Query 003959
Match_columns 783
No_of_seqs 164 out of 213
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 09:36:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003959.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003959hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pft_A Exocytosis protein; hel 98.0 0.038 1.3E-06 64.1 39.9 138 182-337 5-149 (571)
2 2b1e_A Exocyst complex compone 97.9 0.053 1.8E-06 62.7 38.2 182 172-379 5-205 (564)
3 1u4q_A Spectrin alpha chain, b 76.4 14 0.00049 38.2 11.2 17 91-107 118-134 (322)
4 1s35_A Beta-I spectrin, spectr 70.0 20 0.0007 34.8 9.9 19 90-108 8-26 (214)
5 1cun_A Protein (alpha spectrin 56.4 1.2E+02 0.0041 29.0 12.6 17 91-107 9-25 (213)
6 3fb2_A Spectrin alpha chain, b 54.0 67 0.0023 31.4 10.4 19 89-107 20-38 (218)
7 3vmx_A Voltage-gated hydrogen 52.1 53 0.0018 25.2 6.8 40 138-177 3-42 (48)
8 1u5p_A Spectrin alpha chain, b 47.6 54 0.0019 31.7 8.4 19 90-108 11-29 (216)
9 1u4q_A Spectrin alpha chain, b 43.1 2.8E+02 0.0097 28.1 14.4 19 90-108 11-29 (322)
10 3uul_A Utrophin; spectrin repe 43.0 1.6E+02 0.0054 25.2 11.8 17 91-107 11-27 (118)
11 3l39_A Putative PHOU-like phos 35.4 3.4E+02 0.012 26.8 12.2 54 162-224 58-112 (227)
12 3uun_A Dystrophin; triple heli 33.6 2.2E+02 0.0076 24.2 10.0 18 90-107 10-27 (119)
13 2jqq_A Conserved oligomeric go 30.5 2.9E+02 0.0098 27.2 10.0 176 101-317 16-193 (204)
14 2xs1_A Programmed cell death 6 27.0 2.1E+02 0.0071 33.6 10.3 82 112-197 613-694 (704)
15 2ca5_A MXIH; transport protein 26.4 2.7E+02 0.0093 23.8 7.9 51 207-261 22-72 (85)
16 1ez3_A Syntaxin-1A; three heli 25.7 2.1E+02 0.0071 25.4 7.9 62 123-184 10-71 (127)
17 1deq_A Fibrinogen (alpha chain 23.6 7.3E+02 0.025 26.9 14.4 115 111-240 63-187 (390)
18 3rkg_A Magnesium transporter M 22.9 4E+02 0.014 27.3 10.2 93 119-223 142-251 (261)
19 1xl3_C Protein type A, secreti 21.6 1.3E+02 0.0044 26.2 5.1 67 690-756 15-89 (92)
20 2qk1_A Protein STU2; STU2P, XM 20.7 1E+02 0.0035 30.9 5.3 119 616-756 100-223 (249)
No 1
>2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis complex; 2.25A {Mus musculus}
Probab=98.02 E-value=0.038 Score=64.09 Aligned_cols=138 Identities=12% Similarity=0.169 Sum_probs=82.2
Q ss_pred cccchhhHHHHHHhhC-CCCCccCCccHHHHHHHHHHHHHHhhhCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003959 182 KLKYFDELENIAASFY-SPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSA 260 (783)
Q Consensus 182 ~L~yF~~Ld~itr~L~-sp~~~V~~~~F~~~L~~lD~ci~Fl~~hp~fkda~~Y~~rfkqcltRAl~LIr~~~~~~L~~~ 260 (783)
-+.||+.....-+.+. .|. .+-+.|...+++|.+++.||..|+- + + ..+.|.+.++..||.-+...|...|..-
T Consensus 5 v~~~~d~~~~~e~~i~~gp~--~~l~~yL~av~~l~~a~~~~~~~~~-~-s-~~l~~~~~Ll~~a~~~Le~eF~~lL~~~ 79 (571)
T 2pft_A 5 VISYYHVASDTEKIIREGPT--GRLEEYLGSMAKIQKAVEYFQDNSP-D-S-PELNKVKLLFERGKESLESEFRSLMTRH 79 (571)
T ss_dssp TSTHHHHHHHHHHHHHHCCT--TCHHHHHHHHHHHHHHHHHHHHHST-T-C-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccchhhhhhhhcCcH--hhHHHHHHHHHHHHHHHHHHHhcCC-C-h-HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3566666554444332 444 5678999999999999999998542 2 2 2489999999999999999999988875
Q ss_pred HHH-----HHHHHHhcCCCCCCCCcchhhhhhHHHH-HHHHHhHHHHHHHHHhhhChhHHhHHHHHHHHHHHHHHhhhhh
Q 003959 261 SSQ-----VQAAIRSSGGSKTSVSEGVEASLIYVRF-KAAASELKPVLEEIESRSSKKEYVQILEECHKLYCEQRLSLVK 334 (783)
Q Consensus 261 ~~~-----V~~~l~~~~~~~~~~s~~~~~aLlY~kF-~~~a~~l~~Li~eie~R~~~~Ey~slL~dc~~~Yf~~R~~LL~ 334 (783)
+.- +...+..... .+ +.+. .. +..+ ....+.++.+...+-.+.. ..+|.+.|.+.|...|.
