BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003959
(783 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96JB2|COG3_HUMAN Conserved oligomeric Golgi complex subunit 3 OS=Homo sapiens
GN=COG3 PE=1 SV=3
Length = 828
Score = 446 bits (1147), Expect = e-124, Method: Compositional matrix adjust.
Identities = 260/730 (35%), Positives = 404/730 (55%), Gaps = 63/730 (8%)
Query: 93 QFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVA 152
QF++WF L+ M + KYR + L G + CD IL V+ L LQ Q+ V+
Sbjct: 107 QFFSWFAKLQTQMDQDEGTKYRQMRDYLSGFQEQCDAILNDVNSALQHLESLQKQYLFVS 166
Query: 153 TKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLL 212
KT TLH+AC++L+ E+ L++ AE +Q KL YF+ELE I SP ++V + F +L
Sbjct: 167 NKTGTLHEACEQLLKEQSELVDLAENIQQKLSYFNELETINTKLNSPTLSVNSDGFIPML 226
Query: 213 KRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQAAIRSSG 272
+LD+CI Y+ +P + + +YLLKF+Q S+AL +++++ ++ L++ +SQ+ ++
Sbjct: 227 AKLDDCITYISSHPNFKDYPIYLLKFKQCLSKALHLMKTYTVNTLQTLTSQL---LKRDP 283
Query: 273 GSKTSVSEGVEASLIYVRFKAAASELKPVLEEIESRSSK-KEYVQILEECHKLYCEQRLS 331
S + +L YV+F+AAA +++ ++E+IE RS K EY Q+L + H+ Y +QR
Sbjct: 284 SSVPNADNAF--TLFYVKFRAAAPKVRTLIEQIELRSEKIPEYQQLLNDIHQCYLDQREL 341
Query: 332 LVKGIVQQRISEFSKKETLP--SLTRSGCAYLMQVCQLEHQLFDHFFPSSSEDISSLAPL 389
L+ + ++E + + +L RSGCA+++ VCQ EHQL++ FF ++ S L L
Sbjct: 342 LLGPSIACTVAELTSQNNRDHCALVRSGCAFMVHVCQDEHQLYNEFF---TKPTSKLDEL 398
Query: 390 IDPLSTFLYDILRPKLIHETNVDLLCELVDILKVEVLGEQLSRRSESLAGLRPTLERILA 449
++ L LYD+ RP +IH +++ L EL ILK EVL + + +E L ++++L
Sbjct: 399 LEKLCVSLYDVFRPLIIHVIHLETLSELCGILKNEVLEDHVQNNAEQLGAFAAGVKQMLE 458
Query: 450 DVHERLTFRARTHIRDEIANYIPSDEDLNYPSKL-------------------------- 483
DV ERL +R +I+ +I Y P+ DL YP KL
Sbjct: 459 DVQERLVYRTHIYIQTDITGYKPAPGDLAYPDKLVMMEQIAQSLKDEQKKVPSEASFSDV 518
Query: 484 --EQSAGTKLETTPADE--NP---------DVYKTWYPPLEKTVSCLSKLYQCLEQAVFT 530
E+ L + + E NP D++ WYP + +T+ CLSKLY+C+++AVF
Sbjct: 519 HLEEGESNSLTKSGSTESLNPRPQTTISPADLHGMWYPTVRRTLVCLSKLYRCIDRAVFQ 578
Query: 531 GLAQEAVEVCSESIQKASKLIAKRSTPMDGQLFLIKYLLILREQIAPFDIEFSVTHKELD 590
GL+QEA+ C +S+ AS+ I+K T +DGQLFLIK+LLILREQIAPF EF++ LD
Sbjct: 579 GLSQEALSACIQSLLGASESISKNKTQIDGQLFLIKHLLILREQIAPFHTEFTIKEISLD 638
Query: 591 FSHLLEHLRRILRGQA--SLFDWSRSTSLARTL---SPRVLESQIDAKKELEKSLKATCE 645
+ +IL F + + +L L +P + E +D+KK++++ LK+ CE
Sbjct: 639 LKKTRDAAFKILNPMTVPRFFRLNSNNALIEFLLEGTPEIREHYLDSKKDVDRHLKSACE 698
Query: 646 EFIMAVTKLVVDPMLSFVAKVTAVKVALSSGNQNQNVDSLMAKPLKDQAFATPDKVAELV 705
+FI TKL V+ + F+ KV+A+K S G L Q +A P KV +L
Sbjct: 699 QFIQQQTKLFVEQLEEFMTKVSALKTMASQGGPKYT--------LSQQPWAQPAKVNDLA 750
Query: 706 HKVNAAIQQELPPVMAKMKLYLQNPSTRTILFKPVKTNIVEAHIQVQSLLKAEYMPEEQS 765
I+ +LP + M LYL N T ILFKPV+ NI + + +LLK E+ PE+
Sbjct: 751 ATAYKTIKTKLPVTLRSMSLYLSNKDTEFILFKPVRNNIQQVFQKFHALLKEEFSPEDIQ 810
Query: 766 IINMVSMPDL 775
II SM L
Sbjct: 811 IIACPSMEQL 820
>sp|Q8CI04|COG3_MOUSE Conserved oligomeric Golgi complex subunit 3 OS=Mus musculus
GN=Cog3 PE=1 SV=3
Length = 820
Score = 439 bits (1128), Expect = e-122, Method: Compositional matrix adjust.
Identities = 271/804 (33%), Positives = 426/804 (52%), Gaps = 75/804 (9%)
Query: 31 APLSEQQQAAIGSLFHVVAERPFPVNLAQEHVPG-QDNGLSV--------ATKD---HSF 78
APL+++Q ++ L V P P L E V L + +T+D F
Sbjct: 25 APLTDRQTDSVLELKAAVENLPVPAELPIEDVCSLASQSLPIELTAVVPDSTEDILLKGF 84
Query: 79 GESDAIEAVLVNTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTL 138
E + QF++WF L+ M + KYR + L G + CD IL V+ L
Sbjct: 85 TSLGMEEERIETAQQFFSWFAKLQTQMDQDEGTKYRQMRDYLSGFQEQCDAILNDVNSAL 144
Query: 139 DLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFYS 198
LQ Q+ V+ KT TLH+AC++L+ E+ L + AE +Q KL YF+ELE I S
Sbjct: 145 QHLESLQKQYLFVSNKTGTLHEACEQLLKEQSELADLAEHIQQKLSYFNELETINTKLNS 204
Query: 199 PNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLK 258
P ++V + F +L +LD+CI Y+ +P + + VYLLKF+Q S+AL +++++ ++ L+
Sbjct: 205 PTLSVNSEGFIPMLAKLDDCITYISSHPNFKDYPVYLLKFKQCLSKALHLMKTYTVNTLQ 264
Query: 259 SASSQVQAAIRSSGGSKTSVSEGVEASLIYVRFKAAASELKPVLEEIESRSSK-KEYVQI 317
+ ++Q+ ++ S + +L YV+F+AAA +++ ++E+IE RS K EY +
Sbjct: 265 TLTNQL---LKRDPSSVPNADNAF--TLFYVKFRAAAPKVRTLIEQIEQRSEKIPEYQHL 319
Query: 318 LEECHKLYCEQRLSLVKGIVQQRISEFSKKETLP--SLTRSGCAYLMQVCQLEHQLFDHF 375
L + H+ Y +QR L+ + ++E + + +L RSGCA+++ VCQ EHQL++ F
Sbjct: 320 LNDIHQCYLDQRELLLGPSIAYTVTELTSQNNRDHCALVRSGCAFMVHVCQDEHQLYNEF 379
Query: 376 FPSSSEDISSLAPLIDPLSTFLYDILRPKLIHETNVDLLCELVDILKVEVLGEQLSRRSE 435
F ++ S L L++ L LYD+ RP +IH +++ L EL ILK EVL + + +E
Sbjct: 380 F---TKPTSKLDELLEKLCVSLYDVFRPLIIHVIHLETLSELCGILKNEVLEDHVQHNAE 436
Query: 436 SLAGLRPTLERILADVHERLTFRARTHIRDEIANYIPSDEDLNYPSKL------------ 483
L ++++L DV ERL +R +I+ +I Y P+ DL YP KL
Sbjct: 437 QLGAFAAGVKQMLEDVQERLVYRTHIYIQTDITGYKPAPGDLAYPDKLVMMEQIAQSLKD 496
Query: 484 ------------------EQSAGTKLETTPADENP---------DVYKTWYPPLEKTVSC 516
+++G + + NP D++ WYP + +T+ C
Sbjct: 497 EQKKAPSEASFSDVRLEEGEASGLRKSGSTDSLNPRPQTTISPADLHGMWYPTVRRTLVC 556
Query: 517 LSKLYQCLEQAVFTGLAQEAVEVCSESIQKASKLIAKRSTPMDGQLFLIKYLLILREQIA 576
LSKLY+C+++AVF GL+QEA+ C +S+ AS+ I+K T +DGQLFLIK+LLILREQIA
Sbjct: 557 LSKLYRCIDRAVFQGLSQEALSACIQSLLGASESISKNKTQIDGQLFLIKHLLILREQIA 616
Query: 577 PFDIEFSVTHKELDFSHLLEHLRRILRGQA--SLFDWSRSTSLARTL---SPRVLESQID 631
PF EF++ LD + +IL F + + +L L +P + E +D
Sbjct: 617 PFHTEFTIKEISLDLKKTRDAAFKILNPMTVPRFFRLNSNNALIEFLLEGTPEIREHYLD 676
Query: 632 AKKELEKSLKATCEEFIMAVTKLVVDPMLSFVAKVTAVKVALSSGNQNQNVDSLMAKPLK 691
+KK++++ LK+ CE+FI T+L + + F+ KV+A+K S G L
Sbjct: 677 SKKDVDRHLKSACEQFIQQQTRLFGEQLEEFMTKVSALKTMASQGGPKYT--------LS 728
Query: 692 DQAFATPDKVAELVHKVNAAIQQELPPVMAKMKLYLQNPSTRTILFKPVKTNIVEAHIQV 751
Q +A P KV +LV I+ +LP + M LYL N T ILFKPV+ NI + +
Sbjct: 729 QQPWAQPAKVNDLVATAYKTIKTKLPLTLRSMALYLSNKDTEFILFKPVRNNIQQVFQKF 788
Query: 752 QSLLKAEYMPEEQSIINMVSMPDL 775
+LLK E+ E+ II SM L
Sbjct: 789 HALLKEEFSSEDIQIIACPSMEQL 812
>sp|Q16ZN9|COG3_AEDAE Conserved oligomeric Golgi complex subunit 3 OS=Aedes aegypti
GN=Cog3 PE=3 SV=1
Length = 899
Score = 402 bits (1033), Expect = e-111, Method: Compositional matrix adjust.
