Query 003959
Match_columns 783
No_of_seqs 164 out of 213
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 15:02:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003959.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003959hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2604 Subunit of cis-Golgi t 100.0 3E-144 7E-149 1204.2 63.2 718 12-752 3-732 (733)
2 PF04136 Sec34: Sec34-like fam 100.0 1.9E-42 4.1E-47 339.3 19.0 155 112-266 1-155 (157)
3 PF06419 COG6: Conserved oligo 99.3 1E-06 2.2E-11 104.8 56.2 542 110-779 30-618 (618)
4 PF09763 Sec3_C: Exocyst compl 98.3 0.02 4.2E-07 69.8 51.6 119 631-761 574-701 (701)
5 KOG3758 Uncharacterized conser 97.8 0.14 3.1E-06 59.7 48.9 392 112-579 65-510 (655)
6 KOG2604 Subunit of cis-Golgi t 96.6 0.0061 1.3E-07 71.3 8.5 150 115-265 543-697 (733)
7 PF04129 Vps52: Vps52 / Sac2 f 96.5 2.9 6.2E-05 49.3 41.4 340 116-469 15-397 (508)
8 PF03081 Exo70: Exo70 exocyst 90.2 35 0.00077 38.1 21.9 75 699-782 293-371 (371)
9 KOG1961 Vacuolar sorting prote 87.4 71 0.0015 38.1 45.9 137 115-260 75-218 (683)
10 PF06008 Laminin_I: Laminin Do 83.8 66 0.0014 34.5 20.7 107 116-229 36-145 (264)
11 COG3883 Uncharacterized protei 80.1 50 0.0011 35.7 14.5 102 106-217 33-138 (265)
12 KOG0810 SNARE protein Syntaxin 80.0 1E+02 0.0022 34.0 17.4 180 126-327 41-224 (297)
13 PF13949 ALIX_LYPXL_bnd: ALIX 71.4 42 0.00092 36.2 11.8 103 91-197 176-282 (296)
14 cd08915 V_Alix_like Protein-in 68.4 56 0.0012 36.3 12.2 103 91-197 226-332 (342)
15 KOG1490 GTP-binding protein CR 56.6 46 0.001 39.0 8.6 96 124-219 89-195 (620)
16 PF04899 MbeD_MobD: MbeD/MobD 56.4 1.3E+02 0.0029 26.0 9.5 67 99-165 2-68 (70)
17 cd09234 V_HD-PTP_like Protein- 55.6 1.2E+02 0.0025 34.0 11.7 92 103-197 236-327 (337)
18 cd09237 V_ScBro1_like Protein- 53.6 87 0.0019 35.2 10.4 96 102-197 248-346 (356)
19 PF04048 Sec8_exocyst: Sec8 ex 53.3 2.2E+02 0.0048 27.6 12.7 66 91-163 42-107 (142)
20 PF04012 PspA_IM30: PspA/IM30 52.0 2.9E+02 0.0063 28.6 15.0 80 91-170 64-143 (221)
21 PF06248 Zw10: Centromere/kine 51.2 5.1E+02 0.011 31.2 18.4 140 90-234 8-152 (593)
22 PF00435 Spectrin: Spectrin re 50.5 1.6E+02 0.0036 25.2 11.0 59 90-151 9-67 (105)
23 PF04108 APG17: Autophagy prot 49.1 4.7E+02 0.01 30.1 22.3 94 161-254 193-304 (412)
24 cd09238 V_Alix_like_1 Protein- 47.3 1.2E+02 0.0027 33.8 10.2 88 106-197 242-329 (339)
25 PF10168 Nup88: Nuclear pore c 47.1 3.9E+02 0.0086 33.2 15.2 83 126-219 566-648 (717)
26 PF04108 APG17: Autophagy prot 45.4 5.3E+02 0.012 29.7 17.7 88 109-196 235-323 (412)
27 cd09236 V_AnPalA_UmRIM20_like 43.7 1.9E+02 0.0042 32.5 11.1 91 103-197 253-343 (353)
28 PF06103 DUF948: Bacterial pro 42.6 2.1E+02 0.0045 25.3 9.1 32 153-184 54-85 (90)
29 PF01031 Dynamin_M: Dynamin ce 42.4 4.8E+02 0.01 28.3 15.6 58 211-269 33-90 (295)
30 PF11554 DUF3232: Protein of u 42.3 1.2E+02 0.0027 29.7 7.8 86 218-322 8-99 (152)
31 PF08580 KAR9: Yeast cortical 40.7 1.6E+02 0.0035 36.2 10.5 102 86-222 33-146 (683)
32 KOG0804 Cytoplasmic Zn-finger 40.4 2.7E+02 0.0058 32.4 11.2 73 111-183 339-412 (493)
33 COG1084 Predicted GTPase [Gene 40.2 2E+02 0.0043 32.2 10.1 102 112-214 78-190 (346)
34 PF06148 COG2: COG (conserved 38.8 44 0.00095 32.0 4.4 104 86-193 26-130 (133)
35 PF08385 DHC_N1: Dynein heavy 38.8 7.2E+02 0.016 29.3 30.1 56 169-228 85-140 (579)
36 PRK09039 hypothetical protein; 38.4 6.2E+02 0.013 28.4 14.6 132 108-246 46-185 (343)
37 smart00150 SPEC Spectrin repea 36.4 2.7E+02 0.0059 23.7 10.6 91 90-183 6-100 (101)
38 PF10191 COG7: Golgi complex c 36.2 9.7E+02 0.021 30.0 36.0 170 207-423 148-324 (766)
39 PHA03386 P10 fibrous body prot 32.9 2E+02 0.0044 26.2 7.1 54 127-184 7-60 (94)
40 PF01865 PhoU_div: Protein of 32.3 5.6E+02 0.012 26.1 12.2 54 162-224 42-96 (214)
41 smart00503 SynN Syntaxin N-ter 31.9 3E+02 0.0064 25.0 8.7 58 126-183 9-66 (117)
42 PF07303 Occludin_ELL: Occludi 31.4 3.3E+02 0.0072 25.1 8.6 62 110-172 7-68 (101)
43 cd09235 V_Alix Middle V-domain 29.7 4.5E+02 0.0097 29.4 11.1 83 112-198 248-330 (339)
44 KOG2196 Nuclear porin [Nuclear 29.0 6.7E+02 0.015 26.9 11.3 77 95-183 81-157 (254)
45 PF05600 DUF773: Protein of un 28.8 4.9E+02 0.011 30.9 11.6 78 89-166 397-494 (507)
46 PF00015 MCPsignal: Methyl-acc 28.1 3.6E+02 0.0079 26.9 9.4 15 91-105 95-109 (213)
47 cd00179 SynN Syntaxin N-termin 27.9 5.4E+02 0.012 24.6 12.9 46 169-214 87-141 (151)
48 KOG1962 B-cell receptor-associ 27.9 2.2E+02 0.0048 30.0 7.6 58 120-177 153-210 (216)
49 cd08816 CARD_RIG-I_1 Caspase a 27.8 1.2E+02 0.0026 27.2 4.8 66 387-459 5-70 (89)
50 KOG1333 Uncharacterized conser 27.5 2.7E+02 0.0058 29.1 7.8 35 504-538 149-184 (241)
51 TIGR00153 conserved hypothetic 26.0 7.4E+02 0.016 25.5 15.9 84 162-254 45-138 (216)
52 PF14932 HAUS-augmin3: HAUS au 26.0 4.8E+02 0.01 28.0 10.1 158 90-248 7-187 (256)
53 PRK10807 paraquat-inducible pr 25.9 5E+02 0.011 31.1 11.2 21 207-227 508-528 (547)
54 cd07666 BAR_SNX7 The Bin/Amphi 25.7 7.5E+02 0.016 26.5 11.3 82 113-194 59-156 (243)
55 PF14932 HAUS-augmin3: HAUS au 25.7 7.3E+02 0.016 26.6 11.4 53 171-225 136-188 (256)
56 cd07624 BAR_SNX7_30 The Bin/Am 25.5 7.4E+02 0.016 25.4 11.3 21 113-133 19-39 (200)
57 PRK15352 type III secretion sy 24.3 4.4E+02 0.0095 24.0 7.7 50 126-175 68-117 (125)
58 PF13874 Nup54: Nucleoporin co 24.3 4.9E+02 0.011 25.2 9.0 52 149-200 75-127 (141)
59 TIGR01834 PHA_synth_III_E poly 24.1 4.8E+02 0.01 29.1 9.7 46 86-131 225-276 (320)
60 PLN03094 Substrate binding sub 23.9 1.1E+03 0.024 26.9 13.7 125 92-219 230-366 (370)
61 COG1392 Phosphate transport re 23.3 8.8E+02 0.019 25.5 15.9 84 162-254 44-137 (217)
62 PF04136 Sec34: Sec34-like fam 23.3 7.4E+02 0.016 24.6 10.3 43 124-166 6-48 (157)
63 PF04156 IncA: IncA protein; 23.0 7.7E+02 0.017 24.7 11.9 108 107-222 84-191 (191)
64 PF06005 DUF904: Protein of un 23.0 5E+02 0.011 22.5 8.9 58 125-182 4-61 (72)
65 PF15290 Syntaphilin: Golgi-lo 23.0 7.4E+02 0.016 27.2 10.4 85 114-198 71-163 (305)
66 PF10372 YojJ: Bacterial membr 22.2 2.5E+02 0.0055 24.3 5.6 50 113-162 15-65 (70)
67 PF12128 DUF3584: Protein of u 22.1 1.6E+03 0.035 29.7 15.6 112 113-229 846-980 (1201)
68 PF09325 Vps5: Vps5 C terminal 20.7 9.3E+02 0.02 24.7 11.9 93 88-180 91-183 (236)
No 1
>KOG2604 consensus Subunit of cis-Golgi transport vesicle tethering complex - Sec34p [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-144 Score=1204.25 Aligned_cols=718 Identities=41% Similarity=0.663 Sum_probs=653.8
Q ss_pred CCCcccchhhchHhhhHhhCCCCHHHHHHHHHHHHhhccCCCCccccccCCCCCCCCCcccccCCCCCCcchhhhhccCh
Q 003959 12 PKSGAVSRGYNFASTWEQNAPLSEQQQAAIGSLFHVVAERPFPVNLAQEHVPGQDNGLSVATKDHSFGESDAIEAVLVNT 91 (783)
Q Consensus 12 ~~~~~~~~~~~~~~~We~~apLs~~q~~~i~~l~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 91 (783)
+..+|.++.+.....|+..|||+|.|+..+..+.++..++|-|+.++.++.+.... .|-++| ..++.++
T Consensus 3 ~~~~ar~~~~~~~~~~~~~a~l~e~q~~~~l~~~~~~~~~~~p~~l~~e~~~s~~~------~d~~l~-----~~~~~~~ 71 (733)
T KOG2604|consen 3 DQREARSRLNYWDRETDNDAPLPEQQTLENLELVHALSKEPRPSLLPIENSSSLTS------QDISLG-----EENLTNT 71 (733)
T ss_pred chhHHHHHhhhhhcccccCCCCcHHHHHHHHHHHHHHHhCCCcccccccccccCCC------CCccCC-----cccccch
Confidence 34567777888888888899999999999999999999999999998775321111 123333 4678999
Q ss_pred HHHHhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 003959 92 NQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQR 171 (783)
Q Consensus 92 ~~F~~w~~~le~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~ 171 (783)
.+|+.||+++...|...++.+|+.|+++|+...++|+.+|+|++++++.|.+|..+|++|+.||++||++||+|+.||.+
T Consensus 72 ~~f~~wf~~~~~~~~~~~~~~y~~y~d~l~~~~~~c~~il~q~~~~~~~l~sl~~k~~~vs~kt~~l~eace~l~~eq~k 151 (733)
T KOG2604|consen 72 NQFLSWFTDLMNPIKQISRPKYRIYLDQLKKRIEECDAILDQTNNALDTLLSLQKKFEFVSQKTSALHEACEQLLEEQSK 151 (733)
T ss_pred hhhhHHHHhhhhHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHHHHHHhhhCCCCcChHHHHHHHHHHHHHHHHHHHH
Q 003959 172 LIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRS 251 (783)
Q Consensus 172 L~~~ae~I~~~L~yF~~Ld~itr~L~sp~~~V~~~~F~~~L~~lD~ci~Fl~~hp~fkda~~Y~~rfkqcltRAl~LIr~ 251 (783)
|.++|+.|+.+|+||++||.++|+||+|+.+|++.+|.+||.+||+||.|+++||+|||++.|+.||||||+|||+|||+
T Consensus 152 l~elae~I~k~L~yF~~le~l~~~l~~pt~~v~~~sF~~~l~~ld~ci~~l~en~~fkd~~~Y~~k~kqcL~kA~~lik~ 231 (733)
T KOG2604|consen 152 LSELAEGIRKKLHYFAELEELNRRLNHPTLSVGKVSFKEMLAKLDECIMFLEENPDFKDAPAYLGKYKQCLSKALGLIKT 231 (733)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhcCcchhhhhhhHHHHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhhhhhHHHHHHHHHhHHHHHHHHHhhhChhHHhHHHHHHHHHHHHHHhh
Q 003959 252 HVLSVLKSASSQVQAAIRSSGGSKTSVSEGVEASLIYVRFKAAASELKPVLEEIESRSSKKEYVQILEECHKLYCEQRLS 331 (783)
Q Consensus 252 ~~~~~L~~~~~~V~~~l~~~~~~~~~~s~~~~~aLlY~kF~~~a~~l~~Li~eie~R~~~~Ey~slL~dc~~~Yf~~R~~ 331 (783)
|++|.|+.++++|.++=++ + ....+..++++|+||.++|+++||++++||+|+.++||.++|.+||+.||.+|.+
T Consensus 232 y~~~vlkq~t~q~l~~~~~--~---~~~~~~~~sl~Y~kf~aaa~~~k~~i~eie~rs~~~e~~qlL~~~~~~Y~~qRl~ 306 (733)
T KOG2604|consen 232 YFTNVLKQTTSQVLKRSKN--M---NPHADLAFSLFYVKFSAAAHKLKPVIEEIEKRSEKEEYDQILAECHQHYFQQRLR 306 (733)
T ss_pred HHHHHHHHHHHHHhccCCC--C---CCccchhhhhhhhHHHHHHhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998766221 1 1223677899999999999999999999999998899999999999999999999
Q ss_pred hhhHHHHHHHHhHhccCCchhhHHhHHHHHHHHHHHHHHhhcccCCCCccchhchhhhHHHHHHHHHHhhcccccccCCH
Q 003959 332 LVKGIVQQRISEFSKKETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSSSEDISSLAPLIDPLSTFLYDILRPKLIHETNV 411 (783)
Q Consensus 332 LL~p~i~~~l~e~~~~~~l~~l~r~~~~~l~~~C~~E~~Lf~~FF~~~~~~~~~l~~~le~Lc~~LYd~lRp~Ii~e~~L 411 (783)
|++|+|+.+|.+++..+++|+++|+||+||+++|.||++||.+||+.+ ...+..|+++||.++||..||+|+|+.|+
T Consensus 307 ll~pvi~~~i~~~~~~~~~~s~~rsg~afl~~~c~dE~kLf~Eff~~~---~f~~~~~~~~lc~~lyd~~r~~ilh~~~l 383 (733)
T KOG2604|consen 307 LLKPVIDYHIKEFFVKKDLCSLIRSGCAYLQQTCADENKLFREFFIMG---DFKLMHYLENLCQSLYDNSRPLILHEKHL 383 (733)
T ss_pred ccCcchHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHHHHHHhhcCCC---chHHHHHHHHhchHhhcchhhHHHHHHHH
Confidence 999999999999998889999999999999999999999999999987 36799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccCCCCchhhhhccCCCC
Q 003959 412 DLLCELVDILKVEVLGEQLSRRSESLAGLRPTLERILADVHERLTFRARTHIRDEIANYIPSDEDLNYPSKLEQSAGTKL 491 (783)
Q Consensus 412 ~~Lcel~~iL~~e~l~e~~~~~~~~~~~~~~~~~~lLqD~QeRLifRaq~yi~~~I~~Y~Ps~~DL~yP~kL~~~~~~~~ 491 (783)
++||+.|++++.++++++.+ ....+++..++||++|+||||+||+|+||+++|.+|+|++|||+||+|+++......