T Consensus 80 ~~~~~p~~ll~~~~~~~~-~~--~~~~--~~-~~~~~~~~~~~L~~Ia~~m~~~g~-------~~~~~~~Y~~~R~~~l~ 146 (571)
T 2pft_A 80 SKVVSPVLLLDLISADDE-LE--VQED--VV-LEHLPESVLRDVVRISRWLVEYGR-------NQDFMNVYYQIRSSQLD 146 (571)
T ss_dssp CCCCCHHHHHHHHHHTCC-CC-------------SSCHHHHHHHHHHHHHHHHHCS-------CCHHHHHHHHHHHHHHH
T ss_pred CcCCChHHHHhccccccc-cC--cccc--cc-ccCCCHHHHHHHHHHHHHHHHcCC-------chHHHHHHHHHHHHHHH
Confidence 421 1122221110 00 0000 00 0001 1223345554444433321 25799999999988877
Q ss_pred HHH
Q 003959 335 GIV 337 (783)
Q Consensus 335 p~i 337 (783)
..+
T Consensus 147 ~sL 149 (571)
T 2pft_A 147 RSI 149 (571)
T ss_dssp HHH
T ss_pred HHH
Confidence 766
No 2
>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A
Probab=97.91 E-value=0.053 Score=62.74 Aligned_cols=182 Identities=16% Similarity=0.149 Sum_probs=108.4
Q ss_pred HHHHHHHHHhcccchhhHHHHHHhhC-CCCCccCCccHHHHHHHHHHHHHHhhhC----CCCcChHHHHHHHHHHHHHHH
Q 003959 172 LIEFAEAVQSKLKYFDELENIAASFY-SPNMNVGNGNFFHLLKRLDECILYVEGN----PQYAESSVYLLKFRQLQSRAL 246 (783)
Q Consensus 172 L~~~ae~I~~~L~yF~~Ld~itr~L~-sp~~~V~~~~F~~~L~~lD~ci~Fl~~h----p~fkda~~Y~~rfkqcltRAl 246 (783)
++..-+.|.+-+.||+.....-..++ +|. .++-+.|...|.+|++++.||+.| +++|+.+-=+.+++.++.+++
T Consensus 5 Id~~l~~i~~v~~~~~~~~~~e~iI~~Gp~-~~~l~~Yl~al~rl~~al~~~~~~n~~s~e~~~f~g~l~~~~~L~~~g~ 83 (564)
T 2b1e_A 5 IESTLNSVASVKDLANEASKYEIILQKGIN-QVGLKQYTQVVHKLDDMLEDIQSGQANREENSEFHGILTHLEQLIKRSE 83 (564)
T ss_dssp ---CCGGGCCHHHHHHHHHHHHHHHHTCHH-HHCHHHHHHHHHHHHHHHHHHHC----CCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-cccHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhHHHHHHHHHHHHHHH
Confidence 33444455556666665555555553 343 367789999999999999999874 478888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHhcCCCCCCCCcchhhhhhHHHHHHHHHhHHHHHHHHHhhhChhHHhHHHHHHHHH
Q 003959 247 GMIRSHVLSVLKSASSQVQ--AAIRSSGGSKTSVSEGVEASLIYVRFKAAASELKPVLEEIESRSSKKEYVQILEECHKL 324 (783)
Q Consensus 247 ~LIr~~~~~~L~~~~~~V~--~~l~~~~~~~~~~s~~~~~aLlY~kF~~~a~~l~~Li~eie~R~~~~Ey~slL~dc~~~ 324 (783)
.-+..+|.+.|+. +.-+. .-+.... .-+..+ .+....++.+...+.... .-.+|.+.