Identities = 251/814 (30%), Positives = 431/814 (52%), Gaps = 74/814 (9%)
Query: 27 WEQN----APLSEQQQAAIGSLFHVVAERPFPVNLAQEHVPGQDNGLSVATKDHSFGESD 82
WEQ APLS Q I L + P A + Q+ L T F S
Sbjct: 24 WEQKDNPLAPLSSAQNEFINRLADSLTGATSPG--ANPLMESQELSLECKTTLVDFKNSG 81
Query: 83 AIEAVLVNTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFN 142
+ V+ +T F +W+ ++ + ++ Y Y L R CD +L ++D +L+
Sbjct: 82 S---VIDSTQDFLSWYNSIDSEILEHYDDVYLDYYGQLKQRSVECDKLLEEIDVSLESLQ 138
Query: 143 ELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMN 202
+L ++ V+ KT +LH A + L+ ++ +L E E ++ +LKYF + E+I +P +
Sbjct: 139 KLTNEYKFVSEKTSSLHQASENLLQDQTKLNEIGEEIRRRLKYFSQAESIYQRLQNPTFS 198
Query: 203 VGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASS 262
V N F +L +DEC+ Y+ NP ++E+ Y +K+R S+A M+R++V ++L +A++
Sbjct: 199 VSNDTFVEILNTIDECLEYMRVNPGFSEAFAYGVKYRNCLSKATQMMRNYVSNILTNATA 258
Query: 263 QVQAAIRSSGGSKTSVSEGVEAS--LIYVRFKAAASELKPVLEEIESRSSKK-EYVQILE 319
Q+ RS +T + +G EA+ L Y +F+A+A +K + IE R + EY Q+L
Sbjct: 259 QILGPQRS----ETGMEQGSEAAFALYYGKFQASAPRVKRITGMIEGRLDRSVEYEQLLA 314
Query: 320 ECHKLYCEQRLSLVKGIVQQRISEFSKKETLP--SLTRSGCAYLMQVCQLEHQLFDHFFP 377
H+ + R +++ V+Q I + SKK +L RS CA+++ VCQ EH+LF FF
Sbjct: 315 ALHQQFLANRATIMSSGVEQAIRDLSKKHKGDHCALVRSACAFMVHVCQDEHRLFFQFFT 374
Query: 378 SSSEDISSLAPLIDPLSTFLYDILRPKLIHETNVDLLCELVDILKVEVLGEQLSRRSESL 437
+SS L ++ L T LYD LRP +I +++ L E+ IL+VE+L E ++ ESL
Sbjct: 375 NSS---PQLTAYMEGLCTILYDTLRPFIIRIDHLETLAEICSILRVEMLDEHVTYNPESL 431
Query: 438 AGLRPTLERILADVHERLTFRARTHIRDEIANYIPSDEDLNYPSKLE------------- 484
+ ++L DV ER+ FRA+ ++ +I NY PS DL YP KLE
Sbjct: 432 EAFAKIVYQLLQDVQERIGFRAQNYLESDILNYRPSAGDLAYPEKLEMMESIALSLQENY 491
Query: 485 -----------------------------QSAGTKLETTPADENPDVYKTWYPPLEKTVS 515
Q++ ++ +PAD ++ WYP + +T+
Sbjct: 492 LRRADSRSSIVSMTSLASQEVESINQQAEQASKSRASNSPAD----LHGMWYPTVRRTLV 547
Query: 516 CLSKLYQCLEQAVFTGLAQEAVEVCSESIQKASKLIAKRSTPMDGQLFLIKYLLILREQI 575
CLS+LY+C+++A+F L+Q+A+ C +S+ A+ I+++ T +DG+LF IK+LLILREQI
Sbjct: 548 CLSRLYRCIDRAIFQSLSQQALAYCIQSVSNAAAQISQKKTSIDGELFEIKHLLILREQI 607
Query: 576 APFDIEFSVTHKELDFSHLLEHLRRILRGQASLFDWSRSTSLARTL---SPRVLESQIDA 632
APF ++F+V LDFS + +L+ + LF + +L L +P+V E +D+
Sbjct: 608 APFRVDFTVKETSLDFSKVKTAAFELLQKRKQLFALGSNNALLEFLLDGTPQVKEQLLDS 667
Query: 633 KKELEKSLKATCEEFIMAVTKLVVDPMLSFVAKV-TAVKVALSSGNQNQNVDSLMAK--P 689
+K++++ LK CE FI T+ +V P+L+F+ VK + +SG+ +
Sbjct: 668 RKDVDRQLKMVCEMFIKDATRQLVGPILNFIDTAQNHVKQSAASGSSQPGAKQQQQQGLA 727
Query: 690 LKDQAFATPDKVAELVHKVNAAIQQELPPVMAKMKLYLQNPSTRTILFKPVKTNIVEAHI 749
L+ AFA P +++ ++ + I+ +L + M+LYL N T ILF+P++ NI+ + +
Sbjct: 728 LRMAAFAAPQQISSIIQESIRNIKTKLGALQRSMQLYLANKDTEFILFRPIRNNIIGSFV 787
Query: 750 QVQSLLKAE-YMPEEQSIINMVSMPDLQAQLDSL 782
+++ LL Y ++ ++++ S + L S+
Sbjct: 788 KLEQLLTTNSYSKDDLTVVSCPSAEQISVLLSSV 821
>sp|Q961G1|COG3_DROME Conserved oligomeric Golgi complex subunit 3 OS=Drosophila
melanogaster GN=Cog3 PE=1 SV=1
Length = 905
Score = 392 bits (1006), Expect = e-108, Method: Compositional matrix adjust.
Identities = 224/726 (30%), Positives = 400/726 (55%), Gaps = 54/726 (7%)
Query: 88 LVNTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQ 147
L NTN+F WF D+ ++ + Y Y+ L R C +L Q+ G ++ L +
Sbjct: 89 LQNTNEFLLWFADVSAEIEQRGDADYHKYLQQLEQRKAECSHMLDQIAGAMERLGALCDE 148
Query: 148 HHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGN 207
+ V+ KT L+ A ++L+ E++RL E + +Q +L YF ++E + SP ++V +
Sbjct: 149 YDFVSQKTSALNTASEQLIEEQERLQELSHEIQRRLHYFSQVELLNQRLQSPTLSVASEA 208
Query: 208 FFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQAA 267
F L ++DEC+ Y+E NP++ +++ Y +K+RQ ++A G++R++V SV+ A+ A
Sbjct: 209 FRECLNKIDECLNYIEENPKFKDAAAYNVKYRQCLAKASGLVRNYVTSVINQATE----A 264
Query: 268 IRSSGGSKTSVSEGVEA-----SLIYVRFKAAASELKPVLEEIESRSSKK-EYVQILEEC 321
+ S ++A +L Y +++ AA+++K V + IESRS +Y Q++ +
Sbjct: 265 TLHPKNNMPDASAALKAPDAAFALYYGKYQTAAAKVKRVAQLIESRSEHSLDYAQLMADL 324
Query: 322 HKLYCEQRLSLVKGIVQQRIS--EFSKKETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSS 379
+ Y QR S++ V I + + K SLTRS CA+L+ VCQ E +LF FF +
Sbjct: 325 QQHYLAQRASVMSPAVNLSIQNVKVAHKGDHCSLTRSACAFLVHVCQDEQRLFYQFFSTG 384
Query: 380 SEDISSLAPLIDPLSTFLYDILRPKLIHETNVDLLCELVDILKVEVLGEQLSRRSESLAG 439
+ L ++ L T LYD +RP +IH +++ L E+ IL++E+L E + + +L
Sbjct: 385 A---PHLTVYLEGLCTILYDTMRPFIIHINHLETLAEICSILRIEMLEEHVQQNPVALEA 441
Query: 440 LRPTLERILADVHERLTFRARTHIRDEIANYIPSDEDLNYPSKLE--------------- 484
++L DV ERL FRA +++ +I N+ PS DL YP KLE
Sbjct: 442 FATIAHQLLQDVQERLVFRAHLYLQSDIQNFNPSSGDLAYPEKLEMMESIALSLQEPAPL 501
Query: 485 -------------------QSAGTKLETTPADENPDVYKTWYPPLEKTVSCLSKLYQCLE 525
+S T + D++ WYP + +T+ CLS+LY+C++
Sbjct: 502 RRSDSRNSMVSSVSSAVETESVATAYTVKQMNSPADLHGMWYPTVRRTLVCLSRLYRCVD 561
Query: 526 QAVFTGLAQEAVEVCSESIQKASKLIAKRSTPMDGQLFLIKYLLILREQIAPFDIEFSVT 585
+ +F GL+QEA+++C +S+ A+ I+ TP+DG+LF IK+LLILREQIAPF ++F+V
Sbjct: 562 RPIFQGLSQEALKLCIQSVSHAAGKISANKTPIDGELFEIKHLLILREQIAPFRVDFTVK 621
Query: 586 HKELDFSHLLEHLRRILRGQASLFDWSRSTSLARTL---SPRVLESQIDAKKELEKSLKA 642
LDFS + +L+ + LF + +L L +P++ E +D++KE+++ LK+
Sbjct: 622 ETSLDFSKVKTAAFGLLQKRKQLFSMGSNNALLEFLLEGTPQIKEHLLDSRKEVDRQLKS 681
Query: 643 TCEEFIMAVTKLVVDPMLSFVAKVTAVKVALSSGNQNQNVDSLMAK-PLKDQAFATPDKV 701
CE++I +++V P+++F+ K ++ +A S+ Q+ +S A L+ +A+P ++
Sbjct: 682 VCEKYIKDAVQMLVGPLITFLEKAQSL-LAQSTPATPQSPESTKASYVLRQSPWASPQQI 740
Query: 702 AELVHKVNAAIQQELPPVMAKMKLYLQNPSTRTILFKPVKTNIVEAHIQVQSLLKAEYMP 761
+ ++ + I+ +L + M+LYL N T I+F+P++ NI+++ ++++ LL
Sbjct: 741 SSIIQETQRLIKAKLAVLQRSMQLYLSNRDTEFIIFRPIRNNIIQSFVKLEQLLTTNGYS 800
Query: 762 EEQSII 767
+ II
Sbjct: 801 TDDMII 806
>sp|Q29N70|COG3_DROPS Conserved oligomeric Golgi complex subunit 3 OS=Drosophila
pseudoobscura pseudoobscura GN=Cog3 PE=3 SV=1
Length = 914
Score = 385 bits (990), Expect = e-106, Method: Compositional matrix adjust.