T Consensus 384 ~tL~e~~si~~~~~le~~~~---~~~~~~~~~~~~il~dvqeRL~fr~~~yiq~dI~~y~Pt~~dL~~~~k~~~~~~~~~ 460 (733)
T KOG2604|consen 384 ETLCEVCSILQSEQLEEHVQ---ERLDAFAEFLNPILQDVQERLVFRVQTYIQTDIQNYSPTEEDLAYPAKLEMSEFILQ 460 (733)
T ss_pred HHHHHHHHhhccHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcCCCChhhccchHHHHhhHHHHh
Confidence 99999999999999988765 333378999999999999999999999999999999999999999999998542211
Q ss_pred C---CCCC------CCCcccccccCccHHHHHHHHHhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchh
Q 003959 492 E---TTPA------DENPDVYKTWYPPLEKTVSCLSKLYQCLEQAVFTGLAQEAVEVCSESIQKASKLIAKRSTPMDGQL 562 (783)
Q Consensus 492 ~---~~~~------~~~~~~~~~wYPpl~ktL~lLSkly~~v~~~VF~~LA~eaV~~Ci~SL~~As~~I~~~~~~~Dg~L 562 (783)
+ .++. ......-.+| |||+|||.||||||||||++||+|+||+++|.||+||.+|++.|+++++++||+|
T Consensus 461 ~l~~~D~e~~~~~~~~~~~~~~s~-p~v~kTL~~LSklYrcids~vf~~lA~~~~~~CI~Sl~~A~~~i~knk~~lDa~L 539 (733)
T KOG2604|consen 461 SLRLSDEEKLDSDVPQKSAMTESW-PPVRKTLVCLSKLYRCIDSPVFDGLAQEALEDCIQSLSGAYKDISKNKTKLDAEL 539 (733)
T ss_pred hccCCchhhhcchhhhhhccccCC-chHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHHHHHHhHHHHhhhccccccchh
Confidence 1 1110 0112234567 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHhhhccccccccccccccccchhhHHHHHHHHccCCccccccchhhhhh---hcccchhhhhhhhHHHHHHH
Q 003959 563 FLIKYLLILREQIAPFDIEFSVTHKELDFSHLLEHLRRILRGQASLFDWSRSTSLAR---TLSPRVLESQIDAKKELEKS 639 (783)
Q Consensus 563 FlIKhLLiLReQi~~Fdi~f~~~e~~lDFs~~~~~~~~ll~~~~~lf~~ss~~~l~~---~l~P~v~e~~~Dsk~eld~~ 639 (783)
|+|||||||||||+||+|+|+++|+++|||++++++++++.+...||+++++|++++ .++|+|+++++|+|+|||.+
T Consensus 540 fliKhLLiLReQiapFriq~tv~e~~lDfs~v~~a~~~vl~~~~~~f~ls~~nallell~E~tp~v~e~~lDsrkeld~q 619 (733)
T KOG2604|consen 540 FLIKHLLILREQIAPFRIQFTVKETSLDFSKVREAFRSVLSNTSKWFSLSSNNALLELLRELTPKVRESQLDSRKELDQQ 619 (733)
T ss_pred hHHHHHHHHHHhccccceeeeeccccccHHHHHHHHHHHHhcccchhhcccchHHHHHHHHcChHHHHhhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999888999999998766 46999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhcCCCCcccchhcccccccccccChhHHHHHHHHHHHHHHhhcHHH
Q 003959 640 LKATCEEFIMAVTKLVVDPMLSFVAKVTAVKVALSSGNQNQNVDSLMAKPLKDQAFATPDKVAELVHKVNAAIQQELPPV 719 (783)
Q Consensus 640 Lk~~ce~fI~~~t~~i~~pl~~f~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~q~fa~p~~i~~~~~~~~~~i~~~lp~~ 719 (783)
||.+|+.||+.++..+++|+.+|+.++.+.+.......++-+........+.+++||.|..|..++.++...+...++.+
T Consensus 620 Lr~a~~~fi~~asll~v~~l~~~i~~s~de~~~~~~~~p~~k~~~~~i~~~~q~~~a~~~~V~~lv~~v~~~~~~~~~~~ 699 (733)
T KOG2604|consen 620 LRSACEKFIESASLLVVGDLLDFILKSIDELLKYSQATPEHKESLAAIYLLEQSAWAAPTKVTVLVEAVQELIKNKLYVI 699 (733)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999998877654444433333344567889999999999999999999999999999
Q ss_pred HHHHHhhcCChhHHHHhHHHHHHHHHHHHHHHH
Q 003959 720 MAKMKLYLQNPSTRTILFKPVKTNIVEAHIQVQ 752 (783)
Q Consensus 720 ~~~m~lYL~d~~t~~iL~~pI~~~i~~~~~q~~ 752 (783)
+..|.+|+.|+.+.++.++||+++|+|+|..|.
T Consensus 700 ~~~~~~~~sn~~~~f~~f~~~~n~i~q~f~~~~ 732 (733)
T KOG2604|consen 700 QASMELLLSNDDENFIYFQPVRNNIQQVFYKFM 732 (733)
T ss_pred HHHHHHHhhcCcccchhhhHHHHHHHHHHHHhh
Confidence 999999999999999999999999999998864
No 2
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=100.00 E-value=1.9e-42 Score=339.25 Aligned_cols=155 Identities=43% Similarity=0.748 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH
Q 003959 112 KYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELEN 191 (783)
Q Consensus 112 ~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~ 191 (783)
+|+.|.++|..+.++|+.++++++++++.|++|..+|..|+++|++||++|++|+.||++|++++++|+++|+||++||+
T Consensus 1 ~y~~y~~~L~~~~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~ 80 (157)
T PF04136_consen 1 KYRQYLDYLQQYREECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDP 80 (157)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCccCCccHHHHHHHHHHHHHHhhhCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003959 192 IAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQA 266 (783)
Q Consensus 192 itr~L~sp~~~V~~~~F~~~L~~lD~ci~Fl~~hp~fkda~~Y~~rfkqcltRAl~LIr~~~~~~L~~~~~~V~~ 266 (783)
|+|+||+|+.+|.+++|.+||.+||+||+||++||+|||+++|++||+|||+|||+|||+||++.||+++++|.+
T Consensus 81 itr~Ln~p~~sV~~~~F~~~L~~LD~cl~Fl~~h~~fkea~~Y~~rf~q~ltRAl~lIk~y~~~~l~~~~~~vl~ 155 (157)
T PF04136_consen 81 ITRRLNSPGSSVNSDSFKPMLSRLDECLEFLEEHPNFKEAEVYLIRFRQCLTRALTLIKNYVVNTLRSATNQVLK 155 (157)
T ss_pred HHHHHcCCCCcccchHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999864
No 3
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=99.32 E-value=1e-06 Score=104.80 Aligned_cols=542 Identities=15% Similarity=0.207 Sum_probs=353.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhH
Q 003959 110 EEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDEL 189 (783)
Q Consensus 110 ~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~L 189 (783)
-.....+++++..-.++.+.+-.+++..-..-++|...-.....+|..+-+..+.|-.+++.++...+-+..-+..|.-=
T Consensus 30 l~~~~~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~f~Ls 109 (618)
T PF06419_consen 30 LKINQEFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLERFTLS 109 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 33445566666666666667767777777777777777777788899999999999999999999999999999999755
Q ss_pred HHHHHhhCCCCCccCCccHHHHHHHHH----HHHHHhhhCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003959 190 ENIAASFYSPNMNVGNGNFFHLLKRLD----ECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQ 265 (783)
Q Consensus 190 d~itr~L~sp~~~V~~~~F~~~L~~lD----~ci~Fl~~hp~fkda~~Y~~rfkqcltRAl~LIr~~~~~~L~~~~~~V~ 265 (783)
+.=..-|.+... .-++.|...|.|.. +|-.=| .-++.+=+-....+-.+.+.+|..-|-.++...+++...+
T Consensus 110 ~~E~~~L~~~~~-~v~~~FF~~L~r~~~I~~~c~~LL-~~~~~~ag~~iM~~~~~~~e~a~erl~~w~q~e~~~l~~~-- 185 (618)
T PF06419_consen 110 EEEEDALTSGEE-PVDDEFFDALDRVQKIHEDCKILL-STENQRAGLEIMEQMSKYLERAYERLYRWVQRECRSLNLD-- 185 (618)
T ss_pred HHHHHHHhCCCC-CCCHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc--
Confidence 544556655422 34788999888774 465555 4446666666667777777777777777776666655110
Q ss_pred HHHHhcCCCCCCCCcchhhhhhHHHHHHHHHhHHHHHHHHHhhhChhHHhHHHHHHHHHHHHHHhhhhhHHHHHHHHhHh
Q 003959 266 AAIRSSGGSKTSVSEGVEASLIYVRFKAAASELKPVLEEIESRSSKKEYVQILEECHKLYCEQRLSLVKGIVQQRISEFS 345 (783)
Q Consensus 266 ~~l~~~~~~~~~~s~~~~~aLlY~kF~~~a~~l~~Li~eie~R~~~~Ey~slL~dc~~~Yf~~R~~LL~p~i~~~l~e~~ 345 (783)
.+.. .+.++.-+..+..| |+ +.+.|.+.|.+.|.+.|..-.-..++.-.
T Consensus 186 ---------~~~~----------------~~~l~~al~~L~~r---p~---lf~~~l~~~~~~R~~~l~~~F~~aLt~g~ 234 (618)
T PF06419_consen 186 ---------NPEV----------------SPLLRRALRYLRER---PV---LFNYCLDEFAEARSKALLRRFLDALTRGG 234 (618)
T ss_pred ---------Cccc----------------chHHHHHHHHHhcC---hH---HHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 0101 22344444455444 44 46789999999999988775555553222
Q ss_pred c-----------cCCchhhHHhHHHHHHHHHHHHHHhhcccCCCCccc-------------------hhchhhhHHHHHH
Q 003959 346 K-----------KETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSSSED-------------------ISSLAPLIDPLST 395 (783)
Q Consensus 346 ~-----------~~~l~~l~r~~~~~l~~~C~~E~~Lf~~FF~~~~~~-------------------~~~l~~~le~Lc~ 395 (783)
. .+|-..++-.-.+|+-|..-.|.++....|...+.. ..-+...++++|.
T Consensus 235 ~~~~~~rPIel~AhDP~RYvGDmLAwvHq~~a~E~E~l~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~i~~~l~r 314 (618)
T PF06419_consen 235 PGGSPSRPIELHAHDPLRYVGDMLAWVHQAIASEREFLESLFKFDEDEIAEGSSSGFDSNPWSEELINELLDRILEGLCR 314 (618)
T ss_pred CCCCCCCchhhhccChHHHHHHHHHHHHHHhhhHHHHHHHHhcccccccccccccccccccchHHHHHHHHHHHHHHHhH
Confidence 1 147778999999999999999999999999754311 1124567788888
Q ss_pred HHHHhhcccccccCCHHHHHHHHHHHHHH--HhhhhhhcchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCC
Q 003959 396 FLYDILRPKLIHETNVDLLCELVDILKVE--VLGEQLSRRSESLAGLRPTLERILADVHERLTFRARTHIRDEIAN-YIP 472 (783)
Q Consensus 396 ~LYd~lRp~Ii~e~~L~~Lcel~~iL~~e--~l~e~~~~~~~~~~~~~~~~~~lLqD~QeRLifRaq~yi~~~I~~-Y~P 472 (783)
||=-.+-.-|-.+.+.-++-+++.+|+=| |+...++.. ..+-..+..+..-++.++.--.+.+++.=-.. -.|
T Consensus 315 plk~RvEQvi~se~~~i~~yki~~LL~fY~~~~~k~i~~~----s~L~~tl~~L~~~a~~~f~~~l~~~~~~l~~~~~~~ 390 (618)
T PF06419_consen 315 PLKIRVEQVISSEEDPITLYKIANLLSFYQMTFSKLIGED----SSLIETLKELQDLAQKKFFSSLRDHVAKLLRSAPEP 390 (618)
T ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHcCCC----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 88877777778899999999999999974 555544322 13555666777777777766666666443343 355
Q ss_pred CccCCCCchhhhhccCCCCCCCCCCCCcccccccCccHHHHHHHHHhhhhccchhhhh-------HHHHHHHHHHHHHHH
Q 003959 473 SDEDLNYPSKLEQSAGTKLETTPADENPDVYKTWYPPLEKTVSCLSKLYQCLEQAVFT-------GLAQEAVEVCSESIQ 545 (783)
Q Consensus 473 s~~DL~yP~kL~~~~~~~~~~~~~~~~~~~~~~wYPpl~ktL~lLSkly~~v~~~VF~-------~LA~eaV~~Ci~SL~ 545 (783)
.+.||.-|+-+ ..++..|.-|...-+.++.. .-=..++..++.-+.
T Consensus 391 ~~~DL~PP~~l---------------------------~d~l~~L~~il~~~~~s~~~~~~~~~~~~~~~Il~~~idpll 443 (618)
T PF06419_consen 391 PPADLSPPEWL---------------------------IDFLSLLREILDVYDSSLSPDDDRENDNDFKPILDEPIDPLL 443 (618)
T ss_pred CCCCCCCCHHH---------------------------HHHHHHHHHHHHHhhcccCCccchhhhhHHHHHHHHHhHHHH
Confidence 55677765443 34444444444332222221 112234444455554
Q ss_pred HHHHHHHhcCCCCcc-hhHHHHhHHHHhhhccccccccccccccccchhhHHHHHHHHccCCccccccchhhhhhhcccc
Q 003959 546 KASKLIAKRSTPMDG-QLFLIKYLLILREQIAPFDIEFSVTHKELDFSHLLEHLRRILRGQASLFDWSRSTSLARTLSPR 624 (783)
Q Consensus 546 ~As~~I~~~~~~~Dg-~LFlIKhLLiLReQi~~Fdi~f~~~e~~lDFs~~~~~~~~ll~~~~~lf~~ss~~~l~~~l~P~ 624 (783)
......+..-.+-|. ..|+|--|..++.-|.||+. +. +.+
T Consensus 444 ~~c~~~a~~L~~~~~~~if~iNCl~~i~s~L~~~~~-----------~~--~~~-------------------------- 484 (618)
T PF06419_consen 444 QMCQKSASPLAPKDDRAIFMINCLDLIQSTLSPFEF-----------TS--ERV-------------------------- 484 (618)
T ss_pred HHHHHHhhccCChhhhHHHHHHhHHHHHHHccChHh-----------HH--HHH--------------------------
Confidence 444444444456666 89999999999999998873 11 000
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHhhhcCCCCcccchhcccccccccccChhHHH
Q 003959 625 VLESQIDAKKELEKSLKATCEEFIMAVTKLVVD--PMLSFVAKVTAVKVALSSGNQNQNVDSLMAKPLKDQAFATPDKVA 702 (783)
Q Consensus 625 v~e~~~Dsk~eld~~Lk~~ce~fI~~~t~~i~~--pl~~f~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~q~fa~p~~i~ 702 (783)
.+|+.++...+..+++.-+..+.. .|..+...+..+ .. ......|+++.+-.+|+.|.
