Query 003960
Match_columns 783
No_of_seqs 518 out of 2463
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 15:03:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003960.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003960hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1865 Ubiquitin carboxyl-ter 100.0 1.8E-66 4E-71 571.3 22.9 323 452-783 86-409 (545)
2 KOG0944 Ubiquitin-specific pro 100.0 6.5E-57 1.4E-61 499.0 18.7 367 370-783 225-761 (763)
3 cd02661 Peptidase_C19E A subfa 100.0 5.9E-55 1.3E-59 470.5 29.6 303 477-782 1-304 (304)
4 cd02660 Peptidase_C19D A subfa 100.0 1.7E-54 3.8E-59 473.4 30.2 298 478-782 1-328 (328)
5 cd02663 Peptidase_C19G A subfa 100.0 1.2E-54 2.5E-59 469.8 28.0 279 479-782 1-300 (300)
6 cd02668 Peptidase_C19L A subfa 100.0 4.5E-54 9.7E-59 470.2 29.5 288 479-782 1-324 (324)
7 cd02664 Peptidase_C19H A subfa 100.0 1.5E-53 3.1E-58 466.7 25.1 274 479-782 1-327 (327)
8 cd02671 Peptidase_C19O A subfa 100.0 6.8E-53 1.5E-57 461.1 28.9 274 473-782 20-332 (332)
9 cd02667 Peptidase_C19K A subfa 100.0 7.3E-53 1.6E-57 451.3 24.5 246 479-782 1-279 (279)
10 cd02657 Peptidase_C19A A subfa 100.0 1.7E-52 3.7E-57 453.3 27.2 283 479-782 1-305 (305)
11 cd02658 Peptidase_C19B A subfa 100.0 2.6E-52 5.5E-57 453.3 28.4 275 479-782 1-311 (311)
12 cd02659 peptidase_C19C A subfa 100.0 8.5E-51 1.8E-55 445.4 27.1 291 476-783 1-331 (334)
13 cd02669 Peptidase_C19M A subfa 100.0 5.2E-50 1.1E-54 454.4 26.1 285 475-782 117-440 (440)
14 COG5560 UBP12 Ubiquitin C-term 100.0 1.9E-48 4E-53 428.0 15.3 306 475-783 263-821 (823)
15 COG5533 UBP5 Ubiquitin C-termi 100.0 5.5E-47 1.2E-51 387.5 20.9 308 471-783 65-413 (415)
16 cd02662 Peptidase_C19F A subfa 100.0 3.7E-46 8E-51 391.0 22.8 210 479-782 1-240 (240)
17 COG5207 UBP14 Isopeptidase T [ 100.0 6.8E-45 1.5E-49 390.9 18.6 375 369-783 217-748 (749)
18 cd02674 Peptidase_C19R A subfa 100.0 5.1E-44 1.1E-48 370.8 20.6 220 479-782 1-230 (230)
19 PF00443 UCH: Ubiquitin carbox 100.0 6.7E-42 1.5E-46 358.3 19.1 249 477-781 1-269 (269)
20 KOG1868 Ubiquitin C-terminal h 100.0 1.9E-42 4.1E-47 397.8 13.0 306 475-783 299-645 (653)
21 cd02673 Peptidase_C19Q A subfa 100.0 3.6E-41 7.8E-46 353.4 20.0 238 480-782 2-245 (245)
22 COG5077 Ubiquitin carboxyl-ter 100.0 2.6E-42 5.6E-47 384.5 8.0 348 416-783 126-510 (1089)
23 cd02666 Peptidase_C19J A subfa 100.0 9.1E-41 2E-45 365.6 19.2 271 477-782 1-343 (343)
24 KOG1866 Ubiquitin carboxyl-ter 100.0 5.6E-42 1.2E-46 381.9 3.6 293 475-783 93-433 (944)
25 cd02665 Peptidase_C19I A subfa 100.0 1.1E-39 2.5E-44 336.7 17.4 217 479-782 1-228 (228)
26 cd02257 Peptidase_C19 Peptidas 100.0 6.4E-39 1.4E-43 330.6 22.4 235 479-782 1-255 (255)
27 KOG1867 Ubiquitin-specific pro 100.0 7.4E-39 1.6E-43 362.4 16.5 303 475-783 159-483 (492)
28 cd02672 Peptidase_C19P A subfa 100.0 4.5E-36 9.7E-41 318.9 21.7 243 466-782 4-268 (268)
29 KOG1873 Ubiquitin-specific pro 100.0 6.5E-37 1.4E-41 342.9 7.5 305 475-783 203-876 (877)
30 KOG4598 Putative ubiquitin-spe 100.0 1.8E-36 4E-41 334.1 0.9 267 475-783 85-440 (1203)
31 KOG1863 Ubiquitin carboxyl-ter 100.0 1.4E-34 3E-39 356.7 12.6 347 416-783 110-484 (1093)
32 PF13423 UCH_1: Ubiquitin carb 100.0 6.3E-33 1.4E-37 299.6 23.4 277 478-763 1-295 (295)
33 KOG1870 Ubiquitin C-terminal h 100.0 1.4E-33 3.1E-38 340.0 12.7 304 475-783 244-840 (842)
34 cd02670 Peptidase_C19N A subfa 100.0 9.8E-31 2.1E-35 272.5 15.7 195 479-782 1-241 (241)
35 KOG1864 Ubiquitin-specific pro 100.0 1.6E-30 3.5E-35 298.9 14.7 306 475-782 230-570 (587)
36 KOG1872 Ubiquitin-specific pro 99.9 3.8E-28 8.2E-33 263.7 6.8 293 475-782 103-467 (473)
37 KOG1871 Ubiquitin-specific pro 99.9 9.5E-26 2.1E-30 239.3 13.5 302 475-783 26-418 (420)
38 KOG2026 Spindle pole body prot 99.9 2.6E-24 5.7E-29 227.3 14.4 283 473-783 130-440 (442)
39 KOG1275 PAB-dependent poly(A) 99.8 1.9E-19 4E-24 206.3 14.1 306 466-781 488-860 (1118)
40 PF15499 Peptidase_C98: Ubiqui 98.9 8.4E-09 1.8E-13 105.8 9.6 149 595-782 119-275 (275)
41 PF01753 zf-MYND: MYND finger; 98.9 9.5E-10 2.1E-14 81.4 1.7 37 103-140 1-37 (37)
42 KOG1710 MYND Zn-finger and ank 98.4 4.9E-08 1.1E-12 101.2 0.9 42 101-143 320-362 (396)
43 KOG3556 Familial cylindromatos 96.8 0.00088 1.9E-08 74.9 3.5 99 477-577 368-472 (724)
44 KOG2061 Uncharacterized MYND Z 96.6 0.0014 3E-08 71.4 2.8 55 95-149 131-185 (362)
45 KOG3612 PHD Zn-finger protein 96.4 0.0007 1.5E-08 76.4 -0.4 42 101-145 528-569 (588)
46 KOG1864 Ubiquitin-specific pro 96.2 0.0076 1.6E-07 71.0 6.8 99 480-578 34-151 (587)
47 KOG1887 Ubiquitin carboxyl-ter 93.9 0.013 2.9E-07 69.5 -0.8 161 596-771 593-771 (806)
48 PF08715 Viral_protease: Papai 93.8 0.21 4.7E-06 54.6 8.5 76 476-575 101-177 (320)
49 PF13824 zf-Mss51: Zinc-finger 93.7 0.068 1.5E-06 42.9 3.1 45 102-147 1-49 (55)
50 PLN03158 methionine aminopepti 92.3 0.088 1.9E-06 59.6 2.8 40 101-141 10-56 (396)
51 PF05408 Peptidase_C28: Foot-a 90.3 0.11 2.4E-06 51.6 0.9 36 727-769 130-165 (193)
52 PF04438 zf-HIT: HIT zinc fing 86.0 0.37 8.1E-06 34.0 1.1 28 101-129 3-30 (30)
53 PF05408 Peptidase_C28: Foot-a 73.4 7.4 0.00016 39.1 5.7 25 475-499 31-55 (193)
54 KOG3362 Predicted BBOX Zn-fing 71.8 2 4.3E-05 41.2 1.3 33 101-134 119-151 (156)
55 KOG2857 Predicted MYND Zn-fing 61.1 3.4 7.3E-05 39.5 0.6 37 101-143 6-45 (157)
56 PF10013 DUF2256: Uncharacteri 50.8 4.9 0.00011 30.5 -0.1 29 101-129 9-40 (42)
57 PF09889 DUF2116: Uncharacteri 47.7 15 0.00033 30.2 2.2 31 101-138 4-34 (59)
58 PRK01343 zinc-binding protein; 46.8 18 0.00038 29.6 2.5 27 101-132 10-36 (57)
59 KOG4317 Predicted Zn-finger pr 44.7 8.6 0.00019 41.5 0.5 35 101-141 8-43 (383)
60 PF03292 Pox_P4B: Poxvirus P4B 43.2 33 0.00071 40.5 4.9 74 681-765 479-572 (666)
61 COG3478 Predicted nucleic-acid 43.2 19 0.00042 30.0 2.2 35 657-691 3-39 (68)
62 PF14353 CpXC: CpXC protein 37.6 42 0.00091 31.7 4.0 48 611-669 2-49 (128)
63 PLN03144 Carbon catabolite rep 35.2 25 0.00053 42.2 2.4 40 101-141 60-110 (606)
64 COG4338 Uncharacterized protei 34.6 4.7 0.0001 31.4 -2.3 28 101-128 13-43 (54)
65 PF12855 Ecl1: Life-span regul 29.7 27 0.00058 26.9 1.0 31 101-134 7-37 (43)
66 PF01473 CW_binding_1: Putativ 26.9 56 0.0012 20.2 1.9 15 746-761 2-16 (19)
67 KOG2738 Putative methionine am 25.7 31 0.00068 37.3 1.0 40 101-141 7-53 (369)
68 PF02099 Josephin: Josephin; 25.4 85 0.0018 31.1 3.9 31 726-764 99-129 (157)
69 PF09297 zf-NADH-PPase: NADH p 22.8 38 0.00082 24.0 0.7 22 101-122 4-32 (32)
70 KOG4215 Hepatocyte nuclear fac 22.0 33 0.00071 38.1 0.3 38 100-144 19-62 (432)
71 PF10748 DUF2531: Protein of u 21.3 1E+02 0.0022 29.7 3.3 32 721-760 33-64 (132)
72 PF14803 Nudix_N_2: Nudix N-te 20.8 44 0.00095 24.4 0.7 21 102-122 2-33 (34)
73 KOG1871 Ubiquitin-specific pro 20.5 42 0.00091 37.7 0.7 83 417-507 123-208 (420)
No 1
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-66 Score=571.27 Aligned_cols=323 Identities=49% Similarity=0.899 Sum_probs=304.9
Q ss_pred cCceeecchhhhhhccccccccCcCCcccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCcccCCCCchHHHHHHHHHH
Q 003960 452 RKLKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVM 531 (783)
Q Consensus 452 ~~~~~~~~~e~~~~~~~~~~~~~~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~~~~~~~~l~~qL~~L~~ 531 (783)
.+.+.+|++|.+. +...++. ..+.||.|+|||||+|||||||.++|||.+||+...|...|....+|++|+|+.++.
T Consensus 86 ~p~k~Lfp~e~~~--~~~~~~~-~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~ 162 (545)
T KOG1865|consen 86 PPAKVLFPYEKLP--LSSDRPA-AVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHIT 162 (545)
T ss_pred Ccchhccccceec--ccccccc-cCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHH
Confidence 4448999999987 3333344 567999999999999999999999999999999999999999899999999999998
Q ss_pred HHHhCCC-CCChHHHHHHHHhcccccCCCccccHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEEE
Q 003960 532 MLRESAG-PLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSK 610 (783)
Q Consensus 532 ~L~s~~~-~isP~~fl~~l~~~~~~f~~g~QQDA~EFL~~LLd~L~~e~~~~~~~~~~~~~~~~~~siI~~lF~g~l~~~ 610 (783)
......+ +|+|..|+..|..+..+|..|+|+||||||++++|.|+..++ ++....++..++.++|+++|+|.++++
T Consensus 163 ~A~~~~g~pisP~~i~s~L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL---~g~~~~~~~sq~ttlv~~iFGG~LrS~ 239 (545)
T KOG1865|consen 163 RALHNPGHPISPSQILSNLRNISAHFGRGRQEDAHEFLRFTVDAMQKACL---PGHKQVDPRSQDTTLVHQIFGGYLRSQ 239 (545)
T ss_pred HHhcCCCCccChHHHHHhhhhhcccccCCchhhHHHHHHHHHHHHHHhhc---CCCccCCcccccceehhhhhccchhhc
Confidence 7666555 999999999999999999999999999999999999999987 567788899999999999999999999
Q ss_pred EEecCCCCccceeeeeeeeeeccccccCCHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEeeecCCceEEEEEEee
Q 003960 611 VKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRF 690 (783)
Q Consensus 611 i~C~~C~~~s~~~e~f~~LsL~I~~~~~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~~lP~iLiIqL~RF 690 (783)
++|..|.+++.++|+.++|+|+|. ++.+|+++|++|+.+|.++|+|+|.|++|++++.|.|+++|.++|+||+|+|+||
T Consensus 240 vkC~~C~~vS~tyE~~~dltvei~-d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF 318 (545)
T KOG1865|consen 240 IKCLHCKGVSDTYEPYLDLTLEIQ-DASSLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRF 318 (545)
T ss_pred eecccCCCcccccccccceEEEec-cchhHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCCceEEEeeehh
Confidence 999999999999999999999999 7899999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccccceEEecCCccCCCccccCCCCCCCcEEEEEEEEEecCCCCCCCCeEEEEEEcCCCCEEEEcCCeeeeeCCCc
Q 003960 691 QEGRYGKINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQ 770 (783)
Q Consensus 691 ~~~~~~Ki~~~V~fP~~LDL~~~~~~~~~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~~~~W~~fNDs~Vt~vs~e~ 770 (783)
+.+...||++.|.||+.|||.|||+.+.+.+..|.|+|||+|.|. +.++|||+||||..+|.||.|||+.|+.++++.
T Consensus 319 ~~~~~gKI~K~I~fPE~LDl~PyMS~~~e~s~~Y~LYavlVH~g~--~~~~GHY~cYvks~~g~Wy~~DDS~V~~~~~~~ 396 (545)
T KOG1865|consen 319 SNGTGGKISKPVSFPETLDLQPYMSQPNEGSTVYKLYAVLVHLGT--SCHSGHYFCYVKSQNGQWYKMDDSEVTQSSIES 396 (545)
T ss_pred ccCcccccccccCCcccccccccccCCCCCCceEEEEEEEEeccc--cccCCceEEEEEcCCCceEEccCceeeeccccc
Confidence 999899999999999999999999988888999999999999999 899999999999999999999999999999999
Q ss_pred cCCCCcEEEEEEC
Q 003960 771 VMSEGAYMLFYMR 783 (783)
Q Consensus 771 v~~~~aYILfY~R 783 (783)
|+++.||||||.|
T Consensus 397 VLsq~AYmLfY~R 409 (545)
T KOG1865|consen 397 VLSQQAYILFYAR 409 (545)
T ss_pred eecccceEEEEEe
Confidence 9999999999987
No 2
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-57 Score=499.01 Aligned_cols=367 Identities=23% Similarity=0.317 Sum_probs=310.6
Q ss_pred CCCCCccccCCCccceecccccchhhccCCCCcchhhhccccCCCCCCCCCcccccccccccCcccccccccchhhhhhh
Q 003960 370 NPMGTKNCKSAKSCTKVVGDQSCLEKERKGPIADESKAARVRDTIPAQGSNVVSKMGIMKMMGLRKSTKLRQDSSELWHD 449 (783)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gi~k~~~l~~~~kt~~s~~el~~d 449 (783)
||.--|+-+-.+.. .--|+|+.-+.- +.+.-..||+|||| |+.++.|+++++++++.+
T Consensus 225 hPLaVKLgsIs~dg---~DvycY~cDd~v---------------~dPnl~~hl~hfGI----d~~~m~kteksl~elel~ 282 (763)
T KOG0944|consen 225 HPLAVKLGSISPDG---ADVYCYDCDDEV---------------RDPNLESHLSHFGI----DMAKMDKTEKSLVELELD 282 (763)
T ss_pred CceEEEecccCCCc---cceeeecccccc---------------cCccHHHHHHhcCc----cHHHhccchhHHHHHHHH
Confidence 77766666655555 334566533221 11245789999999 999999999999999999
Q ss_pred hhcCceeecchhhhhhccccccccCcCCcccccCCCcccHHHHHHHHhcCHHHHHHHHhc--ccCcccCCCCchHHHHHH
Q 003960 450 QHRKLKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRR--SHSSACCGKDWCLMCELE 527 (783)
Q Consensus 450 ~n~~~~~~~~~e~~~~~~~~~~~~~~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~--~~~~~~~~~~~~l~~qL~ 527 (783)
+|..++|.+..|...++- ..++ ++++||.|+||+||||||||+|+++|.|...++.. .+...+..+..+|.|||.
T Consensus 283 ~N~i~Ew~~~~esg~~l~--p~~g-pgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~~~~~P~ndf~cQ~~ 359 (763)
T KOG0944|consen 283 QNRIWEWEALEESGAPLE--PLFG-PGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQERIFNCYPKDPTNDFNCQLA 359 (763)
T ss_pred hhcccCceeeccCCCccc--cccC-CCccceeecCcchhHHHHHHHheecccHHHhhccccceeecCCCCcchhHHHHHH
Confidence 999999999999765553 2556 89999999999999999999999999999888764 334445567899999999
Q ss_pred HHHHHHHhC-----------CCCCChHHHHHHHHhcccccCCCccccHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccc
Q 003960 528 QHVMMLRES-----------AGPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQET 596 (783)
Q Consensus 528 ~L~~~L~s~-----------~~~isP~~fl~~l~~~~~~f~~g~QQDA~EFL~~LLd~L~~e~~~~~~~~~~~~~~~~~~ 596 (783)
+|.+.|.+. ++.|+|.+|+..+++.++.|++.+||||+|||.+||+.|.+-... ..
T Consensus 360 Kl~~gm~sgkys~p~~~~~~qngIsP~mFK~~igknHpeFst~~QQDA~EFllfLl~ki~~n~rs-------------~~ 426 (763)
T KOG0944|consen 360 KLLHGMLSGKYSKPLMDPSNQNGISPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLEKIRENSRS-------------SL 426 (763)
T ss_pred HHHHHhhcCcccCccCCccccCCcCHHHHHHHHcCCCccccchhhhhHHHHHHHHHHHHhhcccc-------------cC
Confidence 999999752 357999999999999999999999999999999999999763211 11
Q ss_pred cccccccceEEEEEEEecCCCCccceeeeeeeeeecccc-----ccCCHHHHHhhcCCCccCCCCCccccCccCcceeeE
Q 003960 597 TFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYG-----WVESLEDALTQFTSPEDLDGENMYKCARCATYVRAR 671 (783)
Q Consensus 597 siI~~lF~g~l~~~i~C~~C~~~s~~~e~f~~LsL~I~~-----~~~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~ 671 (783)
..+.++|.|.++.++.|..|++++++++..+.|.|+|+. ...++..||+.|+.+ .+++ |+|..|+.+..+.
T Consensus 427 ~nptd~frF~ve~Rv~C~~c~kVrYs~~~~~~i~lpv~~~~~v~~~v~~~~cleaff~p-q~~d---f~s~ac~~K~~a~ 502 (763)
T KOG0944|consen 427 PNPTDLFRFEVEDRVSCLGCRKVRYSYESEYLIQLPVPMTNEVREKVPISACLEAFFEP-QVDD---FWSTACGEKKGAT 502 (763)
T ss_pred CCHHHHHHhhhhhhhhhhccccccccchhheeeEeeccccccccccCCHHHHHHHhcCC-cchh---hhhHhhcCccccc
Confidence 347799999999999999999999999999999999985 235999999999999 4443 9999999999999
Q ss_pred EEEeeecCCceEEEEEEeeecCcc--cccceEEecCCccCCCccccCC--------------------------------
Q 003960 672 KQLSIHEAPNILTIVLKRFQEGRY--GKINKCITFPEMLDMMPFMTGT-------------------------------- 717 (783)
Q Consensus 672 k~~~i~~lP~iLiIqL~RF~~~~~--~Ki~~~V~fP~~LDL~~~~~~~-------------------------------- 717 (783)
|+.+|++||+||+||+.||.+..+ +|++..|++|+.||++.|++.+
T Consensus 503 kt~~~ksfP~yLiiqv~rf~~~dw~pkKld~~iempe~ldls~~rs~g~~p~ee~lpde~~~~~~~~~d~s~i~qL~~MG 582 (763)
T KOG0944|consen 503 KTTRFKSFPDYLIIQVGRFTLQDWVPKKLDVSIEMPEELDLSSYRSKGLQPGEEALPDEAPETSEFAADRSVISQLVEMG 582 (763)
T ss_pred cccccccCCceEEEEeeEEEecCceeeeeccceecchhhchhhhhhcCCCCcccccCCcCcccCccchhHHHHHHHHHcC
Confidence 999999999999999999987655 8999999999999998775421
Q ss_pred --------------------------------------------------------------------------------
Q 003960 718 -------------------------------------------------------------------------------- 717 (783)
Q Consensus 718 -------------------------------------------------------------------------------- 717 (783)
T Consensus 583 Fp~eac~rAly~tgN~~aEaA~NWl~~HMdDpd~~~p~vvp~~~~~a~~~~~~e~~v~si~smGf~~~qa~~aL~~~n~n 662 (763)
T KOG0944|consen 583 FPEEACRRALYYTGNSGAEAASNWLMEHMDDPDIDDPFVVPGNSPKADAREVDEESVASIVSMGFSRNQAIKALKATNNN 662 (763)
T ss_pred CCHHHHHHHHhhhcCccHHHHHHHHHHhccCcccCCceecCCCCCccccCCCChhHheeeeeecCcHHHHHHHHHhcCcc
Confidence
Q ss_pred --------------------------------------CCCCCcEEEEEEEEEecCCCCCCCCeEEEEEEcCCCCEEEEc
Q 003960 718 --------------------------------------GDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRID 759 (783)
Q Consensus 718 --------------------------------------~~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~~~~W~~fN 759 (783)
.+++.+|+|+|||+|+|+ ++++||||||||+ .|+|++||
T Consensus 663 veravDWif~h~d~~~ed~~~~~s~~~~~~~~~~~~~~~dg~~~Y~L~a~IsHmGt--s~~sGHYV~hirK-egkWVlfN 739 (763)
T KOG0944|consen 663 VERAVDWIFSHMDIPVEDAAEGESSSAIESESTPSGTGKDGPGKYALFAFISHMGT--SAHSGHYVCHIRK-EGKWVLFN 739 (763)
T ss_pred HHHHHHHHHhcccccccccCcCCCCCcchhhcCCcccCCCCCcceeEEEEEecCCC--CCCCcceEEEEee-cCcEEEEc
Confidence 014679999999999999 9999999999999 79999999
Q ss_pred CCeeeeeCCCccCCCCcEEEEEEC
Q 003960 760 DTQVHPVPMSQVMSEGAYMLFYMR 783 (783)
Q Consensus 760 Ds~Vt~vs~e~v~~~~aYILfY~R 783 (783)
|++|... ++..++.+|||||+|
T Consensus 740 DeKv~~S--~~ppK~lgYvY~y~R 761 (763)
T KOG0944|consen 740 DEKVAAS--QEPPKDLGYVYLYTR 761 (763)
T ss_pred chhhhhc--cCChhhcceEEEEEe
Confidence 9999844 556789999999998
No 3
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.9e-55 Score=470.48 Aligned_cols=303 Identities=52% Similarity=0.903 Sum_probs=270.0
Q ss_pred CcccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCcccCCCCchHHHHHHHHHHHHH-hCCCCCChHHHHHHHHhcccc
Q 003960 477 PRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLR-ESAGPLSPGRILSHMRSISCQ 555 (783)
Q Consensus 477 ~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~~~~~~~~l~~qL~~L~~~L~-s~~~~isP~~fl~~l~~~~~~ 555 (783)
|+||.|+|||||||||||+|+++|+|+++++...+.........+++++|+.++..+. +....+.|..|...+....+.
