Query 003958
Match_columns 784
No_of_seqs 348 out of 3731
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 09:34:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003958.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003958hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 100.0 7.1E-88 2.4E-92 806.1 55.1 691 30-784 1-733 (823)
2 3o21_A Glutamate receptor 3; p 100.0 1.8E-50 6.2E-55 437.6 37.9 373 29-426 3-380 (389)
3 2e4u_A Metabotropic glutamate 100.0 5.1E-49 1.7E-53 446.3 41.8 394 27-463 10-486 (555)
4 3sm9_A Mglur3, metabotropic gl 100.0 2.7E-49 9.3E-54 438.6 38.5 371 27-418 9-462 (479)
5 4gpa_A Glutamate receptor 4; P 100.0 1.1E-48 3.8E-53 425.7 39.1 377 28-428 2-380 (389)
6 3ks9_A Mglur1, metabotropic gl 100.0 9.1E-49 3.1E-53 436.4 38.3 396 26-460 12-496 (496)
7 4f11_A Gamma-aminobutyric acid 100.0 3.6E-49 1.2E-53 435.4 31.6 389 27-457 10-424 (433)
8 3om0_A Glutamate receptor, ion 100.0 2.4E-48 8.4E-53 422.9 35.3 373 30-426 3-381 (393)
9 3mq4_A Mglur7, metabotropic gl 100.0 6.5E-49 2.2E-53 437.0 28.9 374 26-418 11-467 (481)
10 3h6g_A Glutamate receptor, ion 100.0 1.4E-47 4.7E-52 417.4 37.8 374 29-426 2-383 (395)
11 3hsy_A Glutamate receptor 2; l 100.0 1.6E-47 5.3E-52 413.4 36.0 367 30-425 1-373 (376)
12 1dp4_A Atrial natriuretic pept 100.0 6.3E-48 2.2E-52 426.0 33.7 387 30-462 1-423 (435)
13 1jdp_A NPR-C, atrial natriuret 100.0 2E-47 6.9E-52 422.4 36.7 366 28-422 6-397 (441)
14 3saj_A Glutamate receptor 1; r 100.0 3.6E-46 1.2E-50 404.1 35.5 369 27-427 6-378 (384)
15 3qek_A NMDA glutamate receptor 100.0 4.3E-46 1.5E-50 403.8 32.4 341 28-420 2-370 (384)
16 3qel_B Glutamate [NMDA] recept 100.0 8E-40 2.7E-44 349.2 26.9 335 29-419 2-351 (364)
17 3i45_A Twin-arginine transloca 100.0 2.3E-38 7.9E-43 343.6 33.3 352 29-425 3-365 (387)
18 3h5l_A Putative branched-chain 100.0 5.6E-39 1.9E-43 352.3 26.4 348 27-414 10-393 (419)
19 4f06_A Extracellular ligand-bi 100.0 1.1E-37 3.8E-42 335.7 30.5 340 29-411 3-352 (371)
20 3ipc_A ABC transporter, substr 100.0 7.4E-38 2.5E-42 335.8 27.3 343 30-419 1-351 (356)
21 3td9_A Branched chain amino ac 100.0 2.2E-37 7.4E-42 333.5 29.1 343 27-421 12-364 (366)
22 4gnr_A ABC transporter substra 100.0 9.1E-37 3.1E-41 326.8 31.1 339 27-417 3-351 (353)
23 3hut_A Putative branched-chain 100.0 8.5E-37 2.9E-41 327.8 29.2 344 29-419 2-353 (358)
24 1usg_A Leucine-specific bindin 100.0 7E-37 2.4E-41 326.8 28.1 339 30-414 1-345 (346)
25 3i09_A Periplasmic branched-ch 100.0 2.4E-36 8.1E-41 326.4 30.2 334 29-410 2-342 (375)
26 4evq_A Putative ABC transporte 100.0 3.5E-36 1.2E-40 325.2 30.5 346 27-420 12-364 (375)
27 3lkb_A Probable branched-chain 100.0 1E-36 3.5E-41 331.4 25.9 351 28-422 4-377 (392)
28 3eaf_A ABC transporter, substr 100.0 4.7E-36 1.6E-40 325.8 29.8 350 29-420 2-372 (391)
29 3n0w_A ABC branched chain amin 100.0 3E-36 1E-40 326.0 27.7 335 28-410 3-346 (379)
30 3n0x_A Possible substrate bind 100.0 7.5E-36 2.6E-40 322.1 29.3 330 30-408 3-346 (374)
31 4eyg_A Twin-arginine transloca 100.0 1.8E-35 6.3E-40 318.7 32.2 346 28-419 3-359 (368)
32 3lop_A Substrate binding perip 100.0 1E-35 3.5E-40 320.0 27.2 339 29-412 3-354 (364)
33 3sg0_A Extracellular ligand-bi 100.0 6.3E-35 2.1E-39 316.8 21.9 343 28-414 24-385 (386)
34 1pea_A Amidase operon; gene re 100.0 1.6E-32 5.5E-37 297.3 32.6 347 28-417 4-357 (385)
35 3snr_A Extracellular ligand-bi 100.0 4.9E-33 1.7E-37 299.0 23.7 341 28-414 4-361 (362)
36 2h4a_A YRAM (HI1655); perplasm 99.9 1E-26 3.6E-31 242.1 19.2 307 33-414 2-317 (325)
37 3ckm_A YRAM (HI1655), LPOA; pe 99.9 1.2E-26 4E-31 244.8 17.6 312 32-416 3-321 (327)
38 1yae_A Glutamate receptor, ion 99.9 2.6E-21 8.8E-26 202.6 14.5 227 466-784 11-261 (312)
39 1pb7_A N-methyl-D-aspartate re 99.8 1.6E-20 5.5E-25 194.2 11.3 204 468-784 41-260 (292)
40 2a5s_A N-methyl-D-aspartate re 99.8 7.7E-20 2.6E-24 188.4 13.0 208 464-784 25-253 (284)
41 3g3k_A Glutamate receptor, ion 99.8 1.6E-19 5.6E-24 183.5 14.5 204 467-783 3-226 (259)
42 2rc8_A Glutamate [NMDA] recept 99.8 1.1E-19 3.8E-24 188.3 12.6 184 491-784 67-262 (294)
43 4h5g_A Amino acid ABC superfam 99.8 7.9E-19 2.7E-23 176.5 13.6 192 468-783 12-209 (243)
44 4gvo_A LMO2349 protein; struct 99.8 2E-18 6.8E-23 173.5 11.7 196 466-783 7-207 (243)
45 1mqi_A Glutamate receptor 2; G 99.7 2.2E-17 7.6E-22 168.1 16.2 200 467-784 3-230 (263)
46 3kzg_A Arginine 3RD transport 99.7 2.7E-17 9.2E-22 164.6 15.0 190 468-783 3-202 (237)
47 2v3u_A Glutamate receptor delt 99.7 2.3E-17 8E-22 168.1 14.7 202 467-784 2-232 (265)
48 3k4u_A Binding component of AB 99.7 3.3E-17 1.1E-21 164.8 14.4 195 467-783 4-200 (245)
49 4f3p_A Glutamine-binding perip 99.7 8E-17 2.7E-21 162.5 16.7 194 464-783 20-215 (249)
50 4dz1_A DALS D-alanine transpor 99.7 1.8E-16 6.2E-21 160.9 18.6 195 466-782 27-226 (259)
51 3kbr_A Cyclohexadienyl dehydra 99.7 4.2E-17 1.4E-21 163.3 11.9 192 467-780 14-207 (239)
52 3del_B Arginine binding protei 99.7 1.5E-16 5E-21 159.7 15.4 189 467-783 10-204 (242)
53 3mpk_A Virulence sensor protei 99.7 1.9E-16 6.4E-21 161.5 16.0 192 467-783 31-225 (267)
54 1ii5_A SLR1257 protein; membra 99.7 4E-16 1.4E-20 155.3 17.8 190 468-783 4-199 (233)
55 3i6v_A Periplasmic His/Glu/Gln 99.7 1.1E-16 3.8E-21 159.5 12.9 184 467-783 4-189 (232)
56 3hv1_A Polar amino acid ABC up 99.7 1.9E-16 6.4E-21 161.7 13.8 193 467-783 20-220 (268)
57 3tql_A Arginine-binding protei 99.7 4.7E-16 1.6E-20 154.1 14.6 192 468-783 2-200 (227)
58 3h7m_A Sensor protein; histidi 99.7 9.7E-16 3.3E-20 152.6 15.9 192 466-783 9-202 (234)
59 1lst_A Lysine, arginine, ornit 99.7 5.7E-16 2E-20 155.0 14.1 193 467-783 3-204 (239)
60 2y7i_A STM4351; arginine-bindi 99.6 1.5E-15 5.1E-20 150.8 15.5 190 467-783 5-200 (229)
61 1wdn_A GLNBP, glutamine bindin 99.6 1.6E-15 5.6E-20 150.0 15.1 190 468-783 3-194 (226)
62 4eq9_A ABC transporter substra 99.6 9.5E-16 3.3E-20 154.1 11.8 193 467-783 7-207 (246)
63 2q88_A EHUB, putative ABC tran 99.6 4.3E-15 1.5E-19 150.4 13.8 193 468-783 13-212 (257)
64 3qax_A Probable ABC transporte 99.6 6.9E-15 2.4E-19 149.9 14.9 190 467-783 30-225 (268)
65 4i62_A Amino acid ABC transpor 99.6 5.6E-15 1.9E-19 150.6 13.4 192 468-783 39-236 (269)
66 2pyy_A Ionotropic glutamate re 99.6 8.3E-15 2.8E-19 145.1 14.0 191 468-783 3-195 (228)
67 2vha_A Periplasmic binding tra 99.6 1E-14 3.6E-19 150.3 15.2 192 468-783 17-220 (287)
68 2iee_A ORF2, probable ABC tran 99.6 5.5E-15 1.9E-19 151.0 11.5 190 467-783 20-218 (271)
69 2yjp_A Putative ABC transporte 99.6 9.1E-15 3.1E-19 151.0 12.7 190 468-783 55-248 (291)
70 2pvu_A ARTJ; basic amino acid 99.6 2E-14 6.8E-19 146.9 14.9 190 466-781 40-233 (272)
71 1xt8_A Putative amino-acid tra 99.6 1.1E-14 3.7E-19 150.6 13.0 190 468-783 44-237 (292)
72 2yln_A Putative ABC transporte 99.5 2.1E-14 7.1E-19 147.6 13.2 188 468-783 57-249 (283)
73 2v25_A Major cell-binding fact 99.4 1.7E-13 5.8E-18 138.6 10.1 189 468-783 38-233 (259)
74 2ozz_A Hypothetical protein YH 98.5 2.1E-07 7.3E-12 89.3 7.9 160 489-783 27-200 (231)
75 2h3h_A Sugar ABC transporter, 98.3 7E-05 2.4E-09 77.3 22.2 198 32-246 2-206 (313)
76 3brq_A HTH-type transcriptiona 98.3 2.6E-05 9E-10 79.7 18.5 205 29-251 17-229 (296)
77 3ksm_A ABC-type sugar transpor 98.2 5.4E-05 1.8E-09 76.5 18.9 199 32-246 1-211 (276)
78 3d02_A Putative LACI-type tran 98.2 0.00021 7E-09 73.3 23.0 202 30-247 3-214 (303)
79 2qu7_A Putative transcriptiona 98.2 2.1E-05 7.1E-10 80.3 14.6 203 29-251 6-216 (288)
80 1dbq_A Purine repressor; trans 98.2 7.8E-05 2.7E-09 75.9 18.6 206 30-252 6-217 (289)
81 3rot_A ABC sugar transporter, 98.1 6E-05 2.1E-09 77.2 16.6 205 31-249 3-215 (297)
82 3brs_A Periplasmic binding pro 98.1 0.00013 4.5E-09 74.2 18.8 201 31-247 5-215 (289)
83 1tjy_A Sugar transport protein 98.1 0.00037 1.3E-08 71.9 22.0 196 33-245 5-212 (316)
84 3l49_A ABC sugar (ribose) tran 98.1 0.00016 5.3E-09 73.7 18.7 200 30-247 4-216 (291)
85 2rjo_A Twin-arginine transloca 98.0 0.00029 9.9E-09 73.3 20.8 205 30-247 4-222 (332)
86 2qh8_A Uncharacterized protein 98.0 0.00026 9E-09 72.5 19.6 186 30-229 7-201 (302)
87 2x7x_A Sensor protein; transfe 98.0 0.0003 1E-08 72.9 20.3 200 30-246 5-212 (325)
88 2fn9_A Ribose ABC transporter, 98.0 0.00034 1.2E-08 71.2 20.2 197 32-246 3-215 (290)
89 3n5l_A Binding protein compone 98.0 2.9E-05 9.8E-10 79.9 11.8 98 682-783 102-214 (310)
90 3c3k_A Alanine racemase; struc 98.0 0.00038 1.3E-08 70.6 20.2 203 29-254 6-216 (285)
91 3gbv_A Putative LACI-family tr 98.0 0.00023 7.7E-09 73.0 18.5 205 28-246 5-223 (304)
92 2fvy_A D-galactose-binding per 98.0 0.00036 1.2E-08 71.6 19.9 204 32-245 3-226 (309)
93 3p7i_A PHND, subunit of alkylp 98.0 4.1E-05 1.4E-09 79.0 12.5 98 682-783 112-223 (321)
94 3lkv_A Uncharacterized conserv 98.0 0.00025 8.5E-09 72.6 18.2 190 27-230 4-202 (302)
95 3o1i_D Periplasmic protein TOR 98.0 0.00011 3.8E-09 75.3 15.5 205 30-247 4-218 (304)
96 2iks_A DNA-binding transcripti 97.9 0.0004 1.4E-08 70.7 19.2 205 29-252 18-227 (293)
97 2fep_A Catabolite control prot 97.9 0.00028 9.5E-09 71.8 17.8 206 28-251 13-224 (289)
98 2rgy_A Transcriptional regulat 97.9 0.00015 5E-09 73.9 15.5 205 30-252 7-219 (290)
99 2h0a_A TTHA0807, transcription 97.9 6.1E-05 2.1E-09 76.1 12.5 201 33-253 1-211 (276)
100 3lft_A Uncharacterized protein 97.9 0.00072 2.5E-08 68.9 20.4 200 31-246 2-210 (295)
101 3dbi_A Sugar-binding transcrip 97.9 0.00035 1.2E-08 72.9 18.4 207 29-252 59-272 (338)
102 3h75_A Periplasmic sugar-bindi 97.9 0.00083 2.8E-08 70.4 21.3 208 31-250 3-233 (350)
103 2o20_A Catabolite control prot 97.9 0.00027 9.3E-09 73.5 17.4 208 29-254 61-271 (332)
104 3g1w_A Sugar ABC transporter; 97.9 0.00077 2.6E-08 69.0 20.5 210 31-256 4-220 (305)
105 2vk2_A YTFQ, ABC transporter p 97.9 0.00035 1.2E-08 71.8 17.8 205 31-250 2-219 (306)
106 3clk_A Transcription regulator 97.9 0.00015 5E-09 73.9 14.7 204 29-250 6-213 (290)
107 3d8u_A PURR transcriptional re 97.9 0.0005 1.7E-08 69.2 18.6 205 31-253 3-212 (275)
108 3k4h_A Putative transcriptiona 97.9 0.00041 1.4E-08 70.6 17.5 205 29-250 6-220 (292)
109 3l6u_A ABC-type sugar transpor 97.8 0.00098 3.3E-08 67.8 20.1 201 29-247 6-220 (293)
110 2ioy_A Periplasmic sugar-bindi 97.8 0.0018 6.1E-08 65.5 21.9 196 33-246 3-207 (283)
111 3o74_A Fructose transport syst 97.8 0.00064 2.2E-08 68.3 18.3 205 32-256 3-214 (272)
112 1qpz_A PURA, protein (purine n 97.8 0.00096 3.3E-08 69.6 20.0 206 30-252 57-268 (340)
113 2hsg_A Glucose-resistance amyl 97.8 0.0002 6.7E-09 74.6 14.4 205 28-250 57-267 (332)
114 3bbl_A Regulatory protein of L 97.8 0.00032 1.1E-08 71.3 15.6 203 31-251 4-217 (287)
115 1jx6_A LUXP protein; protein-l 97.8 0.00092 3.1E-08 69.8 19.4 208 28-246 40-258 (342)
116 8abp_A L-arabinose-binding pro 97.8 0.00095 3.2E-08 68.4 19.0 213 31-256 2-231 (306)
117 3egc_A Putative ribose operon 97.8 0.0003 1E-08 71.6 14.5 206 29-252 6-216 (291)
118 3ctp_A Periplasmic binding pro 97.7 0.00028 9.6E-09 73.4 14.2 202 29-254 58-263 (330)
119 3gv0_A Transcriptional regulat 97.7 0.0012 4.2E-08 66.9 18.4 205 29-251 6-217 (288)
120 3jy6_A Transcriptional regulat 97.7 0.002 6.7E-08 64.9 19.5 205 29-255 5-214 (276)
121 3gyb_A Transcriptional regulat 97.7 0.00018 6E-09 72.9 11.1 198 30-250 4-204 (280)
122 3kjx_A Transcriptional regulat 97.6 0.0011 3.8E-08 69.2 16.6 210 28-255 65-280 (344)
123 3g85_A Transcriptional regulat 97.6 0.00061 2.1E-08 69.2 14.2 205 28-252 8-218 (289)
124 3m9w_A D-xylose-binding peripl 97.6 0.0028 9.4E-08 65.1 19.3 200 31-247 2-213 (313)
125 3hcw_A Maltose operon transcri 97.6 0.0038 1.3E-07 63.5 20.1 205 29-252 5-222 (295)
126 3tb6_A Arabinose metabolism tr 97.6 0.0016 5.3E-08 66.4 17.0 208 31-255 15-234 (298)
127 3qk7_A Transcriptional regulat 97.6 0.0013 4.5E-08 66.9 16.1 204 30-252 5-217 (294)
128 3k9c_A Transcriptional regulat 97.6 0.0029 1E-07 64.1 18.6 205 29-254 10-217 (289)
129 3kke_A LACI family transcripti 97.5 0.0018 6.3E-08 66.1 16.1 202 29-250 13-225 (303)
130 3uif_A Sulfonate ABC transport 97.5 0.00042 1.4E-08 72.6 11.0 66 683-754 110-179 (348)
131 3bil_A Probable LACI-family tr 97.5 0.0038 1.3E-07 65.2 18.1 203 30-252 65-271 (348)
132 3e3m_A Transcriptional regulat 97.4 0.0069 2.4E-07 63.4 19.9 207 30-254 69-282 (355)
133 3e61_A Putative transcriptiona 97.4 0.0024 8.3E-08 64.2 15.3 201 29-255 6-210 (277)
134 3cs3_A Sugar-binding transcrip 97.4 0.0047 1.6E-07 62.0 17.2 199 29-255 6-210 (277)
135 3uug_A Multiple sugar-binding 97.3 0.0043 1.5E-07 64.1 16.6 205 31-250 3-232 (330)
136 3hs3_A Ribose operon repressor 97.3 0.0045 1.5E-07 62.2 15.8 199 28-255 7-211 (277)
137 3h5o_A Transcriptional regulat 97.3 0.0066 2.3E-07 63.1 17.2 208 29-255 60-272 (339)
138 2dri_A D-ribose-binding protei 97.3 0.02 6.9E-07 57.1 20.1 196 33-246 3-206 (271)
139 1byk_A Protein (trehalose oper 97.2 0.011 3.9E-07 58.3 17.8 189 33-246 4-196 (255)
140 2fqx_A Membrane lipoprotein TM 97.2 0.021 7.3E-07 58.5 20.1 206 30-255 3-220 (318)
141 4fe7_A Xylose operon regulator 97.2 0.0098 3.3E-07 63.7 17.8 209 27-255 21-236 (412)
142 3qsl_A Putative exported prote 97.2 0.0035 1.2E-07 65.3 13.7 137 504-759 59-205 (346)
143 3s99_A Basic membrane lipoprot 97.1 0.048 1.7E-06 56.5 21.6 201 27-246 22-230 (356)
144 3jvd_A Transcriptional regulat 97.1 0.013 4.5E-07 60.6 17.4 196 29-252 62-261 (333)
145 1jye_A Lactose operon represso 97.1 0.026 9E-07 58.7 19.7 205 29-255 59-271 (349)
146 3huu_A Transcription regulator 97.1 0.0066 2.3E-07 62.0 14.8 200 29-250 20-230 (305)
147 1gud_A ALBP, D-allose-binding 97.1 0.048 1.6E-06 54.9 20.8 209 33-255 3-225 (288)
148 2hqb_A Transcriptional activat 97.0 0.12 4.2E-06 52.2 23.3 194 30-245 4-204 (296)
149 2k1e_A Water soluble analogue 97.0 0.00045 1.5E-08 57.5 4.0 79 597-679 17-97 (103)
150 3miz_A Putative transcriptiona 97.0 0.0017 5.9E-08 66.3 9.0 204 29-252 11-227 (301)
151 2x26_A Periplasmic aliphatic s 97.0 0.0041 1.4E-07 63.6 11.7 70 683-758 96-169 (308)
152 3ix1_A N-formyl-4-amino-5-amin 97.0 0.0023 7.9E-08 65.3 9.7 78 489-574 14-95 (302)
153 3ksx_A Nitrate transport prote 96.9 0.013 4.4E-07 60.4 14.8 70 682-758 121-195 (324)
154 3un6_A Hypothetical protein sa 96.6 0.0026 8.8E-08 66.3 6.8 71 682-759 143-220 (341)
155 2ih3_C Voltage-gated potassium 96.4 0.0011 3.9E-08 56.9 2.4 77 599-679 40-118 (122)
156 3qi7_A Putative transcriptiona 96.2 0.13 4.5E-06 52.7 16.3 217 29-249 10-252 (371)
157 4ddd_A Immunogenic protein; ss 96.2 0.016 5.3E-07 59.8 9.8 62 682-749 136-203 (327)
158 3ixl_A Amdase, arylmalonate de 96.1 0.12 4.1E-06 50.1 15.1 127 88-242 58-201 (240)
159 3h5t_A Transcriptional regulat 96.0 0.088 3E-06 55.1 14.8 207 29-250 66-296 (366)
160 2a9h_A Voltage-gated potassium 95.9 0.0046 1.6E-07 55.4 3.5 77 599-679 63-141 (155)
161 3eff_K Voltage-gated potassium 95.6 0.0092 3.1E-07 52.7 4.3 72 601-676 21-94 (139)
162 2f5x_A BUGD; periplasmic bindi 95.2 0.28 9.6E-06 49.7 14.2 73 681-758 120-202 (312)
163 4h33_A LMO2059 protein; bilaye 95.1 0.013 4.4E-07 51.4 3.6 55 623-677 42-98 (137)
164 2dvz_A BUGE, putative exported 94.7 0.33 1.1E-05 49.2 13.3 73 681-758 124-206 (314)
165 2qpq_A Protein BUG27; alpha/be 94.6 0.44 1.5E-05 48.1 13.8 73 681-758 111-193 (301)
166 2x7q_A Ca3427, possible thiami 93.8 0.4 1.4E-05 49.0 12.0 75 683-766 111-194 (321)
167 3ldc_A Calcium-gated potassium 93.8 0.043 1.5E-06 43.1 3.5 52 624-675 28-81 (82)
168 3pjs_K KCSA, voltage-gated pot 93.7 0.0052 1.8E-07 56.1 -2.4 58 621-678 64-123 (166)
169 3ouf_A Potassium channel prote 93.0 0.031 1.1E-06 45.6 1.5 57 624-680 32-90 (97)
170 2xed_A Putative maleate isomer 93.0 1.9 6.6E-05 42.5 14.8 125 88-240 82-227 (273)
171 1us5_A Putative GLUR0 ligand b 92.8 0.56 1.9E-05 47.5 11.2 61 682-748 121-187 (314)
172 2q67_A Potassium channel prote 92.8 0.06 2.1E-06 45.3 3.0 55 624-678 49-105 (114)
173 2g29_A Nitrate transport prote 92.5 0.23 7.8E-06 52.9 7.9 64 688-758 151-221 (417)
174 1p7b_A Integral membrane chann 92.3 0.12 4.1E-06 52.5 5.0 58 622-679 94-153 (333)
175 1orq_C Potassium channel; volt 91.1 0.12 4.2E-06 49.6 3.4 73 600-676 145-219 (223)
176 3vou_A ION transport 2 domain 91.0 0.22 7.4E-06 44.3 4.7 53 624-676 52-106 (148)
177 3jv9_A OXYR, transcriptional r 90.6 3.3 0.00011 38.5 13.3 68 494-574 17-85 (219)
178 4gx0_A TRKA domain protein; me 90.2 0.31 1E-05 54.3 6.1 121 624-751 51-181 (565)
179 1xl4_A Inward rectifier potass 90.1 0.19 6.6E-06 50.4 3.9 58 622-679 80-139 (301)
180 1lnq_A MTHK channels, potassiu 90.1 0.11 3.9E-06 53.5 2.4 58 624-681 45-104 (336)
181 2dgd_A 223AA long hypothetical 89.3 4.4 0.00015 38.5 12.9 86 152-240 96-190 (223)
182 2zzv_A ABC transporter, solute 89.3 2 6.7E-05 44.6 11.1 60 681-752 163-222 (361)
183 4ab5_A Transcriptional regulat 89.0 3.4 0.00011 38.6 11.9 68 494-574 21-89 (222)
184 3oxn_A Putative transcriptiona 88.1 5.4 0.00019 37.9 12.9 83 467-575 18-101 (241)
185 2fqx_A Membrane lipoprotein TM 87.4 9.8 0.00033 38.3 14.8 126 33-165 131-264 (318)
186 3s99_A Basic membrane lipoprot 86.5 8 0.00027 39.7 13.5 89 32-129 150-238 (356)
187 3beh_A MLL3241 protein; transm 86.3 0.34 1.2E-05 50.3 3.0 77 598-678 139-217 (355)
188 1zbm_A Hypothetical protein AF 85.6 1.3 4.6E-05 43.8 7.0 57 688-753 99-157 (280)
189 3ho7_A OXYR; beta-alpha-barrel 85.4 2.9 0.0001 39.4 9.1 69 494-574 24-92 (232)
190 2qks_A KIR3.1-prokaryotic KIR 85.2 0.56 1.9E-05 47.4 3.9 56 624-679 78-135 (321)
191 4esw_A Pyrimidine biosynthesis 84.9 3.8 0.00013 41.9 10.3 66 681-753 100-168 (342)
192 2i49_A Bicarbonate transporter 84.8 4.3 0.00015 43.1 10.8 68 687-759 153-230 (429)
193 2eq5_A 228AA long hypothetical 84.0 9.3 0.00032 36.3 11.9 111 89-231 68-184 (228)
194 2pfy_A Putative exported prote 82.3 11 0.00037 37.7 12.1 58 681-750 128-185 (301)
195 2r9r_B Paddle chimera voltage 81.5 0.57 1.9E-05 51.1 2.3 56 622-677 373-430 (514)
196 2pfz_A Putative exported prote 81.4 11 0.00039 37.5 11.9 59 681-751 127-185 (301)
197 3r26_A Molybdate-binding perip 81.2 9.8 0.00033 36.4 10.9 90 684-783 107-209 (237)
198 3bfj_A 1,3-propanediol oxidore 81.0 3.8 0.00013 42.8 8.4 88 154-241 23-114 (387)
199 2hqb_A Transcriptional activat 80.6 20 0.00069 35.5 13.5 121 33-166 128-248 (296)
200 1jfl_A Aspartate racemase; alp 79.4 9.8 0.00034 36.2 10.1 39 87-126 65-103 (228)
201 3ox4_A Alcohol dehydrogenase 2 78.9 2.1 7.2E-05 44.6 5.5 90 153-242 20-111 (383)
202 2q5c_A NTRC family transcripti 78.7 39 0.0013 31.1 13.6 159 31-247 4-162 (196)
203 2hzl_A Trap-T family sorbitol/ 78.2 15 0.0005 37.9 11.8 59 681-752 162-220 (365)
204 3ukm_A Potassium channel subfa 77.8 0.74 2.5E-05 45.2 1.5 66 624-689 201-275 (280)
205 2l82_A Designed protein OR32; 76.5 19 0.00065 28.6 8.9 96 142-246 5-104 (162)
206 3gzg_A Molybdate-binding perip 76.5 19 0.00067 34.7 11.5 91 683-782 119-224 (253)
207 1atg_A MODA, periplasmic molyb 76.1 7.2 0.00025 36.6 8.2 71 495-574 13-89 (231)
208 2hxr_A HTH-type transcriptiona 73.6 58 0.002 30.2 14.9 69 494-574 43-111 (238)
209 1vlj_A NADH-dependent butanol 72.3 7.5 0.00026 40.8 7.7 88 154-241 33-123 (407)
210 2zsk_A PH1733, 226AA long hypo 72.2 23 0.00079 33.5 10.6 76 92-196 69-144 (226)
211 1rrm_A Lactaldehyde reductase; 72.0 4.2 0.00014 42.5 5.6 89 154-242 21-111 (386)
212 2fyi_A HTH-type transcriptiona 71.3 64 0.0022 29.8 13.7 71 493-574 26-96 (228)
213 3fzv_A Probable transcriptiona 71.2 35 0.0012 33.5 12.3 81 468-574 95-177 (306)
214 3m9w_A D-xylose-binding peripl 70.6 17 0.00058 36.2 9.8 79 165-246 3-84 (313)
215 3uhj_A Probable glycerol dehyd 69.1 5.4 0.00018 41.5 5.6 74 154-231 43-116 (387)
216 1o2d_A Alcohol dehydrogenase, 68.6 11 0.00037 39.0 7.8 87 154-241 31-120 (371)
217 2y7p_A LYSR-type regulatory pr 66.2 30 0.001 32.0 10.0 69 494-575 21-90 (218)
218 3dbi_A Sugar-binding transcrip 66.1 23 0.00079 35.7 9.8 88 155-245 52-143 (338)
219 1mkz_A Molybdenum cofactor bio 65.6 25 0.00084 31.6 8.7 65 164-230 10-78 (172)
220 3um7_A Potassium channel subfa 65.6 2 7E-05 42.8 1.5 55 622-676 113-169 (309)
221 3g1w_A Sugar ABC transporter; 64.7 17 0.00059 35.9 8.4 80 165-246 5-87 (305)
222 3muq_A Uncharacterized conserv 64.6 96 0.0033 29.4 13.0 74 493-575 18-94 (237)
223 2esn_A Probable transcriptiona 64.5 58 0.002 31.9 12.4 69 494-574 114-185 (310)
224 2xxp_A CPS2A; replication, pep 63.7 9.6 0.00033 39.7 6.2 69 681-758 25-99 (398)
225 2pju_A Propionate catabolism o 62.9 1E+02 0.0035 29.0 12.9 134 72-247 40-174 (225)
226 3jy6_A Transcriptional regulat 62.7 25 0.00085 34.1 9.0 78 164-246 7-86 (276)
227 3tb6_A Arabinose metabolism tr 62.7 32 0.0011 33.7 9.9 79 165-246 16-100 (298)
228 1i6a_A OXYR, hydrogen peroxide 62.3 12 0.00042 34.7 6.4 70 493-574 17-86 (219)
229 3ce9_A Glycerol dehydrogenase; 62.2 15 0.00051 37.6 7.4 95 139-239 12-108 (354)
230 2gzm_A Glutamate racemase; enz 61.9 49 0.0017 32.1 10.8 39 88-126 57-95 (267)
231 3gbv_A Putative LACI-family tr 61.6 25 0.00085 34.6 8.9 85 162-246 6-95 (304)
232 3o74_A Fructose transport syst 61.1 16 0.00056 35.3 7.3 79 165-246 3-83 (272)
233 3l6u_A ABC-type sugar transpor 61.0 26 0.00089 34.3 8.9 81 163-246 7-90 (293)
234 3l6g_A Betaine ABC transporter 60.6 39 0.0013 32.6 9.7 43 495-546 16-58 (256)
235 2oho_A Glutamate racemase; iso 59.6 40 0.0014 32.9 9.7 37 90-126 68-104 (273)
236 3fxq_A LYSR type regulator of 58.9 62 0.0021 31.6 11.4 70 494-574 105-175 (305)
237 2dwu_A Glutamate racemase; iso 58.0 80 0.0027 30.7 11.6 125 88-240 61-200 (276)
238 1al3_A Cys regulon transcripti 58.0 1.3E+02 0.0043 29.7 13.7 70 494-574 106-175 (324)
239 2ql3_A Probable transcriptiona 58.0 1E+02 0.0036 27.6 12.2 69 494-574 18-86 (209)
240 3uug_A Multiple sugar-binding 57.7 27 0.00091 35.0 8.4 79 165-246 4-85 (330)
241 3um7_A Potassium channel subfa 57.4 4 0.00014 40.7 1.9 52 624-675 224-283 (309)
242 3h5o_A Transcriptional regulat 56.8 43 0.0015 33.6 9.9 86 157-246 55-142 (339)
243 3hn0_A Nitrate transport prote 56.7 30 0.001 34.0 8.3 62 690-758 94-160 (283)
244 3h75_A Periplasmic sugar-bindi 56.6 27 0.00091 35.4 8.3 80 164-246 3-87 (350)
245 1jq5_A Glycerol dehydrogenase; 56.2 16 0.00054 37.8 6.3 95 139-239 10-106 (370)
246 2fn9_A Ribose ABC transporter, 56.1 33 0.0011 33.4 8.7 79 165-246 3-84 (290)
247 1sw5_A Osmoprotection protein 56.1 34 0.0012 33.4 8.6 38 498-543 23-61 (275)
248 1ixc_A CBNR, LYSR-type regulat 56.1 1E+02 0.0035 29.6 12.4 69 494-574 104-172 (294)
249 3k9c_A Transcriptional regulat 55.6 1.1E+02 0.0036 29.7 12.3 117 33-160 128-252 (289)
250 3l49_A ABC sugar (ribose) tran 55.4 25 0.00086 34.3 7.6 79 165-246 6-87 (291)
251 4dik_A Flavoprotein; TM0755, e 55.4 35 0.0012 35.6 8.9 93 164-261 265-365 (410)
252 8abp_A L-arabinose-binding pro 55.0 30 0.001 34.0 8.2 78 165-246 3-83 (306)
253 3k6v_A Solute-binding protein 54.4 1.5E+02 0.0053 29.9 13.3 69 498-575 59-133 (354)
254 3kke_A LACI family transcripti 53.9 33 0.0011 33.8 8.2 87 156-246 7-95 (303)
255 3brq_A HTH-type transcriptiona 52.0 59 0.002 31.5 9.8 84 159-246 14-102 (296)
256 2fp4_A Succinyl-COA ligase [GD 51.8 1.8E+02 0.0063 28.6 13.1 145 80-243 79-234 (305)
257 3rot_A ABC sugar transporter, 51.6 29 0.00099 34.1 7.3 81 165-246 4-87 (297)
258 1y5e_A Molybdenum cofactor bio 51.6 53 0.0018 29.3 8.3 67 162-230 11-81 (169)
259 3ist_A Glutamate racemase; str 50.9 75 0.0026 30.8 9.9 38 88-125 59-96 (269)
260 2czl_A Hypothetical protein TT 50.8 42 0.0014 32.4 8.3 59 687-753 91-150 (272)
261 2pjk_A 178AA long hypothetical 50.7 51 0.0017 29.7 8.0 67 162-230 13-90 (178)
262 1ccw_A Protein (glutamate muta 50.7 1.2E+02 0.004 25.8 10.1 85 165-257 4-93 (137)
263 3k4h_A Putative transcriptiona 49.6 37 0.0013 33.1 7.7 81 162-246 6-93 (292)
264 3kos_A HTH-type transcriptiona 49.4 1.1E+02 0.0036 27.8 10.7 93 685-783 96-191 (219)
265 1tjy_A Sugar transport protein 49.1 34 0.0012 34.1 7.5 80 165-246 4-86 (316)
266 2h9b_A HTH-type transcriptiona 49.1 2E+02 0.0067 28.0 14.9 68 494-574 103-171 (312)
267 2iks_A DNA-binding transcripti 49.0 29 0.001 34.0 6.9 86 157-245 13-100 (293)
268 3ksm_A ABC-type sugar transpor 48.8 36 0.0012 32.8 7.5 80 166-246 2-85 (276)
269 3sya_A G protein-activated inw 48.6 11 0.00039 38.0 3.6 60 622-681 89-152 (340)
270 2jfq_A Glutamate racemase; cel 48.5 97 0.0033 30.3 10.4 39 88-126 76-114 (286)
271 3i42_A Response regulator rece 48.5 1.1E+02 0.0036 24.9 9.5 57 179-244 14-72 (127)
272 3s81_A Putative aspartate race 48.3 43 0.0015 32.6 7.7 40 86-126 89-128 (268)
273 2ioy_A Periplasmic sugar-bindi 48.3 48 0.0016 32.2 8.3 79 165-246 2-83 (283)
274 3e3m_A Transcriptional regulat 48.3 55 0.0019 33.1 9.0 86 157-246 63-150 (355)
275 3tmg_A Glycine betaine, L-prol 48.1 97 0.0033 30.2 10.4 40 497-545 32-71 (280)
276 2fep_A Catabolite control prot 48.0 55 0.0019 31.9 8.7 79 164-246 16-96 (289)
277 3hl0_A Maleylacetate reductase 47.9 25 0.00087 35.8 6.2 81 154-238 24-106 (353)
278 2jfn_A Glutamate racemase; cel 47.9 1.1E+02 0.0036 30.0 10.6 36 91-126 78-114 (285)
279 3huu_A Transcription regulator 47.8 29 0.001 34.2 6.7 87 156-246 14-107 (305)
280 1b73_A Glutamate racemase; iso 47.7 75 0.0026 30.5 9.3 127 86-240 52-190 (254)
281 2is8_A Molybdopterin biosynthe 47.5 48 0.0017 29.4 7.3 63 166-230 3-71 (164)
282 3gyb_A Transcriptional regulat 47.2 59 0.002 31.3 8.8 116 33-160 120-243 (280)
283 3ukm_A Potassium channel subfa 47.0 5.6 0.00019 39.0 1.0 56 622-677 91-148 (280)
284 1zuw_A Glutamate racemase 1; ( 46.9 1.2E+02 0.004 29.5 10.7 41 86-126 55-96 (272)
285 3egc_A Putative ribose operon 46.9 31 0.001 33.8 6.6 80 162-245 6-87 (291)
286 2fvy_A D-galactose-binding per 46.5 58 0.002 31.9 8.7 79 165-246 3-85 (309)
287 2dri_A D-ribose-binding protei 46.4 60 0.0021 31.2 8.6 79 165-246 2-83 (271)
288 3kjx_A Transcriptional regulat 46.1 93 0.0032 31.1 10.4 78 165-246 69-148 (344)
289 1uth_A LYSR-type regulatory pr 45.8 99 0.0034 30.4 10.4 68 494-574 118-186 (315)
290 3rfq_A Pterin-4-alpha-carbinol 45.6 43 0.0015 30.4 6.7 65 164-230 30-98 (185)
291 2o20_A Catabolite control prot 44.9 64 0.0022 32.2 8.8 84 159-246 58-143 (332)
292 2h3h_A Sugar ABC transporter, 44.4 57 0.002 32.2 8.3 79 166-246 3-83 (313)
293 2yxb_A Coenzyme B12-dependent 44.1 1.4E+02 0.0048 26.2 9.8 86 164-256 18-107 (161)
294 4edp_A ABC transporter, substr 43.2 2E+02 0.0068 28.4 12.4 57 723-783 216-274 (351)
295 3hhf_B Transcriptional regulat 43.0 29 0.00098 31.6 5.4 66 494-574 20-85 (213)
296 1jx6_A LUXP protein; protein-l 43.0 66 0.0023 32.2 8.6 81 165-245 44-128 (342)
297 3gv0_A Transcriptional regulat 42.0 58 0.002 31.6 7.8 82 161-246 5-90 (288)
298 3jzd_A Iron-containing alcohol 42.0 33 0.0011 35.1 6.0 82 153-238 25-108 (358)
299 3e61_A Putative transcriptiona 41.5 54 0.0018 31.6 7.4 77 164-246 8-87 (277)
300 2vvt_A Glutamate racemase; iso 41.0 1.1E+02 0.0036 30.1 9.4 126 87-240 77-217 (290)
301 3pzy_A MOG; ssgcid, seattle st 41.0 50 0.0017 29.3 6.3 63 165-230 8-75 (164)
302 2rin_A Putative glycine betain 40.8 77 0.0026 31.2 8.4 39 498-545 24-62 (298)
303 2h98_A HTH-type transcriptiona 40.0 2.7E+02 0.0093 27.1 15.7 68 494-574 103-171 (313)
304 3uhf_A Glutamate racemase; str 39.6 1.7E+02 0.006 28.3 10.4 60 66-126 47-116 (274)
305 1jye_A Lactose operon represso 39.2 76 0.0026 32.0 8.3 70 159-230 56-127 (349)
306 2rgy_A Transcriptional regulat 39.0 58 0.002 31.7 7.3 80 163-246 7-91 (290)
307 3ojc_A Putative aspartate/glut 38.9 38 0.0013 32.1 5.5 58 90-173 70-127 (231)
308 1twy_A ABC transporter, peripl 38.7 44 0.0015 32.3 6.3 71 495-575 41-113 (290)
309 3d02_A Putative LACI-type tran 38.6 61 0.0021 31.7 7.4 80 165-246 5-87 (303)
310 3lte_A Response regulator; str 38.4 99 0.0034 25.2 7.8 57 180-245 18-76 (132)
311 3d8u_A PURR transcriptional re 38.4 70 0.0024 30.6 7.7 78 165-246 4-83 (275)
312 1ta9_A Glycerol dehydrogenase; 38.4 35 0.0012 36.1 5.7 83 154-239 81-165 (450)
313 3bil_A Probable LACI-family tr 38.3 49 0.0017 33.5 6.7 79 164-246 66-146 (348)
314 2hsg_A Glucose-resistance amyl 38.0 83 0.0028 31.3 8.4 78 164-245 60-139 (332)
315 3p6l_A Sugar phosphate isomera 37.9 1.2E+02 0.004 28.9 9.2 93 153-246 25-129 (262)
316 3hs3_A Ribose operon repressor 37.9 55 0.0019 31.6 6.8 69 158-229 4-75 (277)
317 2vk2_A YTFQ, ABC transporter p 37.7 70 0.0024 31.4 7.7 79 165-246 3-84 (306)
318 2g2c_A Putative molybdenum cof 37.5 69 0.0024 28.4 6.7 63 166-230 7-78 (167)
319 3out_A Glutamate racemase; str 37.0 1.2E+02 0.0042 29.3 8.9 38 88-125 61-99 (268)
320 1oj7_A Hypothetical oxidoreduc 36.9 36 0.0012 35.6 5.4 83 155-241 43-128 (408)
321 3hcw_A Maltose operon transcri 36.9 2.9E+02 0.01 26.5 12.7 116 33-161 133-260 (295)
322 3dmy_A Protein FDRA; predicted 36.5 4.1E+02 0.014 28.1 13.4 142 81-244 45-197 (480)
323 3gt7_A Sensor protein; structu 36.1 1.7E+02 0.0059 24.7 9.2 58 179-245 18-77 (154)
324 4a8t_A Putrescine carbamoyltra 36.0 3.4E+02 0.012 27.1 13.7 132 33-199 65-206 (339)
325 1y80_A Predicted cobalamin bin 36.0 1.8E+02 0.0062 26.7 9.8 86 165-256 89-178 (210)
326 3l4e_A Uncharacterized peptida 35.9 1.1E+02 0.0039 28.1 8.1 96 153-257 16-120 (206)
327 2x7x_A Sensor protein; transfe 35.6 96 0.0033 30.7 8.4 81 163-246 5-88 (325)
328 3rvy_A ION transport protein; 35.4 13 0.00043 36.8 1.5 58 622-679 178-243 (285)
329 3lr1_A Tungstate ABC transport 35.2 24 0.00083 33.6 3.4 74 493-575 18-94 (236)
330 3kbq_A Protein TA0487; structu 35.0 1.6E+02 0.0055 26.2 8.6 62 165-229 4-70 (172)
331 1gud_A ALBP, D-allose-binding 34.7 96 0.0033 30.0 8.0 81 165-246 2-85 (288)
332 4gd5_A Phosphate ABC transport 34.6 25 0.00086 34.4 3.6 64 1-75 4-71 (279)
333 3tsm_A IGPS, indole-3-glycerol 34.6 1.9E+02 0.0064 28.0 9.7 87 153-247 82-171 (272)
334 3brs_A Periplasmic binding pro 34.6 47 0.0016 32.3 5.7 80 165-245 6-90 (289)
335 1jlj_A Gephyrin; globular alph 34.5 1E+02 0.0035 28.0 7.4 67 162-230 12-87 (189)
336 4a8p_A Putrescine carbamoyltra 34.2 3.8E+02 0.013 27.0 14.6 133 33-199 43-184 (355)
337 1i4n_A Indole-3-glycerol phosp 33.8 95 0.0033 29.7 7.3 86 153-247 64-152 (251)
338 3miz_A Putative transcriptiona 33.4 1.1E+02 0.0038 29.7 8.3 73 156-231 5-80 (301)
339 3grc_A Sensor protein, kinase; 33.2 1E+02 0.0036 25.5 7.1 56 179-243 17-74 (140)
340 3ezx_A MMCP 1, monomethylamine 33.0 2.8E+02 0.0095 25.6 10.4 86 165-257 93-185 (215)
341 3guv_A Site-specific recombina 32.8 1.9E+02 0.0065 25.3 8.9 21 150-170 26-46 (167)
342 2nr1_A NR1 M2, M2; receptor, s 32.5 3.4 0.00012 23.7 -1.8 17 623-639 7-23 (27)
343 2rjo_A Twin-arginine transloca 32.3 66 0.0022 32.1 6.5 79 165-246 6-89 (332)
344 3dnf_A ISPH, LYTB, 4-hydroxy-3 32.2 85 0.0029 30.7 6.7 52 73-124 186-239 (297)
345 2csu_A 457AA long hypothetical 32.1 90 0.0031 33.0 7.6 145 80-245 72-227 (457)
346 3qk7_A Transcriptional regulat 32.1 89 0.003 30.4 7.3 79 163-246 5-89 (294)
347 2de3_A Dibenzothiophene desulf 31.9 92 0.0031 31.7 7.5 32 729-766 210-241 (365)
348 3c3k_A Alanine racemase; struc 31.8 1.2E+02 0.0042 29.2 8.3 76 163-242 7-84 (285)
349 5nul_A Flavodoxin; electron tr 31.7 1.2E+02 0.0042 25.3 7.3 81 167-259 1-90 (138)
350 3lmz_A Putative sugar isomeras 31.4 1.2E+02 0.004 28.9 7.9 93 153-246 33-127 (257)
351 3sr0_A Adenylate kinase; phosp 31.3 22 0.00077 33.0 2.4 31 97-127 2-32 (206)
352 3gl9_A Response regulator; bet 30.9 1.4E+02 0.0048 24.0 7.4 57 180-245 14-72 (122)
353 3jvd_A Transcriptional regulat 30.8 3.9E+02 0.013 26.2 13.8 119 30-161 173-299 (333)
354 3iwt_A 178AA long hypothetical 30.6 1.1E+02 0.0039 27.2 7.1 63 166-230 17-90 (178)
355 3umf_A Adenylate kinase; rossm 30.3 20 0.00067 33.7 1.8 31 96-126 30-60 (217)
356 3o1i_D Periplasmic protein TOR 30.2 63 0.0022 31.5 5.9 80 165-246 6-88 (304)
357 3bbl_A Regulatory protein of L 30.2 83 0.0029 30.4 6.7 78 165-246 5-88 (287)
358 2l69_A Rossmann 2X3 fold prote 30.2 1.7E+02 0.0059 22.4 6.6 36 140-175 27-62 (134)
359 2qip_A Protein of unknown func 29.3 2.4E+02 0.0083 24.6 8.9 93 153-246 36-134 (165)
360 3r7f_A Aspartate carbamoyltran 29.1 2.2E+02 0.0075 28.0 9.2 134 33-198 38-179 (304)
361 3g85_A Transcriptional regulat 29.1 2E+02 0.0068 27.5 9.3 121 33-161 129-258 (289)
362 2qh8_A Uncharacterized protein 29.1 2.8E+02 0.0094 26.9 10.4 112 32-160 141-255 (302)
363 3cg4_A Response regulator rece 28.7 2.4E+02 0.0083 23.1 13.1 56 179-243 18-75 (142)
364 3fni_A Putative diflavin flavo 28.5 1.8E+02 0.0062 25.3 7.9 76 165-248 5-87 (159)
365 3t6k_A Response regulator rece 28.4 2E+02 0.007 23.5 8.2 56 180-244 16-73 (136)
366 3spc_A Inward-rectifier K+ cha 28.3 26 0.0009 35.3 2.5 60 622-681 92-155 (343)
367 3kht_A Response regulator; PSI 28.3 2.1E+02 0.0073 23.6 8.3 58 180-244 17-76 (144)
368 3zy2_A Putative GDP-fucose pro 28.1 1.7E+02 0.006 29.3 8.1 90 143-245 259-348 (362)
369 3clk_A Transcription regulator 27.4 72 0.0025 31.0 5.6 78 164-245 8-88 (290)
370 3cij_A UPF0100 protein AF_0094 27.2 4.2E+02 0.015 25.4 14.3 70 497-575 20-95 (295)
371 3cvg_A Putative metal binding 27.2 42 0.0014 33.1 3.8 74 493-575 32-115 (294)
372 1dbq_A Purine repressor; trans 26.9 1.8E+02 0.0062 27.8 8.6 65 164-231 7-73 (289)
373 4es6_A Uroporphyrinogen-III sy 26.6 26 0.0009 33.7 2.1 114 121-243 87-206 (254)
374 1nrz_A PTS system, sorbose-spe 26.4 82 0.0028 27.9 5.0 81 150-238 13-93 (164)
375 3heb_A Response regulator rece 25.9 2.8E+02 0.0094 23.2 8.7 57 179-244 15-84 (152)
376 3hly_A Flavodoxin-like domain; 25.6 2.3E+02 0.0078 24.6 8.0 83 166-256 2-90 (161)
377 4edp_A ABC transporter, substr 25.5 29 0.001 34.9 2.3 64 1-75 4-69 (351)
378 2qu7_A Putative transcriptiona 25.4 1.3E+02 0.0043 29.0 7.0 64 164-230 8-72 (288)
379 3gd5_A Otcase, ornithine carba 24.9 5.1E+02 0.018 25.6 13.0 132 33-199 50-188 (323)
380 1bvy_F Protein (cytochrome P45 24.9 1.2E+02 0.0042 27.5 6.2 86 146-244 3-96 (191)
381 2pbq_A Molybdenum cofactor bio 24.8 1.8E+02 0.0061 26.0 7.2 62 166-230 7-77 (178)
382 2j48_A Two-component sensor ki 24.7 1.7E+02 0.0059 22.8 6.8 58 179-245 12-71 (119)
383 2hpg_A ABC transporter, peripl 24.5 70 0.0024 32.1 4.9 61 681-752 147-207 (327)
384 3cs3_A Sugar-binding transcrip 24.3 4.5E+02 0.015 24.7 11.8 115 33-160 120-244 (277)
385 3bvp_A INT, TP901-1 integrase; 24.3 1.6E+02 0.0056 24.8 6.6 23 149-171 24-46 (138)
386 4a29_A Engineered retro-aldol 24.2 1.9E+02 0.0065 27.6 7.4 85 155-248 69-156 (258)
387 4ep1_A Otcase, ornithine carba 24.2 5.5E+02 0.019 25.6 12.4 132 33-199 72-210 (340)
388 3hv2_A Response regulator/HD d 23.9 2.6E+02 0.0088 23.4 8.1 58 179-245 25-84 (153)
389 3eod_A Protein HNR; response r 23.8 1.8E+02 0.0062 23.5 6.9 68 165-245 8-77 (130)
390 1vsq_C Mannose-specific phosph 23.8 78 0.0027 28.1 4.4 81 150-238 16-96 (165)
391 3lft_A Uncharacterized protein 23.6 4.9E+02 0.017 24.9 11.5 112 32-160 134-248 (295)
392 2hxw_A Major antigenic peptide 23.4 1.3E+02 0.0044 27.9 6.4 40 497-546 16-55 (237)
393 2vpn_A Periplasmic substrate b 23.4 72 0.0025 31.8 4.7 61 681-752 129-189 (316)
394 3hdv_A Response regulator; PSI 23.3 1.9E+02 0.0066 23.5 7.0 57 180-245 19-78 (136)
395 2xwv_A Sialic acid-binding per 23.2 76 0.0026 31.5 4.8 61 681-752 132-192 (312)
396 1byk_A Protein (trehalose oper 22.8 1.6E+02 0.0054 27.6 7.0 63 165-230 3-67 (255)
397 3cnb_A DNA-binding response re 22.8 3E+02 0.01 22.4 8.3 57 179-244 19-79 (143)
398 1qpz_A PURA, protein (purine n 22.8 2.2E+02 0.0076 28.2 8.5 69 160-231 54-124 (340)
399 3p9x_A Phosphoribosylglycinami 22.8 4.5E+02 0.015 24.2 10.0 87 151-243 15-103 (211)
400 3rf7_A Iron-containing alcohol 22.7 1.2E+02 0.004 31.1 6.2 95 139-240 28-130 (375)
401 2zay_A Response regulator rece 22.6 1.7E+02 0.006 24.3 6.6 55 180-243 20-76 (147)
402 2q9u_A A-type flavoprotein; fl 22.5 3.8E+02 0.013 27.4 10.4 76 163-246 255-338 (414)
403 3iv7_A Alcohol dehydrogenase I 22.3 49 0.0017 33.9 3.2 80 153-238 26-107 (364)
404 1uuy_A CNX1, molybdopterin bio 22.3 3.9E+02 0.013 23.3 9.5 75 165-241 6-96 (167)
405 1xs5_A 29 kDa protein, membran 22.2 2E+02 0.0069 27.2 7.4 35 501-543 22-56 (241)
406 3okf_A 3-dehydroquinate syntha 22.2 1.2E+02 0.0041 31.2 6.1 95 158-257 56-158 (390)
407 2l69_A Rossmann 2X3 fold prote 22.0 2.7E+02 0.0092 21.3 8.2 65 144-217 56-120 (134)
408 4ecf_A ABC-type phosphate tran 21.6 99 0.0034 29.7 5.2 71 495-575 17-91 (264)
409 4h31_A Otcase, ornithine carba 21.4 6.3E+02 0.022 25.4 12.0 133 33-199 72-213 (358)
410 1p99_A Hypothetical protein PG 21.0 2.1E+02 0.0071 28.0 7.5 35 501-543 57-91 (295)
411 1k68_A Phytochrome response re 21.0 3E+02 0.01 22.2 7.8 58 179-245 13-81 (140)
412 3lua_A Response regulator rece 20.9 2.2E+02 0.0075 23.4 6.9 55 180-243 16-75 (140)
413 3onm_A Transcriptional regulat 20.9 1.5E+02 0.0051 27.3 6.3 67 494-575 40-107 (238)
414 1di6_A MOGA, molybdenum cofact 20.9 1.9E+02 0.0067 26.3 6.7 64 165-230 4-75 (195)
415 1ble_A Fructose permease; phos 20.7 80 0.0027 27.9 3.8 80 151-238 15-94 (163)
416 3f2i_A ALR0221 protein; alpha- 20.6 3.1E+02 0.011 24.1 7.9 92 147-243 28-123 (172)
417 3f6c_A Positive transcription 20.6 2.7E+02 0.0091 22.5 7.3 58 180-245 13-72 (134)
418 3apt_A Methylenetetrahydrofola 20.5 6.1E+02 0.021 24.9 11.0 99 149-249 85-203 (310)
419 4exl_A PBP 1, phosphate-bindin 20.5 1.3E+02 0.0045 28.9 5.8 71 495-575 17-91 (265)
420 2qr3_A Two-component system re 20.4 2.6E+02 0.0088 22.8 7.3 58 179-245 14-78 (140)
421 3tpf_A Otcase, ornithine carba 20.1 6.2E+02 0.021 24.8 12.9 132 33-199 38-177 (307)
422 1p99_A Hypothetical protein PG 20.1 91 0.0031 30.7 4.6 45 29-86 38-82 (295)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=100.00 E-value=7.1e-88 Score=806.05 Aligned_cols=691 Identities=18% Similarity=0.314 Sum_probs=571.7
Q ss_pred ceEEEEEEeecCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCC-CHHHHHHHHHHHHhcCceEEEccCchhh
Q 003958 30 SVVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNH-SGFLALAEALHLMEGQTVAIIGPQDAVT 108 (784)
Q Consensus 30 ~~i~IG~i~~~~~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~-~~~~a~~~~~~li~~~v~aiiGp~~s~~ 108 (784)
++|+||+++|+++. ....|+++|+|+||+++ ++|++++.|+++ ++..+.++++++++++|.+||||.+|..
T Consensus 1 ~~ikIG~l~~~tg~---~~~~a~~lAveeiN~~~-----~~l~~~~~D~~~~~~~~a~~~~~~l~~~~V~aiiG~~~S~~ 72 (823)
T 3kg2_A 1 NSIQIGGLFPRGAD---QEYSAFRVGMVQFSTSE-----FRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKS 72 (823)
T ss_dssp CEEEEEEEEETTCH---HHHHHHHHHHHHTCCSS-----CEEEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCTTT
T ss_pred CcceEEEEeCCCCh---HHHHHHHHHHHHHhcCC-----eEEEEEEEEcCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Confidence 47999999999864 78899999999999986 799999999999 9999999999999999999999999999
Q ss_pred HHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCCCcchhHHHHHHHH
Q 003958 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTL 188 (784)
Q Consensus 109 ~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l 188 (784)
+.+++++++.+++|+|++. .+.. ..++|+||+.|+ ++.++++++++|||++|++|| |++||....+.+++.+
T Consensus 73 ~~a~~~i~~~~~iP~is~~--~~~~--~~~~~~~r~~p~---~~~a~~~l~~~~gw~~v~ii~-d~~~g~~~~~~~~~~~ 144 (823)
T 3kg2_A 73 VNTITSFCGTLHVSFITPS--FPTD--GTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSA 144 (823)
T ss_dssp HHHHHHHHHHTTCEEEECS--CCCS--SCCSSEEECSCC---CHHHHHHHHHHTTCSEEEEEE-CGGGCTHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCceeecc--cCCC--CCCceEEEeCCC---HHHHHHHHHHHCCCCEEEEEE-eCChhHHHHHHHHHHh
Confidence 9999999999999999973 2322 357899999998 789999999999999999999 7889999999999999
Q ss_pred hccCcEEEEeeccCCC--CChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEEecCccccccccC
Q 003958 189 AAKRCRISFKAPLSVE--ATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDTN 266 (784)
Q Consensus 189 ~~~gi~v~~~~~~~~~--~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~ 266 (784)
++.|+||+..+.++.. .+..|+..++++|+++++|+|++++..+++..++++|+++|+.+++|+||+++.+....+.
T Consensus 145 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~- 223 (823)
T 3kg2_A 145 AEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL- 223 (823)
T ss_dssp HHTTCEEEEEECSSCCSSSTTTTTTTHHHHTTTTTCCEEEEECCHHHHHHHHHHHHHHTTTBTTCEEEECSSBSSSSCC-
T ss_pred hccCCceEEEEeecCCCCccchhHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcCCCCeEEEEecccccccch-
Confidence 9999999998877643 2367899999999999999999999999999999999999999999999999854333222
Q ss_pred CCCCCCccccceeeEEEeeecCCchhHHHHHHHHHhhccC-CCCCCCCCCChhHHHHhhHHHHHHHHHHHHhhcCCcccc
Q 003958 267 SPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISRWRNLTDA-KTPNGYIGLNAYGFYAYDTVWLLARAINSFFKQGGNLSF 345 (784)
Q Consensus 267 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~YDAv~~~a~Al~~~~~~~~~~~~ 345 (784)
.+......|++++.++.++.+.+++|.++|+++++. +++.....++.+++.+||||+++|+|++++..++.+...
T Consensus 224 ----~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~la~Al~~~~~~~~~~~~ 299 (823)
T 3kg2_A 224 ----LKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISR 299 (823)
T ss_dssp ----SSSSSSBCEEEEEESSCTTSHHHHHHHHHHTTSCTTTSTTCCSSCCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred ----HHhhcCCCCceEeeeecCCchHHHHHHHHHHhhcccccCCCCccccchhhHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 233345667889998889999999999999998864 233333456788999999999999999999876544321
Q ss_pred ccCCccccccCCcccccc--cccCCchHHHHHHHhccccceeeeEEEecCCCCcCCcEEEEEeeccceEEEEEecCCCCC
Q 003958 346 SKDSRLSDIQGHLRLDSL--RIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVIGTGYRRIGYWSNYSGL 423 (784)
Q Consensus 346 ~~~~~~~~~~g~~~~~~~--~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~g~~~~~~~~I~~~~~~~~~~VG~w~~~~~l 423 (784)
... +..|... ..|.++.+|.++|++++|+|++|+++||++|++....|+|++++++++++||.|++..++
T Consensus 300 ~~~--------~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~I~~~~~~g~~~vg~w~~~~g~ 371 (823)
T 3kg2_A 300 RGN--------AGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKM 371 (823)
T ss_dssp SSC--------CCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSSSCBCSCEEEEEEECSSCEEEEEEEETTTEE
T ss_pred CCC--------CCCccCCCCCcccchHHHHHHHHhcccCCcccCeEECCCCcccccEEEEEEEcCCCCeeEEEEcCCCCc
Confidence 111 2345433 456789999999999999999999999999999889999999999999999999988764
Q ss_pred ceecCccccCCCCCCCCCccccceeecCCCCCCCCCceeccCCCccEEEEecCCCccceeEe----eCCCcceeeeeHHH
Q 003958 424 SVVRPETLYSKPPNRSSSNQRLYSVIWPGQTTQKPRGWVFPNNGRHLRIGVPNRVSFREFVS----VKGSEMTSGFCIDV 499 (784)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~i~W~~~~~~~p~~~c~~~~~~~l~v~~~~~~~~~~~~~----~~~~~~~~G~~~dl 499 (784)
....+ . . ....+++|+|++...+||..+.. .++++++.||++||
T Consensus 372 ~~~~~-------------------------~---~----~~~~~~~l~v~~~~~~P~~~~~~~~~~~~~~~~~~G~~~dl 419 (823)
T 3kg2_A 372 VLTED-------------------------D---T----SGLEQKTVVVTTILESPYVMMKANHAALAGNERYEGYCVDL 419 (823)
T ss_dssp EECCC-------------------------C---C----SSCCCCCEEEEECCCTTTSEECTTGGGCCGGGGEESHHHHH
T ss_pred eeccC-------------------------c---c----cccCCCEEEEEEecCCCcEEEecCccccCCCCceEEEHHHH
Confidence 32110 0 0 01246789999988777765432 24678999999999
Q ss_pred HHHHHHHCCCccceEEeeC---CC-CCCCCChhHHHHHHHcCcccEEEeeEEeecCccccceeccccccccEEEEEeccC
Q 003958 500 FTAAINLLPYAVPYKLIPF---GD-GHNNPSCTELVRLITAGVYDAAVGDIAIITNRTKMADFTQPYIESGLVVVAPVRK 575 (784)
Q Consensus 500 ~~~l~~~l~f~~~~~~~~~---~~-~~~~~~~~g~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~ 575 (784)
++++++++||++++...+. +. ...||+|+|+++.|.+|++|++++++++|++|.+.+|||.||+.+++++++|++.
T Consensus 420 ~~~~a~~l~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~~dfs~py~~~~~~~~v~~~~ 499 (823)
T 3kg2_A 420 AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQ 499 (823)
T ss_dssp HHHHHHHHTCCEEEEECSSCCCCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCCHHHHTTEEECSCSEEECEEEEEECCC
T ss_pred HHHHHHHcCCcEEEEEccCCcccccCCCCCchhhHHHhhccccCcEEecceecchhheeeEEeccchhhCCEEEEEECCC
Confidence 9999999999955555442 21 1256889999999999999999999999999999999999999999999999988
Q ss_pred -CccccccccccccHHHHHHHHHHHHHHHHHhhheecccCCCCCCCc--------------cCCceeehhhhhhhhhccc
Q 003958 576 -LDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPP--------------KRQVVTIFWFSFSTMFFAH 640 (784)
Q Consensus 576 -~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~ 640 (784)
..++++.|+.||++.+|++++++++++++++|+++|+.+.+|+.+. .+++.+++|++++++++|+
T Consensus 500 ~~~~~~~~fl~Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 579 (823)
T 3kg2_A 500 KSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQG 579 (823)
T ss_dssp CCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC-----------------------CHHHHHHHHHHHTTTTSCC--
T ss_pred cccccchHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcChhhccCcccccccccccccccccccHHHHHHHHHHHHHhcC
Confidence 5678999999999999999999999999999999998876664321 2237799999999999998
Q ss_pred cc-ccccchhhHHHHHHHHHHHHHHhhccccceeeEeeccccCCCCChHhhhhCC-CceEEeeCchHHHHHHhhcccCcc
Q 003958 641 KE-KTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSN-YPIGYQVNSFARNYLVDELNIDES 718 (784)
Q Consensus 641 ~~-~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~~~i~~~~dl~~~~-~~i~~~~~~~~~~~~~~~~~~~~~ 718 (784)
.. .|++.++|+++++||+|+||++++|||+|+|+||++++.++|+|++||.+++ .++|+..+++...++++.......
T Consensus 580 ~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~s~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 659 (823)
T 3kg2_A 580 ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFD 659 (823)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHCCSSEEECBSSSHHHHHHHHCCCHHHH
T ss_pred CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCHHHHhhCCCeeEEEEeCCcHHHHHHhccchHHH
Confidence 76 7999999999999999999999999999999999999999999999999865 457888888888898652211111
Q ss_pred Cce----------eCCCHHHHHHHHhcCCcCCCeeEEEechhhhHHHHcCC-CCeEEeCCccccceEEEEeeCCCCC
Q 003958 719 RLV----------PLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTR-CEFSIVGQVFTKNGWGFVSIVSSFY 784 (784)
Q Consensus 719 ~~~----------~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~-c~l~~~~~~~~~~~~~~~~~k~s~~ 784 (784)
+++ .+.+.+++++.+++. ++.+||+.|.+.++|+.+++ |+++++++.+...+||+++||||||
T Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~y~~~~~~c~l~~v~~~~~~~~~~~~~~k~spl 733 (823)
T 3kg2_A 660 KMWTYMRSAEPSVFVRTTAEGVARVRKS---KGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSL 733 (823)
T ss_dssp HHHHHHHHCSSCCCBSSHHHHHHHHHTT---TTSEEEEEEHHHHHHHHTSTTCCEEEESCCSSCEEECCEEETTCSS
T ss_pred HHHHHHHhcCCccccCCHHHHHHHHhcc---CCceEEEechHHHHHHHhcCCCceEEccccccccceeEeecCCChH
Confidence 111 235889999999732 67799999999999988775 9999999999999999999999997
No 2
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=100.00 E-value=1.8e-50 Score=437.62 Aligned_cols=373 Identities=16% Similarity=0.278 Sum_probs=315.6
Q ss_pred CceEEEEEEeecCCcchhhHHHHHHHHHHHHhcCCCC-CCCCEEEEEEecCCC-CHHHHHHHHHHHHhcCceEEEccCch
Q 003958 29 PSVVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTT-LGGTKLKLQMQDCNH-SGFLALAEALHLMEGQTVAIIGPQDA 106 (784)
Q Consensus 29 ~~~i~IG~i~~~~~~~g~~~~~a~~~Ave~IN~~~~i-l~g~~l~~~~~D~~~-~~~~a~~~~~~li~~~v~aiiGp~~s 106 (784)
+++|+||+++|++.. ....|+++|+|+||+++++ |+|++|+++++|++| ++..+++++++|++++|.+||||.+|
T Consensus 3 ~~~i~IG~i~~~sg~---~~~~a~~lAv~eiN~~g~ill~g~~l~~~~~D~~~~d~~~a~~~a~~li~~~V~aiiG~~~S 79 (389)
T 3o21_A 3 PNTISIGGLFMRNTV---QEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSRGVYAIFGFYDQ 79 (389)
T ss_dssp CSEEEEEEEECTTCH---HHHHHHHHHHHHHHSCCCTTTCSSEEEEEEEECCTTCHHHHHHHHHHHHTTTCSCEEECCCT
T ss_pred CceeEEEEEeCCCCH---HHHHHHHHHHHHHhcCccccCCCcEEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEeCCCh
Confidence 679999999999864 7899999999999999999 699999999999988 99999999999999999999999999
Q ss_pred hhHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCCCcchhHHHHHH
Q 003958 107 VTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGD 186 (784)
Q Consensus 107 ~~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~ 186 (784)
..+.++++++..++||+|+++. +.++ ..+|.||+.|+ ++.++++++++++|++|++|| |++||....+.+.+
T Consensus 80 ~~~~a~~~i~~~~~iP~Is~s~--~~~~--~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~ 151 (389)
T 3o21_A 80 MSMNTLTSFCGALHTSFVTPSF--PTDA--DVQFVIQMRPA---LKGAILSLLSYYKWEKFVYLY-DTERGFSVLQAIME 151 (389)
T ss_dssp TTHHHHHHHHHHHTCCEEECSC--CCSS--CCSSEEECSCC---SHHHHHHHHHHHTCCEEEEEE-CSTTCSHHHHHHHH
T ss_pred hHHHHHHHHhccCCCceeecCC--CCcc--CCceEEEEccC---HHHHHHHHHHhCCCCEEEEEE-cCcHHHHHHHHHHH
Confidence 9999999999999999998754 3333 34566777777 789999999999999999999 88999999999999
Q ss_pred HHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEEecCccccccccC
Q 003958 187 TLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDTN 266 (784)
Q Consensus 187 ~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~ 266 (784)
.+++.|+||+..+.++. .+..|++.++++|+++++|+|++++..+.+..++++++++|++.++|+||+++.+....+.
T Consensus 152 ~~~~~g~~v~~~~~~~~-~~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~i~~qa~~~g~~~~~~~~i~~~~~~~~~~~- 229 (389)
T 3o21_A 152 AAVQNNWQVTARSVGNI-KDVQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQVVILGKHSRGYHYMLANLGFTDILL- 229 (389)
T ss_dssp HHHHTTCEEEEEECTTC-CCTHHHHHHHHHHHTTTCCEEEEESCHHHHHHHHHHHHHHCSCSTTCEEEECCTTGGGCCC-
T ss_pred HhhcCCCeEEEEEecCC-CCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEccCCcccccH-
Confidence 99999999998876653 2456899999999999999999999999999999999999999999999998855443322
Q ss_pred CCCCCCccccceeeEEEeeecCCchhHHHHHHHHHhhccCCC-CCCCCCCChhHHHHhhHHHHHHHHHHHHhhcCCcccc
Q 003958 267 SPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISRWRNLTDAKT-PNGYIGLNAYGFYAYDTVWLLARAINSFFKQGGNLSF 345 (784)
Q Consensus 267 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~YDAv~~~a~Al~~~~~~~~~~~~ 345 (784)
.+......|++++....++.+.+++|+++|+++++.+. +.+...++.+++.+||||+++++|++++..++.+...
T Consensus 230 ----~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~~~ 305 (389)
T 3o21_A 230 ----ERVMHGGANITGFQIVNNENPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAEAFRYLRRQRVDVSR 305 (389)
T ss_dssp ----HHHHHTTCEEEEEESCCTTCHHHHHHHHHHTTSCTTTSTTSSSSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCC-
T ss_pred ----HHHhcCCcceEEEEEecCCChhHHHHHHHHHhccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhCccccc
Confidence 12233456788888888899999999999999886432 2222245678999999999999999999765433211
Q ss_pred ccCCccccccCCccc--ccccccCCchHHHHHHHhccccceeeeEEEecCCCCcCCcEEEEEeeccceEEEEEecCCCCC
Q 003958 346 SKDSRLSDIQGHLRL--DSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVIGTGYRRIGYWSNYSGL 423 (784)
Q Consensus 346 ~~~~~~~~~~g~~~~--~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~g~~~~~~~~I~~~~~~~~~~VG~w~~~~~l 423 (784)
... +..| .....|.++..|.++|++++|+|++|+++||++|++....|+|+++.++++++||.|++..||
T Consensus 306 ~~~--------~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g~ 377 (389)
T 3o21_A 306 RGS--------AGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGSRKAGYWNEYERF 377 (389)
T ss_dssp ------------CCSCSSSCCCTTTTHHHHHHHHTCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEEEEETTTEE
T ss_pred CCC--------CCcCCCCCCCCCCCcHHHHHHHHhCcccccceeeeeCCCCCcccceEEEEEEcCCCceeeeEEcCCCCc
Confidence 110 2245 334568889999999999999999999999999998888999999999999999999999886
Q ss_pred cee
Q 003958 424 SVV 426 (784)
Q Consensus 424 ~~~ 426 (784)
...
T Consensus 378 ~~~ 380 (389)
T 3o21_A 378 VPF 380 (389)
T ss_dssp ECC
T ss_pred ccc
Confidence 553
No 3
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=100.00 E-value=5.1e-49 Score=446.26 Aligned_cols=394 Identities=20% Similarity=0.334 Sum_probs=324.9
Q ss_pred CCCceEEEEEEeecCC-------------cchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHH
Q 003958 27 GRPSVVNIGALLSFST-------------NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLM 93 (784)
Q Consensus 27 ~~~~~i~IG~i~~~~~-------------~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li 93 (784)
..+++|+||+++|+|. ..|.....|+++|+|+||+++++|||++|+++++|+++++..|++.+.+++
T Consensus 10 ~~~g~i~IG~l~pl~g~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~llpg~~L~~~i~D~~~~~~~a~~~a~~~l 89 (555)
T 2e4u_A 10 KIEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDNYLLPGVKLGVHILDTCSRDTYALEQSLEFV 89 (555)
T ss_dssp EECCSEEEEEEECCEEECCTTCSEEEECTTTTHHHHHHHHHHHHHHHHCTTSSTTCCEEEEEEECTTCHHHHHHHHHHHH
T ss_pred ecCCCEEEEEEEEeeECCCCCCccccccchhhhHHHHHHHHHHHHHhCCCCCCCCCeEEEEEEECCCChHHHHHHHHHHH
Confidence 4678999999999983 246778899999999999999999999999999999999999999998887
Q ss_pred h-------------------------cCceEEEccCchhhHHHHHHhhhcCCccEEecccCCCCCCc-CCCCceEeecCC
Q 003958 94 E-------------------------GQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSS-LQFPYFVRTTQS 147 (784)
Q Consensus 94 ~-------------------------~~v~aiiGp~~s~~~~~va~~~~~~~ip~Is~~a~~~~l~~-~~~p~~~r~~ps 147 (784)
+ ++|.+||||.+|..+.+++++++.+++|+|+|+++++.|++ .+||+|||+.|+
T Consensus 90 ~~~~~~~~~~ny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~~va~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~p~ 169 (555)
T 2e4u_A 90 RASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPP 169 (555)
T ss_dssp HTTC--------------------CCCCEEEEEECSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCC
T ss_pred hCcCcccCCCCcccCCCccccccccCCceEEEECCCCcHHHHHHHHHHhCcCCceEeCCcCCCccCCcccCCCceeeCCC
Confidence 3 47999999999999999999999999999999999999999 479999999999
Q ss_pred hHHHHHHHHHHHHHcCCcEEEEEEEcCCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhc-CCceEEE
Q 003958 148 DQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL-TESRIIV 226 (784)
Q Consensus 148 ~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~-~~~~vIv 226 (784)
+..++.++++++++|||+||++|++|++||+...+.+++.+++.|+||++.+.++...+..++..++++|++ ++++|||
T Consensus 170 d~~~~~a~~~ll~~fgw~~V~ii~~d~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~~s~a~vIi 249 (555)
T 2e4u_A 170 DFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNICIATAEKVGRSNIRKSYDSVIRELLQKPNARVVV 249 (555)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEESSTTHHHHHHHHHHHHHTTTCEEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEE
T ss_pred hHHHHHHHHHHHHHcCCeEEEEEEeeChHHHHHHHHHHHHHHHCCccEEEEEEeCCCCChHHHHHHHHHHhccCCCCEEE
Confidence 999999999999999999999999999999999999999999999999998888754467889999999964 7999999
Q ss_pred EeccCCcHHHHHHHHHHcCCCCCCeEEEecCccccccccCCCCCCCccccceeeEEEeeecCCchhHHHHH---------
Q 003958 227 VHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDTNSPFPSDVMDDIQGVLTLRTYTPDSVLKRKFI--------- 297 (784)
Q Consensus 227 l~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~--------- 297 (784)
+++...++..+++++.++|+ +++||+++.|....... ......++|++++.++..+.+++++|.
T Consensus 250 ~~~~~~~~~~~~~~~~~~g~---~~~~i~s~~~~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~f~~~~~p~~~p 322 (555)
T 2e4u_A 250 LFMRSDDSRELIAAANRVNA---SFTWVASDGWGAQESIV----KGSEHVAYGAITLELASHPVRQFDRYFQSLNPYNNH 322 (555)
T ss_dssp EECCHHHHHHHHHHHHHTTC---CCEEEECTTTTTCGGGT----TTCHHHHTTCEEEEECCCCCHHHHHHHHTCCTTTCT
T ss_pred EEcCHHHHHHHHHHHHHhcC---CeEEEEeccccccchhh----ccchhhcceEEEEEeccCCCCcHHHHHhhCCcccCC
Confidence 99999999999999999887 68999998776532221 112356789999988766666665544
Q ss_pred ------HHHHhhcc-----------CCCCCCCC-----CCChhHHHHhhHHHHHHHHHHHHhhcCCccccccCCcccccc
Q 003958 298 ------SRWRNLTD-----------AKTPNGYI-----GLNAYGFYAYDTVWLLARAINSFFKQGGNLSFSKDSRLSDIQ 355 (784)
Q Consensus 298 ------~~~~~~~~-----------~~~~~~~~-----~~~~~~~~~YDAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~ 355 (784)
+.|+..|+ .|++++.. .+..+++.+||||+++|+|||++..+.....
T Consensus 323 ~~~~~~~~w~~~f~c~~~~~~~~~~~C~~~e~l~~~~~~~~~~~~~~YdAVya~A~AL~~~~~~~~~~~----------- 391 (555)
T 2e4u_A 323 RNPWFRDFWEQKFQCSLQNKRNHRQVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPQT----------- 391 (555)
T ss_dssp TCTTHHHHHHHHTTCCCC------CCCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHCTTC-----------
T ss_pred CCHHHHHHHHHHcCCCCCCCCccCCCCCCccccccccccccccchhhHHHHHHHHHHHHHHHhhhcCCC-----------
Confidence 45666554 25444332 1446789999999999999999865311000
Q ss_pred CCcccccccccCCchHHHH-HHHhcccc------ceeee-EEEecCCCCcCCcEEEEEee--cc--ceEEEEEecCCCCC
Q 003958 356 GHLRLDSLRIFNGGNLLRD-SILQANMT------GTAGP-ARFNSHGDLINPAYEIINVI--GT--GYRRIGYWSNYSGL 423 (784)
Q Consensus 356 g~~~~~~~~~~~~~~~l~~-~l~~~~f~------g~tG~-v~Fd~~g~~~~~~~~I~~~~--~~--~~~~VG~w~~~~~l 423 (784)
+..|..... .++++|.+ +|++++|+ |.+|+ +.||++|++ ...|+|++++ ++ .+++||.|++ .|
T Consensus 392 -~~~~~~~~~-~~~~~l~~~~L~~v~f~~~~~~~g~~G~~v~fd~~Gd~-~~~y~I~~~~~~~g~~~~~~VG~~~~--~l 466 (555)
T 2e4u_A 392 -TKLCDAMKI-LDGKKLYKEYLLKIQFTAPFNPNKGADSIVKFDTFGDG-MGRYNVFNLQQTGGKYSYLKVGHWAE--TL 466 (555)
T ss_dssp -SSCCGGGTS-CCHHHHHHHHTTCEEECCSSSCCSSSCCEEECCTTSCC-CCCEEEEEEECTTSSCEEEEEEEESS--SE
T ss_pred -CccccccCC-CCcccccHHhHhceeecccccccCCCCCeEEEcCCCCc-cceEEEEEEEecCCcEEEEEEEEecc--eE
Confidence 112332222 35889999 99999999 99997 999999996 6889999996 33 4799999984 23
Q ss_pred ceecCccccCCCCCCCCCccccceeecCCCCCCCCCceec
Q 003958 424 SVVRPETLYSKPPNRSSSNQRLYSVIWPGQTTQKPRGWVF 463 (784)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~i~W~~~~~~~p~~~c~ 463 (784)
.+ +...|.|++ .++|+|+|.
T Consensus 467 ~i------------------~~~~I~W~~--~~~P~S~CS 486 (555)
T 2e4u_A 467 SL------------------DVDSIHWSR--NSVPTSQCS 486 (555)
T ss_dssp EC------------------CGGGCCCTT--SSCCCCCSS
T ss_pred EE------------------eccccccCC--CCCcceeeC
Confidence 22 235799987 689999994
No 4
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=100.00 E-value=2.7e-49 Score=438.63 Aligned_cols=371 Identities=20% Similarity=0.335 Sum_probs=310.9
Q ss_pred CCCceEEEEEEeecCC-------------cchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHH
Q 003958 27 GRPSVVNIGALLSFST-------------NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLM 93 (784)
Q Consensus 27 ~~~~~i~IG~i~~~~~-------------~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li 93 (784)
..+|+|.||++||+|. ..|.+...|+++|+||||+++++|||++|+++++|+|+++..|++++.+++
T Consensus 9 ~~~GDi~iGglf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpg~~L~~~i~D~~~~~~~a~~~~~~ll 88 (479)
T 3sm9_A 9 KIEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDDYLLPGVKLGVHILDTCSRDTYALEQSLEFV 88 (479)
T ss_dssp EECCSEEEEEEECCEEECC-CCSEEEECTTTTHHHHHHHHHHHHHHHHCSSSSTTCCEEEEEEECTTCHHHHHHHHHHHH
T ss_pred ccCCCEEEEEEEEeEECCCCCCCCcccchhhhHHHHHHHHHHHHHHhCCCccCCCCeEeEEEEecCCChHHHHHHHHHHH
Confidence 5689999999999961 156788999999999999999999999999999999999999999999998
Q ss_pred hc-------------------------CceEEEccCchhhHHHHHHhhhcCCccEEecccCCCCCCcC-CCCceEeecCC
Q 003958 94 EG-------------------------QTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSL-QFPYFVRTTQS 147 (784)
Q Consensus 94 ~~-------------------------~v~aiiGp~~s~~~~~va~~~~~~~ip~Is~~a~~~~l~~~-~~p~~~r~~ps 147 (784)
++ +|.+||||.+|..+.+++++++.+++|+|+|+++++.|+++ +||++||+.|+
T Consensus 89 ~~~~~~~~~pny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~ps 168 (479)
T 3sm9_A 89 RASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPP 168 (479)
T ss_dssp HTCC-----------------------CEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTTTTEEESSCC
T ss_pred hCCCccCCCCCCccCCCCccccccCCCceEEEECCCCcHHHHHHHHHHhcCCccEECCCcCCccccCcccCCCeEEeCCc
Confidence 74 59999999999999999999999999999999999999994 79999999999
Q ss_pred hHHHHHHHHHHHHHcCCcEEEEEEEcCCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHH-HHhhcCCceEEE
Q 003958 148 DQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLL-VKVALTESRIIV 226 (784)
Q Consensus 148 ~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l-~~l~~~~~~vIv 226 (784)
+..++.++++++++|||+||++|++|++||+...+.+++.+++.|+||++.+.++......++..++ +.+++++++|||
T Consensus 169 d~~~~~a~~~ll~~fgw~~V~ii~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~~i~~s~a~vIi 248 (479)
T 3sm9_A 169 DFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGRSNIRKSYDSVIRELLQKPNARVVV 248 (479)
T ss_dssp THHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEECC--CHHHHHHHHHHHHTCTTCCEEE
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEecchhhHHHHHHHHHHHHHCCceEEEEEEcCCCCChHHHHHHHHHHHhcCCCeEEE
Confidence 9999999999999999999999999999999999999999999999999999888555578899999 668889999999
Q ss_pred EeccCCcHHHHHHHHHHcCCCCCCeEEEecCccccccccCCCCCCCccccceeeEEEeeecCCchhHHHHHH--------
Q 003958 227 VHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDTNSPFPSDVMDDIQGVLTLRTYTPDSVLKRKFIS-------- 298 (784)
Q Consensus 227 l~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~-------- 298 (784)
+++...++..++++++++|+. ++||+++.|....... ......++|++++.++..+.+++++|+.
T Consensus 249 ~~~~~~~~~~l~~~~~~~g~~---~~wI~s~~w~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~p 321 (479)
T 3sm9_A 249 LFMRSDDSRELIAAASRANAS---FTWVASDGWGAQESII----KGSEHVAYGAITLELASQPVRQFDRYFQSLNPYNNH 321 (479)
T ss_dssp EECCHHHHHHHHHHHHHTTCC---CEEEECTTTTTCHHHH----TTCTTTTTTCEEEEECCCCCHHHHHHHHTCCTTTCT
T ss_pred EEcChHHHHHHHHHHHHhCCE---EEEEEechhhcCcccc----ccccccCceEEEEEeccCCCcchhhHhhccCcCcCC
Confidence 999999999999999999986 7999999876532111 1122567899999999999999888875
Q ss_pred -------HHHhhcc-----------CCCCCCCCC-----CChhHHHHhhHHHHHHHHHHHHhhcCCccccccCCcccccc
Q 003958 299 -------RWRNLTD-----------AKTPNGYIG-----LNAYGFYAYDTVWLLARAINSFFKQGGNLSFSKDSRLSDIQ 355 (784)
Q Consensus 299 -------~~~~~~~-----------~~~~~~~~~-----~~~~~~~~YDAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~ 355 (784)
.|...|+ .|++++... .......+||||+++|+|||+++.+.....
T Consensus 322 ~d~~~~~~w~~~f~C~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~~----------- 390 (479)
T 3sm9_A 322 RNPWFRDFWEQKFQCSLQNKRNHRRVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPNT----------- 390 (479)
T ss_dssp TCTTHHHHHHHHHTCBCCC---CSCBCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTTC-----------
T ss_pred CCHHHHHHHHHHcCCCCCCCcccccCCCCccccccCccccccchhhHHHHHHHHHHHHHHHHHhhcCCC-----------
Confidence 3554443 255544331 123457899999999999999986311100
Q ss_pred CCcccccccccCCchHHH-HHHHhccccce------ee-eEEEecCCCCcCCcEEEEEeec--c--ceEEEEEec
Q 003958 356 GHLRLDSLRIFNGGNLLR-DSILQANMTGT------AG-PARFNSHGDLINPAYEIINVIG--T--GYRRIGYWS 418 (784)
Q Consensus 356 g~~~~~~~~~~~~~~~l~-~~l~~~~f~g~------tG-~v~Fd~~g~~~~~~~~I~~~~~--~--~~~~VG~w~ 418 (784)
...|.....+ ++++|. ++|++++|++. .| ++.||++|++ ...|+|+||+. + .+++||+|+
T Consensus 391 -~~~c~~~~~~-~~~qL~~~~Lk~v~F~~~~~~~~~~g~~v~fd~~G~~-~~~YdI~n~~~~~~~~~~~~VG~~~ 462 (479)
T 3sm9_A 391 -TKLCDAMKIL-DGKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGDG-MGRYNVFNFQNVGGKYSYLKVGHWA 462 (479)
T ss_dssp -SSCCHHHHSC-CHHHHHHHTGGGCCEECTTC-----CCEECCCTTCBC-CCCEEEEEEEESSSCEEEEEEEEES
T ss_pred -CcCCCCCCCc-ChHHHHHHHhcceeeccccCccccCCCeEEECCCCCc-ccceEEEEEEECCCcEEEEEEEEEe
Confidence 1234433333 589999 99999999998 55 6999999996 78999999983 2 368999997
No 5
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=100.00 E-value=1.1e-48 Score=425.67 Aligned_cols=377 Identities=18% Similarity=0.280 Sum_probs=316.6
Q ss_pred CCceEEEEEEeecCCcchhhHHHHHHHHHHHHhcCCCCC-CCCEEEEEEecCC-CCHHHHHHHHHHHHhcCceEEEccCc
Q 003958 28 RPSVVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTL-GGTKLKLQMQDCN-HSGFLALAEALHLMEGQTVAIIGPQD 105 (784)
Q Consensus 28 ~~~~i~IG~i~~~~~~~g~~~~~a~~~Ave~IN~~~~il-~g~~l~~~~~D~~-~~~~~a~~~~~~li~~~v~aiiGp~~ 105 (784)
-|++|+||++||.+. .....|+++|||+||+++++| ++++|.+...|++ +++..+.+.++++++++|.+||||.+
T Consensus 2 ~P~~I~IG~lf~~~~---~~~~~a~~~Av~~iN~~~~ilg~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiiG~~~ 78 (389)
T 4gpa_A 2 FPSSVQIGGLFIRNT---DQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYD 78 (389)
T ss_dssp CCSEEEEEEEECTTC---HHHHHHHHHHHHHHHTCSCTTTCSSEEEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred CCCeEEEEEEEcCCC---hHHHHHHHHHHHHHHhCCCCCCCCEEEEEEEecCCCchHHHHHHHHHHHHhcCCEEEEeCCc
Confidence 478999999999874 567899999999999999998 5667777776655 58889999999999999999999999
Q ss_pred hhhHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCCCcchhHHHHH
Q 003958 106 AVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALG 185 (784)
Q Consensus 106 s~~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~ 185 (784)
|..+.+++++++.++||+++++++.+.. .+|++++|+.+ ++++++++++|+|++|++||+++.++ ...+.+.
T Consensus 79 S~~~~~v~~i~~~~~ip~is~~~~~~~~--~~~~~~~~~~~-----~~a~~~l~~~~~w~~vaii~~~d~~~-~~~~~~~ 150 (389)
T 4gpa_A 79 KRSVHTLTSFCSALHISLITPSFPTEGE--SQFVLQLRPSL-----RGALLSLLDHYEWNCFVFLYDTDRGY-SILQAIM 150 (389)
T ss_dssp TTTHHHHHHHHHHTTCEEEECSCCCSSC--CSSEEECSCCC-----HHHHHHHHHHTTCCEEEEEECSTTCS-HHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCceecccccccc--ccCCccccCCH-----HHHHHHHHHHcCCcEEEEEEecchhh-HHHHHHH
Confidence 9999999999999999999987655432 34666666443 46899999999999999999777665 4567788
Q ss_pred HHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEEecCcccccccc
Q 003958 186 DTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDT 265 (784)
Q Consensus 186 ~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~ 265 (784)
+.+.+.|+||+..+.++ ....++..+++++++.++++|++.+..+++..++++|+++|+++++++|++++++......
T Consensus 151 ~~~~~~g~~v~~~~~~~--~~~~d~~~~l~~i~~~~~~vIv~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~ 228 (389)
T 4gpa_A 151 EKAGQNGWHVSAICVEN--FNDVSYRQLLEELDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHYIIANLGFKDISL 228 (389)
T ss_dssp HHHHTTTCEEEEEECTT--CCHHHHHHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHTCSBTTCEEEECSSBGGGSCC
T ss_pred HHHHhcCceEEEEeecC--CcchhHHHHHHHhhccCCcEEEEEechhHHHHHHHHHHHhCCCCCceEEEEeCccccchhh
Confidence 88999999999887766 5788999999999999999999999999999999999999999999999999876654332
Q ss_pred CCCCCCCccccceeeEEEeeecCCchhHHHHHHHHHhhccCCCCCCCCCCChhHHHHhhHHHHHHHHHHHHhhcCCcccc
Q 003958 266 NSPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAINSFFKQGGNLSF 345 (784)
Q Consensus 266 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~~a~Al~~~~~~~~~~~~ 345 (784)
.+......|+.++....+..+.+++|.++|++.+..........++.+++++||||+++|+||+++.+++.+...
T Consensus 229 -----~~~~~~~~~i~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~YDAV~~~A~Al~~~~~~~~~~~~ 303 (389)
T 4gpa_A 229 -----ERFIHGGANVTGFQLVDFNTPMVTKLMDRWKKLDQREYPGSETPPKYTSALTYDGVLVMAETFRSLRRQKIDISR 303 (389)
T ss_dssp -----HHHHHHBCEEEEEECSCTTSHHHHHHHHHHTTSCTTTSTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred -----hhhhhcccceEEEEeecCCChHHHHHHHHHHHHhhhhcccCCCChhHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 233455678889988999999999999999988764433344567889999999999999999999887654321
Q ss_pred ccCCccccccCCcccccccccCCchHHHHHHHhccccceeeeEEEecCCCCcCCcEEEEEeeccceEEEEEecCCCCCce
Q 003958 346 SKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVIGTGYRRIGYWSNYSGLSV 425 (784)
Q Consensus 346 ~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~g~~~~~~~~I~~~~~~~~~~VG~w~~~~~l~~ 425 (784)
... .+.+.|.....|.+|..|.++|++++|+|++|+|.||++|+|.+..|+|+|++++++++||.|++.+||.+
T Consensus 304 ~~~------~~~~~~~~~~~~~~G~~l~~~l~~v~f~G~tG~v~Fd~~G~r~~~~~~I~~l~~~~~~~VG~W~~~~gl~~ 377 (389)
T 4gpa_A 304 RGN------AGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGPRKVGYWNDMDKLVL 377 (389)
T ss_dssp TTC------CCCTTCSSCCCCTTHHHHHHHHHTCEEEETTEEEEBCTTSCBCSCEEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred cCC------ccccccCCCcccchHHHHHHHHHhCceecCceeEEECCCCCCCCCEEEEEEEECCEEEEEEEEECCCCeEE
Confidence 111 11335566778888999999999999999999999999999988999999999999999999999999877
Q ss_pred ecC
Q 003958 426 VRP 428 (784)
Q Consensus 426 ~~~ 428 (784)
..+
T Consensus 378 ~~~ 380 (389)
T 4gpa_A 378 IQD 380 (389)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 6
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=100.00 E-value=9.1e-49 Score=436.38 Aligned_cols=396 Identities=21% Similarity=0.348 Sum_probs=316.3
Q ss_pred cCCCceEEEEEEeecCCc-----------------chhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHH
Q 003958 26 SGRPSVVNIGALLSFSTN-----------------VGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAE 88 (784)
Q Consensus 26 ~~~~~~i~IG~i~~~~~~-----------------~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~ 88 (784)
...+|+|.||++||+|.. .|.+...|+.+||||||+++++|||++|+++++|+|+++..|++.
T Consensus 12 ~~~~GDi~iGglf~vh~~~~~~~~~~~~c~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~tLg~~i~D~~~~~~~a~~~ 91 (496)
T 3ks9_A 12 ARMDGDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQ 91 (496)
T ss_dssp EEECCSEEEEEEECSBCCCCGGGTTTTCCCCBCTTTTHHHHHHHHHHHHHHHTCSSSSTTCCEEEEEEECTTCHHHHHHH
T ss_pred eecCCCEEEEEEEEeEEcCccCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCCCCCceEeEEEEEcCCCcHHHHHH
Confidence 367899999999998721 245678999999999999999999999999999999999999999
Q ss_pred HHHHH-----------------------------hcCceEEEccCchhhHHHHHHhhhcCCccEEecccCCCCCCc-CCC
Q 003958 89 ALHLM-----------------------------EGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSS-LQF 138 (784)
Q Consensus 89 ~~~li-----------------------------~~~v~aiiGp~~s~~~~~va~~~~~~~ip~Is~~a~~~~l~~-~~~ 138 (784)
+.+++ +++|.+||||.+|..+.+++++++.+++|+|+++++++.|++ .+|
T Consensus 92 a~~ll~~~~~s~~~~~~~n~~C~~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~ 171 (496)
T 3ks9_A 92 SIEFIRDSLISIRDEKDGINRCLPDGQSLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLY 171 (496)
T ss_dssp HHHHHSTTC--------------------------CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTC
T ss_pred HHHHHHhhhccccccCCCCccccCcccccccccCCCceEEEECCCccHHHHHHHHHHhhcceeEECCCcCCccccCccCC
Confidence 99987 348999999999999999999999999999999999999999 479
Q ss_pred CceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhh
Q 003958 139 PYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVA 218 (784)
Q Consensus 139 p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~ 218 (784)
|++||+.|++..++.++++++++|||+||++|++|++||+...+.+++.+++.|+||++.+.++......++..++++|+
T Consensus 172 p~~frt~psd~~~~~ai~~ll~~fgw~~V~li~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~i~ 251 (496)
T 3ks9_A 172 KYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLSIAHSDKIYSNAGEKSFDRLLRKLR 251 (496)
T ss_dssp TTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred CceEEecCChHHHHHHHHHHHHHcCCcEEEEEEeccHHHHHHHHHHHHHHHHcCceEEEEEEECCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988875567889999999999
Q ss_pred cC--CceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEEecCccccccccCCCCCCCccccceeeEEEeeecCCchhHHHH
Q 003958 219 LT--ESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDTNSPFPSDVMDDIQGVLTLRTYTPDSVLKRKF 296 (784)
Q Consensus 219 ~~--~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f 296 (784)
+. ++++|++++...++..+++++++.|+.+ ++.||+++.|....... ......++|++++.++.++.+++++|
T Consensus 252 ~~~~~a~vii~~~~~~~~~~l~~~~~~~g~~~-k~~~i~s~~w~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~f 326 (496)
T 3ks9_A 252 ERLPKARVVVCFCEGMTVRGLLSAMRRLGVVG-EFSLIGSDGWADRDEVI----EGYEVEANGGITIKLQSPEVRSFDDY 326 (496)
T ss_dssp TTTTTTCEEEEECCHHHHHHHHHHHHHHTCCS-CCEEEECTTTTTCHHHH----TTCHHHHTTCEEEEECCCCCHHHHHH
T ss_pred hccCceEEEEEecChHHHHHHHHHHHHhCCCC-cEEEEEechhccccccc----cccccccCceEEEeccCCcCcchHhH
Confidence 84 8999999998889999999999999864 36799998776432211 12335678999999999999999988
Q ss_pred HHH---------------HHhhcc---------------CCCCCCCCC----CChhHHHHhhHHHHHHHHHHHHhhcCCc
Q 003958 297 ISR---------------WRNLTD---------------AKTPNGYIG----LNAYGFYAYDTVWLLARAINSFFKQGGN 342 (784)
Q Consensus 297 ~~~---------------~~~~~~---------------~~~~~~~~~----~~~~~~~~YDAv~~~a~Al~~~~~~~~~ 342 (784)
+.. |...|+ .|++++... .......+|+||+++|+|||+++.+...
T Consensus 327 l~~~~p~~~p~d~~l~~~W~~~f~C~~~~~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~vy~AVyavAhALh~m~~~~~~ 406 (496)
T 3ks9_A 327 FLKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPNFKRICTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALCP 406 (496)
T ss_dssp HTTCCTTTCCSCTTHHHHHHHHTTCBCCC-----CCCSSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred hccCCcCCCCCCHHHHHHHHHHcCCCCCCCccccccccCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHhccCC
Confidence 743 444432 254444322 1122346999999999999999864211
Q ss_pred cccccCCccccccCCcccccccccCCchHHHHHHHhccccceeee-EEEecCCCCcCCcEEEEEeec---c--ceEEEEE
Q 003958 343 LSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGP-ARFNSHGDLINPAYEIINVIG---T--GYRRIGY 416 (784)
Q Consensus 343 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~~f~g~tG~-v~Fd~~g~~~~~~~~I~~~~~---~--~~~~VG~ 416 (784)
.. ...|.....+ ++++|.++|++++|.+.+|+ +.||++|+. ...|+|+||+. + .+++||+
T Consensus 407 ~~------------~~~c~~~~~~-~~~qL~~~Lk~v~f~~~~g~~v~fd~~gd~-~~~YdI~n~~~~~~~~~~~~~VG~ 472 (496)
T 3ks9_A 407 GH------------VGLCDAMKPI-DGSKLLDFLIKSSFIGVSGEEVWFDEKGDA-PGRYDIMNLQYTEANRYDYVHVGT 472 (496)
T ss_dssp TC------------SSCCGGGSSC-CHHHHHHHHHTCEEECTTSCEEECCTTSCC-CCEEEEEEEEECC--CEEEEEEEE
T ss_pred CC------------CCCCcCCCCC-CHHHHHHHHHhcCCcCCCCCEEEECCCCCc-cceEEEEEEEECCCCCEEEEEEEE
Confidence 10 1234444344 58999999999999999995 999999995 78999999973 2 3689999
Q ss_pred ecCCCCCceecCccccCCCCCCCCCccccceeecCCCCCCCCCc
Q 003958 417 WSNYSGLSVVRPETLYSKPPNRSSSNQRLYSVIWPGQTTQKPRG 460 (784)
Q Consensus 417 w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~W~~~~~~~p~~ 460 (784)
|+.. .|.++ ...| |.++..++|++
T Consensus 473 ~~~~-~l~i~------------------~~~i-w~~~~~~vP~~ 496 (496)
T 3ks9_A 473 WHEG-VLNID------------------DYKI-QMNKSGLVPRG 496 (496)
T ss_dssp EETT-EEEEC------------------TTTC------------
T ss_pred EeCC-eEEEe------------------hhhc-ccCCCCCCCCC
Confidence 9743 23332 2346 87777777764
No 7
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=100.00 E-value=3.6e-49 Score=435.44 Aligned_cols=389 Identities=19% Similarity=0.318 Sum_probs=322.9
Q ss_pred CCCceEEEEEEeecCC-----cchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc--CceE
Q 003958 27 GRPSVVNIGALLSFST-----NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG--QTVA 99 (784)
Q Consensus 27 ~~~~~i~IG~i~~~~~-----~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~--~v~a 99 (784)
...++|+||+++|++. ..|.....|+++|+|+||++ |+++|++|+++++|+++++..++..+++|+.+ +|.+
T Consensus 10 ~~~~~i~IG~~~plsG~~a~~~~g~~~~~~~~lAv~~iN~~-g~l~g~~l~l~~~D~~~~~~~a~~~a~~li~~~~~v~a 88 (433)
T 4f11_A 10 PSSPPLSIMGLMPLTKEVAKGSIGRGVLPAVELAIEQIRNE-SLLRPYFLDLRLYDTECDNAKGLKAFYDAIKYGPNHLM 88 (433)
T ss_dssp -CCCEEEEEEEECCCTTSTTHHHHHHHHHHHHHHHHHHHHT-TTTTTCEEEEEEEECTTCHHHHHHHHHHHHHHSCCCSE
T ss_pred CCCCceEEEEEEEecCCCCCCccchhHHHHHHHHHHHHhcc-CCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCCceEE
Confidence 4567999999999984 46788999999999999999 78889999999999999999999999999985 8999
Q ss_pred EEccCchhhHHHHHHhhhcCCccEEecccCCCCCCc-CCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCCCcc
Q 003958 100 IIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSS-LQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGR 178 (784)
Q Consensus 100 iiGp~~s~~~~~va~~~~~~~ip~Is~~a~~~~l~~-~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~ 178 (784)
||||.+|..+.+++++++.+++|+|+++++++.+++ ..||++||+.|++..++.++++++++++|++|++|++|++||+
T Consensus 89 viG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~~~g~ 168 (433)
T 4f11_A 89 VFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRFS 168 (433)
T ss_dssp EEECCSHHHHHHHHHTHHHHTCEEEESSCCCGGGGCTTTCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHH
T ss_pred EECCCcchHHHHHHHHHHhcCceEEEcccCCccccccccCCceEEecCchHHHHHHHHHHHHHcCCcEEEEEEecchhhH
Confidence 999999999999999999999999999999999998 4799999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEEecCc
Q 003958 179 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSW 258 (784)
Q Consensus 179 ~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~ 258 (784)
...+.+++.+++.|+||+..+.++ .|+..++++|+++++|+|++++...++..++++++++|+..++++||++++
T Consensus 169 ~~~~~~~~~~~~~g~~v~~~~~~~-----~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~ 243 (433)
T 4f11_A 169 EVRNDLTGVLYGEDIEISDTESFS-----NDPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWIIPGW 243 (433)
T ss_dssp HHHHHHHHHSSSSSCEEEEEEEES-----SCCHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTCCSTTCEEEEESC
T ss_pred HHHHHHHHHHHHcCceEEEEeccC-----cCHHHHHHHHhhCCCeEEEEeCcHHHHHHHHHHHHHcCCCCCCeEEEEcCc
Confidence 999999999999999999988886 257889999999999999999999999999999999999988899999987
Q ss_pred cccccc--------cCCCCCCCccccceeeEEEeeecCCc--------hhHHHHHHHHHhh-ccCCCCCCCCCCChhHHH
Q 003958 259 LSTALD--------TNSPFPSDVMDDIQGVLTLRTYTPDS--------VLKRKFISRWRNL-TDAKTPNGYIGLNAYGFY 321 (784)
Q Consensus 259 ~~~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~~ 321 (784)
....+. ...+......+..+|++++.++.+.. +..++|.++|+++ ++ ..++.++..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~~~-------~~~~~~a~~ 316 (433)
T 4f11_A 244 YEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRSG-------VGPSKFHGY 316 (433)
T ss_dssp SCTTTTTCC------CCSCHHHHHHHHTTCEEEEECSSCCCCCCCTTSCCHHHHHHHHHHHHTT-------SCCCTTHHH
T ss_pred chHhHhcccccCCCCCCCCHHHHHHHHhCEEEEEEeecCCCCCcccCCCCHHHHHHHHHHhcCC-------CCcccchhh
Confidence 332221 00111122346788999998766532 3478899999887 43 356778899
Q ss_pred HhhHHHHHHHHHHHHhhcCCccccccCCccccccCCcccccccccCCchHHHHHHHhccccceeeeEEEecCCCCcCCcE
Q 003958 322 AYDTVWLLARAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAY 401 (784)
Q Consensus 322 ~YDAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~g~~~~~~~ 401 (784)
+||||+++++|++++..+..... .+ ..+.......+.++++|.++|++++|+|++|+++| ++|++ ...|
T Consensus 317 ~YDAv~~la~Al~~a~~~~~~~~--~~-------~~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~f-~~Gd~-~~~~ 385 (433)
T 4f11_A 317 AYDGIWVIAKTLQRAMETLHASS--RH-------QRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVF-RNGER-MGTI 385 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSS--SC-------CCGGGCSSCCHHHHHHHHHHHHTCEEEETTEEEEE-ETTEE-ECEE
T ss_pred HHHHHHHHHHHHHHHHHHHhccC--CC-------CcccccccccHHHHHHHHHHHHhcEEEccceEEEE-ecCce-eeeE
Confidence 99999999999999865421100 00 00000011133458999999999999999999999 89997 5899
Q ss_pred EEEEeeccceEEEEEecCCCC-CceecCccccCCCCCCCCCccccceeecCCCCCCC
Q 003958 402 EIINVIGTGYRRIGYWSNYSG-LSVVRPETLYSKPPNRSSSNQRLYSVIWPGQTTQK 457 (784)
Q Consensus 402 ~I~~~~~~~~~~VG~w~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~i~W~~~~~~~ 457 (784)
+|++++++++++||.|++... |.+ ....|.|+++.+++
T Consensus 386 ~I~~~~~g~~~~VG~~~~~~~~l~~------------------~~~~i~W~~~~~P~ 424 (433)
T 4f11_A 386 KFTQFQDSREVKVGEYNAVADTLEI------------------INDTIRFQGSEPPK 424 (433)
T ss_dssp EEEEEETTEEEEEEEEETTTTEEEE------------------CTTTCCCSSSSCCC
T ss_pred EEEEEECCceEEEEEEECCCCeEEE------------------eCCceECCCCCCCC
Confidence 999999999999999986532 211 22478999887443
No 8
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=100.00 E-value=2.4e-48 Score=422.85 Aligned_cols=373 Identities=18% Similarity=0.287 Sum_probs=309.0
Q ss_pred ceEEEEEEeecCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCH-HHHHHHHHHHHhcCceEEEccCchhh
Q 003958 30 SVVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSG-FLALAEALHLMEGQTVAIIGPQDAVT 108 (784)
Q Consensus 30 ~~i~IG~i~~~~~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~-~~a~~~~~~li~~~v~aiiGp~~s~~ 108 (784)
++|+||+++|+++..|.....|+++|+|+||+++++|+|++|+++++|+++++ ..+..+++++++++|.+||||.+|..
T Consensus 3 ~~ikIG~~~~~s~~~G~~~~~a~~lAv~eiN~~ggil~g~~l~~~~~D~~~~~~~~~~~~~~~l~~~~V~aiiG~~~S~~ 82 (393)
T 3om0_A 3 SSLRMAAILDDQTVCGRGERLALALAREQINGIIEVPAKARVEVDIFELQRDSQYETTDTMCQILPKGVVSVLGPSSSPA 82 (393)
T ss_dssp CEEEEEEEECCCCSSCCCHHHHHHHHHHHHHHSCCSSCCCEEEEEEEECCSSCHHHHHHHHHHHGGGCCSCEECCSSCHH
T ss_pred cceeEEEEecCCCcccHHHHHHHHHHHHHHhcCcccccCcEEEEEEEecCCCchhHHHHHHHHHHhcCcEEEECCCCchh
Confidence 47999999999998999999999999999999999999999999999999975 45668889998889999999999954
Q ss_pred -HHHHHHhhhcCCccEEecccCCCCCCc-CCCCce--EeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCCCcchhHHHH
Q 003958 109 -SHVVSHVANELQVPLLSFSATDPTLSS-LQFPYF--VRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAAL 184 (784)
Q Consensus 109 -~~~va~~~~~~~ip~Is~~a~~~~l~~-~~~p~~--~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l 184 (784)
+.+++++++.+++|+|++++++ ++ ..||++ ||+.|++..++.++++++++++|++|++||+|++||+...+.+
T Consensus 83 ~~~a~~~i~~~~~ip~is~~a~~---~~~~~~~~~~~fr~~p~~~~~~~~~~~~~~~~g~~~vaii~~~~~~g~~l~~~~ 159 (393)
T 3om0_A 83 SASTVSHICGEKEIPHIKVGPEE---TPRLQYLRFASVSLYPSNEDVSLAVSRILKSFNYPSASLICAKAECLLRLEELV 159 (393)
T ss_dssp HHHHHHHHHHHHTCCEEECSCCC---CC----CCSCCEESSCCHHHHHHHHHHHHHHTTSCCEEEEESSTTHHHHTHHHH
T ss_pred HHHHHHHHHhccCCCeEeccCCc---CccccccccceEEecCCHHHHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHHH
Confidence 5799999999999999998764 33 468998 9999999999999999999999999999999999998776655
Q ss_pred HHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEEecCccccccc
Q 003958 185 GDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALD 264 (784)
Q Consensus 185 ~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~ 264 (784)
+.+.+.|++|+... ++ +..|++.++++|+++++|+|++++...++..++++++++|+..+.|+||++++.....+
T Consensus 160 -~~~~~~g~~v~~~~-~~---~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~ 234 (393)
T 3om0_A 160 -RGFLISKETLSVRM-LD---DSRDPTPLLKEIRDDKVSTIIIDANASISHLVLRKASELGMTSAFYKYILTTMDFPILH 234 (393)
T ss_dssp -HHHHHSSSCEEEEE-CC----CCCSHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHTTTTSTTCEEEECCTTGGGCC
T ss_pred -HhhhccCCeEEEEe-cC---CCCCHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEecccccccc
Confidence 44677899997654 43 45689999999999999999999999999999999999999998999999887554333
Q ss_pred cCCCCCCCccccceeeEEEeeecCCchhHHHHHHHHHhhccC-CCCCCCCCCChhHHHHhhHHHHHHHHHHHHhhcCCcc
Q 003958 265 TNSPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISRWRNLTDA-KTPNGYIGLNAYGFYAYDTVWLLARAINSFFKQGGNL 343 (784)
Q Consensus 265 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~YDAv~~~a~Al~~~~~~~~~~ 343 (784)
.. .......|++++....++.+.+++|.++|+++++. |...+...++.+++.+|||++++++|++++.+... .
T Consensus 235 l~-----~~~~~~~~~~g~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~a~~~YDAv~~la~Al~~~~~~~~-~ 308 (393)
T 3om0_A 235 LD-----GIVEDSSNILGFSMFNTSHPFYPEFVRSLNMSWRENCEASTYPGPALSAALMFDAVHVVVSAVRELNRSQE-I 308 (393)
T ss_dssp CT-----TTCCSSCSEEEEECCCTTSTTHHHHHHHHHHHHTTTSCGGGCCSCCHHHHHHHHHHHHHHHHHHHHTTTSC-C
T ss_pred hh-----hhhccCCcEEEEEEecCCccHHHHHHHHHHHHhhhhccCCCCCCCchHHHHHHhHHHHHHHHHHHHhhccc-C
Confidence 21 12244567888888888889999999999988863 21111124677899999999999999999854221 1
Q ss_pred ccccCCccccccCCcccccccccCCchHHHHHHHhccccceeeeEEEecCCCCcCCcEEEEEeeccceEEEEEecCCCCC
Q 003958 344 SFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVIGTGYRRIGYWSNYSGL 423 (784)
Q Consensus 344 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~g~~~~~~~~I~~~~~~~~~~VG~w~~~~~l 423 (784)
. .....|.....|.++..|.++|++++|+|++|+++||++|++....|+|++++++++++||.|++..||
T Consensus 309 ~----------~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~gl 378 (393)
T 3om0_A 309 G----------VKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILEKSRQGHREIGVWYSNRTL 378 (393)
T ss_dssp C----------CCCCCTTCCCCCTTHHHHHHHHTTCCEEETTEEECBCTTSCBCSCEEEEEEEETTEEEEEEEEECC---
T ss_pred c----------CCCcCCCCCCcccCchHHHHHHHhCCCCCccceEEeCCCCcccceeEEEEEeccCCceEeeeEcCCCCc
Confidence 0 013467777778889999999999999999999999999998889999999999999999999998887
Q ss_pred cee
Q 003958 424 SVV 426 (784)
Q Consensus 424 ~~~ 426 (784)
.+.
T Consensus 379 ~~~ 381 (393)
T 3om0_A 379 AMN 381 (393)
T ss_dssp ---
T ss_pred ccc
Confidence 654
No 9
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=100.00 E-value=6.5e-49 Score=436.95 Aligned_cols=374 Identities=22% Similarity=0.380 Sum_probs=285.6
Q ss_pred cCCCceEEEEEEeecCC-------------cchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 003958 26 SGRPSVVNIGALLSFST-------------NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHL 92 (784)
Q Consensus 26 ~~~~~~i~IG~i~~~~~-------------~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~l 92 (784)
...+++|+||+++|+|. ..|.+...|+++|+||||+++++|||++|+++++|+|+++..|++.+.++
T Consensus 11 ~~~~gdi~IG~lf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~~L~~~i~D~~~~~~~a~~~a~~l 90 (481)
T 3mq4_A 11 IRIEGDVTLGGLFPVHAKGPSGVPCGDIKRENGIHRLEAMLYALDQINSDPNLLPNVTLGARILDTCSRDTYALEQSLTF 90 (481)
T ss_dssp EEECCSEEEEEEECSBCCC-----CCSBCTTTTHHHHHHHHHHHHHHTTCSSSSSSCCEEEEEEECTTCHHHHHHHHGGG
T ss_pred cccCCCEEEEEEEEceeCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCcCCCceEEEEEEeCCCChHHHHHHHHHH
Confidence 35788999999999983 25778899999999999999999999999999999999999999999998
Q ss_pred Hh-----------------------cCceEEEccCchhhHHHHHHhhhcCCccEEecccCCCCCCc-CCCCceEeecCCh
Q 003958 93 ME-----------------------GQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSS-LQFPYFVRTTQSD 148 (784)
Q Consensus 93 i~-----------------------~~v~aiiGp~~s~~~~~va~~~~~~~ip~Is~~a~~~~l~~-~~~p~~~r~~ps~ 148 (784)
++ ++|.+||||.+|..+.+++++++.+++|+|+|+++++.|++ .+||++||+.|++
T Consensus 91 l~~~~~~~~pny~C~~~~~~~~~~~~~v~aiiG~~~S~~s~ava~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd 170 (481)
T 3mq4_A 91 VQALIQKDTSDVRCTNGEPPVFVKPEKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPD 170 (481)
T ss_dssp GGGGSCCCC--------------CCCCEEEEECCSSHHHHHHHHHHHTTTTCCEEESSCCCGGGGCTTTTTTEEESSCCT
T ss_pred HhCCcccCCCCcccCCCCCcccccCCCcEEEEcCCCcHHHHHHHHHHHhCCCCEEccccCCccccCcccCCceEEecCch
Confidence 86 46999999999999999999999999999999999999999 5799999999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEEcCCCcchhHHHHHHHHhc-cCcEEEEeeccCCCCChh--HHHHHHHHhh-cCCceE
Q 003958 149 QYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAA-KRCRISFKAPLSVEATED--EITDLLVKVA-LTESRI 224 (784)
Q Consensus 149 ~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~-~gi~v~~~~~~~~~~~~~--d~~~~l~~l~-~~~~~v 224 (784)
..++.++++++++|||+||++|++|++||+...+.+++.+++ .|+||++.+.++...... ++..++++++ +++++|
T Consensus 171 ~~~~~a~~~ll~~fgw~~V~li~~d~~~G~~~~~~~~~~~~~~~Gi~va~~~~i~~~~~~~~~d~~~~l~~i~~~s~a~v 250 (481)
T 3mq4_A 171 SFQAQAMVDIVKALGWNYVSTLASEGSYGEKGVESFTQISKEAGGLSIAQSVRIPQERKDRTIDFDRIIKQLLDTPNSRA 250 (481)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEC---CHHHHHHHHHHHHCC---CCCEECCCCCCCCC------CCSHHHHCCCCC----C
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEEcchhHHHHHHHHHHHHHHhCCEEEEEEEEcCCCCccchHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999999999999999999999998875 799999988887543333 7888999998 589999
Q ss_pred EEEeccCCcHHHHHHHHHHcCCCCCCeEEEecCccccccccCCCCCCCccccceeeEEEeeecCCchhHHHHHHH-----
Q 003958 225 IVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDTNSPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISR----- 299 (784)
Q Consensus 225 Ivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~----- 299 (784)
||+++...++..+++++++.|+.+ +++||+++.|....... ......++|.+++.++..+.+++++|+..
T Consensus 251 Ii~~~~~~~~~~l~~~~~~~g~~~-~~~wI~s~~w~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~ 325 (481)
T 3mq4_A 251 VVIFANDEDIKQILAAAKRADQVG-HFLWVGSDSWGSKINPL----HQHEDIAEGAITIQPKRATVEGFDAYFTSRTLEN 325 (481)
T ss_dssp EEECCCSSHHHHHC-----------CCCEEEC---------------------CCCEEEEECCCCCHHHHHHHHTCCTTT
T ss_pred EEEEEChHHHHHHHHHHHHccCCc-ceEEEEECccccccccc----cccchhhccEEEEecCcCccccHHHHhhcCCcCc
Confidence 999999999999999999999864 48999999876533221 12246688999999999999999988653
Q ss_pred ----------HHhhcc---------------CCCCCCCCC------CChhHHHHhhHHHHHHHHHHHHhhcCCccccccC
Q 003958 300 ----------WRNLTD---------------AKTPNGYIG------LNAYGFYAYDTVWLLARAINSFFKQGGNLSFSKD 348 (784)
Q Consensus 300 ----------~~~~~~---------------~~~~~~~~~------~~~~~~~~YDAv~~~a~Al~~~~~~~~~~~~~~~ 348 (784)
|+..|+ .|++++... .......+||||+++|+|||+++.+.....
T Consensus 326 ~p~d~~~~~~w~~~f~C~~~~~~~~~~~~~~~Ct~~e~l~~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~~---- 401 (481)
T 3mq4_A 326 NRRNVWFAEYWEENFNCKLTISGSKKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCADY---- 401 (481)
T ss_dssp CTTCTTHHHHHHHHHTCCC------------CCCSCCCTTTSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred CCCCHHHHHHHHHhcCCCCCCccccccccCCCCCCccccCcCCcccccchhhhHHHHHHHHHHHHHHHHHhhCCCC----
Confidence 444332 255544332 114456799999999999999976421110
Q ss_pred CccccccCCcccccccccCCchHHHHHHHhccccceee-eEEEecCCCCcCCcEEEEEeec---c--ceEEEEEec
Q 003958 349 SRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAG-PARFNSHGDLINPAYEIINVIG---T--GYRRIGYWS 418 (784)
Q Consensus 349 ~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~~f~g~tG-~v~Fd~~g~~~~~~~~I~~~~~---~--~~~~VG~w~ 418 (784)
...|.....+ ++++|.++|++++|++.+| .+.||++|++ ...|+|+||+. + .+++||+|+
T Consensus 402 --------~~~c~~~~~~-~~~qL~~~Lk~v~F~~~~G~~v~fd~~Gd~-~~~YdI~n~~~~~~~~~~~~~VG~~~ 467 (481)
T 3mq4_A 402 --------RGVCPEMEQA-GGKKLLKYIRNVNFNGSAGTPVMFNKNGDA-PGRYDIFQYQTTNTSNPGYRLIGQWT 467 (481)
T ss_dssp ----------CCHHHHTS-CHHHHHHHHHTCEEECTTSSEEECCTTSCC-CCEEEEEEEC-----CCCEEEEEEEE
T ss_pred --------CCCCCCCCCc-CHHHHHHHHhcceeecCCCCEEEECCCCCC-ceeEEEEEEEECCCCcEEEEEEEEEc
Confidence 1134433344 5899999999999999999 6999999995 78999999972 2 468999998
No 10
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=100.00 E-value=1.4e-47 Score=417.41 Aligned_cols=374 Identities=20% Similarity=0.278 Sum_probs=318.6
Q ss_pred CceEEEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCC-CCHHHHHHHHHHHHhcCceEEEccCch
Q 003958 29 PSVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCN-HSGFLALAEALHLMEGQTVAIIGPQDA 106 (784)
Q Consensus 29 ~~~i~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~-~~~~~a~~~~~~li~~~v~aiiGp~~s 106 (784)
+++|+||+++|++ +..|.....|+++|+|+||+++++|+|++|++++.|+. .|+..+...++++++++|.+||||.+|
T Consensus 2 ~~~i~IG~l~~~sg~~~g~~~~~a~~lAv~eiN~~ggil~~~~l~~~~~~~~~~d~~~~~~~a~~l~~~~V~aiiG~~~S 81 (395)
T 3h6g_A 2 THVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHS 81 (395)
T ss_dssp CEEEEEEEEEEESSSCSCCHHHHHHHHHHHHHHHCSSSSSSEEEEEEEEEEETTCHHHHHHHHHHHHHHCCSCEECCSSH
T ss_pred CcceEEEEEecCCCcccchHHHHHHHHHHHHHhcCccccCCceEEEEEeecCCcChHHHHHHHHHhhhcCcEEEECCCCh
Confidence 5789999999997 45688899999999999999999998899999998877 588889999999999999999999999
Q ss_pred hhHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCCCcchhHHHHHH
Q 003958 107 VTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGD 186 (784)
Q Consensus 107 ~~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~ 186 (784)
..+.+++++++.+++|+|+++++++.++++ .+|+||+.|++..++.++++++++++|++|++|+ |++||....+.+++
T Consensus 82 ~~~~a~~~~~~~~~ip~is~~~~~~~l~~~-~~~~~r~~~~~~~~~~~~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~~ 159 (395)
T 3h6g_A 82 SSANAVQSICNALGVPHIQTRWKHQVSDNK-DSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVY-DDSTGLIRLQELIK 159 (395)
T ss_dssp HHHHHHHHHHHHTTCCEEECSCCCCCTTCC-CCSEEEEEECHHHHHHHHHHHHHHTTCSEEEEEE-SSTHHHHHTHHHHT
T ss_pred hHHHHHHHHHhcCCCCeEeeccCccccccc-CceEEEecCCHHHHHHHHHHHHHHCCCeEEEEEE-EChhHHHHHHHHHH
Confidence 999999999999999999999999888764 5789999999999999999999999999999998 77899999999999
Q ss_pred HHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEEecCccccccccC
Q 003958 187 TLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDTN 266 (784)
Q Consensus 187 ~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~ 266 (784)
.+++.|+||+... ++ .+..|+..++++|+++++|+|++++...++..++++++++|+..+.|+|++++......+..
T Consensus 160 ~~~~~g~~v~~~~-~~--~~~~d~~~~l~~i~~~~~~vi~~~~~~~~~~~~~~qa~~~gl~~~~~~~i~~~~~~~~~~~~ 236 (395)
T 3h6g_A 160 APSRYNLRLKIRQ-LP--ADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALDVE 236 (395)
T ss_dssp GGGTSSCEEEEEE-CC--SSGGGGHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCSTTCEEEECCTTGGGBCCT
T ss_pred hhhcCCceEEEEE-eC--CCchhHHHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHccccCCceEEEEecCceeEechH
Confidence 9999999999875 76 45789999999999999999999999999999999999999999999999987543322221
Q ss_pred CCCCCCccccceeeEEEeeecCCchhHHHHHHHHHhhccCC-C----CCCCCCCChhHHHHhhHHHHHHHHHHHHhhcCC
Q 003958 267 SPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISRWRNLTDAK-T----PNGYIGLNAYGFYAYDTVWLLARAINSFFKQGG 341 (784)
Q Consensus 267 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~----~~~~~~~~~~~~~~YDAv~~~a~Al~~~~~~~~ 341 (784)
.....-.++.++.+..++++..++|.++|++++... + ......++.+++.+|||++++++|++++.....
T Consensus 237 -----~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~aa~~YDav~~~a~Al~~a~~~~~ 311 (395)
T 3h6g_A 237 -----PYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTV 311 (395)
T ss_dssp -----TTTTSCCEEEEEECSCTTSHHHHHHHHHHHHC------CCSSCBCTTCCCHHHHHHHHHHHHHHHHHHTCTTCCC
T ss_pred -----HhccCccceEEEEEecCCcHHHHHHHHHHHhcccccCcccCCCcCCCccchhHHHHHhHHHHHHHHHHhhhcCCC
Confidence 111111235677777888899999999999865321 1 111112567899999999999999998743211
Q ss_pred ccccccCCccccccCCcccccccccCCchHHHHHHHhccccceeeeEEEec-CCCCcCCcEEEEEeeccceEEEEEecCC
Q 003958 342 NLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNS-HGDLINPAYEIINVIGTGYRRIGYWSNY 420 (784)
Q Consensus 342 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~-~g~~~~~~~~I~~~~~~~~~~VG~w~~~ 420 (784)
. ...|.....|.++..|.++|++++|+|++|+++||+ +|++....|+|++++++++++||.|++.
T Consensus 312 ~--------------~~~c~~~~~~~~~~~l~~al~~~~~~G~tG~i~fd~~~G~~~~~~~~i~~~~~~~~~~vG~w~~~ 377 (395)
T 3h6g_A 312 S--------------SLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPA 377 (395)
T ss_dssp C--------------CCCTTSCCCCTTHHHHHHHHHHCEEEETTEEEECCTTTSEECCCCEEEEEEETTEEEEEEEEETT
T ss_pred c--------------CCCCCCCCcCcccHHHHHHHhcCCCcCcceeeEecCCCCeecCCeEEEEEeccCCceEEEEEcCC
Confidence 1 346777778889999999999999999999999999 9999888999999999999999999998
Q ss_pred CCCcee
Q 003958 421 SGLSVV 426 (784)
Q Consensus 421 ~~l~~~ 426 (784)
.|+.+.
T Consensus 378 ~g~~~~ 383 (395)
T 3h6g_A 378 SGLNMT 383 (395)
T ss_dssp TEECCC
T ss_pred CCcccc
Confidence 886654
No 11
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=100.00 E-value=1.6e-47 Score=413.35 Aligned_cols=367 Identities=18% Similarity=0.295 Sum_probs=292.4
Q ss_pred ceEEEEEEeecCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCC-CHHHHHHHHHHHHhcCceEEEccCchhh
Q 003958 30 SVVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNH-SGFLALAEALHLMEGQTVAIIGPQDAVT 108 (784)
Q Consensus 30 ~~i~IG~i~~~~~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~-~~~~a~~~~~~li~~~v~aiiGp~~s~~ 108 (784)
++|+||+++++++ ...+.|+++|+|+||++ |++|++++.|+++ |+..+.++++++++++|.+||||.+|..
T Consensus 1 ~~i~IG~i~~~sg---~~~~~~~~lAv~~iN~~-----g~~l~~~~~d~~~~d~~~a~~~~~~li~~~V~aiiG~~~S~~ 72 (376)
T 3hsy_A 1 NSIQIGGLFPRGA---DQEYSAFRVGMVQFSTS-----EFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKS 72 (376)
T ss_dssp CEEEEEEEEETTC---HHHHHHHHHHHHHTCCS-----SCEEEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCTTT
T ss_pred CceeEEEEeCCCC---HHHHHHHHHHHHHHhcC-----CeEEEEEEeecCCCChHHHHHHHHHHHhcCcEEEECCCchhH
Confidence 3799999999985 46789999999999988 6899999999654 9999999999999999999999999999
Q ss_pred HHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCCCcchhHHHHHHHH
Q 003958 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTL 188 (784)
Q Consensus 109 ~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l 188 (784)
+.+++++++.+++|+|++++++ ....+|+||+.|+ ++.++++++++++|++|++|+ |++||....+.+++.+
T Consensus 73 ~~av~~~~~~~~ip~is~~~~~----~~~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~~~ 144 (376)
T 3hsy_A 73 VNTITSFCGTLHVSFITPSFPT----DGTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSA 144 (376)
T ss_dssp HHHHHHHHHHHTCEEEECSCCC----CSCCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHHHHH
T ss_pred HHHHHHHhccCcCceeecCCCC----cccCCceEEeCcc---HHHHHHHHHHhcCCCEEEEEE-eCchhHHHHHHHHHHh
Confidence 9999999999999999987632 2346789999887 789999999999999999999 8999999999999999
Q ss_pred hccCcEEEEeeccCCC--CChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEEecCccccccccC
Q 003958 189 AAKRCRISFKAPLSVE--ATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDTN 266 (784)
Q Consensus 189 ~~~gi~v~~~~~~~~~--~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~ 266 (784)
++.|+||+....++.. .+..|++.++++|+++++|+|++++....+..++++++++|+..++|+||++++.....+.
T Consensus 145 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~~~- 223 (376)
T 3hsy_A 145 AEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL- 223 (376)
T ss_dssp HHHTCEEEEEECTTCC--------------------CEEEEESCHHHHHHHHHHHHHHTSSGGGCEEEECSSBTTSTTG-
T ss_pred hhcCCeEEEEEeccccccccchhHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHHcccCCCCcEEEEcCCCccccch-
Confidence 9999999987766532 2467899999999999999999999999999999999999999889999999753322221
Q ss_pred CCCCCCccccceeeEEEeeecCCchhHHHHHHHHHhhccC-CCCCCCCCCChhHHHHhhHHHHHHHHHHHHhhcCCcccc
Q 003958 267 SPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISRWRNLTDA-KTPNGYIGLNAYGFYAYDTVWLLARAINSFFKQGGNLSF 345 (784)
Q Consensus 267 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~YDAv~~~a~Al~~~~~~~~~~~~ 345 (784)
.+......+++++....++.+.+++|.++|+++++. +.+.+...++.+++.+|||++++++|++++..++.+...
T Consensus 224 ----~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~aa~~YDav~~la~Ai~~~~~~~~~~~~ 299 (376)
T 3hsy_A 224 ----LKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISR 299 (376)
T ss_dssp ----GGSCCTTCEEEEEESCCTTSHHHHHHHHHHTTSCTTTSTTCSCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCCCSC
T ss_pred ----HHhhcCCcCceEEEEecCCchHHHHHHHHHHhccccccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 112223345778888888899999999999998863 122222247889999999999999999999765433211
Q ss_pred ccCCccccccCCccc--ccccccCCchHHHHHHHhccccceeeeEEEecCCCCcCCcEEEEEeeccceEEEEEecCCCCC
Q 003958 346 SKDSRLSDIQGHLRL--DSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVIGTGYRRIGYWSNYSGL 423 (784)
Q Consensus 346 ~~~~~~~~~~g~~~~--~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~g~~~~~~~~I~~~~~~~~~~VG~w~~~~~l 423 (784)
.. .+..| .+...|.++..|.++|++++|+|++|+++||++|++....|+|+++.++++++||.|++..||
T Consensus 300 ~~--------~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g~ 371 (376)
T 3hsy_A 300 RG--------NAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKM 371 (376)
T ss_dssp CC--------CCCCTTCSSCCCCHHHHHHHHHHHHCCEEETTEEECBCTTSBBCSCEEEEEEEETTEEEEEEEEETTTEE
T ss_pred CC--------CCCccCCCCCCCcCCcHHHHHHHHhcCcCCCccceeECCCCCCccceEEEEEecCCCceEEEEEcCCCCc
Confidence 10 02245 445567789999999999999999999999999999899999999999999999999998876
Q ss_pred ce
Q 003958 424 SV 425 (784)
Q Consensus 424 ~~ 425 (784)
+.