Identities = 220/727 (30%), Positives = 395/727 (54%), Gaps = 54/727 (7%)
Query: 88 LVNTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQ 147
L NTN F WF D+ ++ + Y Y+ L R C +L Q+ +D L +
Sbjct: 91 LQNTNDFLLWFVDVNAEIEQRGDAVYHKYLQQLEQRKAECSHMLGQISVAMDRLGALSDE 150
Query: 148 HHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGN 207
+ V+ KT L+ A ++L+ E+++L + + +Q +L YF ++E + SP ++V +
Sbjct: 151 YEFVSQKTSALNTASEQLIDEQEKLQDLSNEIQRRLHYFSQVELLNQRLQSPTLSVASEA 210
Query: 208 FFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQAA 267
F L ++DEC+ Y+E NP++ +++ Y +K+RQ ++A G++R++V SV+ A+ A
Sbjct: 211 FRECLNKIDECLNYIEENPKFKDAATYNVKYRQCLAKASGLVRNYVTSVINQATE----A 266
Query: 268 IRSSGGSKTSVSEGVEA-----SLIYVRFKAAASELKPVLEEIESR-SSKKEYVQILEEC 321
S T S ++A +L Y +++ AA+++K V++ IE+R +Y Q++ +
Sbjct: 267 TLHPKNSATDSSSALQAPDAAFALYYGKYQTAAAKVKRVVQLIETRLEHSNDYTQLMTDL 326
Query: 322 HKLYCEQRLSLVKGIVQQRISEF--SKKETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSS 379
+ Y QR S++ V I + K SLTRS C +L+ VCQ E +LF FF +
Sbjct: 327 QQHYLAQRASVMSPAVNLSIQNVKTAHKGDHCSLTRSACGFLVHVCQDEQRLFYQFFSTG 386
Query: 380 SEDISSLAPLIDPLSTFLYDILRPKLIHETNVDLLCELVDILKVEVLGEQLSRRSESLAG 439
+ L ++ L T LYD LRP +IH +++ L E+ IL++E+L E + + +L
Sbjct: 387 A---PHLTVYLEGLCTILYDTLRPFIIHINHLETLAEICSILRIEMLEEHVQQNPSALEA 443
Query: 440 LRPTLERILADVHERLTFRARTHIRDEIANYIPSDEDLNYPSKLE--------------- 484
++L DV ERL FRA +++ +I N+ PS DL YP KLE
Sbjct: 444 FATIAHQLLQDVQERLVFRAHLYLQSDIQNFNPSSGDLAYPEKLEMMESIALSLQEPTPL 503
Query: 485 ----------QSAGTKLETTPADEN---------PDVYKTWYPPLEKTVSCLSKLYQCLE 525
S + LET D + D++ WYP + +T+ CLS+LY+C++
Sbjct: 504 RRSDSRASVISSVSSVLETESVDNSYRIKQMNSPADLHGMWYPTVRRTLVCLSRLYRCVD 563
Query: 526 QAVFTGLAQEAVEVCSESIQKASKLIAKRSTPMDGQLFLIKYLLILREQIAPFDIEFSVT 585
+ +F GL+QEA+++C +S+ A I TP+DG+LF IK+LLILREQIAPF ++F+V
Sbjct: 564 RPIFQGLSQEALKLCIQSVSYAGGKIGAAKTPIDGELFEIKHLLILREQIAPFRVDFTVK 623
Query: 586 HKELDFSHLLEHLRRILRGQASLFDWSRSTSLARTL---SPRVLESQIDAKKELEKSLKA 642
LDFS + +L+ + LF + +L L +P++ E +D++KE+++ LK
Sbjct: 624 ETSLDFSKVKTAAFGLLQKRKQLFSMGSNNALLEFLLEGTPQIKEHLLDSRKEVDRQLKT 683
Query: 643 TCEEFIMAVTKLVVDPMLSFVAKVTAV--KVALSSGNQNQNVDSLMAKPLKDQAFATPDK 700
CE++I +++ P+++F+ K ++ + A ++ + ++ + L+ +A+P +
Sbjct: 684 VCEKYIRDAVNMLIGPLITFLDKTQSLLAQAASTTASTPESSSPKASYVLRQSPWASPQQ 743
Query: 701 VAELVHKVNAAIQQELPPVMAKMKLYLQNPSTRTILFKPVKTNIVEAHIQVQSLLKAEYM 760
++ ++ + I+ +L + M+LYL N T I+F+P++ NI+++ ++++ LL
Sbjct: 744 ISSIIQETQRMIKAKLAVLQRAMQLYLSNRDTEFIIFRPIRNNIIQSFVKLEQLLTTNGY 803
Query: 761 PEEQSII 767
+ II
Sbjct: 804 STDDMII 810
>sp|Q54TT4|COG3_DICDI Conserved oligomeric Golgi complex subunit 3 OS=Dictyostelium
discoideum GN=cog3 PE=3 SV=1
Length = 925
Score = 375 bits (964), Expect = e-103, Method: Compositional matrix adjust.