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~ 80 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERALASSGPGSAPRIFSSNLKQISKH 80 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhccCCcchHHHHHHHHHHHHHhCCCCccChHHHHHHHHHHHHh
Confidence 6899999999999999999999999999998765555445566789999999998876 456779999999999999999
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCccceeeeeeeeeecccc
Q 003960 556 IGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYG 635 (783)
Q Consensus 556 f~~g~QQDA~EFL~~LLd~L~~e~~~~~~~~~~~~~~~~~~siI~~lF~g~l~~~i~C~~C~~~s~~~e~f~~LsL~I~~ 635 (783)
|..+.||||+|||.+||+.|+.++.................++|.++|+|++...++|..|+..+.+.++|+.|+|+++.
T Consensus 81 f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~~~~l~l~i~~ 160 (304)
T cd02661 81 FRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQETTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDIKG 160 (304)
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHhhhcccccccCccccCCChhhhcCCcEEeeeEEeCCCCCCcCccccceeeeeecCC
Confidence 99999999999999999999987655332211112233456789999999999999999999999999999999999997
Q ss_pred ccCCHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEeeecCCceEEEEEEeeecCcccccceEEecCCccCCCcccc
Q 003960 636 WVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGRYGKINKCITFPEMLDMMPFMT 715 (783)
Q Consensus 636 ~~~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~~lP~iLiIqL~RF~~~~~~Ki~~~V~fP~~LDL~~~~~ 715 (783)
..+|+++|+.++.+|.+++++.|.|+.|+++..+.++..|.++|++|+|||+||..+...|++..|.||..|||.+++.
T Consensus 161 -~~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~iL~i~l~Rf~~~~~~Ki~~~v~f~~~L~l~~~~~ 239 (304)
T cd02661 161 -ADSLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNFRGGKINKQISFPETLDLSPYMS 239 (304)
T ss_pred -CCcHHHHHHHhcCceeeCCCCCeeCCCCCCccceEEEEEEecCCcEEEEEEeccccCCccccCCeEecCCeechhhccc
Confidence 3799999999999999999999999999999999999999999999999999998776689999999999999999998
Q ss_pred CCCCCCCcEEEEEEEEEecCCCCCCCCeEEEEEEcCCCCEEEEcCCeeeeeCCCccCCCCcEEEEEE
Q 003960 716 GTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQVMSEGAYMLFYM 782 (783)
Q Consensus 716 ~~~~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~~~~W~~fNDs~Vt~vs~e~v~~~~aYILfY~ 782 (783)
.+......|+|+|||+|.|. ++++|||++|+|..+++||+|||+.|++++++++..+.||||||.
T Consensus 240 ~~~~~~~~Y~L~~vi~H~G~--~~~~GHY~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aYil~Y~ 304 (304)
T cd02661 240 QPNDGPLKYKLYAVLVHSGF--SPHSGHYYCYVKSSNGKWYNMDDSKVSPVSIETVLSQKAYILFYI 304 (304)
T ss_pred cCCCCCceeeEEEEEEECCC--CCCCcCCEEEEECCCCCEEEEeCCeeEECCHHHhcCCCcEEEEeC
Confidence 76667889999999999998 567999999999888999999999999999999999999999993
No 4
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.7e-54 Score=473.41 Aligned_cols=298 Identities=34% Similarity=0.597 Sum_probs=260.4
Q ss_pred cccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCc--ccCCCCchHHHHHHHHHHHHHhC--CCCCChHHHHHHHHhcc
Q 003960 478 RGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSS--ACCGKDWCLMCELEQHVMMLRES--AGPLSPGRILSHMRSIS 553 (783)
Q Consensus 478 ~GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~--~~~~~~~~l~~qL~~L~~~L~s~--~~~isP~~fl~~l~~~~ 553 (783)
+||.|+|||||||||||+|+++|+|+++++...+.. .......++.++|++||..|+.. ...+.|..|+..++...
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~~~ 80 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYSGDRSPYGPINLLYLSWKHS 80 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhc
Confidence 699999999999999999999999999998865543 23345678999999999999543 35789999999999888
Q ss_pred cccCCCccccHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCccceeeeeeeeeecc
Q 003960 554 CQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEI 633 (783)
Q Consensus 554 ~~f~~g~QQDA~EFL~~LLd~L~~e~~~~~~~~~~~~~~~~~~siI~~lF~g~l~~~i~C~~C~~~s~~~e~f~~LsL~I 633 (783)
+.|.++.||||+|||.+||+.|++++...... ........++|.++|+|.+...++|..|++.+.+.++|+.|+|++
T Consensus 81 ~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~---~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i 157 (328)
T cd02660 81 RNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNE---ANDESHCNCIIHQTFSGSLQSSVTCQRCGGVSTTVDPFLDLSLDI 157 (328)
T ss_pred hhhcccccccHHHHHHHHHHHHHHHhhccccc---ccccccCCceeEEecccEEEeeeEcCCCCCccceecccceeeeec
Confidence 89999999999999999999999876543211 011122357899999999999999999999999999999999999
Q ss_pred cccc--------------CCHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEeeecCCceEEEEEEeeecCc---cc
Q 003960 634 YGWV--------------ESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGR---YG 696 (783)
Q Consensus 634 ~~~~--------------~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~~lP~iLiIqL~RF~~~~---~~ 696 (783)
+... .+|+++|+.|+.+|.+++.+ |+|+.|+.++.+.++..|.++|++|+|||+||.++. ..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~~~-~~C~~C~~~~~~~~~~~i~~lP~~Lii~lkRf~~~~~~~~~ 236 (328)
T cd02660 158 PNKSTPSWALGESGVSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSLNKTSR 236 (328)
T ss_pred cccccccccccccCCCCCCCHHHHHHHhcCccccCCCC-ccCCCCCCccceEEEEEecCCCceeEEEEEeEEecCCCCCc
Confidence 8642 79999999999999998877 999999999999999999999999999999998654 47
Q ss_pred ccceEEecCCccCCCccccC---------CCCCCCcEEEEEEEEEecCCCCCCCCeEEEEEEcCCCCEEEEcCCeeeeeC
Q 003960 697 KINKCITFPEMLDMMPFMTG---------TGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVP 767 (783)
Q Consensus 697 Ki~~~V~fP~~LDL~~~~~~---------~~~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~~~~W~~fNDs~Vt~vs 767 (783)
|++..|.||..|||.+|+.. .......|+|+|||+|.|+ .++|||++|+|..+++||+|||+.|++++
T Consensus 237 K~~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~---~~~GHY~~~~~~~~~~W~~~nD~~V~~~~ 313 (328)
T cd02660 237 KIDTYVQFPLELNMTPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHKGT---LDTGHYTAYCRQGDGQWFKFDDAMITRVS 313 (328)
T ss_pred CCCcEEeCCCEechhhhcccccccccccccCCCCceEEEEEEEEeecc---CCCCcEEEEEECCCCcEEEEECCeeEECC
Confidence 99999999999999999874 2335678999999999996 45899999999966999999999999999
Q ss_pred CCccCCCCcEEEEEE
Q 003960 768 MSQVMSEGAYMLFYM 782 (783)
Q Consensus 768 ~e~v~~~~aYILfY~ 782 (783)
++++....||||||.
T Consensus 314 ~~~v~~~~ayil~Y~ 328 (328)
T cd02660 314 EEEVLKSQAYLLFYH 328 (328)
T ss_pred HHHhcCCCcEEEEeC
Confidence 999999999999994
No 5
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.2e-54 Score=469.85 Aligned_cols=279 Identities=32% Similarity=0.558 Sum_probs=246.4
Q ss_pred ccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCcccCCCCchHHHHHHHHHHHHHhCC---CCCChHHHHHHHHhcccc
Q 003960 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESA---GPLSPGRILSHMRSISCQ 555 (783)
Q Consensus 479 GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~~~~~~~~l~~qL~~L~~~L~s~~---~~isP~~fl~~l~~~~~~ 555 (783)
||.|+|||||||||||+|++ .+++++|+.||..|+... ..++|..|+..++...+.
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~---------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~~~~~ 59 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF---------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKRENEL 59 (300)
T ss_pred CccCCCcceehhHHHHHhhh---------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhhcCC
Confidence 99999999999999999997 358899999999998753 459999999999999999
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHhhhcCCCCC------CCCccccccccccccceEEEEEEEecCCCCccceeeeeeee
Q 003960 556 IGDGSQEDAHEFLRLLVASMQSICLERHGGESK------VDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDL 629 (783)
Q Consensus 556 f~~g~QQDA~EFL~~LLd~L~~e~~~~~~~~~~------~~~~~~~~siI~~lF~g~l~~~i~C~~C~~~s~~~e~f~~L 629 (783)
|..++||||+|||.+|||.|++++......... ........++|.++|+|++.++++|..|+.++.+.|+|+.|
T Consensus 60 f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~L 139 (300)
T cd02663 60 FDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANRKLNNNNNAEPQPTWVHEIFQGILTNETRCLTCETVSSRDETFLDL 139 (300)
T ss_pred CCCCccccHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCcCCCChhhhCceEEEeeEEeCCCCCCccccceeEEe
Confidence 999999999999999999999987643211100 01112346789999999999999999999999999999999
Q ss_pred eeccccccCCHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEeeecCCceEEEEEEeeecC----cccccceEEecC
Q 003960 630 TLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG----RYGKINKCITFP 705 (783)
Q Consensus 630 sL~I~~~~~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~~lP~iLiIqL~RF~~~----~~~Ki~~~V~fP 705 (783)
+|+|+. ..+|+++|+.|+.+|.++|+++|.|++|++++.+.|+..|.++|++|+|||+||.++ ...|++..|.||
T Consensus 140 sl~i~~-~~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp 218 (300)
T cd02663 140 SIDVEQ-NTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFP 218 (300)
T ss_pred ccCCCC-cCCHHHHHHHhhcccccCCCCcEECCCCCCceeEEEEEEeccCCceeEEEEEeEEeecccCCceecCceEecC
Confidence 999997 679999999999999999999999999999999999999999999999999999864 247999999999
Q ss_pred CccCCCccccCCCCCCCcEEEEEEEEEecCCCCCCCCeEEEEEEcCCCCEEEEcCCeeeeeCCCccC--------CCCcE
Q 003960 706 EMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQVM--------SEGAY 777 (783)
Q Consensus 706 ~~LDL~~~~~~~~~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~~~~W~~fNDs~Vt~vs~e~v~--------~~~aY 777 (783)
..|+|..+..........|+|+|||+|.|. +.++|||+||+|. +++||+|||+.|++++.++|. ...||
T Consensus 219 ~~L~~~~~~~~~~~~~~~Y~L~~vi~H~G~--~~~~GHY~a~~k~-~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~~aY 295 (300)
T cd02663 219 LELRLFNTTDDAENPDRLYELVAVVVHIGG--GPNHGHYVSIVKS-HGGWLLFDDETVEKIDENAVEEFFGDSPNQATAY 295 (300)
T ss_pred cEEeccccccccCCCCeEEEEEEEEEEecC--CCCCCceEEEEEC-CCcEEEEcCCceEEcCHHHHHHhcCCCCCCCceE
Confidence 999998776544555679999999999997 5779999999999 999999999999999988875 47799
Q ss_pred EEEEE
Q 003960 778 MLFYM 782 (783)
Q Consensus 778 ILfY~ 782 (783)
||||+
T Consensus 296 iLfY~ 300 (300)
T cd02663 296 VLFYQ 300 (300)
T ss_pred EEEeC
Confidence 99996
No 6
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.5e-54 Score=470.16 Aligned_cols=288 Identities=26% Similarity=0.502 Sum_probs=250.7
Q ss_pred ccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCccc---------CCCCchHHHHHHHHHHHHHhCC-CCCChHHHHHH
Q 003960 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC---------CGKDWCLMCELEQHVMMLRESA-GPLSPGRILSH 548 (783)
Q Consensus 479 GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~~---------~~~~~~l~~qL~~L~~~L~s~~-~~isP~~fl~~ 548 (783)
||.|+||||||||+||+|+++|+|+++++........ .....+++++|+.||.+|+.+. ..++|..|+..
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~~~ 80 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFVKA 80 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCCceEChHHHHHH
Confidence 8999999999999999999999999999865433210 0123579999999999998655 56999999988
Q ss_pred HHhcccccCCCccccHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCccceeeeeee
Q 003960 549 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMD 628 (783)
Q Consensus 549 l~~~~~~f~~g~QQDA~EFL~~LLd~L~~e~~~~~~~~~~~~~~~~~~siI~~lF~g~l~~~i~C~~C~~~s~~~e~f~~ 628 (783)
+ .|..++||||+|||.+||+.|++++.... .....++|.++|.|++...++|..|+..+.+.++|+.
T Consensus 81 l-----~~~~~~QqDa~EFl~~lLd~L~~~l~~~~--------~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~ 147 (324)
T cd02668 81 L-----GLDTGQQQDAQEFSKLFLSLLEAKLSKSK--------NPDLKNIVQDLFRGEYSYVTQCSKCGRESSLPSKFYE 147 (324)
T ss_pred h-----CCCCccccCHHHHHHHHHHHHHHHHhhcc--------CCcccchhhhhcceEEEEEEEeCCCCCccccccccEE
Confidence 7 46788999999999999999998764321 1123468899999999999999999999999999999
Q ss_pred eeeccccccCCHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEeeecCCceEEEEEEeeecC----cccccceEEec
Q 003960 629 LTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG----RYGKINKCITF 704 (783)
Q Consensus 629 LsL~I~~~~~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~~lP~iLiIqL~RF~~~----~~~Ki~~~V~f 704 (783)
|+|+|++ ..+|+++|+.|+.+|.++|++.|.|++|++++.+.++..|.++|++|+|||+||.++ ...|++..|.|
T Consensus 148 l~l~i~~-~~sl~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~f 226 (324)
T cd02668 148 LELQLKG-HKTLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISF 226 (324)
T ss_pred EEEEecc-cCCHHHHHHHhhCceecCCCccccCCCCCceeeeEEEEEecCCCCeEEEEEEcceeecccCcceeCCcEEEC
Confidence 9999986 579999999999999999999999999999999999999999999999999999754 34799999999
Q ss_pred CCccCCCccccCCCCCCCcEEEEEEEEEecCCCCCCCCeEEEEEEcC-CCCEEEEcCCeeeeeCCCcc------------
Q 003960 705 PEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM-QGTWFRIDDTQVHPVPMSQV------------ 771 (783)
Q Consensus 705 P~~LDL~~~~~~~~~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~-~~~W~~fNDs~Vt~vs~e~v------------ 771 (783)
|+.|||.+|+......+..|+|+|||+|.|. ++++|||+||+|+. +++||+|||+.|++++.+.+
T Consensus 227 p~~Ldl~~~~~~~~~~~~~Y~L~~vI~H~G~--~~~~GHY~~~~k~~~~~~W~~fdD~~V~~i~~~~~~~~~~~~~~~~~ 304 (324)
T cd02668 227 PEILDMGEYLAESDEGSYVYELSGVLIHQGV--SAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKLGNSEDPAKPR 304 (324)
T ss_pred CCeEechhhcccccCCCcEEEEEEEEEEcCC--CCCCEeeEEEEECCCCCcEEEEECCceEEcCHHHhhccccccccccc
Confidence 9999999998776666789999999999997 67799999999985 48999999999999976654
Q ss_pred ---------CCCCcEEEEEE
Q 003960 772 ---------MSEGAYMLFYM 782 (783)
Q Consensus 772 ---------~~~~aYILfY~ 782 (783)
.+..||||||+
T Consensus 305 ~~~~~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 305 KSEIKKGTHSSRTAYMLVYK 324 (324)
T ss_pred ccccCCCccccCceEEEEeC
Confidence 23579999996
No 7
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.5e-53 Score=466.71 Aligned_cols=274 Identities=33% Similarity=0.569 Sum_probs=239.3
Q ss_pred ccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCcccCCCCchHHHHHHHHHHHHHhC-CCCCChHH-HHHHHHhccccc
Q 003960 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRES-AGPLSPGR-ILSHMRSISCQI 556 (783)
Q Consensus 479 GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~~~~~~~~l~~qL~~L~~~L~s~-~~~isP~~-fl~~l~~~~~~f 556 (783)
||.|+||||||||+||+|+++|+||++++....... ....+++++|+.+|..|... ...+.|.. |+..+. .+.|
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~--~~~~~~~~~L~~lf~~l~~~~~~~~~~~~~~l~~~~--~~~f 76 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRL--GDSQSVMKKLQLLQAHLMHTQRRAEAPPDYFLEASR--PPWF 76 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCcccc--CCcchHHHHHHHHHHHHhhcCCcccCCHHHHHHHhc--cccc
Confidence 899999999999999999999999999987654321 23456889999999988754 45566765 665543 4678
Q ss_pred CCCccccHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCccceeeeeeeeeeccccc
Q 003960 557 GDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGW 636 (783)
Q Consensus 557 ~~g~QQDA~EFL~~LLd~L~~e~~~~~~~~~~~~~~~~~~siI~~lF~g~l~~~i~C~~C~~~s~~~e~f~~LsL~I~~~ 636 (783)
..+.||||+|||.+||+.|+. +|.++|+|++...++|..|+.++.+.++|..|+|+|+
T Consensus 77 ~~~~QqDa~EFl~~lLd~l~~--------------------~i~~~F~G~~~~~i~C~~C~~~s~~~e~f~~l~L~i~-- 134 (327)
T cd02664 77 TPGSQQDCSEYLRYLLDRLHT--------------------LIEKMFGGKLSTTIRCLNCNSTSARTERFRDLDLSFP-- 134 (327)
T ss_pred CCCCcCCHHHHHHHHHHHHHH--------------------HHHhhCcEEeEeEEEcCCCCCEecccccceeeecCCC--
Confidence 999999999999999999972 4789999999999999999999999999999999998
Q ss_pred cCCHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEeeecCCceEEEEEEeeecCc----ccccceEEecCCccCCCc
Q 003960 637 VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGR----YGKINKCITFPEMLDMMP 712 (783)
Q Consensus 637 ~~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~~lP~iLiIqL~RF~~~~----~~Ki~~~V~fP~~LDL~~ 712 (783)
+|+++|+.|+.+|.++|++.|+|++|++++.+.++..|.++|+||+|||+||.++. ..|++..|.||..|||..
T Consensus 135 --sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~ldl~~ 212 (327)
T cd02664 135 --SVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSLPV 212 (327)
T ss_pred --CHHHHHHHhcCeeEccCCCceeCCccCCccceeEEEEcccCChhhEEEeeeeEEccccCcceecCceEecCCEEecCc
Confidence 89999999999999999999999999999999999999999999999999997542 379999999999999988
Q ss_pred cccC-------------------CCCCCCcEEEEEEEEEecCCCCCCCCeEEEEEEcCC---------------------
Q 003960 713 FMTG-------------------TGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQ--------------------- 752 (783)
Q Consensus 713 ~~~~-------------------~~~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~~--------------------- 752 (783)
+... .......|+|+|||+|.|. ++++|||+||+|...
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~Vi~H~G~--~~~~GHY~a~~r~~~~~~~~~~~~~~~~~~~~~~~~ 290 (327)
T cd02664 213 RVESKSSESPLEKKEEESGDDGELVTRQVHYRLYAVVVHSGY--SSESGHYFTYARDQTDADSTGQECPEPKDAEENDES 290 (327)
T ss_pred cccccccccccccccccccccccccCCCceEEEEEEEEEccC--CCCCcceEEEEecCCccccccccccccccccccCCC
Confidence 8631 1124578999999999997 677999999999754
Q ss_pred CCEEEEcCCeeeeeCCCccCC-------CCcEEEEEE
Q 003960 753 GTWFRIDDTQVHPVPMSQVMS-------EGAYMLFYM 782 (783)
Q Consensus 753 ~~W~~fNDs~Vt~vs~e~v~~-------~~aYILfY~ 782 (783)
++||+|||+.|+.++.++|.. ..||||||+
T Consensus 291 ~~W~~fnD~~V~~~~~~~v~~~~~~~~~~~aYlLfY~ 327 (327)
T cd02664 291 KNWYLFNDSRVTFSSFESVQNVTSRFPKDTPYILFYE 327 (327)
T ss_pred CCEEEEeCCceEECCHHHHHHhhCCCCCCCEEEEEeC
Confidence 789999999999999988875 789999996
No 8
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.8e-53 Score=461.08 Aligned_cols=274 Identities=29% Similarity=0.505 Sum_probs=234.8
Q ss_pred cCcCCcccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCcccCCCCchHHHHHHHHHH---HHHh-CCCCCChHHHHHH
Q 003960 473 DLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVM---MLRE-SAGPLSPGRILSH 548 (783)
Q Consensus 473 ~~~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~~~~~~~~l~~qL~~L~~---~L~s-~~~~isP~~fl~~ 548 (783)
+..+++||.|+|||||||||||+|+++|+|++.++...... ....+++.++. .+.. ....+.|..|+..
T Consensus 20 ~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~-------~~~~~~q~~~~~l~~~~~~~~~~~~P~~~~~~ 92 (332)
T cd02671 20 NLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLI-------SSVEQLQSSFLLNPEKYNDELANQAPRRLLNA 92 (332)
T ss_pred cCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhccc-------CcHHHHHHHHHHHHHHHhhcccccCHHHHHHH
Confidence 44789999999999999999999999999999986543111 11223333333 2222 2345679999999
Q ss_pred HHhcccccCCCccccHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCccceeeeeee
Q 003960 549 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMD 628 (783)
Q Consensus 549 l~~~~~~f~~g~QQDA~EFL~~LLd~L~~e~~~~~~~~~~~~~~~~~~siI~~lF~g~l~~~i~C~~C~~~s~~~e~f~~ 628 (783)
++..++.|..+.||||+|||.+||+.|+. +|.++|+|.+..+++|..|+..+.+.|+|++
T Consensus 93 l~~~~~~f~~~~QQDA~EFl~~LLd~L~~--------------------~i~~~F~g~~~~~~~C~~C~~~s~~~E~f~~ 152 (332)
T cd02671 93 LREVNPMYEGYLQHDAQEVLQCILGNIQE--------------------LVEKDFQGQLVLRTRCLECETFTERREDFQD 152 (332)
T ss_pred HHHhccccCCccccCHHHHHHHHHHHHHH--------------------HHHhhhceEEEEEEEeCCCCCeeceecccEE
Confidence 99999999999999999999999999974 3678999999999999999999999999999
Q ss_pred eeecccccc------------------CCHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEeeecCCceEEEEEEee
Q 003960 629 LTLEIYGWV------------------ESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRF 690 (783)
Q Consensus 629 LsL~I~~~~------------------~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~~lP~iLiIqL~RF 690 (783)
|+|+|++.. .+|+++|+.|+.+|.++|+++|.|++|++++.+.|+..|.++|++|+|||+||
T Consensus 153 lsL~i~~~~~~~~~~~~~~~~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~~~~a~k~~~~~~~P~vL~i~LkRF 232 (332)
T cd02671 153 ISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEVITIHLKCF 232 (332)
T ss_pred EEEEeCCCcccccccccccccccccccCCHHHHHHHhCCcceecCCCCeeCCCCCCceeEEEEEEEecCCCEEEEEeeee
Confidence 999998642 58999999999999999999999999999999999999999999999999999
Q ss_pred ecC--------cccccceEEecCCccCCCccccCCCCCCCcEEEEEEEEEecCCCCCCCCeEEEEEEcCCCCEEEEcCCe
Q 003960 691 QEG--------RYGKINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQ 762 (783)
Q Consensus 691 ~~~--------~~~Ki~~~V~fP~~LDL~~~~~~~~~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~~~~W~~fNDs~ 762 (783)
... ...|++..|.||..|||.++... .....|+|+|||+|.|. +.++|||+|||| ||+|||+.