T Consensus 372 ~~ 373 (376)
T 3hsy_A 372 VV 373 (376)
T ss_dssp EE
T ss_pred ee
Confidence 43
No 12
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=100.00 E-value=6.3e-48 Score=426.04 Aligned_cols=387 Identities=16% Similarity=0.191 Sum_probs=316.8
Q ss_pred ceEEEEEEeecC---CcchhhHHH-HHHHHHHHHhcCCCCCCCCEEEEEEecC-----CCCHHHHHHHHHHHHh-cCceE
Q 003958 30 SVVNIGALLSFS---TNVGKVAKL-AIKAAVDDVNSDPTTLGGTKLKLQMQDC-----NHSGFLALAEALHLME-GQTVA 99 (784)
Q Consensus 30 ~~i~IG~i~~~~---~~~g~~~~~-a~~~Ave~IN~~~~il~g~~l~~~~~D~-----~~~~~~a~~~~~~li~-~~v~a 99 (784)
++|+||+++|++ +..|..... |+++|+|+||+++++|||++|+++++|+ +|++..++..+.+++. ++|.+
T Consensus 1 g~i~IG~l~p~sg~~~~~g~~~~~~a~~~Av~~iN~~ggil~g~~l~~~~~D~~~~p~~c~~~~a~~~a~~~l~~~~v~a 80 (435)
T 1dp4_A 1 SDLTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAV 80 (435)
T ss_dssp CEEEEEEEECSSCCCSTTCHHHHHHHHHHHHHHHHTCTTSSTTCEEEEEEEECBCTTSSBCTTHHHHHHHHHHHHHCCSE
T ss_pred CceEEEEEccCcCCCCceeHHHHHHHHHHHHHHHHhCCCCCCCceEEEEEecCcCcccccchhhHHHHHHHHHHhcCceE
Confidence 589999999998 345666666 9999999999999999999999999999 5666688888877775 59999
Q ss_pred EEccCchhhHHHHHHhhhcCCccEEecccCCCCCCcC-CCCceEeecCChHHHHHHHHHHHHHcCCcEEEEE------EE
Q 003958 100 IIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSL-QFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAI------YV 172 (784)
Q Consensus 100 iiGp~~s~~~~~va~~~~~~~ip~Is~~a~~~~l~~~-~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii------~~ 172 (784)
||||.+|..+.+++++++.+++|+|+++++++.++++ .||++||+.|++..++.++++++++|+|+||++| ++
T Consensus 81 viG~~~S~~~~av~~~~~~~~ip~is~~~~~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~d~~~~ 160 (435)
T 1dp4_A 81 FLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGD 160 (435)
T ss_dssp EECCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEEEEECCSSS
T ss_pred EECCCChHHHHHHHHHHHhcCCcEEcccccccccCcccccCeEEEecCcHHHHHHHHHHHHHHCCCcEEEEEEEccCCCC
Confidence 9999999999999999999999999999999999984 6999999999999999999999999999999999 66
Q ss_pred cCCCcchhHHHHHHHHhc-cCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHHHHcCCCCCCe
Q 003958 173 DDDHGRNGIAALGDTLAA-KRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGY 251 (784)
Q Consensus 173 d~~~g~~~~~~l~~~l~~-~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~ 251 (784)
|++|| ...+.+.+.+.+ .|+||+..+.++ .+..|+..++++|++ ++|+|++++...++..++++++++|+.++++
T Consensus 161 ~~~~g-~~~~~~~~~~~~~~g~~v~~~~~~~--~~~~d~~~~l~~i~~-~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~ 236 (435)
T 1dp4_A 161 DRPCF-FIVEGLYMRVRERLNITVNHQEFVE--GDPDHYPKLLRAVRR-KGRVIYICSSPDAFRNLMLLALNAGLTGEDY 236 (435)
T ss_dssp CCHHH-HHHHHHHHHHHHHHCCEEEEEEECT--TCGGGHHHHHHHHHH-HCSEEEEESCHHHHHHHHHHHHHTTCCTTTC
T ss_pred cchHH-HHHHHHHHHHHhhcCeEEEEEEEec--CchhhHHHHHHHHHh-hCceEEEecChHHHHHHHHHHHHcCCCCCCE
Confidence 77788 566778888888 899999887664 467789999999998 9999999999999999999999999988779
Q ss_pred EEEecCccccccc---------cCC---CCCCCccccceeeEEEeeecCCchhHHHHHHHHHhhccC---CCCCCCCCCC
Q 003958 252 VWIATSWLSTALD---------TNS---PFPSDVMDDIQGVLTLRTYTPDSVLKRKFISRWRNLTDA---KTPNGYIGLN 316 (784)
Q Consensus 252 ~wi~~~~~~~~~~---------~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~---~~~~~~~~~~ 316 (784)
+||+++.+..... ... ...+...+..+|++++.+..|+++.+++|.++|+++++. |+..+. .++
T Consensus 237 ~~i~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~-~~~ 315 (435)
T 1dp4_A 237 VFFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKIITYKEPDNPEYLEFLKQLKLLADKKFNFTVEDG-LKN 315 (435)
T ss_dssp EEEEECTTCTTSCSSCTTSCBCTTCCSSSCHHHHHHHGGGEEEEEECCCCSHHHHHHHHHHHHHHHHHHCCCCCCS-GGG
T ss_pred EEEEEecccccccccccccccCCcccCCcchHHHHHHhheeEEEecCCCCChhHHHHHHHHHHHhcCCCCcccccc-hhh
Confidence 9999987654321 000 000112345788888888778888999999999877642 332221 256
Q ss_pred hhHHHHhhHHHHHHHHHHHHhhcCCccccccCCccccccCCcccccccccCCchHHHHHHHhccccceeeeEEEecCCCC
Q 003958 317 AYGFYAYDTVWLLARAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDL 396 (784)
Q Consensus 317 ~~~~~~YDAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~g~~ 396 (784)
.+++.+||||+++++||++++.++++ +.++++|.++|++++|+|++|+++||++|++
T Consensus 316 ~~~~~~ydav~~~a~Al~~~~~~~~~-----------------------~~~~~~l~~~l~~~~f~g~~G~v~fd~~g~~ 372 (435)
T 1dp4_A 316 IIPASFHDGLLLYVQAVTETLAQGGT-----------------------VTDGENITQRMWNRSFQGVTGYLKIDRNGDR 372 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCC-----------------------TTCHHHHHHTTTTEEEEETTEEEEECTTSBB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC-----------------------CCCHHHHHHHHhCceeeccceeEEECCCCCc
Confidence 68899999999999999998764321 1258899999999999999999999999997
Q ss_pred cCCcEEEEEe--eccceEEEEEecCCCC-CceecCccccCCCCCCCCCccccceeecCCCCCCCCCcee
Q 003958 397 INPAYEIINV--IGTGYRRIGYWSNYSG-LSVVRPETLYSKPPNRSSSNQRLYSVIWPGQTTQKPRGWV 462 (784)
Q Consensus 397 ~~~~~~I~~~--~~~~~~~VG~w~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~i~W~~~~~~~p~~~c 462 (784)
...|+|+++ .++.+++||.|++..+ +.+ .+...|.|+++..+...+.|
T Consensus 373 -~~~~~i~~~~~~~g~~~~vg~~~~~~~~l~~-----------------~~~~~i~W~~~~~P~~~p~C 423 (435)
T 1dp4_A 373 -DTDFSLWDMDPETGAFRVVLNYNGTSQELMA-----------------VSEHKLYWPLGYPPPDVPKC 423 (435)
T ss_dssp -CCCEEEEEECTTTCCEEEEEEECTTTCCEEE-----------------STTCCCCCTTSSCCCSSCTT
T ss_pred -cceeEEEEecCCCCcEEEEEEecCCCceEEE-----------------cCCceeeCCCCCCCCCCCCC
Confidence 478999999 5677999999987652 111 12357999988555555566
No 13
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=100.00 E-value=2e-47 Score=422.36 Aligned_cols=366 Identities=15% Similarity=0.223 Sum_probs=299.2
Q ss_pred CCceEEEEEEeecCC---cchhhHHHHHHHHHHHHhcCCC----CCCCCEEEEEEecCCCCHHHHHHHHHHHH----hcC
Q 003958 28 RPSVVNIGALLSFST---NVGKVAKLAIKAAVDDVNSDPT----TLGGTKLKLQMQDCNHSGFLALAEALHLM----EGQ 96 (784)
Q Consensus 28 ~~~~i~IG~i~~~~~---~~g~~~~~a~~~Ave~IN~~~~----il~g~~l~~~~~D~~~~~~~a~~~~~~li----~~~ 96 (784)
.+++|+||+++|++. ..|.....|+++|+|+||++++ +|||++|+++++|++|++. |+..+.+++ +++
T Consensus 6 ~~~~i~IG~~~p~sg~~~~~g~~~~~a~~~Av~eiN~~~~~~~~ll~g~~l~~~~~D~~~~~~-a~~~~~~~~~~~~~~~ 84 (441)
T 1jdp_A 6 PPQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNR-ALFSLVDRVAAARGAK 84 (441)
T ss_dssp CCCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTH-HHHHHHHHHHHTTTCC
T ss_pred CCCceEEEEEcCCCCCcccchhhhHHHHHHHHHHHHhCCCcccccCCCcEEEEEEecCCCchh-HHHHHHHHHHhhccCC
Confidence 457899999999983 3456778999999999999998 8899999999999999998 776665554 238
Q ss_pred ceEEEccCchhhHHHHHHhhhcCCccEEecccCCCCCCcC--CCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcC
Q 003958 97 TVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSL--QFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDD 174 (784)
Q Consensus 97 v~aiiGp~~s~~~~~va~~~~~~~ip~Is~~a~~~~l~~~--~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~ 174 (784)
|.+||||.+|..+.+++++++.+++|+|+++++++.++++ +||++||+.|++..++.++++++++|+|+||++|++|+
T Consensus 85 v~aiiG~~~S~~~~~v~~~~~~~~ip~is~~~~~~~ls~~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~v~ii~~d~ 164 (441)
T 1jdp_A 85 PDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDD 164 (441)
T ss_dssp CSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEECC
T ss_pred ceEEECCCchhhHHHHHHHHhhcCCcEEcCCCCchhhccccccCCceEEecCcHHHHHHHHHHHHHhcCCcEEEEEEEcC
Confidence 9999999999999999999999999999999999999984 79999999999999999999999999999999999999
Q ss_pred CCcch---hHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHHHHcCCCCCCe
Q 003958 175 DHGRN---GIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGY 251 (784)
Q Consensus 175 ~~g~~---~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~ 251 (784)
+||+. ..+.+++.+++.|+||+..+.++ .+..++..++++|+ +++|+|++++...++..++++++++|+.++.+
T Consensus 165 ~~g~~~~~~~~~~~~~~~~~g~~v~~~~~~~--~~~~d~~~~l~~i~-~~~~vii~~~~~~~~~~~~~~~~~~gl~~~~~ 241 (441)
T 1jdp_A 165 KLERNCYFTLEGVHEVFQEEGLHTSIYSFDE--TKDLDLEDIVRNIQ-ASERVVIMCASSDTIRSIMLVAHRHGMTSGDY 241 (441)
T ss_dssp SSSCHHHHHHHHHHHHHHHHTCEEEEEEECT--TSCCCHHHHHHHHH-HHCSEEEEESCHHHHHHHHHHHHHTTCTTTTC
T ss_pred CcccchHHHHHHHHHHHHhcCcEEEEEEecC--CcccCHHHHHHHhh-cCCcEEEEecCHHHHHHHHHHHHHcCCCCCCE
Confidence 99999 99999999999999999887665 23457899999999 99999999999999999999999999988889
Q ss_pred EEEecCcccc------ccccCCCCCCCccccceeeEEEeeecCCchhHHHHHHHHHhhccCC-CCCCCCCCChhHHHHhh
Q 003958 252 VWIATSWLST------ALDTNSPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISRWRNLTDAK-TPNGYIGLNAYGFYAYD 324 (784)
Q Consensus 252 ~wi~~~~~~~------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~YD 324 (784)
+||++++... .+...+...........++.++.++.+..+.+++|.++|+.+++.. .+ ....++.+++.+||
T Consensus 242 v~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~F~~~~~~~~~~~~~~-~~~~~~~~~~~~Yd 320 (441)
T 1jdp_A 242 AFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQGLN-MEDYVNMFVEGFHD 320 (441)
T ss_dssp EEEEECSSCCCSTTTCTTCCSSTTHHHHHHHGGGEEEEEECCCCCHHHHHHHHHHHHHHHTTTCC-CCSSCCHHHHHHHH
T ss_pred EEEEEeccccccccCCCCccCCcccHHHHHHHHhheEEeecCCCCchHHHHHHHHHHHHhhCCCC-ccchhhhHHHHHHH
Confidence 9998884221 1111000000001234455667777778899999999998874321 00 11124567899999
Q ss_pred HHHHHHHHHHHHhhcCCccccccCCccccccCCcccccccccCCchHHHHHHHhccccceeeeEEEecCCCCcCCcEEEE
Q 003958 325 TVWLLARAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEII 404 (784)
Q Consensus 325 Av~~~a~Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~g~~~~~~~~I~ 404 (784)
||+++|+||++++.++.. +.++++|.++|++++|+|++|++.||++|++ ...|+|+
T Consensus 321 Av~~~A~Al~~~~~~~~~-----------------------~~~~~~l~~~l~~~~f~g~~G~v~fd~~Gd~-~~~~~I~ 376 (441)
T 1jdp_A 321 AILLYVLALHEVLRAGYS-----------------------KKDGGKIIQQTWNRTFEGIAGQVSIDANGDR-YGDFSVI 376 (441)
T ss_dssp HHHHHHHHHHHHHHTTCC-----------------------TTCHHHHHHHHSSEEEEETTEEEEECTTSBB-CCEEEEE
T ss_pred HHHHHHHHHHHHHHhCCC-----------------------CCCHHHHHHHHhCCeeECCccceEECCCCCc-cccEEEE
Confidence 999999999998654210 2258899999999999999999999999997 5889999
Q ss_pred Eee---ccceEEEEEecCCCC
Q 003958 405 NVI---GTGYRRIGYWSNYSG 422 (784)
Q Consensus 405 ~~~---~~~~~~VG~w~~~~~ 422 (784)
+++ ++.+++||.|++..+
T Consensus 377 ~~~~~~~g~~~~VG~~~~~~~ 397 (441)
T 1jdp_A 377 AMTDVEAGTQEVIGDYFGKEG 397 (441)
T ss_dssp EEEETTTTEEEEEEEEETTTT
T ss_pred ecccCCCCceEEEEEEcCCCC
Confidence 996 356899999998753
No 14
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=100.00 E-value=3.6e-46 Score=404.05 Aligned_cols=369 Identities=21% Similarity=0.295 Sum_probs=309.8
Q ss_pred CCCceEEEEEEeecCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCC-CHHHHHHHHHHHHhcCceEEEccCc
Q 003958 27 GRPSVVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNH-SGFLALAEALHLMEGQTVAIIGPQD 105 (784)
Q Consensus 27 ~~~~~i~IG~i~~~~~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~-~~~~a~~~~~~li~~~v~aiiGp~~ 105 (784)
..+++|+||+++|+++. ....|+++|+|+||+++ +|++++.|+++ ++..+.++++++++++|.+||||.+
T Consensus 6 ~~~~~ikIG~~~~~sg~---~~~~a~~lAv~~iN~~g------~l~~~~~D~~~~d~~~a~~~~~~l~~~~V~aiiG~~~ 76 (384)
T 3saj_A 6 AMPNNIQIGGLFPNQQS---QEHAAFRFALSQLTEPP------KLLPQIDIVNISDSFEMTYRFCSQFSKGVYAIFGFYE 76 (384)
T ss_dssp CCCSEEEEEEEESCSSS---HHHHHHHHHHTTCCSSS------EEEEEEEECCTTCHHHHHHHHHHHHHTTCSCEEECCC
T ss_pred CCCcceeEEEEecCCCH---HHHHHHHHHHHHHhcCC------ccceeeEecccCchhhHHHHHHHHHhcCeEEEECCCC
Confidence 45789999999999864 78899999999999885 89999999887 9999999999999999999999999
Q ss_pred hhhHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCCCcchhHHHHH
Q 003958 106 AVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALG 185 (784)
Q Consensus 106 s~~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~ 185 (784)
|..+.+++++++.+++|+|++. ++.++ ..+|+||+.|+ ++.+++++++++||++|++|+ |++||....+.++
T Consensus 77 S~~~~a~~~~~~~~~iP~is~~--~~~~~--~~~~~~~~~p~---~~~a~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~ 148 (384)
T 3saj_A 77 RRTVNMLTSFCGALHVCFITPS--FPVDT--SNQFVLQLRPE---LQEALISIIDHYKWQTFVYIY-DADRGLSVLQRVL 148 (384)
T ss_dssp HHHHHHHHHHHHHHTCCEEECS--CCCSS--CCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCeEecc--ccCcC--ccCceEEeccc---HHHHHHHHHHHCCCcEEEEEE-eCchhHHHHHHHH
Confidence 9999999999999999999984 34443 35677888887 789999999999999999999 7799999999999
Q ss_pred HHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEEecCcccccccc
Q 003958 186 DTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDT 265 (784)
Q Consensus 186 ~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~ 265 (784)
+.+++.|+||+..+.++ .+..|+..++++|+++++|+|++++...++..++++++++|++.++|+||+++.+....+.
T Consensus 149 ~~~~~~g~~v~~~~~~~--~~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~~~ 226 (384)
T 3saj_A 149 DTAAEKNWQVTAVNILT--TTEEGYRMLFQDLEKKKERLVVVDCESERLNAILGQIVKLEKNGIGYHYILANLGFMDIDL 226 (384)
T ss_dssp HHHHHHTCEEEEEEGGG--CCHHHHHHTTTTCCSCSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEEESSSCGGGSCH
T ss_pred HHhhhcCceEEEEEecc--CCchhHHHHHHHHhccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCcEEEEECCCcccccH
Confidence 99999999999887554 4678999999999999999999999999999999999999999989999999854332221
Q ss_pred CCCCCCCccccceeeEEEeeecCCchhHHHHHHHHHhhccCC-CCCCCCCCChhHHHHhhHHHHHHHHHHHHhhcCCccc
Q 003958 266 NSPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISRWRNLTDAK-TPNGYIGLNAYGFYAYDTVWLLARAINSFFKQGGNLS 344 (784)
Q Consensus 266 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~YDAv~~~a~Al~~~~~~~~~~~ 344 (784)
........|++++.+..++++.+++|.++|+++++.. ++.....++.+++.+|||++++++|++++...+.+..
T Consensus 227 -----~~~~~~~~~v~~~~~~~~~~~~~~~F~~~~~~~~~~~~p~~~~~~~~~~aa~~YDav~~~a~Al~~~~~~~~~~~ 301 (384)
T 3saj_A 227 -----NKFKESGANVTGFQLVNYTDTIPARIMQQWRTSDSRDHTRVDWKRPKYTSALTYDGVKVMAEAFQSLRRQRIDIS 301 (384)
T ss_dssp -----HHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred -----HHhhCCCcceEEEEeecCCChHHHHHHHHHHhcCccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhcccee
Confidence 1122344568888888889999999999999988531 2112224567899999999999999999976543322
Q ss_pred cccCCccccccCCcccccc--cccCCchHHHHHHHhccccceeeeEEEecCCCCcCCcEEEEEeeccceEEEEEecCCCC
Q 003958 345 FSKDSRLSDIQGHLRLDSL--RIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVIGTGYRRIGYWSNYSG 422 (784)
Q Consensus 345 ~~~~~~~~~~~g~~~~~~~--~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~g~~~~~~~~I~~~~~~~~~~VG~w~~~~~ 422 (784)
... .+..|... ..|.++..|.++|++++|+|++|+++||++|++....|+|++++++++.+||.|++..|
T Consensus 302 ~~~--------~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~W~~~~g 373 (384)
T 3saj_A 302 RRG--------NAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWNEDDK 373 (384)
T ss_dssp CCC--------SCCCSCCBSCCCCTTHHHHHHHHHSCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEEEEETTTE
T ss_pred cCC--------CCCCCCCCCCCCcCCcHHHHHHHHhCcCcccceeeEeCCCCCcccceEEEEEeccCCcceeEEEcCCCC
Confidence 111 02345542 45678999999999999999999999999999989999999999999999999999887
Q ss_pred Cceec
Q 003958 423 LSVVR 427 (784)
Q Consensus 423 l~~~~ 427 (784)
+.+..
T Consensus 374 l~~~~ 378 (384)
T 3saj_A 374 FVPAA 378 (384)
T ss_dssp EEECC
T ss_pred ccccC
Confidence 76543
No 15
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=100.00 E-value=4.3e-46 Score=403.82 Aligned_cols=341 Identities=23% Similarity=0.348 Sum_probs=282.7
Q ss_pred CCceEEEEEEeecCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHH-HHhcCceEEEc----
Q 003958 28 RPSVVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALH-LMEGQTVAIIG---- 102 (784)
Q Consensus 28 ~~~~i~IG~i~~~~~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~-li~~~v~aiiG---- 102 (784)
.+++|+||+++|++ ....|+++|+|+||++++. .+++|+++..|+++|+.++..++++ |++++|.+|+|
T Consensus 2 ~~~~i~IG~i~~~s-----~~~~~~~lAv~~iN~~~~~-~~~~l~~~~~d~~~d~~~a~~~~~~~Li~~~V~aiiG~~~~ 75 (384)
T 3qek_A 2 DPKIVNIGAVLSTK-----KHEQIFREAVNQANKRHFT-RKIQLQATSVTHRPNAIQMALSVCEDLISSQVYAILVSHPP 75 (384)
T ss_dssp CCEEEEEEEEESSH-----HHHHHHHHHHHHHHHHSCC-SSEEEEEEEEECCSSHHHHHHHHHHHTGGGTEEEEEECC--
T ss_pred CceEEEEeEEeeCc-----hHHHHHHHHHHHHhccccC-CceEEEEEEecccCCHHHHHHHHHHHHHHcCceEEEEecCC
Confidence 46799999999998 6789999999999999865 4789999999999999999977666 88889999999
Q ss_pred -cCchhhHHHHHHhhhcCCccEEecccCCCCCCc-CCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCCCcchh
Q 003958 103 -PQDAVTSHVVSHVANELQVPLLSFSATDPTLSS-LQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNG 180 (784)
Q Consensus 103 -p~~s~~~~~va~~~~~~~ip~Is~~a~~~~l~~-~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~ 180 (784)
|.||..+.+++++++.+++|+|+++++++.+++ ..||++||+.|++..++.++++++++++|+||++|++|++||+..
T Consensus 76 ~~~~s~~~~a~~~~~~~~~iP~is~~~~~~~ls~~~~~~~~fr~~~~~~~~~~a~~~~~~~~gw~~v~ii~~d~~~G~~~ 155 (384)
T 3qek_A 76 APTDHLTPTPISYTAGFYRIPVIGLTTRMSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFNWNHVILIVSDDHEGRAA 155 (384)
T ss_dssp ------CCHHHHHHHHTTTCCEEESSCCCGGGGCSSSCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHH
T ss_pred CCccchhHHHHHHHHhcCCCCEEecccCchhccCcccCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCcccHHH
Confidence 567888899999999999999999999999998 579999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCcEE-----------EEe-------eccCC-CCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHH
Q 003958 181 IAALGDTLAAKRCRI-----------SFK-------APLSV-EATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVA 241 (784)
Q Consensus 181 ~~~l~~~l~~~gi~v-----------~~~-------~~~~~-~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a 241 (784)
.+.+++.+++.|+++ .+. +.++. ..+..|+..++++|+++++|+|++++...++..+++++
T Consensus 156 ~~~~~~~~~~~g~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a 235 (384)
T 3qek_A 156 QKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQFEPGTKNLTALLLEAKELEARVIILSASEDDATAVYKSA 235 (384)
T ss_dssp HHHHHHHHC--------------CCSCCCCCCCCEEEEEEEECTTCSCCHHHHHHHHTSSCCEEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCccccccccccceeeeccccCcccceecccCCchhhHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHH
Confidence 999999999998743 221 11110 13457899999999999999999999999999999999
Q ss_pred HHcCCCCCCeEEEecCccccccccCCCCCCCccccceeeEEEeeecCCchhHHHHHHHHHhhccCCCCCCCCCCChhHHH
Q 003958 242 QYLGMLGTGYVWIATSWLSTALDTNSPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFY 321 (784)
Q Consensus 242 ~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (784)
+++|+++++++||+++.+.... ......+|++++.++.++ ..++.
T Consensus 236 ~~~g~~~~~~~~i~~~~~~~~~--------~~~~~~~g~lg~~~~~~~---------------------------~~~~~ 280 (384)
T 3qek_A 236 AMLDMTGAGYVWLVGEREISGS--------ALRYAPDGIIGLQLINGK---------------------------NESAH 280 (384)
T ss_dssp HHTTCSSTTCEEECCSGGGSGG--------GGSSCCTTCEEEEETTTT---------------------------CHHHH
T ss_pred HHcCCccCCeEEEEeccccccc--------cccccCCccEEEEEcCCC---------------------------chhHH
Confidence 9999998889999999765321 233567899999876542 12778
Q ss_pred HhhHHHHHHHHHHHHhhcCCccccccCCccccccCCcccc-cccccCCchHHHHHHHhccc-cceeeeEEEecCCCCcCC
Q 003958 322 AYDTVWLLARAINSFFKQGGNLSFSKDSRLSDIQGHLRLD-SLRIFNGGNLLRDSILQANM-TGTAGPARFNSHGDLINP 399 (784)
Q Consensus 322 ~YDAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~l~~~l~~~~f-~g~tG~v~Fd~~g~~~~~ 399 (784)
+||||+++|+|+++++.+..... . +..|. ....|..+..|.+.+++++| +|++|++.||++|++...
T Consensus 281 ~YdAV~~~a~Al~~~~~~~~~~~-~----------~~~c~~~~~~~~~~~~l~~~~~~~~f~~G~~G~v~fd~~G~~~~~ 349 (384)
T 3qek_A 281 ISDAVAVVAQAIHELFEMENITD-P----------PRGCVGNTNIWKTGPLFKRVLMSSKYPDGVTGRIEFNEDGDRKFA 349 (384)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCCC-C----------CSCCTTCCCCCTTHHHHHHHHHTCCEEEETTEEECBCTTSCBCSC
T ss_pred HHHHHHHHHHHHHHHHhccCCCC-C----------CCccccCCCccccHHHHHHHHhcCCccCCCCcceEECCCCCCCcc
Confidence 99999999999999976542110 0 12343 34567788999999999998 999999999999998789
Q ss_pred cEEEEEeeccceEEEEEecCC
Q 003958 400 AYEIINVIGTGYRRIGYWSNY 420 (784)
Q Consensus 400 ~~~I~~~~~~~~~~VG~w~~~ 420 (784)
.|+|++++++++++||.|+..
T Consensus 350 ~~~I~~~~~~~~~~VG~w~~~ 370 (384)
T 3qek_A 350 QYSIMNLQNRKLVQVGIFNGS 370 (384)
T ss_dssp CEEEEEEETTEEEEEEEECSS
T ss_pred cEEEEEEcCCceEEEEEEeCC
Confidence 999999999999999999843
No 16
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=100.00 E-value=8e-40 Score=349.24 Aligned_cols=335 Identities=15% Similarity=0.258 Sum_probs=257.0
Q ss_pred CceEEEEEEeecCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEe-cCCCCHHHHHHHHHHHHhc-CceEEEcc-Cc
Q 003958 29 PSVVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQ-DCNHSGFLALAEALHLMEG-QTVAIIGP-QD 105 (784)
Q Consensus 29 ~~~i~IG~i~~~~~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~-D~~~~~~~a~~~~~~li~~-~v~aiiGp-~~ 105 (784)
+..+.||++|.-+.. +.+++-|++..|.-. +..++..++. .+.+||..+..++|+++.. +|.||||+ .+
T Consensus 2 ~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~dp~~~~~~~C~~l~~~~V~aiIgg~~s 73 (364)
T 3qel_B 2 PPSIGIAVILVGTSD-----EVAIKDAHEKDDFHH---LSVVPRVELVAMNETDPKSIITRICDLMSDRKIQGVVFADDT 73 (364)
T ss_dssp CCEEEEEEEEESSCC-----HHHHTC------------CCSEEEEEEEEECCCSHHHHHHHHHHHHHHSCEEEEEEEESS
T ss_pred CCceEEEEEEcccch-----hhhhccccCcccccc---CCccceEEEEEecCCCHHHHHHHHHHHHHhCCeEEEEecCCC
Confidence 457899999977643 788999999988554 2356666543 4677999999999999975 79898864 44
Q ss_pred hhhHHH--HHHhhhcCCccEEecccCCC-CCCc-CCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCCCcchhH
Q 003958 106 AVTSHV--VSHVANELQVPLLSFSATDP-TLSS-LQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGI 181 (784)
Q Consensus 106 s~~~~~--va~~~~~~~ip~Is~~a~~~-~l~~-~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~ 181 (784)
+..+.+ ++.+++.+++|+|+++++++ .|++ .+||+|||+.|++..|+.++++++++|||++|++||+|+ .| .
T Consensus 74 ~~~a~a~~v~~i~~~~~iP~IS~~at~~~~lsd~~~~p~f~Rt~psd~~q~~ai~~ll~~fgW~~V~iI~~d~-~g---~ 149 (364)
T 3qel_B 74 DQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYF-PG---Y 149 (364)
T ss_dssp CCTHHHHHHHHHHHHHTCCEEEEEGGGGSCCSSCCTTCCEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESC-TT---H
T ss_pred CchHHHHHHHHHHhccCCCEEEeecCCCCcCCCcccCceEEEcCCChHHHHHHHHHHHHHCCCeEEEEEEeCC-cc---H
Confidence 444555 89999999999999999998 8998 579999999999999999999999999999999999985 33 3
Q ss_pred HHHHHHHhcc--C--cEEEEeeccCCCCChhHHHHHH-HHhhcCCceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEEec
Q 003958 182 AALGDTLAAK--R--CRISFKAPLSVEATEDEITDLL-VKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIAT 256 (784)
Q Consensus 182 ~~l~~~l~~~--g--i~v~~~~~~~~~~~~~d~~~~l-~~l~~~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~ 256 (784)
+.+.+.+++. | +|+.+...++......++...+ ++|+++++++||+++..+.+..++++|.++|+++++|+||++
T Consensus 150 ~~~~~~l~~~~~~~~ici~~~~~i~~~~~~~~~~~~l~~~i~~~~a~ViIv~~~~~~~~~ll~~a~~~g~~~~~y~wI~t 229 (364)
T 3qel_B 150 QDFVNKIRSTIENSFVGWELEEVLLLDMSLDDGDSKIQNQLKKLQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVP 229 (364)
T ss_dssp HHHHHHHHHHHHTCSSCCEEEEEEEECTTSCSSSCHHHHHHTTCCCSEEEEESCHHHHHHHHHHHHTTTCSSTTCEEEEC
T ss_pred HHHHHHHHHHhhccccceEEEEEEccCCCcccHHHHHHHHHHccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEe
Confidence 4455544443 3 5877766554333445677788 689999999999999999999999999999999999999999
Q ss_pred CccccccccCCCCCCCccccceeeEEEeeecCCchhHHHHHHHHHhhccCCCCCCCCCCChhHHHHhhHHHHHHHHHHHH
Q 003958 257 SWLSTALDTNSPFPSDVMDDIQGVLTLRTYTPDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAINSF 336 (784)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~~a~Al~~~ 336 (784)
+.+....+.. ..+...|++++.+.. |+ ....+.+||||+++|+|++++
T Consensus 230 ~~~~~~~~~~------~~~~~~g~~~~~~~~------------W~--------------~~~~~~~yDaV~~~A~A~~~~ 277 (364)
T 3qel_B 230 SLVAGDTDTV------PSEFPTGLISVSYDE------------WD--------------YGLPARVRDGIAIITTAASDM 277 (364)
T ss_dssp HHHHCSTTCC------CTTSCTTCEECCBCT------------TT--------------SCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCcccc------cccCCCceEEEeecc------------ch--------------hhHHHHHHHHHHHHHHHHHHH
Confidence 8764333321 123457888876642 22 124678999999999999998
Q ss_pred hhcCCccccccCCccccccCCccccccc--ccCCchHHHHHHHhccccceeeeEEEecCCCCcCCcEEEEEee-ccceEE
Q 003958 337 FKQGGNLSFSKDSRLSDIQGHLRLDSLR--IFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVI-GTGYRR 413 (784)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~g~~~~~~~~I~~~~-~~~~~~ 413 (784)
.++....+.. +..|.... .|.+|..|.++|++++|+|+ ++.||++|+|.++.|+|++++ ++++++
T Consensus 278 ~~~~~~i~~~----------~~~C~~~~~~~~~~G~~l~~~l~~v~f~Gl--~i~F~~~G~~~~~~~~Iinl~~~~~~~~ 345 (364)
T 3qel_B 278 LSEHSFIPEP----------KSSCYNTHEKRIYQSNMLNRYLINVTFEGR--DLSFSEDGYQMHPKLVIILLNKERKWER 345 (364)
T ss_dssp HTTTSCCCCC----------CSCSTTTTTGGGGCCSTTHHHHTCCEETTE--ECCBCTTSSBSSCCEEEEEECTTSCEEE
T ss_pred HhccCCCCCC----------CCCCCCCCCCccCCHHHHHHHHhhceEeCc--eEEECCCCCcccceEEEEEEcCCCCcEE
Confidence 7653322211 33565543 57789999999999999998 899999999989999999998 678999
Q ss_pred EEEecC
Q 003958 414 IGYWSN 419 (784)
Q Consensus 414 VG~w~~ 419 (784)
||.|+.
T Consensus 346 VG~W~~ 351 (364)
T 3qel_B 346 VGKWKD 351 (364)
T ss_dssp EEEECS
T ss_pred EEEECC
Confidence 999984
No 17
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=100.00 E-value=2.3e-38 Score=343.64 Aligned_cols=352 Identities=16% Similarity=0.127 Sum_probs=297.2
Q ss_pred CceEEEEEEeecCC--cchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc-CceEEEccCc
Q 003958 29 PSVVNIGALLSFST--NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG-QTVAIIGPQD 105 (784)
Q Consensus 29 ~~~i~IG~i~~~~~--~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~-~v~aiiGp~~ 105 (784)
.++|+||+++|++. ..|.....|+++|+++||+++|+++|++++++++|+++++..+.+.+++|+.+ +|.+||||.+
T Consensus 3 ~~~i~IG~~~p~sg~~~~g~~~~~g~~~a~~~iN~~ggi~Gg~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~aiiG~~~ 82 (387)
T 3i45_A 3 LEAIRIGEINSYSQIPAFTLPYRNGWQLAVEQINAAGGLLGGRPLEVISRDDGGDPGKAVTAAQELLTRHGVHALAGTFL 82 (387)
T ss_dssp CCCEEEEEEECTTTCHHHHHHHHHHHHHHHHHHHHTTCBTTTBCEEEEEEECTTCHHHHHHHHHHHHHHHCCSEEEECCS
T ss_pred CCCEEEEEeecCCCchhhhHHHHHHHHHHHHHHHhcCCCCCCcceEEEEecCCCCHHHHHHHHHHHHHhcCCEEEECCcc
Confidence 56899999999985 34677899999999999999999855999999999999999999999999985 9999999999
Q ss_pred hhhHHHHHHhhhcCCccEEecccCCCCCCc-CCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCCCcchhHHHH
Q 003958 106 AVTSHVVSHVANELQVPLLSFSATDPTLSS-LQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAAL 184 (784)
Q Consensus 106 s~~~~~va~~~~~~~ip~Is~~a~~~~l~~-~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l 184 (784)
|..+.++++++...++|+|++.++++.+++ ..+|++||+.|++..++.++++++.+++|++|++|+.|++||+...+.+
T Consensus 83 s~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~~ 162 (387)
T 3i45_A 83 SHVGLAVSDFARQRKVLFMASEPLTDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPITRWATIAPNYEYGQSAVARF 162 (387)
T ss_dssp HHHHHHHHHHHHHHTCCEEECSCCCGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSSCCEEEEECCSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCceEEecCCCchhhhhccCCCCEEEeCCChHHHHHHHHHHHHHcCCCeEEEEeCCchHhHHHHHHH
Confidence 999999999999999999999988888875 5789999999999999999999999999999999999999999999999
Q ss_pred HHHHhcc--CcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEEecCccc--
Q 003958 185 GDTLAAK--RCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLS-- 260 (784)
Q Consensus 185 ~~~l~~~--gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~-- 260 (784)
++.+++. |++++....++ .+..|+..+++++++.++++|++.+...++..+++++++.|+... +++.+....
T Consensus 163 ~~~l~~~~~g~~vv~~~~~~--~~~~d~~~~~~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~--~~i~~~~~~~~ 238 (387)
T 3i45_A 163 KELLLAARPEVTFVAEQWPA--LYKLDAGPTVQALQQAEPEGLFNVLFGADLPKFVREGRVRGLFAG--RQVVSMLTGEP 238 (387)
T ss_dssp HHHHHHHCTTCEEEEEECCC--TTCCCHHHHHHHHHHTCCSEEEECCCTTHHHHHHHHHHHHTSSTT--CEEEEEEEESH
T ss_pred HHHHHHhCCCcEEEeeecCC--CCCcCHHHHHHHHHhCCCCEEEEcCccHHHHHHHHHHHHcCCCCC--CeEEeecCCCh
Confidence 9999998 89998877776 345689999999999999999999999999999999999998533 344333221
Q ss_pred cccccCCCCCCCccccceeeEEEee--ecCCchhHHHHHHHHHhhccCCCCCCCCCCChhHHHHhhHHHHHHHHHHHHhh
Q 003958 261 TALDTNSPFPSDVMDDIQGVLTLRT--YTPDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAINSFFK 338 (784)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~~a~Al~~~~~ 338 (784)
..... ......+|++.... ..++.+..++|.++|+++++ ..++.++..+|||++++++|++++..
T Consensus 239 ~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~-------~~p~~~~~~~Yda~~~~a~Al~~ag~ 305 (387)
T 3i45_A 239 EYLNP------LKDEAPEGWIVTGYPWYDIDTAPHRAFVEAYRARWK-------EDPFVGSLVGYNTLTAMAVAFEKAGG 305 (387)
T ss_dssp HHHGG------GGGGCCSSCEEEECCGGGCCCHHHHHHHHHHHHHHS-------SCCCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHH------hhhhccCceEEecccccCCCCHHHHHHHHHHHHHHC-------CCCCcHHHHHHHHHHHHHHHHHHhCC
Confidence 11111 11234567665432 23578899999999999987 34678899999999999999999611
Q ss_pred cCCccccccCCccccccCCcccccccccCCchHHHHHHHhccccceeeeEEEecCCCCcCCcEEEEEee-ccceEEEEEe
Q 003958 339 QGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVI-GTGYRRIGYW 417 (784)
Q Consensus 339 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~g~~~~~~~~I~~~~-~~~~~~VG~w 417 (784)
.++..|.++|++++|+|++|+++|++++++......|.+++ +++...++.|
T Consensus 306 ----------------------------~~~~~v~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~g~~~i~~w 357 (387)
T 3i45_A 306 ----------------------------TESETLVETLKDMAFSTPMGPLSFRASDHQSTMGAWVGRTALRDGKGVMVDW 357 (387)
T ss_dssp ----------------------------CCHHHHHHHTTTCEEEETTEEEEBCTTTCBBCCCEEEEEEEEETTEEEEEEE
T ss_pred ----------------------------CCHHHHHHHHhcCCCcCCCCCeEEcCCCCccccceeEEEEEeeCCceeEEee
Confidence 15889999999999999999999997554567778888876 5677899999
Q ss_pred cCCCCCce
Q 003958 418 SNYSGLSV 425 (784)
Q Consensus 418 ~~~~~l~~ 425 (784)
....+...
T Consensus 358 ~~~~~~~~ 365 (387)
T 3i45_A 358 RYVDGGSV 365 (387)
T ss_dssp EEECGGGG
T ss_pred EEeCchhc
Confidence 87665444
No 18
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=100.00 E-value=5.6e-39 Score=352.34 Aligned_cols=348 Identities=14% Similarity=0.075 Sum_probs=282.9
Q ss_pred CCCceEEEEEEeecCC---cchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCC-CCHHHHHHHHHHHHh-cCceEEE
Q 003958 27 GRPSVVNIGALLSFST---NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCN-HSGFLALAEALHLME-GQTVAII 101 (784)
Q Consensus 27 ~~~~~i~IG~i~~~~~---~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~-~~~~~a~~~~~~li~-~~v~aii 101 (784)
...++|+||+++|++. ..|.....|+++|+++||+++|++ |++|+++++|++ +++..+...+++|+. ++|.+||
T Consensus 10 ~~~~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~ggi~-G~~i~l~~~D~~~~~~~~a~~~a~~li~~~~v~aii 88 (419)
T 3h5l_A 10 QSSDPVVIGCPAPLTGIVAADGIEFQRGIQMAADEINAVGGIL-GRPIELVFADTQSKGVDVVIQSAQRLIDRDNASALI 88 (419)
T ss_dssp ---CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHTTTSBT-TBCEEEEEEECTTCCHHHHHHHHHHHHHTTCCSEEE
T ss_pred ccCCCEEEEEeecCCCcccccCHHHHHHHHHHHHHHHhcCCcC-ceEEEEEEccCCCCCHHHHHHHHHHHhhhcCCeEEE
Confidence 3567999999999984 457889999999999999999997 899999999987 699999999999998 6999999
Q ss_pred ccCchhhHHHHHHhhhcCCccEEecccCCCCCC-----c-CCCCceEeecCChHHHHHHHHHHHHHc--------CCcEE
Q 003958 102 GPQDAVTSHVVSHVANELQVPLLSFSATDPTLS-----S-LQFPYFVRTTQSDQYQMAAIAEIVDHY--------GWREV 167 (784)
Q Consensus 102 Gp~~s~~~~~va~~~~~~~ip~Is~~a~~~~l~-----~-~~~p~~~r~~ps~~~~~~ai~~~l~~~--------~w~~v 167 (784)
||.+|..+.+++++++.+++|+|++++ ++.++ + ..|+++||+.|++..++.+++++++++ +|++|
T Consensus 89 G~~~s~~~~a~~~~~~~~~ip~i~~~~-~~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 167 (419)
T 3h5l_A 89 AGYNLENGTALHDVAADAGVIAMHANT-VAVHDEMVKSDPDRYWGTFQYDPPETLYGGGFLKFLKDIEDNGEFSRPNNKI 167 (419)
T ss_dssp CSCCSSCSCHHHHHHHHHTCEEEECCC-CHHHHHHHHHCTTTCTTEEESSCCTHHHHHHHHHHHHHHHHTTSCCCSSSEE
T ss_pred ccccchhHHHhHHHHHHcCCeEEEcCc-chhhhhhhhcCcccCceEEEeCCchHHHHHHHHHHHHHHHhhccccCCCCEE
Confidence 999999999999999999999999643 33222 2 468999999999999999999999886 89999
Q ss_pred EEEEEcCCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEecc-CCcHHHHHHHHHHcCC
Q 003958 168 IAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH-YNRGPVVFHVAQYLGM 246 (784)
Q Consensus 168 ~ii~~d~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~-~~~~~~~~~~a~~~g~ 246 (784)
++|++|++||+...+.+++.+++.|++|+..+.++ .+..|+..++++|++.++|+|++.+. ++++..+++++++.|+
T Consensus 168 ail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~--~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~~g~ 245 (419)
T 3h5l_A 168 AIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVA--IPVSDWGPTLAKLRADPPAVIVVTHFYPQDQALFMNQFMTDPT 245 (419)
T ss_dssp EEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECC--SSCSCCHHHHHHHHHSCCSEEEECCCCHHHHHHHHHHHTTSCC
T ss_pred EEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCC--CCCccHHHHHHHHHhcCCCEEEEccccCchHHHHHHHHHHcCC
Confidence 99999999999999999999999999999888887 45678999999999999999999865 4679999999999998
Q ss_pred CCCCeEEEecCccccccccCCCCCCCccccceeeEEEeee-cCCchhHHHHHHHHHhhccCCCCCCCCCCC-hhHHHHhh
Q 003958 247 LGTGYVWIATSWLSTALDTNSPFPSDVMDDIQGVLTLRTY-TPDSVLKRKFISRWRNLTDAKTPNGYIGLN-AYGFYAYD 324 (784)
Q Consensus 247 ~~~~~~wi~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~YD 324 (784)
...|+++..+...... .......+|++..... .+..+..++|.++|+++++. .+. .++..+||
T Consensus 246 ---~~~~~~~~~~~~~~~~-----~~~g~~~~G~~~~~~~~~~~~~~~~~f~~~~~~~~g~-------~p~~~~a~~~Yd 310 (419)
T 3h5l_A 246 ---NSLVYLQYGASLAAFR-----DIAGDNSVGVTYATVLGTLQDEMGDAFAKAYKERYGD-------LSSTASGCQTYS 310 (419)
T ss_dssp ---SCEEEECSGGGSHHHH-----HHHGGGGTTCEEEESSCCCSSHHHHHHHHHHHHHHCT-------TSCHHHHHHHHH
T ss_pred ---CceEEecCCCCcHHHH-----HhhhhhcCceEEeecCCCCCCHHHHHHHHHHHHHhCC-------CCCcchhHHHHH
Confidence 3357776655432110 1122456776655443 35678899999999999873 233 58999999
Q ss_pred HHHHHHHHHHHHhhcCCccccccCCccccccCCcccccccccCCchHHHHHHHhccccceeeeEEEecCCCCc-------
Q 003958 325 TVWLLARAINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLI------- 397 (784)
Q Consensus 325 Av~~~a~Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~g~~~------- 397 (784)
|++++++|++++..... ...+.++..+.++|++++|+|++|.++||++|++.
T Consensus 311 a~~~~~~a~~~a~~~~~---------------------~g~~~~~~~l~~al~~~~~~g~~G~i~f~~~g~~~~~~~~~~ 369 (419)
T 3h5l_A 311 ALYAYSIAAALAGGPGA---------------------PYDDVQNKAVADRLRSLIFRGPVGTMRFHADTQSAWSYPTET 369 (419)
T ss_dssp HHHHHHHHHHHTTSCCC---------------------TTCHHHHHHHHHHHHHCEEEETTEEEEBCTTTCBBCEETTTC
T ss_pred HHHHHHHHHHHhcCCcc---------------------CCCccCHHHHHHHHHhCCcccCceEEEECCCCCccccccCcc
Confidence 99999999998632110 01122588999999999999999999999999842
Q ss_pred -----CCcEEEEEeeccce--EEE
Q 003958 398 -----NPAYEIINVIGTGY--RRI 414 (784)
Q Consensus 398 -----~~~~~I~~~~~~~~--~~V 414 (784)
...+.|+|++++++ +.|
T Consensus 370 ~~~~~~~~~~i~q~q~g~~~~~~V 393 (419)
T 3h5l_A 370 NDPSLGMPHIFSQIFDKAEDGVLI 393 (419)
T ss_dssp SCTTSSEECEEEECCCTTSCCEEE
T ss_pred CCccccCCceEEEeeCCceeeEEE
Confidence 22356788887777 544
No 19
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=100.00 E-value=1.1e-37 Score=335.71 Aligned_cols=340 Identities=16% Similarity=0.174 Sum_probs=286.2
Q ss_pred CceEEEEEEeecC---CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCC-CHHHHHHHHHHHHhc-CceEEEcc
Q 003958 29 PSVVNIGALLSFS---TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNH-SGFLALAEALHLMEG-QTVAIIGP 103 (784)
Q Consensus 29 ~~~i~IG~i~~~~---~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~-~~~~a~~~~~~li~~-~v~aiiGp 103 (784)
.++|+||+++|+| +..|.....|+++|++++| +++ .|++|+++++|+++ +|..++..+.+|+.+ +|.+||||
T Consensus 3 Ad~IkIG~~~plSG~~a~~G~~~~~g~~la~~~~n--ggi-~G~~ielv~~D~~~~~p~~a~~~a~~Li~~d~V~aiiG~ 79 (371)
T 4f06_A 3 ADTIKVGVIGTMSGPYALFGKNYKMGIDAWVAEHG--NKV-AGHTVEFVYRDEVSPNPAQSKALAQELIVKEKVQYLAGL 79 (371)
T ss_dssp -CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHC--SEE-TTEEEEEEEEECCSSCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCcEEEEEEeCCcCchHHhHHHHHHHHHHHHHHhC--CCC-CCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEec
Confidence 4689999999998 4557889999999999998 566 49999999999976 899999999999976 99999999
Q ss_pred CchhhHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCCCcchhHHH
Q 003958 104 QDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAA 183 (784)
Q Consensus 104 ~~s~~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~ 183 (784)
.+|..+.++++++..+++|+|+++++++.+++. .||+||+.|++..++.++++++++.+|+++++|++|++||+...+.
T Consensus 80 ~~S~~~~a~~~~~~~~~vp~i~~~a~~~~~~~~-~~~~fr~~~~~~~~~~~~~~~~~~~g~k~vaii~~~~~~g~~~~~~ 158 (371)
T 4f06_A 80 YFTPNAMAVAPLLQEAKVPMVVMNAATSSITEK-SPYIVRTSFTMFQNTVPAAKVAKQKGATKVAIAVSDYGPGIDAETA 158 (371)
T ss_dssp CSHHHHHHHGGGHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH
T ss_pred ccccchHHHHHHHHhhcCCccccccccchhccc-CCcceecccchhhhhhhhhhhhhhcCceEEEEEcCCcccchhHHHH
Confidence 999999999999999999999999988888764 4899999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEecc-CCcHHHHHHHHHHcCCCCCCeEEEecCccccc
Q 003958 184 LGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH-YNRGPVVFHVAQYLGMLGTGYVWIATSWLSTA 262 (784)
Q Consensus 184 l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~-~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~ 262 (784)
+++.+++.|++|+..+.++ .+..|++.++++|+++++|+|++... ......+++++++.|+......++..+.....
T Consensus 159 ~~~~~~~~g~~vv~~~~~~--~~~~d~~~~l~~i~~~~pd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 236 (371)
T 4f06_A 159 FKKTFEAEGGKVVEAVRMP--LSTTDFGPIMQRIKNSGADMIFTFLPAGPPTLGFVKAYIDNGLKAGGVKLMSTGDVVTE 236 (371)
T ss_dssp HHHHHHHTTCEEEEEEEEC--TTCCCCHHHHHHHHHHTCSEEEEECCTTHHHHHHHHHHHHTTTTTTTCEEEEEGGGGCG
T ss_pred HHHHHHhcCCceEEEEecC--cccccHHHHHHHHHhcCCCEEEEEeccCchhhHHHHHHHHhhhhccCcEEEEecccCCH
Confidence 9999999999999999888 46678999999999999999988765 46788899999999988766666665543222
Q ss_pred cccCCCCCCCccccceeeEEEeeecC--CchhHHHHHHHHHhhccCCCCCCCCCCChhHHHHhhHHHHHHHHHHHHhhcC
Q 003958 263 LDTNSPFPSDVMDDIQGVLTLRTYTP--DSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAINSFFKQG 340 (784)
Q Consensus 263 ~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~~a~Al~~~~~~~ 340 (784)
... ........|++...++.+ +++..++|.+.|+++++. ...++.++..+|||++++++|+++. .
T Consensus 237 ~~~-----~~~~~~~~g~~~~~~~~~~~~~p~~~~f~~~~~~~~~~-----~~~~~~~a~~~Yda~~~l~~Ai~~~---a 303 (371)
T 4f06_A 237 PDL-----PNIGEAGLGILSTYHYAVSHDSPENKAFLALLQKGGAK-----LDEVTMTSVAAYDGARLIYKMIEAT---S 303 (371)
T ss_dssp GGH-----HHHCGGGTTCEEEESCCTTCCSHHHHHHHHHHHHTTCC-----GGGCCHHHHHHHHHHHHHHHHHHHT---T
T ss_pred HHH-----HhcccccCceEEeeccccCCCChhHHHHHHHHHHhcCC-----CCCccchHHHHHHHHHHHHHHHHHh---c
Confidence 111 112345667777665544 578899999999998862 2346778999999999999999863 1
Q ss_pred CccccccCCccccccCCcccccccccCCchHHHHHHHhccccceeeeEEEecCCCCcCCcEEEEEee--ccce
Q 003958 341 GNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVI--GTGY 411 (784)
Q Consensus 341 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~g~~~~~~~~I~~~~--~~~~ 411 (784)
+ ..+++.+.++|++++|+|++|+++||++++.....+.|.+++ ++++
T Consensus 304 g------------------------~~d~~~v~~al~~~~~~~~~G~i~fd~~~~~~~~~~~i~~v~~~dGk~ 352 (371)
T 4f06_A 304 G------------------------KSDPDKAIAAVKGMKWVSPRGEVSIDPETRHITQNVYLREVEKVDGKL 352 (371)
T ss_dssp T------------------------SCCHHHHHHHHTTCEEEETTEEEEECTTTCBEEEEEEEEEEEEETTEE
T ss_pred C------------------------CCCHHHHHHHHhCCCeeCCcEEEEEcCCCCcccCCEEEEEEEecCCEE
Confidence 1 115889999999999999999999998776667778888887 4554
No 20
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=100.00 E-value=7.4e-38 Score=335.77 Aligned_cols=343 Identities=15% Similarity=0.162 Sum_probs=293.6
Q ss_pred ceEEEEEEeecCC---cchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCch
Q 003958 30 SVVNIGALLSFST---NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDA 106 (784)
Q Consensus 30 ~~i~IG~i~~~~~---~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s 106 (784)
++|+||+++|++. ..|.....|+++|+++||+++|+ +|+++++++.|+++++..+.+.+.+|++++|.+||||.++
T Consensus 1 ~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~iN~~ggi-~G~~~~l~~~d~~~~~~~~~~~~~~l~~~~v~~iig~~~s 79 (356)
T 3ipc_A 1 MDVVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGI-NGEQIKIVLGDDVSDPKQGISVANKFVADGVKFVVGHANS 79 (356)
T ss_dssp CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCB-TTBCEEEEEEECTTCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CeEEEEEeeCCCCcchhhCHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEecCCCCHHHHHHHHHHHHHCCCcEEEcCCCc
Confidence 4799999999984 45778899999999999999998 5999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHH-HHcCCcEEEEEEEcCCCcchhHHHHH
Q 003958 107 VTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV-DHYGWREVIAIYVDDDHGRNGIAALG 185 (784)
Q Consensus 107 ~~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l-~~~~w~~v~ii~~d~~~g~~~~~~l~ 185 (784)
..+.++++++...++|+|++.++++.+++..+|++||+.|++..++.++++++ +++||++|++|+.++++|+...+.++
T Consensus 80 ~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~ 159 (356)
T 3ipc_A 80 GVSIPASEVYAENGILEITPAATNPVFTERGLWNTFRTCGRDDQQGGIAGKYLADHFKDAKVAIIHDKTPYGQGLADETK 159 (356)
T ss_dssp HHHHHHHHHHHTTTCEEEESSCCCGGGGSSCCTTEEESSCCHHHHHHHHHHHHHHHCTTCCEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEecCCCCcHhhcCCCCcEEEecCChHHHHHHHHHHHHHhcCCCEEEEEeCCChHHHHHHHHHH
Confidence 99999999999999999999998888887778999999999999999999975 56799999999999999999999999
Q ss_pred HHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEEecCcccccccc
Q 003958 186 DTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDT 265 (784)
Q Consensus 186 ~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~ 265 (784)
+.+++.|++++....++ .+..++...++++++.++++|++++....+..+++++++.|+..+ |++++.+......
T Consensus 160 ~~l~~~g~~v~~~~~~~--~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~~~~~ 234 (356)
T 3ipc_A 160 KAANAAGVTEVMYEGVN--VGDKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQAADQGLKAK---LVSGDGIVSNELA 234 (356)
T ss_dssp HHHHHTTCCCSEEEECC--TTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHTCCCE---EEECGGGCSHHHH
T ss_pred HHHHHcCCEEEEEEeeC--CCCCCHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHCCCCCc---EEEeccccCHHHH
Confidence 99999999988777676 355678899999999999999999988899999999999998765 7776544321110
Q ss_pred CCCCCCCccccceeeEEEeeecC-CchhHHHHHHHHHhhccCCCCCCCCCCChhHHHHhhHHHHHHHHHHHHhhcCCccc
Q 003958 266 NSPFPSDVMDDIQGVLTLRTYTP-DSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAINSFFKQGGNLS 344 (784)
Q Consensus 266 ~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~~a~Al~~~~~~~~~~~ 344 (784)
.......+|++...++.+ ..+..++|.++|+++ + ..++.++..+|||++++++|++++..
T Consensus 235 -----~~~g~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~-~-------~~p~~~~~~~yda~~~~~~al~~ag~------ 295 (356)
T 3ipc_A 235 -----SIAGDAVEGTLNTFGPDPTLRPENKELVEKFKAA-G-------FNPEAYTLYSYAAMQAIAGAAKAAGS------ 295 (356)
T ss_dssp -----HHHGGGGTTCEEEESCCGGGCGGGHHHHHHHHHT-T-------CCCCTTHHHHHHHHHHHHHHHHHHTC------
T ss_pred -----HHhhHHhCCEEEEecCCCCCChhHHHHHHHHHHc-C-------CCcchhHHHHHHHHHHHHHHHHHhCC------
Confidence 112245677766655443 467899999999987 5 24567899999999999999999611
Q ss_pred cccCCccccccCCcccccccccCCchHHHHHHHhccccceeeeEEEecCCCCcCCcEEEEEeec---cceEEEEEecC
Q 003958 345 FSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVIG---TGYRRIGYWSN 419 (784)
Q Consensus 345 ~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~g~~~~~~~~I~~~~~---~~~~~VG~w~~ 419 (784)
.++..+.++|++.+|+|++|+++||++|++....+.|+++++ |+|+.+..|..
T Consensus 296 ----------------------~~~~~~~~~l~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~~~~G~~~~~~~~~~ 351 (356)
T 3ipc_A 296 ----------------------VEPEKVAEALKKGSFPTALGEISFDEKGDPKLPGYVMYEWKKGPDGKFTYIQQGSH 351 (356)
T ss_dssp ----------------------CCHHHHHHHHTTCCBCCTTSSBCBCTTSCBCCCCCEEEEEEECTTSSEEEEEC---
T ss_pred ----------------------CCHHHHHHHHHhCCCCCcceeeEECCCCCccCCCeEEEEEEECCCCcEEEEecccc
Confidence 158899999999999999999999999998778999999995 89999998865
No 21
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=2.2e-37 Score=333.47 Aligned_cols=343 Identities=17% Similarity=0.213 Sum_probs=291.9
Q ss_pred CCCceEEEEEEeecCC---cchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc-CceEEEc
Q 003958 27 GRPSVVNIGALLSFST---NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG-QTVAIIG 102 (784)
Q Consensus 27 ~~~~~i~IG~i~~~~~---~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~-~v~aiiG 102 (784)
..+.+++||+++|+|+ ..|.....|+++|++++|+ + .|+++++++.|+++++..+.+.+.+++.+ +|.+|||
T Consensus 12 ~~~~~~~iG~~~plsG~~a~~g~~~~~g~~~a~~~in~---i-~G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iiG 87 (366)
T 3td9_A 12 HMRKVVKIAVILPMTGGISAFGRMVWEGIQIAHEEKPT---V-LGEEVELVLLDTRSEKTEAANAAARAIDKEKVLAIIG 87 (366)
T ss_dssp ----CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHCCE---E-TTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred hhcceEEEEEEECCcCcchhcCHHHHHHHHHHHHHhhh---c-CCeEEEEEEecCCCCHHHHHHHHHHHhccCCeEEEEc
Confidence 4466999999999994 4578889999999999999 5 49999999999999999999999999988 5999999
Q ss_pred cCchhhHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHH-HHcCCcEEEEEEE-cCCCcchh
Q 003958 103 PQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV-DHYGWREVIAIYV-DDDHGRNG 180 (784)
Q Consensus 103 p~~s~~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l-~~~~w~~v~ii~~-d~~~g~~~ 180 (784)
|.++..+.++++++..+++|+|++.++++.+++ .+|++||+.|++..++.++++++ +++||++|++||. +++|+...
T Consensus 88 ~~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~ 166 (366)
T 3td9_A 88 EVASAHSLAIAPIAEENKVPMVTPASTNPLVTQ-GRKFVSRVCFIDPFQGAAMAVFAYKNLGAKRVVVFTDVEQDYSVGL 166 (366)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEESSCCCGGGTT-TCSSEEESSCCHHHHHHHHHHHHHHTSCCCEEEEEEETTCHHHHHH
T ss_pred cCCchhHHHHHHHHHhCCCeEEecCCCCccccC-CCCCEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEEEeCCCcHHHHH
Confidence 999999999999999999999999888877755 56999999999999999999998 5689999999987 77899999
Q ss_pred HHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEEecCccc
Q 003958 181 IAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLS 260 (784)
Q Consensus 181 ~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~ 260 (784)
.+.+++.+++.|++++... ++ .+..++..+++++++.++++|++.+....+..+++++++.|+..+ |++++.+.
T Consensus 167 ~~~~~~~~~~~G~~v~~~~-~~--~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~ 240 (366)
T 3td9_A 167 SNFFINKFTELGGQVKRVF-FR--SGDQDFSAQLSVAMSFNPDAIYITGYYPEIALISRQARQLGFTGY---ILAGDGAD 240 (366)
T ss_dssp HHHHHHHHHHTTCEEEEEE-EC--TTCCCCHHHHHHHHHTCCSEEEECSCHHHHHHHHHHHHHTTCCSE---EEECGGGC
T ss_pred HHHHHHHHHHCCCEEEEEE-eC--CCCccHHHHHHHHHhcCCCEEEEccchhHHHHHHHHHHHcCCCce---EEeeCCcC
Confidence 9999999999999998877 76 356678899999999999999998888899999999999998654 77665543
Q ss_pred cccccCCCCCCCccccceeeEEEeeecCC---chhHHHHHHHHHhhccCCCCCCCCCCChhHHHHhhHHHHHHHHHHHHh
Q 003958 261 TALDTNSPFPSDVMDDIQGVLTLRTYTPD---SVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAINSFF 337 (784)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~~a~Al~~~~ 337 (784)
..... .......+|++....+.+. .+..++|.++|+++++ ..++.++..+|||++++++|++++.
T Consensus 241 ~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g-------~~p~~~~~~~yda~~~~~~al~~ag 308 (366)
T 3td9_A 241 APELI-----EIGGEAVEGLLFTTHYHPKAASNPVAKKFVEVYKEKYG-------KEPAALNALGYDAYMVLLDAIERAG 308 (366)
T ss_dssp STHHH-----HHHGGGGTTCEEEESCCGGGCCSHHHHHHHHHHHHHHS-------SCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHH-----HHHhHHhCCeEEEEeeCCCCCCCHHHHHHHHHHHHHHC-------CCCchhHHHHHHHHHHHHHHHHHhC
Confidence 21100 1123466787777765543 6789999999999987 3467889999999999999999962
Q ss_pred hcCCccccccCCccccccCCcccccccccCCchHHHHHHHhcc-ccceeeeEEEecCCCCcCCcEEEEEeeccceEEEEE
Q 003958 338 KQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQAN-MTGTAGPARFNSHGDLINPAYEIINVIGTGYRRIGY 416 (784)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~~-f~g~tG~v~Fd~~g~~~~~~~~I~~~~~~~~~~VG~ 416 (784)
. .++..+.++|++++ |+|++|+++||++|++. ..+.|.++++++++.|+.
T Consensus 309 ~----------------------------~~~~~~~~~l~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~~~~g~~~~v~~ 359 (366)
T 3td9_A 309 S----------------------------FDREKIAEEIRKTRNFNGASGIINIDENGDAI-KSVVVNIVKNGSVDFEAV 359 (366)
T ss_dssp S----------------------------CCHHHHHHHHTTCCSEEETTEEECBCTTSCBC-CCEEEEEEETTEEEEEEE
T ss_pred C----------------------------CCHHHHHHHHHhCCCCcccceeeEECCCCCcc-CceEEEEEECCEEEEEEe
Confidence 1 15899999999998 99999999999999874 559999999999999999
Q ss_pred ecCCC
Q 003958 417 WSNYS 421 (784)
Q Consensus 417 w~~~~ 421 (784)
|++.+
T Consensus 360 ~~~~~ 364 (366)
T 3td9_A 360 INPDD 364 (366)
T ss_dssp ECGGG
T ss_pred cChhh
Confidence 98753
No 22
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=100.00 E-value=9.1e-37 Score=326.79 Aligned_cols=339 Identities=17% Similarity=0.215 Sum_probs=277.4
Q ss_pred CCCceEEEEEEeecC---CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc-CceEEEc
Q 003958 27 GRPSVVNIGALLSFS---TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG-QTVAIIG 102 (784)
Q Consensus 27 ~~~~~i~IG~i~~~~---~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~-~v~aiiG 102 (784)
..+++|+||+++|+| +..|.....|+++|+|+||+.||++ |++|+++++|++++|..+++.+.+|+.+ ++.+|+|
T Consensus 3 ~~~~tIkIG~~~plsG~~a~~G~~~~~g~~lAv~~iN~~GGi~-Gr~ielv~~D~~~~p~~a~~~a~~li~~~~v~~i~g 81 (353)
T 4gnr_A 3 VEEKTIKIGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGGID-GKQIEVVDKDNKSETAEAASVTTNLVTQSKVSAVVG 81 (353)
T ss_dssp ---CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBT-TBEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEC
T ss_pred CCCCeEEEEEEeCCcCchhHhHHHHHHHHHHHHHHHHhcCCCC-CeEEEEEEecCCCCHHHHHHHHHHHHhhCCceEEec
Confidence 356799999999998 4558889999999999999999996 9999999999999999999999999987 7899999
Q ss_pred cCchhhHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcC-CcEEEEEEEc-CCCcchh
Q 003958 103 PQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYG-WREVIAIYVD-DDHGRNG 180 (784)
Q Consensus 103 p~~s~~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~-w~~v~ii~~d-~~~g~~~ 180 (784)
|.+|..+.++++++..+++|+|++.++++.+++ .++|+||+.|++..++.++++++.+.+ ++++++++.+ ++||+..
T Consensus 82 ~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~ 160 (353)
T 4gnr_A 82 PATSGATAAAVANATKAGVPLISPSATQDGLTK-GQDYLFIGTFQDSFQGKIISNYVSEKLNAKKVVLYTDNASDYAKGI 160 (353)
T ss_dssp CCSHHHHHHHHHHHHHTTCCEEESSCCCTTTTT-TCTTEEECSCCHHHHHHHHHHHHHHTSCCSEEEEEEETTCHHHHHH
T ss_pred cccCcccceehhhhhccCcceEeeccccccccc-CCccccccCCCcHHHHHHHHHHHHHhcCCcEEEEEEcCchHHHHHH
Confidence 999999999999999999999999999888875 458999999999999999999987655 4555555554 4588777
Q ss_pred HHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEEecCccc
Q 003958 181 IAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLS 260 (784)
Q Consensus 181 ~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~ 260 (784)
.+.+.+ ..|.+++..+.++ .+..|++.+++++++.++|+|++.+...++..++++++++|+..+ |+...++.
T Consensus 161 ~~~~~~---~~g~~vv~~~~~~--~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~ 232 (353)
T 4gnr_A 161 AKSFRE---SYKGEIVADETFV--AGDTDFQAALTKMKGKDFDAIVVPGYYNEAGKIVNQARGMGIDKP---IVGGDGFN 232 (353)
T ss_dssp HHHHHH---HCCSEEEEEEEEC--TTCCCCHHHHHHHHTSCCSEEECCSCHHHHHHHHHHHHHTTCCSC---EEECGGGC
T ss_pred HHHHHH---HcCCEEEEEEeeC--CCCCCHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHcCCCCc---EEEecccc
Confidence 766654 3478888888887 456789999999999999999999999999999999999998765 56555433
Q ss_pred cccccCCCCCCCccccceeeEEEeeec---CCchhHHHHHHHHHhhccCCCCCCCCCCChhHHHHhhHHHHHHHHHHHHh
Q 003958 261 TALDTNSPFPSDVMDDIQGVLTLRTYT---PDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAINSFF 337 (784)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~~a~Al~~~~ 337 (784)
...... ....+..+|.+....+. +.++..++|.++|+++++ ..++.++..+|||++++++|++++.
T Consensus 233 ~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g-------~~p~~~a~~~Yda~~~la~Ai~~a~ 301 (353)
T 4gnr_A 233 GEEFVQ----QATAEKASNIYFISGFSTTVEVSAKAKAFLDAYRAKYN-------EEPSTFAALAYDSVHLVANAAKGAK 301 (353)
T ss_dssp SHHHHH----HHCTTTCCSEEEEESCCSSSSCCHHHHHHHHHHHHHHS-------SCCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred cchhhh----hhhhhhhcCccccccccCCCCCCHHHHHHHHHHHHHhC-------CCCChhHHHHHHHHHHHHHHHhcCC
Confidence 221100 01124456666665443 346788999999999997 4567899999999999999997630
Q ss_pred hcCCccccccCCccccccCCcccccccccCCchHHHHHHHhc-cccceeeeEEEecCCCCcCCcEEEEEeeccceEEEEE
Q 003958 338 KQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQA-NMTGTAGPARFNSHGDLINPAYEIINVIGTGYRRIGY 416 (784)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~-~f~g~tG~v~Fd~~g~~~~~~~~I~~~~~~~~~~VG~ 416 (784)
++..+.++|+++ +|+|++|+++||++|++ ...+.|+++++|+++.+..
T Consensus 302 ------------------------------~~~~v~~aL~~~~~~~g~~G~i~f~~~g~~-~~~~~i~~v~~Gk~~~~~~ 350 (353)
T 4gnr_A 302 ------------------------------NSGEIKDNLAXTKDFEGVTGQTSFDADHNT-VKTAYMMTMNNGKVEAAEV 350 (353)
T ss_dssp ------------------------------SHHHHHHHHHTCCCEEETTEEECCCTTSCC-CCCEEEEEEETTEEEEEEE
T ss_pred ------------------------------CHHHHHHHHHhcCCCccCceeEEECCCcCC-cCCeEEEEEECCEEEEEEE
Confidence 377899999988 49999999999999986 5667899999998877654
Q ss_pred e
Q 003958 417 W 417 (784)
Q Consensus 417 w 417 (784)
.
T Consensus 351 v 351 (353)
T 4gnr_A 351 V 351 (353)
T ss_dssp E
T ss_pred e
Confidence 3
No 23
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=100.00 E-value=8.5e-37 Score=327.78 Aligned_cols=344 Identities=16% Similarity=0.188 Sum_probs=292.6
Q ss_pred CceEEEEEEeecCC---cchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHH-hcCceEEEccC
Q 003958 29 PSVVNIGALLSFST---NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLM-EGQTVAIIGPQ 104 (784)
Q Consensus 29 ~~~i~IG~i~~~~~---~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li-~~~v~aiiGp~ 104 (784)
.++|+||+++|++. ..|.....|+++|++++|+++|++ |+++++++.|+++++..+.+.+.+++ +++|.+||||.
T Consensus 2 ~~~i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~~ggi~-G~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~ 80 (358)
T 3hut_A 2 SLALLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVG-GRPVDILYADSRDDADQARTIARAFVDDPRVVGVLGDF 80 (358)
T ss_dssp -CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBT-TBCEEEEEEECTTCHHHHHHHHHHHHHCTTEEEEEECS
T ss_pred CccEEEEEEeccCCchhhcCHHHHHHHHHHHHHHHhhCCCC-CeEEEEEEecCCCCHHHHHHHHHHHhccCCcEEEEcCC
Confidence 46899999999974 357788999999999999999997 99999999999999999999999999 67999999999
Q ss_pred chhhHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCCCcchhHHHH
Q 003958 105 DAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAAL 184 (784)
Q Consensus 105 ~s~~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l 184 (784)
++..+.++++++...++|+|++.++++.+++.. |++||+.|++..++.++++++.+.||++|++|+.++.+|+...+.+
T Consensus 81 ~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~ 159 (358)
T 3hut_A 81 SSTVSMAAGSIYGKEGMPQLSPTAAHPDYIKIS-PWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIGVTTDWGLSSAQAF 159 (358)
T ss_dssp SHHHHHHHHHHHHHHTCCEEESSCCCGGGTTSC-TTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHCCCcEEecCCCCcccccCC-CeEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCcHHHHHHHHHH
Confidence 999999999999999999999988888777654 9999999999999999999998889999999999999999999999
Q ss_pred HHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEEecCccccccc
Q 003958 185 GDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALD 264 (784)
Q Consensus 185 ~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~ 264 (784)
++.+++.|+++.....++ .+..++...++++++.++++|++.+....+..+++++++.|+..+ |++.+.+.....
T Consensus 160 ~~~l~~~g~~v~~~~~~~--~~~~~~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~p---~~~~~~~~~~~~ 234 (358)
T 3hut_A 160 RKAFELRGGAVVVNEEVP--PGNRRFDDVIDEIEDEAPQAIYLAMAYEDAAPFLRALRARGSALP---VYGSSALYSPKF 234 (358)
T ss_dssp HHHHHHTTCEEEEEEEEC--TTCCCCHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHHHTTCCCC---EEECGGGCSHHH
T ss_pred HHHHHHcCCEEEEEEecC--CCCccHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHcCCCCc---EEecCcccCHHH
Confidence 999999999998776666 345678889999998899999999888899999999999998765 777665432211
Q ss_pred cCCCCCCCccccceeeEEEeeecC--CchhHHHHHHHHHhhccCCCCCCCCCCChhHHHHhhHHHHHHHHHHHHhhcCCc
Q 003958 265 TNSPFPSDVMDDIQGVLTLRTYTP--DSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAINSFFKQGGN 342 (784)
Q Consensus 265 ~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~~a~Al~~~~~~~~~ 342 (784)
. .......+|++...++.+ ..+..++|.+.|+++++ ..++.++..+|||++++++|++++..
T Consensus 235 ~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~-------~~p~~~~~~~yda~~~~~~al~~ag~---- 298 (358)
T 3hut_A 235 I-----DLGGPAVEGVRLATAFVLGASDPVVVEFVSAYETLYG-------AIPTLFAAHGYDAVGIMLAAVGRAGP---- 298 (358)
T ss_dssp H-----HHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHS-------SCCCHHHHHHHHHHHHHHHHHHHHCT----
T ss_pred H-----HHhHHhhCCeEEEeccCCCCCCHHHHHHHHHHHHHHC-------CCCCHHHHHHHHHHHHHHHHHHHhCC----
Confidence 0 112245778877776554 47889999999999987 35678999999999999999999621
Q ss_pred cccccCCccccccCCcccccccccCCchH-HHHHHHhc-cccceeeeEEEecCCCCcCCcEEEEEeeccceEEEEEecC
Q 003958 343 LSFSKDSRLSDIQGHLRLDSLRIFNGGNL-LRDSILQA-NMTGTAGPARFNSHGDLINPAYEIINVIGTGYRRIGYWSN 419 (784)
Q Consensus 343 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-l~~~l~~~-~f~g~tG~v~Fd~~g~~~~~~~~I~~~~~~~~~~VG~w~~ 419 (784)
.++.. +.++|+++ +|+|++|+++||++|++....+.|.++++++|+.+..+.+
T Consensus 299 ------------------------~~~~~~~~~~l~~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~G~~~~~~~~~~ 353 (358)
T 3hut_A 299 ------------------------EVTRESLRDALAATDRYAGVTGITRFDPETRETTKILTRLVVREGDFRVIDREGH 353 (358)
T ss_dssp ------------------------TCCHHHHHHHHHTCCSEEETTEEEEECTTTCCEEECCEEEEEETTEEEEC-----
T ss_pred ------------------------CChHHHHHHHHHhcCCCcCCceeeEECCCCCcCCCceEEEEEECCEEEEeccccc
Confidence 14777 99999999 8999999999999998757788999999999988765543
No 24
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=100.00 E-value=7e-37 Score=326.84 Aligned_cols=339 Identities=15% Similarity=0.178 Sum_probs=285.7
Q ss_pred ceEEEEEEeecCCc---chhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCch
Q 003958 30 SVVNIGALLSFSTN---VGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDA 106 (784)
Q Consensus 30 ~~i~IG~i~~~~~~---~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s 106 (784)
++|+||+++|++.. .|.....|+++|+++||+++|+ +|+++++++.|+++++..+.+.+.++++++|.+||||.++
T Consensus 1 ~~i~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~ggi-~G~~l~l~~~d~~~~~~~~~~~~~~l~~~~v~~iig~~~s 79 (346)
T 1usg_A 1 DDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGI-KGDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCS 79 (346)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTB-TTBCEEEEEEECTTCHHHHHHHHHHHHHTTCCEEECCSSH
T ss_pred CcEEEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCCC-CCeEEEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEcCCCc
Confidence 37999999999743 4678899999999999999998 6999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHH-HHcCCcEEEEEEEcCCCcchhHHHHH
Q 003958 107 VTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV-DHYGWREVIAIYVDDDHGRNGIAALG 185 (784)
Q Consensus 107 ~~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l-~~~~w~~v~ii~~d~~~g~~~~~~l~ 185 (784)
..+.++++++...++|+|++.++++.++++.+|++||+.|++..++.++++++ +++||++|++|+.++.+++...+.++
T Consensus 80 ~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~i~~i~~~~~~~~~~~~~~~ 159 (346)
T 1usg_A 80 SSTQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQ 159 (346)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCCCGGGGSSCCSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEeeCCCChHHhcCCCCcEEeccCChHHHHHHHHHHHHHhcCCCeEEEEECCCchHHHHHHHHH
Confidence 88888899999999999999888877776558999999999999999999998 55799999999999889999999999
Q ss_pred HHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEEecCcccccccc
Q 003958 186 DTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDT 265 (784)
Q Consensus 186 ~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~ 265 (784)
+.+++.|+++.....++. +..++..+++++++.++++|++.+....+..+++++++.|+..+ |++++.+.... .
T Consensus 160 ~~l~~~g~~v~~~~~~~~--~~~d~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~~~-~ 233 (346)
T 1usg_A 160 DGLKAANANVVFFDGITA--GEKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVGLKTQ---FMGPEGVGNAS-L 233 (346)
T ss_dssp HHHHHTTCCEEEEEECCT--TCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCE---EEECGGGCCTT-H
T ss_pred HHHHHcCCEEEEEeccCC--CCcCHHHHHHHHHhcCCCEEEEcCcchHHHHHHHHHHHcCCCCe---EEecCCCCcHH-H
Confidence 999999999987666652 34567788999998899999998877788999999999998765 78766543211 0
Q ss_pred CCCCCCCccccceeeEEEeeec-CCchhHHHHHHHHHhhccCCCCCCCCCCChhHHHHhhHHHHHHHHHHHHhhcCCccc
Q 003958 266 NSPFPSDVMDDIQGVLTLRTYT-PDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAINSFFKQGGNLS 344 (784)
Q Consensus 266 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~~a~Al~~~~~~~~~~~ 344 (784)
. .......+|++...++. ++.+..++|.++|+++++ ..++.++..+|||++++++|++++..
T Consensus 234 ~----~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~-------~~~~~~~~~~yda~~~~~~al~~~g~------ 296 (346)
T 1usg_A 234 S----NIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADKK-------DPSGPYVWITYAAVQSLATALERTGS------ 296 (346)
T ss_dssp H----HHHGGGGTTCEEEECCCGGGSGGGHHHHHHHHHTTC-------CCCCHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred H----HHhhHhhCCeEEecCCCCCCCHHHHHHHHHHHHHhC-------CCCchhHHHHHHHHHHHHHHHHHhCC------
Confidence 0 11124567777766542 356788999999998875 24567899999999999999999611
Q ss_pred cccCCccccccCCcccccccccCCchHHHHHHHhccccceeeeEEEecCCCCcCCcEEEEEee-ccceEEE
Q 003958 345 FSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVI-GTGYRRI 414 (784)
Q Consensus 345 ~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~g~~~~~~~~I~~~~-~~~~~~V 414 (784)
.+++.|.++|++.+|+|++|+++||++|++....|.|++++ +++++.|
T Consensus 297 ----------------------~~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~~~~~~i~~~~~~G~~~~~ 345 (346)
T 1usg_A 297 ----------------------DEPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGSSTKA 345 (346)
T ss_dssp ----------------------CCHHHHHHHHHHHCEEETTEEECBCTTSSBSSCCCEEEEECTTSCEEEC
T ss_pred ----------------------CCHHHHHHHHHhCCCccceeeeEECCCCCccCCceEEEEEecCCEEEec
Confidence 14889999999999999999999999999866789999999 8887765
No 25
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=100.00 E-value=2.4e-36 Score=326.42 Aligned_cols=334 Identities=15% Similarity=0.168 Sum_probs=286.4
Q ss_pred CceEEEEEEeecCC---cc-hhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHh-cCceEEEcc
Q 003958 29 PSVVNIGALLSFST---NV-GKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLME-GQTVAIIGP 103 (784)
Q Consensus 29 ~~~i~IG~i~~~~~---~~-g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~-~~v~aiiGp 103 (784)
.++|+||+++|++. .. |.....|+++|++++ ++++ .|++++++++|+++++..+.+.+.+|+. ++|.+||||
T Consensus 2 ~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~A~~~~--~ggi-~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~ 78 (375)
T 3i09_A 2 ADSVKIGFITDMSGLYADIDGQGGLEAIKMAVADF--GGKV-NGKPIEVVYADHQNKADIAASKAREWMDRGGLDLLVGG 78 (375)
T ss_dssp CSSEEEEEEECSSSTTTTTSHHHHHHHHHHHHHHH--TSEE-TTEEEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEEEC
T ss_pred CCCeEEEEEeCCCcccccccCHHHHHHHHHHHHHh--CCCC-CCeEEEEEEecCCCCHHHHHHHHHHHHhhCCCEEEECC
Confidence 46899999999983 33 778899999999999 4666 4899999999999999999999999998 799999999
Q ss_pred CchhhHHHHHHhhhcCCccEEecccCCCCCCc-CCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCCCcchhHH
Q 003958 104 QDAVTSHVVSHVANELQVPLLSFSATDPTLSS-LQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIA 182 (784)
Q Consensus 104 ~~s~~~~~va~~~~~~~ip~Is~~a~~~~l~~-~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~ 182 (784)
.+|..+.++++++..+++|+|+++++++.+++ ..+|++||+.|++..++.++++++.+++|++|++|+.|+++|+...+
T Consensus 79 ~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~ 158 (375)
T 3i09_A 79 TNSATALSMNQVAAEKKKVYINIGAGADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQGGKTWFFLTADYAFGKALEK 158 (375)
T ss_dssp SCHHHHHHHHHHHHHHTCEEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCceEEEeCCCchhhhcccCCCcEEEeeCChHHHHHHHHHHHHHcCCceEEEEecccHHHHHHHH
Confidence 99999999999999999999999888888887 46899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEEecCccccc
Q 003958 183 ALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTA 262 (784)
Q Consensus 183 ~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~ 262 (784)
.+++.+++.|++|+....++ .+..|+..+++++++.++++|++.+...++..++++++++|+..+. .+++.+.+...
T Consensus 159 ~~~~~~~~~G~~v~~~~~~~--~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~-~i~g~~~~~~~ 235 (375)
T 3i09_A 159 NTADVVKANGGKVLGEVRHP--LSASDFSSFLLQAQSSKAQILGLANAGGDTVNAIKAAKEFGITKTM-KLAALLMFIND 235 (375)
T ss_dssp HHHHHHHHTTCEEEEEEEEC--TTCSCCHHHHHHHHHTCCSEEEEECCHHHHHHHHHHHHHTTGGGTC-EEEESSCCHHH
T ss_pred HHHHHHHHcCCEEeeeeeCC--CCCccHHHHHHHHHhCCCCEEEEecCchhHHHHHHHHHHcCCCcCc-eEEecccchhh
Confidence 99999999999998887777 3456889999999999999999998888999999999999998766 45554444322
Q ss_pred cccCCCCCCCccccceeeEEEeeecCC-chhHHHHHHHHHhhccCCCCCCCCCCChhHHHHhhHHHHHHHHHHHHhhcCC
Q 003958 263 LDTNSPFPSDVMDDIQGVLTLRTYTPD-SVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAINSFFKQGG 341 (784)
Q Consensus 263 ~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~~a~Al~~~~~~~~ 341 (784)
... ...+..+|++...++.++ .+..++|.++|+++++ ..++.++..+|||++++++|++++..
T Consensus 236 ~~~------~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g-------~~p~~~a~~~Yda~~~~~~Al~~ag~--- 299 (375)
T 3i09_A 236 VHA------LGLETTQGLVLTDSWYWNRDQASRQWAQRYFAKMK-------KMPSSLQAADYSSVTTYLKAVQAAGS--- 299 (375)
T ss_dssp HHH------HCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHS-------SCCCHHHHHHHHHHHHHHHHHHHHTS---
T ss_pred Hhh------hChhhhCCeeeeeeecCCCCHHHHHHHHHHHHHHC-------CCCcHHHHHHHHHHHHHHHHHHHhCC---
Confidence 111 112456777776655443 6789999999999987 35678899999999999999999621
Q ss_pred ccccccCCccccccCCcccccccccCCchHHHHHHHhccccceeeeEEEecCCCCcCCcEEEEEeeccc
Q 003958 342 NLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVIGTG 410 (784)
Q Consensus 342 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~g~~~~~~~~I~~~~~~~ 410 (784)
.++..|.++|++++|+|++|.++|+++|++ ...+.|.++++++
T Consensus 300 -------------------------~~~~~l~~aL~~~~~~~~~G~~~f~~~g~~-~~~~~i~~v~~~~ 342 (375)
T 3i09_A 300 -------------------------TDSDKVMAQLKKMKIDDFYAKGYIRTDGSM-IHDMYLMEVKKPS 342 (375)
T ss_dssp -------------------------CCHHHHHHHHTTSCEESSSCEEEECTTSBE-ECCEEEEEECCGG
T ss_pred -------------------------CCHHHHHHHHhCCCccCCCCceEECCCCCe-eeeeEEEEEeccc
Confidence 158899999999999999999999999986 4567898987643
No 26
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=100.00 E-value=3.5e-36 Score=325.23 Aligned_cols=346 Identities=12% Similarity=0.165 Sum_probs=294.0
Q ss_pred CCCceEEEEEEeecCC---cchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc-CceEEEc
Q 003958 27 GRPSVVNIGALLSFST---NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG-QTVAIIG 102 (784)
Q Consensus 27 ~~~~~i~IG~i~~~~~---~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~-~v~aiiG 102 (784)
+..++|+||+++|++. ..|.....|+++|++++| +++ +|+++++++.|+++++..+.+.+.+++++ +|.+|||
T Consensus 12 a~~~~i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~n--g~~-~g~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig 88 (375)
T 4evq_A 12 AQAGALKVGLLLPYSGTYAPLGEAITRGLELYVQSQG--GKL-GGRSISFVKVDDESAPPKATELTTKLIQSEKADVLIG 88 (375)
T ss_dssp ---CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHTT--TEE-TTEEEEEEEEECTTCHHHHHHHHHCCCCCSCCSEEEE
T ss_pred hhCCCeEEEEEeCCCCcchhcCHHHHHHHHHHHHHhC--CCc-CCEEEEEEEecCCCCHHHHHHHHHHHHhcCCceEEEc
Confidence 3457999999999974 457788999999999998 444 79999999999999999999999999986 9999999
Q ss_pred cCchhhHHHHHHhhhcCCccEEecccCCCCCCcC-CCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCCCcchhH
Q 003958 103 PQDAVTSHVVSHVANELQVPLLSFSATDPTLSSL-QFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGI 181 (784)
Q Consensus 103 p~~s~~~~~va~~~~~~~ip~Is~~a~~~~l~~~-~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~ 181 (784)
|.++..+.++++++..+++|+|++.++++.+++. .+|++||+.|++..++.++++++.++||++|++|+.++.+|+...
T Consensus 89 ~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~ 168 (375)
T 4evq_A 89 TVHSGVAMAMVKIAREDGIPTIVPNAGADIITRAMCAPNVFRTSFANGQIGRATGDAMIKAGLKKAVTVTWKYAAGEEMV 168 (375)
T ss_dssp CSSHHHHHHHHHHHHHHCCCEEESSCCCGGGGTTTCCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHH
T ss_pred CCccHHHHHHHHHHHHcCceEEecCCCChhhcccCCCCCEEEeeCChHhHHHHHHHHHHHcCCcEEEEEecCchHHHHHH
Confidence 9999999999999999999999999888888774 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEEecCcccc
Q 003958 182 AALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLST 261 (784)
Q Consensus 182 ~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~ 261 (784)
+.+++.+++.|++++....++ .+..++...++++++.++++|++.+....+..+++++++.|+..+ |+++++ ..
T Consensus 169 ~~~~~~l~~~G~~v~~~~~~~--~~~~d~~~~~~~l~~~~~dai~~~~~~~~a~~~~~~~~~~g~~vp---~~~~~~-~~ 242 (375)
T 4evq_A 169 SGFKKSFTAGKGEVVKDITIA--FPDVEFQSALAEIASLKPDCVYAFFSGGGALKFIKDYAAANLGIP---LWGPGF-LT 242 (375)
T ss_dssp HHHHHHHHHTTCEEEEEEEEC--TTCCCCHHHHHHHHHHCCSEEEEECCTHHHHHHHHHHHHTTCCCC---EEEEGG-GT
T ss_pred HHHHHHHHHcCCeEEEEEecC--CCCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCce---EEecCc-CC
Confidence 999999999999998777676 345678889999998899999998888999999999999998755 666543 21
Q ss_pred ccccCCCCCCCccccceeeEEEeeecC--CchhHHHHHHHHHhhccCCCCCCCCCCChhHHHHhhHHHHHHHHHHHHhhc
Q 003958 262 ALDTNSPFPSDVMDDIQGVLTLRTYTP--DSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAINSFFKQ 339 (784)
Q Consensus 262 ~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~~a~Al~~~~~~ 339 (784)
. +.. .......+|++...++.+ +.+..++|.++|+++++ ..++.++..+|||++++++|++++..
T Consensus 243 ~-~~~----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~-------~~p~~~~~~~yda~~~~~~al~~~g~- 309 (375)
T 4evq_A 243 D-GVE----AAAGPAGDGIKTVLHYVSDLDNAENQAFVKSFEAAYK-------IPPDVFAVQGWDAGQLLDAGVKAVGG- 309 (375)
T ss_dssp T-TTH----HHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHS-------SCCCHHHHHHHHHHHHHHHHHHHTTT-
T ss_pred H-HHH----HhhhhhcCCeEEeeccCCCCCCHHHHHHHHHHHHHHC-------CCCcHHHHHHHHHHHHHHHHHHHhCC-
Confidence 1 110 112356778887766554 46889999999999987 35678899999999999999998511
Q ss_pred CCccccccCCccccccCCcccccccccCCchHHHHHHHhccccceeeeEEEecCCCCcCCcEEEEEeeccceEEEEEecC
Q 003958 340 GGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVIGTGYRRIGYWSN 419 (784)
Q Consensus 340 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~g~~~~~~~~I~~~~~~~~~~VG~w~~ 419 (784)
.+.++..|.++|++++|+|++|+++||++|++ ...+.|.++++++++.|+.+-.
T Consensus 310 -------------------------~~~~~~~l~~~l~~~~~~g~~G~i~f~~~g~~-~~~~~i~~~~~g~~~~v~~~~~ 363 (375)
T 4evq_A 310 -------------------------DVAKRKELNAAMAAASFASPRGPFKLSAAHNP-VQNFYLRELKGGKSVNLGLAAP 363 (375)
T ss_dssp -------------------------CTTCHHHHHHHHHTCEEEETTEEEEBCTTSCB-CCCEEEEEEETTEEEEEEEEEC
T ss_pred -------------------------CCCCHHHHHHHHhcCCcccCCcceeECCCCCc-cccEEEEEEECCCcEEeeehhh
Confidence 11258899999999999999999999999986 5689999999999999998854
Q ss_pred C
Q 003958 420 Y 420 (784)
Q Consensus 420 ~ 420 (784)
.
T Consensus 364 ~ 364 (375)
T 4evq_A 364 A 364 (375)
T ss_dssp S
T ss_pred c
Confidence 3
No 27
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=100.00 E-value=1e-36 Score=331.42 Aligned_cols=351 Identities=11% Similarity=0.017 Sum_probs=293.8
Q ss_pred CCceEEEEEEeecCC---cchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc-CceEEEcc
Q 003958 28 RPSVVNIGALLSFST---NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG-QTVAIIGP 103 (784)
Q Consensus 28 ~~~~i~IG~i~~~~~---~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~-~v~aiiGp 103 (784)
..++|+||+++|++. ..|.....|+++|+++||+++|++ |+++++++.|+++++..+.+.+.+|+.+ +|.+|||
T Consensus 4 a~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~-G~~i~l~~~D~~~~~~~~~~~~~~li~~~~V~~iig- 81 (392)
T 3lkb_A 4 GQQQVTLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKLVP-GVVFNCVVRDDQYNNANTQRFFEEAVDRFKIPVFLS- 81 (392)
T ss_dssp CCEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHTSST-TEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSCEEE-
T ss_pred cCCceEEEEEecccCchhhcChhHHHHHHHHHHHHHhcCCcC-CeEeEEEEecCCCCHHHHHHHHHHHHhhcCcEEEEe-
Confidence 357999999999983 457788999999999999999996 8999999999999999999999999997 9999999
Q ss_pred CchhhHHHHHHhhhcCCccEEecccCCCCCCc-CCCCceEeecCChHHHHHHHHHHHHH-cCCcEEEEEEEcCCCcchhH
Q 003958 104 QDAVTSHVVSHVANELQVPLLSFSATDPTLSS-LQFPYFVRTTQSDQYQMAAIAEIVDH-YGWREVIAIYVDDDHGRNGI 181 (784)
Q Consensus 104 ~~s~~~~~va~~~~~~~ip~Is~~a~~~~l~~-~~~p~~~r~~ps~~~~~~ai~~~l~~-~~w~~v~ii~~d~~~g~~~~ 181 (784)
.+|..+.++++++...++|+|++.+++ .+.+ ..+|++||+.|++..++.++++++.+ ++|++|++|+.+++||+...
T Consensus 82 ~~s~~~~~~~~~~~~~~iP~i~~~~~~-~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~g~~~~ 160 (392)
T 3lkb_A 82 YATGANLQLKPLIQELRIPTIPASMHI-ELIDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGAKVALVVHPSPFGRAPV 160 (392)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEESCCCG-GGGSSSSCTTBCEEECCHHHHHHHHHHHHHHHCTTCEEEEEECSSHHHHTTH
T ss_pred CCcHHHHHHHHHHHhCCceEEecccCh-hhccCCCCCceEecCCChHHHHHHHHHHHHHhCCCCEEEEEEeCCchhhhHH
Confidence 688888899999999999999976544 3554 56899999999999999999999876 69999999999999999999
Q ss_pred HHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEEecCcccc
Q 003958 182 AALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLST 261 (784)
Q Consensus 182 ~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~ 261 (784)
+.+++.+++.|++++....++ .+..|+..+++++++.++++|++.+....+..++++++++|+..+ |++++++..
T Consensus 161 ~~~~~~l~~~G~~v~~~~~~~--~~~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~ 235 (392)
T 3lkb_A 161 EDARKAARELGLQIVDVQEVG--SGNLDNTALLKRFEQAGVEYVVHQNVAGPVANILKDAKRLGLKMR---HLGAHYTGG 235 (392)
T ss_dssp HHHHHHHHHHTCEEEEEEECC--TTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCE---EEECGGGCS
T ss_pred HHHHHHHHHcCCeEEEEEeeC--CCCcCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCce---EEEecCccc
Confidence 999999999999998877776 355678899999999999999999999999999999999998654 666654432
Q ss_pred ccccCCCCCCCccccceeeEEEeeecC--CchhHHHHHHHHHhhccCCCCCCCCCCC----hhHHHHhhHHHHHHHHHHH
Q 003958 262 ALDTNSPFPSDVMDDIQGVLTLRTYTP--DSVLKRKFISRWRNLTDAKTPNGYIGLN----AYGFYAYDTVWLLARAINS 335 (784)
Q Consensus 262 ~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~----~~~~~~YDAv~~~a~Al~~ 335 (784)
.... .......+|++...++.+ ..+..++|.++|+++++. .++ .++..+|||++++++|+++
T Consensus 236 ~~~~-----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-------~p~~~~~~~~~~~yda~~~~~~al~~ 303 (392)
T 3lkb_A 236 PDLI-----ALAGDAAEGFLWATSFYMAHEDTPGIRLQKEIGRKYGR-------PENFIESVNYTNGMLAAAIAVEAIRR 303 (392)
T ss_dssp HHHH-----HHHGGGGTTCEEEESBCCTTSCCHHHHHHHHHHHHTTC-------CHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HhhhhhhcCeEEEEeecCCCCCchhHHHHHHHHHHhCC-------CcccccchhHHHHHHHHHHHHHHHHH
Confidence 1110 112245778777765533 245678999999999862 222 3478999999999999999
Q ss_pred HhhcCCccccccCCccccccCCcccccccccCCchHHHHHHHhcc----cc-------ceeeeEEEecCCCCcCCcEEEE
Q 003958 336 FFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQAN----MT-------GTAGPARFNSHGDLINPAYEII 404 (784)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~~----f~-------g~tG~v~Fd~~g~~~~~~~~I~ 404 (784)
+...++ ..++..+.++|++++ |+ |++|+++|+++|++....+.|.
T Consensus 304 ag~~~~------------------------~~~~~~v~~aL~~~~~~~~~~~~~~~~~G~~G~i~f~~~~~~~~~~~~i~ 359 (392)
T 3lkb_A 304 AQERFK------------------------RITNETVYQAIVGMNGPNAFKPGFAVSTKQGVEIDFTKSEHTGAEGLRIL 359 (392)
T ss_dssp HHHHHS------------------------SCCHHHHHHHHHTCCGGGCBCCSSBCCCSSSCSBCCCSSCCEEECCBEEE
T ss_pred hhccCC------------------------CCCHHHHHHHHHhcCCCcCcccccccccccceeeEeCCCCcCCcccEEEE
Confidence 743211 125899999999997 98 9999999999888767789999
Q ss_pred EeeccceEEEEEecCCCC
Q 003958 405 NVIGTGYRRIGYWSNYSG 422 (784)
Q Consensus 405 ~~~~~~~~~VG~w~~~~~ 422 (784)
++++++++.|+.|....+
T Consensus 360 ~~~~g~~~~v~~w~~~~~ 377 (392)
T 3lkb_A 360 EAKGGRFVPVTEPFTSAL 377 (392)
T ss_dssp EEETTEEEECSCCBCCHH
T ss_pred EEeCCEEEEeccccchhH
Confidence 999999999999977653
No 28
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=100.00 E-value=4.7e-36 Score=325.84 Aligned_cols=350 Identities=15% Similarity=0.145 Sum_probs=288.8
Q ss_pred CceEEEEEEeecCC---cchhhHHHHHHHHHHHHhcCCCCC-CCC--EEEEEEecCCCCHHHHHHHHHHHH-hcCceEEE
Q 003958 29 PSVVNIGALLSFST---NVGKVAKLAIKAAVDDVNSDPTTL-GGT--KLKLQMQDCNHSGFLALAEALHLM-EGQTVAII 101 (784)
Q Consensus 29 ~~~i~IG~i~~~~~---~~g~~~~~a~~~Ave~IN~~~~il-~g~--~l~~~~~D~~~~~~~a~~~~~~li-~~~v~aii 101 (784)
.++|+||+++|++. ..|.....|+++|+++||+++|++ +|+ +|++++.|+++++..+.+.+.+|+ .++|.+||
T Consensus 2 ~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~~~G~~~~l~l~~~D~~~~~~~a~~~~~~li~~~~V~~ii 81 (391)
T 3eaf_A 2 SLTINVGLLVDETGPTSDVGKGYSLGAELAFKYFNEKGIYTKDGVRVNINYIKRDYAYNPTTAEEYYREFRDRYGVIAII 81 (391)
T ss_dssp CEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHCEECTTCCEEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSEEE
T ss_pred CccEEEEEEEcCCCchhhhhHHHHHHHHHHHHHHHHcCCCccCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEE
Confidence 46899999999984 457788999999999999999985 699 999999999999999999999999 66999999
Q ss_pred ccCchhhHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHH-cCCcEEEEEEE-cCCCcch
Q 003958 102 GPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDH-YGWREVIAIYV-DDDHGRN 179 (784)
Q Consensus 102 Gp~~s~~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~-~~w~~v~ii~~-d~~~g~~ 179 (784)
| .+|..+.++++++...++|+|++.++++ +. .+|++||+.|++..++.++++++.+ +||++|++|+. +++||+.
T Consensus 82 G-~~s~~~~a~~~~~~~~~iP~i~~~~~~~-~~--~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~g~~ 157 (391)
T 3eaf_A 82 G-WGTADTEKLSDQVDTDKITYISASYSAK-LL--VKPFNFYPAPDYSTQACSGLAFLASEFGQGKLALAYDSKVAYSRS 157 (391)
T ss_dssp E-CCHHHHHHHHHHHHHHTCEEEESCCCGG-GT--TSTTEECSSCCHHHHHHHHHHHHHHHHCSEEEEEEECTTCHHHHT
T ss_pred E-cCcHHHHHHHHHHhhcCCeEEecccchh-hc--CCCcEEEeCCCHHHHHHHHHHHHHHhcCCCEEEEEEecCChhHHH
Confidence 9 6888899999999999999999766543 33 5799999999999999999999877 69999999999 9999999
Q ss_pred hHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHH--hhcCCceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEEecC
Q 003958 180 GIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVK--VALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATS 257 (784)
Q Consensus 180 ~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~--l~~~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~ 257 (784)
..+.+++.+++.|++++....++ .+..|+..++++ +++.++++|++.+....+..+++++++.|+..+ |++++
T Consensus 158 ~~~~~~~~l~~~G~~v~~~~~~~--~~~~d~~~~~~~~~l~~~~~dav~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~ 232 (391)
T 3eaf_A 158 PIGAIKKAAPSLGLQVVGDYDLP--LRATEADAERIAREMLAADPDYVWCGNTISSCSLLGRAMAKVGLDAF---LLTNV 232 (391)
T ss_dssp THHHHHHHTGGGTEEEEEEEECC--TTCCHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHHHHHTCCCE---EEECG
T ss_pred HHHHHHHHHHHcCCceeeeeccC--CCCcCHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHHHHCCCCce---EEEec
Confidence 99999999999999999888777 456789999999 999999999999988899999999999998764 55554
Q ss_pred ccccccccCCCCCCCcccccee-eEEEeeec-----CCchhHHHHHHHHHhhccCCCCCCCCCCChhHHHHhhHHHHHHH
Q 003958 258 WLSTALDTNSPFPSDVMDDIQG-VLTLRTYT-----PDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLAR 331 (784)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~-----~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~~a~ 331 (784)
+.... ... .......+| ++...++. .+.+. .+|.++|+++++. .....+.++..+|||++++++
T Consensus 233 ~~~~~-~~~----~~~g~~~~g~~~~~~~~~~~~~~~~~~~-~~f~~~~~~~~~~----~~p~~~~~~~~~yda~~~l~~ 302 (391)
T 3eaf_A 233 WGFDE-RSP----QLIGEGGYGKVFGISPFIYPMFGQDVEG-IQTIFEAARMNGV----SEDQINLRVVQGFVNVWLLIK 302 (391)
T ss_dssp GGCST-THH----HHHCGGGTTSEEEEESBCCGGGCTTCHH-HHHHHHHHHHTTC----CGGGCCHHHHHHHHHHHHHHH
T ss_pred cCCCH-HHH----HhhhhhccCcEEEEEEecCcccCCCCch-hHHHHHHHHHhCC----CCcccccHHHHHHHHHHHHHH
Confidence 33221 110 112345788 77766554 34454 6799999998861 001124789999999999999
Q ss_pred HHHHHhhcCCccccccCCccccccCCcccccccccCCchHHHHHHHhcccc--ceee-eEEEecCCCCcCCcEEEEEe-e
Q 003958 332 AINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMT--GTAG-PARFNSHGDLINPAYEIINV-I 407 (784)
Q Consensus 332 Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~~f~--g~tG-~v~Fd~~g~~~~~~~~I~~~-~ 407 (784)
|++++.+.+. ...++..+.++|++.+|+ |++| +++||+++++....+.|.++ +
T Consensus 303 Al~~a~~~g~-----------------------~~~~~~~v~~aL~~~~~~~~G~~G~~i~f~~~~~~~~~~~~i~~~~~ 359 (391)
T 3eaf_A 303 AIESVTSQDL-----------------------QERGGEALKEALEANTFDLGGITADTIDYEPGFHLAYRKVFIIKLGE 359 (391)
T ss_dssp HHTTSCHHHH-----------------------HHHTHHHHHHHHHHCCBCSTTCBSSCBCCBTTBCCCCCCEEEEEECT
T ss_pred HHHHHHhcCC-----------------------CCCCHHHHHHHHHhCCCCCCCccccceeeCCCCCCcceEEEEEEEec
Confidence 9998622110 011588999999998898 9999 99999876667888999999 8
Q ss_pred ccceEEEEEecCC
Q 003958 408 GTGYRRIGYWSNY 420 (784)
Q Consensus 408 ~~~~~~VG~w~~~ 420 (784)
+++++.|+.|...
T Consensus 360 ~G~~~~v~~~~~~ 372 (391)
T 3eaf_A 360 NGELQLMGKFEAP 372 (391)
T ss_dssp TSSEEEEEEECCC
T ss_pred CCEEEEeeeecCc
Confidence 8999999999754
No 29
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=100.00 E-value=3e-36 Score=326.00 Aligned_cols=335 Identities=14% Similarity=0.114 Sum_probs=283.7
Q ss_pred CCceEEEEEEeecCC---cc-hhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHh-cCceEEEc
Q 003958 28 RPSVVNIGALLSFST---NV-GKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLME-GQTVAIIG 102 (784)
Q Consensus 28 ~~~~i~IG~i~~~~~---~~-g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~-~~v~aiiG 102 (784)
.+++|+||+++|++. .. |.....|+++|++++ ++++ .|++++++++|+++++..+.+.+.+|++ ++|.+|||
T Consensus 3 ~~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~a~~~i--~ggi-~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG 79 (379)
T 3n0w_A 3 STGQVTLGVLTDMSSVYADSAGKGSVAAVQLAIEDV--GGKA-LGQPVKLVSADYQMKTDVALSIAREWFDRDGVDAIFD 79 (379)
T ss_dssp ---CCEEEEEECSSSTTTTTSHHHHHHHHHHHHHHT--TTEE-TTEECEEEEEECTTCHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CCCcEEEEEEeCCccccccccCHHHHHHHHHHHHHh--cCCC-CCeEEEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEc
Confidence 356899999999983 34 778899999999999 4566 4899999999999999999999999998 69999999
Q ss_pred cCchhhHHHHHHhhhcCCccEEecccCCCCCCc-CCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCCCcchhH
Q 003958 103 PQDAVTSHVVSHVANELQVPLLSFSATDPTLSS-LQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGI 181 (784)
Q Consensus 103 p~~s~~~~~va~~~~~~~ip~Is~~a~~~~l~~-~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~ 181 (784)
|.+|..+.++++++..+++|+|++.++++.+++ ..+|++||+.|++..++.++++++.+++|++|++|++|+++|+...
T Consensus 80 ~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~ 159 (379)
T 3n0w_A 80 VVNSGTALAINNLVKDKKKLAFITAAAADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLAKGYKTWFLMLPDAAYGDLMN 159 (379)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEECSCCCTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCceEEEcCCCchhhhcccCCCcEEEEeCChHHHHHHHHHHHHHcCCcEEEEEecccchhHHHH
Confidence 999999999999999999999999998888887 4689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEEecCc-cc
Q 003958 182 AALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSW-LS 260 (784)
Q Consensus 182 ~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~-~~ 260 (784)
+.+++.+++.|++++....++ .+..|+..+++++++.++++|++.+...++..++++++++|+..+.+ ++.+.. +.
T Consensus 160 ~~~~~~~~~~G~~v~~~~~~~--~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~ 236 (379)
T 3n0w_A 160 AAIRRELTAGGGQIVGSVRFP--FETQDFSSYLLQAKASGAQLIVSTSGGAANINIMKQAREFGLPSKTQ-KVGGMIDIL 236 (379)
T ss_dssp HHHHHHHHHHTCEEEEEEEEC--TTCCCCHHHHHHHHHHTCSEEEECCCHHHHHHHHHHHHHTTCSCSSC-EEECCBCCH
T ss_pred HHHHHHHHHcCCEEEEEEeCC--CCCCCHHHHHHHHHHCCCCEEEEecccchHHHHHHHHHHcCCCCCCc-EEEecccch
Confidence 999999999999999888777 34567899999999999999999988889999999999999987643 444433 22
Q ss_pred cccccCCCCCCCccccceeeEEEeeecC-CchhHHHHHHHHHhhccCCCCCCCCCCChhHHHHhhHHHHHHHHHHHHhhc
Q 003958 261 TALDTNSPFPSDVMDDIQGVLTLRTYTP-DSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAINSFFKQ 339 (784)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~~a~Al~~~~~~ 339 (784)
.... ....+..+|++...++.+ ..+..++|.++|+++++ ..++.+++.+|||++++++|++++..
T Consensus 237 ~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g-------~~p~~~~~~~Yda~~~~~~Al~~ag~- 302 (379)
T 3n0w_A 237 TDVK------SAGLRVMQGQEYATSFYWNMDDRTRAFAKRFYAKMG-------KMPTNNQAGGYSAALQYLKAVNAIGS- 302 (379)
T ss_dssp HHHH------HHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHS-------SCCCHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHH------hhCHHhhCCeEEEeeecCCCCHHHHHHHHHHHHHHC-------CCCChHHHHHHHHHHHHHHHHHHhCC-
Confidence 2211 111245678776665544 36789999999999987 35678999999999999999999621
Q ss_pred CCccccccCCccccccCCcccccccccCCchHHHHHHHhccccceeee-EEEecCCCCcCCcEEEEEeeccc
Q 003958 340 GGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGP-ARFNSHGDLINPAYEIINVIGTG 410 (784)
Q Consensus 340 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~~f~g~tG~-v~Fd~~g~~~~~~~~I~~~~~~~ 410 (784)
.++..|.++|++++|+|..|. ++|+++|++ ...+.|.++++++
T Consensus 303 ---------------------------~~~~~v~~aL~~~~~~~~~G~~~~f~~~g~~-~~~~~i~~~~~~~ 346 (379)
T 3n0w_A 303 ---------------------------KDPQKVFAYLKTIKFDDAVTRHGTLRPGGRL-VRDMYLVRAKKPE 346 (379)
T ss_dssp ---------------------------CCHHHHHHHHTTCCBCSSSCCSBEECTTSBE-ECCEEEEEECCGG
T ss_pred ---------------------------CCHHHHHHHHhcCCccccCCCceeECCCCCc-ccceEEEEEEchh
Confidence 158999999999999999886 999999986 5678899988644
No 30
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=100.00 E-value=7.5e-36 Score=322.09 Aligned_cols=330 Identities=13% Similarity=0.105 Sum_probs=269.0
Q ss_pred ceEEEEEEeecCC---cchhhHHHHHHHHHHHHhc-CCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc-CceEEEccC
Q 003958 30 SVVNIGALLSFST---NVGKVAKLAIKAAVDDVNS-DPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG-QTVAIIGPQ 104 (784)
Q Consensus 30 ~~i~IG~i~~~~~---~~g~~~~~a~~~Ave~IN~-~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~-~v~aiiGp~ 104 (784)
++|+||+++|++. ..|.....|+++|+++||+ .+|+ .|++|+++++|+++++..++..+++|+.+ +|.+||||.
T Consensus 3 ~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~~ggi-~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~ 81 (374)
T 3n0x_A 3 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTL-DGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTS 81 (374)
T ss_dssp -CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHTTTCCEE-TTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECS
T ss_pred CCEEEEEecCCCCchhhhCHHHHHHHHHHHHHHhccCCCc-CCEEEEEEEecCCCCHHHHHHHHHHHHHhCCceEEEcCC
Confidence 5899999999983 4578889999999999998 6777 59999999999999999999999999985 999999999
Q ss_pred chhhHHHHHHhhhcCCccEEecccCCCCCCcC-CCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCCCcchhHHH
Q 003958 105 DAVTSHVVSHVANELQVPLLSFSATDPTLSSL-QFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAA 183 (784)
Q Consensus 105 ~s~~~~~va~~~~~~~ip~Is~~a~~~~l~~~-~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~ 183 (784)
+|..+.+++++++.+++|+|++.++++.+++. .+||+||+.|++..++.+++.++++++| ++++|+.|++||+...+.
T Consensus 82 ~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~-~v~ii~~~~~~g~~~~~~ 160 (374)
T 3n0x_A 82 SSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQGV-TIATLAQDYAFGRDGVAA 160 (374)
T ss_dssp SHHHHHHHHHHHHHHTCCEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHCCTTE-EEEEEEESSHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCccEEEcCCCchhhhcCCCCCeEEEccCCchhHHHHHHHHHhccCC-EEEEEeCCchHHHHHHHH
Confidence 99999999999999999999988888888874 5899999999999999999988888998 899999999999999999
Q ss_pred HHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCC-----ceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEEecCc
Q 003958 184 LGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTE-----SRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSW 258 (784)
Q Consensus 184 l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~-----~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~ 258 (784)
+++.+++.|++|+..+.++ .+..|++.++++|++.+ +++|++....... .+.++.+.++...++.++..+.
T Consensus 161 ~~~~~~~~G~~vv~~~~~~--~~~~d~~~~l~~i~~~~~~~~~~d~v~~~~~g~~~--~~~~~~~~~~~~~g~~~~~~~~ 236 (374)
T 3n0x_A 161 FKEALAKTGATLATEEYVP--TTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGD--PLTKLQDMDPKRYGIELSTGGN 236 (374)
T ss_dssp HHHHHTTTTCEEEEEEEEC--TTCCCCHHHHHHHHHHHTTCSSEEEEEECCCSSSC--HHHHHHHTCGGGGTEEEEECCC
T ss_pred HHHHHHHcCCEEeeeecCC--CCCccHHHHHHHHHhcCCCCCCCCEEEEEecCCcH--HHHHHHHcchhhcCCeeeeccc
Confidence 9999999999999888887 45678999999999988 9999987443222 2345555555444455544332
Q ss_pred cccccccCCCCCCCccccceeeEEEee---ecCCchhHHHHHHHHHhhccCCCCCCCCCCChhHHHHhhHHHHHHHHHHH
Q 003958 259 LSTALDTNSPFPSDVMDDIQGVLTLRT---YTPDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAINS 335 (784)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~~a~Al~~ 335 (784)
...... ......|+.+... ..++.+..++|.++|+++|+ ..++.++..+|||++++++|+++
T Consensus 237 ~~~~~~--------~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~y~~~~g-------~~p~~~a~~~Yda~~~l~~Al~~ 301 (374)
T 3n0x_A 237 ILPALA--------AYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFN-------APPDFFTAGGFSAAMAVVTAVQK 301 (374)
T ss_dssp CTTGGG--------GGGGSTTCEEEESCCTTSCCSHHHHHHHHHHHHHHS-------SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhh--------hhhhhcCccccceeccCCCCCHHHHHHHHHHHHHHC-------CCCChhHHHHHHHHHHHHHHHHH
Confidence 211111 0122344444433 33467889999999999987 35678999999999999999999
Q ss_pred HhhcCCccccccCCccccccCCcccccccccCCchHHHHHHHhccccceeeeEEEecCCCCcCCcEEEEEeec
Q 003958 336 FFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVIG 408 (784)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~g~~~~~~~~I~~~~~ 408 (784)
+.. .++..|.++|++++|+|++|+++|++++++....+.|++++.
T Consensus 302 ag~----------------------------~~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~ 346 (374)
T 3n0x_A 302 AKS----------------------------TDTEKLIAAMEGMEFDTPKGKMVFRKEDHQALQSMYHFKVKV 346 (374)
T ss_dssp HTS----------------------------CCHHHHHHHHTTCEEEETTEEEEECTTTCBEECCEEEEEEEC
T ss_pred hCC----------------------------CCHHHHHHHHhcCCccCCCCCEEECcccCccccceEEEEEEe
Confidence 611 158899999999999999999999964334577889999875
No 31
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=100.00 E-value=1.8e-35 Score=318.71 Aligned_cols=346 Identities=16% Similarity=0.190 Sum_probs=291.4
Q ss_pred CCceEEEEEEeecCC---cchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHh-cCceEEEcc
Q 003958 28 RPSVVNIGALLSFST---NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLME-GQTVAIIGP 103 (784)
Q Consensus 28 ~~~~i~IG~i~~~~~---~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~-~~v~aiiGp 103 (784)
..++|+||+++|++. ..|.....|+++|++++|. ++ +|++|++++.|+++++..+.+.+.+++. ++|.+||||
T Consensus 3 a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~~~~--~i-~G~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~~iiG~ 79 (368)
T 4eyg_A 3 AEDTFKVGLIVPMTGGQASTGKQIDNAIKLYIKKHGD--TV-AGKKIEVILKDDAAIPDNTKRLAQELIVNDKVNVIAGF 79 (368)
T ss_dssp -CCEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHCS--EE-TTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCCcEEEEEEeCCcCcchhccHHHHHHHHHHHHHcCC--CC-CCeEEEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEECC
Confidence 357999999999984 3477889999999999974 34 5999999999999999999999999998 699999999
Q ss_pred CchhhHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCCCcchhHHH
Q 003958 104 QDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAA 183 (784)
Q Consensus 104 ~~s~~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~ 183 (784)
.+|..+.++++++..+++|+|++.++++.+++. +|++||+.|++..++.++++++.++||++|++|+.++.+|+...+.
T Consensus 80 ~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~g~~~~~~ 158 (368)
T 4eyg_A 80 GITPAALAAAPLATQAKVPEIVMAAGTSIITER-SPYIVRTSFTLAQSSIIIGDWAAKNGIKKVATLTSDYAPGNDALAF 158 (368)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhCCceEEeccCCChhhccC-CCCEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCchHhHHHHHH
Confidence 999999999999999999999998888777765 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEEecCcccccc
Q 003958 184 LGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTAL 263 (784)
Q Consensus 184 l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~ 263 (784)
+++.+++.|++++....++ .+..|+..+++++++.++++|++.+....+..+++++++.|+..+++.|++++++....
T Consensus 159 ~~~~l~~~g~~v~~~~~~~--~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~~v~~~~~~~~~~~~ 236 (368)
T 4eyg_A 159 FKERFTAGGGEIVEEIKVP--LANPDFAPFLQRMKDAKPDAMFVFVPAGQGGNFMKQFAERGLDKSGIKVIGPGDVMDDD 236 (368)
T ss_dssp HHHHHHHTTCEEEEEEEEC--SSSCCCHHHHHHHHHHCCSEEEEECCTTCHHHHHHHHHHTTGGGTTCEEEEETTTTCHH
T ss_pred HHHHHHHcCCEEEEEEeCC--CCCCcHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHHcCCCcCCceEEecCcccCHH
Confidence 9999999999998877776 34567889999999999999999888889999999999999886657788887433221
Q ss_pred ccCCCCCCCccccceeeEEEeeecC--CchhHHHHHHHHHhhccCCCCCCCCCCChhHHHHhhHHHHHHHHHHHHhhcCC
Q 003958 264 DTNSPFPSDVMDDIQGVLTLRTYTP--DSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAINSFFKQGG 341 (784)
Q Consensus 264 ~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~~a~Al~~~~~~~~ 341 (784)
.. .......+|++...++.+ +.+..++|.++| ++++. ..++.++..+|||++++++|++++..
T Consensus 237 ~~-----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~-~~~~~------~~p~~~~~~~yda~~~~~~al~~~g~--- 301 (368)
T 4eyg_A 237 LL-----NSMGDAALGVVTAHMYSAAHPSAMNKEFVAAY-KKEFG------QRPGFMAVGGYDGIHLVFEALKKTGG--- 301 (368)
T ss_dssp HH-----TTCCGGGTTCEEEESCCTTCCSHHHHHHHHHH-HHHHS------SCCCHHHHHHHHHHHHHHHHHHHTTT---
T ss_pred HH-----HhhhhhhCCeEEeeecCCCCCCHHHHHHHHHH-HHhCC------CCCChHHHHHHHHHHHHHHHHHHhCC---
Confidence 11 122345678777766554 468899999999 77731 35678899999999999999999621
Q ss_pred ccccccCCccccccCCcccccccccCCchHHHHHHHhccccceeeeEEEe-cCCCCcCCcEEEEEee--ccce--EEEEE
Q 003958 342 NLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFN-SHGDLINPAYEIINVI--GTGY--RRIGY 416 (784)
Q Consensus 342 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd-~~g~~~~~~~~I~~~~--~~~~--~~VG~ 416 (784)
..++..|.++|++++|+|++|+++|| ++|+ ....+.|.+++ ++++ +.++.
T Consensus 302 ------------------------~~~~~~l~~al~~~~~~g~~G~i~f~~~~~~-~~~~~~i~~~~~~~G~~~~v~~~~ 356 (368)
T 4eyg_A 302 ------------------------KADGDSLIAAMKGMKWESPRGPISIDPETRD-IVQNIYIRKVEKVDGELYNIEFAK 356 (368)
T ss_dssp ------------------------CCSHHHHHHHHTTCEEEETTEEEEECTTTCC-EEEEEEEEEEEEETTEEEEEEEEE
T ss_pred ------------------------CCCHHHHHHHHHcCCcccCCCCeEECcccCC-cccceEEEEEEecCCeEEEEEeec
Confidence 11488999999999999999999999 6776 46778899998 7777 44566
Q ss_pred ecC
Q 003958 417 WSN 419 (784)
Q Consensus 417 w~~ 419 (784)
|.+
T Consensus 357 ~~~ 359 (368)
T 4eyg_A 357 FDA 359 (368)
T ss_dssp EEE
T ss_pred ccc
Confidence 554
No 32
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=100.00 E-value=1e-35 Score=320.00 Aligned_cols=339 Identities=13% Similarity=0.109 Sum_probs=286.6
Q ss_pred CceEEEEEEeecCC---cchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc-CceEEEccC
Q 003958 29 PSVVNIGALLSFST---NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG-QTVAIIGPQ 104 (784)
Q Consensus 29 ~~~i~IG~i~~~~~---~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~-~v~aiiGp~ 104 (784)
+++|+||+++|++. ..|.....|+++|++++|+++|++ |+++++++.|+++++..+.+.+.+++.+ +|.+||||.
T Consensus 3 ~~~i~IG~~~p~sG~~~~~g~~~~~g~~~a~~~~N~~ggi~-G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iig~~ 81 (364)
T 3lop_A 3 LADISVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGGIN-GETIRLVARDDEQKIEQTVRNVRDMARVDNPVALLTVV 81 (364)
T ss_dssp --CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBT-TBCEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEECCC
T ss_pred CCeEEEEEEecCCCcchhccHHHHHHHHHHHHHHHhcCCcC-CeEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEEecC
Confidence 46899999999973 457788999999999999999985 8999999999999999999999999996 999999999
Q ss_pred chhhHHHHHH--hhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCCCcchhHH
Q 003958 105 DAVTSHVVSH--VANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIA 182 (784)
Q Consensus 105 ~s~~~~~va~--~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~ 182 (784)
++..+.++++ ++...++|+|++.++++.+++ +|++||+.|++..++.++++++.++||++|++|+.++++|+...+
T Consensus 82 ~s~~~~~~~~~~~~~~~~iP~v~~~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~l~~~g~~~iaii~~~~~~g~~~~~ 159 (364)
T 3lop_A 82 GTANVEALMREGVLAEARLPLVGPATGASSMTT--DPLVFPIKASYQQEIDKMITALVTIGVTRIGVLYQEDALGKEAIT 159 (364)
T ss_dssp CHHHHHHHHHTTHHHHHTCCEESCSCCCGGGGS--CTTEECCSCCHHHHHHHHHHHHHHTTCCCEEEEEETTHHHHHHHH
T ss_pred CCHHHHhhCchhhHHhcCCcEEEcccCcHhhcc--CCcEEEeCCChHHHHHHHHHHHHHcCCceEEEEEeCchhhHHHHH
Confidence 9999999999 999999999999888877766 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEEecCccccc
Q 003958 183 ALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTA 262 (784)
Q Consensus 183 ~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~ 262 (784)
.+++.+++.|++++....++ .+..++..+++++++.++++|++.+....+..++++++++|+..+ |++.+.+...
T Consensus 160 ~~~~~~~~~G~~v~~~~~~~--~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~---~i~~~~~~~~ 234 (364)
T 3lop_A 160 GVERTLKAHALAITAMASYP--RNTANVGPAVDKLLAADVQAIFLGATAEPAAQFVRQYRARGGEAQ---LLGLSSIDPG 234 (364)
T ss_dssp HHHHHHHTTTCCCSEEEEEC--TTSCCCHHHHHHHHHSCCSEEEEESCHHHHHHHHHHHHHTTCCCE---EEECTTSCHH
T ss_pred HHHHHHHHcCCcEEEEEEec--CCCccHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHHHHcCCCCe---EEEeccCChH
Confidence 99999999999988777676 345678899999999999999998888899999999999998765 6766654322
Q ss_pred cccCCCCCCCcc-ccceeeEEEee----ecCCchhHHHHHHHHHhhccCCCCCCCCCCChhHHHHhhHHHHHHHHHHHHh
Q 003958 263 LDTNSPFPSDVM-DDIQGVLTLRT----YTPDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAINSFF 337 (784)
Q Consensus 263 ~~~~~~~~~~~~-~~~~g~~~~~~----~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~~a~Al~~~~ 337 (784)
... .... ...+|++.... ..+..+..++|.+.|+++++. ...++.++..+|||++++++|++++.
T Consensus 235 ~~~-----~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-----~~~p~~~a~~~yda~~~~~~al~~ag 304 (364)
T 3lop_A 235 ILQ-----KVAGLDAVRGYSLALVMPNPGKSVNPVIREFNRARAAVGAK-----DVDLSFRAVEGFVAAKVLAEAIRRAG 304 (364)
T ss_dssp HHH-----HHHCHHHHTTCEEEECSCCTTCTTSHHHHHHHHHHHHHTCT-----TCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHH-----HHhChhhcCCeEEEEEeCCCCCCCCHHHHHHHHHHHHhcCC-----CCCCChHHHHHHHHHHHHHHHHHHhC
Confidence 111 1122 45677766542 225678899999999998862 11567889999999999999999961
Q ss_pred hcCCccccccCCccccccCCcccccccccCCchHHHHHHHhc-cccc-eeeeEEEecCCCCcCCcEEEEEeeccceE
Q 003958 338 KQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQA-NMTG-TAGPARFNSHGDLINPAYEIINVIGTGYR 412 (784)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~-~f~g-~tG~v~Fd~~g~~~~~~~~I~~~~~~~~~ 412 (784)
. ..++..|.++|+++ +|+| .+|+++|++++++......|.+++++++.
T Consensus 305 ---~------------------------~~~~~~v~~aL~~~~~~~~~~~g~i~f~~~~~~~~~~~~i~~~~~~~~~ 354 (364)
T 3lop_A 305 ---P------------------------KPTREQVRHALTELRDYDVGGGFTVDFTDRSRPGSHYIELGVVGPNGLV 354 (364)
T ss_dssp ---S------------------------SCCHHHHHHHHHTCEEEESSTTCEEECSSTTSCSCCCCEEEEECTTSCE
T ss_pred ---C------------------------CCCHHHHHHHHHhcCCccCCCCeeeecCCCCcCCcceEEEEEEcCCCcc
Confidence 1 11588999999999 6999 99999999988766777788888876653
No 33
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=100.00 E-value=6.3e-35 Score=316.77 Aligned_cols=343 Identities=16% Similarity=0.197 Sum_probs=281.1
Q ss_pred CCceEEEEEEeecCC---cchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc-CceEEEcc
Q 003958 28 RPSVVNIGALLSFST---NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG-QTVAIIGP 103 (784)
Q Consensus 28 ~~~~i~IG~i~~~~~---~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~-~v~aiiGp 103 (784)
..++|+||+++|++. ..|.....|+++|+++|| |+++++++.|+++++..+.+.+.+++++ +|.+||||
T Consensus 24 a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~-------G~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~ 96 (386)
T 3sg0_A 24 AQAEIKIGITMSASGPGAALGQPQSKTVAALPKEIG-------GEKVTYFALDDESDPTKAAQNARKLLSEEKVDVLIGS 96 (386)
T ss_dssp -CCCEEEEEEECCSSTTHHHHHHHHHHGGGSCSEET-------TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEECC
T ss_pred CCCceEEEEEeccCCchhhhcHHHHHHHHHHHHHcC-------CEEEEEEEecCCCCHHHHHHHHHHHHhhcCceEEECC
Confidence 356999999999984 356778899999999983 7899999999999999999999999998 89999999
Q ss_pred CchhhHHHHHHhhhcCCccEEecccCCCCCC--cCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCCCcchhH
Q 003958 104 QDAVTSHVVSHVANELQVPLLSFSATDPTLS--SLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGI 181 (784)
Q Consensus 104 ~~s~~~~~va~~~~~~~ip~Is~~a~~~~l~--~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~ 181 (784)
.++..+.++++++...++|+|++.++++.++ ...+|++||+.|++..++.++++++.++||++|++|+.++++|+...
T Consensus 97 ~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~ 176 (386)
T 3sg0_A 97 SLTPVSLPLIDIAAEAKTPLMTMAAAAILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKTGAKKVGYIGFSDAYGEGYY 176 (386)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEECCCCGGGTCSCCTTGGGEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHH
T ss_pred CCchhHHHHHHHHHhcCCeEEEecCCCccccccCCCCCcEEecCCCcHHHHHHHHHHHHhcCCCEEEEEecCchHHHHHH
Confidence 9999999999999999999999988877776 35689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEEecCcccc
Q 003958 182 AALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLST 261 (784)
Q Consensus 182 ~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~ 261 (784)
+.+++.+++.|++++..+.++ .+..++...++++++.++++|++.+....+..+++++++.|+..+ ++...++..
T Consensus 177 ~~~~~~l~~~g~~v~~~~~~~--~~~~d~~~~~~~~~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~ 251 (386)
T 3sg0_A 177 KVLAAAAPKLGFELTTHEVYA--RSDASVTGQVLKIIATKPDAVFIASAGTPAVLPQKALRERGFKGA---IYQTHGVAT 251 (386)
T ss_dssp HHHHHHHHHHTCEECCCEEEC--TTCSCCHHHHHHHHHTCCSEEEEECCSGGGHHHHHHHHHTTCCSE---EECCGGGCS
T ss_pred HHHHHHHHHcCCEEEEEEeeC--CCCCcHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCCc---EEeccccCC
Confidence 999999999999998766666 345678899999999999999999988899999999999998754 565554332
Q ss_pred ccccCCCCCCCccccceeeEEEeee------cC-C---chhHHHHHHHHHhhccCCCCCCCCCCChhHHHHhhHHHHHHH
Q 003958 262 ALDTNSPFPSDVMDDIQGVLTLRTY------TP-D---SVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLAR 331 (784)
Q Consensus 262 ~~~~~~~~~~~~~~~~~g~~~~~~~------~~-~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~~a~ 331 (784)
.... .......+|++....+ .+ . .+..++|.++|+++++. ..++.++..+|||++++++
T Consensus 252 ~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~------~~p~~~~~~~yda~~~~~~ 320 (386)
T 3sg0_A 252 EEFI-----KLGGKDVEGAIFAGEAFSGAEDMPADSPFRKVKARFVDAYKAANGG------AAPTIFGVHLWDSMTLVEN 320 (386)
T ss_dssp HHHH-----HHHGGGGTTCEEEECHHHHGGGSCTTCHHHHHHHHHHHHHHHHTTT------CCCCHHHHHHHHHHHHHHH
T ss_pred HHHH-----HhhhhhcCCeEEecccccccccCCCCCcchHHHHHHHHHHHHHhCC------CCCChhHHHHHHHHHHHHH
Confidence 1110 1122456777665431 12 2 24589999999999873 2457889999999999999
Q ss_pred HHHHHhhcCCccccccCCccccccCCcccccccccCCchHHHHHHHhc-cccceeeeEEEecCCCC--cCCcEEEEEeec
Q 003958 332 AINSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQA-NMTGTAGPARFNSHGDL--INPAYEIINVIG 408 (784)
Q Consensus 332 Al~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~-~f~g~tG~v~Fd~~g~~--~~~~~~I~~~~~ 408 (784)
|++++.+.... +.+.++..+.++|+++ +|+|++|+++|++++++ ....+.|+++++
T Consensus 321 al~~a~~~~~~---------------------g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~ 379 (386)
T 3sg0_A 321 AIPAALKAAKP---------------------GTPEFRAAIRDQIEKSKDLALNNGLSNMTPDNHNGYDERSAFLIEIRD 379 (386)
T ss_dssp HHHHHHHHCCT---------------------TSHHHHHHHHHHHTTCCSEEETTEEECCCSSCSSCCCGGGCEEEEEET
T ss_pred HHHHhhhccCC---------------------CCcchHHHHHHHHHhccCccccceeEEECCCcCCCCCCCceEEEEEEC
Confidence 99998654210 0112378899999999 79999999999986543 245689999999
Q ss_pred cceEEE
Q 003958 409 TGYRRI 414 (784)
Q Consensus 409 ~~~~~V 414 (784)
|+++.+
T Consensus 380 G~~~~~ 385 (386)
T 3sg0_A 380 GAFRLK 385 (386)
T ss_dssp TEEEEC
T ss_pred CEEEec
Confidence 888764
No 34
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=100.00 E-value=1.6e-32 Score=297.31 Aligned_cols=347 Identities=12% Similarity=0.058 Sum_probs=280.5
Q ss_pred CCceEEEEEEeecCC---cchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHh-cCceEEEcc
Q 003958 28 RPSVVNIGALLSFST---NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLME-GQTVAIIGP 103 (784)
Q Consensus 28 ~~~~i~IG~i~~~~~---~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~-~~v~aiiGp 103 (784)
.+++++||+++|++. ..+.....|+++|++++|+++|++ |+++++++.|+++++..+.+.+.++++ ++|.+|||+
T Consensus 4 ~~~~~~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~N~~ggi~-G~~l~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~ 82 (385)
T 1pea_A 4 HQERPLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVG-GRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGC 82 (385)
T ss_dssp ----CEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHTTTTBT-TBCCEEEEECCTTCHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred CCCCeEEEEEECCCCcchhcCHHHHHHHHHHHHHhccccCCC-CeEEEEEEeCCCCCHHHHHHHHHHHHhhCCcEEEECC
Confidence 356899999999974 356788899999999999999996 899999999999999999999999997 799999999
Q ss_pred CchhhHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCCCcchhHHH
Q 003958 104 QDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAA 183 (784)
Q Consensus 104 ~~s~~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~ 183 (784)
.++..+.++.+++...++|+|++.+.+. ...++++||+.+++..++.+++++|.+.+|++|++|+.++.+++...+.
T Consensus 83 ~~s~~~~~~~~~~~~~~iP~v~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~ 159 (385)
T 1pea_A 83 YMSHTRKAVMPVVERADALLCYPTPYEG---FEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNHV 159 (385)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEECSCCCC---CCCCTTEEECSCCGGGTHHHHHHHHHTTTCSEEEEEEESSHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhcCceEEECCcccC---ccCCCCEEEecCChHHhHHHHHHHHHHccCcEEEEEeCCChHHHHHHHH
Confidence 9988888889999999999999865421 1236899999999999999999999999999999999988889999999
Q ss_pred HHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEEecCcccccc
Q 003958 184 LGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTAL 263 (784)
Q Consensus 184 l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~ 263 (784)
+++.+++.|+++.....++......++..+++++++.++++|++.+....+..++++++++|+....+.++..++.....
T Consensus 160 ~~~~l~~~G~~v~~~~~~~~~~~~~d~~~~~~~l~~~~pdaI~~~~~~~~a~~~~~~~~~~G~~~~~~~~~~~~~~~~~~ 239 (385)
T 1pea_A 160 MRHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASLTTSEAEV 239 (385)
T ss_dssp HHHHHHHTTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCSEEEEECCTHHHHHHHHHHHHHHCSSCCCCEEESSCCHHHH
T ss_pred HHHHHHHcCCEEEEEEeecCCCCcchHHHHHHHHHHCCCCEEEEecccccHHHHHHHHHHcCCCcCCceEEecccchHHH
Confidence 99999999999886655553236778999999998889999998877778999999999999875444455544322111
Q ss_pred ccCCCCCCCccccceeeEEEeeec--CCchhHHHHHHHHHhhccCCCCCCCCCCChhHHHHhhHHHHHHHHHHHHhhcCC
Q 003958 264 DTNSPFPSDVMDDIQGVLTLRTYT--PDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAINSFFKQGG 341 (784)
Q Consensus 264 ~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~~a~Al~~~~~~~~ 341 (784)
. ....+..+|+++..++. .+.+..++|.++|+++++. ...++.++..+|||++++++|++++..