Identities = 251/847 (29%), Positives = 434/847 (51%), Gaps = 110/847 (12%)
Query: 22 NFAST-WEQNAPLSEQQQAAIGSLFHVVAERPFPVNLAQEHVPG----QDNGLSVATKDH 76
NF T WE+ + LS QQ I +L E+P P ++ + ++N +
Sbjct: 20 NFDITGWEKKSKLSTQQYLLINNLNKSTQEKPLPQKYLEDKINNDIKKEENQQLQQQQQQ 79
Query: 77 SFGE-----SDAIEAVLVNTN---------QFYNWFTDLELAMKSETEEKYRHYVNTLMG 122
+ S IE + N N FY W++ ++ + +Y ++ T++
Sbjct: 80 QQQQQQQQQSPIIENFMDNFNPKTDIDNLSDFYQWYSIID--KNNPHLHQYEWFLETIVN 137
Query: 123 RIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSK 182
+ + +L V+ L +Q + + KT L++ C++ E+ +L A+++ K
Sbjct: 138 YSKGSNQLLSMVENCDKLVESIQTDYSNLTKKTNQLNEDCEKFFNEELKLRYIAQSIHDK 197
Query: 183 LKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQ 242
LK++++LE F + N NV + F L+ L+ I +++ N + ES+ YL ++ +
Sbjct: 198 LKFYNQLEIQTKKFNTTNFNVTDSTFLTSLENLENSINFMKSNSTFMESNKYLTQYGFIF 257
Query: 243 SRALGMIRSHVLSVLK-------SASSQVQAAIR---------SSGGSK--TSVSEGVEA 284
SRALG+I+ ++ S LK +A Q++ ++ SSGGS S +
Sbjct: 258 SRALGLIKDYISSNLKILSRDIINAQKQLKTSVSTPTSPQLQSSSGGSPLINDFSNSTDF 317
Query: 285 SLIY----VRFKAAASELKPVLEEIESRSSKKEYVQILEECHKLYCEQRLSLVKGIVQQR 340
+ ++ +RF+A A +L+P+ E+E R+ Y+ L + +Y R S++ I+ ++
Sbjct: 318 NDLFQHSNIRFRAFAPKLRPLCLELEKRAIGP-YLSYLYDTQNIYFNNRRSILSLIMFEK 376
Query: 341 ISEFSKKETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSSSEDIS---------------- 384
+ SK + S+ RS +++Q + E+Q++ +FF S D++
Sbjct: 377 LQSLSKMTDISSMIRSSSLFMIQFYENEYQIYSNFF--SPPDLNNNNNNNNNNNNNDNIN 434
Query: 385 -----------------------SLAPLIDPLSTFLYDILRPKLIHETNVDLLCELVDIL 421
+ + ++D S LYD +RP IH + + LC L ++
Sbjct: 435 NSTNINNSNNTNNNNQDIINNCPAFSNILDEYSQQLYDTIRPIYIHIHSFETLCNLAHLI 494
Query: 422 KVEVLGEQLSRRSESLAGLRPTLERILADVHERLTFRARTHIRDEIANYIPSDEDLNYPS 481
+ E++ + + + + G + T+ER+L D+ ERL F +T+IRDEI +Y P+ +DL+YP+
Sbjct: 495 RNELIDDLVQKSMKYSNGFKMTIERMLQDIQERLIFIIQTYIRDEIRSYHPNSDDLDYPN 554
Query: 482 KLEQSAGTKLETTPADEN-----------PDVYKTWYPPLEKTVSCLSKLYQCLEQAVFT 530
KL+ + D N +Y TWYP LEK+++CLSKLY LE +F
Sbjct: 555 KLKIYVTAESTAVDGDGNGSGNSSPTLSYKSIYSTWYPTLEKSLTCLSKLYLVLETRIFE 614
Query: 531 GLAQEAVEVCSESIQKASK--LIAKRSTP---MDGQLFLIKYLLILREQIAPFDIEFSVT 585
GLAQE VE C+ ++ +AS+ LI +++ P +D QLFLIK LL LREQIAPFDI F +
Sbjct: 615 GLAQEVVEACTFTLIQASRLLLIQQKNDPYIILDSQLFLIKNLLTLREQIAPFDINFVII 674
Query: 586 HKELDFSHLLEHLRRILRGQASLFDWSRSTSLARTLSPRVLESQIDAKKELEKSLKATCE 645
K +DF + L+H L S S + + LSPRV + ID+KK+LEK LK + E
Sbjct: 675 EKIVDFPN-LKHSLSTLYNVGSFLTLSTNNPILSLLSPRVTNTSIDSKKDLEKELKQSIE 733
Query: 646 EFIMAVTKLVVDPMLSFVAKVTAVKVALSSGNQNQNVDSLMAKPLKDQAFATPDKVAELV 705
FI++ ++DP+LS + K++ V L+ N+NQ L+++ Q+FA P ++ E++
Sbjct: 734 SFILSNANTIIDPLLSLLTKIS---VFLNQSNKNQTDPMLLSQ----QSFADPQRIKEII 786
Query: 706 HKVNAAIQQELPPVMAKMKLYLQNPSTRTILFKPVKTNIVEAHIQVQSLLKAEYMPEEQS 765
+V LP V+ +MKLYL + ST+ +L KP++TNI+++ Q+ K Y ++
Sbjct: 787 EQVKEKASNYLPQVIDRMKLYL-SISTQILLMKPIRTNIIDSFDQINQYTKKYYTEDQIK 845
Query: 766 IINMVSM 772
II++ S+
Sbjct: 846 IIDLQSL 852
>sp|P40094|COG3_YEAST Conserved oligomeric Golgi complex subunit 3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=COG3 PE=1
SV=1
Length = 801
Score = 166 bits (421), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 152/597 (25%), Positives = 267/597 (44%), Gaps = 81/597 (13%)
Query: 133 QVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQ-RLIEFAEAVQSKLKYFDELEN 191
Q+D ++ F ++ A +TKT++ EKQ +L E++ L YF+ L+
Sbjct: 110 QLDSSIKKFRKISQDTGAFIEETKTIY--------EKQSKLSNLTESIPKALHYFEVLDP 161
Query: 192 IAASF---YSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGM 248
I SP + V +F +L +DE + +++ N +++ Y +KF+Q RA +
Sbjct: 162 IMRRLNHATSPAI-VKKSSFTTMLATIDESLRFLDENSDLKDAAAYRIKFKQCLIRACEL 220
Query: 249 IRSHVLSVLKSASSQVQAAIRSSGGSKTSVSEGVEASLIYVRFKAAASELKPVLEEIESR 308
I SH L+ L ++Q + S T + + +Y +F A K + EI R
Sbjct: 221 I-SHFLTNLLKQTNQEILDKTKNKNSLTGLPSTTRDAFLYSKFYTIADTFKIQVSEIVKR 279
Query: 309 SSKKEYVQ-------ILEECHKLYCEQRLSLVKGIVQQRISEF---SKKETLPSLTRSGC 358
S++K Y + IL EC Y + RL L+ ++ I E K + L + G
Sbjct: 280 SNEKAYNKYHDELNSILYECFNHYFQTRLRLLTPVIWSHIDEIVVKDKDQGLVKFIQDGK 339
Query: 359 AYLMQVCQLEHQLFDHFFPSSSEDISSLAPLIDPLSTFLYDILRPKLIHETNVDLLCELV 418
Y Q+C E++LF FFP E + L LYD +R +++ ET++ LC+ V
Sbjct: 340 VYFQQLCADEYKLFVEFFP-EKECRFKINQWFLQLCEPLYDSIRVRVLKETDICTLCDSV 398
Query: 419 DIL----KVEVLGEQLSRRSESLAGLRPTLERILADVHERLTFRARTHIRDEIANYIPSD 474
+ + E E+ ++ + E I+ V RL R + +++ I +Y P+
Sbjct: 399 TLFAPYYEFEEGSEEYVKQFTDIQ-YDKLFEPIVQKVQARLILRVQIYVQQNILSYRPTR 457
Query: 475 EDLNYPSKLEQSA----GTKLETTPADENPD----------------------------- 501
+ ++ +S G + T +D+NPD
Sbjct: 458 DVFMISNRRRKSKTSLQGGNEDATTSDDNPDPLLESYLSSFKNRSILPISPNDADDKSID 517
Query: 502 ---------VYKTWYPPLEKTVSCLSKLYQCLEQAVFTGLAQEAVEVCSESIQKASKLIA 552
+T+YPPL KT++ LSK+Y+ + VF LA V C S++ A ++
Sbjct: 518 SEESTDKISQLQTYYPPLLKTLALLSKIYEMINSVVFDDLAHHVVHDCIVSLRNAYDMVI 577
Query: 553 KRS------TPMDGQLFLIKYLLILREQIAPFDIEFSVTHKELDFSHLLEHLRRILRGQA 606
K S +D L +K LL+LR+ I F+I+++V LDFS + + +
Sbjct: 578 KSSAGKSDFNNLDISLAYLKNLLMLRDSIQNFNIQYTVNETYLDFSGVEGFFKSLKENGR 637
Query: 607 SLFDWSRSTS---LARTLSPRVLESQIDAKKELEKSLKATCEEFIMAVTKLVVDPML 660
++ ++S+S LAR L P+V+ + +DA+ EL L+ ++F + + ++D L
Sbjct: 638 NVLKKTKSSSILTLARELVPKVVNNMVDARTELISELRNVIKDFTESTSLELIDDTL 694
>sp|Q9Y7Z4|COG3_SCHPO Conserved oligomeric Golgi complex subunit 3 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=cog3 PE=3 SV=1
Length = 735
Score = 156 bits (394), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 131/551 (23%), Positives = 247/551 (44%), Gaps = 41/551 (7%)
Query: 117 VNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFA 176
+N L D IL Q + ++ + + K + C+ L ++ R E A
Sbjct: 105 INELQTFTNIIDQILGQTNNIESTLLSMKEKFESSEKKLSEFSEMCENLSTDEMRFSEIA 164
Query: 177 EAVQSKLKYFDELENIAASFYSPNMNV-GNGNFFHLLKRLDECILYVEGNPQYAESSVYL 235
+ ++ L F L+ + F P + G +F + +L+ CI+++E N + ES YL