T Consensus 485 ---------e~L~~~id~~~~~Lv~~Q~~~lL~~sGL~~~~~~l~~i---~~--------~~~~~~pls~~p~~~~~~l~ 544 (618)
T PF06419_consen 485 ---------EELQDQIDAHVDTLVEEQASFLLERSGLGDLYNALNMI---FF--------DYDMYGPLSENPGMDPDSLS 544 (618)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHhh---cc--------CCcccCCcccCccCCHHHHH
Confidence 122222222223333333222211 111111111100 00 11235678888899999999
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHHHHhcCChhhhhccCCCCHHHHHHHh
Q 003959 703 ELVHKVNAAIQQELPPVMAKMKLYLQNPSTRTILFKPVKTNIVEAHIQVQSLLKAEYMPEEQSIINMVSMPDLQAQL 779 (783)
Q Consensus 703 ~~~~~~~~~i~~~lp~~~~~m~lYL~d~~t~~iL~~pI~~~i~~~~~q~~~ll~~~Y~~e~~~~i~~~~~~~l~~~l 779 (783)
.+..++..-+-.-++.....+ ..|.++.++.-+-+..=.+++.+|++|+..+..-++..+ .+--.+|+||+.+|
T Consensus 545 ~a~~kld~fL~sa~~d~~~~L-~~L~Sp~l~~~I~~~a~~~f~~~Y~~v~~~v~d~~n~y~--sl~~~tpeeI~~LL 618 (618)
T PF06419_consen 545 NALQKLDDFLPSALTDAQPNL-FKLQSPKLRDDIRERAFERFCKAYEKVYEAVMDPDNGYE--SLFPRTPEEIRTLL 618 (618)
T ss_pred HHHHHHHHHHcccchhhhHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhChhcccc--cccCCCHHHHhhcC
Confidence 999999888888888888888 899999999999999999999999999999986444433 44455788998765
No 4
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=98.35 E-value=0.02 Score=69.80 Aligned_cols=119 Identities=9% Similarity=0.214 Sum_probs=85.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhcCCCCcccchhcccccccccccChhHHHHHHHH-HH
Q 003959 631 DAKKELEKSLKATCEEFIMAVTKLVVDPMLSFVAKVTAVKVALSSGNQNQNVDSLMAKPLKDQAFATPDKVAELVHK-VN 709 (783)
Q Consensus 631 Dsk~eld~~Lk~~ce~fI~~~t~~i~~pl~~f~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~q~fa~p~~i~~~~~~-~~ 709 (783)
+.+++.....+..|+.++..+...=.+.|.+|++.+++.... .++ ..+..|+==|...++.++.. .-
T Consensus 574 ~~~~~A~~~~~~~~~~Y~~~~l~r~~~kL~~F~~gve~l~~~---~~~---------~ei~~~~~ySk~~l~kvl~~y~~ 641 (701)
T PF09763_consen 574 EFRKEAKQIYDEHLEAYVTFLLRRPFGKLLDFFEGVEALLQT---VSP---------EEISYQAAYSKQELKKVLKSYPS 641 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhc---cCc---------hhcccchhccHHHHHHHHHhCCh
Confidence 344455566667777777777667788888999988876433 111 11222222245667788877 67
Q ss_pred HHHHhhcHHHHHHHHhhc--------CChhHHHHhHHHHHHHHHHHHHHHHHHHHhcCCh
Q 003959 710 AAIQQELPPVMAKMKLYL--------QNPSTRTILFKPVKTNIVEAHIQVQSLLKAEYMP 761 (783)
Q Consensus 710 ~~i~~~lp~~~~~m~lYL--------~d~~t~~iL~~pI~~~i~~~~~q~~~ll~~~Y~~ 761 (783)
+.|+..+..++++|.-.+ .+......+.+.++..-++.|..++.++.+.|..
T Consensus 642 kev~k~i~~l~krveKHf~~~~~~~~~~~~Ll~~vW~~~q~~~i~~~~~l~~li~~~Y~g 701 (701)
T PF09763_consen 642 KEVRKGIEALYKRVEKHFSRDADDPSFEEDLLQVVWSAMQEEFIRQYERLETLIQKCYPG 701 (701)
T ss_pred HHHHHHHHHHHHHHHHHcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 778888888999999988 4455666778999999999999999999999963
No 5
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.14 Score=59.65 Aligned_cols=392 Identities=16% Similarity=0.216 Sum_probs=229.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH
Q 003959 112 KYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELEN 191 (783)
Q Consensus 112 ~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~ 191 (783)
.-..|+..++......+.+-++++..-...+.|..++..+..+|+.+-..-+++=.|..+++.-.+-|...|.-|.--..
T Consensus 65 iN~e~l~ef~~i~~~l~~v~e~v~km~~t~~~l~s~ls~~k~~t~dli~~t~~l~~e~~~le~r~kii~~Fl~~fqLs~~ 144 (655)
T KOG3758|consen 65 INEEFLKEFKEIKRRLDRVSEDVEKMANTCDKLKSNLSTSKATTQDLIQKTETLKEEAAQLELRKKIINAFLDNFQLSSE 144 (655)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChH
Confidence 34467888888888888888888888888899999999999999999999999999999999999999999999975555
Q ss_pred HHHhhCCCCCccCCccHHHHHHHHH---HHHHHhhhCCCCcChHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 003959 192 IAASFYSPNMNVGNGNFFHLLKRLD---ECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLS-VLKSASSQVQAA 267 (783)
Q Consensus 192 itr~L~sp~~~V~~~~F~~~L~~lD---~ci~Fl~~hp~fkda~~Y~~rfkqcltRAl~LIr~~~~~-~L~~~~~~V~~~ 267 (783)
=.+-|.+.|- -++.|...|++.- +.-.+|-+-|++.-+.--..+-.-.+-+|..-|-.+..+ .+++.
T Consensus 145 E~~~L~~~g~--i~e~FF~vL~rvqeIh~~~~~Ll~~~~~~Ag~eime~M~~~~E~a~erl~r~~qs~e~~~l------- 215 (655)
T KOG3758|consen 145 ELDLLTESGP--IDEDFFKVLDRVQEIHDNCRLLLQTPNQTAGLEIMEKMALIQEGAYERLFRWSQSSECRNL------- 215 (655)
T ss_pred HHHHHhcCCc--chHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhcCC-------
Confidence 5555544332 2578888887652 223344444443333333333223333333222222111 11110
Q ss_pred HHhcCCCCCCCCcchhhhhhHHHHHHHHHhHHHHHHHHHhhh-ChhHHhHHHHHHHHHHHHHHhhhhhHHHHHHHHhHhc
Q 003959 268 IRSSGGSKTSVSEGVEASLIYVRFKAAASELKPVLEEIESRS-SKKEYVQILEECHKLYCEQRLSLVKGIVQQRISEFSK 346 (783)
Q Consensus 268 l~~~~~~~~~~s~~~~~aLlY~kF~~~a~~l~~Li~eie~R~-~~~Ey~slL~dc~~~Yf~~R~~LL~p~i~~~l~e~~~ 346 (783)
.+++ ..+..+++...-.+. .+|. +-+.|.+.|.+.|.+-| ++.-|+.+..
T Consensus 216 ------------~~t~-----------~~E~~~il~kA~~~L~~~p~---lfk~~ide~~~aR~~~L---~~~Fisaltr 266 (655)
T KOG3758|consen 216 ------------TGTD-----------SQEVSPILRKAFVFLSSRPV---LFKYLIDEVGTARSQSL---LRQFISALTR 266 (655)
T ss_pred ------------cccc-----------chhhHHHHHHHHHHHhcChH---HHHHHHHHHHHHHHHHH---HHHHHHHHcc
Confidence 0011 012333333333222 2333 45567788888887654 3334444432
Q ss_pred -------------cCCchhhHHhHHHHHHHHHHHHHHhhcccCCCCc-------------------cchhchhhhHHHHH
Q 003959 347 -------------KETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSSS-------------------EDISSLAPLIDPLS 394 (783)
Q Consensus 347 -------------~~~l~~l~r~~~~~l~~~C~~E~~Lf~~FF~~~~-------------------~~~~~l~~~le~Lc 394 (783)
.+|-..++..-.+|+-|.-..|.+++...|.... .|..-+...++++|
T Consensus 267 g~~~~~PrpIel~ahDPlRyIGDmLawlHq~ia~Ekelv~aLfd~~~~d~q~n~~~~en~~~vl~~~dn~lld~i~~gvc 346 (655)
T KOG3758|consen 267 GGPGGMPRPIELHAHDPLRYIGDMLAWLHQAIANEKELVEALFDFKKEDLQDNISISENLPNVLGGIDNKLLDDILEGVC 346 (655)
T ss_pred CCCCCCCCCccccCCChHHHHHHHHHHHHHHhhhHHHHHHHHhcchhhhhccCCCchhHhHHHHhchhhhHHHHHHHHhc
Confidence 1366689999999999999999999999992211 11223446677777
Q ss_pred HHHHHhhcccccccCCHHHHHHHHHHHHH--HHhhhhhhcchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-C
Q 003959 395 TFLYDILRPKLIHETNVDLLCELVDILKV--EVLGEQLSRRSESLAGLRPTLERILADVHERLTFRARTHIRDEIANY-I 471 (783)
Q Consensus 395 ~~LYd~lRp~Ii~e~~L~~Lcel~~iL~~--e~l~e~~~~~~~~~~~~~~~~~~lLqD~QeRLifRaq~yi~~~I~~Y-~ 471 (783)
.||==.+-..+.-+.+.-.|-++..+|+= ++++.-++... .+-..+..|-.-.+.|.+=--..++.. +.++ .
T Consensus 347 rPlkvRvEqil~~e~~~Iilfki~nlL~FY~~~fs~~v~~ds----~l~~~l~~L~d~s~q~~~~~l~~~~~~-l~~~~l 421 (655)
T KOG3758|consen 347 RPLKVRVEQILQAEKNAIILFKISNLLKFYRVTFSKLVQDDS----ALLNTLKELEDISKQRFIGYLEDHVKK-LMRKEL 421 (655)
T ss_pred chhHHHHHHHHHcCcCceeehhHHHHHHHHHHHHHHHhcccH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcC
Confidence 77776666667778999999999999996 45654443211 233334433333444444333444433 3344 2
Q ss_pred CCccCCCCchhhhhccCCCCCCCCCCCCcccccccCccHHHHHHHHHhhhh---cc----------chhhhhHHHHHHHH
Q 003959 472 PSDEDLNYPSKLEQSAGTKLETTPADENPDVYKTWYPPLEKTVSCLSKLYQ---CL----------EQAVFTGLAQEAVE 538 (783)
Q Consensus 472 Ps~~DL~yP~kL~~~~~~~~~~~~~~~~~~~~~~wYPpl~ktL~lLSkly~---~v----------~~~VF~~LA~eaV~ 538 (783)
|.|.||--| |.|+..|.+|--|+. .+ ...+|.-+-.-++.
T Consensus 422 ~p~~DLlPp---------------------------p~v~~~l~ll~ei~~~~~a~~~~~d~~~~df~~l~s~vldpilq 474 (655)
T KOG3758|consen 422 SPPSDLLPP---------------------------PAVREYLNLLVEIFEIYEASHTAEDGEQLDFKLLLSCVLDPILQ 474 (655)
T ss_pred CCccccCCC---------------------------HHHHHHHHHHHHHHHHhhhhhccccccccchHHHHHHHHHHHHH
Confidence 333366544 445555555554444 11 13344445556777
Q ss_pred HHHHHHHHHHHHHHhcCCCCcc-hhHHHHhHHHHhhhccccc
Q 003959 539 VCSESIQKASKLIAKRSTPMDG-QLFLIKYLLILREQIAPFD 579 (783)
Q Consensus 539 ~Ci~SL~~As~~I~~~~~~~Dg-~LFlIKhLLiLReQi~~Fd 579 (783)
.|..+-..- .+++--| ..|+|--|=..|.-+++|+
T Consensus 475 ~c~~sae~~------lp~~d~~~~if~iNcL~~iks~l~~~e 510 (655)
T KOG3758|consen 475 MCQKSAEAH------LPTSDKGSLIFMINCLDLIKSRLARYE 510 (655)
T ss_pred HHHHHHHhc------CCCcccccceehhhhHHHHHhHHHHHH
Confidence 776654110 1112222 3566666655565555554
No 6
>KOG2604 consensus Subunit of cis-Golgi transport vesicle tethering complex - Sec34p [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.0061 Score=71.26 Aligned_cols=150 Identities=17% Similarity=0.077 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhH
Q 003959 115 HYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKT-----KTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDEL 189 (783)
Q Consensus 115 ~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT-----~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~L 189 (783)
.++--|++.++-++ |.-.++++--.|+.+...+..|..++ .+.+.+|-+|+.|+.-...-.+-...+.-++..=
T Consensus 543 KhLLiLReQiapFr-iq~tv~e~~lDfs~v~~a~~~vl~~~~~~f~ls~~nallell~E~tp~v~e~~lDsrkeld~qLr 621 (733)
T KOG2604|consen 543 KHLLILREQIAPFR-IQFTVKETSLDFSKVREAFRSVLSNTSKWFSLSSNNALLELLRELTPKVRESQLDSRKELDQQLR 621 (733)
T ss_pred HHHHHHHHhccccc-eeeeeccccccHHHHHHHHHHHHhcccchhhcccchHHHHHHHHcChHHHHhhhhHHHHHHHHHH
Confidence 44445555555555 44567777788999999999999999 7888999999999998887777777777777777
Q ss_pred HHHHHhhCCCCCccCCccHHHHHHHHHHHHHHhhhCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003959 190 ENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQ 265 (783)
Q Consensus 190 d~itr~L~sp~~~V~~~~F~~~L~~lD~ci~Fl~~hp~fkda~~Y~~rfkqcltRAl~LIr~~~~~~L~~~~~~V~ 265 (783)
..+.+...+....|.++.|.-++.-+|+|+.+...||++|++..|...|.||..++.+.++..+-..++...+.+.
T Consensus 622 ~a~~~fi~~asll~v~~l~~~i~~s~de~~~~~~~~p~~k~~~~~i~~~~q~~~a~~~~V~~lv~~v~~~~~~~~~ 697 (733)
T KOG2604|consen 622 SACEKFIESASLLVVGDLLDFILKSIDELLKYSQATPEHKESLAAIYLLEQSAWAAPTKVTVLVEAVQELIKNKLY 697 (733)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHhHHH
Confidence 7777777887878999999999999999999999999999999999999999999999999988887777665443
No 7
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=96.45 E-value=2.9 Score=49.32 Aligned_cols=340 Identities=16% Similarity=0.188 Sum_probs=178.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHh
Q 003959 116 YVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAAS 195 (783)
Q Consensus 116 y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~ 195 (783)
-+.+|....+.||.+|..+++.|..| +.+-..++...++||+++..|-..-+.-...-+.++..+.--.-=+.+.+.
T Consensus 15 ~~~~Lh~~i~~cd~~L~~le~~L~~F---q~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~i~ipP~lI~~ 91 (508)
T PF04129_consen 15 NFADLHNQIQECDSILESLEEMLSNF---QNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFIDDIVIPPDLIRS 91 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCHHHHHh
Confidence 45566677889999998888766544 444566666666666666655433333223333332221111111222222
Q ss_pred hCCCCCccCCccHHHHHHHHHHHHHHhhhCCCCcChHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH
Q 003959 196 FYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVY---LLKFRQLQSRALGMIRSHVLSVLKSASS------QVQA 266 (783)
Q Consensus 196 L~sp~~~V~~~~F~~~L~~lD~ci~Fl~~hp~fkda~~Y---~~rfkqcltRAl~LIr~~~~~~L~~~~~------~V~~ 266 (783)
+..+. |+ +.|..-+..+..-+.+...+..++++... ..-...|..+|++=||.|+++.++.... -+++
T Consensus 92 I~~~~--v~-e~~~~~~~~~~~k~~~~~~~~~~~~~~a~~d~~~~Le~L~~ka~~rir~fl~~kI~~lr~~~tn~q~iQ~ 168 (508)
T PF04129_consen 92 ICEGP--VN-EQYIEELLELLKKKIFFSKDQSFKDSKAIKDVKPELEKLKNKAVERIRDFLLKKIKSLRKPKTNSQIIQQ 168 (508)
T ss_pred HhcCC--CC-HHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHH
Confidence 22211 23 35666555666666666666666665554 5667788899999999999998877542 2222
Q ss_pred HHHhcC-------CCCCCCCcc-------hhhhhhHHHHHHHHHhHHHHHHHHHhhh----Chh--HHhHH-----HHHH
Q 003959 267 AIRSSG-------GSKTSVSEG-------VEASLIYVRFKAAASELKPVLEEIESRS----SKK--EYVQI-----LEEC 321 (783)
Q Consensus 267 ~l~~~~-------~~~~~~s~~-------~~~aLlY~kF~~~a~~l~~Li~eie~R~----~~~--Ey~sl-----L~dc 321 (783)
.+-+.. .-.+.+... +.--.++..|+.+...+..|-...-.+. |.+ ...++ -..-
T Consensus 169 ~LLk~~~~~~FL~~~~~~~a~El~~~Yv~tM~~~Y~~~F~~Y~~~L~kl~~~~~~~~~dL~g~~~~~~~~~~s~~~~~~~ 248 (508)
T PF04129_consen 169 VLLKYKELFQFLKKHSPELAKELRQAYVETMSWYYSSYFKRYIRSLEKLQLRIIDSKDDLIGVEDSSKGGFFSSKSSLKN 248 (508)
T ss_pred HHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCccccccccCCCccccc
Confidence 221100 000000000 1113445566655544433321111111 000 00000 0112
Q ss_pred HHHHHH--HHhhhhh-----HHHHHHHHhHhc-cCCchhhHHhHHHHHHHHHHHHHHhhcccCCCCc-cchhchhhhHHH
Q 003959 322 HKLYCE--QRLSLVK-----GIVQQRISEFSK-KETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSSS-EDISSLAPLIDP 392 (783)
Q Consensus 322 ~~~Yf~--~R~~LL~-----p~i~~~l~e~~~-~~~l~~l~r~~~~~l~~~C~~E~~Lf~~FF~~~~-~~~~~l~~~le~ 392 (783)
...||+ .|..+|. |++-.++.+-.. +..+..+.|+-.-.|+-.|..||.--..||..+. ....-|.+.+++
T Consensus 249 ~~~~Fslg~R~~iL~~~~~~p~i~~~~a~~~~~k~~~E~iFRS~~~~L~Dn~t~Ey~F~~~FF~~~~~~~~~if~~If~~ 328 (508)
T PF04129_consen 249 RSSVFSLGRRIDILNSELDAPIIVPQIAEDNSQKYPIEEIFRSLNKALIDNATSEYLFISEFFSGSGDAAEDIFNQIFEP 328 (508)
T ss_pred chhhhhhhHHHHHHhhcccCCccccchhhcccccCCHHHHHHHHHHHHHHhhhHHHHHHHHHHcccccchHHHHHHHHHH
Confidence 234444 5777666 333334433321 2367789999999999999999988899997632 122447778888
Q ss_pred HHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhhhhhcchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 003959 393 LSTFLYDILRPKLIHETNVDLLCELVDILKVEVLGEQLSRRSESLAGLRPTLERILADVHERLTFRARTHIRDEIAN 469 (783)
Q Consensus 393 Lc~~LYd~lRp~Ii~e~~L~~Lcel~~iL~~e~l~e~~~~~~~~~~~~~~~~~~lLqD~QeRLifRaq~yi~~~I~~ 469 (783)
-...+.+.+...+-...|.--|-=++-+.+....+ ..+++ ...++.+ ++-+.--||-|-|..++..|..