T Consensus 240 ~------~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g~-----~~~~~~~~~~~yda~~~~~~Al~~ag~--- 305 (385)
T 1pea_A 240 A------KMESDVAEGQVVVAPYFSSIDTPASRAFVQACHGFFPE-----NATITAWAEAAYWQTLLLGRAAQAAGN--- 305 (385)
T ss_dssp T------TSCHHHHTTCEEEESCCTTCSSHHHHHHHHHHHTTSCT-----TCCCCHHHHHHHHHHHHHHHHHHHHTS---
T ss_pred H------hcCchhhCCeEEecccccccCCHHHHHHHHHHHHHhCC-----CCCCChHHHHHHHHHHHHHHHHHHhCC---
Confidence 1 11123567887776554 3577899999999998762 123567899999999999999999621
Q ss_pred ccccccCCccccccCCcccccccccCCchHHHHHHHhccccceeeeEEEecCCCCcCCcEEEEEe-eccceEEEEEe
Q 003958 342 NLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINV-IGTGYRRIGYW 417 (784)
Q Consensus 342 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~g~~~~~~~~I~~~-~~~~~~~VG~w 417 (784)
.++..|.++|++++|+|++|.++||++++.....+.|.++ ++++++.|...
T Consensus 306 -------------------------~~~~~l~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~g~~~~v~~~ 357 (385)
T 1pea_A 306 -------------------------WRVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVRWQS 357 (385)
T ss_dssp -------------------------CCHHHHHHHHTTCCEEETTEEEEECTTTSCEEBCCEEEEECTTSCEEEEEEC
T ss_pred -------------------------CCHHHHHHHHhhCcccCCCCCeEEcCCCCccccceEEEEEcCCCcEEEeecC
Confidence 1488999999999999999999999855445667889999 67888888654
No 35
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=100.00 E-value=4.9e-33 Score=299.02 Aligned_cols=341 Identities=15% Similarity=0.150 Sum_probs=278.8
Q ss_pred CCceEEEEEEeecCC---cchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc-CceEEEcc
Q 003958 28 RPSVVNIGALLSFST---NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG-QTVAIIGP 103 (784)
Q Consensus 28 ~~~~i~IG~i~~~~~---~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~-~v~aiiGp 103 (784)
..++|+||+++|++. ..|.....|+++|+++|| |+++++++.|+++++..+.+.+.+++.+ +|.+||||
T Consensus 4 a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~-------g~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~ 76 (362)
T 3snr_A 4 ETNEITVGISVTTTGPAAALGIPERNALEFVVKEIS-------GHPIKIIVLDDGGDPTAATTNARRFVTESKADVIMGS 76 (362)
T ss_dssp CCCCEEEEEEECCSSTTHHHHHHHHHGGGGSCSEET-------TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCCCeEEEEEecccCchhhcCHHHHHHHHHHHHHhC-------CeEEEEEEecCCCCHHHHHHHHHHHHhccCceEEEcC
Confidence 457999999999984 356678899999999983 7899999999999999999999999998 89999999
Q ss_pred CchhhHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCCCcchhHHH
Q 003958 104 QDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAA 183 (784)
Q Consensus 104 ~~s~~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~ 183 (784)
.++..+.++.+++...++|+|++.++ + +....+|++||+.|++..++.++++++.++||++|++|+.++.+|+...+.
T Consensus 77 ~~s~~~~~~~~~~~~~~ip~v~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~ 154 (362)
T 3snr_A 77 SVTPPSVAISNVANEAQIPHIALAPL-P-ITPERAKWSVVMPQPIPIMGKVLYEHMKKNNVKTVGYIGYSDSYGDLWFND 154 (362)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEESSCC-C-CCTTTTTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCccEEEecCC-c-cccCCCCcEEecCCChHHHHHHHHHHHHhcCCCEEEEEecCchHHHHHHHH
Confidence 99999999999999999999998776 3 334568999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEEecCcccccc
Q 003958 184 LGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTAL 263 (784)
Q Consensus 184 l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~ 263 (784)
+++.+++.|++++....++ .+..++...++++++.++++|++.+....+..+++++++.|+..+ ++...++....
T Consensus 155 ~~~~l~~~g~~v~~~~~~~--~~~~~~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~p---~i~~~g~~~~~ 229 (362)
T 3snr_A 155 LKKQGEAMGLKIVGEERFA--RPDTSVAGQALKLVAANPDAILVGASGTAAALPQTTLRERGYNGL---IYQTHGAASMD 229 (362)
T ss_dssp HHHHHHHTTCEEEEEEEEC--TTCSCCHHHHHHHHHHCCSEEEEECCHHHHHHHHHHHHHTTCCSE---EEECGGGCSHH
T ss_pred HHHHHHHcCCEEEEEeecC--CCCCCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCcc---EEeccCcCcHH
Confidence 9999999999988777676 345678888999998899999998878889999999999998765 45554433211
Q ss_pred ccCCCCCCCccccceeeEEEeee----------cCCchhHHHHHHHHHhhccCCCCCCCCCCChhHHHHhhHHHHHHHHH
Q 003958 264 DTNSPFPSDVMDDIQGVLTLRTY----------TPDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAI 333 (784)
Q Consensus 264 ~~~~~~~~~~~~~~~g~~~~~~~----------~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~~a~Al 333 (784)
.. .......+|++....+ .+..+..++|.++|+++++. ..++.++..+|||++++++|+
T Consensus 230 ~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~------~~p~~~~~~~yda~~~~~~al 298 (362)
T 3snr_A 230 FI-----RIAGKSAEGVLMASGPVMDPEGQDDTALTKKPGMALVKVYEEKYGP------SSRSQFAGHSYDAFKVLERVV 298 (362)
T ss_dssp HH-----HHHGGGGTTCEEEECGGGCSTTSCTTCTTHHHHHHHHHHHHHHHCT------TCCCHHHHHHHHHHHHHHHHH
T ss_pred HH-----HHhHHHhCCCEEecccccccccCCCcCcccHHHHHHHHHHHHHhCC------CCCCchhHhHHHHHHHHHHHH
Confidence 10 1122456777665431 12345789999999999872 246788999999999999999
Q ss_pred HHHhhcCCccccccCCccccccCCcccccccccCCchHHHHHHHhc-cccceeeeEEEecCCCC--cCCcEEEEEeeccc
Q 003958 334 NSFFKQGGNLSFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQA-NMTGTAGPARFNSHGDL--INPAYEIINVIGTG 410 (784)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~-~f~g~tG~v~Fd~~g~~--~~~~~~I~~~~~~~ 410 (784)
+++.+.... +.+.++..|.++|+++ +|+|++|+++|++++++ ....+.|+++++++
T Consensus 299 ~~a~~~~~~---------------------g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G~ 357 (362)
T 3snr_A 299 PVALKKAKP---------------------GTQEFREALREAFLTEKDIAASQGVYNFTETDRYGLDDRSRILLTVKNGK 357 (362)
T ss_dssp HHHHHHCCT---------------------TSHHHHHHHHHHHHHCCCEECSSCEECCCSSCSSCCCGGGCEEEEEETTE
T ss_pred HHhhccccC---------------------CCcchHHHHHHHHHhcCCcccceeeEEeCCCCCCCCCCCCeEEEEEECCE
Confidence 998544210 0122478899999999 89999999999987443 35668999999988
Q ss_pred eEEE
Q 003958 411 YRRI 414 (784)
Q Consensus 411 ~~~V 414 (784)
++.|
T Consensus 358 ~~~v 361 (362)
T 3snr_A 358 YVIV 361 (362)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 8754
No 36
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=99.94 E-value=1e-26 Score=242.14 Aligned_cols=307 Identities=12% Similarity=0.083 Sum_probs=239.5
Q ss_pred EEEEEeecC---CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCchhhH
Q 003958 33 NIGALLSFS---TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVTS 109 (784)
Q Consensus 33 ~IG~i~~~~---~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s~~~ 109 (784)
+||+++|+| +..|...+.|+++|. .|++++++++|+.+++ +...+.++++++|.+||||.+|..+
T Consensus 2 kIG~llplSG~~a~~G~~~~~G~~lA~----------~G~~i~l~~~D~~~~~--a~~~~~~l~~~~v~~IiGp~~s~~~ 69 (325)
T 2h4a_A 2 QIGLLLPLSGDGQILGTTIQSGFNDAK----------GNSTIPVQVFDTSMNS--VQDIIAQAKQAGIKTLVGPLLKQNL 69 (325)
T ss_dssp CEEEEECCSSTTHHHHHHHHHHHHHHH----------TTCCSCEEEEETTTSC--HHHHHHHHHHTTCCEEECCCSHHHH
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHhc----------cCCCceEEEEECCCCh--HHHHHHHHHHCCCCEEEeeCCHHHH
Confidence 699999999 456888999999986 2788999999999987 5667788888899999999999999
Q ss_pred HHHHHhh-hcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCCCcchhHHHHHHHH
Q 003958 110 HVVSHVA-NELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTL 188 (784)
Q Consensus 110 ~~va~~~-~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l 188 (784)
.++++.+ ...++|+|++.+++. .....+.|+||+.| ..++.++++++.+.|.+++++|+.+++||+...+.|++.+
T Consensus 70 ~a~~~~~~~~~~vp~i~~~~~~~-~~~~~~~~~f~~~~--~~~~~~~a~~a~~~g~k~vail~~~~~yG~~~~~~F~~~~ 146 (325)
T 2h4a_A 70 DVILADPAQIQGMDVLALNATPN-SRAIPQLCYYGLSP--EDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVRW 146 (325)
T ss_dssp HHHHHCGGGGTTCEEEESCCCSS-CCCCTTEEECCCCH--HHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHhhhhccCCCcEEECCCCcc-ccCCCCeEEEECCH--HHHHHHHHHHHHHcCCCeEEEEEcCCcHHHHHHHHHHHHH
Confidence 9999998 789999999866542 22223456666554 5568999999988899999999999999999999999999
Q ss_pred hccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEEecCccc--cccccC
Q 003958 189 AAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLS--TALDTN 266 (784)
Q Consensus 189 ~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~--~~~~~~ 266 (784)
++.|++|+..+.+.. . .|+..++++++ .++|+|++.+...++..+.++++..+...+ .+.++.+. .....
T Consensus 147 ~~~Gg~vv~~~~y~~--~-~d~~~~l~~i~-~~pDaV~~~~~~~~~~~i~~~~~~~g~~~p---l~~~~~~~~~s~~~~- 218 (325)
T 2h4a_A 147 QQLAGTDANIRYYNL--P-ADVTYFVQENN-SNTTALYAVASPTELAEXKGYLTNIVPNLA---IYASSRASASATNTN- 218 (325)
T ss_dssp HHHHSSCCEEEEESS--T-THHHHHHHHST-TCCCEEEECCCHHHHHHHHHHHTTTCTTCE---EEECGGGCCHHHHTC-
T ss_pred HHcCCCcceeEecCC--H-HHHHHHHHhcC-CCCCEEEEeCCHHHHhhhhhhHhhcCCCCC---EEEeccccccCCCCC-
Confidence 999999998888873 3 69999999994 789999999888888888888887665443 67776665 22111
Q ss_pred CCCCCCccccceeeEEEe-ee--cCCchhHHHHHHHHHhhccCCCCCCCCCCChhHHHHhhHHHHHHHHHHHHhhcCCcc
Q 003958 267 SPFPSDVMDDIQGVLTLR-TY--TPDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAINSFFKQGGNL 343 (784)
Q Consensus 267 ~~~~~~~~~~~~g~~~~~-~~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~~a~Al~~~~~~~~~~ 343 (784)
......++|++... ++ .++.+.+++|.+.|+..+ .+....+.+|||+.++.++ .++.
T Consensus 219 ----~~~~~~~~Gv~f~~~p~~~~~~~~~~~~f~~~~~~~~---------~~~rl~AlgyDA~~l~~~l-~~l~------ 278 (325)
T 2h4a_A 219 ----TDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEY---------QLMRLYAMGADAWLLINQF-NELR------ 278 (325)
T ss_dssp ----HHHHHHTTTCEEEECGGGSCCCSHHHHHHHHHTTTCH---------HHHHHHHHHHHHHHHHHTH-HHHH------
T ss_pred ----chhhhhcCCcEEEccccccCCCcHHHHHHHhccCCCc---------chHHHHHHHHHHHHHHHHH-HHHh------
Confidence 12235678876654 33 345677888887765432 2356679999999986553 3321
Q ss_pred ccccCCccccccCCcccccccccCCchHHHHHHHhccccceeeeEEEecCCCCcCCcEEEEEeeccceEEE
Q 003958 344 SFSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVIGTGYRRI 414 (784)
Q Consensus 344 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~g~~~~~~~~I~~~~~~~~~~V 414 (784)
.+.+..|+|++|.++||++|+ ....+.+.++++++++.|
T Consensus 279 -------------------------------~~~~~~~~G~tG~l~~~~~g~-~~R~l~~~~~~~G~~~~~ 317 (325)
T 2h4a_A 279 -------------------------------QVPGYRLSGLTGILSADTNCN-VERDMTWYQYQDGAIVPV 317 (325)
T ss_dssp -------------------------------HSTTCCEEETTEEEEECTTCB-EEEECEEEEEETTEEEEC
T ss_pred -------------------------------hCCCCeeccCceeEEECCCCe-EEEeechhhccCCeEEEe
Confidence 122357999999999999998 477789999999888765
No 37
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=99.94 E-value=1.2e-26 Score=244.78 Aligned_cols=312 Identities=12% Similarity=0.053 Sum_probs=236.2
Q ss_pred EEEEEEeecC---CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCchhh
Q 003958 32 VNIGALLSFS---TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVT 108 (784)
Q Consensus 32 i~IG~i~~~~---~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s~~ 108 (784)
+|||+++|+| +..|...+.|+++|++ |++++++++|+++++..++ ...+.+++|.+||||.+|+.
T Consensus 3 ~kIG~l~PlSG~~a~~G~~~~~g~~lA~~----------g~~i~l~~~D~~~~~~~aa--~~~~~~~~v~~iiGp~~s~~ 70 (327)
T 3ckm_A 3 SQIGLLLPLSGDGQILGTTIQSGFNDAKG----------NSTIPVQVFDTSMNSVQDI--IAQAKQAGIKTLVGPLLKQN 70 (327)
T ss_dssp CCEEEEECCSSTTHHHHHHHHHHHHHHHT----------TCCSCEEEEETTTSCHHHH--HHHHHHTTCCEEECCCSHHH
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHhCC----------CCCceEEEEeCCCCHHHHH--HHHHHHcCCeEEEEcccccc
Confidence 6899999998 4558888999999863 5678899999999997663 44556679999999999988
Q ss_pred HHHHHHhh-hcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCCCcchhHHHHHHH
Q 003958 109 SHVVSHVA-NELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDT 187 (784)
Q Consensus 109 ~~~va~~~-~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~ 187 (784)
+.+++... ....+|+++.++++. . ...|++||+.+++..++.++++++...+++++++|+.+++||+...+.+++.
T Consensus 71 ~~a~~~~~~~~~~v~~~~~~~~~~-~--~~~~~~f~~~~~~~~~~~~~a~~~~~~g~k~~~ii~~~~~yg~~~~~~f~~~ 147 (327)
T 3ckm_A 71 LDVILADPAQIQGMDVLALNATPN-S--RAIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVR 147 (327)
T ss_dssp HHHHHHCGGGGTTCEEEESCCCTT-C--CCCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHH
T ss_pred chhhHHHHHhccCceEeccCcCcc-c--ccCCCeEEEecChHHHHHHHHHHHHhcCCeeEEEEecCChHHHHHHHHHHHH
Confidence 87766654 555666666444332 2 2358999999999999999999999999999999999999999999999999
Q ss_pred HhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEEecCccccccccCC
Q 003958 188 LAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIATSWLSTALDTNS 267 (784)
Q Consensus 188 l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~ 267 (784)
+++.|++|+..+.++. . +....+.+++..++|+|++.....++..+++++++.|+..+ ++.++.+........
T Consensus 148 ~~~~Gg~vv~~~~~~~--~--~~~~~~~~~~~~~~dai~~~~~~~~~~~i~~q~~~~g~~~~---~~~~~~~~~~~~~~~ 220 (327)
T 3ckm_A 148 WQQLAGTDANIRYYNL--P--ADVTYFVQENNSNTTALYAVASPTELAEMKGYLTNIVPNLA---IYASSRASASATNTN 220 (327)
T ss_dssp HHHHHSSCCEEEEESS--T--THHHHHHHHSCTTCCEEEECCCHHHHHHHHHHHTTTCTTCE---EEECGGGCCHHHHTC
T ss_pred HHHCCCeEEEEEECCC--C--chhhHHHHHhccCCcEEEEEcCHHHHHHHHHHHHhhhccCC---EEeeeccccccchhc
Confidence 9999999998888863 2 23356778888999999999999999999999999887654 666654332211100
Q ss_pred CCCCCccccceeeEEEee---ecCCchhHHHHHHHHHhhccCCCCCCCCCCChhHHHHhhHHHHHHHHHHHHhhcCCccc
Q 003958 268 PFPSDVMDDIQGVLTLRT---YTPDSVLKRKFISRWRNLTDAKTPNGYIGLNAYGFYAYDTVWLLARAINSFFKQGGNLS 344 (784)
Q Consensus 268 ~~~~~~~~~~~g~~~~~~---~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~YDAv~~~a~Al~~~~~~~~~~~ 344 (784)
.......+|++.... ..++.+.+++|.++|+..++ ...+.+.+|||+.+++++.+..
T Consensus 221 ---~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~---------~~~~~AlgyDA~~l~~~l~~~~-------- 280 (327)
T 3ckm_A 221 ---TDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEYQ---------LMRLYAMGADAWLLINQFNELR-------- 280 (327)
T ss_dssp ---HHHHHHTTTCEEEECGGGGCCCSHHHHHHHHHTTTCHH---------HHHHHHHHHHHHHHHHTHHHHH--------
T ss_pred ---chhhhhcCCeEEEcccccCCCCCHHHHHHHHHHHhhcC---------CCchHHHHHHHHHHHHHHHHhc--------
Confidence 111123456554432 23567788888888877664 1346778999998776544321
Q ss_pred cccCCccccccCCcccccccccCCchHHHHHHHhccccceeeeEEEecCCCCcCCcEEEEEeeccceEEEEE
Q 003958 345 FSKDSRLSDIQGHLRLDSLRIFNGGNLLRDSILQANMTGTAGPARFNSHGDLINPAYEIINVIGTGYRRIGY 416 (784)
Q Consensus 345 ~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~~f~g~tG~v~Fd~~g~~~~~~~~I~~~~~~~~~~VG~ 416 (784)
.+....|+|++|.++||++|+ ....+.+.++++|++++|..
T Consensus 281 ------------------------------~~~~~~f~G~tG~i~fd~~G~-~~r~l~~~~~~~G~~vpv~d 321 (327)
T 3ckm_A 281 ------------------------------QVPGYRLSGLTGILSADTNCN-VERDMTWYQYQDGAIVPVVD 321 (327)
T ss_dssp ------------------------------HSTTCCEEETTEEEEECTTCB-EEEECEEEEEETTEEEECC-
T ss_pred ------------------------------CCCCCCceeceEEEEECCCCC-CccccEEEEEECCEEEEccc
Confidence 122346999999999999997 57778899999999988853
No 38
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.85 E-value=2.6e-21 Score=202.59 Aligned_cols=227 Identities=21% Similarity=0.359 Sum_probs=163.8
Q ss_pred CCccEEEEecCCCccceeEeeC-------CCcceeeeeHHHHHHHHHHCCCccceEEeeC---CCCCC-CCChhHHHHHH
Q 003958 466 NGRHLRIGVPNRVSFREFVSVK-------GSEMTSGFCIDVFTAAINLLPYAVPYKLIPF---GDGHN-NPSCTELVRLI 534 (784)
Q Consensus 466 ~~~~l~v~~~~~~~~~~~~~~~-------~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~---~~~~~-~~~~~g~i~~l 534 (784)
.+++|+|++..++|| .+.+ +++++.|+++||++++++++|+++++...+. +.... +..|++++..|
T Consensus 11 ~~~~l~V~~~~~~P~---~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l 87 (312)
T 1yae_A 11 SNRSLIVTTILEEPY---VLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVREL 87 (312)
T ss_dssp CSCEEEEEECCBTTT---BEECCCSSCCCGGGGEESHHHHHHHHHHHHHCCEEEEEECSSCCCCCBCTTTCCBCSHHHHH
T ss_pred cCceEEEEEeccCCe---eEEeccccccCCCceEEEEEHHHHHHHHHHcCCeEEEEecCCCccceeccCCCcchHHHHHH
Confidence 457899999876554 4333 5788999999999999999999955554432 11111 56899999999
Q ss_pred HcCcccEEEeeEEeecCccccceeccccccccEEEEEeccC-CccccccccccccHHHHHHHHHHHHHHHHHhhheeccc
Q 003958 535 TAGVYDAAVGDIAIITNRTKMADFTQPYIESGLVVVAPVRK-LDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRL 613 (784)
Q Consensus 535 ~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~-~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~~~~ 613 (784)
.+|++|++++++++|++|.+.++||.||+..+.+++++++. ....++.|+.||+.
T Consensus 88 ~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~pf~~------------------------ 143 (312)
T 1yae_A 88 IDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNGGSL------------------------ 143 (312)
T ss_dssp HTTSCSEECSSCBCCHHHHHHEEEEEEEEEECEEEEEEC-----------------------------------------
T ss_pred hCCCcCEEeecceechhhcceEEecceeeecceEEEEeCCccccccceeeeccccc------------------------
Confidence 99999999999999999999999999999999999999887 57889999999990
Q ss_pred CCCCCCCccCCceeehhhhhhhhhcccccccccchhhHHHHHHHHHHHHHHhhccccceeeEeeccccCCCCChHhhhhC
Q 003958 614 NDEFRGPPKRQVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSS 693 (784)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~~~i~~~~dl~~~ 693 (784)
.|+ |++++...|++++||...
T Consensus 144 -----------------------------~p~------------------------------tv~~~~~~i~~~~dL~g~ 164 (312)
T 1yae_A 144 -----------------------------VPR------------------------------GSERMESPIDSADDLAKQ 164 (312)
T ss_dssp ----------------------------------------------------------------------CCSHHHHHTC
T ss_pred -----------------------------CCc------------------------------ccccccCCCCCHHHHhhc
Confidence 111 335556789999999943
Q ss_pred -CCceEEeeCchHHHHHHhhcccC-----------ccCceeCCCHHHHHHHHhcCCcCCCeeEEEechhhhHHHHcCCCC
Q 003958 694 -NYPIGYQVNSFARNYLVDELNID-----------ESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCE 761 (784)
Q Consensus 694 -~~~i~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~c~ 761 (784)
+.+||+..+++...++.+. ..+ ..++..+.+.++++++|++ |+ ||++.+...+.|+++++|+
T Consensus 165 ~~~~vg~v~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----G~-Da~i~~~~~~~~~~~~~~~ 238 (312)
T 1yae_A 165 TKIEYGAVEDGATMTFFKKS-KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLT----SD-YAFLMESTTIEFVTQRNCN 238 (312)
T ss_dssp SSSEEECBTTSHHHHHHHHC-CBHHHHHHHHHHHHTHHHHCBSSHHHHHHHHHH----SS-EEEEEEHHHHHHHHTTCTT
T ss_pred cCceEEEEeCChHHHHHHhc-cCchHHHHHHHHHhcCCCcccCCHHHHHHHHHc----CC-cEEEeccHHHHHHHhcCCC
Confidence 2269987766677777542 111 1245668899999999999 78 9999999999999999999
Q ss_pred eEEeCCccccceEEEEeeCCCCC
Q 003958 762 FSIVGQVFTKNGWGFVSIVSSFY 784 (784)
Q Consensus 762 l~~~~~~~~~~~~~~~~~k~s~~ 784 (784)
+.+++..+...+++++++|++|+
T Consensus 239 l~~~~~~~~~~~~~~a~~k~~~l 261 (312)
T 1yae_A 239 LTQIGGLIDSKGYGVGTPMGSPY 261 (312)
T ss_dssp EEEESSCSSCEEEEEEEETTCSS
T ss_pred EEEecccccccceEEEEeCCCCc
Confidence 99999888889999999999874
No 39
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.82 E-value=1.6e-20 Score=194.21 Aligned_cols=204 Identities=20% Similarity=0.308 Sum_probs=158.9
Q ss_pred ccEEEEecCCCccceeEeeCCCcceeeeeHHHHHHHHHHCCCccceEEeeCC-CCC---CC----CChhHHHHHHHcCcc
Q 003958 468 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFG-DGH---NN----PSCTELVRLITAGVY 539 (784)
Q Consensus 468 ~~l~v~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~-~~~---~~----~~~~g~i~~l~~~~~ 539 (784)
+.|++++.. .|+|+.+.+.++++.||++||+++|++++|+++++..++.+ .|. .| +.|++++++|.+|++
T Consensus 41 ~~l~vg~~~--~~~P~~~~~~~g~~~G~~vDll~~ia~~lg~~~~~~~~~d~~~g~~~~~~~~~~~~w~~~~~~l~~g~~ 118 (292)
T 1pb7_A 41 KVICTGPND--TSPGSPRHTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQA 118 (292)
T ss_dssp CEEEEEEC----------CEEEEEEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCEEECTTSSCEEECHHHHHHHHTSC
T ss_pred ceeecccCC--CCCCccccccccCcceeHHHHHHHHHHHcCceEEEEEecCCcccccccccccccCcHHHHHHHHHcCCc
Confidence 466766653 36666655557899999999999999999999554443221 111 12 479999999999999
Q ss_pred cEEEeeEEeecCccccceeccccccccEEEEEeccCCccccccccccccHHHHHHHHHHHHHHHHHhhheecccCCCCCC
Q 003958 540 DAAVGDIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRG 619 (784)
Q Consensus 540 D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~~~~~~~~~~ 619 (784)
|++++++++|++|.+.++||.||+..++.++++++.
T Consensus 119 D~~~~~~~~t~~R~~~~~fs~Py~~~~~~i~~~~~~-------------------------------------------- 154 (292)
T 1pb7_A 119 DMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGT-------------------------------------------- 154 (292)
T ss_dssp SEECSSCBCCHHHHTTEEECSCSEEEEEEEEEETTC--------------------------------------------
T ss_pred CEEEeeeEecHHHhcceEechhhHhcCeEEEEECCc--------------------------------------------
Confidence 999999999999999999999999999999998764
Q ss_pred CccCCceeehhhhhhhhhcccccccccchhhHHHHHHHHHHHHHHhhccccceeeEeeccccCCCCChHhhhhCCC---c
Q 003958 620 PPKRQVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNY---P 696 (784)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~~~i~~~~dl~~~~~---~ 696 (784)
+|.+++||...+. .
T Consensus 155 ---------------------------------------------------------------~i~~~~dl~~~g~~~~~ 171 (292)
T 1pb7_A 155 ---------------------------------------------------------------RITGINDPRLRNPSDKF 171 (292)
T ss_dssp ---------------------------------------------------------------CCCSTTCHHHHSCBTTB
T ss_pred ---------------------------------------------------------------CCCCCcCccccCcccce
Confidence 4667778764332 3
Q ss_pred -eEEeeCchHHHHHHhhccc----CccCceeCCCHHHHHHHHhcCCcCCCeeEEEechhhhHHHHcCCCCeEEeCCcccc
Q 003958 697 -IGYQVNSFARNYLVDELNI----DESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVGQVFTK 771 (784)
Q Consensus 697 -i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~c~l~~~~~~~~~ 771 (784)
+|+..+++.+.++++.... +..++..+.+.++++++|++ +++||++.+...++|+++++|++.+++..+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----G~vDa~i~d~~~~~~~~~~~~~l~~~~~~~~~ 247 (292)
T 1pb7_A 172 IYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRD----NKLHAFIWDSAVLEFEASQKCDLVTTGELFFR 247 (292)
T ss_dssp CEECBTTSHHHHHHHTCGGGHHHHHHHTTTCBSSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHHCTTEEECSSCSEE
T ss_pred EEEEEcCchHHHHhhhcccHHHHHHHHHhhcCCCHHHHHHHHHc----CCceEEEEcHHHHHHHHhcCCCEEEcCccccC
Confidence 6888888888888542211 11245567899999999999 89999999999999999999999999998999
Q ss_pred ceEEEEeeCCCCC
Q 003958 772 NGWGFVSIVSSFY 784 (784)
Q Consensus 772 ~~~~~~~~k~s~~ 784 (784)
.+|+++++|++|+
T Consensus 248 ~~~~ia~~k~~~l 260 (292)
T 1pb7_A 248 SGFGIGMRKDSPW 260 (292)
T ss_dssp EEECCEEETTCSS
T ss_pred CceEEEEeCCCHH
Confidence 9999999999874
No 40
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.81 E-value=7.7e-20 Score=188.42 Aligned_cols=208 Identities=20% Similarity=0.353 Sum_probs=159.4
Q ss_pred cCCCccEEEEecCCCccceeEeeC----CCcceeeeeHHHHHHHHHHCCCccceEEeeCCCCC----CCCChhHHHHHHH
Q 003958 464 PNNGRHLRIGVPNRVSFREFVSVK----GSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGH----NNPSCTELVRLIT 535 (784)
Q Consensus 464 ~~~~~~l~v~~~~~~~~~~~~~~~----~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~----~~~~~~g~i~~l~ 535 (784)
|.+|++|||+++..++|+++.... +.+++.|+++|+++++++++|++ ++++.+.++. .+++|++++++|.
T Consensus 25 ~~~~~~lrvgv~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~i~~~lg~~--~~~~~~~~~~~g~~~~~~~~~~~~~l~ 102 (284)
T 2a5s_A 25 PLTETCVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFT--YDLYLVTNGKHGKKVNNVWNGMIGEVV 102 (284)
T ss_dssp CC-CCCCTTCEEEEEEEESSSSSSCEEEEEEEEESHHHHHHHHHHHHHTCC--EEEEECCSSSSCCEETTEECHHHHHHH
T ss_pred CCCCccccccccccccccccccccCCCCCcceeeEEhHHHHHHHHHHCCCC--EEEEEccCCccCcccCCCHHHHHHHHh
Confidence 456788888888776666553311 12478999999999999999999 4444443221 3568999999999
Q ss_pred cCcccEEEeeEEeecCccccceeccccccccEEEEEeccCCccccccccccccHHHHHHHHHHHHHHHHHhhheecccCC
Q 003958 536 AGVYDAAVGDIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLND 615 (784)
Q Consensus 536 ~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~~~~~~ 615 (784)
+|++|++++++++|++|.+.++||.||+.++..++++++.
T Consensus 103 ~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~---------------------------------------- 142 (284)
T 2a5s_A 103 YQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRGT---------------------------------------- 142 (284)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECCCCEEECEEEEEETTC----------------------------------------
T ss_pred cCCcCEEEEEEEEeccccceEEeccCchhcCEEEEEECCc----------------------------------------
Confidence 9999999999999999999999999999999999998764
Q ss_pred CCCCCccCCceeehhhhhhhhhcccccccccchhhHHHHHHHHHHHHHHhhccccceeeEeeccccCCCCChHhhhhC--
Q 003958 616 EFRGPPKRQVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSS-- 693 (784)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~~~i~~~~dl~~~-- 693 (784)
++++++||..+
T Consensus 143 -------------------------------------------------------------------~~~~~~dl~~~~~ 155 (284)
T 2a5s_A 143 -------------------------------------------------------------------QVTGLSDKKFQRP 155 (284)
T ss_dssp -------------------------------------------------------------------CCCSTTSHHHHSG
T ss_pred -------------------------------------------------------------------ccccccccccCCh
Confidence 34444454422
Q ss_pred -----CCceEEeeCchHHHHHHhhcccCccCceeC--CCHHHHHHHHhcCCcCCCeeEEEechhhhHHHHcCC--CCeEE
Q 003958 694 -----NYPIGYQVNSFARNYLVDELNIDESRLVPL--NSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTR--CEFSI 764 (784)
Q Consensus 694 -----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~--c~l~~ 764 (784)
+.+||+..+++...++.+........+..+ .+.++++++|++ |++||++.+...+.|++++. |++..
T Consensus 156 ~~l~~~~~vg~v~~~s~~~~l~~~~~~~~~~i~~~~~~~~~~~l~~l~~----G~vDa~i~d~~~~~~~~~~~~~~~l~~ 231 (284)
T 2a5s_A 156 HDYSPPFRFGTVPNGSTERNIRNNYPYMHQYMTRFNQRGVEDALVSLKT----GKLDAFIYDAAVLNYKAGRDEGCKLVT 231 (284)
T ss_dssp GGSSSCCCEECCTTSHHHHHHHTTCHHHHHHHGGGCCSSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHTCTTSCEEE
T ss_pred hHcCCCceEEEEeCCchHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHc----CCeeEEEEchHHHHHHHhcCCCCCEEE
Confidence 567998765556666643211101134555 789999999999 89999999999999998874 89988
Q ss_pred eC--CccccceEEEEeeCCCCC
Q 003958 765 VG--QVFTKNGWGFVSIVSSFY 784 (784)
Q Consensus 765 ~~--~~~~~~~~~~~~~k~s~~ 784 (784)
++ ..+...+|+|+++|++++
T Consensus 232 ~~~~~~~~~~~~~~a~~k~~~l 253 (284)
T 2a5s_A 232 IGSGYIFATTGYGIALQKGSPW 253 (284)
T ss_dssp EECCCGGGCEEECCEEETTCTT
T ss_pred eCCccccccCceEEEecCCCHH
Confidence 85 577888999999999874
No 41
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=99.81 E-value=1.6e-19 Score=183.50 Aligned_cols=204 Identities=21% Similarity=0.340 Sum_probs=165.0
Q ss_pred CccEEEEecCCCccceeEee----CCCcceeeeeHHHHHHHHHHCCCccceEEeeCCC-CC---CCCChhHHHHHHHcCc
Q 003958 467 GRHLRIGVPNRVSFREFVSV----KGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGD-GH---NNPSCTELVRLITAGV 538 (784)
Q Consensus 467 ~~~l~v~~~~~~~~~~~~~~----~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~-~~---~~~~~~g~i~~l~~~~ 538 (784)
+++|+|++...+||...... ++++++.||++||++++++++|+++++..++.+. +. .+.+|.+++..|.+|+
T Consensus 3 ~~~l~v~~~~~~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~p~~~~g~~~~~~~~~~~~~~~l~~g~ 82 (259)
T 3g3k_A 3 NRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHK 82 (259)
T ss_dssp CCCEEEEECCBTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHHTTS
T ss_pred CcEEEEEEecCCCeEEEeecccccCCCceeeeEHHHHHHHHHHHcCCeEEEEECCCCCcCcccCCCCcchHHHHHHhcCc
Confidence 57899999877555432211 1268999999999999999999996666554321 11 1468999999999999
Q ss_pred ccEEEeeEEeecCccccceeccccccccEEEEEeccCCccccccccccccHHHHHHHHHHHHHHHHHhhheecccCCCCC
Q 003958 539 YDAAVGDIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFR 618 (784)
Q Consensus 539 ~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~~~~~~~~~ 618 (784)
+|++++++++|++|.+.++||.||+..+..+++++..
T Consensus 83 ~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~------------------------------------------- 119 (259)
T 3g3k_A 83 ADLAVAPLAITYVREEVIDFSKPFMTLGISILYRKGT------------------------------------------- 119 (259)
T ss_dssp CSEECSSCBCCHHHHTTEEECSCSEEECEEEEEESSS-------------------------------------------
T ss_pred ccEEEeeeEecccccceEeeeeeeeeCCEEEEEeCCc-------------------------------------------
Confidence 9999999999999999999999999999999998764
Q ss_pred CCccCCceeehhhhhhhhhcccccccccchhhHHHHHHHHHHHHHHhhccccceeeEeeccccCCCCChHhhhhCC-Cce
Q 003958 619 GPPKRQVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSN-YPI 697 (784)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~~~i~~~~dl~~~~-~~i 697 (784)
+|++++||.... .++
T Consensus 120 ----------------------------------------------------------------~i~~~~dL~g~~~~~i 135 (259)
T 3g3k_A 120 ----------------------------------------------------------------PIDSADDLAKQTKIEY 135 (259)
T ss_dssp ----------------------------------------------------------------SCCSHHHHHTCSSSEE
T ss_pred ----------------------------------------------------------------cccCHHHhccCCCceE
Confidence 588999999432 238
Q ss_pred EEeeCchHHHHHHhhcccC-----------ccCceeCCCHHHHHHHHhcCCcCCCeeEEEechhhhHHHHcCCCCeEEeC
Q 003958 698 GYQVNSFARNYLVDELNID-----------ESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVG 766 (784)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~c~l~~~~ 766 (784)
|+..+++...++.+. ... ...+..+.+.++++++|.+ |+ +|++.+...+.|++++.|++.+++
T Consensus 136 g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----g~-da~i~~~~~~~~~~~~~~~l~~~~ 209 (259)
T 3g3k_A 136 GAVEDGATMTFFKRS-KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLT----SD-YAFLMESTTIEFVTQRNCNLTQIG 209 (259)
T ss_dssp EEETTSHHHHHHHHC-CSHHHHHHHHHHHHTHHHHEESSHHHHHHHHHH----SS-EEEEEEHHHHHHHHHHCTTEEEES
T ss_pred EEecCcHHHHHHhhc-cchhHHHHHHHHHhcCCCcccCCHHHHHHHHHh----CC-eEEEechHHHHHHhcCCceEEEec
Confidence 888888788887542 211 1133567899999999999 77 999999999999998899999999
Q ss_pred CccccceEEEEeeCCCC
Q 003958 767 QVFTKNGWGFVSIVSSF 783 (784)
Q Consensus 767 ~~~~~~~~~~~~~k~s~ 783 (784)
..+...+++++++|++|
T Consensus 210 ~~~~~~~~~~a~~k~~~ 226 (259)
T 3g3k_A 210 GLIDSKGYGVGTPMGSP 226 (259)
T ss_dssp SCSSCEEECCEEETTCT
T ss_pred ccceeeeEEEEECCCCc
Confidence 99999999999999987
No 42
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.80 E-value=1.1e-19 Score=188.26 Aligned_cols=184 Identities=24% Similarity=0.382 Sum_probs=150.7
Q ss_pred ceeeeeHHHHHHHHHHCCCccceEEeeCCCCC----CCCChhHHHHHHHcCcccEEEeeEEeecCccccceecccccccc
Q 003958 491 MTSGFCIDVFTAAINLLPYAVPYKLIPFGDGH----NNPSCTELVRLITAGVYDAAVGDIAIITNRTKMADFTQPYIESG 566 (784)
Q Consensus 491 ~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~----~~~~~~g~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~ 566 (784)
++.||++||++++++++|+++++. .+.+++ .++.|++++++|.+|++|++++++++|++|.+.++||.||+..+
T Consensus 67 ~~~G~~vdll~~ia~~lg~~~~~~--~~~~~~~g~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~eR~~~~~fs~P~~~~~ 144 (294)
T 2rc8_A 67 CCYGYCIDLLEQLAEDMNFDFDLY--IVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTS 144 (294)
T ss_dssp EEESHHHHHHHHHHHHHTEEEEEE--ECTTCCCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHHTTSEECSCSEEEE
T ss_pred CceEEhHHHHHHHHHHcCCcEEEE--ECCCCcccccCCCCHHHHHHHHHCCCcCEEEeccccCHhHhceEEEccchHhcc
Confidence 589999999999999999995444 433221 34679999999999999999999999999999999999999999
Q ss_pred EEEEEeccCCccccccccccccHHHHHHHHHHHHHHHHHhhheecccCCCCCCCccCCceeehhhhhhhhhccccccccc
Q 003958 567 LVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVVTIFWFSFSTMFFAHKEKTVS 646 (784)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 646 (784)
..++++++.
T Consensus 145 ~~i~~~~~~----------------------------------------------------------------------- 153 (294)
T 2rc8_A 145 LGILVRTRG----------------------------------------------------------------------- 153 (294)
T ss_dssp EEEEEETTS-----------------------------------------------------------------------
T ss_pred eEEEEECCC-----------------------------------------------------------------------
Confidence 999998763
Q ss_pred chhhHHHHHHHHHHHHHHhhccccceeeEeeccccCCCCChHhhh----hCCCceEEeeCchHHHHHHhhcccCc--cCc
Q 003958 647 ALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLR----SSNYPIGYQVNSFARNYLVDELNIDE--SRL 720 (784)
Q Consensus 647 ~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~~~i~~~~dl~----~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~ 720 (784)
..|++++||. .++.++|+..|+..+.++++...... -+.
T Consensus 154 -----------------------------------~~i~~~~dL~~~~~~~g~~vg~~~gs~~~~~l~~~~~~~~~~i~~ 198 (294)
T 2rc8_A 154 -----------------------------------TELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQSFPEMHEYMRR 198 (294)
T ss_dssp -----------------------------------CCCCSTTCHHHHSCCTTCCEECBTTSHHHHHHHHHCHHHHHHHGG
T ss_pred -----------------------------------CCcCChhhhhhcCcccCeEEEEEcCChHHHHHHHHHHHHHHHHHH
Confidence 2577888887 24778999999999999865321100 122
Q ss_pred eeCCCHHHHHHHHhcCCcCCCeeEEEechhhhHHHHcC--CCCeEEeCCccccceEEEEeeCCCCC
Q 003958 721 VPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLST--RCEFSIVGQVFTKNGWGFVSIVSSFY 784 (784)
Q Consensus 721 ~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~--~c~l~~~~~~~~~~~~~~~~~k~s~~ 784 (784)
+.+.+.++++++|+++ .+++||++.+...+.|++++ .|++.+++..+...+|+|+++|++|+
T Consensus 199 ~~~~~~~~~~~~l~~~--~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~k~~~l 262 (294)
T 2rc8_A 199 YNVPATPDGVQYLKND--PEKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPL 262 (294)
T ss_dssp GCBSSHHHHHHHHHSS--SCCCSEEEEEHHHHHHHHHTCSSSCEEECSCCEEEEEECCEECTTCTH
T ss_pred hcCCCHHHHHHHHHhc--cCceeEEEecHHHHHHHHhhCCCCCEEEcCCcccccceEEEecCCCHH
Confidence 3578899999999872 24789999999999999876 58999999989899999999999873
No 43
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=99.78 E-value=7.9e-19 Score=176.49 Aligned_cols=192 Identities=19% Similarity=0.259 Sum_probs=161.4
Q ss_pred ccEEEEecCCCccceeEe---eCCCcceeeeeHHHHHHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEe
Q 003958 468 RHLRIGVPNRVSFREFVS---VKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVG 544 (784)
Q Consensus 468 ~~l~v~~~~~~~~~~~~~---~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~ 544 (784)
+.|+|++.. .|+||.+ .++++++.||++||++++++++|++ ++++.. .|..++..|.+|++|++++
T Consensus 12 g~L~Vg~~~--~~pP~~~~~~~d~~g~~~G~~vdl~~~ia~~lg~~--~~~~~~-------~~~~~~~~l~~g~~d~~~~ 80 (243)
T 4h5g_A 12 GKLVVATSP--DYAPFEFQSLVDGKNQVVGADIDMAQAIADELGVK--LEILSM-------SFDNVLTSLQTGKADLAVA 80 (243)
T ss_dssp TEEEEEECC--CBTTTBEEEEETTEEEEESHHHHHHHHHHHHHTSE--EEEEEC-------CGGGHHHHHHTTSCSEECS
T ss_pred CEEEEEECC--CCCCcEeeeccCCCCcEEEeHHHHHHHHHHHhCCc--eEEecc-------cHHHHHHHHHcCCCCcccc
Confidence 568888854 3666655 4678999999999999999999988 555543 5999999999999999999
Q ss_pred eEEeecCccccceeccccccccEEEEEeccCCccccccccccccHHHHHHHHHHHHHHHHHhhheecccCCCCCCCccCC
Q 003958 545 DIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQ 624 (784)
Q Consensus 545 ~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (784)
++++|++|.+.++||.||+..+.++++++..
T Consensus 81 ~~~~t~eR~~~~~fs~py~~~~~~~~v~~~~------------------------------------------------- 111 (243)
T 4h5g_A 81 GISATDERKEVFDFSIPYYENKISFLVHKAD------------------------------------------------- 111 (243)
T ss_dssp SCBCCHHHHTTEEECSCSBCCCEEEEEEGGG-------------------------------------------------
T ss_pred cccCChhHccEEEccCccccCcccccccccc-------------------------------------------------
Confidence 9999999999999999999999999998764
Q ss_pred ceeehhhhhhhhhcccccccccchhhHHHHHHHHHHHHHHhhccccceeeEeeccccCCCCChHhhhhCCCceEEeeCch
Q 003958 625 VVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSF 704 (784)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~~~i~~~~dl~~~~~~i~~~~~~~ 704 (784)
...+.+++||. +.+||+..|+.
T Consensus 112 --------------------------------------------------------~~~~~~~~dl~--g~~i~v~~g~~ 133 (243)
T 4h5g_A 112 --------------------------------------------------------VEKYKDLTSLE--SANIAAQKGTV 133 (243)
T ss_dssp --------------------------------------------------------TTTCCSHHHHH--TSEEEEETTSH
T ss_pred --------------------------------------------------------cccccccccCC--CCEEEecCCcH
Confidence 44688999999 88999999998
Q ss_pred HHHHHHhhcccCccCceeCCCHHHHHHHHhcCCcCCCeeEEEechhhhHHHHcCCCCeEEe---CCccccceEEEEeeCC
Q 003958 705 ARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIV---GQVFTKNGWGFVSIVS 781 (784)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~c~l~~~---~~~~~~~~~~~~~~k~ 781 (784)
.+.++.+. .+..++..+.+.++++++|.+ |++|+++.+...+.+++.++..+... ........++++++|+
T Consensus 134 ~~~~l~~~--~~~~~i~~~~~~~~~~~~l~~----GrvD~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~ 207 (243)
T 4h5g_A 134 PESMVKEQ--LPKAQLTSLTNMGEAVNELQA----GKIDAVHMDEPVALSYAAKNAGLAVATVSLKMKDGDANAVALRKN 207 (243)
T ss_dssp HHHHHHHH--CTTSEEEEESCHHHHHHHHHH----TSCSEEEEEHHHHHHHHHHCTTEEECSCCCCCCSSCCBCCEEESS
T ss_pred HHHHHHHh--cccceeEEeCCHHHHHHHHHc----CCccEEEecHHHHHHHHHHCCCCceeeccCCcccCceEEEEEeCC
Confidence 88888543 345678889999999999999 89999999999998888776654433 2344556789999999
Q ss_pred CC
Q 003958 782 SF 783 (784)
Q Consensus 782 s~ 783 (784)
+|
T Consensus 208 ~~ 209 (243)
T 4h5g_A 208 SD 209 (243)
T ss_dssp CH
T ss_pred CH
Confidence 75
No 44
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=99.76 E-value=2e-18 Score=173.55 Aligned_cols=196 Identities=14% Similarity=0.128 Sum_probs=158.5
Q ss_pred CCccEEEEecCCCccceeEeeCCCcceeeeeHHHHHHHHHHC-CCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEe
Q 003958 466 NGRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLL-PYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVG 544 (784)
Q Consensus 466 ~~~~l~v~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l-~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~ 544 (784)
..++|+|++.. .|+||.+.+.++++.||++||+++++++| |++ ++++.. .|.+++..|.+|++|++++
T Consensus 7 ~~~tl~vg~~~--~~pP~~~~d~~G~~~G~~vdl~~~ia~~l~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~ 75 (243)
T 4gvo_A 7 KVQTITVGTGT--QFPNVCFLDENGKLTGYDVELVKEIDKRLPGYK--FKFKTM-------DFSNLLVSLGAGKVDIVAH 75 (243)
T ss_dssp -CEEEEEEECS--EETTTEEECTTSCEESHHHHHHHHHHHTCTTEE--EEEEEC-------CGGGHHHHHHTTSCSEECS
T ss_pred cCCeEEEEECC--CCCCeEEECCCCcEEEhHHHHHHHHHHhccCCe--EEEEEC-------CHHHHHHHHHCCCCCEecc
Confidence 34678888764 47888887788999999999999999998 888 444443 5999999999999999999
Q ss_pred eEEeecCccccceeccccccccEEEEEeccCCccccccccccccHHHHHHHHHHHHHHHHHhhheecccCCCCCCCccCC
Q 003958 545 DIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQ 624 (784)
Q Consensus 545 ~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (784)
++++|++|.+.++||.|++.....+++.+..
T Consensus 76 ~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------------- 106 (243)
T 4gvo_A 76 QMEKSKEREKKFLFNDVAYNNFPLQLTVLDS------------------------------------------------- 106 (243)
T ss_dssp CCBCCHHHHHHSEECSSCCEECCEEEEEETT-------------------------------------------------
T ss_pred cCCCCHHHhhhhhhhhhhcccccceEEEecc-------------------------------------------------
Confidence 9999999999999999987766555554432
Q ss_pred ceeehhhhhhhhhcccccccccchhhHHHHHHHHHHHHHHhhccccceeeEeeccccCCCCChHhhhhCCCceEEeeCch
Q 003958 625 VVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSF 704 (784)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~~~i~~~~dl~~~~~~i~~~~~~~ 704 (784)
...|.+++||. |++||+..|+.
T Consensus 107 --------------------------------------------------------~~~~~~~~dL~--g~~v~v~~gs~ 128 (243)
T 4gvo_A 107 --------------------------------------------------------NNSINSTKDLA--GKRVITSATSN 128 (243)
T ss_dssp --------------------------------------------------------CCSCSSGGGGT--TCEEEECTTCH
T ss_pred --------------------------------------------------------ccccCchHHhc--CCeEEEecCch
Confidence 44789999998 89999999987
Q ss_pred HHHHHHhhcccC---ccCceeCCCHHHHHHHHhcCCcCCCeeEEEechhhhHHHHcCC-CCeEEeCCccccceEEEEeeC
Q 003958 705 ARNYLVDELNID---ESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTR-CEFSIVGQVFTKNGWGFVSIV 780 (784)
Q Consensus 705 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~-c~l~~~~~~~~~~~~~~~~~k 780 (784)
...++++..... ....+.+.+.++++++|.+ |++||++.+...+.|..++. .++.++++.+....++++++|
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 204 (243)
T 4gvo_A 129 GALVLKKINEEQGNNFEIAYEGQGSNDTANQLKT----GRADATISTPFAVDFQNKTSAIKEKVVGDVLSNAKVYFMLGK 204 (243)
T ss_dssp HHHHHHHHHHHTTSCSEEEECCSGGGSHHHHHHH----TSCSBEEECHHHHHHHHHTCSSCEEEEEEEEECCEECCEECT
T ss_pred HHHHHHHHHHhccccceeccccCChHHHHHHHHc----CCccEEEccHHHHHHHHhhCCCceEEeccCCCCCcEEEEEeC
Confidence 777775422211 1223456788899999999 89999999999999988774 578888888888899999999
Q ss_pred CCC
Q 003958 781 SSF 783 (784)
Q Consensus 781 ~s~ 783 (784)
++|
T Consensus 205 ~~~ 207 (243)
T 4gvo_A 205 DET 207 (243)
T ss_dssp TCH
T ss_pred CCH
Confidence 875
No 45
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=99.74 E-value=2.2e-17 Score=168.06 Aligned_cols=200 Identities=17% Similarity=0.318 Sum_probs=155.8
Q ss_pred CccEEEEecCCCccceeEeeCC-------CcceeeeeHHHHHHHHHHCCCccceEEee---CCCCCCCC-ChhHHHHHHH
Q 003958 467 GRHLRIGVPNRVSFREFVSVKG-------SEMTSGFCIDVFTAAINLLPYAVPYKLIP---FGDGHNNP-SCTELVRLIT 535 (784)
Q Consensus 467 ~~~l~v~~~~~~~~~~~~~~~~-------~~~~~G~~~dl~~~l~~~l~f~~~~~~~~---~~~~~~~~-~~~g~i~~l~ 535 (784)
+++|+|++... +||.+.+. ++.+.||++||++++++++|+++++...+ ++....++ .|.+++..|.
T Consensus 3 ~~~l~v~~~~~---pP~~~~~~~~~~~~~~g~~~G~~~dl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~ 79 (263)
T 1mqi_A 3 NKTVVVTTILE---SPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELV 79 (263)
T ss_dssp CCCEEEEECCB---TTTBEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHH
T ss_pred CeEEEEEEecC---CCcEEEecCcccccCCCceeeeHHHHHHHHHHHcCceEEEEEccccccCccCCCCCCcHHHHHHHH
Confidence 46788888764 55555443 48899999999999999999995554432 12222333 7999999999
Q ss_pred cCcccEEEeeEEeecCccccceeccccccccEEEEEeccCCccccccccccccHHHHHHHHHHHHHHHHHhhheecccCC
Q 003958 536 AGVYDAAVGDIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLND 615 (784)
Q Consensus 536 ~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~~~~~~ 615 (784)
+|++|++++++++|++|.+.++||.||+..+.++++++..
T Consensus 80 ~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~---------------------------------------- 119 (263)
T 1mqi_A 80 YGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT---------------------------------------- 119 (263)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTC----------------------------------------
T ss_pred cCCcCEEEEeeEecHHHHhhcccccceecccEEEEEcCcc----------------------------------------
Confidence 9999999988999999999999999999999999998763
Q ss_pred CCCCCccCCceeehhhhhhhhhcccccccccchhhHHHHHHHHHHHHHHhhccccceeeEeeccccCCCCChHhhhhCCC
Q 003958 616 EFRGPPKRQVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNY 695 (784)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~~~i~~~~dl~~~~~ 695 (784)
+|++++||. +.
T Consensus 120 -------------------------------------------------------------------~i~~~~dL~--g~ 130 (263)
T 1mqi_A 120 -------------------------------------------------------------------PIESAEDLS--KQ 130 (263)
T ss_dssp -------------------------------------------------------------------SCCSHHHHH--TC
T ss_pred -------------------------------------------------------------------ccCCHHHHh--cc
Confidence 588999999 55
Q ss_pred c---eEEeeCchHHHHHHhhcccC-----------ccCceeCCCHHHHHHHH--hcCCcCCCeeEEEechhhhHHHHcCC
Q 003958 696 P---IGYQVNSFARNYLVDELNID-----------ESRLVPLNSPEEYAKAL--KDGPHKGGVAAVVDDRAYAELFLSTR 759 (784)
Q Consensus 696 ~---i~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l--~~~~~~~~~~a~~~~~~~~~~~~~~~ 759 (784)
+ +|+..+++...++.+. ... ...+..+.+.++++++| .+ ++ +|++.+...+.|+++++
T Consensus 131 ~~~~ig~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----g~-da~~~~~~~~~~~~~~~ 204 (263)
T 1mqi_A 131 TEIAYGTLDSGSTKEFFRRS-KIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSK----GK-YAYLLESTMNEYIEQRK 204 (263)
T ss_dssp SSSEEECBSSSHHHHHHHHC-CSHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHHTT----TS-EEEEEEHHHHHHHTTST
T ss_pred cCeeEEEEeccHHHHHHHhc-cchhHHHHHHHHhhCCCceecCCHHHHHHHHhhcC----Cc-EEEEechHHHHHHHhcC
Confidence 5 6755444455555332 111 12466788999999999 77 66 89999999999988764
Q ss_pred -CCeEEeCCccccceEEEEeeCCCCC
Q 003958 760 -CEFSIVGQVFTKNGWGFVSIVSSFY 784 (784)
Q Consensus 760 -c~l~~~~~~~~~~~~~~~~~k~s~~ 784 (784)
|++..++..+....++++++|++++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~k~~~l 230 (263)
T 1mqi_A 205 PCDTMKVGGNLDSKGYGIATPKGSSL 230 (263)
T ss_dssp TCCEEEESCCSCCEEECCEEETTCTT
T ss_pred CCceEEcCCcccccceEEEEeCCCcc
Confidence 7888888888888999999999763
No 46
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=99.73 E-value=2.7e-17 Score=164.57 Aligned_cols=190 Identities=18% Similarity=0.283 Sum_probs=164.0
Q ss_pred ccEEEEecCCCccceeEee-CCCcceeeeeHHHHHHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeE
Q 003958 468 RHLRIGVPNRVSFREFVSV-KGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 546 (784)
Q Consensus 468 ~~l~v~~~~~~~~~~~~~~-~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~ 546 (784)
++|+|++.. .++||.+. +.++...|+++|+++.+++++|+++++.. . .|..++..+.+|++|++++++
T Consensus 3 ~~l~v~~~~--~~~P~~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~--~-------~~~~~~~~l~~g~~D~~~~~~ 71 (237)
T 3kzg_A 3 LNLTIGTSK--FNPPFEVWSGNNSSLYGFDIDLMQEICRRLHATCTFEA--Y-------IFDDLFPALKNREVDLVIASM 71 (237)
T ss_dssp CEEEEEEES--EETTTEECCCTTSCCBSHHHHHHHHHHHHTTCEEEEEE--E-------CGGGHHHHHHTTSSSEECSSC
T ss_pred ceEEEEECC--CCCCeEEEeCCCCCEeeehHHHHHHHHHHhCCceEEEE--c-------CHHHHHHHHhCCCCCEEEEcc
Confidence 578888874 37777776 68889999999999999999999855543 3 499999999999999999999
Q ss_pred EeecCccccceeccccccccEEEEEeccCCccccccccccccHHHHHHHHHHHHHHHHHhhheecccCCCCCCCccCCce
Q 003958 547 AIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVV 626 (784)
Q Consensus 547 ~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (784)
..+++|.+.++||.||+..+.++++++..
T Consensus 72 ~~~~~r~~~~~fs~p~~~~~~~~~~~~~~--------------------------------------------------- 100 (237)
T 3kzg_A 72 IITDERKKHFIFSLPYMESNSQYITTVDS--------------------------------------------------- 100 (237)
T ss_dssp BCCTTGGGTCEECCCSBCCEEEEEEETTC---------------------------------------------------
T ss_pred ccChhHhccceeeeeeeecceEEEEECCC---------------------------------------------------
Confidence 99999999999999999999999998764
Q ss_pred eehhhhhhhhhcccccccccchhhHHHHHHHHHHHHHHhhccccceeeEeeccccCCCCChHhhhhCCCceEEeeCchHH
Q 003958 627 TIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFAR 706 (784)
Q Consensus 627 ~~~~~~~~~~~~~~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~~~i~~~~dl~~~~~~i~~~~~~~~~ 706 (784)
+|++++||. +++||+..|+...
T Consensus 101 --------------------------------------------------------~~~~~~dL~--g~~i~~~~g~~~~ 122 (237)
T 3kzg_A 101 --------------------------------------------------------KISTFDDLH--GKKIGVRKGTPYA 122 (237)
T ss_dssp --------------------------------------------------------SCCSGGGGT--TCEEEEETTSTHH
T ss_pred --------------------------------------------------------CCCCHHHhC--CCEEEEecCCHHH
Confidence 489999999 8899999999877
Q ss_pred HHHHhhcccCccCceeCCCHHHHHHHHhcCCcCCCeeEEEechhhhHHHHcCCC--------CeEEeCCcc-ccceEEEE
Q 003958 707 NYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRC--------EFSIVGQVF-TKNGWGFV 777 (784)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~c--------~l~~~~~~~-~~~~~~~~ 777 (784)
.++.+. .+..++..+.+.++++++|.+ |++||++.+...+.+++++.. ++.+++..+ ....++++
T Consensus 123 ~~~~~~--~~~~~~~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 196 (237)
T 3kzg_A 123 RQVLSE--NRNNQVIFYELIQDMLLGLSN----NQVDASLMDYEAAKYWMASEPYAYKLIGKKYKLIGKKISIGEGYSIM 196 (237)
T ss_dssp HHHHHT--CSSCEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHTTSSTTHHHHCCSEEEEEEEEECTTCBCCE
T ss_pred HHHHHh--CCCCcEEEeCCHHHHHHHHHc----CCCCEEEeCcHHHHHHHHhCCccccccCCceEEecCccccCccEEEE
Confidence 777443 233577788999999999999 899999999999999998866 788888878 88889999
Q ss_pred eeCCCC
Q 003958 778 SIVSSF 783 (784)
Q Consensus 778 ~~k~s~ 783 (784)
++|++|
T Consensus 197 ~~k~~~ 202 (237)
T 3kzg_A 197 ANPDQF 202 (237)
T ss_dssp ECGGGH
T ss_pred EcCCCH
Confidence 999853
No 47
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=99.73 E-value=2.3e-17 Score=168.05 Aligned_cols=202 Identities=23% Similarity=0.317 Sum_probs=153.0
Q ss_pred CccEEEEecCCCccceeEeeCCC-----cceeeeeHHHHHHHHHHCCCccceEEeeC---CCCCCCCChhHHHHHHHcCc
Q 003958 467 GRHLRIGVPNRVSFREFVSVKGS-----EMTSGFCIDVFTAAINLLPYAVPYKLIPF---GDGHNNPSCTELVRLITAGV 538 (784)
Q Consensus 467 ~~~l~v~~~~~~~~~~~~~~~~~-----~~~~G~~~dl~~~l~~~l~f~~~~~~~~~---~~~~~~~~~~g~i~~l~~~~ 538 (784)
|++|+|++...+|| .+.+.+ +++.|+++||++++++++|+++++...+. +....+..|.++++.|.+|+
T Consensus 2 ~~~l~v~~~~~pP~---~~~~~~~~g~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~g~ 78 (265)
T 2v3u_A 2 GVVLRVVTVLEEPF---VMVSENVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLVGELVFKR 78 (265)
T ss_dssp CCEEEEEECCBTTT---BEEECCSTTCCCEEESHHHHHHHHHHHHHTCEEEEEECTTCCCCCBCTTSCBCHHHHHHHTTS
T ss_pred CeEEEEEEeccCCe---EEEecCCCCCcceEeEEEHHHHHHHHHHcCCcEEEEEccCCcccccCCCCCcchHHHHHHcCC
Confidence 67899999876555 333333 78999999999999999999955444321 11123468999999999999
Q ss_pred ccEEEeeEEeecCccccceeccccccccEEEEEeccCCccccccccccccHHHHHHHHHHHHHHHHHhhheecccCCCCC
Q 003958 539 YDAAVGDIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFR 618 (784)
Q Consensus 539 ~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~~~~~~~~~ 618 (784)
+|++++++++|++|.+.++||.||+..+.++++++..
T Consensus 79 ~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------- 115 (265)
T 2v3u_A 79 ADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGT------------------------------------------- 115 (265)
T ss_dssp CSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTC-------------------------------------------
T ss_pred cCeEEeeeEeehhhhccccccceeeeccEEEEEECCC-------------------------------------------
Confidence 9999989999999999999999999999999997763
Q ss_pred CCccCCceeehhhhhhhhhcccccccccchhhHHHHHHHHHHHHHHhhccccceeeEeeccccCCCCChHhhhhC-CCce
Q 003958 619 GPPKRQVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSS-NYPI 697 (784)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~~~i~~~~dl~~~-~~~i 697 (784)
+|++++||.+. +...
T Consensus 116 ----------------------------------------------------------------~i~~~~dL~~~v~v~~ 131 (265)
T 2v3u_A 116 ----------------------------------------------------------------SIQSLQDLSKQTDIPY 131 (265)
T ss_dssp ----------------------------------------------------------------CCCSHHHHHTCSSSCE
T ss_pred ----------------------------------------------------------------CccchhhhhhhhcEEE
Confidence 58899999821 1224
Q ss_pred EEeeCchHHHHHHhhcccCc------------------cCceeCCCHHHHHHHHhcCCcCCCeeEEEechhhhHHHHcC-
Q 003958 698 GYQVNSFARNYLVDELNIDE------------------SRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLST- 758 (784)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~- 758 (784)
|+..+.....++++. +... .++..+.+.++++++|++ |++ |++.+...+.|++++
T Consensus 132 g~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~----G~~-a~~~~~~~~~~~~~~~ 205 (265)
T 2v3u_A 132 GTVLDSAVYQHVRMK-GLNPFERDSMYSQMWRMINRSNGSENNVLESQAGIQKVKY----GNY-AFVWDAAVLEYVAIND 205 (265)
T ss_dssp ECBTTSHHHHHHHHH-HTCTTCSCTHHHHHHHHHCC-----CCBSSHHHHHHHHHH----SSC-EEEEEHHHHHHHHHHC
T ss_pred EEeccHHHHHHHHhc-CCCcccccHHHHHHHHHHHhhcCcccccCCHHHHHHHHHc----CCE-EEEEcchHHHHHHhcC
Confidence 445555566677532 1111 113457899999999999 788 999999999998764
Q ss_pred -CCCeEEeCCccccceEEEEeeCCCCC
Q 003958 759 -RCEFSIVGQVFTKNGWGFVSIVSSFY 784 (784)
Q Consensus 759 -~c~l~~~~~~~~~~~~~~~~~k~s~~ 784 (784)
.|++.+++..+...+++++++|++|+
T Consensus 206 ~~~~l~~~~~~~~~~~~~~~~~k~~~l 232 (265)
T 2v3u_A 206 PDCSFYTVGNTVADRGYGIALQHGSPY 232 (265)
T ss_dssp TTCCEEEEC---CCEEECCEEETTCTT
T ss_pred CCccEEEeccccCCcceEEEEeCCCcc
Confidence 58899999888888999999999873
No 48
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=99.72 E-value=3.3e-17 Score=164.81 Aligned_cols=195 Identities=15% Similarity=0.234 Sum_probs=166.8
Q ss_pred CccEEEEecCCCccceeEeeCCCcceeeeeHHHHHHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeE
Q 003958 467 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 546 (784)
Q Consensus 467 ~~~l~v~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~ 546 (784)
.++|+|++.. .++||.+.+.++.+.|+++|+++.+++++|++ ++++.. .|..++..|.+|++|++++++
T Consensus 4 ~~~l~v~~~~--~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~~ 72 (245)
T 3k4u_A 4 RGELRVGLEP--GYLPFEMKDKKGNVIGFDVDLAREMAKAMGVK--LKLVPT-------SWDGLIPGLVTEKFDIIISGM 72 (245)
T ss_dssp CSEEEEEECT--TSTTTCEEETTTEEESHHHHHHHHHHHHHTCE--EEEEEC-------CGGGHHHHHHTTSCSEECSSC
T ss_pred CCeEEEEECC--CcCCeeEECCCCCCccchHHHHHHHHHHhCCe--EEEEEc-------cHHHHHHHHhCCCcCEEEecC
Confidence 4678888872 46666666678899999999999999999988 444443 499999999999999998899
Q ss_pred EeecCccccceeccccccccEEEEEeccCCccccccccccccHHHHHHHHHHHHHHHHHhhheecccCCCCCCCccCCce
Q 003958 547 AIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVV 626 (784)
Q Consensus 547 ~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (784)
..+++|.+.+.||.||+..+..+++++..
T Consensus 73 ~~t~~r~~~~~~s~p~~~~~~~~~~~~~~--------------------------------------------------- 101 (245)
T 3k4u_A 73 TISQERNLRVNFVEPYIVVGQSLLVKKGL--------------------------------------------------- 101 (245)
T ss_dssp BCCHHHHTTSEECSCSEEECEEEEEETTT---------------------------------------------------
T ss_pred cCCHHHHhhcCcchhhheeceEEEEECCc---------------------------------------------------
Confidence 99999999999999999999999998774
Q ss_pred eehhhhhhhhhcccccccccchhhHHHHHHHHHHHHHHhhccccceeeEeeccccCCCCChHhhhhCCCceEEeeCchHH
Q 003958 627 TIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFAR 706 (784)
Q Consensus 627 ~~~~~~~~~~~~~~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~~~i~~~~dl~~~~~~i~~~~~~~~~ 706 (784)
...|++++||.+.+.+||+..|+...
T Consensus 102 ------------------------------------------------------~~~i~~~~dL~~~g~~i~v~~g~~~~ 127 (245)
T 3k4u_A 102 ------------------------------------------------------EKGVKSYKDLDKPELTLVTKFGVSAE 127 (245)
T ss_dssp ------------------------------------------------------TTTCCSGGGGCCSSCEEEEETTSHHH
T ss_pred ------------------------------------------------------ccccCCHHHhccCCcEEEEeCCcHHH
Confidence 34789999999878899999999988
Q ss_pred HHHHhhcccCccCceeCCCHHHHHHHHhcCCcCCCeeEEEechhhhHHHHcCC--CCeEEeCCccccceEEEEeeCCCC
Q 003958 707 NYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTR--CEFSIVGQVFTKNGWGFVSIVSSF 783 (784)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~--c~l~~~~~~~~~~~~~~~~~k~s~ 783 (784)
.++.+. .+..++..+.+.++++++|.+ |++||++.+...+.+++++. .++..++..+...+++++++|++|
T Consensus 128 ~~l~~~--~~~~~~~~~~~~~~~~~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 200 (245)
T 3k4u_A 128 YAAKRL--FKNAKLKTYDTEAEAVQEVLN----GKADMFIFDLPFNVAFMAQKGQGYLVHLDTSLTYEPLGWAIKKGDP 200 (245)
T ss_dssp HHHHHH--CSSSEEEEESSHHHHHHHHHS----SSSEEEEEEHHHHHHHHHHTTTTTEEEECCCCSCEEECCEECTTCH
T ss_pred HHHHhh--CCcCCEEEeCCHHHHHHHHHc----CCCcEEEEcHHHHHHHHhcCCccceeecCCCcccccEEEEEcCCCH
Confidence 888543 334577888999999999999 89999999999999987664 468888888888899999999875
No 49
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=99.72 E-value=8e-17 Score=162.46 Aligned_cols=194 Identities=20% Similarity=0.314 Sum_probs=163.2
Q ss_pred cCCCccEEEEecCCCccceeEeeCCCcceeeeeHHHHHHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEE
Q 003958 464 PNNGRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAV 543 (784)
Q Consensus 464 ~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~ 543 (784)
....++|+|++.. .++||.+. .++...|+++|+++.+++++|+++++.. . .|..++..+.+|++|+++
T Consensus 20 ~~~~~~l~v~~~~--~~~P~~~~-~~g~~~G~~~dl~~~i~~~~g~~~~~~~--~-------~~~~~~~~l~~g~~D~~~ 87 (249)
T 4f3p_A 20 GSMAKELVVGTDT--SFMPFEFK-QGDKYVGFDLDLWAEIAKGAGWTYKIQP--M-------DFAGLIPALQTQNIDVAL 87 (249)
T ss_dssp ----CCEEEEEES--CBTTTBEE-ETTEEESHHHHHHHHHHHHHTCCEEEEE--E-------CGGGHHHHHHTTSCSEEE
T ss_pred cccCceEEEEeCC--CCCCeEEe-cCCeEEEEhHHHHHHHHHHcCCceEEEe--c-------CHHHHHHHHHCCCCCEEE
Confidence 3456789999873 25555554 5778999999999999999999855544 3 489999999999999999
Q ss_pred eeEEeecCccccceeccccccccEEEEEeccCCccccccccccccHHHHHHHHHHHHHHHHHhhheecccCCCCCCCccC
Q 003958 544 GDIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKR 623 (784)
Q Consensus 544 ~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (784)
+++..+++|.+.+.||.||+.....+++++..
T Consensus 88 ~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~------------------------------------------------ 119 (249)
T 4f3p_A 88 SGMTIKEERRKAIDFSDPYYDSGLAAMVQANN------------------------------------------------ 119 (249)
T ss_dssp EEEECCHHHHTTEEECSCCEEEEEEEEEETTC------------------------------------------------
T ss_pred eccccCHHHHcCcceecceeeccEEEEEECCC------------------------------------------------
Confidence 99999999999999999999999999997763
Q ss_pred CceeehhhhhhhhhcccccccccchhhHHHHHHHHHHHHHHhhccccceeeEeeccccCCCCChHhhhhCCCceEEeeCc
Q 003958 624 QVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNS 703 (784)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~~~i~~~~dl~~~~~~i~~~~~~ 703 (784)
+.|++++||. +++||+..|+
T Consensus 120 ----------------------------------------------------------~~i~~~~dL~--g~~i~v~~g~ 139 (249)
T 4f3p_A 120 ----------------------------------------------------------TTIKSIDDLN--GKVIAAKTGT 139 (249)
T ss_dssp ----------------------------------------------------------CSCCSSGGGT--TSEEEEETTS
T ss_pred ----------------------------------------------------------CCcCChHHhC--CCEEEEeCCC
Confidence 2589999998 8899999999
Q ss_pred hHHHHHHhhcccCccCceeCCCHHHHHHHHhcCCcCCCeeEEEechhhhHHHHcCCC--CeEEeCCccccceEEEEeeCC
Q 003958 704 FARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRC--EFSIVGQVFTKNGWGFVSIVS 781 (784)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~c--~l~~~~~~~~~~~~~~~~~k~ 781 (784)
....++.+.. +..++..+.+.++++++|.+ |++||++.+...+.+++++.. ++.+++..+....++++++|+
T Consensus 140 ~~~~~l~~~~--~~~~~~~~~~~~~~~~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~ 213 (249)
T 4f3p_A 140 ATIDWIKAHL--KPKEIRQFPNIDQAYLALEA----GRVDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYGIGFPKG 213 (249)
T ss_dssp HHHHHHHHHC--CCSEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEEETT
T ss_pred hHHHHHHhcC--CCceEEEcCCHHHHHHHHHc----CCeeEEEeCcHHHHHHHHhCCCCceEEecCCCCCccEEEEEcCC
Confidence 9888885432 44577788999999999999 899999999999999998754 588888888888999999999
Q ss_pred CC
Q 003958 782 SF 783 (784)
Q Consensus 782 s~ 783 (784)
+|
T Consensus 214 ~~ 215 (249)
T 4f3p_A 214 SP 215 (249)
T ss_dssp CT
T ss_pred ch
Confidence 86
No 50
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=99.71 E-value=1.8e-16 Score=160.88 Aligned_cols=195 Identities=16% Similarity=0.267 Sum_probs=163.1
Q ss_pred CCccEEEEecCCCccceeEeeCCCcceeeeeHHHHHHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEee
Q 003958 466 NGRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGD 545 (784)
Q Consensus 466 ~~~~l~v~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~ 545 (784)
..++|+|++.. .++||.+.+.++.+.|+++|+++.+++++|+++ +++.. .|..++..+.+|++|+++++
T Consensus 27 ~~~~l~v~~~~--~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~--~~~~~-------~~~~~~~~l~~g~~D~~~~~ 95 (259)
T 4dz1_A 27 EGRTLNVAVSP--ASPPMLFKSADGKLQGIDLELFSSYCQSRHCKL--NITEY-------AWDGMLGAVASGQADVAFSG 95 (259)
T ss_dssp TTCEEEEEECC--CBTTTBEECTTCCEESHHHHHHHHHHHHHTCEE--EEEEC-------CHHHHHHHHHHTSSSEEEEE
T ss_pred cCCeEEEEECC--CCCCeEEECCCCCEEEeHHHHHHHHHHHhCCeE--EEEEc-------CHHHHHHHHhCCCCCEEEEC
Confidence 34678888863 367777766788999999999999999999884 44443 59999999999999999999
Q ss_pred EEeecCccccceeccccccccEEEEEeccCCccccccccccccHHHHHHHHHHHHHHHHHhhheecccCCCCCCCccCCc
Q 003958 546 IAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQV 625 (784)
Q Consensus 546 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (784)
++.+++|.+.++||.||+..+..+++++.+
T Consensus 96 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~-------------------------------------------------- 125 (259)
T 4dz1_A 96 ISITDKRKKVIDFSEPYYINSFYLVSMANH-------------------------------------------------- 125 (259)
T ss_dssp EECCHHHHTTEEECCCSEEEEEEEEEETTS--------------------------------------------------
T ss_pred CcCCHHHhhccccccchhhCceEEEEEcCC--------------------------------------------------
Confidence 999999999999999999999999998764
Q ss_pred eeehhhhhhhhhcccccccccchhhHHHHHHHHHHHHHHhhccccceeeEeeccccCCCCChHhhhhCCCceEEeeCchH
Q 003958 626 VTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFA 705 (784)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~~~i~~~~dl~~~~~~i~~~~~~~~ 705 (784)
...|++++||. +++||+..|+..
T Consensus 126 -------------------------------------------------------~~~i~~~~dL~--g~~v~v~~g~~~ 148 (259)
T 4dz1_A 126 -------------------------------------------------------KITLNNLNELN--KYSIGYPRGMAY 148 (259)
T ss_dssp -------------------------------------------------------CCCCCSGGGGG--GSCEEEETTSTH
T ss_pred -------------------------------------------------------CCCCCCHHHhC--CCEEEEeCCcHH
Confidence 34789999999 889999999988
Q ss_pred HHHHHhhccc---Cc-cCceeCCCHHHHHHHHhcCCcCCCeeEEEechhhhHHHHcC-CCCeEEeCCccccceEEEEeeC
Q 003958 706 RNYLVDELNI---DE-SRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLST-RCEFSIVGQVFTKNGWGFVSIV 780 (784)
Q Consensus 706 ~~~~~~~~~~---~~-~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~-~c~l~~~~~~~~~~~~~~~~~k 780 (784)
..++++.... +. .++..+.+.++++++|.+ |++||++.+...+.+++++ ..++..........+++++++|
T Consensus 149 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 224 (259)
T 4dz1_A 149 SDLIKNDLEPKGYYSLSKVKLYPTYNETMADLKN----GNLDLAFIEEPVYFTFKNKKKMPIESRYVFKNVDQLGIAFKK 224 (259)
T ss_dssp HHHHHHHTGGGTSCCGGGCEEESSHHHHHHHHHH----TSCSEEEEEHHHHHHHHHTSCCCEEEEEEEEEEEEEEEEEET
T ss_pred HHHHHHhcccccccccceeEecCCHHHHHHHHHc----CCCCEEEecHHHHHHHhccCCCceEeecccCCCceEEEEEeC
Confidence 8888653221 11 467778999999999999 8999999999998887765 4567776666677889999999
Q ss_pred CC
Q 003958 781 SS 782 (784)
Q Consensus 781 ~s 782 (784)
++
T Consensus 225 ~~ 226 (259)
T 4dz1_A 225 GS 226 (259)
T ss_dssp TC
T ss_pred Ch
Confidence 86
No 51
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=99.70 E-value=4.2e-17 Score=163.32 Aligned_cols=192 Identities=16% Similarity=0.232 Sum_probs=162.9
Q ss_pred CccEEEEecCCCccceeEeeCCCcceeeeeHHHHHHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeE
Q 003958 467 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 546 (784)
Q Consensus 467 ~~~l~v~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~ 546 (784)
.++|+|++.. .++||.+.+.++...|+++|+++.+++++|++++ ++.. .|..++..|.+|++|++++++
T Consensus 14 ~~~l~v~~~~--~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~--~~~~-------~~~~~~~~l~~g~~D~~~~~~ 82 (239)
T 3kbr_A 14 SGVLRVATTG--DYKPFSYRTEEGGYAGFDVDMAQRLAESLGAKLV--VVPT-------SWPNLMRDFADDRFDIAMSGI 82 (239)
T ss_dssp HTEEEEEECS--EETTTEEECTTSCEESHHHHHHHHHHHHTTCEEE--EEEC-------CTTTHHHHHHTTCCSEECSSC
T ss_pred CCeEEEEECC--CCCCeeEECCCCCEEeehHHHHHHHHHHHCCceE--EEEe-------CHHHHHHHHHCCCcCEEEeCC
Confidence 3578888853 4677777677889999999999999999999844 4443 489999999999999998899
Q ss_pred EeecCccccceeccccccccEEEEEeccCCccccccccccccHHHHHHHHHHHHHHHHHhhheecccCCCCCCCccCCce
Q 003958 547 AIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVV 626 (784)
Q Consensus 547 ~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (784)
..+++|.+.++||.||+..+..+++++.+
T Consensus 83 ~~t~~r~~~~~fs~p~~~~~~~~~~~~~~--------------------------------------------------- 111 (239)
T 3kbr_A 83 SINLERQRQAYFSIPYLRDGKTPITLCSE--------------------------------------------------- 111 (239)
T ss_dssp BCCHHHHTTCEECSCSEEECEEEEEEGGG---------------------------------------------------
T ss_pred cCCHHHcCccccchHHhccCcEEEEECCc---------------------------------------------------
Confidence 99999999999999999999999998764
Q ss_pred eehhhhhhhhhcccccccccchhhHHHHHHHHHHHHHHhhccccceeeEeeccccCCCCChHhhhhCCCceEEeeCchHH
Q 003958 627 TIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFAR 706 (784)
Q Consensus 627 ~~~~~~~~~~~~~~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~~~i~~~~dl~~~~~~i~~~~~~~~~ 706 (784)
...|++++||...+.+||+..|+...
T Consensus 112 ------------------------------------------------------~~~i~~~~dL~~~g~~v~~~~g~~~~ 137 (239)
T 3kbr_A 112 ------------------------------------------------------EARFQTLEQIDQPGVTAIVNPGGTNE 137 (239)
T ss_dssp ------------------------------------------------------GGGGSSHHHHSSTTCEEEECTTSHHH
T ss_pred ------------------------------------------------------ccccCCHHHhcCCCcEEEEcCCCcHH
Confidence 33679999999778899999999999
Q ss_pred HHHHhhcccCccCceeCCCHHHHHHHHhcCCcCCCeeEEEechhhhHHHHcCCCCeEEeC--CccccceEEEEeeC
Q 003958 707 NYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVG--QVFTKNGWGFVSIV 780 (784)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~c~l~~~~--~~~~~~~~~~~~~k 780 (784)
.++++. .+..++..+.+.++++++|.+ |++||++.+...+.|+++++.++..+. ..+....++++++|
T Consensus 138 ~~l~~~--~~~~~~~~~~~~~~~~~~l~~----grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 207 (239)
T 3kbr_A 138 KFARAN--LKKARILVHPDNVTIFQQIVD----GKADLMMTDAIEARLQSRLHPELCAVHPQQPFDFAEKAYLLPR 207 (239)
T ss_dssp HHHHHH--CSSSEEEECCCTTTHHHHHHT----TSCSEEEEEHHHHHHHHHHCTTEEECCCC-CCCCEEECCEECS
T ss_pred HHHHHh--CCCCceEEeCCHHHHHHHHHc----CCcCEEEEchHHHHHHHHhCCCcEEecCCCCccccceEEEEcC
Confidence 998543 334577788999999999999 899999999999999998877777665 45677789999998
No 52
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=99.70 E-value=1.5e-16 Score=159.70 Aligned_cols=189 Identities=17% Similarity=0.210 Sum_probs=162.8
Q ss_pred CccEEEEecCCCccceeEeeCCCcceeeeeHHHHHHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeE
Q 003958 467 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 546 (784)
Q Consensus 467 ~~~l~v~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~ 546 (784)
.++|+|++.. .++||.+.+.++.+.|+++|+++.+++++|++ ++++.. .|..++..|.+|++|++++++
T Consensus 10 ~~~l~v~~~~--~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~~ 78 (242)
T 3del_B 10 SEKFIVGTNA--TYPPFEFVDKRGEVVGFDIDLAREISNKLGKT--LDVREF-------SFDALILNLKQHRIDAVITGM 78 (242)
T ss_dssp -CEEEEEECS--CBTTTBEECTTSCEESHHHHHHHHHHHHHTCE--EEEEEC-------CGGGHHHHHHTTSSSEECSSB
T ss_pred CCcEEEEeCC--CCCCeeEECCCCCEEEeeHHHHHHHHHHcCCc--eEEEEc-------CHHHHHHHHhCCCcCEEEecC
Confidence 4678888853 46777776678899999999999999999988 444443 499999999999999998899
Q ss_pred EeecCccccceeccccc--cccEEEEEeccCCccccccccccccHHHHHHHHHHHHHHHHHhhheecccCCCCCCCccCC
Q 003958 547 AIITNRTKMADFTQPYI--ESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQ 624 (784)
Q Consensus 547 ~~t~~r~~~~~fs~p~~--~~~~~~~~~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (784)
..+++|.+.++| .||+ ..+..+++++..
T Consensus 79 ~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~------------------------------------------------- 108 (242)
T 3del_B 79 SITPSRLKEILM-IPYYGEEIKHLVLVFKGE------------------------------------------------- 108 (242)
T ss_dssp BCCHHHHTTEEE-EEEEEEEESEEEEEEESC-------------------------------------------------
T ss_pred cCCHHHHhcccc-eeeeecCCceEEEEeCCC-------------------------------------------------
Confidence 999999999999 9999 888899886653
Q ss_pred ceeehhhhhhhhhcccccccccchhhHHHHHHHHHHHHHHhhccccceeeEeeccccCCCCChHhhhhCCCceEEeeCch
Q 003958 625 VVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSF 704 (784)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~~~i~~~~dl~~~~~~i~~~~~~~ 704 (784)
+|++++||. +++||+..|+.
T Consensus 109 ----------------------------------------------------------~i~~~~dL~--g~~i~v~~g~~ 128 (242)
T 3del_B 109 ----------------------------------------------------------NKHPLPLTQ--YRSVAVQTGTY 128 (242)
T ss_dssp ----------------------------------------------------------CSCCCCGGG--SSCEEEETTSH
T ss_pred ----------------------------------------------------------CCCCHHHhC--CCEEEEEcCcH
Confidence 688999998 88999999999
Q ss_pred HHHHHHhhcccCccCceeCCCHHHHHHHHhcCCcCCCeeEEEechhhhHHHHcCCCCeEEeCCccccce----EEEEeeC
Q 003958 705 ARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVGQVFTKNG----WGFVSIV 780 (784)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~c~l~~~~~~~~~~~----~~~~~~k 780 (784)
...++.+ .+..++..+.+.++++++|.+ |++||++.+...+.+++++...+.+++..+.... ++++++|
T Consensus 129 ~~~~l~~---~~~~~~~~~~~~~~~~~~L~~----g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 201 (242)
T 3del_B 129 QEAYLQS---LSEVHIRSFDSTLEVLMEVMH----GKSPVAVLEPSIAQVVLKDFPALSTATIDLPEDQWVLGYGIGVAS 201 (242)
T ss_dssp HHHHHHH---STTCCEEEESSHHHHHHHHHT----TSSSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCEEEEEEEEET
T ss_pred HHHHHHh---CCCceEEEECCHHHHHHHHHc----CCCCEEEecHHHHHHHHHhCCCeEEecCccCcccccceEEEEEeC
Confidence 9999865 344577888999999999999 8999999999999999998888888887777777 9999999
Q ss_pred CCC
Q 003958 781 SSF 783 (784)
Q Consensus 781 ~s~ 783 (784)
++|
T Consensus 202 ~~~ 204 (242)
T 3del_B 202 DRP 204 (242)
T ss_dssp TCH
T ss_pred CCH
Confidence 864
No 53
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=99.69 E-value=1.9e-16 Score=161.55 Aligned_cols=192 Identities=18% Similarity=0.270 Sum_probs=162.1
Q ss_pred CccEEEEecCCCccceeEeeCCCcceeeeeHHHHHHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeE
Q 003958 467 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 546 (784)
Q Consensus 467 ~~~l~v~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~ 546 (784)
.++|+|++.. .++||.+.+.++.+.|+++|+++.+++++|++ ++++.. .+|..++..+.+|++|+++ ++
T Consensus 31 ~~~l~v~~~~--~~~P~~~~~~~g~~~G~~~dl~~~i~~~lg~~--~~~~~~------~~~~~~~~~l~~G~~D~~~-~~ 99 (267)
T 3mpk_A 31 HPVVKVAVLN--LFAPFTLFRTDEQFGGISAAVLQLLQLRTGLD--FEIIGV------DTVEELIAKLRSGEADMAG-AL 99 (267)
T ss_dssp CSEEEEEEET--EETTTEECCTTCCCBSHHHHHHHHHHHHHCCE--EEEEEE------SSHHHHHHHHHHTSCSEEE-EE
T ss_pred CCcEEEEeCC--CCCCeEEECCCCcEeeeHHHHHHHHHHHHCCe--EEEEec------CCHHHHHHHHHCCCccEEe-cc
Confidence 4678988854 37777776778899999999999999999988 444443 4699999999999999975 89
Q ss_pred EeecCccccceeccccccccEEEEEeccCCccccccccccccHHHHHHHHHHHHHHHHHhhheecccCCCCCCCccCCce
Q 003958 547 AIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVV 626 (784)
Q Consensus 547 ~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (784)
+.+++|.+.+.||.||+..+..+++++..
T Consensus 100 ~~t~~r~~~~~fs~p~~~~~~~l~~~~~~--------------------------------------------------- 128 (267)
T 3mpk_A 100 FVNSARESFLSFSRPYVRNGMVIVTRQDP--------------------------------------------------- 128 (267)
T ss_dssp ECCGGGTTTEEECSCSEEECEEEEEESST---------------------------------------------------
T ss_pred cCChhhhcceEechhhccCceEEEEECCC---------------------------------------------------
Confidence 99999999999999999999999997762
Q ss_pred eehhhhhhhhhcccccccccchhhHHHHHHHHHHHHHHhhccccceeeEeeccccCCCCChHhhhhCCCceEEeeCchHH
Q 003958 627 TIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFAR 706 (784)
Q Consensus 627 ~~~~~~~~~~~~~~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~~~i~~~~dl~~~~~~i~~~~~~~~~ 706 (784)
..|.+++||. +++||+..|+...
T Consensus 129 -------------------------------------------------------~~i~~~~dL~--g~~i~v~~g~~~~ 151 (267)
T 3mpk_A 129 -------------------------------------------------------DAPVDADHLD--GRTVALVRNSAAI 151 (267)
T ss_dssp -------------------------------------------------------TSCSSGGGCT--TCEEEEETTCTHH
T ss_pred -------------------------------------------------------CCCCCHHHHC--CCEEEEeCCchhH
Confidence 3579999998 8899999999999
Q ss_pred HHHHhhcccCccCceeCCCHHHHHHHHhcCCcCCCeeEEEechhhhHHHHcC--CCCeEEeCCcc-ccceEEEEeeCCCC
Q 003958 707 NYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLST--RCEFSIVGQVF-TKNGWGFVSIVSSF 783 (784)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~--~c~l~~~~~~~-~~~~~~~~~~k~s~ 783 (784)
.++++. .+..++..+.+.++++++|.+ |++||++.+...+.|++++ ..++.+++... ....++++++|++|
T Consensus 152 ~~l~~~--~~~~~~~~~~~~~~~l~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~~~ 225 (267)
T 3mpk_A 152 PLLQRR--YPQAKVVTADNPSEAMLMVAN----GQADAVVQTQISASYYVNRYFAGKLRIASALDLPPAEIALATTRGQT 225 (267)
T ss_dssp HHHHHH--CTTSEEEEESSHHHHHHHHHH----TSCSEEEEEHHHHHHHHHHHCTTTEEEEEECSSCCEEEEEEEETTCH
T ss_pred HHHHHh--CCCcEEEEeCCHHHHHHHHHc----CCCCEEEecHHHHHHHHHhcCCCceEEEeccCCCceeEEEEEcCCCH
Confidence 998543 344577888999999999999 8999999999999999887 45687776533 46788999999875
No 54
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=99.69 E-value=4e-16 Score=155.34 Aligned_cols=190 Identities=19% Similarity=0.267 Sum_probs=159.3
Q ss_pred ccEEEEecCCCccceeEee--CCCcceeeeeHHHHHHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEee
Q 003958 468 RHLRIGVPNRVSFREFVSV--KGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGD 545 (784)
Q Consensus 468 ~~l~v~~~~~~~~~~~~~~--~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~ 545 (784)
++|+|++.. ++||.+. +.++.+.|+.+|+++.+++++|++ ++++.. +.|..++..+.+|++|+++++
T Consensus 4 ~~l~v~~~~---~~P~~~~~~~~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~------~~~~~~~~~l~~g~~D~~~~~ 72 (233)
T 1ii5_A 4 MALKVGVVG---NPPFVFYGEGKNAAFTGISLDVWRAVAESQKWN--SEYVRQ------NSISAGITAVAEGELDILIGP 72 (233)
T ss_dssp CCEEEEECC---CTTTCEEC-----CEESHHHHHHHHHHHHHTCC--EEEEEC------SCHHHHHHHHHTTSCSEEEEE
T ss_pred ceEEEEecC---CCCeEEEecCCCCCEEEEeHHHHHHHHHHcCCc--EEEEEe------CCHHHHHHHHHCCCcCEEEee
Confidence 568888864 5566665 567899999999999999999988 555443 369999999999999999998
Q ss_pred EEeecCcc--ccceeccccccccEEEEEeccCCccccccccccccHHHHHHHHHHHHHHHHHhhheecccCCCCCCCccC
Q 003958 546 IAIITNRT--KMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKR 623 (784)
Q Consensus 546 ~~~t~~r~--~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (784)
+..+++|. +.+.|+.||+....++++++..
T Consensus 73 ~~~~~~r~~~~~~~~s~p~~~~~~~~~~~~~~------------------------------------------------ 104 (233)
T 1ii5_A 73 ISVTPERAAIEGITFTQPYFSSGIGLLIPGTA------------------------------------------------ 104 (233)
T ss_dssp EECCHHHHTSTTEEECCCCEEEEEEEEEEGGG------------------------------------------------
T ss_pred eecCccccccceeEEccceeecCeEEEEECCC------------------------------------------------
Confidence 99999999 9999999999999999998764
Q ss_pred CceeehhhhhhhhhcccccccccchhhHHHHHHHHHHHHHHhhccccceeeEeeccccCCCCChHhhhhCCCceEEeeCc
Q 003958 624 QVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNS 703 (784)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~~~i~~~~dl~~~~~~i~~~~~~ 703 (784)
...|.+++||. +++||+..|+
T Consensus 105 ---------------------------------------------------------~~~i~~~~dL~--g~~v~~~~g~ 125 (233)
T 1ii5_A 105 ---------------------------------------------------------TPLFRSVGDLK--NKEVAVVRDT 125 (233)
T ss_dssp ---------------------------------------------------------TTTCSSGGGGT--TCEEEEETTS
T ss_pred ---------------------------------------------------------CCCCCCHHHhC--CCeEEEECCc
Confidence 22689999998 8899999999
Q ss_pred hHHHHHHhhcccCccCceeCCCHHHHHHHHhcCCcCCCeeEEEechhhhHHHHcCCC--CeEEeCCccccceEEEEeeCC
Q 003958 704 FARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRC--EFSIVGQVFTKNGWGFVSIVS 781 (784)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~c--~l~~~~~~~~~~~~~~~~~k~ 781 (784)
....++++. ..++..+.+.++++++|.+ |++||++.+...+.|++++.. ++.+++..+....++++++|+
T Consensus 126 ~~~~~l~~~----~~~~~~~~~~~~~~~~l~~----g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 197 (233)
T 1ii5_A 126 TAVDWANFY----QADVRETNNLTAAITLLQK----KQVEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEPYGFVLKEN 197 (233)
T ss_dssp HHHHHHHHT----TCEEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHHCGGGCEEECSCCSEEEEEEEEEETT
T ss_pred cHHHHHHHc----CCCeEEcCCHHHHHHHHHc----CCccEEEeCHHHHHHHHHhCCCCcEEEeCccccccceEEEEcCC
Confidence 888888643 2356778899999999999 899999999999999887754 688888778888999999999
Q ss_pred CC
Q 003958 782 SF 783 (784)
Q Consensus 782 s~ 783 (784)
+|
T Consensus 198 ~~ 199 (233)
T 1ii5_A 198 SP 199 (233)
T ss_dssp CT
T ss_pred ch
Confidence 76
No 55
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=99.69 E-value=1.1e-16 Score=159.49 Aligned_cols=184 Identities=20% Similarity=0.317 Sum_probs=156.1
Q ss_pred CccEEEEecCCCccceeEeeCCCcceeeeeHHHHHHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeE
Q 003958 467 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 546 (784)
Q Consensus 467 ~~~l~v~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~ 546 (784)
.++|+|++.. .++||.+.+.+++..|+++|+++++++++|+++ +++.. .|..++..+.+|++|++++++
T Consensus 4 a~~l~v~~~~--~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~--~~~~~-------~~~~~~~~l~~g~~D~~~~~~ 72 (232)
T 3i6v_A 4 ADTVRMGTEG--AYPPYNFINDAGEVDGFERELGDELCKRAGLTC--EWVKN-------DWDSIIPNLVSGNYDTIIAGM 72 (232)
T ss_dssp --CEEEEECS--EETTTEEECTTSCEESHHHHHHHHHHHHHTCCE--EEEEC-------CGGGHHHHHHTTSCSEECSSC
T ss_pred CCEEEEEECC--CCCCeeEECCCCCEeeehHHHHHHHHHHcCCce--EEEEC-------CHHHHHHHHHCCCCCEEEeCC
Confidence 4678888763 467777767788999999999999999999994 44443 599999999999999999999
Q ss_pred EeecCccccceeccccccccEEEEEeccCCccccccccccccHHHHHHHHHHHHHHHHHhhheecccCCCCCCCccCCce
Q 003958 547 AIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVV 626 (784)
Q Consensus 547 ~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (784)
+.|++|.+.++||.||+..+..+++++..
T Consensus 73 ~~t~~r~~~~~fs~p~~~~~~~~~~~~~~--------------------------------------------------- 101 (232)
T 3i6v_A 73 SITDERDEVIDFTQNYIPPTASSYVATSD--------------------------------------------------- 101 (232)
T ss_dssp BCCHHHHTTSEEEEEEECCCEEEEEESST---------------------------------------------------
T ss_pred cCCHHHHhhcCcccccccCCeEEEEECCC---------------------------------------------------
Confidence 99999999999999999999999987651
Q ss_pred eehhhhhhhhhcccccccccchhhHHHHHHHHHHHHHHhhccccceeeEeeccccCCCCChHhhhhCCCceEEeeCchHH
Q 003958 627 TIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFAR 706 (784)
Q Consensus 627 ~~~~~~~~~~~~~~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~~~i~~~~dl~~~~~~i~~~~~~~~~ 706 (784)
++||. + +||+..|+...
T Consensus 102 ------------------------------------------------------------~~dL~--g-~igv~~g~~~~ 118 (232)
T 3i6v_A 102 ------------------------------------------------------------GADLS--G-IVAAQTATIQA 118 (232)
T ss_dssp ------------------------------------------------------------TCCTT--S-EEEEETTSHHH
T ss_pred ------------------------------------------------------------hHHhC--C-CEEEecCchHH
Confidence 45676 7 89999999999
Q ss_pred HHHHhhcccCccCceeCCCHHHHHHHHhcCCcCCCeeEEEechhhhHHHHcCC-CCeEEeCC-ccccceEEEEeeCCCC
Q 003958 707 NYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTR-CEFSIVGQ-VFTKNGWGFVSIVSSF 783 (784)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~-c~l~~~~~-~~~~~~~~~~~~k~s~ 783 (784)
.++++. ..++..+.+.++++++|.+ |++||++.+...+.|++++. +++.+++. .+...+++++++|++|
T Consensus 119 ~~l~~~----~~~~~~~~~~~~~~~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 189 (232)
T 3i6v_A 119 GYIAES----GATLVEFATPEETIAAVRN----GEADAVFADRDYLVPIVAESGGELMFVGDDVPLGGGVGMGLRESDG 189 (232)
T ss_dssp HHHHHS----SSEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHTTTSSEEEEEEEECSSCEEEEECTTCH
T ss_pred HHHHhc----CCeEEEeCCHHHHHHHHHc----CCcCEEEEChHHHHHHHHhCCCCeEEecCCCCCCCcEEEEEeCCCH
Confidence 999654 3567788999999999999 89999999999999998875 77888875 4566789999999864
No 56
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=99.68 E-value=1.9e-16 Score=161.66 Aligned_cols=193 Identities=17% Similarity=0.263 Sum_probs=164.7
Q ss_pred CccEEEEecCCCccceeEeeCCCcceeeeeHHHHHHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeE
Q 003958 467 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 546 (784)
Q Consensus 467 ~~~l~v~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~ 546 (784)
.++|+|++.. .++||.+.+.++...|+++|+++.+++++|++ ++++.. .|..++..+.+|++|++++++
T Consensus 20 ~~~l~v~~~~--~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~~ 88 (268)
T 3hv1_A 20 EKKIKIGFDA--TFVPMGYEEKDGSYIGFDIDLANAVFKLYGID--VEWQAI-------DWDMKETELKNGTIDLIWNGY 88 (268)
T ss_dssp HTEEEEEECT--EETTTEEECTTSCEECHHHHHHHHHHHTTTCE--EEEEEC-------CGGGHHHHHHHTSCSEECSSC
T ss_pred CCcEEEEECC--CCCCceEECCCCCEEEehHHHHHHHHHHhCCc--EEEEEC-------CHHHHHHHHHCCCCCEEEecC
Confidence 3678888864 46777776678899999999999999999988 555543 499999999999999999899
Q ss_pred EeecCccccceeccccccccEEEEEeccCCccccccccccccHHHHHHHHHHHHHHHHHhhheecccCCCCCCCccCCce
Q 003958 547 AIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVV 626 (784)
Q Consensus 547 ~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (784)
..+++|.+.+.||.||+....++++++.+
T Consensus 89 ~~t~~r~~~~~fs~p~~~~~~~~~~~~~~--------------------------------------------------- 117 (268)
T 3hv1_A 89 SVTDERKQSADFTEPYMVNEQVLVTKKSS--------------------------------------------------- 117 (268)
T ss_dssp BCCHHHHTTCEECCCCEEECEEEEEEGGG---------------------------------------------------
T ss_pred ccCHHHHhcCcCcHHHeeCceEEEEECCC---------------------------------------------------
Confidence 99999999999999999999999997763
Q ss_pred eehhhhhhhhhcccccccccchhhHHHHHHHHHHHHHHhhccccceeeEeeccccCCCCChHhhhhCCCceEEeeCchHH
Q 003958 627 TIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFAR 706 (784)
Q Consensus 627 ~~~~~~~~~~~~~~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~~~i~~~~dl~~~~~~i~~~~~~~~~ 706 (784)
.|++++||. +++||+..|+...
T Consensus 118 --------------------------------------------------------~i~~~~dL~--g~~i~v~~g~~~~ 139 (268)
T 3hv1_A 118 --------------------------------------------------------GIDSVAGMA--GKTLGAQAGSSGY 139 (268)
T ss_dssp --------------------------------------------------------CCCSSGGGT--TCCEEEETTCHHH
T ss_pred --------------------------------------------------------CCCCHHHhC--CCEEEEEeCCchH
Confidence 689999998 8899999999988
Q ss_pred HHHHhhcc-----cCccCceeCCCHHHHHHHHhcCCcCCCeeEEEechhhhHHHHcCC---CCeEEeCCccccceEEEEe
Q 003958 707 NYLVDELN-----IDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTR---CEFSIVGQVFTKNGWGFVS 778 (784)
Q Consensus 707 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~---c~l~~~~~~~~~~~~~~~~ 778 (784)
.++.+... .+..+++.+.+.++++++|.+ |++||++.+...+.|++++. +++.+++..+...++++++
T Consensus 140 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 215 (268)
T 3hv1_A 140 DAFNASPKILKDVVANQKVVQYSTFTQALIDLNS----GRIDGLLIDRVYANYYLEKSGVLDQYNVMPAGYEGESFAVGA 215 (268)
T ss_dssp HHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHH----TSCSEEEEEHHHHHHHHHHTTCGGGEEEEECSSCCEEECCEE
T ss_pred HHHHHhhHHHhhhcccceEEEeCCHHHHHHHHHc----CCCCEEEeCHHHHHHHHHhCCCCCceEECCCCCCCCcEEEEE
Confidence 88854321 222467778999999999999 89999999999999988764 5688888888888999999
Q ss_pred eCCCC
Q 003958 779 IVSSF 783 (784)
Q Consensus 779 ~k~s~ 783 (784)
+|++|
T Consensus 216 ~k~~~ 220 (268)
T 3hv1_A 216 RKVDK 220 (268)
T ss_dssp CTTCH
T ss_pred cCCCH
Confidence 99874
No 57
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=99.67 E-value=4.7e-16 Score=154.08 Aligned_cols=192 Identities=22% Similarity=0.325 Sum_probs=156.4
Q ss_pred ccEEEEecCCCccceeEeeCCCcceeeeeHHHHHHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeEE
Q 003958 468 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 547 (784)
Q Consensus 468 ~~l~v~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~~ 547 (784)
++|+|++.. .++||.+.+.++...|+++|+++.+++++|+++++ +.. .|..++..+.+|++|++++++.
T Consensus 2 ~~l~v~~~~--~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~--~~~-------~~~~~~~~l~~g~~D~~~~~~~ 70 (227)
T 3tql_A 2 DTIKFATEA--TYPPYVYMGPSGQVEGFGADIVKAVCKQMQAVCTI--SNQ-------PWDSLIPSLKLGKFDALFGGMN 70 (227)
T ss_dssp CEEEEEECS--CBTTTBEEC--CCEESHHHHHHHHHHHHTTCEEEE--EEC-------CHHHHHHHHHHTSCSEECSSCB
T ss_pred ceEEEEEcC--CCCCeeEECCCCCcccchHHHHHHHHHHhCCeEEE--EeC-------CHHHHHHHHhCCCCCEEEecCc
Confidence 468888864 36677766678889999999999999999998544 443 5999999999999999988999
Q ss_pred eecCccccceeccccccccEEEEEeccCCccccccccccccHHHHHHHHHHHHHHHHHhhheecccCCCCCCCccCCcee
Q 003958 548 IITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVVT 627 (784)
Q Consensus 548 ~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (784)
.+++|.+.+.||.||+....++++++.+
T Consensus 71 ~~~~r~~~~~~s~p~~~~~~~l~~~~~~---------------------------------------------------- 98 (227)
T 3tql_A 71 ITTARQKEVDFTDPYYTNSVSFIADKNT---------------------------------------------------- 98 (227)
T ss_dssp CCTTGGGTEEECSCSBCCEEEEEEETTS----------------------------------------------------
T ss_pred CCHhHHhheecccceeccceEEEEeCCC----------------------------------------------------
Confidence 9999999999999999999999998764
Q ss_pred ehhhhhhhhhcccccccccchhhHHHHHHHHHHHHHHhhccccceeeEeeccccCCCCChHhhhhCCCceEEeeCchHHH
Q 003958 628 IFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFARN 707 (784)
Q Consensus 628 ~~~~~~~~~~~~~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~~~i~~~~dl~~~~~~i~~~~~~~~~~ 707 (784)
+.+.+++||. +++||+..|+....
T Consensus 99 ------------------------------------------------------~~~~~~~dL~--g~~v~~~~g~~~~~ 122 (227)
T 3tql_A 99 ------------------------------------------------------PLTLSKQGLK--GKIIGVQGGTTFDS 122 (227)
T ss_dssp ------------------------------------------------------CCCCSTTTTT--TCEEEEETTSHHHH
T ss_pred ------------------------------------------------------CCCCCHHHhC--CCEEEEEecccHHH
Confidence 1237899998 88999999999888
Q ss_pred HHHhhcccCccCceeCCCHHHHHHHHhcCCcCCCeeEEEechhhhHHHHcCCC--CeEEeCCccccc-----eEEEEeeC
Q 003958 708 YLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRC--EFSIVGQVFTKN-----GWGFVSIV 780 (784)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~c--~l~~~~~~~~~~-----~~~~~~~k 780 (784)
++++..... .++..+.+.++++++|.+ |++||++.+...+.+++++.. ++.+++..+... +++++++|
T Consensus 123 ~l~~~~~~~-~~~~~~~~~~~~~~~l~~----grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (227)
T 3tql_A 123 YLQDSFGNS-ITIQRYPSEEDALMDLTS----GRVDAVVGDTPLIKQWLKQNGRREYVLIGKPVNDPNYFGKGVGIAVKK 197 (227)
T ss_dssp HHHHHHGGG-SEEEEESSHHHHHHHHTT----TSSSEEESCHHHHHHHHHHTTCCSEEEEEEECCCGGGCCSCBCCEEET
T ss_pred HHHHhcccc-ceEEEcCCHHHHHHHHHc----CCcCEEEeChHHHHHHHHhCCCCCEEEecCcccCccccccceEEEEcC
Confidence 886533211 567778999999999999 899999999999999887754 377776544443 45899999
Q ss_pred CCC
Q 003958 781 SSF 783 (784)
Q Consensus 781 ~s~ 783 (784)
++|
T Consensus 198 ~~~ 200 (227)
T 3tql_A 198 GNQ 200 (227)
T ss_dssp TCH
T ss_pred CCH
Confidence 865
No 58
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=99.66 E-value=9.7e-16 Score=152.65 Aligned_cols=192 Identities=16% Similarity=0.290 Sum_probs=162.5
Q ss_pred CCccEEEEecCCCccceeEeeCCCcceeeeeHHHHHHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEee
Q 003958 466 NGRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGD 545 (784)
Q Consensus 466 ~~~~l~v~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~ 545 (784)
..++|+|++.. .++||.+.+.++...|+.+|+++.+++++|+++++.. ..|..++..+.+|++|++ .+
T Consensus 9 ~~~~l~v~~~~--~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~---------~~~~~~~~~l~~g~~D~~-~~ 76 (234)
T 3h7m_A 9 RHRTIVVGGDR--DYPPYEFIDQNGKPAGYNVELTRAIAEVMGMTVEFRL---------GAWSEMFSALKSGRVDVL-QG 76 (234)
T ss_dssp SSSCEEEEEET--EETTTEEECTTSCEESHHHHHHHHHHHHHTCCEEEEE---------ECGGGHHHHHHTTSSSEE-EE
T ss_pred CCCEEEEEecC--CCCCeEEECCCCCEeeeEHHHHHHHHHHcCCceEEEe---------CCHHHHHHHHhCCCeeEE-Ee
Confidence 34678988843 4777777667889999999999999999999855543 259999999999999995 78
Q ss_pred EEeecCccccceeccccccccEEEEEeccCCccccccccccccHHHHHHHHHHHHHHHHHhhheecccCCCCCCCccCCc
Q 003958 546 IAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQV 625 (784)
Q Consensus 546 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (784)
+..+++|.+.+.||.|++....++++++..
T Consensus 77 ~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~-------------------------------------------------- 106 (234)
T 3h7m_A 77 ISWSEKRARQIDFTPPHTIVYHAIFARRDS-------------------------------------------------- 106 (234)
T ss_dssp EECCHHHHTTEEEEEEEEEEEEEEEEESSS--------------------------------------------------
T ss_pred ccCCHhHHhhcCCCccccccceEEEEECCC--------------------------------------------------
Confidence 899999999999999999999999997764
Q ss_pred eeehhhhhhhhhcccccccccchhhHHHHHHHHHHHHHHhhccccceeeEeeccccCCCCChHhhhhCCCceEEeeCchH
Q 003958 626 VTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFA 705 (784)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~~~i~~~~dl~~~~~~i~~~~~~~~ 705 (784)
+.|.+++||. +++||+..|+..
T Consensus 107 --------------------------------------------------------~~~~~~~dL~--g~~i~~~~g~~~ 128 (234)
T 3h7m_A 107 --------------------------------------------------------PPAAGLEDLR--GRKVALHRDGIM 128 (234)
T ss_dssp --------------------------------------------------------CCCSSGGGGT--TSCEEEETTSHH
T ss_pred --------------------------------------------------------CCCCCHHHhC--CCEEEEEeCchH
Confidence 2489999998 889999999988
Q ss_pred HHHHHhhcccCccCceeCCCHHHHHHHHhcCCcCCCeeEEEechhhhHHHHcCC--CCeEEeCCccccceEEEEeeCCCC
Q 003958 706 RNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTR--CEFSIVGQVFTKNGWGFVSIVSSF 783 (784)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~--c~l~~~~~~~~~~~~~~~~~k~s~ 783 (784)
..++++. .+..++..+.+.++++++|.+ |++||++.+...+.|++++. .++..++..+....++++++|++|
T Consensus 129 ~~~l~~~--~~~~~~~~~~~~~~~~~~l~~----g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (234)
T 3h7m_A 129 HEYLAER--GYGKDLVLTPTPADALRLLAA----GGCDYAVVAMVPGMYIIRENRLTNLVPVARSIAAQRYGYAVRQGDA 202 (234)
T ss_dssp HHHHHTT--TCGGGEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHTTCTTEEEEEEEEEEEEEEEEEETTCH
T ss_pred HHHHHhc--CCCceEEEeCCHHHHHHHHHc----CCceEEEeccHHHHHHHHhcCCCceEEeccccCCCceEEEEeCCCH
Confidence 8888542 233577788999999999999 89999999999999988763 468888878888899999999864
No 59
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=99.66 E-value=5.7e-16 Score=154.97 Aligned_cols=193 Identities=19% Similarity=0.277 Sum_probs=156.5
Q ss_pred CccEEEEecCCCccceeEeeCCCcceeeeeHHHHHHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeE
Q 003958 467 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 546 (784)
Q Consensus 467 ~~~l~v~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~ 546 (784)
.++|+|++.. .++||.+.+.+++..|+++|+++.+++++|+++++ +.. .|..++..|.+|++|++++++
T Consensus 3 ~~~l~v~~~~--~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~--~~~-------~~~~~~~~l~~g~~D~~~~~~ 71 (239)
T 1lst_A 3 PQTVRIGTDT--TYAPFSSKDAKGEFIGFDIDLGNEMCKRMQVKCTW--VAS-------DFDALIPSLKAKKIDAIISSL 71 (239)
T ss_dssp CSEEEEEECS--CBTTTBEECTTCCEESHHHHHHHHHHHHHTCEEEE--EEC-------CGGGHHHHHHTTSCSEECSSC
T ss_pred cceEEEEECC--CcCCeeEECCCCCEeeEHHHHHHHHHHHHCCeEEE--EeC-------CHHHHHHHHhCCCCCEEEECc
Confidence 3578888843 46777776677899999999999999999988544 432 599999999999999999889
Q ss_pred EeecCccccceeccccccccEEEEEeccCCccccccccccccHHHHHHHHHHHHHHHHHhhheecccCCCCCCCccCCce
Q 003958 547 AIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVV 626 (784)
Q Consensus 547 ~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (784)
+.+++|.+.++||.||+.....+++++..
T Consensus 72 ~~t~~r~~~~~~s~p~~~~~~~l~~~~~~--------------------------------------------------- 100 (239)
T 1lst_A 72 SITDKRQQEIAFSDKLYAADSRLIAAKGS--------------------------------------------------- 100 (239)
T ss_dssp BCCHHHHHHCEECSCSBCCCEEEEEETTC---------------------------------------------------
T ss_pred CcCHHHhhceeecccceeCceEEEEeCCC---------------------------------------------------
Confidence 99999999999999999999999998764
Q ss_pred eehhhhhhhhhcccccccccchhhHHHHHHHHHHHHHHhhccccceeeEeeccccCCC-CChHhhhhCCCceEEeeCchH
Q 003958 627 TIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPI-KGIDSLRSSNYPIGYQVNSFA 705 (784)
Q Consensus 627 ~~~~~~~~~~~~~~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~~~i-~~~~dl~~~~~~i~~~~~~~~ 705 (784)
++ .+++||. +++||+..|+..
T Consensus 101 --------------------------------------------------------~~~~~~~dL~--g~~v~~~~g~~~ 122 (239)
T 1lst_A 101 --------------------------------------------------------PIQPTLESLK--GKHVGVLQGSTQ 122 (239)
T ss_dssp --------------------------------------------------------CCCSSHHHHT--TCEEEEETTSHH
T ss_pred --------------------------------------------------------CCCCCHHHhC--CCEEEEEcCccH
Confidence 23 5899998 888999999988
Q ss_pred HHHHHhhcccCccCceeCCCHHHHHHHHhcCCcCCCeeEEEechhhhHH-HHcC--CCCeEEeCCccccc-----eEEEE
Q 003958 706 RNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAEL-FLST--RCEFSIVGQVFTKN-----GWGFV 777 (784)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~-~~~~--~c~l~~~~~~~~~~-----~~~~~ 777 (784)
..++++....+..++..+.+.+++++.|.+ |++|+++.+...+.+ ++.+ .+++.+++..+... +++++
T Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 198 (239)
T 1lst_A 123 EAYANDNWRTKGVDVVAYANQDLIYSDLTA----GRLDAALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTGVG 198 (239)
T ss_dssp HHHHHHHTGGGTCEEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHTTTSGGGTTEEECSSCBCCHHHHCSSBCCE
T ss_pred HHHHHHhcccCCCeEEEcCCHHHHHHHHHc----CCCCEEEeCcHHHHHHHHhccCCCceEEeccccccccccCcceEEE
Confidence 888865432233466778999999999999 899999999888764 4544 34687777665433 68999
Q ss_pred eeCCCC
Q 003958 778 SIVSSF 783 (784)
Q Consensus 778 ~~k~s~ 783 (784)
++|++|
T Consensus 199 ~~k~~~ 204 (239)
T 1lst_A 199 LRKDDT 204 (239)
T ss_dssp ECTTCH
T ss_pred EeCCCH
Confidence 999864
No 60
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=99.65 E-value=1.5e-15 Score=150.80 Aligned_cols=190 Identities=21% Similarity=0.309 Sum_probs=158.8
Q ss_pred CccEEEEecCCCccceeEeeCCCcceeeeeHHHHHHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeE
Q 003958 467 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 546 (784)
Q Consensus 467 ~~~l~v~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~ 546 (784)
.++|+|++.. .++||.+.+.+++..|+.+|+++.+++++|++++ ++.. .|..++..+.+|++|++++++
T Consensus 5 a~~l~v~~~~--~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~--~~~~-------~~~~~~~~l~~g~~D~~~~~~ 73 (229)
T 2y7i_A 5 ARTLHFGTSA--TYAPYEFVDADNKIVGFDIDVANAVCKEMQAECS--FTNQ-------SFDSLIPSLRFKKFDAVIAGM 73 (229)
T ss_dssp CCEEEEEECC--CBTTTBEECTTSCEESHHHHHHHHHHHHTTCEEE--EEEC-------CGGGHHHHHHTTSCSEECSSC
T ss_pred CCcEEEEeCC--CcCCceEECCCCCCcceeHHHHHHHHHHhCCeEE--EEEc-------CHHHHHHHHhCCCceEEEecC
Confidence 4678888852 4667776666789999999999999999999844 4433 599999999999999998888
Q ss_pred EeecCccccceeccccccc-cEEEEEeccCCccccccccccccHHHHHHHHHHHHHHHHHhhheecccCCCCCCCccCCc
Q 003958 547 AIITNRTKMADFTQPYIES-GLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQV 625 (784)
Q Consensus 547 ~~t~~r~~~~~fs~p~~~~-~~~~~~~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (784)
..+++|.+.+.|+.|++.. ...+++++.
T Consensus 74 ~~~~~r~~~~~~s~p~~~~~~~~~~~~~~--------------------------------------------------- 102 (229)
T 2y7i_A 74 DMTPKREQQVSFSQPYYEGLSAVVVTRKG--------------------------------------------------- 102 (229)
T ss_dssp BCCHHHHTTSEECSCSBCCCCEEEEEETT---------------------------------------------------
T ss_pred ccCHHHhcceeeccccccCCcEEEEEeCC---------------------------------------------------
Confidence 8999999999999999999 999998665
Q ss_pred eeehhhhhhhhhcccccccccchhhHHHHHHHHHHHHHHhhccccceeeEeeccccCCCCChHhhhhCCCceEEeeCchH
Q 003958 626 VTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFA 705 (784)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~~~i~~~~dl~~~~~~i~~~~~~~~ 705 (784)
. |++++||. +++||+..|+..
T Consensus 103 -------------------------------------------------------~--~~~~~dL~--g~~v~~~~g~~~ 123 (229)
T 2y7i_A 103 -------------------------------------------------------A--YHTFADLK--GKKVGLENGTTH 123 (229)
T ss_dssp -------------------------------------------------------S--CCSTGGGT--TCEEEEETTSHH
T ss_pred -------------------------------------------------------C--CCCHHHHC--CCEEEEecCCcH
Confidence 2 78899998 889999999988
Q ss_pred HHHHHhhcccCccCceeCCCHHHHHHHHhcCCcCCCeeEEEechhhhHHHHcCCCCeEEeCCcccc-----ceEEEEeeC
Q 003958 706 RNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVGQVFTK-----NGWGFVSIV 780 (784)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~c~l~~~~~~~~~-----~~~~~~~~k 780 (784)
..++++. .+..++..+.+.++++++|.+ |++||++.+...+.+++++..++.+++..+.. ..++++++|
T Consensus 124 ~~~l~~~--~~~~~~~~~~~~~~~~~~l~~----grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (229)
T 2y7i_A 124 QRYLQDK--QQAITPVAYDSYLNAFTDLKN----NRLEGVFGDVAAIGKWLKNNPDYAIMDERASDPDYYGKGLGIAVRK 197 (229)
T ss_dssp HHHHHHH--CTTSEEEEESCHHHHHHHHHT----TSCSEEEEEHHHHHHHHTTCTTEEECSCCBCCTTTSCCCBCCEECT
T ss_pred HHHHHHh--CCCCeEEecCCHHHHHHHHHc----CCcCEEEechHHHHHHHHhCCCeEEeccccccccccccceEEEEeC
Confidence 8888543 233467778899999999999 89999999999999999887788888765532 378899998
Q ss_pred CCC
Q 003958 781 SSF 783 (784)
Q Consensus 781 ~s~ 783 (784)
++|
T Consensus 198 ~~~ 200 (229)
T 2y7i_A 198 DND 200 (229)
T ss_dssp TCH
T ss_pred CCH
Confidence 864
No 61
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=99.64 E-value=1.6e-15 Score=150.02 Aligned_cols=190 Identities=21% Similarity=0.340 Sum_probs=158.2
Q ss_pred ccEEEEecCCCccceeEeeCCCcceeeeeHHHHHHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeEE
Q 003958 468 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 547 (784)
Q Consensus 468 ~~l~v~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~~ 547 (784)
++|+|++.. .++||.+.++ ++..|+++|+++.+++++|+++++. .. .|..++..+.+|++|++++++.
T Consensus 3 ~~l~v~~~~--~~~P~~~~~~-g~~~G~~~dl~~~~~~~~g~~~~~~--~~-------~~~~~~~~l~~g~~D~~~~~~~ 70 (226)
T 1wdn_A 3 KKLVVATDT--AFVPFEFKQG-DLYVGFDVDLWAAIAKELKLDYELK--PM-------DFSGIIPALQTKNVDLALAGIT 70 (226)
T ss_dssp -CEEEEEES--SBTTTBEEET-TEEESHHHHHHHHHHHHHTCCEEEE--EE-------CGGGHHHHHHTTSSSEEEEEEE
T ss_pred ceEEEEECC--CCCCeeEecC-CcEEEeeHHHHHHHHHHhCCEEEEE--EC-------CHHHHHHHHhCCCCCEEEEcCc
Confidence 468888873 3566665443 7899999999999999999885554 32 4999999999999999998899
Q ss_pred eecCccccceeccccccccEEEEEeccCCccccccccccccHHHHHHHHHHHHHHHHHhhheecccCCCCCCCccCCcee
Q 003958 548 IITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVVT 627 (784)
Q Consensus 548 ~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (784)
.+++|.+.+.|+.||+.....+++++..
T Consensus 71 ~~~~r~~~~~~~~p~~~~~~~~~~~~~~---------------------------------------------------- 98 (226)
T 1wdn_A 71 ITDERKKAIDFSDGYYKSGLLVMVKANN---------------------------------------------------- 98 (226)
T ss_dssp CCHHHHTTSEECSCCEEEEEEEEEETTC----------------------------------------------------
T ss_pred CCHHHhCccccccchhcCceEEEEeCCC----------------------------------------------------
Confidence 9999999999999999999999997763
Q ss_pred ehhhhhhhhhcccccccccchhhHHHHHHHHHHHHHHhhccccceeeEeeccccCCCCChHhhhhCCCceEEeeCchHHH
Q 003958 628 IFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFARN 707 (784)
Q Consensus 628 ~~~~~~~~~~~~~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~~~i~~~~dl~~~~~~i~~~~~~~~~~ 707 (784)
+.|.+++||. +++||+..|+....
T Consensus 99 ------------------------------------------------------~~i~~~~dL~--g~~i~~~~g~~~~~ 122 (226)
T 1wdn_A 99 ------------------------------------------------------NDVKSVKDLD--GKVVAVKSGTGSVD 122 (226)
T ss_dssp ------------------------------------------------------CSCSSSTTTT--TCEEEEETTSHHHH
T ss_pred ------------------------------------------------------CCCCCHHHhC--CCEEEEEcCCcHHH
Confidence 1478999998 88899999998888
Q ss_pred HHHhhcccCccCceeCCCHHHHHHHHhcCCcCCCeeEEEechhhhHHHHcCC--CCeEEeCCccccceEEEEeeCCCC
Q 003958 708 YLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTR--CEFSIVGQVFTKNGWGFVSIVSSF 783 (784)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~--c~l~~~~~~~~~~~~~~~~~k~s~ 783 (784)
++++. .+..++..+.+.+++++.|.+ |++||++.+...+.+++++. +++..++..+....++++++|++|
T Consensus 123 ~l~~~--~~~~~~~~~~~~~~~~~~l~~----g~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~ 194 (226)
T 1wdn_A 123 YAKAN--IKTKDLRQFPNIDNAYMELGT----NRADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSD 194 (226)
T ss_dssp HHHHH--CCCSEEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEECTTCH
T ss_pred HHHHh--CCCceEEEeCCHHHHHHHHHc----CCcCEEEeCcHHHHHHHHhCCCCceEEecCCcccCceEEEEeCCCH
Confidence 88553 233466778899999999999 89999999999999988775 478888777777889999999864
No 62
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=99.63 E-value=9.5e-16 Score=154.06 Aligned_cols=193 Identities=15% Similarity=0.141 Sum_probs=156.7
Q ss_pred CccEEEEecCCCccceeEeeCCCcceeeeeHHHHHHHHHHCC-CccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEee
Q 003958 467 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLP-YAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGD 545 (784)
Q Consensus 467 ~~~l~v~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~-f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~ 545 (784)
.++|+|++.. .++||.+ ..++...|+++|+++.+++++| ++++ ++.. .|..++..|.+|++|+++++
T Consensus 7 ~~~l~v~~~~--~~~P~~~-~~~g~~~G~~~dl~~~i~~~~g~~~~~--~~~~-------~~~~~~~~l~~g~~D~~~~~ 74 (246)
T 4eq9_A 7 KKEIIVATNG--SPRPFIY-EENGELTGYEIEVVRAIFKDSDKYDVK--FEKT-------EWSGVFAGLDADRYNMAVNN 74 (246)
T ss_dssp CEEEEEEECC--CSTTTSE-EETTEEESHHHHHHHHHHTTCSSEEEE--EEEC-------CHHHHHHHHHTTSCSEECSS
T ss_pred CCEEEEEeCC--CcCCeEE-cCCCCCcccHHHHHHHHHHHcCCceEE--EEeC-------CHHHHHHHHhCCCcCEEecc
Confidence 4678888874 3556555 3678899999999999999999 9844 4443 59999999999999999988
Q ss_pred EEeecCccccceeccccccccEEEEEeccCCccccccccccccHHHHHHHHHHHHHHHHHhhheecccCCCCCCCccCCc
Q 003958 546 IAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQV 625 (784)
Q Consensus 546 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (784)
+..+++|.+.+.||.||+.....+++++..
T Consensus 75 ~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~-------------------------------------------------- 104 (246)
T 4eq9_A 75 LSYTKERAEKYLYAAPIAQNPNVLVVKKDD-------------------------------------------------- 104 (246)
T ss_dssp CCCCHHHHHHEEECCCCEECCEEEEEETTC--------------------------------------------------
T ss_pred cccChhhhhceeeccceecCceEEEEECCC--------------------------------------------------
Confidence 999999999999999999999999998732
Q ss_pred eeehhhhhhhhhcccccccccchhhHHHHHHHHHHHHHHhhccccceeeEeeccccCCCCChHhhhhCCCceEEeeCchH
Q 003958 626 VTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFA 705 (784)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~~~i~~~~dl~~~~~~i~~~~~~~~ 705 (784)
.+|++++||. +++||+..|+..
T Consensus 105 --------------------------------------------------------~~i~~~~dL~--g~~i~~~~g~~~ 126 (246)
T 4eq9_A 105 --------------------------------------------------------SSIKSLDDIG--GKSTEVVQATTS 126 (246)
T ss_dssp --------------------------------------------------------CSCSSGGGCT--TCEEEECTTCHH
T ss_pred --------------------------------------------------------CCCCCHHHhC--CCEEEEecCccH
Confidence 2689999998 889999999988
Q ss_pred HHHHHhhc-ccCc--cCce-eCCCHHHHHHHHhcCCcCCCeeEEEechhhhHHHHcCCC--CeEEeCCccccce-EEEEe
Q 003958 706 RNYLVDEL-NIDE--SRLV-PLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRC--EFSIVGQVFTKNG-WGFVS 778 (784)
Q Consensus 706 ~~~~~~~~-~~~~--~~~~-~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~c--~l~~~~~~~~~~~-~~~~~ 778 (784)
..++.+.. ..+. ..+. ...+.++++++|.+ |++||++.+...+.+++++.. ++.++........ +++++
T Consensus 127 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~----g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (246)
T 4eq9_A 127 AKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSD----GQFDYKIFDKIGVETVIKNQGLDNLKVIELPSDQQPYVYPLL 202 (246)
T ss_dssp HHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHHTCTTEEEEECCCSSCCEECCEE
T ss_pred HHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHc----CCceEEEecHHHHHHHHHhCCCCCceEecCcCCCCCcEEEEE
Confidence 88886521 1121 2233 23588999999999 899999999999999987643 6888877666665 88999
Q ss_pred eCCCC
Q 003958 779 IVSSF 783 (784)
Q Consensus 779 ~k~s~ 783 (784)
+|++|
T Consensus 203 ~k~~~ 207 (246)
T 4eq9_A 203 AQGQD 207 (246)
T ss_dssp ETTCH
T ss_pred cCCCH
Confidence 99875
No 63
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=99.60 E-value=4.3e-15 Score=150.44 Aligned_cols=193 Identities=15% Similarity=0.141 Sum_probs=157.3
Q ss_pred ccEEEEecCCCccceeEeeCCCcceeeeeHHHHHHHHHHCCCc-cceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeE
Q 003958 468 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYA-VPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 546 (784)
Q Consensus 468 ~~l~v~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~-~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~ 546 (784)
++|+|++.. ++||.+.+.++...|+.+|+++.+++++|++ +++.. . .|..++..+.+|++|++++++
T Consensus 13 ~~l~v~~~~---~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~--~-------~~~~~~~~l~~g~~D~~~~~~ 80 (257)
T 2q88_A 13 GFARIAIAN---EPPFTAVGADGKVSGAAPDVAREIFKRLGVADVVASI--S-------EYGAMIPGLQAGRHDAITAGL 80 (257)
T ss_dssp TEEEEEECC---CTTTCEECTTCCEESHHHHHHHHHHHHTTCCEEEEEE--C-------CGGGHHHHHHTTSCSEECSCC
T ss_pred CeEEEEcCC---CCCeeEECCCCCcccccHHHHHHHHHHcCCCeeeEEe--C-------CHHHHHHHHHCCCcCEEEecc
Confidence 568888863 5666665667899999999999999999987 66553 2 499999999999999998889
Q ss_pred EeecCccccceeccccccccEEEEEeccCCccccccccccccHHHHHHHHHHHHHHHHHhhheecccCCCCCCCccCCce
Q 003958 547 AIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVV 626 (784)
Q Consensus 547 ~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (784)
..+++|.+.++||.||+..+..+++++..
T Consensus 81 ~~t~~r~~~~~~s~p~~~~~~~~~~~~~~--------------------------------------------------- 109 (257)
T 2q88_A 81 FMKPERCAAVAYSQPILCDAEAFALKKGN--------------------------------------------------- 109 (257)
T ss_dssp BCCHHHHTTSEECSCCCEECEEEEEETTC---------------------------------------------------
T ss_pred cCCHHHHhccccccchhcCceEEEEECCC---------------------------------------------------
Confidence 99999999999999999999999998764
Q ss_pred eehhhhhhhhhcccccccccchhhHHHHHHHHHHHHHHhhccccceeeEeeccccCCCCChHhhhhC-CCceEEeeCchH
Q 003958 627 TIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSS-NYPIGYQVNSFA 705 (784)
Q Consensus 627 ~~~~~~~~~~~~~~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~~~i~~~~dl~~~-~~~i~~~~~~~~ 705 (784)
...|++++||..+ +++||+..|+..
T Consensus 110 ------------------------------------------------------~~~i~~~~dL~~~~g~~i~~~~g~~~ 135 (257)
T 2q88_A 110 ------------------------------------------------------PLGLKSYKDIADNPDAKIGAPGGGTE 135 (257)
T ss_dssp ------------------------------------------------------TTCCCBHHHHHHCTTCCEEECTTSHH
T ss_pred ------------------------------------------------------ccCCCCHHHHhccCCceEEEECCccc
Confidence 2258999999966 778999999988
Q ss_pred HHHHHhhcccCccCceeCCCHHHHHHHHhcCCcCCCeeEEEechhhhHHHHcCCC--CeEEeCCccc---cceEEEEeeC
Q 003958 706 RNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRC--EFSIVGQVFT---KNGWGFVSIV 780 (784)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~c--~l~~~~~~~~---~~~~~~~~~k 780 (784)
..++++ ...+..++..+.+.++++++|.+ |++|+++.+...+.+++++.. .+..+.. +. ...++++++|
T Consensus 136 ~~~l~~-~~~~~~~~~~~~~~~~~~~~l~~----grvDa~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k 209 (257)
T 2q88_A 136 EKLALE-AGVPRDRVIVVPDGQSGLKMLQD----GRIDVYSLPVLSINDLVSKANDPNVEVLAP-VEGAPVYCDGAAFRK 209 (257)
T ss_dssp HHHHHH-TTCCGGGEEECSSHHHHHHHHHH----TSCSEEEEEHHHHHHHHHHHCCTTEEEECS-CBTCCCEEBCCEECG
T ss_pred HHHHHh-cCCCCceEEEcCCHHHHHHHHHc----CCCcEEEcCHHHHHHHHHhCCCcceeeecc-cCCccccceEEEEcC
Confidence 888854 33444567788999999999999 899999999999999887643 3555543 32 3467788888
Q ss_pred CCC
Q 003958 781 SSF 783 (784)
Q Consensus 781 ~s~ 783 (784)
++|
T Consensus 210 ~~~ 212 (257)
T 2q88_A 210 GDE 212 (257)
T ss_dssp GGH
T ss_pred CCH
Confidence 753
No 64
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=99.60 E-value=6.9e-15 Score=149.85 Aligned_cols=190 Identities=16% Similarity=0.183 Sum_probs=161.7
Q ss_pred CccEEEEecCCCccceeEeeCCCcceeeeeHHHHHHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeE
Q 003958 467 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 546 (784)
Q Consensus 467 ~~~l~v~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~ 546 (784)
.+.+++++.. .++|+.+.+.++...|+.+|+++.+++++|.++++ +.. .|..++..+.+|++|++++++
T Consensus 30 ~~~l~v~~~~--~~~P~~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~--~~~-------~~~~~~~~l~~g~~D~~~~~~ 98 (268)
T 3qax_A 30 NRIWIVGTNA--TYPPFEYVDAQGEVVGFDIDLAKAISEKLGKQLEV--REF-------AFDALILNLKKHRIDAILAGM 98 (268)
T ss_dssp -CEEEEEECS--CBTTTBEECTTSCEESHHHHHHHHHHHHHTCEEEE--EEC-------CGGGHHHHHHHTSSSEECSCC
T ss_pred CCeEEEEECC--CCCCceEECCCCCEEEEEHHHHHHHHHHhCCeEEE--Eec-------CHHHHHHHHhCCCccEEeecC
Confidence 4578888754 35676666678899999999999999999988444 432 599999999999999999889
Q ss_pred EeecCccccceeccccc--cccEEEEEeccCCccccccccccccHHHHHHHHHHHHHHHHHhhheecccCCCCCCCccCC
Q 003958 547 AIITNRTKMADFTQPYI--ESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQ 624 (784)
Q Consensus 547 ~~t~~r~~~~~fs~p~~--~~~~~~~~~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (784)
..+++|.+.++| .||+ ..+..+++++..