T Consensus 233 ~~~~~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~~--~~~~~Y~L~~VI~H~G~--~~~~GHY~a~vr-----W~~fdD~~ 303 (332)
T cd02671 233 AANGSEFDCYGGLSKVNTPLLTPLKLSLEEWSTK--PKNDVYRLFAVVMHSGA--TISSGHYTAYVR-----WLLFDDSE 303 (332)
T ss_pred ccccccccccCCceecCccccCccccccccccCC--CCCCeEEEEEEEEEcCC--CCCCCeEEEEEE-----EEEEcCcc
Confidence 842 35799999999999999877543 24578999999999997 567999999999 99999999
Q ss_pred eeeeCCCccC---------CCCcEEEEEE
Q 003960 763 VHPVPMSQVM---------SEGAYMLFYM 782 (783)
Q Consensus 763 Vt~vs~e~v~---------~~~aYILfY~ 782 (783)
|++++++++. ...||||||+
T Consensus 304 V~~~~~~~~~~~~~~~~~~~~~aYiLfY~ 332 (332)
T cd02671 304 VKVTEEKDFLEALSPNTSSTSTPYLLFYK 332 (332)
T ss_pred eEEccHHHHHhhcCCCCCCCCceEEEEEC
Confidence 9999876554 2579999995
No 9
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.3e-53 Score=451.32 Aligned_cols=246 Identities=40% Similarity=0.689 Sum_probs=225.4
Q ss_pred ccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCcccCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHhcccccCC
Q 003960 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGD 558 (783)
Q Consensus 479 GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~~~~~~~~l~~qL~~L~~~L~s~~~~isP~~fl~~l~~~~~~f~~ 558 (783)
||.|+|||||||||||+|+++|+|+++++. +|..|+..+...++.|..
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~--------------------------------~P~~~~~~l~~~~~~f~~ 48 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE--------------------------------TPKELFSQVCRKAPQFKG 48 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH--------------------------------CHHHHHHHHHHhhHhhcC
Confidence 999999999999999999999999999875 778888888888889999
Q ss_pred CccccHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCccceeeeeeeeeecccc---
Q 003960 559 GSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYG--- 635 (783)
Q Consensus 559 g~QQDA~EFL~~LLd~L~~e~~~~~~~~~~~~~~~~~~siI~~lF~g~l~~~i~C~~C~~~s~~~e~f~~LsL~I~~--- 635 (783)
++||||+|||.+||+.|+. +|.++|.|++...++|..|+..+.+.|+|+.|+|+++.
T Consensus 49 ~~QqDA~Efl~~lld~l~~--------------------~i~~~F~G~~~~~i~C~~C~~~s~~~E~f~~L~Lp~~~~~~ 108 (279)
T cd02667 49 YQQQDSHELLRYLLDGLRT--------------------FIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDEIK 108 (279)
T ss_pred CchhhHHHHHHHHHHHHHH--------------------hhhhhcceEEEEEEEcCCCCCEeCccccceEEecCCCcccC
Confidence 9999999999999999973 47799999999999999999999999999999999864
Q ss_pred ccCCHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEeeecCCceEEEEEEeeecCc---ccccceEEecCCccCCCc
Q 003960 636 WVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGR---YGKINKCITFPEMLDMMP 712 (783)
Q Consensus 636 ~~~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~~lP~iLiIqL~RF~~~~---~~Ki~~~V~fP~~LDL~~ 712 (783)
...+|++||+.|+.+|.++|+++|.|+.|++ +.++..|.++|++|+|||+||..+. ..|++..|.||..|||.+
T Consensus 109 ~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~---a~k~~~i~~~P~~Lii~LkRF~~~~~~~~~Ki~~~v~fP~~Ldl~~ 185 (279)
T cd02667 109 SECSIESCLKQFTEVEILEGNNKFACENCTK---AKKQYLISKLPPVLVIHLKRFQQPRSANLRKVSRHVSFPEILDLAP 185 (279)
T ss_pred CCCCHHHHHHhhcCeeEecCCCcccCCccCc---eeeEeEhhhCCCeEEEEEeccccCcccCceecCceEeCCCccchhh
Confidence 2468999999999999999999999999988 8889999999999999999998763 489999999999999999
Q ss_pred cccCC-----CCCCCcEEEEEEEEEecCCCCCCCCeEEEEEEcC----------------------CCCEEEEcCCeeee
Q 003960 713 FMTGT-----GDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM----------------------QGTWFRIDDTQVHP 765 (783)
Q Consensus 713 ~~~~~-----~~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~----------------------~~~W~~fNDs~Vt~ 765 (783)
|+... ......|+|+|||+|.|. . ++|||+||||.. +++||+|||+.|++
T Consensus 186 ~~~~~~~~~~~~~~~~Y~L~~vi~H~G~--~-~~GHY~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~dD~~V~~ 262 (279)
T cd02667 186 FCDPKCNSSEDKSSVLYRLYGVVEHSGT--M-RSGHYVAYVKVRPPQQRLSDLTKSKPAADEAGPGSGQWYYISDSDVRE 262 (279)
T ss_pred ccCccccccccCCCceEEEEEEEEEeCC--C-CCCEeEEEEEcCccccccccccccccccccCCCCCCcEEEEECCccEE
Confidence 98762 234679999999999997 4 799999999973 57999999999999
Q ss_pred eCCCccCCCCcEEEEEE
Q 003960 766 VPMSQVMSEGAYMLFYM 782 (783)
Q Consensus 766 vs~e~v~~~~aYILfY~ 782 (783)
++.++|....||||||+
T Consensus 263 v~~~~v~~~~aYiLfYe 279 (279)
T cd02667 263 VSLEEVLKSEAYLLFYE 279 (279)
T ss_pred CCHHHhccCCcEEEEeC
Confidence 99999999999999996
No 10
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.7e-52 Score=453.29 Aligned_cols=283 Identities=27% Similarity=0.361 Sum_probs=247.6
Q ss_pred ccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCcc-cCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHhcccccC
Q 003960 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSA-CCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIG 557 (783)
Q Consensus 479 GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~-~~~~~~~l~~qL~~L~~~L~s~~~~isP~~fl~~l~~~~~~f~ 557 (783)
||.|+|||||||||||+|+++|+|+++++....... ......+++++|++||..|+.....++|..|+..+++..+.|.
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~i~p~~~~~~l~~~~~~f~ 80 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKKQEPVPPIEFLQLLRMAFPQFA 80 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhCCCcCCcHHHHHHHHHHCcCcc
Confidence 899999999999999999999999999987654321 2234578999999999999988889999999999999888884
Q ss_pred ------CCccccHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEEEEEecCCC-Cccceeeeeeeee
Q 003960 558 ------DGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCS-HESERYENIMDLT 630 (783)
Q Consensus 558 ------~g~QQDA~EFL~~LLd~L~~e~~~~~~~~~~~~~~~~~~siI~~lF~g~l~~~i~C~~C~-~~s~~~e~f~~Ls 630 (783)
.++||||+|||.+||+.|++++.. .....++|.++|+|++...++|..|+ ..+.+.++|+.|+
T Consensus 81 ~~~~~~~~~QqDA~EFl~~lld~L~~~~~~----------~~~~~~~i~~~F~g~~~~~~~C~~C~~~~~~~~e~f~~Ls 150 (305)
T cd02657 81 EKQNQGGYAQQDAEECWSQLLSVLSQKLPG----------AGSKGSFIDQLFGIELETKMKCTESPDEEEVSTESEYKLQ 150 (305)
T ss_pred cccCCCCccccCHHHHHHHHHHHHHHHhcc----------cCCCCcHHHHhhceEEEEEEEcCCCCCCCccccccceEEE
Confidence 459999999999999999987532 11234679999999999999999999 7899999999999
Q ss_pred eccccc--cCCHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEeeecCCceEEEEEEeeecC----cccccceEEec
Q 003960 631 LEIYGW--VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG----RYGKINKCITF 704 (783)
Q Consensus 631 L~I~~~--~~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~~lP~iLiIqL~RF~~~----~~~Ki~~~V~f 704 (783)
|+|+.. ..+|+++|..++.++.. ..|+.|+....+.++..|.++|++|+|||+||.++ ...|++..|.|
T Consensus 151 l~i~~~~~~~~l~~~L~~~~~~~~~-----~~~~~~~~~~~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~f 225 (305)
T cd02657 151 CHISITTEVNYLQDGLKKGLEEEIE-----KHSPTLGRDAIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKF 225 (305)
T ss_pred eecCCCcccccHHHHHHHhhhhhhh-----hcCcccCCCceEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEEC
Confidence 999875 46899999999976543 46889999888999999999999999999999753 24699999999
Q ss_pred CCccCCCccccCCCCCCCcEEEEEEEEEecCCCCCCCCeEEEEEEcCC-CCEEEEcCCeeeeeCCCccCC-------CCc
Q 003960 705 PEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQ-GTWFRIDDTQVHPVPMSQVMS-------EGA 776 (783)
Q Consensus 705 P~~LDL~~~~~~~~~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~~-~~W~~fNDs~Vt~vs~e~v~~-------~~a 776 (783)
|..|||.+|+. .+.+|+|+|||+|.|. ++++|||+||+|..+ ++||.|||+.|++++.++|.. ..|
T Consensus 226 P~~Ldl~~~~~----~~~~Y~L~~vI~H~G~--~~~~GHY~~~~~~~~~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~a 299 (305)
T cd02657 226 PFELDLYELCT----PSGYYELVAVITHQGR--SADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILKLSGGGDWHIA 299 (305)
T ss_pred CceEecccccC----CCCcEEEEEEEEecCC--CCCCcEEEEEEEcCCCCeEEEEECCceEEeCHHHHHhhcCCCCCceE
Confidence 99999999987 3578999999999997 677999999999964 899999999999999988864 589
Q ss_pred EEEEEE
Q 003960 777 YMLFYM 782 (783)
Q Consensus 777 YILfY~ 782 (783)
|||||+
T Consensus 300 YiL~Y~ 305 (305)
T cd02657 300 YILLYK 305 (305)
T ss_pred EEEEEC
Confidence 999996
No 11
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.6e-52 Score=453.34 Aligned_cols=275 Identities=27% Similarity=0.354 Sum_probs=240.6
Q ss_pred ccccCCCcccHHHHHHHHhcCHHHHHHHHhcccC--cccCCCCchHHHHHHHHHHHHHhC---------------CCCCC
Q 003960 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHS--SACCGKDWCLMCELEQHVMMLRES---------------AGPLS 541 (783)
Q Consensus 479 GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~--~~~~~~~~~l~~qL~~L~~~L~s~---------------~~~is 541 (783)
||.|+|||||||||||+|+++|+||++|+..... .....+..++.++|++|+..|++. ..++.
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~i~ 80 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVGIK 80 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccccC
Confidence 9999999999999999999999999999763222 222335678999999999999753 24689
Q ss_pred hHHHHHHHHhcccccCCCccccHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCccc
Q 003960 542 PGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESE 621 (783)
Q Consensus 542 P~~fl~~l~~~~~~f~~g~QQDA~EFL~~LLd~L~~e~~~~~~~~~~~~~~~~~~siI~~lF~g~l~~~i~C~~C~~~s~ 621 (783)
|..|+..++...+.|..+.||||+|||.+||+.|++++... ....+.++|+|.+..+++|..|+.++.
T Consensus 81 p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~------------~~~~~~~~f~~~~~~~i~C~~C~~~s~ 148 (311)
T cd02658 81 PSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFKN------------LGLNPNDLFKFMIEDRLECLSCKKVKY 148 (311)
T ss_pred cHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHhhccc------------ccCCchhheEEEeeEEEEcCCCCCEEE
Confidence 99999999999999999999999999999999999875321 123477999999999999999999999
Q ss_pred eeeeeeeeeecccccc-------------CCHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEeeecCCceEEEEEE
Q 003960 622 RYENIMDLTLEIYGWV-------------ESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLK 688 (783)
Q Consensus 622 ~~e~f~~LsL~I~~~~-------------~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~~lP~iLiIqL~ 688 (783)
+.++|..|+|+++... .+|+++|+.|+.+|.++ ++|+.|++++.+.++.+|.++|++|+|||+
T Consensus 149 ~~e~~~~lsL~l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i~----~~C~~C~~~~~a~k~~~i~~lP~vLii~Lk 224 (311)
T cd02658 149 TSELSEILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIE----DFCSTCKEKTTATKTTGFKTFPDYLVINMK 224 (311)
T ss_pred eecceeEEeeecccccccccccccccCCCCCHHHHHHHHcCccccc----ccccCCCCcccEEEEEEeecCCceEEEEeE
Confidence 9999999999988542 38999999999999997 689999999999999999999999999999
Q ss_pred eeecC---cccccceEEecCCccCCCccccCCCCCCCcEEEEEEEEEecCCCCCCCCeEEEEEEcC---CCCEEEEcCCe
Q 003960 689 RFQEG---RYGKINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM---QGTWFRIDDTQ 762 (783)
Q Consensus 689 RF~~~---~~~Ki~~~V~fP~~LDL~~~~~~~~~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~---~~~W~~fNDs~ 762 (783)
||..+ ...|++..|.||..| ....|+|+|||+|.|. +.++|||++|+|.. +++||+|||+.
T Consensus 225 RF~~~~~~~~~Ki~~~v~~p~~l-----------~~~~Y~L~~vI~H~G~--~~~~GHY~~~vk~~~~~~~~W~~fnD~~ 291 (311)
T cd02658 225 RFQLLENWVPKKLDVPIDVPEEL-----------GPGKYELIAFISHKGT--SVHSGHYVAHIKKEIDGEGKWVLFNDEK 291 (311)
T ss_pred EEEecCCCceEeeccccccCCcC-----------CCCcEEEEEEEEccCC--CCCCcceEEEEeCCCCCCCCEEEecCce
Confidence 99873 236999999999876 2467999999999997 67799999999985 28999999999
Q ss_pred eeeeCCCccCCCCcEEEEEE
Q 003960 763 VHPVPMSQVMSEGAYMLFYM 782 (783)
Q Consensus 763 Vt~vs~e~v~~~~aYILfY~ 782 (783)
|++++..++.+..||||||+
T Consensus 292 V~~~~~~~~~~~~~YilfY~ 311 (311)
T cd02658 292 VVASQDPPEMKKLGYIYFYQ 311 (311)
T ss_pred eEECCcccccCCcceEEEEC
Confidence 99999999999999999996
No 12
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=8.5e-51 Score=445.38 Aligned_cols=291 Identities=32% Similarity=0.513 Sum_probs=246.7
Q ss_pred CCcccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCcccCCCCchHHHHHHHHHHHHHhCCC-CCChHHHHHHHHh-cc
Q 003960 476 SPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAG-PLSPGRILSHMRS-IS 553 (783)
Q Consensus 476 ~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~~~~~~~~l~~qL~~L~~~L~s~~~-~isP~~fl~~l~~-~~ 553 (783)
|++||.|+||||||||+||+|+++|+|+++++..... .......++.++|+.||..|+.... .+.|..+. .+.. ..
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~-~~~~~~~~~~~~l~~lf~~~~~~~~~~~~~~~~~-~~~~~~~ 78 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPT-EDDDDNKSVPLALQRLFLFLQLSESPVKTTELTD-KTRSFGW 78 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCc-ccCcccccHHHHHHHHHHHHHhCCccccCcchhh-eeccCCC
Confidence 5899999999999999999999999999999875221 2223456799999999999986654 34444443 2222 23
Q ss_pred cccCCCccccHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCccceeeeeeeeeecc
Q 003960 554 CQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEI 633 (783)
Q Consensus 554 ~~f~~g~QQDA~EFL~~LLd~L~~e~~~~~~~~~~~~~~~~~~siI~~lF~g~l~~~i~C~~C~~~s~~~e~f~~LsL~I 633 (783)
..|..+.||||+|||.+||+.|+.++... ...++|.++|+|.+...++|..|+..+...++|+.|+|++
T Consensus 79 ~~~~~~~QqDa~Efl~~ll~~l~~~~~~~-----------~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i 147 (334)
T cd02659 79 DSLNTFEQHDVQEFFRVLFDKLEEKLKGT-----------GQEGLIKNLFGGKLVNYIICKECPHESEREEYFLDLQVAV 147 (334)
T ss_pred CCCCcccchhHHHHHHHHHHHHHHHhccC-----------cccchhhhhCceEEEeEEEecCCCceecccccceEEEEEc
Confidence 56788999999999999999999875321 1235789999999999999999999999999999999999
Q ss_pred ccccCCHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEeeecCCceEEEEEEeeecC----cccccceEEecCCccC
Q 003960 634 YGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG----RYGKINKCITFPEMLD 709 (783)
Q Consensus 634 ~~~~~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~~lP~iLiIqL~RF~~~----~~~Ki~~~V~fP~~LD 709 (783)
++ ..+|+++|+.|+.+|.+++.+.|.|++|++++.+.++..|.++|++|+|||+||..+ ...|++..|.||..||
T Consensus 148 ~~-~~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp~~Ld 226 (334)
T cd02659 148 KG-KKNLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPLELD 226 (334)
T ss_pred CC-CCCHHHHHHHhcCeeEecCCccEecCcCCCcccEEEEEEeecCCCEEEEEeeeeEEccccCcceeCCceEeCCceec
Confidence 86 578999999999999999999999999999999999999999999999999999753 3479999999999999
Q ss_pred CCccccCC-----------CCCCCcEEEEEEEEEecCCCCCCCCeEEEEEEcC-CCCEEEEcCCeeeeeCCCccC-----
Q 003960 710 MMPFMTGT-----------GDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM-QGTWFRIDDTQVHPVPMSQVM----- 772 (783)
Q Consensus 710 L~~~~~~~-----------~~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~-~~~W~~fNDs~Vt~vs~e~v~----- 772 (783)
|.+++... ......|+|+|||+|.|+ .++|||++|+|.. +++||+|||+.|+++++++|.
T Consensus 227 l~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~vI~H~G~---~~~GHY~~~vk~~~~~~W~~~nD~~V~~i~~~~v~~~~~g 303 (334)
T cd02659 227 MEPYTEKGLAKKEGDSEKKDSESYIYELHGVLVHSGD---AHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEEECFG 303 (334)
T ss_pred CccccccccccccccccccCCCCeeEEEEEEEEecCC---CCCCCeEEEEECCCCCceEEEeCcccEECCHHHHHHHcCC
Confidence 99988653 234678999999999995 4589999999984 699999999999999988884
Q ss_pred -----------------CCCcEEEEEEC
Q 003960 773 -----------------SEGAYMLFYMR 783 (783)
Q Consensus 773 -----------------~~~aYILfY~R 783 (783)
...||||||+|
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~ay~l~Y~~ 331 (334)
T cd02659 304 GEETQKTYDSGPRAFKRTTNAYMLFYER 331 (334)
T ss_pred CccccccccccccccccccceEEEEEEE
Confidence 23599999986
No 13
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.2e-50 Score=454.43 Aligned_cols=285 Identities=20% Similarity=0.294 Sum_probs=239.6
Q ss_pred cCCcccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCcccCCCCchHHHHHHHHHHHHHhCC---CCCChHHHHHHHHh
Q 003960 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESA---GPLSPGRILSHMRS 551 (783)
Q Consensus 475 ~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~~~~~~~~l~~qL~~L~~~L~s~~---~~isP~~fl~~l~~ 551 (783)
+|++||.|+|||||||||||+|+++|+||++++...+.........++.++|..++..+|+.. ..++|..|+..++.
T Consensus 117 ~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~fl~~l~~ 196 (440)
T cd02669 117 PGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENIKDRKSELVKRLSELIRKIWNPRNFKGHVSPHELLQAVSK 196 (440)
T ss_pred CCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccccccCCCcHHHHHHHHHHHHHhccccCCCccCHHHHHHHHHh
Confidence 789999999999999999999999999999999765443222345689999999999999753 68999999999977
Q ss_pred c-ccccCCCccccHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEEEEEecCCC-------------
Q 003960 552 I-SCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCS------------- 617 (783)
Q Consensus 552 ~-~~~f~~g~QQDA~EFL~~LLd~L~~e~~~~~~~~~~~~~~~~~~siI~~lF~g~l~~~i~C~~C~------------- 617 (783)
. ++.|..+.||||+|||.+||+.|++++... .....++|.++|+|+++..++|..|.
T Consensus 197 ~~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~---------~~~~~~ii~~~F~G~l~~~~~c~~~~~~~~~~~~~~~~c 267 (440)
T cd02669 197 VSKKKFSITEQSDPVEFLSWLLNTLHKDLGGS---------KKPNSSIIHDCFQGKVQIETQKIKPHAEEEGSKDKFFKD 267 (440)
T ss_pred hcccccCCcccCCHHHHHHHHHHHHHHHhccC---------CCCCCCcceeccCceEEEEEEeecccccccccccccccc
Confidence 5 467889999999999999999999875321 12346789999999999999987654
Q ss_pred --Cccceeeeeeeeeecccccc-------------CCHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEeeecCCce
Q 003960 618 --HESERYENIMDLTLEIYGWV-------------ESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNI 682 (783)
Q Consensus 618 --~~s~~~e~f~~LsL~I~~~~-------------~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~~lP~i 682 (783)
..+.+.++|+.|+|+||... .+|+++|+. |.|+.|.....+.|+++|.++|+|
T Consensus 268 ~~~~s~~~~pF~~LsLdip~~~~~~~~~~~~~l~~~~l~e~L~k------------y~~~~c~~~~~a~k~~~I~~LP~v 335 (440)
T cd02669 268 SRVKKTSVSPFLLLTLDLPPPPLFKDGNEENIIPQVPLKQLLKK------------YDGKTETELKDSLKRYLISRLPKY 335 (440)
T ss_pred cccceeeeccceEEEecCCCCccccccccccccCcccHHHHHHh------------cCCccceecccceEEEEEeeCCcE
Confidence 24667899999999998632 245555543 667778888888999999999999
Q ss_pred EEEEEEeeecCc--ccccceEEecCCc-cCCCccccCC---CCCCCcEEEEEEEEEecCCCCCCCCeEEEEEEcC-CCCE
Q 003960 683 LTIVLKRFQEGR--YGKINKCITFPEM-LDMMPFMTGT---GDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM-QGTW 755 (783)
Q Consensus 683 LiIqL~RF~~~~--~~Ki~~~V~fP~~-LDL~~~~~~~---~~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~-~~~W 755 (783)
|+|||+||.... ..|+...|.||.. |||.+|+... ...+..|+|+|||+|.|. ..++|||+||+|+. +++|
T Consensus 336 LiihLKRF~~~~~~~~K~~t~V~FP~~~LDm~~y~~~~~~~~~~~~~Y~L~avI~H~G~--~~~sGHY~a~v~~~~~~~W 413 (440)
T cd02669 336 LIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDYVHFDKPSLNLSTKYNLVANIVHEGT--PQEDGTWRVQLRHKSTNKW 413 (440)
T ss_pred EEEEEecccCCCCccccCCCEEECCCCccchhhhhCccccccCCCceEEEEEEEEEecc--CCCCeeEEEEEEcCCCCeE
Confidence 999999998653 4799999999996 8999998632 245689999999999997 33699999999974 7899
Q ss_pred EEEcCCeeeeeCCCccCCCCcEEEEEE
Q 003960 756 FRIDDTQVHPVPMSQVMSEGAYMLFYM 782 (783)
Q Consensus 756 ~~fNDs~Vt~vs~e~v~~~~aYILfY~ 782 (783)
|+|||+.|+++++++|...+||||||+
T Consensus 414 ~~fdD~~V~~v~~~~v~~~eaYll~Y~ 440 (440)
T cd02669 414 FEIQDLNVKEVLPQLIFLSESYIQIWE 440 (440)
T ss_pred EEEECCeeeEcCHHHhccCCceEEEeC
Confidence 999999999999999999999999996
No 14
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-48 Score=428.02 Aligned_cols=306 Identities=27% Similarity=0.470 Sum_probs=266.6
Q ss_pred cCCcccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCcccCC-----CCchHHHHHHHHHHHHHhCC-CCCChHHHHHH
Q 003960 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCG-----KDWCLMCELEQHVMMLRESA-GPLSPGRILSH 548 (783)
Q Consensus 475 ~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~~~~-----~~~~l~~qL~~L~~~L~s~~-~~isP~~fl~~ 548 (783)
.|.+||.|+||||||||.||||.|++.+|+||+...+....+. -...+..++..|+.++.... ..+.|..|+..