T Consensus 84 ~~L~~~F~~lL~~-s~p~~p~~~i~k~~-p~p~l~------------~~~l~~L~~Ia~~m~~~g-------~~~~~~~i 142 (564)
T 2b1e_A 84 AQLRVYFISILNS-IKPFDPQINITKKM-PFPYYE------------DQQLGALSWILDYFHGNS-------EGSIIQDI 142 (564)
T ss_dssp HHHHHHHHHHHTT-SCCCCHHHHHHHTC-CCCCCC------------HHHHHHHHHHHHHHHHTT-------CHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCCHHHhhccCC-CCCCCC------------HHHHHHHHHHHHHHHhcC-------CchHHHHH
Confidence 9999999988874 11000 0011100 000000 122335555555544432 13579999
Q ss_pred HHHHHhhhhhHHHHHHHHhHhc------c------CCchhhHHhHHHHHHHHHHHHHHhhcccCCCC
Q 003959 325 YCEQRLSLVKGIVQQRISEFSK------K------ETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSS 379 (783)
Q Consensus 325 Yf~~R~~LL~p~i~~~l~e~~~------~------~~l~~l~r~~~~~l~~~C~~E~~Lf~~FF~~~ 379 (783)
|.+.|...|...+. .+.. + +....-+..-..-+..+.+.|+.|..+.|+..
T Consensus 143 Y~~~R~~~l~~sL~----~L~~~~k~~~~~~~~~~e~~~~~i~~~~~a~~~l~~~E~~L~~~vf~~~ 205 (564)
T 2b1e_A 143 LVGERSKLILKCMA----FLEPFAKEISTAKNAPYEKGSSGMNSYTEALLGFIANEKSLVDDLYSQY 205 (564)
T ss_dssp HHHHHHHHHHHHHT----TTSTTCC------------CCSTHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHH----HhhhhccccccccCCchhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 99999776655432 2210 0 00011122222334666889999999999873
No 3
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=76.43 E-value=14 Score=38.25 Aligned_cols=17 Identities=18% Similarity=0.405 Sum_probs=11.0
Q ss_pred hHHHHhhHHHHHHHHhh
Q 003959 91 TNQFYNWFTDLELAMKS 107 (783)
Q Consensus 91 ~~~F~~w~~~le~~~~~ 107 (783)
..+|..|....+..+.+
T Consensus 118 ~~~~~~Wl~e~e~~~~~ 134 (322)
T 1u4q_A 118 MDDEESWIKEKKLLVSS 134 (322)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhccC
Confidence 45556688887766544
No 4
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=70.03 E-value=20 Score=34.79 Aligned_cols=19 Identities=26% Similarity=0.538 Sum_probs=15.2
Q ss_pred ChHHHHhhHHHHHHHHhhh
Q 003959 90 NTNQFYNWFTDLELAMKSE 108 (783)
Q Consensus 90 ~~~~F~~w~~~le~~~~~~ 108 (783)
...+|..|....+..+.+.
T Consensus 8 ~~~~l~~Wl~~~~~~l~~~ 26 (214)
T 1s35_A 8 DLDDFQAWLSITQKAVASE 26 (214)
T ss_dssp HHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 3578899999999988653
No 5
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=56.43 E-value=1.2e+02 Score=29.00 Aligned_cols=17 Identities=18% Similarity=0.405 Sum_probs=11.2
Q ss_pred hHHHHhhHHHHHHHHhh
Q 003959 91 TNQFYNWFTDLELAMKS 107 (783)
Q Consensus 91 ~~~F~~w~~~le~~~~~ 107 (783)
..++..|....+..+.+
T Consensus 9 ~~~~~~Wl~e~e~~l~~ 25 (213)
T 1cun_A 9 MDDEESWIKEKKLLVSS 25 (213)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHhHHHHHHHHhcC
Confidence 45667788887776543
No 6
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=54.04 E-value=67 Score=31.36 Aligned_cols=19 Identities=11% Similarity=0.356 Sum_probs=15.2
Q ss_pred cChHHHHhhHHHHHHHHhh
Q 003959 89 VNTNQFYNWFTDLELAMKS 107 (783)
Q Consensus 89 ~~~~~F~~w~~~le~~~~~ 107 (783)
....++..|....+..+.+
T Consensus 20 ~~~~~l~~Wl~~~~~~l~~ 38 (218)
T 3fb2_A 20 SDFRDLMSWINGIRGLVSS 38 (218)
T ss_dssp HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 3467888899999999864
No 7
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=52.13 E-value=53 Score=25.20 Aligned_cols=40 Identities=23% Similarity=0.208 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 003959 138 LDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAE 177 (783)
Q Consensus 138 l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae 177 (783)
-..+..|...+..+..+...|...|..+-.|-.||..+-.