T Consensus 99 ~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~------------------------------------------------- 128 (268)
T 3qax_A 99 SITPSRQKEIAL-LPYYGDEVQELMVVSKRS------------------------------------------------- 128 (268)
T ss_dssp BCCHHHHTTSEE-EEEECCCBCEEEEEEETT-------------------------------------------------
T ss_pred ccCHhHhcceee-ecceecccceEEEEECCC-------------------------------------------------
Confidence 999999999999 9999 888999987662
Q ss_pred ceeehhhhhhhhhcccccccccchhhHHHHHHHHHHHHHHhhccccceeeEeeccccCCCCChHhhhhCCCceEEeeCch
Q 003958 625 VVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSF 704 (784)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~~~i~~~~dl~~~~~~i~~~~~~~ 704 (784)
.+|++++||. +++||+..|+.
T Consensus 129 ---------------------------------------------------------~~i~~~~dL~--g~~i~~~~g~~ 149 (268)
T 3qax_A 129 ---------------------------------------------------------LETPVLPLTQ--YSSVAVQTGTY 149 (268)
T ss_dssp ---------------------------------------------------------SCSCCCCGGG--SSCEEEETTSH
T ss_pred ---------------------------------------------------------CCCCCHHHhC--CCEEEEecCcH
Confidence 3689999998 88999999998
Q ss_pred HHHHHHhhcccCccCceeCCCHHHHHHHHhcCCcCCCeeEEEechhhhHHHHcCCCCeEEeCCccccce----EEEEeeC
Q 003958 705 ARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVGQVFTKNG----WGFVSIV 780 (784)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~c~l~~~~~~~~~~~----~~~~~~k 780 (784)
...++.+ .+..++..+.+.++++++|.+ |++||++.+...+.++++++.++.+++..+.... ++++++|
T Consensus 150 ~~~~l~~---~~~~~~~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 222 (268)
T 3qax_A 150 QEHYLLS---QPGICVRSFDSTLEVIMEVRY----GKSPVAVLEPSVGRVVLKDFPNLVATRLELPPECWVLGCGLGVAK 222 (268)
T ss_dssp HHHHHHT---STTCCEEEESCHHHHHHHHHT----TSSSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCBCCEEEEECT
T ss_pred HHHHHHh---CCCceEEecCCHHHHHHHHHc----CCCCEEEecHHHHHHHHHhCCCcEEecCccCcccccccEEEEEeC
Confidence 8888854 334567788999999999999 8999999999999999998877888887777777 9999999
Q ss_pred CCC
Q 003958 781 SSF 783 (784)
Q Consensus 781 ~s~ 783 (784)
++|
T Consensus 223 ~~~ 225 (268)
T 3qax_A 223 DRP 225 (268)
T ss_dssp TCH
T ss_pred CCH
Confidence 864
No 65
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=99.59 E-value=5.6e-15 Score=150.61 Aligned_cols=192 Identities=21% Similarity=0.305 Sum_probs=160.9
Q ss_pred ccEEEEecCCCccceeEe---eCCCcceeeeeHHHHHHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEe
Q 003958 468 RHLRIGVPNRVSFREFVS---VKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVG 544 (784)
Q Consensus 468 ~~l~v~~~~~~~~~~~~~---~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~ 544 (784)
++++|++.. .++|+.+ .++++...|+.+|+++.+++++|.++++ +.. .|..++..+.+|++|++++
T Consensus 39 ~~l~v~~~~--~~~P~~~~~~~~~~g~~~G~~~dl~~~~~~~~g~~~~~--~~~-------~~~~~~~~l~~g~~D~~~~ 107 (269)
T 4i62_A 39 GKLVVALNP--DFAPFEYQKVVDGKNQIVGSDIELAKAIATELGVELEL--SPM-------SFDNVLASVQSGKADLAIS 107 (269)
T ss_dssp TEEEEEECS--CBTTTBEEEEETTEEEEESHHHHHHHHHHHHHTCEEEE--EEC-------CHHHHHHHHHTTSCSEECS
T ss_pred CeEEEEecC--CCCCceeecccCCCCcEeeecHHHHHHHHHHHCCceEE--EEc-------CHHHHHHHHhCCCccEEec
Confidence 468888763 3566655 6788999999999999999999988544 432 5999999999999999998
Q ss_pred eEEeecCccccceeccccccccEEEEEeccCCccccccccccccHHHHHHHHHHHHHHHHHhhheecccCCCCCCCccCC
Q 003958 545 DIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQ 624 (784)
Q Consensus 545 ~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (784)
++..+++|.+.+.|+.|++.....+++++..
T Consensus 108 ~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~------------------------------------------------- 138 (269)
T 4i62_A 108 GVSKTDERSKVFDFSTPYYTAKNKLIVKKSD------------------------------------------------- 138 (269)
T ss_dssp SCBCCHHHHTTEEECSCCEECCEEEEEEGGG-------------------------------------------------
T ss_pred CCcCCHhHhhceecccchhhcceEEEEECCc-------------------------------------------------
Confidence 8999999999999999999999999998764
Q ss_pred ceeehhhhhhhhhcccccccccchhhHHHHHHHHHHHHHHhhccccceeeEeeccccCCCCChHhhhhCCCceEEeeCch
Q 003958 625 VVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSF 704 (784)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~~~i~~~~dl~~~~~~i~~~~~~~ 704 (784)
..+|++++||. +++||+..|+.
T Consensus 139 --------------------------------------------------------~~~i~~~~dL~--g~~i~~~~g~~ 160 (269)
T 4i62_A 139 --------------------------------------------------------LATYQSVNDLA--QKKVGAQKGSI 160 (269)
T ss_dssp --------------------------------------------------------TTTCSSGGGGC---CEEEEETTSH
T ss_pred --------------------------------------------------------cccccCHHHhC--CCeEEEecCch
Confidence 34789999998 88999999998
Q ss_pred HHHHHHhhcccCccCceeCCCHHHHHHHHhcCCcCCCeeEEEechhhhHHHHcCCCCeEEeCCccc---cceEEEEeeCC
Q 003958 705 ARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVGQVFT---KNGWGFVSIVS 781 (784)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~c~l~~~~~~~~---~~~~~~~~~k~ 781 (784)
...++.+. .+..++..+.+.++++++|.+ |++||++.+.+.+.++++++.++......+. ..+++++++|+
T Consensus 161 ~~~~l~~~--~~~~~~~~~~~~~~~~~~l~~----g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (269)
T 4i62_A 161 QETMAKDL--LQNSSLVSLPKNGNLITDLKS----GQVDAVIFEEPVAKGFVENNPDLAIADLNFEKEQDDSYAVAMKKD 234 (269)
T ss_dssp HHHHHHHH--CTTSEEEEESCHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHCTTEEECSCCCCC-CCCEECCEEESS
T ss_pred HHHHHHHh--CCCCcEEecCCHHHHHHHHHc----CCCCEEEeChHHHHHHHHhCCCCeEEeeccCCCcccceEEEEeCC
Confidence 88888543 234567788999999999999 8999999999999999888777777655444 66889999998
Q ss_pred CC
Q 003958 782 SF 783 (784)
Q Consensus 782 s~ 783 (784)
+|
T Consensus 235 ~~ 236 (269)
T 4i62_A 235 SK 236 (269)
T ss_dssp CH
T ss_pred CH
Confidence 75
No 66
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=99.59 E-value=8.3e-15 Score=145.15 Aligned_cols=191 Identities=24% Similarity=0.331 Sum_probs=154.2
Q ss_pred ccEEEEecCCCccceeEeeCCCcceeeeeHHHHHHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeEE
Q 003958 468 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 547 (784)
Q Consensus 468 ~~l~v~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~~ 547 (784)
++|+|++.. ++||.+. .+++..|+++|+++.+++++|+++ ++... +.|..++..+.+|++|++++++.
T Consensus 3 ~~l~v~~~~---~~P~~~~-~~g~~~G~~~dl~~~~~~~~g~~~--~~~~~------~~~~~~~~~l~~g~~D~~~~~~~ 70 (228)
T 2pyy_A 3 QPLLVATRV---IPPFVLS-NKGELSGFSIDLWRSIATQIGIES--KLIEY------SSVPELISAIKDNKVNLGIAAIS 70 (228)
T ss_dssp -CEEEEECC---BTTTBBC-C---CBSHHHHHHHHHHHHHTCCE--EEEEC------SSHHHHHHHHHTTSCSEECSSCB
T ss_pred ceEEEEecC---CCCeEEe-cCCceEEEeHHHHHHHHHHhCCcE--EEEEc------CCHHHHHHHHHCCCcCEEEeccc
Confidence 568888874 4555554 577899999999999999999884 44443 36999999999999999988888
Q ss_pred eecCccccceeccccccccEEEEEeccCCccccccccccccHHHHHHHHHHHHHHHHHhhheecccCCCCCCCccCCcee
Q 003958 548 IITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVVT 627 (784)
Q Consensus 548 ~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (784)
.+++|.+.+.|+.|++.....+++++...
T Consensus 71 ~~~~r~~~~~~~~p~~~~~~~~~~~~~~~--------------------------------------------------- 99 (228)
T 2pyy_A 71 ITAEREQNFDFSLPIFASGLQIMVRNLES--------------------------------------------------- 99 (228)
T ss_dssp CCHHHHHHSEECSCSEEEEEEEEEEC------------------------------------------------------
T ss_pred cCHHHHccceecccchhcceEEEEECCcc---------------------------------------------------
Confidence 99999999999999999999999977640
Q ss_pred ehhhhhhhhhcccccccccchhhHHHHHHHHHHHHHHhhccccceeeEeeccccCCCCChHhhhhCCCceEEeeCchHHH
Q 003958 628 IFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFARN 707 (784)
Q Consensus 628 ~~~~~~~~~~~~~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~~~i~~~~dl~~~~~~i~~~~~~~~~~ 707 (784)
...+|.+++||. +++||+..|+....
T Consensus 100 ----------------------------------------------------~~~~~~~~~dL~--g~~i~~~~g~~~~~ 125 (228)
T 2pyy_A 100 ----------------------------------------------------GTGDIRSIDDLP--GKVVATTAGSTAAT 125 (228)
T ss_dssp ------------------------------------------------------CCCCSGGGCT--TCEEEEETTSHHHH
T ss_pred ----------------------------------------------------ccCCcCCHHHcC--CCeEEEEcCcHHHH
Confidence 023689999998 88999999998888
Q ss_pred HHHhhcccCccCceeCCCHHHHHHHHhcCCcCCCeeEEEechhhhHHHHcCC--CCeEEeCCccccceEEEEeeCCCC
Q 003958 708 YLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTR--CEFSIVGQVFTKNGWGFVSIVSSF 783 (784)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~--c~l~~~~~~~~~~~~~~~~~k~s~ 783 (784)
++++ .+ .++..+.+.+++++.|.+ +++|+++.+...+.+++++. +++.+++..+....++++++|+++
T Consensus 126 ~l~~-~~---~~~~~~~~~~~~~~~l~~----g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (228)
T 2pyy_A 126 YLRE-HH---ISVLEVPKIEEAYKALQT----KKADAVVFDAPVLLFYAANEGKGKVEIVGSILREESYGIILPNNSP 195 (228)
T ss_dssp HHHH-TT---CEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEECCEECTTCT
T ss_pred HHHH-cC---CceEecCCHHHHHHHHHc----CCCCEEEecHHHHHHHHHhCCCCcEEEecccccceeEEEEEeCChH
Confidence 8854 22 256678899999999999 89999999999999988774 468877777777789999999875
No 67
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=99.59 E-value=1e-14 Score=150.32 Aligned_cols=192 Identities=18% Similarity=0.224 Sum_probs=159.4
Q ss_pred ccEEEEecCCCccceeEeeCCCcceeeeeHHHHHHHHHH----CC---CccceEEeeCCCCCCCCChhHHHHHHHcCccc
Q 003958 468 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINL----LP---YAVPYKLIPFGDGHNNPSCTELVRLITAGVYD 540 (784)
Q Consensus 468 ~~l~v~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~----l~---f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D 540 (784)
+.|+|++.. .++||.+.+.++...|+++|+++.+++. +| ++ ++++.. .|..++..+.+|++|
T Consensus 17 ~~l~v~~~~--~~~P~~~~~~~g~~~G~~~dl~~~ia~~l~~~~G~~~~~--v~~~~~-------~~~~~~~~l~~g~~D 85 (287)
T 2vha_A 17 GVIVVGHRE--SSVPFSYYDNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQ--VKLIPI-------TSQNRIPLLQNGTFD 85 (287)
T ss_dssp TEEEEEECS--EETTTEEECSSSCEESHHHHHHHHHHHHHHHHTTCTTCE--EEEEEC-------CTTTHHHHHHTTSCS
T ss_pred CeEEEEEcC--CCCCceEECCCCCcccccHHHHHHHHHHHHHhcCCCCce--EEEEEC-------CHHHHHHHHHCCCee
Confidence 568888764 3677777666788999999999999976 56 56 555543 478899999999999
Q ss_pred EEEeeEEeecCccccceeccccccccEEEEEeccCCccccccccccccHHHHHHHHHHHHHHHHHhhheecccCCCCCCC
Q 003958 541 AAVGDIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGP 620 (784)
Q Consensus 541 ~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (784)
++++++..+++|.+.++||.||+..+..+++++.+
T Consensus 86 ~~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~--------------------------------------------- 120 (287)
T 2vha_A 86 FECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGG--------------------------------------------- 120 (287)
T ss_dssp EECSSCBCCHHHHTTCEEEEEEEEEEEEEEEETTS---------------------------------------------
T ss_pred EEeccccCCcchhhcccccceeeecceEEEEECCC---------------------------------------------
Confidence 99888899999999999999999999999997654
Q ss_pred ccCCceeehhhhhhhhhcccccccccchhhHHHHHHHHHHHHHHhhccccceeeEeeccccCCCCChHhhhhCCCceEEe
Q 003958 621 PKRQVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQ 700 (784)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~~~i~~~~dl~~~~~~i~~~ 700 (784)
+|++++||. +++||+.
T Consensus 121 --------------------------------------------------------------~i~sl~dL~--g~~v~~~ 136 (287)
T 2vha_A 121 --------------------------------------------------------------DIKDFADLK--GKAVVVT 136 (287)
T ss_dssp --------------------------------------------------------------SCCSGGGGT--TCEEEEE
T ss_pred --------------------------------------------------------------CCCCHHHcC--CCEEEEe
Confidence 689999998 8889999
Q ss_pred eCchHHHHHHhhcc--cCccCceeCCCHHHHHHHHhcCCcCCCeeEEEechhhhHHHHcCC---CCeEEeCCccccceEE
Q 003958 701 VNSFARNYLVDELN--IDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTR---CEFSIVGQVFTKNGWG 775 (784)
Q Consensus 701 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~---c~l~~~~~~~~~~~~~ 775 (784)
.|+....++++... ....+++.+.+.++++++|.+ |++|+++.+...+.+++++. .++.+++..+....++
T Consensus 137 ~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~----G~vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (287)
T 2vha_A 137 SGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLES----GRAVAFMMDDALLAGERAKAKKPDNWDIVGKPQSQEAYG 212 (287)
T ss_dssp TTSHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHHTTSSSGGGEEEESCCSCEEEEE
T ss_pred CCCcHHHHHHHHhhccCCCceEEEcCCHHHHHHHHHc----CCeeEEEeChHHHHHHHHhCCCCCceEecCCccccCceE
Confidence 99988888854321 123466778999999999999 89999999999999988873 4688888878888999
Q ss_pred EEeeCCCC
Q 003958 776 FVSIVSSF 783 (784)
Q Consensus 776 ~~~~k~s~ 783 (784)
++++|++|
T Consensus 213 ~~~~k~~~ 220 (287)
T 2vha_A 213 CMLRKDDP 220 (287)
T ss_dssp EEECTTCH
T ss_pred EEEeCCCH
Confidence 99999864
No 68
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=99.57 E-value=5.5e-15 Score=150.99 Aligned_cols=190 Identities=16% Similarity=0.191 Sum_probs=152.9
Q ss_pred CccEEEEecCCCccceeEeeCCC---cceeeeeHHHHHHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEE
Q 003958 467 GRHLRIGVPNRVSFREFVSVKGS---EMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAV 543 (784)
Q Consensus 467 ~~~l~v~~~~~~~~~~~~~~~~~---~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~ 543 (784)
.++|+|++.. .++||.+.+.+ +...|+++|+++++++++|+++++. .. .|..++..+.+|++|+++
T Consensus 20 ~~~l~v~~~~--~~pP~~~~~~~~~~g~~~G~~~dl~~~i~~~~g~~v~~~--~~-------~~~~~~~~l~~G~~D~~~ 88 (271)
T 2iee_A 20 KGKIVVATSG--TLYPTSYHDTDSGSDKLTGYEVEVVREAAKRLGLKVEFK--EM-------GIDGMLTAVNSGQVDAAA 88 (271)
T ss_dssp HTEEEEEECS--CBTTTBEEETTTTCCEEECHHHHHHHHHHHHTTCEEEEE--EC-------CSTTHHHHHHHTSSSEEC
T ss_pred CCeEEEEECC--CCCCeeEeCCCCCCCCceeeHHHHHHHHHHHcCCeEEEE--EC-------CHHHHHHHHHCCCcCEEE
Confidence 3578888762 36666664445 8899999999999999999985544 33 488999999999999999
Q ss_pred eeEEeecCccccceeccccccccEEEEEeccCCccccccccccccHHHHHHHHHHHHHHHHHhhheecccCCCCCCCccC
Q 003958 544 GDIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKR 623 (784)
Q Consensus 544 ~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (784)
++++.+++|.+.++||.||+.....+++++..
T Consensus 89 ~~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~------------------------------------------------ 120 (271)
T 2iee_A 89 NDIDVTKDREEKFAFSTPYKYSYGTAIVRKDD------------------------------------------------ 120 (271)
T ss_dssp SSCBCCHHHHTTEEECCCSEEEEEEEEECTTT------------------------------------------------
T ss_pred eCCcCChhhccceEEeecceeCCeEEEEECCC------------------------------------------------
Confidence 88889999999999999999999999997764
Q ss_pred CceeehhhhhhhhhcccccccccchhhHHHHHHHHHHHHHHhhccccceeeEeeccccCCCCChHhhhhCCCceEEeeCc
Q 003958 624 QVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNS 703 (784)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~~~i~~~~dl~~~~~~i~~~~~~ 703 (784)
...|++++||. +++||+..|+
T Consensus 121 ---------------------------------------------------------~~~i~~~~dL~--g~~i~v~~g~ 141 (271)
T 2iee_A 121 ---------------------------------------------------------LSGIKTLKDLK--GKKAAGAATT 141 (271)
T ss_dssp ---------------------------------------------------------GGGCSSGGGGT--TCEEESCTTS
T ss_pred ---------------------------------------------------------CCCCCCHHHhC--CCEEEEeCCc
Confidence 22578999998 8899999999
Q ss_pred hHHHHHHhhcccCccCceeCCCHHHH--HHHHhcCCcCCCeeEEEechhhhHHHHc-CC--CCeEEe-CCccccceEEEE
Q 003958 704 FARNYLVDELNIDESRLVPLNSPEEY--AKALKDGPHKGGVAAVVDDRAYAELFLS-TR--CEFSIV-GQVFTKNGWGFV 777 (784)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~a~~~~~~~~~~~~~-~~--c~l~~~-~~~~~~~~~~~~ 777 (784)
....++++ ... ++..+.+.+++ +++|.+ |++| ++.+...+.+++. +. .++.++ +..+....++++
T Consensus 142 ~~~~~l~~-~~~---~~~~~~~~~~~~l~~~L~~----GrvD-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (271)
T 2iee_A 142 VYMEVARK-YGA---KEVIYDNATNEQYLKDVAN----GRTD-VILNDYYLQTLALAAFPDLNITIHPDIKYMPNKQALV 212 (271)
T ss_dssp HHHHHHHH-TTC---EEEECSSCCHHHHHHHHHH----TSSC-EEEEEHHHHHHHHHHCTTSSCEECSSCCEEEEEECCE
T ss_pred cHHHHHHH-cCC---ceEEeCChhhHHHHHHHHc----CCcc-EEeccHHHHHHHHHhCCCCceEEecCCCcccceEEEE
Confidence 88888854 222 67778888888 999999 8999 6666666655554 33 368777 677778889999
Q ss_pred eeCCCC
Q 003958 778 SIVSSF 783 (784)
Q Consensus 778 ~~k~s~ 783 (784)
++|++|
T Consensus 213 ~~k~~~ 218 (271)
T 2iee_A 213 MKKSNA 218 (271)
T ss_dssp EETTCH
T ss_pred EcCCCH
Confidence 999864
No 69
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=99.57 E-value=9.1e-15 Score=151.04 Aligned_cols=190 Identities=21% Similarity=0.299 Sum_probs=161.7
Q ss_pred ccEEEEecCCCccceeEeeCCCcceeeeeHHHHHHHHHHC---CCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEe
Q 003958 468 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLL---PYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVG 544 (784)
Q Consensus 468 ~~l~v~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l---~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~ 544 (784)
++|+|++.. .++|+.+.+.++...|+.+|+++.+++++ |++ ++++.. .|..++..|.+|++|++++
T Consensus 55 ~~l~vg~~~--~~~P~~~~~~~g~~~G~~~dl~~~i~~~~~~~g~~--v~~~~~-------~~~~~~~~l~~G~~D~~~~ 123 (291)
T 2yjp_A 55 GVIRIGVFG--DKPPFGYVDANGKNQGFDVEIAKDLAKDLLGSPDK--VEFVLT-------EAANRVEYVRSGKVDLILA 123 (291)
T ss_dssp TCEEEEECS--EETTTEEECTTSCEESHHHHHHHHHHHHHHSCGGG--EEEEEC-------CGGGHHHHHHTTSCSEECS
T ss_pred CeEEEEEcC--CCCCceEECCCCCEeehHHHHHHHHHHHhccCCce--EEEEEc-------cHHHHHHHHhCCCeeEEEe
Confidence 468888753 36777776677899999999999999999 988 555544 3889999999999999998
Q ss_pred eEEeecCccccceeccccccccEEEEEeccCCccccccccccccHHHHHHHHHHHHHHHHHhhheecccCCCCCCCccCC
Q 003958 545 DIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQ 624 (784)
Q Consensus 545 ~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (784)
++..+.+|.+.++|+.||...+..+++++.+
T Consensus 124 ~~~~~~~r~~~~~~~~p~~~~~~~l~~~~~~------------------------------------------------- 154 (291)
T 2yjp_A 124 NFTQTPERAEAVDFADPYMKVALGVVSPKNK------------------------------------------------- 154 (291)
T ss_dssp SCBCCHHHHTTEEECCCCEEECEEEEEETTS-------------------------------------------------
T ss_pred CCCCChHHHccceeccCeeecceEEEEeCCC-------------------------------------------------
Confidence 8889999999999999999999999987763
Q ss_pred ceeehhhhhhhhhcccccccccchhhHHHHHHHHHHHHHHhhccccceeeEeeccccCCCCChHhhhhCCCceEEeeCch
Q 003958 625 VVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSF 704 (784)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~~~i~~~~dl~~~~~~i~~~~~~~ 704 (784)
+|++++||. +++||+..|+.
T Consensus 155 ----------------------------------------------------------~i~sl~dL~--gk~v~~~~g~~ 174 (291)
T 2yjp_A 155 ----------------------------------------------------------PITDMAQLK--DQTLLVNKGTT 174 (291)
T ss_dssp ----------------------------------------------------------CCCSGGGGT--TSEEEEETTSH
T ss_pred ----------------------------------------------------------CCCCHHHhC--CCEEEEecCCc
Confidence 689999998 88999999998
Q ss_pred HHHHHHhhcccCccCceeCCCHHHHHHHHhcCCcCCCeeEEEechhhhHHHHcCCCCeEEeCCccccceE-EEEeeCCCC
Q 003958 705 ARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVGQVFTKNGW-GFVSIVSSF 783 (784)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~c~l~~~~~~~~~~~~-~~~~~k~s~ 783 (784)
...++++.. +..++..+.+.++++++|.+ |++||++.+.+.+.+++++..++.+++..+....+ +++++|++|
T Consensus 175 ~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 248 (291)
T 2yjp_A 175 ADAFFTKSH--PEVKLLKFDQNTETFDALKD----GRGVALAHDNALLWAWAKENPNFEVAIGNLGPAEFIAPAVQKGNA 248 (291)
T ss_dssp HHHHHHHHC--TTSEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHCTTEEEEECCSSSCEEECCEEETTCH
T ss_pred HHHHHHHhC--CCceEEEeCCHHHHHHHHHc----CCccEEEecHHHHHHHHHhCCCeEEcCCcccCCcceEEEEeCCCH
Confidence 888885432 33467778899999999999 89999999999999998877778888877888888 999999864
No 70
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=99.57 E-value=2e-14 Score=146.92 Aligned_cols=190 Identities=19% Similarity=0.321 Sum_probs=157.7
Q ss_pred CCccEEEEecCCCccceeEeeCCCcceeeeeHHHHHHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEee
Q 003958 466 NGRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGD 545 (784)
Q Consensus 466 ~~~~l~v~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~ 545 (784)
..++|+|++.. .++|+.+. .++...|+.+|+++.+++++|++ ++++.. .|..++..+.+|++|+++++
T Consensus 40 ~~~~l~v~~~~--~~~P~~~~-~~g~~~G~~~dl~~~i~~~~g~~--v~~~~~-------~~~~~~~~l~~G~~D~~~~~ 107 (272)
T 2pvu_A 40 TKKKVVVGTDA--AFAPFEYM-QKGKIVGFDVDLLDAVMKAAGLD--YELKNI-------GWDPLFASLQSKEVDMGISG 107 (272)
T ss_dssp CCCCEEEEECC--CBTTTBEE-ETTEEESHHHHHHHHHHHHHTCC--EEEEEC-------CHHHHHHHHHHTSSSEECSS
T ss_pred cCCeEEEEECC--CCCCeEEe-cCCeEEEEHHHHHHHHHHHhCCc--eEEEEC-------CHHHHHHHHhCCCCCEEEeC
Confidence 34678988863 35565553 35789999999999999999988 445443 39999999999999999888
Q ss_pred EEeecCccccceeccccccccEEEEEeccCCccccccccccccHHHHHHHHHHHHHHHHHhhheecccCCCCCCCccCCc
Q 003958 546 IAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQV 625 (784)
Q Consensus 546 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (784)
+..+++|.+.+.|+.||+.....+++++..
T Consensus 108 ~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~-------------------------------------------------- 137 (272)
T 2pvu_A 108 ITITDERKQSYDFSDPYFEATQVILVKQGS-------------------------------------------------- 137 (272)
T ss_dssp CBCCHHHHTTEEECSCCEEECEEEEEETTC--------------------------------------------------
T ss_pred CcCCHHHHhcCccchhhhccceEEEEECCC--------------------------------------------------
Confidence 889999999999999999999999997764
Q ss_pred eeehhhhhhhhhcccccccccchhhHHHHHHHHHHHHHHhhccccceeeEeeccccCCCCChHhhhhCCCceEEeeCchH
Q 003958 626 VTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFA 705 (784)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~~~i~~~~dl~~~~~~i~~~~~~~~ 705 (784)
+|++++||. +++||+..|+..
T Consensus 138 ---------------------------------------------------------~i~~~~dL~--g~~i~~~~g~~~ 158 (272)
T 2pvu_A 138 ---------------------------------------------------------PVKNALDLK--GKTIGVQNATTG 158 (272)
T ss_dssp ---------------------------------------------------------CCCSGGGGT--TSCEEEETTSHH
T ss_pred ---------------------------------------------------------CCCCHHHhC--CCeEEEEcCchH
Confidence 488999998 888999999988
Q ss_pred HHHHHhhcccCccCceeCCCHHHHHHHHhcCCcCCCeeEEEechhhhHHHHcCCC--CeEEeCCcc--ccceEEEEeeCC
Q 003958 706 RNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRC--EFSIVGQVF--TKNGWGFVSIVS 781 (784)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~c--~l~~~~~~~--~~~~~~~~~~k~ 781 (784)
..++++... ...++..+.+.++++++|.+ |++|+++.+...+.+++++.. ++.+++... ....++++++|+
T Consensus 159 ~~~l~~~~~-~~~~i~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~ 233 (272)
T 2pvu_A 159 QEAAEKLFG-KGPHIKKFETTVVAIMELLN----GGVDAVITDNAVANEYVKNNPNKKLQVIEDPKNFASEYYGMIFPKN 233 (272)
T ss_dssp HHHHHHHHC-SSTTEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHHCGGGCEEEECCTTTSCCEEECCEEETT
T ss_pred HHHHHHhcC-CCCeEEEcCCHHHHHHHHHc----CCccEEEeCHHHHHHHHHhCCCCceEEeccccccCCceEEEEEeCC
Confidence 888865433 34567778999999999999 899999999999999887654 488887653 667889999987
No 71
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=99.57 E-value=1.1e-14 Score=150.58 Aligned_cols=190 Identities=16% Similarity=0.209 Sum_probs=161.0
Q ss_pred ccEEEEecCCCccceeEeeCCCcceeeeeHHHHHHHHHHC---CCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEe
Q 003958 468 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLL---PYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVG 544 (784)
Q Consensus 468 ~~l~v~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l---~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~ 544 (784)
++|+|++.. .++|+.+.+.++...|+.+|+++.+++++ |++ ++++.. .|..++..+.+|++|++++
T Consensus 44 ~~l~v~~~~--~~~P~~~~~~~g~~~G~~~dl~~~i~~~~~~~g~~--~~~~~~-------~~~~~~~~l~~G~~D~~~~ 112 (292)
T 1xt8_A 44 GVVRIGVFG--DKPPFGYVDEKGNNQGYDIALAKRIAKELFGDENK--VQFVLV-------EAANRVEFLKSNKVDIILA 112 (292)
T ss_dssp SSEEEEECS--EETTTEEECTTSCEESHHHHHHHHHHHHHHSCTTC--EEEEEC-------CGGGHHHHHHTTSCSEECS
T ss_pred CeEEEEECC--CCCCeeEECCCCCEeeEhHHHHHHHHHHhccCCce--EEEEEc-------CHHHHHHHHhCCCeeEEee
Confidence 568888753 36777776677889999999999999999 988 444443 4889999999999999988
Q ss_pred eEEeecCccccceeccccccccEEEEEeccCCccccccccccccHHHHHHHHHHHHHHHHHhhheecccCCCCCCCccCC
Q 003958 545 DIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQ 624 (784)
Q Consensus 545 ~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (784)
++..+++|.+.+.|+.||...+..+++++.+
T Consensus 113 ~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~------------------------------------------------- 143 (292)
T 1xt8_A 113 NFTQTPQRAEQVDFCSPYMKVALGVAVPKDS------------------------------------------------- 143 (292)
T ss_dssp SCBCCHHHHTTEEECCCCEEEEEEEEEETTC-------------------------------------------------
T ss_pred cCCCCcchhcceeeeccceecceEEEEECCC-------------------------------------------------
Confidence 8889999999999999999999999987653
Q ss_pred ceeehhhhhhhhhcccccccccchhhHHHHHHHHHHHHHHhhccccceeeEeeccccCCCCChHhhhhCCCceEEeeCch
Q 003958 625 VVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSF 704 (784)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~~~i~~~~dl~~~~~~i~~~~~~~ 704 (784)
+|++++||. +++||+..|+.
T Consensus 144 ----------------------------------------------------------~i~~~~dL~--g~~i~~~~g~~ 163 (292)
T 1xt8_A 144 ----------------------------------------------------------NITSVEDLK--DKTLLLNKGTT 163 (292)
T ss_dssp ----------------------------------------------------------CCCSSGGGT--TSEEEEETTSH
T ss_pred ----------------------------------------------------------CCCCHHHhC--CCEEEEeCCCc
Confidence 688999998 88999999998
Q ss_pred HHHHHHhhcccCccCceeCCCHHHHHHHHhcCCcCCCeeEEEechhhhHHHHcCCCCeEEeCCccccceE-EEEeeCCCC
Q 003958 705 ARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVGQVFTKNGW-GFVSIVSSF 783 (784)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~c~l~~~~~~~~~~~~-~~~~~k~s~ 783 (784)
...++++.. +..++..+.+.++++++|.+ |++||++.+...+.+++++..++.+++..+....+ +++++|++|
T Consensus 164 ~~~~l~~~~--~~~~~~~~~~~~~~~~~L~~----G~vDa~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~~~ 237 (292)
T 1xt8_A 164 ADAYFTQNY--PNIKTLKYDQNTETFAALMD----KRGDALSHDNTLLFAWVKDHPDFKMGIKELGNKDVIAPAVKKGDK 237 (292)
T ss_dssp HHHHHHHHC--TTSEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHCTTEEEEEEEEEEEEEECCEEETTCH
T ss_pred HHHHHHHhC--CCceEEEcCCHHHHHHHHHc----CCccEEEecHHHHHHHHHhCCCeEEcccccccCceeEEEEeCCCH
Confidence 888885432 33466778999999999999 89999999999999998877678888777777888 999999864
No 72
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=99.55 E-value=2.1e-14 Score=147.63 Aligned_cols=188 Identities=18% Similarity=0.228 Sum_probs=159.0
Q ss_pred ccEEEEecCCCccceeEeeCCCcceeeeeHHHHHHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeEE
Q 003958 468 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIA 547 (784)
Q Consensus 468 ~~l~v~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~~ 547 (784)
++|+|++.. .++||.+.+.++...|+.+|+++.+++++|++ ++++.. .|..++..|.+|++|++++.+.
T Consensus 57 ~~l~v~~~~--~~~P~~~~~~~g~~~G~~~dl~~~i~~~~G~~--v~~~~~-------~~~~~~~~l~~G~~D~~~~~~~ 125 (283)
T 2yln_A 57 GTVTVGTEG--TYAPFTYHDKDGKLTGYDVEVTRAVAEKLGVK--VEFKET-------QWDSMMAGLKAGRFDVVANQVG 125 (283)
T ss_dssp CEEEEEECS--EETTTEEECTTSCEESHHHHHHHHHHHHHTCE--EEEEEC-------CGGGHHHHHHHTSCSEECSSCC
T ss_pred CeEEEEECC--CCCCeeEECCCCCEeeehHHHHHHHHHHcCCc--eEEEEC-------CHHHHHHHHHCCCcCEEEecCc
Confidence 568888764 37777776667889999999999999999988 555544 3999999999999999988888
Q ss_pred e-ecCccccceeccccccccEEEEEeccCCccccccccccccHHHHHHHHHHHHHHHHHhhheecccCCCCCCCccCCce
Q 003958 548 I-ITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVV 626 (784)
Q Consensus 548 ~-t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (784)
. +.+|.+.++|+.||+.....+++++.+
T Consensus 126 ~~t~~r~~~~~~~~p~~~~~~~l~~~~~~--------------------------------------------------- 154 (283)
T 2yln_A 126 LTSPERQATFDKSEPYSWSGAVLVAHNDS--------------------------------------------------- 154 (283)
T ss_dssp CCSHHHHHHEEECSCSEEECEEEEEETTC---------------------------------------------------
T ss_pred cCChhhhcceEeccCeeeecEEEEEECCC---------------------------------------------------
Confidence 8 999999999999999999999998764
Q ss_pred eehhhhhhhhhcccccccccchhhHHHHHHHHHHHHHHhhccccceeeEeeccccCCCCChHhhhhCCCceEEeeCchHH
Q 003958 627 TIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFAR 706 (784)
Q Consensus 627 ~~~~~~~~~~~~~~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~~~i~~~~dl~~~~~~i~~~~~~~~~ 706 (784)
+|++++||. +++||+..|+...
T Consensus 155 --------------------------------------------------------~i~s~~dL~--G~~v~v~~g~~~~ 176 (283)
T 2yln_A 155 --------------------------------------------------------NIKSIADIK--GVKTAQSLTSNYG 176 (283)
T ss_dssp --------------------------------------------------------SCCSGGGCT--TSEEEECTTSHHH
T ss_pred --------------------------------------------------------CCCCHHHhC--CCEEEEecCchHH
Confidence 489999997 8899999999888
Q ss_pred HHHHhhcccCccCceeCCCHHHHHHHHhcCCcCCCeeEEEechhhhHHHHcCCC--CeEEeC-Cccc-cceEEEEeeCCC
Q 003958 707 NYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRC--EFSIVG-QVFT-KNGWGFVSIVSS 782 (784)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~c--~l~~~~-~~~~-~~~~~~~~~k~s 782 (784)
.++++. + .++..+.+.++++++|.+ +++||++.+.+.+.+++++.. ++.+++ ..+. ...++++++|++
T Consensus 177 ~~l~~~-~---~~~~~~~~~~~~~~~l~~----g~vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~k~~ 248 (283)
T 2yln_A 177 EKAKAA-G---AQLVPVDGLAQSLTLIEQ----KRADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVGSGLIVNKGN 248 (283)
T ss_dssp HHHHHT-T---CEEEECSSHHHHHHHHHT----TSCCEEEEEHHHHHHHHHHSTTSSEEEEEECCGGGCEEECCEEESSC
T ss_pred HHHHHc-C---CeEEEeCCHHHHHHHHHc----CCCCEEEecHHHHHHHHHhCCCCcEEEccCcccCCcccEEEEEeCCC
Confidence 888543 2 356778899999999999 899999999999999877643 488887 7777 778999999986
Q ss_pred C
Q 003958 783 F 783 (784)
Q Consensus 783 ~ 783 (784)
|
T Consensus 249 ~ 249 (283)
T 2yln_A 249 D 249 (283)
T ss_dssp H
T ss_pred H
Confidence 4
No 73
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=99.44 E-value=1.7e-13 Score=138.60 Aligned_cols=189 Identities=18% Similarity=0.309 Sum_probs=153.1
Q ss_pred ccEEEEecCCCccceeEeeC-CCcceeeeeHHHHHHHHHHC---CCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEE
Q 003958 468 RHLRIGVPNRVSFREFVSVK-GSEMTSGFCIDVFTAAINLL---PYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAV 543 (784)
Q Consensus 468 ~~l~v~~~~~~~~~~~~~~~-~~~~~~G~~~dl~~~l~~~l---~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~ 543 (784)
++|+|++.. .++|+.+.+ .++...|+.+|+++.+++++ |.+ ++++.. .|..++..+.+|++|+++
T Consensus 38 ~~l~vg~~~--~~~p~~~~~~~~g~~~G~~~~l~~~~~~~~~~pg~~--v~~~~~-------~~~~~~~~l~~g~~D~~~ 106 (259)
T 2v25_A 38 GQLIVGVKN--DVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKK--IKLVAV-------NAKTRGPLLDNGSVDAVI 106 (259)
T ss_dssp TCEEEEECS--EETTTEEEETTTTEEESHHHHHHHHHHHHHHSCTTS--EEEEEC-------CTTTHHHHHHTTSCSEEC
T ss_pred CeEEEEECC--CCCCeEEEECCCCeEEEeeHHHHHHHHHHhcCCCcc--eEEEEc-------CHHHHHHHHhCCCCCEEE
Confidence 468888764 366666644 47889999999999999999 888 444443 478999999999999998
Q ss_pred eeEEeecCccccceeccccccccEEEEEeccCCccccccccccccHHHHHHHHHHHHHHHHHhhheecccCCCCCCCccC
Q 003958 544 GDIAIITNRTKMADFTQPYIESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKR 623 (784)
Q Consensus 544 ~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (784)
+++..+++|.+.++|+.||......+++++..
T Consensus 107 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~------------------------------------------------ 138 (259)
T 2v25_A 107 ATFTITPERKRIYNFSEPYYQDAIGLLVLKEK------------------------------------------------ 138 (259)
T ss_dssp SSCBCCHHHHTTEEECSCSEEEEEEEEEEGGG------------------------------------------------
T ss_pred ecCccCHHHHhcCcccccceeCceEEEEeCCC------------------------------------------------
Confidence 88888999999999999999999999997653
Q ss_pred CceeehhhhhhhhhcccccccccchhhHHHHHHHHHHHHHHhhccccceeeEeeccccCCCCChHhhhhCCCceEEeeCc
Q 003958 624 QVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNS 703 (784)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~~~i~~~~dl~~~~~~i~~~~~~ 703 (784)
+|.+++||. +.+|++..|+
T Consensus 139 -----------------------------------------------------------~i~~~~dL~--g~~i~~~~g~ 157 (259)
T 2v25_A 139 -----------------------------------------------------------KYKSLADMK--GANIGVAQAA 157 (259)
T ss_dssp -----------------------------------------------------------CCCSGGGCT--TCEEEEETTC
T ss_pred -----------------------------------------------------------CCCCHHHhC--CCEEEEecCC
Confidence 678999998 8889999988
Q ss_pred hHHHHHHhhc---ccCccCceeCCCHHHHHHHHhcCCcCCCeeEEEechhhhHHHHcCCCCeEEeCCccccceEEEEeeC
Q 003958 704 FARNYLVDEL---NIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVGQVFTKNGWGFVSIV 780 (784)
Q Consensus 704 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~c~l~~~~~~~~~~~~~~~~~k 780 (784)
....++++.. +. ..++..+.+.++.++.|.+ |++|+++.+...+.++++++.+ +++..+....++++++|
T Consensus 158 ~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~l~~----g~vDa~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k 230 (259)
T 2v25_A 158 TTKKAIGEAAKKIGI-DVKFSEFPDYPSIKAALDA----KRVDAFSVDKSILLGYVDDKSE--ILPDSFEPQSYGIVTKK 230 (259)
T ss_dssp SHHHHHHHHHHHTTC-CCEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHTTTCCTTEE--ECSCCCSEEEECCEEET
T ss_pred chHHHHHHHHHhcCC-ceeEEEeCCHHHHHHHHHc----CCCcEEEecHHHHHHHHHhCCC--ccccccccceeEEEEcC
Confidence 7777765422 21 1245678899999999999 8999999999999888877654 55666677788999999
Q ss_pred CCC
Q 003958 781 SSF 783 (784)
Q Consensus 781 ~s~ 783 (784)
++|
T Consensus 231 ~~~ 233 (259)
T 2v25_A 231 DDP 233 (259)
T ss_dssp TCH
T ss_pred CCH
Confidence 863
No 74
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=98.49 E-value=2.1e-07 Score=89.25 Aligned_cols=160 Identities=13% Similarity=0.107 Sum_probs=116.0
Q ss_pred CcceeeeeHHHHHHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeEEeecC------ccccceecccc
Q 003958 489 SEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIITN------RTKMADFTQPY 562 (784)
Q Consensus 489 ~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~~~t~~------r~~~~~fs~p~ 562 (784)
+.++.|+.=-|.+.+. |++ +++... -.|.+.+..|++|++|+++++++.+++ |...+||+.||
T Consensus 27 s~~yeGlatgl~~~f~---gi~--~~i~~m------rg~~~RI~aL~~gk~D~aI~S~~aa~e~~~~~~r~~~vdFg~~y 95 (231)
T 2ozz_A 27 TRLYEGLASGLKAQFD---GIP--FYYAHM------RGADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALELGPHT 95 (231)
T ss_dssp SHHHHHHHHHHHHTTT---TSC--EEEEEC------SCHHHHHHHHHTTSCSEEEEEHHHHHHHHHHSCEEEEEECCTTS
T ss_pred hhhhhHHHHHHHHHhc---CCc--EEEEEc------cChHHHHHHHHcCCCCEEEEecccchhhhcccCeEEEEEcCCCc
Confidence 4567888766666663 666 555443 259999999999999999999999999 99999999999
Q ss_pred ccccEEEEEeccCCccccccccccccHHHHHHHHHHHHHHHHHhhheecccCCCCCCCccCCceeehhhhhhhhhccccc
Q 003958 563 IESGLVVVAPVRKLDSNAWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVVTIFWFSFSTMFFAHKE 642 (784)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (784)
+...-.+++++..
T Consensus 96 Yv~~h~li~~~~~------------------------------------------------------------------- 108 (231)
T 2ozz_A 96 YVGEHQLICRKGE------------------------------------------------------------------- 108 (231)
T ss_dssp SSCCEEEEEETTC-------------------------------------------------------------------
T ss_pred cccCeEEEEeCCC-------------------------------------------------------------------
Confidence 9888888886663
Q ss_pred ccccchhhHHHHHHHHHHHHHHhhccccceeeEeeccccCCCCChHhhhhCCCceEEeeCchHHHHHHhhcccCccCcee
Q 003958 643 KTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQVNSFARNYLVDELNIDESRLVP 722 (784)
Q Consensus 643 ~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~~~i~~~~dl~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (784)
...| ++||+..||..+.++.+.. .....+..
T Consensus 109 --------------------------------------~~~i----------krVGvd~gS~dq~~lt~~~-~~g~~Ve~ 139 (231)
T 2ozz_A 109 --------------------------------------SGNV----------KRVGLDSRSADQKIMTDVF-FGDSDVER 139 (231)
T ss_dssp --------------------------------------GGGC----------CEEEECTTCHHHHHHHHHH-HTTSCCEE
T ss_pred --------------------------------------cccc----------EEEEecCCChhHHHHHhhh-cCCCeEEE
Confidence 1122 6799999998777775422 23345556
Q ss_pred C-CCHHHHHHHHhcCCcCCCeeEEEe--chhhhHHHHcCCCCeEEe--CC---ccccceEEEEeeCCCC
Q 003958 723 L-NSPEEYAKALKDGPHKGGVAAVVD--DRAYAELFLSTRCEFSIV--GQ---VFTKNGWGFVSIVSSF 783 (784)
Q Consensus 723 ~-~~~~~~~~~l~~~~~~~~~~a~~~--~~~~~~~~~~~~c~l~~~--~~---~~~~~~~~~~~~k~s~ 783 (784)
+ .+..++++.|++ |++||.+. |.+... .+.++... .. ........++++||++
T Consensus 140 ve~~y~~~i~~L~~----G~IDA~Iwn~d~~~a~----~~~~l~~~~l~~~~~~~~~~eavI~v~k~n~ 200 (231)
T 2ozz_A 140 VDLSYHESLQRIVK----GDVDAVIWNVVAENEL----TMLGLEATPLTDDPRFLQATEAVVLTRVDDY 200 (231)
T ss_dssp EECCHHHHHHHHHH----TSCCEEEEEC-CHHHH----HHTTEEEEECCSCHHHHHTTCEEEEEETTCH
T ss_pred EECCHHHHHHHHHc----CCccEEEEcCcchhhh----cCCCcceeccccccccccCCceEEEEECCCH
Confidence 7 788999999999 89999999 766665 22233322 22 2233455588999863
No 75
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=98.29 E-value=7e-05 Score=77.34 Aligned_cols=198 Identities=14% Similarity=0.075 Sum_probs=129.5
Q ss_pred EEEEEEeecCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEc-cCchhhHH
Q 003958 32 VNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIG-PQDAVTSH 110 (784)
Q Consensus 32 i~IG~i~~~~~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiG-p~~s~~~~ 110 (784)
++||++.|....+......+++.+.++. |+++.+.. .+..++....+....++.+++.+||. |..+....
T Consensus 2 ~~Ig~i~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~~~-~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (313)
T 2h3h_A 2 LTIGVIGKSVHPYWSQVEQGVKAAGKAL--------GVDTKFFV-PQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVI 72 (313)
T ss_dssp CEEEEECSCSSHHHHHHHHHHHHHHHHH--------TCEEEEEC-CSSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTH
T ss_pred eEEEEEeCCCcHHHHHHHHHHHHHHHHc--------CCEEEEEC-CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 5799998875334445667777777763 45554432 23567777777788888889998875 44443333
Q ss_pred HHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHc--CCcEEEEEEEc--CCCcchhHHHHHH
Q 003958 111 VVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHY--GWREVIAIYVD--DDHGRNGIAALGD 186 (784)
Q Consensus 111 ~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~--~w~~v~ii~~d--~~~g~~~~~~l~~ 186 (784)
.....+...++|+|......+. .+.+..+.+.....+..++++|... |.++|++|... ........+.+++
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~d~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~gf~~ 147 (313)
T 2h3h_A 73 PTIKKALEMGIPVVTLDTDSPD-----SGRYVYIGTDNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSLQRIQGFKD 147 (313)
T ss_dssp HHHHHHHHTTCCEEEESSCCTT-----SCCSCEEECCHHHHHHHHHHHHHHHHTSCSEEEEEESCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEeCCCCCC-----cceeEEECcCHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccHHHHHHHHHH
Confidence 3445566789999987553221 1233445667777788888888776 99999999865 2344567788999
Q ss_pred HHhccCcEEEEeeccCCCCChhHHHHHHHHhhcC--CceEEEEeccCCcHHHHHHHHHHcCC
Q 003958 187 TLAAKRCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGM 246 (784)
Q Consensus 187 ~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIvl~~~~~~~~~~~~~a~~~g~ 246 (784)
.+++.|+.+....... .+..+....++++.+. ++++|+. .....+..+++++++.|.
T Consensus 148 ~l~~~g~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~ 206 (313)
T 2h3h_A 148 AIKDSEIEIVDILNDE--EDGARAVSLAEAALNAHPDLDAFFG-VYAYNGPAQALVVKNAGK 206 (313)
T ss_dssp HHTTSSCEEEEEEECS--SCHHHHHHHHHHHHHHCTTCCEEEE-CSTTHHHHHHHHHHHTTC
T ss_pred HhcCCCCEEEEeecCC--CCHHHHHHHHHHHHHHCcCceEEEE-cCCCccHHHHHHHHHcCC
Confidence 9999998876432222 2334444555555433 4566654 445577889999999883
No 76
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=98.28 E-value=2.6e-05 Score=79.73 Aligned_cols=205 Identities=11% Similarity=0.003 Sum_probs=129.8
Q ss_pred CceEEEEEEeec---CCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCc
Q 003958 29 PSVVNIGALLSF---STNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQD 105 (784)
Q Consensus 29 ~~~i~IG~i~~~---~~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~ 105 (784)
....+||++.|. +..+......+++.+.++. |+++ .+.++..++....+....++.+++.+||....
T Consensus 17 ~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~--------g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 86 (296)
T 3brq_A 17 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEK--------GRQL--LLADGKHSAEEERQAIQYLLDLRCDAIMIYPR 86 (296)
T ss_dssp --CCEEEEEECGGGCC--CHHHHHHHHHHHHHHT--------TCEE--EEECCTTSHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred CCCceEEEEeCCcccCCchHHHHHHHHHHHHHHC--------CCEE--EEEeCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 456789999986 3444456667777777652 4544 45566677777777777788888998886443
Q ss_pred hhhHHHHHHhhhc-CCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCC--CcchhHH
Q 003958 106 AVTSHVVSHVANE-LQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIA 182 (784)
Q Consensus 106 s~~~~~va~~~~~-~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~ 182 (784)
+.....+ ..+.. .++|+|......+ + +.+..+..+....+..++++|...|.++|++|..+.. .+....+
T Consensus 87 ~~~~~~~-~~l~~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~l~~~G~~~I~~i~~~~~~~~~~~R~~ 159 (296)
T 3brq_A 87 FLSVDEI-DDIIDAHSQPIMVLNRRLR---K---NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLA 159 (296)
T ss_dssp SSCHHHH-HHHHHTCSSCEEEESCCCS---S---SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHH
T ss_pred CCChHHH-HHHHhcCCCCEEEEccccC---C---CCCCEEEEchHHHHHHHHHHHHHCCCceEEEEcCCCCCccHHHHHH
Confidence 2222233 33455 7999998754322 1 2333455666666788888888889999999986532 4556678
Q ss_pred HHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhc--CCceEEEEeccCCcHHHHHHHHHHcCCCCCCe
Q 003958 183 ALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGY 251 (784)
Q Consensus 183 ~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~ 251 (784)
.+++.+++.|+.+.....+....+..+....++++.+ .++++|+. .....+..+++++++.|+..++-
T Consensus 160 gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~d 229 (296)
T 3brq_A 160 GYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALVA-SNDDMAIGAMKALHERGVAVPEQ 229 (296)
T ss_dssp HHHHHHHTTTCCCCGGGEECCCSSHHHHHHHHHHHHTC--CCSEEEE-SSHHHHHHHHHHHHHHTCCTTTT
T ss_pred HHHHHHHHcCCCCChhhEEeCCCChhHHHHHHHHHHhCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCCc
Confidence 8999999988765432222211233334455555543 35677664 34455778899999999875543
No 77
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=98.21 E-value=5.4e-05 Score=76.48 Aligned_cols=199 Identities=10% Similarity=-0.031 Sum_probs=133.2
Q ss_pred EEEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcC-ceEEEccC-chhh
Q 003958 32 VNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQ-TVAIIGPQ-DAVT 108 (784)
Q Consensus 32 i~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~-v~aiiGp~-~s~~ 108 (784)
++||++.|.. ..+-.....+++.+.++. |+++.+...++..++....+....++.++ +.+||-.. .+..
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~ 72 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADEA--------GVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAED 72 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHHH--------TCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTT
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHH
Confidence 4799999864 333445667777777763 56666655556778888788888888888 99988644 3334
Q ss_pred HHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHc----CCcEEEEEEEcC--CCcchhHH
Q 003958 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHY----GWREVIAIYVDD--DHGRNGIA 182 (784)
Q Consensus 109 ~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~----~w~~v~ii~~d~--~~g~~~~~ 182 (784)
.......+...++|+|......+. . +.+..+.+.....+..++++|.+. |.++|+++..+. .......+
T Consensus 73 ~~~~~~~~~~~~ipvV~~~~~~~~---~--~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~~R~~ 147 (276)
T 3ksm_A 73 LTPSVAQYRARNIPVLVVDSDLAG---D--AHQGLVATDNYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQREQ 147 (276)
T ss_dssp THHHHHHHHHTTCCEEEESSCCSS---S--CSSEEEECCHHHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCcEEEEecCCCC---C--CcceEEccCHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCCchhHHHHHH
Confidence 445556677889999987543321 1 223445667777888888888777 899999998543 34456788
Q ss_pred HHHHHHhcc-CcEEEEeeccCCCCChhHHHHHHHHhhcC--CceEEEEeccCCcHHHHHHHHHHcCC
Q 003958 183 ALGDTLAAK-RCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGM 246 (784)
Q Consensus 183 ~l~~~l~~~-gi~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIvl~~~~~~~~~~~~~a~~~g~ 246 (784)
.+++.+++. |+.+.....- ..+..+....++++.+. ++++|+. .+...+..+++++++.|+
T Consensus 148 gf~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~ 211 (276)
T 3ksm_A 148 GFLDVLRKHDKIRIIAAPYA--GDDRGAARSEMLRLLKETPTIDGLFT-PNESTTIGALVAIRQSGM 211 (276)
T ss_dssp HHHHHHTTCTTEEEEECCBC--CSSHHHHHHHHHHHHHHCSCCCEEEC-CSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCcEEEEEecC--CCcHHHHHHHHHHHHHhCCCceEEEE-CCchhhhHHHHHHHHcCC
Confidence 999999888 8876632221 12344444555554433 4555443 344567789999999997
No 78
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=98.19 E-value=0.00021 Score=73.29 Aligned_cols=202 Identities=10% Similarity=-0.030 Sum_probs=127.0
Q ss_pred ceEEEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEE-ccCchh
Q 003958 30 SVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAII-GPQDAV 107 (784)
Q Consensus 30 ~~i~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aii-Gp~~s~ 107 (784)
++.+||++.|.. ..+......+++.+.++. |+++.+ ..++..++....+....++.+++.+|| .|..+.
T Consensus 3 ~~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~--------g~~~~~-~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~ 73 (303)
T 3d02_A 3 AEKTVVNISKVDGMPWFNRMGEGVVQAGKEF--------NLNASQ-VGPSSTDAPQQVKIIEDLIARKVDAITIVPNDAN 73 (303)
T ss_dssp -CEEEEEECSCSSCHHHHHHHHHHHHHHHHT--------TEEEEE-ECCSSSCHHHHHHHHHHHHHTTCSEEEECCSCHH
T ss_pred CceEEEEEeccCCChHHHHHHHHHHHHHHHc--------CCEEEE-ECCCCCCHHHHHHHHHHHHHcCCCEEEEecCChH
Confidence 367899999864 344455667777777763 444432 234566887777777888888999876 454444
Q ss_pred hHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHH-cCCc-EEEEEEEcC--CCcchhHHH
Q 003958 108 TSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDH-YGWR-EVIAIYVDD--DHGRNGIAA 183 (784)
Q Consensus 108 ~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~-~~w~-~v~ii~~d~--~~g~~~~~~ 183 (784)
........+...++|+|...... ..+ +.+..........+..++++|.+ .|.+ +++++.... .......+.
T Consensus 74 ~~~~~~~~~~~~~ipvV~~~~~~--~~~---~~~~~v~~d~~~~g~~a~~~l~~~~g~~~~i~~i~g~~~~~~~~~R~~g 148 (303)
T 3d02_A 74 VLEPVFKKARDAGIVVLTNESPG--QPS---ANWDVEIIDNEKFAAEYVEHMAKRMGGKGGYVIYVGSLTVPQHNLWADL 148 (303)
T ss_dssp HHHHHHHHHHHTTCEEEEESCTT--CTT---CSEEEESSCHHHHHHHHHHHHHHHTTTCEEEEEECSCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEEecCC--CCC---CceEEEecCHHHHHHHHHHHHHHHhCcCceEEEEecCCCCccHHHHHHH
Confidence 43444456667899999875431 111 33445666777778888888776 8887 999987543 233456788
Q ss_pred HHHHHhccC--cEEEEeeccCCCCChhHHHHHHHHhhcC--CceEEEEeccCCcHHHHHHHHHHcCCC
Q 003958 184 LGDTLAAKR--CRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGML 247 (784)
Q Consensus 184 l~~~l~~~g--i~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIvl~~~~~~~~~~~~~a~~~g~~ 247 (784)
+++.+++.+ +++... .+....+..+....++++.+. ++++|+. .....+..+++++++.|+.
T Consensus 149 f~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~ 214 (303)
T 3d02_A 149 LVKYQKEHYPDMHEVTR-RMPVAESVDDSRRTTLDLMKTYPDLKAVVS-FGSNGPIGAGRAVKEKRAK 214 (303)
T ss_dssp HHHHHHHHCTTEEESSS-CBSCTTCHHHHHHHHHHHHHHCTTEEEEEE-SSTTHHHHHHHHHHHTTCT
T ss_pred HHHHHHhhCCCCEEEEe-ecCCCCCHHHHHHHHHHHHHhCCCCCEEEE-eCCcchhHHHHHHHhcCCC
Confidence 888888754 444321 112112334444555655443 3455443 4456778899999998875
No 79
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=98.16 E-value=2.1e-05 Score=80.25 Aligned_cols=203 Identities=6% Similarity=-0.090 Sum_probs=124.6
Q ss_pred CceEEEEEEeecCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCchhh
Q 003958 29 PSVVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVT 108 (784)
Q Consensus 29 ~~~i~IG~i~~~~~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s~~ 108 (784)
....+||++.|.+..+......+++.+.++ . |+++. +.++..++....+....++.+++.+||.......
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~gi~~~~~~---~-----g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 75 (288)
T 2qu7_A 6 GRSNIIAFIVPDQNPFFTEVLTEISHECQK---H-----HLHVA--VASSEENEDKQQDLIETFVSQNVSAIILVPVKSK 75 (288)
T ss_dssp -CEEEEEEEESSCCHHHHHHHHHHHHHHGG---G-----TCEEE--EEECTTCHHHHHHHHHHHHHTTEEEEEECCSSSC
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHHHHHH---C-----CCEEE--EEeCCCCHHHHHHHHHHHHHcCccEEEEecCCCC
Confidence 456789999987222223444555555443 1 45554 4566667777667777788889999886443322
Q ss_pred HHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcC--CCcchhHHHHHH
Q 003958 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDD--DHGRNGIAALGD 186 (784)
Q Consensus 109 ~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~--~~g~~~~~~l~~ 186 (784)
...+..+ .++|+|......+. +.+..+.......+..++++|...|.++|++|.... .......+.+++
T Consensus 76 ~~~~~~l---~~iPvV~~~~~~~~------~~~~~V~~d~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~ 146 (288)
T 2qu7_A 76 FQMKREW---LKIPIMTLDRELES------TSLPSITVDNEEAAYIATKRVLESTCKEVGLLLANPNISTTIGRKNGYNK 146 (288)
T ss_dssp CCCCGGG---GGSCEEEESCCCSS------CCCCEEEECHHHHHHHHHHHHHTSSCCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred hHHHHHh---cCCCEEEEecccCC------CCCCEEEECcHHHHHHHHHHHHHcCCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 1222222 78999987543221 223455667777788888988888999999998643 234566788999
Q ss_pred HHhccCcEEEEeecc--CCCC----ChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHHHHcCCCCCCe
Q 003958 187 TLAAKRCRISFKAPL--SVEA----TEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGY 251 (784)
Q Consensus 187 ~l~~~gi~v~~~~~~--~~~~----~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~ 251 (784)
.+++.|+.+.....+ .... +..+-...++++.+.++++|+.. ....+..+++++++.|+..++-
T Consensus 147 ~l~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ai~~~-~d~~a~g~~~al~~~g~~vP~d 216 (288)
T 2qu7_A 147 AISEFDLNVNPSLIHYSDQQLGTNAQIYSGYEATKTLLSKGIKGIVAT-NHLLLLGALQAIKESEKEIKKD 216 (288)
T ss_dssp HHHHTTCCCCGGGEEECCSSCSHHHHHHHHHHHHHHHHHTTCCEEEEC-SHHHHHHHHHHHHHSSCCBTTT
T ss_pred HHHHcCCCCCcceEEeccCCccccCCHHHHHHHHHHHHhcCCCEEEEC-CcHHHHHHHHHHHHhCCCCCCc
Confidence 999988765321111 1111 12222334444333377876654 4456778899999999865543
No 80
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=98.15 E-value=7.8e-05 Score=75.91 Aligned_cols=206 Identities=10% Similarity=-0.001 Sum_probs=127.6
Q ss_pred ceEEEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCchhh
Q 003958 30 SVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVT 108 (784)
Q Consensus 30 ~~i~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s~~ 108 (784)
...+||++.|.. ..+......+++.+.++. |+++.+ .++..++....+....++.+++.+||.......
T Consensus 6 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~ 75 (289)
T 1dbq_A 6 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQK--------GYTLIL--GNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYP 75 (289)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEEECSCCC
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCeEEE--EcCCCChHHHHHHHHHHHhCCCCEEEEEeccCC
Confidence 456899999864 333345667777777663 455544 566677777777777788888988875332221
Q ss_pred HHHHHHhhhc-CCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEc--CCCcchhHHHHH
Q 003958 109 SHVVSHVANE-LQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD--DDHGRNGIAALG 185 (784)
Q Consensus 109 ~~~va~~~~~-~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d--~~~g~~~~~~l~ 185 (784)
. .+...+.. .++|+|......+ +. ++...+.+.....+..++++|...|.++|++|..+ ........+.++
T Consensus 76 ~-~~~~~l~~~~~iPvV~~~~~~~---~~--~~~~~V~~d~~~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~~ 149 (289)
T 1dbq_A 76 E-PLLAMLEEYRHIPMVVMDWGEA---KA--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFM 149 (289)
T ss_dssp H-HHHHHHHHTTTSCEEEEECSSC---CS--SSCEEEEECHHHHHHHHHHHHHHTTCCSEEEECCC------CHHHHHHH
T ss_pred H-HHHHHHHhccCCCEEEEccCCC---cc--CcCCEEEeCcHHHHHHHHHHHHHCCCCeEEEEecCCccccHHHHHHHHH
Confidence 1 22333333 7999998755322 11 12334556677778888898888899999999864 335567788999
Q ss_pred HHHhccCcEEEEeeccCCCCChhHHHHHHHHhhc--CCceEEEEeccCCcHHHHHHHHHHcCCCCCCeE
Q 003958 186 DTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYV 252 (784)
Q Consensus 186 ~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~ 252 (784)
+.+++.|+.+.....+....+..+....++++.+ .++++|+. .....+..+++++++.|+..++-+
T Consensus 150 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~vP~di 217 (289)
T 1dbq_A 150 KAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFC-GGDIMAMGALCAADEMGLRVPQDV 217 (289)
T ss_dssp HHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEE-SCHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHHCCCCCChHHeEeCCCCHHHHHHHHHHHHhCCCCCCEEEE-CCcHHHHHHHHHHHHcCCCCCCce
Confidence 9999988765422222211233334455555543 35677665 344567788999999998755433
No 81
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=98.10 E-value=6e-05 Score=77.15 Aligned_cols=205 Identities=9% Similarity=-0.019 Sum_probs=135.3
Q ss_pred eEEEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEE-ccCchhh
Q 003958 31 VVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAII-GPQDAVT 108 (784)
Q Consensus 31 ~i~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aii-Gp~~s~~ 108 (784)
.++||++.+.. ..+-.....+++.+.++. |+++.+...++..++....+....++.+++.+|| .|.....
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~ 74 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEEL--------KVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTA 74 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHHH--------TCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSST
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHHh--------CcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHH
Confidence 47899999875 334445667777777763 4555544322225888877888888888998886 4554444
Q ss_pred HHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcC--CcEEEEEEEcCC--CcchhHHHH
Q 003958 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYG--WREVIAIYVDDD--HGRNGIAAL 184 (784)
Q Consensus 109 ~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~--w~~v~ii~~d~~--~g~~~~~~l 184 (784)
.......+...+||+|......+.. ...+.+..........+..++++|...+ -++++++..+.. ......+.+
T Consensus 75 ~~~~~~~~~~~giPvV~~~~~~~~~--~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~Gf 152 (297)
T 3rot_A 75 FSKSLQRANKLNIPVIAVDTRPKDK--TKNPYLVFLGSDNLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAYGI 152 (297)
T ss_dssp THHHHHHHHHHTCCEEEESCCCSCT--TTSCCSCEEECCHHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEcCCCccc--cccCcceEEccChHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHHHH
Confidence 4455566777899999876543321 1123445566777788888999988888 899999985433 344667899
Q ss_pred HHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhc--CCceEEEEeccCCcHHHHHHHHHHcCCCCC
Q 003958 185 GDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGT 249 (784)
Q Consensus 185 ~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~ 249 (784)
++.+++.|+++.... .. .........++++.+ .++++|+. .....+..+++++++.|+..|
T Consensus 153 ~~~l~~~g~~~~~~~-~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~vP 215 (297)
T 3rot_A 153 KTILQDKGIFFEELD-VG--TDPNQVQSRVKSYFKIHPETNIIFC-LTSQALDPLGQMLLHPDRYDF 215 (297)
T ss_dssp HHHHHHTTCEEEEEE-CC--SCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHSHHHHTC
T ss_pred HHHHHhcCCeEEEee-cC--CChHHHHHHHHHHHHhCCCCCEEEE-cCCcchHHHHHHHHhcCCccC
Confidence 999999998887544 21 233444455555433 34566544 445567788888988887544
No 82
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=98.09 E-value=0.00013 Score=74.15 Aligned_cols=201 Identities=7% Similarity=-0.017 Sum_probs=128.2
Q ss_pred eEEEEEEeecC---CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCch-
Q 003958 31 VVNIGALLSFS---TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDA- 106 (784)
Q Consensus 31 ~i~IG~i~~~~---~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s- 106 (784)
..+||++.|.. ..+......+++.+.++. |+++.+...|+..++....+....++.+++.+||.....
T Consensus 5 ~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~ 76 (289)
T 3brs_A 5 QYYMICIPKVLDDSSDFWSVLVEGAQMAAKEY--------EIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADY 76 (289)
T ss_dssp CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHH--------TCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCT
T ss_pred CcEEEEEeCCCCCCchHHHHHHHHHHHHHHHc--------CCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCh
Confidence 56799999853 333445566777777663 456655444446677777777778888899988764333
Q ss_pred hhHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHc-C-CcEEEEEEEcCC--CcchhHH
Q 003958 107 VTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHY-G-WREVIAIYVDDD--HGRNGIA 182 (784)
Q Consensus 107 ~~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~-~-w~~v~ii~~d~~--~g~~~~~ 182 (784)
.........+...++|+|......+. .+.+..+.+.....+..++++|... | .++|++|..+.. ......+
T Consensus 77 ~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~~~~~L~~~~G~~~~i~~i~~~~~~~~~~~R~~ 151 (289)
T 3brs_A 77 EKTYDAAKEIKDAGIKLIVIDSGMKQ-----DIADITVATDNIQAGIRIGAVTKNLVRKSGKIGVISFVKNSKTAMDREE 151 (289)
T ss_dssp TTTHHHHTTTGGGTCEEEEESSCCSS-----CCCSEEEECCHHHHHHHHHHHHHHHTSSSCEEEEEESCTTSHHHHHHHH
T ss_pred HHhHHHHHHHHHCCCcEEEECCCCCC-----CcceEEEeeChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHH
Confidence 32223445566689999987543221 1234556677777788888888774 6 999999986432 3456678
Q ss_pred HHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcC--CceEEEEeccCCcHHHHHHHHHHcCCC
Q 003958 183 ALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGML 247 (784)
Q Consensus 183 ~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIvl~~~~~~~~~~~~~a~~~g~~ 247 (784)
.+++.+++.|..+....... .+..+....++++.+. .+++|+. .....+..+++++++.|+.
T Consensus 152 gf~~~l~~~g~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~ 215 (289)
T 3brs_A 152 GLKIGLSDDSNKIEAIYYCD--SNYDKAYDGTVELLTKYPDISVMVG-LNQYSATGAARAIKDMSLE 215 (289)
T ss_dssp HHHHHHGGGGGGEEEEEECT--TCHHHHHHHHHHHHHHCTTEEEEEE-SSHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHhCCCcEEeeecCC--CCHHHHHHHHHHHHHhCCCceEEEE-CCCcchHHHHHHHHhcCCC
Confidence 89999998886543221111 2334444455554432 4566554 4445677889999999976
No 83
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=98.07 E-value=0.00037 Score=71.93 Aligned_cols=196 Identities=10% Similarity=0.023 Sum_probs=122.5
Q ss_pred EEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEe-cCCCCHHHHHHHHHHHHhcCceEEE-ccCchhhH
Q 003958 33 NIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQ-DCNHSGFLALAEALHLMEGQTVAII-GPQDAVTS 109 (784)
Q Consensus 33 ~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~-D~~~~~~~a~~~~~~li~~~v~aii-Gp~~s~~~ 109 (784)
+||++.|.. ..+......+++.+.++. |++ +.+. ++..++....+....++.+++.+|| .|..+...
T Consensus 5 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~--------g~~--~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~ 74 (316)
T 1tjy_A 5 RIAFIPKLVGVGFFTSGGNGAQEAGKAL--------GID--VTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGL 74 (316)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHHHHH--------TCE--EEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTT
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHh--------CCE--EEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHH
Confidence 699998864 333345567777777764 333 4444 4667888888888889999998865 55555443
Q ss_pred HHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHH---cCCcEEEEEEEcC--CCcchhHHHH
Q 003958 110 HVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDH---YGWREVIAIYVDD--DHGRNGIAAL 184 (784)
Q Consensus 110 ~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~---~~w~~v~ii~~d~--~~g~~~~~~l 184 (784)
..+...+...+||+|.+....+ +. ....+.........+..++++|.+ .|.++|++|.... .......+.+
T Consensus 75 ~~~~~~a~~~gipvV~~d~~~~---~~-~~~~~v~~~D~~~~g~~~~~~L~~~~~~g~~~i~~i~g~~~~~~~~~r~~g~ 150 (316)
T 1tjy_A 75 CPALKRAMQRGVKILTWDSDTK---PE-CRSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEA 150 (316)
T ss_dssp HHHHHHHHHTTCEEEEESSCCC---GG-GCSEEEESCCHHHHHHHHHHHHHHHHCSSSEEEEEEESCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHCcCEEEEecCCCC---CC-CceEEEecCCHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCChhHHHHHHHH
Confidence 4455667778999999754321 11 112232245666677778888765 5789999998542 2345667788
Q ss_pred HHHHhcc--CcEEEEeeccCCCCChhHHHHHHHHhhcC--CceEEEEeccCCcHHHHHHHHHHcC
Q 003958 185 GDTLAAK--RCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLG 245 (784)
Q Consensus 185 ~~~l~~~--gi~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIvl~~~~~~~~~~~~~a~~~g 245 (784)
++.+++. ++++.....-. .+..+....++++.+. ++++|+. .....+..+++++++.|
T Consensus 151 ~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~aI~~-~nD~~A~g~~~al~~~G 212 (316)
T 1tjy_A 151 KAKISQEHPGWEIVTTQFGY--NDATKSLQTAEGIIKAYPDLDAIIA-PDANALPAAAQAAENLK 212 (316)
T ss_dssp HHHHHHHCTTEEEEEEEECT--TCHHHHHHHHHHHHHHCSSCCEEEE-CSTTHHHHHHHHHHHTT
T ss_pred HHHHHhhCCCcEEEEeccCC--CCHHHHHHHHHHHHHhCCCCCEEEE-CCCccHHHHHHHHHHcC
Confidence 8888765 55554322212 2333444455554332 4555443 45566888899999988
No 84
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=98.06 E-value=0.00016 Score=73.72 Aligned_cols=200 Identities=15% Similarity=0.006 Sum_probs=130.2
Q ss_pred ceEEEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEE-ccCchh
Q 003958 30 SVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAII-GPQDAV 107 (784)
Q Consensus 30 ~~i~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aii-Gp~~s~ 107 (784)
...+||++.|.. ..+......+++.+.++. |+++ .+.++..++....+....++.+++.+|| .|..+.
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~ 73 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIERL--------GGTA--IALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLD 73 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHHT--------TCEE--EEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEE--EEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh
Confidence 356899999964 333334566666666662 4544 4456677877777777788888999887 455545
Q ss_pred hHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHH--cCCcEEEEEEEcCC--CcchhHHH
Q 003958 108 TSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDH--YGWREVIAIYVDDD--HGRNGIAA 183 (784)
Q Consensus 108 ~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~--~~w~~v~ii~~d~~--~g~~~~~~ 183 (784)
........+...++|+|......+ +.+..........+..++++|.. .|-++|+++..... ......+.
T Consensus 74 ~~~~~~~~~~~~~iPvV~~~~~~~-------~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~g 146 (291)
T 3l49_A 74 VLNPWLQKINDAGIPLFTVDTATP-------HAINNTTSNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQ 146 (291)
T ss_dssp HHHHHHHHHHHTTCCEEEESCCCT-------TCSEEEEECHHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHH
T ss_pred hhHHHHHHHHHCCCcEEEecCCCC-------CcCceEecChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHH
Confidence 555666777788999998755331 12344556677778888888877 89999999975433 23455788
Q ss_pred HHHHHhcc-CcEEEEeeccCCCC-ChhHHHHHHHHhhcC-----CceEEEEeccCCcHHHHHHHHHHcCCC
Q 003958 184 LGDTLAAK-RCRISFKAPLSVEA-TEDEITDLLVKVALT-----ESRIIVVHTHYNRGPVVFHVAQYLGML 247 (784)
Q Consensus 184 l~~~l~~~-gi~v~~~~~~~~~~-~~~d~~~~l~~l~~~-----~~~vIvl~~~~~~~~~~~~~a~~~g~~ 247 (784)
+++.+++. |+++.....+.... +.......++++.+. ++++|+ +.....+..+++++++.|+.
T Consensus 147 f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~ 216 (291)
T 3l49_A 147 MKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTKYPNEGDVGAIW-ACWDVPMIGATQALQAAGRT 216 (291)
T ss_dssp HHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHHCCSTTSCCEEE-ESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHCCCCEEEeeeccCCCCCCHHHHHHHHHHHHHhCCCcCCcCEEE-ECCCchHHHHHHHHHHcCCC
Confidence 99999988 67754333222111 223333444444332 567764 44556677889999999875
No 85
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=98.04 E-value=0.00029 Score=73.32 Aligned_cols=205 Identities=8% Similarity=-0.026 Sum_probs=129.5
Q ss_pred ceEEEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcC--ceEEEccCch
Q 003958 30 SVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQ--TVAIIGPQDA 106 (784)
Q Consensus 30 ~~i~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~--v~aiiGp~~s 106 (784)
...+||++.|.. ..+-.....+++.+.++. |+++ .+.++..++....+....++.++ +.+||.....
T Consensus 4 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~l--~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~ 73 (332)
T 2rjo_A 4 GQTTLACSFRSLTNPYYTAFNKGAQSFAKSV--------GLPY--VPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPND 73 (332)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TCCE--EEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCSS
T ss_pred CccEEEEEecCCCcHHHHHHHHHHHHHHHHc--------CCEE--EEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCCC
Confidence 356899999853 333334556666666652 3444 44566677777667777788888 9998764433
Q ss_pred h-hHHHHHHhhhcCCccEEecccCCCCCCcCCC--CceEeecCChHHHHHHHHHHHHH--cCCcEEEEEEEcC--CCcch
Q 003958 107 V-TSHVVSHVANELQVPLLSFSATDPTLSSLQF--PYFVRTTQSDQYQMAAIAEIVDH--YGWREVIAIYVDD--DHGRN 179 (784)
Q Consensus 107 ~-~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~--p~~~r~~ps~~~~~~ai~~~l~~--~~w~~v~ii~~d~--~~g~~ 179 (784)
. ........+...++|+|......+......+ +.+..+..+....+..++++|.. .|.++|++|.... .....
T Consensus 74 ~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~g~~~~~~~~~ 153 (332)
T 2rjo_A 74 SADARVIVEACSKAGAYVTTIWNKPKDLHPWDYNPNYVAHLSYDGVAYGEETATQLFKSMGGKGGVVALGGIFSNVPAIE 153 (332)
T ss_dssp HHHHHHHHHHHHHHTCEEEEESCCCTTCCGGGGTTTEEEEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCeEEEECCCCCcccchhcccceeEEEccChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHHH
Confidence 3 2223445556679999987654322111111 34556677777788888888877 6999999998643 23456
Q ss_pred hHHHHHHHHhcc-CcEEEEeeccCCCCChhHHHHHHHHhhcC---CceEEEEeccCCcHHHHHHHHHHcCCC
Q 003958 180 GIAALGDTLAAK-RCRISFKAPLSVEATEDEITDLLVKVALT---ESRIIVVHTHYNRGPVVFHVAQYLGML 247 (784)
Q Consensus 180 ~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~d~~~~l~~l~~~---~~~vIvl~~~~~~~~~~~~~a~~~g~~ 247 (784)
..+.+++.+++. |+.+.....-. .+..+....++++.+. ++++|+. .....+..+++++++.|+.
T Consensus 154 R~~Gf~~al~~~pgi~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~aI~~-~nd~~A~g~~~al~~~G~~ 222 (332)
T 2rjo_A 154 RKAGLDAALKKFPGIQLLDFQVAD--WNSQKAFPIMQAWMTRFNSKIKGVWA-ANDDMALGAIEALRAEGLA 222 (332)
T ss_dssp HHHHHHHHHHTCTTEEEEEEEECT--TCHHHHHHHHHHHHHHHGGGEEEEEE-SSHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHhCCCcEEEeeccCC--CCHHHHHHHHHHHHHhcCCCeeEEEE-CCCchHHHHHHHHHHcCCC
Confidence 788899999998 88765432111 2333344455554333 4566554 4445677899999998875
No 86
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=98.02 E-value=0.00026 Score=72.54 Aligned_cols=186 Identities=10% Similarity=0.141 Sum_probs=119.7
Q ss_pred ceEEEEEEeecCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCchhhH
Q 003958 30 SVVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVTS 109 (784)
Q Consensus 30 ~~i~IG~i~~~~~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s~~~ 109 (784)
++.+||++...+..+-.....+++ +.+++.|.+ .|.++.+.+.|+..++.+..+....+.++++.+||..... ..
T Consensus 7 ~t~~IGvi~~~~~p~~~~~~~gi~---~~l~~~Gy~-~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~~-~~ 81 (302)
T 2qh8_A 7 KTAKVAVSQIVEHPALDATRQGLL---DGLKAKGYE-EGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIATP-TA 81 (302)
T ss_dssp CCEEEEEEESSCCHHHHHHHHHHH---HHHHHTTCC-BTTTEEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEESHH-HH
T ss_pred CCcEEEEEEeccChhHHHHHHHHH---HHHHHcCCC-CCCceEEEEecCCCCHHHHHHHHHHHHhCCCCEEEECChH-HH
Confidence 578999884433322223344444 445555554 3778999999999999988888888888899999875432 22
Q ss_pred HHHHHhhhcCCccEEecccCCCCCCc------CCCCceEeecCChHHHHHHHHHHHHHc--CCcEEEEEEEcCC-Ccchh
Q 003958 110 HVVSHVANELQVPLLSFSATDPTLSS------LQFPYFVRTTQSDQYQMAAIAEIVDHY--GWREVIAIYVDDD-HGRNG 180 (784)
Q Consensus 110 ~~va~~~~~~~ip~Is~~a~~~~l~~------~~~p~~~r~~ps~~~~~~ai~~~l~~~--~w~~v~ii~~d~~-~g~~~ 180 (784)
..+.. ...++|+|..+..++...+ ...+++....- ...+...+++|.+. |.++|++|+.... .+...
T Consensus 82 ~~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~~--~~~~~~~~~~l~~~~Pg~~~I~~i~~~~~~~~~~r 157 (302)
T 2qh8_A 82 QALVS--ATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLSD--LSPVEQHVELIKEILPNVKSIGVVYNPGEANAVSL 157 (302)
T ss_dssp HHHHH--HCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEEC--CCCHHHHHHHHHHHSTTCCEEEEEECTTCHHHHHH
T ss_pred HHHHh--cCCCcCEEEEecCCHhhcCccccccCCCCCEEEEEC--CcCHHHHHHHHHHhCCCCcEEEEEecCCCcchHHH
Confidence 33333 3679999987654432110 11234443331 11245566777776 9999999996543 35667
Q ss_pred HHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEec
Q 003958 181 IAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHT 229 (784)
Q Consensus 181 ~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~ 229 (784)
.+.+++.+++.|+.+...... ...+....++++.. ++++|+...
T Consensus 158 ~~g~~~al~~~gi~~~~~~~~----~~~~~~~~~~~l~~-~~dai~~~~ 201 (302)
T 2qh8_A 158 MELLKLSAAKHGIKLVEATAL----KSADVQSATQAIAE-KSDVIYALI 201 (302)
T ss_dssp HHHHHHHHHHTTCEEEEEECS----SGGGHHHHHHHHGG-GCSEEEECS
T ss_pred HHHHHHHHHHcCCEEEEEecC----ChHHHHHHHHHHhc-cCCEEEECC
Confidence 789999999999987654322 23566677777763 678877653
No 87
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=98.02 E-value=0.0003 Score=72.93 Aligned_cols=200 Identities=8% Similarity=0.014 Sum_probs=122.7
Q ss_pred ceEEEEEEeecCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCchhh-
Q 003958 30 SVVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVT- 108 (784)
Q Consensus 30 ~~i~IG~i~~~~~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s~~- 108 (784)
...+||++.|.+..+-.....+++.+.++ . .|+++ .+.++..++....+....++.+++.+||....+..
T Consensus 5 ~~~~Igvi~~~~~~~~~~~~~gi~~~a~~---~----~g~~l--~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 75 (325)
T 2x7x_A 5 PHFRIGVAQCSDDSWRHKMNDEILREAMF---Y----NGVSV--EIRSAGDDNSKQAEDVHYFMDEGVDLLIISANEAAP 75 (325)
T ss_dssp -CCEEEEEESCCSHHHHHHHHHHHHHHTT---S----SSCEE--EEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSHHH
T ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHHHH---c----CCcEE--EEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHH
Confidence 46789999987322222333444444332 2 14544 45566677777777777888889998886544332
Q ss_pred HHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHc--CCcEEEEEEEcCC--CcchhHHHH
Q 003958 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHY--GWREVIAIYVDDD--HGRNGIAAL 184 (784)
Q Consensus 109 ~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~--~w~~v~ii~~d~~--~g~~~~~~l 184 (784)
.......+...++|+|......+ + .+.+..+.+.....+..++++|... |.++|++|..+.. ......+.+
T Consensus 76 ~~~~~~~~~~~~iPvV~~~~~~~---~--~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~Gf 150 (325)
T 2x7x_A 76 MTPIVEEAYQKGIPVILVDRKIL---S--DKYTAYIGADNYEIGRSVGNYIASSLKGKGNIVELTGLSGSTPAMERHQGF 150 (325)
T ss_dssp HHHHHHHHHHTTCCEEEESSCCS---S--SCSSEEEEECHHHHHHHHHHHHHHHTTTEEEEEEEESCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCeEEEeCCCCC---C--cceeEEEecCHHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHH
Confidence 23334555668999998754322 1 1233445566777778888887664 8999999986532 345667889
Q ss_pred HHHHhcc-CcEEEEeeccCCCCChhHHHHHHHHhhc--CCceEEEEeccCCcHHHHHHHHHHcCC
Q 003958 185 GDTLAAK-RCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGM 246 (784)
Q Consensus 185 ~~~l~~~-gi~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~~~~a~~~g~ 246 (784)
++.+++. |+.+.... .. ..+..+-...+.++.+ ..+++|+ +.....+..+++++++.|+
T Consensus 151 ~~al~~~pg~~~~~~~-~~-~~~~~~~~~~~~~ll~~~~~~~aI~-~~nd~~A~g~~~al~~~Gi 212 (325)
T 2x7x_A 151 MAAISKFPDIKLIDKA-DA-AWERGPAEIEMDSMLRRHPKIDAVY-AHNDRIAPGAYQAAKMAGR 212 (325)
T ss_dssp HHHHHTCTEEEEEEEE-EC-TTSHHHHHHHHHHHHHHCSCCCEEE-ESSTTHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCCEEEeee-cC-CCCHHHHHHHHHHHHHhCCCCCEEE-ECCCchHHHHHHHHHHcCC
Confidence 9999988 87765322 11 1223333344444432 3567665 4455667888999999985
No 88
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=98.02 E-value=0.00034 Score=71.16 Aligned_cols=197 Identities=11% Similarity=0.016 Sum_probs=123.4
Q ss_pred EEEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCc-hhhH
Q 003958 32 VNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQD-AVTS 109 (784)
Q Consensus 32 i~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~-s~~~ 109 (784)
.+||++.|.. ..+......+++.++++. |+++ .+.++..++....+....++.+++.+||.... ....
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~ 72 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQL--------GYEA--TIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGS 72 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHT--------TCEE--EEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCTTTT
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEE--EEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHH
Confidence 4799999864 333445667777776652 4554 45566778877777777888889998876433 2322
Q ss_pred HHHHHhhhcCCccEEecccCCCCCCcCCCCceEe-ecCChHHHHHHHHHHHHHc------CCcE--EEEEEEcC--CCcc
Q 003958 110 HVVSHVANELQVPLLSFSATDPTLSSLQFPYFVR-TTQSDQYQMAAIAEIVDHY------GWRE--VIAIYVDD--DHGR 178 (784)
Q Consensus 110 ~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r-~~ps~~~~~~ai~~~l~~~------~w~~--v~ii~~d~--~~g~ 178 (784)
......+...++|+|......+. . +.+.. +..+....+..++++|... |.++ |+++.... ....
T Consensus 73 ~~~~~~~~~~~iPvV~~~~~~~~---~--~~~~~~V~~D~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~~~~ 147 (290)
T 2fn9_A 73 IANVKRAKEAGIPVFCVDRGINA---R--GLAVAQIYSDNYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTW 147 (290)
T ss_dssp HHHHHHHHHTTCCEEEESSCCSC---S--SSSSEEEEECHHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCHHHH
T ss_pred HHHHHHHHHCCCeEEEEecCCCC---C--CceEEEEeCCHHHHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCchHH
Confidence 23344556689999987543221 1 12223 5566667778888887776 8899 66676432 2345
Q ss_pred hhHHHHHHHHhcc-CcEEEEeeccCCCCChhHHHHHHHHhhc--CCceEEEEeccCCcHHHHHHHHHHcCC
Q 003958 179 NGIAALGDTLAAK-RCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGM 246 (784)
Q Consensus 179 ~~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~~~~a~~~g~ 246 (784)
...+.+++.+++. |+.+.....-. .+..+....++++.+ .++++|+. .....+..+++++++.|+
T Consensus 148 ~R~~gf~~~l~~~~g~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~~-~~d~~a~g~~~al~~~g~ 215 (290)
T 2fn9_A 148 DRSNGFHSVVDQYPEFKMVAQQSAE--FDRDTAYKVTEQILQAHPEIKAIWC-GNDAMALGAMKACEAAGR 215 (290)
T ss_dssp HHHHHHHHHHTTSTTEEEEEEEECT--TCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCCEEEEeccCC--CCHHHHHHHHHHHHHhCCCCcEEEE-CCchHHHHHHHHHHHCCC
Confidence 6678899999998 87764322111 223333344444432 35677664 444567788999999887
No 89
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=98.00 E-value=2.9e-05 Score=79.90 Aligned_cols=98 Identities=17% Similarity=0.097 Sum_probs=63.7
Q ss_pred CCCCChHhhhh--CCCceEEe-eCchH-H---H-HHHhhcccCc---cCceeCCCHHHHHHHHhcCCcCCCeeEEEechh
Q 003958 682 SPIKGIDSLRS--SNYPIGYQ-VNSFA-R---N-YLVDELNIDE---SRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRA 750 (784)
Q Consensus 682 ~~i~~~~dl~~--~~~~i~~~-~~~~~-~---~-~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~ 750 (784)
.+|++++||.+ .+.+|++. .++.. + . ++.+..+... -..+...+.++.+.+|.. |++++.+.+..
T Consensus 102 s~i~sl~DL~~~~kgk~ia~~~~gs~~~~l~~~~~l~~~~Gi~~~~~~~~v~~g~~~~~~~al~~----G~vDa~~~~~~ 177 (310)
T 3n5l_A 102 SKIDSLEDMLANAKSLTFGNGDPNSTSGYLVPGYYVFAKNNVDPVKAFKRTLNSSHEVNALAVAN----KQVDVATFNTE 177 (310)
T ss_dssp CSCCSHHHHHHTGGGCEEEECCTTCTTTTHHHHHHTTTTTTCCHHHHSSEEEECCHHHHHHHHHT----TSSSEEEEEHH
T ss_pred CCCCCHHHHhhhcCCCEEEecCCCccHhHHHHHHHHHHHcCCChHHhccccccCCHHHHHHHHHc----CCccEEEecch
Confidence 37999999932 26678874 33322 1 1 1212222221 122323567789999999 89999999999
Q ss_pred hhHHHHcCC----CCeEEeCCccccceEEEEeeCCCC
Q 003958 751 YAELFLSTR----CEFSIVGQVFTKNGWGFVSIVSSF 783 (784)
Q Consensus 751 ~~~~~~~~~----c~l~~~~~~~~~~~~~~~~~k~s~ 783 (784)
.+.+++++. -++.++........+++++||+.|
T Consensus 178 ~~~~~~~~~~~~~~~lrvl~~s~~~p~~~i~~~~~~~ 214 (310)
T 3n5l_A 178 GMERLELTQPEKARQLKVIWKSPLIPGDPLVWRNNLS 214 (310)
T ss_dssp HHHHHHHHCHHHHTTEEEEEEEEEEECCEEEEETTSC
T ss_pred hHHHHHHhCccchhCEEEEEECCCCCCCcEEEECCCC
Confidence 888887764 467777654445567999999853
No 90
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=98.00 E-value=0.00038 Score=70.58 Aligned_cols=203 Identities=10% Similarity=-0.006 Sum_probs=125.2
Q ss_pred CceEEEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCchh
Q 003958 29 PSVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAV 107 (784)
Q Consensus 29 ~~~i~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s~ 107 (784)
....+||++.|.. ..+......+++.+.++ .|+++.+ .++..++....+....++.+++.+||......
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 75 (285)
T 3c3k_A 6 AKTGMLLVMVSNIANPFCAAVVKGIEKTAEK--------NGYRILL--CNTESDLARSRSCLTLLSGKMVDGVITMDALS 75 (285)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHTHHHHTTCCSEEEECCCGG
T ss_pred CCCCEEEEEeCCCCCchHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 3456899999853 33334455666666655 2565544 45566776666666777778999888644332
Q ss_pred hHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCC--CcchhHHHHH
Q 003958 108 TSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIAALG 185 (784)
Q Consensus 108 ~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~ 185 (784)
....+ ..+. .++|+|......+ + +.+..+......-+..+++.|...|.++|++|..... ......+.++
T Consensus 76 ~~~~~-~~l~-~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~ 147 (285)
T 3c3k_A 76 ELPEL-QNII-GAFPWVQCAEYDP---L---STVSSVSIDDVAASEYVVDQLVKSGKKRIALINHDLAYQYAQHRESGYL 147 (285)
T ss_dssp GHHHH-HHHH-TTSSEEEESSCCT---T---SSSCEEECCHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHH
T ss_pred ChHHH-HHHh-cCCCEEEEccccC---C---CCCCEEEEChHHHHHHHHHHHHHcCCCeEEEEeCCCccccHHHHHHHHH
Confidence 22233 3345 8999998754322 1 1233445666667788888888889999999986543 3456678899
Q ss_pred HHHhccCcEEE-EeeccCCCCChhHHHHHHHH--hhcC--CceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEE
Q 003958 186 DTLAAKRCRIS-FKAPLSVEATEDEITDLLVK--VALT--ESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWI 254 (784)
Q Consensus 186 ~~l~~~gi~v~-~~~~~~~~~~~~d~~~~l~~--l~~~--~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi 254 (784)
+.+++.|+.+. ....+ +..+-...+++ +.+. .+++|+. .+...+..+++++++.|+..|+-+-|
T Consensus 148 ~~l~~~g~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~vP~di~v 216 (285)
T 3c3k_A 148 NRLKFHGLDYSRISYAE----NLDYMAGKLATFSLLKSAVKPDAIFA-ISDVLAAGAIQALTESGLSIPQDVAV 216 (285)
T ss_dssp HHHHHHTCCCCEEEECS----SSSHHHHHHHHHHHHSSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHcCCCceEeecCC----ChHHHHHHHHHHHHHcCCCCCeEEEE-CCHHHHHHHHHHHHHcCCCCCCceEE
Confidence 99988887643 11112 12223344455 4333 5677654 44456778899999999876544433
No 91
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=97.99 E-value=0.00023 Score=72.98 Aligned_cols=205 Identities=10% Similarity=-0.005 Sum_probs=126.1
Q ss_pred CCceEEEEEEeecC--CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEe-cCCCCHHHHHHHHHHHHhcCceEEEcc-
Q 003958 28 RPSVVNIGALLSFS--TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQ-DCNHSGFLALAEALHLMEGQTVAIIGP- 103 (784)
Q Consensus 28 ~~~~i~IG~i~~~~--~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~-D~~~~~~~a~~~~~~li~~~v~aiiGp- 103 (784)
.....+||+++|.. ..+-.....+++-+.++. +|+.+.+... ++..++....+....++.+++.+||-.
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~-------~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~ 77 (304)
T 3gbv_A 5 SNKKYTFACLLPKHLEGEYWTDVQKGIREAVTTY-------SDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAP 77 (304)
T ss_dssp --CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHT-------GGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECC
T ss_pred cCCcceEEEEecCCCCchHHHHHHHHHHHHHHHH-------HhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECC
Confidence 34578899999874 333345556666666653 1455666554 345677766667777888899988753
Q ss_pred CchhhHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCC--cEEEEEEEc------CC
Q 003958 104 QDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGW--REVIAIYVD------DD 175 (784)
Q Consensus 104 ~~s~~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w--~~v~ii~~d------~~ 175 (784)
............+...++|+|......+.. +.+-.+.+.....+..++++|...+. ++|++|..+ ..
T Consensus 78 ~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~ 152 (304)
T 3gbv_A 78 TVPQYTKGFTDALNELGIPYIYIDSQIKDA-----PPLAFFGQNSHQSGYFAARMLMLLAVNDREIVIFRKIHEGVIGSN 152 (304)
T ss_dssp SSGGGTHHHHHHHHHHTCCEEEESSCCTTS-----CCSEEEECCHHHHHHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCH
T ss_pred CChHHHHHHHHHHHHCCCeEEEEeCCCCCC-----CceEEEecChHHHHHHHHHHHHHHhCCCCeEEEEEecccCCccch
Confidence 333333444555667799999876533211 12345566777788888899988888 999999843 12
Q ss_pred CcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHh-hc-CCceEEEEeccCCcHHHHHHHHHHcCC
Q 003958 176 HGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKV-AL-TESRIIVVHTHYNRGPVVFHVAQYLGM 246 (784)
Q Consensus 176 ~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l-~~-~~~~vIvl~~~~~~~~~~~~~a~~~g~ 246 (784)
......+.+++.+++.|..+..........+.......+.++ +. .++++|+...+ . +..+++++++.|+
T Consensus 153 ~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d-~-a~g~~~al~~~g~ 223 (304)
T 3gbv_A 153 QQESREIGFRQYMQEHHPACNILELNLHADLNIEDSRMLDDFFREHPDVKHGITFNS-K-VYIIGEYLQQRRK 223 (304)
T ss_dssp HHHHHHHHHHHHHHHHCTTSEEEEEEEESSCSSCHHHHHHHHHHHCTTCCEEEESSS-C-THHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhhCCCcEEEEeeecCCCHHHHHHHHHHHHHhCCCeEEEEEcCc-c-hHHHHHHHHHcCC
Confidence 345667889999988875432221111001111122333333 22 35777666554 4 7789999999997
No 92
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=97.98 E-value=0.00036 Score=71.65 Aligned_cols=204 Identities=10% Similarity=0.032 Sum_probs=126.1
Q ss_pred EEEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccC-chhhH
Q 003958 32 VNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQ-DAVTS 109 (784)
Q Consensus 32 i~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~-~s~~~ 109 (784)
-+||++.|.. ..+......+++.+.++ . |+ +++.+.++..++....+....++.+++.+||-.. .....
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~---~-----g~-~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~ 73 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKA---A-----PD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAA 73 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHT---C-----TT-EEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHh---c-----CC-eEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchh
Confidence 4799999853 22233444555555544 2 44 2445567777887777777778888999887643 33333
Q ss_pred HHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHH------------cCCcEEEEEEEcC--C
Q 003958 110 HVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDH------------YGWREVIAIYVDD--D 175 (784)
Q Consensus 110 ~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~------------~~w~~v~ii~~d~--~ 175 (784)
......+...++|+|......+...-..++.+..+.......+..++++|.. .|-++|++|.... .
T Consensus 74 ~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~~~ 153 (309)
T 2fvy_A 74 GTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHP 153 (309)
T ss_dssp HHHHHHHHTTTCCEEEESSCCCHHHHHTCTTEEEEECCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTCH
T ss_pred HHHHHHHHHCCCcEEEecCCCCcccccccCccEEEecCHHHHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCCCc
Confidence 3444556678999998754322100012345666777777778888888766 6788999998643 2
Q ss_pred CcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcC----CceEEEEeccCCcHHHHHHHHHHcC
Q 003958 176 HGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT----ESRIIVVHTHYNRGPVVFHVAQYLG 245 (784)
Q Consensus 176 ~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~----~~~vIvl~~~~~~~~~~~~~a~~~g 245 (784)
......+.+++.+++.|+.+.....+....+..+-...++++.+. ++++|+. .....+..+++++++.|
T Consensus 154 ~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a~g~~~al~~~g 226 (309)
T 2fvy_A 154 DAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIA-NNDAMAMGAVEALKAHN 226 (309)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEEECTTCHHHHHHHHHHHHTSTTGGGCCEEEE-SSHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhcCCceEEEEEecCCCCHHHHHHHHHHHHHhCCCCCccEEEE-CCchhHHHHHHHHHHcC
Confidence 345667889999999887654322222112333344455555433 4676554 44456778899999987
No 93
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=97.98 E-value=4.1e-05 Score=79.02 Aligned_cols=98 Identities=18% Similarity=0.157 Sum_probs=63.9
Q ss_pred CCCCChHhhhh--CCCceEEe-eCchH-H---HH-HHhhcccCccC--ceeCCCHHHHHHHHhcCCcCCCeeEEEechhh
Q 003958 682 SPIKGIDSLRS--SNYPIGYQ-VNSFA-R---NY-LVDELNIDESR--LVPLNSPEEYAKALKDGPHKGGVAAVVDDRAY 751 (784)
Q Consensus 682 ~~i~~~~dl~~--~~~~i~~~-~~~~~-~---~~-~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~ 751 (784)
.+|++++||.+ .+.+|++. .++.. + .+ +....+.+... .+.+.+.++.+.+|.. |++||.+.+...
T Consensus 112 s~i~sl~DL~~~~kgk~va~~~~gsts~~l~~~~~l~~~~Gi~~~~~~~v~~~~~~~a~~al~~----G~vDa~~~~~~~ 187 (321)
T 3p7i_A 112 SPINNLNDLLAKRKDLTFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRTVNAGHETNALAVAN----KQVDVATNNTEN 187 (321)
T ss_dssp CSCCSHHHHHHTGGGCEEEECCTTCTTTTHHHHHHTTGGGTCCGGGSSEEEECCHHHHHHHHHT----TSSSEEEEEHHH
T ss_pred CCCCCHHHHHhhcCCCEEEeCCCCccHHHHHHHHHHHHHcCCChhHceeeecCCHHHHHHHHHC----CCceEEEechHH
Confidence 37999999921 26678863 33321 1 11 21223333222 2334567889999999 899999999988
Q ss_pred hHHHHcCC----CCeEEeCCccccceEEEEeeCCCC
Q 003958 752 AELFLSTR----CEFSIVGQVFTKNGWGFVSIVSSF 783 (784)
Q Consensus 752 ~~~~~~~~----c~l~~~~~~~~~~~~~~~~~k~s~ 783 (784)
+.+++++. -++.++........+++++||+-|
T Consensus 188 ~~~~~~~~p~~~~~lrvl~~s~~~p~~~i~~~k~~~ 223 (321)
T 3p7i_A 188 LDKLKTSAPEKLKELKVIWKSPLIPGDPIVWRKNLS 223 (321)
T ss_dssp HHTHHHHCHHHHTTEEEEEECSCBCCCEEEEETTSC
T ss_pred HHHHHHhCcchhccEEEEEEcCCCCCCceeeeCCCC
Confidence 88877653 467777655455668999999843
No 94
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=97.97 E-value=0.00025 Score=72.64 Aligned_cols=190 Identities=11% Similarity=0.131 Sum_probs=121.5
Q ss_pred CCCceEEEEEEeecCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCch
Q 003958 27 GRPSVVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDA 106 (784)
Q Consensus 27 ~~~~~i~IG~i~~~~~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s 106 (784)
...+.++||++--.....-.....|++ +++++.|.. .|.++++.+.|.++|+..+...+.+|+.+++.+|++-. +
T Consensus 4 ~~~~~~~igi~q~~~hp~ld~~~~G~~---~~L~~~G~~-~g~nv~~~~~~a~gd~~~~~~~~~~l~~~~~DlIiai~-t 78 (302)
T 3lkv_A 4 IMAKTAKVAVSQIVEHPALDATRQGLL---DGLKAKGYE-EGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIA-T 78 (302)
T ss_dssp ---CCEEEEEEESCCCHHHHHHHHHHH---HHHHHTTCC-BTTTEEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEES-H
T ss_pred hhcCCceEEEEEeecChhHHHHHHHHH---HHHHhhCcc-cCCcEEEEEEeCCCCHHHHHHHHHHHHhcCCcEEEEcC-C
Confidence 345689999885443222234455665 445556654 48889999999999999999999999999999998643 3
Q ss_pred hhHHHHHHhhhcCCccEEecccCCCCCC---c-C--CCCceEeecCChHHHHHHHHHHHHHc--CCcEEEEEEEcCCC-c
Q 003958 107 VTSHVVSHVANELQVPLLSFSATDPTLS---S-L--QFPYFVRTTQSDQYQMAAIAEIVDHY--GWREVIAIYVDDDH-G 177 (784)
Q Consensus 107 ~~~~~va~~~~~~~ip~Is~~a~~~~l~---~-~--~~p~~~r~~ps~~~~~~ai~~~l~~~--~w~~v~ii~~d~~~-g 177 (784)
..+.+++. ...++|+|..+.++|.-. + . .-+++.-+. +.......++++++. +-++|++||...+- .
T Consensus 79 ~aa~a~~~--~~~~iPVVf~~v~dp~~~~l~~~~~~~g~nvtGv~--~~~~~~~~l~l~~~l~P~~k~vgvi~~~~~~~s 154 (302)
T 3lkv_A 79 PTAQALVS--ATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLS--DLSPVEQHVELIKEILPNVKSIGVVYNPGEANA 154 (302)
T ss_dssp HHHHHHHH--HCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEE--CCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHH
T ss_pred HHHHHHHh--hcCCCCeEEEecCCcchhhhcccccCCCCcEEEEE--CCcCHHHHHHHHHHhCCCCCEEEEEeCCCcccH
Confidence 34444443 345899987666665422 2 1 123444332 111133445666554 68999999976543 3
Q ss_pred chhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEecc
Q 003958 178 RNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH 230 (784)
Q Consensus 178 ~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~ 230 (784)
....+.+++.+++.|+++.... .. ...++...++.+. .+.+++++..+
T Consensus 155 ~~~~~~~~~~~~~~g~~~v~~~-~~---~~~~~~~~~~~l~-~~~d~i~~~~d 202 (302)
T 3lkv_A 155 VSLMELLKLSAAKHGIKLVEAT-AL---KSADVQSATQAIA-EKSDVIYALID 202 (302)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEE-CS---SGGGHHHHHHHHH-TTCSEEEECSC
T ss_pred HHHHHHHHHHHHHcCCEEEEEe-cC---ChHHHHHHHHhcc-CCeeEEEEeCC
Confidence 4557788888999999886543 22 3456666666665 45777776544
No 95
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=97.96 E-value=0.00011 Score=75.34 Aligned_cols=205 Identities=6% Similarity=-0.091 Sum_probs=128.1
Q ss_pred ceEEEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEc-cCchh
Q 003958 30 SVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIG-PQDAV 107 (784)
Q Consensus 30 ~~i~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiG-p~~s~ 107 (784)
.+.+||++.|.. ..+-.....+++-+.++. |+++.+...+...++....+....++.+++.+||- |....
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~ 75 (304)
T 3o1i_D 4 SDEKICAIYPHLKDSYWLSVNYGMVSEAEKQ--------GVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPH 75 (304)
T ss_dssp -CCEEEEEESCSCSHHHHHHHHHHHHHHHHH--------TCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHHc--------CCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh
Confidence 467899999864 323334556666666653 45555544333338888777888888888988874 44333
Q ss_pred hHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcC-----CcEEEEEEEcC--CCcchh
Q 003958 108 TSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYG-----WREVIAIYVDD--DHGRNG 180 (784)
Q Consensus 108 ~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~-----w~~v~ii~~d~--~~g~~~ 180 (784)
........+. .++|+|......+.......+.+..+.+.....+..++++|...+ -++|+++.... ......
T Consensus 76 ~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~~~~i~~i~~~~~~~~~~~R 154 (304)
T 3o1i_D 76 AYEHNLKSWV-GNTPVFATVNQLDLDEEQSTLLKGEVGVDWYWMGYEAGKYLAERHPKGSGKTNIALLLGPRTRGGTKPV 154 (304)
T ss_dssp SSTTTHHHHT-TTSCEEECSSCCCCCTTTGGGEEEECCCCHHHHHHHHHHHHHTTSBTTTCCEEEEEECCCC-----CHH
T ss_pred HHHHHHHHHc-CCCCEEEecCCCcccccCCCceEEEEecCHHHHHHHHHHHHHHhcccCCCCCEEEEEECCCCcchHHHH
Confidence 2223334456 899999875433211111224456667777778888889988888 88999997543 344567
Q ss_pred HHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHh-hcCCceEEEEeccCCcHHHHHHHHHHcCCC
Q 003958 181 IAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKV-ALTESRIIVVHTHYNRGPVVFHVAQYLGML 247 (784)
Q Consensus 181 ~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l-~~~~~~vIvl~~~~~~~~~~~~~a~~~g~~ 247 (784)
.+.+++.+++.|+.+.... ....+.......+.++ +...+++ | ++....+..+++++++.|+.
T Consensus 155 ~~gf~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~a-i-~~~d~~a~g~~~al~~~g~~ 218 (304)
T 3o1i_D 155 TTGFYEAIKNSDIHIVDSF--WADNDKELQRNLVQRVIDMGNIDY-I-VGSAVAIEAAISELRSADKT 218 (304)
T ss_dssp HHHHHHTTTTBTEEEEECC--CCCSCHHHHHHHHHHHHHHSCCSE-E-EECHHHHHHHHHHHTTTTCG
T ss_pred HHHHHHHHhcCCCEEEEee--cCCCcHHHHHHHHHHHHcCCCCCE-E-EecCcchHHHHHHHHhcCCC
Confidence 8999999999998876533 2112333333333333 2345677 4 44556778899999998875
No 96
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=97.94 E-value=0.0004 Score=70.72 Aligned_cols=205 Identities=12% Similarity=0.037 Sum_probs=127.4
Q ss_pred CceEEEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCchh
Q 003958 29 PSVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAV 107 (784)
Q Consensus 29 ~~~i~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s~ 107 (784)
....+||++.|.. ..+-.....+++.+.++ .|+++. +.++..++....+....++.+++.+||......
T Consensus 18 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~ 87 (293)
T 2iks_A 18 GRTRSIGLVIPDLENTSYTRIANYLERQARQ--------RGYQLL--IACSEDQPDNEMRCIEHLLQRQVDAIIVSTSLP 87 (293)
T ss_dssp CCCCEEEEEESCSCSHHHHHHHHHHHHHHHH--------TTCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCSSC
T ss_pred CCCcEEEEEeCCCcCcHHHHHHHHHHHHHHH--------CCCEEE--EEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 4467899999853 32333445566655554 155554 445666777666667777788899887643332
Q ss_pred hHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCC--CcchhHHHHH
Q 003958 108 TSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIAALG 185 (784)
Q Consensus 108 ~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~ 185 (784)
....+...+...++|+|......+ + +.+..+...+...+..+++.|...|.++|++|..... ......+.++
T Consensus 88 ~~~~~~~~~~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 161 (293)
T 2iks_A 88 PEHPFYQRWANDPFPIVALDRALD---R---EHFTSVVGADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGFR 161 (293)
T ss_dssp TTCHHHHTTTTSSSCEEEEESCCC---T---TTCEEEEECHHHHHHHHHHHHHTSCCSSEEEEEECTTSHHHHHHHHHHH
T ss_pred CcHHHHHHHHhCCCCEEEECCccC---c---CCCCEEEecCHHHHHHHHHHHHHCCCCEEEEEecCcccccHHHHHHHHH
Confidence 222233455668999998754322 1 2233455666777778888888889999999987533 3456678899
Q ss_pred HHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcC--CceEEEEeccCCcHHHHHHHHHHcCCCCCCeE
Q 003958 186 DTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYV 252 (784)
Q Consensus 186 ~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~ 252 (784)
+.+++.|+...... ....+..+-...++++.+. .+++|+. .....+..+++++++.|+..++-+
T Consensus 162 ~~l~~~g~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di 227 (293)
T 2iks_A 162 TAWKDDPREVHFLY--ANSYEREAAAQLFEKWLETHPMPQALFT-TSFALLQGVMDVTLRRDGKLPSDL 227 (293)
T ss_dssp HHHTTCCCCEEEEE--ESSSCHHHHHHHHHHHTTTSCCCSEEEE-SSHHHHHHHHHHHHHHHSSCCSSC
T ss_pred HHHHHcCCCccEEE--cCCCChhhHHHHHHHHHhcCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCCce
Confidence 99999886432221 1112333344455555433 4666554 344557788999999998755433
No 97
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=97.93 E-value=0.00028 Score=71.82 Aligned_cols=206 Identities=10% Similarity=0.021 Sum_probs=127.0
Q ss_pred CCceEEEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCch
Q 003958 28 RPSVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDA 106 (784)
Q Consensus 28 ~~~~i~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s 106 (784)
.....+||++.|.. ..+-.....+++.+.++ .|+++.+ .++..++....+....++.+++.+||-....
T Consensus 13 ~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 82 (289)
T 2fep_A 13 SKKTTTVGVIIPDISSIFYSELARGIEDIATM--------YKYNIIL--SNSDQNMEKELHLLNTMLGKQVDGIVFMGGN 82 (289)
T ss_dssp ---CCEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred cCCCCeEEEEeCCCCCchHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 34567899999863 33333455666666554 2565544 4666677766667777788899988753322
Q ss_pred hhHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcC-C--CcchhHHH
Q 003958 107 VTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDD-D--HGRNGIAA 183 (784)
Q Consensus 107 ~~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~-~--~g~~~~~~ 183 (784)
.....+ ..+...++|+|......+ + +.+..+......-+..++++|...|.++|++|.... . ......+.
T Consensus 83 ~~~~~~-~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~G 155 (289)
T 2fep_A 83 ITDEHV-AEFKRSPVPIVLAASVEE---Q---EETPSVAIDYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQG 155 (289)
T ss_dssp CCHHHH-HHHHHSSSCEEEESCCCT---T---CCSCEEECCHHHHHHHHHHHHHHTTCSSEEEEESCTTSHHHHTTHHHH
T ss_pred CCHHHH-HHHHhcCCCEEEEccccC---C---CCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEeCCccccccHHHHHHH
Confidence 222223 334568999998754322 1 123345566677788888998888999999998653 2 34566888
Q ss_pred HHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhc--CCceEEEEeccCCcHHHHHHHHHHcCCCCCCe
Q 003958 184 LGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGY 251 (784)
Q Consensus 184 l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~ 251 (784)
+++.+++.|+.+.....+....+..+-...++++.+ ..+++|+. .+...+..+++++++.|+..++-
T Consensus 156 f~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~d 224 (289)
T 2fep_A 156 YKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKKPTAILS-ATDEMALGIIHAAQDQGLSIPED 224 (289)
T ss_dssp HHHHHHHTTCCCCGGGEEECCSCHHHHHHHHHHHTTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTT
T ss_pred HHHHHHHcCCCCChheEeeCCCCHHHHHHHHHHHHcCCCCCCEEEE-CCHHHHHHHHHHHHHcCCCCCCC
Confidence 999999988764321111111233334455555544 35676654 44456778999999999875543
No 98
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=97.93 E-value=0.00015 Score=73.92 Aligned_cols=205 Identities=7% Similarity=-0.066 Sum_probs=122.7
Q ss_pred ceEEEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHH---HHHHHHhcCceEEEccCc
Q 003958 30 SVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALA---EALHLMEGQTVAIIGPQD 105 (784)
Q Consensus 30 ~~i~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~---~~~~li~~~v~aiiGp~~ 105 (784)
...+||++.|.. ..+......+++.+.++ .|+++.+ .++..++....+ ....++.+++.+||....
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 76 (290)
T 2rgy_A 7 QLGIIGLFVPTFFGSYYGTILKQTDLELRA--------VHRHVVV--ATGCGESTPREQALEAVRFLIGRDCDGVVVISH 76 (290)
T ss_dssp -CCEEEEECSCSCSHHHHHHHHHHHHHHHH--------TTCEEEE--ECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHH--------CCCEEEE--EeCCCchhhhhhHHHHHHHHHhcCccEEEEecC
Confidence 456899999864 33333455666666655 2565544 454455544444 556677778988875433
Q ss_pred hhhHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCC--CcchhHHH
Q 003958 106 AVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIAA 183 (784)
Q Consensus 106 s~~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~ 183 (784)
.... .....+...++|+|......+. +.+..+......-+..++++|...|.++|++|..+.. ......+.
T Consensus 77 ~~~~-~~~~~l~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 149 (290)
T 2rgy_A 77 DLHD-EDLDELHRMHPKMVFLNRAFDA------LPDASFCPDHRRGGELAAATLIEHGHRKLAVISGPFTASDNVERLDG 149 (290)
T ss_dssp SSCH-HHHHHHHHHCSSEEEESSCCTT------SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEEESCTTCHHHHHHHHH
T ss_pred CCCH-HHHHHHhhcCCCEEEEccccCC------CCCCEEEeCcHHHHHHHHHHHHHCCCceEEEEeCCCCCccHHHHHHH
Confidence 2222 2233445579999987543221 1233455666677788888888889999999986532 34556788
Q ss_pred HHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhc--CCceEEEEeccCCcHHHHHHHHHHcCCCCCCeE
Q 003958 184 LGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYV 252 (784)
Q Consensus 184 l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~ 252 (784)
+++.+++.|+.+.....+....+..+-...++++.+ ..+++|+. .....+..+++++++.|+..|+-+
T Consensus 150 f~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~di 219 (290)
T 2rgy_A 150 FFDELARHGIARDSVPLIESDFSPEGGYAATCQLLESKAPFTGLFC-ANDTMAVSALARFQQLGISVPGDV 219 (290)
T ss_dssp HHHHHHTTTCCGGGSCEEECCSSHHHHHHHHHHHHHHTCCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHHHHcCCCCCcccEEecCCChhHHHHHHHHHHhCCCCCcEEEE-CCcHHHHHHHHHHHHcCCCCCCce
Confidence 999999988654321111111122333334444332 35777664 444567789999999998755433
No 99
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=97.92 E-value=6.1e-05 Score=76.12 Aligned_cols=201 Identities=11% Similarity=0.006 Sum_probs=113.4
Q ss_pred EEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCchhhHHH
Q 003958 33 NIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVTSHV 111 (784)
Q Consensus 33 ~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s~~~~~ 111 (784)
+||++.|.. ..+-.....+++-+.++ . |+++. +.++..++....+....++.+++.+||........ .
T Consensus 1 ~Igvi~~~~~~~~~~~~~~gi~~~~~~---~-----g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~ 69 (276)
T 2h0a_A 1 TVSVLLPFVATEFYRRLVEGIEGVLLE---Q-----RYDLA--LFPILSLARLKRYLENTTLAYLTDGLILASYDLTE-R 69 (276)
T ss_dssp CEEEEECCSCCHHHHHHHHHHHHHHGG---G-----TCEEE--ECCCCSCCCCC---------CCCSEEEEESCCCC---
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHH---C-----CCEEE--EEeCCCchhhHHHHHHHHHhCCCCEEEEecCCCCH-H
Confidence 378888753 22223344555544443 2 45443 44554444433444556667788888764333222 3
Q ss_pred HHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcC-C-----Ccc-hhHHHH
Q 003958 112 VSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDD-D-----HGR-NGIAAL 184 (784)
Q Consensus 112 va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~-~-----~g~-~~~~~l 184 (784)
....+...++|+|......+ + +..+.......+..++++|.+.|.++|++|..+. . ... ...+.+
T Consensus 70 ~~~~~~~~~iPvV~~~~~~~-------~-~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~~~~~~R~~gf 141 (276)
T 2h0a_A 70 FEEGRLPTERPVVLVDAQNP-------R-YDSVYLDNRLGGRLAGAYLARFPGPIFAIAVEEEPDRAFRRTVFAERMAGF 141 (276)
T ss_dssp ----CCSCSSCEEEESSCCT-------T-SEEEEECSHHHHHHHHHHHTTSSSCEEEEEECCSCCC---CCHHHHHHHHH
T ss_pred HHHHHhhcCCCEEEEeccCC-------C-CCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCcccccccchhHHHHHHHH
Confidence 33455668999998754321 1 3455567777788888998888999999998654 2 445 678899
Q ss_pred HHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcC--CceEEEEeccCCcHHHHHHHHHHcCCCCCCeEE
Q 003958 185 GDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVW 253 (784)
Q Consensus 185 ~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~w 253 (784)
++.+++.|+.+.....+....+..+-...+.++.+. .+++|+ +.+...+..+++++++.|+..++-+-
T Consensus 142 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~ 211 (276)
T 2h0a_A 142 QEALKEAGRPFSPDRLYITRHSQEGGRLALRHFLEKASPPLNVF-AGADQVALGVLEEAVRLGLTPGRDVR 211 (276)
T ss_dssp HHHHHHTTCCCCGGGEEEECSSHHHHHHHHHHHHTTCCSSEEEE-CSSHHHHHHHHHHHHTTSCTTTTSEE
T ss_pred HHHHHHcCCCCChHHeeecCCChHHHHHHHHHHHhCCCCCCEEE-ECCcHHHHHHHHHHHHcCCCCCCCeE
Confidence 999999887543211111111233344455555443 467665 45556677899999999987554443
No 100
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=97.91 E-value=0.00072 Score=68.95 Aligned_cols=200 Identities=12% Similarity=0.109 Sum_probs=124.0
Q ss_pred eEEEEEEeecCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCchhhHH
Q 003958 31 VVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVTSH 110 (784)
Q Consensus 31 ~i~IG~i~~~~~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s~~~~ 110 (784)
..+||++-..+..+-.....+++-+++ +.|. .|.++.+.+.|+..++.+.......+.++++.+||..... ...
T Consensus 2 ~~~Igvi~~~~~p~~~~i~~gi~~~l~---~~gy--~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~~-~~~ 75 (295)
T 3lft_A 2 NAKIGVLQFVSHPSLDLIYKGIQDGLA---EEGY--KDDQVKIDFMNSEGDQSKVATMSKQLVANGNDLVVGIATP-AAQ 75 (295)
T ss_dssp CEEEEEEECSCCHHHHHHHHHHHHHHH---HTTC--CGGGEEEEEEECTTCHHHHHHHHHHHTTSSCSEEEEESHH-HHH
T ss_pred ceEEEEEEccCChhHHHHHHHHHHHHH---HcCC--CCCceEEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCcH-HHH
Confidence 457998832232222234445444444 3432 3568888889999999988888888888899999875432 222
Q ss_pred HHHHhhhcCCccEEecccCCCCCC---c---CCCCceEeecCChHHHHHHHHHHHHHc--CCcEEEEEEEcCCC-cchhH
Q 003958 111 VVSHVANELQVPLLSFSATDPTLS---S---LQFPYFVRTTQSDQYQMAAIAEIVDHY--GWREVIAIYVDDDH-GRNGI 181 (784)
Q Consensus 111 ~va~~~~~~~ip~Is~~a~~~~l~---~---~~~p~~~r~~ps~~~~~~ai~~~l~~~--~w~~v~ii~~d~~~-g~~~~ 181 (784)
.+.. ...++|+|..+..++... + ...+++.... +..-+...+++|.+. |.++|++|+..... ++...
T Consensus 76 ~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~--~~~~~~~~~~~l~~~~pg~~~I~~i~~~~~~~~~~r~ 151 (295)
T 3lft_A 76 GLAS--ATKDLPVIMAAITDPIGANLVKDLKKPGGNVTGVS--DHNPAQQQVELIKALTPNVKTIGALYSSSEDNSKTQV 151 (295)
T ss_dssp HHHH--HCSSSCEEEESCSCTTTTTSCSCSSCCCSSEEEEE--ECCCHHHHHHHHHHHCTTCCEEEEEEETTCHHHHHHH
T ss_pred HHHH--cCCCCCEEEEeccChhhcCccccccCCCCcEEEEE--CCccHHHHHHHHHHhCCCCcEEEEEeCCCCcchHHHH
Confidence 3322 247999998654443221 1 0112333332 222255666777776 89999999976542 45667
Q ss_pred HHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHHHHcCC
Q 003958 182 AALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGM 246 (784)
Q Consensus 182 ~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a~~~g~ 246 (784)
+.+++.+++.|+.+...... +..+....++++.+ ++++|+... ...+...++++.+.+.
T Consensus 152 ~g~~~al~~~gi~~~~~~~~----~~~~~~~~~~~l~~-~~dai~~~~-D~~a~g~~~~l~~~~~ 210 (295)
T 3lft_A 152 EEFKAYAEKAGLTVETFAVP----STNEIASTVTVMTS-KVDAIWVPI-DNTIASGFPTVVSSNQ 210 (295)
T ss_dssp HHHHHHHHHTTCEEEEEEES----SGGGHHHHHHHHTT-TCSEEEECS-CHHHHHTHHHHHHHTT
T ss_pred HHHHHHHHHcCCEEEEEecC----CHHHHHHHHHHHHh-cCCEEEECC-chhHHHHHHHHHHHHH
Confidence 88999999999987654322 23456677777763 688877653 3344555666766663
No 101
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=97.91 E-value=0.00035 Score=72.89 Aligned_cols=207 Identities=11% Similarity=0.014 Sum_probs=132.0
Q ss_pred CceEEEEEEeec---CCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCc
Q 003958 29 PSVVNIGALLSF---STNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQD 105 (784)
Q Consensus 29 ~~~i~IG~i~~~---~~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~ 105 (784)
...-+||++.|. +..+-.....+++.+.++. |+.+ .+.++..++....+....++.+++.+||-...
T Consensus 59 ~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 128 (338)
T 3dbi_A 59 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEK--------GRQL--LLADGKHSAEEERQAIQYLLDLRCDAIMIYPR 128 (338)
T ss_dssp -CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHT--------TCEE--EEEECTTSHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCCCEEEEEecCCcccChhHHHHHHHHHHHHHHC--------CCEE--EEEeCCCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 346789999986 2333334555666555552 4554 44566677777666777788889998876443
Q ss_pred hhhHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcC--CCcchhHHH
Q 003958 106 AVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDD--DHGRNGIAA 183 (784)
Q Consensus 106 s~~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~--~~g~~~~~~ 183 (784)
......+...+...++|+|..+...+. +.+.........-+..+++.|...|.++|++|.... .......+.
T Consensus 129 ~~~~~~~~~~~~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 202 (338)
T 3dbi_A 129 FLSVDEIDDIIDAHSQPIMVLNRRLRK------NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAG 202 (338)
T ss_dssp SSCHHHHHHHHHHCSSCEEEESSCCSS------SGGGEECBCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHH
T ss_pred CCChHHHHHHHHcCCCCEEEEcCCCCC------CCCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHH
Confidence 333345667788889999987543321 122335566677778888888889999999998643 234566788
Q ss_pred HHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhc--CCceEEEEeccCCcHHHHHHHHHHcCCCCCCeE
Q 003958 184 LGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYV 252 (784)
Q Consensus 184 l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~ 252 (784)
+++.+++.|+.+.....+....+..+-...+.++.+ ..+++|+. .+...+..+++++++.|+..|+-+
T Consensus 203 f~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~di 272 (338)
T 3dbi_A 203 YKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALVA-SNDDMAIGAMKALHERGVAVPEQV 272 (338)
T ss_dssp HHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHHHTTCCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHHHHCCCCCCcceEEeCCCCHHHHHHHHHHHHcCCCCCeEEEE-CChHHHHHHHHHHHHcCCCCCCCe
Confidence 999999998765422222211233333344455432 45666654 444567789999999998765443
No 102
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=97.90 E-value=0.00083 Score=70.41 Aligned_cols=208 Identities=10% Similarity=0.039 Sum_probs=131.8
Q ss_pred eEEEEEEeecCC--cchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHh--cCceEEEccCch
Q 003958 31 VVNIGALLSFST--NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLME--GQTVAIIGPQDA 106 (784)
Q Consensus 31 ~i~IG~i~~~~~--~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~--~~v~aiiGp~~s 106 (784)
..+||++.|... .+-.....+++-+.++. |+++.+ .++..++....+....++. +++.+||-....
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~--------g~~~~~--~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~ 72 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDL--------GLDLRI--LYAERDPQNTLQQARELFQGRDKPDYLMLVNEQ 72 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHHHSSSCCSEEEEECCS
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHc--------CCeEEE--EECCCCHHHHHHHHHHHHhcCCCCCEEEEeCch
Confidence 468999999752 34445667777777664 455544 4667788887888888888 588887754444
Q ss_pred hhHHHHHHhhhcCCccEEecccCCCCCCc-------CCCC-ceEeecCChHHHHHHHHHHHHHcC------C-cEEEEEE
Q 003958 107 VTSHVVSHVANELQVPLLSFSATDPTLSS-------LQFP-YFVRTTQSDQYQMAAIAEIVDHYG------W-REVIAIY 171 (784)
Q Consensus 107 ~~~~~va~~~~~~~ip~Is~~a~~~~l~~-------~~~p-~~~r~~ps~~~~~~ai~~~l~~~~------w-~~v~ii~ 171 (784)
.....+...+...+||+|......+.... ..|+ ++..+.+.....+..+++.|...+ - ++|++|.
T Consensus 73 ~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~ 152 (350)
T 3h75_A 73 YVAPQILRLSQGSGIKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFS 152 (350)
T ss_dssp SHHHHHHHHHTTSCCEEEEEESCCCTTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEE
T ss_pred hhHHHHHHHHHhCCCcEEEEcCCCChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEe
Confidence 44555667778899999997655433210 1122 255666777777888888877665 4 7999998
Q ss_pred EcCC--CcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcC--CceEEEEeccCCcHHHHHHHHHHcCCC
Q 003958 172 VDDD--HGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGML 247 (784)
Q Consensus 172 ~d~~--~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIvl~~~~~~~~~~~~~a~~~g~~ 247 (784)
.... ......+.+++.+++.|. +.....+....+.......++++.+. ++++|+ +.....+..+++++++.|+.
T Consensus 153 g~~~~~~~~~R~~Gf~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~aI~-~~~d~~a~g~~~al~~~G~~ 230 (350)
T 3h75_A 153 GLKVTPAAQLRERGLRRALAEHPQ-VHLRQLVYGEWNRERAYRQAQQLLKRYPKTQLVW-SANDEMALGAMQAARELGRK 230 (350)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHCTT-EEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEE-ESSHHHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCC-eEEEEEeeCCCcHHHHHHHHHHHHHhCCCcCEEE-ECChHHHHHHHHHHHHcCCC
Confidence 5432 344567889999999886 22222222112334444445554333 345443 34455677899999999987
Q ss_pred CCC
Q 003958 248 GTG 250 (784)
Q Consensus 248 ~~~ 250 (784)
.++
T Consensus 231 vP~ 233 (350)
T 3h75_A 231 PGT 233 (350)
T ss_dssp BTT
T ss_pred CCC
Confidence 554
No 103
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=97.90 E-value=0.00027 Score=73.54 Aligned_cols=208 Identities=8% Similarity=0.004 Sum_probs=126.5
Q ss_pred CceEEEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCchh
Q 003958 29 PSVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAV 107 (784)
Q Consensus 29 ~~~i~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s~ 107 (784)
....+||++.|.. ..+......+++.+.++ .|+++.+ .++..++....+....++.+++.+||......
T Consensus 61 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 130 (332)
T 2o20_A 61 KRTTTVGVILPTITSTYFAAITRGVDDIASM--------YKYNMIL--ANSDNDVEKEEKVLETFLSKQVDGIVYMGSSL 130 (332)
T ss_dssp -CCCEEEEEESCTTCHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECSSCC
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHH--------cCCEEEE--EECCCChHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 3467899999853 33333455666666555 2565544 45666776666666777778999887643222
Q ss_pred hHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCC--CcchhHHHHH
Q 003958 108 TSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIAALG 185 (784)
Q Consensus 108 ~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~ 185 (784)
....+ ..+...++|+|......+ + +.+......+..-+..++++|...|.++|++|..+.. ......+.++
T Consensus 131 ~~~~~-~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 203 (332)
T 2o20_A 131 DEKIR-TSLKNSRTPVVLVGTIDG---D---KEIPSVNIDYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQ 203 (332)
T ss_dssp CHHHH-HHHHHHCCCEEEESCCCT---T---SCSCEEECCHHHHHHHHHHHHHHTTCSSEEEECSCTTSHHHHHHHHHHH
T ss_pred CHHHH-HHHHhCCCCEEEEccccC---C---CCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHHHH
Confidence 22223 334467999998754322 1 1223345666666778888888889999999986532 3456678899
Q ss_pred HHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEE
Q 003958 186 DTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWI 254 (784)
Q Consensus 186 ~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi 254 (784)
+.+++.|+.+.....+....+..+-...++++.+..+++|+. .....+..+++++++.|+..|+-+-+
T Consensus 204 ~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~disv 271 (332)
T 2o20_A 204 EALLEANIEFDENLVFEGNYSYEQGKALAERLLERGATSAVV-SHDTVAVGLLSAMMDKGVKVPEDFEI 271 (332)
T ss_dssp HHHHHTTCCCCGGGEECSCCSHHHHHHHHHHHHHTTCCEEEE-SCHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHhccCCCEEEE-CChHHHHHHHHHHHHcCCCCccCEEE
Confidence 999999876542111221112232333444433237787665 34456778999999999876544433
No 104
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=97.90 E-value=0.00077 Score=69.02 Aligned_cols=210 Identities=12% Similarity=0.002 Sum_probs=131.2
Q ss_pred eEEEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEc-cCchhh
Q 003958 31 VVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIG-PQDAVT 108 (784)
Q Consensus 31 ~i~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiG-p~~s~~ 108 (784)
.-+||++.+.. ..+-.....+++.+.++. |+++.+. .++..++....+....++.+++.+||- |.....
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~-~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 74 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQAL--------NVTVEYR-GAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVE 74 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHH--------TCEEEEE-ECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTT
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHc--------CCEEEEe-CCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHH
Confidence 45788888765 333345567777777763 4555442 466678887777788888889998874 333333
Q ss_pred HHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHc--CCcEEEEEEEcCC-CcchhHHHHH
Q 003958 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHY--GWREVIAIYVDDD-HGRNGIAALG 185 (784)
Q Consensus 109 ~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~--~w~~v~ii~~d~~-~g~~~~~~l~ 185 (784)
.......+...++|+|......+. . +.+..+.+.....+..+++.|... |-++|+++..... ......+.++
T Consensus 75 ~~~~~~~~~~~~iPvV~~~~~~~~---~--~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~gf~ 149 (305)
T 3g1w_A 75 LTDTINKAVDAGIPIVLFDSGAPD---S--HAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVITLPNQLNHQERTTGFK 149 (305)
T ss_dssp THHHHHHHHHTTCCEEEESSCCTT---S--CCSCEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcEEEECCCCCC---C--ceeEEECcCHHHHHHHHHHHHHHHhCCCcEEEEEeCCCcccHHHHHHHHH
Confidence 334455667789999987654321 1 123445677777888888888887 9999999985432 2335577888
Q ss_pred HHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcC--CceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEEec
Q 003958 186 DTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIAT 256 (784)
Q Consensus 186 ~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~ 256 (784)
+.+++.|..+..........+..+....+.++.+. ++++|+ +.....+..+++++++.|+. .+...++.
T Consensus 150 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~-~di~vig~ 220 (305)
T 3g1w_A 150 ETLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLAGIF-ATEANGGVGVGDAVRLESRA-GEIQIISF 220 (305)
T ss_dssp HHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEE-ESSHHHHHHHHHHHHHTTCT-TTSEEEEE
T ss_pred HHHHhhCCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCceEEE-ECCCcchhhHHHHHHhcCCC-CCeEEEEe
Confidence 88888766544332222122334444445554333 455544 34445678899999999976 33344443
No 105
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=97.90 E-value=0.00035 Score=71.77 Aligned_cols=205 Identities=10% Similarity=0.031 Sum_probs=125.2
Q ss_pred eEEEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCchhh-
Q 003958 31 VVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVT- 108 (784)
Q Consensus 31 ~i~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s~~- 108 (784)
+++||++.|.. ..+......+++.+.++. |+++. +.++..++....+....++.+++.+||.......