T Consensus 263 ~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~~haf~Ps~fK~t 342 (823)
T COG5560 263 AGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKT 342 (823)
T ss_pred ccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCccccccChHHHHHH
Confidence 4689999999999999999999999999999998766544332 34567888888888887654 57999999999
Q ss_pred HHhcccccCCCccccHHHHHHHHHHHHHHHHhhhcCCCCCCCCc---------------------cccccccccccceEE
Q 003960 549 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPR---------------------LQETTFIQHTFGGRL 607 (783)
Q Consensus 549 l~~~~~~f~~g~QQDA~EFL~~LLd~L~~e~~~~~~~~~~~~~~---------------------~~~~siI~~lF~g~l 607 (783)
|+.++..|.+..|||++||+.+|||.||+.+...........|. .++.++|.++|.|.+
T Consensus 343 IG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiItdLFqgmy 422 (823)
T COG5560 343 IGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGMY 422 (823)
T ss_pred HhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Confidence 99999999999999999999999999999876433322222221 346799999999999
Q ss_pred EEEEEecCCCCccceeeeeeeeeecccc----------------------------------------------------
Q 003960 608 WSKVKCLRCSHESERYENIMDLTLEIYG---------------------------------------------------- 635 (783)
Q Consensus 608 ~~~i~C~~C~~~s~~~e~f~~LsL~I~~---------------------------------------------------- 635 (783)
++++.|..|+.++.+++||++|+||+|-
T Consensus 423 KSTL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~pl~iel~~sSt~~~lk~lv~~~~gk~gc~ei~v~ 502 (823)
T COG5560 423 KSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKIELDASSTIRGLKKLVDAEYGKLGCFEIKVM 502 (823)
T ss_pred hceeeccCcCceeeeecchhhccccCchhhcccccEEEECCCCCCCceEEEEeccchHHHHHHHHHHHhccCCccceeEE
Confidence 9999999999999999999999999961
Q ss_pred --------------------------------------------------------------------------------
Q 003960 636 -------------------------------------------------------------------------------- 635 (783)
Q Consensus 636 -------------------------------------------------------------------------------- 635 (783)
T Consensus 503 ~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe~~~ngi~vpvvh~~~~~gYks~rlFg~pflqlnv~~~~~i~~kLvkE~ 582 (823)
T COG5560 503 CIYYGGNYNMLEPADKVLLQDIPQTDFVYLYETNDNGIEVPVVHLRIEKGYKSKRLFGDPFLQLNVLIKASIYDKLVKEF 582 (823)
T ss_pred EEEeccchhhcchhhHHHHhhcCccceEEEeecCCCCeEEEEEeccccccccchhhhCCcceEEEeecchhhHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 003960 636 -------------------------------------------------------------------------------- 635 (783)
Q Consensus 636 -------------------------------------------------------------------------------- 635 (783)
T Consensus 583 ~ell~~v~~k~tdvd~~~~q~~l~r~es~p~~wl~l~teid~kree~veeE~~~n~nd~vvi~cew~ek~y~~lFsy~~l 662 (823)
T COG5560 583 EELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEEEGQMNFNDAVVISCEWEEKRYLSLFSYDPL 662 (823)
T ss_pred HHHHHHHhhcchhhhhhhhhccchhcccCcchhhhhhhhccchhhhhhhhhhccCCCcceEEeeeccccchhhhhcCCcc
Confidence
Q ss_pred ----------ccCCHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEeeecCCceEEEEEEeeecCc--ccccceEEe
Q 003960 636 ----------WVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGR--YGKINKCIT 703 (783)
Q Consensus 636 ----------~~~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~~lP~iLiIqL~RF~~~~--~~Ki~~~V~ 703 (783)
...+|++||..|.++|.+.-.+.|+|+.|+....|.|++.|+++|.||+|||+||+... ..|+++-|+
T Consensus 663 w~~~ei~~~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss~rsfrdKiddlVe 742 (823)
T COG5560 663 WTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVE 742 (823)
T ss_pred chhHHhhhccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheeeehhhhhhcccchhhhhhhhc
Confidence 01289999999999999998899999999999999999999999999999999998543 479999999
Q ss_pred cC-CccCCCccccCCCCCCCcEEEEEEEEEecCCCCCCCCeEEEEEEcC-CCCEEEEcCCeeeeeCCCccCCCCcEEEEE
Q 003960 704 FP-EMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM-QGTWFRIDDTQVHPVPMSQVMSEGAYMLFY 781 (783)
Q Consensus 704 fP-~~LDL~~~~~~~~~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~-~~~W~~fNDs~Vt~vs~e~v~~~~aYILfY 781 (783)
|| +.|||+.+...-.+..-.|.|+||=.|+|... +|||+||+|+. +++||+|||++|+++++++.....||+|||
T Consensus 743 yPiddldLs~~~~~~~~p~liydlyavDNHyggls---gGHYtAyarn~~n~~wy~fdDsritevdped~vtssaYvLFy 819 (823)
T COG5560 743 YPIDDLDLSGVEYMVDDPRLIYDLYAVDNHYGGLS---GGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFY 819 (823)
T ss_pred cccccccccceEEeecCcceEEEeeeccccccccC---CcceeeeeecccCCceEEecCccccccCccccccceeEEEEE
Confidence 99 68999888776555568899999999999654 99999999986 679999999999999999998999999999
Q ss_pred EC
Q 003960 782 MR 783 (783)
Q Consensus 782 ~R 783 (783)
+|
T Consensus 820 rr 821 (823)
T COG5560 820 RR 821 (823)
T ss_pred Ee
Confidence 98
No 15
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-47 Score=387.48 Aligned_cols=308 Identities=27% Similarity=0.415 Sum_probs=236.3
Q ss_pred cccCcCCcccccCCCcccHHHHHHHHhcCHHHHHHHHhcc-----cCcccCCC-CchHHHHHHHHHHHHH-hCCCCCChH
Q 003960 471 VIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRS-----HSSACCGK-DWCLMCELEQHVMMLR-ESAGPLSPG 543 (783)
Q Consensus 471 ~~~~~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~-----~~~~~~~~-~~~l~~qL~~L~~~L~-s~~~~isP~ 543 (783)
+.....|.||.|+|||||||++||||+++.++...|+... -...+.++ ...+..++..|...+. .+...|+|.
T Consensus 65 ~~dn~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg~~sis~~ 144 (415)
T COG5533 65 RKDNLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGPKSISPR 144 (415)
T ss_pred hhcccCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCCCcccchH
Confidence 3344778999999999999999999999999988544322 22222222 3345555555555443 355679999
Q ss_pred HHHHHHHhcccccCCCccccHHHHHHHHHHHHHHHHhhhcCCCCCCCC-------------------------ccccccc
Q 003960 544 RILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDP-------------------------RLQETTF 598 (783)
Q Consensus 544 ~fl~~l~~~~~~f~~g~QQDA~EFL~~LLd~L~~e~~~~~~~~~~~~~-------------------------~~~~~si 598 (783)
.|++.++.+++.|+...|||+|||+.+|||.||+++....... .+.+ ...+.++
T Consensus 145 nF~~i~~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs-~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn~S~ 223 (415)
T COG5533 145 NFIDILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRS-PILELKDEFEEVREELPLSHFSHHEWNLHLRSNKSL 223 (415)
T ss_pred HHHHHHccccccccccchhhHHHHHHHHHHHHHhhhcCCcccc-cccccchHHHHHHhhcCcchhhhhhhHHhhccchHH
Confidence 9999999999999999999999999999999999864422111 0000 0124578
Q ss_pred cccccceEEEEEEEecCCCCccceeeeeeeeeecccccc-CCHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEeee
Q 003960 599 IQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWV-ESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIH 677 (783)
Q Consensus 599 I~~lF~g~l~~~i~C~~C~~~s~~~e~f~~LsL~I~~~~-~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~ 677 (783)
|.+.|.|+..++++|..|++.++++.+|..|.+|++... ..|+|||.+|.++|.++|++.|.|++|+++..+.|++.|.
T Consensus 224 v~~~f~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v~~~~l~eC~~~f~~~e~L~g~d~W~CpkC~~k~ss~K~~~I~ 303 (415)
T COG5533 224 VAKTFFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQECIDRFYEEEKLEGKDAWRCPKCGRKESSRKRMEIL 303 (415)
T ss_pred HHHHHhhhhhhhhhhhhcCCceeEEeccceeeeccchheeecHHHHHHHhhhHHhhcCcccccCchhcccccchheEEEE
Confidence 899999999999999999999999999999999998632 3599999999999999999999999999999999999999
Q ss_pred cCCceEEEEEEeeecC--cccccceEEe----cCCccCC-CccccCCCCCCCcEEEEEEEEEecCCCCCCCCeEEEEEEc
Q 003960 678 EAPNILTIVLKRFQEG--RYGKINKCIT----FPEMLDM-MPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKD 750 (783)
Q Consensus 678 ~lP~iLiIqL~RF~~~--~~~Ki~~~V~----fP~~LDL-~~~~~~~~~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~ 750 (783)
.+|++||||++||... ...|++.+-- +|.+... ..|-.+.+-.+.+|.|+|||||.|..+ +|||+++|+.
T Consensus 304 ~lP~~LII~i~RF~i~V~~~~kiD~p~gw~~~~~~e~~v~~~f~~~~~~~P~~Y~L~gv~Ch~G~L~---gGHY~s~v~~ 380 (415)
T COG5533 304 VLPDVLIIHISRFHISVMGRKKIDTPQGWKNTASVEVNVTLLFNNGIGYIPRKYSLLGVVCHNGTLN---GGHYFSEVKR 380 (415)
T ss_pred ecCceEEEEeeeeeEEeecccccCCCcchhccCCceecccccccCCCCCCccceeEEEEEeecceec---CceeEEeeee
Confidence 9999999999999621 1223332211 1111111 111122333578999999999999655 9999999998
Q ss_pred CCCCEEEEcCCeeeeeCCCc-cCCCCcEEEEEEC
Q 003960 751 MQGTWFRIDDTQVHPVPMSQ-VMSEGAYMLFYMR 783 (783)
Q Consensus 751 ~~~~W~~fNDs~Vt~vs~e~-v~~~~aYILfY~R 783 (783)
++.|+.|||+.|++++-.. .....+|||||+|
T Consensus 381 -~~~W~~~dDs~vr~~~~~t~~~~pSsYilFY~r 413 (415)
T COG5533 381 -SGTWNVYDDSQVRKGSRTTSGSHPSSYILFYTR 413 (415)
T ss_pred -cCceEEechhheeeccceecccCCcceEEEEEe
Confidence 7999999999999986542 2335789999997
No 16
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.7e-46 Score=391.02 Aligned_cols=210 Identities=41% Similarity=0.679 Sum_probs=190.0
Q ss_pred ccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCcccCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHhcccccCC
Q 003960 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGD 558 (783)
Q Consensus 479 GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~~~~~~~~l~~qL~~L~~~L~s~~~~isP~~fl~~l~~~~~~f~~ 558 (783)
||.|+||||||||+||+|+++|+||+++....
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~------------------------------------------------ 32 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL------------------------------------------------ 32 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH------------------------------------------------
Confidence 89999999999999999999999999986411
Q ss_pred CccccHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCccc-eeeeeeeeeeccccc-
Q 003960 559 GSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESE-RYENIMDLTLEIYGW- 636 (783)
Q Consensus 559 g~QQDA~EFL~~LLd~L~~e~~~~~~~~~~~~~~~~~~siI~~lF~g~l~~~i~C~~C~~~s~-~~e~f~~LsL~I~~~- 636 (783)
.||||+|||..||+.|+. .+.++|.|.+...++|..|+..+. +.++|+.|+|+|+..
T Consensus 33 -~QqDa~EFl~~ll~~l~~--------------------~i~~~F~g~~~~~i~C~~C~~~s~~~~e~f~~LsL~ip~~~ 91 (240)
T cd02662 33 -EQQDAHELFQVLLETLEQ--------------------LLKFPFDGLLASRIVCLQCGESSKVRYESFTMLSLPVPNQS 91 (240)
T ss_pred -hhcCHHHHHHHHHHHHHH--------------------hccCccccEEEEEEEeCCCCCccCcceeeeeeeEecccccC
Confidence 899999999999999983 367899999999999999999866 599999999999975
Q ss_pred ---cCCHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEeeecCCceEEEEEEeeecCc---ccccceEEecCCccCC
Q 003960 637 ---VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGR---YGKINKCITFPEMLDM 710 (783)
Q Consensus 637 ---~~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~~lP~iLiIqL~RF~~~~---~~Ki~~~V~fP~~LDL 710 (783)
..+|+++|+.|+.+|.+++ |.|++| +..|.++|++|+|||+||..+. ..|++..|.||+.|
T Consensus 92 ~~~~~sl~~~L~~~~~~E~l~~---~~C~~C--------~~~i~~lP~vLii~LkRF~~~~~~~~~K~~~~v~fp~~l-- 158 (240)
T cd02662 92 SGSGTTLEHCLDDFLSTEIIDD---YKCDRC--------QTVIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPERL-- 158 (240)
T ss_pred CCCCCCHHHHHHHhcCcccccC---cCCCCC--------eEEeecCCcEEEEEEEEEEEcCCCceeeeccEEECCCcc--
Confidence 4699999999999999987 899999 5679999999999999997543 47999999999988
Q ss_pred CccccCCCCCCCcEEEEEEEEEecCCCCCCCCeEEEEEEcC---------------------CCCEEEEcCCeeeeeCCC
Q 003960 711 MPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM---------------------QGTWFRIDDTQVHPVPMS 769 (783)
Q Consensus 711 ~~~~~~~~~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~---------------------~~~W~~fNDs~Vt~vs~e 769 (783)
....|+|+|||+|.|.. ++|||++|+|.+ .++||+|||+.|++++++
T Consensus 159 ---------~~~~Y~L~avi~H~G~~---~~GHY~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~ 226 (240)
T cd02662 159 ---------PKVLYRLRAVVVHYGSH---SSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPWWRISDTTVKEVSES 226 (240)
T ss_pred ---------CCceEEEEEEEEEeccC---CCceEEEEEeCCCcccccccccccccccccCccCCCEEEEechheEEeCHH
Confidence 35789999999999973 699999999984 389999999999999999
Q ss_pred cc-CCCCcEEEEEE
Q 003960 770 QV-MSEGAYMLFYM 782 (783)
Q Consensus 770 ~v-~~~~aYILfY~ 782 (783)
+| ....||||||+
T Consensus 227 ~v~~~~~aY~LfYe 240 (240)
T cd02662 227 EVLEQKSAYMLFYE 240 (240)
T ss_pred HHhhCCCEEEEEeC
Confidence 99 88899999996
No 17
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-45 Score=390.91 Aligned_cols=375 Identities=20% Similarity=0.309 Sum_probs=297.9
Q ss_pred CCCCCCccccCCCccceecccccchhhccCCCCcchhhhccccCCCCCCCCCcccccccccccCcccccccccchhhhhh
Q 003960 369 MNPMGTKNCKSAKSCTKVVGDQSCLEKERKGPIADESKAARVRDTIPAQGSNVVSKMGIMKMMGLRKSTKLRQDSSELWH 448 (783)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gi~k~~~l~~~~kt~~s~~el~~ 448 (783)
-||..-|+-+..+++-.+ |+|.=-++ -|.. . +.+...|+..||| |+.+..++++++++|+.
T Consensus 217 ~Hplavkl~Sls~~~~di---yCY~CD~e-------~R~~---~--n~n~~s~~~~fGi----nIa~~~~~Eksl~~lq~ 277 (749)
T COG5207 217 QHPLAVKLPSLSKEDCDI---YCYLCDSE-------IRSR---Y--NSNENSVTIDFGI----NIADGKTEEKSLRKLQS 277 (749)
T ss_pred CCceEEEccccccccccE---EEEecCcc-------cccC---C--cccccceeeeecc----chhhccchHHHHHHHHH
Confidence 388887877766766544 45542221 1110 0 0134678889999 99999999999999999
Q ss_pred hhhcCceeecchhhhhhccccccccCcCCcccccCCCcccHHHHHHHHhcCHHHHHHHHh--cccCcccCCCCchHHHHH
Q 003960 449 DQHRKLKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLR--RSHSSACCGKDWCLMCEL 526 (783)
Q Consensus 449 d~n~~~~~~~~~e~~~~~~~~~~~~~~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~--~~~~~~~~~~~~~l~~qL 526 (783)
++|.+|++...-+.... .+..+...++||.|+||+||+|||||.|+....+..-+.. ..+......+..+|.|||
T Consensus 278 eqn~nw~F~~~~~~~~s---k~~~~ps~~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P~~~l~CQl 354 (749)
T COG5207 278 EQNANWEFLEKKRAPES---KGESVPSPYVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECLFCQL 354 (749)
T ss_pred hhhcCcchhccccCchh---hcccCCCCccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecCCchhHHHHH
Confidence 99888887655443211 1112212379999999999999999999998877655433 333344556788999999
Q ss_pred HHHHHHHHhCC-----CCCChHHHHHHHHhcccccCCCccccHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccccccccc
Q 003960 527 EQHVMMLRESA-----GPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQH 601 (783)
Q Consensus 527 ~~L~~~L~s~~-----~~isP~~fl~~l~~~~~~f~~g~QQDA~EFL~~LLd~L~~e~~~~~~~~~~~~~~~~~~siI~~ 601 (783)
.+|+..+.... ..|+|.+|+..++..++.|+..+||||+|||.+||+.|.+-.. .-..+.|.+
T Consensus 355 ~kll~~mk~~p~~~y~ngi~p~~fk~~igq~h~eFg~~~QQDA~EFLlfLL~kirk~~~------------S~~~~~It~ 422 (749)
T COG5207 355 MKLLSKMKETPDNEYVNGISPLDFKMLIGQDHPEFGKFAQQDAHEFLLFLLEKIRKGER------------SYLIPPITS 422 (749)
T ss_pred HHHHhhccCCCCccccCCcChhhHHHHHcCCchhhhhhhhhhHHHHHHHHHHHHhhccc------------hhcCCCcch
Confidence 99999987533 5799999999999999999999999999999999999976211 113356889
Q ss_pred ccceEEEEEEEecCCCCccceeeeeeeeeecccc--ccCCHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEeeecC
Q 003960 602 TFGGRLWSKVKCLRCSHESERYENIMDLTLEIYG--WVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEA 679 (783)
Q Consensus 602 lF~g~l~~~i~C~~C~~~s~~~e~f~~LsL~I~~--~~~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~~l 679 (783)
+|.+.++.++.|..|+.+++.+++...+.+++.+ ...++.++++.|+.+++++ |.|++|+.+..|.++..|++|
T Consensus 423 lf~Fe~e~rlsC~~C~~v~ySye~~~~i~i~le~n~E~~di~~~v~a~f~pdtiE----~~CenCk~K~~a~~k~~~ksl 498 (749)
T COG5207 423 LFEFEVERRLSCSGCMDVSYSYESMLMICIFLEGNDEPQDIRKSVEAFFLPDTIE----WSCENCKGKKKASRKPFIKSL 498 (749)
T ss_pred hhhhhhcceecccccccccccccceEEEEeecccCcchhhHHHHHHheECcccee----eehhhhcCcccccccchhhcc
Confidence 9999999999999999999999999988888764 3568999999999999999 999999999999999999999
Q ss_pred CceEEEEEEeeecCcc--cccceEEecC--CccCCCccccCC--------------------------------------
Q 003960 680 PNILTIVLKRFQEGRY--GKINKCITFP--EMLDMMPFMTGT-------------------------------------- 717 (783)
Q Consensus 680 P~iLiIqL~RF~~~~~--~Ki~~~V~fP--~~LDL~~~~~~~-------------------------------------- 717 (783)
|++||+|..||...++ .|+..++.+. ..+++..|++..