T Consensus 329 t~~~~~~~~~~~l~~~~D~iglll~Irl~~~~~~~--~~~R~--ip~ld~y----~~~~~~~LWprF~~i~d~nieS 397 (508)
T PF04129_consen 329 TFSLLQEFTEQLLSNSYDAIGLLLCIRLNQRYQFE--MQRRR--IPVLDSY----LNSLLMLLWPRFQKIMDANIES 397 (508)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH--HHhCC--CCchHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888887655455544333333333332211 12222 1233333 3344445777888877777754
No 8
>PF03081 Exo70: Exo70 exocyst complex subunit; InterPro: IPR004140 The Exo70 protein forms one subunit of the exocyst complex. First discovered in Saccharomyces cerevisiae [], Exo70 and other exocyst proteins have been observed in several other eukaryotes, including humans. In S. cerevisiae, the exocyst complex is involved in the late stages of exocytosis, and is localized at the tip of the bud, the major site of exocytosis in yeast []. Exo70 interacts with the Rho3 GTPase []. This interaction mediates one of the three known functions of Rho3 in cell polarity: vesicle docking and fusion with the plasma membrane (the other two functions are regulation of actin polarity and transport of exocytic vesicles from the mother cell to the bud) []. In humans, the functions of Exo70 and the exocyst complex are less well characterised: Exo70 is expressed in several tissues and is thought to also be involved in exocytosis [].; GO: 0006887 exocytosis, 0000145 exocyst; PDB: 2PFV_A 2B7M_B 2B1E_A 2PFT_A.
Probab=90.18 E-value=35 Score=38.09 Aligned_cols=75 Identities=23% Similarity=0.329 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHhh-cCChhHHHHhHHHHHHHHHHHHHHHHHHHHhcCChhhh---hccCCCCHHH
Q 003959 699 DKVAELVHKVNAAIQQELPPVMAKMKLY-LQNPSTRTILFKPVKTNIVEAHIQVQSLLKAEYMPEEQ---SIINMVSMPD 774 (783)
Q Consensus 699 ~~i~~~~~~~~~~i~~~lp~~~~~m~lY-L~d~~t~~iL~~pI~~~i~~~~~q~~~ll~~~Y~~e~~---~~i~~~~~~~ 774 (783)
+.+++....|....++ +++.-+.| +.|++.+.-|-+.|++.|+-+|..|++- |..-.. .-| =-+|++
T Consensus 293 ~~~ke~f~~Fn~~fee----~~~~q~~~~vpD~~LR~~Lr~~i~~~v~p~Y~~F~~~----~~~~~~~~~Kyi-kyt~~~ 363 (371)
T PF03081_consen 293 ELLKEKFKKFNSAFEE----IYKAQKTWKVPDPELREELRREIKEKVVPAYRRFYER----YRNSQFNPEKYI-KYTPED 363 (371)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHTT---S-HHHHHHHHHHHHHHHHHHHHHHHHH----CCCCSSSHCCC--SS-HHH
T ss_pred HHHHHHHHHHHHHHHH----HHHcCcceecCCHHHHHHHHHHHHHHHHHHHHHHHHH----hcccccCCCCCC-ccCHHH
Confidence 4577777888877777 55555555 5799999999999999999999996544 333222 112 235888
Q ss_pred HHHHhhhc
Q 003959 775 LQAQLDSL 782 (783)
Q Consensus 775 l~~~l~~~ 782 (783)
|..+|+.|
T Consensus 364 le~~l~~L 371 (371)
T PF03081_consen 364 LENMLNEL 371 (371)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHcC
Confidence 88888765
No 9
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=87.40 E-value=71 Score=38.06 Aligned_cols=137 Identities=16% Similarity=0.277 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHH
Q 003959 115 HYVNTLMGRIQTCDDILRQVDGTLDLFN----ELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELE 190 (783)
Q Consensus 115 ~y~~~L~~~~~~~d~ll~~~~~~l~~l~----~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld 190 (783)
.-+..|......||.+|.++...|..|. .++.+-..+++++++++-.=+ ..|....++++.|..-.-.=+-++
T Consensus 75 ~~~~~lhNqi~~cd~Vl~rme~~L~~FQ~~L~sissDI~~lqekS~~m~~~L~---Nrq~v~s~Ls~fVdd~iVpp~lI~ 151 (683)
T KOG1961|consen 75 ENLASLHNQIRACDSVLERMETMLSSFQSDLSSISSDIKILQEKSNDMQLRLE---NRQAVESKLSQFVDDLIVPPELIK 151 (683)
T ss_pred hhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHH---hHHHHHHHHHHHhccccCCHHHHH
Confidence 3445667778899999999888876553 445555566666666654433 334444444444433322222222
Q ss_pred HHHHhhCCCCCccCCccHHHHHHHHHHHHHHhhhCCCCcChHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 003959 191 NIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLK---FRQLQSRALGMIRSHVLSVLKSA 260 (783)
Q Consensus 191 ~itr~L~sp~~~V~~~~F~~~L~~lD~ci~Fl~~hp~fkda~~Y~~r---fkqcltRAl~LIr~~~~~~L~~~ 260 (783)
.|.. | -|+..+|..-|+.|+.=+.+.+.-...||+.....- -..+..+|++-||.|++..++..
T Consensus 152 ~I~~-----g-~vne~~f~~~LeeL~~Kl~~v~~dq~~k~a~a~~Dv~~lLdkLR~KAi~kir~~IlqkI~~f 218 (683)
T KOG1961|consen 152 TIVD-----G-DVNEPEFLEALEELSHKLKLVELDQSNKDAKALKDVEPLLDKLRLKAIEKIREFILQKIKAF 218 (683)
T ss_pred HHHc-----C-CCCchHHHHHHHHHHHHHHhhhhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 1 367779999999999999999977777777773222 12466799999999999888764
No 10
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=83.78 E-value=66 Score=34.46 Aligned_cols=107 Identities=14% Similarity=0.231 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHh
Q 003959 116 YVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAAS 195 (783)
Q Consensus 116 y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~ 195 (783)
|...+.......+.+-.++......++.|..+-..+..+...+....++.+..=..|....+.+...++ .+..+
T Consensus 36 ~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~------~l~~~ 109 (264)
T PF06008_consen 36 YRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQ------ELIEQ 109 (264)
T ss_pred HhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH
Confidence 444444444444444444555555555555555555555555555555555555555555555555433 23322
Q ss_pred h---CCCCCccCCccHHHHHHHHHHHHHHhhhCCCCc
Q 003959 196 F---YSPNMNVGNGNFFHLLKRLDECILYVEGNPQYA 229 (783)
Q Consensus 196 L---~sp~~~V~~~~F~~~L~~lD~ci~Fl~~hp~fk 229 (783)
+ +.-+....+.++..+|..+..-|.-|..+ +|.
T Consensus 110 ~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r-~f~ 145 (264)
T PF06008_consen 110 VESLNENGDQLPSEDLQRALAEAQRMLEEMRKR-DFT 145 (264)
T ss_pred HHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhc-cch
Confidence 2 22122456788999999999999999988 464
No 11
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.10 E-value=50 Score=35.71 Aligned_cols=102 Identities=16% Similarity=0.170 Sum_probs=67.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH----HHHHHHHHHHHHHHHh
Q 003959 106 KSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRL----VIEKQRLIEFAEAVQS 181 (783)
Q Consensus 106 ~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~L----l~eq~~L~~~ae~I~~ 181 (783)
....+..|..-......-....+.|..+++++....+++...........+.|...-+.+ -.+++.|.+-+.++..
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~ 112 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQV 112 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888888889999999988888888888888888777777655433 2333333333333222
Q ss_pred cccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHH
Q 003959 182 KLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDE 217 (783)
Q Consensus 182 ~L~yF~~Ld~itr~L~sp~~~V~~~~F~~~L~~lD~ 217 (783)
+=.==.+|| ..+++.+|.+|+.|++.
T Consensus 113 nG~~t~Yid----------vil~SkSfsD~IsRvtA 138 (265)
T COG3883 113 NGTATSYID----------VILNSKSFSDLISRVTA 138 (265)
T ss_pred cCChhHHHH----------HHHccCcHHHHHHHHHH
Confidence 111111111 13789999999998875
No 12
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.98 E-value=1e+02 Score=34.01 Aligned_cols=180 Identities=17% Similarity=0.239 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhhC--CCCCcc
Q 003959 126 TCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFY--SPNMNV 203 (783)
Q Consensus 126 ~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~L~--sp~~~V 203 (783)
.|+.|-+.++..-..++.|...+..+...++...+-+.+|=..-......|..|+.+|.=.+.--.--+..+ +++..+
T Consensus 41 ~ve~Ir~~i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~~~~~~~r~ 120 (297)
T KOG0810|consen 41 DVEEIRDDIEKLDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQNRSSAGLRT 120 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccchh
Confidence 566666666777777777777888888889999999999988888999999999999875554443333322 334345
Q ss_pred CCccHHHHHHHHHHHHHHhhhCCCCcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcch
Q 003959 204 GNGNFFHLLKRLDECILYVEGNPQYAE-SSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQAAIRSSGGSKTSVSEGV 282 (783)
Q Consensus 204 ~~~~F~~~L~~lD~ci~Fl~~hp~fkd-a~~Y~~rfkqcltRAl~LIr~~~~~~L~~~~~~V~~~l~~~~~~~~~~s~~~ 282 (783)
....+..+..++-+-|. +|.. -..|+.+|+.=..|=+..+.. +.++.+-.+++-+.|+ .
T Consensus 121 rrtq~~~~~kkf~~~M~------~f~~~~~~~r~~~k~~i~Rql~i~~~------~~~~de~ie~~ie~g~--------~ 180 (297)
T KOG0810|consen 121 RRTQTSALSKKLKELMN------EFNRTQSKYREEYKERIQRQLFIVGG------EETTDEEIEEMIESGG--------S 180 (297)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhhCC------CcCChHHHHHHHHCCC--------h
Confidence 55555555555555554 3332 234666666555444433322 1223222233322211 1
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHhhhC-hhHHhHHHHHHHHHHHH
Q 003959 283 EASLIYVRFKAAASELKPVLEEIESRSS-KKEYVQILEECHKLYCE 327 (783)
Q Consensus 283 ~~aLlY~kF~~~a~~l~~Li~eie~R~~-~~Ey~slL~dc~~~Yf~ 327 (783)
. ...=+-+. ....-++.+.+++.|.+ -.....-+.|+|+.+..
T Consensus 181 ~-~f~~~~i~-~~~~~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlD 224 (297)
T KOG0810|consen 181 E-VFTQKAIQ-DRGQAKQTLAEIQERHDEIKKLEKSIRELHQLFLD 224 (297)
T ss_pred H-HHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 11111111 33467889999999973 34666668888888865
No 13
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=71.39 E-value=42 Score=36.20 Aligned_cols=103 Identities=15% Similarity=0.238 Sum_probs=72.0
Q ss_pred hHHHHhhHHH----HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 003959 91 TNQFYNWFTD----LELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLV 166 (783)
Q Consensus 91 ~~~F~~w~~~----le~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll 166 (783)
...+..+|.. -+..+..+...+|..+.+.|......=..|+.++...-..|.... .....+..-+..|..|.
T Consensus 176 i~~~l~~~~~~~~~~~~~lf~~eL~k~~~~~~~i~~~~~~Q~~ll~~i~~~~~~~~~~~----~~~~~~~~r~~~~~~l~ 251 (296)
T PF13949_consen 176 ISKLLSELNKNGSADFEALFEEELKKFDPLQNRIQQNLSKQEELLQEIQEANEEFAQSR----KSDQEQKERESALQRLE 251 (296)
T ss_dssp HHHHHHHHHHSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS------SHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccHHHHHHHHHHHHHH
Confidence 3455566653 345566666677777888888887777777777777766664443 22222355566677777
Q ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHHhhC
Q 003959 167 IEKQRLIEFAEAVQSKLKYFDELENIAASFY 197 (783)
Q Consensus 167 ~eq~~L~~~ae~I~~~L~yF~~Ld~itr~L~ 197 (783)
.--....++...|.+-++||+.|..+..+|.
T Consensus 252 ~a~~~y~el~~~l~eG~~FY~~L~~~~~~l~ 282 (296)
T PF13949_consen 252 AAYDAYKELSSNLEEGLKFYNDLLEILNKLQ 282 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 7777778999999999999999999988774
No 14
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=68.35 E-value=56 Score=36.34 Aligned_cols=103 Identities=10% Similarity=0.179 Sum_probs=79.2
Q ss_pred hHHHHhhHHH----HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 003959 91 TNQFYNWFTD----LELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLV 166 (783)
Q Consensus 91 ~~~F~~w~~~----le~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll 166 (783)
...+..++.. ....+..+.-.+|..+.+.|......=+.|+.++...-+.|...... ...++.-+...++|-
T Consensus 226 ~~~ll~~~~~~~~~~~e~lf~~eL~kf~~~~~~i~~~~~~Q~~ll~~i~~~~~~f~~~~~~----~~~~~~r~~~l~~L~ 301 (342)
T cd08915 226 LPKLITEYKKNGTTEFEDLFEEHLKKFDKDLTYVEKTKKKQIELIKEIDAANQEFSQVKNS----NDSLDPREEALQDLE 301 (342)
T ss_pred cHHHHHHhhccccchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----chhhhHHHHHHHHHH
Confidence 3677788753 22456666778899999999999999999999988888887666443 444555556666666
Q ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHHhhC
Q 003959 167 IEKQRLIEFAEAVQSKLKYFDELENIAASFY 197 (783)
Q Consensus 167 ~eq~~L~~~ae~I~~~L~yF~~Ld~itr~L~ 197 (783)
.--....++...+.+-++||+.|-.+..+|.
T Consensus 302 ~ay~~y~el~~~l~eG~~FY~dL~~~~~~l~ 332 (342)
T cd08915 302 ASYKKYLELKENLNEGSKFYNDLIEKVNRLL 332 (342)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 6667777999999999999999999988874
No 15
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=56.64 E-value=46 Score=39.05 Aligned_cols=96 Identities=16% Similarity=0.196 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhhC-----C
Q 003959 124 IQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFY-----S 198 (783)
Q Consensus 124 ~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~L~-----s 198 (783)
..|+...|.+++.+...++.+..+|...-....++...|+.+-.--.++..++...+.-|.|++++-.-..+|- .