Sbjct: 165 DGIRKGLTIFAPLKELTRVFRHPPPDFAGKVSFKEHITQLNTCIMFLEENLDFQESPHYL 224
Query: 236 LKFRQLQSRALGMIRSHVLSVLKSASSQVQAAIRSSGGSKTSVSEGVEASLIYVRFKAAA 295
++++L S+A+ + + + + ++K + QV K V + + +SL Y RF A
Sbjct: 225 GQYKKLLSQAMDIFKPYFIRIIKQTTDQVL-----KDSKKMDVHKQLHSSLFYARFSAVG 279
Query: 296 SELKPVLEEIESRSSKKEYVQILEECHKLYCEQRLSLVKGIVQQRISEFSKKETLPSLTR 355
L P + E+ SK+ L + +Y + R L+K ++ + F ++++ S +
Sbjct: 280 HNLCPTITELCKLCSKESLDAFLPAFYDVYFQCRTRLLKPVLDYHLKSFFMEKSISSYIQ 339
Query: 356 SGCAYLMQVCQLEHQLFDHFFPSSSEDISSLAPLIDPLSTFLYDILRPKLIHETNVDLLC 415
A L E++LF D + L ++ R ++HE N+ LC
Sbjct: 340 KSLALLQLTFFDENKLFREILIM---DDFRFMHYWNNLCQSFFENSRSLILHEKNLTELC 396
Query: 416 ELVDILK----VEVLGEQLSRRSESLAGLRPTLERILADVHERLTFRARTHIRDEIANYI 471
E+ ++ + GE+ + + L P ++ ++ ERL F +T I +I Y
Sbjct: 397 EVCSYIQSFQNAILEGEREDVDKKVVEFLNP----LVLELQERLLFVVQTAIETDIQRYS 452
Query: 472 PSDEDLNYPSKLEQSAGTKLETTPADEN-----PDV------YKTWYPPLEKTVSCLSKL 520
P++EDLN P ++S LE + + PDV + WYP ++K++ LSK+
Sbjct: 453 PTEEDLN-PIADDKSLLFDLEKLRLNNDEEKLDPDVPQKLAMAQGWYPVVQKSLIILSKI 511
Query: 521 YQCLEQAVFTGLAQEAVEVCSESIQKASKLIAKRSTPMDGQLFLIKYLLILREQIAPFDI 580
Y+ + VF +A E V C S+ A + ++ + +LFLIK L+L++Q+ FDI
Sbjct: 512 YRLVNSQVFDEIALELVHSCIRSLVDAYRYFSRNNDKQLARLFLIKNFLVLKDQLNSFDI 571
Query: 581 EFSVTHKELDFSHLLEHLRRI---LRGQASLFDWSRSTSLARTLSPRVLESQIDAKKELE 637
++ +D + + +R LRG L P+ + + +D ++EL
Sbjct: 572 HYACIEAGVDLRKVWDSVREWRSNLRG---------VLQLVYETFPKFITNAVDTRQELN 622
Query: 638 KSLKATCEEFI 648
+ L+ +I
Sbjct: 623 QQLRVAVNGYI 633
>sp|B0SLC8|ATPB_LEPBP ATP synthase subunit beta OS=Leptospira biflexa serovar Patoc
(strain Patoc 1 / ATCC 23582 / Paris) GN=atpD PE=3 SV=1
Length = 468
Score = 37.4 bits (85), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 408 ETNVDLLCELVDILKVEVLGEQLS---RRSESLAGLRPTLERILADVHERLTFRARTHIR 464
E+ D+L + +I + G ++S R S G +PTL + + ER+T R I
Sbjct: 239 ESGSDILLFVDNIFRFSQAGSEVSALLGRMPSAVGYQPTLSTEMGGLQERITSTTRGSIT 298
Query: 465 DEIANYIPSDEDLNYPSKLEQSAGTKLETTPADENPDVYKTWYP---PLEKTVSCLS 518
A Y+P+D DL P+ +A T L+ T K YP PL+ T ++
Sbjct: 299 SVQAIYVPAD-DLTDPAP--ATAFTHLDATTVLSRAISEKGIYPAVDPLDSTSRIMN 352
>sp|B0SDA5|ATPB_LEPBA ATP synthase subunit beta OS=Leptospira biflexa serovar Patoc
(strain Patoc 1 / Ames) GN=atpD PE=3 SV=1
Length = 468
Score = 37.4 bits (85), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 408 ETNVDLLCELVDILKVEVLGEQLS---RRSESLAGLRPTLERILADVHERLTFRARTHIR 464
E+ D+L + +I + G ++S R S G +PTL + + ER+T R I
Sbjct: 239 ESGSDILLFVDNIFRFSQAGSEVSALLGRMPSAVGYQPTLSTEMGGLQERITSTTRGSIT 298
Query: 465 DEIANYIPSDEDLNYPSKLEQSAGTKLETTPADENPDVYKTWYP---PLEKTVSCLS 518
A Y+P+D DL P+ +A T L+ T K YP PL+ T ++
Sbjct: 299 SVQAIYVPAD-DLTDPAP--ATAFTHLDATTVLSRAISEKGIYPAVDPLDSTSRIMN 352
>sp|A6QB59|ATPB_SULNB ATP synthase subunit beta OS=Sulfurovum sp. (strain NBC37-1)
GN=atpD PE=3 SV=1
Length = 466
Score = 36.2 bits (82), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 9/116 (7%)
Query: 408 ETNVDLLCELVDILKVEVLGEQLS---RRSESLAGLRPTLERILADVHERLTFRARTHIR 464
E +D+L + +I + G ++S R S G +PTL R + + ER+T + I
Sbjct: 236 EMGLDVLMFIDNIFRFAQSGSEMSALLGRIPSAVGYQPTLSREMGALQERITSTTKGSIT 295
Query: 465 DEIANYIPSDEDLNYPSKLEQSAGTKLETTPADENPDVYKTWYP---PLEKTVSCL 517
A Y+P+D DL P+ S L+ T K YP PL+ T L
Sbjct: 296 SVQAVYVPAD-DLTDPAP--ASVFAHLDATTVLNRSIAEKGIYPAVDPLDSTSRML 348
>sp|A8EV70|ATPB_ARCB4 ATP synthase subunit beta OS=Arcobacter butzleri (strain RM4018)
GN=atpD PE=3 SV=1
Length = 464
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 9/117 (7%)
Query: 408 ETNVDLLCELVDILKVEVLGEQLS---RRSESLAGLRPTLERILADVHERLTFRARTHIR 464
E +D+L + +I + G ++S R S G +PTL + + ER+T ++ I
Sbjct: 236 EKGLDVLMFIDNIFRFAQSGSEMSALLGRIPSAVGYQPTLASEMGKLQERITSTSKGSIT 295
Query: 465 DEIANYIPSDEDLNYPSKLEQSAGTKLETTPADENPDVYKTWYP---PLEKTVSCLS 518
A Y+P+D DL P+ S L+ T K YP PL+ T LS
Sbjct: 296 SVQAVYVPAD-DLTDPAP--ASVFAHLDATTVLNRKIAEKGIYPAVDPLDSTSRILS 349
>sp|Q6F202|ATPB_MESFL ATP synthase subunit beta OS=Mesoplasma florum (strain ATCC 33453 /
NBRC 100688 / NCTC 11704 / L1) GN=atpD PE=3 SV=1
Length = 479
Score = 35.8 bits (81), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 408 ETNVDLLCELVDILKVEVLGEQLS---RRSESLAGLRPTLERILADVHERLTFRARTHIR 464
E N+D+L + +I + G ++S R S G +PTL + + ER+T + I
Sbjct: 246 EKNMDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTNKGSIT 305
Query: 465 DEIANYIPSDEDLNYPS 481
A Y+P+D DL P+
Sbjct: 306 SVQAVYVPAD-DLTDPA 321
>sp|Q19V65|ATPB_CHLAT ATP synthase subunit beta, chloroplastic OS=Chlorokybus
atmophyticus GN=atpB PE=3 SV=2
Length = 485
Score = 35.4 bits (80), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 9/114 (7%)
Query: 410 NVDLLCELVDILKVEVLGEQLS---RRSESLAGLRPTLERILADVHERLTFRARTHIRDE 466
N D+L + +I + G ++S R S G +PTL R + + ER+T + I
Sbjct: 257 NQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSREMGTLQERITSTKKGSITSI 316
Query: 467 IANYIPSDEDLNYPSKLEQSAGTKLETTPADENPDVYKTWYP---PLEKTVSCL 517
A Y+P+D DL P+ A L+ T K YP PL+ T + L
Sbjct: 317 QAVYVPAD-DLTDPAPATTFA--HLDATTVLSRGLAAKGIYPAVDPLDSTSTML 367
>sp|P49647|ATPB_ODOSI ATP synthase subunit beta, chloroplastic OS=Odontella sinensis
GN=atpB PE=3 SV=1
Length = 475
Score = 35.4 bits (80), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 10/142 (7%)
Query: 412 DLLCELVDILKVEVLGEQLS---RRSESLAGLRPTLERILADVHERLTFRARTHIRDEIA 468
D+L + +I + G ++S R S G +PTL + + ER+T + I A
Sbjct: 251 DVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGALQERITSTTQGSITSIQA 310
Query: 469 NYIPSDEDLNYPSKLEQSAGTKLETTPADENPDVYKTWYPPLEKTVSCLSKLYQCLEQAV 528
Y+P+D DL P+ A L+ T K YP V L L+ +
Sbjct: 311 VYVPAD-DLTDPAPATTFA--HLDATTVLSRNLAAKGIYP----AVDPLDSTSTMLQPGI 363
Query: 529 FTGLAQEAVEVCSESIQKASKL 550
+G E E E++Q+ +L
Sbjct: 364 VSGEHYEIAETVKETLQRYKEL 385
>sp|B5YI24|ATPB_THEYD ATP synthase subunit beta OS=Thermodesulfovibrio yellowstonii
(strain ATCC 51303 / DSM 11347 / YP87) GN=atpD PE=3 SV=1
Length = 473