T Consensus 499 Pk~LIlq~~R~~lqny~v~kls~pi~~~~D~m~~~~s~msk~~PqtEn~LPdedE~~t~Nqs~I~qL~~mGfp~~~~~rA 578 (749)
T COG5207 499 PKYLILQVGRYSLQNYKVEKLSDPIEMRSDDMIKLGSFMSKFDPQTENLLPDEDEAFTDNQSLIRQLVDMGFPEEDAARA 578 (749)
T ss_pred CceeEEecceeeccceeehhccCceEEccccccchhhHhhccCCcccccCCccccccCchHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999987665 5777777665 357776665420
Q ss_pred --------------------------------------------------------------------------------
Q 003960 718 -------------------------------------------------------------------------------- 717 (783)
Q Consensus 718 -------------------------------------------------------------------------------- 717 (783)
T Consensus 579 L~~tgNqDaEsAMNWLFqHMdDPdlndP~~~~~~vPKkDkeVdE~~~~Slle~Gln~n~~Rkal~~~n~d~~r~V~w~~N 658 (749)
T COG5207 579 LGITGNQDAESAMNWLFQHMDDPDLNDPFVPPPNVPKKDKEVDESKARSLLENGLNPNLCRKALMDMNTDSKRRVVWCIN 658 (749)
T ss_pred HhhccCcchHHHHHHHHhhccCcccCCCCCCCCCCCcccccccHHHHHHHHHcCCCHHHHHHHHHHccCCchheEEEEEe
Confidence
Q ss_pred -CC----------------------CCCcEEEEEEEEEecCCCCCCCCeEEEEEEcC---CCCEEEEcCCeeeeeCCCcc
Q 003960 718 -GD----------------------TPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM---QGTWFRIDDTQVHPVPMSQV 771 (783)
Q Consensus 718 -~~----------------------~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~---~~~W~~fNDs~Vt~vs~e~v 771 (783)
++ ...-|.|.|||+|.|+ ++++||||+|||+. .-+|++|||+++-.++.-++
T Consensus 659 ~~D~tF~EP~v~~eeqqqk~~~~~STa~PYaLtAvI~HkG~--s~haGHYv~fIrk~~~~K~kWvl~nDek~v~~~svE~ 736 (749)
T COG5207 659 DDDGTFPEPEVPNEEQQQKKDLGYSTAKPYALTAVICHKGD--SIHAGHYVWFIRKNGKDKWKWVLKNDEKTVLNSSVEV 736 (749)
T ss_pred CCCCCCCCCCCCchhhhhcccccccccCcccceeEEeccCC--cccccceEEEEecccCcceeEEEEccchheehhhHHH
Confidence 00 1235999999999999 99999999999984 23799999999988877788
Q ss_pred CCCCcEEEEEEC
Q 003960 772 MSEGAYMLFYMR 783 (783)
Q Consensus 772 ~~~~aYILfY~R 783 (783)
++.++|||||+|
T Consensus 737 ~k~nGYiylf~R 748 (749)
T COG5207 737 LKDNGYIYLFKR 748 (749)
T ss_pred HhhCCeEEEEec
Confidence 899999999998
No 18
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.1e-44 Score=370.84 Aligned_cols=220 Identities=40% Similarity=0.726 Sum_probs=200.8
Q ss_pred ccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCcccCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHhcccccCC
Q 003960 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGD 558 (783)
Q Consensus 479 GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~~~~~~~~l~~qL~~L~~~L~s~~~~isP~~fl~~l~~~~~~f~~ 558 (783)
||.|.||+||+||+||+|++
T Consensus 1 gl~n~~~~cy~n~~~Q~l~~------------------------------------------------------------ 20 (230)
T cd02674 1 GLRNLGNTCYMNSILQCLSA------------------------------------------------------------ 20 (230)
T ss_pred CccccCcchhhhHHHHHHHH------------------------------------------------------------
Confidence 99999999999999999998
Q ss_pred CccccHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCccceeeeeeeeeecccccc-
Q 003960 559 GSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWV- 637 (783)
Q Consensus 559 g~QQDA~EFL~~LLd~L~~e~~~~~~~~~~~~~~~~~~siI~~lF~g~l~~~i~C~~C~~~s~~~e~f~~LsL~I~~~~- 637 (783)
.||||+||+.+||+.|+ ++|.++|++++..+++|..|+..+.+.++|+.|+|++|...
T Consensus 21 -~QqDa~Ef~~~ll~~l~--------------------~~i~~~F~~~~~~~~~C~~C~~~~~~~e~~~~l~l~ip~~~~ 79 (230)
T cd02674 21 -DQQDAQEFLLFLLDGLH--------------------SIIVDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSLPIPSGSG 79 (230)
T ss_pred -hhhhHHHHHHHHHHHHh--------------------hhHHheeCCEEeCcEEcCCCcCCcceecceeEEEEecccccC
Confidence 79999999999999997 24789999999999999999999999999999999998643
Q ss_pred ----CCHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEeeecCCceEEEEEEeeecC--cccccceEEecCC-ccCC
Q 003960 638 ----ESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG--RYGKINKCITFPE-MLDM 710 (783)
Q Consensus 638 ----~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~~lP~iLiIqL~RF~~~--~~~Ki~~~V~fP~-~LDL 710 (783)
.+|+++|+.|+.++.++|.+++.|++|++++.+.++..|.++|++|+|+|+||... ...|++..|.||. .||+
T Consensus 80 ~~~~~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~~~~~K~~~~v~~~~~~l~l 159 (230)
T cd02674 80 DAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDL 159 (230)
T ss_pred CCCCCCHHHHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecCCCCcccCCceEecccccccc
Confidence 59999999999999999999999999999999999999999999999999999865 3579999999994 6899
Q ss_pred Ccccc-CCCCCCCcEEEEEEEEEecCCCCCCCCeEEEEEEcCC-CCEEEEcCCeeeeeCCCccCCCCcEEEEEE
Q 003960 711 MPFMT-GTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQ-GTWFRIDDTQVHPVPMSQVMSEGAYMLFYM 782 (783)
Q Consensus 711 ~~~~~-~~~~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~~-~~W~~fNDs~Vt~vs~e~v~~~~aYILfY~ 782 (783)
.+|+. .......+|+|+|||+|.|. . ++|||+||+|..+ ++||+|||+.|++++.+++....||||||+
T Consensus 160 ~~~~~~~~~~~~~~Y~L~~vI~H~G~--~-~~GHY~~~~~~~~~~~W~~fnD~~V~~i~~~~~~~~~~YlL~Y~ 230 (230)
T cd02674 160 TPYVDTRSFTGPFKYDLYAVVNHYGS--L-NGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230 (230)
T ss_pred ccccCcccCCCCceEEEEEEEEeeCC--C-CCcEEEEEEECCCCCceEEEcCCeEEEcCHHHccCCCceEEEeC
Confidence 88853 23345678999999999997 3 6999999999864 899999999999999999988999999996
No 19
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=6.7e-42 Score=358.30 Aligned_cols=249 Identities=37% Similarity=0.634 Sum_probs=199.8
Q ss_pred CcccccCCCcccHHHHHHHHhcCHHHHHHHHhcc-----cCcccCCCCchHHHHHHHHHHHHHhC---CCCCChHHHHHH
Q 003960 477 PRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRS-----HSSACCGKDWCLMCELEQHVMMLRES---AGPLSPGRILSH 548 (783)
Q Consensus 477 ~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~-----~~~~~~~~~~~l~~qL~~L~~~L~s~---~~~isP~~fl~~ 548 (783)
|+||.|.||||||||+||+|+++|+|+++++... ..........+++++|+.++..|+.. ...+.|..|+..
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~ 80 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA 80 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence 6899999999999999999999999999998641 12222334567999999999999976 467999999999
Q ss_pred HHhcccccCCCccccHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCccceeeeeee
Q 003960 549 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMD 628 (783)
Q Consensus 549 l~~~~~~f~~g~QQDA~EFL~~LLd~L~~e~~~~~~~~~~~~~~~~~~siI~~lF~g~l~~~i~C~~C~~~s~~~e~f~~ 628 (783)
+....+.|..+.||||+|||..||+.|+.++.................+++.++|.+++...+.|..|+..
T Consensus 81 l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~c~~c~~~--------- 151 (269)
T PF00443_consen 81 LSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFKRKSWKNTNSSEDSLISDLFGGQFESSIKCSSCKNS--------- 151 (269)
T ss_dssp HHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSSHHHHHHHHCCEESHHHHHH-EEEEEEEEETTTTCE---------
T ss_pred ccccccccccccccchhhhhcccccccchhhcccccccccccccccccccccccccccccccccccccccc---------
Confidence 99999899999999999999999999998764421100001112235678899999999999999999775
Q ss_pred eeeccccccCCHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEeeecCCceEEEEEEeeec----CcccccceEEec
Q 003960 629 LTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQE----GRYGKINKCITF 704 (783)
Q Consensus 629 LsL~I~~~~~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~~lP~iLiIqL~RF~~----~~~~Ki~~~V~f 704 (783)
...|.++|++|+|+|+||.+ +...|+...|.|
T Consensus 152 --------------------------------------------~~~~~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~ 187 (269)
T PF00443_consen 152 --------------------------------------------QSSISSLPPILIIQLKRFEFDQETGRSKKINNPVEF 187 (269)
T ss_dssp --------------------------------------------EEEEEEBBSEEEEEEE-EEEESTSSEEEE--CEEB-
T ss_pred --------------------------------------------ccccccccceeeeccccceecccccccccccccccc
Confidence 45789999999999999942 235899999999
Q ss_pred C-CccCCCccccCCCC---CCCcEEEEEEEEEecCCCCCCCCeEEEEEEcCC-CCEEEEcCCeeeeeCCCccCC---CCc
Q 003960 705 P-EMLDMMPFMTGTGD---TPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQ-GTWFRIDDTQVHPVPMSQVMS---EGA 776 (783)
Q Consensus 705 P-~~LDL~~~~~~~~~---~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~~-~~W~~fNDs~Vt~vs~e~v~~---~~a 776 (783)
| +.|||.+++..+.. ....|+|+|||+|.|. .++|||+||||+.+ ++|++|||++|++++.++|.. ..|
T Consensus 188 ~~~~l~l~~~~~~~~~~~~~~~~Y~L~avi~H~G~---~~~GHY~a~v~~~~~~~W~~~dD~~v~~~~~~~v~~~~~~~~ 264 (269)
T PF00443_consen 188 PLEELDLSPYLEKNNSECQSNVKYRLVAVIVHYGS---ADSGHYVAYVRDSDDGKWYKFDDSRVTEVSWEEVIKSSNSTA 264 (269)
T ss_dssp -SSEEEGGGGBSSCCCTHTSSSEEEEEEEEEEESS---TTSEEEEEEEEETTTTEEEEEETTEEEEESHHHHCCGGSTCE
T ss_pred Cchhhhhhhhhccccccccccceeeehhhhccccc---cccceEEEeeccccCCeEEEeeCCceEECCHHHHhhccCCce
Confidence 9 79999999876543 3689999999999995 45999999998854 469999999999999999988 899
Q ss_pred EEEEE
Q 003960 777 YMLFY 781 (783)
Q Consensus 777 YILfY 781 (783)
|||||
T Consensus 265 yll~Y 269 (269)
T PF00443_consen 265 YLLFY 269 (269)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 99999
No 20
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-42 Score=397.83 Aligned_cols=306 Identities=33% Similarity=0.505 Sum_probs=254.5
Q ss_pred cCCcccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCcc----cCCCCchHHHHHHHHHHHHHhC--CCCCChHHHHHH
Q 003960 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSA----CCGKDWCLMCELEQHVMMLRES--AGPLSPGRILSH 548 (783)
Q Consensus 475 ~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~----~~~~~~~l~~qL~~L~~~L~s~--~~~isP~~fl~~ 548 (783)
.+.+||.|+|||||||++||||+.++.|+..++...+... .......+..++.+++..++.. ...+.|..|+..
T Consensus 299 ~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~~~~s~~P~~f~~~ 378 (653)
T KOG1868|consen 299 FGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGHGQFSVLPRRFIRV 378 (653)
T ss_pred cCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCCCceecCcHHHHHH
Confidence 6689999999999999999999999999977765433222 1223446777777777777654 346889999999
Q ss_pred HHhcccccCCCccccHHHHHHHHHHHHHHHHhhhcCC-------------CCCCC-----------Cccccccccccccc
Q 003960 549 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGG-------------ESKVD-----------PRLQETTFIQHTFG 604 (783)
Q Consensus 549 l~~~~~~f~~g~QQDA~EFL~~LLd~L~~e~~~~~~~-------------~~~~~-----------~~~~~~siI~~lF~ 604 (783)
+.++.+.|.+..|||++||+.++++.||+++.+.-.. ..+.. ........|.++|.
T Consensus 379 ~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~d~~i~~lf~ 458 (653)
T KOG1868|consen 379 LKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEEDSKIGDLFV 458 (653)
T ss_pred HhhcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccccchHHHHHHH
Confidence 9999999999899999999999999999998663210 00000 00112334899999
Q ss_pred eEEEEEEEecCCCCccceeeeeeeeeecccccc-----CCHHHHHhhcCCCccCCCCCccccCccCcceeeE--EEEeee
Q 003960 605 GRLWSKVKCLRCSHESERYENIMDLTLEIYGWV-----ESLEDALTQFTSPEDLDGENMYKCARCATYVRAR--KQLSIH 677 (783)
Q Consensus 605 g~l~~~i~C~~C~~~s~~~e~f~~LsL~I~~~~-----~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~--k~~~i~ 677 (783)
|++++.++|..|+..+.+++.|++++|+|+... .+|++|+..|+..|.+++++.|.|+.|+.+.... |++.|.
T Consensus 459 gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~~~~~~L~~C~~~ft~~ekle~~~~w~Cp~c~~~~~~~~lK~~~i~ 538 (653)
T KOG1868|consen 459 GQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFAGGKVSLEDCLSLFTKEEKLEGDEAWLCPRCKHKESSKTLKKLTIL 538 (653)
T ss_pred HHHHhheehhhcCCcceeeecceeeEEecccccccccccchHhhhccccchhhcccccccCCccccCcccccccceeeee
Confidence 999999999999999999999999999998533 4599999999999999999999999999999985 999999
Q ss_pred cCCceEEEEEEeeecC--cccccceEEecCC-ccCCCccccCCCCCCCcEEEEEEEEEecCCCCCCCCeEEEEEEcC-CC
Q 003960 678 EAPNILTIVLKRFQEG--RYGKINKCITFPE-MLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM-QG 753 (783)
Q Consensus 678 ~lP~iLiIqL~RF~~~--~~~Ki~~~V~fP~-~LDL~~~~~~~~~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~-~~ 753 (783)
+||++|+|||+||... ...|....|+||. .+++.++.....+....|+|+|||+|.|+ ..+|||+||+++. .+
T Consensus 539 ~lp~iLiihL~Rf~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~Gt---l~sGHYta~~~~~~~~ 615 (653)
T KOG1868|consen 539 RLPKILIIHLKRFSSDGNSFNKLSTGVDFPLREADLSPRFAEKGNNPKSYRLYAVVNHSGT---LNSGHYTAYVYKNEKQ 615 (653)
T ss_pred cCCHHHHHHHHHhccCcccccccceeeccchHhhhhchhccccCCCccceeeEEEEeccCc---ccCCceEEEEeecCCC
Confidence 9999999999999866 4578889999995 56666666666666778999999999995 4599999999874 67
Q ss_pred CEEEEcCCeeeeeCCCccCCCCcEEEEEEC
Q 003960 754 TWFRIDDTQVHPVPMSQVMSEGAYMLFYMR 783 (783)
Q Consensus 754 ~W~~fNDs~Vt~vs~e~v~~~~aYILfY~R 783 (783)
.|+.|||+.|+.+....+....||||||+|
T Consensus 616 ~W~~fdDs~Vs~~~~~~~~~s~aYIlFY~~ 645 (653)
T KOG1868|consen 616 RWFTFDDSEVSPISETDVGSSSAYILFYER 645 (653)
T ss_pred ceEEecCeeeeccccccccCCCceEEEeec
Confidence 899999999999988888888999999987
No 21
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.6e-41 Score=353.41 Aligned_cols=238 Identities=25% Similarity=0.429 Sum_probs=190.6
Q ss_pred cccCCCcccHHHHHHHHhcCHHHHHHHHhcccCcccCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHhcccccCCC
Q 003960 480 LLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGDG 559 (783)
Q Consensus 480 L~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~~~~~~~~l~~qL~~L~~~L~s~~~~isP~~fl~~l~~~~~~f~~g 559 (783)
|.|.||+||+||.+|+|.+ +++.++.|.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~--------------------------------------------------i~~~~~~F~~~ 31 (245)
T cd02673 2 LVNTGNSCYFNSTMQALSS--------------------------------------------------IGKINTEFDND 31 (245)
T ss_pred ceecCCeeeehhHHHHHHH--------------------------------------------------HhhhhhhcCCC
Confidence 7899999999999999874 34566789999
Q ss_pred ccccHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCccceeeeeeeeeeccccc-cC
Q 003960 560 SQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGW-VE 638 (783)
Q Consensus 560 ~QQDA~EFL~~LLd~L~~e~~~~~~~~~~~~~~~~~~siI~~lF~g~l~~~i~C~~C~~~s~~~e~f~~LsL~I~~~-~~ 638 (783)
+||||||||++||+.|++++............. .......++|+|++++.++|..|++++.+.++|+.|+|+++.. ..
T Consensus 32 ~QQDAhEFL~~LLd~l~~~~~~~~~~~~~~~~~-~~~~~~~~~F~~~l~s~i~C~~C~~~s~~~e~~~~L~L~i~~~~~~ 110 (245)
T cd02673 32 DQQDAHEFLLTLLEAIDDIMQVNRTNVPPSNIE-IKRLNPLEAFKYTIESSYVCIGCSFEENVSDVGNFLDVSMIDNKLD 110 (245)
T ss_pred chhhHHHHHHHHHHHHHHHHHhhcccCCCCccc-ccccCHhHheeeEEEeEEEecCCCCeeeeccccceeccccccCCcc
Confidence 999999999999999998775432211100000 0111235789999999999999999999999999999999874 45
Q ss_pred CHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEeeecCCceEEEEEEeeecCcccccceEEecCCccCCCccccCCC
Q 003960 639 SLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGRYGKINKCITFPEMLDMMPFMTGTG 718 (783)
Q Consensus 639 sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~~lP~iLiIqL~RF~~~~~~Ki~~~V~fP~~LDL~~~~~~~~ 718 (783)
.+++++..|...+.++ |.|++|+.. .+.++.+|.++|++|+|||+||.... +....+.+ ..++|.+|..
T Consensus 111 ~le~l~~~~~~~~~~e----~~C~~C~~~-~a~k~~~i~~~P~vL~i~lkRf~~~~--~~~~~~~~-~~~~~~~~~~--- 179 (245)
T cd02673 111 IDELLISNFKTWSPIE----KDCSSCKCE-SAISSERIMTFPECLSINLKRYKLRI--ATSDYLKK-NEEIMKKYCG--- 179 (245)
T ss_pred hHHHHHHHhhcccccC----ccCCCCCCc-cceeechhhhCChhhEEeeEeeeecc--cccccccc-cccccccccC---
Confidence 6888888888877775 899999986 78888899999999999999996432 22222222 2456766664
Q ss_pred CCCCcEEEEEEEEEecCCCCCCCCeEEEEEEcC--CCCEEEEcCCeeeeeCCCccC---CCCcEEEEEE
Q 003960 719 DTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM--QGTWFRIDDTQVHPVPMSQVM---SEGAYMLFYM 782 (783)
Q Consensus 719 ~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~--~~~W~~fNDs~Vt~vs~e~v~---~~~aYILfY~ 782 (783)
....|+|+|||+|.|. +.++|||+||+|.. +++||+|||+.|+++++++|. ...||||||+
T Consensus 180 -~~~~Y~L~~VV~H~G~--~~~~GHY~a~vk~~~~~~~Wy~fnD~~V~~v~~~~v~~~~~~~aYiLFY~ 245 (245)
T cd02673 180 -TDAKYSLVAVICHLGE--SPYDGHYIAYTKELYNGSSWLYCSDDEIRPVSKNDVSTNARSSGYLIFYD 245 (245)
T ss_pred -CCceEEEEEEEEECCC--CCCCceEEEEEEcCCCCCeEEEeeCceeeEcCHHHHhhccCCceEEEEEC
Confidence 3567999999999997 67799999999975 579999999999999999988 4689999996
No 22
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-42 Score=384.55 Aligned_cols=348 Identities=24% Similarity=0.401 Sum_probs=278.2
Q ss_pred CCCCCcccccccccccCcccccccccchhhhhhhhh----cCceeecchhh--hhhccccccccCcCCcccccCCCcccH
Q 003960 416 AQGSNVVSKMGIMKMMGLRKSTKLRQDSSELWHDQH----RKLKMLFPYEE--FLKLFQYEVIDLLSPRGLLNCGNSCYA 489 (783)
Q Consensus 416 ~~~~~~L~~~Gi~k~~~l~~~~kt~~s~~el~~d~n----~~~~~~~~~e~--~~~~~~~~~~~~~~~~GL~NlGNTCYm 489 (783)
|.=+...+.||..++.+|.+..-..+....+..+-. .-.+.+-.+.+ +..+..+.....+|++||+|.|.||||
T Consensus 126 hrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkdPTGVLWHsF~nYnSKkeTGYVGlrNqGATCYm 205 (1089)
T COG5077 126 HRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKDPTGVLWHSFLNYNSKKETGYVGLRNQGATCYM 205 (1089)
T ss_pred ccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeCCccceeecccccccccceeeeeeccCCceeeH
Confidence 334555678999988888887654333333332221 11233333332 223334444445999999999999999
Q ss_pred HHHHHHHhcCHHHHHHHHhcccCcccCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHhcccccCCCccccHHHHHH
Q 003960 490 NAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGDGSQEDAHEFLR 569 (783)
Q Consensus 490 NSVLQ~L~~ip~fr~~ll~~~~~~~~~~~~~~l~~qL~~L~~~L~s~~~~isP~~fl~~l~~~~~~f~~g~QQDA~EFL~ 569 (783)
||+||.||.+..||+.+.... .+.......+..+|+++|..|+....+++..+|...++.. .+....|+|.|||-+
T Consensus 206 NSLlQslffi~~FRk~Vy~ip--Td~p~grdSValaLQr~Fynlq~~~~PvdTteltrsfgWd--s~dsf~QHDiqEfnr 281 (1089)
T COG5077 206 NSLLQSLFFIAKFRKDVYGIP--TDHPRGRDSVALALQRLFYNLQTGEEPVDTTELTRSFGWD--SDDSFMQHDIQEFNR 281 (1089)
T ss_pred HHHHHHHHHHHHHHHHhhcCC--CCCCCccchHHHHHHHHHHHHhccCCCcchHHhhhhcCcc--cchHHHHHhHHHHHH
Confidence 999999999999999886533 2223345568899999999999999999999998766333 445568999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCccceeeeeeeeeeccccccCCHHHHHhhcCC
Q 003960 570 LLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTS 649 (783)
Q Consensus 570 ~LLd~L~~e~~~~~~~~~~~~~~~~~~siI~~lF~g~l~~~i~C~~C~~~s~~~e~f~~LsL~I~~~~~sLed~L~~~~~ 649 (783)
.|.|.|+..+... .-...++.+|-|++.+.++|.+-..++.+.+.||+|.|++.+ ..+|+++++.|.+
T Consensus 282 Vl~DnLEksmrgt-----------~VEnaln~ifVgkmksyikCvnvnyEsarvedfwdiqlNvK~-~knLqeSfr~yIq 349 (1089)
T COG5077 282 VLQDNLEKSMRGT-----------VVENALNGIFVGKMKSYIKCVNVNYESARVEDFWDIQLNVKG-MKNLQESFRRYIQ 349 (1089)
T ss_pred HHHHHHHHhhcCC-----------hhhhHHhHHHHHHhhceeeEEEechhhhhHHHHHHHHhcccc-hhhHHHHHHHhhh
Confidence 9999998743221 112357899999999999999999999999999999999997 7899999999999
Q ss_pred CccCCCCCccccCccCcceeeEEEEeeecCCceEEEEEEeeec----CcccccceEEecCCccCCCccccCCCC----CC
Q 003960 650 PEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQE----GRYGKINKCITFPEMLDMMPFMTGTGD----TP 721 (783)
Q Consensus 650 ~E~l~g~n~y~C~~C~~~~~a~k~~~i~~lP~iLiIqL~RF~~----~~~~Ki~~~V~fP~~LDL~~~~~~~~~----~~ 721 (783)
.|+++|+|+|.|+. .+.+.|.|..-|.+||++|.+||+||++ +...|+++..+||+++||.+|++.+.+ ..