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~l~--~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 71 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAEKR--------GITLK--IADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATG 71 (306)
T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHHHH--------TCEEE--EEECTTCHHHHHHHHHHHHHHTCSEEEECCSSSSS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHHc--------CCEEE--EeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhh
Confidence 57899999974 333445566666666653 45544 4566667777666777787889998876443322
Q ss_pred HHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcC---CcEEEEEEEcCC--CcchhHHH
Q 003958 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYG---WREVIAIYVDDD--HGRNGIAA 183 (784)
Q Consensus 109 ~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~---w~~v~ii~~d~~--~g~~~~~~ 183 (784)
.......+...++|+|......+... ..+++..+.......+..+++.|...+ .++|++|..... ......+.
T Consensus 72 ~~~~~~~~~~~~iPvV~~~~~~~~~~--~~~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~~I~~i~~~~~~~~~~~R~~G 149 (306)
T 2vk2_A 72 WEPVLKEAKDAEIPVFLLDRSIDVKD--KSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKG 149 (306)
T ss_dssp CHHHHHHHHHTTCCEEEESSCCCCSC--GGGSSEEEECCHHHHHHHHHHHHHHHHTTSCEEEEEEECSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEecCCCCCCC--ccceEEEEecCHHHHHHHHHHHHHHhcCCCCCeEEEEEcCCCChhHHHHHHH
Confidence 12333445668999998754322110 001244556666677777888877766 789999986532 34556788
Q ss_pred HHHHHhccCc-EEEEeeccCCCCChhHHHHHHHHhhc-----CCceEEEEeccCCcHHHHHHHHHHcCCCCCC
Q 003958 184 LGDTLAAKRC-RISFKAPLSVEATEDEITDLLVKVAL-----TESRIIVVHTHYNRGPVVFHVAQYLGMLGTG 250 (784)
Q Consensus 184 l~~~l~~~gi-~v~~~~~~~~~~~~~d~~~~l~~l~~-----~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~ 250 (784)
+++.+++.|. .+.....-. .+..+-...++++.+ ..+++|+. .+...+..+++++++.|+..++
T Consensus 150 f~~al~~~g~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~ 219 (306)
T 2vk2_A 150 FAEAIKNAPNIKIIRSQSGD--FTRSKGKEVMESFIKAENNGKNICMVYA-HNDDMVIGAIQAIKEAGLKPGK 219 (306)
T ss_dssp HHHHTTTCTTEEEEEEEECT--TCHHHHHHHHHHHHHHTTTTTTCCEEEE-SSHHHHHHHHHHHHHTTCCBTT
T ss_pred HHHHHhhCCCeEEEEeccCC--CcHHHHHHHHHHHHHhCCCCCCeeEEEE-CCchHHHHHHHHHHHcCCCCCC
Confidence 9999998885 333211111 122333334444432 35677654 3445677899999999986553
No 106
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=97.89 E-value=0.00015 Score=73.91 Aligned_cols=204 Identities=15% Similarity=0.043 Sum_probs=114.8
Q ss_pred CceEEEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCchh
Q 003958 29 PSVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAV 107 (784)
Q Consensus 29 ~~~i~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s~ 107 (784)
....+||++.|.. ..+......+++.+.++ .|+++.+. +++..++....+....++.+++.+||......
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~-~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 76 (290)
T 3clk_A 6 KSSNVIAAVVSSVRTNFAQQILDGIQEEAHK--------NGYNLIIV-YSGSADPEEQKHALLTAIERPVMGILLLSIAL 76 (290)
T ss_dssp --CCEEEEECCCCSSSHHHHHHHHHHHHHHT--------TTCEEEEE-C----------CHHHHHHSSCCSEEEEESCC-
T ss_pred ccCCEEEEEeCCCCChHHHHHHHHHHHHHHH--------cCCeEEEE-eCCCCCHHHHHHHHHHHHhcCCCEEEEecccC
Confidence 3456899999853 33333444555555543 15555443 15555555555556667777888887543322
Q ss_pred hHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEc--CCCcchhHHHHH
Q 003958 108 TSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD--DDHGRNGIAALG 185 (784)
Q Consensus 108 ~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d--~~~g~~~~~~l~ 185 (784)
.. .....+...++|+|......+. + +..+..+....+..++++|...|.++|++|..+ ........+.++
T Consensus 77 ~~-~~~~~l~~~~iPvV~~~~~~~~------~-~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 148 (290)
T 3clk_A 77 TD-DNLQLLQSSDVPYCFLSMGFDD------D-RPFISSDDEDIGYQATNLLINEGHRQIGIAGIDQYPYTGRKRLAGYK 148 (290)
T ss_dssp ----CHHHHHCC--CEEEESCC--C------C-SCEEECCHHHHHHHHHHHHHTTTCCSEEEESCCCCTTTHHHHHHHHH
T ss_pred CH-HHHHHHHhCCCCEEEEcCCCCC------C-CCEEEeChHHHHHHHHHHHHHcCCCEEEEEeCCCCCcchHHHHHHHH
Confidence 22 2234456689999987543221 2 334556677778888898888899999999864 334566788999
Q ss_pred HHHhccCcEEEEeeccCCCCChhHHHHHHHHhhc-CCceEEEEeccCCcHHHHHHHHHHcCCCCCC
Q 003958 186 DTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL-TESRIIVVHTHYNRGPVVFHVAQYLGMLGTG 250 (784)
Q Consensus 186 ~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~-~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~ 250 (784)
+.+++.|+.+.....+....+..+-...++++.+ .++++|+. .....+..+++++++.|+..++
T Consensus 149 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~ 213 (290)
T 3clk_A 149 KALKEANIAINQEWIKPGDYSYTSGEQAMKAFGKNTDLTGIIA-ASDMTAIGILNQASSFGIEVPK 213 (290)
T ss_dssp HHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHCTTCCCSEEEE-SSHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHHcCCCCCcceEEcCCCChhhHHHHHHHHhccCCCcEEEE-CCcHHHHHHHHHHHHcCCCCCC
Confidence 9999988765321111211223333445555543 45677654 3445677889999999986554
No 107
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=97.89 E-value=0.0005 Score=69.22 Aligned_cols=205 Identities=8% Similarity=0.006 Sum_probs=124.5
Q ss_pred eEEEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCchhhH
Q 003958 31 VVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVTS 109 (784)
Q Consensus 31 ~i~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s~~~ 109 (784)
.-+||++.|.. ..+-.....+++.+.++ .|+++. +.++..++....+....++.+++.+||-.......
T Consensus 3 s~~Ig~i~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~ 72 (275)
T 3d8u_A 3 AYSIALIIPSLFEKACAHFLPSFQQALNK--------AGYQLL--LGYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHSQ 72 (275)
T ss_dssp -CEEEEEESCSSCHHHHHHHHHHHHHHHH--------TSCEEC--CEECTTCHHHHHHHHHHHHTSCCCCEEEESSCCCH
T ss_pred ceEEEEEeCCCccccHHHHHHHHHHHHHH--------CCCEEE--EEcCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCH
Confidence 34799999853 22223455666655554 145544 34555677666666777777788876642222112
Q ss_pred HHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCC--CcchhHHHHHHH
Q 003958 110 HVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIAALGDT 187 (784)
Q Consensus 110 ~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~~~ 187 (784)
.....+...++|+|......+ + +.+..+.......+..+++.|...|.++|++|..+.. ......+.+++.
T Consensus 73 -~~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~ 145 (275)
T 3d8u_A 73 -RTHQLLEASNTPVLEIAELSS---K---ASYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQSA 145 (275)
T ss_dssp -HHHHHHHHHTCCEEEESSSCS---S---SSSEEECBCHHHHHHHHHHHHHTTTCCCEEEEECSCSSHHHHHHHHHHHHH
T ss_pred -HHHHHHHhCCCCEEEEeeccC---C---CCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEcCCCCCchHHHHHHHHHHH
Confidence 233445567999998754322 1 2334566677777788889888889999999986533 345667889999
Q ss_pred HhccCcEEEEeeccCCCCChhHHHHHHHHhhcC--CceEEEEeccCCcHHHHHHHHHHcCCCCCCeEE
Q 003958 188 LAAKRCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVW 253 (784)
Q Consensus 188 l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~w 253 (784)
+++.|+.+.....+....+..+....++++.+. .+++|+. .....+..+++++++.|+..++-+-
T Consensus 146 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~ 212 (275)
T 3d8u_A 146 MIENYLTPDHFLTTHEAPSSQLGAEGLAKLLLRDSSLNALVC-SHEEIAIGALFECHRRVLKVPTDIA 212 (275)
T ss_dssp HHHTTCCCCCEEECSSCCCHHHHHHHHHHHHTTCTTCCEEEE-SSHHHHHHHHHHHHHTTCCTTTTCE
T ss_pred HHHcCCCCCccEEEeCCCChhHHHHHHHHHHhCCCCCCEEEE-cCcHHHHHHHHHHHHcCCCCCCceE
Confidence 999887543222222112333344455554333 4677654 3445677899999999987554333
No 108
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=97.86 E-value=0.00041 Score=70.57 Aligned_cols=205 Identities=12% Similarity=0.047 Sum_probs=126.8
Q ss_pred CceEEEEEEeec-----C-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEc
Q 003958 29 PSVVNIGALLSF-----S-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIG 102 (784)
Q Consensus 29 ~~~i~IG~i~~~-----~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiG 102 (784)
...-+||+++|. . ..+-.....+++-+.++. |+++ .+.++..++....+....+..+++.+||-
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~--~~~~~~~~~~~~~~~~~~~~~~~vdgiIi 75 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVE--------GYAL--YMSTGETEEEIFNGVVKMVQGRQIGGIIL 75 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHT--------TCEE--EECCCCSHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHc--------CCEE--EEEeCCCCHHHHHHHHHHHHcCCCCEEEE
Confidence 446789999997 2 223334555666555552 4544 44555555555455555666678888875
Q ss_pred cCchhhHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCC--Ccchh
Q 003958 103 PQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNG 180 (784)
Q Consensus 103 p~~s~~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~ 180 (784)
....... .....+...++|+|......+.. +.+..+......-+..+++.|.+.|.++|+++..... .....
T Consensus 76 ~~~~~~~-~~~~~l~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R 149 (292)
T 3k4h_A 76 LYSREND-RIIQYLHEQNFPFVLIGKPYDRK-----DEITYVDNDNYTAAREVAEYLISLGHKQIAFIGGGSDLLVTRDR 149 (292)
T ss_dssp SCCBTTC-HHHHHHHHTTCCEEEESCCSSCT-----TTSCEEECCHHHHHHHHHHHHHHTTCCCEEEEESCTTBHHHHHH
T ss_pred eCCCCCh-HHHHHHHHCCCCEEEECCCCCCC-----CCCCEEEECcHHHHHHHHHHHHHCCCceEEEEeCcccchhHHHH
Confidence 3322222 34455667899999875433211 1234456677777888889998899999999996543 34456
Q ss_pred HHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcC--CceEEEEeccCCcHHHHHHHHHHcCCCCCC
Q 003958 181 IAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGMLGTG 250 (784)
Q Consensus 181 ~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~ 250 (784)
.+.+++.+++.|+.+..........+..+....+.++.+. .+++|+. .+...+..++++++++|+..++
T Consensus 150 ~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~ 220 (292)
T 3k4h_A 150 LAGMSDALKLADIVLPKEYILHFDFSRESGQQAVEELMGLQQPPTAIMA-TDDLIGLGVLSALSKKGFVVPK 220 (292)
T ss_dssp HHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHHHHHHHcCCCCChheEEecCCCHHHHHHHHHHHHcCCCCCcEEEE-cChHHHHHHHHHHHHhCCCCCC
Confidence 7889999999887653222111112334444555555443 5666654 4455677899999999987554
No 109
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=97.85 E-value=0.00098 Score=67.76 Aligned_cols=201 Identities=10% Similarity=0.008 Sum_probs=127.6
Q ss_pred CceEEEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEc-cCch
Q 003958 29 PSVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIG-PQDA 106 (784)
Q Consensus 29 ~~~i~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiG-p~~s 106 (784)
....+||++.|.. ..+-.....+++-+.++. |+++. +.++..++....+....++.+++.+||- +...
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 75 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKHEFAQRLINAFKAEAKAN--------KYEAL--VATSQNSRISEREQILEFVHLKVDAIFITTLDD 75 (293)
T ss_dssp ---CEEEEEESCSCSHHHHHHHHHHHHHHHHT--------TCEEE--EEECSSCHHHHHHHHHHHHHTTCSEEEEECSCT
T ss_pred CCCcEEEEEEecCCcHHHHHHHHHHHHHHHHc--------CCEEE--EECCCCCHHHHHHHHHHHHHcCCCEEEEecCCh
Confidence 4467899999864 323334556666666552 45444 4566677877777778888888888765 3333
Q ss_pred hhHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHH-c-CCc-----EEEEEEEcC--CCc
Q 003958 107 VTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDH-Y-GWR-----EVIAIYVDD--DHG 177 (784)
Q Consensus 107 ~~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~-~-~w~-----~v~ii~~d~--~~g 177 (784)
.........+...++|+|..+...+. .+.+..+.......+..+++.|.. . |-+ +|++|.... ...
T Consensus 76 ~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~~ 150 (293)
T 3l6u_A 76 VYIGSAIEEAKKAGIPVFAIDRMIRS-----DAVVSSITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTT 150 (293)
T ss_dssp TTTHHHHHHHHHTTCCEEEESSCCCC-----TTCSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHH
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCCC-----CcceeEEecCHHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCchH
Confidence 33334455667789999987554321 123455667777778888888766 5 666 999998543 234
Q ss_pred chhHHHHHHHHhcc-CcEEEEeeccCCCCChhHHHHHHHHhhc--CCceEEEEeccCCcHHHHHHHHHHcCCC
Q 003958 178 RNGIAALGDTLAAK-RCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGML 247 (784)
Q Consensus 178 ~~~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~~~~a~~~g~~ 247 (784)
....+.+++.+++. |+.+.....-. .+..+....++++.+ .++++|+. .....+..+++++++.|+.
T Consensus 151 ~~R~~gf~~~l~~~~g~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~ 220 (293)
T 3l6u_A 151 NERHRGFLKGIENEPTLSIVDSVSGN--YDPVTSERVMRQVIDSGIPFDAVYC-HNDDIAMGVLEALKKAKIS 220 (293)
T ss_dssp HHHHHHHHHHHTTCTTEEEEEEEECT--TCHHHHHHHHHHHHHTTCCCSEEEE-SSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCCcEEeeeccCC--CCHHHHHHHHHHHHHhCCCCCEEEE-CCchHHHHHHHHHHhCCCC
Confidence 46678999999998 88876543222 233444455555443 34565543 4445677899999998874
No 110
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=97.84 E-value=0.0018 Score=65.50 Aligned_cols=196 Identities=11% Similarity=0.097 Sum_probs=119.5
Q ss_pred EEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEc-cCchhhHH
Q 003958 33 NIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIG-PQDAVTSH 110 (784)
Q Consensus 33 ~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiG-p~~s~~~~ 110 (784)
+||++.|.. ..+......+++.+.++. |+++ .+.++..++....+....++.+++.+||- |.......
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~--------g~~~--~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (283)
T 2ioy_A 3 TIGLVISTLNNPFFVTLKNGAEEKAKEL--------GYKI--IVEDSQNDSSKELSNVEDLIQQKVDVLLINPVDSDAVV 72 (283)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEE--EEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHhc--------CcEE--EEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhH
Confidence 689998764 333345566666666653 4544 44566677777666777788888988764 43333322
Q ss_pred HHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHc-C-CcEEEEEEEcCC--CcchhHHHHHH
Q 003958 111 VVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHY-G-WREVIAIYVDDD--HGRNGIAALGD 186 (784)
Q Consensus 111 ~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~-~-w~~v~ii~~d~~--~g~~~~~~l~~ 186 (784)
.....+...++|+|......+ +. +.+..+......-+..++++|... | -++|++|..... ......+.+++
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~---~~--~~~~~V~~D~~~~g~~a~~~L~~~~gg~~~I~~i~g~~~~~~~~~R~~Gf~~ 147 (283)
T 2ioy_A 73 TAIKEANSKNIPVITIDRSAN---GG--DVVCHIASDNVKGGEMAAEFIAKALKGKGNVVELEGIPGASAARDRGKGFDE 147 (283)
T ss_dssp HHHHHHHHTTCCEEEESSCCS---SS--CCSEEEEECHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEecCCCC---Cc--ceeEEEecChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHH
Confidence 333446678999998754221 11 122334455566677788887665 5 899999986432 23456788999
Q ss_pred HHhcc-CcEEEEeeccCCCCChhHHHHHHHHhhc--CCceEEEEeccCCcHHHHHHHHHHcCC
Q 003958 187 TLAAK-RCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGM 246 (784)
Q Consensus 187 ~l~~~-gi~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~~~~a~~~g~ 246 (784)
.+++. |+.+.....-. .+..+-...++++.+ ..+++|+ +.+...+..+++++++.|+
T Consensus 148 al~~~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~ 207 (283)
T 2ioy_A 148 AIAKYPDIKIVAKQAAD--FDRSKGLSVMENILQAQPKIDAVF-AQNDEMALGAIKAIEAANR 207 (283)
T ss_dssp HHTTCTTEEEEEEEECT--TCHHHHHHHHHHHHHHCSCCCEEE-ESSHHHHHHHHHHHHHTTC
T ss_pred HHHhCCCCEEEeeccCC--CCHHHHHHHHHHHHHhCCCccEEE-ECCchHHHHHHHHHHHCCC
Confidence 99888 87764322111 233333344444433 2456544 3444567888999999887
No 111
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=97.84 E-value=0.00064 Score=68.25 Aligned_cols=205 Identities=9% Similarity=-0.002 Sum_probs=129.6
Q ss_pred EEEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCchhhHH
Q 003958 32 VNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVTSH 110 (784)
Q Consensus 32 i~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s~~~~ 110 (784)
-+||+++|.. ..+-.....+++-+.++. |+++.+ .++..++....+....++.+++.+||-........
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~ 72 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARAR--------GYQLLI--ASSDDQPDSERQLQQLFRARRCDALFVASCLPPED 72 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHT--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSSC
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHC--------CCEEEE--EeCCCCHHHHHHHHHHHHHcCCCEEEEecCccccH
Confidence 4699999874 223334556666666552 555544 45566777777777778888888887533331123
Q ss_pred HHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCC--CcchhHHHHHHHH
Q 003958 111 VVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIAALGDTL 188 (784)
Q Consensus 111 ~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~~~l 188 (784)
.....+...++|+|..+...+ + +.+..........+..+++.|.+.|.++|+++..... ......+.+++.+
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l 146 (272)
T 3o74_A 73 DSYRELQDKGLPVIAIDRRLD---P---AHFCSVISDDRDASRQLAASLLSSAPRSIALIGARPELSVSQARAGGFDEAL 146 (272)
T ss_dssp CHHHHHHHTTCCEEEESSCCC---T---TTCEEEEECHHHHHHHHHHHHHTTCCSEEEEEEECTTSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEEccCCC---c---cccCEEEEchHHHHHHHHHHHHHCCCcEEEEEecCCCCccHHHHHHHHHHHH
Confidence 334556678999998754322 1 1233455667777888889998889999999987543 3456688999999
Q ss_pred hccCcEEEEeeccCCCCChhHHHHHHHHhhc--C-CceEEEEeccCCcHHHHHHHHHHcCCCCCC-eEEEec
Q 003958 189 AAKRCRISFKAPLSVEATEDEITDLLVKVAL--T-ESRIIVVHTHYNRGPVVFHVAQYLGMLGTG-YVWIAT 256 (784)
Q Consensus 189 ~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~--~-~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~-~~wi~~ 256 (784)
++.|+.+.....-. .+..+....++++.+ . .+++|+. .....+..+++++++.|+ .++ ...++.
T Consensus 147 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~ai~~-~~d~~a~g~~~al~~~g~-vp~di~vvg~ 214 (272)
T 3o74_A 147 QGYTGEVRRYQGEA--FSRECGQRLMQQLIDDLGGLPDALVT-TSYVLLQGVFDTLQARPV-DSRQLQLGTF 214 (272)
T ss_dssp TTCCSEEEEEEESS--SSHHHHHHHHHHHHHHHTSCCSEEEE-SSHHHHHHHHHHHHTSCG-GGCCCEEEEE
T ss_pred HHcCCChheeecCC--CCHHHHHHHHHHHHhcCCCCCcEEEE-eCchHHHHHHHHHHHcCC-CccceEEEEe
Confidence 99998765433222 233333344444432 2 4677654 445567789999999997 444 334443
No 112
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=97.83 E-value=0.00096 Score=69.61 Aligned_cols=206 Identities=9% Similarity=-0.015 Sum_probs=125.3
Q ss_pred ceEEEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCchhh
Q 003958 30 SVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVT 108 (784)
Q Consensus 30 ~~i~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s~~ 108 (784)
...+||++.|.. ..+......+++.+.++ .|+++.+ .++..++....+....++.+++.+||-......
T Consensus 57 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 126 (340)
T 1qpz_A 57 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQ--------KGYTLIL--GNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYP 126 (340)
T ss_dssp CCSEEEEEESCSCSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCSCCC
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 356899999864 33333455666666555 2565544 566667776666667777788998875322211
Q ss_pred HHHHHHhhh-cCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCC--CcchhHHHHH
Q 003958 109 SHVVSHVAN-ELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIAALG 185 (784)
Q Consensus 109 ~~~va~~~~-~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~ 185 (784)
. .....+. ..++|+|......+. . +........+..-+..++++|...|.++|++|..... ......+.++
T Consensus 127 ~-~~~~~l~~~~~iPvV~~~~~~~~---~--~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~ 200 (340)
T 1qpz_A 127 E-PLLAMLEEYRHIPMVVMDWGEAK---A--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFM 200 (340)
T ss_dssp H-HHHHHHHTTTTSCEEEEEESSCC---C--SSSEEEECCHHHHHHHHHHHHHHHTCCCEEEECCCTTSHHHHHHHHHHH
T ss_pred h-HHHHHHHhhCCCCEEEEecccCC---C--CCCCEEEECHHHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHHHHH
Confidence 1 1223333 368999987653221 1 1123455666666778888888889999999986432 3456678899
Q ss_pred HHHhccCcEEEEeeccCCCCChhHHHHHHHHhhc--CCceEEEEeccCCcHHHHHHHHHHcCCCCCCeE
Q 003958 186 DTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYV 252 (784)
Q Consensus 186 ~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~ 252 (784)
+.+++.|+.+.....+....+..+-...++++.+ ..+++|+. .+...+..+++++++.|+..++-+
T Consensus 201 ~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~di 268 (340)
T 1qpz_A 201 KAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFC-GGDIMAMGALCAADEMGLRVPQDV 268 (340)
T ss_dssp HHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHHCCCCCChhheEeCCCCHHHHHHHHHHHHcCCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCCe
Confidence 9999988765322122211223333344555443 35677665 444567789999999998765433
No 113
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=97.81 E-value=0.0002 Score=74.61 Aligned_cols=205 Identities=12% Similarity=0.030 Sum_probs=124.2
Q ss_pred CCceEEEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCch
Q 003958 28 RPSVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDA 106 (784)
Q Consensus 28 ~~~~i~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s 106 (784)
.....+||++.|.. ..+......+++.+.++. |+++.+ .++..++....+....++.+++.+||.....
T Consensus 57 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 126 (332)
T 2hsg_A 57 SKKTTTVGVIIPDISNIFYAELARGIEDIATMY--------KYNIIL--SNSDQNQDKELHLLNNMLGKQVDGIIFMSGN 126 (332)
T ss_dssp TC-CCEEEEEEC--CCSHHHHHHHHHHHHHHHH--------TCEEEE--EECCSHHHHHHHHHHHTSCCSSCCEEECCSS
T ss_pred hCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc--------CCEEEE--EeCCCChHHHHHHHHHHHhCCCcEEEEecCC
Confidence 34567899999853 333345666777666652 555544 4555566555555666667788887754332
Q ss_pred hhHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcC-C--CcchhHHH
Q 003958 107 VTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDD-D--HGRNGIAA 183 (784)
Q Consensus 107 ~~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~-~--~g~~~~~~ 183 (784)
.... ....+...++|+|......+ + +.+.........-+..++++|...|.++|++|.... . ......+.
T Consensus 127 ~~~~-~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~G 199 (332)
T 2hsg_A 127 VTEE-HVEELKKSPVPVVLAASIES---T---NQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKG 199 (332)
T ss_dssp CCHH-HHHHHTTSSSCEEEESCCCS---C---TTSCEEEECHHHHHHHHHHHHHTTTCSCEEEEESCTTSHHHHTTHHHH
T ss_pred CCHH-HHHHHHhCCCCEEEEccccC---C---CCCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCcccCccHHHHHHH
Confidence 2222 23345568999998754322 1 122334556666677788888888999999998653 2 34566889
Q ss_pred HHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcC--CceEEEEeccCCcHHHHHHHHHHcCCCCCC
Q 003958 184 LGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGMLGTG 250 (784)
Q Consensus 184 l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~ 250 (784)
+++.+++.|+.+.....+....+..+-...++++.+. .+++|+. .+...+..+++++++.|+..|+
T Consensus 200 f~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~ 267 (332)
T 2hsg_A 200 YKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFV-GTDEMALGVIHGAQDRGLNVPN 267 (332)
T ss_dssp HHHHHHTTTCCCCGGGEEECCSSHHHHHHHHHHHHHSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHcCCCCCeEEEE-CChHHHHHHHHHHHHcCCCCCC
Confidence 9999999987643211111112223333445554333 5677664 4455677899999999986544
No 114
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=97.81 E-value=0.00032 Score=71.26 Aligned_cols=203 Identities=9% Similarity=-0.004 Sum_probs=122.4
Q ss_pred eEEEEEEeec-----CCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCc
Q 003958 31 VVNIGALLSF-----STNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQD 105 (784)
Q Consensus 31 ~i~IG~i~~~-----~~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~ 105 (784)
.-+||++.|. +..+-.....+++.+.++ .|+++.+ .++..++....+....++.+++.+||....
T Consensus 4 s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 73 (287)
T 3bbl_A 4 SFMIGYSWTQTEPGQVNHILDQFLSSMVREAGA--------VNYFVLP--FPFSEDRSQIDIYRDLIRSGNVDGFVLSSI 73 (287)
T ss_dssp CCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHH--------TTCEEEE--CCCCSSTTCCHHHHHHHHTTCCSEEEECSC
T ss_pred eeEEEEEecccccccCChhHHHHHHHHHHHHHH--------cCCEEEE--EeCCCchHHHHHHHHHHHcCCCCEEEEeec
Confidence 4579999886 333334556666666665 2555544 444444444344556677778998875332
Q ss_pred hhhHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCC--CcchhHHH
Q 003958 106 AVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIAA 183 (784)
Q Consensus 106 s~~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~ 183 (784)
.... .....+...++|+|......+ + +.+..........+..+++.|...|.++|++|..... ......+.
T Consensus 74 ~~~~-~~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 146 (287)
T 3bbl_A 74 NYND-PRVQFLLKQKFPFVAFGRSNP---D---WDFAWVDIDGTAGTRQAVEYLIGRGHRRIAILAWPEDSRVGNDRLQG 146 (287)
T ss_dssp CTTC-HHHHHHHHTTCCEEEESCCST---T---CCCCEEEECHHHHHHHHHHHHHHHTCCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCc-HHHHHHHhcCCCEEEECCcCC---C---CCCCEEEeccHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHH
Confidence 2211 223445568999998754322 1 1223345566677788888888789999999986532 34566788
Q ss_pred HHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhc-C---CceEEEEeccCCcHHHHHHHHHHcCCCCCCe
Q 003958 184 LGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL-T---ESRIIVVHTHYNRGPVVFHVAQYLGMLGTGY 251 (784)
Q Consensus 184 l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~-~---~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~ 251 (784)
+++.+++.|+.+.....+....+..+-...++++.+ . ++++|+. .+...+..+++++++.|+..|+-
T Consensus 147 f~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~vP~d 217 (287)
T 3bbl_A 147 YLEAMQTAQLPIETGYILRGEGTFEVGRAMTLHLLDLSPERRPTAIMT-LNDTMAIGAMAAARERGLTIGTD 217 (287)
T ss_dssp HHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSCTTTSCSEEEE-SSHHHHHHHHHHHHHTTCCBTTT
T ss_pred HHHHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHHhhCCCCCCcEEEE-CCcHHHHHHHHHHHHcCCCCCCC
Confidence 999999988764321111111233333445555543 2 5677664 34456778999999999875543
No 115
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=97.80 E-value=0.00092 Score=69.77 Aligned_cols=208 Identities=7% Similarity=-0.034 Sum_probs=124.8
Q ss_pred CCceEEEEEEeec--CCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCC--CCHHHHHHHHHHHHhcCceEEEcc
Q 003958 28 RPSVVNIGALLSF--STNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCN--HSGFLALAEALHLMEGQTVAIIGP 103 (784)
Q Consensus 28 ~~~~i~IG~i~~~--~~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~--~~~~~a~~~~~~li~~~v~aiiGp 103 (784)
.....+||++.|. +..+-.....+++.+.++ .|+++.+...++. .++....+....++.+++.+||-+
T Consensus 40 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~ 111 (342)
T 1jx6_A 40 TQRPIKISVVYPGQQVSDYWVRNIASFEKRLYK--------LNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFT 111 (342)
T ss_dssp CSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHH--------TTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEEC
T ss_pred cCCceEEEEEecCCcccHHHHHHHHHHHHHHHH--------cCCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEe
Confidence 4567899999986 333333455666666554 2566666655555 577766667777888889988775
Q ss_pred CchhhHHHHHHhhhcCCccEEecccCCCCCCc-CCCCceEeecCChHHHHHHHHHHHHHc-C-CcEEEEEEEcCC-Ccch
Q 003958 104 QDAVTSHVVSHVANELQVPLLSFSATDPTLSS-LQFPYFVRTTQSDQYQMAAIAEIVDHY-G-WREVIAIYVDDD-HGRN 179 (784)
Q Consensus 104 ~~s~~~~~va~~~~~~~ip~Is~~a~~~~l~~-~~~p~~~r~~ps~~~~~~ai~~~l~~~-~-w~~v~ii~~d~~-~g~~ 179 (784)
............+...++|+|..........+ ...+.+..+......-+..++++|... | .++|++|..... ....
T Consensus 112 ~~~~~~~~~~~~~~~~~ip~V~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~Gg~~~I~~i~~~~~~~~~~ 191 (342)
T 1jx6_A 112 LDTTRHRKFVEHVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYISDV 191 (342)
T ss_dssp CSSSTTHHHHHHHHHHCSCEEEEETCCSCBGGGTTSCCSEEEECCHHHHHHHHHHHHHHHSCTTCEEEEECCSTTHHHHH
T ss_pred CChHhHHHHHHHHHHcCCCEEEEecCCCcccccccCCCceEEecCcHHHHHHHHHHHHHHcCCCceEEEEEcCCcchhhH
Confidence 44332223334455568999876322211110 112234445666777778888887764 7 999999985533 2345
Q ss_pred hHHHHHHHHhccCc-EEEEeeccCCCCChhHHHHHHHHhhc--CCceEEEEeccCCcHHHHHHHHHHcCC
Q 003958 180 GIAALGDTLAAKRC-RISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGM 246 (784)
Q Consensus 180 ~~~~l~~~l~~~gi-~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~~~~a~~~g~ 246 (784)
..+.+++.+++.|+ .... .+....+..+-...++++.+ ..+++|+. .+...+..+++++++.|+
T Consensus 192 R~~Gf~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~nd~~A~g~~~al~~~g~ 258 (342)
T 1jx6_A 192 RGDTFIHQVNRDNNFELQS--AYYTKATKQSGYDAAKASLAKHPDVDFIYA-CSTDVALGAVDALAELGR 258 (342)
T ss_dssp HHHHHHHHHHHHHCCEEEE--EECCCSSHHHHHHHHHHHHHHCCCCSEEEE-SSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcEEEE--EecCCCCHHHHHHHHHHHHHhCCCccEEEE-CCChhHHHHHHHHHHcCC
Confidence 67788888888876 3222 12211233333344444432 34676654 444567788999999887
No 116
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=97.79 E-value=0.00095 Score=68.36 Aligned_cols=213 Identities=10% Similarity=0.005 Sum_probs=127.3
Q ss_pred eEEEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEc-cCchhh
Q 003958 31 VVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIG-PQDAVT 108 (784)
Q Consensus 31 ~i~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiG-p~~s~~ 108 (784)
+++||++.|.. ..+-.....+++-+.++. |+++ .+.++ .++....+....++.+++.+||- |..+..
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~--~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~~ 70 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKDL--------GFEV--IKIAV-PDGEKTLNAIDSLAASGAKGFVICTPDPKL 70 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TEEE--EEEEC-CSHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHHc--------CCEE--EEeCC-CCHHHHHHHHHHHHHcCCCEEEEeCCCchh
Confidence 68999999864 333345567777777664 4444 45566 47777777888888889988765 444444
Q ss_pred HHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHH-HcCC-----cEEEEEE-EcC--CCcch
Q 003958 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVD-HYGW-----REVIAIY-VDD--DHGRN 179 (784)
Q Consensus 109 ~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~-~~~w-----~~v~ii~-~d~--~~g~~ 179 (784)
.......+...++|+|......+.......+.+..+.......+..++++|. +.+- .+++++. ... .....
T Consensus 71 ~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~g~~~~~~~~i~~~~~~~~~~~~~~~ 150 (306)
T 8abp_A 71 GSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMLAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARR 150 (306)
T ss_dssp HHHHHHHHHHTTCEEEEESSCCBCTTSCBCTTSCEEEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEECTTSHHHHH
T ss_pred hHHHHHHHHHCCCcEEEeCCCCCCccccccccccEEecChhHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCChHHHH
Confidence 4555566777899999876432221111111233445556666666666654 3343 3898886 333 23345
Q ss_pred hHHHHHHHHhccCc---EEEEeeccCCCCChhHHHHHHHHhhcC--CceE-EEEeccCCcHHHHHHHHHHcCCCCCCeEE
Q 003958 180 GIAALGDTLAAKRC---RISFKAPLSVEATEDEITDLLVKVALT--ESRI-IVVHTHYNRGPVVFHVAQYLGMLGTGYVW 253 (784)
Q Consensus 180 ~~~~l~~~l~~~gi---~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~v-Ivl~~~~~~~~~~~~~a~~~g~~~~~~~w 253 (784)
..+.+++.+++.|. ++.....- ..+...-...++++.+. +.+. +|++.....+..+++++++.|+...+...
T Consensus 151 R~~Gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~a~~i~~~nD~~A~g~~~al~~~g~~v~di~v 228 (306)
T 8abp_A 151 RTTGSMDALKAAGFPEKQIYQVPTK--SNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIG 228 (306)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEECS--SSSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred HHHHHHHHHHhcCCCCcEEEeeccC--CCChHHHHHHHHHHHHhCCCCceEEEEeCCcHHHHHHHHHHHHcCCCCCceEE
Confidence 67889999988764 23322211 12334444555555443 4555 34455556788899999999986423333
Q ss_pred Eec
Q 003958 254 IAT 256 (784)
Q Consensus 254 i~~ 256 (784)
++.
T Consensus 229 vG~ 231 (306)
T 8abp_A 229 IGI 231 (306)
T ss_dssp EEE
T ss_pred EEe
Confidence 443
No 117
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=97.76 E-value=0.0003 Score=71.60 Aligned_cols=206 Identities=10% Similarity=0.024 Sum_probs=127.5
Q ss_pred CceEEEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCchh
Q 003958 29 PSVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAV 107 (784)
Q Consensus 29 ~~~i~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s~ 107 (784)
....+||+++|.. ..+-.....+++-+.++ .|+++. +.++..++....+....++.+++.+||-.....
T Consensus 6 ~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 75 (291)
T 3egc_A 6 KRSNVVGLIVSDIENVFFAEVASGVESEARH--------KGYSVL--LANTAEDIVREREAVGQFFERRVDGLILAPSEG 75 (291)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS
T ss_pred CCCcEEEEEECCCcchHHHHHHHHHHHHHHH--------CCCEEE--EEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 3467899999864 22333455666666655 145544 456666777766677777788899887543332
Q ss_pred hHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCC--CcchhHHHHH
Q 003958 108 TSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIAALG 185 (784)
Q Consensus 108 ~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~ 185 (784)
.......+...++|+|..+...+ + +.+..+..+....+..+++.|...|.++|+++..... ......+.++
T Consensus 76 -~~~~~~~~~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 148 (291)
T 3egc_A 76 -EHDYLRTELPKTFPIVAVNRELR---I---PGCGAVLSENVRGARTAVEYLIARGHTRIGAIVGSAGLMTSRERLKGFR 148 (291)
T ss_dssp -CCHHHHHSSCTTSCEEEESSCCC---C---TTCEEEEECHHHHHHHHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHH
T ss_pred -ChHHHHHhhccCCCEEEEecccC---C---CCCCEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCCCCcCHHHHHHHHH
Confidence 23444566778999998755432 1 2234556677778888889998889999999986542 3456678899
Q ss_pred HHHhccCcEEEEeeccCCCCChhHHHHHHHHhh--cCCceEEEEeccCCcHHHHHHHHHHcCCCCCCeE
Q 003958 186 DTLAAKRCRISFKAPLSVEATEDEITDLLVKVA--LTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYV 252 (784)
Q Consensus 186 ~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~--~~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~ 252 (784)
+.+++.|+.+..........+..+....+.++. ...+++|+. .+...+..+++++++.|+..++-+
T Consensus 149 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di 216 (291)
T 3egc_A 149 AAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLTGADRPTALLT-SSHRITEGAMQALNVLGLRYGPDV 216 (291)
T ss_dssp HHHHHTTCCCCGGGEEC------CCHHHHHHHHTC-CCCSEEEE-SSHHHHHHHHHHHHHHTCCBTTTB
T ss_pred HHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHHhCCCCCcEEEE-CCcHHHHHHHHHHHHcCCCCCCce
Confidence 999988876432111111111111123333333 245676654 455567789999999998755433
No 118
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=97.74 E-value=0.00028 Score=73.35 Aligned_cols=202 Identities=12% Similarity=0.051 Sum_probs=123.6
Q ss_pred CceEEEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCchh
Q 003958 29 PSVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAV 107 (784)
Q Consensus 29 ~~~i~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s~ 107 (784)
....+||++.|.. ..+......+++.+.++ .|+++.+ .++..++....+....++.+++.+|| .....
T Consensus 58 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI-~~~~~ 126 (330)
T 3ctp_A 58 KNSKTIGLMVPNISNPFFNQMASVIEEYAKN--------KGYTLFL--CNTDDDKEKEKTYLEVLQSHRVAGII-ASRSQ 126 (330)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEE-EETCC
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHH--------CCCEEEE--EeCCCChHHHHHHHHHHHhCCCCEEE-ECCCC
Confidence 3467899999864 33333455666666654 2565544 45666777666667777788999988 44322
Q ss_pred hHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCC--CcchhHHHHH
Q 003958 108 TSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIAALG 185 (784)
Q Consensus 108 ~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~ 185 (784)
.. +.+...++|+|......+. .+ ..+......-+..++++|...|.++|++|..... ......+.++
T Consensus 127 ~~----~~l~~~~iPvV~~~~~~~~----~~---~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 195 (330)
T 3ctp_A 127 CE----DEYANIDIPVVAFENHILD----NI---ITISSDNYNGGRMAFDHLYEKGCRKILHIKGPEVFEATELRYKGFL 195 (330)
T ss_dssp CS----GGGTTCCSCEEEESSCCCT----TS---CEEEECHHHHHHHHHHHHHHTTCCSEEEEECCTTCHHHHHHHHHHH
T ss_pred CH----HHHHhcCCCEEEEeccCCC----CC---CEEEeCHHHHHHHHHHHHHHCCCCeEEEEeCCccCccHHHHHHHHH
Confidence 21 2345679999987543221 22 2344556666777888888889999999986543 3456678899
Q ss_pred HHHhccCcEEEEeeccCCCCChhHHHHHHHHhhc-CCceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEE
Q 003958 186 DTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL-TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWI 254 (784)
Q Consensus 186 ~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~-~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi 254 (784)
+.+++.|+.+. ...+....+..+-...++++.+ .++++|+.. ....+..+++++++.|+..|+-+-+
T Consensus 196 ~al~~~g~~~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~~~-~d~~A~g~~~al~~~G~~vP~disv 263 (330)
T 3ctp_A 196 DGARAKDLEID-FIEFQHDFQVKMLEEDINSMKDIVNYDGIFVF-NDIAAATVMRALKKRGVSIPQEVQI 263 (330)
T ss_dssp HHHHHTTCCCE-EEECSSSCCGGGGGCCCTTGGGGGGSSEEEES-SHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHcCCCcc-eeEEcCCCCHHHHHHHHHHHhcCCCCcEEEEC-CHHHHHHHHHHHHHcCCCCCCCeEE
Confidence 99999997654 2222211111111122233322 356776653 3455778999999999876543333
No 119
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=97.73 E-value=0.0012 Score=66.93 Aligned_cols=205 Identities=10% Similarity=0.024 Sum_probs=121.5
Q ss_pred CceEEEEEEeecCC---cchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCc
Q 003958 29 PSVVNIGALLSFST---NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQD 105 (784)
Q Consensus 29 ~~~i~IG~i~~~~~---~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~ 105 (784)
...-+||+++|... .+-.....+++-+.++ .|+++.+. ++..+..........+..+++.+||-...
T Consensus 6 ~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 75 (288)
T 3gv0_A 6 GKTNVIALVLSVDEELMGFTSQMVFGITEVLST--------TQYHLVVT--PHIHAKDSMVPIRYILETGSADGVIISKI 75 (288)
T ss_dssp -CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTT--------SSCEEEEC--CBSSGGGTTHHHHHHHHHTCCSEEEEESC
T ss_pred CCCCEEEEEecCCccccHHHHHHHHHHHHHHHH--------cCCEEEEe--cCCcchhHHHHHHHHHHcCCccEEEEecC
Confidence 34678999999643 2222333444433332 25655544 33333322222222344567877764322
Q ss_pred hhhHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCC--CcchhHHH
Q 003958 106 AVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIAA 183 (784)
Q Consensus 106 s~~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~ 183 (784)
.... .....+...++|+|..+...+ + +.+-.+......-+..+++.|...|.++|++|..+.. ......+.
T Consensus 76 ~~~~-~~~~~l~~~~iPvV~i~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~g 148 (288)
T 3gv0_A 76 EPND-PRVRFMTERNMPFVTHGRSDM---G---IEHAFHDFDNEAYAYEAVERLAQCGRKRIAVIVPPSRFSFHDHARKG 148 (288)
T ss_dssp CTTC-HHHHHHHHTTCCEEEESCCCS---S---CCCEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSHHHHHHHHH
T ss_pred CCCc-HHHHHHhhCCCCEEEECCcCC---C---CCCcEEEeCcHHHHHHHHHHHHHCCCCeEEEEcCCcccchHHHHHHH
Confidence 2211 334456678999998754322 1 1223455667777888889998899999999986543 34566789
Q ss_pred HHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcC--CceEEEEeccCCcHHHHHHHHHHcCCCCCCe
Q 003958 184 LGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGMLGTGY 251 (784)
Q Consensus 184 l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~ 251 (784)
+++.+++.|+.+.....+....+..+....++++.+. .+++|+. .+...+..+++++++.|+..++-
T Consensus 149 f~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~vP~d 217 (288)
T 3gv0_A 149 FNRGIRDFGLTEFPIDAVTIETPLEKIRDFGQRLMQSSDRPDGIVS-ISGSSTIALVAGFEAAGVKIGED 217 (288)
T ss_dssp HHHHHHHTTCEECCCCSCCTTSCHHHHHHHHHHHTTSSSCCSEEEE-SCHHHHHHHHHHHHTTTCCTTTS
T ss_pred HHHHHHHcCCCcchhheeccccchHHHHHHHHHHHhCCCCCcEEEE-cCcHHHHHHHHHHHHcCCCCCCc
Confidence 9999999998765433333223444455566665543 4666553 44556778999999999875543
No 120
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=97.71 E-value=0.002 Score=64.86 Aligned_cols=205 Identities=9% Similarity=-0.002 Sum_probs=126.2
Q ss_pred CceEEEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCchh
Q 003958 29 PSVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAV 107 (784)
Q Consensus 29 ~~~i~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s~ 107 (784)
....+||+++|.. ..+-.....+++-+.++ . |+++. +.++..+...-.+....++.+++.+||-.....
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~---~-----g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 74 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILES---R-----GYIGV--LFDANADIEREKTLLRAIGSRGFDGLILQSFSN 74 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHT---T-----TCEEE--EEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHH---C-----CCEEE--EEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc
Confidence 4467899999864 22223344455544443 1 45544 455666776666667777778888887544333
Q ss_pred hHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCC-C--cchhHHHH
Q 003958 108 TSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD-H--GRNGIAAL 184 (784)
Q Consensus 108 ~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~-~--g~~~~~~l 184 (784)
......+...++|+|..+...+ +.. +-.+..+...-+..+++.|.+.|.++|+++..... . .....+.+
T Consensus 75 --~~~~~~l~~~~iPvV~i~~~~~---~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf 146 (276)
T 3jy6_A 75 --PQTVQEILHQQMPVVSVDREMD---ACP---WPQVVTDNFEAAKAATTAFRQQGYQHVVVLTSELELSRTRQERYRGI 146 (276)
T ss_dssp --HHHHHHHHTTSSCEEEESCCCT---TCS---SCEEECCHHHHHHHHHHHHHTTTCCEEEEEEECSTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHCCCCEEEEecccC---CCC---CCEEEEChHHHHHHHHHHHHHcCCCeEEEEecCCCCCchHHHHHHHH
Confidence 4445566778999998754322 111 23445667777888889998899999999997653 2 24567788
Q ss_pred HHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhc-CCceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEEe
Q 003958 185 GDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL-TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIA 255 (784)
Q Consensus 185 ~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~-~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi~ 255 (784)
++.+++.+. +..... . ...........+.++. .++++|+. .+...+..+++++++.|+..++-+-|.
T Consensus 147 ~~~l~~~~~-~~~~~~-~-~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vi 214 (276)
T 3jy6_A 147 LAAAQDVDV-LEVSES-S-YNHSEVHQRLTQLITQNDQKTVAFA-LKERWLLEFFPNLIISGLIDNQTVTAT 214 (276)
T ss_dssp HTTCSEEEE-EEECSS-S-CCHHHHHHHHHHHHHSSSSCEEEEE-SSHHHHHHHSHHHHHSSSCCSSSEEEE
T ss_pred HHHHHhCCc-EEEecc-c-cCCcHHHHHHHHHHhcCCCCcEEEE-eCcHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 888877753 221110 0 0122234444444543 45666554 455667789999999998766544433
No 121
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=97.67 E-value=0.00018 Score=72.86 Aligned_cols=198 Identities=11% Similarity=-0.001 Sum_probs=120.6
Q ss_pred ceEEEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCchhh
Q 003958 30 SVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVT 108 (784)
Q Consensus 30 ~~i~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s~~ 108 (784)
..-+||+++|.. ..+-.....+++-+.++. |+++.+...+ ++....+....++.+++.+|| ......
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~---~~~~~~~~~~~l~~~~vdgiI-~~~~~~ 71 (280)
T 3gyb_A 4 RTQLIAVLIDDYSNPWFIDLIQSLSDVLTPK--------GYRLSVIDSL---TSQAGTDPITSALSMRPDGII-IAQDIP 71 (280)
T ss_dssp CCCEEEEEESCTTSGGGHHHHHHHHHHHGGG--------TCEEEEECSS---SSCSSSCHHHHHHTTCCSEEE-EESCC-
T ss_pred ccCEEEEEeCCCCChHHHHHHHHHHHHHHHC--------CCEEEEEeCC---CchHHHHHHHHHHhCCCCEEE-ecCCCC
Confidence 456899999864 333345556666555542 5555554433 333333445566777899988 333332
Q ss_pred HHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCCCcchhHHHHHHHH
Q 003958 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTL 188 (784)
Q Consensus 109 ~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l 188 (784)
...+.. .++|+|......+ .+. .+..+.......+..++++|...|.++|+++...........+.+++.+
T Consensus 72 ~~~~~~----~~iPvV~~~~~~~--~~~---~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~R~~gf~~~l 142 (280)
T 3gyb_A 72 DFTVPD----SLPPFVIAGTRIT--QAS---THDSVANDDFRGAEIATKHLIDLGHTHIAHLRVGSGAGLRRFESFEATM 142 (280)
T ss_dssp -----------CCCEEEESCCCS--SSC---STTEEEECHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred hhhHhh----cCCCEEEECCCCC--CCC---CCCEEEechHHHHHHHHHHHHHCCCCeEEEEeCCCchHHHHHHHHHHHH
Confidence 222222 8999998765431 111 2233456667778888899988899999999976544666788999999
Q ss_pred hccCcEEEEeeccCCCCChhHHHHHHHHhhc--CCceEEEEeccCCcHHHHHHHHHHcCCCCCC
Q 003958 189 AAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGTG 250 (784)
Q Consensus 189 ~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~ 250 (784)
++.|+.+.... .....+..+....++++.+ ..+++|+. .....+..+++++++.|+..++
T Consensus 143 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~ 204 (280)
T 3gyb_A 143 RAHGLEPLSND-YLGPAVEHAGYTETLALLKEHPEVTAIFS-SNDITAIGALGAARELGLRVPE 204 (280)
T ss_dssp HHTTCCCEECC-CCSCCCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHHTCCTTT
T ss_pred HHcCcCCCccc-ccCCCCHHHHHHHHHHHHhCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCC
Confidence 99987765333 2222233334444454433 34666654 4455677899999999987554
No 122
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=97.62 E-value=0.0011 Score=69.23 Aligned_cols=210 Identities=9% Similarity=0.005 Sum_probs=128.5
Q ss_pred CCceEEEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCch
Q 003958 28 RPSVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDA 106 (784)
Q Consensus 28 ~~~~i~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s 106 (784)
....-.||++.|.. ..+-.....+++-+.++ .|+++ .+.++..++..-.+....++.+++.+||-....
T Consensus 65 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~--------~g~~~--~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~ 134 (344)
T 3kjx_A 65 SNRVNLVAVIIPSLSNMVFPEVLTGINQVLED--------TELQP--VVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLE 134 (344)
T ss_dssp TSCCSEEEEEESCSSSSSHHHHHHHHHHHHTS--------SSSEE--EEEECTTCHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred cCCCCEEEEEeCCCCcHHHHHHHHHHHHHHHH--------CCCEE--EEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 34467899999864 22223344444444433 25655 445666677776667777888888887643322
Q ss_pred hhHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcC---CCcchhHHH
Q 003958 107 VTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDD---DHGRNGIAA 183 (784)
Q Consensus 107 ~~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~---~~g~~~~~~ 183 (784)
... .....+...++|+|..+.... .+...........-+..+++.|...|.++|++|.... .......+.
T Consensus 135 ~~~-~~~~~l~~~~iPvV~i~~~~~------~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~G 207 (344)
T 3kjx_A 135 HSE-AARAMLDAAGIPVVEIMDSDG------KPVDAMVGISHRRAGREMAQAILKAGYRRIGFMGTKMPLDYRARKRFEG 207 (344)
T ss_dssp CCH-HHHHHHHHCSSCEEEEEECSS------CCSSEEEEECHHHHHHHHHHHHHHHTCCSCCEEESSTTTCHHHHHHHHH
T ss_pred CCH-HHHHHHHhCCCCEEEEeCCCC------CCCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEecCcccCccHHHHHHH
Confidence 222 334556678999998743211 1223345566677788888888888999999998653 234456788
Q ss_pred HHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhh-c-CCceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEEe
Q 003958 184 LGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVA-L-TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIA 255 (784)
Q Consensus 184 l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~-~-~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi~ 255 (784)
+++.+++.|+.+.....+....+..+-...+.++. . .++++|+ +.+...+..+++++++.|+..|+-+-|.
T Consensus 208 f~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~vP~disvv 280 (344)
T 3kjx_A 208 FTEVLGKNGVEIEDREFYSGGSALAKGREMTQAMLERSPDLDFLY-YSNDMIAAGGLLYLLEQGIDIPGQIGLA 280 (344)
T ss_dssp HHHHHHHTTCCCSCEEECSSCCCHHHHHHHHHHHHHHSTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHhcCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 99999999876543332221122233333444432 2 3577766 4445667889999999998766544443
No 123
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=97.61 E-value=0.00061 Score=69.17 Aligned_cols=205 Identities=11% Similarity=-0.004 Sum_probs=122.4
Q ss_pred CCceEEEEEEee-c-CCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCc
Q 003958 28 RPSVVNIGALLS-F-STNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQD 105 (784)
Q Consensus 28 ~~~~i~IG~i~~-~-~~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~ 105 (784)
.....+||+++| . +..+-.....+++-+.++. |+++.+...+...+. ..+....+..+++.+||-...
T Consensus 8 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~--~~~~~~~l~~~~vdgiIi~~~ 77 (289)
T 3g85_A 8 SQSKPTIALYWSSDISVNIISRFLRGLQSKLAKQ--------NYNYNVVICPYKTDC--LHLEKGISKENSFDAAIIANI 77 (289)
T ss_dssp ---CCEEEEEEETTSCGGGHHHHHHHHHHHHHHT--------TTCSEEEEEEECTTC--GGGCGGGSTTTCCSEEEESSC
T ss_pred cCCCceEEEEeccccchHHHHHHHHHHHHHHHHc--------CCeEEEEecCCCchh--HHHHHHHHhccCCCEEEEecC
Confidence 445678999999 3 2333345566666666652 444444333222211 112233455568888876444
Q ss_pred hhhHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCC--CcchhHHH
Q 003958 106 AVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIAA 183 (784)
Q Consensus 106 s~~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~ 183 (784)
......+... ...++|+|..+...+ .+-.+......-+..+++.|.+.|.++|+++..+.. ......+.
T Consensus 78 ~~~~~~~~~~-~~~~iPvV~~~~~~~--------~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g 148 (289)
T 3g85_A 78 SNYDLEYLNK-ASLTLPIILFNRLSN--------KYSSVNVDNYKMGEKASLLFAKKRYKSAAAILTESLNDAMDNRNKG 148 (289)
T ss_dssp CHHHHHHHHH-CCCSSCEEEESCCCS--------SSEEEEECHHHHHHHHHHHHHHTTCCBCEEEECCCSSHHHHHHHHH
T ss_pred CcccHHHHHh-ccCCCCEEEECCCCC--------CCCEEEeCHHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHH
Confidence 3333333333 367999998765322 233456677777888889998899999999996543 34566789
Q ss_pred HHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcC--CceEEEEeccCCcHHHHHHHHHHcCCCCCCeE
Q 003958 184 LGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT--ESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYV 252 (784)
Q Consensus 184 l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~ 252 (784)
+++.+++.|+.+.....+....+..+....++++.+. .+++|+. .+...+..+++++++.|+..++-+
T Consensus 149 f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di 218 (289)
T 3g85_A 149 FIETCHKNGIKISENHIIAAENSIHGGVDAAKKLMKLKNTPKALFC-NSDSIALGVISVLNKRQISIPDDI 218 (289)
T ss_dssp HHHHHHHTTCBCCGGGEEECCSSHHHHHHHHHHHTTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHHHHcCCCCChhheeccCCCHHHHHHHHHHHHcCCCCCcEEEE-cCCHHHHHHHHHHHHcCCCCCCce
Confidence 9999999887653221112112334444555555443 4666553 445567789999999998765433
No 124
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=97.61 E-value=0.0028 Score=65.13 Aligned_cols=200 Identities=8% Similarity=-0.020 Sum_probs=126.6
Q ss_pred eEEEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccC-chhh
Q 003958 31 VVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQ-DAVT 108 (784)
Q Consensus 31 ~i~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~-~s~~ 108 (784)
..+||+++|.. ..+-.....+++.+.++. |+++. +.++..++....+....++.+++.+||-.. ....
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 71 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESL--------GAKVF--VQSANGNEETQMSQIENMINRGVDVLVIIPYNGQV 71 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHT--------SCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTS
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEE--EECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhh
Confidence 45799999863 333446667777777762 45544 456677887777777888888888887533 3333
Q ss_pred HHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHH-HcCCcEEEEEEEcCC--CcchhHHHHH
Q 003958 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVD-HYGWREVIAIYVDDD--HGRNGIAALG 185 (784)
Q Consensus 109 ~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~-~~~w~~v~ii~~d~~--~g~~~~~~l~ 185 (784)
.......+...++|+|......+. ... ...+.......+..+++.|. ..|-++|++|..... ......+.++
T Consensus 72 ~~~~~~~~~~~~iPvV~~~~~~~~---~~~--~~~V~~D~~~~g~~a~~~L~~~~G~~~i~~i~g~~~~~~~~~R~~Gf~ 146 (313)
T 3m9w_A 72 LSNVVKEAKQEGIKVLAYDRMIND---ADI--DFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQM 146 (313)
T ss_dssp CHHHHHHHHTTTCEEEEESSCCTT---SCC--SEEEEECHHHHHHHHHHHHHHHCSSEEEEEEESCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHCCCeEEEECCcCCC---CCc--eEEEecCHHHHHHHHHHHHHHhCCCCcEEEEECCCCCccHHHHHHHHH
Confidence 334556677789999987554321 111 13445566777888888877 899999999985433 3345578888
Q ss_pred HHHhcc----CcEEEEeeccCCCCChhHHHHHHHHhh-c--CCceEEEEeccCCcHHHHHHHHHHcCCC
Q 003958 186 DTLAAK----RCRISFKAPLSVEATEDEITDLLVKVA-L--TESRIIVVHTHYNRGPVVFHVAQYLGML 247 (784)
Q Consensus 186 ~~l~~~----gi~v~~~~~~~~~~~~~d~~~~l~~l~-~--~~~~vIvl~~~~~~~~~~~~~a~~~g~~ 247 (784)
+.+++. ++.+..... ....+.......++++. + .++++|+. .....+..+++++++.|+.
T Consensus 147 ~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~ 213 (313)
T 3m9w_A 147 KVLKPYVDSGKIKVVGDQW-VDGWLPENALKIMENALTANNNKIDAVVA-SNDATAGGAIQALSAQGLS 213 (313)
T ss_dssp HHHHHHHHTTSEEEEEEEE-CGGGCHHHHHHHHHHHHHHTTTCCCEEEE-SSHHHHHHHHHHHHTTTCT
T ss_pred HHHHhhccCCCEEEEeecc-CCCcCHHHHHHHHHHHHHhCCCCeeEEEE-CCCchHHHHHHHHHHcCCC
Confidence 888876 566653322 11123333334444433 2 35666554 3445677899999998875
No 125
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=97.61 E-value=0.0038 Score=63.47 Aligned_cols=205 Identities=13% Similarity=0.067 Sum_probs=122.5
Q ss_pred CceEEEEEEeecC------CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEc
Q 003958 29 PSVVNIGALLSFS------TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIG 102 (784)
Q Consensus 29 ~~~i~IG~i~~~~------~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiG 102 (784)
...-+||+++|.. ..+-.....+++-+.++ . |+.+ .+.++..+.....+....+..+++.+||-
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~---~-----g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdGiI~ 74 (295)
T 3hcw_A 5 NQTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQ---H-----GYGT--QTTVSNNMNDLMDEVYKMIKQRMVDAFIL 74 (295)
T ss_dssp CCSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHT---T-----TCEE--EECCCCSHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCcEEEEEeecCCcccccChHHHHHHHHHHHHHHH---C-----CCEE--EEEcCCCChHHHHHHHHHHHhCCcCEEEE
Confidence 3466899999542 22222334444444433 2 5554 44555555555555555666778888875
Q ss_pred cCchhhHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCC--Ccchh
Q 003958 103 PQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNG 180 (784)
Q Consensus 103 p~~s~~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~ 180 (784)
...... ......+...++|+|..+...+.. . ..+..+......-+..+++.|...|.++|++|..... .....
T Consensus 75 ~~~~~~-~~~~~~l~~~~iPvV~i~~~~~~~--~--~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R 149 (295)
T 3hcw_A 75 LYSKEN-DPIKQMLIDESMPFIVIGKPTSDI--D--HQFTHIDNDNILASENLTRHVIEQGVDELIFITEKGNFEVSKDR 149 (295)
T ss_dssp SCCCTT-CHHHHHHHHTTCCEEEESCCCSSG--G--GGSCEEEECHHHHHHHHHHHHHHHCCSEEEEEEESSCCHHHHHH
T ss_pred cCcccC-hHHHHHHHhCCCCEEEECCCCccc--c--CCceEEecCcHHHHHHHHHHHHHcCCccEEEEcCCccchhHHHH
Confidence 332222 233455667899999875432211 0 0223344566667778888888889999999996543 34566
Q ss_pred HHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhc-----CCceEEEEeccCCcHHHHHHHHHHcCCCCCCeE
Q 003958 181 IAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL-----TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYV 252 (784)
Q Consensus 181 ~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~-----~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~ 252 (784)
.+.+++.+++.|+.+.... .. .+..+....++++.+ ..+++|+ +.+...+..+++++++.|+..++-+
T Consensus 150 ~~Gf~~al~~~g~~~~~~~-~~--~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di 222 (295)
T 3hcw_A 150 IQGFETVASQFNLDYQIIE-TS--NEREVILNYMQNLHTRLKDPNIKQAII-SLDAMLHLAILSVLYELNIEIPKDV 222 (295)
T ss_dssp HHHHHHHHHHTTCEEEEEE-EC--SCHHHHHHHHHHHHHHHTCTTSCEEEE-ESSHHHHHHHHHHHHHTTCCTTTTE
T ss_pred HHHHHHHHHHcCCCeeEEe-cc--CCHHHHHHHHHHHHhhcccCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCce
Confidence 8899999999998765221 11 233333333444322 2567755 4445567889999999998765433
No 126
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=97.59 E-value=0.0016 Score=66.37 Aligned_cols=208 Identities=12% Similarity=0.064 Sum_probs=127.8
Q ss_pred eEEEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCchh--
Q 003958 31 VVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAV-- 107 (784)
Q Consensus 31 ~i~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s~-- 107 (784)
.-+||++.|.. ..+-.....+++-+.++ .|+++. +.++..++....+....++.+++.+||-.....
T Consensus 15 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~ 84 (298)
T 3tb6_A 15 NKTIGVLTTYISDYIFPSIIRGIESYLSE--------QGYSML--LTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSAL 84 (298)
T ss_dssp CCEEEEEESCSSSTTHHHHHHHHHHHHHH--------TTCEEE--EEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTS
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHHH--------CCCEEE--EEeCCCChHHHHHHHHHHHHCCCCEEEEecccccc
Confidence 36899999874 33334556666666665 255554 445666777777777788888898887533221
Q ss_pred --hHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCC-CcchhHHHH
Q 003958 108 --TSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD-HGRNGIAAL 184 (784)
Q Consensus 108 --~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~-~g~~~~~~l 184 (784)
........+...++|+|......+.. .+..+......-+..++++|...|.++|+++..... ......+.+
T Consensus 85 ~~~~~~~~~~~~~~~iPvV~~~~~~~~~------~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~R~~gf 158 (298)
T 3tb6_A 85 QTPNIGYYLNLEKNGIPFAMINASYAEL------AAPSFTLDDVKGGMMAAEHLLSLGHTHMMGIFKADDTQGVKRMNGF 158 (298)
T ss_dssp CCTTHHHHHHHHHTTCCEEEESSCCTTC------SSCEEEECHHHHHHHHHHHHHHTTCCSEEEEEESSSHHHHHHHHHH
T ss_pred cCCcHHHHHHHHhcCCCEEEEecCcCCC------CCCEEEeCcHHHHHHHHHHHHHCCCCcEEEEcCCCCccHHHHHHHH
Confidence 23344556677899999875533211 122345566777888889998899999999986543 334567889
Q ss_pred HHHHhccCcEEEEeeccCCCC-Ch-hHHHHHHHHhh-cC-C--ceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEEe
Q 003958 185 GDTLAAKRCRISFKAPLSVEA-TE-DEITDLLVKVA-LT-E--SRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIA 255 (784)
Q Consensus 185 ~~~l~~~gi~v~~~~~~~~~~-~~-~d~~~~l~~l~-~~-~--~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi~ 255 (784)
++.+++.|+.+.......... .. ......+.++. .. . +++|+. .....+..+++++++.|+..++-+-|.
T Consensus 159 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vv 234 (298)
T 3tb6_A 159 IQAHRERELFPSPDMIVTFTTEEKESKLLEKVKATLEKNSKHMPTAILC-YNDEIALKVIDMLREMDLKVPEDMSIV 234 (298)
T ss_dssp HHHHHHTTCCCCGGGEEEECHHHHTTHHHHHHHHHHHHTTTSCCSEEEC-SSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHcCCCCCcceEEEecccchhhhHHHHHHHHHhcCCCCCCeEEEE-eCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 999998887643211111000 00 11123333332 22 2 666553 445567789999999998765444333
No 127
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=97.58 E-value=0.0013 Score=66.93 Aligned_cols=204 Identities=9% Similarity=-0.010 Sum_probs=121.2
Q ss_pred ceEEEEEEeec-----CCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccC
Q 003958 30 SVVNIGALLSF-----STNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQ 104 (784)
Q Consensus 30 ~~i~IG~i~~~-----~~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~ 104 (784)
..-+||+++|. +..+-.....+++-+.++ .|+.+.+...+..... ......+..+++.+||-..
T Consensus 5 ~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~~~~~~~~~---~~~~~~l~~~~vdGiIi~~ 73 (294)
T 3qk7_A 5 RTDAIALAYPSRPRVLNNSTFLEMISWIGIELGK--------RGLDLLLIPDEPGEKY---QSLIHLVETRRVDALIVAH 73 (294)
T ss_dssp CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHH--------TTCEEEEEEECTTCCC---HHHHHHHHHTCCSEEEECS
T ss_pred ccceEEEEecCCCccccChhHHHHHHHHHHHHHH--------CCCEEEEEeCCChhhH---HHHHHHHHcCCCCEEEEeC
Confidence 45689999983 222223445555555554 2677776655432122 2223334456888876533
Q ss_pred chhhHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCC--CcchhHH
Q 003958 105 DAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIA 182 (784)
Q Consensus 105 ~s~~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~ 182 (784)
..... .....+...++|+|......+ + +.+-.+......-+..+++.|...|.++|++|..... ......+
T Consensus 74 ~~~~~-~~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~ 146 (294)
T 3qk7_A 74 TQPED-FRLQYLQKQNFPFLALGRSHL---P---KPYAWFDFDNHAGASLAVKRLLELGHQRIAFVSTDARISYVDQRLQ 146 (294)
T ss_dssp CCSSC-HHHHHHHHTTCCEEEESCCCC---S---SCCEEEEECHHHHHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHH
T ss_pred CCCCh-HHHHHHHhCCCCEEEECCCCC---C---CCCCEEEcChHHHHHHHHHHHHHCCCceEEEEeCCcccchHHHHHH
Confidence 22222 334556678999998755321 1 2233455667777888889998899999999987643 3345688
Q ss_pred HHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhc--CCceEEEEeccCCcHHHHHHHHHHcCCCCCCeE
Q 003958 183 ALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYV 252 (784)
Q Consensus 183 ~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~ 252 (784)
.+++.+++.|+.+..........+..+-...++++.+ ..+++|+. .+...+..+++++++.|+..++-+
T Consensus 147 Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~di 217 (294)
T 3qk7_A 147 GYVQTMSEAGLMPLAGYLQKADPTRPGGYLAASRLLALEVPPTAIIT-DCNMLGDGVASALDKAGLLGGEGI 217 (294)
T ss_dssp HHHHHHHTTTCCCCTTCEEEECSSHHHHHHHHHHHHHSSSCCSEEEE-SSHHHHHHHHHHHHHTTCSSTTSC
T ss_pred HHHHHHHHCCCCCChhHeecCCCCHHHHHHHHHHHHcCCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCce
Confidence 9999999988764321111111223333344444433 35666554 445667789999999998766443
No 128
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=97.57 E-value=0.0029 Score=64.10 Aligned_cols=205 Identities=15% Similarity=0.078 Sum_probs=123.8
Q ss_pred CceEEEEEEeecCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCchhh
Q 003958 29 PSVVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVT 108 (784)
Q Consensus 29 ~~~i~IG~i~~~~~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s~~ 108 (784)
...-+||++++.+..+-.....+++-+.++. |+++.+...+...+ -.+....++.+++.+||-......
T Consensus 10 ~~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~---~~~~~~~l~~~~vdgiIi~~~~~~ 78 (289)
T 3k9c_A 10 ASSRLLGVVFELQQPFHGDLVEQIYAAATRR--------GYDVMLSAVAPSRA---EKVAVQALMRERCEAAILLGTRFD 78 (289)
T ss_dssp ---CEEEEEEETTCHHHHHHHHHHHHHHHHT--------TCEEEEEEEBTTBC---HHHHHHHHTTTTEEEEEEETCCCC
T ss_pred CCCCEEEEEEecCCchHHHHHHHHHHHHHHC--------CCEEEEEeCCCCHH---HHHHHHHHHhCCCCEEEEECCCCC
Confidence 3466899998443333344556666665552 56666655443333 234555677778888875433222
Q ss_pred HHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCC-CcchhHHHHHHH
Q 003958 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD-HGRNGIAALGDT 187 (784)
Q Consensus 109 ~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~-~g~~~~~~l~~~ 187 (784)
...+ ..+.. ++|+|..+...+ + +.+..+......-+..+++.|...|.++|+++..... ......+.+++.
T Consensus 79 ~~~~-~~~~~-~iPvV~i~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~a 150 (289)
T 3k9c_A 79 TDEL-GALAD-RVPALVVARASG---L---PGVGAVRGDDVAGITLAVDHLTELGHRNIAHIDGADAPGGADRRAGFLAA 150 (289)
T ss_dssp HHHH-HHHHT-TSCEEEESSCCS---S---TTSEEEEECHHHHHHHHHHHHHHTTCCSEEEECCTTSTTHHHHHHHHHHH
T ss_pred HHHH-HHHHc-CCCEEEEcCCCC---C---CCCCEEEeChHHHHHHHHHHHHHCCCCcEEEEeCCCCccHHHHHHHHHHH
Confidence 2333 33445 999998754332 1 2234455667777888889988899999999986543 345667889999
Q ss_pred HhccCcEEEEeeccCCCCChhHHHHHHHHhhc--CCceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEE
Q 003958 188 LAAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWI 254 (784)
Q Consensus 188 l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi 254 (784)
+++.|+.+... .+....+..+-...++++.+ ..+++|+. .+...+..+++++++.|+..|+-+-|
T Consensus 151 l~~~g~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~vP~di~v 217 (289)
T 3k9c_A 151 MDRHGLSASAT-VVTGGTTETEGAEGMHTLLEMPTPPTAVVA-FNDRCATGVLDLLVRSGRDVPADISV 217 (289)
T ss_dssp HHHTTCGGGEE-EECCCSSHHHHHHHHHHHHTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHCCCCCCcc-EEECCCCHHHHHHHHHHHHcCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCCceEE
Confidence 99988763221 12222233444455555543 35666544 44456778999999999876544433
No 129
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=97.51 E-value=0.0018 Score=66.14 Aligned_cols=202 Identities=14% Similarity=0.057 Sum_probs=123.4
Q ss_pred CceEEEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCchh
Q 003958 29 PSVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAV 107 (784)
Q Consensus 29 ~~~i~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s~ 107 (784)
...-+||++.|.. ..+-.....+++-+.++. |+++. +.++..++....+....++.+++.+||-.....
T Consensus 13 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 82 (303)
T 3kke_A 13 SRSGTIGLIVPDVNNAVFADMFSGVQMAASGH--------STDVL--LGQIDAPPRGTQQLSRLVSEGRVDGVLLQRRED 82 (303)
T ss_dssp ----CEEEEESCTTSTTHHHHHHHHHHHHHHT--------TCCEE--EEECCSTTHHHHHHHHHHHSCSSSEEEECCCTT
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 4466799999864 333345566666666652 45444 445556666666666677778898887543333
Q ss_pred hHH-HHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCC--CcchhHHHH
Q 003958 108 TSH-VVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIAAL 184 (784)
Q Consensus 108 ~~~-~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l 184 (784)
... .+..+ .. ++|+|..+...+. ..+ .+......-+..+++.|...|.++|++|..... ......+.+
T Consensus 83 ~~~~~~~~l-~~-~iPvV~i~~~~~~----~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 153 (303)
T 3kke_A 83 FDDDMLAAV-LE-GVPAVTINSRVPG----RVG---SVILDDQKGGGIATEHLITLGHSRIAFISGTAIHDTAQRRKEGY 153 (303)
T ss_dssp CCHHHHHHH-HT-TSCEEEESCCCTT----CCC---EEEECHHHHHHHHHHHHHHTTCCSEEEEESCSSCHHHHHHHHHH
T ss_pred CcHHHHHHH-hC-CCCEEEECCcCCC----CCC---EEEECcHHHHHHHHHHHHHCCCCeEEEEeCCCcCccHHHHHHHH
Confidence 222 34344 44 9999987654332 222 345566677778888888899999999986433 345667889
Q ss_pred HHHHhccCcEEEEeeccCCCCChhHHHHHHHHh-----hc--CCceEEEEeccCCcHHHHHHHHHHcCCCCCC
Q 003958 185 GDTLAAKRCRISFKAPLSVEATEDEITDLLVKV-----AL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGTG 250 (784)
Q Consensus 185 ~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l-----~~--~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~ 250 (784)
++.+++.|+.+..........+..+-...++++ .+ ..+++|+. .+...+..+++++++.|+..++
T Consensus 154 ~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~ 225 (303)
T 3kke_A 154 LETLASAGLRSEAAWVVDAGWEADAGSAALNTLYRGANLGKPDGPTAVVV-ASVNAAVGALSTALRLGLRVPE 225 (303)
T ss_dssp HHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHHHHCTTSTTSCSEEEE-SSHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHHHcCCCCCcceEEecCCChHHHHHHHHHhcchhhhcCCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCC
Confidence 999999987653211111112333334455555 33 34666554 4445677899999999987553
No 130
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=97.48 E-value=0.00042 Score=72.62 Aligned_cols=66 Identities=17% Similarity=0.045 Sum_probs=46.1
Q ss_pred CCCChHhhhhCCCceEEeeCchHHHHHHh---hcccCccCcee-CCCHHHHHHHHhcCCcCCCeeEEEechhhhHH
Q 003958 683 PIKGIDSLRSSNYPIGYQVNSFARNYLVD---ELNIDESRLVP-LNSPEEYAKALKDGPHKGGVAAVVDDRAYAEL 754 (784)
Q Consensus 683 ~i~~~~dl~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~ 754 (784)
+|++++||+ |++||+..|+..+.++.. ..+.+...+.. ..+..+.+.+|++ |++||++...+.+..
T Consensus 110 ~i~s~~DLk--Gk~I~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~~~~~~~~al~~----G~vDa~~~~~~~~~~ 179 (348)
T 3uif_A 110 TAKSIKDLK--GKKIALHRGRPWELAFSNLLQSEGLTFKDFKIVNVNPQVGAAALAS----GTVDGFFSLFDSYIL 179 (348)
T ss_dssp CCCSGGGGT--TSEEEECTTSTHHHHHHHHHHHTTCCGGGSEEECCCHHHHHHHHHH----TSSSEEEESTTHHHH
T ss_pred CCCCHHHcC--CCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEECCHHHHHHHHHc----CCCCEEEechHHHHH
Confidence 799999998 999999888765444433 22332222221 2367789999999 899999888776644
No 131
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=97.46 E-value=0.0038 Score=65.20 Aligned_cols=203 Identities=12% Similarity=0.046 Sum_probs=117.8
Q ss_pred ceEEEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCchhh
Q 003958 30 SVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVT 108 (784)
Q Consensus 30 ~~i~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s~~ 108 (784)
...+||++.|.. ..+-.....+++.+.++ . |+++.+ .++..++....+....++.+++.+||-......
T Consensus 65 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~---~-----g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 134 (348)
T 3bil_A 65 RSNTIGVIVPSLINHYFAAMVTEIQSTASK---A-----GLATII--TNSNEDATTMSGSLEFLTSHGVDGIICVPNEEC 134 (348)
T ss_dssp ---CEEEEESCSSSHHHHHHHHHHHHHHHH---T-----TCCEEE--EECTTCHHHHHHHHHHHHHTTCSCEEECCCGGG
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHH---c-----CCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 456799999863 22233445566655554 2 455544 455566666566666777778888775443322
Q ss_pred HHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCC--CcchhHHHHHH
Q 003958 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIAALGD 186 (784)
Q Consensus 109 ~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~~ 186 (784)
. .....+...++|+|......+. ....+ .+......-+..+++.|...|.++|++|..... ......+.+++
T Consensus 135 ~-~~~~~l~~~~iPvV~i~~~~~~--~~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 208 (348)
T 3bil_A 135 A-NQLEDLQKQGMPVVLVDRELPG--DSTIP---TATSNPQPGIAAAVELLAHNNALPIGYLSGPMDTSTGRERLEDFKA 208 (348)
T ss_dssp H-HHHHHHHHC-CCEEEESSCCSC--C-CCC---EEEEECHHHHHHHHHHHHHTTCCSEEEECCCTTSHHHHHHHHHHHH
T ss_pred h-HHHHHHHhCCCCEEEEcccCCC--CCCCC---EEEeChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHH
Confidence 2 2334455679999987543221 01222 334455566777888888889999999986532 34556788999
Q ss_pred HHhccCcEEEEeeccCCCCChhHHHHHHHHhhcC-CceEEEEeccCCcHHHHHHHHHHcCCCCCCeE
Q 003958 187 TLAAKRCRISFKAPLSVEATEDEITDLLVKVALT-ESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYV 252 (784)
Q Consensus 187 ~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~-~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~ 252 (784)
.+++.|+..... +....+..+-...++++.+. .+ + |++.+...+..+++++++.|+..|+-+
T Consensus 209 al~~~g~~~~~v--~~~~~~~~~~~~~~~~ll~~~~~-a-i~~~nD~~A~g~~~al~~~G~~vP~di 271 (348)
T 3bil_A 209 ACANSKIGEQLV--FLGGYEQSVGFEGATKLLDQGAK-T-LFAGDSMMTIGVIEACHKAGLVIGKDV 271 (348)
T ss_dssp HHHHTTCCCCEE--ECCCSSHHHHHHHHHHHHHTTCS-E-EEESSHHHHHHHHHHHHHTTCCBTTTB
T ss_pred HHHHcCcCccEE--EcCCCCHHHHHHHHHHHHcCCCC-E-EEEcChHHHHHHHHHHHHcCCCCCCCe
Confidence 999988622111 11112223333444554333 34 3 334555567889999999998765433
No 132
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=97.44 E-value=0.0069 Score=63.42 Aligned_cols=207 Identities=11% Similarity=0.069 Sum_probs=125.2
Q ss_pred ceEEEEEEeecCC-cchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCchhh
Q 003958 30 SVVNIGALLSFST-NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVT 108 (784)
Q Consensus 30 ~~i~IG~i~~~~~-~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s~~ 108 (784)
..-.||++.|... .+-.....+++-+.++ .|+.+. +.++..++....+....++.+++.+||-......
T Consensus 69 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~ 138 (355)
T 3e3m_A 69 RSGFVGLLLPSLNNLHFAQTAQSLTDVLEQ--------GGLQLL--LGYTAYSPEREEQLVETMLRRRPEAMVLSYDGHT 138 (355)
T ss_dssp --CEEEEEESCSBCHHHHHHHHHHHHHHHH--------TTCEEE--EEECTTCHHHHHHHHHHHHHTCCSEEEEECSCCC
T ss_pred CCCEEEEEeCCCCchHHHHHHHHHHHHHHH--------CCCEEE--EEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 4567999998642 2222344555555544 256554 4456667776666667777788887764332222
Q ss_pred HHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCCC---cchhHHHHH
Q 003958 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDH---GRNGIAALG 185 (784)
Q Consensus 109 ~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~---g~~~~~~l~ 185 (784)
. .....+...++|+|...... .+ +....+......-+..+++.|...|.++|++|...... .....+.++
T Consensus 139 ~-~~~~~l~~~~iPvV~i~~~~---~~---~~~~~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~R~~Gf~ 211 (355)
T 3e3m_A 139 E-QTIRLLQRASIPIVEIWEKP---AH---PIGHTVGFSNERAAYDMTNALLARGFRKIVFLGEKDDDWTRGAARRAGFK 211 (355)
T ss_dssp H-HHHHHHHHCCSCEEEESSCC---SS---CSSEEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCTTSHHHHHHHHHH
T ss_pred H-HHHHHHHhCCCCEEEECCcc---CC---CCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEccCcccChhHHHHHHHHH
Confidence 2 33455667899999864221 11 22335566667777888889988999999999975432 456788999
Q ss_pred HHHhccCcEEEEeecc-CCCCChhHHHHHHHHhhc--CCceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEE
Q 003958 186 DTLAAKRCRISFKAPL-SVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWI 254 (784)
Q Consensus 186 ~~l~~~gi~v~~~~~~-~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi 254 (784)
+.+++.|+.+.....+ ....+..+-...+.++.+ ..+++|+. .+...+..+++++++.|+..|+-+-|
T Consensus 212 ~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~G~~vP~disv 282 (355)
T 3e3m_A 212 RAMREAGLNPDQEIRLGAPPLSIEDGVAAAELILQEYPDTDCIFC-VSDMPAFGLLSRLKSIGVAVPEQVSV 282 (355)
T ss_dssp HHHHHTTSCSCCEEEESCSSCCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHHTCCTTTTCEE
T ss_pred HHHHHCCcCCCccEEEecCCCCHHHHHHHHHHHHcCCCCCcEEEE-CChHHHHHHHHHHHHcCCCCCCceEE
Confidence 9999998764311111 111122333334444332 35677554 45556778999999999876544433
No 133
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=97.41 E-value=0.0024 Score=64.20 Aligned_cols=201 Identities=10% Similarity=0.044 Sum_probs=116.4
Q ss_pred CceEEEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCchh
Q 003958 29 PSVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAV 107 (784)
Q Consensus 29 ~~~i~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s~ 107 (784)
....+||+++|.. ..+-.....+++-+.++. |+++. +.++..++....+....++.+++.+||-...+
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~~- 74 (277)
T 3e61_A 6 RKSKLIGLLLPDMSNPFFTLIARGVEDVALAH--------GYQVL--IGNSDNDIKKAQGYLATFVSHNCTGMISTAFN- 74 (277)
T ss_dssp ----CEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCCEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECGGG-
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCCHHHHHHHHHHHHhCCCCEEEEecCC-
Confidence 3456799999864 223334455665555552 45444 45666677766667777778889888754422
Q ss_pred hHHHHHH-hhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCC--CcchhHHHH
Q 003958 108 TSHVVSH-VANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIAAL 184 (784)
Q Consensus 108 ~~~~va~-~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l 184 (784)
. .... .+...++|+|..+...+. +. .+.......+..+++.|.+.|.++|+++..... ......+.+
T Consensus 75 -~-~~~~~~l~~~~iPvV~~~~~~~~------~~--~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf 144 (277)
T 3e61_A 75 -E-NIIENTLTDHHIPFVFIDRINNE------HN--GISTNHFKGGQLQAEVVRKGKGKNVLIVHENLLIDAFHQRVQGI 144 (277)
T ss_dssp -H-HHHHHHHHHC-CCEEEGGGCC-----------------HHHHHHHHHHHHHHTTCCSEEEEESCTTSHHHHHHHHHH
T ss_pred -h-HHHHHHHHcCCCCEEEEeccCCC------CC--eEEechHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHH
Confidence 2 2234 566779999997654321 11 455666677788888888889999999986532 344667889
Q ss_pred HHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEEe
Q 003958 185 GDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIA 255 (784)
Q Consensus 185 ~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi~ 255 (784)
++.+++.|+.+.. ...........+.. +++ ...+++|+. .....+..++++++++|+..++-+-|.
T Consensus 145 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~-l~~--~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vi 210 (277)
T 3e61_A 145 KYILDQQRIDYKM-LEATLLDNDKKFID-LIK--ELSIDSIIC-SNDLLAINVLGIVQRYHFKVPAEIQII 210 (277)
T ss_dssp HHHHHC---CEEE-EEGGGGGSHHHHHH-HHH--HHTCCEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHcCCCccc-eecCCCCHHHHHHH-hhc--CCCCCEEEE-CCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 9999999877654 11111111122222 221 245676554 445567789999999998765544443
No 134
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=97.39 E-value=0.0047 Score=62.04 Aligned_cols=199 Identities=10% Similarity=-0.051 Sum_probs=116.2
Q ss_pred CceEEEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCchh
Q 003958 29 PSVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAV 107 (784)
Q Consensus 29 ~~~i~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s~ 107 (784)
....+||++.|.. ..+-.....+++-+.++ .|+++.+... ..++.... ++ ++.+||-.....
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~~~--~~~~~~~~----~~---~vdgiI~~~~~~ 68 (277)
T 3cs3_A 6 RQTNIIGVYLADYGGSFYGELLEGIKKGLAL--------FDYEMIVCSG--KKSHLFIP----EK---MVDGAIILDWTF 68 (277)
T ss_dssp CCCCEEEEEECSSCTTTHHHHHHHHHHHHHT--------TTCEEEEEES--TTTTTCCC----TT---TCSEEEEECTTS
T ss_pred cCCcEEEEEecCCCChhHHHHHHHHHHHHHH--------CCCeEEEEeC--CCCHHHHh----hc---cccEEEEecCCC
Confidence 4467899999863 22323445555555543 2566655433 22221111 01 677766432222
Q ss_pred hHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCC--CcchhHHHHH
Q 003958 108 TSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIAALG 185 (784)
Q Consensus 108 ~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~ 185 (784)
....+ ..+...++|+|......+ + +.+..+..+....+..+++.|...|.++|++|..+.. ......+.++
T Consensus 69 ~~~~~-~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 141 (277)
T 3cs3_A 69 PTKEI-EKFAERGHSIVVLDRTTE---H---RNIRQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPEKGYDSQERLAVST 141 (277)
T ss_dssp CHHHH-HHHHHTTCEEEESSSCCC---S---TTEEEEEECHHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHH
T ss_pred CHHHH-HHHHhcCCCEEEEecCCC---C---CCCCEEEeCcHHHHHHHHHHHHHcCCceEEEEeCCccCccHHHHHHHHH
Confidence 22223 344558999998754322 1 2344555666677777888888889999999986533 3456678899
Q ss_pred HHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcC---CceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEEe
Q 003958 186 DTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT---ESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIA 255 (784)
Q Consensus 186 ~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~---~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi~ 255 (784)
+.+++.|+.+. ...-. .+..+-...++++.+. ++++|+. .....+..+++++++.|+..++-+.|.
T Consensus 142 ~~l~~~g~~~~-~~~~~--~~~~~~~~~~~~~l~~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vv 210 (277)
T 3cs3_A 142 RELTRFGIPYE-IIQGD--FTEPSGYAAAKKILSQPQTEPVDVFA-FNDEMAIGVYKYVAETNYQMGKDIRII 210 (277)
T ss_dssp HHHHHTTCCEE-EEECC--SSHHHHHHHHHHHTTSCCCSSEEEEE-SSHHHHHHHHHHHTTSSCCBTTTEEEE
T ss_pred HHHHHcCCCee-EEeCC--CChhHHHHHHHHHHhcCCCCCcEEEE-cChHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 99999997665 11111 2333344555555443 5666554 444557788999999998655444443
No 135
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=97.33 E-value=0.0043 Score=64.14 Aligned_cols=205 Identities=8% Similarity=-0.054 Sum_probs=125.5
Q ss_pred eEEEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEc-cCchhh
Q 003958 31 VVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIG-PQDAVT 108 (784)
Q Consensus 31 ~i~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiG-p~~s~~ 108 (784)
..+||++.|.. ..+-.....+++-+.++. |+++. +.++..++....+....++.+++.+||- |..+..
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~ 72 (330)
T 3uug_A 3 KGSVGIAMPTKSSARWIDDGNNIVKQLQEA--------GYKTD--LQYADDDIPNQLSQIENMVTKGVKVLVIASIDGTT 72 (330)
T ss_dssp CCEEEEEECCSSSTHHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHHTCSEEEECCSSGGG
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHHHHHc--------CCEEE--EeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCchh
Confidence 56799999975 333334566666666652 55544 4456778888788888888889998864 444444
Q ss_pred HHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHH-------cCCcEEEEEEEcCC--Ccch
Q 003958 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDH-------YGWREVIAIYVDDD--HGRN 179 (784)
Q Consensus 109 ~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~-------~~w~~v~ii~~d~~--~g~~ 179 (784)
.......+...++|+|......+.. .... ..+.......+..++++|.. .|.++|+++..... ....
T Consensus 73 ~~~~~~~~~~~giPvV~~~~~~~~~--~~~~--~~V~~D~~~~g~~a~~~l~~~~~~~~~~G~~~i~~i~g~~~~~~~~~ 148 (330)
T 3uug_A 73 LSDVLKQAGEQGIKVIAYDRLIRNS--GDVS--YYATFDNFQVGVLQATSITDKLGLKDGKGPFNIELFGGSPDDNNAFF 148 (330)
T ss_dssp GHHHHHHHHHTTCEEEEESSCCCSC--TTCC--EEEEECHHHHHHHHHHHHHHHHTGGGTCCCEEEEECBCCTTCHHHHH
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCC--Ccee--EEEEeCHHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCCchHHH
Confidence 4455566778899999876543221 1112 33445666777778888766 68889999975432 3345
Q ss_pred hHHHHHHHHhcc---C-cEEEEee-----ccCCCCChhHHHHHHHHhhc-----CCceEEEEeccCCcHHHHHHHHHHcC
Q 003958 180 GIAALGDTLAAK---R-CRISFKA-----PLSVEATEDEITDLLVKVAL-----TESRIIVVHTHYNRGPVVFHVAQYLG 245 (784)
Q Consensus 180 ~~~~l~~~l~~~---g-i~v~~~~-----~~~~~~~~~d~~~~l~~l~~-----~~~~vIvl~~~~~~~~~~~~~a~~~g 245 (784)
..+.+++.+++. | +.+.... ......+...-...++++.+ ..+++|+ +.....+..+++++++.|
T Consensus 149 R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~nd~~A~g~~~al~~~g 227 (330)
T 3uug_A 149 FYDGAMSVLKPYIDSGKLVVKSGQMGMDKVGTLRWDPATAQARMDNLLSAYYTDAKVDAVL-SPYDGLSIGIISSLKGVG 227 (330)
T ss_dssp HHHHHHHHHHHHHHHTSEECTTCCCSHHHHBCGGGCHHHHHHHHHHHHHHHCSSSCCCEEE-CSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccccCceEEeecccccccccCCCCCHHHHHHHHHHHHHhcCCCCCeEEEE-ECCCchHHHHHHHHHHcC
Confidence 677888888776 3 4443211 00111122222333333322 4566644 344556778999999999
Q ss_pred CCCCC
Q 003958 246 MLGTG 250 (784)
Q Consensus 246 ~~~~~ 250 (784)
+..|+
T Consensus 228 ~~vP~ 232 (330)
T 3uug_A 228 YGTKD 232 (330)
T ss_dssp CSSSS
T ss_pred CCCCC
Confidence 87653
No 136
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=97.30 E-value=0.0045 Score=62.23 Aligned_cols=199 Identities=9% Similarity=-0.007 Sum_probs=127.0
Q ss_pred CCceEEEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCch
Q 003958 28 RPSVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDA 106 (784)
Q Consensus 28 ~~~~i~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s 106 (784)
....-+||+++|.. ..+-.....+++-+.++. |+++ +.+.++..++..-.+....++.+++.+||-..
T Consensus 7 ~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~-~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~-- 75 (277)
T 3hs3_A 7 QKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKE--------GYTA-LISFSTNSDVKKYQNAIINFENNNVDGIITSA-- 75 (277)
T ss_dssp -CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCEE-EEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC--
T ss_pred cCCCCEEEEEeCCCCChhHHHHHHHHHHHHHHC--------CCCE-EEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc--
Confidence 34567899999864 223334455666555552 5540 34556677777766667777788888887533
Q ss_pred hhHHHHHHhhhcCCccEEecccC-CCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCC--CcchhHHH
Q 003958 107 VTSHVVSHVANELQVPLLSFSAT-DPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIAA 183 (784)
Q Consensus 107 ~~~~~va~~~~~~~ip~Is~~a~-~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~ 183 (784)
.....+...++|+|..... .+ + +.+ .+......-+..+++.|. .|.++|+++..... ......+.
T Consensus 76 ----~~~~~~~~~~iPvV~~~~~~~~---~---~~~-~V~~D~~~~g~~a~~~L~-~G~~~I~~i~~~~~~~~~~~R~~G 143 (277)
T 3hs3_A 76 ----FTIPPNFHLNTPLVMYDSANIN---D---DIV-RIVSNNTKGGKESIKLLS-KKIEKVLIQHWPLSLPTIRERIEA 143 (277)
T ss_dssp ----CCCCTTCCCSSCEEEESCCCCC---S---SSE-EEEECHHHHHHHHHHTSC-TTCCEEEEEESCTTSHHHHHHHHH
T ss_pred ----hHHHHHHhCCCCEEEEcccccC---C---CCE-EEEEChHHHHHHHHHHHH-hCCCEEEEEeCCCcCccHHHHHHH
Confidence 1123456679999987553 22 1 234 566677777788888888 99999999986532 34566788
Q ss_pred HHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhc--CCceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEEe
Q 003958 184 LGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIA 255 (784)
Q Consensus 184 l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi~ 255 (784)
+++.+++.|+.+... .... ... ...+.++.+ .++++|+. .+...+..+++++++.|+..|+-+-|.
T Consensus 144 f~~~l~~~g~~~~~~-~~~~-~~~---~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~vP~di~vi 211 (277)
T 3hs3_A 144 MTAEASKLKIDYLLE-ETPE-NNP---YISAQSALNKSNQFDAIIT-VNDLYAAEIIKEAKRRNLKIPDDFQLV 211 (277)
T ss_dssp HHHHHHHTTCEEEEE-ECCS-SCH---HHHHHHHHHTGGGCSEEEC-SSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHCCCCCCCC-CccC-Cch---HHHHHHHHcCCCCCCEEEE-CCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 999999999887654 3321 111 334444433 35666543 445567789999999998765544333
No 137
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=97.27 E-value=0.0066 Score=63.08 Aligned_cols=208 Identities=12% Similarity=0.041 Sum_probs=126.0
Q ss_pred CceEEEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCchh
Q 003958 29 PSVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAV 107 (784)
Q Consensus 29 ~~~i~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s~ 107 (784)
...-.||++.|.. ..+-.....+++-+.++ .|+.+. +.++..++..-.+....++.+++.+||-.....
T Consensus 60 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~ 129 (339)
T 3h5o_A 60 AKSRTVLVLIPSLANTVFLETLTGIETVLDA--------AGYQML--IGNSHYDAGQELQLLRAYLQHRPDGVLITGLSH 129 (339)
T ss_dssp ---CEEEEEESCSTTCTTHHHHHHHHHHHHH--------TTCEEE--EEECTTCHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHHHH--------CCCEEE--EEeCCCChHHHHHHHHHHHcCCCCEEEEeCCCC
Confidence 3456799999864 22334556677666666 256554 456667777766677777888888876422221
Q ss_pred hHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcC-CCcchhHHHHHH
Q 003958 108 TSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDD-DHGRNGIAALGD 186 (784)
Q Consensus 108 ~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~-~~g~~~~~~l~~ 186 (784)
.. .....+...++|+|....... + +.. ........-+..+++.|...|.++|++|.... .......+.+++
T Consensus 130 ~~-~~~~~l~~~~iPvV~~~~~~~---~---~~~-~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~ 201 (339)
T 3h5o_A 130 AE-PFERILSQHALPVVYMMDLAD---D---GRC-CVGFSQEDAGAAITRHLLSRGKRRIGFLGAQLDERVMKRLDGYRA 201 (339)
T ss_dssp CT-THHHHHHHTTCCEEEEESCCS---S---SCC-EEECCHHHHHHHHHHHHHHTTCCSEEEEEESCCHHHHHHHHHHHH
T ss_pred CH-HHHHHHhcCCCCEEEEeecCC---C---CCe-EEEECHHHHHHHHHHHHHHCCCCeEEEEeCCCCccHHHHHHHHHH
Confidence 11 334456678999998743211 1 122 55566777778888888888999999998764 233456788899
Q ss_pred HHhccCcEEEE-eeccCCCCChhHHHHHHHHhhc--CCceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEEe
Q 003958 187 TLAAKRCRISF-KAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIA 255 (784)
Q Consensus 187 ~l~~~gi~v~~-~~~~~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi~ 255 (784)
.+++.|+.... ........+...-...++++.+ ..+++|+. .+...+..+++++++.|+..|+-+-|.
T Consensus 202 al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~G~~vP~disvv 272 (339)
T 3h5o_A 202 ALDAADCRDAGLEWLDPQPSSMQMGADMLDRALAERPDCDALFC-CNDDLAIGALARSQQLGIAVPERLAIA 272 (339)
T ss_dssp HHHHTTCCCGGGEEEECSCCCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHCCCCCCChheEecCCCCHHHHHHHHHHHHcCCCCCcEEEE-CChHHHHHHHHHHHHcCCCCCCCEEEE
Confidence 99888862110 0111111222333344444432 35677654 445567889999999998766544333
No 138
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=97.26 E-value=0.02 Score=57.12 Aligned_cols=196 Identities=12% Similarity=0.104 Sum_probs=114.4
Q ss_pred EEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEc-cCchhhHH
Q 003958 33 NIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIG-PQDAVTSH 110 (784)
Q Consensus 33 ~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiG-p~~s~~~~ 110 (784)
+||++.|.. ..+-.....+++.+.++. |+++- +.++..++..-.+....++.+++.+||- +.......
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (271)
T 2dri_A 3 TIALVVSTLNNPFFVSLKDGAQKEADKL--------GYNLV--VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVG 72 (271)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEEE--EEECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHHc--------CcEEE--EeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 588888753 222234455666555552 45444 3455567666555666777778988764 33333222
Q ss_pred HHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHc--CCcEEEEEEEcCC--CcchhHHHHHH
Q 003958 111 VVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHY--GWREVIAIYVDDD--HGRNGIAALGD 186 (784)
Q Consensus 111 ~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~--~w~~v~ii~~d~~--~g~~~~~~l~~ 186 (784)
.....+...++|+|......+ +. +...........-+..++++|... +.++|++|..... ......+.+++
T Consensus 73 ~~~~~~~~~~iPvV~i~~~~~---~~--~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~I~~i~g~~~~~~~~~R~~Gf~~ 147 (271)
T 2dri_A 73 NAVKMANQANIPVITLDRQAT---KG--EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQ 147 (271)
T ss_dssp HHHHHHHHTTCCEEEESSCCS---SS--CCSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEecCCCC---CC--ceeEEEecChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHhHHHHHHHH
Confidence 233445667999998754321 11 111234455566667777877665 5689999985432 23456788999
Q ss_pred HHhccCcEEEEeeccCCCCChhHHHHHHHHhhc--CCceEEEEeccCCcHHHHHHHHHHcCC
Q 003958 187 TLAAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGM 246 (784)
Q Consensus 187 ~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~~~~a~~~g~ 246 (784)
.+++.|+.+.....-. .+...-...++++.+ ..+++|+. .+...+..+++++++.|+
T Consensus 148 al~~~g~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~g~ 206 (271)
T 2dri_A 148 AVAAHKFNVLASQPAD--FDRIKGLNVMQNLLTAHPDVQAVFA-QNDEMALGALRALQTAGK 206 (271)
T ss_dssp HHHHHTCEEEEEEECT--TCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHHTC
T ss_pred HHhcCCCEEEEecCCC--CCHHHHHHHHHHHHHhCCCccEEEE-CCCcHHHHHHHHHHHcCC
Confidence 9999898764322111 122333333444322 34666444 445567889999999886
No 139
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=97.24 E-value=0.011 Score=58.35 Aligned_cols=189 Identities=11% Similarity=0.016 Sum_probs=117.2
Q ss_pred EEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCchhhHHH
Q 003958 33 NIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVTSHV 111 (784)
Q Consensus 33 ~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s~~~~~ 111 (784)
+||++.|.. ..+-.....+++-+.++. |+++.+ .++..++..-.+....+..+++.+||-........
T Consensus 4 ~Igvi~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~- 72 (255)
T 1byk_A 4 VVAIIVTRLDSLSENLAVQTMLPAFYEQ--------GYDPIM--MESQFSPQLVAEHLGVLKRRNIDGVVLFGFTGITE- 72 (255)
T ss_dssp EEEEEESCTTCHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHHTTTCCEEEEECCTTCCT-
T ss_pred EEEEEeCCCCCccHHHHHHHHHHHHHHc--------CCEEEE--EeCCCcHHHHHHHHHHHHhcCCCEEEEecCccccH-
Confidence 689998853 222234556666665552 455444 45555666655566667777888876433221111
Q ss_pred HHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEc--C-CCcchhHHHHHHHH
Q 003958 112 VSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD--D-DHGRNGIAALGDTL 188 (784)
Q Consensus 112 va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d--~-~~g~~~~~~l~~~l 188 (784)
......++|+|...... +.+..+......-+..+++.|...|.++|+++... + .......+.+++.+
T Consensus 73 --~~l~~~~~pvV~~~~~~--------~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~al 142 (255)
T 1byk_A 73 --EMLAHWQSSLVLLARDA--------KGFASVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFC 142 (255)
T ss_dssp --TTSGGGSSSEEEESSCC--------SSCEEEEECHHHHHHHHHHHHHHTTCCCEEEECCCTTSTTTTHHHHHHHHHHH
T ss_pred --HHHHhcCCCEEEEcccc--------CCCCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCCCCcccHHHHHHHHHHHH
Confidence 23455689999875421 12334556666777888888888899999999854 2 34566788899999
Q ss_pred hccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHHHHcCC
Q 003958 189 AAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGM 246 (784)
Q Consensus 189 ~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a~~~g~ 246 (784)
++.|+.+.. +....+..+-...++++.+.++++|+. .+...+..+++++++.|+
T Consensus 143 ~~~g~~~~~---~~~~~~~~~~~~~~~~~l~~~~~ai~~-~~d~~A~g~~~al~~~g~ 196 (255)
T 1byk_A 143 KAHKLHPVA---ALPGLAMKQGYENVAKVITPETTALLC-ATDTLALGASKYLQEQRI 196 (255)
T ss_dssp HHTTCCCEE---ECCCSCHHHHHHHSGGGCCTTCCEEEE-SSHHHHHHHHHHHHHTTC
T ss_pred HHcCCCcce---eecCCccchHHHHHHHHhcCCCCEEEE-eChHHHHHHHHHHHHcCC
Confidence 998875432 121123333334455554456777654 444567889999999887
No 140
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=97.22 E-value=0.021 Score=58.54 Aligned_cols=206 Identities=11% Similarity=0.023 Sum_probs=113.8
Q ss_pred ceEEEEEEee---cCC-cchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCc
Q 003958 30 SVVNIGALLS---FST-NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQD 105 (784)
Q Consensus 30 ~~i~IG~i~~---~~~-~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~ 105 (784)
++.+||+++| .+. .+-.....+++.+.++. |+++.+. ++..+.. ..+....++++++.+||....
T Consensus 3 ~~~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~--------g~~~~~~--~~~~~~~-~~~~l~~l~~~~~dgIi~~~~ 71 (318)
T 2fqx_A 3 GDFVVGMVTDSGDIDDKSFNQQVWEGISRFAQEN--------NAKCKYV--TASTDAE-YVPSLSAFADENMGLVVACGS 71 (318)
T ss_dssp CCCEEEEEESSSCTTSSSHHHHHHHHHHHHHHHT--------TCEEEEE--ECCSGGG-HHHHHHHHHHTTCSEEEEEST
T ss_pred CCcEEEEEEcCCCCCCccHHHHHHHHHHHHHHHh--------CCeEEEE--eCCCHHH-HHHHHHHHHHcCCCEEEECCh
Confidence 4678999997 222 23334455666555552 4555443 3322222 234566677788888886432
Q ss_pred hhhHHHHHHhhhcC-CccEEecccCCCCCCcCCCCceEeecCChHHHHHHH----HHHHHHcCC-cEEEEEEEcC-CCcc
Q 003958 106 AVTSHVVSHVANEL-QVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAI----AEIVDHYGW-REVIAIYVDD-DHGR 178 (784)
Q Consensus 106 s~~~~~va~~~~~~-~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai----~~~l~~~~w-~~v~ii~~d~-~~g~ 178 (784)
.. ..++..++..+ ++|++......+ + .+++-.... +..++..+ +..|.+.|. ++|++|.... ....
T Consensus 72 ~~-~~~~~~~a~~~p~~p~v~id~~~~---~--~~~~~~v~~-d~~~~~~lag~~a~~l~~~Gh~r~Ig~i~g~~~~~~~ 144 (318)
T 2fqx_A 72 FL-VEAVIETSARFPKQKFLVIDAVVQ---D--RDNVVSAVF-GQNEGSFLVGVAAALKAKEAGKSAVGFIVGMELGMMP 144 (318)
T ss_dssp TT-HHHHHHHHHHCTTSCEEEESSCCC---S--CTTEEEEEE-CHHHHHHHHHHHHHHHHHHTTCCEEEEEESCCSTTTH
T ss_pred hH-HHHHHHHHHHCCCCEEEEEcCccC---C--CCCEEEEEe-chHHHHHHHHHHHHHHhccCCCcEEEEEeCcccHHHH
Confidence 22 12244445443 899987643211 0 123322333 34444444 466667777 8999998543 3345
Q ss_pred hhHHHHHHHHhccCcEEEEeeccCCC-CChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEEe
Q 003958 179 NGIAALGDTLAAKRCRISFKAPLSVE-ATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIA 255 (784)
Q Consensus 179 ~~~~~l~~~l~~~gi~v~~~~~~~~~-~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi~ 255 (784)
...+.+++.+++.|..+.....+... .+...-....+++.+.++++|+. .....+..++++++++|+. ++-+++.
T Consensus 145 ~r~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~-~~d~~a~Gv~~a~~e~g~~-P~dv~vi 220 (318)
T 2fqx_A 145 LFEAGFEAGVKAVDPDIQVVVEVANTFSDPQKGQALAAKLYDSGVNVIFQ-VAGGTGNGVIKEARDRRLN-GQDVWVI 220 (318)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEECSCSSCHHHHHHHHHHHHHTTCCEEEE-ECGGGHHHHHHHHHHHHHT-TCCCEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEccCccCHHHHHHHHHHHHHCCCcEEEE-CCCCCchHHHHHHHhhhhc-cCCcEEE
Confidence 66788888888877543322222211 12222334445554457887654 4445677889999998877 5545544
No 141
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=97.19 E-value=0.0098 Score=63.72 Aligned_cols=209 Identities=9% Similarity=0.055 Sum_probs=123.4
Q ss_pred CCCceEEEEEEeecCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCch
Q 003958 27 GRPSVVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDA 106 (784)
Q Consensus 27 ~~~~~i~IG~i~~~~~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s 106 (784)
......+||+++|.+..+-.....+++-+.++. |+.+.+...+... +....+..+++.+||-...
T Consensus 21 ~~~~s~~Igvv~~~~~~f~~~l~~gi~~~a~~~--------g~~~~i~~~~~~~------~~i~~l~~~~vDGiIi~~~- 85 (412)
T 4fe7_A 21 MFTKRHRITLLFNANKAYDRQVVEGVGEYLQAS--------QSEWDIFIEEDFR------ARIDKIKDWLGDGVIADFD- 85 (412)
T ss_dssp CCCCCEEEEEECCTTSHHHHHHHHHHHHHHHHH--------TCCEEEEECC-CC--------------CCCSEEEEETT-
T ss_pred CCCCCceEEEEeCCcchhhHHHHHHHHHHHHhc--------CCCeEEEecCCcc------chhhhHhcCCCCEEEEecC-
Confidence 445578899999865544445666777666663 4445544433221 1234455668888875322
Q ss_pred hhHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCCC----cchhHH
Q 003958 107 VTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDH----GRNGIA 182 (784)
Q Consensus 107 ~~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~----g~~~~~ 182 (784)
...+...+...++|+|..+...+... ..+.+-.+......-+..+++.|...|.++|++|...... .....+
T Consensus 86 --~~~~~~~l~~~~iPvV~i~~~~~~~~--~~~~~~~V~~D~~~~g~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~~R~~ 161 (412)
T 4fe7_A 86 --DKQIEQALADVDVPIVGVGGSYHLAE--SYPPVHYIATDNYALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREY 161 (412)
T ss_dssp --CHHHHHHHTTCCSCEEEEEECCSSGG--GSCSSEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSCCHHHHHHHH
T ss_pred --ChHHHHHHhhCCCCEEEecCCccccc--cCCCCCEEEeCHHHHHHHHHHHHHHcCCceEEEecccccccccHHHHHHH
Confidence 22344566778999998765432211 1233445566777778888899989999999999865443 456788
Q ss_pred HHHHHHhccCcEEEEeeccCC-CCChhHHHHHHHHh-hc-CCceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEEe
Q 003958 183 ALGDTLAAKRCRISFKAPLSV-EATEDEITDLLVKV-AL-TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIA 255 (784)
Q Consensus 183 ~l~~~l~~~gi~v~~~~~~~~-~~~~~d~~~~l~~l-~~-~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi~ 255 (784)
.+++.+++.|+.......... ..+..+....+.++ +. ..+++|+. .+...+..+++++++.|+..++-+-|.
T Consensus 162 Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~aI~~-~nD~~A~g~~~al~~~G~~vP~disvi 236 (412)
T 4fe7_A 162 AFRQLVAEEKYRGVVYQGLETAPENWQHAQNRLADWLQTLPPQTGIIA-VTDARARHILQVCEHLHIPVPEKLCVI 236 (412)
T ss_dssp HHHHHHTTSSSCCEEECCSCSSCSSHHHHHHHHHHHHHHSCTTEEEEE-SSHHHHHHHHHHHHHHTCCTTTTSEEE
T ss_pred HHHHHHHHcCCCccccccccccccchhhHHHHHHHHHHhCCCCeEEEE-EecHHHHHHHHHHHHcCCCCCceEEEE
Confidence 999999998875432221111 11222333334333 22 45676554 455667789999999998765544333
No 142
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=97.16 E-value=0.0035 Score=65.29 Aligned_cols=137 Identities=12% Similarity=0.130 Sum_probs=94.8
Q ss_pred HHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeEEee----cCccccceeccccccccEEEEEeccCCccc
Q 003958 504 INLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAII----TNRTKMADFTQPYIESGLVVVAPVRKLDSN 579 (784)
Q Consensus 504 ~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~~~t----~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~ 579 (784)
.+..|++ +++... +.|..++..+.+|++|+++++.... .++.....+..++...+..+++++.+
T Consensus 59 ~~~~g~~--v~~~~~------~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---- 126 (346)
T 3qsl_A 59 FKDEGLD--VSIADF------AGGSKALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAFALQGRAPMIGVGVSKKN---- 126 (346)
T ss_dssp HHHTTCE--EEEEEC------SSHHHHHHHHHTTSCSEEEEETHHHHHHHHTTCCEEEEEESBSSCCEEEEEETTT----
T ss_pred hHhhCCe--EEEEec------CChHHHHHHHHCCCCCEEccchHHHHHHHhCCCCeEEEEecccCCCcEEEEecCc----
Confidence 3566877 555443 5689999999999999998765443 45555666666665556666665442
Q ss_pred cccccccccHHHHHHHHHHHHHHHHHhhheecccCCCCCCCccCCceeehhhhhhhhhcccccccccchhhHHHHHHHHH
Q 003958 580 AWAFLSPFTPMMWGVTAIFFLAVGAVVWILEHRLNDEFRGPPKRQVVTIFWFSFSTMFFAHKEKTVSALGRLVLIIWLFV 659 (784)
Q Consensus 580 ~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~R~~~~~w~~~ 659 (784)
T Consensus 127 -------------------------------------------------------------------------------- 126 (346)
T 3qsl_A 127 -------------------------------------------------------------------------------- 126 (346)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhccccceeeEeeccccCCCCChHhhhhCCCceEEe-eCchHHHHHHh---hcccCc--cCceeCCCHHHHHHHH
Q 003958 660 VLIINSSYTASLTSILTVQKLSSPIKGIDSLRSSNYPIGYQ-VNSFARNYLVD---ELNIDE--SRLVPLNSPEEYAKAL 733 (784)
Q Consensus 660 ~lvl~~~Yta~L~s~l~~~~~~~~i~~~~dl~~~~~~i~~~-~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~l 733 (784)
..+|++++||. |++|++. .|+..+.+++. ..+... .+++.+....+.+.+|
T Consensus 127 ---------------------~~~i~s~~DL~--Gk~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al 183 (346)
T 3qsl_A 127 ---------------------LPGYKGPADLK--GRKIGVTAPGSSTNMVVNFFLAKHGLKASDVSFIGVGAGAGAVTAL 183 (346)
T ss_dssp ---------------------CTTCCSGGGGT--TCEEEESSTTSHHHHHHHHHHHHTTCCGGGSEEEECCSSHHHHHHH
T ss_pred ---------------------ccCCCChHHcC--CCEEEECCCCcHHHHHHHHHHHHcCCCHHHeEEEecCCcHHHHHHH
Confidence 23799999998 8899998 57654443322 233322 2445667778999999
Q ss_pred hcCCcCCCeeEEEechhhhHHHHcCC
Q 003958 734 KDGPHKGGVAAVVDDRAYAELFLSTR 759 (784)
Q Consensus 734 ~~~~~~~~~~a~~~~~~~~~~~~~~~ 759 (784)
++ |++||++...+.......+.
T Consensus 184 ~~----G~vDa~~~~~p~~~~~~~~g 205 (346)
T 3qsl_A 184 RS----GQIDAISNTDPVVSMLETSG 205 (346)
T ss_dssp HH----TSCSEEEEETTHHHHHHHTT
T ss_pred Hc----CCccEEEecchhHHHHHhCC
Confidence 99 89999999888876665554
No 143
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=97.13 E-value=0.048 Score=56.54 Aligned_cols=201 Identities=12% Similarity=0.002 Sum_probs=115.2
Q ss_pred CCCceEEEEEEeecC---CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEcc
Q 003958 27 GRPSVVNIGALLSFS---TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGP 103 (784)
Q Consensus 27 ~~~~~i~IG~i~~~~---~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp 103 (784)
..+++++||++++-. ..+-.....+++.+.++.+ -++++.+.++..+.....+....++++++.+||+.
T Consensus 22 ~~~~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G--------~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~~ 93 (356)
T 3s99_A 22 MAEEKLKVGFIYIGPPGDFGWTYQHDQARKELVEALG--------DKVETTFLENVAEGADAERSIKRIARAGNKLIFTT 93 (356)
T ss_dssp ----CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHT--------TTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEEC
T ss_pred ccCCCCEEEEEEccCCCchhHHHHHHHHHHHHHHHhC--------CceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEEC
Confidence 456789999999742 2333455666766666642 12566666666555555667788888899999986
Q ss_pred CchhhHHHHHHhhhcC-CccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHH-HH-cCCcEEEEEEEcC-CCcch
Q 003958 104 QDAVTSHVVSHVANEL-QVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV-DH-YGWREVIAIYVDD-DHGRN 179 (784)
Q Consensus 104 ~~s~~~~~va~~~~~~-~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l-~~-~~w~~v~ii~~d~-~~g~~ 179 (784)
... ...++..++..+ ++|++-..... . .|++..... +..++..++-.+ .+ -+-++|++|.... .....
T Consensus 94 g~~-~~~~~~~vA~~~Pdv~fv~id~~~---~---~~Nv~sv~~-~~~eg~ylaG~~A~~~tk~~kIGfVgg~~~p~v~~ 165 (356)
T 3s99_A 94 SFG-YMDPTVKVAKKFPDVKFEHATGYK---T---ADNMSAYNA-RFYEGRYVQGVIAAKMSKKGIAGYIGSVPVPEVVQ 165 (356)
T ss_dssp SGG-GHHHHHHHHTTCTTSEEEEESCCC---C---BTTEEEEEE-CHHHHHHHHHHHHHHHCSSCEEEEEECCCCHHHHH
T ss_pred CHH-HHHHHHHHHHHCCCCEEEEEeccc---c---CCcEEEEEe-chhHHHHHHHHHHHHhcCCCEEEEECCCccHHHHH
Confidence 533 344566666665 78887643221 1 133333222 234444444432 11 1257999998643 22334
Q ss_pred hHHHHHHHHhccCcEEEEeeccCCC-CChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHHHHcCC
Q 003958 180 GIAALGDTLAAKRCRISFKAPLSVE-ATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGM 246 (784)
Q Consensus 180 ~~~~l~~~l~~~gi~v~~~~~~~~~-~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a~~~g~ 246 (784)
+...+...++..+..+.....+... .+...-....+.+.+.++++|+-..... .++++|++.|.
T Consensus 166 ~~~GF~~G~k~~np~i~v~~~~~g~~~d~~kg~~~a~~l~~~G~DvIf~~~d~~---Gv~~aa~e~Gv 230 (356)
T 3s99_A 166 GINSFMLGAQSVNPDFRVKVIWVNSWFDPGKEADAAKALIDQGVDIITQHTDST---AAIQVAHDRGI 230 (356)
T ss_dssp HHHHHHHHHHTTCTTCEEEEEECSSSCCHHHHHHHHHHHHHTTCSEEEESSSSS---HHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCChHHHHHHHHHHHhCCCcEEEECCCch---HHHHHHHHcCC
Confidence 5677888887765443322223211 1333334555566667899887765543 68899998773
No 144
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=97.11 E-value=0.013 Score=60.65 Aligned_cols=196 Identities=11% Similarity=0.073 Sum_probs=121.1
Q ss_pred CceEEEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCchh
Q 003958 29 PSVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAV 107 (784)
Q Consensus 29 ~~~i~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s~ 107 (784)
...-+||++.|.. ..+-.....+++-+.++. |+.+.+. ++.. +....+....++.+++.+||-...
T Consensus 62 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~--~~~~-~~~~~~~~~~l~~~~vdGiIi~~~-- 128 (333)
T 3jvd_A 62 HRSALVGVIVPDLSNEYYSESLQTIQQDLKAA--------GYQMLVA--EANS-VQAQDVVMESLISIQAAGIIHVPV-- 128 (333)
T ss_dssp --CCEEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEEEEE--ECCS-HHHHHHHHHHHHHHTCSEEEECCC--
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHC--------CCEEEEE--CCCC-hHHHHHHHHHHHhCCCCEEEEcch--
Confidence 3456799999864 233335556666666653 5555544 4444 555555566677778998875443
Q ss_pred hHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCC--CcchhHHHHH
Q 003958 108 TSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIAALG 185 (784)
Q Consensus 108 ~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~ 185 (784)
...+...++|+|..+...+. +.+..+......-+..+++.|...|.++|++|..... ......+.++
T Consensus 129 -----~~~~~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 197 (333)
T 3jvd_A 129 -----VGSIAPEGIPMVQLTRGELG------PGFPRVLCDDEAGFFQLTESVLGGSGMNIAALVGEESLSTTQERMRGIS 197 (333)
T ss_dssp -----TTCCC-CCSCEEEECC----------CCSCEEEECHHHHHHHHHHHHCCSSSCEEEEEESCTTSHHHHHHHHHHH
T ss_pred -----HHHHhhCCCCEEEECccCCC------CCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHH
Confidence 34566789999987553321 1223345566677788888898889999999996543 3456688999
Q ss_pred HHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcC-CceEEEEeccCCcHHHHHHHHHHcCCCCCCeE
Q 003958 186 DTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT-ESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYV 252 (784)
Q Consensus 186 ~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~-~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~ 252 (784)
+.+++.|+.... ... ..+..+-...+.++.+. .+++|+. .+...+..+++++++.|+..|+-+
T Consensus 198 ~al~~~g~~~~~--~~~-~~~~~~~~~~~~~ll~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~di 261 (333)
T 3jvd_A 198 HAASIYGAEVTF--HFG-HYSVESGEEMAQVVFNNGLPDALIV-ASPRLMAGVMRAFTRLNVRVPHDV 261 (333)
T ss_dssp HHHHHTTCEEEE--EEC-CSSHHHHHHHHHHHHHTCCCSEEEE-CCHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHHCCCCEEE--ecC-CCCHHHHHHHHHHHhcCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCce
Confidence 999999987221 111 12333334444444332 3676654 445567789999999998765433
No 145
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=97.10 E-value=0.026 Score=58.74 Aligned_cols=205 Identities=12% Similarity=0.023 Sum_probs=115.3
Q ss_pred CceEEEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCC-CHHHHHHHHHHHHhcCceEEEc--cC
Q 003958 29 PSVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNH-SGFLALAEALHLMEGQTVAIIG--PQ 104 (784)
Q Consensus 29 ~~~i~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~-~~~~a~~~~~~li~~~v~aiiG--p~ 104 (784)
....+||++.|.- ..+-.....+++-+.++ .|+++.+. ++.. ++..-.+....++.+++.+||- +.
T Consensus 59 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~--~~~~~~~~~~~~~l~~l~~~~vdGiIi~~~~ 128 (349)
T 1jye_A 59 KQSLLIGVATSSLALHAPSQIVAAILSRADQ--------LGASVVVS--MVERSGVEACKTAVHNLLAQRVSGLIINYPL 128 (349)
T ss_dssp ---CEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEEE--ECCSSSHHHHHHHHHHHHTTTCSCEEEESCC
T ss_pred CCCCEEEEEeCCCCcccHHHHHHHHHHHHHH--------cCCEEEEE--eCCCCcHHHHHHHHHHHHHCCCCEEEEecCC
Confidence 3456899998853 22222344555555544 25665553 3333 3444444556677777877663 43
Q ss_pred chhhHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCC--CcchhHH
Q 003958 105 DAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD--HGRNGIA 182 (784)
Q Consensus 105 ~s~~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~ 182 (784)
.... .+...+...++|+|...... +...+ ........-+..+++.|...|.++|++|..... ......+
T Consensus 129 ~~~~--~~~~~~~~~~iPvV~i~~~~----~~~~~---~V~~d~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~ 199 (349)
T 1jye_A 129 DDQD--AIAVEAACTNVPALFLDVSD----QTPIN---SIIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLA 199 (349)
T ss_dssp CHHH--HHHHHHHTTTSCEEESSSCT----TSSSC---EEEECHHHHHHHHHHHHHHHTCCSEEEEECCTTSHHHHHHHH
T ss_pred CChh--HHHHHHhhCCCCEEEEcccC----CCCCC---EEEEchHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHH
Confidence 3322 22233455789999875321 11222 334455566667778887789999999986533 2345678
Q ss_pred HHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhc--CCceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEEe
Q 003958 183 ALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIA 255 (784)
Q Consensus 183 ~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi~ 255 (784)
.+++.+++.|+.+.....-. .+..+-...+.++.+ ..+++|+. .+...+..+++++++.|+..|+-+-|.
T Consensus 200 Gf~~al~~~gi~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~G~~vP~disvv 271 (349)
T 1jye_A 200 GWHKYLTRNQIQPIAEREGD--WSAMSGFQQTMQMLNEGIVPTAMLV-ANDQMALGAMRAITESGLRVGADISVV 271 (349)
T ss_dssp HHHHHHHHTTCCCSEEEECC--SSHHHHHHHHHHHHHTTCCCSEEEE-SSHHHHHHHHHHHHHTTCCBTTTBEEE
T ss_pred HHHHHHHHcCCCccccccCC--CChHHHHHHHHHHHhCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 89999999887543221111 122222233333322 34676654 344567789999999998765544443
No 146
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=97.10 E-value=0.0066 Score=61.98 Aligned_cols=200 Identities=12% Similarity=0.102 Sum_probs=121.0
Q ss_pred CceEEEEEEeecC------CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEc
Q 003958 29 PSVVNIGALLSFS------TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIG 102 (784)
Q Consensus 29 ~~~i~IG~i~~~~------~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiG 102 (784)
...-+||++.|.+ ..+-.....+++-+.++. |+++. +.++..+.....+....+..+++.+||-
T Consensus 20 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi 89 (305)
T 3huu_A 20 NKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVR--------GYSTR--MTVSENSGDLYHEVKTMIQSKSVDGFIL 89 (305)
T ss_dssp -CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHH--------TCEEE--ECCCSSHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHhCCCCEEEE
Confidence 4467899999972 222234455666555552 45444 4555555555555555666778988764
Q ss_pred cCchhhHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCCC--cchh
Q 003958 103 PQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDH--GRNG 180 (784)
Q Consensus 103 p~~s~~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~--g~~~ 180 (784)
....... .....+...++|+|..+... .. +.+..+......-+..+++.|...|.++|++|...... ....
T Consensus 90 ~~~~~~~-~~~~~l~~~~iPvV~i~~~~---~~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R 162 (305)
T 3huu_A 90 LYSLKDD-PIEHLLNEFKVPYLIVGKSL---NY---ENIIHIDNDNIDAAYQLTQYLYHLGHRHILFLQESGHYAVTEDR 162 (305)
T ss_dssp SSCBTTC-HHHHHHHHTTCCEEEESCCC---SS---TTCCEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCBHHHHHH
T ss_pred eCCcCCc-HHHHHHHHcCCCEEEECCCC---cc---cCCcEEEeCHHHHHHHHHHHHHHCCCCeEEEEcCCcccchhHHH
Confidence 3222221 33455667899999875432 11 22334556667777888899988899999999875443 3456
Q ss_pred HHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHh-hc--CCceEEEEeccCCcHHHHHHHHHHcCCCCCC
Q 003958 181 IAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKV-AL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGTG 250 (784)
Q Consensus 181 ~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l-~~--~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~ 250 (784)
.+.+++.+++.|+.+.. .+. .+...-...+.++ .+ ..+++|+. .+...+..+++++++.|+..++
T Consensus 163 ~~Gf~~~l~~~g~~~~~--~~~--~~~~~~~~~~~~~~l~~~~~~~ai~~-~nd~~A~g~~~al~~~g~~vP~ 230 (305)
T 3huu_A 163 SVGFKQYCDDVKISNDC--VVI--KSMNDLRDFIKQYCIDASHMPSVIIT-SDVMLNMQLLNVLYEYQLRIPE 230 (305)
T ss_dssp HHHHHHHHHHTTCCCCE--EEE--CSHHHHHHHC--------CCCSEEEE-SSHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHHHHHHHcCCCccc--EEe--cCcHHHHHHHHHhhhcCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCc
Confidence 78899999999876543 111 1111123334444 22 35666554 4555677899999999987654
No 147
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=97.07 E-value=0.048 Score=54.92 Aligned_cols=209 Identities=12% Similarity=-0.006 Sum_probs=118.1
Q ss_pred EEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEec--CCCCHHHHHHHHHHHHhcCceEEEc-cCchhh
Q 003958 33 NIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQD--CNHSGFLALAEALHLMEGQTVAIIG-PQDAVT 108 (784)
Q Consensus 33 ~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D--~~~~~~~a~~~~~~li~~~v~aiiG-p~~s~~ 108 (784)
+||++.|.. ..+-.....+++.+.++. |+++.+ .+ +..++..-.+....++.+++.+||- +.....
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~ 72 (288)
T 1gud_A 3 EYAVVLKTLSNPFWVDMKKGIEDEAKTL--------GVSVDI--FASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVN 72 (288)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCCEEE--EECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSSST
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHHc--------CCEEEE--eCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHH
Confidence 689988753 222234455666555553 344443 44 5567666566666777888988764 333322
Q ss_pred HHHHHHhhhcCCccEEecccCCCCCC-c-CCCCceEeecCChHHHHHHHHHHHHHc-C--CcEEEEEEEcCCC--cchhH
Q 003958 109 SHVVSHVANELQVPLLSFSATDPTLS-S-LQFPYFVRTTQSDQYQMAAIAEIVDHY-G--WREVIAIYVDDDH--GRNGI 181 (784)
Q Consensus 109 ~~~va~~~~~~~ip~Is~~a~~~~l~-~-~~~p~~~r~~ps~~~~~~ai~~~l~~~-~--w~~v~ii~~d~~~--g~~~~ 181 (784)
.......+...++|+|......+... . ..-+..-.+......-+..++++|... | .++|++|...... .....
T Consensus 73 ~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~~~I~~i~g~~~~~~~~~R~ 152 (288)
T 1gud_A 73 LVMPVARAWKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARR 152 (288)
T ss_dssp THHHHHHHHHTTCEEEEESSCCCHHHHHHTTCCCSEEEECCHHHHHHHHHHHHHHHHGGGCEEEEEEECSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCeEEEECCCCCcccccccCCceeEEECCChHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCCchHhHHH
Confidence 12223344568999998754221100 0 000110234556666677778887665 8 8999999865332 24567
Q ss_pred HHHHHHHhcc-CcEEEEeeccCCCCChhHHHHHHHHhhc--CCceEEEEeccCCcHHHHHHHHHHcCCCCCCeEEEe
Q 003958 182 AALGDTLAAK-RCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYVWIA 255 (784)
Q Consensus 182 ~~l~~~l~~~-gi~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~wi~ 255 (784)
+.+++.+++. |+.+.....-. .+...-...++++.+ ..+++|+. .+...+..+++++++.|+. .+...++
T Consensus 153 ~Gf~~al~~~~g~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~G~~-~dv~vvG 225 (288)
T 1gud_A 153 NGATEAFKKASQIKLVASQPAD--WDRIKALDVATNVLQRNPNIKAIYC-ANDTMAMGVAQAVANAGKT-GKVLVVG 225 (288)
T ss_dssp HHHHHHHHTCTTEEEEEEEECT--TCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHTTCT-TTSEEEE
T ss_pred HHHHHHHHhCCCcEEEEeecCC--ccHHHHHHHHHHHHHhCCCceEEEE-CCCchHHHHHHHHHhcCCC-CCeEEEE
Confidence 8899999887 87654322111 223333334444332 34666554 4445678899999999874 3333343
No 148
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=97.03 E-value=0.12 Score=52.17 Aligned_cols=194 Identities=13% Similarity=0.079 Sum_probs=108.3
Q ss_pred ceEEEEEEeec--CC-cchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCch
Q 003958 30 SVVNIGALLSF--ST-NVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDA 106 (784)
Q Consensus 30 ~~i~IG~i~~~--~~-~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s 106 (784)
.+.+||+++|- +. .+-.....+++.+.++. |+++. +.++..+.....+....++++++.+||.....
T Consensus 4 ~~~~Ig~v~~~~~~d~~f~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~l~~l~~~~vdgIi~~~~~ 73 (296)
T 2hqb_A 4 GGGMVGLLVEDTIDDQGWNRKAYEGLLNIHSNL--------DVDVV--LEEGVNSEQKAHRRIKELVDGGVNLIFGHGHA 73 (296)
T ss_dssp --CEEEEECCCC----CCTHHHHHHHHHHHHHS--------CCEEE--EECCCCSHHHHHHHHHHHHHTTCCEEEECSTH
T ss_pred CCcEEEEEECCCCCCCcHHHHHHHHHHHHHHHh--------CCeEE--EEeCCCCHHHHHHHHHHHHHCCCCEEEEcCHh
Confidence 35789999973 22 33345556666666552 45543 34444454444455667778899999975433
Q ss_pred hhHHHHHHhhhcC-CccEEecccCCCCCCcCCCCceEeecCChHHHHHHHH-HHHHHc-CCcEEEEEEEcCCCcchhHHH
Q 003958 107 VTSHVVSHVANEL-QVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIA-EIVDHY-GWREVIAIYVDDDHGRNGIAA 183 (784)
Q Consensus 107 ~~~~~va~~~~~~-~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~-~~l~~~-~w~~v~ii~~d~~~g~~~~~~ 183 (784)
. ...+..++..+ ++|++...... .. +.+-..... ..++..++ .++.++ +-++|++|...... . ..+.
T Consensus 74 ~-~~~~~~~~~~~p~~p~v~id~~~---~~---~~~~~v~~d-~~~g~~lag~la~~l~~~~~Ig~i~g~~~~-~-r~~G 143 (296)
T 2hqb_A 74 F-AEYFSTIHNQYPDVHFVSFNGEV---KG---ENITSLHFE-GYAMGYFGGMVAASMSETHKVGVIAAFPWQ-P-EVEG 143 (296)
T ss_dssp H-HHHHHTTTTSCTTSEEEEESCCC---CS---SSEEEEEEC-CHHHHHHHHHHHHHTCSSSEEEEEESCTTC-H-HHHH
T ss_pred H-HHHHHHHHHHCCCCEEEEEecCc---CC---CCEEEEEec-hHHHHHHHHHHHHhhccCCeEEEEcCcCch-h-hHHH
Confidence 2 23355555544 78888764321 11 233223333 33333333 334342 56899999864332 2 7788
Q ss_pred HHHHHhccCcEEEEeeccCCC-CChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHHHHcC
Q 003958 184 LGDTLAAKRCRISFKAPLSVE-ATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLG 245 (784)
Q Consensus 184 l~~~l~~~gi~v~~~~~~~~~-~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a~~~g 245 (784)
+++.+++.|.. .....+... .+...-....+++.+.++++|+ +.....+..+++++++.|
T Consensus 144 f~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~-~~~D~~a~Gv~~a~~e~G 204 (296)
T 2hqb_A 144 FVDGAKYMNES-EAFVRYVGEWTDADKALELFQELQKEQVDVFY-PAGDGYHVPVVEAIKDQG 204 (296)
T ss_dssp HHHHHHHTTCC-EEEEEECSSSSCHHHHHHHHHHHHTTTCCEEE-CCCTTTHHHHHHHHHHHT
T ss_pred HHHHHHHhCCC-eEEEEeeccccCHHHHHHHHHHHHHCCCcEEE-ECCCCCCHHHHHHHHHcC
Confidence 99999888764 322222211 1222233445555555788655 455566788999999987
No 149
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=97.02 E-value=0.00045 Score=57.51 Aligned_cols=79 Identities=15% Similarity=0.076 Sum_probs=62.4
Q ss_pred HHHHHHHHHhhheecccCCCCCCCccCCceeehhhhhhhhhccc--ccccccchhhHHHHHHHHHHHHHHhhccccceee
Q 003958 597 IFFLAVGAVVWILEHRLNDEFRGPPKRQVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSI 674 (784)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~ 674 (784)
+.+++.+++++.+++..+ +....++.+++|+++.++..-| +-.|++..+|+++++|.++++.+.+...+.+++.
T Consensus 17 ~~~~~~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~ 92 (103)
T 2k1e_A 17 KVLEEASKKAVEAERGAP----GAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATD 92 (103)
T ss_dssp HHHHHHHHHHHHHHTTST----TCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTT
T ss_pred HHHHHHHHhhhhhccCCC----CcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455677777776543 2233478999999999998665 5589999999999999999999999999999988
Q ss_pred Eeecc
Q 003958 675 LTVQK 679 (784)
Q Consensus 675 l~~~~ 679 (784)
++...