T Consensus 89 ~dhYk~aLgqv~~ak~lv~~vakdyvrLlk~~dSlyrck~lk~aAlgrm~tv~k~q~~sl~yLeqVrqhl~rlPsIDp~t 168 (620)
T KOG1490|consen 89 RDHYKIALGQVSTAKHLVENVARDYVRLLKYGDSLYRCKQLKRAALGRMATIIKRQKSSLEYLEQVRQHLSRLPAIDPNT 168 (620)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCCCCc
Confidence 56899999999999999999999999999999999999998888899999999999999999999888887774 3
Q ss_pred CCC------ccCCccHHHHHHHHHHHH
Q 003959 199 PNM------NVGNGNFFHLLKRLDECI 219 (783)
Q Consensus 199 p~~------~V~~~~F~~~L~~lD~ci 219 (783)
+++ .|+..+|...+.+=|.-+
T Consensus 169 rTlllcG~PNVGKSSf~~~vtradvev 195 (620)
T KOG1490|consen 169 RTLLVCGYPNVGKSSFNNKVTRADDEV 195 (620)
T ss_pred CeEEEecCCCCCcHhhccccccccccc
Confidence 332 377778988888777654
No 16
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=56.40 E-value=1.3e+02 Score=25.97 Aligned_cols=67 Identities=21% Similarity=0.225 Sum_probs=53.2
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 003959 99 TDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRL 165 (783)
Q Consensus 99 ~~le~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~L 165 (783)
+++|..+.+.-+.-...|-.+.......+.++-.....+-..-..|+.+....+.+...|.++-++|
T Consensus 2 teLE~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 2 TELEKQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678888888888888888888888888888888888887777788888888877777777766655
No 17
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=55.64 E-value=1.2e+02 Score=33.97 Aligned_cols=92 Identities=12% Similarity=0.233 Sum_probs=69.7
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003959 103 LAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSK 182 (783)
Q Consensus 103 ~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~ 182 (783)
..+..+...+|..+.+.|......=+.|+.++..+-..|.... ..+...++.=......|..--....++...+.+-
T Consensus 236 e~lf~~eL~k~~~~~~~l~~~~~~Q~~ll~~i~~an~~f~~~r---~~~~~~~~~Re~~l~~L~~ay~~y~el~~~l~eG 312 (337)
T cd09234 236 EDLFKEELKKHDQLVNLIEQNLAAQENILKALTEANAKYAPVR---KALSETKQKRESTISSLIASYEAYEDLLKKSQKG 312 (337)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3455666678999999999999888999988888777775442 2224445555566666666667778999999999
Q ss_pred ccchhhHHHHHHhhC
Q 003959 183 LKYFDELENIAASFY 197 (783)
Q Consensus 183 L~yF~~Ld~itr~L~ 197 (783)
++||+.|..+..+|.
T Consensus 313 ~~FY~dL~~~v~~~~ 327 (337)
T cd09234 313 IDFYKKLEGNVSKLL 327 (337)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988774
No 18
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=53.59 E-value=87 Score=35.16 Aligned_cols=96 Identities=19% Similarity=0.289 Sum_probs=71.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003959 102 ELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNEL---QLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEA 178 (783)
Q Consensus 102 e~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L---~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~ 178 (783)
+..+..+.-.+|.-+.+.|......=+.|+.++...-+.|... ..........++.=....++|-.--....++...
T Consensus 248 ~e~lF~~eL~kf~p~~~~l~~~~~~Q~~ll~el~~~~~~f~~~~~~~~~~~~~~~~~~~R~~~l~~l~~ay~~y~el~~~ 327 (356)
T cd09237 248 EKQLFPEELEKFKPLQNRLEATIFKQSSLINELKIELDKLFKLPGVKEKQSKEKSKQKLRKEFFEKLKKAYNSFKKFSAG 327 (356)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5556666677899999999999999899998888877766433 2222223445555566666776666778899999
Q ss_pred HHhcccchhhHHHHHHhhC
Q 003959 179 VQSKLKYFDELENIAASFY 197 (783)
Q Consensus 179 I~~~L~yF~~Ld~itr~L~ 197 (783)
+..-++||+.|-.+...|.
T Consensus 328 l~~G~~FY~dL~~~~~~l~ 346 (356)
T cd09237 328 LPKGLEFYDDLLKMAKDLA 346 (356)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988874
No 19
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=53.35 E-value=2.2e+02 Score=27.63 Aligned_cols=66 Identities=17% Similarity=0.258 Sum_probs=43.3
Q ss_pred hHHHHhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 003959 91 TNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACD 163 (783)
Q Consensus 91 ~~~F~~w~~~le~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce 163 (783)
..+|.+++..++..+.+--.++|.. +...+..+..++..++++-+.+..| ...+.+-.+.|+...+
T Consensus 42 ~~~f~~~~~~~~~~L~~vV~eh~q~----Fn~sI~sy~~i~~~i~~sq~~i~~l---K~~L~~ak~~L~~~~~ 107 (142)
T PF04048_consen 42 YQEFEELKKRIEKALQEVVNEHYQG----FNSSIGSYSQILSSISESQERIREL---KESLQEAKSLLGCRRE 107 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCH
Confidence 5789999999999998877777765 4555556666777777777666666 3333333444433333
No 20
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=51.97 E-value=2.9e+02 Score=28.55 Aligned_cols=80 Identities=16% Similarity=0.217 Sum_probs=72.2
Q ss_pred hHHHHhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 003959 91 TNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQ 170 (783)
Q Consensus 91 ~~~F~~w~~~le~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~ 170 (783)
...--+|....+.++....++.-+.++.....+......+-.+++.....+..|..++.....+...+....+.|.....
T Consensus 64 ~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~ 143 (221)
T PF04012_consen 64 EEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAREN 143 (221)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555699999999999999999999999999999999999999999999999999999999999999999998775554
No 21
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=51.24 E-value=5.1e+02 Score=31.17 Aligned_cols=140 Identities=14% Similarity=0.203 Sum_probs=70.6
Q ss_pred ChHHHHhhHHHHHHHHhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 003959 90 NTNQFYNWFTDLELAMKSETEEKYR---HYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLV 166 (783)
Q Consensus 90 ~~~~F~~w~~~le~~~~~~~~~~y~---~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll 166 (783)
+..+.-.|.+.|+..+..-..+.+. ............++.++.++....+.++++.+. .+ .+.+...-....
T Consensus 8 ~~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~--~~---~~~i~~~l~~a~ 82 (593)
T PF06248_consen 8 SKEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQS--EI---ENEIQPQLRDAA 82 (593)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh--hc---cchhHHHHHHHH
Confidence 3456667888888877666665542 233355556667777777777777777655433 01 122233333333
Q ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHHHHHHhhh--CCCCcChHHH
Q 003959 167 IEKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEG--NPQYAESSVY 234 (783)
Q Consensus 167 ~eq~~L~~~ae~I~~~L~yF~~Ld~itr~L~sp~~~V~~~~F~~~L~~lD~ci~Fl~~--hp~fkda~~Y 234 (783)
.+...|..-.+....-+.--..|..|-..|.+-...+...+|......|++.=.-|.. .+.+.+..+|
T Consensus 83 ~e~~~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~ 152 (593)
T PF06248_consen 83 EELQELKRELEENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDDLKSSKFEELKIL 152 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcCcccccHHH
Confidence 3333333322322233333333333333333222234566777655555555444554 4567675554
No 22
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=50.45 E-value=1.6e+02 Score=25.23 Aligned_cols=59 Identities=10% Similarity=0.337 Sum_probs=33.0
Q ss_pred ChHHHHhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003959 90 NTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAV 151 (783)
Q Consensus 90 ~~~~F~~w~~~le~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V 151 (783)
...+|..|....+..+.+... -.-++.+......+..+..++...-..++.+...-..+
T Consensus 9 ~~~~l~~Wl~~~e~~l~~~~~---~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L 67 (105)
T PF00435_consen 9 EADELLDWLQETEAKLSSSEP---GSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQL 67 (105)
T ss_dssp HHHHHHHHHHHHHHHHCSCTH---SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999843322 11223344444455555555555555555554444444
No 23
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=49.13 E-value=4.7e+02 Score=30.12 Aligned_cols=94 Identities=19% Similarity=0.162 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHH-HHHHHHHHhcccchhhHHHHHHhhCCCCC---------cc---CCccHHHHHHHHHHHHHHhhhCC-
Q 003959 161 ACDRLVIEKQRL-IEFAEAVQSKLKYFDELENIAASFYSPNM---------NV---GNGNFFHLLKRLDECILYVEGNP- 226 (783)
Q Consensus 161 ~ce~Ll~eq~~L-~~~ae~I~~~L~yF~~Ld~itr~L~sp~~---------~V---~~~~F~~~L~~lD~ci~Fl~~hp- 226 (783)
.-+.++.+...| .++|+-+.+-=+||+.=-...+-..+... .| +...-..++..|.+.+.=|+++.
T Consensus 193 ~~~~i~~~l~~le~ema~lL~sLt~HfDqC~~a~~~~eg~~~~~~e~~e~l~Vl~~Da~El~~V~~el~~~~~~~~~~~~ 272 (412)
T PF04108_consen 193 LMSTILKELHSLEQEMASLLESLTNHFDQCVTAVRHTEGEPMSEEERQEMLEVLENDAQELPDVVKELQERLDEMENNEE 272 (412)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 335555555555 56788888888899988888776644211 12 34457778888888888887653
Q ss_pred C----CcChHHHHHHHHHHHHHHHHHHHHHHH
Q 003959 227 Q----YAESSVYLLKFRQLQSRALGMIRSHVL 254 (783)
Q Consensus 227 ~----fkda~~Y~~rfkqcltRAl~LIr~~~~ 254 (783)
. ..+...........+..++..++.+-.
T Consensus 273 ~~~k~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 304 (412)
T PF04108_consen 273 RTKKLLQSQRDHIRELYNALSEALEELRKFGE 304 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 333334444444444445444444433
No 24
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=47.33 E-value=1.2e+02 Score=33.78 Aligned_cols=88 Identities=13% Similarity=0.215 Sum_probs=58.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 003959 106 KSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKY 185 (783)
Q Consensus 106 ~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~y 185 (783)
..+.-.+|..+.+.|......=+.|+.++...-..|..+... ...++.=+..-.+|-.--....++...+.+-++|
T Consensus 242 F~~eL~kf~~~~~~v~~~~~~Q~~ll~~i~~~n~~f~~~~~~----~~~~~~re~~l~~L~~ay~~y~el~~~l~eG~kF 317 (339)
T cd09238 242 FKEELKKYDSVREAVSKNISSQDDLLSRLRALNEKFSQIFDV----EGWRAATESHATQIRAAVAKYRELREGMEEGLRF 317 (339)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----chhHHHHHHHHHHHHHHHHHHHHHHHchHHHHHH
Confidence 334456788888888888888888888888877777654322 1111111222233333334556888899999999
Q ss_pred hhhHHHHHHhhC
Q 003959 186 FDELENIAASFY 197 (783)
Q Consensus 186 F~~Ld~itr~L~ 197 (783)
|+.|-.+..+|.
T Consensus 318 Y~dL~~~~~~l~ 329 (339)
T cd09238 318 YSGFQEAVRRLK 329 (339)
T ss_pred HHHHHHHHHHHH
Confidence 999998888773
No 25
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=47.08 E-value=3.9e+02 Score=33.16 Aligned_cols=83 Identities=16% Similarity=0.241 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhhCCCCCccCC
Q 003959 126 TCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGN 205 (783)
Q Consensus 126 ~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~L~sp~~~V~~ 205 (783)
+...+-.+.+.=++.+.++.+.-..+.++...|.+.+++..+.|+.|.+-++.+-..+. -..|.++..-
T Consensus 566 rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~-----------~~~P~LS~AE 634 (717)
T PF10168_consen 566 RVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLN-----------SQLPVLSEAE 634 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------ccCCCCCHHH
Confidence 34445556666778888888888999999999999999999999888877666543321 1347666556
Q ss_pred ccHHHHHHHHHHHH
Q 003959 206 GNFFHLLKRLDECI 219 (783)
Q Consensus 206 ~~F~~~L~~lD~ci 219 (783)
..|..-|+++.+-+
T Consensus 635 r~~~~EL~~~~~~l 648 (717)
T PF10168_consen 635 REFKKELERMKDQL 648 (717)
T ss_pred HHHHHHHHHHHHHH
Confidence 67777777777655
No 26
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=45.42 E-value=5.3e+02 Score=29.68 Aligned_cols=88 Identities=17% Similarity=0.270 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchh
Q 003959 109 TEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQ-HHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFD 187 (783)
Q Consensus 109 ~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~-~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~ 187 (783)
+.+.|...++-|..--.+.++++..+.+.++.+...... ...+.++...+...+..+...-..|.++.+.+++++.-|.
T Consensus 235 ~~~e~~e~l~Vl~~Da~El~~V~~el~~~~~~~~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~yl~~~~ 314 (412)
T PF04108_consen 235 SEEERQEMLEVLENDAQELPDVVKELQERLDEMENNEERTKKLLQSQRDHIRELYNALSEALEELRKFGERLPSYLAAFH 314 (412)
T ss_pred ChHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335556666666666666666666666666666655444 2225555556666666666566666666666666666666
Q ss_pred hHHHHHHhh
Q 003959 188 ELENIAASF 196 (783)
Q Consensus 188 ~Ld~itr~L 196 (783)
.++.+....
T Consensus 315 ~~~~~~~~~ 323 (412)
T PF04108_consen 315 DFEERWEEE 323 (412)
T ss_pred HHHHHHHHH
Confidence 666555443
No 27
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=43.69 E-value=1.9e+02 Score=32.46 Aligned_cols=91 Identities=18% Similarity=0.249 Sum_probs=66.7
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003959 103 LAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSK 182 (783)
Q Consensus 103 ~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~ 182 (783)
..+..+.-.+|.-+.+.|......=+.|+.++...-+.|...... ...++.-..+..+|-.--....++...+.+-
T Consensus 253 e~lf~~eL~kf~~~~~~l~~~~~~Q~~ll~~i~~~n~~f~~~~~~----~~~~~~re~~lq~L~~ay~~y~el~~nl~eG 328 (353)
T cd09236 253 EDLFDKRLAKYDKDLDAVSEEAQEQEEILQQIEVANKAFLQSRKG----DPATKERERALQSLDLAYFKYKEIVSNLDEG 328 (353)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455557799999999999888889998888888777543222 2334444555666666667778999999999
Q ss_pred ccchhhHHHHHHhhC
Q 003959 183 LKYFDELENIAASFY 197 (783)
Q Consensus 183 L~yF~~Ld~itr~L~ 197 (783)
++||+.|-.+..+|.
T Consensus 329 ~kFY~dL~~~~~~~~ 343 (353)
T cd09236 329 RKFYNDLAKILSQFR 343 (353)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988887763
No 28
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=42.63 E-value=2.1e+02 Score=25.34 Aligned_cols=32 Identities=9% Similarity=0.150 Sum_probs=11.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 003959 153 TKTKTLHDACDRLVIEKQRLIEFAEAVQSKLK 184 (783)
Q Consensus 153 ~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~ 184 (783)
.+++.+-+..+.-++.-..+.+-+.++++.++
T Consensus 54 ~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~ 85 (90)
T PF06103_consen 54 HNTNELLEDVNEKLEKVDPVFEAVADLGESVS 85 (90)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333444444333
No 29
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=42.36 E-value=4.8e+02 Score=28.27 Aligned_cols=58 Identities=16% Similarity=0.219 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhhhCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003959 211 LLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQAAIR 269 (783)
Q Consensus 211 ~L~~lD~ci~Fl~~hp~fkda~~Y~~rfkqcltRAl~LIr~~~~~~L~~~~~~V~~~l~ 269 (783)
+=+.+..--.||.+||.|++... +.--..|..|--.++-.++.+.|=.+..+|.+++.
T Consensus 33 ~~~a~~~E~~fF~~~~~~~~~~~-~~G~~~L~~~L~~~L~~~I~~~LP~l~~~I~~~l~ 90 (295)
T PF01031_consen 33 IEEARQKEKEFFSNHPWYSSPAD-RCGTPALRKRLSELLVEHIRKSLPSLKSEIQKKLQ 90 (295)
T ss_dssp HHHHHHHHHHHHHHSTTTGGGGG-GSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCCccc-ccchHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 44567788899999999998332 22235565666667777777777777666666554
No 30
>PF11554 DUF3232: Protein of unknown function (DUF3232); InterPro: IPR021618 This bacterial family of proteins has no known function. ; PDB: 2RDC_A.