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 4567888889999999999999999999988888887643
No 8
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=47.55 E-value=54 Score=31.71 Aligned_cols=19 Identities=26% Similarity=0.601 Sum_probs=14.7
Q ss_pred ChHHHHhhHHHHHHHHhhh
Q 003959 90 NTNQFYNWFTDLELAMKSE 108 (783)
Q Consensus 90 ~~~~F~~w~~~le~~~~~~ 108 (783)
+..++..|....+..+.+.
T Consensus 11 ~~~~l~~Wl~~~e~~l~~~ 29 (216)
T 1u5p_A 11 GIKDFDFWLSEVEALLASE 29 (216)
T ss_dssp HHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhcCc
Confidence 3567778999999988664
No 9
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=43.07 E-value=2.8e+02 Score=28.13 Aligned_cols=19 Identities=26% Similarity=0.601 Sum_probs=15.0
Q ss_pred ChHHHHhhHHHHHHHHhhh
Q 003959 90 NTNQFYNWFTDLELAMKSE 108 (783)
Q Consensus 90 ~~~~F~~w~~~le~~~~~~ 108 (783)
...++..|....+..+.+.
T Consensus 11 ~~~~l~~Wl~~~e~~l~~~ 29 (322)
T 1u4q_A 11 GIKDFDFWLSEVEALLASE 29 (322)
T ss_dssp HHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 3577888999999988653
No 10
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=43.00 E-value=1.6e+02 Score=25.23 Aligned_cols=17 Identities=12% Similarity=0.386 Sum_probs=14.2
Q ss_pred hHHHHhhHHHHHHHHhh
Q 003959 91 TNQFYNWFTDLELAMKS 107 (783)
Q Consensus 91 ~~~F~~w~~~le~~~~~ 107 (783)
..++..|..+.|..+.+
T Consensus 11 l~el~~WL~e~e~~l~~ 27 (118)
T 3uul_A 11 LEEVLTWLLSAEDTFQE 27 (118)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 57888999999988765
No 11
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=35.36 E-value=3.4e+02 Score=26.85 Aligned_cols=54 Identities=7% Similarity=0.071 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhhCCCCCc-cCCccHHHHHHHHHHHHHHhhh
Q 003959 162 CDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMN-VGNGNFFHLLKRLDECILYVEG 224 (783)
Q Consensus 162 ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~L~sp~~~-V~~~~F~~~L~~lD~ci~Fl~~ 224 (783)
.+.+..+-..++.-|+.|... |...|+..-+. +.++++..+...+|+.+++++.
T Consensus 58 ~~~~~~~I~~lE~~aD~i~~~---------i~~~L~~~fitP~dReDI~~L~~~lDdI~D~ie~ 112 (227)
T 3l39_A 58 RADYYKQIKDMEREGDRLTHL---------IFDELSTTFITPFDREDIHDLASCMDDVIDGINS 112 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHCSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666543 55566554433 6788999999999999999985
No 12
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=33.65 E-value=2.2e+02 Score=24.19 Aligned_cols=18 Identities=11% Similarity=0.405 Sum_probs=14.3
Q ss_pred ChHHHHhhHHHHHHHHhh
Q 003959 90 NTNQFYNWFTDLELAMKS 107 (783)
Q Consensus 90 ~~~~F~~w~~~le~~~~~ 107 (783)
...++..|..+.|..+.+
T Consensus 10 ~l~el~~WL~~~e~~l~~ 27 (119)
T 3uun_A 10 ALEEVLSWLLSAEDTLQA 27 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 357788999999988754
No 13
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=30.45 E-value=2.9e+02 Score=27.24 Aligned_cols=176 Identities=13% Similarity=0.168 Sum_probs=77.6
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003959 101 LELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQ 180 (783)
Q Consensus 101 le~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~ 180 (783)
++..+.++....|-.|. .-|+..-++-++++..+.....+-.++.+|-..|- + ..+....|.|.