T Consensus 350 vE~l~GdN~Y~ae~-~GlqdAkKGViFeSlPpVlhlqLKRFeyDfe~d~mvKINDryEFP~eiDl~pfld~da~ksen~d 428 (1089)
T COG5077 350 VETLDGDNRYNAEK-HGLQDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPLEIDLLPFLDRDADKSENSD 428 (1089)
T ss_pred heeccCCccccccc-ccchhhccceeeccCchHHHHHHHHhccccccCceeeecccccCcchhccccccCchhhhhcccC
Confidence 99999999999988 4568899999999999999999999975 456899999999999999999986532 34
Q ss_pred CcEEEEEEEEEecCCCCCCCCeEEEEEEcC-CCCEEEEcCCeeeeeCCCccCC----------------------CCcEE
Q 003960 722 PLYMLYSVVVHLDTQNASFSGHYVSYIKDM-QGTWFRIDDTQVHPVPMSQVMS----------------------EGAYM 778 (783)
Q Consensus 722 ~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~-~~~W~~fNDs~Vt~vs~e~v~~----------------------~~aYI 778 (783)
..|.|+||++|.|+ .+.|||+|++|.. +|+||+|||++|+.+...+|+. -+|||
T Consensus 429 ~vY~LygVlVHsGD---l~~GHyYallKpe~dg~WykfdDtrVtrat~kevleeNfGgd~~~~~k~r~~~~~kRfmsAYm 505 (1089)
T COG5077 429 AVYVLYGVLVHSGD---LHEGHYYALLKPEKDGRWYKFDDTRVTRATEKEVLEENFGGDHPYKDKIRDHSGIKRFMSAYM 505 (1089)
T ss_pred cEEEEEEEEEeccc---cCCceEEEEeccccCCCceeecceehhhHHHHHHHHHhcCCCCCCcccccCCchhhhhhhhhe
Confidence 78999999999996 4599999999943 8999999999999998887763 14899
Q ss_pred EEEEC
Q 003960 779 LFYMR 783 (783)
Q Consensus 779 LfY~R 783 (783)
|+|-|
T Consensus 506 LvYlR 510 (1089)
T COG5077 506 LVYLR 510 (1089)
T ss_pred eeeeh
Confidence 99976
No 23
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9.1e-41 Score=365.63 Aligned_cols=271 Identities=23% Similarity=0.321 Sum_probs=211.8
Q ss_pred CcccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCcc-----------cC---------CCCchHHHHHHHHHHHHHhC
Q 003960 477 PRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSA-----------CC---------GKDWCLMCELEQHVMMLRES 536 (783)
Q Consensus 477 ~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~-----------~~---------~~~~~l~~qL~~L~~~L~s~ 536 (783)
|+||.|+||||||||+||+|+++|+||++++....... .. ....+|+.+|+.||..|+.+
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999987542111 00 01236999999999999876
Q ss_pred C-CCCChHHHHHHHHhcccccCCCccccHHHHHHHHHHHHHHHHhhhcCCC--CCCCCccccccccccccceEEEEEEEe
Q 003960 537 A-GPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGE--SKVDPRLQETTFIQHTFGGRLWSKVKC 613 (783)
Q Consensus 537 ~-~~isP~~fl~~l~~~~~~f~~g~QQDA~EFL~~LLd~L~~e~~~~~~~~--~~~~~~~~~~siI~~lF~g~l~~~i~C 613 (783)
. ..+.|..++..+.. .||||+||+..||+.|+.++....... ..........++|.++|.|++.+.++|
T Consensus 81 ~~~~v~P~~~l~~l~~--------~QQDa~Ef~~~lld~Le~~lk~~~~~~~~~~~~~~~~~~~~I~~lF~G~~~~~i~c 152 (343)
T cd02666 81 NTRSVTPSKELAYLAL--------RQQDVTECIDNVLFQLEVALEPISNAFAGPDTEDDKEQSDLIKRLFSGKTKQQLVP 152 (343)
T ss_pred CCCccCcHHHHHhccc--------cccchHHHHHHHHHHHHHHhcCccccccCcccccccchhhhhhHhceeeEEEEEEe
Confidence 6 68999999876632 899999999999999999865321100 000111234678999999999999999
Q ss_pred cCCC---Cccceeeeeeeeeecccc---------ccCCHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEeeecCCc
Q 003960 614 LRCS---HESERYENIMDLTLEIYG---------WVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPN 681 (783)
Q Consensus 614 ~~C~---~~s~~~e~f~~LsL~I~~---------~~~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~~lP~ 681 (783)
..|+ ..+.+.|+|+.|+|+|+. ...+|.++|+.|+..|. |.++|+
T Consensus 153 ~~~~~~~~~s~~~E~F~~L~l~I~~~~~~~~~~~~~~~L~d~L~~~~~~e~-----------------------~~~~P~ 209 (343)
T cd02666 153 ESMGNQPSVRTKTERFLSLLVDVGKKGREIVVLLEPKDLYDALDRYFDYDS-----------------------LTKLPQ 209 (343)
T ss_pred cccCCCCCCccccceeEEEEEecCcccccccccCCCCCHHHHHHHhcChhh-----------------------hccCCH
Confidence 9997 678999999999999986 67899999999998654 889999
Q ss_pred eEEEEEEeeecC--cccccceEEecCCccCCCccccCC----------------------------CCCCCcEEEEEEEE
Q 003960 682 ILTIVLKRFQEG--RYGKINKCITFPEMLDMMPFMTGT----------------------------GDTPPLYMLYSVVV 731 (783)
Q Consensus 682 iLiIqL~RF~~~--~~~Ki~~~V~fP~~LDL~~~~~~~----------------------------~~~~~~Y~L~gVV~ 731 (783)
+|.|||+ ++.- ...+..++.+||...|..+++... ......|+|+|||+
T Consensus 210 vl~~qlq-~~~~~~~~~~~~dry~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Y~L~avv~ 288 (343)
T cd02666 210 RSQVQAQ-LAQPLQRELISMDRYELPSSIDDIDELIREAIQSESSLVRQAQNELAELKHEIEKQFDDLKSYGYRLHAVFI 288 (343)
T ss_pred HHHHHHh-hcccccchheeeccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceEEEEEEE
Confidence 9999998 2211 124555666666655554443210 11467899999999
Q ss_pred EecCCCCCCCCeEEEEEEcC-CCCEEEEcCCeeeeeCCCccCC------CCcEEEEEE
Q 003960 732 HLDTQNASFSGHYVSYIKDM-QGTWFRIDDTQVHPVPMSQVMS------EGAYMLFYM 782 (783)
Q Consensus 732 H~G~~~s~~sGHYva~Vk~~-~~~W~~fNDs~Vt~vs~e~v~~------~~aYILfY~ 782 (783)
|.|. .++|||++|+|+. ++.||+|||..|++++.+++.. .+||||+|.
T Consensus 289 H~G~---~~~GHY~~~~~~~~~~~W~~~dD~~V~~v~~~ev~~~~~~~~~~pY~l~Yv 343 (343)
T cd02666 289 HRGE---ASSGHYWVYIKDFEENVWRKYNDETVTVVPASEVFLFTLGNTATPYFLVYV 343 (343)
T ss_pred eecC---CCCCeEEEEEEECCCCeEEEEECCeeEEecHHHHhhcccCCCCCCEEEEeC
Confidence 9996 3699999999975 5899999999999999887764 479999994
No 24
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-42 Score=381.94 Aligned_cols=293 Identities=31% Similarity=0.469 Sum_probs=251.4
Q ss_pred cCCcccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCcc-cCC-CCchHHHHHHHHHHHHHhCC-CCCChHHHHHHHHh
Q 003960 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSA-CCG-KDWCLMCELEQHVMMLRESA-GPLSPGRILSHMRS 551 (783)
Q Consensus 475 ~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~-~~~-~~~~l~~qL~~L~~~L~s~~-~~isP~~fl~~l~~ 551 (783)
.+++||+|-|+|||||+++|-|.++|-++.-++...+... ... -...++++++.+|..|..+. ..+-|..|-..++-
T Consensus 93 ~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~s~~e~vl~~lQ~iF~hL~~s~lQyyVPeg~Wk~Fr~ 172 (944)
T KOG1866|consen 93 EGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDMSGDEKVLRHLQVIFGHLAASQLQYYVPEGFWKQFRL 172 (944)
T ss_pred cceeeecCCCchHHHhhhhhhhhhcccccchhhhhcccccchhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHhhc
Confidence 5689999999999999999999999999987765444411 111 12239999999999987654 57889999988888
Q ss_pred cccccCCCccccHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCccceeeeeeeeee
Q 003960 552 ISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTL 631 (783)
Q Consensus 552 ~~~~f~~g~QQDA~EFL~~LLd~L~~e~~~~~~~~~~~~~~~~~~siI~~lF~g~l~~~i~C~~C~~~s~~~e~f~~LsL 631 (783)
........+||||.|||..|||.+++.++. ++ ...++++.|+|.+...-+|..|-+.-...|.|..|+|
T Consensus 173 ~~~pln~reqhDA~eFf~sLld~~De~LKk-lg----------~p~lf~n~f~G~ysdqKIC~~CpHRY~~eE~F~~l~l 241 (944)
T KOG1866|consen 173 WGEPLNLREQHDALEFFNSLLDSLDEALKK-LG----------HPQLFSNTFGGSYSDQKICQGCPHRYECEESFTTLNL 241 (944)
T ss_pred cCCccchHhhhhHHHHHHHHHHHHHHHHHH-hC----------CcHHHHHHhcCccchhhhhccCCcccCccccceeeee
Confidence 888888999999999999999999987654 22 2346789999999999999999999999999999999
Q ss_pred ccccccCCHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEeeecCCceEEEEEEeeecC----cccccceEEecCCc
Q 003960 632 EIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG----RYGKINKCITFPEM 707 (783)
Q Consensus 632 ~I~~~~~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~~lP~iLiIqL~RF~~~----~~~Ki~~~V~fP~~ 707 (783)
+|. ..+|+++|++|.+.|.++|.|.|+|++|+++....|++.|++||.+|+|||+||+++ ...|.+..+.||.+
T Consensus 242 ~i~--~~nLeesLeqfv~gevlEG~nAYhCeKCdeK~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP~~ 319 (944)
T KOG1866|consen 242 DIR--HQNLEESLEQFVKGEVLEGANAYHCEKCDEKVDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRFPRE 319 (944)
T ss_pred ecc--cchHHHHHHHHHHHHHhcCcchhhhhhhhhhhHhHHHHHHhhCChhheehhhhccchhhhccccccchhcccchh
Confidence 998 479999999999999999999999999999999999999999999999999999865 23799999999999
Q ss_pred cCCCccccCC-----------------CCCCCcEEEEEEEEEecCCCCCCCCeEEEEEEcC----CCCEEEEcCCeeeee
Q 003960 708 LDMMPFMTGT-----------------GDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM----QGTWFRIDDTQVHPV 766 (783)
Q Consensus 708 LDL~~~~~~~-----------------~~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~----~~~W~~fNDs~Vt~v 766 (783)
|||.||+..+ ...+.+|+|+|||+|.|. ++.|||++||+.. .++||+|||..|++.
T Consensus 320 ldMePYtvsg~a~~e~~~~~~g~~~e~s~~t~~YeLvGVlvHSGq---AsaGHYySfIk~rr~~~~~kWykfnD~~Vte~ 396 (944)
T KOG1866|consen 320 LDMEPYTVSGVAKLEGENVESGQQLEQSAGTTKYELVGVLVHSGQ---ASAGHYYSFIKQRRGEDGNKWYKFNDGDVTEC 396 (944)
T ss_pred hcCCceeehhhhhhccccCCcCcccccccCcceeEEEEEEEeccc---ccCcchhhhhhhhccCCCCceEeccCcccccc
Confidence 9999997632 124678999999999996 4599999999863 579999999999999
Q ss_pred CCCccCC--------------------CCcEEEEEEC
Q 003960 767 PMSQVMS--------------------EGAYMLFYMR 783 (783)
Q Consensus 767 s~e~v~~--------------------~~aYILfY~R 783 (783)
+..++.. -+||||||+|
T Consensus 397 ~~n~me~~cfGGey~q~~~~~~~rrR~WNAYmlFYer 433 (944)
T KOG1866|consen 397 KMNEMENECFGGEYMQMMKRMSYRRRWWNAYMLFYER 433 (944)
T ss_pred chhhHHHHhhcchhhhcccccchHHHhhhhHHHHHHH
Confidence 8765532 2599999987
No 25
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.1e-39 Score=336.74 Aligned_cols=217 Identities=25% Similarity=0.393 Sum_probs=181.7
Q ss_pred ccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCcccCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHhcccccCC
Q 003960 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGD 558 (783)
Q Consensus 479 GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~~~~~~~~l~~qL~~L~~~L~s~~~~isP~~fl~~l~~~~~~f~~ 558 (783)
||.|.|||||+|+|.|+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 20 (228)
T cd02665 1 GLKNVGNTCWFSAVIQSLFS------------------------------------------------------------ 20 (228)
T ss_pred CccccCcchhHHHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999996
Q ss_pred CccccHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCccceeeeeeeeeeccccccC
Q 003960 559 GSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWVE 638 (783)
Q Consensus 559 g~QQDA~EFL~~LLd~L~~e~~~~~~~~~~~~~~~~~~siI~~lF~g~l~~~i~C~~C~~~s~~~e~f~~LsL~I~~~~~ 638 (783)
.||||+||+..||+.|++.+...... ..+.....++|.++|+|++...+.| |+..+.+.|+|+.|+|+|.+ ..
T Consensus 21 -~QQDa~Ef~~~Lld~Le~~l~~~~~~---~~~~~~~~~~i~~lF~G~~~~~~~~--~~~~s~~~E~F~~L~l~i~~-~~ 93 (228)
T cd02665 21 -QQQDVSEFTHLLLDWLEDAFQAAAEA---ISPGEKSKNPMVQLFYGTFLTEGVL--EGKPFCNCETFGQYPLQVNG-YG 93 (228)
T ss_pred -HHHHHHHHHHHHHHHHHHHhcccccc---ccccccccchHhhceEEEEEEEEEE--CCCcccccCccEEEEEEECC-CC
Confidence 69999999999999999986532111 1122245678999999999987766 77888999999999999987 48
Q ss_pred CHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEeeecCCceEEEEEEeeecC--cccccceEEecCCccCCCccccC
Q 003960 639 SLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG--RYGKINKCITFPEMLDMMPFMTG 716 (783)
Q Consensus 639 sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~~lP~iLiIqL~RF~~~--~~~Ki~~~V~fP~~LDL~~~~~~ 716 (783)
+|++||+.++.++.+++++.+. ...+.++..|.++|++|+|||+||.+. ...|+++.|.||..|
T Consensus 94 ~L~e~L~~~~~ee~l~~~~~~~------~~~~~~~~~i~~lP~vL~i~LkRF~~~~~~~~Ki~~~v~FP~~l-------- 159 (228)
T cd02665 94 NLHECLEAAMFEGEVELLPSDH------SVKSGQERWFTELPPVLTFELSRFEFNQGRPEKIHDKLEFPQII-------- 159 (228)
T ss_pred CHHHHHHHhhhhcccccccccc------hhhhhhhhhhhhCChhhEEEeEeeEEcCCccEECCEEEEeeCcc--------
Confidence 9999999999999998754332 233556678999999999999999864 358999999999887
Q ss_pred CCCCCCcEEEEEEEEEecCCCCCCCCeEEEEEEcC-CCCEEEEcCCeeeeeCCCccCC--------CCcEEEEEE
Q 003960 717 TGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM-QGTWFRIDDTQVHPVPMSQVMS--------EGAYMLFYM 782 (783)
Q Consensus 717 ~~~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~-~~~W~~fNDs~Vt~vs~e~v~~--------~~aYILfY~ 782 (783)
....|+|+|||+|.|. +++|||++|+|+. +++||+|||+.|++++.++|.. ..||||||.
T Consensus 160 ---~~~~Y~L~aVi~H~G~---~~~GHY~~~i~~~~~~~W~~fdD~~V~~~~~~~v~~~~fGg~~~~~AYiLfYv 228 (228)
T cd02665 160 ---QQVPYELHAVLVHEGQ---ANAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGGGRNPSAYCLMYI 228 (228)
T ss_pred ---CCceeEEEEEEEecCC---CCCCEEEEEEEcCCCCEEEEEECCeeEEcCHHHHhhhccCCCCCCceEEEEEC
Confidence 2458999999999996 4699999999864 7899999999999999888864 369999994
No 26
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.4e-39 Score=330.63 Aligned_cols=235 Identities=39% Similarity=0.638 Sum_probs=202.7
Q ss_pred ccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCcccCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHhcccccCC
Q 003960 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGD 558 (783)
Q Consensus 479 GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~~~~~~~~l~~qL~~L~~~L~s~~~~isP~~fl~~l~~~~~~f~~ 558 (783)
||.|.||+||+||+||+|++
T Consensus 1 Gl~N~~n~Cy~ns~lq~l~~------------------------------------------------------------ 20 (255)
T cd02257 1 GLNNLGNTCYLNSVLQALFS------------------------------------------------------------ 20 (255)
T ss_pred CccccCcchHHhHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999998
Q ss_pred CccccHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCccceeeeeeeeeeccccc--
Q 003960 559 GSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGW-- 636 (783)
Q Consensus 559 g~QQDA~EFL~~LLd~L~~e~~~~~~~~~~~~~~~~~~siI~~lF~g~l~~~i~C~~C~~~s~~~e~f~~LsL~I~~~-- 636 (783)
.||||+|||..+|+.|+.++...... ........+.+.++|.+.+...+.|..|+..+.....+..+.|+++..
T Consensus 21 -~q~Da~E~l~~ll~~l~~~~~~~~~~---~~~~~~~~~~i~~~F~~~~~~~~~c~~c~~~~~~~~~~~~l~l~~~~~~~ 96 (255)
T cd02257 21 -EQQDAHEFLLFLLDKLHEELKKSSKR---TSDSSSLKSLIHDLFGGKLESTIVCLECGHESVSTEPELFLSLPLPVKGL 96 (255)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhhccc---ccccccCCchhhhhcccEEeeEEECCCCCCCccCcccceeEEeeccCCCC
Confidence 89999999999999999886543221 111122346799999999999999999998888888888888888865
Q ss_pred -cCCHHHHHhhcCCCccCCCCCccccCccC--cceeeEEEEeeecCCceEEEEEEeeecC---cccccceEEecCCccCC
Q 003960 637 -VESLEDALTQFTSPEDLDGENMYKCARCA--TYVRARKQLSIHEAPNILTIVLKRFQEG---RYGKINKCITFPEMLDM 710 (783)
Q Consensus 637 -~~sLed~L~~~~~~E~l~g~n~y~C~~C~--~~~~a~k~~~i~~lP~iLiIqL~RF~~~---~~~Ki~~~V~fP~~LDL 710 (783)
..+|+++|+.++..+.+++ +.|..|+ ....+.++..|.++|++|+|+++||... ...|++..|.||..|++
T Consensus 97 ~~~~l~~~l~~~~~~e~~~~---~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~k~~~~v~~~~~l~~ 173 (255)
T cd02257 97 PQVSLEDCLEKFFKEEILEG---DNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKLNTKVSFPLELDL 173 (255)
T ss_pred CCCcHHHHHHHhhhhhccCC---CCcccCCCCcccceeEEEecccCCceeEEEeeceeeccccccccCCCeEeCCCcccC
Confidence 4899999999999999987 6788887 6788889999999999999999999864 36899999999999999
Q ss_pred CccccC------CCCCCCcEEEEEEEEEecCCCCCCCCeEEEEEEcCC-CCEEEEcCCeeeeeCCCcc-----CCCCcEE
Q 003960 711 MPFMTG------TGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQ-GTWFRIDDTQVHPVPMSQV-----MSEGAYM 778 (783)
Q Consensus 711 ~~~~~~------~~~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~~-~~W~~fNDs~Vt~vs~e~v-----~~~~aYI 778 (783)
..++.. .......|+|+|||+|.|. ++.+|||+||+|... ++||+|||+.|++++.+++ ....|||
T Consensus 174 ~~~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~--~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~~~~~~~~~~~~yl 251 (255)
T cd02257 174 SPYLSEGEKDSDSDNGSYKYELVAVVVHSGT--SADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEFGSLSSSAYI 251 (255)
T ss_pred ccccccccccccccCCCccEEEEEEEEEecC--CCCCcCeEEEEeCCCCCceEEEeccccEEcCHHHhhhccCCCCceEE
Confidence 888642 3345678999999999998 567999999999865 9999999999999999988 4678999
Q ss_pred EEEE
Q 003960 779 LFYM 782 (783)
Q Consensus 779 LfY~ 782 (783)
|||+
T Consensus 252 l~Y~ 255 (255)
T cd02257 252 LFYE 255 (255)
T ss_pred EEEC
Confidence 9996
No 27
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-39 Score=362.35 Aligned_cols=303 Identities=34% Similarity=0.588 Sum_probs=264.5
Q ss_pred cCCcccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCcccCCC-CchHHHHHHHHHHHHHhCC--CCCChHHHHHHHHh
Q 003960 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGK-DWCLMCELEQHVMMLRESA--GPLSPGRILSHMRS 551 (783)
Q Consensus 475 ~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~~~~~-~~~l~~qL~~L~~~L~s~~--~~isP~~fl~~l~~ 551 (783)
.+.+||.|+|+||+||++||.|.+.+..+...+...+......+ ..++.+++.+++..+++.. .++.|..++..+++
T Consensus 159 ~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~~~~~~~~l~~~~~~~~~~~~s~~~~~~~sp~~~l~~~~k 238 (492)
T KOG1867|consen 159 LGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEPSSSGSSCLVCDLDRLFQALYSGHNRTPYSPFELLNLVWK 238 (492)
T ss_pred ecccccccccHHHHHHHHHHHhhccchhhccchhhhcccCCCCCCCcchhhhhhhhhhHhhcCCCCCCcChHHHHHHHHH
Confidence 66899999999999999999999999999988888887665555 7899999999999999765 67999999999999
Q ss_pred cccccCCCccccHHHHHHHHHHHHHHHHhhhcCCCCC--CCCccccccccccccceEEEEEEEecCCCCccceeeeeeee
Q 003960 552 ISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESK--VDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDL 629 (783)
Q Consensus 552 ~~~~f~~g~QQDA~EFL~~LLd~L~~e~~~~~~~~~~--~~~~~~~~siI~~lF~g~l~~~i~C~~C~~~s~~~e~f~~L 629 (783)
..+.+.+.+|||++||+..+++.++... . ..+... ........+++...|.|.+...+.|..|+..+..+++|++|
T Consensus 239 ~~~~~~g~~Qqda~eF~~~~~~~~~~~~-~-~~~k~~~~~~~~~~c~~iv~~~F~G~L~~~v~c~~c~~~S~~~dpf~di 316 (492)
T KOG1867|consen 239 HSPNLAGYEQQDAHEFLIALLDRLHREK-D-DCGKSLIASQSNKQCPCIVHTIFSGTLQSDVTCQTCGSKSTTYDPFMDI 316 (492)
T ss_pred hCcccccccccchHHHHHHhcccccccc-c-ccccccccccCCcccccccceeecceeccceeehhhcceeeeccCccce
Confidence 9999999999999999999999999865 1 111100 01111457889999999999999999999999999999999
Q ss_pred eecccccc---------CCHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEeeecCCceEEEEEEeeecC---cccc
Q 003960 630 TLEIYGWV---------ESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG---RYGK 697 (783)
Q Consensus 630 sL~I~~~~---------~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~~lP~iLiIqL~RF~~~---~~~K 697 (783)
+|+|+..- ..+.+++..+...+......++.|..|+.++.+.++..+..+|.+|.+|++||... ...|
T Consensus 317 sL~i~~~~~~~~~~~~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~kql~~~~lP~~l~~~lkRfe~~~~~~~~k 396 (492)
T KOG1867|consen 317 SLDIPDQFTSSSVRSPELTLLDCLDRFTRSEQLGKDSKYKCSSCKSKQESTKQLTIRKLPAVLCLHLKRFEHSATGAREK 396 (492)
T ss_pred eeecchhccCcccccchhhhhhhhhhhhhhhhcCcccccccCCcccccccccccccccCCceeeeeeccccccccccccc
Confidence 99998532 45899999999988887788899999999999999999999999999999999742 2349
Q ss_pred cceEEecCCccCCCccccCC-----CCCCCcEEEEEEEEEecCCCCCCCCeEEEEEEcCCCCEEEEcCCeeeeeCCCccC
Q 003960 698 INKCITFPEMLDMMPFMTGT-----GDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQVM 772 (783)
Q Consensus 698 i~~~V~fP~~LDL~~~~~~~-----~~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~~~~W~~fNDs~Vt~vs~e~v~ 772 (783)
+++.|.||..|+|.+|+..+ +..+..|+|.|||+|+|. .++|||+||.|. .+.||+|||+.|+.++.++|.