Probab=42.31 E-value=1.2e+02 Score=29.65 Aligned_cols=86 Identities=20% Similarity=0.317 Sum_probs=48.8
Q ss_pred HHHHhhhCCCCcChHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhhhhhHHHH
Q 003959 218 CILYVEGNPQYAESSVYLLKFRQLQSRA------LGMIRSHVLSVLKSASSQVQAAIRSSGGSKTSVSEGVEASLIYVRF 291 (783)
Q Consensus 218 ci~Fl~~hp~fkda~~Y~~rfkqcltRA------l~LIr~~~~~~L~~~~~~V~~~l~~~~~~~~~~s~~~~~aLlY~kF 291 (783)
-+.|+.+| .|-++.-..||+.+.... +.+|...+.+ ++.-..-|. ..+..+.+.||
T Consensus 8 ~~~~~~~~--~~~~~~~~~rf~~v~~~~~~D~~~l~liE~~ids-~~~Y~~~V~---------------~mE~~l~t~rf 69 (152)
T PF11554_consen 8 VVSFVSSH--HKGSEETMNRFKRVISITKDDEDALDLIEELIDS-FKEYVLIVY---------------RMEDQLQTWRF 69 (152)
T ss_dssp -------------TTSHHHHHHHHHHHHTTSHHHHHHHHHHHHH-HHHHHHHHH---------------HHHHHHHHHCC
T ss_pred HHHHHHHH--HhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHHHHHHHH---------------HHHHHHHHHHH
Confidence 34565554 466777788888766544 4444443332 222222121 12457889999
Q ss_pred HHHHHhHHHHHHHHHhhhChhHHhHHHHHHH
Q 003959 292 KAAASELKPVLEEIESRSSKKEYVQILEECH 322 (783)
Q Consensus 292 ~~~a~~l~~Li~eie~R~~~~Ey~slL~dc~ 322 (783)
+--++.+|.+++++.++- +..+.+++++|+
T Consensus 70 rlegeeYRd~vE~LDr~R-tnaH~a~ISd~k 99 (152)
T PF11554_consen 70 RLEGEEYRDLVEELDRTR-TNAHNAAISDCK 99 (152)
T ss_dssp TS-HHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 999999999999999653 457788888887
No 31
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=40.71 E-value=1.6e+02 Score=36.22 Aligned_cols=102 Identities=17% Similarity=0.289 Sum_probs=59.1
Q ss_pred hhccChHHHHhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHhh
Q 003959 86 AVLVNTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQH-----------HAVATK 154 (783)
Q Consensus 86 ~~i~~~~~F~~w~~~le~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~-----------~~V~~k 154 (783)
+.+..+.++.+||.+=-.. +..|...+ +.+|.++..|..|-+.| .... .
T Consensus 33 a~~~~~~qi~~Wi~k~k~~------------l~~L~~~l-------~~ID~ai~~~l~lIe~~v~~ie~~q~r~di~~-~ 92 (683)
T PF08580_consen 33 ALSGAAEQILDWIQKAKDV------------LYGLREGL-------EEIDSAISRFLDLIEVYVSAIEDLQLREDIAN-S 92 (683)
T ss_pred hhHHHHHHHHHHHHHHHHH------------HHHHHHhH-------HHHHHHHHHHHHHHHhhccccccccccccccc-c
Confidence 4455678899998653332 23333333 34444444444444443 3333 5
Q ss_pred hhHHHHHHHHHHH-HHHHHHHHHHHHHhcccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHHHHHHh
Q 003959 155 TKTLHDACDRLVI-EKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYV 222 (783)
Q Consensus 155 T~~l~~~ce~Ll~-eq~~L~~~ae~I~~~L~yF~~Ld~itr~L~sp~~~V~~~~F~~~L~~lD~ci~Fl 222 (783)
.-++.+.|.+|+. =+..|..+-+.+.--+.|.+-.+.+ ...+-..||+|+.-+
T Consensus 93 ~~dl~e~vsqm~~~vK~~L~~vK~qveiAmE~~EL~~~v---------------lg~l~~EIe~~~~~v 146 (683)
T PF08580_consen 93 LFDLIEEVSQMELDVKKTLISVKKQVEIAMEWEELWNDV---------------LGDLDNEIEECIRLV 146 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---------------HHHHHHHHHHHHHHH
Confidence 7789999999987 3444555555555555555444433 345667888888765
No 32
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=40.43 E-value=2.7e+02 Score=32.37 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=55.4
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 003959 111 EKYRHYVN-TLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKL 183 (783)
Q Consensus 111 ~~y~~y~~-~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L 183 (783)
+.+..|.+ +|+.....+...+...++.-...+++......|+.+-..++..-+++-.|.+.+.+.-..+.+++
T Consensus 339 ~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq 412 (493)
T KOG0804|consen 339 QIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQ 412 (493)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34445555 88888888999998888888888888888888888888888877777777776665555554443
No 33
>COG1084 Predicted GTPase [General function prediction only]
Probab=40.20 E-value=2e+02 Score=32.24 Aligned_cols=102 Identities=16% Similarity=0.230 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH
Q 003959 112 KYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELEN 191 (783)
Q Consensus 112 ~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~ 191 (783)
=|+...|-|-+ ++++..-|..++.+-..++.+...|-.-.....+..++.+=.=+--.|...+.+.|+..|.|-...-.
T Consensus 78 FY~eLidvl~d-~d~~k~sLs~v~~A~~~i~~l~~eYi~~lk~a~~~~~~~~lrR~a~GR~aSiik~i~~~L~fL~~~r~ 156 (346)
T COG1084 78 FYRELIDVLVD-IDHLKISLSAVSWASKIIEKLAREYIRLLKAAKDPKEANQLRRQAFGRVASIIKKIDDDLEFLRKARD 156 (346)
T ss_pred HHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34555555543 34777788889999999999999998888777776654443334457888999999999999999998
Q ss_pred HHHhhC-----CCCC------ccCCccHHHHHHH
Q 003959 192 IAASFY-----SPNM------NVGNGNFFHLLKR 214 (783)
Q Consensus 192 itr~L~-----sp~~------~V~~~~F~~~L~~ 214 (783)
.+++|- .|+. +|+..+|...+.+
T Consensus 157 ~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~ 190 (346)
T COG1084 157 HLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTT 190 (346)
T ss_pred HHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhc
Confidence 888883 4443 3666667665543
No 34
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=38.78 E-value=44 Score=32.00 Aligned_cols=104 Identities=13% Similarity=0.226 Sum_probs=35.3
Q ss_pred hhccC-hHHHHhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 003959 86 AVLVN-TNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDR 164 (783)
Q Consensus 86 ~~i~~-~~~F~~w~~~le~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~ 164 (783)
.++++ -.++-.+...+..++.+---..|..|+. |.++....++.+ +.+..-+..+...-..|.+.-..-.+..+.
T Consensus 26 ~~Le~L~~dL~~~~~~L~~~Li~lIN~dY~dFv~-Ls~~L~g~~~~i---~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~ 101 (133)
T PF06148_consen 26 VSLEDLRKDLRSYSKELKNELIELINDDYADFVS-LSTNLVGMDEKI---EELRKPLSQFREEVESVRDELDNTQEEIED 101 (133)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHHHHHS-STTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHccHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555 4677778889999998888888888877 666665555544 444555556666666777777777888888
Q ss_pred HHHHHHHHHHHHHHHHhcccchhhHHHHH
Q 003959 165 LVIEKQRLIEFAEAVQSKLKYFDELENIA 193 (783)
Q Consensus 165 Ll~eq~~L~~~ae~I~~~L~yF~~Ld~it 193 (783)
.+.+++++.+.-..++..+.+.+.++.+-
T Consensus 102 ~l~~~~~l~~~k~~l~~~l~~~~~~~kle 130 (133)
T PF06148_consen 102 KLEERKELREEKALLKLLLDISESLEKLE 130 (133)
T ss_dssp HHHHHHHHHHHHHT-SSSSHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 88888888887777776666666665543
No 35
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=38.77 E-value=7.2e+02 Score=29.30 Aligned_cols=56 Identities=13% Similarity=0.109 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhcccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHHHHHHhhhCCCC
Q 003959 169 KQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQY 228 (783)
Q Consensus 169 q~~L~~~ae~I~~~L~yF~~Ld~itr~L~sp~~~V~~~~F~~~L~~lD~ci~Fl~~hp~f 228 (783)
-..+.+-.++-..+.+|+..|+++...|.+.. -.+..+.+..|=.+|..+-.|+.|
T Consensus 85 ~~~l~~~~~ea~d~~~fL~~l~~~~~~l~~~~----~~~i~~~i~~l~~~l~~iw~~S~~ 140 (579)
T PF08385_consen 85 TRELKEALNEAKDNNKFLKPLEPPFELLEASD----LSEIQESIPPLFHHLRLIWRISRY 140 (579)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC----HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 33556777888889999999999999995532 234555666666667667777764
No 36
>PRK09039 hypothetical protein; Validated
Probab=38.39 E-value=6.2e+02 Score=28.43 Aligned_cols=132 Identities=14% Similarity=0.077 Sum_probs=78.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH----HHHHHHHHHHHHHHHH
Q 003959 108 ETEEKYRHYVNTLMGRIQTCDDIL----RQVDGTLDLFNELQLQHHAVATKTKTLHDACD----RLVIEKQRLIEFAEAV 179 (783)
Q Consensus 108 ~~~~~y~~y~~~L~~~~~~~d~ll----~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce----~Ll~eq~~L~~~ae~I 179 (783)
++-+....-+++|...+...-.+| +.....-..+.+|+.+|......=..+..+-+ ..-..+.++..+.+++
T Consensus 46 ~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L 125 (343)
T PRK09039 46 REISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQEL 125 (343)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHH
Confidence 333444455555555555544444 22333344444444445444433333333322 2233466677777777
Q ss_pred HhcccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHHHHHHhhhCCCCcChHHHHHHHHHHHHHHH
Q 003959 180 QSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRAL 246 (783)
Q Consensus 180 ~~~L~yF~~Ld~itr~L~sp~~~V~~~~F~~~L~~lD~ci~Fl~~hp~fkda~~Y~~rfkqcltRAl 246 (783)
.+-..-|++--+-..+|++--. .-..-|..|+..|+..+..- +++...+..+++-+..|+
T Consensus 126 ~~~k~~~se~~~~V~~L~~qI~-----aLr~Qla~le~~L~~ae~~~--~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 126 DSEKQVSARALAQVELLNQQIA-----ALRRQLAALEAALDASEKRD--RESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHhhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 7777777777777777765322 22334999999999998766 888888888888777776
No 37
>smart00150 SPEC Spectrin repeats.
Probab=36.45 E-value=2.7e+02 Score=23.73 Aligned_cols=91 Identities=13% Similarity=0.248 Sum_probs=47.7
Q ss_pred ChHHHHhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHH
Q 003959 90 NTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVAT----KTKTLHDACDRL 165 (783)
Q Consensus 90 ~~~~F~~w~~~le~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~----kT~~l~~~ce~L 165 (783)
+..++.+|....+..+.+... -.-++.+....+.++.+..+++.....++.+...-..+.+ ....+...++.|
T Consensus 6 ~~~~l~~Wl~~~e~~l~~~~~---~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~~~~~~~~i~~~~~~l 82 (101)
T smart00150 6 DADELEAWLSEKEALLASEDL---GKDLESVEALLKKHEALEAELEAHEERVEALNELGEQLIEEGHPDAEEIEERLEEL 82 (101)
T ss_pred HHHHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 467888999999966644322 1234445555555555555554444444444444333332 233455555555
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 003959 166 VIEKQRLIEFAEAVQSKL 183 (783)
Q Consensus 166 l~eq~~L~~~ae~I~~~L 183 (783)
-..-..|...++.-...|
T Consensus 83 ~~~w~~l~~~~~~r~~~L 100 (101)
T smart00150 83 NERWEELKELAEERRQKL 100 (101)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 555555555555444433
No 38
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=36.16 E-value=9.7e+02 Score=30.03 Aligned_cols=170 Identities=18% Similarity=0.254 Sum_probs=94.8
Q ss_pred cHHHHHHHHHHHHHHhhhCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhhhh
Q 003959 207 NFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQAAIRSSGGSKTSVSEGVEASL 286 (783)
Q Consensus 207 ~F~~~L~~lD~ci~Fl~~hp~fkda~~Y~~rfkqcltRAl~LIr~~~~~~L~~~~~~V~~~l~~~~~~~~~~s~~~~~aL 286 (783)
....-|..+-.||.=+..=|+|.|...-+..++.= --.+++--++..|. .. ..
T Consensus 148 ~~a~~l~~m~~sL~~l~~~pd~~~r~~~le~l~nr---LEa~vsp~Lv~al~-----------~~---------~~---- 200 (766)
T PF10191_consen 148 KIADRLAEMQRSLAVLQDVPDYEERRQQLEALKNR---LEALVSPQLVQALN-----------SR---------DV---- 200 (766)
T ss_pred HHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHH---HHHHhhHHHHHHHH-----------hc---------CH----
Confidence 35567888888888888888887765555544432 22233333332222 10 01
Q ss_pred hHHHHHHHHHhHHHHHHHHHhhhChhHHhHHHHHHHHHHHHHHhhhhhHHHHHHHHhHhcc---CCchhhHHhHHHHHHH
Q 003959 287 IYVRFKAAASELKPVLEEIESRSSKKEYVQILEECHKLYCEQRLSLVKGIVQQRISEFSKK---ETLPSLTRSGCAYLMQ 363 (783)
Q Consensus 287 lY~kF~~~a~~l~~Li~eie~R~~~~Ey~slL~dc~~~Yf~~R~~LL~p~i~~~l~e~~~~---~~l~~l~r~~~~~l~~ 363 (783)
..+..+..++..|.+ +.+..+.|+.+|.. |+.+.| .+.... .+......+-+..+..
T Consensus 201 ------~~~~~~~~if~~i~R----------~~~l~~~Y~~~r~~---~l~~~W-~~~~~~~~~~~~~~~L~~fyd~ll~ 260 (766)
T PF10191_consen 201 ------DAAKEYVKIFSSIGR----------EPQLEQYYCKCRKA---PLQRLW-QEYCQSDQSQSFAEWLPSFYDELLS 260 (766)
T ss_pred ------HHHHHHHHHHHHcCC----------HHHHHHHHHHHHHH---HHHHHH-HHHhhhccchhHHHHHHHHHHHHHH
Confidence 122233344444422 34567889999985 555555 333322 3577777888888899
Q ss_pred HHHHHHHhhcccCCCCcc-chhchhhhHHHHHHHHHHhhcccccc-cC--CHHHHHHHHHHHHH
Q 003959 364 VCQLEHQLFDHFFPSSSE-DISSLAPLIDPLSTFLYDILRPKLIH-ET--NVDLLCELVDILKV 423 (783)
Q Consensus 364 ~C~~E~~Lf~~FF~~~~~-~~~~l~~~le~Lc~~LYd~lRp~Ii~-e~--~L~~Lcel~~iL~~ 423 (783)
.++.|.+-..+.||.+.. -...+.+.|..|.-.+...+.-.+-. .+ .++.|+++-.+-..
T Consensus 261 ~l~~E~~w~~~vF~~~~~~~~~ll~~~L~~L~PS~~~~l~~al~~~~~~~~L~~L~~l~~~t~~ 324 (766)
T PF10191_consen 261 LLHQELKWCSQVFPDESPVLPKLLAETLSALQPSFPSRLSSALKRAGPETKLETLIELYQATEH 324 (766)
T ss_pred HHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCccHHHHHHHHHhhcCchhhHHHHHHHHHHHHH
Confidence 999999999999988641 00123333444333333333333211 12 27777776655443
No 39
>PHA03386 P10 fibrous body protein; Provisional
Probab=32.90 E-value=2e+02 Score=26.19 Aligned_cols=54 Identities=22% Similarity=0.202 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 003959 127 CDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLK 184 (783)
Q Consensus 127 ~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~ 184 (783)
+-.|++++.+.-+.++.|+.+-..|.+++..|....++| ..+......|++.|.
T Consensus 7 Ll~Ir~dIkavd~KVdaLQ~qV~dv~~n~~~LDa~~~qL----~~l~tkV~~Iq~iLn 60 (94)
T PHA03386 7 LTQILDAVQEVDTKVDALQTQLNGLEEDSQPLDGLPAQL----TELDTKVSDIQSILT 60 (94)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcchhhhhHHHHH----HHHHHHHHHHHHhcC
Confidence 445778888888888888888888888888888888877 345555555555554
No 40
>PF01865 PhoU_div: Protein of unknown function DUF47; InterPro: IPR018445 This family includes prokaryotic proteins of unknown function, as well as a protein annotated as the pit accessory protein from Rhizobium meliloti (Sinorhizobium meliloti) (O30498 from SWISSPROT). However, the function of this protein is also unknown (Pit stands for Phosphate transport) [].; PDB: 2OLT_C 2IIU_C 3L39_A.