T Consensus 16 m~~~LLe~i~~~YddY~-------~fC~~f~~~n~E~l~eLQ~v~~Dl~~F~~QL~qL~---~------~~i~~Tre~v~ 79 (204)
T 2jqq_A 16 MVQTLLEQIRSNYDDYL-------TFSNTYTDEENETLINLEKTQSDLQKFMTQLDHLI---K------DDISNTQEIIK 79 (204)
T ss_dssp ------------------------------------------CHHHHHHHHHHHHHHHH---H------HSCSTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHH-------HHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH---h------hhhhhHHHHHH
Confidence 34444555555565443 35666656556666666666555555544433332 2 23346678888
Q ss_pred hcccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHHHHHHhhhCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003959 181 SKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSA 260 (783)
Q Consensus 181 ~~L~yF~~Ld~itr~L~sp~~~V~~~~F~~~L~~lD~ci~Fl~~hp~fkda~~Y~~rfkqcltRAl~LIr~~~~~~L~~~ 260 (783)
..+.|-..||.|...|+.- +.=.+-..+..++-.|+.=|-..-. -|-+.... +...|-++
T Consensus 80 d~l~YLkkLD~l~~~Lq~h---~~Lse~l~l~kqLs~sLh~mC~~~p-ld~eLc~~----------------l~~qL~~L 139 (204)
T 2jqq_A 80 DVLEYLKKLDEIYGSLRNH---SQLTEALSLGKRLSKSLHEMCGIEP-LEEEICSG----------------LIEQLYKL 139 (204)
T ss_dssp HHHHHHHHHHHHHHTCSSS---SHHHHHHHHHHHHHHHHHHHHTSSC-CCHHHHHH----------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHhCCCC-CcHHHHHH----------------HHHHHHHH
Confidence 8999999999999998763 2333445566677777777666533 44443322 22222222
Q ss_pred HHHHHHHHHhcCCCCCCCCcchhhhhhHHHHHHHHHhHHHHHHHHHhhh--ChhHHhHH
Q 003959 261 SSQVQAAIRSSGGSKTSVSEGVEASLIYVRFKAAASELKPVLEEIESRS--SKKEYVQI 317 (783)
Q Consensus 261 ~~~V~~~l~~~~~~~~~~s~~~~~aLlY~kF~~~a~~l~~Li~eie~R~--~~~Ey~sl 317 (783)
..-+...+.... +. +..-..-+=+.|.+++..|+.-+.-+-.|| .+.+|..+
T Consensus 140 ~~~~~~ll~~l~----dl-~Sp~l~h~RN~yq~i~q~Fqi~lk~LtdkClE~p~~~~~l 193 (204)
T 2jqq_A 140 ITASRRILESCA----DS-NSPYIHHLRNDYQDLLQEFQISLKILTEKCLENPSSLQNL 193 (204)
T ss_dssp HHHHHHHHHHHC----SC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTHHH
T ss_pred HHHHHHHHHHHH----hc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhH
Confidence 222111221110 01 112234566778888888888888888877 34455543
No 14
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=27.05 E-value=2.1e+02 Score=33.59 Aligned_cols=82 Identities=12% Similarity=0.316 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH
Q 003959 112 KYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELEN 191 (783)
Q Consensus 112 ~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~ 191 (783)
+|..+.+.+......=+.|+.++...-+.|..+... ...+..=...+.+|-.--....++...+.+-++||+.|..
T Consensus 613 ~~~~~~~~i~~~~~~Q~~ll~~i~~~~~~f~~~~~~----~~~~~~re~~~~~l~~ay~~y~el~~~l~eG~~FY~~L~~ 688 (704)
T 2xs1_A 613 VYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQS----NNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTE 688 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 588888888888888888888888777777665321 1112222344444444445666888999999999999998
Q ss_pred HHHhhC
Q 003959 192 IAASFY 197 (783)
Q Consensus 192 itr~L~ 197 (783)
+..+|.