T Consensus 93 ~~~~~ 97 (103)
T 2k1e_A 93 FVRRE 97 (103)
T ss_dssp GGGHH
T ss_pred HHHHH
Confidence 86543
No 150
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=96.98 E-value=0.0017 Score=66.25 Aligned_cols=204 Identities=10% Similarity=0.044 Sum_probs=125.1
Q ss_pred CceEEEEEEeecC--CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCch
Q 003958 29 PSVVNIGALLSFS--TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDA 106 (784)
Q Consensus 29 ~~~i~IG~i~~~~--~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s 106 (784)
...-+||++.|.. ..+......+++-+.++. |+++. +.++..++....+....++.+++.+||-....
T Consensus 11 ~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~ 80 (301)
T 3miz_A 11 SRSNTFGIITDYVSTTPYSVDIVRGIQDWANAN--------GKTIL--IANTGGSSEREVEIWKMFQSHRIDGVLYVTMY 80 (301)
T ss_dssp -CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEEEEEE
T ss_pred CCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHhCCCCEEEEecCC
Confidence 4467899999874 233225667777777662 55554 45566677766666777777888887643222
Q ss_pred hhHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCCC--cchhHHHH
Q 003958 107 VTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDH--GRNGIAAL 184 (784)
Q Consensus 107 ~~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~--g~~~~~~l 184 (784)
... ....+...++|+|..+...+.. +.+..+......-+..+++.|...|.++|++|...... .....+.+
T Consensus 81 ~~~--~~~~~~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 153 (301)
T 3miz_A 81 RRI--VDPESGDVSIPTVMINCRPQTR-----ELLPSIEPDDYQGARDLTRYLLERGHRRIGYIRLNPILLGAELRLDAF 153 (301)
T ss_dssp EEE--CCCCCTTCCCCEEEEEEECSST-----TSSCEEEECHHHHHHHHHHHHHTTTCCSEEEEECCTTSHHHHHHHHHH
T ss_pred ccH--HHHHHHhCCCCEEEECCCCCCC-----CCCCEEeeChHHHHHHHHHHHHHcCCCeEEEEecCccchhHHHHHHHH
Confidence 211 3355667899999876543211 02234456667778888899988999999999965433 34567889
Q ss_pred HHHHhccCcEEE----Eee---ccCCCCChhHHHHHHHHhhc--CCceEEEEeccCCcHHHHHHHHHHcCCCCCCeE
Q 003958 185 GDTLAAKRCRIS----FKA---PLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYLGMLGTGYV 252 (784)
Q Consensus 185 ~~~l~~~gi~v~----~~~---~~~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~~~~a~~~g~~~~~~~ 252 (784)
++.+++.|+.+. ... .+...... ....+.++.+ ..+++|+. .+...+..+++++++.|+..++-+
T Consensus 154 ~~al~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~vP~di 227 (301)
T 3miz_A 154 RRTTSEFGLTENDLSISLGMDGPVGAENNY--VFAAATEMLKQDDRPTAIMS-GNDEMAIQIYIAAMALGLRIPQDV 227 (301)
T ss_dssp HHHHHHHTCCGGGEEEEECEESSTTSCEEC--HHHHHHHHHTSTTCCSEEEE-SSHHHHHHHHHHHHTTTCCHHHHC
T ss_pred HHHHHHcCCCCCcceEEEcCCCCcCccccH--HHHHHHHHHcCCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCCe
Confidence 999988886532 111 12211111 0123333322 35676654 444567789999999998755433
No 151
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=96.96 E-value=0.0041 Score=63.64 Aligned_cols=70 Identities=21% Similarity=0.298 Sum_probs=49.9
Q ss_pred CCCChHhhhhCCCceEEeeCchHHHHHHh---hcccCccCce-eCCCHHHHHHHHhcCCcCCCeeEEEechhhhHHHHcC
Q 003958 683 PIKGIDSLRSSNYPIGYQVNSFARNYLVD---ELNIDESRLV-PLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLST 758 (784)
Q Consensus 683 ~i~~~~dl~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~ 758 (784)
+|.+++||. |++|++..++..+.++.. ..+.....+. .+.+..+.+.+|.+ |++||++...+.+.+...+
T Consensus 96 ~i~s~~dL~--Gk~i~~~~gs~~~~~l~~~l~~~Gl~~~~v~~~~~~~~~~~~al~~----G~vDa~~~~~~~~~~~~~~ 169 (308)
T 2x26_A 96 PIKTVADLK--GHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQ----GNVDAWAIWDPYYSAALLQ 169 (308)
T ss_dssp SCCSGGGGT--TSEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHT----TSSSEEEEETTHHHHHHHH
T ss_pred CCCCHHHcC--CCEEeeeCCCcHHHHHHHHHHHcCCCHHHeEEEecChHHHHHHHHc----CCCCEEEecchhHHHHHhc
Confidence 689999999 889999877765554432 2333322232 34567889999999 8999999888888776544
No 152
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=96.96 E-value=0.0023 Score=65.34 Aligned_cols=78 Identities=8% Similarity=0.000 Sum_probs=51.8
Q ss_pred CcceeeeeHHHHHHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEee-EEeec---Cccccceecccccc
Q 003958 489 SEMTSGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGD-IAIIT---NRTKMADFTQPYIE 564 (784)
Q Consensus 489 ~~~~~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~-~~~t~---~r~~~~~fs~p~~~ 564 (784)
+..+.|+.+.+-+-+.++.|++ ++++.. +....++..|..|++|+++++ ..... +....+.+..++..
T Consensus 14 ~~~~~~~~va~~~g~~~~~Gl~--v~~~~~------~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 85 (302)
T 3ix1_A 14 NAVHTFLYVAIENGYFAEEGLD--VDIVFP------TNPTDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVASVVRS 85 (302)
T ss_dssp CGGGHHHHHHHHTTHHHHTTEE--EEEECC------SSTTHHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEEEEEECS
T ss_pred CcccHHHHHHHHcChHHHcCCc--EEEecC------CCCchHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEEEEEecc
Confidence 3446788888888888888987 555543 334588999999999999876 22222 23334555555555
Q ss_pred ccEEEEEecc
Q 003958 565 SGLVVVAPVR 574 (784)
Q Consensus 565 ~~~~~~~~~~ 574 (784)
.+..+++++.
T Consensus 86 ~~~~l~~~~~ 95 (302)
T 3ix1_A 86 PLNHVMFLAE 95 (302)
T ss_dssp CCEEEEEEGG
T ss_pred CCEEEEEECC
Confidence 5666666554
No 153
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=96.89 E-value=0.013 Score=60.38 Aligned_cols=70 Identities=21% Similarity=0.230 Sum_probs=49.8
Q ss_pred CCCCChHhhhhCCCceEEeeCchHHHHHHh---hcccCccC--ceeCCCHHHHHHHHhcCCcCCCeeEEEechhhhHHHH
Q 003958 682 SPIKGIDSLRSSNYPIGYQVNSFARNYLVD---ELNIDESR--LVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFL 756 (784)
Q Consensus 682 ~~i~~~~dl~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~ 756 (784)
.+|++++||+ |++|++..++....++.. ..+.+... ++.. +..+.+.+|++ |++||++...++.....
T Consensus 121 s~I~s~~DLk--Gk~i~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~----G~vDa~~~~~p~~~~~~ 193 (324)
T 3ksx_A 121 SALRTVADLK--GKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYL-SPANARAAFAA----GQVDAWAIWDPWYSALT 193 (324)
T ss_dssp CSCCSGGGGT--TCEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEEC-CHHHHHHHHHT----TCCSEEEEETTHHHHHH
T ss_pred CCCCCHHHhC--CCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEeC-CHHHHHHHHHc----CCCCEEEEccHHHHHHH
Confidence 4799999999 999999987755444432 22333222 2223 67899999999 89999988888877765
Q ss_pred cC
Q 003958 757 ST 758 (784)
Q Consensus 757 ~~ 758 (784)
.+
T Consensus 194 ~~ 195 (324)
T 3ksx_A 194 LD 195 (324)
T ss_dssp HT
T ss_pred hc
Confidence 54
No 154
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=96.59 E-value=0.0026 Score=66.30 Aligned_cols=71 Identities=15% Similarity=0.219 Sum_probs=48.6
Q ss_pred CCCCChHhh-hhCCCceEEeeCchHHHHHH----hhcccCcc--CceeCCCHHHHHHHHhcCCcCCCeeEEEechhhhHH
Q 003958 682 SPIKGIDSL-RSSNYPIGYQVNSFARNYLV----DELNIDES--RLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAEL 754 (784)
Q Consensus 682 ~~i~~~~dl-~~~~~~i~~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~ 754 (784)
.+|++++|| + |++||+..+++...++. +..+.+.. +++.+ +..+.+.+|++ |++||++...++...
T Consensus 143 s~I~s~~DL~k--Gk~i~v~~~~s~~~~~~~~~l~~~Gl~~~dv~~~~~-~~~~~~~al~~----G~vDa~~~~~p~~~~ 215 (341)
T 3un6_A 143 MHLNEFNNNGD--DYHFGIPHRYSTHYLLLEELRKQLKIKPGHFSYHEM-SPAEMPAALSE----HRITGYSVAEPFGAL 215 (341)
T ss_dssp CCGGGCCSSSS--CEEEEESCSSSHHHHHHHHHHHHTTCCTTSEEEEEC-CGGGHHHHHHT----TSCSEEEEETTHHHH
T ss_pred CCCCCHHHhCC--CCEEEECCCCCHHHHHHHHHHHHcCCCHHHeEEEEc-ChHHHHHHHHc----CCCCEEEecCCHHHH
Confidence 378999999 7 88999987544333221 22333322 33334 56788999999 899999998888877
Q ss_pred HHcCC
Q 003958 755 FLSTR 759 (784)
Q Consensus 755 ~~~~~ 759 (784)
...+.
T Consensus 216 ~~~~~ 220 (341)
T 3un6_A 216 GEKLG 220 (341)
T ss_dssp HHHSS
T ss_pred HHhcC
Confidence 66554
No 155
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=96.44 E-value=0.0011 Score=56.91 Aligned_cols=77 Identities=18% Similarity=0.202 Sum_probs=60.4
Q ss_pred HHHHHHHhhheecccCCCCCCCccCCceeehhhhhhhhhccc--ccccccchhhHHHHHHHHHHHHHHhhccccceeeEe
Q 003958 599 FLAVGAVVWILEHRLNDEFRGPPKRQVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILT 676 (784)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~ 676 (784)
+++.+.+++.+|+..+ +....++.+++|+++.++..-| +-.|.+..+|++.+.|.++++.+.+...+.+++.+.
T Consensus 40 ~~~~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~ 115 (122)
T 2ih3_C 40 LLAGSYLAVLAERGAP----GAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFV 115 (122)
T ss_dssp HHHHHHHHHHHHTTST----TCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhheeeecCC----CCccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777776432 2334578999999999998554 558999999999999999999999999999998886
Q ss_pred ecc
Q 003958 677 VQK 679 (784)
Q Consensus 677 ~~~ 679 (784)
...
T Consensus 116 ~~~ 118 (122)
T 2ih3_C 116 GRE 118 (122)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 156
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=96.19 E-value=0.13 Score=52.74 Aligned_cols=217 Identities=13% Similarity=0.068 Sum_probs=124.0
Q ss_pred CceEEEEEEeecCCcchhhHHHHHHHHHHHHhcCCCCC---C--CCEEEEEEecCCCCH-----HHHHHHHHHHHhc-Cc
Q 003958 29 PSVVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTL---G--GTKLKLQMQDCNHSG-----FLALAEALHLMEG-QT 97 (784)
Q Consensus 29 ~~~i~IG~i~~~~~~~g~~~~~a~~~Ave~IN~~~~il---~--g~~l~~~~~D~~~~~-----~~a~~~~~~li~~-~v 97 (784)
..+++||++.+-.+. .....++++..+++-|..+... . ...+++++..+-.++ ..+++...++..+ ++
T Consensus 10 ~~~~~igi~t~t~s~-se~t~~~a~~~i~~yg~~pn~~~l~~~~s~~iG~I~~~~~pd~F~se~~ttI~~I~~~a~~~gy 88 (371)
T 3qi7_A 10 IDDFKVAVVTQPLSE-NKVQYNMVEEMAKEYEEENKIDKDKDGQTKVKQTIKHVVLPENFTSNIDSAINKIVKLADDKEV 88 (371)
T ss_dssp CCCEEEEEEECCTTT-CHHHHHHHHHHHHHHHHHTTCCC-----CCCCEEEEEEECCTTGGGGHHHHHHHHHGGGGCTTE
T ss_pred CCCeEEEEEcCCcCC-CHHHHHHHHHHHHHhCCCcccchhcccccccceEEEEeccCCCchHHHHHHHHHHHHHhhcCCC
Confidence 347999998775432 3567788898999988744321 0 123455555533333 3445556666555 77
Q ss_pred eEEEccCchhhHHHHHHhhhcCCccEEecccCCCCCCc--CCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCC
Q 003958 98 VAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSS--LQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD 175 (784)
Q Consensus 98 ~aiiGp~~s~~~~~va~~~~~~~ip~Is~~a~~~~l~~--~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~ 175 (784)
.+||.-..........+.+...+++.|-..+....-.. ..+.. +.+......-+..+++.|.+.|.++|++|.....
T Consensus 89 k~II~n~~~~~~~~~i~~lkekrvDgIIi~~~~~ed~~~i~~~~d-i~V~~Dn~~Ggy~A~~~Li~~Ghk~Ia~Isgp~~ 167 (371)
T 3qi7_A 89 QAIVVSTDQAGLLPALQKVKEKRPEIITISAPMGDDKNQLSQFVD-VNLGVSAEERGKVLAERSKEMGAKAFIHYASTDD 167 (371)
T ss_dssp EEEEEECSSCCCHHHHHHHHHHCTTSEEEESSCCSCHHHHHHHSS-EEEECCHHHHHHHHHHHHHHTTCSCEEEEEETTG
T ss_pred eEEEEECCCcchHHHHHHHHhcCCCEEEEeccccccchhhcccCc-eEEEeChHHHHHHHHHHHHHCCCCEEEEEecccc
Confidence 77775433322233345566556555543332211100 00111 2344445555666779999999999999997542
Q ss_pred --C--cchhHHHHHHHHhccCcEEEEeeccCCCCChhH---HHHHHHH-----hhc-CCceEEEEeccCCcHHHHHHHHH
Q 003958 176 --H--GRNGIAALGDTLAAKRCRISFKAPLSVEATEDE---ITDLLVK-----VAL-TESRIIVVHTHYNRGPVVFHVAQ 242 (784)
Q Consensus 176 --~--g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d---~~~~l~~-----l~~-~~~~vIvl~~~~~~~~~~~~~a~ 242 (784)
+ .....+.+++++++.|+.+.....-.+. .... ...++.+ +++ ...+. |++++...+..+++++.
T Consensus 168 ~~~~~~~~R~~Gyk~Al~e~Gi~~~~~~~~d~t-~e~G~~~a~~lL~~~~~~~~~~~~~~TA-IFatND~mAiG~ikal~ 245 (371)
T 3qi7_A 168 LKDVNIAKRLEMIKETCKNIGLPFVQVNTPNIN-TEEDKNKVKQFLNEDIEKQVKKYGKDIN-VFGVNEYMDEVILTKAL 245 (371)
T ss_dssp GGSHHHHHHHHHHHHHHHHTTCCEEEEEECCCS-STHHHHHHHHHHHHHHHHHHHHHCSCCE-EEESSHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHcCCCceeecCCCCc-hHHHHHHHHHHHhccccchhhccCCCcE-EEECCHHHHHHHHHHHH
Confidence 2 3346788999999999977654322211 1112 2222221 112 23344 44566677889999999
Q ss_pred HcCCCCC
Q 003958 243 YLGMLGT 249 (784)
Q Consensus 243 ~~g~~~~ 249 (784)
+.|+..|
T Consensus 246 e~Gi~VP 252 (371)
T 3qi7_A 246 ELKYIVA 252 (371)
T ss_dssp HHCCBBC
T ss_pred HcCCccC
Confidence 9997654
No 157
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=96.18 E-value=0.016 Score=59.78 Aligned_cols=62 Identities=21% Similarity=0.198 Sum_probs=43.1
Q ss_pred CCCCChHhhhhCCCceEEe-eCchHHHHHH---hhcccCccC--ceeCCCHHHHHHHHhcCCcCCCeeEEEech
Q 003958 682 SPIKGIDSLRSSNYPIGYQ-VNSFARNYLV---DELNIDESR--LVPLNSPEEYAKALKDGPHKGGVAAVVDDR 749 (784)
Q Consensus 682 ~~i~~~~dl~~~~~~i~~~-~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~ 749 (784)
.+|++++||+ +++|++. .|+..+..++ +..+.+... .+.|.+..+.+.+|.. |++|+++...
T Consensus 136 s~i~sl~DL~--gk~v~~~~~Gs~~~~~~~~~l~~~Gi~~~~v~~v~~~g~~~a~~aL~~----G~vDa~~~~~ 203 (327)
T 4ddd_A 136 SNISVIDDIK--GKRVNIGSPGTGVRVAMLKLLGEKGWTKKDFSVMAELKSSEQAQALCD----NKIDVMVDVI 203 (327)
T ss_dssp SSCCSGGGGT--TSEEECCSTTSHHHHHHHHHHHHHTCCGGGCSEEECCCHHHHHHHHHT----TSCSBEEEEE
T ss_pred CCCCCHHHhC--CCEEecCCCCccHHHHHHHHHHHcCCChHhcchhhcCCHHHHHHHHHc----CCCCEEEEcc
Confidence 3799999998 7788885 4554332221 233443333 3678899999999999 8999988753
No 158
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=96.10 E-value=0.12 Score=50.14 Aligned_cols=127 Identities=13% Similarity=0.046 Sum_probs=87.3
Q ss_pred HHHHHHhcCceEEEccCchhhH--------HHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHH
Q 003958 88 EALHLMEGQTVAIIGPQDAVTS--------HVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV 159 (784)
Q Consensus 88 ~~~~li~~~v~aiiGp~~s~~~--------~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l 159 (784)
++..|...++.+|+-+..+.+. .....+.+..++|+++. +.++++.+
T Consensus 58 aa~~L~~ag~d~i~~aCtsas~~~G~~~~~~~~~~l~~~~~iPv~~~-------------------------~~A~~~al 112 (240)
T 3ixl_A 58 HARRLQKQGAAVVSLMCTSLSFYRGAAFNAALTVAMREATGLPCTTM-------------------------STAVLNGL 112 (240)
T ss_dssp HHHHHHHTTEEEEEECCHHHHHTTCHHHHHHHHHHHHHHHSSCEEEH-------------------------HHHHHHHH
T ss_pred HHHHhccCCCCEEEECCcHHHHhcccchHHHHHHHHHhccCCCEECH-------------------------HHHHHHHH
Confidence 3445555588888764444332 23345555678888863 46788888
Q ss_pred HHcCCcEEEEEEEcCCCcchhHHHHHHHHhccCcEEEEeeccCCC-------CChhHHHHHHHH-h-hcCCceEEEEecc
Q 003958 160 DHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVE-------ATEDEITDLLVK-V-ALTESRIIVVHTH 230 (784)
Q Consensus 160 ~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~-------~~~~d~~~~l~~-l-~~~~~~vIvl~~~ 230 (784)
++.|-++|+++.. |.....+.+++.+++.|+++......... .+...+...+++ + ...+++.||+.|.
T Consensus 113 ~~~g~~rvglltp---y~~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~adaivL~CT 189 (240)
T 3ixl_A 113 RALGVRRVALATA---YIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDSDGILLSSG 189 (240)
T ss_dssp HHTTCSEEEEEES---SCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCSEEEEECT
T ss_pred HHhCCCEEEEEeC---ChHHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCCEEEEeCC
Confidence 8999999999985 77777888999999999998765543321 134567778888 7 7789999999877
Q ss_pred CCcHHHHHHHHH
Q 003958 231 YNRGPVVFHVAQ 242 (784)
Q Consensus 231 ~~~~~~~~~~a~ 242 (784)
.=....++.+.+
T Consensus 190 ~l~~l~~i~~le 201 (240)
T 3ixl_A 190 GLLTLDAIPEVE 201 (240)
T ss_dssp TSCCTTHHHHHH
T ss_pred CCchhhhHHHHH
Confidence 544444444433
No 159
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=96.01 E-value=0.088 Score=55.10 Aligned_cols=207 Identities=11% Similarity=0.040 Sum_probs=114.9
Q ss_pred CceEEEEEEeecCCc--chhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCch
Q 003958 29 PSVVNIGALLSFSTN--VGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDA 106 (784)
Q Consensus 29 ~~~i~IG~i~~~~~~--~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s 106 (784)
...-.||+++|.... ........+..++++.=+ |+.+.+...+...+. .-.+....+..+++.+||-....
T Consensus 66 ~~s~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~------g~~~~~~~~~~~~~~-~~~~~~~~l~~~~vdGiIi~~~~ 138 (366)
T 3h5t_A 66 RRAGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAG------DTQLTLIPASPASSV-DHVSAQQLVNNAAVDGVVIYSVA 138 (366)
T ss_dssp --CCEEEEEESSCTTHHHHSHHHHHHHHHHHHHSS------SCEEEEEECCCCTTC-CHHHHHHHHHTCCCSCEEEESCC
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHh------hCCEEEEEcCCCccH-HHHHHHHHHHhCCCCEEEEecCC
Confidence 345679999986421 112233334444444211 566666655533321 12233445566677776532222
Q ss_pred hhHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEc-------------
Q 003958 107 VTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVD------------- 173 (784)
Q Consensus 107 ~~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d------------- 173 (784)
... .....+...++|+|..+... .+...+ .+......-+..+++.|...|.++|++|...
T Consensus 139 ~~~-~~~~~l~~~~iPvV~i~~~~---~~~~~~---~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~g~~~~~ 211 (366)
T 3h5t_A 139 KGD-PHIDAIRARGLPAVIADQPA---REEGMP---FIAPNNRKAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVTRE 211 (366)
T ss_dssp TTC-HHHHHHHHHTCCEEEESSCC---SCTTCC---EEEECHHHHTHHHHHHHHHTTCCSEEEEEECCSSSCCCEECCHH
T ss_pred CCh-HHHHHHHHCCCCEEEECCcc---CCCCCC---EEEeChHHHHHHHHHHHHHCCCCcEEEEecccccccccCccccc
Confidence 211 22344556799999875422 112223 3456666777888899988999999999832
Q ss_pred ------CCCcchhHHHHHHHHhccCcEEEEeecc-CCCCChhHHHHHHHHhhc--CCceEEEEeccCCcHHHHHHHHHHc
Q 003958 174 ------DDHGRNGIAALGDTLAAKRCRISFKAPL-SVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVFHVAQYL 244 (784)
Q Consensus 174 ------~~~g~~~~~~l~~~l~~~gi~v~~~~~~-~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~~~~a~~~ 244 (784)
........+.+++.+++.|+.+.....+ ....+..+-...++++.+ ..+++|+. .+...+..+++++++.
T Consensus 212 ~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~ 290 (366)
T 3h5t_A 212 RLENAQYQVQRDRVRGAMEVFIEAGIDPGTVPIMECWINNRQHNFEVAKELLETHPDLTAVLC-TVDALAFGVLEYLKSV 290 (366)
T ss_dssp HHHTCCCTTHHHHHHHHHHHHHHHTCCGGGSCEEEESSCCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHT
T ss_pred cccccccchHHHHHHHHHHHHHHCCCCCCcceEEEcCCCCHHHHHHHHHHHHcCCCCCcEEEE-CCcHHHHHHHHHHHHc
Confidence 2233566788999999988653210001 001122333334444432 35676655 4445677899999999
Q ss_pred CCCCCC
Q 003958 245 GMLGTG 250 (784)
Q Consensus 245 g~~~~~ 250 (784)
|+..|+
T Consensus 291 G~~vP~ 296 (366)
T 3h5t_A 291 GKSAPA 296 (366)
T ss_dssp TCCTTT
T ss_pred CCCCCC
Confidence 987654
No 160
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=95.88 E-value=0.0046 Score=55.42 Aligned_cols=77 Identities=16% Similarity=0.166 Sum_probs=60.9
Q ss_pred HHHHHHHhhheecccCCCCCCCccCCceeehhhhhhhhhccc--ccccccchhhHHHHHHHHHHHHHHhhccccceeeEe
Q 003958 599 FLAVGAVVWILEHRLNDEFRGPPKRQVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILT 676 (784)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~ 676 (784)
+++.+++++.+|+..+ +....++.+++|+++.++..-| +-.|.+..+|+++++|.++++.+.+..++.+++.++
T Consensus 63 i~~~a~~~~~~E~~~~----~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~ 138 (155)
T 2a9h_A 63 LLAGSYLAVLAERGAP----GAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFV 138 (155)
T ss_dssp HHHHHHHHHHHHTTSS----CSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCC----CCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777776432 2233468899999999998654 558999999999999999999999999999999887
Q ss_pred ecc
Q 003958 677 VQK 679 (784)
Q Consensus 677 ~~~ 679 (784)
...
T Consensus 139 ~~~ 141 (155)
T 2a9h_A 139 GRE 141 (155)
T ss_dssp SCC
T ss_pred HHH
Confidence 554
No 161
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=95.61 E-value=0.0092 Score=52.69 Aligned_cols=72 Identities=19% Similarity=0.198 Sum_probs=56.6
Q ss_pred HHHHHhhheecccCCCCCCCccCCceeehhhhhhhhhcc--cccccccchhhHHHHHHHHHHHHHHhhccccceeeEe
Q 003958 601 AVGAVVWILEHRLNDEFRGPPKRQVVTIFWFSFSTMFFA--HKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILT 676 (784)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~ 676 (784)
+.+.+++.+++.. .+....++.+++|+++.++..- |+-.|.+..+|+++++|.++++.+.+...+.+++.+.
T Consensus 21 ~~a~~~~~~e~~~----~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~ 94 (139)
T 3eff_K 21 AGSYLAVLAERGA----PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFV 94 (139)
T ss_dssp HHHHHHHHTTSSC----TTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhcCC----CCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566665533 1223356889999999999755 5668999999999999999999999999999988874
No 162
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=95.16 E-value=0.28 Score=49.70 Aligned_cols=73 Identities=14% Similarity=0.225 Sum_probs=49.1
Q ss_pred cCCCCChHhhhh------CCCceEEe-eCchHHHH---HHhhcccCccCceeCCCHHHHHHHHhcCCcCCCeeEEEechh
Q 003958 681 SSPIKGIDSLRS------SNYPIGYQ-VNSFARNY---LVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRA 750 (784)
Q Consensus 681 ~~~i~~~~dl~~------~~~~i~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~ 750 (784)
..+++|++||.+ .+..+|.. .|+..+-. +.+..+.. -..+.|+...+++.+|.. |++|+.+.+..
T Consensus 120 ds~~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~-~~~Vpy~G~~~a~~aL~~----G~VD~~~~~~~ 194 (312)
T 2f5x_A 120 DFPPNNIKELAEYVKKNADKISLANAGIGAASHLCGTMLVEALGVN-LLTIPYKGTAPAMNDLLG----KQVDLMCDQTT 194 (312)
T ss_dssp TCSCCSHHHHHHHHHHHGGGCEEEESSTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHHHHHT----TSSCEEEEEHH
T ss_pred CCCCCCHHHHHHHHHhCCCceEEeCCCCCcHHHHHHHHHHHHHCCC-eEEeccCChHHHHHHHHc----CCccEEEechH
Confidence 458999999975 23457776 35543322 22223332 234679999999999999 89999999877
Q ss_pred hhHHHHcC
Q 003958 751 YAELFLST 758 (784)
Q Consensus 751 ~~~~~~~~ 758 (784)
.+..+++.
T Consensus 195 ~~~~~i~~ 202 (312)
T 2f5x_A 195 NTTQQITS 202 (312)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 66555544
No 163
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=95.14 E-value=0.013 Score=51.40 Aligned_cols=55 Identities=15% Similarity=0.296 Sum_probs=48.5
Q ss_pred CCceeehhhhhhhhhcc--cccccccchhhHHHHHHHHHHHHHHhhccccceeeEee
Q 003958 623 RQVVTIFWFSFSTMFFA--HKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTV 677 (784)
Q Consensus 623 ~~~~~~~~~~~~~~~~~--~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~ 677 (784)
.++.+++|+++.++..- |+-.|.+..+|+++++|.++++.+.+...+.+++.+..
T Consensus 42 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~ 98 (137)
T 4h33_A 42 NNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRC 98 (137)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred CCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999999999754 56689999999999999999999999999999988753
No 164
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=94.70 E-value=0.33 Score=49.20 Aligned_cols=73 Identities=12% Similarity=0.131 Sum_probs=48.2
Q ss_pred cCCCCChHhhhh------CCCceEEe-eCchHHH---HHHhhcccCccCceeCCCHHHHHHHHhcCCcCCCeeEEEechh
Q 003958 681 SSPIKGIDSLRS------SNYPIGYQ-VNSFARN---YLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRA 750 (784)
Q Consensus 681 ~~~i~~~~dl~~------~~~~i~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~ 750 (784)
..+++|++||.+ ....+|.. .|+..+- .+.+..+.. -..+.|+...+++.+|.. |++++.+.+..
T Consensus 124 ds~~~tl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~-~~~Vpy~G~~~a~~al~~----G~vD~~~~~~~ 198 (314)
T 2dvz_A 124 KFPAKDFKGFLEELKKNPGKYSYGSSGTCGVLHLMGESFKMATGTD-IVHVPYKGSGPAVADAVG----GQIELIFDNLP 198 (314)
T ss_dssp TSSCSSHHHHHHHHHTSTTTCEEEESCTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHHHHHH----TSSSEEEEEHH
T ss_pred CCCCCCHHHHHHHHHhCCCcEEEeCCCCCcHHHHHHHHHHHHhCCC-eEEcccCCHHHHHHHHHc----CCceEEEEcHH
Confidence 458999999975 12456766 3553332 222223332 234679999999999999 89999998877
Q ss_pred hhHHHHcC
Q 003958 751 YAELFLST 758 (784)
Q Consensus 751 ~~~~~~~~ 758 (784)
.+..+++.
T Consensus 199 ~~~~~i~~ 206 (314)
T 2dvz_A 199 SSMPQIQA 206 (314)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 66555543
No 165
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=94.58 E-value=0.44 Score=48.05 Aligned_cols=73 Identities=14% Similarity=0.046 Sum_probs=48.1
Q ss_pred cCCCCChHhhhh------CCCceEEee-CchHHHH---HHhhcccCccCceeCCCHHHHHHHHhcCCcCCCeeEEEechh
Q 003958 681 SSPIKGIDSLRS------SNYPIGYQV-NSFARNY---LVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRA 750 (784)
Q Consensus 681 ~~~i~~~~dl~~------~~~~i~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~ 750 (784)
..+++|++||.+ .+..+|... |+..+-. +.+..+.. -..++|+...+++.+|.. |++|+.+.+..
T Consensus 111 ~s~~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~G~~-~~~Vpy~g~~~a~~al~~----G~vD~~~~~~~ 185 (301)
T 2qpq_A 111 GSKYKTLGELMAAAKQTNTQVTYGSCGNGTPQHLAGELLNVSAKTH-MVHVPYKGCGPALNDVLG----SQIGLAVVTAS 185 (301)
T ss_dssp TCSCCSHHHHHHHTCSSSCCCEEEESSTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHHHHHT----TSSSCEEEEHH
T ss_pred CCCCCCHHHHHHHHHhCCCceEEecCCCCcHHHHHHHHHHHHhCCC-eEEeccCChHHHHHHHHC----CCccEEEEcHH
Confidence 458999999975 123566653 5543322 22223332 234679999999999999 89999998877
Q ss_pred hhHHHHcC
Q 003958 751 YAELFLST 758 (784)
Q Consensus 751 ~~~~~~~~ 758 (784)
.+..+++.
T Consensus 186 ~~~~~i~~ 193 (301)
T 2qpq_A 186 SAIPFIKA 193 (301)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 66555543
No 166
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=93.85 E-value=0.4 Score=48.96 Aligned_cols=75 Identities=13% Similarity=0.152 Sum_probs=46.6
Q ss_pred CCCChHhhhhCCCceEEee-CchHHHH---HHhhcccCc-cCceeCCCHHHHHHHHhcCCcCC----CeeEEEechhhhH
Q 003958 683 PIKGIDSLRSSNYPIGYQV-NSFARNY---LVDELNIDE-SRLVPLNSPEEYAKALKDGPHKG----GVAAVVDDRAYAE 753 (784)
Q Consensus 683 ~i~~~~dl~~~~~~i~~~~-~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~----~~~a~~~~~~~~~ 753 (784)
+|++++|| ++||+.. |+....+ +.+..+.+. .+++.+.+..+.+.+|.+ | ++||++.+.....
T Consensus 111 ~i~s~~DL----K~i~~~~~gs~~~~~~~~l~~~~Gl~~dv~~v~~~~~~~~~~al~~----G~~~~~vDa~~~ep~~~~ 182 (321)
T 2x7q_A 111 DVTDAKQL----KRIGVSRIGSGSYVMSFVLAHQLGVPSFDQFQVLSNFKNLRDSVNL----KDGVEGSDAFMWEYFTSK 182 (321)
T ss_dssp TCSSGGGC----CEEEESSTTSHHHHHHHHHHHHHTSCCCCEEEECCSHHHHHHHHTT----CTTSCCCSEEEEEHHHHH
T ss_pred CCCChHHc----ceEEeeCCCcHHHHHHHHHHHhcCCCcceEEEEcCChHHHHHHHHc----CCCccceEEEEecCccch
Confidence 79999999 5799986 6643322 212223332 345566788899999999 7 8999887654444
Q ss_pred HHHcCCCCeEEeC
Q 003958 754 LFLSTRCEFSIVG 766 (784)
Q Consensus 754 ~~~~~~c~l~~~~ 766 (784)
...+ .-++..++
T Consensus 183 ~~~~-~g~~~~~~ 194 (321)
T 2x7q_A 183 KYYD-NHEIKQID 194 (321)
T ss_dssp HHHH-TTSEEEEE
T ss_pred hhcc-CCceEEcc
Confidence 3333 22344443
No 167
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=93.80 E-value=0.043 Score=43.08 Aligned_cols=52 Identities=12% Similarity=0.110 Sum_probs=45.0
Q ss_pred Cceeehhhhhhhhhccc--ccccccchhhHHHHHHHHHHHHHHhhccccceeeE
Q 003958 624 QVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSIL 675 (784)
Q Consensus 624 ~~~~~~~~~~~~~~~~~--~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l 675 (784)
++.+++|++..++..-| +-.|++..+|++...+.++++.+.+...+++++.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999997655 55899999999999999999999998888776543
No 168
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=93.67 E-value=0.0052 Score=56.10 Aligned_cols=58 Identities=21% Similarity=0.206 Sum_probs=50.7
Q ss_pred ccCCceeehhhhhhhhhcc--cccccccchhhHHHHHHHHHHHHHHhhccccceeeEeec
Q 003958 621 PKRQVVTIFWFSFSTMFFA--HKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQ 678 (784)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~--~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~ 678 (784)
...++.+++|+++.++..- |+-.|.+..+|+++++|.++++++.+...+.+++.++..
T Consensus 64 ~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~ 123 (166)
T 3pjs_K 64 QLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQ 123 (166)
T ss_dssp CCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSS
T ss_pred ccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457889999999999755 456899999999999999999999999999999998643
No 169
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=93.04 E-value=0.031 Score=45.57 Aligned_cols=57 Identities=12% Similarity=0.313 Sum_probs=49.5
Q ss_pred Cceeehhhhhhhhhccc--ccccccchhhHHHHHHHHHHHHHHhhccccceeeEeeccc
Q 003958 624 QVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKL 680 (784)
Q Consensus 624 ~~~~~~~~~~~~~~~~~--~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~ 680 (784)
++.+++|+++.++..-| +-.|++..+|++...|.++++.+.+...+.+++.+..++.
T Consensus 32 ~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~~~ 90 (97)
T 3ouf_A 32 RPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSI 90 (97)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 58899999999997654 5589999999999999999999999999999888765543
No 170
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=92.97 E-value=1.9 Score=42.49 Aligned_cols=125 Identities=18% Similarity=0.080 Sum_probs=79.4
Q ss_pred HHHHHHhcCceEEEccCchhhHH--------HHHHhhhcC-----CccEEecccCCCCCCcCCCCceEeecCChHHHHHH
Q 003958 88 EALHLMEGQTVAIIGPQDAVTSH--------VVSHVANEL-----QVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAA 154 (784)
Q Consensus 88 ~~~~li~~~v~aiiGp~~s~~~~--------~va~~~~~~-----~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~a 154 (784)
.+..+...++.+|+-+..+.... ....+.+.. ++|+++. ..+
T Consensus 82 aa~~L~~~g~d~IviaCnta~~~~G~~~~~~~~~~l~~~~~~~~~~iPv~~~-------------------------~~A 136 (273)
T 2xed_A 82 CVLEIADAAPEVILYACLVAVMVGGPGEHHRVESAVAEQLATGGSQALVRSS-------------------------AGA 136 (273)
T ss_dssp HHHHHHTTCCSEEEECCHHHHHTTCTTHHHHHHHHHHHHHHHTTCCCEEEEH-------------------------HHH
T ss_pred HHHHHhhcCCCEEEECCChHHHhcccchhHHHHHHHHHHhhccCCCCCEecH-------------------------HHH
Confidence 33444455888887644443211 123344444 7888863 245
Q ss_pred HHHHHHHcCCcEEEEEEEcCCCcchhHHHHHHHHhccCcEEEEeeccCCC-------CChhHHHHHHHHhhcCCceEEEE
Q 003958 155 IAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVE-------ATEDEITDLLVKVALTESRIIVV 227 (784)
Q Consensus 155 i~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~-------~~~~d~~~~l~~l~~~~~~vIvl 227 (784)
+++.++..+-++|+++. .|.....+.+++.+++.|+++......... .+...+...++++...++++||+
T Consensus 137 ~~~al~~~g~~rvgvlt---p~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gadaIvL 213 (273)
T 2xed_A 137 LVEGLRALDAQRVALVT---PYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDALVI 213 (273)
T ss_dssp HHHHHHHTTCCEEEEEE---CSCHHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCSEEEE
T ss_pred HHHHHHHcCCCeEEEEc---CChhhhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCCEEEE
Confidence 66666777889999996 455556678888888899987655443321 13455777778887788999999
Q ss_pred e-ccCCcHHHHHHH
Q 003958 228 H-THYNRGPVVFHV 240 (784)
Q Consensus 228 ~-~~~~~~~~~~~~ 240 (784)
. |..-....+..+
T Consensus 214 g~CT~l~~~~~~~~ 227 (273)
T 2xed_A 214 SCAVQMPSLPLVET 227 (273)
T ss_dssp ESSSSSCCTTHHHH
T ss_pred cCCCCcchHHhHHH
Confidence 9 876444334443
No 171
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=92.81 E-value=0.56 Score=47.50 Aligned_cols=61 Identities=13% Similarity=0.097 Sum_probs=40.6
Q ss_pred CCCCChHhhhhCCCceEE-eeCchHHHHHH---hhcccCccCc--eeCCCHHHHHHHHhcCCcCCCeeEEEec
Q 003958 682 SPIKGIDSLRSSNYPIGY-QVNSFARNYLV---DELNIDESRL--VPLNSPEEYAKALKDGPHKGGVAAVVDD 748 (784)
Q Consensus 682 ~~i~~~~dl~~~~~~i~~-~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~a~~~~ 748 (784)
.+|++++||+ +.++++ ..|+..+..++ +..+.....+ ..+.+..+.+.+|.. |++++.+..
T Consensus 121 ~~i~sl~dL~--g~~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~----G~vda~~~~ 187 (314)
T 1us5_A 121 AGIRTVADLK--GKRVVVGDVGSGTEQNARQILEAYGLTFDDLGQAIRVSASQGIQLMQD----KRADALFYT 187 (314)
T ss_dssp SSCSSGGGGT--TSEEECCCTTCHHHHHHHHHHHHTTCCGGGSSEEECCCHHHHHHHHHT----TSCSEEEEE
T ss_pred CCCCcHHHhC--CCEeecCCCCchHHHHHHHHHHHcCCCHHHcCceecCCHHHHHHHHHc----CCccEEEEc
Confidence 3789999999 677887 45664433322 2233333333 356778899999999 889988865
No 172
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=92.76 E-value=0.06 Score=45.34 Aligned_cols=55 Identities=13% Similarity=0.309 Sum_probs=47.4
Q ss_pred Cceeehhhhhhhhhccc--ccccccchhhHHHHHHHHHHHHHHhhccccceeeEeec
Q 003958 624 QVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQ 678 (784)
Q Consensus 624 ~~~~~~~~~~~~~~~~~--~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~ 678 (784)
++.+++|+++.++..-| +-.|++..+|++...|.++++.+.....+.+++.+...
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~ 105 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 105 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999998655 55899999999999999999999999999888877433
No 173
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=92.50 E-value=0.23 Score=52.93 Aligned_cols=64 Identities=3% Similarity=0.062 Sum_probs=42.6
Q ss_pred HhhhhCCCceEEe-eCchHHHHHHh---hcccCc---cCceeCCCHHHHHHHHhcCCcCCCeeEEEechhhhHHHHcC
Q 003958 688 DSLRSSNYPIGYQ-VNSFARNYLVD---ELNIDE---SRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLST 758 (784)
Q Consensus 688 ~dl~~~~~~i~~~-~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~ 758 (784)
+||+ |++||+. .++..+.+++. ..+.++ .+++.+ .+.+++.+|++ |++||++...+.......+
T Consensus 151 ~dLk--Gk~iav~~~gs~~~~~l~~~L~~~Gl~~~~dv~~v~~-~~~~~~~aL~~----G~vDa~~~~eP~~~~~~~~ 221 (417)
T 2g29_A 151 AKVT--DPKVAMTFPGGTHDMWIRYWLAAGGMEPGKDFSTIVV-PPAQMVANVKV----NAMESFCVGEPWPLQTVNQ 221 (417)
T ss_dssp HTSS--SCEEEESSTTSHHHHHHHHHHHHTTCCBTTTBEEEEC-CGGGHHHHHHT----TSCSEEEEETTHHHHHHHH
T ss_pred HhcC--CCEEEEeCCCCHHHHHHHHHHHHcCCCCCCceEEEEC-CHHHHHHHHHc----CCCCEEEeCCCHHHHHHHc
Confidence 6777 8899998 46644333321 233332 234444 56789999999 8999999888877666554
No 174
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=92.26 E-value=0.12 Score=52.48 Aligned_cols=58 Identities=14% Similarity=0.121 Sum_probs=50.5
Q ss_pred cCCceeehhhhhhhhhcc--cccccccchhhHHHHHHHHHHHHHHhhccccceeeEeecc
Q 003958 622 KRQVVTIFWFSFSTMFFA--HKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQK 679 (784)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~--~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~ 679 (784)
..++.+++|+++.++..- |.-.|.+..+|++++++.++++++.+.-++.+++.++.++
T Consensus 94 ~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~ 153 (333)
T 1p7b_A 94 PPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPR 153 (333)
T ss_dssp SSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred CCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346889999999999855 4558999999999999999999999999999998887665
No 175
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=91.06 E-value=0.12 Score=49.65 Aligned_cols=73 Identities=11% Similarity=0.214 Sum_probs=56.0
Q ss_pred HHHHHHhhheecccCCCCCCCccCCceeehhhhhhhhhcc--cccccccchhhHHHHHHHHHHHHHHhhccccceeeEe
Q 003958 600 LAVGAVVWILEHRLNDEFRGPPKRQVVTIFWFSFSTMFFA--HKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILT 676 (784)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~ 676 (784)
++.+.+++.+++..+ +....++.+++|+++.++..- |+..|.+..+|+++..+.++++.+.+...+.+++.+.
T Consensus 145 ~~~~~~~~~~e~~~~----~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~ 219 (223)
T 1orq_C 145 LYGAFAIYIVEYPDP----NSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQ 219 (223)
T ss_dssp HHHHHHHHHTTSSST----TCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCc----CCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666655221 223357889999999999855 4558999999999999999999999999999887764
No 176
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=91.02 E-value=0.22 Score=44.25 Aligned_cols=53 Identities=13% Similarity=0.296 Sum_probs=46.4
Q ss_pred Cceeehhhhhhhhhccc--ccccccchhhHHHHHHHHHHHHHHhhccccceeeEe
Q 003958 624 QVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILT 676 (784)
Q Consensus 624 ~~~~~~~~~~~~~~~~~--~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~ 676 (784)
++.+++|+++.++..-| +-.|.+..+|+++++|.++++.+.+...+++++.+.
T Consensus 52 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~ 106 (148)
T 3vou_A 52 RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQ 106 (148)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999998665 558999999999999999999999998888877653
No 177
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=90.59 E-value=3.3 Score=38.49 Aligned_cols=68 Identities=13% Similarity=0.078 Sum_probs=45.6
Q ss_pred eeeHHHHHHHHHHC-CCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeEEeecCccccceeccccccccEEEEEe
Q 003958 494 GFCIDVFTAAINLL-PYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIITNRTKMADFTQPYIESGLVVVAP 572 (784)
Q Consensus 494 G~~~dl~~~l~~~l-~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~ 572 (784)
.+..+++..+.+.. +.+ +++.. +....+...|.+|++|+++...... ...+. ..++....+.++++
T Consensus 17 ~~l~~~l~~~~~~~P~i~--i~i~~-------~~~~~~~~~l~~g~~Dl~i~~~~~~---~~~~~-~~~l~~~~~~~v~~ 83 (219)
T 3jv9_A 17 YLLPKLIVSLRRTAPKMP--LMLEE-------NYTHTLTESLKRGDVDAIIVAEPFQ---EPGIV-TEPLYDEPFFVIVP 83 (219)
T ss_dssp HHHHHHHHHHHHHSTTCC--EEEEE-------ECHHHHHHHHHHTSSSEEEEESSCC---CTTEE-EEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCcE--EEEEe-------CCcHHHHHHHHcCCCCEEEEcCCCC---CCCee-EEEeeeceEEEEEe
Confidence 35567778887776 455 55443 3567899999999999998654322 22222 35677788888886
Q ss_pred cc
Q 003958 573 VR 574 (784)
Q Consensus 573 ~~ 574 (784)
+.
T Consensus 84 ~~ 85 (219)
T 3jv9_A 84 KG 85 (219)
T ss_dssp TT
T ss_pred CC
Confidence 65
No 178
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=90.17 E-value=0.31 Score=54.34 Aligned_cols=121 Identities=12% Similarity=0.069 Sum_probs=72.3
Q ss_pred Cceeehhhhhhhhhccc--ccccccchhhHHHHHHHHHHHHHHhhcccc-ceeeEeeccc----cCC-CCChHhhhhCCC
Q 003958 624 QVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTAS-LTSILTVQKL----SSP-IKGIDSLRSSNY 695 (784)
Q Consensus 624 ~~~~~~~~~~~~~~~~~--~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~-L~s~l~~~~~----~~~-i~~~~dl~~~~~ 695 (784)
++.+++||++.++..-| .-.|.+..+|+++++|.++++.++....+. ++++++.+.. ... .....+.. ..
T Consensus 51 ~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 128 (565)
T 4gx0_A 51 SFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFLAPWIERRLRYHPTIELPDDT--RG 128 (565)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTSCCCBCCCCTTC--CS
T ss_pred chhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc--CC
Confidence 68899999999998665 447999999999999999999988877776 4444432211 111 11111111 22
Q ss_pred ceEEe-eCchHHHHHHhhcccCccCceeCCCHHHHHHHHhcCCcCC-CeeEEEechhh
Q 003958 696 PIGYQ-VNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKG-GVAAVVDDRAY 751 (784)
Q Consensus 696 ~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~a~~~~~~~ 751 (784)
.+-+. -|.......+ ........++-.+..++.++.+++ . +..++..|...
T Consensus 129 hviI~G~g~~g~~la~-~L~~~~~~vvvid~~~~~~~~~~~----~~~~~~i~Gd~~~ 181 (565)
T 4gx0_A 129 HILIFGIDPITRTLIR-KLESRNHLFVVVTDNYDQALHLEE----QEGFKVVYGSPTD 181 (565)
T ss_dssp CEEEESCCHHHHHHHH-HTTTTTCCEEEEESCHHHHHHHHH----SCSSEEEESCTTC
T ss_pred eEEEECCChHHHHHHH-HHHHCCCCEEEEECCHHHHHHHHH----hcCCeEEEeCCCC
Confidence 34443 3433344442 222222344455666666777766 5 66677776543
No 179
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=90.13 E-value=0.19 Score=50.35 Aligned_cols=58 Identities=14% Similarity=0.119 Sum_probs=49.8
Q ss_pred cCCceeehhhhhhhhhcc--cccccccchhhHHHHHHHHHHHHHHhhccccceeeEeecc
Q 003958 622 KRQVVTIFWFSFSTMFFA--HKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQK 679 (784)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~--~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~ 679 (784)
..++.+++|+++.++..- |.-.|.+..+|+++.++.++++++.+.-++.+.+.+..++
T Consensus 80 ~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~~ 139 (301)
T 1xl4_A 80 PGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRPT 139 (301)
T ss_dssp TTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred cCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 456889999999999754 5558999999999999999999999999998888886543
No 180
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=90.12 E-value=0.11 Score=53.52 Aligned_cols=58 Identities=10% Similarity=0.111 Sum_probs=46.9
Q ss_pred Cceeehhhhhhhhhccc--ccccccchhhHHHHHHHHHHHHHHhhccccceeeEeecccc
Q 003958 624 QVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLS 681 (784)
Q Consensus 624 ~~~~~~~~~~~~~~~~~--~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~ 681 (784)
++.+++|+++.++..-| .-.|.+..+|+++++|.++++++.+...+.+++.+......
T Consensus 45 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 104 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQM 104 (336)
T ss_dssp CSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC------
T ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999998655 45899999999999999999999999999999988876543
No 181
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=89.33 E-value=4.4 Score=38.48 Aligned_cols=86 Identities=8% Similarity=-0.092 Sum_probs=58.6
Q ss_pred HHHHHHHHHHcCCcEEEEEEEcCCCcchhHHHHHHHHhccCcEEEEeeccCCC-------CChhHHHHHHHHhhcC--Cc
Q 003958 152 MAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVE-------ATEDEITDLLVKVALT--ES 222 (784)
Q Consensus 152 ~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~-------~~~~d~~~~l~~l~~~--~~ 222 (784)
..++++.++..|-++|+++. .|.....+.+++.+++.|+.+......... .+...+...++++.+. ++
T Consensus 96 ~~a~~~a~~~~g~~rvgvlt---~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ga 172 (223)
T 2dgd_A 96 EESVYELLKKLNVRKLWIGT---PYIKERTLEEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLKA 172 (223)
T ss_dssp HHHHHHHHHHTTCCEEEEEE---SSCHHHHHHHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHHTTS
T ss_pred HHHHHHHHHHcCCCeEEEEe---CCchHHHHHHHHHHHhCCcEEecccCCCCCCcchhhccCHHHHHHHHHHHhcccCCC
Confidence 46677777778889999996 455666678888899999987655443321 1234566777777666 89
Q ss_pred eEEEEeccCCcHHHHHHH
Q 003958 223 RIIVVHTHYNRGPVVFHV 240 (784)
Q Consensus 223 ~vIvl~~~~~~~~~~~~~ 240 (784)
++||+.|..-....+..+
T Consensus 173 daIvLgCT~l~~~~~~~~ 190 (223)
T 2dgd_A 173 DAVYIACTALSTYEAVQY 190 (223)
T ss_dssp SEEEECCTTSCCTTHHHH
T ss_pred CEEEEeCCcccHHHHHHH
Confidence 999998776444333443
No 182
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=89.29 E-value=2 Score=44.56 Aligned_cols=60 Identities=13% Similarity=0.124 Sum_probs=43.5
Q ss_pred cCCCCChHhhhhCCCceEEeeCchHHHHHHhhcccCccCceeCCCHHHHHHHHhcCCcCCCeeEEEechhhh
Q 003958 681 SSPIKGIDSLRSSNYPIGYQVNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYA 752 (784)
Q Consensus 681 ~~~i~~~~dl~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~ 752 (784)
..+|++++||+ |++|.+. +.....+++ ..+..+ +. -...|.+.+|++ |.+|+.....+..
T Consensus 163 ~~pI~s~~DLk--G~kirv~-~~~~~~~~~-~lGa~p---v~-~~~~e~~~ALq~----G~VDg~~~~~~~~ 222 (361)
T 2zzv_A 163 KKPIRRFEDFK--GVKLRVP-GGMIAEVFA-AAGAST---VL-LPGGEVYPALER----GVIDAADFVGPAV 222 (361)
T ss_dssp SSCCCSGGGGT--TCEEECC-SHHHHHHHH-HTTCEE---EC-CCGGGHHHHHHT----TSCSEEECSCHHH
T ss_pred CCCcCChHHhC--CCEEeec-CHHHHHHHH-HcCCee---ee-cChHHHHHHHHc----CCcceeecCCcch
Confidence 35899999999 9999988 544555663 344322 22 256789999999 8899998776665
No 183
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=88.97 E-value=3.4 Score=38.60 Aligned_cols=68 Identities=12% Similarity=0.062 Sum_probs=44.3
Q ss_pred eeeHHHHHHHHHHC-CCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeEEeecCccccceeccccccccEEEEEe
Q 003958 494 GFCIDVFTAAINLL-PYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIITNRTKMADFTQPYIESGLVVVAP 572 (784)
Q Consensus 494 G~~~dl~~~l~~~l-~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~ 572 (784)
.+..+++..+.+.. +.+ +++.. +....++..|.+|++|+++..-... ...+. ..++....++++++
T Consensus 21 ~~l~~~l~~f~~~~P~i~--i~i~~-------~~~~~~~~~l~~g~~Di~i~~~~~~---~~~~~-~~~l~~~~~~~v~~ 87 (222)
T 4ab5_A 21 DWLMPAMGEFRPMWPQVE--LDIVS-------GFQADPVGLLLQHRADLAIVSEAEK---QNGIS-FQPLFAYEMVGICA 87 (222)
T ss_dssp HHHHHHHHHHHHHSTTEE--EEEEC-------CCCSCTHHHHHTTSCSEEEESCCCC---CTTEE-EEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHCCCcE--EEEec-------CCHHHHHHHHHcCCcCEEEecCCCC---cCCeE-EEEeecCcEEEEec
Confidence 45567788888776 444 55443 3456789999999999998743322 22232 35677778888876
Q ss_pred cc
Q 003958 573 VR 574 (784)
Q Consensus 573 ~~ 574 (784)
+.
T Consensus 88 ~~ 89 (222)
T 4ab5_A 88 PD 89 (222)
T ss_dssp TT
T ss_pred CC
Confidence 55
No 184
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=88.10 E-value=5.4 Score=37.89 Aligned_cols=83 Identities=8% Similarity=0.060 Sum_probs=54.2
Q ss_pred CccEEEEecCCCccceeEeeCCCcceeeeeHHHHHHHHHHC-CCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEee
Q 003958 467 GRHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLL-PYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGD 545 (784)
Q Consensus 467 ~~~l~v~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l-~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~ 545 (784)
.+.|+|++... + ...+...++..+.+.. +.+ +++.. +....++..|.+|++|+++..
T Consensus 18 ~g~l~Ig~~~~--~-----------~~~~l~~~l~~f~~~~P~i~--l~~~~-------~~~~~~~~~l~~g~~Dl~i~~ 75 (241)
T 3oxn_A 18 DQTFTIATTDY--A-----------MQTILPFALPRIYQEAPNVS--FNFLP-------LQHDRLSDQLTYEGADLAICR 75 (241)
T ss_dssp CCEEEEEECSH--H-----------HHHTHHHHHHHHHHHCTTCE--EEEEE-------CCGGGHHHHHHTSCCSEEEEC
T ss_pred CceEEEEechH--H-----------HHHHHHHHHHHHHHHCCCCE--EEEEE-------CCcccHHHHHHcCCCCEEEec
Confidence 35678777542 1 2345667788888776 455 55443 356789999999999999874
Q ss_pred EEeecCccccceeccccccccEEEEEeccC
Q 003958 546 IAIITNRTKMADFTQPYIESGLVVVAPVRK 575 (784)
Q Consensus 546 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~ 575 (784)
.. .....+. ..++....+++++++..
T Consensus 76 ~~---~~~~~~~-~~~l~~~~~~~v~~~~h 101 (241)
T 3oxn_A 76 PT---GPVEPLR-SEILGRVGVLCLLSKQH 101 (241)
T ss_dssp CS---SCCTTEE-EEEEECCCEEEEEETTS
T ss_pred CC---CCCccce-eEEeecccEEEEEeCCC
Confidence 32 2222332 35677888888886653
No 185
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=87.38 E-value=9.8 Score=38.34 Aligned_cols=126 Identities=10% Similarity=0.087 Sum_probs=78.7
Q ss_pred EEEEEeecCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCchhhHHHH
Q 003958 33 NIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVTSHVV 112 (784)
Q Consensus 33 ~IG~i~~~~~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s~~~~~v 112 (784)
+||.+.............|+..++++.|- ..++...+..+-.++..+.+.+.+++++++.+|+...+. .+..+
T Consensus 131 ~Ig~i~g~~~~~~~~r~~Gf~~~~~~~~~------~~~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~~d~-~a~Gv 203 (318)
T 2fqx_A 131 AVGFIVGMELGMMPLFEAGFEAGVKAVDP------DIQVVVEVANTFSDPQKGQALAAKLYDSGVNVIFQVAGG-TGNGV 203 (318)
T ss_dssp EEEEEESCCSTTTHHHHHHHHHHHHHHCT------TCEEEEEECSCSSCHHHHHHHHHHHHHTTCCEEEEECGG-GHHHH
T ss_pred EEEEEeCcccHHHHHHHHHHHHHHHHHCC------CCEEEEEEccCccCHHHHHHHHHHHHHCCCcEEEECCCC-CchHH
Confidence 57877655433334557899999998762 345544443333478888899999999899998875443 33344
Q ss_pred HHhhhc-----CCccEEecccCCCCCCc---CCCCceEeecCChHHHHHHHHHHHHHcCCc
Q 003958 113 SHVANE-----LQVPLLSFSATDPTLSS---LQFPYFVRTTQSDQYQMAAIAEIVDHYGWR 165 (784)
Q Consensus 113 a~~~~~-----~~ip~Is~~a~~~~l~~---~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~ 165 (784)
...+.. .++.+|.+......... ...|.+..+..+-...+...++.+..-.|+
T Consensus 204 ~~a~~e~g~~P~dv~viG~D~~~~~~~~~~~~~~~~LTsv~~~~~~~~~~a~~~~~~g~~~ 264 (318)
T 2fqx_A 204 IKEARDRRLNGQDVWVIGVDRDQYMDGVYDGSKSVVLTSMVKRADVAAERISKMAYDGSFP 264 (318)
T ss_dssp HHHHHHHHHTTCCCEEEEEESCCGGGGBCSSSCBSEEEEEEECHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHhhhhccCCcEEEEEecchhhhccccCCCCeEEEEEEEEHHHHHHHHHHHHHcCCCC
Confidence 444444 67888887653322210 023556666666677777777777665564
No 186
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=86.45 E-value=8 Score=39.71 Aligned_cols=89 Identities=12% Similarity=0.014 Sum_probs=65.7
Q ss_pred EEEEEEeecCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCchhhHHH
Q 003958 32 VNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVTSHV 111 (784)
Q Consensus 32 i~IG~i~~~~~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s~~~~~ 111 (784)
=+||.+.......-.....|+..++++.| |..++.+.+..+-.|+..+.+.+..++++++.+|+...+.. .
T Consensus 150 ~kIGfVgg~~~p~v~~~~~GF~~G~k~~n------p~i~v~~~~~g~~~d~~kg~~~a~~l~~~G~DvIf~~~d~~---G 220 (356)
T 3s99_A 150 GIAGYIGSVPVPEVVQGINSFMLGAQSVN------PDFRVKVIWVNSWFDPGKEADAAKALIDQGVDIITQHTDST---A 220 (356)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHHTTC------TTCEEEEEECSSSCCHHHHHHHHHHHHHTTCSEEEESSSSS---H
T ss_pred CEEEEECCCccHHHHHHHHHHHHHHHHHC------CCCEEEEEECCCCCChHHHHHHHHHHHhCCCcEEEECCCch---H
Confidence 36888877653323345789999999876 45677776666557999999999999999999998765543 3
Q ss_pred HHHhhhcCCccEEecccC
Q 003958 112 VSHVANELQVPLLSFSAT 129 (784)
Q Consensus 112 va~~~~~~~ip~Is~~a~ 129 (784)
+...+...++..|.+...
T Consensus 221 v~~aa~e~Gv~vIG~D~d 238 (356)
T 3s99_A 221 AIQVAHDRGIKAFGQASD 238 (356)
T ss_dssp HHHHHHHTTCEEEEEESC
T ss_pred HHHHHHHcCCEEEEEcCc
Confidence 456677789988887554
No 187
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=86.33 E-value=0.34 Score=50.33 Aligned_cols=77 Identities=14% Similarity=0.213 Sum_probs=58.5
Q ss_pred HHHHHHHHhhheecccCCCCCCCccCCceeehhhhhhhhhccc--ccccccchhhHHHHHHHHHHHHHHhhccccceeeE
Q 003958 598 FFLAVGAVVWILEHRLNDEFRGPPKRQVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSIL 675 (784)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l 675 (784)
.+++.+.+++.+++..+++ ...++.+++|+++.++..-| +-.|.+..+|++++++.++++++.+...+.+++.+
T Consensus 139 ~~~~~a~~~~~~e~~~~~~----~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~ 214 (355)
T 3beh_A 139 VLFAVALAAYVIERDIQPE----KFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGF 214 (355)
T ss_dssp HHHHHHHHHHHHHTTTCHH----HHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCc----ccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335566667666543221 12368899999999998554 55899999999999999999999999999998877
Q ss_pred eec
Q 003958 676 TVQ 678 (784)
Q Consensus 676 ~~~ 678 (784)
...
T Consensus 215 ~~~ 217 (355)
T 3beh_A 215 YQE 217 (355)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 188
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=85.56 E-value=1.3 Score=43.80 Aligned_cols=57 Identities=16% Similarity=-0.056 Sum_probs=35.9
Q ss_pred HhhhhCCCceEEe-eCchHHHHHHhhcccCccCceeCCCHHHHHHHHhcCCcCCCeeEEEec-hhhhH
Q 003958 688 DSLRSSNYPIGYQ-VNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDD-RAYAE 753 (784)
Q Consensus 688 ~dl~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~-~~~~~ 753 (784)
+||+ |++||+. .++..+.+++.... ..++ .+.+..+...+|.+ |++||.+.. .+.+.
T Consensus 99 ~DLk--GK~Iav~~~~s~~~~ll~~~l~--~~~~-~~~~~~~~~~al~~----G~vDa~~~~~~~~~~ 157 (280)
T 1zbm_A 99 ISLD--GKRIAVPGRYTTANLLLKLAVE--DFEP-VEMPFDRIIQAVLD----EEVDAGLLIHEGQIT 157 (280)
T ss_dssp CCCT--TCEEEESCTTSHHHHHHHHHCS--SCEE-EECCGGGHHHHHHT----TSSSEEEECSGGGGT
T ss_pred hhcC--CCEEEecCCCcHHHHHHHHHhc--cCce-EecCHHHHHHHHHc----CCCCEEEEechHHhH
Confidence 7888 8999996 45544433532222 1233 24466789999999 899998744 34444
No 189
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=85.36 E-value=2.9 Score=39.42 Aligned_cols=69 Identities=10% Similarity=-0.019 Sum_probs=46.2
Q ss_pred eeeHHHHHHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeEEeecCccccceeccccccccEEEEEec
Q 003958 494 GFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIITNRTKMADFTQPYIESGLVVVAPV 573 (784)
Q Consensus 494 G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~ 573 (784)
.+..+++..+.+... ++++++.. +....++..|.+|++|+++....... ..+. ..++....+++++++
T Consensus 24 ~~l~~~l~~~~~~~P-~v~i~~~~-------~~~~~~~~~l~~g~~Dl~i~~~~~~~---~~l~-~~~l~~~~~~~v~~~ 91 (232)
T 3ho7_A 24 YLLPRVFPIWKKELA-GLEIHVSE-------MQTSRCLASLLSGEIDMAIIASKAET---EGLE-DDLLYYEEFLGYVSR 91 (232)
T ss_dssp HHHHHHHHHHHHHST-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEESSCCCC---TTEE-EEEEEEEEEEEEECT
T ss_pred hhhHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCCCEEEEcCCCCC---CCeE-EEEecccCEEEEEcC
Confidence 356677888887763 23355543 45778999999999999986543322 2222 356777888888865
Q ss_pred c
Q 003958 574 R 574 (784)
Q Consensus 574 ~ 574 (784)
.
T Consensus 92 ~ 92 (232)
T 3ho7_A 92 C 92 (232)
T ss_dssp T
T ss_pred C
Confidence 5
No 190
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=85.25 E-value=0.56 Score=47.37 Aligned_cols=56 Identities=14% Similarity=0.108 Sum_probs=49.4
Q ss_pred Cceeehhhhhhhhhcc--cccccccchhhHHHHHHHHHHHHHHhhccccceeeEeecc
Q 003958 624 QVVTIFWFSFSTMFFA--HKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQK 679 (784)
Q Consensus 624 ~~~~~~~~~~~~~~~~--~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~ 679 (784)
++.+++|+++.++..- |.-.|.+..+|+++.++.+.++++.+.-++.+++.++.++
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~ 135 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPK 135 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999755 5568999999999999999999999999999998887654
No 191
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=84.93 E-value=3.8 Score=41.90 Aligned_cols=66 Identities=15% Similarity=0.195 Sum_probs=40.5
Q ss_pred cCCCCChHhhhhCCCceEEeeCchHHHHHHh---hcccCccCceeCCCHHHHHHHHhcCCcCCCeeEEEechhhhH
Q 003958 681 SSPIKGIDSLRSSNYPIGYQVNSFARNYLVD---ELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAE 753 (784)
Q Consensus 681 ~~~i~~~~dl~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~ 753 (784)
.+.+++++||+ |++||+..++ .+.+++. ..+.+...+.......+...++.+ +.+||.+.-.+...
T Consensus 100 ~~~~~~~~dLk--GK~ig~~~~~-~~~~l~~~L~~~Gl~~~dv~~v~~~~~~~~al~~----G~vDa~~~~~p~~~ 168 (342)
T 4esw_A 100 SGITSDFQSLK--GKRIGYVGEF-GKIQVDELTKHYGMTPDDYVAVRCGMNVAKYILE----GTIDCGIGIECIQQ 168 (342)
T ss_dssp SSCCSSGGGGT--TCEEEESSSH-HHHHHHHHHGGGTCCGGGSEEEECGGGHHHHHHH----TSSSEEEEETTTHH
T ss_pred ccccCCHHHhC--CCEEEecCCc-hHHHHHHHHHHcCCChhheEEecCCHHHHHHHHc----CCCCEEEEeccchH
Confidence 45678899999 9999986433 3333322 233443433333333456678888 89999887655443
No 192
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=84.81 E-value=4.3 Score=43.06 Aligned_cols=68 Identities=12% Similarity=0.245 Sum_probs=44.8
Q ss_pred hHhh-hhCCC--ceEEe-eCchHHHHHH---hhcccCcc---CceeCCCHHHHHHHHhcCCcCCCeeEEEechhhhHHHH
Q 003958 687 IDSL-RSSNY--PIGYQ-VNSFARNYLV---DELNIDES---RLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFL 756 (784)
Q Consensus 687 ~~dl-~~~~~--~i~~~-~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~ 756 (784)
++|| ++.|+ +||+. .++....+++ +..+.++. +++.+ .+.+...+|++ +++||++...+......
T Consensus 153 i~dL~k~~GK~~~Iav~~~gs~~~~~l~~~L~~~Gl~p~~DV~~v~~-~~~~~~~aL~~----G~iDa~~~~eP~~~~a~ 227 (429)
T 2i49_A 153 IKGFNKTNGRKFKAAHTFPNVNQDFWIRYWFAAGGVDPDTDIDLLAV-PPAETVQGMRN----GTMDAFSTGDPWPYRIV 227 (429)
T ss_dssp HHTHHHHHSSCCEEEESSTTSHHHHHHHHHHHHTTCCTTTTSEEEEC-CHHHHHHHHHH----TCCCEEEEETTHHHHHH
T ss_pred HHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCCCcEEEEEC-ChHHHHHHHHc----CCccEEEeccchHHHHH
Confidence 6888 74566 89997 5664433332 22344332 33334 67899999999 89999998888876665
Q ss_pred cCC
Q 003958 757 STR 759 (784)
Q Consensus 757 ~~~ 759 (784)
++.
T Consensus 228 ~~g 230 (429)
T 2i49_A 228 TEN 230 (429)
T ss_dssp HTT
T ss_pred HCC
Confidence 543
No 193
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=83.99 E-value=9.3 Score=36.31 Aligned_cols=111 Identities=15% Similarity=0.157 Sum_probs=60.8
Q ss_pred HHHHHhcCceEEEccCchhhHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEE
Q 003958 89 ALHLMEGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVI 168 (784)
Q Consensus 89 ~~~li~~~v~aiiGp~~s~~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ 168 (784)
+..+...++.+|+-+.++. ..+..+-+..++|++... .+.++.....+ ++|+
T Consensus 68 ~~~l~~~g~d~iviaCnta--~~~~~l~~~~~iPvi~i~-------------------------~~~~~~a~~~~-~rig 119 (228)
T 2eq5_A 68 AKEFEREGVDAIIISCAAD--PAVEKVRKLLSIPVIGAG-------------------------SSVSALALAYG-RRVG 119 (228)
T ss_dssp HHHHHHTTCSEEEECSTTC--TTHHHHHHHCSSCEEEHH-------------------------HHHHHHHHTTC-SSEE
T ss_pred HHHHHHCCCCEEEEeCCch--HHHHHHHHhCCCCEeCcc-------------------------HHHHHHHHHhC-CeEE
Confidence 3345456888887644444 444455566788888631 11111222356 8899
Q ss_pred EEEEcCCCcchhHHHHHHHH-hccCcEEEEee-----ccCCCCChhHHHHHHHHhhcCCceEEEEeccC
Q 003958 169 AIYVDDDHGRNGIAALGDTL-AAKRCRISFKA-----PLSVEATEDEITDLLVKVALTESRIIVVHTHY 231 (784)
Q Consensus 169 ii~~d~~~g~~~~~~l~~~l-~~~gi~v~~~~-----~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~ 231 (784)
++....... ..+++.+ ++.|..+.... .+........+...++++.+.++|+||+.|..
T Consensus 120 Vlat~~t~~----~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~d~IvLgCT~ 184 (228)
T 2eq5_A 120 VLNLTEETP----KVIRSILGNNLIAEDHPSGVSNTLDLLTDWGRREVINAAKRLKEKGVEVIALGCTG 184 (228)
T ss_dssp EECSSSCCC----HHHHHHHGGGEEEEECCTTCCSGGGGGSHHHHHHHHHHHHHHHHTTCSEEEECCTH
T ss_pred EEecCcccH----HHHHHHHHHHhCccccCCceeeHHHhcChHHHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 998754322 2466777 77776542211 01000012334556666666688999987654
No 194
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=82.28 E-value=11 Score=37.68 Aligned_cols=58 Identities=12% Similarity=0.159 Sum_probs=40.6
Q ss_pred cCCCCChHhhhhCCCceEEeeCchHHHHHHhhcccCccCceeCCCHHHHHHHHhcCCcCCCeeEEEechh
Q 003958 681 SSPIKGIDSLRSSNYPIGYQVNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRA 750 (784)
Q Consensus 681 ~~~i~~~~dl~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~ 750 (784)
..+|++++||+ |++|.+. ++.....++ ..+.. .+ .-...|.+.+|++ |.+|+......
T Consensus 128 ~~pI~s~~Dlk--G~KiR~~-~~~~~~~~~-~lGa~---pv-~~~~~E~y~ALq~----G~vDg~~~~~~ 185 (301)
T 2pfy_A 128 KKPVAALADLK--GTRFRAY-SASTSHMAA-LMGAV---PT-TVQTPEVPQAFST----GVIDAMLTSPA 185 (301)
T ss_dssp SSCCSSGGGGT--TCEEEEC-SHHHHHHHH-HTTSE---EE-ECCGGGHHHHHHT----TSCSBEEECHH
T ss_pred CCCCCCHHHhC--CCEEeec-ChhHHHHHH-HcCCc---ce-eccHHHHHHHHhc----ceeeeEecCcc
Confidence 35899999999 9999987 554455653 34432 12 2366789999999 78888865443
No 195
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=81.48 E-value=0.57 Score=51.08 Aligned_cols=56 Identities=11% Similarity=0.136 Sum_probs=47.4
Q ss_pred cCCceeehhhhhhhhhccc--ccccccchhhHHHHHHHHHHHHHHhhccccceeeEee
Q 003958 622 KRQVVTIFWFSFSTMFFAH--KEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTV 677 (784)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~--~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~ 677 (784)
..++.+++|+++.+++.-| .-.|.+..+|++++++.++++++++.+.|.+.+-+..
T Consensus 373 F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~ 430 (514)
T 2r9r_B 373 FPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNY 430 (514)
T ss_dssp CSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred ccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568899999999998654 5589999999999999999999999999988875543
No 196
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=81.36 E-value=11 Score=37.52 Aligned_cols=59 Identities=12% Similarity=0.135 Sum_probs=41.4
Q ss_pred cCCCCChHhhhhCCCceEEeeCchHHHHHHhhcccCccCceeCCCHHHHHHHHhcCCcCCCeeEEEechhh
Q 003958 681 SSPIKGIDSLRSSNYPIGYQVNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAY 751 (784)
Q Consensus 681 ~~~i~~~~dl~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~ 751 (784)
..+|++++||+ |++|.+. ++.....++ ..+.. .+ .-...|.+.+|++ |.+|+.......
T Consensus 127 ~~pI~s~~Dlk--G~KiR~~-~~~~~~~~~-~lGa~---pv-~~~~~E~y~ALq~----G~vDg~~~~~~~ 185 (301)
T 2pfz_A 127 NRDIKQVSDMK--GLKWRAY-SPVTAKIAE-LVGAQ---PV-TVQQAELAQAMAT----GVIDSYMSSGST 185 (301)
T ss_dssp SSCCSSGGGGT--TCEEEES-SHHHHHHHH-HHTCE---EE-ECCGGGHHHHHHT----TSCSEEEECHHH
T ss_pred CCCCCChHHhc--CCEEecC-ChhHHHHHH-HcCCc---ce-ecCHHHHHHHHhc----CeeeEEecCccc
Confidence 35899999999 9999987 554455663 34432 11 2367899999999 889998665433
No 197
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=81.16 E-value=9.8 Score=36.37 Aligned_cols=90 Identities=11% Similarity=0.011 Sum_probs=50.8
Q ss_pred CCChHhhhhCCCceEEee------CchHHHHHHhhccc---CccCceeCCCHHHHHHHHhcCCcCCCeeEEEechhhhHH
Q 003958 684 IKGIDSLRSSNYPIGYQV------NSFARNYLVDELNI---DESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAEL 754 (784)
Q Consensus 684 i~~~~dl~~~~~~i~~~~------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~ 754 (784)
++++.||.+ +.+|++.. |.+....|++ .+. ...+++...+..+..+.+.+ |+.++.+.-...+..
T Consensus 107 ~~~l~~l~~-~~~iai~~p~~~p~G~~a~~~l~~-~g~~~~l~~~~~~~~~~~~~~~~v~~----Ge~d~gi~~~s~a~~ 180 (237)
T 3r26_A 107 KTNWTSLLN-GGRLAVGDPEHVPAGIYAKEALQK-LGAWDTLSPKLAPAEDVRGALALVER----NEAPLGIVYGSDAVA 180 (237)
T ss_dssp TCCHHHHHT-TCCEEEECTTTCHHHHHHHHHHHH-TTCHHHHGGGEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHH
T ss_pred hHhHHHhcC-CCeEEEeCCCCCChHHHHHHHHHH-cCCHHHhhhcEEecCCHHHHHHHHHc----CCCCEEEEEeccccc
Confidence 355666654 45677754 3345666643 222 11244445677889999999 788776654332211
Q ss_pred HHcCCCCeEE---eCCcc-ccceEEEEeeCCCC
Q 003958 755 FLSTRCEFSI---VGQVF-TKNGWGFVSIVSSF 783 (784)
Q Consensus 755 ~~~~~c~l~~---~~~~~-~~~~~~~~~~k~s~ 783 (784)
. -++.+ +.+.. ....|++++.|+++
T Consensus 181 --~--~~~~~v~~~P~~~~~~~~~~~ai~k~~~ 209 (237)
T 3r26_A 181 --S--KGVKVVATFPEDSHKKVEYPVAVVEGHN 209 (237)
T ss_dssp --C--SSEEEEEECCGGGSCCEEEEEEEBTTCC
T ss_pred --C--CCCeEEEECCcccCCeeeeeEEEEcCCC
Confidence 2 23333 33322 34467889889875
No 198
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=80.95 E-value=3.8 Score=42.84 Aligned_cols=88 Identities=10% Similarity=0.054 Sum_probs=63.7
Q ss_pred HHHHHHHHcCCcEEEEEEEcCCCcc--hhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEecc-
Q 003958 154 AIAEIVDHYGWREVIAIYVDDDHGR--NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH- 230 (784)
Q Consensus 154 ai~~~l~~~~w~~v~ii~~d~~~g~--~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~- 230 (784)
.+.++++.++.+++.||++...... ...+.+.+.+++.|+++.....+..+.+.+.....++.+++.++|.||-.+.
T Consensus 23 ~l~~~l~~~g~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGG 102 (387)
T 3bfj_A 23 VVGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVTVGGG 102 (387)
T ss_dssp GHHHHHHHTTCSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEEEESH
T ss_pred HHHHHHHHcCCCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 4567778888899999987665544 4789999999999988754444554456778888888899999999997644
Q ss_pred -CCcHHHHHHHH
Q 003958 231 -YNRGPVVFHVA 241 (784)
Q Consensus 231 -~~~~~~~~~~a 241 (784)
.-++..++...
T Consensus 103 sv~D~aK~iA~~ 114 (387)
T 3bfj_A 103 SPHDCGKGIGIA 114 (387)
T ss_dssp HHHHHHHHHHHH
T ss_pred chhhHHHHHHHH
Confidence 45555555544
No 199
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=80.64 E-value=20 Score=35.50 Aligned_cols=121 Identities=11% Similarity=-0.008 Sum_probs=76.3
Q ss_pred EEEEEeecCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCchhhHHHH
Q 003958 33 NIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVTSHVV 112 (784)
Q Consensus 33 ~IG~i~~~~~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s~~~~~v 112 (784)
+||.+....... ...|+..++++.| +. +..+.+..+-.++..+.+++.+++++++.+|+...+ ..+..+
T Consensus 128 ~Ig~i~g~~~~~---r~~Gf~~~~~~~~------~~-~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~~D-~~a~Gv 196 (296)
T 2hqb_A 128 KVGVIAAFPWQP---EVEGFVDGAKYMN------ES-EAFVRYVGEWTDADKALELFQELQKEQVDVFYPAGD-GYHVPV 196 (296)
T ss_dssp EEEEEESCTTCH---HHHHHHHHHHHTT------CC-EEEEEECSSSSCHHHHHHHHHHHHTTTCCEEECCCT-TTHHHH
T ss_pred eEEEEcCcCchh---hHHHHHHHHHHhC------CC-eEEEEeeccccCHHHHHHHHHHHHHCCCcEEEECCC-CCCHHH
Confidence 678876553221 5688999998865 23 444444333347788888999999889999987443 344555
Q ss_pred HHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcE
Q 003958 113 SHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWRE 166 (784)
Q Consensus 113 a~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~ 166 (784)
...+...++.+|.+......+ ...|.+..+..+-...+...++.+..-.|+.
T Consensus 197 ~~a~~e~Gv~viG~D~~~~~~--~~~~~LTsv~~~~~~~~~~a~~~~~~g~~~~ 248 (296)
T 2hqb_A 197 VEAIKDQGDFAIGYVGDQADL--GGSTILTSTVQHVDDLYVLVAKRFQEGKLES 248 (296)
T ss_dssp HHHHHHHTCEEEEEESCCSSS--SCSSEEEEEEECHHHHHHHHHHHTTTTCCCC
T ss_pred HHHHHHcCCEEEEEecchhhh--CCCeEEEEEEEEhHHHHHHHHHHHHcCCCCC
Confidence 566677788888876522111 1124555555566666666666666556754
No 200
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=79.37 E-value=9.8 Score=36.17 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=25.1
Q ss_pred HHHHHHHhcCceEEEccCchhhHHHHHHhhhcCCccEEec
Q 003958 87 AEALHLMEGQTVAIIGPQDAVTSHVVSHVANELQVPLLSF 126 (784)
Q Consensus 87 ~~~~~li~~~v~aiiGp~~s~~~~~va~~~~~~~ip~Is~ 126 (784)
+.+..+.+.++.+|+-+.++.+ ..+..+-+..++|++..
T Consensus 65 ~~~~~l~~~g~d~iviaCnTa~-~~~~~l~~~~~iPvi~i 103 (228)
T 1jfl_A 65 WTAKRLEECGADFIIMPCNTAH-AFVEDIRKAIKIPIISM 103 (228)
T ss_dssp HHHHHHHHHTCSEEECSCTGGG-GGHHHHHHHCSSCBCCH
T ss_pred HHHHHHHHcCCCEEEEcCccHH-HHHHHHHHhCCCCEech
Confidence 4455555569999887655554 44555556678888853
No 201
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=78.87 E-value=2.1 Score=44.64 Aligned_cols=90 Identities=8% Similarity=0.030 Sum_probs=65.7
Q ss_pred HHHHHHHHHcCCcEEEEEEEcCCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccC-
Q 003958 153 AAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY- 231 (784)
Q Consensus 153 ~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~- 231 (784)
..+.++++.+|.+++.||++.........+.+.+.|++.|+.+.....+.++...+.....++.+++.++|.||-.+.+
T Consensus 20 ~~l~~~~~~~g~~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 99 (383)
T 3ox4_A 20 EKAIKDLNGSGFKNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVISLGGGS 99 (383)
T ss_dssp HHHHHTTTTSCCCEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHHTCSEEEEEESHH
T ss_pred HHHHHHHHHcCCCEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCCcH
Confidence 4567778889999999999765333336788999999999887554445555677788888888888899998877543
Q ss_pred -CcHHHHHHHHH
Q 003958 232 -NRGPVVFHVAQ 242 (784)
Q Consensus 232 -~~~~~~~~~a~ 242 (784)
-++..++....
T Consensus 100 v~D~aK~ia~~~ 111 (383)
T 3ox4_A 100 PHDCAKAIALVA 111 (383)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 45555555444
No 202
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=78.67 E-value=39 Score=31.07 Aligned_cols=159 Identities=21% Similarity=0.160 Sum_probs=97.8
Q ss_pred eEEEEEEeecCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCchhhHH
Q 003958 31 VVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVTSH 110 (784)
Q Consensus 31 ~i~IG~i~~~~~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s~~~~ 110 (784)
..+|.++.|.. .....++-...+.+ ..+.+.. .+-..++..+.++ .+++.+||.-+.+ +.
T Consensus 4 ~~~I~~iapy~-----~l~~~~~~i~~e~~--------~~i~i~~----~~l~~~v~~a~~~-~~~~dVIISRGgt--a~ 63 (196)
T 2q5c_A 4 SLKIALISQNE-----NLLNLFPKLALEKN--------FIPITKT----ASLTRASKIAFGL-QDEVDAIISRGAT--SD 63 (196)
T ss_dssp CCEEEEEESCH-----HHHHHHHHHHHHHT--------CEEEEEE----CCHHHHHHHHHHH-TTTCSEEEEEHHH--HH
T ss_pred CCcEEEEEccH-----HHHHHHHHHHhhhC--------CceEEEE----CCHHHHHHHHHHh-cCCCeEEEECChH--HH
Confidence 35778888863 33333443444432 2344332 3467788889998 8899999964322 23
Q ss_pred HHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCCCcchhHHHHHHHHhc
Q 003958 111 VVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAA 190 (784)
Q Consensus 111 ~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~ 190 (784)
.+ -+..++|+|.... +..+..+++.+.-+ ++ ++|+++...+.. ...+.+.+.+
T Consensus 64 ~l---r~~~~iPVV~I~~------------------s~~Dil~al~~a~~-~~-~kIavvg~~~~~--~~~~~~~~ll-- 116 (196)
T 2q5c_A 64 YI---KKSVSIPSISIKV------------------TRFDTMRAVYNAKR-FG-NELALIAYKHSI--VDKHEIEAML-- 116 (196)
T ss_dssp HH---HTTCSSCEEEECC------------------CHHHHHHHHHHHGG-GC-SEEEEEEESSCS--SCHHHHHHHH--
T ss_pred HH---HHhCCCCEEEEcC------------------CHhHHHHHHHHHHh-hC-CcEEEEeCcchh--hHHHHHHHHh--
Confidence 32 2446899997522 23445566666544 43 489999865432 2355666655
Q ss_pred cCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHHHHcCCC
Q 003958 191 KRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQYLGML 247 (784)
Q Consensus 191 ~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a~~~g~~ 247 (784)
|+++... .+. +..+....++++++.+.++||-.. ...+.|++.|+.
T Consensus 117 -~~~i~~~-~~~---~~~e~~~~i~~l~~~G~~vvVG~~------~~~~~A~~~Gl~ 162 (196)
T 2q5c_A 117 -GVKIKEF-LFS---SEDEITTLISKVKTENIKIVVSGK------TVTDEAIKQGLY 162 (196)
T ss_dssp -TCEEEEE-EEC---SGGGHHHHHHHHHHTTCCEEEECH------HHHHHHHHTTCE
T ss_pred -CCceEEE-EeC---CHHHHHHHHHHHHHCCCeEEECCH------HHHHHHHHcCCc
Confidence 4455432 232 567888999999999999987753 245678888874
No 203
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=78.20 E-value=15 Score=37.89 Aligned_cols=59 Identities=14% Similarity=0.132 Sum_probs=41.0
Q ss_pred cCCCCChHhhhhCCCceEEeeCchHHHHHHhhcccCccCceeCCCHHHHHHHHhcCCcCCCeeEEEechhhh
Q 003958 681 SSPIKGIDSLRSSNYPIGYQVNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYA 752 (784)
Q Consensus 681 ~~~i~~~~dl~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~ 752 (784)
..+|++++||+ |++|.+. +. ....++ ..+..+. .-...|.+.+|++ |.+|+.....+..
T Consensus 162 ~~pI~s~~DLk--G~KiR~~-~~-~~~~~~-~lGa~pv----~~~~~e~y~ALq~----G~VDg~~~~~p~~ 220 (365)
T 2hzl_A 162 RREINTVADMQ--GLKMRVG-GF-AGKVME-RLGVVPQ----QIAGGDIYPALEK----GTIDATEWVGPYD 220 (365)
T ss_dssp SSCCCSTGGGT--TCEEECC-TT-HHHHHH-TTTCEEE----CCCTTSHHHHHHH----TSCSEECCSCHHH
T ss_pred cCCCCChHHhC--CCEEecC-Cc-HHHHHH-HcCCcce----ecCHHHHHHHHhC----CCcceeeccCccc
Confidence 46899999999 9999888 53 455663 3443221 2345688899999 8899987654544
No 204
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=77.78 E-value=0.74 Score=45.22 Aligned_cols=66 Identities=11% Similarity=0.137 Sum_probs=49.4
Q ss_pred Cceeehhhhhhhhhccc--ccccccch-------hhHHHHHHHHHHHHHHhhccccceeeEeeccccCCCCChHh
Q 003958 624 QVVTIFWFSFSTMFFAH--KEKTVSAL-------GRLVLIIWLFVVLIINSSYTASLTSILTVQKLSSPIKGIDS 689 (784)
Q Consensus 624 ~~~~~~~~~~~~~~~~~--~~~p~~~~-------~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~~~i~~~~d 689 (784)
++.+++|+++.++..-| +-.|.+.. +|++..+|.++++.+++...+.++..+...+....+...+|
T Consensus 201 s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~l~~~~~~~~~ 275 (280)
T 3ukm_A 201 NFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKKFRKMFYVKKD 275 (280)
T ss_dssp CHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHTTC----
T ss_pred chhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 57899999999987654 44676664 59999999999999999999999888776665544443333
No 205
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=76.55 E-value=19 Score=28.57 Aligned_cols=96 Identities=14% Similarity=0.194 Sum_probs=63.0
Q ss_pred EeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhc--
Q 003958 142 VRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL-- 219 (784)
Q Consensus 142 ~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~-- 219 (784)
|-...++...-..++.-+++.| -++.++|+|.+- ....+.+ +.++++|+.+-.. .+..|++.-+.+|-.
T Consensus 5 fvvfssdpeilkeivreikrqg-vrvvllysdqde-krrrerl-eefekqgvdvrtv------edkedfrenireiwery 75 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQG-VRVVLLYSDQDE-KRRRERL-EEFEKQGVDVRTV------EDKEDFRENIREIWERY 75 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTT-CEEEEEECCSCH-HHHHHHH-HHHHTTTCEEEEC------CSHHHHHHHHHHHHHHC
T ss_pred EEEecCCHHHHHHHHHHHHhCC-eEEEEEecCchH-HHHHHHH-HHHHHcCCceeee------ccHHHHHHHHHHHHHhC
Confidence 4444556666677777777777 467788877652 2223333 4577889886543 256778777777633
Q ss_pred CCceEEEEeccC--CcHHHHHHHHHHcCC
Q 003958 220 TESRIIVVHTHY--NRGPVVFHVAQYLGM 246 (784)
Q Consensus 220 ~~~~vIvl~~~~--~~~~~~~~~a~~~g~ 246 (784)
.+-+++++.... +.+..|+.+|.+.|.
T Consensus 76 pqldvvvivttddkewikdfieeakergv 104 (162)
T 2l82_A 76 PQLDVVVIVTTDDKEWIKDFIEEAKERGV 104 (162)
T ss_dssp TTCCEEEEEECCCHHHHHHHHHHHHHTTC
T ss_pred CCCcEEEEEecCcHHHHHHHHHHHHhcCc
Confidence 466777766443 568899999999885
No 206
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=76.54 E-value=19 Score=34.70 Aligned_cols=91 Identities=15% Similarity=0.076 Sum_probs=50.6
Q ss_pred CCCC--hHhhhhCCCceEEee------CchHHHHHHhhccc---CccCceeCCCHHHHHHHHhcCCcCCCeeEEEechhh
Q 003958 683 PIKG--IDSLRSSNYPIGYQV------NSFARNYLVDELNI---DESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAY 751 (784)
Q Consensus 683 ~i~~--~~dl~~~~~~i~~~~------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~ 751 (784)
.|++ +.|+...+.+|++.+ |.+....|++ .+. ...+++...+..+....+.+ |+.++.+.-...
T Consensus 119 ~i~~~dl~~l~~~~~~iai~dP~~~p~G~~a~~~l~~-~g~~~~l~~~~v~~~~~~~~~~~v~~----Gead~giv~~s~ 193 (253)
T 3gzg_A 119 PRAPGAIAKALGENGRLAVGQTASVPAGSYAAAALRK-LGQWDSVSNRLAESESVRAALMLVSR----GEAPLGIVYGSD 193 (253)
T ss_dssp TTSTTHHHHHTTTTCCEEEECTTTSHHHHHHHHHHHH-TTCHHHHTTSEEEESSHHHHHHHHHT----TSSSEEEEEHHH
T ss_pred CCCHHHHHHhhcCCCEEEEeCCCCCchHHHHHHHHHH-cCcHHHHhhceeecCCHHHHHHHHHc----CCCCEEEEEhhc
Confidence 4666 444433345788764 3345566643 221 12345555778888999998 788776654332
Q ss_pred hHHHHcCCCCeEEe---CCc-cccceEEEEeeCCC
Q 003958 752 AELFLSTRCEFSIV---GQV-FTKNGWGFVSIVSS 782 (784)
Q Consensus 752 ~~~~~~~~c~l~~~---~~~-~~~~~~~~~~~k~s 782 (784)
+. . .-++.++ .+. .....|++++.|++
T Consensus 194 a~--~--~~~v~~v~~~P~~~~~~i~~~~ai~k~~ 224 (253)
T 3gzg_A 194 AR--A--DAKVRVVATFPDDSHDAIVYPVAALKNS 224 (253)
T ss_dssp HH--H--CTTEEEEEECCGGGSCCEEEEEEECTTC
T ss_pred cc--c--CCCceEEEECCcccCceeEEEEEEECCC
Confidence 22 1 2234443 332 23446788888875
No 207
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=76.05 E-value=7.2 Score=36.57 Aligned_cols=71 Identities=14% Similarity=-0.000 Sum_probs=42.0
Q ss_pred eeHHHHHHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCc-ccEEEeeEEeecCc---cccce--eccccccccEE
Q 003958 495 FCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGV-YDAAVGDIAIITNR---TKMAD--FTQPYIESGLV 568 (784)
Q Consensus 495 ~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~-~D~~~~~~~~t~~r---~~~~~--fs~p~~~~~~~ 568 (784)
+.-++++.+.++-|.++++.. +.-..++..+.+|+ +|+++..-....++ ...+. -..|+....+.
T Consensus 13 ~l~~~~~~F~~~p~i~v~~~~---------~~s~~l~~~l~~g~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 83 (231)
T 1atg_A 13 TLEQLAGQFAKQTGHAVVISS---------GSSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQGFALPGSRFTYAIGKLV 83 (231)
T ss_dssp HHHHHHHHHHHHHCCCEEEEE---------ECHHHHHHHHHTTCCCSEEECSSSHHHHHHHHTTCBCTTCCEEEEECCEE
T ss_pred HHHHHHHHHHhccCCeEEEEE---------CCcHHHHHHHHcCCCCCEEEeCChhHHHHHHhcCCCcCCceeEeeeeeEE
Confidence 344667777777677744432 34568899999998 99986532111111 11111 13567777777
Q ss_pred EEEecc
Q 003958 569 VVAPVR 574 (784)
Q Consensus 569 ~~~~~~ 574 (784)
+++++.
T Consensus 84 lv~~~~ 89 (231)
T 1atg_A 84 LWSAKP 89 (231)
T ss_dssp EEESST
T ss_pred EEEcCC
Confidence 777654
No 208
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=73.63 E-value=58 Score=30.23 Aligned_cols=69 Identities=12% Similarity=0.186 Sum_probs=45.2
Q ss_pred eeeHHHHHHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeEEeecCccccceeccccccccEEEEEec
Q 003958 494 GFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIITNRTKMADFTQPYIESGLVVVAPV 573 (784)
Q Consensus 494 G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~ 573 (784)
.+...++..+.++.- .+++++.. +....++..|.+|++|+++..... ....+. +.++....++++++.
T Consensus 43 ~~l~~~l~~f~~~~P-~v~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~~~~---~~~~l~-~~~l~~~~~~~v~~~ 110 (238)
T 2hxr_A 43 YFIGPLMADFYARYP-SITLQLQE-------MSQEKIEDMLCRDELDVGIAFAPV---HSPELE-AIPLLTESLALVVAQ 110 (238)
T ss_dssp TTHHHHHHHHHHHCT-TSCEEEEE-------CCHHHHHHHHHTTSCSEEEEESSC---CCTTEE-EEEEEEEEEEEEEET
T ss_pred HHHHHHHHHHHHhCC-CcEEEEEE-------CCHHHHHHHHHcCCCcEEEEcCCC---Ccccce-eeeeccCcEEEEEcC
Confidence 456677888888773 23355543 356788999999999999864221 122232 356777888888865
Q ss_pred c
Q 003958 574 R 574 (784)
Q Consensus 574 ~ 574 (784)
.
T Consensus 111 ~ 111 (238)
T 2hxr_A 111 H 111 (238)
T ss_dssp T
T ss_pred C
Confidence 5
No 209
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=72.29 E-value=7.5 Score=40.82 Aligned_cols=88 Identities=9% Similarity=0.063 Sum_probs=61.3
Q ss_pred HHHHHHHHcCCcEEEEEEEcCCCcc-hhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEecc--
Q 003958 154 AIAEIVDHYGWREVIAIYVDDDHGR-NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH-- 230 (784)
Q Consensus 154 ai~~~l~~~~w~~v~ii~~d~~~g~-~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~-- 230 (784)
.+.++++.++.+++.||+++..... ...+.+.+.+++.|+.+.......++++.+.....++.+++.++|+||-.+.
T Consensus 33 ~l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 112 (407)
T 1vlj_A 33 KIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGGGS 112 (407)
T ss_dssp GHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEESHH
T ss_pred HHHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcCCCEEEEeCChh
Confidence 4566778888899999986443333 3578888999888987754333443456677888888889999999997644
Q ss_pred CCcHHHHHHHH
Q 003958 231 YNRGPVVFHVA 241 (784)
Q Consensus 231 ~~~~~~~~~~a 241 (784)
.-++..++...
T Consensus 113 viD~AK~iA~~ 123 (407)
T 1vlj_A 113 VVDSAKAVAAG 123 (407)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34555555443
No 210
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=72.16 E-value=23 Score=33.45 Aligned_cols=76 Identities=21% Similarity=0.206 Sum_probs=43.9
Q ss_pred HHhcCceEEEccCchhhHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEEEE
Q 003958 92 LMEGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIY 171 (784)
Q Consensus 92 li~~~v~aiiGp~~s~~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~ 171 (784)
+.+.++.+|+-+.++.... +..+-+..++|++.. .++.++-+...+-++|+++.
T Consensus 69 L~~~g~d~iviaCnTa~~~-~~~l~~~~~iPvi~i-------------------------~~a~~~~~~~~~~~rigvla 122 (226)
T 2zsk_A 69 LERAGAELIAFAANTPHLV-FDDVQREVNVPMVSI-------------------------IDAVAEEILKRGVRKVLLLG 122 (226)
T ss_dssp HHHHTCSEEEESSSGGGGG-HHHHHHHCSSCBCCH-------------------------HHHHHHHHHHTTCCEEEEES
T ss_pred HHHcCCCEEEECCCcHHHH-HHHHHHhCCCCEecc-------------------------HHHHHHHHHHcCCCeEEEEe
Confidence 3344888887655555432 344555668887753 13344444445678899987
Q ss_pred EcCCCcchhHHHHHHHHhccCcEEE
Q 003958 172 VDDDHGRNGIAALGDTLAAKRCRIS 196 (784)
Q Consensus 172 ~d~~~g~~~~~~l~~~l~~~gi~v~ 196 (784)
+...-. ...+++.+++.|+.+.
T Consensus 123 T~~T~~---~~~y~~~l~~~g~~v~ 144 (226)
T 2zsk_A 123 TKTTMT---ADFYIKTLEEKGLEVV 144 (226)
T ss_dssp STTTTS---CHHHHHHHHTTTCEEE
T ss_pred CHHHHh---hhHHHHHHHHCCCEEE
Confidence 533222 1245666677787654
No 211
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=71.98 E-value=4.2 Score=42.48 Aligned_cols=89 Identities=9% Similarity=0.041 Sum_probs=63.6
Q ss_pred HHHHHHHHcCCcEEEEEEEcCCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEecc--C
Q 003958 154 AIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH--Y 231 (784)
Q Consensus 154 ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~--~ 231 (784)
.+.++++.++.+++.+|++.........+.+.+.+++.|+.+.....+..+.+.+.....++.+++.++|+||-.+. .
T Consensus 21 ~l~~~l~~~g~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGsv 100 (386)
T 1rrm_A 21 ALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGGGSP 100 (386)
T ss_dssp GHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEEEESHHH
T ss_pred HHHHHHHHcCCCEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCChHH
Confidence 35667777888999999865433334688899999888988764444555556778888888888889999997644 4
Q ss_pred CcHHHHHHHHH
Q 003958 232 NRGPVVFHVAQ 242 (784)
Q Consensus 232 ~~~~~~~~~a~ 242 (784)
-++..++....
T Consensus 101 ~D~aK~iA~~~ 111 (386)
T 1rrm_A 101 QDTCKAIGIIS 111 (386)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55666665544
No 212
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=71.26 E-value=64 Score=29.75 Aligned_cols=71 Identities=18% Similarity=0.207 Sum_probs=45.6
Q ss_pred eeeeHHHHHHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeEEeecCccccceeccccccccEEEEEe
Q 003958 493 SGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIITNRTKMADFTQPYIESGLVVVAP 572 (784)
Q Consensus 493 ~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~ 572 (784)
..+..+++..+.++.- .+++++.. +....++..|.+|++|+++.... ......+. ..++....+.++++
T Consensus 26 ~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~~~--~~~~~~l~-~~~l~~~~~~~v~~ 94 (228)
T 2fyi_A 26 RYSLPEVIKAFRELFP-EVRLELIQ-------GTPQEIATLLQNGEADIGIASER--LSNDPQLV-AFPWFRWHHSLLVP 94 (228)
T ss_dssp HHTHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEESSS--STTCTTEE-EEEEEEECEEEEEE
T ss_pred HHHHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCccEEEEecc--cCCCCCce-EEEeeecceEEEec
Confidence 3456678888888773 33355543 45778999999999999985311 11112232 35677778888876
Q ss_pred cc
Q 003958 573 VR 574 (784)
Q Consensus 573 ~~ 574 (784)
..
T Consensus 95 ~~ 96 (228)
T 2fyi_A 95 HD 96 (228)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 213
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=71.17 E-value=35 Score=33.48 Aligned_cols=81 Identities=15% Similarity=0.127 Sum_probs=49.2
Q ss_pred ccEEEEecCCCccceeEeeCCCcceeeeeHHHHHHHHHHC-CCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeE
Q 003958 468 RHLRIGVPNRVSFREFVSVKGSEMTSGFCIDVFTAAINLL-PYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 546 (784)
Q Consensus 468 ~~l~v~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~l~~~l-~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~ 546 (784)
++|+|++... + ...+..+++..+.+.. +.+ +++.. +....++..|.+|++|+++..-
T Consensus 95 g~l~i~~~~~--~-----------~~~~l~~~l~~f~~~~P~i~--i~l~~-------~~~~~~~~~l~~g~~Dl~i~~~ 152 (306)
T 3fzv_A 95 GQIDIGCFET--V-----------APLYLPGLIAGFRQAYPGVE--IRIRD-------GEQQELVQGLTSGRFDLAFLYE 152 (306)
T ss_dssp EEEEEEEEGG--G-----------HHHHHHHHHHHHHHHCTTEE--EEEEE-------ECHHHHHHHHHHTSCSEEEECS
T ss_pred ceEEEEechh--h-----------hHHHHHHHHHHHHHHCCCeE--EEEEe-------CCHHHHHHHHHCCCccEEEEec
Confidence 5677777542 1 2345567788888776 444 44443 3577889999999999998532
Q ss_pred EeecCccccceeccccc-cccEEEEEecc
Q 003958 547 AIITNRTKMADFTQPYI-ESGLVVVAPVR 574 (784)
Q Consensus 547 ~~t~~r~~~~~fs~p~~-~~~~~~~~~~~ 574 (784)
. .....+ -..++. ...+.++++..
T Consensus 153 ~---~~~~~l-~~~~l~~~~~~~~v~~~~ 177 (306)
T 3fzv_A 153 H---DLDSTI-ETEPLMPPQRPHALLPEG 177 (306)
T ss_dssp S---SCCTTE-EEEESSCCBCCEEEEETT
T ss_pred c---cccccc-ceeeeeeccccEEEecCC
Confidence 2 122222 234455 56666666554
No 214
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=70.64 E-value=17 Score=36.21 Aligned_cols=79 Identities=8% Similarity=0.027 Sum_probs=58.7
Q ss_pred cEEEEEEEc--CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccC-CcHHHHHHHH
Q 003958 165 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY-NRGPVVFHVA 241 (784)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~-~~~~~~~~~a 241 (784)
++|+++..+ +.|.....+.+++.+++.|..+..... . .+.......++.+...+.+.||+.... ......++++
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSA-N--GNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEA 79 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEEC-T--TCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECC-C--CCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHH
Confidence 578888864 678888999999999999988775432 1 344555677888888899999987544 4446788888
Q ss_pred HHcCC
Q 003958 242 QYLGM 246 (784)
Q Consensus 242 ~~~g~ 246 (784)
.+.|.
T Consensus 80 ~~~~i 84 (313)
T 3m9w_A 80 KQEGI 84 (313)
T ss_dssp HTTTC
T ss_pred HHCCC
Confidence 77664
No 215
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=69.05 E-value=5.4 Score=41.53 Aligned_cols=74 Identities=15% Similarity=0.103 Sum_probs=49.8
Q ss_pred HHHHHHHHcCCcEEEEEEEcCCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccC
Q 003958 154 AIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY 231 (784)
Q Consensus 154 ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~ 231 (784)
.+.++++.++ +++.||++...+. ...+.+.+.+++ |+.+.+ ..+..+...++....++.+++.++|+||-.+.+
T Consensus 43 ~l~~~l~~~g-~r~liVtd~~~~~-~~~~~v~~~L~~-g~~~~~-~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGG 116 (387)
T 3uhj_A 43 KLAAYLAPLG-KRALVLIDRVLFD-ALSERIGKSCGD-SLDIRF-ERFGGECCTSEIERVRKVAIEHGSDILVGVGGG 116 (387)
T ss_dssp TTHHHHGGGC-SEEEEEECTTTHH-HHHHHC-------CCEEEE-EECCSSCSHHHHHHHHHHHHHHTCSEEEEESSH
T ss_pred HHHHHHHHcC-CEEEEEECchHHH-HHHHHHHHHHHc-CCCeEE-EEcCCCCCHHHHHHHHHHHhhcCCCEEEEeCCc
Confidence 4567788888 9999998665543 367788888888 988743 345545567778888888888899998877543
No 216
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=68.61 E-value=11 Score=39.03 Aligned_cols=87 Identities=9% Similarity=0.067 Sum_probs=61.6
Q ss_pred HHHHHHHHcCCcEEEEEEEcCCCcc-hhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEecc--
Q 003958 154 AIAEIVDHYGWREVIAIYVDDDHGR-NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH-- 230 (784)
Q Consensus 154 ai~~~l~~~~w~~v~ii~~d~~~g~-~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~-- 230 (784)
.+.++++.++ +++.+|++...... ...+.+.+.+++.|+++.....+..+.+.+.....++.+++.++|+||-.+.
T Consensus 31 ~l~~~l~~~g-~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs 109 (371)
T 1o2d_A 31 KRGNIIDLLG-KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGLGGGS 109 (371)
T ss_dssp HHGGGGGGTC-SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEESHH
T ss_pred HHHHHHHHcC-CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhcCCCEEEEeCChH
Confidence 4556677778 99999997644433 3578899999888987654444554556778888888899889999997644
Q ss_pred CCcHHHHHHHH
Q 003958 231 YNRGPVVFHVA 241 (784)
Q Consensus 231 ~~~~~~~~~~a 241 (784)
.-++..++...
T Consensus 110 v~D~AK~iA~~ 120 (371)
T 1o2d_A 110 PMDFAKAVAVL 120 (371)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34555555444
No 217
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=66.19 E-value=30 Score=31.99 Aligned_cols=69 Identities=13% Similarity=0.073 Sum_probs=47.0
Q ss_pred eeeHHHHHHHHHHC-CCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeEEeecCccccceeccccccccEEEEEe
Q 003958 494 GFCIDVFTAAINLL-PYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIITNRTKMADFTQPYIESGLVVVAP 572 (784)
Q Consensus 494 G~~~dl~~~l~~~l-~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~ 572 (784)
.+...++..+.++. +.+ +++.. +....+++.|.+|++|+++... +.....+.+ .|+....+.++++
T Consensus 21 ~~lp~~l~~f~~~~P~v~--l~l~~-------~~~~~l~~~L~~g~iDl~i~~~---~~~~~~l~~-~~l~~~~~~~v~~ 87 (218)
T 2y7p_A 21 YFMPPLMEALAQRAPHIQ--ISTLR-------PNAGNLKEDMESGAVDLALGLL---PELQTGFFQ-RRLFRHRYVCMFR 87 (218)
T ss_dssp HHHHHHHHHHHHHCTTCE--EEEEC-------CCTTTHHHHHHHTSSCEEEECC---TTCCTTEEE-EEEEEECEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCE--EEEEe-------CCcccHHHHHhCCCceEEEecC---CCCCcceeE-EEeeeccEEEEEc
Confidence 45667888888776 444 55543 3467899999999999998532 222223443 5788888888887
Q ss_pred ccC
Q 003958 573 VRK 575 (784)
Q Consensus 573 ~~~ 575 (784)
...
T Consensus 88 ~~h 90 (218)
T 2y7p_A 88 KDH 90 (218)
T ss_dssp TTC
T ss_pred CCC
Confidence 653
No 218
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=66.12 E-value=23 Score=35.68 Aligned_cols=88 Identities=5% Similarity=-0.065 Sum_probs=56.3
Q ss_pred HHHHHHHcCCcEEEEEEEc----CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEecc
Q 003958 155 IAEIVDHYGWREVIAIYVD----DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH 230 (784)
Q Consensus 155 i~~~l~~~~w~~v~ii~~d----~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~ 230 (784)
.++-|+.-.-+.|+++..+ +.|.....+.+++.+++.|..+.....- .+.......++.+...+.|.||+...
T Consensus 52 ~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiIi~~~ 128 (338)
T 3dbi_A 52 LARNLSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGK---HSAEEERQAIQYLLDLRCDAIMIYPR 128 (338)
T ss_dssp --------CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEECT---TSHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred HHHHhhhCCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeCC---CChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 3344444556789999876 4566677889999999999887654321 23444456777787889999999765
Q ss_pred CCcHHHHHHHHHHcC
Q 003958 231 YNRGPVVFHVAQYLG 245 (784)
Q Consensus 231 ~~~~~~~~~~a~~~g 245 (784)
......+.+.+.+.+
T Consensus 129 ~~~~~~~~~~~~~~~ 143 (338)
T 3dbi_A 129 FLSVDEIDDIIDAHS 143 (338)
T ss_dssp SSCHHHHHHHHHHCS
T ss_pred CCChHHHHHHHHcCC
Confidence 544455666666655
No 219
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=65.62 E-value=25 Score=31.64 Aligned_cols=65 Identities=11% Similarity=0.112 Sum_probs=48.9
Q ss_pred CcEEEEEEEcCCCcc---hhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcC-CceEEEEecc
Q 003958 164 WREVIAIYVDDDHGR---NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT-ESRIIVVHTH 230 (784)
Q Consensus 164 w~~v~ii~~d~~~g~---~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~-~~~vIvl~~~ 230 (784)
--+++||...|+-|+ .....+.+.+++.|+.+.....++ .+..++...+++..+. ++|+||..+.
T Consensus 10 ~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~--Dd~~~i~~~l~~a~~~~~~DlVittGG 78 (172)
T 1mkz_A 10 PTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVK--ENRYAIRAQVSAWIASDDVQVVLITGG 78 (172)
T ss_dssp CCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEEC--SCHHHHHHHHHHHHHSSSCCEEEEESC
T ss_pred CCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeC--CCHHHHHHHHHHHHhcCCCCEEEeCCC
Confidence 358899988777664 335678888999999988777777 4567788888877654 6899998743
No 220
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=65.61 E-value=2 Score=42.80 Aligned_cols=55 Identities=18% Similarity=0.186 Sum_probs=47.7
Q ss_pred cCCceeehhhhhhhhhcc--cccccccchhhHHHHHHHHHHHHHHhhccccceeeEe
Q 003958 622 KRQVVTIFWFSFSTMFFA--HKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILT 676 (784)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~--~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~ 676 (784)
..++.+++|+++.++..- |.-.|.+..+|++++++.++++.+.....+.+...+.
T Consensus 113 ~w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~ 169 (309)
T 3um7_A 113 AWDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLG 169 (309)
T ss_dssp CCSHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346889999999998755 5668999999999999999999999999998888774
No 221
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=64.67 E-value=17 Score=35.93 Aligned_cols=80 Identities=11% Similarity=0.078 Sum_probs=57.1
Q ss_pred cEEEEEEEc--CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEecc-CCcHHHHHHHH
Q 003958 165 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH-YNRGPVVFHVA 241 (784)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~-~~~~~~~~~~a 241 (784)
++|++|..+ +.|.....+.+++.+++.|..+.....- ..+.......++.+...+.+.||+... .......++++
T Consensus 5 ~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 82 (305)
T 3g1w_A 5 ETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGAA--QYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTINKA 82 (305)
T ss_dssp CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEECS--SSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHHHH
T ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeCCC--cCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHH
Confidence 578888854 5677788899999999999888753211 134455667777777788999988754 34456778888
Q ss_pred HHcCC
Q 003958 242 QYLGM 246 (784)
Q Consensus 242 ~~~g~ 246 (784)
.+.|.
T Consensus 83 ~~~~i 87 (305)
T 3g1w_A 83 VDAGI 87 (305)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 87664
No 222
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=64.62 E-value=96 Score=29.39 Aligned_cols=74 Identities=12% Similarity=0.103 Sum_probs=49.2
Q ss_pred eeeeHHHHHHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeEEeecCcc---ccceeccccccccEEE
Q 003958 493 SGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIITNRT---KMADFTQPYIESGLVV 569 (784)
Q Consensus 493 ~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~~~t~~r~---~~~~fs~p~~~~~~~~ 569 (784)
.|+.-+|+..+.++.+.++.+.+ +.-..++..+.+|.+|+++..-....+.. ....-..|+....+++
T Consensus 18 ~~ll~~L~~~Fek~~gv~V~~~~---------~gSg~ll~qi~~G~aDv~isa~~~~~~~l~~~g~~~~~~~~a~N~lVl 88 (237)
T 3muq_A 18 SGLLDYLLPQFEKDTGYKVDVIA---------AGTGKALKMGENGDVDLVMTHAPKAEGTFVEKGYGVLPRKLMYNDFVI 88 (237)
T ss_dssp HTHHHHHHHHHHHHHCCEEEEEE---------ECHHHHHHHHHTTSSSEEEECCHHHHHHHHHTTSEEEEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHHhCceEEEEE---------cChHHHHHHHhcCCCCEEEecCchhHHHHHhcCCccccEEEEeCCEEE
Confidence 46677888889888887755444 33456789999999999876543322221 1111246788888888
Q ss_pred EEeccC
Q 003958 570 VAPVRK 575 (784)
Q Consensus 570 ~~~~~~ 575 (784)
++|...
T Consensus 89 V~P~~~ 94 (237)
T 3muq_A 89 VGPKAD 94 (237)
T ss_dssp EECTTC
T ss_pred EEeCCC
Confidence 887654
No 223
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=64.54 E-value=58 Score=31.91 Aligned_cols=69 Identities=17% Similarity=0.185 Sum_probs=42.4
Q ss_pred eeeHHHHHHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEee---EEeecCccccceeccccccccEEEE
Q 003958 494 GFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGD---IAIITNRTKMADFTQPYIESGLVVV 570 (784)
Q Consensus 494 G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~---~~~t~~r~~~~~fs~p~~~~~~~~~ 570 (784)
.+..+++..+.+... .+++++.. +....++..|.+|++|+++.. .... ...+ -..++....++++
T Consensus 114 ~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~~~~~l~~g~~Dl~i~~~~~~~~~---~~~l-~~~~l~~~~~~~v 181 (310)
T 2esn_A 114 ALLPPLMNRLQHSAP-GVRLRLVN-------AERKLSVEALASGRIDFALGYDEEHERL---PEGI-QAHDWFADRYVVV 181 (310)
T ss_dssp HHHHHHHHHHHHHST-TCEEEEEC-------CSSSCCHHHHHHTSSSEEEECCSTTCCC---CTTE-EEEEEEEECEEEE
T ss_pred HHHHHHHHHHHHHCC-CeEEEEEe-------CCcccHHHHHHcCCCCEEEecCcccccC---CcCc-ceeeeeccceEEE
Confidence 455677777877763 33355543 234467888999999999864 2211 1222 2346777778888
Q ss_pred Eecc
Q 003958 571 APVR 574 (784)
Q Consensus 571 ~~~~ 574 (784)
++..
T Consensus 182 ~~~~ 185 (310)
T 2esn_A 182 ARRD 185 (310)
T ss_dssp EESS
T ss_pred EeCC
Confidence 7654
No 224
>2xxp_A CPS2A; replication, peptidoglycan, LCP, LYTR; HET: DSL PEG; 1.69A {Streptococcus pneumoniae} PDB: 3tep_A* 3tfl_A* 2xxq_A* 3tel_A* 4de8_A*
Probab=63.67 E-value=9.6 Score=39.69 Aligned_cols=69 Identities=16% Similarity=0.106 Sum_probs=52.6
Q ss_pred cCCCCChHhhhhCCCceEEeeCchHHHHHHhhc------ccCccCceeCCCHHHHHHHHhcCCcCCCeeEEEechhhhHH
Q 003958 681 SSPIKGIDSLRSSNYPIGYQVNSFARNYLVDEL------NIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAEL 754 (784)
Q Consensus 681 ~~~i~~~~dl~~~~~~i~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~ 754 (784)
..+|++++||+ + ||++.++..+.+..... +. ...+..|++..+++.+|.+ |+++|.+.+..+...
T Consensus 25 ds~i~sl~DLk--g--vgv~~~~~~~~~~~~~~~i~~~~g~-~~~~~~y~~~~~a~~aL~n----G~vDAiv~~~~~~~~ 95 (398)
T 2xxp_A 25 DSEIENVTQLT--S--VTAPTGTDNENIQKLLADIKSSQNT-DLTVNQSSSYLAAYKSLIA----GETKAIVLNSVFENI 95 (398)
T ss_dssp TCSCCSGGGCS--E--EEECTTTSHHHHHHHHHHHHHHSCC-CCEEEECSSHHHHHHHHHT----TSCSCEEEEHHHHHH
T ss_pred CCCcCCHHHhc--C--eeeECCCCHHHHHHHHHHHHHhhCC-cceEEecCCHHHHHHHHHc----CCCCEEEEchHHHHH
Confidence 36899999998 5 99998887666653322 11 1346789999999999999 899999999877666
Q ss_pred HHcC
Q 003958 755 FLST 758 (784)
Q Consensus 755 ~~~~ 758 (784)
+...
T Consensus 96 le~~ 99 (398)
T 2xxp_A 96 IELE 99 (398)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 5443
No 225
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=62.95 E-value=1e+02 Score=28.95 Aligned_cols=134 Identities=13% Similarity=0.153 Sum_probs=83.5
Q ss_pred EEEEecCCCCHHHHHHHHHHHHhc-CceEEEccCchhhHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHH
Q 003958 72 KLQMQDCNHSGFLALAEALHLMEG-QTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQY 150 (784)
Q Consensus 72 ~~~~~D~~~~~~~a~~~~~~li~~-~v~aiiGp~~s~~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~ 150 (784)
++.+.+ .+-..++..+.+++.+ ++.+||.-+.+ +..+ -+..++|+|.... +..+
T Consensus 40 ~I~vi~--~~le~av~~a~~~~~~~~~dVIISRGgt--a~~L---r~~~~iPVV~I~v------------------s~~D 94 (225)
T 2pju_A 40 NITPIQ--LGFEKAVTYIRKKLANERCDAIIAAGSN--GAYL---KSRLSVPVILIKP------------------SGYD 94 (225)
T ss_dssp EEEEEC--CCHHHHHHHHHHHTTTSCCSEEEEEHHH--HHHH---HTTCSSCEEEECC------------------CHHH
T ss_pred eEEEec--CcHHHHHHHHHHHHhcCCCeEEEeCChH--HHHH---HhhCCCCEEEecC------------------CHHH
Confidence 344444 3456778888887765 69999964322 2322 2446899997522 2334
Q ss_pred HHHHHHHHHHHcCCcEEEEEEEcCCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEecc
Q 003958 151 QMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH 230 (784)
Q Consensus 151 ~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~ 230 (784)
..+++.+.-+ ++ ++|++|...+.. ...+.+.+.+ |+++... .+ .+..+....++++++.+.++||-..
T Consensus 95 il~aL~~a~~-~~-~kIavVg~~~~~--~~~~~i~~ll---~~~i~~~-~~---~~~ee~~~~i~~l~~~G~~vVVG~~- 162 (225)
T 2pju_A 95 VLQFLAKAGK-LT-SSIGVVTYQETI--PALVAFQKTF---NLRLDQR-SY---ITEEDARGQINELKANGTEAVVGAG- 162 (225)
T ss_dssp HHHHHHHTTC-TT-SCEEEEEESSCC--HHHHHHHHHH---TCCEEEE-EE---SSHHHHHHHHHHHHHTTCCEEEESH-
T ss_pred HHHHHHHHHh-hC-CcEEEEeCchhh--hHHHHHHHHh---CCceEEE-Ee---CCHHHHHHHHHHHHHCCCCEEECCH-
Confidence 4555555543 33 589999865542 2345566555 4444432 23 2677899999999999999987743
Q ss_pred CCcHHHHHHHHHHcCCC
Q 003958 231 YNRGPVVFHVAQYLGML 247 (784)
Q Consensus 231 ~~~~~~~~~~a~~~g~~ 247 (784)
...+.|++.|+.
T Consensus 163 -----~~~~~A~~~Gl~ 174 (225)
T 2pju_A 163 -----LITDLAEEAGMT 174 (225)
T ss_dssp -----HHHHHHHHTTSE
T ss_pred -----HHHHHHHHcCCc
Confidence 235677888864
No 226
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=62.71 E-value=25 Score=34.14 Aligned_cols=78 Identities=12% Similarity=0.064 Sum_probs=56.8
Q ss_pred CcEEEEEEEc--CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHH
Q 003958 164 WREVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVA 241 (784)
Q Consensus 164 w~~v~ii~~d--~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a 241 (784)
-+.|+++..+ +.|.....+.+++.+++.|..+.....- .+.......++.+...+.+.||+..... ...++.+
T Consensus 7 s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~~~l 81 (276)
T 3jy6_A 7 SKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDAN---ADIEREKTLLRAIGSRGFDGLILQSFSN--PQTVQEI 81 (276)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECT---TCHHHHHHHHHHHHTTTCSEEEEESSCC--HHHHHHH
T ss_pred CcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCC---CCHHHHHHHHHHHHhCCCCEEEEecCCc--HHHHHHH
Confidence 4678888864 4567778899999999999887754322 2444456778888888999999986655 6677777
Q ss_pred HHcCC
Q 003958 242 QYLGM 246 (784)
Q Consensus 242 ~~~g~ 246 (784)
.+.|.
T Consensus 82 ~~~~i 86 (276)
T 3jy6_A 82 LHQQM 86 (276)
T ss_dssp HTTSS
T ss_pred HHCCC
Confidence 76654
No 227
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=62.71 E-value=32 Score=33.65 Aligned_cols=79 Identities=9% Similarity=-0.003 Sum_probs=57.8
Q ss_pred cEEEEEEEc--CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCC----cHHHHH
Q 003958 165 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYN----RGPVVF 238 (784)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~----~~~~~~ 238 (784)
+.|+++..+ +.|.....+.+++.+++.|..+.....- .+...-...++.+...+.+.||+..... .....+
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 92 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTN---NNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYY 92 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECT---TCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCC---CChHHHHHHHHHHHHCCCCEEEEecccccccCCcHHHH
Confidence 789999864 5677888999999999999887754322 2444556777888888999999875432 445677
Q ss_pred HHHHHcCC
Q 003958 239 HVAQYLGM 246 (784)
Q Consensus 239 ~~a~~~g~ 246 (784)
+++.+.|.
T Consensus 93 ~~~~~~~i 100 (298)
T 3tb6_A 93 LNLEKNGI 100 (298)
T ss_dssp HHHHHTTC
T ss_pred HHHHhcCC
Confidence 78877664
No 228
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=62.31 E-value=12 Score=34.65 Aligned_cols=70 Identities=10% Similarity=0.122 Sum_probs=46.5
Q ss_pred eeeeHHHHHHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeEEeecCccccceeccccccccEEEEEe
Q 003958 493 SGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIITNRTKMADFTQPYIESGLVVVAP 572 (784)
Q Consensus 493 ~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~ 572 (784)
..+..+++..+.++.- .+++++.. +....++..|.+|++|+++..... ....+.+ .|+....++++++
T Consensus 17 ~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~~~~---~~~~l~~-~~l~~~~~~~v~~ 84 (219)
T 1i6a_A 17 PYLLPHIIPMLHQTFP-KLEMYLHE-------AQTHQLLAQLDSGKLDAVILALVK---ESEAFIE-VPLFDEPMLLAIY 84 (219)
T ss_dssp HHHHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEEECCG---GGTTSEE-EEEEEEEEEEEEE
T ss_pred hhhhhHHHHHHHHHCC-CeEEEEEE-------CChHHHHHHHHcCCeeEEEecCCC---CCCCcce-eeeecccEEEEEc
Confidence 3456778888888773 33355543 457889999999999999864321 1222332 5677788888887
Q ss_pred cc
Q 003958 573 VR 574 (784)
Q Consensus 573 ~~ 574 (784)
..
T Consensus 85 ~~ 86 (219)
T 1i6a_A 85 ED 86 (219)
T ss_dssp TT
T ss_pred CC
Confidence 65
No 229
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=62.19 E-value=15 Score=37.63 Aligned_cols=95 Identities=9% Similarity=0.029 Sum_probs=62.2
Q ss_pred CceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhh
Q 003958 139 PYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVA 218 (784)
Q Consensus 139 p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~ 218 (784)
|+-+...+... ..+.++++.++.+++.+|++...+. ...+.+.+.+++.|+++......+ +.+.+..... +.++
T Consensus 12 p~~i~~G~g~~---~~l~~~l~~~g~~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~~~~~~-~~~~~~v~~~-~~~~ 85 (354)
T 3ce9_A 12 PLILEVGNNKI---YNIGQIIKKGNFKRVSLYFGEGIYE-LFGETIEKSIKSSNIEIEAVETVK-NIDFDEIGTN-AFKI 85 (354)
T ss_dssp CSEEEEESSCG---GGHHHHHGGGTCSEEEEEEETTHHH-HHHHHHHHHHHTTTCEEEEEEEEC-CCBHHHHHHH-HTTS
T ss_pred CcEEEECCCHH---HHHHHHHHhcCCCeEEEEECccHHH-HHHHHHHHHHHHcCCeEEEEecCC-CCCHHHHHHH-HHhh
Confidence 44444444432 2356778888889999999765433 457888889988888775433233 3455667777 7788
Q ss_pred cCCceEEEEecc--CCcHHHHHH
Q 003958 219 LTESRIIVVHTH--YNRGPVVFH 239 (784)
Q Consensus 219 ~~~~~vIvl~~~--~~~~~~~~~ 239 (784)
+.+.|.||-.+. .-++..++.
T Consensus 86 ~~~~d~IIavGGGsv~D~aK~vA 108 (354)
T 3ce9_A 86 PAEVDALIGIGGGKAIDAVKYMA 108 (354)
T ss_dssp CTTCCEEEEEESHHHHHHHHHHH
T ss_pred hcCCCEEEEECChHHHHHHHHHH
Confidence 889999997644 344555554
No 230
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=61.93 E-value=49 Score=32.14 Aligned_cols=39 Identities=15% Similarity=0.315 Sum_probs=26.2
Q ss_pred HHHHHHhcCceEEEccCchhhHHHHHHhhhcCCccEEec
Q 003958 88 EALHLMEGQTVAIIGPQDAVTSHVVSHVANELQVPLLSF 126 (784)
Q Consensus 88 ~~~~li~~~v~aiiGp~~s~~~~~va~~~~~~~ip~Is~ 126 (784)
.+..+.+.++.+|+-+.++.++..+..+-+..++|+|..
T Consensus 57 ~~~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvigi 95 (267)
T 2gzm_A 57 MTEHLLDLNIKMLVIACNTATAVVLEEMQKQLPIPVVGV 95 (267)
T ss_dssp HHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEES
T ss_pred HHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEee
Confidence 334455568999887555555445666777789999973
No 231
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=61.57 E-value=25 Score=34.59 Aligned_cols=85 Identities=6% Similarity=-0.067 Sum_probs=58.5
Q ss_pred cCCcEEEEEEEc---CCCcchhHHHHHHHHhcc-CcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCC-cHHH
Q 003958 162 YGWREVIAIYVD---DDHGRNGIAALGDTLAAK-RCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYN-RGPV 236 (784)
Q Consensus 162 ~~w~~v~ii~~d---~~~g~~~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~-~~~~ 236 (784)
-+-++|+++..+ +.|.....+.+++.+++. |..+..........+.......++.+...+.+.||+..... ....
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~ 85 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTKG 85 (304)
T ss_dssp -CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGGGTHH
T ss_pred CCcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChHHHHH
Confidence 345678888854 457777888999999988 77666544322223455566778888888999999885543 4567
Q ss_pred HHHHHHHcCC
Q 003958 237 VFHVAQYLGM 246 (784)
Q Consensus 237 ~~~~a~~~g~ 246 (784)
.++++.+.|.
T Consensus 86 ~~~~~~~~~i 95 (304)
T 3gbv_A 86 FTDALNELGI 95 (304)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHCCC
Confidence 7777877664
No 232
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=61.05 E-value=16 Score=35.26 Aligned_cols=79 Identities=13% Similarity=0.061 Sum_probs=55.3
Q ss_pred cEEEEEEEc--CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHHH
Q 003958 165 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQ 242 (784)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a~ 242 (784)
+.|+++..+ +.|.....+.+++.+++.|..+..... . .+.......++.+.+.+.+.||+..........++++.
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARARGYQLLIASS-D--DQPDSERQLQQLFRARRCDALFVASCLPPEDDSYRELQ 79 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEEC-T--TCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHH
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeC-C--CCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHHHHH
Confidence 578888865 457777889999999999988775432 1 24445567778888889999998755423345666777
Q ss_pred HcCC
Q 003958 243 YLGM 246 (784)
Q Consensus 243 ~~g~ 246 (784)
+.|.
T Consensus 80 ~~~i 83 (272)
T 3o74_A 80 DKGL 83 (272)
T ss_dssp HTTC
T ss_pred HcCC
Confidence 6664
No 233
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=60.99 E-value=26 Score=34.26 Aligned_cols=81 Identities=11% Similarity=0.022 Sum_probs=56.9
Q ss_pred CCcEEEEEEEc--CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEecc-CCcHHHHHH
Q 003958 163 GWREVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH-YNRGPVVFH 239 (784)
Q Consensus 163 ~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~-~~~~~~~~~ 239 (784)
+-++|+++..+ +.|.....+.+++.+++.|..+.....- .+.......++.+...+.+.||+... .......++
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~ 83 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQ---NSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIE 83 (293)
T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECS---SCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHH
T ss_pred CCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCC---CCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHH
Confidence 44678998864 4566777889999999999887754321 34455567778887888999988754 344457788
Q ss_pred HHHHcCC
Q 003958 240 VAQYLGM 246 (784)
Q Consensus 240 ~a~~~g~ 246 (784)
++.+.|.
T Consensus 84 ~~~~~~i 90 (293)
T 3l6u_A 84 EAKKAGI 90 (293)
T ss_dssp HHHHTTC
T ss_pred HHHHcCC
Confidence 8877664
No 234
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=60.61 E-value=39 Score=32.61 Aligned_cols=43 Identities=19% Similarity=0.166 Sum_probs=30.5
Q ss_pred eeHHHHHHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeE
Q 003958 495 FCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 546 (784)
Q Consensus 495 ~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~ 546 (784)
+..++.+.+.+.+|+++++. + +.-.-+...|.+|++|+.....
T Consensus 16 i~~~i~~~~Le~~G~~Ve~~--~-------~~~~~~~~al~~G~iD~~~e~w 58 (256)
T 3l6g_A 16 ASINVLTQAMKEHGFDVKTT--A-------LDNAVAWQTVANGQADGMVSAW 58 (256)
T ss_dssp HHHHHHHHHHHHTTEEEEEE--E-------CCHHHHHHHHHTTSSSEEEEEE
T ss_pred HHHHHHHHHHHHCCCceEEE--E-------CChHHHHHHHHCCCCeEEEccc
Confidence 34567777777789885553 3 2345678999999999987543
No 235
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=59.63 E-value=40 Score=32.89 Aligned_cols=37 Identities=19% Similarity=0.253 Sum_probs=25.1
Q ss_pred HHHHhcCceEEEccCchhhHHHHHHhhhcCCccEEec
Q 003958 90 LHLMEGQTVAIIGPQDAVTSHVVSHVANELQVPLLSF 126 (784)
Q Consensus 90 ~~li~~~v~aiiGp~~s~~~~~va~~~~~~~ip~Is~ 126 (784)
..+.++++.+|+-+.++.++..+..+-+..++|+|..
T Consensus 68 ~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvigi 104 (273)
T 2oho_A 68 NFLLTQNVKMIVFACNTATAVAWEEVKAALDIPVLGV 104 (273)
T ss_dssp HHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEES
T ss_pred HHHHHCCCCEEEEeCchHhHHHHHHHHHhCCCCEEec
Confidence 3444558999887555555445566667789999973
No 236
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=58.86 E-value=62 Score=31.63 Aligned_cols=70 Identities=11% Similarity=0.012 Sum_probs=44.5
Q ss_pred eeeHHHHHHHHHHC-CCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeEEeecCccccceeccccccccEEEEEe
Q 003958 494 GFCIDVFTAAINLL-PYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIITNRTKMADFTQPYIESGLVVVAP 572 (784)
Q Consensus 494 G~~~dl~~~l~~~l-~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~ 572 (784)
.+...++..+.+.. +.+ +++.. +....++..|.+|++|+++........ ...+ -..|+....++++++
T Consensus 105 ~~l~~~l~~f~~~~P~i~--i~l~~-------~~~~~~~~~l~~g~~Dlai~~~~~~~~-~~~l-~~~~L~~~~~~~v~~ 173 (305)
T 3fxq_A 105 AALPLALASFAREFPDVT--VNVRD-------GMYPAVSPQLRDGTLDFALTAAHKHDI-DTDL-EAQPLYVSDVVIVGQ 173 (305)
T ss_dssp THHHHHHHHHHHHCTTCE--EEEEE-------CCTTTTHHHHHHTSSSEEEEECCGGGS-CTTE-EEEEEEECCEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCE--EEEEE-------CCHHHHHHHHHcCCCCEEEecCCCCCC-ccCe-eEEEeecCcEEEEEc
Confidence 45567778887776 444 55543 245677899999999999864322210 1112 245677788888886
Q ss_pred cc
Q 003958 573 VR 574 (784)
Q Consensus 573 ~~ 574 (784)
..