Score = 35.0 bits (79), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 412 DLLCELVDILKVEVLGEQLS---RRSESLAGLRPTLERILADVHERLTFRARTHIRDEIA 468
D+L + +I + + G ++S R S G +PTL + + ER+T A+ I A
Sbjct: 244 DVLIFIDNIFRYTLAGSEVSALLGRMPSAVGYQPTLSTEMGALQERITTTAKGSITSMQA 303
Query: 469 NYIPSDEDLNYPS 481
Y+P+D DL P+
Sbjct: 304 IYVPAD-DLTDPA 315
>sp|Q9MUT5|ATPB_MESVI ATP synthase subunit beta, chloroplastic OS=Mesostigma viride
GN=atpB PE=3 SV=1
Length = 481
Score = 35.0 bits (79), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 9/114 (7%)
Query: 410 NVDLLCELVDILKVEVLGEQLS---RRSESLAGLRPTLERILADVHERLTFRARTHIRDE 466
N D+L + +I + G ++S R S G +PTL R + + ER+T + I
Sbjct: 254 NQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSREMGTLQERITSTKQGSITSI 313
Query: 467 IANYIPSDEDLNYPSKLEQSAGTKLETTPADENPDVYKTWYP---PLEKTVSCL 517
A Y+P+D DL P+ A L+ T K YP PL+ T + L
Sbjct: 314 QAVYVPAD-DLTDPAPATTFA--HLDATTVLSRNLAAKGIYPAVDPLDSTSTML 364
>sp|O47037|ATPB_PICAB ATP synthase subunit beta, chloroplastic OS=Picea abies GN=atpB
PE=3 SV=1
Length = 488
Score = 35.0 bits (79), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
Query: 412 DLLCELVDILKVEVLGEQLS---RRSESLAGLRPTLERILADVHERLTFRARTHIRDEIA 468
D+L + +I + G ++S R S G +PTL + + ER+T R I A
Sbjct: 265 DVLSFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGSLQERITSTKRGSITSIQA 324
Query: 469 NYIPSDEDLNYPSKLEQSAGTKLETTPADENPDVYKTWYP---PLEKTVSCL 517
Y+P+D DL P+ A L+ T K YP PL+ T + L
Sbjct: 325 VYVPAD-DLTDPAPATTFA--HLDATTVPSRGLAAKGIYPAVDPLDSTSTML 373
>sp|Q313W0|ATPB_DESDG ATP synthase subunit beta OS=Desulfovibrio desulfuricans (strain
G20) GN=atpD PE=3 SV=1
Length = 470
Score = 34.7 bits (78), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 408 ETNVDLLCELVDILKVEVLGEQLS---RRSESLAGLRPTLERILADVHERLTFRARTHIR 464
E N D+L + +I + G ++S R S G +PTL L + ER+T + I
Sbjct: 239 EENQDVLLFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLGTDLGGLQERITSTTKGSIT 298
Query: 465 DEIANYIPSDEDLNYPS 481
A Y+P+D DL P+
Sbjct: 299 SVQAVYVPAD-DLTDPA 314
>sp|A8HS10|ATPB_AZOC5 ATP synthase subunit beta OS=Azorhizobium caulinodans (strain ATCC
43989 / DSM 5975 / ORS 571) GN=atpD PE=3 SV=1
Length = 478
Score = 34.7 bits (78), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 9/115 (7%)
Query: 412 DLLCELVDILKVEVLGEQLS---RRSESLAGLRPTLERILADVHERLTFRARTHIRDEIA 468
D+L + +I + G ++S R S G +PTL + + ER+T + I A
Sbjct: 250 DVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTTTKGSITSVQA 309
Query: 469 NYIPSDEDLNYPSKLEQSAGTKLETTPADENPDVYKTWYP---PLEKTVSCLSKL 520
Y+P+D DL P+ A L+ T K YP PL+ T LS L
Sbjct: 310 IYVPAD-DLTDPAPAASFA--HLDATTVLSRSIAEKGIYPAVDPLDSTSRILSPL 361
>sp|B3EA01|ATPB_GEOLS ATP synthase subunit beta OS=Geobacter lovleyi (strain ATCC
BAA-1151 / DSM 17278 / SZ) GN=atpD PE=3 SV=1
Length = 471
Score = 34.7 bits (78), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 408 ETNVDLLCELVDILKVEVLGEQLS---RRSESLAGLRPTLERILADVHERLTFRARTHIR 464
E N D+L + +I + G ++S R S G +PTL + ++ ER+T + I
Sbjct: 241 EENQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGELQERITSTKKGSIT 300
Query: 465 DEIANYIPSDEDLNYPS 481
A Y+P+D DL P+
Sbjct: 301 SVQAIYVPAD-DLTDPA 316
>sp|A6WXX1|ATPB_OCHA4 ATP synthase subunit beta OS=Ochrobactrum anthropi (strain ATCC
49188 / DSM 6882 / NCTC 12168) GN=atpD PE=3 SV=1
Length = 517
Score = 34.7 bits (78), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 9/115 (7%)
Query: 412 DLLCELVDILKVEVLGEQLS---RRSESLAGLRPTLERILADVHERLTFRARTHIRDEIA 468
D+L + +I + G +LS R S G +PTL + + ER+T + I A
Sbjct: 289 DVLFFVDNIFRFTQAGSELSALLGRIPSAVGYQPTLATDMGAMQERITTTTKGSITSVQA 348
Query: 469 NYIPSDEDLNYPSKLEQSAGTKLETTPADENPDVYKTWYP---PLEKTVSCLSKL 520
Y+P+D DL P+ A L+ T K YP PLE T L +
Sbjct: 349 IYVPAD-DLTDPAPATSFA--HLDATTTLNRSIAEKGIYPAVDPLESTSRMLDPM 400
>sp|A4YKE0|ATPB_BRASO ATP synthase subunit beta OS=Bradyrhizobium sp. (strain ORS278)
GN=atpD PE=3 SV=1
Length = 480
Score = 34.3 bits (77), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 9/115 (7%)
Query: 412 DLLCELVDILKVEVLGEQLS---RRSESLAGLRPTLERILADVHERLTFRARTHIRDEIA 468
D+L + +I + G ++S R S G +PTL + + ER+T + I A
Sbjct: 252 DVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTTTKGSITSVQA 311
Query: 469 NYIPSDEDLNYPSKLEQSAGTKLETTPADENPDVYKTWYP---PLEKTVSCLSKL 520
Y+P+D DL P+ A L+ T K YP PL+ T LS L
Sbjct: 312 IYVPAD-DLTDPAPATSFA--HLDATTTLSRSIAEKGIYPAVDPLDSTSRMLSPL 363
>sp|A5E950|ATPB1_BRASB ATP synthase subunit beta 1 OS=Bradyrhizobium sp. (strain BTAi1 /
ATCC BAA-1182) GN=atpD1 PE=3 SV=1
Length = 480
Score = 34.3 bits (77), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 9/115 (7%)
Query: 412 DLLCELVDILKVEVLGEQLS---RRSESLAGLRPTLERILADVHERLTFRARTHIRDEIA 468
D+L + +I + G ++S R S G +PTL + + ER+T + I A
Sbjct: 252 DVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTTTKGSITSVQA 311
Query: 469 NYIPSDEDLNYPSKLEQSAGTKLETTPADENPDVYKTWYP---PLEKTVSCLSKL 520
Y+P+D DL P+ A L+ T K YP PL+ T LS L
Sbjct: 312 IYVPAD-DLTDPAPATSFA--HLDATTTLSRSIAEKGIYPAVDPLDSTSRMLSPL 363
>sp|Q4AAV7|ATPB_MYCHJ ATP synthase subunit beta OS=Mycoplasma hyopneumoniae (strain J /
ATCC 25934 / NCTC 10110) GN=atpD PE=3 SV=1
Length = 471
Score = 34.3 bits (77), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 410 NVDLLCELVDILKVEVLGEQLSR---RSESLAGLRPTLERILADVHERLTFRARTHIRDE 466
N D+L + +I + G ++S R S G +PTL + + ER+T R I
Sbjct: 240 NQDVLLFIDNIFRFTQAGSEVSTLLGRIPSTVGYQPTLSTEMGQLQERITSTIRGSITSV 299
Query: 467 IANYIPSDEDLNYPS 481
A Y+P+D D+ P+
Sbjct: 300 QAVYVPAD-DITDPA 313
>sp|Q4A8V9|ATPB_MYCH7 ATP synthase subunit beta OS=Mycoplasma hyopneumoniae (strain 7448)
GN=atpD PE=3 SV=1
Length = 471
Score = 34.3 bits (77), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 410 NVDLLCELVDILKVEVLGEQLSR---RSESLAGLRPTLERILADVHERLTFRARTHIRDE 466
N D+L + +I + G ++S R S G +PTL + + ER+T R I