T Consensus 689 ~~~~~~ 694 (704)
T 2xs1_A 689 ILVRFQ 694 (704)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877763
No 15
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=26.41 E-value=2.7e+02 Score=23.77 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=43.7
Q ss_pred cHHHHHHHHHHHHHHhhhCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003959 207 NFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSAS 261 (783)
Q Consensus 207 ~F~~~L~~lD~ci~Fl~~hp~fkda~~Y~~rfkqcltRAl~LIr~~~~~~L~~~~ 261 (783)
.-..+-+.+..+++=|+.+| +-+..+++|++.+.. .+++|+.-.+++|..-
T Consensus 22 ga~~~~~~v~~Ai~~L~~~P---snPa~LAeyQ~kl~e-ysl~rNaqSttiKa~K 72 (85)
T 2ca5_A 22 GTQTLQGELTLALDKLAKNP---SNPQLLAEYQSKLSE-YTLYRNAQSNTVKVIK 72 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 34678899999999999999 689999999998775 7899999998877654
No 16
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=25.65 E-value=2.1e+02 Score=25.37 Aligned_cols=62 Identities=19% Similarity=0.215 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 003959 123 RIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLK 184 (783)
Q Consensus 123 ~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~ 184 (783)
....++.|-..++.+-..+++|...+..+-..++......++|=.--......+..|..+|+
T Consensus 10 F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk 71 (127)
T 1ez3_A 10 FFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLK 71 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555444433222222222222333345555555554
No 17
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=23.58 E-value=7.3e+02 Score=26.88 Aligned_cols=115 Identities=10% Similarity=0.064 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HHHHHHHHHHHHhcccchhhH
Q 003959 111 EKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIE-KQRLIEFAEAVQSKLKYFDEL 189 (783)
Q Consensus 111 ~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~e-q~~L~~~ae~I~~~L~yF~~L 189 (783)
..++.-++.|...+......-.++......+ .+-.+...++.+.....+.++..+ .++...+-+.|.+.+.--..|
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~---~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~L 139 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNI---VELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLL 139 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3444444444444444333333333333333 223344444444444444444433 245566667777777655555
Q ss_pred HHHHHhhCCCCCccCCccHHHHHHHHHHHHHHhhh--------CCCCc-ChHHHHHHHHH
Q 003959 190 ENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEG--------NPQYA-ESSVYLLKFRQ 240 (783)
Q Consensus 190 d~itr~L~sp~~~V~~~~F~~~L~~lD~ci~Fl~~--------hp~fk-da~~Y~~rfkq 240 (783)
..+.+.+- .=+.|||..|++-.. .-+|+ |.+.|...=||
T Consensus 140 q~~l~~q~------------~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~e~ye~qqKQ 187 (390)
T 1deq_A 140 QKNVRDQL------------VDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYKNQQKQ 187 (390)
T ss_pred HHHHHHHH------------HHHHHHHHHHHHHhcccccccchhhhhhccHHHHHHHHHH
Confidence 55554442 245666766644321 22555 55555555555
No 18
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=22.91 E-value=4e+02 Score=27.34 Aligned_cols=93 Identities=16% Similarity=0.183 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-----------HHHHHhc
Q 003959 119 TLMGRIQTCDDILRQVD-----GTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEF-----------AEAVQSK 182 (783)
Q Consensus 119 ~L~~~~~~~d~ll~~~~-----~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~-----------ae~I~~~ 182 (783)
++......|..+|+.+. .-+..|...+..-..+..+...++++=+++|++-..+..+ .++++--
T Consensus 142 e~~~l~~~~~~~L~~L~~~i~~~~L~~Ll~~~k~L~~~~~kv~~vr~~leelLddDeDm~~myLT~k~~~~~d~eElEmL 221 (261)
T 3rkg_A 142 DFKLHSQICIQILNDLENEVNRLKLRHLLIKSKDLTLFYQKTLLIRDLLDELLENDDDLANMYLTVKKSPKDNFSDLEML 221 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHTCCSSCCCTTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhhccCCCCCccchHHHHHH
Confidence 34444445555555544 2233333333455667777777888888888777666333 3444444
Q ss_pred c-cchhhHHHHHHhhCCCCCccCCccHHHHHHHHHHHHHHhh
Q 003959 183 L-KYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVE 223 (783)
Q Consensus 183 L-~yF~~Ld~itr~L~sp~~~V~~~~F~~~L~~lD~ci~Fl~ 223 (783)
| .||.++|.+..++.+ +.+.||..-+++.