T Consensus 397 i~~~v~fp~~l~m~p~~~~~~~~~~~~~~~~Y~L~AVV~H~G~---~~SGHY~aY~r~-~~~~~~~dDs~v~~~s~~eVl 472 (492)
T KOG1867|consen 397 IDSYVSFPVLLNMKPYCSSEKLKSQDNPDHLYELRAVVVHHGT---VGSGHYVAYRRQ-SGGWFKCDDSTVTKVSEEEVL 472 (492)
T ss_pred cCcccccchhhcCCccccccccccCCCCCceEEEEEEEEeccC---CCCCceEEEEEe-CCCcEEEcCeEEEEeeHHHhh
Confidence 99999999999999998742 224688999999999996 459999999998 889999999999999999999
Q ss_pred CCCcEEEEEEC
Q 003960 773 SEGAYMLFYMR 783 (783)
Q Consensus 773 ~~~aYILfY~R 783 (783)
+..||+|||.+
T Consensus 473 ~~~aylLFY~~ 483 (492)
T KOG1867|consen 473 SSQAYLLFYTQ 483 (492)
T ss_pred hchhhheehhH
Confidence 99999999964
No 28
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.5e-36 Score=318.92 Aligned_cols=243 Identities=22% Similarity=0.330 Sum_probs=200.5
Q ss_pred ccccccccCcCCcccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCcccCCCCchHHHHHHHHHHHHHhCCCCCChHHH
Q 003960 466 LFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRI 545 (783)
Q Consensus 466 ~~~~~~~~~~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~~~~~~~~l~~qL~~L~~~L~s~~~~isP~~f 545 (783)
.|++..+++++++||.|.|.+||+||+||+|+++|+||+++. +....+....|++|+|..||..
T Consensus 4 ~fdf~~~n~t~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~~---~~~~~~~~~~~l~~el~~lfs~------------- 67 (268)
T cd02672 4 DFDFEFYNKTNYAGLENHITNSYCNSLLQLLYFIPPFRNFTA---IILVACPKESCLLCELGYLFST------------- 67 (268)
T ss_pred cccccccccccccccccCCccchHHHHHHHHHhcHHHHHHHH---hhcccCCcCccHHHHHHHHHHH-------------
Confidence 345666777899999999999999999999999999999832 3344456788999999999911
Q ss_pred HHHHHhcccccCCCccccHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCccceeee
Q 003960 546 LSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYEN 625 (783)
Q Consensus 546 l~~l~~~~~~f~~g~QQDA~EFL~~LLd~L~~e~~~~~~~~~~~~~~~~~~siI~~lF~g~l~~~i~C~~C~~~s~~~e~ 625 (783)
+ .+-|-.+|++.+..+... .+ ..|++++.+.++
T Consensus 68 ---~--------------iq~F~~fll~~i~~~~~~--------------------~~----------~~C~~~s~~~~~ 100 (268)
T cd02672 68 ---L--------------IQNFTRFLLETISQDQLG--------------------TP----------FSCGTSRNSVSL 100 (268)
T ss_pred ---H--------------HHHHHHHHHHHHHHHhcc--------------------cC----------CCCCceeecccc
Confidence 1 244778888888753211 11 679999999999
Q ss_pred eeeeeeccccc----cCCHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEeeecCCc----eEEEEEEeeecCc---
Q 003960 626 IMDLTLEIYGW----VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPN----ILTIVLKRFQEGR--- 694 (783)
Q Consensus 626 f~~LsL~I~~~----~~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~~lP~----iLiIqL~RF~~~~--- 694 (783)
++.|+|++|.. ..+|.+||+.++..|.+. +++|++|++++.+.++.+|.++|+ +|+||++||....
T Consensus 101 ~~~LsLpip~~~~~~~~sl~~cL~~~~~~E~~~---~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~ 177 (268)
T cd02672 101 LYTLSLPLGSTKTSKESTFLQLLKRSLDLEKVT---KAWCDTCCKYQPLEQTTSIRHLPDILLLVLVINLSVTNGEFDDI 177 (268)
T ss_pred ceeeeeecCccccccCCCHHHHHHHHhhhhhcc---cccccccCcccccEEEEEeecCCCcccceEEEEEeccChhhccc
Confidence 99999999853 469999999999988653 499999999999999999999999 9999999997422
Q ss_pred ------ccccceEEecCCccCCCccccCCCCCCCcEEEEEEEEEecCCCCCCCCeEEEEEEcC-----CCCEEEEcCCee
Q 003960 695 ------YGKINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM-----QGTWFRIDDTQV 763 (783)
Q Consensus 695 ------~~Ki~~~V~fP~~LDL~~~~~~~~~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~-----~~~W~~fNDs~V 763 (783)
..|++..|.||..+++..+...+......|+|+|||+|.|. +..+|||+||||.. .++||+|||..|
T Consensus 178 ~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~Y~L~gvV~hig~--~~~~GHyva~vk~~~~~~~~~~WylFND~~V 255 (268)
T cd02672 178 NVVLPSGKVMQNKVSPKAIDHDKLVKNRGQESIYKYELVGYVCEIND--SSRGQHNVVFVIKVNEESTHGRWYLFNDFLV 255 (268)
T ss_pred CcceeEEEecCCeecccccccchhhhccCCCCCceEEEEEEEEEecC--CCCCCcEEEEEEccCCCCCCCcEEEecCeEE
Confidence 25778899999888776665555556678999999999997 44699999999985 478999999999
Q ss_pred eeeCCCccCCCCcEEEEEE
Q 003960 764 HPVPMSQVMSEGAYMLFYM 782 (783)
Q Consensus 764 t~vs~e~v~~~~aYILfY~ 782 (783)
+++++ .||||||+
T Consensus 256 ~~vs~------~aYiLfY~ 268 (268)
T cd02672 256 TPVSE------LAYILLYQ 268 (268)
T ss_pred EEcCc------hheeeecC
Confidence 99977 79999995
No 29
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-37 Score=342.91 Aligned_cols=305 Identities=33% Similarity=0.513 Sum_probs=237.8
Q ss_pred cCCcccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCccc-----------------CCCCchHHHHHHHHHHHHHhCC
Q 003960 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC-----------------CGKDWCLMCELEQHVMMLRESA 537 (783)
Q Consensus 475 ~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~~-----------------~~~~~~l~~qL~~L~~~L~s~~ 537 (783)
..-+||.|+|||||+|||||.|..+|.+++.|.....+... ..+...+..+|..|..+.....
T Consensus 203 ~~VrGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~~~e~~e~~k 282 (877)
T KOG1873|consen 203 YIVRGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALANLLEMSETTK 282 (877)
T ss_pred ccccccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHhhhhhhhccC
Confidence 44589999999999999999999999999999765443211 0134467777878777777788
Q ss_pred CCCChHHHHHHHHhcccccCCCccccHHHHHHHHHHHHHHHHhhh--------cCCCC-CCC-------------Ccccc
Q 003960 538 GPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLER--------HGGES-KVD-------------PRLQE 595 (783)
Q Consensus 538 ~~isP~~fl~~l~~~~~~f~~g~QQDA~EFL~~LLd~L~~e~~~~--------~~~~~-~~~-------------~~~~~ 595 (783)
+.++|+.|+..+....++|.++.||||||+|+.|||.|..+-... .+++. .+. +....
T Consensus 283 sv~~Pr~lF~~~C~k~pqF~g~~QhDsHELLR~LLD~l~~EE~~~~kk~Il~~fG~~t~~l~scle~~q~sKvYe~f~~~ 362 (877)
T KOG1873|consen 283 SVITPRTLFGQFCSKAPQFRGYDQHDSHELLRCLLDSLRSEESRRRKKNILSNFGGETSSLVSCLECGQKSKVYEPFKDL 362 (877)
T ss_pred CccCHHHHHHHHHHhCCcccccccccHHHHHHHHHHhhhHHHHHHHHHhHHHhhCccccchhhhhhccchhhcccccccC
Confidence 899999999999999999999999999999999999997653221 11111 011 11112
Q ss_pred ccccccccceEEEEEEEecCCCCccceeeeeeeeeecccc----------------------------------------
Q 003960 596 TTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYG---------------------------------------- 635 (783)
Q Consensus 596 ~siI~~lF~g~l~~~i~C~~C~~~s~~~e~f~~LsL~I~~---------------------------------------- 635 (783)
..++..+|.+.+...+.|..|. ++...+.|.++++||-.
T Consensus 363 ~~~vp~~~~~~~~s~~~~~~~~-vss~~~s~~~~t~pv~~~~~~~qs~~~s~~~~~tsd~sd~spst~~~t~n~~~~e~~ 441 (877)
T KOG1873|consen 363 SLPVPLSFNGPLTSQIECQACD-VSSVHESFLSETLPVLPSQSLSQSSDSSQHLHLTSDSSDTSPSTEAPTKNLPSSELL 441 (877)
T ss_pred CcccccccCCCcccchhhhccc-eeccchhhcccccccccCccccccCCCcccceeccccccCCccccCcccCccccccc
Confidence 2344467777777777777776 55555566666665510
Q ss_pred --------------------------------------------------------------------------------
Q 003960 636 -------------------------------------------------------------------------------- 635 (783)
Q Consensus 636 -------------------------------------------------------------------------------- 635 (783)
T Consensus 442 ~~~t~dn~~~~k~qS~~~~~~S~~~~~~~k~~a~s~n~n~~~~g~~~~~a~~v~~~~~~~~p~gD~e~s~Ad~~lde~n~ 521 (877)
T KOG1873|consen 442 DSLTDDNDQVFKGQSDVAGTNSKEDQNKAKNQAKSQNLNEASQGKDNEKALQVNDRQLDILPLGDGELSKADMSLDEANM 521 (877)
T ss_pred ccccccCchhhccccccccCccccccchhhhhhhhhccccccccccchhhhhhchhhccccccCcccccccccccccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 003960 636 -------------------------------------------------------------------------------- 635 (783)
Q Consensus 636 -------------------------------------------------------------------------------- 635 (783)
T Consensus 522 ~~~sss~~~~~~~~~~~s~v~~~s~~ed~n~~~~~~~~~~~a~~Ss~~~d~~~~~~~v~~S~~s~sp~~se~~~vs~n~~ 601 (877)
T KOG1873|consen 522 DEFSSSLEKGIFRGRSTSEVSQASCNEDCNDPEPIQDGSGEASSSSSSVDREHNNHRVARSRFSRSPKKSEVKIVSGNDK 601 (877)
T ss_pred cccccccCCcccCCccHHHhhhhhhhcccCCcccccCCCCcccCCCcccccccccchhhhhhhcCCCcccceeeeccccc
Confidence
Q ss_pred --------------------------------------------------------------------------ccCCHH
Q 003960 636 --------------------------------------------------------------------------WVESLE 641 (783)
Q Consensus 636 --------------------------------------------------------------------------~~~sLe 641 (783)
...+++
T Consensus 602 ~~g~~g~~~~Sssf~~g~~~g~~~d~d~~~~e~~~~~~T~~~~~~g~~s~~kvs~~~f~a~~S~s~~~~~~~~D~p~Svq 681 (877)
T KOG1873|consen 602 TVGDQGETENSSSFNEGDLNGHASDNDEFLIEIPDDKLTRELPVFGPPSKAKVSEQGFDAFSSISDPEVLDSSDEPCSVQ 681 (877)
T ss_pred cccccceeeechhhhccCccccccchHHhhhcCcccCCCccccccCCCccceeccCCccccccccChhhccCCCCCccHH
Confidence 012899
Q ss_pred HHHhhcCCCccCCCCCccccCccCc---------------------------ceeeEEEEeeecCCceEEEEEEeeec--
Q 003960 642 DALTQFTSPEDLDGENMYKCARCAT---------------------------YVRARKQLSIHEAPNILTIVLKRFQE-- 692 (783)
Q Consensus 642 d~L~~~~~~E~l~g~n~y~C~~C~~---------------------------~~~a~k~~~i~~lP~iLiIqL~RF~~-- 692 (783)
.||.+|+..|.+.|+|+|.|++|.+ ...+.+++-|..+|++|+|||+||..
T Consensus 682 ~CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVltihlKrf~q~~ 761 (877)
T KOG1873|consen 682 RCLKNFTKVEILSGDNKWACENCTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLTIHLKRFFQDI 761 (877)
T ss_pred HHHHhhhhhhhcccccchhhhhhhccccccchhhccCCCCcccccccchhhhhhhhheeeecccCCceeeehHhhhhhhh
Confidence 9999999999999999999999965 11246778889999999999999963
Q ss_pred -CcccccceEEecCCccCCCccccCC-----CCCCCcEEEEEEEEEecCCCCCCCCeEEEEEEc----------------
Q 003960 693 -GRYGKINKCITFPEMLDMMPFMTGT-----GDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKD---------------- 750 (783)
Q Consensus 693 -~~~~Ki~~~V~fP~~LDL~~~~~~~-----~~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~---------------- 750 (783)
+...|.+..++|++.+||..|+... ......|+|.|+|.|.|+. ..||||+|+|.
T Consensus 762 ~~~~~k~~~h~~f~E~~dL~~~~~~rc~~l~~~~s~~Yrl~gvvehsgtm---~~ghyvayv~~~t~~~~~~~~~~~~~~ 838 (877)
T KOG1873|consen 762 RGRLSKLNKHVDFKEFEDLLDYMDFRCSHLDEPSSFVYRLAGVVEHSGTM---SYGHYVAYVRGGTFLDLSAPSNSKDFE 838 (877)
T ss_pred hchhhcccccchHHHHHHHHHHhhhhccccCCcchhhhhhccceeccccc---cCCcchhhhhccchhhccCccccccch
Confidence 3468999999999999999887621 1135689999999999964 49999999983
Q ss_pred -----CCCCEEEEcCCeeeeeCCCccCCCCcEEEEEEC
Q 003960 751 -----MQGTWFRIDDTQVHPVPMSQVMSEGAYMLFYMR 783 (783)
Q Consensus 751 -----~~~~W~~fNDs~Vt~vs~e~v~~~~aYILfY~R 783 (783)
+.++||.+.|+.|+++++++|++.+||||||+|
T Consensus 839 sd~~~~~~~Wy~iSDs~VrevS~d~vLkseAYlLFYER 876 (877)
T KOG1873|consen 839 SDAGIPSGRWYYISDSIVREVSLDEVLKSEAYLLFYER 876 (877)
T ss_pred hccCCCCcceEEecchheecccHHHHhhhhhhhhheec
Confidence 247999999999999999999999999999998
No 30
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-36 Score=334.13 Aligned_cols=267 Identities=29% Similarity=0.476 Sum_probs=222.0
Q ss_pred cCCcccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCcccCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHhccc
Q 003960 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISC 554 (783)
Q Consensus 475 ~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~~~~~~~~l~~qL~~L~~~L~s~~~~isP~~fl~~l~~~~~ 554 (783)
.+++||+|...+||+|+.+|+|+..|.|++.+... ....+...++.+.++.-
T Consensus 85 ~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts--------------------------~~~~~et~dlt~sfgw~-- 136 (1203)
T KOG4598|consen 85 HRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTS--------------------------ENDSLETKDLTQSFGWT-- 136 (1203)
T ss_pred cceEeehhhHHHHHHHHHhhhhccChhhhhhhhCC--------------------------CcccccchhhHhhcCCC--
Confidence 56899999999999999999999999999877521 11233444444433211
Q ss_pred ccCCCccccHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCccceeeeeeeeeeccc
Q 003960 555 QIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIY 634 (783)
Q Consensus 555 ~f~~g~QQDA~EFL~~LLd~L~~e~~~~~~~~~~~~~~~~~~siI~~lF~g~l~~~i~C~~C~~~s~~~e~f~~LsL~I~ 634 (783)
.-...+|+|.+|+.+.++|.|+-..+. .....+|++++.|.+...+.|..|+.++.+.+.|++|.|++.
T Consensus 137 s~ea~~qhdiqelcr~mfdalehk~k~-----------t~~~~li~~ly~g~m~d~v~cl~c~~e~~~~d~fld~pl~v~ 205 (1203)
T KOG4598|consen 137 SNEAYDQHDVQELCRLMFDALEHKWKG-----------TEHEKLIQDLYRGTMEDFVACLKCGRESVKTDYFLDLPLAVK 205 (1203)
T ss_pred cchhhhhhhHHHHHHHHHHHHHhhhcC-----------chHHHHHHHHhcchHHHHHHHHHcCccccccceeeccccccc
Confidence 112358999999999999999864432 223468999999999999999999999999999999999996
Q ss_pred cc-----cCCHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEeeecCCceEEEEEEeeecC----cccccceEEecC
Q 003960 635 GW-----VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG----RYGKINKCITFP 705 (783)
Q Consensus 635 ~~-----~~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~~lP~iLiIqL~RF~~~----~~~Ki~~~V~fP 705 (783)
.- -.+++++|..|..||.++|.|+|.|++|+++++|.|.+.|+.||-+|+|||+||+++ ...|+++.+.||
T Consensus 206 pfg~~~ay~sieeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~tfp 285 (1203)
T KOG4598|consen 206 PFGAIHAYKSVEEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFP 285 (1203)
T ss_pred CCcchhhhhhHHHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceeeccceeeEEeeecccccchheeeeeecccccCc
Confidence 31 258999999999999999999999999999999999999999999999999999754 237999999999
Q ss_pred CccCCCccccCC------------------------------------------------------------------CC
Q 003960 706 EMLDMMPFMTGT------------------------------------------------------------------GD 719 (783)
Q Consensus 706 ~~LDL~~~~~~~------------------------------------------------------------------~~ 719 (783)
+.|||..|+... ..
T Consensus 286 ~~l~ln~~in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~n~~~g~~~~~~~~~~~~~~s 365 (1203)
T KOG4598|consen 286 DVLDLNDYVNKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQSPNRYQGSENVCVGQPIDHAAVDDIVKTS 365 (1203)
T ss_pred ccccHHHhhhhccCCcchhHhhhcccccccccccccccCCCCcccCcccccCcccccCccccccCCcCchhhhhhHhhcC
Confidence 999998885411 01
Q ss_pred CCCcEEEEEEEEEecCCCCCCCCeEEEEEEcC-CCCEEEEcCCeeeeeCCCccCC-------------CCcEEEEEEC
Q 003960 720 TPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM-QGTWFRIDDTQVHPVPMSQVMS-------------EGAYMLFYMR 783 (783)
Q Consensus 720 ~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~-~~~W~~fNDs~Vt~vs~e~v~~-------------~~aYILfY~R 783 (783)
++..|+|++|.+|.|+ ..+|||+||||+. +++||.|||.+|+-++.+++.. .+||||+|+|
T Consensus 366 g~~~yelf~imihsg~---a~gghy~ayik~~d~~~w~~fnd~~v~~~t~~~i~~sfgg~~~~~~~s~tnaymlmyr~ 440 (1203)
T KOG4598|consen 366 GDNVYELFSVMVHSGN---AAGGHYFAYIKNLDQDRWYVFNDTRVDFATPLEIEKSFGGHPSGWNQSNTNAYMLMYRR 440 (1203)
T ss_pred CccHHHhhhhheecCC---CCCceeeeeecccCcCceEEecCccccccCHHHHHHhhCCCCCCccccCcchhhhhhhh
Confidence 5678999999999996 4599999999985 6899999999999998877753 4699999986
No 31
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-34 Score=356.65 Aligned_cols=347 Identities=27% Similarity=0.354 Sum_probs=275.2
Q ss_pred CCCCCcccccccccccCcccccccccchhhhhhhhhcCceeecchhhhhhc-cccccccCcCC-cccccCCCcccHHHHH
Q 003960 416 AQGSNVVSKMGIMKMMGLRKSTKLRQDSSELWHDQHRKLKMLFPYEEFLKL-FQYEVIDLLSP-RGLLNCGNSCYANAVL 493 (783)
Q Consensus 416 ~~~~~~L~~~Gi~k~~~l~~~~kt~~s~~el~~d~n~~~~~~~~~e~~~~~-~~~~~~~~~~~-~GL~NlGNTCYmNSVL 493 (783)
|-...--.-||.+.+....+..+.+.+.++... ..+......+..... ..+.....+++ +||.|+||||||||+|
T Consensus 110 h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~v~~~~~~~~~~d~k~~tg~~vGL~N~GaTCY~Nsll 186 (1093)
T KOG1863|consen 110 HVFTADERDWGFSCFSTSSDIRKPEDGYVRNGL---EKLEKRVRVEQPTSLMNPYDSKRLTGFPVGLKNLGATCYVNSLL 186 (1093)
T ss_pred hcccccccchhhccchhHhhccCcccccccccc---eeeeeeeeeecCCcccchhhhhhcCCCCccccCCCceeeehHHH
Confidence 334444556777667777777666655554321 111111122222111 11222222566 9999999999999999
Q ss_pred HHHhcCHHHHHHHHhcccCcccCCCCchHHHHHHHHHHHHHhCCC-CCChHHHHHHHHhcccccCCCccccHHHHHHHHH
Q 003960 494 QCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAG-PLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLV 572 (783)
Q Consensus 494 Q~L~~ip~fr~~ll~~~~~~~~~~~~~~l~~qL~~L~~~L~s~~~-~isP~~fl~~l~~~~~~f~~g~QQDA~EFL~~LL 572 (783)
|+||.++.||+.+...........+...++.+|+.||..|+.+.. ++.+..+...++... .....|||++||+..|+
T Consensus 187 Q~lf~~~~FR~~Vy~~~~~~~~~~~~~~v~~~lq~lF~~LQ~s~~k~Vdt~~~~~~~~~~~--~~~~~QqDvqEf~~~l~ 264 (1093)
T KOG1863|consen 187 QVLFLIPEFRRAVYSIPPFTGHEDPRRSIPLALQRLFYELQMSKRKYVDTSELTKSLGWDS--NDSFEQQDVQEFLTKLL 264 (1093)
T ss_pred HHHHccHHHHHHHhcCCCCCCcccccchHHHHHHHHHHHHhhcCCCCcCchhhhhhhhccc--ccHHhhhhHHHHHHHHH
Confidence 999999999999987664344455667799999999999998877 999999999886654 45579999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCccceeeeeeeeeeccccccCCHHHHHhhcCCCcc
Q 003960 573 ASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPED 652 (783)
Q Consensus 573 d~L~~e~~~~~~~~~~~~~~~~~~siI~~lF~g~l~~~i~C~~C~~~s~~~e~f~~LsL~I~~~~~sLed~L~~~~~~E~ 652 (783)
|.|+..+.... ....|.++|.|.+...+.|..|...+.+.+.|+++.|++.+ ..++.++|..|+..|.