Sbjct: 240 NQDVLLFIDNIFRFTQAGSEVSTLLGRIPSTVGYQPTLSTEMGQLQERITSTIRGSITSV 299
Query: 467 IANYIPSDEDLNYPS 481
A Y+P+D D+ P+
Sbjct: 300 QAVYVPAD-DITDPA 313
>sp|Q601Z5|ATPB_MYCH2 ATP synthase subunit beta OS=Mycoplasma hyopneumoniae (strain 232)
GN=atpD PE=3 SV=1
Length = 471
Score = 34.3 bits (77), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 410 NVDLLCELVDILKVEVLGEQLSR---RSESLAGLRPTLERILADVHERLTFRARTHIRDE 466
N D+L + +I + G ++S R S G +PTL + + ER+T R I
Sbjct: 240 NQDVLLFIDNIFRFTQAGSEVSTLLGRIPSTVGYQPTLSTEMGQLQERITSTIRGSITSV 299
Query: 467 IANYIPSDEDLNYPS 481
A Y+P+D D+ P+
Sbjct: 300 QAVYVPAD-DITDPA 313
>sp|Q042L5|ATPB_LACGA ATP synthase subunit beta OS=Lactobacillus gasseri (strain ATCC
33323 / DSM 20243) GN=atpD PE=3 SV=1
Length = 480
Score = 34.3 bits (77), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 9/114 (7%)
Query: 410 NVDLLCELVDILKVEVLGEQLS---RRSESLAGLRPTLERILADVHERLTFRARTHIRDE 466
+D+L + +I + G ++S R S G +PTL + + ER+T + I
Sbjct: 239 GLDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSITSI 298
Query: 467 IANYIPSDEDLNYPSKLEQSAGTKLETTPADENPDVYKTWYP---PLEKTVSCL 517
A Y+P+D +Y + L+ T E V + YP PLE T S L
Sbjct: 299 QAVYVPAD---DYTDPAPATTFAHLDATTNLERRLVEQGIYPAVDPLESTSSAL 349
>sp|B6JD09|ATPB_OLICO ATP synthase subunit beta OS=Oligotropha carboxidovorans (strain
ATCC 49405 / DSM 1227 / OM5) GN=atpD PE=3 SV=1
Length = 476
Score = 34.3 bits (77), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 9/115 (7%)
Query: 412 DLLCELVDILKVEVLGEQLS---RRSESLAGLRPTLERILADVHERLTFRARTHIRDEIA 468
D+L + +I + G ++S R S G +PTL + + ER+T + I A
Sbjct: 248 DVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTTTKGSITSVQA 307
Query: 469 NYIPSDEDLNYPSKLEQSAGTKLETTPADENPDVYKTWYP---PLEKTVSCLSKL 520
Y+P+D DL P+ A L+ T K YP PL+ T LS L
Sbjct: 308 IYVPAD-DLTDPAPATSFA--HLDATTVLNRAISEKGIYPAVDPLDSTSRMLSPL 359
>sp|Q74K15|ATPB_LACJO ATP synthase subunit beta OS=Lactobacillus johnsonii (strain CNCM
I-12250 / La1 / NCC 533) GN=atpD PE=3 SV=1
Length = 480
Score = 33.9 bits (76), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 9/114 (7%)
Query: 410 NVDLLCELVDILKVEVLGEQLS---RRSESLAGLRPTLERILADVHERLTFRARTHIRDE 466
+D+L + +I + G ++S R S G +PTL + + ER+T + I
Sbjct: 239 GLDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSITSI 298
Query: 467 IANYIPSDEDLNYPSKLEQSAGTKLETTPADENPDVYKTWYP---PLEKTVSCL 517
A Y+P+D +Y + L+ T E V + YP PLE T S L
Sbjct: 299 QAVYVPAD---DYTDPAPATTFAHLDATTNLERRLVEQGIYPAVDPLESTSSAL 349
>sp|P48081|ATPB_CYAPA ATP synthase subunit beta, cyanelle OS=Cyanophora paradoxa GN=atpB
PE=3 SV=1
Length = 485
Score = 33.9 bits (76), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 15/129 (11%)
Query: 410 NVDLLCELVDILKVEVLGEQLS---RRSESLAGLRPTLERILADVHERLTFRARTHIRDE 466
N D+L + +I + G ++S R S G +PTL + + ER+T + I
Sbjct: 255 NQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTEMGSLQERITSTTKGSITSI 314
Query: 467 IANYIPSDEDLNYPSKLEQSAGTKLETTPADENPDVYKTWYP---PLEKTVSCLS----- 518
A Y+P+D DL P+ A L+ T K YP PL+ T + L
Sbjct: 315 QAVYVPAD-DLTDPAPATTFA--HLDATTVLSRNLAAKGIYPAVDPLDSTSTMLQPGIVG 371
Query: 519 -KLYQCLEQ 526
K Y C ++
Sbjct: 372 EKHYACAQR 380
>sp|Q1GAW5|ATPB_LACDA ATP synthase subunit beta OS=Lactobacillus delbrueckii subsp.
bulgaricus (strain ATCC 11842 / DSM 20081) GN=atpD PE=3
SV=1
Length = 479
Score = 33.9 bits (76), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
Query: 412 DLLCELVDILKVEVLGEQLS---RRSESLAGLRPTLERILADVHERLTFRARTHIRDEIA 468
D+L + +I + G ++S R S G +PTL + + ER+T + I A
Sbjct: 241 DVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGQLQERITSTKKGSITSIQA 300
Query: 469 NYIPSDEDLNYPSKLEQSAGTKLETTPADENPDVYKTWYP---PLEKTVSCL 517
Y+P+D +Y + L+ T E V + YP PLE T S L
Sbjct: 301 VYVPAD---DYTDPAPATTFAYLDATTNLERSLVEQGIYPAVDPLESTSSAL 349
>sp|Q28TJ6|ATPB_JANSC ATP synthase subunit beta OS=Jannaschia sp. (strain CCS1) GN=atpD
PE=3 SV=1
Length = 474
Score = 33.9 bits (76), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 409 TNVDLLCELVDILKVEVLGEQLS---RRSESLAGLRPTLERILADVHERLTFRARTHIRD 465
T D+L + +I + G ++S R S G +PTL + + ER+T R I
Sbjct: 243 TGADVLFFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITSTKRGSITS 302
Query: 466 EIANYIPSDEDLNYPS 481
A Y+P+D DL P+
Sbjct: 303 IQAVYVPAD-DLTDPA 317
>sp|B8DRD2|ATPB_DESVM ATP synthase subunit beta OS=Desulfovibrio vulgaris (strain
Miyazaki F / DSM 19637) GN=atpD PE=3 SV=1
Length = 471
Score = 33.9 bits (76), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 410 NVDLLCELVDILKVEVLGEQLS---RRSESLAGLRPTLERILADVHERLTFRARTHIRDE 466
N D+L + +I + G ++S R S G +PTL L + ER+T + I
Sbjct: 242 NQDVLLFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLGTDLGGLQERITSTVKGSITSV 301
Query: 467 IANYIPSDEDLNYPS 481
A Y+P+D DL P+
Sbjct: 302 QAVYVPAD-DLTDPA 315
>sp|Q89X74|ATPB_BRAJA ATP synthase subunit beta OS=Bradyrhizobium japonicum (strain USDA
110) GN=atpD PE=3 SV=1
Length = 477
Score = 33.9 bits (76), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 9/115 (7%)
Query: 412 DLLCELVDILKVEVLGEQLS---RRSESLAGLRPTLERILADVHERLTFRARTHIRDEIA 468
D+L + +I + G ++S R S G +PTL + + ER+T + I A
Sbjct: 249 DVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTTQKGSITSVQA 308
Query: 469 NYIPSDEDLNYPSKLEQSAGTKLETTPADENPDVYKTWYP---PLEKTVSCLSKL 520
Y+P+D DL P+ A L+ T K YP PL+ T LS L
Sbjct: 309 IYVPAD-DLTDPAPATSFA--HLDATTTLSRSIAEKGIYPAVDPLDSTSRMLSPL 360
>sp|P35718|RPC8_YEAST DNA-directed RNA polymerase III subunit RPC8 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPC25 PE=1
SV=1
Length = 212
Score = 33.9 bits (76), Expect = 5.7, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 446 RILADVHERLTFRARTHIRDEIANYIPSDEDLNYPSKLEQSAGTKLETTPADENPDVY 503
++ DV+E++ FR + ++ P + +L ++LE K E TP +E P Y
Sbjct: 137 KLYFDVNEKIRFRIEREVFVDVKPKSPKERELEERAQLENEIEGKNEETPQNEKPPAY 194
>sp|Q04BA3|ATPB_LACDB ATP synthase subunit beta OS=Lactobacillus delbrueckii subsp.