T Consensus 222 LE~Y~~q~d~~~~~~~~------------L~~~I~~TEe~i~ 251 (261)
T 3rkg_A 222 IETYYTQCDEYVQQSES------------LIQDIKSTEEIVN 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHH
Confidence 5 577777777776643 5566666555553
No 19
>1xl3_C Protein type A, secretion control protein; YOPN, TYEA, type III secretion, cell invasion; HET: MLY; 2.20A {Yersinia pestis} SCOP: a.243.1.1
Probab=21.64 E-value=1.3e+02 Score=26.22 Aligned_cols=67 Identities=15% Similarity=0.144 Sum_probs=43.3
Q ss_pred cccccccChhHHHHHHHHHHHH-HHhhcHH---HHHHHHh----hcCChhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003959 690 LKDQAFATPDKVAELVHKVNAA-IQQELPP---VMAKMKL----YLQNPSTRTILFKPVKTNIVEAHIQVQSLLK 756 (783)
Q Consensus 690 l~~q~fa~p~~i~~~~~~~~~~-i~~~lp~---~~~~m~l----YL~d~~t~~iL~~pI~~~i~~~~~q~~~ll~ 756 (783)
|+++-|++|..|..+..++.-. ++.++-- +.+.++. -.+|++.+..|+.++|+.+-.+.++=...++
T Consensus 15 L~e~rwi~~~~I~~l~~~~~~~d~e~qI~Flqel~~l~R~iP~~vf~d~e~R~~lL~a~Q~AlD~aI~~Ede~l~ 89 (92)
T 1xl3_C 15 LVDXRWAGIHDIEHLANAFSLPTPEIXVRFYQDLXRMFRLFPLGVFSDEEQRQNLLQMCQNAIDMAIESEEEELS 89 (92)
T ss_dssp HHHSTTCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHTSCGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHCCHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5667888888887776643322 2222222 2222222 1578999999999999999999888555544
No 20
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=20.72 E-value=1e+02 Score=30.95 Aligned_cols=119 Identities=7% Similarity=0.082 Sum_probs=70.5
Q ss_pred hhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHhhhcCCCCcccchhccccccccc
Q 003959 616 SLARTLSPRVLESQIDAKKELEKSLKATCEEFIMAVTKLVVDP-MLSFVAKVTAVKVALSSGNQNQNVDSLMAKPLKDQA 694 (783)
Q Consensus 616 ~l~~~l~P~v~e~~~Dsk~eld~~Lk~~ce~fI~~~t~~i~~p-l~~f~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~q~ 694 (783)
..+..++|.+.+..-|.|..+-.....++..|...+....+.| +...++.+-... ..++ ..++.++
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l-----~~k~--------~~vk~~a 166 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHM-----KHKT--------PQIRMEC 166 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHT-----TCSS--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHH-----cCCC--------hHHHHHH
Confidence 4566678999999999999999999999999999763322222 333444332110 0110 0112111
Q ss_pred ccChhHHHHHHHHHH---HHHHhhc-HHHHHHHHhhcCChhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003959 695 FATPDKVAELVHKVN---AAIQQEL-PPVMAKMKLYLQNPSTRTILFKPVKTNIVEAHIQVQSLLK 756 (783)
Q Consensus 695 fa~p~~i~~~~~~~~---~~i~~~l-p~~~~~m~lYL~d~~t~~iL~~pI~~~i~~~~~q~~~ll~ 756 (783)
. .-|..++.... ..+...+ |.+...+.-+++|.+ ..||+.-.+....+...+.
T Consensus 167 l---~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~------~~VR~aA~~~l~~i~~~vG 223 (249)
T 2qk1_A 167 T---QLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQ------PAIRTIGFESFAILIKIFG 223 (249)
T ss_dssp H---HHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSS------HHHHHHHHHHHHHHHHHHC
T ss_pred H---HHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHHHHHhC
Confidence 1 11222222222 2233456 777777788888773 5688888888888777764
Done!