Probab=32.28 E-value=5.6e+02 Score=26.12 Aligned_cols=54 Identities=20% Similarity=0.397 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhhCCCCCc-cCCccHHHHHHHHHHHHHHhhh
Q 003959 162 CDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMN-VGNGNFFHLLKRLDECILYVEG 224 (783)
Q Consensus 162 ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~L~sp~~~-V~~~~F~~~L~~lD~ci~Fl~~ 224 (783)
.+.++.+-..++.-|+.|... |...|+...+. +.++++..+...+|..+++++.
T Consensus 42 ~~~~~~~i~~lE~~aD~i~~~---------i~~~L~~~fitP~dRedi~~L~~~lD~I~d~i~~ 96 (214)
T PF01865_consen 42 VEELLEEIKELEHEADEIKRE---------IREELYKSFITPFDREDILRLISSLDDIADYIED 96 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------HHHHHHH-SS-SS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 455555556677777776654 45556554333 5788999999999999999974
No 41
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=31.88 E-value=3e+02 Score=25.02 Aligned_cols=58 Identities=17% Similarity=0.222 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 003959 126 TCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKL 183 (783)
Q Consensus 126 ~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L 183 (783)
.|+.|=..+..+-..++.|..-+...-..+.......++|-.....-..++.+|...|
T Consensus 9 ~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l 66 (117)
T smart00503 9 KVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKL 66 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443333223333334333344444444444433
No 42
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=31.43 E-value=3.3e+02 Score=25.11 Aligned_cols=62 Identities=13% Similarity=0.242 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 003959 110 EEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRL 172 (783)
Q Consensus 110 ~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L 172 (783)
.+.++.|.......-.++..|-..++++...|.+|...-......+....... +++.|=.++
T Consensus 7 ~eqR~~Yk~eF~~~y~EYk~L~~~v~~v~~~f~~L~~~l~~l~~~s~ey~~i~-~I~~eY~k~ 68 (101)
T PF07303_consen 7 SEQRQRYKAEFNDDYDEYKELHAEVDAVSRRFQELDSELKRLPPGSQEYKRIA-QILQEYNKK 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-TTSHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHH-HHHHHHHHH
Confidence 45667788888888888888888889999999999888888888888887777 777666665
No 43
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=29.65 E-value=4.5e+02 Score=29.36 Aligned_cols=83 Identities=11% Similarity=0.259 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH
Q 003959 112 KYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELEN 191 (783)
Q Consensus 112 ~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~ 191 (783)
+|..+.++|......=+.|+.++..+-..|.... .+...++.=.....+|-.--....++...+.+-++||+.|-.
T Consensus 248 ~f~~~~~~i~~~~~~Q~~ll~~i~~~n~~f~~~~----~~~~~~~~re~~lq~L~~Ay~~y~el~~nl~eG~kFY~dL~~ 323 (339)
T cd09235 248 VYGPLQKQVQESLSRQESLLANIQVAHQEFSKEK----QSNSGANEREEVLKDLAAAYDAFMELTANLKEGTKFYNDLTE 323 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4888888888888888888888877776664321 112222333455555555556677899999999999999998
Q ss_pred HHHhhCC
Q 003959 192 IAASFYS 198 (783)
Q Consensus 192 itr~L~s 198 (783)
+..+|..
T Consensus 324 ~~~~~~~ 330 (339)
T cd09235 324 ILVKFQN 330 (339)
T ss_pred HHHHHHH
Confidence 8887743
No 44
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=29.01 E-value=6.7e+02 Score=26.91 Aligned_cols=77 Identities=17% Similarity=0.231 Sum_probs=40.9
Q ss_pred HhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 003959 95 YNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIE 174 (783)
Q Consensus 95 ~~w~~~le~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~ 174 (783)
.+|-.+++.+ ++.|..+..+++.+- ..|=... ..+..|-..-..|...-+-|+..-+-++..|+.|+.
T Consensus 81 NkWs~el~~Q-----e~vF~~q~~qvNaWD----r~LI~ng---ekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~ 148 (254)
T KOG2196|consen 81 NKWSLELEEQ-----ERVFLQQATQVNAWD----RTLIENG---EKISGLYNEVVKVKLDQKRLDQELEFILSQQQELED 148 (254)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHhHHH----HHHHhCc---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3577777654 566777777766554 3331111 123334334444555555566666666666666655
Q ss_pred HHHHHHhcc
Q 003959 175 FAEAVQSKL 183 (783)
Q Consensus 175 ~ae~I~~~L 183 (783)
+-..+++.+
T Consensus 149 ~L~~lE~k~ 157 (254)
T KOG2196|consen 149 LLDPLETKL 157 (254)
T ss_pred HHHHHHHHH
Confidence 544444433
No 45
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=28.78 E-value=4.9e+02 Score=30.93 Aligned_cols=78 Identities=13% Similarity=0.233 Sum_probs=43.8
Q ss_pred cChHHHHhhHHHHHHHHhhhhHHHHH---------HHHHHHHHH----HHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 003959 89 VNTNQFYNWFTDLELAMKSETEEKYR---------HYVNTLMGR----IQTCDDIL-------RQVDGTLDLFNELQLQH 148 (783)
Q Consensus 89 ~~~~~F~~w~~~le~~~~~~~~~~y~---------~y~~~L~~~----~~~~d~ll-------~~~~~~l~~l~~L~~~~ 148 (783)
.+..+.-.|.+.++.-+..=+...-+ .|++.|... ...++.+. .+..++...+.++.-.-
T Consensus 397 ~t~~~i~~ml~~V~~ii~~Lt~~~~~~L~~Ik~SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL 476 (507)
T PF05600_consen 397 QTAESIEEMLSAVEEIISQLTNPRTQHLFMIKSSPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKL 476 (507)
T ss_pred cCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 46777888998888776544443322 344444333 22232222 33445555566666666
Q ss_pred HHHHhhhhHHHHHHHHHH
Q 003959 149 HAVATKTKTLHDACDRLV 166 (783)
Q Consensus 149 ~~V~~kT~~l~~~ce~Ll 166 (783)
..+.++|+.|+..||.-+
T Consensus 477 ~~l~~~Tr~Lq~~iE~~I 494 (507)
T PF05600_consen 477 DALVERTRELQKQIEADI 494 (507)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666666544
No 46
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=28.12 E-value=3.6e+02 Score=26.93 Aligned_cols=15 Identities=0% Similarity=0.200 Sum_probs=7.2
Q ss_pred hHHHHhhHHHHHHHH
Q 003959 91 TNQFYNWFTDLELAM 105 (783)
Q Consensus 91 ~~~F~~w~~~le~~~ 105 (783)
+.+.-.+...+...+
T Consensus 95 ~~~I~~~i~~i~~~~ 109 (213)
T PF00015_consen 95 AKEISEIIEEIQEQI 109 (213)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhh
Confidence 344444555555543
No 47
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=27.93 E-value=5.4e+02 Score=24.55 Aligned_cols=46 Identities=9% Similarity=0.140 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhcccchhhHH---------HHHHhhCCCCCccCCccHHHHHHH
Q 003959 169 KQRLIEFAEAVQSKLKYFDELE---------NIAASFYSPNMNVGNGNFFHLLKR 214 (783)
Q Consensus 169 q~~L~~~ae~I~~~L~yF~~Ld---------~itr~L~sp~~~V~~~~F~~~L~~ 214 (783)
+.....+......-+.-|..+. .+.|++.-.+..++.+....++..
T Consensus 87 ~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~Rq~~i~~~~~tdeei~~~~~~ 141 (151)
T cd00179 87 KTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQRQLEITGGEATDEELEDMLES 141 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHc
Confidence 3444556666666666776666 444555433334566666666664
No 48
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=27.92 E-value=2.2e+02 Score=29.97 Aligned_cols=58 Identities=19% Similarity=0.200 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 003959 120 LMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAE 177 (783)
Q Consensus 120 L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae 177 (783)
.+...+....+-+++.+.-..++..+.+...+..+...+....++|++|-.+|.+-.+
T Consensus 153 ~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 153 NDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 4444555666666777777777777777777777777777777777777666655444
No 49
>cd08816 CARD_RIG-I_1 Caspase activation and recruitment domain found in RIG-I, first repeat. Caspase activation and recruitment domain (CARD) found in RIG-I (Retinoic acid Inducible Gene I, also known as Ddx58), first repeat. RIG-I is a cytoplasmic RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. RIG-I contains two N-terminal CARD domains and a C-terminal RNA helicase. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I recognizes different sets of viruses compared to MDA5, a related RNA helicase. RIG-I associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction doma
Probab=27.83 E-value=1.2e+02 Score=27.22 Aligned_cols=66 Identities=20% Similarity=0.256 Sum_probs=44.2
Q ss_pred hhhHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhhhhhcchhhhhchHHHHHHHHHHHHHHHHHHH
Q 003959 387 APLIDPLSTFLYDILRPKLIHETNVDLLCELVDILKVEVLGEQLSRRSESLAGLRPTLERILADVHERLTFRA 459 (783)
Q Consensus 387 ~~~le~Lc~~LYd~lRp~Ii~e~~L~~Lcel~~iL~~e~l~e~~~~~~~~~~~~~~~~~~lLqD~QeRLifRa 459 (783)
...|+.+.+.+=++|||-.| |.-+.++|..++.+-...++.+....-..+|..-|+..|++=+||+
T Consensus 5 k~nL~af~~yi~ktl~P~yI-------l~~m~~~~~~e~v~~I~aEe~kg~~~AaqlfL~~l~~lee~GWFqa 70 (89)
T cd08816 5 KRNLQRFRDYIKKILRPSYI-------LGFMTTWLEDEEVERILSEEEKGVTSAAQLFLDYVLKLEEEGWFQA 70 (89)
T ss_pred HHHHHHHHHHHHHhhchHHH-------HHHHHHhcCHHHHHHHHHHhccChHHHHHHHHHHHHHHccccHHHH
Confidence 35666777778888888755 6778889988764433222223333334567777888999999986
No 50
>KOG1333 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.50 E-value=2.7e+02 Score=29.09 Aligned_cols=35 Identities=29% Similarity=0.503 Sum_probs=27.5
Q ss_pred cccCccHHHHHH-HHHhhhhccchhhhhHHHHHHHH
Q 003959 504 KTWYPPLEKTVS-CLSKLYQCLEQAVFTGLAQEAVE 538 (783)
Q Consensus 504 ~~wYPpl~ktL~-lLSkly~~v~~~VF~~LA~eaV~ 538 (783)
.+|--+.--.|. .||.+|.||+++||-.+-+|+.|
T Consensus 149 ktw~e~~~~sl~Nflst~~qc~p~pvi~~~~~e~ar 184 (241)
T KOG1333|consen 149 KTWIEIYYVSLHNFLSTLFQCMPVPVILNFDAECQR 184 (241)
T ss_pred hhhhHhhhhhHHhHHHHHHHcCCcceeehHHHHHhc
Confidence 456666666666 89999999999999877777644
No 51
>TIGR00153 conserved hypothetical protein TIGR00153. An apparent homolog with a suggested function is Pit accessory protein from Sinorhizobium meliloti, which may be involved in phosphate (Pi) transport.
Probab=26.05 E-value=7.4e+02 Score=25.52 Aligned_cols=84 Identities=13% Similarity=0.112 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhhCCCCCc-cCCccHHHHHHHHHHHHHHhhhCC------CCcCh---
Q 003959 162 CDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMN-VGNGNFFHLLKRLDECILYVEGNP------QYAES--- 231 (783)
Q Consensus 162 ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~L~sp~~~-V~~~~F~~~L~~lD~ci~Fl~~hp------~fkda--- 231 (783)
.+....+-..++.-++.|... |.+.|+...+. +.++++..++..+|+.+++++.=. +....
T Consensus 45 ~~~~~~~I~~lE~eaD~i~~~---------i~~~L~~~fitP~dReDi~~L~~~lD~I~D~i~~~a~~l~l~~~~~~~~l 115 (216)
T TIGR00153 45 DEELRKEIIEIEHEADEIKRE---------IRLNLEKGAFLPNDRRDLLELAELLDEILDSLEHAAMLYELRKFEFPEEL 115 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHhCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHH
Confidence 345566666777777777654 55667664443 788999999999999999998511 11122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003959 232 SVYLLKFRQLQSRALGMIRSHVL 254 (783)
Q Consensus 232 ~~Y~~rfkqcltRAl~LIr~~~~ 254 (783)
.....++-..+.+++..+...+.
T Consensus 116 ~~~~~~l~~~i~~~~~~l~~av~ 138 (216)
T TIGR00153 116 RDEFLLVLKITVDMIQHLHRVVE 138 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555543
No 52
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=25.97 E-value=4.8e+02 Score=27.97 Aligned_cols=158 Identities=15% Similarity=0.218 Sum_probs=83.5
Q ss_pred ChHHHHhhHHH-HH-HHHhhhhH-HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHH
Q 003959 90 NTNQFYNWFTD-LE-LAMKSETE-EKYRHYVNTL-MGRIQTCDDILRQVDGTLDLFNEL-QLQHHAVATKTKTLHDACDR 164 (783)
Q Consensus 90 ~~~~F~~w~~~-le-~~~~~~~~-~~y~~y~~~L-~~~~~~~d~ll~~~~~~l~~l~~L-~~~~~~V~~kT~~l~~~ce~ 164 (783)
....|++||.. |. ..+.++.+ ..|......= --.-+.+|..|+.+...-..+..+ ............++.+.++.