T Consensus 174 ~~ 175 (305)
T 3fxq_A 174 RQ 175 (305)
T ss_dssp TT
T ss_pred CC
Confidence 55
No 237
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=58.03 E-value=80 Score=30.74 Aligned_cols=125 Identities=7% Similarity=0.049 Sum_probs=64.9
Q ss_pred HHHHHHhcCceEEEccCchhhHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEE
Q 003958 88 EALHLMEGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREV 167 (784)
Q Consensus 88 ~~~~li~~~v~aiiGp~~s~~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v 167 (784)
.+..|.++++.+|+-+-++.++..+..+-+..++|+|... + .++...++..+-++|
T Consensus 61 ~~~~L~~~g~d~IViACNTas~~~l~~lr~~~~iPVigii---------------------e---p~~~~A~~~~~~~rI 116 (276)
T 2dwu_A 61 MVEFLKQFPLKALVVACNTAAAATLAALQEALSIPVIGVI---------------------H---PGARAAIKVTKKGKI 116 (276)
T ss_dssp HHHHHTTSCEEEEEECCHHHHHHHHHHHHHHCSSCEEESH---------------------H---HHHHHHHHHCSSSEE
T ss_pred HHHHHHHCCCCEEEEeCCcHHHHHHHHHHHHCCCCEEecc---------------------H---HHHHHHHHhcCCCeE
Confidence 4444555699999875555554566666677889998631 0 111112223455778
Q ss_pred EEEEEcCCCcchhHHHHHHHHhc--cCcEEEEeeccCCC--------C----ChhHHHHHHHHhhcCCceEEEEeccC-C
Q 003958 168 IAIYVDDDHGRNGIAALGDTLAA--KRCRISFKAPLSVE--------A----TEDEITDLLVKVALTESRIIVVHTHY-N 232 (784)
Q Consensus 168 ~ii~~d~~~g~~~~~~l~~~l~~--~gi~v~~~~~~~~~--------~----~~~d~~~~l~~l~~~~~~vIvl~~~~-~ 232 (784)
+++......-.. .+++.+++ .+..|.... -+.. . ....+...++.+++.++|.||+.|.. .
T Consensus 117 gVlaT~~T~~s~---~y~~~i~~~~~~~~v~~~~-~~~~v~~ve~g~~~~~~~~~~l~~~l~~l~~~~~D~IVLGCTh~p 192 (276)
T 2dwu_A 117 GVIGTVGTIQSN---MYEKALHELDTYLKVHSHA-CPTLATVVENRLEDTAYVTQQVKQALLPLTKEDIDTLILGCTHYP 192 (276)
T ss_dssp EEEECHHHHHTT---HHHHHHHHHCTTCEEEEEE-CTTHHHHHHHSTTCHHHHHHHHHHHHHHHHTSCCSEEEECSTTGG
T ss_pred EEEeChhhhhhH---HHHHHHHHhCCCCEEEeee-CHHHHHHHHcCCcCCHHHHHHHHHHHHHHHhcCCCEEEECCCCHH
Confidence 888754321111 12223332 244443221 1110 0 11245566777777789999997664 4
Q ss_pred cHHHHHHH
Q 003958 233 RGPVVFHV 240 (784)
Q Consensus 233 ~~~~~~~~ 240 (784)
.+...+++
T Consensus 193 ~l~~~i~~ 200 (276)
T 2dwu_A 193 LLESYIKK 200 (276)
T ss_dssp GGHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 238
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=58.03 E-value=1.3e+02 Score=29.70 Aligned_cols=70 Identities=17% Similarity=0.108 Sum_probs=43.3
Q ss_pred eeeHHHHHHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeEEeecCccccceeccccccccEEEEEec
Q 003958 494 GFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIITNRTKMADFTQPYIESGLVVVAPV 573 (784)
Q Consensus 494 G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~ 573 (784)
.+...++..+.+... .+++++.. +....++..|.+|++|+++..... .....+. ..++....++++++.
T Consensus 106 ~~l~~~l~~f~~~~P-~v~i~l~~-------~~~~~~~~~l~~g~~Dlai~~~~~--~~~~~l~-~~~L~~~~~~~v~~~ 174 (324)
T 1al3_A 106 YALPGVIKGFIERYP-RVSLHMHQ-------GSPTQIAEAVSKGNADFAIATEAL--HLYDDLV-MLPCYHWNRSIVVTP 174 (324)
T ss_dssp HTSHHHHHHHHHHCT-EEEEEEEE-------CCHHHHHHHHHTTCCSEEEESSCC--CTTSCEE-EEEEEEECEEEEECT
T ss_pred hHHHHHHHHHHHHCC-CCEEEEEE-------CCHHHHHHHHHCCCceEEEEecCC--CCCCCee-EEEecCCceEEEEcC
Confidence 455677888887763 23355443 356788999999999999864221 1112222 346666777777755
Q ss_pred c
Q 003958 574 R 574 (784)
Q Consensus 574 ~ 574 (784)
.
T Consensus 175 ~ 175 (324)
T 1al3_A 175 E 175 (324)
T ss_dssp T
T ss_pred C
Confidence 4
No 239
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=57.99 E-value=1e+02 Score=27.56 Aligned_cols=69 Identities=14% Similarity=0.088 Sum_probs=44.1
Q ss_pred eeeHHHHHHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeEEeecCccccceeccccccccEEEEEec
Q 003958 494 GFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIITNRTKMADFTQPYIESGLVVVAPV 573 (784)
Q Consensus 494 G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~ 573 (784)
.+..+++..+.++.- .+++++.. +....+...|.+|++|+++.... .....+. +.++....+.++++.
T Consensus 18 ~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~l~~~l~~g~~Dl~i~~~~---~~~~~l~-~~~l~~~~~~~v~~~ 85 (209)
T 2ql3_A 18 TILPSMLYAFTAEYP-RASVEFRE-------DTQNRLRTQLEGGELDVAIVYDL---DLSPEWQ-TVPLMTREPMVVLGA 85 (209)
T ss_dssp TTHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHTTSCSEEEEESS---SCCTTEE-EEEEEEECCEEEEET
T ss_pred hhHHHHHHHHHHHCC-CceEEEEE-------CcHHHHHHHHHcCCccEEEEecC---CCCCCce-EEEeecCceEEEEeC
Confidence 456678888888773 33355543 35778899999999999985421 1112222 346677777777765
Q ss_pred c
Q 003958 574 R 574 (784)
Q Consensus 574 ~ 574 (784)
.
T Consensus 86 ~ 86 (209)
T 2ql3_A 86 E 86 (209)
T ss_dssp T
T ss_pred C
Confidence 4
No 240
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=57.73 E-value=27 Score=34.98 Aligned_cols=79 Identities=8% Similarity=0.016 Sum_probs=56.9
Q ss_pred cEEEEEEEc--CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccC-CcHHHHHHHH
Q 003958 165 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY-NRGPVVFHVA 241 (784)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~-~~~~~~~~~a 241 (784)
++|+++..+ +.|.....+.+++.+++.|..+..... ..+...-...++.+...+.+.||+.... ......++++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~~~ 80 (330)
T 3uug_A 4 GSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYA---DDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQA 80 (330)
T ss_dssp CEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHHHH
T ss_pred cEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEeeC---CCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHHHH
Confidence 578888864 567778889999999999988765441 1244445567777777789999987544 3456778888
Q ss_pred HHcCC
Q 003958 242 QYLGM 246 (784)
Q Consensus 242 ~~~g~ 246 (784)
.+.|.
T Consensus 81 ~~~gi 85 (330)
T 3uug_A 81 GEQGI 85 (330)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 87664
No 241
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=57.44 E-value=4 Score=40.66 Aligned_cols=52 Identities=12% Similarity=0.179 Sum_probs=41.2
Q ss_pred Cceeehhhhhhhhhccc--ccccccchhh------HHHHHHHHHHHHHHhhccccceeeE
Q 003958 624 QVVTIFWFSFSTMFFAH--KEKTVSALGR------LVLIIWLFVVLIINSSYTASLTSIL 675 (784)
Q Consensus 624 ~~~~~~~~~~~~~~~~~--~~~p~~~~~R------~~~~~w~~~~lvl~~~Yta~L~s~l 675 (784)
++.+++|+++.++..-| +-.|.+..+| ++.++|.++++.++++-.+.+..++
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~ 283 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWL 283 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999987654 5578877776 5999999999998888777665554
No 242
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=56.78 E-value=43 Score=33.63 Aligned_cols=86 Identities=7% Similarity=0.010 Sum_probs=54.8
Q ss_pred HHHHHcCCcEEEEEEEc--CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcH
Q 003958 157 EIVDHYGWREVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRG 234 (784)
Q Consensus 157 ~~l~~~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~ 234 (784)
+-|+.-.-+.|+++..+ +.|.....+.+++.+++.|..+.....- .+.......++.+...+.|.||+.......
T Consensus 55 ~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~ 131 (339)
T 3h5o_A 55 STLASAKSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGNSH---YDAGQELQLLRAYLQHRPDGVLITGLSHAE 131 (339)
T ss_dssp --------CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEECT---TCHHHHHHHHHHHHTTCCSEEEEECSCCCT
T ss_pred HhhhcCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC---CChHHHHHHHHHHHcCCCCEEEEeCCCCCH
Confidence 33444445689999864 5677888999999999999887653321 244455677788888899999987543322
Q ss_pred HHHHHHHHHcCC
Q 003958 235 PVVFHVAQYLGM 246 (784)
Q Consensus 235 ~~~~~~a~~~g~ 246 (784)
..++.+.+.+.
T Consensus 132 -~~~~~l~~~~i 142 (339)
T 3h5o_A 132 -PFERILSQHAL 142 (339)
T ss_dssp -THHHHHHHTTC
T ss_pred -HHHHHHhcCCC
Confidence 45566666553
No 243
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=56.69 E-value=30 Score=34.00 Aligned_cols=62 Identities=11% Similarity=0.048 Sum_probs=40.6
Q ss_pred hhhCCCceEEe-eCchHHHHHHh---hcccCccCceeCC-CHHHHHHHHhcCCcCCCeeEEEechhhhHHHHcC
Q 003958 690 LRSSNYPIGYQ-VNSFARNYLVD---ELNIDESRLVPLN-SPEEYAKALKDGPHKGGVAAVVDDRAYAELFLST 758 (784)
Q Consensus 690 l~~~~~~i~~~-~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~ 758 (784)
|+ |++|++. .++..+..++. ..+. ..++.... ++.+...++++ |++||.+.-.+.+.....+
T Consensus 94 Lk--GK~Iav~~~gs~~~~ll~~~L~~~Gl-dv~~~~~~~~~~~~~~al~~----G~vDa~~~~eP~~~~a~~~ 160 (283)
T 3hn0_A 94 LK--EPALYVFGNGTTPDILTRYYLGRQRL-DYPLNYAFNTAGEITQGILA----GKVNRAVLGEPFLSIALRK 160 (283)
T ss_dssp CC--SCCEECSSTTSHHHHHHHHHHHHHTC-CCCEECSCCSHHHHHHHHHH----TSCSEEEECTTHHHHHHHH
T ss_pred CC--CCEEEecCCCCcHHHHHHHHHHHcCC-ceEEEEccCCHHHHHHHHHc----CCCCEEEecccHHHHHHhh
Confidence 66 8899985 66654444432 2233 22333233 58999999999 8999988877877765544
No 244
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=56.59 E-value=27 Score=35.43 Aligned_cols=80 Identities=5% Similarity=0.014 Sum_probs=56.1
Q ss_pred CcEEEEEEEc---CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhc--CCceEEEEeccCCcHHHHH
Q 003958 164 WREVIAIYVD---DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL--TESRIIVVHTHYNRGPVVF 238 (784)
Q Consensus 164 w~~v~ii~~d---~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vIvl~~~~~~~~~~~ 238 (784)
-.+|++|..+ +.|.....+.+++.+++.|+.+..... . .+.......++.+.. .++|.||+.........++
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~-~--~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~ 79 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYA-E--RDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQIL 79 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEEC-T--TCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEEC-C--CCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHHH
Confidence 4678999865 257778889999999999988775421 1 234444556666665 5899999876445566778
Q ss_pred HHHHHcCC
Q 003958 239 HVAQYLGM 246 (784)
Q Consensus 239 ~~a~~~g~ 246 (784)
+.+.+.|.
T Consensus 80 ~~~~~~gi 87 (350)
T 3h75_A 80 RLSQGSGI 87 (350)
T ss_dssp HHHTTSCC
T ss_pred HHHHhCCC
Confidence 88877664
No 245
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=56.17 E-value=16 Score=37.77 Aligned_cols=95 Identities=13% Similarity=0.034 Sum_probs=61.8
Q ss_pred CceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhh
Q 003958 139 PYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVA 218 (784)
Q Consensus 139 p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~ 218 (784)
|+-+...+... ..+.++++.++ +++.||++...+. ...+.+.+.+++.|+.+.. ..+......++....++.++
T Consensus 10 p~~i~~G~g~~---~~l~~~l~~~g-~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~-~~~~ge~~~~~v~~~~~~~~ 83 (370)
T 1jq5_A 10 PAKYVQGKNVI---TKIANYLEGIG-NKTVVIADEIVWK-IAGHTIVNELKKGNIAAEE-VVFSGEASRNEVERIANIAR 83 (370)
T ss_dssp CSEEEEETTGG---GGHHHHHTTTC-SEEEEEECHHHHH-HTHHHHHHHHHTTTCEEEE-EECCSSCBHHHHHHHHHHHH
T ss_pred CCeEEECcCHH---HHHHHHHHHcC-CeEEEEEChHHHH-HHHHHHHHHHHHcCCeEEE-EeeCCCCCHHHHHHHHHHHH
Confidence 44444444332 23566777788 9999998654332 4578888999888988753 33443344557777888888
Q ss_pred cCCceEEEEecc--CCcHHHHHH
Q 003958 219 LTESRIIVVHTH--YNRGPVVFH 239 (784)
Q Consensus 219 ~~~~~vIvl~~~--~~~~~~~~~ 239 (784)
+.++++||-.+. .-++..++.
T Consensus 84 ~~~~d~IIavGGGsv~D~aK~iA 106 (370)
T 1jq5_A 84 KAEAAIVIGVGGGKTLDTAKAVA 106 (370)
T ss_dssp HTTCSEEEEEESHHHHHHHHHHH
T ss_pred hcCCCEEEEeCChHHHHHHHHHH
Confidence 889999997644 345555554
No 246
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=56.14 E-value=33 Score=33.41 Aligned_cols=79 Identities=4% Similarity=-0.056 Sum_probs=53.4
Q ss_pred cEEEEEEEc--CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccC-CcHHHHHHHH
Q 003958 165 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY-NRGPVVFHVA 241 (784)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~-~~~~~~~~~a 241 (784)
++|+++..+ +.|.....+.+++.+++.|..+..... ..+.......++.+...+.+.||+.... ......++++
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~ 79 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDS---QNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRA 79 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHHHH
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeCC---CCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHH
Confidence 468888864 567777888999999999988764322 1233444566777777889998887543 3334567777
Q ss_pred HHcCC
Q 003958 242 QYLGM 246 (784)
Q Consensus 242 ~~~g~ 246 (784)
.+.+.
T Consensus 80 ~~~~i 84 (290)
T 2fn9_A 80 KEAGI 84 (290)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 76553
No 247
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=56.12 E-value=34 Score=33.39 Aligned_cols=38 Identities=5% Similarity=-0.019 Sum_probs=27.4
Q ss_pred HHHHHHHHHCCCccceEEee-CCCCCCCCChhHHHHHHHcCcccEEE
Q 003958 498 DVFTAAINLLPYAVPYKLIP-FGDGHNNPSCTELVRLITAGVYDAAV 543 (784)
Q Consensus 498 dl~~~l~~~l~f~~~~~~~~-~~~~~~~~~~~g~i~~l~~~~~D~~~ 543 (784)
.+++.+-+..|++ +++.. . +....++..|.+|++|++.
T Consensus 23 ~~~~~~le~~G~~--Ve~~~~~------g~~~~~~~al~~G~iD~~~ 61 (275)
T 1sw5_A 23 NMIAILLEENGYK--AEVKEGL------GGTLVNYEALKRNDIQLYV 61 (275)
T ss_dssp HHHHHHHHHTTCC--EEECTTC------CSHHHHHHHHHHTSSSEEE
T ss_pred HHHHHHHHHcCCc--EEEEeCC------CchHHHHHHHHcCCCcEEE
Confidence 4555566677888 54443 3 4567789999999999986
No 248
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=56.10 E-value=1e+02 Score=29.64 Aligned_cols=69 Identities=12% Similarity=0.004 Sum_probs=44.5
Q ss_pred eeeHHHHHHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeEEeecCccccceeccccccccEEEEEec
Q 003958 494 GFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIITNRTKMADFTQPYIESGLVVVAPV 573 (784)
Q Consensus 494 G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~ 573 (784)
.+..+++..+.+..- .+++++.. +....++..|.+|++|+++...... ...+. ..|.....+.++++.
T Consensus 104 ~~l~~~l~~f~~~~P-~i~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~~~~~---~~~l~-~~~l~~~~~~~v~~~ 171 (294)
T 1ixc_A 104 RSLPLLLRAFLTSTP-TATVSLTH-------MTKDEQVEGLLAGTIHVGFSRFFPR---HPGIE-IVNIAQEDLYLAVHR 171 (294)
T ss_dssp THHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEESCCCC---CTTEE-EEEEEEEEEEEEEEG
T ss_pred HHHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHCCCccEEEEecCCC---CCCce-EEEEeeccEEEEEeC
Confidence 455677788877763 33355543 3466889999999999998643221 22222 356777788888765
Q ss_pred c
Q 003958 574 R 574 (784)
Q Consensus 574 ~ 574 (784)
.
T Consensus 172 ~ 172 (294)
T 1ixc_A 172 S 172 (294)
T ss_dssp G
T ss_pred C
Confidence 5
No 249
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=55.60 E-value=1.1e+02 Score=29.72 Aligned_cols=117 Identities=11% Similarity=0.066 Sum_probs=70.8
Q ss_pred EEEEEeecCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc--CceEEEccCchhhHH
Q 003958 33 NIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG--QTVAIIGPQDAVTSH 110 (784)
Q Consensus 33 ~IG~i~~~~~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~--~v~aiiGp~~s~~~~ 110 (784)
+||.+..........-..|+.-|+++.+ + + ... .+.....+...+.+.+.+++.. .+.+|+... ...+.
T Consensus 128 ~I~~i~~~~~~~~~~R~~Gf~~al~~~g----~-~-~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~-d~~A~ 198 (289)
T 3k9c_A 128 NIAHIDGADAPGGADRRAGFLAAMDRHG----L-S-ASA--TVVTGGTTETEGAEGMHTLLEMPTPPTAVVAFN-DRCAT 198 (289)
T ss_dssp SEEEECCTTSTTHHHHHHHHHHHHHHTT----C-G-GGE--EEECCCSSHHHHHHHHHHHHTSSSCCSEEEESS-HHHHH
T ss_pred cEEEEeCCCCccHHHHHHHHHHHHHHCC----C-C-CCc--cEEECCCCHHHHHHHHHHHHcCCCCCCEEEECC-hHHHH
Confidence 5777765543334455678888887732 1 1 112 2334556788888888888875 688999754 34444
Q ss_pred HHHHhhhcCC------ccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHH
Q 003958 111 VVSHVANELQ------VPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVD 160 (784)
Q Consensus 111 ~va~~~~~~~------ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~ 160 (784)
.+...+...+ +.++++.... +.....|.+..+..+...++...+++|.
T Consensus 199 g~~~al~~~g~~vP~di~vig~D~~~--~~~~~~p~lttv~~~~~~~g~~a~~~l~ 252 (289)
T 3k9c_A 199 GVLDLLVRSGRDVPADISVVGYDDSR--LARIPHVQMTTISQDATHMAEAAVDGAL 252 (289)
T ss_dssp HHHHHHHHTTCCTTTTCEEEEEECCT--TTTCTTTCCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCceEEEEECCHH--HHhcCCCCcceEecCHHHHHHHHHHHHH
Confidence 4445555443 3467665432 3332335666667777788888887764
No 250
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=55.45 E-value=25 Score=34.33 Aligned_cols=79 Identities=5% Similarity=-0.035 Sum_probs=56.4
Q ss_pred cEEEEEEEc--CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccC-CcHHHHHHHH
Q 003958 165 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY-NRGPVVFHVA 241 (784)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~-~~~~~~~~~a 241 (784)
++|+++..+ +.|.....+.+++.+++.|..+..... . .+.......++.+...+.+.||+.... ......++++
T Consensus 6 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 82 (291)
T 3l49_A 6 KTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDA-G--RNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQKI 82 (291)
T ss_dssp CEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEEC-T--TCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcC-C--CCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHH
Confidence 578888864 456667788999999999988775432 1 244455677777777889999987543 3456677888
Q ss_pred HHcCC
Q 003958 242 QYLGM 246 (784)
Q Consensus 242 ~~~g~ 246 (784)
.+.|.
T Consensus 83 ~~~~i 87 (291)
T 3l49_A 83 NDAGI 87 (291)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77664
No 251
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=55.40 E-value=35 Score=35.61 Aligned_cols=93 Identities=12% Similarity=0.010 Sum_probs=60.0
Q ss_pred CcEEEEEEEcCCCcc--hhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccC------CcHH
Q 003958 164 WREVIAIYVDDDHGR--NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY------NRGP 235 (784)
Q Consensus 164 w~~v~ii~~d~~~g~--~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~------~~~~ 235 (784)
-++|.|+|. ..||. ..++.+.+.+.+.|+++....... ....+...++..+. +++.|++.+.. ....
T Consensus 265 ~~~v~I~Y~-S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d--~~~~~~s~i~~~i~--~~~~ivlGspT~~~~~~p~~~ 339 (410)
T 4dik_A 265 KGKVTVIYD-SMYGFVENVMKKAIDSLKEKGFTPVVYKFSD--EERPAISEILKDIP--DSEALIFGVSTYEAEIHPLMR 339 (410)
T ss_dssp TTEEEEEEE-CSSSHHHHHHHHHHHHHHHTTCEEEEEEECS--SCCCCHHHHHHHST--TCSEEEEEECCTTSSSCHHHH
T ss_pred ccceeeEEe-cccChHHHHHHHHHHHHHhcCCceEEEEecc--CCCCCHHHHHHHHH--hCCeEEEEeCCcCCcCCHHHH
Confidence 458999994 55664 457899999999998876544443 23445666677665 45667775443 2345
Q ss_pred HHHHHHHHcCCCCCCeEEEecCcccc
Q 003958 236 VVFHVAQYLGMLGTGYVWIATSWLST 261 (784)
Q Consensus 236 ~~~~~a~~~g~~~~~~~wi~~~~~~~ 261 (784)
.++.........+..-..+++.+|..
T Consensus 340 ~~l~~l~~~~~~~K~~~~FGSyGWsg 365 (410)
T 4dik_A 340 FTLLEIIDKANYEKPVLVFGVHGWAP 365 (410)
T ss_dssp HHHHHHHHHCCCCCEEEEEEECCCCC
T ss_pred HHHHHHHhcccCCCEEEEEECCCCCc
Confidence 56777666666555555677766653
No 252
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=55.04 E-value=30 Score=34.05 Aligned_cols=78 Identities=9% Similarity=-0.012 Sum_probs=55.7
Q ss_pred cEEEEEEEc--CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccC-CcHHHHHHHH
Q 003958 165 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY-NRGPVVFHVA 241 (784)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~-~~~~~~~~~a 241 (784)
.+|+++..+ +.|.....+.+++.+++.|..+..... .+.......++.+...+.|.||+.... ......++++
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~----~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~ 78 (306)
T 8abp_A 3 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV----PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKA 78 (306)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEEC----CSHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCC----CCHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHH
Confidence 368888864 567777888999999999988764432 244555677778777889999987543 3455677888
Q ss_pred HHcCC
Q 003958 242 QYLGM 246 (784)
Q Consensus 242 ~~~g~ 246 (784)
.+.|.
T Consensus 79 ~~~~i 83 (306)
T 8abp_A 79 RGYDM 83 (306)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 87664
No 253
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=54.43 E-value=1.5e+02 Score=29.94 Aligned_cols=69 Identities=13% Similarity=0.110 Sum_probs=39.7
Q ss_pred HHHHHHHHHC-CCccceEEeeCCCCCCCCChhHHHHHHHc-C-cccEEEeeEEeecCcc---ccceeccccccccEEEEE
Q 003958 498 DVFTAAINLL-PYAVPYKLIPFGDGHNNPSCTELVRLITA-G-VYDAAVGDIAIITNRT---KMADFTQPYIESGLVVVA 571 (784)
Q Consensus 498 dl~~~l~~~l-~f~~~~~~~~~~~~~~~~~~~g~i~~l~~-~-~~D~~~~~~~~t~~r~---~~~~fs~p~~~~~~~~~~ 571 (784)
++.+.+.++. |.++++.+ +.-..++..+.+ | .+|+.++.-.-..++. ...+--.+|....+++++
T Consensus 59 ~l~~~Fe~~~pgv~V~~~~---------ggSg~l~~qi~e~G~~aDVf~sad~~~~~~l~~~g~~~~~~~~a~n~lVliv 129 (354)
T 3k6v_A 59 ELEAEFEAQHPGVDVQREA---------AGSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFARNQMILAY 129 (354)
T ss_dssp HHHHHHHHHSTTCEEEEEE---------ECHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEECCEEEEE
T ss_pred HHHHHHHHHCCCcEEEEEe---------CCHHHHHHHHHhcCCCccEEEECCHHHHHHHHhCCCCCCceEeECCeEEEEE
Confidence 5667777777 87755544 334467777753 4 7998875422111111 122334556677788887
Q ss_pred eccC
Q 003958 572 PVRK 575 (784)
Q Consensus 572 ~~~~ 575 (784)
++.+
T Consensus 130 ~~~~ 133 (354)
T 3k6v_A 130 TNES 133 (354)
T ss_dssp CTTS
T ss_pred ECCC
Confidence 6653
No 254
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=53.87 E-value=33 Score=33.83 Aligned_cols=87 Identities=9% Similarity=-0.011 Sum_probs=53.8
Q ss_pred HHHHHHcCCcEEEEEEEc--CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCc
Q 003958 156 AEIVDHYGWREVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNR 233 (784)
Q Consensus 156 ~~~l~~~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~ 233 (784)
++-|+.-+-+.|+++..+ +.|.....+.+++.+++.|..+.....- .+......+++.+...+.+.||+......
T Consensus 7 Ar~L~~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 83 (303)
T 3kke_A 7 ARALRHSRSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQID---APPRGTQQLSRLVSEGRVDGVLLQRREDF 83 (303)
T ss_dssp ----------CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEECC---STTHHHHHHHHHHHSCSSSEEEECCCTTC
T ss_pred HHHHhhCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeCC---CChHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 334444445679998864 5677888999999999999887654322 23344567788888889999999755433
Q ss_pred HHHHHHHHHHcCC
Q 003958 234 GPVVFHVAQYLGM 246 (784)
Q Consensus 234 ~~~~~~~a~~~g~ 246 (784)
....++.+.+ |.
T Consensus 84 ~~~~~~~l~~-~i 95 (303)
T 3kke_A 84 DDDMLAAVLE-GV 95 (303)
T ss_dssp CHHHHHHHHT-TS
T ss_pred cHHHHHHHhC-CC
Confidence 2225666665 53
No 255
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=52.04 E-value=59 Score=31.55 Aligned_cols=84 Identities=4% Similarity=-0.107 Sum_probs=52.1
Q ss_pred HHHcCCcEEEEEEEc----CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcH
Q 003958 159 VDHYGWREVIAIYVD----DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRG 234 (784)
Q Consensus 159 l~~~~w~~v~ii~~d----~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~ 234 (784)
|+.-.-.+|+++..+ +.|.....+.+++.+++.|..+.... ...+.......++.+...+.+.||+......
T Consensus 14 L~~~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~- 89 (296)
T 3brq_A 14 LSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLAD---GKHSAEEERQAIQYLLDLRCDAIMIYPRFLS- 89 (296)
T ss_dssp -----CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEEC---CTTSHHHHHHHHHHHHHTTCSEEEEECSSSC-
T ss_pred hhcCCCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEe---CCCCHHHHHHHHHHHHhcCCCEEEEecCCCC-
Confidence 444445689999865 45777888999999999998876432 1123444556777777788999888754333
Q ss_pred HHHHHHHHH-cCC
Q 003958 235 PVVFHVAQY-LGM 246 (784)
Q Consensus 235 ~~~~~~a~~-~g~ 246 (784)
...++.+.+ .|.
T Consensus 90 ~~~~~~l~~~~~i 102 (296)
T 3brq_A 90 VDEIDDIIDAHSQ 102 (296)
T ss_dssp HHHHHHHHHTCSS
T ss_pred hHHHHHHHhcCCC
Confidence 245566666 453
No 256
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=51.78 E-value=1.8e+02 Score=28.62 Aligned_cols=145 Identities=8% Similarity=-0.067 Sum_probs=88.3
Q ss_pred CCHHHHHHHHHHHHhcCceEE--EccCchh-hHHHHHHhhhcC-CccEEecccCCCCCCcCCCCceEeecCChHHHHHHH
Q 003958 80 HSGFLALAEALHLMEGQTVAI--IGPQDAV-TSHVVSHVANEL-QVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAI 155 (784)
Q Consensus 80 ~~~~~a~~~~~~li~~~v~ai--iGp~~s~-~~~~va~~~~~~-~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai 155 (784)
-.+..+...+.++++.++.++ +.+..+. ....+...++.. ++.+|.+.+. .+-... ....-..|..
T Consensus 79 vP~~~~~~~~~e~i~~Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~liGPnc~--Gii~p~-~~~~~~~~~~------- 148 (305)
T 2fp4_A 79 VPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCP--GVINPG-ECKIGIMPGH------- 148 (305)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCEEECSSSC--EEEETT-TEEEESSCGG-------
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHhcCCcEEEeCCCC--eEeccc-ccceeecccc-------
Confidence 356667777778888876663 3343332 234677888888 9999876553 111100 0111122211
Q ss_pred HHHHHHcCCcEEEEEEEcCCCcchhHHHHHHHHhccCcEEEEeeccCCCCC-hhHHHHHHHHhhc-CCceEEEEeccC--
Q 003958 156 AEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEAT-EDEITDLLVKVAL-TESRIIVVHTHY-- 231 (784)
Q Consensus 156 ~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~-~~d~~~~l~~l~~-~~~~vIvl~~~~-- 231 (784)
.+.--+|++|..... ....+.+.+.+.|+-+.....+-.... ..++.+.++.+.+ .++++|+++...
T Consensus 149 -----~~~~G~va~vSqSG~----l~~~~~~~~~~~g~G~S~~vs~G~~~~~~~~~~d~l~~~~~Dp~T~~I~l~~E~~g 219 (305)
T 2fp4_A 149 -----IHKKGRIGIVSRSGT----LTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGG 219 (305)
T ss_dssp -----GCCEEEEEEEESCSH----HHHHHHHHHHHTTCCEEEEEECCSSSSCSCCHHHHHHHHHHCTTCCEEEEEEESSS
T ss_pred -----CCCCCCEEEEecchH----HHHHHHHHHHhcCCCeeEEeccCCCcCCCCCHHHHHHHHhcCCCCcEEEEEEecCC
Confidence 234467999986654 345555666777766665555543321 3567777877754 689999999775
Q ss_pred ---CcHHHHHHHHHH
Q 003958 232 ---NRGPVVFHVAQY 243 (784)
Q Consensus 232 ---~~~~~~~~~a~~ 243 (784)
.+++.|++++++
T Consensus 220 ~~e~~~~~f~~~~~~ 234 (305)
T 2fp4_A 220 NAEENAAEFLKQHNS 234 (305)
T ss_dssp SHHHHHHHHHHHHSC
T ss_pred chhhHHHHHHHHHHH
Confidence 348899988764
No 257
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=51.63 E-value=29 Score=34.13 Aligned_cols=81 Identities=10% Similarity=-0.015 Sum_probs=56.6
Q ss_pred cEEEEEEEc--CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEecc-CCcHHHHHHHH
Q 003958 165 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH-YNRGPVVFHVA 241 (784)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~-~~~~~~~~~~a 241 (784)
.+|+++..+ +.|.....+.+++.+++.|..+.....-.. .+.......++.+...+.+.||+... .......++++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~ 82 (297)
T 3rot_A 4 DKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGA-NDVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQRA 82 (297)
T ss_dssp CEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSS-CCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHHHH
T ss_pred EEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCc-CCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHH
Confidence 467888754 567778889999999999988775431110 14455567778877788999988644 44456778888
Q ss_pred HHcCC
Q 003958 242 QYLGM 246 (784)
Q Consensus 242 ~~~g~ 246 (784)
.+.|.
T Consensus 83 ~~~gi 87 (297)
T 3rot_A 83 NKLNI 87 (297)
T ss_dssp HHHTC
T ss_pred HHCCC
Confidence 87664
No 258
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=51.63 E-value=53 Score=29.28 Aligned_cols=67 Identities=6% Similarity=0.050 Sum_probs=48.4
Q ss_pred cCCcEEEEEEEcCCCcc---hhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhc-CCceEEEEecc
Q 003958 162 YGWREVIAIYVDDDHGR---NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL-TESRIIVVHTH 230 (784)
Q Consensus 162 ~~w~~v~ii~~d~~~g~---~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~-~~~~vIvl~~~ 230 (784)
|.--+++||...|+-|+ .....+.+.+++.|+.+.....++ .+...+...+++..+ .++|+||..+.
T Consensus 11 ~~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~--Dd~~~i~~~l~~~~~~~~~DlVittGG 81 (169)
T 1y5e_A 11 PKEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVK--DDKESIQQAVLAGYHKEDVDVVLTNGG 81 (169)
T ss_dssp -CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEEC--SSHHHHHHHHHHHHTCTTCSEEEEECC
T ss_pred ccCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeC--CCHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 34468999887665543 345678888889999988777777 456677788877665 37899998744
No 259
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=50.94 E-value=75 Score=30.81 Aligned_cols=38 Identities=11% Similarity=0.260 Sum_probs=26.3
Q ss_pred HHHHHHhcCceEEEccCchhhHHHHHHhhhcCCccEEe
Q 003958 88 EALHLMEGQTVAIIGPQDAVTSHVVSHVANELQVPLLS 125 (784)
Q Consensus 88 ~~~~li~~~v~aiiGp~~s~~~~~va~~~~~~~ip~Is 125 (784)
.+..|.+.++.+|+-+.++.++.++..+-+..++|+|.
T Consensus 59 ~~~~L~~~g~~~IVIACNTa~~~al~~lr~~~~iPvig 96 (269)
T 3ist_A 59 MTNFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIG 96 (269)
T ss_dssp HHHHHHHTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHCCCCEEEEeCCCccHHHHHHHHHhcCCCEEe
Confidence 33445556999998765555554566677778999996
No 260
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=50.84 E-value=42 Score=32.39 Aligned_cols=59 Identities=8% Similarity=-0.023 Sum_probs=37.8
Q ss_pred hHhhhhCCCceEEeeCchHHHHHHhhcccCccCceeCCCHHHHHHHHhcCCcCCCeeEEEec-hhhhH
Q 003958 687 IDSLRSSNYPIGYQVNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDD-RAYAE 753 (784)
Q Consensus 687 ~~dl~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~-~~~~~ 753 (784)
++||+ |++||+...+....++.+..-.. .++ .+....+...++.+ |++||.+.- .+.+.
T Consensus 91 ~~dLk--Gk~Ia~~~~~~~~~~ll~~ll~~-~~~-~~~~~~~~~~al~~----G~vDa~~~~~ep~~~ 150 (272)
T 2czl_A 91 LQALE--GLRVAVPGRHTTAYFLLSLYAQG-FVP-VEVRYDRILPMVAQ----GEVEAGLIIHESRFT 150 (272)
T ss_dssp CSCCT--TCEEEESCTTSHHHHHHHHHCSS-CEE-EECCGGGHHHHHHT----TSSSEEEECTTHHHH
T ss_pred hHHhC--CCEEEeCCCCchHHHHHHHHhcc-Cce-eecChHHHHHHHHC----CCCCEEEEecchhhh
Confidence 77888 99999987555544432322111 122 23455688899999 899998874 56665
No 261
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=50.75 E-value=51 Score=29.72 Aligned_cols=67 Identities=9% Similarity=-0.017 Sum_probs=47.8
Q ss_pred cCCcEEEEEEEcCC----------CcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcC-CceEEEEecc
Q 003958 162 YGWREVIAIYVDDD----------HGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT-ESRIIVVHTH 230 (784)
Q Consensus 162 ~~w~~v~ii~~d~~----------~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~-~~~vIvl~~~ 230 (784)
+.--+++||...|+ .-......+.+.+++.|.++.....++ .+...+...+++..+. ++|+||..+.
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~--Dd~~~I~~al~~a~~~~~~DlVittGG 90 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVP--DDKIKILKAFTDALSIDEVDVIISTGG 90 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEEC--SCHHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeC--CCHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 45568888886542 223456778888999999988777777 4566777888776544 5899998743
No 262
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=50.68 E-value=1.2e+02 Score=25.84 Aligned_cols=85 Identities=9% Similarity=0.089 Sum_probs=55.2
Q ss_pred cEEEEEEEcCCCcchhHHHHHHHHhccCcEEEEeec-cCCCCChhHHHHHHHHhhcCCceEEEEeccCCc----HHHHHH
Q 003958 165 REVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAP-LSVEATEDEITDLLVKVALTESRIIVVHTHYNR----GPVVFH 239 (784)
Q Consensus 165 ~~v~ii~~d~~~g~~~~~~l~~~l~~~gi~v~~~~~-~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~----~~~~~~ 239 (784)
.+|.+.....+.-.-....+...++..|++|..-.. .+ ...+++.+++.++++|.+.+.... +..+++
T Consensus 4 ~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p-------~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~ 76 (137)
T 1ccw_A 4 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSP-------QELFIKAAIETKADAILVSSLYGQGEIDCKGLRQ 76 (137)
T ss_dssp CEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEEC-------HHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHH
T ss_pred CEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCCC-------HHHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHH
Confidence 355666655555555677788889999999885432 32 345666777788999999865433 455677
Q ss_pred HHHHcCCCCCCeEEEecC
Q 003958 240 VAQYLGMLGTGYVWIATS 257 (784)
Q Consensus 240 ~a~~~g~~~~~~~wi~~~ 257 (784)
++++.|.. .-.+|++..
T Consensus 77 ~l~~~g~~-~i~v~vGG~ 93 (137)
T 1ccw_A 77 KCDEAGLE-GILLYVGGN 93 (137)
T ss_dssp HHHHTTCT-TCEEEEEES
T ss_pred HHHhcCCC-CCEEEEECC
Confidence 77777653 234555543
No 263
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=49.56 E-value=37 Score=33.13 Aligned_cols=81 Identities=6% Similarity=-0.011 Sum_probs=54.4
Q ss_pred cCCcEEEEEEEc-------CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcH
Q 003958 162 YGWREVIAIYVD-------DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRG 234 (784)
Q Consensus 162 ~~w~~v~ii~~d-------~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~ 234 (784)
-+-+.|+++..+ +.|.....+.+++.+++.|..+... ....+.......++.+...+.+.||+......
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~- 81 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMS---TGETEEEIFNGVVKMVQGRQIGGIILLYSREN- 81 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEEC---CCCSHHHHHHHHHHHHHTTCCCEEEESCCBTT-
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEE---eCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC-
Confidence 345678888866 4567778889999999999877642 21123344456777788889999998654322
Q ss_pred HHHHHHHHHcCC
Q 003958 235 PVVFHVAQYLGM 246 (784)
Q Consensus 235 ~~~~~~a~~~g~ 246 (784)
...++.+.+.|.
T Consensus 82 ~~~~~~l~~~~i 93 (292)
T 3k4h_A 82 DRIIQYLHEQNF 93 (292)
T ss_dssp CHHHHHHHHTTC
T ss_pred hHHHHHHHHCCC
Confidence 256677777664
No 264
>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich, DNA-binding, transcription regulation; HET: MES; 1.83A {Citrobacter freundii} PDB: 3kot_A
Probab=49.40 E-value=1.1e+02 Score=27.81 Aligned_cols=93 Identities=10% Similarity=-0.009 Sum_probs=53.1
Q ss_pred CChHhhhhCCCceEEeeCchHHHHHHhhcccC---ccCceeCCCHHHHHHHHhcCCcCCCeeEEEechhhhHHHHcCCCC
Q 003958 685 KGIDSLRSSNYPIGYQVNSFARNYLVDELNID---ESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCE 761 (784)
Q Consensus 685 ~~~~dl~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~c~ 761 (784)
-+++||.+... |....+.....++.+..... .......++.+...+.++. |...+++-+.....+.......
T Consensus 96 ~~~~~L~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----g~Gi~~lp~~~~~~~~~~~~l~ 170 (219)
T 3kos_A 96 QTPADILKFPL-LRSYRRDEWALWMQTVGEAPPSPTHNVMVFDSSVTMLEAAQA----GMGVAIAPVRMFTHLLSSERIV 170 (219)
T ss_dssp SSGGGGGGSCE-EEESCTTHHHHHHHHTTCCCCCTTSCEEEESCHHHHHHHHHT----TSCBEEEEGGGCHHHHHTTSSB
T ss_pred CCHHHHhcCce-eccCCccCHHHHHHHcCCCCCccccceeEEccHHHHHHHHHc----CCCeEeehHHhhHHHHHcCCee
Confidence 56788885433 45555665666664432211 1233567889999999998 5556777765544443333222
Q ss_pred eEEeCCccccceEEEEeeCCCC
Q 003958 762 FSIVGQVFTKNGWGFVSIVSSF 783 (784)
Q Consensus 762 l~~~~~~~~~~~~~~~~~k~s~ 783 (784)
. ..........++++.+++.+
T Consensus 171 ~-~~~~~~~~~~~~l~~~~~~~ 191 (219)
T 3kos_A 171 Q-PFLTQIDLGSYWITRLQSRP 191 (219)
T ss_dssp C-CCCCCBCSCEEEEEEETTSC
T ss_pred c-cccCCccCCcEEEEeccccc
Confidence 1 22223334467888887753
No 265
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=49.12 E-value=34 Score=34.06 Aligned_cols=80 Identities=11% Similarity=0.026 Sum_probs=54.2
Q ss_pred cEEEEEEE--cCCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccC-CcHHHHHHHH
Q 003958 165 REVIAIYV--DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY-NRGPVVFHVA 241 (784)
Q Consensus 165 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~-~~~~~~~~~a 241 (784)
++|+++.. ++.|.....+.+++.+++.|+.+.... +...+......+++.+...+.+.||+.... ..+...++++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~--~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~~~~a 81 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDG--PTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRA 81 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECC--CSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHHHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHhCCEEEEEC--CCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHH
Confidence 57888875 345667778888888888998776421 112344445567777777889998887543 4446778888
Q ss_pred HHcCC
Q 003958 242 QYLGM 246 (784)
Q Consensus 242 ~~~g~ 246 (784)
.+.|.
T Consensus 82 ~~~gi 86 (316)
T 1tjy_A 82 MQRGV 86 (316)
T ss_dssp HHTTC
T ss_pred HHCcC
Confidence 87664
No 266
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=49.06 E-value=2e+02 Score=28.02 Aligned_cols=68 Identities=13% Similarity=0.101 Sum_probs=44.6
Q ss_pred eeeHHHHHHHHHHC-CCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeEEeecCccccceeccccccccEEEEEe
Q 003958 494 GFCIDVFTAAINLL-PYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIITNRTKMADFTQPYIESGLVVVAP 572 (784)
Q Consensus 494 G~~~dl~~~l~~~l-~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~ 572 (784)
.+..+++..+.+.. +.+ +++.. +....++..|.+|++|+++...... ...+ -..++....+.++++
T Consensus 103 ~~l~~~l~~f~~~~P~v~--i~l~~-------~~~~~~~~~l~~g~~Dlai~~~~~~---~~~l-~~~~L~~~~~~~v~~ 169 (312)
T 2h9b_A 103 GLLPRIIHLYRQAHPNLR--IELYE-------MGTKAQTEALKEGRIDAGFGRLKIS---DPAI-KHSLLRNERLMVAVH 169 (312)
T ss_dssp TTHHHHHHHHHHTCTTCE--EEEEE-------CCHHHHHHHHHTTSCSEEEESSCCC---CTTE-EEEEEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHCCCcE--EEEEe-------CCHHHHHHHHHcCCCCEEEEeCCCC---CCCc-eEEEeecceEEEEEc
Confidence 45667788888776 444 55543 3577889999999999998643221 1122 235677777888876
Q ss_pred cc
Q 003958 573 VR 574 (784)
Q Consensus 573 ~~ 574 (784)
..
T Consensus 170 ~~ 171 (312)
T 2h9b_A 170 AS 171 (312)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 267
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=48.99 E-value=29 Score=33.97 Aligned_cols=86 Identities=8% Similarity=-0.029 Sum_probs=52.9
Q ss_pred HHHHHcCCcEEEEEEEc--CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcH
Q 003958 157 EIVDHYGWREVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRG 234 (784)
Q Consensus 157 ~~l~~~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~ 234 (784)
+-|+.-.-+.|+++..+ +.|.....+.+++.+++.|..+..... . .+.......++.+...+.+.||+.......
T Consensus 13 r~L~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgii~~~~~~~~ 89 (293)
T 2iks_A 13 AGLRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACS-E--DQPDNEMRCIEHLLQRQVDAIIVSTSLPPE 89 (293)
T ss_dssp -----CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC-T--TCHHHHHHHHHHHHHTTCSEEEECCSSCTT
T ss_pred HHhhcCCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEcC-C--CCHHHHHHHHHHHHHcCCCEEEEeCCCCCc
Confidence 33444455689998864 456677788899999999988765321 1 233444567777777889999887543322
Q ss_pred HHHHHHHHHcC
Q 003958 235 PVVFHVAQYLG 245 (784)
Q Consensus 235 ~~~~~~a~~~g 245 (784)
..+++.+.+.|
T Consensus 90 ~~~~~~~~~~~ 100 (293)
T 2iks_A 90 HPFYQRWANDP 100 (293)
T ss_dssp CHHHHTTTTSS
T ss_pred HHHHHHHHhCC
Confidence 33555554444
No 268
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=48.78 E-value=36 Score=32.76 Aligned_cols=80 Identities=3% Similarity=-0.032 Sum_probs=55.3
Q ss_pred EEEEEEEc--CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCC-ceEEEEecc-CCcHHHHHHHH
Q 003958 166 EVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTE-SRIIVVHTH-YNRGPVVFHVA 241 (784)
Q Consensus 166 ~v~ii~~d--~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~-~~vIvl~~~-~~~~~~~~~~a 241 (784)
+|+++..+ +.|.....+.+++.+++.|..+.....-. ..+.......++.+.+.+ .+.||+... .......++++
T Consensus 2 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~~~~~~ 80 (276)
T 3ksm_A 2 KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTKD-DGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVAQY 80 (276)
T ss_dssp EEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCCSS-TTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHHHH
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCC-CCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHHH
Confidence 57777753 56777888999999999998877543111 123444556777777777 999998754 34566778888
Q ss_pred HHcCC
Q 003958 242 QYLGM 246 (784)
Q Consensus 242 ~~~g~ 246 (784)
.+.|.
T Consensus 81 ~~~~i 85 (276)
T 3ksm_A 81 RARNI 85 (276)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 87664
No 269
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=48.64 E-value=11 Score=37.95 Aligned_cols=60 Identities=18% Similarity=0.155 Sum_probs=49.3
Q ss_pred cCCceeehhhhhhhhhccc--ccccc--cchhhHHHHHHHHHHHHHHhhccccceeeEeecccc
Q 003958 622 KRQVVTIFWFSFSTMFFAH--KEKTV--SALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLS 681 (784)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~--~~~p~--~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~ 681 (784)
..++.+++||++.++..-| ...|. +..+|+++.+-.+.++++.+.-++-+.+-+..++..
T Consensus 89 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 152 (340)
T 3sya_A 89 LNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKR 152 (340)
T ss_dssp CCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGG
T ss_pred ccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 3568899999999998554 44674 678999999999999999999999888888766543
No 270
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=48.52 E-value=97 Score=30.33 Aligned_cols=39 Identities=15% Similarity=0.186 Sum_probs=25.7
Q ss_pred HHHHHHhcCceEEEccCchhhHHHHHHhhhcCCccEEec
Q 003958 88 EALHLMEGQTVAIIGPQDAVTSHVVSHVANELQVPLLSF 126 (784)
Q Consensus 88 ~~~~li~~~v~aiiGp~~s~~~~~va~~~~~~~ip~Is~ 126 (784)
.+..+.+.++.+|+-+.++..+..+..+-+..++|+|..
T Consensus 76 ~~~~L~~~g~d~IVIaCNTas~~~l~~lr~~~~iPVigi 114 (286)
T 2jfq_A 76 IARKLMEFDIKMLVIACNTATAVALEYLQKTLSISVIGV 114 (286)
T ss_dssp HHHHHTTSCCSEEEECCHHHHHHHHHHHHHHCSSEEEES
T ss_pred HHHHHHHCCCCEEEEeCCchhHHHHHHHHHhCCCCEEec
Confidence 334444558998887555555445666667789999974
No 271
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=48.50 E-value=1.1e+02 Score=24.89 Aligned_cols=57 Identities=11% Similarity=0.110 Sum_probs=39.6
Q ss_pred hhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEecc--CCcHHHHHHHHHHc
Q 003958 179 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH--YNRGPVVFHVAQYL 244 (784)
Q Consensus 179 ~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~--~~~~~~~~~~a~~~ 244 (784)
...+.+++.+++.|..+... . + ....+..+++..+++|++... ..+...++++.++.
T Consensus 14 ~~~~~l~~~L~~~g~~v~~~---~---~---~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~ 72 (127)
T 3i42_A 14 AAAETFKELLEMLGFQADYV---M---S---GTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRAL 72 (127)
T ss_dssp HHHHHHHHHHHHTTEEEEEE---S---S---HHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCCEEEE---C---C---HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 35677888888888765432 1 2 335566666678999999744 45677888888886
No 272
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=48.33 E-value=43 Score=32.56 Aligned_cols=40 Identities=13% Similarity=0.099 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCceEEEccCchhhHHHHHHhhhcCCccEEec
Q 003958 86 LAEALHLMEGQTVAIIGPQDAVTSHVVSHVANELQVPLLSF 126 (784)
Q Consensus 86 ~~~~~~li~~~v~aiiGp~~s~~~~~va~~~~~~~ip~Is~ 126 (784)
.+.+..|.+.++.+|+-+.++... .+..+-+..++|+|..
T Consensus 89 ~~~~~~L~~~Gad~IVIaCNTah~-~l~~lr~~~~iPvigi 128 (268)
T 3s81_A 89 ERYLHMLEDAGAECIVIPCNTAHY-WFDDLQNVAKARMISI 128 (268)
T ss_dssp HHHHHHHHHTTCSEEECSCSGGGG-GHHHHHHHCSSEEECH
T ss_pred HHHHHHHHHcCCCEEEEeCCCHHH-HHHHHHHHCCCCEEcc
Confidence 344555666699999876655443 4556667779999974
No 273
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=48.30 E-value=48 Score=32.16 Aligned_cols=79 Identities=3% Similarity=-0.037 Sum_probs=51.8
Q ss_pred cEEEEEEEc--CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccC-CcHHHHHHHH
Q 003958 165 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY-NRGPVVFHVA 241 (784)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~-~~~~~~~~~a 241 (784)
+.|+++..+ +.|.....+.+++.+++.|..+.....- .+...-...++.+...+.|.||+.... +.....++.+
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~~---~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 78 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKELGYKIIVEDSQ---NDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIKEA 78 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECT---TCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHH
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhcCcEEEEecCC---CCHHHHHHHHHHHHHcCCCEEEEeCCchhhhHHHHHHH
Confidence 367888754 4566777888888898899887653211 233334456777777889998886433 3334567777
Q ss_pred HHcCC
Q 003958 242 QYLGM 246 (784)
Q Consensus 242 ~~~g~ 246 (784)
.+.|.
T Consensus 79 ~~~~i 83 (283)
T 2ioy_A 79 NSKNI 83 (283)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77664
No 274
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=48.30 E-value=55 Score=33.14 Aligned_cols=86 Identities=9% Similarity=0.005 Sum_probs=54.0
Q ss_pred HHHHHcCCcEEEEEEEc--CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcH
Q 003958 157 EIVDHYGWREVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRG 234 (784)
Q Consensus 157 ~~l~~~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~ 234 (784)
.-|+.-.-+.|+++..+ +.|.....+.+++.+++.|..+.....- .+.......++.+...+.+.||+......
T Consensus 63 ~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdGiI~~~~~~~- 138 (355)
T 3e3m_A 63 GSLTTKRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYTA---YSPEREEQLVETMLRRRPEAMVLSYDGHT- 138 (355)
T ss_dssp --------CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEECT---TCHHHHHHHHHHHHHTCCSEEEEECSCCC-
T ss_pred HhhhcCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCC---CChHHHHHHHHHHHhCCCCEEEEeCCCCC-
Confidence 33444445679999864 4566677889999999999887654221 23444556777777788999998754433
Q ss_pred HHHHHHHHHcCC
Q 003958 235 PVVFHVAQYLGM 246 (784)
Q Consensus 235 ~~~~~~a~~~g~ 246 (784)
...++.+.+.|.
T Consensus 139 ~~~~~~l~~~~i 150 (355)
T 3e3m_A 139 EQTIRLLQRASI 150 (355)
T ss_dssp HHHHHHHHHCCS
T ss_pred HHHHHHHHhCCC
Confidence 355666776664
No 275
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=48.13 E-value=97 Score=30.20 Aligned_cols=40 Identities=13% Similarity=0.302 Sum_probs=28.2
Q ss_pred HHHHHHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEee
Q 003958 497 IDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGD 545 (784)
Q Consensus 497 ~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~ 545 (784)
..+.+.+-+.+|+++++ .. +.-.-+...|.+|++|+....
T Consensus 32 ~~i~~~~Le~~G~~Ve~--~~-------~~~~~~~~AL~~G~iD~~~e~ 71 (280)
T 3tmg_A 32 TNVLKVVFEKMGYNAEI--FS-------VTTSIMYQYLASGKIDGTVSS 71 (280)
T ss_dssp HHHHHHHHHHTTEEEEE--EE-------CCHHHHHHHHHTTSSSEEEEE
T ss_pred HHHHHHHHHHCCCceEE--EE-------CCcHHHHHHHHCCCCcEEEec
Confidence 45666666778988555 33 234567899999999998754
No 276
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=47.99 E-value=55 Score=31.88 Aligned_cols=79 Identities=11% Similarity=-0.067 Sum_probs=52.9
Q ss_pred CcEEEEEEEc--CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHH
Q 003958 164 WREVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVA 241 (784)
Q Consensus 164 w~~v~ii~~d--~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a 241 (784)
-+.|+++..+ +.|.....+.+++.+++.|..+..... . .+.......++.+...+.|.||+...... ...++++
T Consensus 16 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~l 91 (289)
T 2fep_A 16 TTTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNS-D--QNMEKELHLLNTMLGKQVDGIVFMGGNIT-DEHVAEF 91 (289)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-T--TCHHHHHHHHHHHHHTTCSEEEECCSCCC-HHHHHHH
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeC-C--CCHHHHHHHHHHHHhCCCCEEEEecCCCC-HHHHHHH
Confidence 3578888864 556677788899999999988765321 1 23444556777777788999988754322 3456666
Q ss_pred HHcCC
Q 003958 242 QYLGM 246 (784)
Q Consensus 242 ~~~g~ 246 (784)
.+.+.
T Consensus 92 ~~~~i 96 (289)
T 2fep_A 92 KRSPV 96 (289)
T ss_dssp HHSSS
T ss_pred HhcCC
Confidence 66553
No 277
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=47.92 E-value=25 Score=35.84 Aligned_cols=81 Identities=9% Similarity=0.064 Sum_probs=55.1
Q ss_pred HHHHHHHHcCCcEEEEEEEcCCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccC--
Q 003958 154 AIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY-- 231 (784)
Q Consensus 154 ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~-- 231 (784)
.+.++++.++.+++.||++.... ...+.+.+.+++.++.+ .....++...+.....++.+++.++|+||-.+.+
T Consensus 24 ~l~~~l~~~g~~r~liVtd~~~~--~~~~~v~~~L~~~~~~v--~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~ 99 (353)
T 3hl0_A 24 DVAEEIRRLGLSRALVLSTPQQK--GDAEALASRLGRLAAGV--FSEAAMHTPVEVTKTAVEAYRAAGADCVVSLGGGST 99 (353)
T ss_dssp GHHHHHHHTTCCCEEEECCGGGH--HHHHHHHHHHGGGEEEE--ECCCCTTCBHHHHHHHHHHHHHTTCSEEEEEESHHH
T ss_pred HHHHHHHHhCCCEEEEEecCchh--hHHHHHHHHHhhCCcEE--ecCcCCCCcHHHHHHHHHHHhccCCCEEEEeCCcHH
Confidence 46778888999999999865543 35778888888766433 2223333455677788888888999998877543
Q ss_pred CcHHHHH
Q 003958 232 NRGPVVF 238 (784)
Q Consensus 232 ~~~~~~~ 238 (784)
-++..++
T Consensus 100 iD~aK~i 106 (353)
T 3hl0_A 100 TGLGKAI 106 (353)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444444
No 278
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=47.90 E-value=1.1e+02 Score=30.02 Aligned_cols=36 Identities=6% Similarity=0.152 Sum_probs=24.5
Q ss_pred HHHh-cCceEEEccCchhhHHHHHHhhhcCCccEEec
Q 003958 91 HLME-GQTVAIIGPQDAVTSHVVSHVANELQVPLLSF 126 (784)
Q Consensus 91 ~li~-~~v~aiiGp~~s~~~~~va~~~~~~~ip~Is~ 126 (784)
.++. .++.+|+-+.++.++..+..+-+..++|+|..
T Consensus 78 ~ll~~~g~d~IviaCNTas~~~l~~lr~~~~iPVigi 114 (285)
T 2jfn_A 78 AVQERYPLALAVVACNTASTVSLPALREKFDFPVVGV 114 (285)
T ss_dssp HHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEECC
T ss_pred HHHHhCCCCEEEEECccccHHHHHHHHHhCCCCEEeh
Confidence 3444 48988887555555446666667789999973
No 279
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=47.81 E-value=29 Score=34.25 Aligned_cols=87 Identities=6% Similarity=0.017 Sum_probs=54.6
Q ss_pred HHHHHHcCCcEEEEEEEc-------CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEe
Q 003958 156 AEIVDHYGWREVIAIYVD-------DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVH 228 (784)
Q Consensus 156 ~~~l~~~~w~~v~ii~~d-------~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~ 228 (784)
++-|+.-.-+.|+++..+ +.|.....+.+++.+++.|..+... ....+......+++.+...+.+.||+.
T Consensus 14 Ar~L~~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~~~~~~~~~~~~~l~~~~vdgiIi~ 90 (305)
T 3huu_A 14 ARTLITNKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMT---VSENSGDLYHEVKTMIQSKSVDGFILL 90 (305)
T ss_dssp -------CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEEC---CCSSHHHHHHHHHHHHHTTCCSEEEES
T ss_pred HHHhhhCCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEE---eCCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 344455556789999866 4566777889999999999887642 211233344567777888899999987
Q ss_pred ccCCcHHHHHHHHHHcCC
Q 003958 229 THYNRGPVVFHVAQYLGM 246 (784)
Q Consensus 229 ~~~~~~~~~~~~a~~~g~ 246 (784)
..... ...++.+.+.|.
T Consensus 91 ~~~~~-~~~~~~l~~~~i 107 (305)
T 3huu_A 91 YSLKD-DPIEHLLNEFKV 107 (305)
T ss_dssp SCBTT-CHHHHHHHHTTC
T ss_pred CCcCC-cHHHHHHHHcCC
Confidence 54322 256667766664
No 280
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=47.68 E-value=75 Score=30.47 Aligned_cols=127 Identities=11% Similarity=0.064 Sum_probs=67.2
Q ss_pred HHHHHHHHhcCceEEEccCchhhHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCc
Q 003958 86 LAEALHLMEGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWR 165 (784)
Q Consensus 86 ~~~~~~li~~~v~aiiGp~~s~~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~ 165 (784)
.+.+..+.+.++.+|+-+.++.++..+..+-+..++|+|... + .++...++..+-+
T Consensus 52 ~~~~~~L~~~g~d~iviaCnTa~~~~~~~lr~~~~iPvigi~---------------------e---~~~~~A~~~~~~~ 107 (254)
T 1b73_A 52 LECAGFLKDKGVDIIVVACNTASAYALERLKKEINVPVFGVI---------------------E---PGVKEALKKSRNK 107 (254)
T ss_dssp HHHHHHHHTTTCSEEEECCHHHHTTSHHHHHHHSSSCEEESH---------------------H---HHHHHHHHHCSSC
T ss_pred HHHHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEeee---------------------H---HHHHHHHHccCCC
Confidence 334444555699998875555443345556666789988731 0 1122223345678
Q ss_pred EEEEEEEcCCCcchhHHHHHHHHhccCcEEEEee--ccCCC--C---C----hhHHHHHHHHhhcCCceEEEEeccC-Cc
Q 003958 166 EVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKA--PLSVE--A---T----EDEITDLLVKVALTESRIIVVHTHY-NR 233 (784)
Q Consensus 166 ~v~ii~~d~~~g~~~~~~l~~~l~~~gi~v~~~~--~~~~~--~---~----~~d~~~~l~~l~~~~~~vIvl~~~~-~~ 233 (784)
+|+++......- ....++.+++.|+.+.... .+-.. . + ...+...++.+.+. +++||+.|.. ..
T Consensus 108 rigVlaT~~T~~---~~~y~~~l~~~g~~v~~~~~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~-~d~IILGCT~~p~ 183 (254)
T 1b73_A 108 KIGVIGTPATVK---SGAYQRKLEEGGADVFAKACPLFAPLAEEGLLEGEITRKVVEHYLKEFKGK-IDTLILGCTHYPL 183 (254)
T ss_dssp EEEEEECHHHHH---HCHHHHHHHTTSCEEEEEECCCCTTTSCGGGGSGGGHHHHHHHHSTTTTTT-CSEEEECCCCTTC
T ss_pred EEEEEEChHHhh---hHHHHHHHHcCCCEEEecCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHhc-CCEEEECccChHH
Confidence 999998654321 1234455556787764211 11110 0 1 12334444445445 9999997664 44
Q ss_pred HHHHHHH
Q 003958 234 GPVVFHV 240 (784)
Q Consensus 234 ~~~~~~~ 240 (784)
+...+++
T Consensus 184 l~~~i~~ 190 (254)
T 1b73_A 184 LKKEIKK 190 (254)
T ss_dssp CHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 281
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=47.50 E-value=48 Score=29.36 Aligned_cols=63 Identities=16% Similarity=0.094 Sum_probs=44.9
Q ss_pred EEEEEEEcCC-----CcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcC-CceEEEEecc
Q 003958 166 EVIAIYVDDD-----HGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT-ESRIIVVHTH 230 (784)
Q Consensus 166 ~v~ii~~d~~-----~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~-~~~vIvl~~~ 230 (784)
+++||...|+ .-......+.+.+++.|..+.....++ .+...+...+++..+. ++|+||..+.
T Consensus 3 ~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~--Dd~~~i~~~l~~~~~~~~~DlVittGG 71 (164)
T 2is8_A 3 RVGILTVSDKGFRGERQDTTHLAIREVLAGGPFEVAAYELVP--DEPPMIKKVLRLWADREGLDLILTNGG 71 (164)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHTTSSEEEEEEEEEC--SCHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred EEEEEEEcCcccCCCcccchHHHHHHHHHHCCCeEeEEEEcC--CCHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 5777775443 112345678888999999888777777 4567788888877654 7899998744
No 282
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=47.16 E-value=59 Score=31.32 Aligned_cols=116 Identities=15% Similarity=0.074 Sum_probs=69.3
Q ss_pred EEEEEeecCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc--CceEEEccCchhhHH
Q 003958 33 NIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG--QTVAIIGPQDAVTSH 110 (784)
Q Consensus 33 ~IG~i~~~~~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~--~v~aiiGp~~s~~~~ 110 (784)
+|+++...... ...-..|+.-|+++.+ .++...+.....+...+.+.+.+++.+ .+.+|+... ...+.
T Consensus 120 ~i~~i~~~~~~-~~~R~~gf~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~-d~~a~ 189 (280)
T 3gyb_A 120 HIAHLRVGSGA-GLRRFESFEATMRAHG--------LEPLSNDYLGPAVEHAGYTETLALLKEHPEVTAIFSSN-DITAI 189 (280)
T ss_dssp SEEEECCSSHH-HHHHHHHHHHHHHHTT--------CCCEECCCCSCCCHHHHHHHHHHHHHHCTTCCEEEESS-HHHHH
T ss_pred eEEEEeCCCch-HHHHHHHHHHHHHHcC--------cCCCcccccCCCCHHHHHHHHHHHHhCCCCCCEEEECC-hHHHH
Confidence 57777766543 4556678888887742 122222244556788888888888876 588999754 33444
Q ss_pred HHHHhhhcC------CccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHH
Q 003958 111 VVSHVANEL------QVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVD 160 (784)
Q Consensus 111 ~va~~~~~~------~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~ 160 (784)
.+...+... ++.++++.... +.....|.+.....+...++...+++|.
T Consensus 190 g~~~al~~~g~~vP~di~vvg~d~~~--~~~~~~p~lttv~~~~~~~g~~av~~l~ 243 (280)
T 3gyb_A 190 GALGAARELGLRVPEDLSIIGYDNTP--LAQTRLINLTTIDDNSIGVGYNAALLLL 243 (280)
T ss_dssp HHHHHHHHHTCCTTTTCEEEEESCCH--HHHSTTTCCCEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCeeEEEEECCch--HhhccCCCceEEecCHHHHHHHHHHHHH
Confidence 444444444 34467664332 2222235555566677777777777654
No 283
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=47.00 E-value=5.6 Score=38.98 Aligned_cols=56 Identities=13% Similarity=0.218 Sum_probs=46.8
Q ss_pred cCCceeehhhhhhhhhcc--cccccccchhhHHHHHHHHHHHHHHhhccccceeeEee
Q 003958 622 KRQVVTIFWFSFSTMFFA--HKEKTVSALGRLVLIIWLFVVLIINSSYTASLTSILTV 677 (784)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~--~~~~p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~ 677 (784)
..++.+++|+++.++..- |.-.|.+..+|++++++.++++.+...+.+++...+..
T Consensus 91 ~w~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~ 148 (280)
T 3ukm_A 91 NWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITV 148 (280)
T ss_dssp CSSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446889999999999755 45689999999999999999999988888887765544
No 284
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=46.95 E-value=1.2e+02 Score=29.47 Aligned_cols=41 Identities=10% Similarity=0.201 Sum_probs=28.1
Q ss_pred HHHHHHHHh-cCceEEEccCchhhHHHHHHhhhcCCccEEec
Q 003958 86 LAEALHLME-GQTVAIIGPQDAVTSHVVSHVANELQVPLLSF 126 (784)
Q Consensus 86 ~~~~~~li~-~~v~aiiGp~~s~~~~~va~~~~~~~ip~Is~ 126 (784)
.+.+..+.+ +++.+|+-+-++.++..+..+-+..++|+|..
T Consensus 55 ~~~~~~L~~~~g~d~iViACNTas~~~l~~lr~~~~iPVigi 96 (272)
T 1zuw_A 55 WELTNYLLENHHIKMLVIACNTATAIALDDIQRSVGIPVVGV 96 (272)
T ss_dssp HHHHHHHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEEES
T ss_pred HHHHHHHHhhcCCCEEEEeCchhhHHHHHHHHHHCCCCEEcc
Confidence 344555667 78998887555555445666667789999973
No 285
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=46.95 E-value=31 Score=33.76 Aligned_cols=80 Identities=5% Similarity=-0.140 Sum_probs=54.4
Q ss_pred cCCcEEEEEEEc--CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHH
Q 003958 162 YGWREVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFH 239 (784)
Q Consensus 162 ~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~ 239 (784)
-+-+.|+++..+ +.|.....+.+++.+++.|..+.....- .+.......++.+...+.+.||+..... ....++
T Consensus 6 ~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~~~~ 81 (291)
T 3egc_A 6 KRSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTA---EDIVREREAVGQFFERRVDGLILAPSEG-EHDYLR 81 (291)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECT---TCHHHHHHHHHHHHHTTCSEEEECCCSS-CCHHHH
T ss_pred CCCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCC---CCHHHHHHHHHHHHHCCCCEEEEeCCCC-ChHHHH
Confidence 344678888864 4566677889999999999887754321 2445556777888888999999876543 345565
Q ss_pred HHHHcC
Q 003958 240 VAQYLG 245 (784)
Q Consensus 240 ~a~~~g 245 (784)
.+.+.|
T Consensus 82 ~~~~~~ 87 (291)
T 3egc_A 82 TELPKT 87 (291)
T ss_dssp HSSCTT
T ss_pred HhhccC
Confidence 655544
No 286
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=46.46 E-value=58 Score=31.93 Aligned_cols=79 Identities=8% Similarity=0.021 Sum_probs=52.7
Q ss_pred cEEEEEEEc--CCCcchhHHHHHHHHhccCc-EEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCc-HHHHHHH
Q 003958 165 REVIAIYVD--DDHGRNGIAALGDTLAAKRC-RISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNR-GPVVFHV 240 (784)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~gi-~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~-~~~~~~~ 240 (784)
++|+++..+ +.|.....+.+++.+++.|. .+..... ..+.......++.+...+.+.||+...... ....+++
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~ 79 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDS---QNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEK 79 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhcCCeEEEEecC---CCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHHHH
Confidence 468888753 45667778899999999996 7654321 123444456677777788999888754333 4566777
Q ss_pred HHHcCC
Q 003958 241 AQYLGM 246 (784)
Q Consensus 241 a~~~g~ 246 (784)
+.+.|.
T Consensus 80 ~~~~~i 85 (309)
T 2fvy_A 80 ARGQNV 85 (309)
T ss_dssp HHTTTC
T ss_pred HHHCCC
Confidence 776553
No 287
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=46.41 E-value=60 Score=31.18 Aligned_cols=79 Identities=3% Similarity=-0.018 Sum_probs=52.3
Q ss_pred cEEEEEEEc--CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccC-CcHHHHHHHH
Q 003958 165 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY-NRGPVVFHVA 241 (784)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~-~~~~~~~~~a 241 (784)
+.|+++..+ +.|.....+.+++.+++.|..+..... . .+...-...++.+...+.|.||+.... +.....++++
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~-~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 78 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS-Q--NNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMA 78 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC-T--TCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHcCcEEEEeCC-C--CCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHH
Confidence 468888754 556677788899999999987765321 1 233334556777777889999886433 3334567777
Q ss_pred HHcCC
Q 003958 242 QYLGM 246 (784)
Q Consensus 242 ~~~g~ 246 (784)
.+.|.
T Consensus 79 ~~~~i 83 (271)
T 2dri_A 79 NQANI 83 (271)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 76653
No 288
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=46.11 E-value=93 Score=31.14 Aligned_cols=78 Identities=6% Similarity=-0.017 Sum_probs=54.7
Q ss_pred cEEEEEEEc--CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHHH
Q 003958 165 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQ 242 (784)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a~ 242 (784)
+.|+++..+ +.|.....+.+++.+++.|..+.....- .+.......++.+...+.|.||+....... ..++.+.
T Consensus 69 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~-~~~~~l~ 144 (344)
T 3kjx_A 69 NLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVTD---YLPEKEEKVLYEMLSWRPSGVIIAGLEHSE-AARAMLD 144 (344)
T ss_dssp SEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEECT---TCHHHHHHHHHHHHTTCCSEEEEECSCCCH-HHHHHHH
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeCC---CCHHHHHHHHHHHHhCCCCEEEEECCCCCH-HHHHHHH
Confidence 478888854 5677788899999999999887643221 244445667778888889999987544332 5666677
Q ss_pred HcCC
Q 003958 243 YLGM 246 (784)
Q Consensus 243 ~~g~ 246 (784)
+.|.
T Consensus 145 ~~~i 148 (344)
T 3kjx_A 145 AAGI 148 (344)
T ss_dssp HCSS
T ss_pred hCCC
Confidence 6654
No 289
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=45.80 E-value=99 Score=30.37 Aligned_cols=68 Identities=13% Similarity=0.067 Sum_probs=42.2
Q ss_pred eeeHHHHHHHHHHC-CCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeEEeecCccccceeccccccccEEEEEe
Q 003958 494 GFCIDVFTAAINLL-PYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIITNRTKMADFTQPYIESGLVVVAP 572 (784)
Q Consensus 494 G~~~dl~~~l~~~l-~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~ 572 (784)
.+...++..+.+.. +.+ +++.. +....++..|.+|++|+++..... ....+. ..|+....++++++
T Consensus 118 ~~l~~~l~~f~~~~P~v~--l~l~~-------~~~~~~~~~l~~g~~Dl~i~~~~~---~~~~l~-~~~l~~~~~~~v~~ 184 (315)
T 1uth_A 118 YFMPPLMEALAQRAPHIQ--ISTLR-------PNAGNLKEDMESGAVDLALGLLPE---LQTGFF-QRRLFRHRYVCMFR 184 (315)
T ss_dssp HHHHHHHHHHHHHCTTCE--EEEEC-------TTSSCHHHHHHHTSCCEEEECCTT---CCTTEE-EEEEEEECEEEEEE
T ss_pred HHHHHHHHHHHHHCCCcE--EEEEe-------CCcccHHHHHHCCCCCEEEecCCC---CCCCce-EEEeeccceEEEEe
Confidence 34566777777776 344 55543 345578999999999999854221 112222 34667777777776
Q ss_pred cc
Q 003958 573 VR 574 (784)
Q Consensus 573 ~~ 574 (784)
..
T Consensus 185 ~~ 186 (315)
T 1uth_A 185 KD 186 (315)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 290
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=45.63 E-value=43 Score=30.39 Aligned_cols=65 Identities=14% Similarity=0.140 Sum_probs=46.2
Q ss_pred CcEEEEEEEcCCC----cchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEecc
Q 003958 164 WREVIAIYVDDDH----GRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH 230 (784)
Q Consensus 164 w~~v~ii~~d~~~----g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~ 230 (784)
--+++||...|+- -......+.+.+++.|..+.....++ .+...+...+++....++|+||..+.
T Consensus 30 ~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~--Dd~~~I~~al~~a~~~~~DlVIttGG 98 (185)
T 3rfq_A 30 VGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVE--ADEVDIRNALNTAVIGGVDLVVSVGG 98 (185)
T ss_dssp CEEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEEC--SCHHHHHHHHHHHHHTTCSEEEEESC
T ss_pred CCEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeC--CCHHHHHHHHHHHHhCCCCEEEECCC
Confidence 3568888765431 23456778888999999988877777 45667777777765467899998743
No 291
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=44.90 E-value=64 Score=32.22 Aligned_cols=84 Identities=7% Similarity=-0.087 Sum_probs=53.0
Q ss_pred HHHcCCcEEEEEEEc--CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHH
Q 003958 159 VDHYGWREVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPV 236 (784)
Q Consensus 159 l~~~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~ 236 (784)
|+.-.-+.|+++..+ +.|.....+.+++.+++.|..+..... . .+.......++.+...+.+.||+...... ..
T Consensus 58 l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~ 133 (332)
T 2o20_A 58 LASKRTTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILANS-D--NDVEKEEKVLETFLSKQVDGIVYMGSSLD-EK 133 (332)
T ss_dssp ----CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEEC-T--TCHHHHHHHHHHHHHTTCSEEEECSSCCC-HH
T ss_pred HhcCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEEC-C--CChHHHHHHHHHHHhCCCCEEEEeCCCCC-HH
Confidence 333445679999864 556677788999999999988765321 1 23344456777777788999988754322 23
Q ss_pred HHHHHHHcCC
Q 003958 237 VFHVAQYLGM 246 (784)
Q Consensus 237 ~~~~a~~~g~ 246 (784)
.++.+.+.+.
T Consensus 134 ~~~~l~~~~i 143 (332)
T 2o20_A 134 IRTSLKNSRT 143 (332)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHhCCC
Confidence 4555555453
No 292
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=44.44 E-value=57 Score=32.19 Aligned_cols=79 Identities=9% Similarity=-0.075 Sum_probs=51.6
Q ss_pred EEEEEEEcCC-CcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEecc-CCcHHHHHHHHHH
Q 003958 166 EVIAIYVDDD-HGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH-YNRGPVVFHVAQY 243 (784)
Q Consensus 166 ~v~ii~~d~~-~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~-~~~~~~~~~~a~~ 243 (784)
+|+++..+.. |.....+.+++.+++.|..+.... +...+.......++.+...+.+.||+... .......++++.+
T Consensus 3 ~Ig~i~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~--~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~ 80 (313)
T 2h3h_A 3 TIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKFFV--PQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKALE 80 (313)
T ss_dssp EEEEECSCSSHHHHHHHHHHHHHHHHHTCEEEEEC--CSSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHH
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHcCCEEEEEC--CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHH
Confidence 5777775322 667778888888888998876532 11123444556777777788999888644 3344566777777
Q ss_pred cCC
Q 003958 244 LGM 246 (784)
Q Consensus 244 ~g~ 246 (784)
.|.
T Consensus 81 ~~i 83 (313)
T 2h3h_A 81 MGI 83 (313)
T ss_dssp TTC
T ss_pred CCC
Confidence 663
No 293
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=44.15 E-value=1.4e+02 Score=26.20 Aligned_cols=86 Identities=10% Similarity=0.041 Sum_probs=56.8
Q ss_pred CcEEEEEEEcCCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccC----CcHHHHHH
Q 003958 164 WREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY----NRGPVVFH 239 (784)
Q Consensus 164 w~~v~ii~~d~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~----~~~~~~~~ 239 (784)
-.+|.+.....+.-.-....+...|+..|++|..-... .....++..+++.++++|.+.+.. ..+..+++
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~------~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~ 91 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLR------QTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMA 91 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSB------CCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCC------CCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHH
Confidence 35666666666655666778888899999998743211 124466777788899999998654 34566777
Q ss_pred HHHHcCCCCCCeEEEec
Q 003958 240 VAQYLGMLGTGYVWIAT 256 (784)
Q Consensus 240 ~a~~~g~~~~~~~wi~~ 256 (784)
++++.|.. .-.+|++.
T Consensus 92 ~L~~~g~~-~i~v~vGG 107 (161)
T 2yxb_A 92 KLRELGAD-DIPVVLGG 107 (161)
T ss_dssp HHHHTTCT-TSCEEEEE
T ss_pred HHHhcCCC-CCEEEEeC
Confidence 77776652 23355554
No 294
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=43.16 E-value=2e+02 Score=28.45 Aligned_cols=57 Identities=14% Similarity=-0.052 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHhcCCcCCCeeEEEechhhhHHHHcCCCCeEEeCC--ccccceEEEEeeCCCC
Q 003958 723 LNSPEEYAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVGQ--VFTKNGWGFVSIVSSF 783 (784)
Q Consensus 723 ~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~c~l~~~~~--~~~~~~~~~~~~k~s~ 783 (784)
..+..+..+.+.+ |+..+.+.....+..+.+..-++..+-. .-.....+++++++++
T Consensus 216 ~~~~~~~~~~f~~----G~~a~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~s~ 274 (351)
T 4edp_A 216 YSKSSDLANMFSN----GEIVAAVASDFAFGTISKAKPEVINVIPESGTYLNFNTININKNSK 274 (351)
T ss_dssp ECCHHHHHHHHHT----TSCSEEEEEHHHHHHHHHHCTTCEEECCTTCCBEEEEEEEEBTTCS
T ss_pred cCChHHHHHHHHc----CCEEEEecCcHHHHHHHhcCCCeeeeCCCCCcccceeeEEEECCCC
Confidence 3566788888988 7887777765555555444444433311 1223346899999886
No 295
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=43.04 E-value=29 Score=31.60 Aligned_cols=66 Identities=11% Similarity=-0.003 Sum_probs=39.4
Q ss_pred eeeHHHHHHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeEEeecCccccceeccccccccEEEEEec
Q 003958 494 GFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIITNRTKMADFTQPYIESGLVVVAPV 573 (784)
Q Consensus 494 G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~ 573 (784)
.+..+++..+.++.- .+++++... . .+..|.+|++|+++....... ..+ -+.++....+++++++
T Consensus 20 ~~l~~~l~~f~~~~P-~v~l~i~~~------~----~~~~l~~g~~D~~i~~~~~~~---~~~-~~~~l~~~~~~~v~~~ 84 (213)
T 3hhf_B 20 HLLAPLAAKFNERYP-HIRLSLVSS------E----GYINLIERKVDIALRAGELDD---SGL-RARHLFDSRFRVIASP 84 (213)
T ss_dssp HTHHHHHHHHHHHCT-TEEEEEECC------S----TTHHHHTTSSSEEEECC--CC---SSE-EEEEEEEECEEEEECH
T ss_pred HHHHHHHHHHHHHCC-CcEEEEEeC------C----cHHHHHhCCccEEEEEecCCC---ccc-eEEeeecceEEEEeCH
Confidence 356678888887762 233544421 1 134588999999986543222 222 2456778888888865
Q ss_pred c
Q 003958 574 R 574 (784)
Q Consensus 574 ~ 574 (784)
.
T Consensus 85 ~ 85 (213)
T 3hhf_B 85 E 85 (213)
T ss_dssp H
T ss_pred H
Confidence 4
No 296
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=42.96 E-value=66 Score=32.19 Aligned_cols=81 Identities=11% Similarity=0.067 Sum_probs=51.5
Q ss_pred cEEEEEEEc---CCCcchhHHHHHHHHhccCcEEEEeeccCC-CCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHH
Q 003958 165 REVIAIYVD---DDHGRNGIAALGDTLAAKRCRISFKAPLSV-EATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHV 240 (784)
Q Consensus 165 ~~v~ii~~d---~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~-~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~ 240 (784)
+.|+++..+ +.|.....+.+++.+++.|..+.....-.. ..+.......++.+...+.+.||+..........+++
T Consensus 44 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 123 (342)
T 1jx6_A 44 IKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEH 123 (342)
T ss_dssp EEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEECCSSSTTHHHHHH
T ss_pred eEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEeCChHhHHHHHHH
Confidence 468888765 566677788899999999976554321111 0133344566777777789999884433333566677
Q ss_pred HHHcC
Q 003958 241 AQYLG 245 (784)
Q Consensus 241 a~~~g 245 (784)
+.+.|
T Consensus 124 ~~~~~ 128 (342)
T 1jx6_A 124 VLDST 128 (342)
T ss_dssp HHHHC
T ss_pred HHHcC
Confidence 76655
No 297
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=42.05 E-value=58 Score=31.63 Aligned_cols=82 Identities=4% Similarity=0.028 Sum_probs=51.6
Q ss_pred HcCCcEEEEEEEc--C--CCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHH
Q 003958 161 HYGWREVIAIYVD--D--DHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPV 236 (784)
Q Consensus 161 ~~~w~~v~ii~~d--~--~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~ 236 (784)
.-+-+.|+++..+ + .|.....+.+++.+++.|..+.....-. +......+.+.+...+.+.||+...... ..
T Consensus 5 ~~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~---~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~ 80 (288)
T 3gv0_A 5 TGKTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHIH---AKDSMVPIRYILETGSADGVIISKIEPN-DP 80 (288)
T ss_dssp --CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBSS---GGGTTHHHHHHHHHTCCSEEEEESCCTT-CH
T ss_pred cCCCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCCc---chhHHHHHHHHHHcCCccEEEEecCCCC-cH
Confidence 3345678988875 2 6777888999999999998876543221 2222334445566678899888743322 25
Q ss_pred HHHHHHHcCC
Q 003958 237 VFHVAQYLGM 246 (784)
Q Consensus 237 ~~~~a~~~g~ 246 (784)
.++.+.+.|.
T Consensus 81 ~~~~l~~~~i 90 (288)
T 3gv0_A 81 RVRFMTERNM 90 (288)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHhhCCC
Confidence 5667776654
No 298
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=41.98 E-value=33 Score=35.07 Aligned_cols=82 Identities=10% Similarity=0.116 Sum_probs=55.0
Q ss_pred HHHHHHHHHcCCcEEEEEEEcCCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccC-
Q 003958 153 AAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY- 231 (784)
Q Consensus 153 ~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~- 231 (784)
..+.++++.++.+++.||++.... ...+.+.+.+++.++.+ + ....++...+.....++.+++.++|+||-.+.+
T Consensus 25 ~~l~~~l~~~g~~r~liVtd~~~~--~~~~~v~~~L~~~~~~~-f-~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 100 (358)
T 3jzd_A 25 SQVAAEVERLGAKRALVLCTPNQQ--AEAERIADLLGPLSAGV-Y-AGAVMHVPIESARDATARAREAGADCAVAVGGGS 100 (358)
T ss_dssp GGHHHHHHHTTCSCEEEECCGGGH--HHHHHHHHHHGGGEEEE-E-CCCCTTCBHHHHHHHHHHHHHHTCSEEEEEESHH
T ss_pred HHHHHHHHHhCCCeEEEEeCCcHH--HHHHHHHHHhccCCEEE-e-cCCcCCCCHHHHHHHHHHhhccCCCEEEEeCCcH
Confidence 346778888999999999866543 34678888888765432 2 223333455677778888888899998877543
Q ss_pred -CcHHHHH
Q 003958 232 -NRGPVVF 238 (784)
Q Consensus 232 -~~~~~~~ 238 (784)
-++..++
T Consensus 101 viD~aK~i 108 (358)
T 3jzd_A 101 TTGLGKAI 108 (358)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 3444444
No 299
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=41.50 E-value=54 Score=31.59 Aligned_cols=77 Identities=5% Similarity=-0.045 Sum_probs=52.1
Q ss_pred CcEEEEEEEc--CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHH-H
Q 003958 164 WREVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFH-V 240 (784)
Q Consensus 164 w~~v~ii~~d--~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~-~ 240 (784)
-+.|+++..+ +.|.....+.+++.+++.|..+.....- .+.......++.+...+.+.||+... ....++ .
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~~dgiIi~~~---~~~~~~~~ 81 (277)
T 3e61_A 8 SKLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNSD---NDIKKAQGYLATFVSHNCTGMISTAF---NENIIENT 81 (277)
T ss_dssp --CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEECT---TCHHHHHHHHHHHHHTTCSEEEECGG---GHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC---CCHHHHHHHHHHHHhCCCCEEEEecC---ChHHHHHH
Confidence 3568888864 5567778899999999999887653221 24445567778888889999999762 234566 6
Q ss_pred HHHcCC
Q 003958 241 AQYLGM 246 (784)
Q Consensus 241 a~~~g~ 246 (784)
+.+.|.
T Consensus 82 l~~~~i 87 (277)
T 3e61_A 82 LTDHHI 87 (277)
T ss_dssp HHHC-C
T ss_pred HHcCCC
Confidence 776654
No 300
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=41.01 E-value=1.1e+02 Score=30.11 Aligned_cols=126 Identities=10% Similarity=0.048 Sum_probs=65.1
Q ss_pred HHHHHHHhcCceEEEccCchhhHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcE
Q 003958 87 AEALHLMEGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWRE 166 (784)
Q Consensus 87 ~~~~~li~~~v~aiiGp~~s~~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~ 166 (784)
+.+..|.++++.+|+-+.++.++..+..+-+..++|+|... . .++...++..+-++
T Consensus 77 ~~~~~L~~~g~d~IVIACNTas~~~l~~lr~~~~iPVigii--e----------------------pa~~~A~~~~~~~r 132 (290)
T 2vvt_A 77 EMADFLLKKRIKMLVIACNTATAVALEEIKAALPIPVVGVI--L----------------------PGARAAVKVTKNNK 132 (290)
T ss_dssp HHHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEESS--H----------------------HHHHHHHHHCSSSE
T ss_pred HHHHHHHHCCCCEEEEeCcchhHHHHHHHHHhCCCCEEccc--H----------------------HHHHHHHHhcCCCE
Confidence 34444555699999875555554556667777899999731 0 01111122345567
Q ss_pred EEEEEEcCCCcchhHHHHHHHHhcc--CcEEEEeeccCC-------C-CC----hhHHHHHHHHhhcCCceEEEEeccC-
Q 003958 167 VIAIYVDDDHGRNGIAALGDTLAAK--RCRISFKAPLSV-------E-AT----EDEITDLLVKVALTESRIIVVHTHY- 231 (784)
Q Consensus 167 v~ii~~d~~~g~~~~~~l~~~l~~~--gi~v~~~~~~~~-------~-~~----~~d~~~~l~~l~~~~~~vIvl~~~~- 231 (784)
|+|+......-. ..+++.+++. +..|.... .+. . .+ ...+...++.+++.++|+||+.|..
T Consensus 133 IgVLaT~~T~~s---~~y~~~l~~~~~~~~v~~~~-~~~lv~~ve~g~~~~~~~~~~l~~~l~~l~~~g~D~IVLGCTh~ 208 (290)
T 2vvt_A 133 IGVIGTLGTIKS---ASYEIAIKSKAPAIEVTSLA-CPKFVPIVESNQYRSSVAKKIVAETLQALQLKGLDTLILGCTHY 208 (290)
T ss_dssp EEEEECHHHHHT---THHHHHHHTTCTTSEEEEEE-CTTHHHHHHTTCTTSHHHHHHHHHHHGGGTTSCCSEEEECSTTG
T ss_pred EEEEeCcHhhhh---HHHHHHHHHhCCCCEEEecc-CHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhCCCCEEEECCcCH
Confidence 777775432111 1234444443 44443211 110 0 01 1234555666666789999997654
Q ss_pred CcHHHHHHH
Q 003958 232 NRGPVVFHV 240 (784)
Q Consensus 232 ~~~~~~~~~ 240 (784)
..+...+++
T Consensus 209 p~l~~~i~~ 217 (290)
T 2vvt_A 209 PLLRPVIQN 217 (290)
T ss_dssp GGGHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 301
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=40.99 E-value=50 Score=29.27 Aligned_cols=63 Identities=13% Similarity=0.103 Sum_probs=44.6
Q ss_pred cEEEEEEEcCCC--c---chhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEecc
Q 003958 165 REVIAIYVDDDH--G---RNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH 230 (784)
Q Consensus 165 ~~v~ii~~d~~~--g---~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~ 230 (784)
.+++||...|+- | ......+.+.+++.|.++.....++ .+ ..+...+++..+.++|+||..+.
T Consensus 8 ~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~--Dd-~~i~~al~~a~~~~~DlVittGG 75 (164)
T 3pzy_A 8 RSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVA--DG-SPVGEALRKAIDDDVDVILTSGG 75 (164)
T ss_dssp CEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEEC--SS-HHHHHHHHHHHHTTCSEEEEESC
T ss_pred CEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeC--CH-HHHHHHHHHHHhCCCCEEEECCC
Confidence 478888765431 2 3446778888999999988776676 35 67778887766567999998743
No 302
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=40.82 E-value=77 Score=31.25 Aligned_cols=39 Identities=18% Similarity=0.142 Sum_probs=26.1
Q ss_pred HHHHHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEee
Q 003958 498 DVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGD 545 (784)
Q Consensus 498 dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~ 545 (784)
.+++.+-+..|+++++. . +.-..+...|.+|++|+....
T Consensus 24 ~i~~~~Le~~G~~Ve~~--~-------~~~~~~~~Al~~G~iD~~~~~ 62 (298)
T 2rin_A 24 ATATTILEALGYETDVK--V-------LSVPVTYTSLKNKDIDVFLGN 62 (298)
T ss_dssp HHHHHHHHHHTCEEEEE--C-------CCHHHHHHHHHHTSCCEEEEE
T ss_pred HHHHHHHHHcCCceEEE--E-------CCcHHHHHHHHcCCcEEEhhh
Confidence 34445555679885543 2 334567889999999998754
No 303
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=40.04 E-value=2.7e+02 Score=27.07 Aligned_cols=68 Identities=12% Similarity=0.093 Sum_probs=44.8
Q ss_pred eeeHHHHHHHHHHC-CCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeEEeecCccccceeccccccccEEEEEe
Q 003958 494 GFCIDVFTAAINLL-PYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIITNRTKMADFTQPYIESGLVVVAP 572 (784)
Q Consensus 494 G~~~dl~~~l~~~l-~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~ 572 (784)
.+...++..+.+.. +.+ +++.. +....++..|.+|++|+++...... ...+ -..++....++++++
T Consensus 103 ~~l~~~l~~f~~~~P~v~--l~l~~-------~~~~~~~~~l~~g~~Dlai~~~~~~---~~~l-~~~~L~~~~~~~v~~ 169 (313)
T 2h98_A 103 GLLPEIIYLFRQQNPEIH--IELIE-------CGTKDQINALKQGKIDLGFGRLKIT---DPAI-RRIMLHKEQLKLAIH 169 (313)
T ss_dssp TTHHHHHHHHHHHCTTSE--EEEEE-------CCHHHHHHHHHHTSCSEEEESSCCC---CTTE-EEEEEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHCCCeE--EEEEe-------CChHHHHHHHHcCCCCEEEEeCCCC---CCCe-eEEEeeeCcEEEEEc
Confidence 45667888888776 444 55543 3567889999999999998643221 1222 235677777887776
Q ss_pred cc
Q 003958 573 VR 574 (784)
Q Consensus 573 ~~ 574 (784)
..
T Consensus 170 ~~ 171 (313)
T 2h98_A 170 KH 171 (313)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 304
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=39.59 E-value=1.7e+02 Score=28.27 Aligned_cols=60 Identities=8% Similarity=0.001 Sum_probs=35.7
Q ss_pred CCCCEEEEEEecCC------CCHHHHHHHHH----HHHhcCceEEEccCchhhHHHHHHhhhcCCccEEec
Q 003958 66 LGGTKLKLQMQDCN------HSGFLALAEAL----HLMEGQTVAIIGPQDAVTSHVVSHVANELQVPLLSF 126 (784)
Q Consensus 66 l~g~~l~~~~~D~~------~~~~~a~~~~~----~li~~~v~aiiGp~~s~~~~~va~~~~~~~ip~Is~ 126 (784)
||+.++.+. .|+. .+.+...+.+. .|.+.++.+|+-+.++.++.++..+-+..++|+|..
T Consensus 47 lP~e~~iy~-~D~a~~PYG~ks~e~i~~~~~~~~~~L~~~g~d~IVIACNTa~~~al~~lr~~~~iPvigi 116 (274)
T 3uhf_A 47 RLFDEIIYY-GDTARVPYGVKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYGV 116 (274)
T ss_dssp TCCSEEEEE-ECTTTCCCTTSCHHHHHHHHHHHHHHHTTSCCSEEEECCHHHHHHSHHHHHHHCSSCEECS
T ss_pred CCCCCEEEE-ecCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHhcCCCEEcC
Confidence 466666544 3532 24444443333 344459999887555555445566777789999963
No 305
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=39.19 E-value=76 Score=31.98 Aligned_cols=70 Identities=3% Similarity=-0.106 Sum_probs=43.7
Q ss_pred HHHcCCcEEEEEEEc--CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEecc
Q 003958 159 VDHYGWREVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH 230 (784)
Q Consensus 159 l~~~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~ 230 (784)
|+.-.-+.|+++..+ +.|.....+.+++.+++.|..+..... . ..+.......++.+...+.|.||+...
T Consensus 56 l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~-~~~~~~~~~~l~~l~~~~vdGiIi~~~ 127 (349)
T 1jye_A 56 LAGKQSLLIGVATSSLALHAPSQIVAAILSRADQLGASVVVSMV-E-RSGVEACKTAVHNLLAQRVSGLIINYP 127 (349)
T ss_dssp ------CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-C-SSSHHHHHHHHHHHHTTTCSCEEEESC
T ss_pred hhcCCCCEEEEEeCCCCcccHHHHHHHHHHHHHHcCCEEEEEeC-C-CCcHHHHHHHHHHHHHCCCCEEEEecC
Confidence 333345678998865 456667788889999999988765321 1 112233456677777788998888643
No 306
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=39.00 E-value=58 Score=31.67 Aligned_cols=80 Identities=6% Similarity=-0.119 Sum_probs=51.4
Q ss_pred CCcEEEEEEEc--CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHH---HHHHhhcCCceEEEEeccCCcHHHH
Q 003958 163 GWREVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITD---LLVKVALTESRIIVVHTHYNRGPVV 237 (784)
Q Consensus 163 ~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~---~l~~l~~~~~~vIvl~~~~~~~~~~ 237 (784)
.-+.|+++..+ +.|.....+.+++.+++.|..+..... . .+...... .++.+...+.+.||+...... ...
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~ 82 (290)
T 2rgy_A 7 QLGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATG-C--GESTPREQALEAVRFLIGRDCDGVVVISHDLH-DED 82 (290)
T ss_dssp -CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEECC-C--SSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC-HHH
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeC-C--CchhhhhhHHHHHHHHHhcCccEEEEecCCCC-HHH
Confidence 34578888754 456677788899999999988764321 1 12223344 677777788999988754433 345
Q ss_pred HHHHHHcCC
Q 003958 238 FHVAQYLGM 246 (784)
Q Consensus 238 ~~~a~~~g~ 246 (784)
++.+.+.|.
T Consensus 83 ~~~l~~~~i 91 (290)
T 2rgy_A 83 LDELHRMHP 91 (290)
T ss_dssp HHHHHHHCS
T ss_pred HHHHhhcCC
Confidence 666666553
No 307
>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}
Probab=38.92 E-value=38 Score=32.12 Aligned_cols=58 Identities=16% Similarity=0.208 Sum_probs=33.1
Q ss_pred HHHHhcCceEEEccCchhhHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHHcCCcEEEE
Q 003958 90 LHLMEGQTVAIIGPQDAVTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIA 169 (784)
Q Consensus 90 ~~li~~~v~aiiGp~~s~~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~~~w~~v~i 169 (784)
..|.+.++.+|+-+.++... .+..+-+..++|+|.. .++.++-+...+-++|++
T Consensus 70 ~~L~~~g~~~iviaCNTa~~-~~~~l~~~~~iPvi~i-------------------------~~~~~~~a~~~~~~rVgv 123 (231)
T 3ojc_A 70 ISLKHAGAEVIVVCTNTMHK-VADDIEAACGLPLLHI-------------------------ADATAVQIKQQGIDKIGL 123 (231)
T ss_dssp HHHHHHTCCEEEECSSGGGG-GHHHHHHHHCSCBCCH-------------------------HHHHHHHHHHTTCCEEEE
T ss_pred HHHHhcCCCEEEEeCCchHH-HHHHHHHhCCCCEecc-------------------------HHHHHHHHHHcCCCEEEE
Confidence 34444588888765554332 2244455567887753 233333333456678888
Q ss_pred EEEc
Q 003958 170 IYVD 173 (784)
Q Consensus 170 i~~d 173 (784)
+...
T Consensus 124 LaT~ 127 (231)
T 3ojc_A 124 LGTR 127 (231)
T ss_dssp ESCH
T ss_pred EcCH
Confidence 8754
No 308
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=38.65 E-value=44 Score=32.27 Aligned_cols=71 Identities=14% Similarity=0.039 Sum_probs=46.6
Q ss_pred eeHHHHHHHHHHC-CCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeEEeecCcc-ccceeccccccccEEEEEe
Q 003958 495 FCIDVFTAAINLL-PYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIITNRT-KMADFTQPYIESGLVVVAP 572 (784)
Q Consensus 495 ~~~dl~~~l~~~l-~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~~~t~~r~-~~~~fs~p~~~~~~~~~~~ 572 (784)
+..+++..+.++. +.+ +++.. +....++..|.+|++|+++.......++. ..+. ..|+....+.++++
T Consensus 41 ~l~~~l~~f~~~~P~i~--v~i~~-------~~~~~~~~~l~~g~~Di~i~~~~~~~~~~~~~~~-~~~l~~~~~~~v~~ 110 (290)
T 1twy_A 41 IMDVLAEKYNQQHPETY--VAVQG-------VGSTAGISLLKKGVADIAMTSRYLTESEAQNTLH-TFTLAFDGLAIVVN 110 (290)
T ss_dssp HHHHHHHHHHHHCTTCE--EEEEE-------SCHHHHHHHHHTTSCSEEEESSCCCTTTCCTTCE-EEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHhhCCCce--EEEEe-------cCcHHHHHHHhcCCCcEEEecCCCchhhhhcCce-EEEEEeeeEEEEEC
Confidence 4456778888777 666 44433 45778899999999999986433222110 2232 35778888888887
Q ss_pred ccC
Q 003958 573 VRK 575 (784)
Q Consensus 573 ~~~ 575 (784)
+..
T Consensus 111 ~~~ 113 (290)
T 1twy_A 111 QAN 113 (290)
T ss_dssp TTC
T ss_pred CCC
Confidence 654
No 309
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=38.65 E-value=61 Score=31.65 Aligned_cols=80 Identities=10% Similarity=-0.010 Sum_probs=51.7
Q ss_pred cEEEEEEE--cCCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCC-cHHHHHHHH
Q 003958 165 REVIAIYV--DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYN-RGPVVFHVA 241 (784)
Q Consensus 165 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~-~~~~~~~~a 241 (784)
.+|+++.. ++.|.....+.+++.+++.|+.+.... +...+.......++.+...+.+.||+..... .....++++
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~ 82 (303)
T 3d02_A 5 KTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQVG--PSSTDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFKKA 82 (303)
T ss_dssp EEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEEC--CSSSCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHHHH
T ss_pred eEEEEEeccCCChHHHHHHHHHHHHHHHcCCEEEEEC--CCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHH
Confidence 46788774 345677778889999999998775321 1112344455667777778899988875432 234556777
Q ss_pred HHcCC
Q 003958 242 QYLGM 246 (784)
Q Consensus 242 ~~~g~ 246 (784)
.+.|.
T Consensus 83 ~~~~i 87 (303)
T 3d02_A 83 RDAGI 87 (303)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 66553
No 310
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=38.44 E-value=99 Score=25.24 Aligned_cols=57 Identities=16% Similarity=0.085 Sum_probs=37.5
Q ss_pred hHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEecc--CCcHHHHHHHHHHcC
Q 003958 180 GIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH--YNRGPVVFHVAQYLG 245 (784)
Q Consensus 180 ~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~--~~~~~~~~~~a~~~g 245 (784)
..+.++..+++.|..+... . + ....+..+++..+++|++... ..+...++++.++..
T Consensus 18 ~~~~l~~~L~~~g~~v~~~---~---~---~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~ 76 (132)
T 3lte_A 18 MAAAIERVLKRDHWQVEIA---H---N---GFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNK 76 (132)
T ss_dssp HHHHHHHHHHHTTCEEEEE---S---S---HHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHCCcEEEEe---C---C---HHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcC
Confidence 4667777777778765432 1 2 234555666678999998744 345678888887754
No 311
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=38.43 E-value=70 Score=30.63 Aligned_cols=78 Identities=6% Similarity=0.037 Sum_probs=51.2
Q ss_pred cEEEEEEEc--CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHHH
Q 003958 165 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQ 242 (784)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a~ 242 (784)
+.|+++..+ +.|.....+.+++.+++.|..+..... . .+.......++.+...+.+.||+...... ...++.+.
T Consensus 4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~~~l~ 79 (275)
T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGYS-D--YSIEQEEKLLSTFLESRPAGVVLFGSEHS-QRTHQLLE 79 (275)
T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEECCEEC-T--TCHHHHHHHHHHHHTSCCCCEEEESSCCC-HHHHHHHH
T ss_pred eEEEEEeCCCccccHHHHHHHHHHHHHHCCCEEEEEcC-C--CCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHHHH
Confidence 468888854 456667788899999999987654321 1 23444556777777788998888754332 34566666
Q ss_pred HcCC
Q 003958 243 YLGM 246 (784)
Q Consensus 243 ~~g~ 246 (784)
+.+.
T Consensus 80 ~~~i 83 (275)
T 3d8u_A 80 ASNT 83 (275)
T ss_dssp HHTC
T ss_pred hCCC
Confidence 6553
No 312
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=38.41 E-value=35 Score=36.09 Aligned_cols=83 Identities=10% Similarity=0.046 Sum_probs=55.3
Q ss_pred HHHHHHHHcCCcEEEEEEEcCCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEecc--C
Q 003958 154 AIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH--Y 231 (784)
Q Consensus 154 ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~--~ 231 (784)
.+.++++.++.+++.||++..... ...+.+.+.+++.|+.+.+ ..+......+++....+.+++ +.|+||-.+. .
T Consensus 81 ~l~~~l~~~g~~rvlIVtd~~~~~-~~~~~v~~~L~~~gi~~~~-~~~~ge~~~~~v~~~~~~~~~-~~D~IIAvGGGSv 157 (450)
T 1ta9_A 81 RSYMYVKKWATKSAVVLADQNVWN-ICANKIVDSLSQNGMTVTK-LVFGGEASLVELDKLRKQCPD-DTQVIIGVGGGKT 157 (450)
T ss_dssp GHHHHHTTTCSSEEEEEEEHHHHH-HTHHHHHHHHHHTTCEEEE-EEECSCCCHHHHHHHHTTSCT-TCCEEEEEESHHH
T ss_pred HHHHHHHhcCCCEEEEEECccHHH-HHHHHHHHHHHHCCCeEEE-EeeCCCCCHHHHHHHHHHHhh-CCCEEEEeCCcHH
Confidence 456677778866999998655433 4678888889888987743 234333345567777777777 8999987644 3
Q ss_pred CcHHHHHH
Q 003958 232 NRGPVVFH 239 (784)
Q Consensus 232 ~~~~~~~~ 239 (784)
-++..++.
T Consensus 158 iD~AK~iA 165 (450)
T 1ta9_A 158 MDSAKYIA 165 (450)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44555544
No 313
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=38.34 E-value=49 Score=33.46 Aligned_cols=79 Identities=9% Similarity=-0.025 Sum_probs=50.7
Q ss_pred CcEEEEEEEc--CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHH
Q 003958 164 WREVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVA 241 (784)
Q Consensus 164 w~~v~ii~~d--~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a 241 (784)
-+.|+++..+ +.|.....+.+++.+++.|..+..... . .+.......++.+...+.|.||+...... ...++.+
T Consensus 66 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~l 141 (348)
T 3bil_A 66 SNTIGVIVPSLINHYFAAMVTEIQSTASKAGLATIITNS-N--EDATTMSGSLEFLTSHGVDGIICVPNEEC-ANQLEDL 141 (348)
T ss_dssp --CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEEEEEC-T--TCHHHHHHHHHHHHHTTCSCEEECCCGGG-HHHHHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeC-C--CCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHHH
Confidence 3568888854 556677788899999999987765321 1 23344456777777788998888754332 3456666
Q ss_pred HHcCC
Q 003958 242 QYLGM 246 (784)
Q Consensus 242 ~~~g~ 246 (784)
.+.|.
T Consensus 142 ~~~~i 146 (348)
T 3bil_A 142 QKQGM 146 (348)
T ss_dssp HHC-C
T ss_pred HhCCC
Confidence 66553
No 314
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=37.98 E-value=83 Score=31.30 Aligned_cols=78 Identities=10% Similarity=-0.040 Sum_probs=52.0
Q ss_pred CcEEEEEEE--cCCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHH
Q 003958 164 WREVIAIYV--DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVA 241 (784)
Q Consensus 164 w~~v~ii~~--d~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a 241 (784)
-+.|+++.. ++.|.....+.+++.+++.|..+..... . .+.......++.+...+.+.||+....... ..++.+
T Consensus 60 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~~l 135 (332)
T 2hsg_A 60 TTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNS-D--QNQDKELHLLNNMLGKQVDGIIFMSGNVTE-EHVEEL 135 (332)
T ss_dssp CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEEEC-C--SHHHHHHHHHHHTSCCSSCCEEECCSSCCH-HHHHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeC-C--CChHHHHHHHHHHHhCCCcEEEEecCCCCH-HHHHHH
Confidence 467999885 3667778889999999999988765321 1 223334566777777889988887543332 455566
Q ss_pred HHcC
Q 003958 242 QYLG 245 (784)
Q Consensus 242 ~~~g 245 (784)
.+.+
T Consensus 136 ~~~~ 139 (332)
T 2hsg_A 136 KKSP 139 (332)
T ss_dssp TTSS
T ss_pred HhCC
Confidence 5544
No 315
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=37.93 E-value=1.2e+02 Score=28.92 Aligned_cols=93 Identities=6% Similarity=0.023 Sum_probs=66.7
Q ss_pred HHHHHHHHHcCCcEEEEEEEc------------CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcC
Q 003958 153 AAIAEIVDHYGWREVIAIYVD------------DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALT 220 (784)
Q Consensus 153 ~ai~~~l~~~~w~~v~ii~~d------------~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~ 220 (784)
...++.++..|.+.|=+...+ ........+.+++.+++.|+.+........ ....++...+...+.-
T Consensus 25 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~-~~~~~~~~~i~~A~~l 103 (262)
T 3p6l_A 25 TEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVGTGVYVA-EKSSDWEKMFKFAKAM 103 (262)
T ss_dssp HHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEEEEEECC-SSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccCC-ccHHHHHHHHHHHHHc
Confidence 456777888898888876422 122344578999999999998876554432 3456678888888888
Q ss_pred CceEEEEeccCCcHHHHHHHHHHcCC
Q 003958 221 ESRIIVVHTHYNRGPVVFHVAQYLGM 246 (784)
Q Consensus 221 ~~~vIvl~~~~~~~~~~~~~a~~~g~ 246 (784)
+++.|++....+....+...|++.|+
T Consensus 104 Ga~~v~~~~~~~~~~~l~~~a~~~gv 129 (262)
T 3p6l_A 104 DLEFITCEPALSDWDLVEKLSKQYNI 129 (262)
T ss_dssp TCSEEEECCCGGGHHHHHHHHHHHTC
T ss_pred CCCEEEecCCHHHHHHHHHHHHHhCC
Confidence 99998887666667777777777764
No 316
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=37.93 E-value=55 Score=31.60 Aligned_cols=69 Identities=6% Similarity=0.035 Sum_probs=47.8
Q ss_pred HHHHcCCcEEEEEEEc--CCCcchhHHHHHHHHhccCcE-EEEeeccCCCCChhHHHHHHHHhhcCCceEEEEec
Q 003958 158 IVDHYGWREVIAIYVD--DDHGRNGIAALGDTLAAKRCR-ISFKAPLSVEATEDEITDLLVKVALTESRIIVVHT 229 (784)
Q Consensus 158 ~l~~~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~gi~-v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~ 229 (784)
-|+.-.-+.|+++..+ +.|.....+.+++.+++.|.. +..... ..+...-...++.+...+.|.||+..
T Consensus 4 ~L~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 4 TLYQKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFST---NSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp ----CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECS---SCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred hhhcCCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEeC---CCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 3445556789999865 556777889999999999988 654321 12444556677888888999999876
No 317
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=37.72 E-value=70 Score=31.40 Aligned_cols=79 Identities=6% Similarity=-0.045 Sum_probs=51.9
Q ss_pred cEEEEEEEc--CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCC-cHHHHHHHH
Q 003958 165 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYN-RGPVVFHVA 241 (784)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~-~~~~~~~~a 241 (784)
.+|+++..+ +.|.....+.+++.+++.|..+..... . .+.......++.+...+.+.||+..... .....++.+
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~-~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (306)
T 2vk2_A 3 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG-Q--QKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEA 79 (306)
T ss_dssp CEEEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEEC-T--TCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeCC-C--CCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHH
Confidence 468888754 446666778888889999988765321 1 2334445667777777899988875443 234567777
Q ss_pred HHcCC
Q 003958 242 QYLGM 246 (784)
Q Consensus 242 ~~~g~ 246 (784)
.+.|.
T Consensus 80 ~~~~i 84 (306)
T 2vk2_A 80 KDAEI 84 (306)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 76553
No 318
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=37.50 E-value=69 Score=28.41 Aligned_cols=63 Identities=13% Similarity=0.149 Sum_probs=41.1
Q ss_pred EEEEEEEcCCC-----cchhHHHHHHH----HhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEecc
Q 003958 166 EVIAIYVDDDH-----GRNGIAALGDT----LAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH 230 (784)
Q Consensus 166 ~v~ii~~d~~~-----g~~~~~~l~~~----l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~ 230 (784)
+++||...|+- -......+.+. +++.|+.+.....++ .+...+...+++..+.++|+||..+.
T Consensus 7 ~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~--Dd~~~I~~~l~~a~~~~~DlVittGG 78 (167)
T 2g2c_A 7 KSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVP--EGYDTVVEAIATALKQGARFIITAGG 78 (167)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEEC--SSHHHHHHHHHHHHHTTCSEEEEESC
T ss_pred EEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeC--CCHHHHHHHHHHHHhCCCCEEEECCC
Confidence 67777754431 12345667778 888999888777777 45667788888776556899998743
No 319
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=36.98 E-value=1.2e+02 Score=29.26 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=26.1
Q ss_pred HHHHHHhcCceEEEccCchhhHHHHHHhhhcC-CccEEe
Q 003958 88 EALHLMEGQTVAIIGPQDAVTSHVVSHVANEL-QVPLLS 125 (784)
Q Consensus 88 ~~~~li~~~v~aiiGp~~s~~~~~va~~~~~~-~ip~Is 125 (784)
.+..|.+.++.+|+-+.++.++.++..+-+.. ++|+|.
T Consensus 61 ~~~~L~~~g~~~iVIACNTa~~~al~~lr~~~~~iPvig 99 (268)
T 3out_A 61 TAKFLIDQEVKAIIIACNTISAIAKDIVQEIAKAIPVID 99 (268)
T ss_dssp HHHHHHHTTCSEEEECCHHHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHCCCCEEEEeCCChHHHHHHHHHHhcCCCCEEe
Confidence 33445556999998765555554556666777 899997
No 320
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=36.90 E-value=36 Score=35.57 Aligned_cols=83 Identities=10% Similarity=0.077 Sum_probs=53.8
Q ss_pred HHHHHHHcCCcEEEEEEEcCCCcc-hhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEecc--C
Q 003958 155 IAEIVDHYGWREVIAIYVDDDHGR-NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH--Y 231 (784)
Q Consensus 155 i~~~l~~~~w~~v~ii~~d~~~g~-~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~--~ 231 (784)
+.++++ ++ +++.||+++..... ...+.+.+.++ |+++.......++++.+.....++.+++.++|+||-.+. .
T Consensus 43 l~~~l~-~g-~r~liVtd~~~~~~~g~~~~v~~~L~--g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 118 (408)
T 1oj7_A 43 LREQIP-HD-ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSV 118 (408)
T ss_dssp HHHHSC-TT-CEEEEEECSSHHHHHSHHHHHHHHTT--TSEEEEECCCCSSCBHHHHHHHHHHHHHHTCCEEEEEESHHH
T ss_pred HHHHHh-cC-CEEEEEECCchhhhccHHHHHHHHhC--CCEEEEeCCcCCCcCHHHHHHHHHHHHHcCCCEEEEeCCchH
Confidence 455666 67 89999985543332 25677888776 776543333433456677788888888889999997644 3
Q ss_pred CcHHHHHHHH
Q 003958 232 NRGPVVFHVA 241 (784)
Q Consensus 232 ~~~~~~~~~a 241 (784)
-++..++...
T Consensus 119 iD~AK~iA~~ 128 (408)
T 1oj7_A 119 LDGTKFIAAA 128 (408)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555555443
No 321
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=36.85 E-value=2.9e+02 Score=26.50 Aligned_cols=116 Identities=14% Similarity=0.113 Sum_probs=67.9
Q ss_pred EEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc-----CceEEEccCch
Q 003958 33 NIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG-----QTVAIIGPQDA 106 (784)
Q Consensus 33 ~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~-----~v~aiiGp~~s 106 (784)
+||.+.... ......-..|+.-|+++. |.++. +.....+...+.+.+.+++.. .+.+|+. .+.
T Consensus 133 ~I~~i~~~~~~~~~~~R~~Gf~~al~~~--------g~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~-~~d 201 (295)
T 3hcw_A 133 ELIFITEKGNFEVSKDRIQGFETVASQF--------NLDYQ--IIETSNEREVILNYMQNLHTRLKDPNIKQAIIS-LDA 201 (295)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHHHHT--------TCEEE--EEEECSCHHHHHHHHHHHHHHHTCTTSCEEEEE-SSH
T ss_pred cEEEEcCCccchhHHHHHHHHHHHHHHc--------CCCee--EEeccCCHHHHHHHHHHHHhhcccCCCCcEEEE-CCh
Confidence 577776543 222344567888888763 33444 233345677777777777754 6889986 344
Q ss_pred hhHHHHHHhhhcCC--cc----EEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHH
Q 003958 107 VTSHVVSHVANELQ--VP----LLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDH 161 (784)
Q Consensus 107 ~~~~~va~~~~~~~--ip----~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~ 161 (784)
..+..+...+...+ || ++++... .+.....|.+..+..+...+++..+++|..
T Consensus 202 ~~A~g~~~al~~~g~~vP~di~vig~D~~--~~~~~~~p~lttv~~~~~~~g~~a~~~l~~ 260 (295)
T 3hcw_A 202 MLHLAILSVLYELNIEIPKDVMTATFNDS--YLTEIASPPQTCIDIKPRMLGQQAGSAILN 260 (295)
T ss_dssp HHHHHHHHHHHHTTCCTTTTEEEEEECCS--HHHHTSSSCCEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEEeCCh--hHHhhCCCCeeEEEECHHHHHHHHHHHHHH
Confidence 44555555565554 33 5554332 122223355666667777888888877643
No 322
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=36.47 E-value=4.1e+02 Score=28.10 Aligned_cols=142 Identities=11% Similarity=0.006 Sum_probs=84.4
Q ss_pred CHHHHHHHHHHHHhcCceEEE-ccCch-hhHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHH
Q 003958 81 SGFLALAEALHLMEGQTVAII-GPQDA-VTSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEI 158 (784)
Q Consensus 81 ~~~~a~~~~~~li~~~v~aii-Gp~~s-~~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~ 158 (784)
.+..+...+.+..+.++.+|| ....+ ..-..+..+++.+++.+|.|.+ ....-.. +......
T Consensus 45 Pa~~v~~~v~e~~~~Gv~~viis~Gf~~~~~~~l~~~A~~~g~rliGPNc--G~~~~~~----~~~~f~~---------- 108 (480)
T 3dmy_A 45 AGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLLVMGPDC--GTSMIAG----TPLAFAN---------- 108 (480)
T ss_dssp CHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHHTTCCEECSSC--CEEEETT----EEEESCC----------
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEecCc--cccccCC----ccccccC----------
Confidence 555666667777777665444 22222 2234566778888898888766 2111111 1111110
Q ss_pred HHHcCCcEEEEEEEcCCCcchhHHHHHHHHhccCcEEEEeeccCCCC-----ChhHHHHHHHHhhc-CCceEEEEeccCC
Q 003958 159 VDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEA-----TEDEITDLLVKVAL-TESRIIVVHTHYN 232 (784)
Q Consensus 159 l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~-----~~~d~~~~l~~l~~-~~~~vIvl~~~~~ 232 (784)
.+.--+|++|..... ....+...+.+.|+-+.....+-... ...++.+.++.+.+ .++++|+++....
T Consensus 109 --~~~~G~vaivSqSGa----l~~~i~~~~~~~g~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~Dp~T~~I~ly~E~~ 182 (480)
T 3dmy_A 109 --VMPEGNIGVIGASGT----GIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPP 182 (480)
T ss_dssp --CCCEEEEEEEESCSH----HHHHHHHHHHHTTCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHTCTTCCEEEEEESCC
T ss_pred --CCCCCCEEEEeccHH----HHHHHHHHHHHcCCCceEEEEcCCCccccccCCCCHHHHHHHHhcCCCCCEEEEEEecC
Confidence 022458999986654 34556666777777666655554321 44568888888765 5789999987542
Q ss_pred -c--HHHHHHHHHHc
Q 003958 233 -R--GPVVFHVAQYL 244 (784)
Q Consensus 233 -~--~~~~~~~a~~~ 244 (784)
+ ++.|++++++.
T Consensus 183 ~e~~~~~f~~~ar~~ 197 (480)
T 3dmy_A 183 AEAVRLKIVNAMKAT 197 (480)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhC
Confidence 2 37888888764
No 323
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=36.05 E-value=1.7e+02 Score=24.74 Aligned_cols=58 Identities=10% Similarity=0.047 Sum_probs=40.3
Q ss_pred hhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEecc--CCcHHHHHHHHHHcC
Q 003958 179 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH--YNRGPVVFHVAQYLG 245 (784)
Q Consensus 179 ~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~--~~~~~~~~~~a~~~g 245 (784)
...+.+++.+++.|..+.. .. +....+..+++..+++|++... ..+...+++..++..
T Consensus 18 ~~~~~l~~~L~~~g~~v~~---~~------~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~ 77 (154)
T 3gt7_A 18 TQAEHLKHILEETGYQTEH---VR------NGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQP 77 (154)
T ss_dssp HHHHHHHHHHHTTTCEEEE---ES------SHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHCCCEEEE---eC------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCC
Confidence 3567788888888876542 21 2345667777788999999854 456778888888754
No 324
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=36.05 E-value=3.4e+02 Score=27.11 Aligned_cols=132 Identities=14% Similarity=0.252 Sum_probs=71.6
Q ss_pred EEEEEeecCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEc-cCchhhHHH
Q 003958 33 NIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIG-PQDAVTSHV 111 (784)
Q Consensus 33 ~IG~i~~~~~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiG-p~~s~~~~~ 111 (784)
.|+.+|...+ -..+..++.|..++ +|..+.+...++.-.-.+.+.-..+.++.-+++|+- ..... .
T Consensus 65 ~la~lF~e~S---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ssl~kgEsl~DTarvLs~~~D~IviR~~~~~---~ 131 (339)
T 4a8t_A 65 SLGMIFQQSS---TRTRVSFETAMEQL-------GGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVERHH---S 131 (339)
T ss_dssp EEEEEESSCC---SHHHHHHHHHHHHT-------TCEEEEECCC-CCSSSSSCHHHHHHHHHHHCSEEEEECSSHH---H
T ss_pred eEEEEecCCC---chHHHHHHHHHHHc-------CCeEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEecCcHH---H
Confidence 5788887654 25678899999884 455554433333322122222333333333444432 22223 3
Q ss_pred HHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHH---HHHc--C--C--cEEEEEEEcCCCcchhHH
Q 003958 112 VSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEI---VDHY--G--W--REVIAIYVDDDHGRNGIA 182 (784)
Q Consensus 112 va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~---l~~~--~--w--~~v~ii~~d~~~g~~~~~ 182 (784)
+..+++..++|+|.-+ + +...| .++++++ .+++ | . .+|+++. |. ...+.
T Consensus 132 ~~~lA~~~~vPVINag--~----~~~HP------------tQaLaDl~Ti~e~~~~G~~l~glkva~vG--D~--~rva~ 189 (339)
T 4a8t_A 132 IVDLANCATIPVINGM--S----DYNHP------------TQELGDLCTMVEHLPEGKKLEDCKVVFVG--DA--TQVCF 189 (339)
T ss_dssp HHHHHHHCSSCEEECC--C----SSCCH------------HHHHHHHHHHHHTCCTTCCGGGCEEEEES--SC--CHHHH
T ss_pred HHHHHHhCCCCEEECC--C----CCcCc------------HHHHHHHHHHHHHhhcCCCCCCCEEEEEC--CC--chhHH
Confidence 3455677789999732 2 11112 3566665 3566 5 2 5666654 32 45667
Q ss_pred HHHHHHhccCcEEEEee
Q 003958 183 ALGDTLAAKRCRISFKA 199 (784)
Q Consensus 183 ~l~~~l~~~gi~v~~~~ 199 (784)
.+-..+...|.++....
T Consensus 190 Sl~~~~~~~G~~v~~~~ 206 (339)
T 4a8t_A 190 SLGLITTKMGMNFVHFG 206 (339)
T ss_dssp HHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHcCCEEEEEC
Confidence 77777888888776543
No 325
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=36.05 E-value=1.8e+02 Score=26.66 Aligned_cols=86 Identities=9% Similarity=-0.005 Sum_probs=56.2
Q ss_pred cEEEEEEEcCCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccC----CcHHHHHHH
Q 003958 165 REVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY----NRGPVVFHV 240 (784)
Q Consensus 165 ~~v~ii~~d~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~----~~~~~~~~~ 240 (784)
.+|.+.....+.-.-....+...++.+|++|..-.. ... ...++..+++.++++|.+.+.. ..+..++++
T Consensus 89 ~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~---~vp---~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~ 162 (210)
T 1y80_A 89 GKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGV---DIE---PGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTIDA 162 (210)
T ss_dssp CEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCS---SBC---HHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHHH
T ss_pred CEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCC---CCC---HHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHH
Confidence 467777766666666678888889999998874221 112 3455666666789999997643 346677777
Q ss_pred HHHcCCCCCCeEEEec
Q 003958 241 AQYLGMLGTGYVWIAT 256 (784)
Q Consensus 241 a~~~g~~~~~~~wi~~ 256 (784)
.++.+....-.++++.
T Consensus 163 l~~~~~~~~~~v~vGG 178 (210)
T 1y80_A 163 LIAAGLRDRVKVIVGG 178 (210)
T ss_dssp HHHTTCGGGCEEEEES
T ss_pred HHhcCCCCCCeEEEEC
Confidence 8777654323455553
No 326
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=35.85 E-value=1.1e+02 Score=28.09 Aligned_cols=96 Identities=16% Similarity=0.079 Sum_probs=54.3
Q ss_pred HHHHHHHHHcCCcEEEEEEEcC--CCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEecc
Q 003958 153 AAIAEIVDHYGWREVIAIYVDD--DHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH 230 (784)
Q Consensus 153 ~ai~~~l~~~~w~~v~ii~~d~--~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~ 230 (784)
..+.++++..+-++|++|-... +-.....+.+++.+++.|.++....... .+.+++...+. +++.|++.+
T Consensus 16 ~~~~~f~~~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~--~~~~~~~~~l~-----~ad~I~l~G- 87 (206)
T 3l4e_A 16 PLFTEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIAT--ESLGEITTKLR-----KNDFIYVTG- 87 (206)
T ss_dssp HHHHHHSCCCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTT--SCHHHHHHHHH-----HSSEEEECC-
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC--CChHHHHHHHH-----hCCEEEECC-
Confidence 3445555555568999886221 1123467888999999998766433222 23344444443 367888765
Q ss_pred CCcHHHHHHHHHHcCCCC-------CCeEEEecC
Q 003958 231 YNRGPVVFHVAQYLGMLG-------TGYVWIATS 257 (784)
Q Consensus 231 ~~~~~~~~~~a~~~g~~~-------~~~~wi~~~ 257 (784)
.....+++.+++.|+.. .+..+++++
T Consensus 88 -G~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~s 120 (206)
T 3l4e_A 88 -GNTFFLLQELKRTGADKLILEEIAAGKLYIGES 120 (206)
T ss_dssp -SCHHHHHHHHHHHTHHHHHHHHHHTTCEEEEET
T ss_pred -CCHHHHHHHHHHCChHHHHHHHHHcCCeEEEEC
Confidence 33445555555555421 234566666
No 327
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=35.61 E-value=96 Score=30.71 Aligned_cols=81 Identities=4% Similarity=-0.031 Sum_probs=51.2
Q ss_pred CCcEEEEEEEc-CCCcchhHHHHHHHHhcc-CcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCc-HHHHHH
Q 003958 163 GWREVIAIYVD-DDHGRNGIAALGDTLAAK-RCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNR-GPVVFH 239 (784)
Q Consensus 163 ~w~~v~ii~~d-~~~g~~~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~-~~~~~~ 239 (784)
.-..|+++..+ +.|.....+.+++.+++. |+.+..... . .+.......++.+...+.+.||+...... ....++
T Consensus 5 ~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~~g~~l~i~~~-~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 81 (325)
T 2x7x_A 5 PHFRIGVAQCSDDSWRHKMNDEILREAMFYNGVSVEIRSA-G--DDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPIVE 81 (325)
T ss_dssp -CCEEEEEESCCSHHHHHHHHHHHHHHTTSSSCEEEEEEC-T--TCHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHHHH
T ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHHHHcCCcEEEEeCC-C--CCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHH
Confidence 34578888764 334455677888888888 888765331 1 23344456677777788999888754332 245666
Q ss_pred HHHHcCC
Q 003958 240 VAQYLGM 246 (784)
Q Consensus 240 ~a~~~g~ 246 (784)
++.+.|.
T Consensus 82 ~~~~~~i 88 (325)
T 2x7x_A 82 EAYQKGI 88 (325)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7766553
No 328
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=35.40 E-value=13 Score=36.82 Aligned_cols=58 Identities=9% Similarity=0.096 Sum_probs=41.1
Q ss_pred cCCceeehhhhhhhhhccc---cc-ccccc----hhhHHHHHHHHHHHHHHhhccccceeeEeecc
Q 003958 622 KRQVVTIFWFSFSTMFFAH---KE-KTVSA----LGRLVLIIWLFVVLIINSSYTASLTSILTVQK 679 (784)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~---~~-~p~~~----~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~ 679 (784)
..++.+++|+.+.+++..| .. .|... +++.+.....+.++++.+.++|-+.+.+....
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~ 243 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILN 243 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999998888664 22 25433 34777777888889999999999988876443
No 329
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=35.16 E-value=24 Score=33.58 Aligned_cols=74 Identities=14% Similarity=0.092 Sum_probs=50.9
Q ss_pred eeeeHHHHHHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeEEeecCcc---ccceeccccccccEEE
Q 003958 493 SGFCIDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIITNRT---KMADFTQPYIESGLVV 569 (784)
Q Consensus 493 ~G~~~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~~~t~~r~---~~~~fs~p~~~~~~~~ 569 (784)
.|+.-+|+..+.++.|.++++.. +.-..++..+.+|.+|+++..-....+.. ....-..++....+++
T Consensus 18 ~~ll~~L~~~Fek~~gv~V~~~~---------~gSg~ll~qi~~G~aDV~isa~~~~~~~l~~~g~~~~~~~~~~n~lVl 88 (236)
T 3lr1_A 18 SGLLKVLLPPFEKKNNVKVDVIA---------VGTGQALKLGEAGDVDVVFVHARKLEDKFVADGFGVNRKDVMYNDFVI 88 (236)
T ss_dssp HCHHHHHHHHHHHHHTCEEEEEE---------ECHHHHHHHHHTTSCSEEEECCHHHHHHHHHTTSEEEEEEEEECCEEE
T ss_pred hHHHHHHHHHHHHHhCCeEEEEE---------cChHHHHHHHhcCCCCEEeecCchhHHHHHhcCCCcceEEEEcCcEEE
Confidence 46777888889888887755444 34556899999999999876544333221 1112245788899999
Q ss_pred EEeccC
Q 003958 570 VAPVRK 575 (784)
Q Consensus 570 ~~~~~~ 575 (784)
++|...
T Consensus 89 V~P~~~ 94 (236)
T 3lr1_A 89 VGPKND 94 (236)
T ss_dssp EECTTC
T ss_pred EEECCC
Confidence 998765
No 330
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=34.96 E-value=1.6e+02 Score=26.20 Aligned_cols=62 Identities=18% Similarity=0.167 Sum_probs=41.2
Q ss_pred cEEEEEEEcCC--Cc---chhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEec
Q 003958 165 REVIAIYVDDD--HG---RNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHT 229 (784)
Q Consensus 165 ~~v~ii~~d~~--~g---~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~ 229 (784)
-+++||...|+ .| ......+.+.+++.|+.+.....++ .+...+...+++..+ ++|+||..+
T Consensus 4 ~~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~--Dd~~~I~~~l~~a~~-~~DlVittG 70 (172)
T 3kbq_A 4 KNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVM--DDLDEIGWAFRVALE-VSDLVVSSG 70 (172)
T ss_dssp CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEEC--SCHHHHHHHHHHHHH-HCSEEEEES
T ss_pred CEEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeC--CCHHHHHHHHHHHHh-cCCEEEEcC
Confidence 35677765443 12 2446678888888898888777776 355667777766543 378888864
No 331
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=34.73 E-value=96 Score=30.04 Aligned_cols=81 Identities=11% Similarity=-0.018 Sum_probs=51.2
Q ss_pred cEEEEEEEc--CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccC-CcHHHHHHHH
Q 003958 165 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY-NRGPVVFHVA 241 (784)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~-~~~~~~~~~a 241 (784)
+.|+++..+ +.|.....+.+++.+++.|..+....... ..+...-..+++.+...+.|.||+.... ......++++
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~ 80 (288)
T 1gud_A 2 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPS-EGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARA 80 (288)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEECSS-TTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHHHH
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCCC-CCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHH
Confidence 467888754 55666778888888888898766533101 1233344456777777789998886443 3334566777
Q ss_pred HHcCC
Q 003958 242 QYLGM 246 (784)
Q Consensus 242 ~~~g~ 246 (784)
.+.|.
T Consensus 81 ~~~~i 85 (288)
T 1gud_A 81 WKKGI 85 (288)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 66553
No 332
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=34.61 E-value=25 Score=34.38 Aligned_cols=64 Identities=11% Similarity=0.164 Sum_probs=19.4
Q ss_pred CchhhHHHHH--HHHHHHHHHhhhccc--cCCCceEEEEEEeecCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEE
Q 003958 1 MKLSGVMLLM--IFYCELFVYRITAQA--SGRPSVVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQM 75 (784)
Q Consensus 1 M~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~i~IG~i~~~~~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~ 75 (784)
|++|+++.++ ++++++++++|.... +...+.|+|.+-..+ .+.++...++..+.. ||.++++..
T Consensus 4 M~kk~~~~~~~~~~l~~~~l~gc~~~~~~~~~~~~i~i~GSss~--------~p~~~~~a~~f~~~~---p~v~v~~~~ 71 (279)
T 4gd5_A 4 MFKKRLIAIIGTIFIGATAMVGCNSGGSEAKSTNSVSISGSTSV--------GPVMEAEAEAFKTKK---PDVSIEINQ 71 (279)
T ss_dssp ---------------------------------CEEEEEECTTT--------HHHHHHHHHHHHHHS---TTCEEEEEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHccCCCCcccCCCeEEEEEeCcH--------HHHHHHHHHHHHHHC---CCceEEEee
Confidence 5555543332 222333445554432 244567887654322 233444445554443 678888764
No 333
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=34.59 E-value=1.9e+02 Score=28.01 Aligned_cols=87 Identities=14% Similarity=-0.032 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCCcEEEEEEEcCCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccC-
Q 003958 153 AAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY- 231 (784)
Q Consensus 153 ~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~- 231 (784)
..+++-....|-..+.+++...-+ .+..+.++..-+..++.|.....+. +. .++.+.+..+++.|++....
T Consensus 82 ~~~A~~y~~~GA~~IsVltd~~~f-~Gs~~~L~~ir~~v~lPVl~Kdfi~---d~----~qi~ea~~~GAD~VlLi~a~L 153 (272)
T 3tsm_A 82 PALAKAYEEGGAACLSVLTDTPSF-QGAPEFLTAARQACSLPALRKDFLF---DP----YQVYEARSWGADCILIIMASV 153 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECCSTTT-CCCHHHHHHHHHTSSSCEEEESCCC---ST----HHHHHHHHTTCSEEEEETTTS
T ss_pred HHHHHHHHHCCCCEEEEecccccc-CCCHHHHHHHHHhcCCCEEECCccC---CH----HHHHHHHHcCCCEEEEccccc
Confidence 467777888899999999854444 3556666665555577776444332 11 25677788999999998543
Q ss_pred --CcHHHHHHHHHHcCCC
Q 003958 232 --NRGPVVFHVAQYLGML 247 (784)
Q Consensus 232 --~~~~~~~~~a~~~g~~ 247 (784)
.++..++..+.++||.