bulgaricus (strain ATCC BAA-365) GN=atpD PE=3 SV=1
Length = 479
Score = 33.9 bits (76), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
Query: 412 DLLCELVDILKVEVLGEQLS---RRSESLAGLRPTLERILADVHERLTFRARTHIRDEIA 468
D+L + +I + G ++S R S G +PTL + + ER+T + I A
Sbjct: 241 DVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGQLQERITSTKKGSITSIQA 300
Query: 469 NYIPSDEDLNYPSKLEQSAGTKLETTPADENPDVYKTWYP---PLEKTVSCL 517
Y+P+D +Y + L+ T E V + YP PLE T S L
Sbjct: 301 VYVPAD---DYTDPAPATTFAYLDATTNLERSLVEQGIYPAVDPLESTSSAL 349
>sp|Q1QQS8|ATPB_NITHX ATP synthase subunit beta OS=Nitrobacter hamburgensis (strain X14 /
DSM 10229) GN=atpD PE=3 SV=1
Length = 476
Score = 33.5 bits (75), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 9/115 (7%)
Query: 412 DLLCELVDILKVEVLGEQLS---RRSESLAGLRPTLERILADVHERLTFRARTHIRDEIA 468
D+L + +I + G ++S R S G +PTL + + ER+T + I A
Sbjct: 248 DVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTTTKGSITSIQA 307
Query: 469 NYIPSDEDLNYPSKLEQSAGTKLETTPADENPDVYKTWYP---PLEKTVSCLSKL 520
Y+P+D DL P+ A L+ T K YP PL+ T LS L
Sbjct: 308 IYVPAD-DLTDPAPATSFA--HLDATTTLNRAISEKGIYPAVDPLDSTSRMLSPL 359
>sp|A0T0R6|ATPB_THAPS ATP synthase subunit beta, chloroplastic OS=Thalassiosira
pseudonana GN=atpB PE=3 SV=1
Length = 474
Score = 33.5 bits (75), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 10/142 (7%)
Query: 412 DLLCELVDILKVEVLGEQLS---RRSESLAGLRPTLERILADVHERLTFRARTHIRDEIA 468
D+L + +I + G ++S R S G +PTL + + ER+T + I A
Sbjct: 250 DVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGALQERITSTTQGSITSIQA 309
Query: 469 NYIPSDEDLNYPSKLEQSAGTKLETTPADENPDVYKTWYPPLEKTVSCLSKLYQCLEQAV 528
Y+P+D DL P+ A L+ T K YP V L L+ +
Sbjct: 310 VYVPAD-DLTDPAPATTFA--HLDATTVLSRNLAAKGIYP----AVDPLDSTSTMLQPGI 362
Query: 529 FTGLAQEAVEVCSESIQKASKL 550
+ + E E E++Q+ +L
Sbjct: 363 VSEVHYETAETVKETLQRYKEL 384
>sp|P42467|ATPB_PEPNI ATP synthase subunit beta (Fragment) OS=Peptococcus niger GN=atpD
PE=3 SV=1
Length = 427
Score = 33.5 bits (75), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 408 ETNVDLLCELVDILKVEVLGEQLS---RRSESLAGLRPTLERILADVHERLTFRARTHIR 464
E N D+L + +I + G ++S R S G +PTL + + ER+T + I
Sbjct: 244 EQNQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGTMQERITSTDKGSIT 303
Query: 465 DEIANYIPSDEDLNYPSKLEQSAGTKLETTPADENPDVYKTWYPPLEKTVSC 516
A Y+P+D DL P+ A L+ T E K YP ++ S
Sbjct: 304 SVQAVYVPAD-DLTDPAPATTFA--HLDATTVLERSISEKGIYPAVDPLAST 352
>sp|Q07UZ5|ATPB_RHOP5 ATP synthase subunit beta OS=Rhodopseudomonas palustris (strain
BisA53) GN=atpD PE=3 SV=1
Length = 476
Score = 33.5 bits (75), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 9/115 (7%)
Query: 412 DLLCELVDILKVEVLGEQLS---RRSESLAGLRPTLERILADVHERLTFRARTHIRDEIA 468
D+L + +I + G ++S R S G +PTL + + ER+T + I A
Sbjct: 248 DVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTTHKGSITSVQA 307
Query: 469 NYIPSDEDLNYPSKLEQSAGTKLETTPADENPDVYKTWYP---PLEKTVSCLSKL 520
Y+P+D DL P+ A L+ T K YP PL+ T LS L
Sbjct: 308 IYVPAD-DLTDPAPATSFA--HLDATTVLNRAISEKGIYPAVDPLDSTSRMLSPL 359
>sp|Q2J3I4|ATPB_RHOP2 ATP synthase subunit beta OS=Rhodopseudomonas palustris (strain
HaA2) GN=atpD PE=3 SV=1
Length = 476
Score = 33.5 bits (75), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 9/115 (7%)
Query: 412 DLLCELVDILKVEVLGEQLS---RRSESLAGLRPTLERILADVHERLTFRARTHIRDEIA 468
D+L + +I + G ++S R S G +PTL + + ER+T + I A
Sbjct: 248 DVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTTHKGSITSVQA 307
Query: 469 NYIPSDEDLNYPSKLEQSAGTKLETTPADENPDVYKTWYP---PLEKTVSCLSKL 520
Y+P+D DL P+ A L+ T K YP PL+ T LS L
Sbjct: 308 IYVPAD-DLTDPAPATSFA--HLDATTVLNRAISEKGIYPAVDPLDSTSRMLSPL 359
>sp|Q13DP2|ATPB_RHOPS ATP synthase subunit beta OS=Rhodopseudomonas palustris (strain
BisB5) GN=atpD PE=3 SV=1
Length = 476
Score = 33.5 bits (75), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 9/115 (7%)
Query: 412 DLLCELVDILKVEVLGEQLS---RRSESLAGLRPTLERILADVHERLTFRARTHIRDEIA 468
D+L + +I + G ++S R S G +PTL + + ER+T + I A
Sbjct: 248 DVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTTHKGSITSVQA 307
Query: 469 NYIPSDEDLNYPSKLEQSAGTKLETTPADENPDVYKTWYP---PLEKTVSCLSKL 520
Y+P+D DL P+ A L+ T K YP PL+ T LS L
Sbjct: 308 IYVPAD-DLTDPAPATSFA--HLDATTVLNRAISEKGIYPAVDPLDSTSRMLSPL 359
>sp|A8YUK1|ATPB_LACH4 ATP synthase subunit beta OS=Lactobacillus helveticus (strain DPC
4571) GN=atpD PE=3 SV=1
Length = 479
Score = 33.1 bits (74), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
Query: 412 DLLCELVDILKVEVLGEQLS---RRSESLAGLRPTLERILADVHERLTFRARTHIRDEIA 468
D+L + +I + G ++S R S G +PTL + + ER+T + I A
Sbjct: 241 DVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSITSIQA 300
Query: 469 NYIPSDEDLNYPSKLEQSAGTKLETTPADENPDVYKTWYP---PLEKTVSCL 517
Y+P+D +Y + L+ T E V + YP PLE + S L
Sbjct: 301 VYVPAD---DYTDPAPSTTFAHLDATTNLERSLVEQGIYPAVDPLESSSSAL 349
>sp|A9AJG4|ATPB_BURM1 ATP synthase subunit beta OS=Burkholderia multivorans (strain ATCC
17616 / 249) GN=atpD PE=3 SV=1
Length = 464
Score = 33.1 bits (74), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 404 KLIHETNVDLLCELVDILKVEVLGEQLS---RRSESLAGLRPTLERILADVHERLTFRAR 460
+ + +D+L + +I + + G ++S R S G +PTL + + ER+T +
Sbjct: 232 EFFRDEGLDVLFFVDNIYRFTLAGTEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTKK 291
Query: 461 THIRDEIANYIPSDEDLNYPS 481
I A Y+P+D DL PS
Sbjct: 292 GSITSVQAVYVPAD-DLTDPS 311
>sp|Q3SVJ1|ATPB_NITWN ATP synthase subunit beta OS=Nitrobacter winogradskyi (strain
Nb-255 / ATCC 25391) GN=atpD PE=3 SV=1
Length = 476
Score = 33.1 bits (74), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 9/115 (7%)
Query: 412 DLLCELVDILKVEVLGEQLS---RRSESLAGLRPTLERILADVHERLTFRARTHIRDEIA 468
D+L + +I + G ++S R S G +PTL + + ER+T + I A
Sbjct: 248 DVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTTNKGSITSVQA 307
Query: 469 NYIPSDEDLNYPSKLEQSAGTKLETTPADENPDVYKTWYP---PLEKTVSCLSKL 520
Y+P+D DL P+ A L+ T K YP PL+ T LS L
Sbjct: 308 IYVPAD-DLTDPAPATSFA--HLDATTVLNRAISEKGIYPAVDPLDSTSRMLSPL 359
>sp|B0U598|ATPB_XYLFM ATP synthase subunit beta OS=Xylella fastidiosa (strain M12)
GN=atpD PE=3 SV=1
Length = 466
Score = 33.1 bits (74), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 412 DLLCELVDILKVEVLGEQLS---RRSESLAGLRPTLERILADVHERLTFRARTHIRDEIA 468
D+L + +I + + G ++S R S G +PTL + + ER+T A I A
Sbjct: 241 DVLLFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTANGSITSIQA 300
Query: 469 NYIPSDEDLNYPS 481
Y+P+D DL PS
Sbjct: 301 VYVPAD-DLTDPS 312
>sp|Q9PE85|ATPB_XYLFA ATP synthase subunit beta OS=Xylella fastidiosa (strain 9a5c)
GN=atpD PE=3 SV=1
Length = 466
Score = 33.1 bits (74), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 412 DLLCELVDILKVEVLGEQLS---RRSESLAGLRPTLERILADVHERLTFRARTHIRDEIA 468
D+L + +I + + G ++S R S G +PTL + + ER+T A I A
Sbjct: 241 DVLLFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTANGSITSIQA 300
Query: 469 NYIPSDEDLNYPS 481
Y+P+D DL PS
Sbjct: 301 VYVPAD-DLTDPS 312
>sp|Q6MS94|ATPB_MYCMS ATP synthase subunit beta OS=Mycoplasma mycoides subsp. mycoides SC
(strain PG1) GN=atpD PE=3 SV=1
Length = 475
Score = 33.1 bits (74), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 408 ETNVDLLCELVDILKVEVLGEQLS---RRSESLAGLRPTLERILADVHERLTFRARTHIR 464
+ N+D+L + +I + G ++S R S G +PTL + + ER+T I
Sbjct: 245 QKNMDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKNGSIT 304
Query: 465 DEIANYIPSDEDLNYPS 481
A Y+P+D DL P+
Sbjct: 305 SVQAVYVPAD-DLTDPA 320
>sp|Q87E90|ATPB_XYLFT ATP synthase subunit beta OS=Xylella fastidiosa (strain Temecula1 /
ATCC 700964) GN=atpD PE=3 SV=1
Length = 466
Score = 33.1 bits (74), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 412 DLLCELVDILKVEVLGEQLS---RRSESLAGLRPTLERILADVHERLTFRARTHIRDEIA 468
D+L + +I + + G ++S R S G +PTL + + ER+T A I A
Sbjct: 241 DVLLFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTANGSITSIQA 300
Query: 469 NYIPSDEDLNYPS 481
Y+P+D DL PS
Sbjct: 301 VYVPAD-DLTDPS 312
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 261,117,257
Number of Sequences: 539616
Number of extensions: 10377416
Number of successful extensions: 31699
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 114
Number of HSP's that attempted gapping in prelim test: 31629
Number of HSP's gapped (non-prelim): 141
length of query: 783
length of database: 191,569,459
effective HSP length: 126
effective length of query: 657
effective length of database: 123,577,843
effective search space: 81190642851
effective search space used: 81190642851
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)