T Consensus 7 e~~~FL~W~c~~V~~~NvLS~~El~~~~~L~~~GkiLeg~~Ld~aL~~~~~~~~~~~~~~e~~le~Le~el~~l~~~~~~ 86 (256)
T PF14932_consen 7 EFESFLDWFCSNVNESNVLSEEELQAFEELQKSGKILEGEALDEALKTISAFSPKLLELEEEDLEALEEELEALQEYKEL 86 (256)
T ss_pred cHHHHHHHHHccCChhccCCHHHHHHHHHHHHcCCcCCHHHHHHHHHHcccccCCccccchHHHHHHHHHHHHHHHHHHH
Confidence 47899999987 43 33333333 3443222100 001223333333322221111111 23445556666667777777
Q ss_pred HHHHHHHHHHHHHHHHhcccchhhHHH-HHHhhCCCCCc--c----CCccHHHHHHHHHHHHHHhhh-C-------C---
Q 003959 165 LVIEKQRLIEFAEAVQSKLKYFDELEN-IAASFYSPNMN--V----GNGNFFHLLKRLDECILYVEG-N-------P--- 226 (783)
Q Consensus 165 Ll~eq~~L~~~ae~I~~~L~yF~~Ld~-itr~L~sp~~~--V----~~~~F~~~L~~lD~ci~Fl~~-h-------p--- 226 (783)
....-+.+..++..+...+...+.... ....+...+.. + .+.....++..+-.-+.++.. | |
T Consensus 87 ~~~~~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~k~~~~l~~l~~~v~~l~~~~~~~~~~~~~~~~~fl 166 (256)
T PF14932_consen 87 YEQLRNKLQQLDSSLSQELSELEGKEEEAQKKLKKAQKELSAECSKLNNELNQLLGEVSKLASELAHAHSGQQQNPPVFL 166 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCchh
Confidence 777777777777778777766555332 33344322211 1 233455666666666666653 2 2
Q ss_pred CCcChHHHHHHHHHHHHHHHHH
Q 003959 227 QYAESSVYLLKFRQLQSRALGM 248 (783)
Q Consensus 227 ~fkda~~Y~~rfkqcltRAl~L 248 (783)
.+-+=+.|+.+-.+| +++|++
T Consensus 167 sq~~l~~Y~~~ee~~-t~~L~~ 187 (256)
T PF14932_consen 167 SQMPLEQYLSQEEQF-TKYLTS 187 (256)
T ss_pred hhCCHHHHHHHHHHH-HHHHHH
Confidence 456788888887777 566653
No 53
>PRK10807 paraquat-inducible protein B; Provisional
Probab=25.86 E-value=5e+02 Score=31.14 Aligned_cols=21 Identities=10% Similarity=0.238 Sum_probs=16.5
Q ss_pred cHHHHHHHHHHHHHHhhhCCC
Q 003959 207 NFFHLLKRLDECILYVEGNPQ 227 (783)
Q Consensus 207 ~F~~~L~~lD~ci~Fl~~hp~ 227 (783)
++..+++.+..=+++|+.||+
T Consensus 508 ~l~~~~r~lr~l~~~L~~~P~ 528 (547)
T PRK10807 508 RLDQVLRELQPVLKTLNEKSN 528 (547)
T ss_pred HHHHHHHHHHHHHHHHHhCch
Confidence 355577888888889999996
No 54
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.69 E-value=7.5e+02 Score=26.51 Aligned_cols=82 Identities=13% Similarity=0.144 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hhHHHHHHHH------HHHH--HHHHHHHH
Q 003959 113 YRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATK--------TKTLHDACDR------LVIE--KQRLIEFA 176 (783)
Q Consensus 113 y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~k--------T~~l~~~ce~------Ll~e--q~~L~~~a 176 (783)
-+.|++.|...+.+.+.+.+.+-.-...+.+...+|..+-.- +..|+..|.. .+.+ ....+.++
T Consensus 59 mkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~~~~~~~~l~~~f~ 138 (243)
T cd07666 59 MNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEELADSLKGMASCIDRCCKATDKRMKGLSEQLL 138 (243)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888888888888888876554433444444444444322 2223322222 2222 12234677
Q ss_pred HHHHhcccchhhHHHHHH
Q 003959 177 EAVQSKLKYFDELENIAA 194 (783)
Q Consensus 177 e~I~~~L~yF~~Ld~itr 194 (783)
+.|.+++.|.+.+-.+.+
T Consensus 139 ~~Lkeyv~y~~slK~vlk 156 (243)
T cd07666 139 PVIHEYVLYSETLMGVIK 156 (243)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888777775554
No 55
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=25.65 E-value=7.3e+02 Score=26.58 Aligned_cols=53 Identities=9% Similarity=0.070 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhcccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHHHHHHhhhC
Q 003959 171 RLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGN 225 (783)
Q Consensus 171 ~L~~~ae~I~~~L~yF~~Ld~itr~L~sp~~~V~~~~F~~~L~~lD~ci~Fl~~h 225 (783)
.+..+.+.+.+-...|.....- .-..|+.-+..-+|-+-+..-|.|+.+|..+
T Consensus 136 ~l~~l~~~v~~l~~~~~~~~~~--~~~~~~~flsq~~l~~Y~~~ee~~t~~L~~y 188 (256)
T PF14932_consen 136 ELNQLLGEVSKLASELAHAHSG--QQQNPPVFLSQMPLEQYLSQEEQFTKYLTSY 188 (256)
T ss_pred HHHHHHHHHHHHHHHHHHhccc--ccCCCCchhhhCCHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555442111 1234554567778999999999999988753
No 56
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.51 E-value=7.4e+02 Score=25.37 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003959 113 YRHYVNTLMGRIQTCDDILRQ 133 (783)
Q Consensus 113 y~~y~~~L~~~~~~~d~ll~~ 133 (783)
-+.|+++|..++.+.+.+...
T Consensus 19 ~~eyi~~L~~~l~~~~kv~~R 39 (200)
T cd07624 19 MNEYLTLFGEKLGTIERISQR 39 (200)
T ss_pred HHHHHHHHHHHhHHHHHHHHH
Confidence 356788888777776666643
No 57
>PRK15352 type III secretion system protein SsaO; Provisional
Probab=24.34 E-value=4.4e+02 Score=24.01 Aligned_cols=50 Identities=14% Similarity=0.241 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 003959 126 TCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEF 175 (783)
Q Consensus 126 ~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ 175 (783)
....+..+..+-+..=..|..+|.....+-+.|++..+.|+..+.+...+
T Consensus 68 qma~lftqaqsfltqrqql~nqyqqlvs~~s~lq~n~nalmk~kekitmv 117 (125)
T PRK15352 68 QMAGLFTQAQSFLTQRQQLENQYQQLVSRRSELQKNFNALMKKKEKITMV 117 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhee
Confidence 44556667777788888888999999999999999999999777765443
No 58
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=24.31 E-value=4.9e+02 Score=25.21 Aligned_cols=52 Identities=15% Similarity=0.193 Sum_probs=10.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhhHHHHHHhhCCCC
Q 003959 149 HAVATKTKTLHDACDRLVIEKQRLIEFAEAV-QSKLKYFDELENIAASFYSPN 200 (783)
Q Consensus 149 ~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I-~~~L~yF~~Ld~itr~L~sp~ 200 (783)
..+..+-..|...+=+++..+.-+....-.| .+-=.--..|+.+.+.|+.|+
T Consensus 75 ~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l~~~l~~p~ 127 (141)
T PF13874_consen 75 EEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEALEAQLNAPA 127 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHcCch
Confidence 3333333444444444444444333333222 222223355667777777776
No 59
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=24.14 E-value=4.8e+02 Score=29.14 Aligned_cols=46 Identities=17% Similarity=0.290 Sum_probs=28.7
Q ss_pred hhccChHHHHh-hHHHHHHHHhhhhH-----HHHHHHHHHHHHHHHHHHHHH
Q 003959 86 AVLVNTNQFYN-WFTDLELAMKSETE-----EKYRHYVNTLMGRIQTCDDIL 131 (783)
Q Consensus 86 ~~i~~~~~F~~-w~~~le~~~~~~~~-----~~y~~y~~~L~~~~~~~d~ll 131 (783)
.++.|..+||+ |....|....+.-. ..|-..++..-..+.+.+.+.
T Consensus 225 ~~v~s~re~~d~W~~~ae~~~~e~~~S~efak~~G~lvna~m~lr~~~qe~~ 276 (320)
T TIGR01834 225 KPVKTAKALYDLWVIAAEEAYAEVFASEENAKVHGKFINALMRLRIQQQEIV 276 (320)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999 88777776644322 233444555555555555555
No 60
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=23.87 E-value=1.1e+03 Score=26.86 Aligned_cols=125 Identities=14% Similarity=0.150 Sum_probs=74.5
Q ss_pred HHHHhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhhhhHHHHHHHHH
Q 003959 92 NQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQH------HAVATKTKTLHDACDRL 165 (783)
Q Consensus 92 ~~F~~w~~~le~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~------~~V~~kT~~l~~~ce~L 165 (783)
.+...=++++-..+......+--...+++....+..+.++.++......++.+-.+. ..++.=|..+.++.+++
T Consensus 230 d~L~~~ltrL~~~~~~~~v~~l~~~~~~~a~~~~~~~~ll~~l~~l~~~l~~ll~~l~~~~lL~Nle~lt~~LA~as~~l 309 (370)
T PLN03094 230 DELVGICTRLAREMEAIGVAKMYALAERAADLMEEARPLLLKIQAMAEDLQPLLSEVRDSGLLKEVEKLTRVAAEASEDL 309 (370)
T ss_pred HHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHH
Confidence 444445666666665554455556677777777777777776666666666663222 23344445555555544
Q ss_pred HHHH------HHHHHHHHHHHhcccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHHHH
Q 003959 166 VIEK------QRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECI 219 (783)
Q Consensus 166 l~eq------~~L~~~ae~I~~~L~yF~~Ld~itr~L~sp~~~V~~~~F~~~L~~lD~ci 219 (783)
-.-. +.+..+.+.+.+--.-|..++.++..++. -+.+..|..-|.++=++|
T Consensus 310 ~~l~~~l~~p~~~~~L~qtl~sl~~t~~ni~~vs~dv~~---ft~D~~~r~~Lr~li~~L 366 (370)
T PLN03094 310 RRLNSSILTPENTELLRQSIYTLTKTLKHIESISSDISG---FTGDEATRRNLKQLIQSL 366 (370)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHH
Confidence 3321 12355566666666667777777777654 355667877777776665
No 61
>COG1392 Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]
Probab=23.33 E-value=8.8e+02 Score=25.46 Aligned_cols=84 Identities=17% Similarity=0.246 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhhCCCCCc-cCCccHHHHHHHHHHHHHHhhh--------CCCCc-Ch
Q 003959 162 CDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMN-VGNGNFFHLLKRLDECILYVEG--------NPQYA-ES 231 (783)
Q Consensus 162 ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~L~sp~~~-V~~~~F~~~L~~lD~ci~Fl~~--------hp~fk-da 231 (783)
.+.+..+-..++.-|+.|... |...|++.-+. +.+++|..+++.+|+-++.++. .+.+- +-
T Consensus 44 ~e~~~~~I~~lE~~aD~ik~~---------i~~~l~~~~flP~~R~Dil~L~~~~D~i~D~~ed~A~~l~l~~~~ip~~~ 114 (217)
T COG1392 44 AEELLKEIKDLEHEADEIKRE---------IRLELYKGFFLPFDREDILELIESQDDIADAAEDAAKLLLLRKPFIPEEL 114 (217)
T ss_pred HHHHHHHHHHHHHHhhHHHHH---------HHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCcch
Confidence 355555556667777777654 33455554333 6889999999999999999974 23444 77
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003959 232 SVYLLKFRQLQSRALGMIRSHVL 254 (783)
Q Consensus 232 ~~Y~~rfkqcltRAl~LIr~~~~ 254 (783)
.-|..+|-+.-.+|...+...+.
T Consensus 115 ~e~~~~~~~~~~~a~~~~~~ai~ 137 (217)
T COG1392 115 DEEFLRLVDLSLKAAELLAEAIE 137 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888777766554
No 62
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=23.31 E-value=7.4e+02 Score=24.56 Aligned_cols=43 Identities=14% Similarity=0.185 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 003959 124 IQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLV 166 (783)
Q Consensus 124 ~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll 166 (783)
.+......+..+.+++.+++....-..+.++.+...+....|-
T Consensus 6 ~~~L~~~~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~ 48 (157)
T PF04136_consen 6 LDYLQQYREECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLH 48 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3344444455555666666665555555555555555555444
No 63
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=23.02 E-value=7.7e+02 Score=24.66 Aligned_cols=108 Identities=14% Similarity=0.168 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q 003959 107 SETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYF 186 (783)
Q Consensus 107 ~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF 186 (783)
.+..........++..-.+.+.....++....+.........+.+.++-.++.+.+..+..+-..+. +++..-..+.
T Consensus 84 ~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~---~~~~~~~~~~ 160 (191)
T PF04156_consen 84 SELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ---KELQDSREEV 160 (191)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q ss_pred hhHHHHHHhhCCCCCccCCccHHHHHHHHHHHHHHh
Q 003959 187 DELENIAASFYSPNMNVGNGNFFHLLKRLDECILYV 222 (783)
Q Consensus 187 ~~Ld~itr~L~sp~~~V~~~~F~~~L~~lD~ci~Fl 222 (783)
..+..-.+++.. ......+++....+.++.|
T Consensus 161 ~~~~~~~~~~~~-----~~~~l~~~~~~~~~l~~~~ 191 (191)
T PF04156_consen 161 QELRSQLERLQE-----NLQQLEEKIQELQELLEQL 191 (191)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhC
No 64
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=22.99 E-value=5e+02 Score=22.51 Aligned_cols=58 Identities=16% Similarity=0.282 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003959 125 QTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSK 182 (783)
Q Consensus 125 ~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~ 182 (783)
+.++.+-..+..+++.+..|+..-....++-.++.+.-+.|-.+-.+|..=.+...++
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~r 61 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQER 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777777777777777777777777777766666555554443
No 65
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=22.98 E-value=7.4e+02 Score=27.19 Aligned_cols=85 Identities=18% Similarity=0.157 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc--------cc
Q 003959 114 RHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKL--------KY 185 (783)
Q Consensus 114 ~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L--------~y 185 (783)
|.....|....++..+=-..|++....|..|+++|-.=+=.--+=+-+=.+-=.|-++|..+.|.+++.| +|
T Consensus 71 RHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDkGiQKY 150 (305)
T PF15290_consen 71 RHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQKY 150 (305)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHH
Confidence 4455667777777777677888888999999999854221111111111122345567777778777777 58
Q ss_pred hhhHHHHHHhhCC
Q 003959 186 FDELENIAASFYS 198 (783)
Q Consensus 186 F~~Ld~itr~L~s 198 (783)
|-.+.--.+||.+
T Consensus 151 FvDINiQN~KLEs 163 (305)
T PF15290_consen 151 FVDINIQNKKLES 163 (305)
T ss_pred HhhhhhhHhHHHH
Confidence 8887777676643
No 66
>PF10372 YojJ: Bacterial membrane-spanning protein N-terminus; InterPro: IPR019457 This entry is found at the N terminus of a family of putative membrane-spanning bacterial proteins. These proteins often contain IPR003390 from INTERPRO towards the C terminus. ; PDB: 2FB5_A.
Probab=22.21 E-value=2.5e+02 Score=24.32 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhHHHHHH
Q 003959 113 YRHYVNTLMGRIQTCDDILRQVDGT-LDLFNELQLQHHAVATKTKTLHDAC 162 (783)
Q Consensus 113 y~~y~~~L~~~~~~~d~ll~~~~~~-l~~l~~L~~~~~~V~~kT~~l~~~c 162 (783)
-+.|+.++.......-.-+++-+.| |..|++|...+..++.-+++|+-+|
T Consensus 15 lk~~L~~I~~~~~~i~~~ld~~~~ClL~e~e~i~~~f~~~q~~AssyYLq~ 65 (70)
T PF10372_consen 15 LKQYLEQIEEEISQIIQTLDEDDCCLLCEFEEIREKFLDIQTLASSYYLQC 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TT--GGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCceechhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555444444444444 6788999999999999999999877
No 67
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=22.06 E-value=1.6e+03 Score=29.67 Aligned_cols=112 Identities=13% Similarity=0.219 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 003959 113 YRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAV---------ATKTKTLHDACDRLVIEKQRLIEFAEAVQSKL 183 (783)
Q Consensus 113 y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V---------~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L 183 (783)
|..-..++.......+..+.++++.+..+..+......+ ....+.++..|++++....++ .++|...+
T Consensus 846 ~~~~~~~le~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~l~~~~ 922 (1201)
T PF12128_consen 846 VKQRRKELEEELKALEEQLEQLEEQLRRLRDLLEKLAELSEPPNAEDAEGSVDERLRDLEDLLQRRKRL---REELKKAV 922 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 344455555555666666666666666544444333222 112345557777777655443 33344333
Q ss_pred cchh-------------hHHHHHHhhCC-CCCccCCccHHHHHHHHHHHHHHhhhCCCCc
Q 003959 184 KYFD-------------ELENIAASFYS-PNMNVGNGNFFHLLKRLDECILYVEGNPQYA 229 (783)
Q Consensus 184 ~yF~-------------~Ld~itr~L~s-p~~~V~~~~F~~~L~~lD~ci~Fl~~hp~fk 229 (783)
..|. ..+....+.+. +...+..++....+..|-+.++.+ ||+++
T Consensus 923 ~~f~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~--~~~~~ 980 (1201)
T PF12128_consen 923 ERFKGVLTKHSGSELAENWEELRSEDSFLSDKGINSDDYRQWAPDLQELLDVL--IPQQQ 980 (1201)
T ss_pred HHHHHHHHhccccchHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHhh--hHHHH
Confidence 3333 22222112221 111234456677788887877777 55544
No 68
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=20.66 E-value=9.3e+02 Score=24.70 Aligned_cols=93 Identities=12% Similarity=0.124 Sum_probs=54.7
Q ss_pred ccChHHHHhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 003959 88 LVNTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVI 167 (783)
Q Consensus 88 i~~~~~F~~w~~~le~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~ 167 (783)
..+..+.+...+.-+.....+.-..|..|.+.+......-+.++.+...+...+..-..+......+...=.+..+.+..
T Consensus 91 ~~~~~~~~~~~a~~~~~~l~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ 170 (236)
T PF09325_consen 91 FEKISELLEEQANQEEETLGEPLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAEN 170 (236)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHH
Confidence 33444555555555555556666777777777777777777777777777777777777776665542222344444444
Q ss_pred HHHHHHHHHHHHH
Q 003959 168 EKQRLIEFAEAVQ 180 (783)
Q Consensus 168 eq~~L~~~ae~I~ 180 (783)
+-..++.-.+.+.
T Consensus 171 ei~~~~~~~~~~~ 183 (236)
T PF09325_consen 171 EIEEAERRVEQAK 183 (236)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444333
Done!