T Consensus 154 ~~~~l~~l~~~a~~lGl~ 171 (272)
T 3tsm_A 154 DDDLAKELEDTAFALGMD 171 (272)
T ss_dssp CHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHHcCCe
Confidence 4577899999998874
No 334
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=34.58 E-value=47 Score=32.27 Aligned_cols=80 Identities=13% Similarity=0.041 Sum_probs=51.0
Q ss_pred cEEEEEEEc----CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccC-CcHHHHHH
Q 003958 165 REVIAIYVD----DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY-NRGPVVFH 239 (784)
Q Consensus 165 ~~v~ii~~d----~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~-~~~~~~~~ 239 (784)
++|+++..+ +.|.....+.+++.+++.|..+.....-. ..+.......++.+...+.+.||+.... ......++
T Consensus 6 ~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~~ 84 (289)
T 3brs_A 6 YYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMAPEK-EEDYLVQNELIEEAIKRKPDVILLAAADYEKTYDAAK 84 (289)
T ss_dssp CEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCEEEECCCSS-TTCHHHHHHHHHHHHHTCCSEEEECCSCTTTTHHHHT
T ss_pred cEEEEEeCCCCCCchHHHHHHHHHHHHHHHcCCEEEEecCCC-CCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHHH
Confidence 468888753 45667778888999999998776432110 1233444566777777889998887543 33335566
Q ss_pred HHHHcC
Q 003958 240 VAQYLG 245 (784)
Q Consensus 240 ~a~~~g 245 (784)
++.+.|
T Consensus 85 ~~~~~~ 90 (289)
T 3brs_A 85 EIKDAG 90 (289)
T ss_dssp TTGGGT
T ss_pred HHHHCC
Confidence 665544
No 335
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=34.52 E-value=1e+02 Score=28.01 Aligned_cols=67 Identities=18% Similarity=0.074 Sum_probs=45.6
Q ss_pred cCCcEEEEEEEcCC-----CcchhHHHHHHHHhc---cCcEEEEeeccCCCCChhHHHHHHHHhhc-CCceEEEEecc
Q 003958 162 YGWREVIAIYVDDD-----HGRNGIAALGDTLAA---KRCRISFKAPLSVEATEDEITDLLVKVAL-TESRIIVVHTH 230 (784)
Q Consensus 162 ~~w~~v~ii~~d~~-----~g~~~~~~l~~~l~~---~gi~v~~~~~~~~~~~~~d~~~~l~~l~~-~~~~vIvl~~~ 230 (784)
+.--+++||...|+ .-......+.+.+++ .|..+.....++ .+...+...+++..+ .++|+||..+.
T Consensus 12 ~~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~--Dd~~~I~~al~~a~~~~~~DlVIttGG 87 (189)
T 1jlj_A 12 DHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVP--DEIEEIKETLIDWCDEKELNLILTTGG 87 (189)
T ss_dssp -CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEEC--SCHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred cCCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeC--CCHHHHHHHHHHHhhcCCCCEEEEcCC
Confidence 44457888876543 122345678888887 788888777777 456677788877654 47899998744
No 336
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=34.21 E-value=3.8e+02 Score=27.01 Aligned_cols=133 Identities=14% Similarity=0.273 Sum_probs=75.8
Q ss_pred EEEEEeecCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCchhhHHHH
Q 003958 33 NIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVTSHVV 112 (784)
Q Consensus 33 ~IG~i~~~~~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s~~~~~v 112 (784)
.|+.+|...+. ..+..++.|+.++ +|..+.+...++.-.-.+.+.-..+.++.-+++|+-=... ...+
T Consensus 43 ~la~lF~epST---RTR~SFE~A~~~L-------Gg~vi~l~~~~ssl~kgEsl~DTarvLs~y~D~IviR~~~--~~~~ 110 (355)
T 4a8p_A 43 SLGMIFQQSST---RTRVSFETAMEQL-------GGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVER--HHSI 110 (355)
T ss_dssp EEEEEESSCCS---HHHHHHHHHHHHT-------TCEEEEECBTTBCBTTTBCHHHHHHHHTTTCSEEEEECSS--HHHH
T ss_pred EEEEEecCCCh---hhHhhHHHHHHHc-------CCeEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEecCc--HHHH
Confidence 57788876542 5678899999884 4555555443443332333444445556555555432222 1233
Q ss_pred HHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHH---HHHc--C--C--cEEEEEEEcCCCcchhHHH
Q 003958 113 SHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEI---VDHY--G--W--REVIAIYVDDDHGRNGIAA 183 (784)
Q Consensus 113 a~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~---l~~~--~--w--~~v~ii~~d~~~g~~~~~~ 183 (784)
..+++..++|+|.-+ + +...| .++++++ .+++ | + .+|+++. |. ......
T Consensus 111 ~~lA~~~~vPVINag--~----~~~HP------------tQaLaDl~TI~E~~~~G~~l~glkva~vG--D~--~rva~S 168 (355)
T 4a8p_A 111 VDLANCATIPVINGM--S----DYNHP------------TQELGDLCTMVEHLPEGKKLEDCKVVFVG--DA--TQVCFS 168 (355)
T ss_dssp HHHHHHCSSCEEECC--C----SSCCH------------HHHHHHHHHHHHTCCTTCCGGGCEEEEES--CC--CHHHHH
T ss_pred HHHHHhCCCCEEeCC--C----CCCCc------------HHHHHHHHHHHHHhhcCCCCCCCEEEEEC--CC--chhHHH
Confidence 455677789999732 2 11112 3566665 3566 5 3 5666654 32 456677
Q ss_pred HHHHHhccCcEEEEee
Q 003958 184 LGDTLAAKRCRISFKA 199 (784)
Q Consensus 184 l~~~l~~~gi~v~~~~ 199 (784)
+-..+...|.++....
T Consensus 169 l~~~~~~~G~~v~~~~ 184 (355)
T 4a8p_A 169 LGLITTKMGMNFVHFG 184 (355)
T ss_dssp HHHHHHHTTCEEEEEC
T ss_pred HHHHHHHcCCEEEEEC
Confidence 7777888888776543
No 337
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=33.81 E-value=95 Score=29.69 Aligned_cols=86 Identities=12% Similarity=0.065 Sum_probs=58.2
Q ss_pred HHHHHHHHHcCCcEEEEEEEcCCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccC-
Q 003958 153 AAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY- 231 (784)
Q Consensus 153 ~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~- 231 (784)
..+++..... -.-+.+++ |..|..+..+.++..-+.-++.|.....+. ..+ ++.+.+..++|+|++.+..
T Consensus 64 ~~iA~~y~~~-A~~IsVlT-d~~~F~gs~~dL~~ir~~v~lPvLrKDfi~-----~~~--qi~ea~~~GAD~ilLi~a~l 134 (251)
T 1i4n_A 64 EDFIRMYDEL-ADAISILT-EKHYFKGDPAFVRAARNLTCRPILAKDFYI-----DTV--QVKLASSVGADAILIIARIL 134 (251)
T ss_dssp HHHHHHHHHH-CSEEEEEC-CCSSSCCCTHHHHHHHTTCCSCEEEECCCC-----STH--HHHHHHHTTCSEEEEEGGGS
T ss_pred HHHHHHHHHh-CCceEEEe-cccccCCCHHHHHHHHHhCCCCEEEeeCCC-----CHH--HHHHHHHcCCCEEEEecccC
Confidence 4455555555 66777776 555666666777766555577776554332 123 4666888999999998664
Q ss_pred --CcHHHHHHHHHHcCCC
Q 003958 232 --NRGPVVFHVAQYLGML 247 (784)
Q Consensus 232 --~~~~~~~~~a~~~g~~ 247 (784)
..+..+++.++++||.
T Consensus 135 ~~~~l~~l~~~a~~lGl~ 152 (251)
T 1i4n_A 135 TAEQIKEIYEAAEELGMD 152 (251)
T ss_dssp CHHHHHHHHHHHHTTTCE
T ss_pred CHHHHHHHHHHHHHcCCe
Confidence 4688899999998875
No 338
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=33.41 E-value=1.1e+02 Score=29.73 Aligned_cols=73 Identities=10% Similarity=-0.026 Sum_probs=48.5
Q ss_pred HHHHHHcCCcEEEEEEEc--CCCcc-hhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccC
Q 003958 156 AEIVDHYGWREVIAIYVD--DDHGR-NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY 231 (784)
Q Consensus 156 ~~~l~~~~w~~v~ii~~d--~~~g~-~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~ 231 (784)
++-|+.-+-+.|+++..+ +.|.. ...+.+++.+++.|..+.....- .+.......++.+...+.|.||+....
T Consensus 5 Ar~L~~~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdGiIi~~~~ 80 (301)
T 3miz_A 5 ARLIRSSRSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANTG---GSSEREVEIWKMFQSHRIDGVLYVTMY 80 (301)
T ss_dssp -------CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEECT---TCHHHHHHHHHHHHHTTCSEEEEEEEE
T ss_pred HHHHhhCCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEeCC---CChHHHHHHHHHHHhCCCCEEEEecCC
Confidence 344555556789999865 45666 88999999999999887654321 244445677788888889998887543
No 339
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=33.18 E-value=1e+02 Score=25.48 Aligned_cols=56 Identities=13% Similarity=0.068 Sum_probs=38.0
Q ss_pred hhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEecc--CCcHHHHHHHHHH
Q 003958 179 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH--YNRGPVVFHVAQY 243 (784)
Q Consensus 179 ~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~--~~~~~~~~~~a~~ 243 (784)
...+.++..+++.|..+.. .. + ....+..+++..+++|++... ..+...++++.++
T Consensus 17 ~~~~~l~~~l~~~g~~v~~---~~---~---~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~ 74 (140)
T 3grc_A 17 DIARLLNLMLEKGGFDSDM---VH---S---AAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRR 74 (140)
T ss_dssp HHHHHHHHHHHHTTCEEEE---EC---S---HHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCeEEE---EC---C---HHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 3567777888888877542 21 2 345566667788999999744 4567788888876
No 340
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=32.98 E-value=2.8e+02 Score=25.61 Aligned_cols=86 Identities=8% Similarity=-0.004 Sum_probs=57.8
Q ss_pred cEEEEEEEcCCCcchhHHHHHHHHhccCcEEEEee-ccCCCCChhHHHHHHHHhhcCCceEEEE--eccC----CcHHHH
Q 003958 165 REVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKA-PLSVEATEDEITDLLVKVALTESRIIVV--HTHY----NRGPVV 237 (784)
Q Consensus 165 ~~v~ii~~d~~~g~~~~~~l~~~l~~~gi~v~~~~-~~~~~~~~~d~~~~l~~l~~~~~~vIvl--~~~~----~~~~~~ 237 (784)
.+|.+.....+.-.-+...+...++.+|++|..-- ..| ...+++.+++.++++|.+ .+.. .....+
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp-------~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~ 165 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVL-------NENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDL 165 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCC-------HHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHH
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCC-------HHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHH
Confidence 46666666666666667788888999999886432 122 456677788889999999 5433 456778
Q ss_pred HHHHHHcCCCCCCeEEEecC
Q 003958 238 FHVAQYLGMLGTGYVWIATS 257 (784)
Q Consensus 238 ~~~a~~~g~~~~~~~wi~~~ 257 (784)
++++++.|+...-.+|++..
T Consensus 166 i~~l~~~~~~~~v~v~vGG~ 185 (215)
T 3ezx_A 166 MDRLNEEKLRDSVKCMFGGA 185 (215)
T ss_dssp HHHHHHTTCGGGSEEEEESS
T ss_pred HHHHHHcCCCCCCEEEEECC
Confidence 88888887632234566543
No 341
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=32.77 E-value=1.9e+02 Score=25.30 Aligned_cols=21 Identities=10% Similarity=-0.069 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHcCCcEEEEE
Q 003958 150 YQMAAIAEIVDHYGWREVIAI 170 (784)
Q Consensus 150 ~~~~ai~~~l~~~~w~~v~ii 170 (784)
.|-..+-++....||.-+.++
T Consensus 26 ~Q~~~l~~~a~~~g~~i~~~~ 46 (167)
T 3guv_A 26 AQKSRMKAFAIYNDYEIVGEY 46 (167)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEEE
Confidence 344455555555566544433
No 342
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=32.45 E-value=3.4 Score=23.69 Aligned_cols=17 Identities=18% Similarity=0.610 Sum_probs=13.2
Q ss_pred CCceeehhhhhhhhhcc
Q 003958 623 RQVVTIFWFSFSTMFFA 639 (784)
Q Consensus 623 ~~~~~~~~~~~~~~~~~ 639 (784)
.++..++||+|+.++..
T Consensus 7 ~~l~aa~wF~WGvllns 23 (27)
T 2nr1_A 7 LTLSSAMWFSWGVLLNS 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eehhhhHHHhhHhheec
Confidence 45678899999998754
No 343
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=32.27 E-value=66 Score=32.09 Aligned_cols=79 Identities=4% Similarity=-0.061 Sum_probs=51.1
Q ss_pred cEEEEEEEc--CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCC--ceEEEEeccCCc-HHHHHH
Q 003958 165 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTE--SRIIVVHTHYNR-GPVVFH 239 (784)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~--~~vIvl~~~~~~-~~~~~~ 239 (784)
+.|+++..+ +.|.....+.+++.+++.|..+..... . .+.......++.+.+.+ .+.||+...... ....++
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~-~--~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~~~~~ 82 (332)
T 2rjo_A 6 TTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLTT-E--GSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVIVE 82 (332)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEEC-T--TCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHHHHHH
T ss_pred cEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecC-C--CCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHHHHHH
Confidence 468888853 456667788888889889987765321 1 23344456677776677 999888654332 335666
Q ss_pred HHHHcCC
Q 003958 240 VAQYLGM 246 (784)
Q Consensus 240 ~a~~~g~ 246 (784)
.+.+.+.
T Consensus 83 ~~~~~~i 89 (332)
T 2rjo_A 83 ACSKAGA 89 (332)
T ss_dssp HHHHHTC
T ss_pred HHHHCCC
Confidence 7766553
No 344
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=32.18 E-value=85 Score=30.74 Aligned_cols=52 Identities=13% Similarity=0.150 Sum_probs=40.2
Q ss_pred EEEecCCCCHHHHHHHH-HHHHhc-CceEEEccCchhhHHHHHHhhhcCCccEE
Q 003958 73 LQMQDCNHSGFLALAEA-LHLMEG-QTVAIIGPQDAVTSHVVSHVANELQVPLL 124 (784)
Q Consensus 73 ~~~~D~~~~~~~a~~~~-~~li~~-~v~aiiGp~~s~~~~~va~~~~~~~ip~I 124 (784)
+...|+=|+...-.+.+ .+|..+ .+..|||+..|+.+..+.++|...+.|..
T Consensus 186 ~~~~~tIC~AT~~RQ~av~~la~~~D~miVVGg~nSSNT~rL~eia~~~~~~ty 239 (297)
T 3dnf_A 186 VKVINTICNATSLRQESVKKLAPEVDVMIIIGGKNSGNTRRLYYISKELNPNTY 239 (297)
T ss_dssp EEEECCCCSHHHHHHHHHHHHGGGSSEEEEESCTTCHHHHHHHHHHHHHCSSEE
T ss_pred CCCCCCccHHHHHHHHHHHHHHhhCCEEEEECCCCCchhHHHHHHHHhcCCCEE
Confidence 34678888777666544 455554 78888999999999999999999888754
No 345
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=32.12 E-value=90 Score=33.05 Aligned_cols=145 Identities=9% Similarity=0.017 Sum_probs=90.7
Q ss_pred CCHHHHHHHHHHHHhcCceEEE--ccCchh-------hHHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHH
Q 003958 80 HSGFLALAEALHLMEGQTVAII--GPQDAV-------TSHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQY 150 (784)
Q Consensus 80 ~~~~~a~~~~~~li~~~v~aii--Gp~~s~-------~~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~ 150 (784)
-.+..+...+.+++..++.+++ ....++ ....+...++..++.+|.+.+.--.....+.. ....|..
T Consensus 72 vp~~~~~~~v~e~~~~Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~viGPnc~Gv~~~~~~~~--~~~~~~~-- 147 (457)
T 2csu_A 72 VPKRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIGPNCVGIMNTHVDLN--ATFITVA-- 147 (457)
T ss_dssp SCHHHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEECSSCCEEEEGGGTEE--EESSCCC--
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecCCCCccccccHHHHHHHHHHHHHcCCEEEcCCcceEEccCCCce--eeecCCC--
Confidence 4566777777788877776543 222211 24567788899999999776641111111111 1122321
Q ss_pred HHHHHHHHHHHcCCcEEEEEEEcCCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhc-CCceEEEEec
Q 003958 151 QMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL-TESRIIVVHT 229 (784)
Q Consensus 151 ~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~-~~~~vIvl~~ 229 (784)
.. -+|++|..... ....+...+.+.|+-+.....+-.. ...++.+.++.+.+ .++++|+++.
T Consensus 148 ----------~~--G~v~~vsqSG~----~~~~~~~~~~~~g~G~s~~vs~G~~-~~~~~~d~l~~~~~D~~t~~I~l~~ 210 (457)
T 2csu_A 148 ----------KK--GNVAFISQSGA----LGAGIVYKTIKEDIGFSKFISVGNM-ADVDFAELMEYLADTEEDKAIALYI 210 (457)
T ss_dssp ----------EE--CSEEEEESCHH----HHHHHHHHHHHTTCEESEEEECTTC-CSSCHHHHHHHHTTCSSCCEEEEEE
T ss_pred ----------CC--CCEEEEeCCHH----HHHHHHHHHHhcCCCeeEEEECCCc-CCCCHHHHHHHHhcCCCCCEEEEEE
Confidence 11 56899986543 3455666677777766655555433 34567788888765 6899999998
Q ss_pred cC-CcHHHHHHHHHHcC
Q 003958 230 HY-NRGPVVFHVAQYLG 245 (784)
Q Consensus 230 ~~-~~~~~~~~~a~~~g 245 (784)
.. .+.+.+++.+++..
T Consensus 211 E~i~~~~~f~~~a~~~~ 227 (457)
T 2csu_A 211 EGVRNGKKFMEVAKRVT 227 (457)
T ss_dssp SCCSCHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHhc
Confidence 87 77899999888764
No 346
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=32.07 E-value=89 Score=30.39 Aligned_cols=79 Identities=10% Similarity=0.072 Sum_probs=52.0
Q ss_pred CCcEEEEEEE------cCCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHH
Q 003958 163 GWREVIAIYV------DDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPV 236 (784)
Q Consensus 163 ~w~~v~ii~~------d~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~ 236 (784)
.-+.|+++.. ++.|.....+.+++.+++.|..+.....-. ......+++.+...+.|.||+....... .
T Consensus 5 ~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~----~~~~~~~~~~l~~~~vdGiIi~~~~~~~-~ 79 (294)
T 3qk7_A 5 RTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEP----GEKYQSLIHLVETRRVDALIVAHTQPED-F 79 (294)
T ss_dssp CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECT----TCCCHHHHHHHHHTCCSEEEECSCCSSC-H
T ss_pred ccceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCC----hhhHHHHHHHHHcCCCCEEEEeCCCCCh-H
Confidence 3467888887 345667778889999999998876544322 1223455666666789998887544322 5
Q ss_pred HHHHHHHcCC
Q 003958 237 VFHVAQYLGM 246 (784)
Q Consensus 237 ~~~~a~~~g~ 246 (784)
.++.+.+.|.
T Consensus 80 ~~~~l~~~~i 89 (294)
T 3qk7_A 80 RLQYLQKQNF 89 (294)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhCCC
Confidence 6667776654
No 347
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=31.86 E-value=92 Score=31.75 Aligned_cols=32 Identities=25% Similarity=0.126 Sum_probs=22.9
Q ss_pred HHHHHhcCCcCCCeeEEEechhhhHHHHcCCCCeEEeC
Q 003958 729 YAKALKDGPHKGGVAAVVDDRAYAELFLSTRCEFSIVG 766 (784)
Q Consensus 729 ~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~c~l~~~~ 766 (784)
...+|.+ |++||++...++.....++ +..++.
T Consensus 210 ~~~aL~~----G~vDA~~~~~p~~~~~~~~--g~~~l~ 241 (365)
T 2de3_A 210 QAAVLAS----GDVDALYSWLPWAGELQAT--GARPVV 241 (365)
T ss_dssp HHHHHHS----SSCSEEEEEHHHHHHHHHT--TEEESS
T ss_pred HHHHHhC----CCcCEEEEcchhHHHHHhC--CCEEEE
Confidence 6889999 8999999887877665443 344443
No 348
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=31.82 E-value=1.2e+02 Score=29.15 Aligned_cols=76 Identities=5% Similarity=-0.031 Sum_probs=49.8
Q ss_pred CCcEEEEEEEc--CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHH
Q 003958 163 GWREVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHV 240 (784)
Q Consensus 163 ~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~ 240 (784)
.-+.|+++..+ +.|.....+.+++.+++.|..+..... . .+.......++.+...+.+.||+...... ...++.
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~ 82 (285)
T 3c3k_A 7 KTGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCNT-E--SDLARSRSCLTLLSGKMVDGVITMDALSE-LPELQN 82 (285)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-T--TCHHHHHHHTHHHHTTCCSEEEECCCGGG-HHHHHH
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeC-C--CCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHH
Confidence 34678888864 556677788899999999988765321 1 23344456677777788999888643222 234555
Q ss_pred HH
Q 003958 241 AQ 242 (784)
Q Consensus 241 a~ 242 (784)
+.
T Consensus 83 l~ 84 (285)
T 3c3k_A 83 II 84 (285)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 349
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=31.68 E-value=1.2e+02 Score=25.32 Aligned_cols=81 Identities=6% Similarity=0.028 Sum_probs=0.0
Q ss_pred EEEEE-EcCCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEecc-------CC-cHHHH
Q 003958 167 VIAIY-VDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH-------YN-RGPVV 237 (784)
Q Consensus 167 v~ii~-~d~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~-------~~-~~~~~ 237 (784)
|.|+| +..-..+..++.+.+.+.+.|..+.....-. .+..++ .+.+.|++.+. ++ .+..+
T Consensus 1 i~I~Y~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~--~~~~~l---------~~~d~iiig~pty~~g~~p~~~~~~f 69 (138)
T 5nul_A 1 MKIVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSD--VNIDEL---------LNEDILILGCSAMTDEVLEESEFEPF 69 (138)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHHTTCCCEEEEGGG--CCHHHH---------TTCSEEEEEECCBTTTBCCTTTHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEEhhh--CCHHHH---------hhCCEEEEEcCccCCCCCChHHHHHH
Q ss_pred HHHHHHcCCCCCCeEEEecCcc
Q 003958 238 FHVAQYLGMLGTGYVWIATSWL 259 (784)
Q Consensus 238 ~~~a~~~g~~~~~~~wi~~~~~ 259 (784)
++..... +.+.....+++..+
T Consensus 70 l~~l~~~-l~~k~~~~f~t~g~ 90 (138)
T 5nul_A 70 IEEISTK-ISGKKVALFGSYGW 90 (138)
T ss_dssp HHHHGGG-CTTCEEEEEEEESS
T ss_pred HHHHHhh-cCCCEEEEEEecCC
No 350
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=31.36 E-value=1.2e+02 Score=28.89 Aligned_cols=93 Identities=15% Similarity=0.118 Sum_probs=65.4
Q ss_pred HHHHHHHHHcCCcEEEEEEEc--CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEecc
Q 003958 153 AAIAEIVDHYGWREVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH 230 (784)
Q Consensus 153 ~ai~~~l~~~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~ 230 (784)
...++.+++.|.+.|=+.... .+......+.+++.+++.|+.+........ .....+...+...+.-+++.|++...
T Consensus 33 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~-~~~~~~~~~i~~A~~lGa~~v~~~p~ 111 (257)
T 3lmz_A 33 DTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPIYM-KSEEEIDRAFDYAKRVGVKLIVGVPN 111 (257)
T ss_dssp HHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEEEE-CSHHHHHHHHHHHHHHTCSEEEEEEC
T ss_pred HHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEecccc-CCHHHHHHHHHHHHHhCCCEEEecCC
Confidence 567777888999888876431 122345578999999999998775443221 34566777777777778888888755
Q ss_pred CCcHHHHHHHHHHcCC
Q 003958 231 YNRGPVVFHVAQYLGM 246 (784)
Q Consensus 231 ~~~~~~~~~~a~~~g~ 246 (784)
.+....+...|++.|+
T Consensus 112 ~~~l~~l~~~a~~~gv 127 (257)
T 3lmz_A 112 YELLPYVDKKVKEYDF 127 (257)
T ss_dssp GGGHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCC
Confidence 5667777888877775
No 351
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=31.31 E-value=22 Score=33.02 Aligned_cols=31 Identities=19% Similarity=0.248 Sum_probs=26.9
Q ss_pred ceEEEccCchhhHHHHHHhhhcCCccEEecc
Q 003958 97 TVAIIGPQDAVTSHVVSHVANELQVPLLSFS 127 (784)
Q Consensus 97 v~aiiGp~~s~~~~~va~~~~~~~ip~Is~~ 127 (784)
+.+++||.+|+-......+++.+++|+||.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istG 32 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTG 32 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcHH
Confidence 4678999999988888889999999999864
No 352
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=30.93 E-value=1.4e+02 Score=24.01 Aligned_cols=57 Identities=14% Similarity=-0.039 Sum_probs=37.0
Q ss_pred hHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEecc--CCcHHHHHHHHHHcC
Q 003958 180 GIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH--YNRGPVVFHVAQYLG 245 (784)
Q Consensus 180 ~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~--~~~~~~~~~~a~~~g 245 (784)
..+.++..+++.|..+.. .. + ....++.+++..+++|++... ..+...++++.++..
T Consensus 14 ~~~~l~~~l~~~g~~v~~---~~---~---~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~ 72 (122)
T 3gl9_A 14 LRKIVSFNLKKEGYEVIE---AE---N---GQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKE 72 (122)
T ss_dssp HHHHHHHHHHHTTCEEEE---ES---S---HHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTST
T ss_pred HHHHHHHHHHHCCcEEEE---eC---C---HHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcc
Confidence 456677777777876542 11 2 335566677778999998744 345677888777643
No 353
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=30.84 E-value=3.9e+02 Score=26.20 Aligned_cols=119 Identities=13% Similarity=0.008 Sum_probs=70.9
Q ss_pred ceEEEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcC-ceEEEccCchh
Q 003958 30 SVVNIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQ-TVAIIGPQDAV 107 (784)
Q Consensus 30 ~~i~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~-v~aiiGp~~s~ 107 (784)
+-=+||++.... ......-..|+.-|+++. |.. ........+...+.+.+.+++.++ +.+|+... ..
T Consensus 173 G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--------g~~--~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~~~n-d~ 241 (333)
T 3jvd_A 173 SGMNIAALVGEESLSTTQERMRGISHAASIY--------GAE--VTFHFGHYSVESGEEMAQVVFNNGLPDALIVAS-PR 241 (333)
T ss_dssp SSCEEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCE--EEEEECCSSHHHHHHHHHHHHHTCCCSEEEECC-HH
T ss_pred CCCeEEEEeCCCCCccHHHHHHHHHHHHHHC--------CCC--EEEecCCCCHHHHHHHHHHHhcCCCCcEEEECC-HH
Confidence 344677776553 223345567888888773 223 222214567788888888888764 78998744 44
Q ss_pred hHHHHHHhhhcCC------ccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHH
Q 003958 108 TSHVVSHVANELQ------VPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDH 161 (784)
Q Consensus 108 ~~~~va~~~~~~~------ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~ 161 (784)
.+..+...+...+ +.++++.... +.....|.+.....+...++...+++|..
T Consensus 242 ~A~g~~~al~~~G~~vP~disvig~D~~~--~~~~~~p~lttv~~~~~~~g~~Av~~L~~ 299 (333)
T 3jvd_A 242 LMAGVMRAFTRLNVRVPHDVVIGGYDDPE--WYSFVGAGITTFVPPHEEMGKEAVRLLVD 299 (333)
T ss_dssp HHHHHHHHHHHTTCCTTTTCEEEEESCCG--GGGGSTTSCEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCceEEEEECChH--HHHhcCCCceEEecCHHHHHHHHHHHHHH
Confidence 4444555555554 3366654322 33323466666677778888888887643
No 354
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=30.58 E-value=1.1e+02 Score=27.23 Aligned_cols=63 Identities=10% Similarity=0.090 Sum_probs=42.8
Q ss_pred EEEEEEEcCC-------Cc---chhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhh-cCCceEEEEecc
Q 003958 166 EVIAIYVDDD-------HG---RNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVA-LTESRIIVVHTH 230 (784)
Q Consensus 166 ~v~ii~~d~~-------~g---~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~-~~~~~vIvl~~~ 230 (784)
+++||+..|. .| ......+.+.+++.|+.+.....++ .+...+...+.+.. ..++|+|+..+.
T Consensus 17 ~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~--Dd~~~i~~al~~~~a~~~~DlVittGG 90 (178)
T 3iwt_A 17 NFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVP--DDKIKILKAFTDALSIDEVDVIISTGG 90 (178)
T ss_dssp EEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEEC--SCHHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred EEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeC--CCHHHHHHHHHHHHhcCCCCEEEecCC
Confidence 6888875431 01 2234678888999999998887777 34556666666544 457899998744
No 355
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=30.32 E-value=20 Score=33.74 Aligned_cols=31 Identities=10% Similarity=0.197 Sum_probs=27.9
Q ss_pred CceEEEccCchhhHHHHHHhhhcCCccEEec
Q 003958 96 QTVAIIGPQDAVTSHVVSHVANELQVPLLSF 126 (784)
Q Consensus 96 ~v~aiiGp~~s~~~~~va~~~~~~~ip~Is~ 126 (784)
++..|+||.+|+-......+++.+++++||.
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~hIst 60 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFNHLSS 60 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCEEECH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCceEcH
Confidence 7889999999998888888999999999985
No 356
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=30.24 E-value=63 Score=31.53 Aligned_cols=80 Identities=9% Similarity=-0.055 Sum_probs=52.6
Q ss_pred cEEEEEEEc--CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccC-CcHHHHHHHH
Q 003958 165 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY-NRGPVVFHVA 241 (784)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~-~~~~~~~~~a 241 (784)
.+|+++..+ +.|.....+.+++.+++.|..+.....-. ..+.......++.+...+.+.||+.... ......++++
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~ 84 (304)
T 3o1i_D 6 EKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGG-YPNKSRQEQQLALCTQWGANAIILGTVDPHAYEHNLKSW 84 (304)
T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECSS-TTCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTTTHHHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCCC-CCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHH
Confidence 578888864 55667778899999999998876543221 0144455667777777789999887443 3234456666
Q ss_pred HHcCC
Q 003958 242 QYLGM 246 (784)
Q Consensus 242 ~~~g~ 246 (784)
. .|.
T Consensus 85 ~-~~i 88 (304)
T 3o1i_D 85 V-GNT 88 (304)
T ss_dssp T-TTS
T ss_pred c-CCC
Confidence 5 553
No 357
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=30.21 E-value=83 Score=30.44 Aligned_cols=78 Identities=5% Similarity=-0.153 Sum_probs=49.3
Q ss_pred cEEEEEEEc------CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHH
Q 003958 165 REVIAIYVD------DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVF 238 (784)
Q Consensus 165 ~~v~ii~~d------~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~ 238 (784)
+.|+++..+ +.|.....+.+++.+++.|..+..... . .+.......++.+...+.+.||+....... ..+
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~~~ 80 (287)
T 3bbl_A 5 FMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPFPF-S--EDRSQIDIYRDLIRSGNVDGFVLSSINYND-PRV 80 (287)
T ss_dssp CEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEECCC-C--SSTTCCHHHHHHHHTTCCSEEEECSCCTTC-HHH
T ss_pred eEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEEeC-C--CchHHHHHHHHHHHcCCCCEEEEeecCCCc-HHH
Confidence 467777644 456777888999999999988765321 1 122223456777777889998887543222 456
Q ss_pred HHHHHcCC
Q 003958 239 HVAQYLGM 246 (784)
Q Consensus 239 ~~a~~~g~ 246 (784)
+.+.+.+.
T Consensus 81 ~~l~~~~i 88 (287)
T 3bbl_A 81 QFLLKQKF 88 (287)
T ss_dssp HHHHHTTC
T ss_pred HHHHhcCC
Confidence 66666553
No 358
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=30.20 E-value=1.7e+02 Score=22.39 Aligned_cols=36 Identities=31% Similarity=0.403 Sum_probs=19.2
Q ss_pred ceEeecCChHHHHHHHHHHHHHcCCcEEEEEEEcCC
Q 003958 140 YFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDD 175 (784)
Q Consensus 140 ~~~r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~ 175 (784)
+-.|++.+.+..-..+-++.++|+-+-+.++..|.+
T Consensus 27 fkvrtvrspqelkdsieelvkkynativvvvvddke 62 (134)
T 2l69_A 27 FKVRTVRSPQELKDSIEELVKKYNATIVVVVVDDKE 62 (134)
T ss_dssp CEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSSHH
T ss_pred ceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEccHH
Confidence 335555555555555555556665555554443333
No 359
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=29.30 E-value=2.4e+02 Score=24.64 Aligned_cols=93 Identities=5% Similarity=-0.060 Sum_probs=55.9
Q ss_pred HHHHHHHHHcCCcEEEEEEEcCCCcchhHHHHHHHHhccCcEEEEeecc--CC--CCChhHHHHHHHHhh-cCCceEEEE
Q 003958 153 AAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPL--SV--EATEDEITDLLVKVA-LTESRIIVV 227 (784)
Q Consensus 153 ~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~gi~v~~~~~~--~~--~~~~~d~~~~l~~l~-~~~~~vIvl 227 (784)
..+.+.+...+--..+..|.+ ..+....+.+.+.+...|+++...... .. ..+..|..-.+..+. ....+.+++
T Consensus 36 ~~l~~~~~~~g~l~~~~~Y~~-~~~~~~~~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~~~d~~vL 114 (165)
T 2qip_A 36 NQFWYVATQEKEVVSAKAYAI-ASNDPKQRQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVIL 114 (165)
T ss_dssp HHHHHHHTTTEEEEEEEEEEC-CCCCHHHHHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHGGGCSEEEE
T ss_pred HHHHHHHhcCCEEEEEEEEEc-cCCchhHHHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhhccCCEEEE
Confidence 355555555554444555632 223245677888888899887643211 11 123445443333332 146788888
Q ss_pred eccCCcHHHHHHHHHHc-CC
Q 003958 228 HTHYNRGPVVFHVAQYL-GM 246 (784)
Q Consensus 228 ~~~~~~~~~~~~~a~~~-g~ 246 (784)
.+...+...+++.+++. |.
T Consensus 115 vSgD~DF~plv~~lr~~~G~ 134 (165)
T 2qip_A 115 VSGDGDFSLLVERIQQRYNK 134 (165)
T ss_dssp ECCCGGGHHHHHHHHHHHCC
T ss_pred EECChhHHHHHHHHHHHcCc
Confidence 88888999999999994 73
No 360
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=29.12 E-value=2.2e+02 Score=28.04 Aligned_cols=134 Identities=12% Similarity=0.132 Sum_probs=73.7
Q ss_pred EEEEEeecCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc-CceEEEc-cCchhhHH
Q 003958 33 NIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG-QTVAIIG-PQDAVTSH 110 (784)
Q Consensus 33 ~IG~i~~~~~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~-~v~aiiG-p~~s~~~~ 110 (784)
.++.+|...+ -..+..++.|+.++ +|..+.+...+++-.--+.+.-..+.++. ++.+|+- ....+...
T Consensus 38 ~la~lF~e~S---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~~~D~iviR~~~~~~~~ 107 (304)
T 3r7f_A 38 FAANLFFEPS---TRTRFSFEVAEKKL-------GMNVLNLDGTSTSVQKGETLYDTIRTLESIGVDVCVIRHSEDEYYE 107 (304)
T ss_dssp EEEEEESSCC---SHHHHHHHHHHHHT-------TCEEEEEETTSTTSCSSSCHHHHHHHHHHHTCCEEEEECSSTTCHH
T ss_pred EEEEEecCCC---hhHHHhHHHHHHHC-------CCeEEEECcccccCCCCCCHHHHHHHHHHhcCCEEEEecCChhHHH
Confidence 4788887654 35678899999884 45556654444433222223333344444 4666653 22333333
Q ss_pred HHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHH---HHcC---CcEEEEEEEcCCCcchhHHHH
Q 003958 111 VVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV---DHYG---WREVIAIYVDDDHGRNGIAAL 184 (784)
Q Consensus 111 ~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l---~~~~---w~~v~ii~~d~~~g~~~~~~l 184 (784)
.+++..++|+|.-+.++ ...| .+++++++ +++| ..+|+++. |.-....+..+
T Consensus 108 ---~la~~~~vPVINagdg~-----~~HP------------tQaLaDl~Ti~e~~g~l~glkva~vG--D~~~~rva~Sl 165 (304)
T 3r7f_A 108 ---ELVSQVNIPILNAGDGC-----GQHP------------TQSLLDLMTIYEEFNTFKGLTVSIHG--DIKHSRVARSN 165 (304)
T ss_dssp ---HHHHHCSSCEEESCCTT-----SCCH------------HHHHHHHHHHHHHHSCCTTCEEEEES--CCTTCHHHHHH
T ss_pred ---HHHHhCCCCEEeCCCCC-----CcCc------------HHHHHHHHHHHHHhCCCCCCEEEEEc--CCCCcchHHHH
Confidence 34566789999732211 1112 35666653 4544 46777664 22222456667
Q ss_pred HHHHhccCcEEEEe
Q 003958 185 GDTLAAKRCRISFK 198 (784)
Q Consensus 185 ~~~l~~~gi~v~~~ 198 (784)
-..+...|.++...
T Consensus 166 ~~~~~~~G~~v~~~ 179 (304)
T 3r7f_A 166 AEVLTRLGARVLFS 179 (304)
T ss_dssp HHHHHHTTCEEEEE
T ss_pred HHHHHHcCCEEEEE
Confidence 77777888876654
No 361
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=29.11 E-value=2e+02 Score=27.54 Aligned_cols=121 Identities=13% Similarity=0.090 Sum_probs=67.7
Q ss_pred EEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc--CceEEEccCchhhH
Q 003958 33 NIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG--QTVAIIGPQDAVTS 109 (784)
Q Consensus 33 ~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~--~v~aiiGp~~s~~~ 109 (784)
+||++.... ......-..|+.-|+++.+-.. .... +.....+...+.+.+.+++.+ .+.+|+... ...+
T Consensus 129 ~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~-d~~a 200 (289)
T 3g85_A 129 SAAAILTESLNDAMDNRNKGFIETCHKNGIKI------SENH-IIAAENSIHGGVDAAKKLMKLKNTPKALFCNS-DSIA 200 (289)
T ss_dssp BCEEEECCCSSHHHHHHHHHHHHHHHHTTCBC------CGGG-EEECCSSHHHHHHHHHHHTTSSSCCSEEEESS-HHHH
T ss_pred EEEEEeCCcccccHHHHHHHHHHHHHHcCCCC------Chhh-eeccCCCHHHHHHHHHHHHcCCCCCcEEEEcC-CHHH
Confidence 466665543 2223345677877777742111 0001 123445777788888888875 688999744 4444
Q ss_pred HHHHHhhhcCC--cc----EEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHHH
Q 003958 110 HVVSHVANELQ--VP----LLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDH 161 (784)
Q Consensus 110 ~~va~~~~~~~--ip----~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~~ 161 (784)
..+...+...+ +| ++++...+..+.....|.+-....+...++...+++|.+
T Consensus 201 ~g~~~al~~~g~~vP~di~vig~d~~~~~~~~~~~p~lttv~~~~~~~g~~a~~~l~~ 258 (289)
T 3g85_A 201 LGVISVLNKRQISIPDDIEIVAIGMNDREYTEFSTPPVTIVDIPIEEMAGTCISLVEK 258 (289)
T ss_dssp HHHHHHHHHTTCCTTTTCEEEEEECSCHHHHHSSSSCCEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCceEEEEeCCCCcchhhccCCCCeEEcCCHHHHHHHHHHHHHH
Confidence 44455555544 33 677652122222222355566667777788888877643
No 362
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=29.09 E-value=2.8e+02 Score=26.89 Aligned_cols=112 Identities=12% Similarity=-0.000 Sum_probs=63.3
Q ss_pred EEEEEEeecCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCchhh---
Q 003958 32 VNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVT--- 108 (784)
Q Consensus 32 i~IG~i~~~~~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s~~--- 108 (784)
=+||++...+...+.....+++-|+++. |.++......+ .....+++.++. +++.+|+.+.+...
T Consensus 141 ~~I~~i~~~~~~~~~~r~~g~~~al~~~--------gi~~~~~~~~~---~~~~~~~~~~l~-~~~dai~~~~D~~a~g~ 208 (302)
T 2qh8_A 141 KSIGVVYNPGEANAVSLMELLKLSAAKH--------GIKLVEATALK---SADVQSATQAIA-EKSDVIYALIDNTVASA 208 (302)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHHHHHHT--------TCEEEEEECSS---GGGHHHHHHHHG-GGCSEEEECSCHHHHTT
T ss_pred cEEEEEecCCCcchHHHHHHHHHHHHHc--------CCEEEEEecCC---hHHHHHHHHHHh-ccCCEEEECCcHhHHHH
Confidence 3677776554323444556777777662 34444333322 233444555565 47888887655432
Q ss_pred HHHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHH
Q 003958 109 SHVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVD 160 (784)
Q Consensus 109 ~~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~ 160 (784)
..++...+...++|++++... .+. .|-+.....+...+++..++++.
T Consensus 209 ~~~l~~~~~~~~i~vig~d~~--~~~---~~~Lttv~~~~~~~G~~Aa~~l~ 255 (302)
T 2qh8_A 209 IEGMIVAANQAKTPVFGAATS--YVE---RGAIASLGFDYYQIGVQTADYVA 255 (302)
T ss_dssp HHHHHHHHHHTTCCEEESSHH--HHH---TTCSEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEECCHH--HHh---CCcEEEEeCCHHHHHHHHHHHHH
Confidence 223444455579999986432 111 15555666777778887777753
No 363
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=28.73 E-value=2.4e+02 Score=23.07 Aligned_cols=56 Identities=9% Similarity=-0.088 Sum_probs=38.2
Q ss_pred hhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEecc--CCcHHHHHHHHHH
Q 003958 179 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH--YNRGPVVFHVAQY 243 (784)
Q Consensus 179 ~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~--~~~~~~~~~~a~~ 243 (784)
...+.+...++..|..|.. .. + ....++.+++..+++|++... ......++++.++
T Consensus 18 ~~~~~l~~~L~~~g~~v~~---~~---~---~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~ 75 (142)
T 3cg4_A 18 HVRIAVKTILSDAGFHIIS---AD---S---GGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILD 75 (142)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ES---S---HHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCeEEEE---eC---C---HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 3567778888888876542 21 2 345566667778999999854 3456788888887
No 364
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=28.51 E-value=1.8e+02 Score=25.26 Aligned_cols=76 Identities=11% Similarity=0.052 Sum_probs=43.5
Q ss_pred cEEEEEEEcCCCcc--hhHHHHHHHHhccCcEEEEeeccCCCCChh-HHHHHHHHhhcCCceEEEEeccC--CcH--HHH
Q 003958 165 REVIAIYVDDDHGR--NGIAALGDTLAAKRCRISFKAPLSVEATED-EITDLLVKVALTESRIIVVHTHY--NRG--PVV 237 (784)
Q Consensus 165 ~~v~ii~~d~~~g~--~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~-d~~~~l~~l~~~~~~vIvl~~~~--~~~--~~~ 237 (784)
+++.|+|... +|. ..++.+.+.+.+.|+.+.... +. .. +....+..+. +.+.||+.+.. ... ..+
T Consensus 5 ~kv~IvY~S~-~GnT~~iA~~ia~~l~~~g~~v~~~~-~~----~~~~~~~~~~~~~--~~d~ii~Gspty~g~~p~~~~ 76 (159)
T 3fni_A 5 TSIGVFYVSE-YGYSDRLAQAIINGITKTGVGVDVVD-LG----AAVDLQELRELVG--RCTGLVIGMSPAASAASIQGA 76 (159)
T ss_dssp CEEEEEECTT-STTHHHHHHHHHHHHHHTTCEEEEEE-SS----SCCCHHHHHHHHH--TEEEEEEECCBTTSHHHHHHH
T ss_pred CEEEEEEECC-ChHHHHHHHHHHHHHHHCCCeEEEEE-Cc----CcCCHHHHHHHHH--hCCEEEEEcCcCCCCccHHHH
Confidence 5789999543 453 557888888888887765332 22 12 3344444443 46777776543 222 245
Q ss_pred HHHHHHcCCCC
Q 003958 238 FHVAQYLGMLG 248 (784)
Q Consensus 238 ~~~a~~~g~~~ 248 (784)
+.......+.+
T Consensus 77 l~~l~~~~~~~ 87 (159)
T 3fni_A 77 LSTILGSVNEK 87 (159)
T ss_dssp HHHHHHHCCTT
T ss_pred HHHHHhhcccC
Confidence 55555544433
No 365
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=28.41 E-value=2e+02 Score=23.54 Aligned_cols=56 Identities=7% Similarity=-0.039 Sum_probs=36.8
Q ss_pred hHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEecc--CCcHHHHHHHHHHc
Q 003958 180 GIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH--YNRGPVVFHVAQYL 244 (784)
Q Consensus 180 ~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~--~~~~~~~~~~a~~~ 244 (784)
..+.++..+++.|..+.. .. + ....+..+.+..+++|++... ..+...++++.++.
T Consensus 16 ~~~~l~~~L~~~g~~v~~---~~---~---~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~ 73 (136)
T 3t6k_A 16 VAEMLELVLRGAGYEVRR---AA---S---GEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQH 73 (136)
T ss_dssp HHHHHHHHHHHTTCEEEE---ES---S---HHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCEEEE---eC---C---HHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcC
Confidence 466777778777876542 21 2 234555666678999999744 34567788888764
No 366
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=28.34 E-value=26 Score=35.34 Aligned_cols=60 Identities=18% Similarity=0.156 Sum_probs=49.0
Q ss_pred cCCceeehhhhhhhhhccc--ccc--cccchhhHHHHHHHHHHHHHHhhccccceeeEeecccc
Q 003958 622 KRQVVTIFWFSFSTMFFAH--KEK--TVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQKLS 681 (784)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~--~~~--p~~~~~R~~~~~w~~~~lvl~~~Yta~L~s~l~~~~~~ 681 (784)
..++.+++||++.++..-| ... |.+..+|+++.+=.+.++++.+.-++-+.+-+..++..
T Consensus 92 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 155 (343)
T 3spc_A 92 VNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKR 155 (343)
T ss_dssp CCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred cCCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 3568899999999998654 434 56888999999999999999999999888888766543
No 367
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=28.28 E-value=2.1e+02 Score=23.60 Aligned_cols=58 Identities=16% Similarity=0.172 Sum_probs=37.4
Q ss_pred hHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccC--CcHHHHHHHHHHc
Q 003958 180 GIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY--NRGPVVFHVAQYL 244 (784)
Q Consensus 180 ~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~--~~~~~~~~~a~~~ 244 (784)
..+.++..+++.|....... .. +....+..+++..+++|++.... .+...++++.++.
T Consensus 17 ~~~~l~~~L~~~~~~~~v~~-~~------~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~ 76 (144)
T 3kht_A 17 DIALIRRVLDRKDIHCQLEF-VD------NGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKP 76 (144)
T ss_dssp HHHHHHHHHHHTTCCEEEEE-ES------SHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSS
T ss_pred HHHHHHHHHHhcCCCeeEEE-EC------CHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 56777788887776522111 11 23456667777889999997543 4566788888763
No 368
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=28.14 E-value=1.7e+02 Score=29.25 Aligned_cols=90 Identities=14% Similarity=0.075 Sum_probs=63.6
Q ss_pred eecCChHHHHHHHHHHHHHcCCcEEEEEEEcCCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCc
Q 003958 143 RTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTES 222 (784)
Q Consensus 143 r~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~ 222 (784)
+..|+.+..++.+.++++..+-++|.|.++.+. ..+.|++.+.+.++.|+. +.+ + ..++...--.++
T Consensus 259 mClPSle~I~rqIk~~vk~~~lksVFIATDa~~----~~~ELk~~L~~~~v~vv~---~~p--e----~a~ID~~I~~~A 325 (362)
T 3zy2_A 259 ICSPSKQQILEQIVEKVGSIGAKSVFVASDKDH----MIDEINEALKPYEIEAHR---QEP--D----DMYTSLAIMGRA 325 (362)
T ss_dssp HHSCCHHHHHHHHHHHHHHHTCSEEEEEESSCC----CHHHHHHHHGGGTCCEEC---CSS--C----CHHHHHHHHHHS
T ss_pred ccCCCHHHHHHHHHHHHHhcCCcEEEEecCCHH----HHHHHHHHhhccCceEEE---eCC--c----hhHHHHHHHHhC
Confidence 457999999999999999999999988885443 478888989877776642 321 2 244555444678
Q ss_pred eEEEEeccCCcHHHHHHHHHHcC
Q 003958 223 RIIVVHTHYNRGPVVFHVAQYLG 245 (784)
Q Consensus 223 ~vIvl~~~~~~~~~~~~~a~~~g 245 (784)
+.+|-.+...-...+.++=.-.|
T Consensus 326 ~~FIGN~~SSFSa~I~rERdi~G 348 (362)
T 3zy2_A 326 DLFVGNCVSTFSHIVKRERDHAG 348 (362)
T ss_dssp SEEEECTTCHHHHHHHHHHHHSS
T ss_pred CEeecCccccccHHHHHHHHhcC
Confidence 88777776666666666655566
No 369
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=27.45 E-value=72 Score=30.97 Aligned_cols=78 Identities=9% Similarity=0.019 Sum_probs=45.6
Q ss_pred CcEEEEEEE--cCCCcchhHHHHHHHHhccCcEEEEe-eccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHH
Q 003958 164 WREVIAIYV--DDDHGRNGIAALGDTLAAKRCRISFK-APLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHV 240 (784)
Q Consensus 164 w~~v~ii~~--d~~~g~~~~~~l~~~l~~~gi~v~~~-~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~ 240 (784)
-++|+++.. ++.|.....+.+++.+++.|..+... .. . .+.......++.+...+.+.||+...... ...++.
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~ 83 (290)
T 3clk_A 8 SNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIVYSG-S--ADPEEQKHALLTAIERPVMGILLLSIALT-DDNLQL 83 (290)
T ss_dssp CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEEC-------------CHHHHHHSSCCSEEEEESCC-----CHHH
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEeCC-C--CCHHHHHHHHHHHHhcCCCEEEEecccCC-HHHHHH
Confidence 457888885 35677778889999999999887653 21 1 12222345667777788999888754322 234555
Q ss_pred HHHcC
Q 003958 241 AQYLG 245 (784)
Q Consensus 241 a~~~g 245 (784)
+.+.+
T Consensus 84 l~~~~ 88 (290)
T 3clk_A 84 LQSSD 88 (290)
T ss_dssp HHCC-
T ss_pred HHhCC
Confidence 55544
No 370
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=27.23 E-value=4.2e+02 Score=25.42 Aligned_cols=70 Identities=13% Similarity=0.065 Sum_probs=42.1
Q ss_pred HHHHHHHHHHC-CCccceEEeeCCCCCCCCChhHHHHHHHc-Cc-ccEEEeeEEeec---CccccceeccccccccEEEE
Q 003958 497 IDVFTAAINLL-PYAVPYKLIPFGDGHNNPSCTELVRLITA-GV-YDAAVGDIAIIT---NRTKMADFTQPYIESGLVVV 570 (784)
Q Consensus 497 ~dl~~~l~~~l-~f~~~~~~~~~~~~~~~~~~~g~i~~l~~-~~-~D~~~~~~~~t~---~r~~~~~fs~p~~~~~~~~~ 570 (784)
-++++.+.++. |.++++.. +....++..+.. |. +|+.++.-.... .....++...||....++++
T Consensus 20 ~~l~~~F~~~~~gi~V~~~~---------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~lvl~ 90 (295)
T 3cij_A 20 KAFKRAFEEKHPNVEVQTEA---------AGSAATIRKVTELGRKADVIATADYTLIQKMMYPEFANWTIMFAKNQIVLA 90 (295)
T ss_dssp HHHHHHHHHHCTTCEEEEEE---------ECHHHHHHHHHTSCCCCSEEEESSTHHHHHHHTTTTCCCCEEEEECCEEEE
T ss_pred HHHHHHHHHHCCCceEEEEe---------CcHHHHHHHHHhCCCCCCEEEEcChhhHHHHHhCCCcceeeEEEeeeEEEE
Confidence 35667777774 88755543 345567888887 64 999875321111 11222344567777788888
Q ss_pred EeccC
Q 003958 571 APVRK 575 (784)
Q Consensus 571 ~~~~~ 575 (784)
+++..
T Consensus 91 ~~~~~ 95 (295)
T 3cij_A 91 YRNDS 95 (295)
T ss_dssp ECTTS
T ss_pred EeCCC
Confidence 86653
No 371
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=27.16 E-value=42 Score=33.06 Aligned_cols=74 Identities=12% Similarity=0.196 Sum_probs=47.6
Q ss_pred eeeeHHHHHHHHHH---C---CCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeEEeecCcc--cccee-cc-cc
Q 003958 493 SGFCIDVFTAAINL---L---PYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIITNRT--KMADF-TQ-PY 562 (784)
Q Consensus 493 ~G~~~dl~~~l~~~---l---~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~~~t~~r~--~~~~f-s~-p~ 562 (784)
..+..+++..+.++ . +.+ +++.. +....++..|.+|++|+++..-....+.. ..+.+ .. ++
T Consensus 32 ~~~lp~ll~~F~~~~~~~~~P~v~--v~l~~-------~~s~~l~~~l~~G~~Dl~i~~~~~~~~~l~~~~~~~~~~~~l 102 (294)
T 3cvg_A 32 SGLVKELADAFIKSKVDSGSAPFK--VAWYK-------SDTTVTINYLKDGIVDVGITYSPVAERISIKHGISESPSYYA 102 (294)
T ss_dssp HTHHHHHHHHHHHHHHSCC---CE--EEEEE-------CCHHHHHHHHHTTSCSEEEESCHHHHHHHHHTTSBCSSCEEE
T ss_pred HHHHHHHHHHHHhhhcccCCCCeE--EEEEe-------CCHHHHHHHHHcCCCcEEEEcCchhhhHHHhCCcccceeeeE
Confidence 34567888899888 7 666 44443 46778999999999999875422111110 01112 24 78
Q ss_pred ccccEEEEEeccC
Q 003958 563 IESGLVVVAPVRK 575 (784)
Q Consensus 563 ~~~~~~~~~~~~~ 575 (784)
....++++++...
T Consensus 103 ~~d~lvlv~~~~h 115 (294)
T 3cvg_A 103 FRDHFMLIGPPSN 115 (294)
T ss_dssp EEEEEEEEECTTC
T ss_pred EeccEEEEecCCC
Confidence 8889999987654
No 372
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=26.92 E-value=1.8e+02 Score=27.80 Aligned_cols=65 Identities=9% Similarity=-0.048 Sum_probs=44.8
Q ss_pred CcEEEEEEEc--CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccC
Q 003958 164 WREVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY 231 (784)
Q Consensus 164 w~~v~ii~~d--~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~ 231 (784)
-++|+++..+ +.|.....+.+++.+++.|..+..... ..+.......++.+.+.+.+.||+....
T Consensus 7 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgii~~~~~ 73 (289)
T 1dbq_A 7 TKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNA---WNNLEKQRAYLSMMAQKRVDGLLVMCSE 73 (289)
T ss_dssp -CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEcC---CCChHHHHHHHHHHHhCCCCEEEEEecc
Confidence 3578888854 556667788889999999987765321 1244445566777777889998887543
No 373
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=26.55 E-value=26 Score=33.71 Aligned_cols=114 Identities=13% Similarity=0.104 Sum_probs=61.4
Q ss_pred ccEEeccc-CCCCCCcCCCCceEeecCChHHHHHHHHHHHH-----HcCCcEEEEEEEcCCCcchhHHHHHHHHhccCcE
Q 003958 121 VPLLSFSA-TDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVD-----HYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCR 194 (784)
Q Consensus 121 ip~Is~~a-~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~-----~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~gi~ 194 (784)
++.+..|. |...|.+.+++-. .+++...+..+++.+. ...-++|.++..+. ..+.+.+.|++.|..
T Consensus 87 ~~i~aVG~~Ta~~L~~~G~~~~---~~~~~~~~e~L~~~l~~~~~~~~~~~~vL~~rg~~-----~r~~L~~~L~~~G~~ 158 (254)
T 4es6_A 87 QTWCSVGAATAAILEAYGLDVT---YPEQGDDSEALLALPAFQDSLRVHDPKVLIMRGEG-----GREFLAERLRGQGVQ 158 (254)
T ss_dssp CEEEESSHHHHHHHHHHTCCEE---CCSSCCSHHHHHTCHHHHHHTCSSSCEEEEEECSS-----CCCHHHHHHHHTTCE
T ss_pred CEEEEECHHHHHHHHHcCCCcc---cCCCCCCHHHHHHhHhhcccccCCCCEEEEEcCCc-----cHHHHHHHHHHCCCE
Confidence 55666553 2333444333221 2222333567777765 34567888877543 245677888889988
Q ss_pred EEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccCCcHHHHHHHHHH
Q 003958 195 ISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHYNRGPVVFHVAQY 243 (784)
Q Consensus 195 v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~~~~~~~~~~a~~ 243 (784)
|.....|.......+.....+.+.....++|+ +.++..+..+++.+.+
T Consensus 159 v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~v~-ftS~s~v~~~~~~~~~ 206 (254)
T 4es6_A 159 VDYLPLYRRRAPDYPAGELLARVRAERLNGLV-VSSGQGLQNLYQLAAA 206 (254)
T ss_dssp EEEEECEEEECCCCCTTHHHHHHHHTTCCEEE-CCSHHHHHHHHHHHGG
T ss_pred EEEEeEEEeeCCCCCHHHHHHHHHhCCCCEEE-EcCHHHHHHHHHHhhH
Confidence 76554443211111112223334445677655 5677777888776643
No 374
>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core, flanking helices, right handed beta-alpha-B crossover, transferase; 1.75A {Klebsiella pneumoniae} SCOP: c.38.1.1
Probab=26.44 E-value=82 Score=27.87 Aligned_cols=81 Identities=7% Similarity=0.022 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEEcCCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEec
Q 003958 150 YQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHT 229 (784)
Q Consensus 150 ~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~ 229 (784)
.+++.+..|.++++-++|.++- |..-.....+.+.+...-.|+++.. + +.++....+++-+..+.++++++-
T Consensus 13 IHGQV~t~W~k~~~~~~IiVvn-D~vA~D~~~k~~lk~a~P~gvk~~i---~----sve~ai~~~~~~~~~~~~v~ll~k 84 (164)
T 1nrz_A 13 IHGQVTTVWSKVANAQRIIICN-DDVFNDEVRRTLLRQAAPPGMKVNV---V----SLEKAVAVYHNPQYQDETVFYLFT 84 (164)
T ss_dssp SCHHHHHHHHHHHTCSEEEEEC-HHHHTCHHHHHHHHHTCCTTCEEEE---E----CHHHHHHHHTCGGGTTCEEEEEES
T ss_pred cchhheeeeccccCCCEEEEeC-ccccCCHHHHHHHHhcCCCCCeEEE---E----EHHHHHHHHhcccCCCceEEEEEC
Confidence 3578899999999999998885 3322334556666666666877654 2 233444555544446788999998
Q ss_pred cCCcHHHHH
Q 003958 230 HYNRGPVVF 238 (784)
Q Consensus 230 ~~~~~~~~~ 238 (784)
++.++..++
T Consensus 85 ~p~d~~~lv 93 (164)
T 1nrz_A 85 NPHDVLTMV 93 (164)
T ss_dssp SHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 887776654
No 375
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=25.94 E-value=2.8e+02 Score=23.16 Aligned_cols=57 Identities=7% Similarity=0.081 Sum_probs=35.9
Q ss_pred hhHHHHHHHHhccCc--EEEEeeccCCCCChhHHHHHHHHhh---------cCCceEEEEecc--CCcHHHHHHHHHHc
Q 003958 179 NGIAALGDTLAAKRC--RISFKAPLSVEATEDEITDLLVKVA---------LTESRIIVVHTH--YNRGPVVFHVAQYL 244 (784)
Q Consensus 179 ~~~~~l~~~l~~~gi--~v~~~~~~~~~~~~~d~~~~l~~l~---------~~~~~vIvl~~~--~~~~~~~~~~a~~~ 244 (784)
...+.+++.+++.|. .+.. .. +. ...+..++ ...+++|++... ..+...++++.++.
T Consensus 15 ~~~~~l~~~L~~~g~~~~v~~---~~---~~---~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr~~ 84 (152)
T 3heb_A 15 GHARLIEKNIRRAGVNNEIIA---FT---DG---TSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVKEN 84 (152)
T ss_dssp HHHHHHHHHHHHTTCCCCEEE---ES---SH---HHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCcceEEE---eC---CH---HHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHHhc
Confidence 356777888888876 3332 11 22 34444443 567999999744 45677888888874
No 376
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=25.58 E-value=2.3e+02 Score=24.61 Aligned_cols=83 Identities=17% Similarity=0.148 Sum_probs=43.1
Q ss_pred EEEEEEEcCCCc--chhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccC--CcHH--HHHH
Q 003958 166 EVIAIYVDDDHG--RNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY--NRGP--VVFH 239 (784)
Q Consensus 166 ~v~ii~~d~~~g--~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~--~~~~--~~~~ 239 (784)
++.|+|... +| +..++.+.+.+.+.|+.+.... +. ..+....+..+. +.|.|++.+.. .... .++.
T Consensus 2 kv~IvY~S~-tGnT~~~A~~ia~~l~~~g~~v~~~~-~~----~~~~~~~~~~~~--~~d~ii~Gspty~g~~p~~~fl~ 73 (161)
T 3hly_A 2 SVLIGYLSD-YGYSDRLSQAIGRGLVKTGVAVEMVD-LR----AVDPQELIEAVS--SARGIVLGTPPSQPSEAVATALS 73 (161)
T ss_dssp CEEEEECTT-STTHHHHHHHHHHHHHHTTCCEEEEE-TT----TCCHHHHHHHHH--HCSEEEEECCBSSCCHHHHHHHH
T ss_pred EEEEEEECC-ChHHHHHHHHHHHHHHhCCCeEEEEE-CC----CCCHHHHHHHHH--hCCEEEEEcCCcCCchhHHHHHH
Confidence 467888443 44 3557888888888887654322 22 122334444443 35566665432 3333 5666
Q ss_pred HHHHcCCCCCCeEEEec
Q 003958 240 VAQYLGMLGTGYVWIAT 256 (784)
Q Consensus 240 ~a~~~g~~~~~~~wi~~ 256 (784)
......+.+.....+++
T Consensus 74 ~l~~~~l~gk~v~~fgs 90 (161)
T 3hly_A 74 TIFAAAHNKQAIGLFDS 90 (161)
T ss_dssp HHHHHCCTTSEEEEECC
T ss_pred HHHhhhhCCCEEEEEEc
Confidence 65554444433333333
No 377
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=25.48 E-value=29 Score=34.90 Aligned_cols=64 Identities=8% Similarity=0.028 Sum_probs=17.9
Q ss_pred CchhhHHHHHHHHH-HHHHHhhhcccc-CCCceEEEEEEeecCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEE
Q 003958 1 MKLSGVMLLMIFYC-ELFVYRITAQAS-GRPSVVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQM 75 (784)
Q Consensus 1 M~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~i~IG~i~~~~~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~ 75 (784)
||++..+.++++++ ++++++|+.+.. ..+++|+|..-. .......+-.+++.++.. |+++++..
T Consensus 4 Mkk~~~~~~~~~~~~~~~lagC~~~~~~~~~~~l~v~~~~-------~~~~~~~~~~~~~f~~~~----gi~V~~~~ 69 (351)
T 4edp_A 4 MKKKILATLLTGLVLGTSLVGCGKTEGAEAGKKLVVSTWG-------LNEDVLKETVFEPFAKEH----GVEIVLDI 69 (351)
T ss_dssp --------------------------------CEEEEECC-------TTHHHHHHHTHHHHHHHH----TCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhheeCCCCccCCCCeEEEEEcc-------CcHHHHHHHHHHHHHHHH----CCEEEEEe
Confidence 77665544433322 234556654332 334567764321 112334445566666654 56677764
No 378
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=25.37 E-value=1.3e+02 Score=29.02 Aligned_cols=64 Identities=11% Similarity=0.128 Sum_probs=44.7
Q ss_pred CcEEEEEEEc-CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEecc
Q 003958 164 WREVIAIYVD-DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH 230 (784)
Q Consensus 164 w~~v~ii~~d-~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~ 230 (784)
-.+|+++..+ +.|.....+.+++.+++.|..+..... . .+.......++.+...+.+.||+...
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiI~~~~ 72 (288)
T 2qu7_A 8 SNIIAFIVPDQNPFFTEVLTEISHECQKHHLHVAVASS-E--ENEDKQQDLIETFVSQNVSAIILVPV 72 (288)
T ss_dssp EEEEEEEESSCCHHHHHHHHHHHHHHGGGTCEEEEEEC-T--TCHHHHHHHHHHHHHTTEEEEEECCS
T ss_pred CCEEEEEECCCCchHHHHHHHHHHHHHHCCCEEEEEeC-C--CCHHHHHHHHHHHHHcCccEEEEecC
Confidence 3578888864 456667788889999999988765321 1 23344456777777788999888754
No 379
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=24.94 E-value=5.1e+02 Score=25.62 Aligned_cols=132 Identities=11% Similarity=0.152 Sum_probs=70.7
Q ss_pred EEEEEeecCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEc-cCchhhHHH
Q 003958 33 NIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIG-PQDAVTSHV 111 (784)
Q Consensus 33 ~IG~i~~~~~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiG-p~~s~~~~~ 111 (784)
.++.+|...+ -..+..++.|+.++ +|..+.+...++.-.--+.+.-..+.++.-+++|+- ..... .
T Consensus 50 ~la~lF~e~S---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~iviR~~~~~---~ 116 (323)
T 3gd5_A 50 VLGLVFLKAS---TRTRVSFTVAMYQL-------GGQVIDLSPSNTQVGRGEPVRDTARVLGRYVDGLAIRTFAQT---E 116 (323)
T ss_dssp EEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEC----------CCHHHHHHHHTTTCSEEEEECSSHH---H
T ss_pred EEEEEecCCC---cchHhhHHHHHHHc-------CCeEEEeCcccccCCCCCCHHHHHHHHHHhCCEEEEecCChh---H
Confidence 5788887654 36678899999884 344455443343322223333444455555666553 22223 3
Q ss_pred HHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHH---HHcC---CcEEEEEEEcCCCcchhHHHHH
Q 003958 112 VSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV---DHYG---WREVIAIYVDDDHGRNGIAALG 185 (784)
Q Consensus 112 va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l---~~~~---w~~v~ii~~d~~~g~~~~~~l~ 185 (784)
+..+++..++|+|.-+. + ...| .+++++++ +++| ..+|+++.+ . ...+..+-
T Consensus 117 ~~~lA~~~~vPVINag~-~-----~~HP------------tQaLaDl~Ti~e~~g~l~glkva~vGD--~--~rva~Sl~ 174 (323)
T 3gd5_A 117 LEEYAHYAGIPVINALT-D-----HEHP------------CQVVADLLTIRENFGRLAGLKLAYVGD--G--NNVAHSLL 174 (323)
T ss_dssp HHHHHHHHCSCEEEEEC-S-----SCCH------------HHHHHHHHHHHHHHSCCTTCEEEEESC--C--CHHHHHHH
T ss_pred HHHHHHhCCCCEEeCCC-C-----CCCc------------HHHHHHHHHHHHHhCCCCCCEEEEECC--C--CcHHHHHH
Confidence 34556667899997432 1 1112 34666653 4544 567777652 2 45566666
Q ss_pred HHHhccCcEEEEee
Q 003958 186 DTLAAKRCRISFKA 199 (784)
Q Consensus 186 ~~l~~~gi~v~~~~ 199 (784)
..+...|+++....
T Consensus 175 ~~~~~~G~~v~~~~ 188 (323)
T 3gd5_A 175 LGCAKVGMSIAVAT 188 (323)
T ss_dssp HHHHHHTCEEEEEC
T ss_pred HHHHHcCCEEEEEC
Confidence 77777888776543
No 380
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=24.91 E-value=1.2e+02 Score=27.46 Aligned_cols=86 Identities=9% Similarity=0.088 Sum_probs=39.3
Q ss_pred CChHHHHHHHHHHHHHcCCcEEEEEEEcCCCc--chhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCce
Q 003958 146 QSDQYQMAAIAEIVDHYGWREVIAIYVDDDHG--RNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESR 223 (784)
Q Consensus 146 ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g--~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~ 223 (784)
|+.++-++.+.++.....-+++.|+|.. .+| +..++.+.+.+.+.|+.+... .+. +. ...+ ...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~kv~IvY~S-~tGnTe~~A~~ia~~l~~~g~~v~v~-~l~------~~---~~~l--~~~d 69 (191)
T 1bvy_F 3 PSTEQSAKKVRKKAENAHNTPLLVLYGS-NMGTAEGTARDLADIAMSKGFAPQVA-TLD------SH---AGNL--PREG 69 (191)
T ss_dssp ------------------CCCEEEEEEC-SSSHHHHHHHHHHHHHHTTTCCCEEE-EGG------GS---TTCC--CSSS
T ss_pred CchhhHHHHHhhcccccCCCeEEEEEEC-CChHHHHHHHHHHHHHHhCCCceEEe-eHH------Hh---hhhh--hhCC
Confidence 5555666666677766667889999954 344 356788888888777654431 121 11 1122 2345
Q ss_pred EEEEecc------CCcHHHHHHHHHHc
Q 003958 224 IIVVHTH------YNRGPVVFHVAQYL 244 (784)
Q Consensus 224 vIvl~~~------~~~~~~~~~~a~~~ 244 (784)
.||+.+. ++.+..|++.+...
T Consensus 70 ~vi~g~~Ty~G~~p~~~~~fl~~L~~~ 96 (191)
T 1bvy_F 70 AVLIVTASYNGHPPDNAKQFVDWLDQA 96 (191)
T ss_dssp EEEEEECCBTTBCCTTTHHHHHHHHTC
T ss_pred eEEEEEeecCCCcCHHHHHHHHHHHhc
Confidence 5665533 24677788777543
No 381
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=24.79 E-value=1.8e+02 Score=26.00 Aligned_cols=62 Identities=15% Similarity=0.092 Sum_probs=41.1
Q ss_pred EEEEEEEcCC-----CcchhHHHHHHHHh---ccCcEEEEeeccCCCCChhHHHHHHHHhhcC-CceEEEEecc
Q 003958 166 EVIAIYVDDD-----HGRNGIAALGDTLA---AKRCRISFKAPLSVEATEDEITDLLVKVALT-ESRIIVVHTH 230 (784)
Q Consensus 166 ~v~ii~~d~~-----~g~~~~~~l~~~l~---~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~-~~~vIvl~~~ 230 (784)
+++||...|+ .-......+.+.++ +.|+.+ ....++ .+...+...+++..+. ++|+||..+.
T Consensus 7 rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G~~v-~~~iv~--Dd~~~I~~~l~~~~~~~~~DlVittGG 77 (178)
T 2pbq_A 7 VIGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFEV-EYRVIP--DERDLIEKTLIELADEKGCSLILTTGG 77 (178)
T ss_dssp EEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSCCEE-EEEEEC--SCHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred EEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCCCEE-EEEEcC--CCHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 6777776443 11233456777666 889988 555666 4566777888877653 7899998743
No 382
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=24.69 E-value=1.7e+02 Score=22.77 Aligned_cols=58 Identities=9% Similarity=0.074 Sum_probs=36.2
Q ss_pred hhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccC--CcHHHHHHHHHHcC
Q 003958 179 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY--NRGPVVFHVAQYLG 245 (784)
Q Consensus 179 ~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~--~~~~~~~~~a~~~g 245 (784)
...+.+...++..|..+... . + ....+..+++..+++|++.... .....++++.++..
T Consensus 12 ~~~~~l~~~l~~~g~~v~~~---~---~---~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~ 71 (119)
T 2j48_A 12 EAATVVCEMLTAAGFKVIWL---V---D---GSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQ 71 (119)
T ss_dssp HHHHHHHHHHHHTTCEEEEE---S---C---HHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCcEEEEe---c---C---HHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcc
Confidence 35667777787778765432 1 2 2334444555678999887543 45667788887754
No 383
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=24.55 E-value=70 Score=32.08 Aligned_cols=61 Identities=15% Similarity=0.032 Sum_probs=43.5
Q ss_pred cCCCCChHhhhhCCCceEEeeCchHHHHHHhhcccCccCceeCCCHHHHHHHHhcCCcCCCeeEEEechhhh
Q 003958 681 SSPIKGIDSLRSSNYPIGYQVNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYA 752 (784)
Q Consensus 681 ~~~i~~~~dl~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~ 752 (784)
..+|++++||+ |++|.+..+......++ ..+..+ ..-...|.+.+|++ |-+|+.....+.+
T Consensus 147 ~~pI~s~~DLk--G~KiRv~~~~~~~~~~~-alGa~p----v~m~~~Evy~ALq~----G~VDg~~~p~~~~ 207 (327)
T 2hpg_A 147 NKPIRKPEDLN--GLRIRTPGAPAWQESIR-SLGAIP----VAVNFGEIYTAVQT----RAVDGAELTYANV 207 (327)
T ss_dssp SSCCSSGGGGT--TCEEECCSSHHHHHHHH-HHTSEE----ECCCGGGHHHHHHT----TSCSEEEECHHHH
T ss_pred CCCCCCHHHHC--CCEEEeCCCHHHHHHHH-HcCCEe----eecCHHHHHHHHHc----CCeeEEECCHHHH
Confidence 35899999999 99998875444455663 344321 12356789999999 8899998865554
No 384
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=24.32 E-value=4.5e+02 Score=24.71 Aligned_cols=115 Identities=11% Similarity=0.078 Sum_probs=63.7
Q ss_pred EEEEEeecC-CcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc---CceEEEccCchhh
Q 003958 33 NIGALLSFS-TNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEG---QTVAIIGPQDAVT 108 (784)
Q Consensus 33 ~IG~i~~~~-~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~---~v~aiiGp~~s~~ 108 (784)
+||++.... ......-..|+.-|+++. |.++. +.....+...+.+.+.+++.+ .+.+|+... ...
T Consensus 120 ~i~~i~~~~~~~~~~~R~~gf~~~l~~~--------g~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~-d~~ 188 (277)
T 3cs3_A 120 KVLLLSGPEKGYDSQERLAVSTRELTRF--------GIPYE--IIQGDFTEPSGYAAAKKILSQPQTEPVDVFAFN-DEM 188 (277)
T ss_dssp CEEEEECCTTSHHHHHHHHHHHHHHHHT--------TCCEE--EEECCSSHHHHHHHHHHHTTSCCCSSEEEEESS-HHH
T ss_pred eEEEEeCCccCccHHHHHHHHHHHHHHc--------CCCee--EEeCCCChhHHHHHHHHHHhcCCCCCcEEEEcC-hHH
Confidence 467766543 222334567788787763 22333 333445677777788888865 688998743 444
Q ss_pred HHHHHHhhhcCC--cc----EEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHH
Q 003958 109 SHVVSHVANELQ--VP----LLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVD 160 (784)
Q Consensus 109 ~~~va~~~~~~~--ip----~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~ 160 (784)
+..+...+...+ +| ++++.... +.....|.+.....+...++...+++|.
T Consensus 189 a~g~~~al~~~g~~vP~di~vvg~d~~~--~~~~~~p~lttv~~~~~~~g~~a~~~l~ 244 (277)
T 3cs3_A 189 AIGVYKYVAETNYQMGKDIRIIGFDNSE--LGAFVQPRLATIAYSKHRWGMVAAEKII 244 (277)
T ss_dssp HHHHHHHHTTSSCCBTTTEEEECSSCCH--HHHHSSSCCBEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCcEEEEEeCCcH--HHhccCCceeEEecCHHHHHHHHHHHHH
Confidence 555555565554 34 45443221 1111124444455566667777777653
No 385
>3bvp_A INT, TP901-1 integrase; DNA recombinase, recombination; 2.10A {Lactococcus phage tp901-1}
Probab=24.31 E-value=1.6e+02 Score=24.78 Aligned_cols=23 Identities=13% Similarity=0.317 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEE
Q 003958 149 QYQMAAIAEIVDHYGWREVIAIY 171 (784)
Q Consensus 149 ~~~~~ai~~~l~~~~w~~v~ii~ 171 (784)
+.|-..+-++.+..||.-+.++.
T Consensus 24 ~~Q~~~l~~~a~~~g~~~~~~~~ 46 (138)
T 3bvp_A 24 DEQIDRLTKYAEAMGWQVSDTYT 46 (138)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEEE
Confidence 45666677777777777555443
No 386
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=24.25 E-value=1.9e+02 Score=27.60 Aligned_cols=85 Identities=8% Similarity=-0.004 Sum_probs=58.7
Q ss_pred HHHHHHHcCCcEEEEEEEcCCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEecc---C
Q 003958 155 IAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH---Y 231 (784)
Q Consensus 155 i~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~---~ 231 (784)
++++.+ -|-.-+++++ |..|..+..+.++..-+.-++.|-....+- + . -|+-+.+..++|.|++.+. .
T Consensus 69 iA~~~~-~GA~aiSVLT-d~~~F~Gs~~~L~~vr~~v~lPvLrKDFii---d--~--yQI~eAr~~GADaILLI~a~L~~ 139 (258)
T 4a29_A 69 YAKFME-RYAVGLSITT-EEKYFNGSYETLRKIASSVSIPILMSDFIV---K--E--SQIDDAYNLGADTVLLIVKILTE 139 (258)
T ss_dssp HHHHHT-TTCSEEEEEC-CSTTTCCCHHHHHHHHTTCSSCEEEESCCC---S--H--HHHHHHHHHTCSEEEEEGGGSCH
T ss_pred HHHHHh-CCCeEEEEeC-CCCCCCCCHHHHHHHHHhcCCCEeeccccc---c--H--HHHHHHHHcCCCeeehHHhhcCH
Confidence 445444 4777788887 555777777778776666677776544332 1 1 3566677789999998744 3
Q ss_pred CcHHHHHHHHHHcCCCC
Q 003958 232 NRGPVVFHVAQYLGMLG 248 (784)
Q Consensus 232 ~~~~~~~~~a~~~g~~~ 248 (784)
.++..+...|.++||..
T Consensus 140 ~~l~~l~~~A~~lGl~~ 156 (258)
T 4a29_A 140 RELESLLEYARSYGMEP 156 (258)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhHHH
Confidence 56889999999999864
No 387
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=24.16 E-value=5.5e+02 Score=25.64 Aligned_cols=132 Identities=13% Similarity=0.154 Sum_probs=69.6
Q ss_pred EEEEEeecCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEc-cCchhhHHH
Q 003958 33 NIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIG-PQDAVTSHV 111 (784)
Q Consensus 33 ~IG~i~~~~~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiG-p~~s~~~~~ 111 (784)
.++.+|...+ -..+..++.|+.++ +|..+.+...++.-.--+.+.-..+.++.-+.+|+- .... ..
T Consensus 72 ~la~lF~epS---TRTR~SFE~A~~~L-------Gg~vi~l~~~~ss~~kgEsl~DTarvLs~y~D~IviR~~~~---~~ 138 (340)
T 4ep1_A 72 ILGLIFDKHS---TRTRVSFEAGMVQL-------GGHGMFLNGKEMQMGRGETVSDTAKVLSHYIDGIMIRTFSH---AD 138 (340)
T ss_dssp EEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEEESCC------CCTTHHHHHHHHHCSEEEEECSCH---HH
T ss_pred eEEEEecCCC---ccHHHHHHHHHHHc-------CCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCCh---hH
Confidence 4778886654 35678899998884 345454443333221111122222333332444432 2222 23
Q ss_pred HHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHH---HHcC---CcEEEEEEEcCCCcchhHHHHH
Q 003958 112 VSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV---DHYG---WREVIAIYVDDDHGRNGIAALG 185 (784)
Q Consensus 112 va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l---~~~~---w~~v~ii~~d~~~g~~~~~~l~ 185 (784)
+..+++..++|+|.-+ +. ...| .+++++++ +++| ..+|+++. |. ...+..+-
T Consensus 139 ~~~lA~~~~vPVINag--~~----~~HP------------tQaLaDl~TI~E~~G~l~glkva~vG--D~--~nva~Sl~ 196 (340)
T 4ep1_A 139 VEELAKESSIPVINGL--TD----DHHP------------CQALADLMTIYEETNTFKGIKLAYVG--DG--NNVCHSLL 196 (340)
T ss_dssp HHHHHHHCSSCEEEEE--CS----SCCH------------HHHHHHHHHHHHHHSCCTTCEEEEES--CC--CHHHHHHH
T ss_pred HHHHHHhCCCCEEeCC--CC----CCCc------------HHHHHHHHHHHHHhCCCCCCEEEEEC--CC--chhHHHHH
Confidence 4456677789999732 21 1112 34666653 4554 46777774 22 44677777
Q ss_pred HHHhccCcEEEEee
Q 003958 186 DTLAAKRCRISFKA 199 (784)
Q Consensus 186 ~~l~~~gi~v~~~~ 199 (784)
..+...|.++....
T Consensus 197 ~~~~~~G~~v~~~~ 210 (340)
T 4ep1_A 197 LASAKVGMHMTVAT 210 (340)
T ss_dssp HHHHHHTCEEEEEC
T ss_pred HHHHHcCCEEEEEC
Confidence 77777888776543
No 388
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=23.85 E-value=2.6e+02 Score=23.42 Aligned_cols=58 Identities=17% Similarity=0.184 Sum_probs=37.7
Q ss_pred hhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEecc--CCcHHHHHHHHHHcC
Q 003958 179 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH--YNRGPVVFHVAQYLG 245 (784)
Q Consensus 179 ~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~--~~~~~~~~~~a~~~g 245 (784)
...+.++..+++.|..+.. .. + ....+..+++..+++|++... ..+...++++.++..
T Consensus 25 ~~~~~l~~~L~~~g~~v~~---~~---~---~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 84 (153)
T 3hv2_A 25 VILQRLQQLLSPLPYTLHF---AR---D---ATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQY 84 (153)
T ss_dssp HHHHHHHHHHTTSSCEEEE---ES---S---HHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcccCcEEEE---EC---C---HHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHC
Confidence 3567778888888866542 21 2 334555566678999998744 345677888877744
No 389
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=23.81 E-value=1.8e+02 Score=23.46 Aligned_cols=68 Identities=9% Similarity=0.104 Sum_probs=40.8
Q ss_pred cEEEEEEEcCCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEecc--CCcHHHHHHHHH
Q 003958 165 REVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH--YNRGPVVFHVAQ 242 (784)
Q Consensus 165 ~~v~ii~~d~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~--~~~~~~~~~~a~ 242 (784)
.+|.++- |+. ...+.++..+++.|..+.. .. +....+..+++..+++|++... ..+...++++.+
T Consensus 8 ~~ilivd-d~~---~~~~~l~~~L~~~g~~v~~---~~------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~ 74 (130)
T 3eod_A 8 KQILIVE-DEQ---VFRSLLDSWFSSLGATTVL---AA------DGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIR 74 (130)
T ss_dssp CEEEEEC-SCH---HHHHHHHHHHHHTTCEEEE---ES------CHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHH
T ss_pred CeEEEEe-CCH---HHHHHHHHHHHhCCceEEE---eC------CHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHH
Confidence 4555443 332 3466777778887876543 11 2345566677778999998754 344667787777
Q ss_pred HcC
Q 003958 243 YLG 245 (784)
Q Consensus 243 ~~g 245 (784)
+.+
T Consensus 75 ~~~ 77 (130)
T 3eod_A 75 NRG 77 (130)
T ss_dssp HTT
T ss_pred hcC
Confidence 754
No 390
>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A
Probab=23.76 E-value=78 Score=28.07 Aligned_cols=81 Identities=7% Similarity=0.053 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEEcCCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEec
Q 003958 150 YQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHT 229 (784)
Q Consensus 150 ~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~ 229 (784)
.+++.+..|.++++-++|.++- |..-.....+.+.+.+.-.|+.+.. + +.++....+++-+..+.++++++-
T Consensus 16 IHGQV~t~W~~~~~~~~IiVvn-D~vA~D~~~k~~lk~a~P~gvk~~i---~----sve~ai~~~~~~~~~~~~v~ll~k 87 (165)
T 1vsq_C 16 IHGQVATRWTKETNVSRIIVVS-DEVAADTVRKTLLTQVAPPGVTAHV---V----DVAKMIRVYNNPKYAGERVMLLFT 87 (165)
T ss_dssp SCTTHHHHHHHHTTCSEEEEEC-HHHHTCHHHHHHHHHTCCTTCEEEE---E----CHHHHHHHHTCGGGTTCEEEEEES
T ss_pred cchheeeeeccccCCCEEEEeC-ccccCCHHHHHHHHhcCCCCCeEEE---E----EHHHHHHHHhccccCCcEEEEEEC
Confidence 3577889999999999998885 3322334556666666666877654 2 233444455444446788999998
Q ss_pred cCCcHHHHH
Q 003958 230 HYNRGPVVF 238 (784)
Q Consensus 230 ~~~~~~~~~ 238 (784)
++.++..++
T Consensus 88 ~p~d~~~lv 96 (165)
T 1vsq_C 88 NPTDVERLV 96 (165)
T ss_dssp SHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 888776664
No 391
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=23.64 E-value=4.9e+02 Score=24.87 Aligned_cols=112 Identities=15% Similarity=0.094 Sum_probs=60.9
Q ss_pred EEEEEEeecCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEccCchhhH--
Q 003958 32 VNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIGPQDAVTS-- 109 (784)
Q Consensus 32 i~IG~i~~~~~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~s~~~-- 109 (784)
=+||++...+...+.....+++-|+++. |.++......+ .....+++.++. +++.+|+.+.+....
T Consensus 134 ~~I~~i~~~~~~~~~~r~~g~~~al~~~--------gi~~~~~~~~~---~~~~~~~~~~l~-~~~dai~~~~D~~a~g~ 201 (295)
T 3lft_A 134 KTIGALYSSSEDNSKTQVEEFKAYAEKA--------GLTVETFAVPS---TNEIASTVTVMT-SKVDAIWVPIDNTIASG 201 (295)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHT--------TCEEEEEEESS---GGGHHHHHHHHT-TTCSEEEECSCHHHHHT
T ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHc--------CCEEEEEecCC---HHHHHHHHHHHH-hcCCEEEECCchhHHHH
Confidence 3677776654322344456777777652 34444333222 223344455554 478888876554332
Q ss_pred -HHHHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHHH
Q 003958 110 -HVVSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVD 160 (784)
Q Consensus 110 -~~va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l~ 160 (784)
.++...+...++|++++.... +. .+-+.....+...+++..++++.
T Consensus 202 ~~~l~~~~~~~~i~vig~d~~~--~~---~~~Lttv~~~~~~~G~~Aa~~l~ 248 (295)
T 3lft_A 202 FPTVVSSNQSSKKPIYPSATAM--VE---VGGLASVVIDQHDLGVATGKMIV 248 (295)
T ss_dssp HHHHHHHTTTTCCCEEESSHHH--HT---TTCCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEeCCHHH--Hh---cCcEEEEecCHHHHHHHHHHHHH
Confidence 223344456789999874321 11 13445555667777877777653
No 392
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=23.45 E-value=1.3e+02 Score=27.92 Aligned_cols=40 Identities=10% Similarity=-0.055 Sum_probs=27.6
Q ss_pred HHHHHHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeE
Q 003958 497 IDVFTAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDI 546 (784)
Q Consensus 497 ~dl~~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~ 546 (784)
-++++.+.++.|.++++.. +.-..++..+. +.+|+.++.-
T Consensus 16 ~~~~~~F~~~~gi~V~~~~---------~~s~~l~~~l~-~~~Dv~~~~~ 55 (237)
T 2hxw_A 16 KDIANKYSEKTGVKVNVNF---------GPQATWFEKAK-KDADILFGAS 55 (237)
T ss_dssp HHHHHHHHHHHCCCEEEEE---------SSHHHHHHHHH-HHCSEEEESS
T ss_pred HHHHHHHHHHhCceEEEEe---------CChHHHHHHhc-cCCCEEEeCC
Confidence 3567777777788755533 34557777777 8999987654
No 393
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=23.44 E-value=72 Score=31.76 Aligned_cols=61 Identities=13% Similarity=0.088 Sum_probs=43.5
Q ss_pred cCCCCChHhhhhCCCceEEeeCchHHHHHHhhcccCccCceeCCCHHHHHHHHhcCCcCCCeeEEEechhhh
Q 003958 681 SSPIKGIDSLRSSNYPIGYQVNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYA 752 (784)
Q Consensus 681 ~~~i~~~~dl~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~ 752 (784)
..||++++||+ |++|.+..+......++ ..+..+ + .-...|.+.+|++ |-+|+.....+.+
T Consensus 129 ~~pI~s~~Dlk--G~KiR~~~~~~~~~~~~-~lGa~p---v-~m~~~Evy~ALq~----G~VDg~~~~~~~~ 189 (316)
T 2vpn_A 129 DEPITSPEDFD--NKKIRTMTNPLLAETYK-AFGATP---T-PLPWGEVYGGLQT----GIIDGQENPIFWI 189 (316)
T ss_dssp SSCCCSGGGGT--TCEEEECSCHHHHHHHH-HHTCEE---E-ECCGGGHHHHHHH----TSCSEEEEEHHHH
T ss_pred CCCCCChHHhC--CCEEEeCCCHHHHHHHH-HcCCee---e-ecCHHHHHHHHHc----CCcceeeCCHHHH
Confidence 45899999999 99999876555556664 344321 1 2356789999999 7899988765443
No 394
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=23.32 E-value=1.9e+02 Score=23.53 Aligned_cols=57 Identities=7% Similarity=-0.029 Sum_probs=35.7
Q ss_pred hHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCC-ceEEEEecc--CCcHHHHHHHHHHcC
Q 003958 180 GIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTE-SRIIVVHTH--YNRGPVVFHVAQYLG 245 (784)
Q Consensus 180 ~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~-~~vIvl~~~--~~~~~~~~~~a~~~g 245 (784)
..+.++..+++.|..+... . + ....+..+.+.. +++|++... ..+...++++.++.+
T Consensus 19 ~~~~l~~~L~~~g~~v~~~---~---~---~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 78 (136)
T 3hdv_A 19 NREALILYLKSRGIDAVGA---D---G---AEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASE 78 (136)
T ss_dssp HHHHHHHHHHHTTCCEEEE---S---S---HHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTST
T ss_pred HHHHHHHHHHHcCceEEEe---C---C---HHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcC
Confidence 5667777777778765432 1 2 234444555455 899888744 455677888887753
No 395
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=23.23 E-value=76 Score=31.54 Aligned_cols=61 Identities=13% Similarity=0.075 Sum_probs=43.8
Q ss_pred cCCCCChHhhhhCCCceEEeeCchHHHHHHhhcccCccCceeCCCHHHHHHHHhcCCcCCCeeEEEechhhh
Q 003958 681 SSPIKGIDSLRSSNYPIGYQVNSFARNYLVDELNIDESRLVPLNSPEEYAKALKDGPHKGGVAAVVDDRAYA 752 (784)
Q Consensus 681 ~~~i~~~~dl~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~ 752 (784)
..+|++++||+ |++|.+..+......++ ..+..+ ..-...|.+.+|++ |-+|+.....+.+
T Consensus 132 ~~pI~s~~Dlk--GlKiRv~~~~~~~~~~~-alGa~p----v~m~~~Evy~ALq~----G~vDg~~~~~~~~ 192 (312)
T 2xwv_A 132 NRAINSIADMK--GLKLRVPNAATNLAYAK-YVGASP----TPMAFSEVYLALQT----NAVDGQENPLAAV 192 (312)
T ss_dssp SSCCCSGGGGT--TCEEEECSCHHHHHHHH-HHTCEE----EECCGGGHHHHHHT----TSSSEEEEEHHHH
T ss_pred CCCcCCHHHhC--CCEEEeCCCHHHHHHHH-HcCCee----eecCHHHHHHHHHc----CCcceEeccHHHH
Confidence 35899999999 99998876443445663 344321 12356789999999 8899998876665
No 396
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=22.82 E-value=1.6e+02 Score=27.65 Aligned_cols=63 Identities=6% Similarity=-0.014 Sum_probs=43.7
Q ss_pred cEEEEEEEc--CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEecc
Q 003958 165 REVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH 230 (784)
Q Consensus 165 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~ 230 (784)
+.|+++..+ +.|.....+.+++.+++.|..+..... . .+.......++.+...+.+.||+...
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiI~~~~ 67 (255)
T 1byk_A 3 KVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMES-Q--FSPQLVAEHLGVLKRRNIDGVVLFGF 67 (255)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHHTCEEEEEEC-T--TCHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHcCCEEEEEeC-C--CcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 468888754 456667788889999999987765421 1 23344456777787788998888753
No 397
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=22.80 E-value=3e+02 Score=22.36 Aligned_cols=57 Identities=11% Similarity=-0.015 Sum_probs=35.8
Q ss_pred hhHHHHHHHHhc-cCcE-EEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccC--CcHHHHHHHHHHc
Q 003958 179 NGIAALGDTLAA-KRCR-ISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY--NRGPVVFHVAQYL 244 (784)
Q Consensus 179 ~~~~~l~~~l~~-~gi~-v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~--~~~~~~~~~a~~~ 244 (784)
...+.++..+++ .|.. +.. .. + ....+..+++..+++|++.... .+...++++.++.
T Consensus 19 ~~~~~l~~~L~~~~~~~~v~~---~~---~---~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~ 79 (143)
T 3cnb_A 19 EFADMLTQFLENLFPYAKIKI---AY---N---PFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKST 79 (143)
T ss_dssp HHHHHHHHHHHHHCTTCEEEE---EC---S---HHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhccCccEEEE---EC---C---HHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhC
Confidence 356677777777 7776 332 11 2 2345555666778999988543 4566778887763
No 398
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=22.79 E-value=2.2e+02 Score=28.17 Aligned_cols=69 Identities=9% Similarity=-0.066 Sum_probs=47.4
Q ss_pred HHcCCcEEEEEEEc--CCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccC
Q 003958 160 DHYGWREVIAIYVD--DDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY 231 (784)
Q Consensus 160 ~~~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~ 231 (784)
+.-.-+.|+++..+ +.|.....+.+++.+++.|..+..... ..+.......++.+...+.+.||+....
T Consensus 54 ~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 124 (340)
T 1qpz_A 54 KVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNA---WNNLEKQRAYLSMMAQKRVDGLLVMCSE 124 (340)
T ss_dssp HHTCCSEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred ccCCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEeC---CCCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 33344689999864 456677788899999999988765321 1234445566777777889999887543
No 399
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=22.79 E-value=4.5e+02 Score=24.16 Aligned_cols=87 Identities=10% Similarity=0.056 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHcCC-cEEEEEEEcCCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHH-HHHHHHhhcCCceEEEEe
Q 003958 151 QMAAIAEIVDHYGW-REVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEI-TDLLVKVALTESRIIVVH 228 (784)
Q Consensus 151 ~~~ai~~~l~~~~w-~~v~ii~~d~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~-~~~l~~l~~~~~~vIvl~ 228 (784)
-.+++.+-.+.-.. -.|..|.+|... ....+.+++.|+.+.....-.. .+..++ ...++.+++.++|+||+.
T Consensus 15 nl~ali~~~~~~~l~~eI~~Visn~~~-----a~v~~~A~~~gIp~~~~~~~~~-~~r~~~d~~~~~~l~~~~~Dliv~a 88 (211)
T 3p9x_A 15 NAEAIIQSQKAGQLPCEVALLITDKPG-----AKVVERVKVHEIPVCALDPKTY-PSKEAYEIEVVQQLKEKQIDFVVLA 88 (211)
T ss_dssp HHHHHHHHHHTTCCSSEEEEEEESCSS-----SHHHHHHHTTTCCEEECCGGGS-SSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHcCCCCcEEEEEEECCCC-----cHHHHHHHHcCCCEEEeChhhc-CchhhhHHHHHHHHHhcCCCEEEEe
Confidence 35566666554333 367777776532 1355677788988754322111 133333 345677788899999999
Q ss_pred ccCCcHHHHHHHHHH
Q 003958 229 THYNRGPVVFHVAQY 243 (784)
Q Consensus 229 ~~~~~~~~~~~~a~~ 243 (784)
+....+..-+.+..+
T Consensus 89 gy~~Il~~~~l~~~~ 103 (211)
T 3p9x_A 89 GYMRLVGPTLLGAYE 103 (211)
T ss_dssp SCCSCCCHHHHHHHT
T ss_pred CchhhcCHHHHhhcc
Confidence 887776654444444
No 400
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=22.69 E-value=1.2e+02 Score=31.15 Aligned_cols=95 Identities=9% Similarity=0.009 Sum_probs=57.8
Q ss_pred CceEeecCChHHHHHHHHHHHHHcCC---cEEEEEEEcCCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHH
Q 003958 139 PYFVRTTQSDQYQMAAIAEIVDHYGW---REVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLV 215 (784)
Q Consensus 139 p~~~r~~ps~~~~~~ai~~~l~~~~w---~~v~ii~~d~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~ 215 (784)
|.-+...+... ..+.++++.++. +++.+|++...... .+.+.+++.|+.+.....+..+...+.....++
T Consensus 28 p~~i~~G~g~l---~~l~~~l~~~g~~~~~~~liVtd~~~~~~----~l~~~L~~~g~~~~~f~~v~~~pt~~~v~~~~~ 100 (375)
T 3rf7_A 28 VPKMIFGRGSF---VQLDTVLEQERTDANDFVVFLVDDVHQHK----PLAARVPNKAHDLVIYVNVDDEPTTVQVDELTA 100 (375)
T ss_dssp CSCEEESTTGG---GGHHHHHHTTCCSTTCCEEEEEEGGGTTS----HHHHHSCCCTTSEEEEECCSSCCBHHHHHHHHH
T ss_pred CCeEEEcCCHH---HHHHHHHHHhcccCCCeEEEEECchhhhh----HHHHHHHhcCCeEEEEeCCCCCCCHHHHHHHHH
Confidence 44344444433 246677777763 77888885443221 366777777877654444555556677777787
Q ss_pred HhhcCC---ceEEEEeccC--CcHHHHHHH
Q 003958 216 KVALTE---SRIIVVHTHY--NRGPVVFHV 240 (784)
Q Consensus 216 ~l~~~~---~~vIvl~~~~--~~~~~~~~~ 240 (784)
.+++.+ +|+||-.+.+ -++..++..
T Consensus 101 ~~~~~~~~~~D~IIavGGGS~iD~AK~iA~ 130 (375)
T 3rf7_A 101 QVKAFNTKLPVSVVGLGGGSTMDLAKAVSL 130 (375)
T ss_dssp HHHHHCSSCCSEEEEEESHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCEEEEeCCcHHHHHHHHHHH
Confidence 777766 9999877543 344444433
No 401
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=22.62 E-value=1.7e+02 Score=24.26 Aligned_cols=55 Identities=15% Similarity=0.132 Sum_probs=34.7
Q ss_pred hHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEecc--CCcHHHHHHHHHH
Q 003958 180 GIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH--YNRGPVVFHVAQY 243 (784)
Q Consensus 180 ~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~--~~~~~~~~~~a~~ 243 (784)
..+.++..+++.|..|.. .. + ....+..+++..+++|++... ..+...++++.++
T Consensus 20 ~~~~l~~~L~~~g~~v~~---~~---~---~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~ 76 (147)
T 2zay_A 20 ALAASISALSQEGFDIIQ---CG---N---AIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKK 76 (147)
T ss_dssp GGHHHHHHHHHHTEEEEE---ES---S---HHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCeEEE---eC---C---HHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHc
Confidence 456666777777776542 21 2 234455555567999999854 3456778888776
No 402
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=22.54 E-value=3.8e+02 Score=27.44 Aligned_cols=76 Identities=13% Similarity=0.155 Sum_probs=41.4
Q ss_pred CCcEEEEEEEcCCCc--chhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccC------CcH
Q 003958 163 GWREVIAIYVDDDHG--RNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY------NRG 234 (784)
Q Consensus 163 ~w~~v~ii~~d~~~g--~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~------~~~ 234 (784)
.++++.++|... +| +..++.+.+.+.+.|.++.... +. ..+......++. .+|.|++.+.. ..+
T Consensus 255 ~~~kv~iiy~S~-~GnT~~la~~i~~~l~~~g~~v~~~~-l~----~~~~~~~~~~l~--~~D~iiigsP~y~~~~~~~~ 326 (414)
T 2q9u_A 255 CQKKVTVVLDSM-YGTTHRMALALLDGARSTGCETVLLE-MT----SSDITKVALHTY--DSGAVAFASPTLNNTMMPSV 326 (414)
T ss_dssp CCSEEEEEECCS-SSHHHHHHHHHHHHHHHTTCEEEEEE-GG----GCCHHHHHHHHH--TCSEEEEECCCBTTBCCHHH
T ss_pred cCCeEEEEEECC-CchHHHHHHHHHHHHHhCCCeEEEEE-cC----cCCHHHHHHHHH--hCCEEEEEcCccCcCchHHH
Confidence 367888888543 34 3446777777777776654332 21 112334444444 46777776442 345
Q ss_pred HHHHHHHHHcCC
Q 003958 235 PVVFHVAQYLGM 246 (784)
Q Consensus 235 ~~~~~~a~~~g~ 246 (784)
..++.......+
T Consensus 327 k~fld~l~~~~~ 338 (414)
T 2q9u_A 327 AAALNYVRGLTL 338 (414)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHhhcc
Confidence 566666554333
No 403
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=22.33 E-value=49 Score=33.88 Aligned_cols=80 Identities=10% Similarity=0.009 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCCcEEEEEEEcCCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEeccC-
Q 003958 153 AAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTHY- 231 (784)
Q Consensus 153 ~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~~- 231 (784)
+.+.++++.+|.+++.||++....+ ..+.+.+.++ . .+.+. .+.++...+.....++.+++.++|+||-.+.+
T Consensus 26 ~~l~~~l~~~g~~rvliVtd~~~~~--~~~~v~~~L~--~-~~~f~-~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 99 (364)
T 3iv7_A 26 AFLKQEVERRGSAKVMVIAGEREMS--IAHKVASEIE--V-AIWHD-EVVMHVPIEVAERARAVATDNEIDLLVCVGGGS 99 (364)
T ss_dssp HHHHHHHHHHTCSSEEEECCGGGHH--HHHHHTTTSC--C-SEEEC-CCCTTCBHHHHHHHHHHHHHTTCCEEEEEESHH
T ss_pred HHHHHHHHHcCCCEEEEEECCCHHH--HHHHHHHHcC--C-CEEEc-ceecCCCHHHHHHHHHHHHhcCCCEEEEeCCcH
Confidence 4567888899999999998655332 3344444443 1 12222 23333456778888888888999998877543
Q ss_pred -CcHHHHH
Q 003958 232 -NRGPVVF 238 (784)
Q Consensus 232 -~~~~~~~ 238 (784)
-++..++
T Consensus 100 ~iD~aK~i 107 (364)
T 3iv7_A 100 TIGLAKAI 107 (364)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 3344444
No 404
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=22.26 E-value=3.9e+02 Score=23.30 Aligned_cols=75 Identities=16% Similarity=0.149 Sum_probs=46.2
Q ss_pred cEEEEEEEcCCC--c---chhHHHHHHHHhcc-----CcEEEEeeccCCCCChhHHHHHHHHhhc-CCceEEEEeccC--
Q 003958 165 REVIAIYVDDDH--G---RNGIAALGDTLAAK-----RCRISFKAPLSVEATEDEITDLLVKVAL-TESRIIVVHTHY-- 231 (784)
Q Consensus 165 ~~v~ii~~d~~~--g---~~~~~~l~~~l~~~-----gi~v~~~~~~~~~~~~~d~~~~l~~l~~-~~~~vIvl~~~~-- 231 (784)
-+++||...|+- | ......+.+.+++. |..+.....++ .+...+...+++..+ .++|+||..+..
T Consensus 6 ~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~--Dd~~~i~~~l~~~~~~~~~DlVittGG~g~ 83 (167)
T 1uuy_A 6 YKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVP--DEVERIKDILQKWSDVDEMDLILTLGGTGF 83 (167)
T ss_dssp EEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEEC--SCHHHHHHHHHHHHHTSCCSEEEEESCCSS
T ss_pred cEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcC--CCHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 467777754431 1 11233455666666 88888776676 456677788887654 578999987443
Q ss_pred ---CcHHHHHHHH
Q 003958 232 ---NRGPVVFHVA 241 (784)
Q Consensus 232 ---~~~~~~~~~a 241 (784)
+.....+.++
T Consensus 84 g~~D~t~~a~~~~ 96 (167)
T 1uuy_A 84 TPRDVTPEATKKV 96 (167)
T ss_dssp STTCCHHHHHHHH
T ss_pred CCCCchHHHHHHH
Confidence 3445555444
No 405
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=22.18 E-value=2e+02 Score=27.16 Aligned_cols=35 Identities=9% Similarity=0.146 Sum_probs=26.1
Q ss_pred HHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEE
Q 003958 501 TAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAV 543 (784)
Q Consensus 501 ~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~ 543 (784)
+...+.-|.+ ++++.+ ..+......|.+|++|+..
T Consensus 22 ~~~~~~~Gl~--ve~~~f------~d~~~~n~AL~~G~iD~n~ 56 (241)
T 1xs5_A 22 KEEVKKQHIE--LRIVEF------TNYVALNEAVMRGDILMNF 56 (241)
T ss_dssp HHHHHTTTEE--EEEEEC------SCHHHHHHHHHHTSSSEEE
T ss_pred HHHHHHcCCe--EEEEEc------CChHHHHHHHHcCCCCEec
Confidence 3344455766 666666 4688999999999999964
No 406
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=22.16 E-value=1.2e+02 Score=31.25 Aligned_cols=95 Identities=9% Similarity=0.023 Sum_probs=58.8
Q ss_pred HHHHcCCcEEEEEEEcCCCcchhHHHHHHHHhccCcEEEEeeccCC---CCChhHHHHHHHHhhcCCc---eEEEEeccC
Q 003958 158 IVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSV---EATEDEITDLLVKVALTES---RIIVVHTHY 231 (784)
Q Consensus 158 ~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~---~~~~~d~~~~l~~l~~~~~---~vIvl~~~~ 231 (784)
+++..+.+++.||++...+. ...+.+.+.+++.|+.+.... ++. ..+.......++.+++.+. ++||..+.+
T Consensus 56 ~l~~~~~~rvlIVtd~~v~~-~~~~~v~~~L~~~g~~~~~~~-~~~gE~~kt~~~v~~~~~~l~~~~~~R~d~IIAvGGG 133 (390)
T 3okf_A 56 LLSLSAKQKVVIVTNHTVAP-LYAPAIISLLDHIGCQHALLE-LPDGEQYKTLETFNTVMSFLLEHNYSRDVVVIALGGG 133 (390)
T ss_dssp GGCCCTTCEEEEEEETTTHH-HHHHHHHHHHHHHTCEEEEEE-ECSSGGGCBHHHHHHHHHHHHHTTCCTTCEEEEEESH
T ss_pred HHHhcCCCEEEEEECCcHHH-HHHHHHHHHHHHcCCeEEEEE-ECCCcCCchHHHHHHHHHHHHhcCCCcCcEEEEECCc
Confidence 44555779999999766543 377888999998888765322 221 1245567777777777655 677766443
Q ss_pred --CcHHHHHHHHHHcCCCCCCeEEEecC
Q 003958 232 --NRGPVVFHVAQYLGMLGTGYVWIATS 257 (784)
Q Consensus 232 --~~~~~~~~~a~~~g~~~~~~~wi~~~ 257 (784)
-++..++......| ..++-|-|.
T Consensus 134 sv~D~ak~~Aa~~~rg---ip~I~IPTT 158 (390)
T 3okf_A 134 VIGDLVGFAAACYQRG---VDFIQIPTT 158 (390)
T ss_dssp HHHHHHHHHHHHBTTC---CEEEEEECS
T ss_pred HHhhHHHHHHHHhcCC---CCEEEeCCC
Confidence 45555554444444 344445554
No 407
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=22.03 E-value=2.7e+02 Score=21.33 Aligned_cols=65 Identities=15% Similarity=0.255 Sum_probs=47.4
Q ss_pred ecCChHHHHHHHHHHHHHcCCcEEEEEEEcCCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHh
Q 003958 144 TTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKV 217 (784)
Q Consensus 144 ~~ps~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l 217 (784)
.+-.+...+.....+.+..|-+-..|||..| +...+.+.....+.|.++-... ...|+..-+.++
T Consensus 56 vvvddkewaekairfvkslgaqvliiiydqd---qnrleefsrevrrrgfevrtvt------spddfkkslerl 120 (134)
T 2l69_A 56 VVVDDKEWAEKAIRFVKSLGAQVLIIIYDQD---QNRLEEFSREVRRRGFEVRTVT------SPDDFKKSLERL 120 (134)
T ss_dssp EECSSHHHHHHHHHHHHHHCCCCEEEEECSC---HHHHHHHHHHHHHTTCCEEEES------SHHHHHHHHHHH
T ss_pred EEEccHHHHHHHHHHHHhcCCeEEEEEEeCc---hhHHHHHHHHHHhcCceEEEec------ChHHHHHHHHHH
Confidence 3445677888899999999999999999554 4678889999999998875431 334555544443
No 408
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=21.61 E-value=99 Score=29.74 Aligned_cols=71 Identities=6% Similarity=-0.060 Sum_probs=46.4
Q ss_pred eeHHHHHHHHHHC-CCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeEEeecC---ccccceeccccccccEEEE
Q 003958 495 FCIDVFTAAINLL-PYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIITN---RTKMADFTQPYIESGLVVV 570 (784)
Q Consensus 495 ~~~dl~~~l~~~l-~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~~~t~~---r~~~~~fs~p~~~~~~~~~ 570 (784)
+..++++.+.++. +.++++.. +.-...+..|.+|++|+++....++.+ ....+ ...|+....++++
T Consensus 17 ~l~~~~~~f~~~~P~v~i~v~~---------~~S~~~~~~l~~g~~Dig~~~~~~~~~e~~~~~~l-~~~~i~~d~lvvv 86 (264)
T 4ecf_A 17 LVEAAGEQYTGEHLGTFINVQG---------GGTGTGLSQIQEGAVQIGNSDLFAGEQKGINARQL-VDHRVAVVGITPI 86 (264)
T ss_dssp HHHHHHHHHHHHSTTEEEEEEE---------ECHHHHHHHHHHTSSSEEEESSCGGGSTTCCGGGE-ECCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCceEEEEe---------CCCHHHHHHHHcCCCchhhccCCCChhHHhhccCC-EEEEEEEEEEEEE
Confidence 4456667777765 55533332 345678999999999999876544432 01122 3578888999999
Q ss_pred EeccC
Q 003958 571 APVRK 575 (784)
Q Consensus 571 ~~~~~ 575 (784)
++...
T Consensus 87 v~~~~ 91 (264)
T 4ecf_A 87 VNKKV 91 (264)
T ss_dssp ECTTS
T ss_pred EcCCC
Confidence 97654
No 409
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*
Probab=21.37 E-value=6.3e+02 Score=25.38 Aligned_cols=133 Identities=14% Similarity=0.091 Sum_probs=72.1
Q ss_pred EEEEEeecCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEc-cCchhhHHH
Q 003958 33 NIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIG-PQDAVTSHV 111 (784)
Q Consensus 33 ~IG~i~~~~~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiG-p~~s~~~~~ 111 (784)
.|+.+|...+ -..+..++.|..++ +|..+.+...++.-.--+.+.-..+.++.-+.+|+- .... ..
T Consensus 72 ~la~lF~epS---TRTR~SFE~A~~~L-------Gg~vi~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~~---~~ 138 (358)
T 4h31_A 72 NIALIFEKAS---TRTRCAFEVAAFDQ-------GAQVTYIGPSGSQIGDKESMKDTARVLGRMYDGIQYRGFGQ---AI 138 (358)
T ss_dssp EEEEEESSCC---SHHHHHHHHHHHHT-------TCEEEEECSSSSCBTTTBCHHHHHHHHHHHCSEEEEECSCH---HH
T ss_pred EEEEEeCCCC---hhhHHHHHHHHHHc-------CCeEEECCcccccccCccchhHHHHHhhccCceeEecccch---hH
Confidence 4788887654 25678899999884 455454433333322122222333333432344432 2222 33
Q ss_pred HHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHH---HHcCC-----cEEEEEEEcCCCcchhHHH
Q 003958 112 VSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV---DHYGW-----REVIAIYVDDDHGRNGIAA 183 (784)
Q Consensus 112 va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l---~~~~w-----~~v~ii~~d~~~g~~~~~~ 183 (784)
+..+++..++|+|. +-+ +...| .+++++++ +++++ .+|+++. |.. ...+..
T Consensus 139 ~~~la~~s~vPVIN-G~g-----~~~HP------------tQaL~Dl~Ti~e~~~~~~l~gl~ia~vG--D~~-~~va~S 197 (358)
T 4h31_A 139 VEELGAFAGVPVWN-GLT-----DEFHP------------TQILADFLTMLEHSQGKALADIQFAYLG--DAR-NNVGNS 197 (358)
T ss_dssp HHHHHHHSSSCEEE-SCC-----SSCCH------------HHHHHHHHHHHHTTTTCCGGGCEEEEES--CTT-SHHHHH
T ss_pred HHHhhhhccCceEC-CCC-----cCCCc------------hHHHHHHHHHHHHhcCCCcCceEEEecC--CCC-cccchH
Confidence 45667778899997 332 21112 35777764 45553 3566554 322 256777
Q ss_pred HHHHHhccCcEEEEee
Q 003958 184 LGDTLAAKRCRISFKA 199 (784)
Q Consensus 184 l~~~l~~~gi~v~~~~ 199 (784)
+...+...|.+|....
T Consensus 198 ~~~~~~~~g~~v~~~~ 213 (358)
T 4h31_A 198 LMVGAAKMGMDIRLVG 213 (358)
T ss_dssp HHHHHHHHTCEEEEES
T ss_pred HHHHHHhcCceEEEeC
Confidence 7777888888776543
No 410
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=21.01 E-value=2.1e+02 Score=28.04 Aligned_cols=35 Identities=9% Similarity=0.028 Sum_probs=25.1
Q ss_pred HHHHHHCCCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEE
Q 003958 501 TAAINLLPYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAV 543 (784)
Q Consensus 501 ~~l~~~l~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~ 543 (784)
+...++-|.+ ++++.+ ..+..+...|.+|++|+..
T Consensus 57 ~~~~~~~G~~--Ve~~~f------~~~~~~~~AL~~G~iD~~~ 91 (295)
T 1p99_A 57 KELAKKDDID--VEIKHF------SDYNLPNKALNDGDIDMNA 91 (295)
T ss_dssp HHHHGGGTCC--EEEEEC------SSTTSHHHHHHTTSSSEEE
T ss_pred HHHHHHcCCe--EEEEEe------CChHHHHHHHHcCCCCEEc
Confidence 3344455877 666665 3467789999999999975
No 411
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=20.99 E-value=3e+02 Score=22.18 Aligned_cols=58 Identities=10% Similarity=0.137 Sum_probs=37.5
Q ss_pred hhHHHHHHHHhccCc--EEEEeeccCCCCChhHHHHHHHHhhc-------CCceEEEEeccC--CcHHHHHHHHHHcC
Q 003958 179 NGIAALGDTLAAKRC--RISFKAPLSVEATEDEITDLLVKVAL-------TESRIIVVHTHY--NRGPVVFHVAQYLG 245 (784)
Q Consensus 179 ~~~~~l~~~l~~~gi--~v~~~~~~~~~~~~~d~~~~l~~l~~-------~~~~vIvl~~~~--~~~~~~~~~a~~~g 245 (784)
...+.++..+++.|. .+.. .. + ....++.+++ ..+++|++.... .....++++.++..
T Consensus 13 ~~~~~l~~~L~~~~~~~~v~~---~~---~---~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 13 ADIRLIQEALANSTVPHEVVT---VR---D---GMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp HHHHHHHHHHHTCSSCCEEEE---EC---S---HHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhcCCCceEEE---EC---C---HHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCc
Confidence 356778888888876 4432 11 2 3355566665 678999987543 45677888887753
No 412
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=20.95 E-value=2.2e+02 Score=23.37 Aligned_cols=55 Identities=5% Similarity=0.039 Sum_probs=38.1
Q ss_pred hHHHHHHHHhc-cCcEEEEeeccCCCCChhHHHHHHHHhhc-CCceEEEEeccCC---cHHHHHHHHHH
Q 003958 180 GIAALGDTLAA-KRCRISFKAPLSVEATEDEITDLLVKVAL-TESRIIVVHTHYN---RGPVVFHVAQY 243 (784)
Q Consensus 180 ~~~~l~~~l~~-~gi~v~~~~~~~~~~~~~d~~~~l~~l~~-~~~~vIvl~~~~~---~~~~~~~~a~~ 243 (784)
..+.++..+++ .|..+.. .. +....+..+++ ..+++|++..... +...++++.++
T Consensus 16 ~~~~l~~~L~~~~~~~v~~---~~------~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~ 75 (140)
T 3lua_A 16 EREKTKIIFDNIGEYDFIE---VE------NLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRN 75 (140)
T ss_dssp HHHHHHHHHHHHCCCEEEE---EC------SHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCccEEE---EC------CHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHh
Confidence 56677777877 7876652 21 23466777777 8899999986644 46677888777
No 413
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=20.91 E-value=1.5e+02 Score=27.29 Aligned_cols=67 Identities=10% Similarity=0.037 Sum_probs=47.0
Q ss_pred eeeHHHHHHHHHHC-CCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeEEeecCccccceeccccccccEEEEEe
Q 003958 494 GFCIDVFTAAINLL-PYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIITNRTKMADFTQPYIESGLVVVAP 572 (784)
Q Consensus 494 G~~~dl~~~l~~~l-~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~ 572 (784)
.+..+++..+.++. +.+ +++.. +....++..|.+|++|+++..... . .+ -+.++....++++++
T Consensus 40 ~~l~~~l~~f~~~~P~i~--l~i~~-------~~~~~~~~~L~~g~~Dl~i~~~~~--~---~~-~~~~l~~~~~~~v~~ 104 (238)
T 3onm_A 40 TLLPFLLNRVATLYPRLA--IDVRV-------KRSPFIADMLSSGEVDLAITTAKV--D---SH-PHVILRTSPTLWYCS 104 (238)
T ss_dssp THHHHHHHHHHHHCTTCC--EEEEE-------CCHHHHHHHHHHTSCSEEEECSCC------CC-CEEEEEEECEEEEEE
T ss_pred HHHHHHHHHHHHHCCCcE--EEEEE-------CCHHHHHHHHHCCCccEEEEecCC--C---Cc-ceEEeecCCEEEEEc
Confidence 45667888888776 444 55543 467889999999999999864332 1 12 346788888999987
Q ss_pred ccC
Q 003958 573 VRK 575 (784)
Q Consensus 573 ~~~ 575 (784)
+..
T Consensus 105 ~~~ 107 (238)
T 3onm_A 105 VDY 107 (238)
T ss_dssp TTC
T ss_pred CCC
Confidence 664
No 414
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=20.88 E-value=1.9e+02 Score=26.25 Aligned_cols=64 Identities=14% Similarity=0.166 Sum_probs=41.1
Q ss_pred cEEEEEEEcCCC--c---chhHHHHHHHHhccCcE--EEEeeccCCCCChhHHHHHHHHhhcC-CceEEEEecc
Q 003958 165 REVIAIYVDDDH--G---RNGIAALGDTLAAKRCR--ISFKAPLSVEATEDEITDLLVKVALT-ESRIIVVHTH 230 (784)
Q Consensus 165 ~~v~ii~~d~~~--g---~~~~~~l~~~l~~~gi~--v~~~~~~~~~~~~~d~~~~l~~l~~~-~~~vIvl~~~ 230 (784)
-+++||...|+- | ......+.+.+++.|.. +.....++ .+...+...+++..+. ++|+|+..+.
T Consensus 4 ~rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~--Dd~~~I~~al~~a~~~~~~DlVitTGG 75 (195)
T 1di6_A 4 LRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIP--DEQAIIEQTLCELVDEMSCHLVLTTGG 75 (195)
T ss_dssp EEEEEEEEECC-------CCHHHHHHHHHHHHBCSCEEEEEEEEE--SCHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred CEEEEEEECCCCCCCeEEchHHHHHHHHHHHcCCCCceEEEEEeC--CCHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 367777755442 1 23356778888888876 44444555 3566777788776653 7899998744
No 415
>1ble_A Fructose permease; phosphotransferase, sugar transport; 2.90A {Bacillus subtilis} SCOP: c.38.1.1
Probab=20.73 E-value=80 Score=27.91 Aligned_cols=80 Identities=8% Similarity=0.029 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHcCCcEEEEEEEcCCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEecc
Q 003958 151 QMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH 230 (784)
Q Consensus 151 ~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~ 230 (784)
+++.+..|.++++-++|.++- |..-.....+.+.+.+.-.|+.+.. + +.++....+++-+..+.++++++-+
T Consensus 15 HGQV~t~W~~~~~~~~IiVvn-D~vA~D~~~k~~lk~a~P~gvk~~i---~----sve~ai~~~~~~~~~~~~v~ll~k~ 86 (163)
T 1ble_A 15 HGQILTRWIKVHAADRIIVVS-DDIAQDEMRKTLILSVAPSNVKASA---V----SVSKMAKAFHSPRYEGVTAMLLFEN 86 (163)
T ss_dssp CTTHHHHHHHHHTCSEEEEEC-HHHHHCHHHHHHHHTSSCTTSEEEE---E----CHHHHHHHHHCSTTTTCEEEEEESS
T ss_pred chhheeeeccccCCCEEEEeC-ccccCCHHHHHHHHhhCCCCCeEEE---E----EHHHHHHHHhcccCCCceEEEEECC
Confidence 577888999999999998885 3222223445555555556777653 2 2344445555544467889999988
Q ss_pred CCcHHHHH
Q 003958 231 YNRGPVVF 238 (784)
Q Consensus 231 ~~~~~~~~ 238 (784)
+.++..++
T Consensus 87 p~d~~~lv 94 (163)
T 1ble_A 87 PSDIVSLI 94 (163)
T ss_dssp SHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887664
No 416
>3f2i_A ALR0221 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG, function; 2.00A {Nostoc SP}
Probab=20.59 E-value=3.1e+02 Score=24.12 Aligned_cols=92 Identities=12% Similarity=0.036 Sum_probs=51.5
Q ss_pred ChHHHHHHHHHHHHHcCCcEEEEEEEcCCCcchhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhc----CCc
Q 003958 147 SDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVAL----TES 222 (784)
Q Consensus 147 s~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~----~~~ 222 (784)
.-..++..+++.++..+..--.|+.+.-.-.+..++.+.+. .....+.....+.+ ..+....++.+.+ .+.
T Consensus 28 ~G~~qA~~~~~~L~~~~~~~~~i~sSp~~Ra~qTa~~l~~~--~~~~~~~~~~~L~~---~~~~~~~~~~l~~~~~~~~~ 102 (172)
T 3f2i_A 28 EGKQKTEKVAYRLVKLGRQFDLIVTSPLIRARQTAEILLAS--GLSCQLEESNHLAP---NGNIFNWLDYWLKPKNFPEN 102 (172)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSEEEECSSHHHHHHHHHHHHT--TSCSCEEECGGGST---TCCHHHHHHHTHHHHCCCTT
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEECChHHHHHHHHHHHhc--CCCCCeEECcccCC---ccCHHHHHHHHHHhccCCCC
Confidence 34578889999998865443344444433222233333322 12223433333322 2334455555542 567
Q ss_pred eEEEEeccCCcHHHHHHHHHH
Q 003958 223 RIIVVHTHYNRGPVVFHVAQY 243 (784)
Q Consensus 223 ~vIvl~~~~~~~~~~~~~a~~ 243 (784)
+.+++++.......+...+..
T Consensus 103 ~~vllVgH~P~l~~l~~~L~~ 123 (172)
T 3f2i_A 103 AQIAIVGHEPCLSNWTEILLW 123 (172)
T ss_dssp CEEEEEECTTHHHHHHHHHHH
T ss_pred CEEEEEeCChHHHHHHHHHhc
Confidence 788888999888888887765
No 417
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=20.56 E-value=2.7e+02 Score=22.46 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=36.8
Q ss_pred hHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEecc--CCcHHHHHHHHHHcC
Q 003958 180 GIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH--YNRGPVVFHVAQYLG 245 (784)
Q Consensus 180 ~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~--~~~~~~~~~~a~~~g 245 (784)
..+.++..+++.|..+... .. +.. ..+..+++..+++|++... ..+...++++.++..
T Consensus 13 ~~~~l~~~L~~~g~~v~~~--~~---~~~---~a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~~ 72 (134)
T 3f6c_A 13 AIAAIRNLLIKNDIEILAE--LT---EGG---SAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQ 72 (134)
T ss_dssp HHHHHHHHHHHTTEEEEEE--ES---SST---THHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCCcEEEEE--cC---CHH---HHHHHHHhcCCCEEEEecCCCCCChHHHHHHHHhcC
Confidence 5677888888888665422 11 112 2344445567999999854 345778888888754
No 418
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=20.54 E-value=6.1e+02 Score=24.86 Aligned_cols=99 Identities=12% Similarity=0.066 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEEcCCCc----------chhHHHHHHHHhcc-C--cEEEEeeccCCC-CCh----hHH
Q 003958 149 QYQMAAIAEIVDHYGWREVIAIYVDDDHG----------RNGIAALGDTLAAK-R--CRISFKAPLSVE-ATE----DEI 210 (784)
Q Consensus 149 ~~~~~ai~~~l~~~~w~~v~ii~~d~~~g----------~~~~~~l~~~l~~~-g--i~v~~~~~~~~~-~~~----~d~ 210 (784)
....+..+.-+...|.+.|..+..|..-+ -..+..+-+.+++. | .+|.. .-+|.. ... .++
T Consensus 85 ~~~l~~~L~~~~~~GI~niLaLrGD~p~~~g~~~~~~~~f~~a~~Lv~~ir~~~g~~f~igv-A~yPE~Hp~~~~~~~d~ 163 (310)
T 3apt_A 85 RKEVAEVLHRFVESGVENLLALRGDPPRGERVFRPHPEGFRYAAELVALIRERYGDRVSVGG-AAYPEGHPESESLEADL 163 (310)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCCCSTTCCSCCCCTTSCSSHHHHHHHHHHHHGGGSEEEE-EECTTCCTTSSCHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEE-EeCCCcCCCCCCHHHHH
Confidence 33445555556788999999999774322 11244444444444 4 56654 345532 112 244
Q ss_pred HHHHHHhhcCCceEEEE--eccCCcHHHHHHHHHHcCCCCC
Q 003958 211 TDLLVKVALTESRIIVV--HTHYNRGPVVFHVAQYLGMLGT 249 (784)
Q Consensus 211 ~~~l~~l~~~~~~vIvl--~~~~~~~~~~~~~a~~~g~~~~ 249 (784)
..+.+|+. .+++.++. +.+.+....+++.+++.|...+
T Consensus 164 ~~Lk~Kv~-aGAdf~iTQ~ffD~~~~~~f~~~~r~~Gi~vP 203 (310)
T 3apt_A 164 RHFKAKVE-AGLDFAITQLFFNNAHYFGFLERARRAGIGIP 203 (310)
T ss_dssp HHHHHHHH-HHCSEEEECCCSCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHHH-cCCCEEEecccCCHHHHHHHHHHHHHcCCCCe
Confidence 44444443 57887776 3556778889999999887655
No 419
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae}
Probab=20.49 E-value=1.3e+02 Score=28.88 Aligned_cols=71 Identities=8% Similarity=0.004 Sum_probs=44.9
Q ss_pred eeHHHHHHHHHHC-CCccceEEeeCCCCCCCCChhHHHHHHHcCcccEEEeeEEeec-Ccc--ccceeccccccccEEEE
Q 003958 495 FCIDVFTAAINLL-PYAVPYKLIPFGDGHNNPSCTELVRLITAGVYDAAVGDIAIIT-NRT--KMADFTQPYIESGLVVV 570 (784)
Q Consensus 495 ~~~dl~~~l~~~l-~f~~~~~~~~~~~~~~~~~~~g~i~~l~~~~~D~~~~~~~~t~-~r~--~~~~fs~p~~~~~~~~~ 570 (784)
+.-.+++.+.+.. +.++++.. +.-...+..|.+|++|+++....... +.. ..+ ...|+...+++++
T Consensus 17 ~~~~~~~~F~~~~P~v~i~v~~---------~gS~~gi~~l~~g~~Dig~~~~~~~~~~~~~~~~l-~~~~ia~d~lvvv 86 (265)
T 4exl_A 17 LVEVAADEFGTIHVGKTVNVQG---------GGSGTGLSQVQSGAVDIGNSDVFAEEKDGIDASAL-VDHKVAVAGLALI 86 (265)
T ss_dssp HHHHHHHHHHHHSTTCEEEEEE---------ECHHHHHHHHHTTSSSEEEESSCGGGSTTCCGGGE-ECCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCceEEEee---------CCcHHHHHHHHcCCCccccccCCcchhhcccccCc-eEeeEEEEEEEEE
Confidence 3445566666666 56644433 34667899999999999886533321 011 111 3578888999999
Q ss_pred EeccC
Q 003958 571 APVRK 575 (784)
Q Consensus 571 ~~~~~ 575 (784)
++...
T Consensus 87 v~~~~ 91 (265)
T 4exl_A 87 VNKEV 91 (265)
T ss_dssp ECTTC
T ss_pred ECCCC
Confidence 97653
No 420
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=20.45 E-value=2.6e+02 Score=22.76 Aligned_cols=58 Identities=14% Similarity=0.111 Sum_probs=37.7
Q ss_pred hhHHHHHHHHhccCcEEEEeeccCCCCChhHHHHHHHHhhcCCceEEEEecc-------CCcHHHHHHHHHHcC
Q 003958 179 NGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVHTH-------YNRGPVVFHVAQYLG 245 (784)
Q Consensus 179 ~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vIvl~~~-------~~~~~~~~~~a~~~g 245 (784)
...+.++..+++.|..+.. .. + ....+..+++..+++|++... ......++++.++..
T Consensus 14 ~~~~~l~~~L~~~g~~v~~---~~---~---~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~ 78 (140)
T 2qr3_A 14 GVLTAVQLLLKNHFSKVIT---LS---S---PVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQY 78 (140)
T ss_dssp HHHHHHHHHHTTTSSEEEE---EC---C---HHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCcEEEE---eC---C---HHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhC
Confidence 3567788888888876652 21 2 234555566677999999854 335667788877753
No 421
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=20.14 E-value=6.2e+02 Score=24.80 Aligned_cols=132 Identities=14% Similarity=0.157 Sum_probs=72.5
Q ss_pred EEEEEeecCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCceEEEc-cCchhhHHH
Q 003958 33 NIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLALAEALHLMEGQTVAIIG-PQDAVTSHV 111 (784)
Q Consensus 33 ~IG~i~~~~~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aiiG-p~~s~~~~~ 111 (784)
.++.+|...+ -..+..++.|..++ +|..+.+...+++-.--+.+.-..+.++.-+.+|+- +.... .
T Consensus 38 ~la~lF~e~S---TRTR~SFe~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~---~ 104 (307)
T 3tpf_A 38 TLAMIFEKNS---TRTRMAFELAITEL-------GGKALFLSSNDLQLSRGEPVKDTARVIGAMVDFVMMRVNKHE---T 104 (307)
T ss_dssp EEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEECTTTCCTTTSSCHHHHHHHHHHHSSEEEEECSCHH---H
T ss_pred EEEEEecCCC---cchHHhHHHHHHHc-------CCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCChH---H
Confidence 4788887654 35678899999884 455555443343322122222233333433444443 22223 3
Q ss_pred HHHhhhcCCccEEecccCCCCCCcCCCCceEeecCChHHHHHHHHHHH---HHcC-Cc---EEEEEEEcCCCcchhHHHH
Q 003958 112 VSHVANELQVPLLSFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIV---DHYG-WR---EVIAIYVDDDHGRNGIAAL 184 (784)
Q Consensus 112 va~~~~~~~ip~Is~~a~~~~l~~~~~p~~~r~~ps~~~~~~ai~~~l---~~~~-w~---~v~ii~~d~~~g~~~~~~l 184 (784)
+..+++..++|+|.-+. + ...| .+++++++ +++| ++ +|+++.+ +......+
T Consensus 105 ~~~lA~~~~vPVINag~-~-----~~HP------------tQaLaDl~Ti~e~~g~l~~gl~va~vGD----~~~va~Sl 162 (307)
T 3tpf_A 105 LLEFARYSKAPVINALS-E-----LYHP------------TQVLGDLFTIKEWNKMQNGIAKVAFIGD----SNNMCNSW 162 (307)
T ss_dssp HHHHHHHCSSCEEEEEC-S-----SCCH------------HHHHHHHHHHHHTTCCGGGCCEEEEESC----SSHHHHHH
T ss_pred HHHHHHhCCCCEEeCCC-C-----CcCc------------HHHHHHHHHHHHHhCCCCCCCEEEEEcC----CCccHHHH
Confidence 44566777899997332 1 1112 35666663 5554 44 6666652 34567777
Q ss_pred HHHHhccCcEEEEee
Q 003958 185 GDTLAAKRCRISFKA 199 (784)
Q Consensus 185 ~~~l~~~gi~v~~~~ 199 (784)
-..+...|.++....
T Consensus 163 ~~~~~~~G~~v~~~~ 177 (307)
T 3tpf_A 163 LITAAILGFEISIAM 177 (307)
T ss_dssp HHHHHHHTCEEEEEC
T ss_pred HHHHHHcCCEEEEEC
Confidence 777888888776543
No 422
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=20.08 E-value=91 Score=30.70 Aligned_cols=45 Identities=22% Similarity=0.120 Sum_probs=25.3
Q ss_pred CceEEEEEEeecCCcchhhHHHHHHHHHHHHhcCCCCCCCCEEEEEEecCCCCHHHHH
Q 003958 29 PSVVNIGALLSFSTNVGKVAKLAIKAAVDDVNSDPTTLGGTKLKLQMQDCNHSGFLAL 86 (784)
Q Consensus 29 ~~~i~IG~i~~~~~~~g~~~~~a~~~Ave~IN~~~~il~g~~l~~~~~D~~~~~~~a~ 86 (784)
+.+|+||.. ..++ .....++ +.+-+. |++++++.+++...+..|+
T Consensus 38 ~~~i~IG~~-~~~~----~~~~~~~---~~~~~~-----G~~Ve~~~f~~~~~~~~AL 82 (295)
T 1p99_A 38 DKKVTIGVA-SNDT----KAWEKVK---ELAKKD-----DIDVEIKHFSDYNLPNKAL 82 (295)
T ss_dssp --CEEEEES-SSCC----HHHHHHH---HHHGGG-----TCCEEEEECSSTTSHHHHH
T ss_pred CCeEEEEEe-CCcH----HHHHHHH---HHHHHc-----CCeEEEEEeCChHHHHHHH
Confidence 457999998 4332 1122221 223222 6789999988877776654
Done!