T Consensus 265 d~LE~~~~~~~-----------~~~~l~~lf~g~~~~~i~c~~~~~~s~r~e~f~d~ql~~~g-~~nl~~sf~~y~~~E~ 332 (1093)
T KOG1863|consen 265 DWLEDSMIDAK-----------VENTLQDLFTGKMKSVIKCIDVDFESSRSESFLDLQLNGKG-VKNLEDSLHLYFEAEI 332 (1093)
T ss_pred HHHHhhccchh-----------hhhhhhhhhcCCcceEEEEEeeeeeccccccccCccccccc-hhhHHHHHHHhhhHHH
Confidence 99998653321 24568899999999999999999999999999999999997 6779999999999999
Q ss_pred CCCCCccccCccCcceeeEEEEeeecCCceEEEEEEeeecC----cccccceEEecCCccCCCccccC---CCCCC-CcE
Q 003960 653 LDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG----RYGKINKCITFPEMLDMMPFMTG---TGDTP-PLY 724 (783)
Q Consensus 653 l~g~n~y~C~~C~~~~~a~k~~~i~~lP~iLiIqL~RF~~~----~~~Ki~~~V~fP~~LDL~~~~~~---~~~~~-~~Y 724 (783)
++|+|+ .|..|...+.+.+...+..+|++|.|+|+||.+. ...|++..+.||..|+|.+|+.. ..... ..|
T Consensus 333 l~gdn~-~~~~~~~~~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~~fp~~i~~d~~~~~~~~~~~~~~~~y 411 (1093)
T KOG1863|consen 333 LLGDNK-YDAECHGLQDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDKFEFPLIIDMDRYLSRFKAEESERSAVY 411 (1093)
T ss_pred hcCCcc-ccccccchhhhhcceeeccCCchhhhhhhheeeeccCCceeehhhccCCccccccchhccccchhhhhcccee
Confidence 999998 8999999999999999999999999999999763 45899999999999999999773 11223 599
Q ss_pred EEEEEEEEecCCCCCCCCeEEEEEEcC-CCCEEEEcCCeeeeeCCCccCC----------C------CcEEEEEEC
Q 003960 725 MLYSVVVHLDTQNASFSGHYVSYIKDM-QGTWFRIDDTQVHPVPMSQVMS----------E------GAYMLFYMR 783 (783)
Q Consensus 725 ~L~gVV~H~G~~~s~~sGHYva~Vk~~-~~~W~~fNDs~Vt~vs~e~v~~----------~------~aYILfY~R 783 (783)
+|+||++|.|. .++|||++|++.. .++|++|||..|+.++..+++. . .||+|+|-|
T Consensus 412 ~l~~v~vh~g~---~~~ghy~~~i~~~~~~~w~kfdd~~v~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~lv~~~ 484 (1093)
T KOG1863|consen 412 SLHAVLVHSGD---AHSGHYVAYINPKLDGKWVKFDDLVVTVVSEKEALEQNYGTEEIELSSTADFKNAYMLVYIR 484 (1093)
T ss_pred ccchhhccccc---ccCccceeeecchhhccceeccCceeeeccHHHHHHhhCCCcchhhhcccccCCcceEEEEe
Confidence 99999999774 5699999999954 8999999999999998666542 1 279999975
No 32
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=100.00 E-value=6.3e-33 Score=299.60 Aligned_cols=277 Identities=25% Similarity=0.365 Sum_probs=234.5
Q ss_pred cccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCcccCCCCchHHHHHHHHHHHHH-hCC-CCCChHHHHHHHHhcccc
Q 003960 478 RGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLR-ESA-GPLSPGRILSHMRSISCQ 555 (783)
Q Consensus 478 ~GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~~~~~~~~l~~qL~~L~~~L~-s~~-~~isP~~fl~~l~~~~~~ 555 (783)
.||.|.+++||+||+||+|+++|++++.++... .+....||+|+|..||++|. .+. ..+.+..|++.++.....
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~----~c~~e~cL~cELgfLf~ml~~~~~g~~cq~sNflr~l~~~~~a 76 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL----ECPKEFCLLCELGFLFDMLDSKAKGINCQASNFLRALSWIPEA 76 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc----CCCccccHHHHHHHHHHHhhhhcCCCcChHHHHHHHHhcCHHH
Confidence 599999999999999999999999999998765 25678999999999999999 654 468899999999888766
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHhhhcCCC--CCCCCccccccccccccceEEEEEEEecCCCCccceeeeeeeeeecc
Q 003960 556 IGDGSQEDAHEFLRLLVASMQSICLERHGGE--SKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEI 633 (783)
Q Consensus 556 f~~g~QQDA~EFL~~LLd~L~~e~~~~~~~~--~~~~~~~~~~siI~~lF~g~l~~~i~C~~C~~~s~~~e~f~~LsL~I 633 (783)
...+.|+|+++|+++|++.|+.++....... ..........+.|.++|+.......+|..|+.++.+.+....+.|..
T Consensus 77 ~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~c~~c~~~~~~~~~~~~~~l~y 156 (295)
T PF13423_consen 77 AALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTSENSSSSPESSISQLFGTSFETTIRCTSCGHESVKESSTLVLDLPY 156 (295)
T ss_pred HhcchhHHHHHHHHHHHHHHhHHHHhcCcccccccccccCCCcchHHHHhCcceeeeecccccCCeEEeecceeeeeccC
Confidence 6778899999999999999999876543211 11122233456799999999999999999999998888888888877
Q ss_pred cc--ccCCHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEeeecCCceEEEEEEeeecCc--ccccceEEecCCccC
Q 003960 634 YG--WVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGR--YGKINKCITFPEMLD 709 (783)
Q Consensus 634 ~~--~~~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~~lP~iLiIqL~RF~~~~--~~Ki~~~V~fP~~LD 709 (783)
|. ...++.++|+.++..+.... .+|+.|++.+....+..|.++|+||.|.++++..+. ..|....+++|..++
T Consensus 157 p~~~~~~tf~~~Le~sl~~e~~~~---a~C~~C~~~~~~~~~r~i~~LPpVL~In~~~~~~~~~w~~~~~~~~~ip~~i~ 233 (295)
T PF13423_consen 157 PPSNSNVTFSQVLEHSLNREQQTR---AWCEKCNKYQPTEQRRTIRSLPPVLSINLNRYSEEEFWPKKNWLKIWIPPSIN 233 (295)
T ss_pred CCCCccchHHHHHHHHHhhccccc---ccccccccccceeeeeeccCCCcEEEEEccCCCcccccccccCCceecceeee
Confidence 75 35699999999999888876 899999999999999999999999999999986542 367888999999999
Q ss_pred CCccccCC-------CCCCCcEEEEEEEEEecCCCCCCCCeEEEEEEcC---CCCEEEEcCCee
Q 003960 710 MMPFMTGT-------GDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM---QGTWFRIDDTQV 763 (783)
Q Consensus 710 L~~~~~~~-------~~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~---~~~W~~fNDs~V 763 (783)
+..++..+ ..+..+|+|.|+|+|.|+ +..+||||+|||.. +.+||+|||..|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~--~~~~~HlVs~vrv~~~~~~~W~lFNDflV 295 (295)
T PF13423_consen 234 LPHFIADDSQSDLEGESGIFKYELRSMVCHIGD--SIESGHLVSLVRVGPSDDSQWYLFNDFLV 295 (295)
T ss_pred ccccccccccccccCCCCceEEEEEEEEEEecC--CCCCCceEEEEEcCCCCCCcEEEECcEeC
Confidence 98887543 335679999999999999 78899999999985 469999999765
No 33
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-33 Score=340.00 Aligned_cols=304 Identities=29% Similarity=0.486 Sum_probs=262.8
Q ss_pred cCCcccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCcc-----cCCCCchHHHHHHHHHHHHHhCCC-CCChHHHHHH
Q 003960 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSA-----CCGKDWCLMCELEQHVMMLRESAG-PLSPGRILSH 548 (783)
Q Consensus 475 ~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~-----~~~~~~~l~~qL~~L~~~L~s~~~-~isP~~fl~~ 548 (783)
.|.+||.|+|||||||+.+|+|.+.++++++++...+..+ .......+...+..+...+|.... .+.|..+...
T Consensus 244 ~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~~~~v~~~~~~~~ 323 (842)
T KOG1870|consen 244 RGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGNKSAVAPTSFRTS 323 (842)
T ss_pred ccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCCccccCchhhhhh
Confidence 7789999999999999999999999999999987554441 122345677788888888887665 6999999999
Q ss_pred HHhcccccCCCccccHHHHHHHHHHHHHHHHhhhcCCCC------------------CCCCccccccccccccceEEEEE
Q 003960 549 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGES------------------KVDPRLQETTFIQHTFGGRLWSK 610 (783)
Q Consensus 549 l~~~~~~f~~g~QQDA~EFL~~LLd~L~~e~~~~~~~~~------------------~~~~~~~~~siI~~lF~g~l~~~ 610 (783)
+....+.|.+..|+|.+||+-+++|-+|+.+........ .........++|.++|.+.+...
T Consensus 324 ~~~~a~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~~~~~~~~~s~i~d~~~~~~~S~ 403 (842)
T KOG1870|consen 324 LASFASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVWDYHLKRNRSVIVDLFDGTYKST 403 (842)
T ss_pred hhhccccccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHHHHHhhhhhccceeeeeecceeccc
Confidence 999999999999999999999999999997654332200 00111235678999999999999
Q ss_pred EEecCCCCccceeeeeeeeeecccc-------------------------------------------------------
Q 003960 611 VKCLRCSHESERYENIMDLTLEIYG------------------------------------------------------- 635 (783)
Q Consensus 611 i~C~~C~~~s~~~e~f~~LsL~I~~------------------------------------------------------- 635 (783)
+.|..|++++.++++|..|+|++|.
T Consensus 404 ~~c~~C~~~svt~d~f~~Lslp~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~i 483 (842)
T KOG1870|consen 404 LQCPTCGKVSVTFDPFGYLSLPLPGKEIQKLEVTVPHGDGFRKPGALGVSVAKNGRIRDLLEYLSRTVGLLSWELKPVEI 483 (842)
T ss_pred ccCccCCCceEEeeccccccccCCCCcccceeEEEecCCCCCChhheeeeccccchHHHHHHHHHHHhccchhhccccee
Confidence 9999999999999999999999862
Q ss_pred --------------------------------------------------------------------------------
Q 003960 636 -------------------------------------------------------------------------------- 635 (783)
Q Consensus 636 -------------------------------------------------------------------------------- 635 (783)
T Consensus 484 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~ 563 (842)
T KOG1870|consen 484 LFDCFNKIFAADELKLDSIYSDEELFDYELGVLKVQGSIYAIIVVRFRSRLPRSKGIRSHVSSKLFGLPLLVSVLSGAQS 563 (842)
T ss_pred ccchhhhhhccCccccccccCCcceEEeecccccccccceEEEEEeeccccccccCcccCCCccccCCcceeeccCCCcc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 003960 636 -------------------------------------------------------------------------------- 635 (783)
Q Consensus 636 -------------------------------------------------------------------------------- 635 (783)
T Consensus 564 t~~~l~~~~~~~~s~~~~~~~~~v~~~~~~~~~~~~~e~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (842)
T KOG1870|consen 564 TEEDLLSVICHRTSRYSREPPLNVGYGVDDQSLKEVSEQSAESSSSVSRDPSEDDNSDQDLSLECLSEESALRFFQSLES 643 (842)
T ss_pred cccchhhHHhhcccccCCcCccccccCCCcccccccccccccccccccCCChhHhccccccchhhccCcccccccccccc
Confidence
Q ss_pred --------------------------------------------------ccCCHHHHHhhcCCCccCCCCCccccCccC
Q 003960 636 --------------------------------------------------WVESLEDALTQFTSPEDLDGENMYKCARCA 665 (783)
Q Consensus 636 --------------------------------------------------~~~sLed~L~~~~~~E~l~g~n~y~C~~C~ 665 (783)
...+|++||+.|+.+|.+.-+++|.|+.|+
T Consensus 644 ~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cl~~F~~~E~L~~~~~w~C~~Ck 723 (842)
T KOG1870|consen 644 RNKSDSEFEPGSTSIAVDWSPSAKYKYSSSLVSQPPEVEPRGASRSKGSPAPNSLESCLELFSEPETLGKDDRWYCPQCK 723 (842)
T ss_pred cccccccccCCCceeecccChhhccccccccccccccccccccccccCCCCcccHHHHHHhhcchhcCCccccccChHHH
Confidence 001899999999999999999999999999
Q ss_pred cceeeEEEEeeecCCceEEEEEEeeecCc--ccccceEEecC-CccCCCccccCCCCCCCcEEEEEEEEEecCCCCCCCC
Q 003960 666 TYVRARKQLSIHEAPNILTIVLKRFQEGR--YGKINKCITFP-EMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSG 742 (783)
Q Consensus 666 ~~~~a~k~~~i~~lP~iLiIqL~RF~~~~--~~Ki~~~V~fP-~~LDL~~~~~~~~~~~~~Y~L~gVV~H~G~~~s~~sG 742 (783)
....|.|++.++++|+||||||+||++.+ ..|+...++|| ..||+++|+...+. ..|+|+||++|+|... +|
T Consensus 724 e~~~A~Kk~~lwrlPeiLiihLKrF~~~r~~~~k~~~~v~fPi~~ld~s~~~~~~~~--~~Y~l~av~nHyG~l~---~G 798 (842)
T KOG1870|consen 724 ELRQATKKLDLWRLPEILIIHLKRFQYSRESSSKVKTKVEFPLGSLDLSEFVVNKEQ--VLYDLYAVGNHYGQLS---GG 798 (842)
T ss_pred HHHHHhhhhhhhhCCceEEEEeecceeechhhhhhCccccCCCcCCCcchhhccCcc--ceeeeeeeecccCCcC---Cc
Confidence 99999999999999999999999998654 37999999999 58999999886544 8999999999999644 99
Q ss_pred eEEEEEEc-CCCCEEEEcCCeeeeeCCCccCCCCcEEEEEEC
Q 003960 743 HYVSYIKD-MQGTWFRIDDTQVHPVPMSQVMSEGAYMLFYMR 783 (783)
Q Consensus 743 HYva~Vk~-~~~~W~~fNDs~Vt~vs~e~v~~~~aYILfY~R 783 (783)
||+||.|. .+++||.|||+.|.+++++++.++.||+|||+|
T Consensus 799 HYta~~k~~~~~~w~~fdDs~v~~~~~~~i~t~~aY~Lfy~r 840 (842)
T KOG1870|consen 799 HYTAYAKNVGDGKWYLFDDSSVSEVDEDEIDTEAAYVLFYRR 840 (842)
T ss_pred chhhhhhcCCCCceEEeccccCCCCChhhcccccceEEEEEe
Confidence 99999998 489999999999999999999999999999997
No 34
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=9.8e-31 Score=272.49 Aligned_cols=195 Identities=26% Similarity=0.354 Sum_probs=152.1
Q ss_pred ccccCCC-cccHHHHHHHHhcCHHHHHHHHhcccCcccCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHhcccccC
Q 003960 479 GLLNCGN-SCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIG 557 (783)
Q Consensus 479 GL~NlGN-TCYmNSVLQ~L~~ip~fr~~ll~~~~~~~~~~~~~~l~~qL~~L~~~L~s~~~~isP~~fl~~l~~~~~~f~ 557 (783)
|+.|.+| +|||-|+|-+||+
T Consensus 1 g~~~~~~~~cy~d~~~~~~f~----------------------------------------------------------- 21 (241)
T cd02670 1 GAQNHCNVSCYLDALLFAMFA----------------------------------------------------------- 21 (241)
T ss_pred CCccccCceeehHHHHHHHHH-----------------------------------------------------------
Confidence 8899999 9999999999996
Q ss_pred CCccccHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccce-EEEEEEEecCCCCccceeeeeeeeeecccc-
Q 003960 558 DGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGG-RLWSKVKCLRCSHESERYENIMDLTLEIYG- 635 (783)
Q Consensus 558 ~g~QQDA~EFL~~LLd~L~~e~~~~~~~~~~~~~~~~~~siI~~lF~g-~l~~~i~C~~C~~~s~~~e~f~~LsL~I~~- 635 (783)
+|||+.|||.+|++.|+.-+++ +.-++|.+ +...... +...+.++.|.+|...
T Consensus 22 --~q~D~~e~~~~l~~~~~~~~~~----------------~~~~~~~~g~~~~~~~-------~~~~e~~l~l~ip~~~~ 76 (241)
T cd02670 22 --EQQDPEEFFNFITDKLLMPLLE----------------PKVDIIHGGKKDQDDD-------KLVNERLLQIPVPDDDD 76 (241)
T ss_pred --HhcCHHHHHHHHHHHHhhhhhh----------------HHHHHHhcCccccccc-------cccccceEEeecccCCC
Confidence 7999999999999998764332 12234433 2211110 2334566666666543
Q ss_pred -ccCCHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEeeecCCceEEEEEEeeecCc--ccccceEEecCCccCCCc
Q 003960 636 -WVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGR--YGKINKCITFPEMLDMMP 712 (783)
Q Consensus 636 -~~~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~~lP~iLiIqL~RF~~~~--~~Ki~~~V~fP~~LDL~~ 712 (783)
...+|++||+.|+..|. |.++|++|+|||+||.... ..|++..|.||..|||.+
T Consensus 77 ~~~~tLedcLe~~~~~e~-----------------------i~~lP~vLiIhLKRF~~~~~~~~Kl~~~I~fP~~Ldl~~ 133 (241)
T cd02670 77 GGGITLEQCLEQYFNNSV-----------------------FAKAPSCLIICLKRYGKTEGKAQKMFKKILIPDEIDIPD 133 (241)
T ss_pred CCcCCHHHHHHHHhchhh-----------------------hhhCCCeEEEEEEccccCCCcceeCCcEECCCCcCCchh
Confidence 35799999999998764 8899999999999998643 579999999999999999
Q ss_pred cccCCC----------------------CCCCcEEEEEEEEEecCCCCCCCCeEEEEEEcCC------------CCEEEE
Q 003960 713 FMTGTG----------------------DTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQ------------GTWFRI 758 (783)
Q Consensus 713 ~~~~~~----------------------~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~~------------~~W~~f 758 (783)
|+.... .....|+|+|||+|.|. +.++|||+||||... +.|++|
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~--s~~sGHYva~vr~~~~~~~~~~~~~~~~~W~~F 211 (241)
T cd02670 134 FVADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGT--SLETGHYVAFVRYGSYSLTETDNEAYNAQWVFF 211 (241)
T ss_pred hcccccccccccccccccccccccccCCCCCeEEEEEEEEEeCCC--CCCCcCeEEEEECCcccccccccCCCCCeEEEe
Confidence 986431 23468999999999998 677999999999863 799999
Q ss_pred cCCeeeeeCCC------ccCCCCcEEEEEE
Q 003960 759 DDTQVHPVPMS------QVMSEGAYMLFYM 782 (783)
Q Consensus 759 NDs~Vt~vs~e------~v~~~~aYILfY~ 782 (783)
||..|+.+... .+..+.||||||+
T Consensus 212 DD~~v~~~~~~~~~~~~~~~~~~aYmLFYq 241 (241)
T cd02670 212 DDMADRDGVSNGFNIPAARLLEDPYMLFYQ 241 (241)
T ss_pred cCcccccccccccccchhcccCCceEEEeC
Confidence 99988776432 4567889999996
No 35
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.6e-30 Score=298.89 Aligned_cols=306 Identities=29% Similarity=0.463 Sum_probs=243.2
Q ss_pred cCCcccccCCCcccHH--HHHHHHhcCHHHHHHHHhcccCccc-CCCCchHHHHHHHHHHHHHh---CCCCCChHHHHHH
Q 003960 475 LSPRGLLNCGNSCYAN--AVLQCLTCTKPLVIYLLRRSHSSAC-CGKDWCLMCELEQHVMMLRE---SAGPLSPGRILSH 548 (783)
Q Consensus 475 ~~~~GL~NlGNTCYmN--SVLQ~L~~ip~fr~~ll~~~~~~~~-~~~~~~l~~qL~~L~~~L~s---~~~~isP~~fl~~ 548 (783)
...-|..|.+++|+.| +|.|.+..+..++...+........ ......++..+..++..... ....+.|..|...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~~~~~~ 309 (587)
T KOG1864|consen 230 ERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSLKRSYIIKEELLTCLLDLFSSISSRKKLVGRISPTRFISD 309 (587)
T ss_pred ccccCccccCccccccchhhHHHHHhhhhhcccccchhhcccchhhhhHHHHHHhhhhccchhhhcccccccCcchhhhh
Confidence 3456999999999999 9999999998888544322111110 01122333444444433322 3356999999999
Q ss_pred HHhcccccCCCccccHHHHHHHHHHHHHHHHhhhcCCCCC-CC--------Cc------------cccccccccccceEE
Q 003960 549 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESK-VD--------PR------------LQETTFIQHTFGGRL 607 (783)
Q Consensus 549 l~~~~~~f~~g~QQDA~EFL~~LLd~L~~e~~~~~~~~~~-~~--------~~------------~~~~siI~~lF~g~l 607 (783)
+++....|..+.||||+||+.++++.+++.......+... .. .. .....++.++|.|.+
T Consensus 310 ~~~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~v~~lf~g~l 389 (587)
T KOG1864|consen 310 LIKENELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNKGHHKSLRENWVSKLFQGIL 389 (587)
T ss_pred hhhcCCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccccccccccccccchhHHHHhhcCee
Confidence 9999999999999999999999999998865433211110 00 00 113468999999999
Q ss_pred EEEEEecCCCCccceeeeeeeeeecccc-ccCCHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEeeecCCceEEEE
Q 003960 608 WSKVKCLRCSHESERYENIMDLTLEIYG-WVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIV 686 (783)
Q Consensus 608 ~~~i~C~~C~~~s~~~e~f~~LsL~I~~-~~~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~~lP~iLiIq 686 (783)
..+.+|..|...+.+.+.|.+++++++. ...++..+|+.|..+|.+.|+++|.|++|...+.|.+.+.++.+|.+|+||
T Consensus 390 ~~et~Clsc~t~T~~de~f~D~~~~v~~de~~si~~~l~~~~~~e~l~g~nky~c~~c~s~qeae~~l~~k~lp~~L~l~ 469 (587)
T KOG1864|consen 390 TNETRCLSCETITSRDEGFLDLSVAVEIDENTSITNLLKSFSSTETLSGENKYSCENCCSLQEAERRLKIKKLPYVLTLH 469 (587)
T ss_pred eeeeeeccccccccccccccccceeccccccccHHHHHHHhcchhhccCCCcccccccCchhhHHHhccccCCcceeeee
Confidence 9999999999999999999999999985 468999999999999999999999999999999999999999999999999
Q ss_pred EEeeecC----cccccceEEecCCccCCCccccCCCCCCCcEEEEEEEEEecCCCCCCCCeEEEEEEcCCCCEEEEcCCe
Q 003960 687 LKRFQEG----RYGKINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQ 762 (783)
Q Consensus 687 L~RF~~~----~~~Ki~~~V~fP~~LDL~~~~~~~~~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~~~~W~~fNDs~ 762 (783)
|+||.++ ...|+...|.+|..|.+.....+......+|.|+|||||.|. +++.|||+||+|...-.|++|||+.
T Consensus 470 Lkrfk~~~~~~~~~kl~~~v~~plel~l~~~~~~~~~~~~~Y~L~avVvH~G~--~p~~GHYia~~r~~~~nWl~fdD~~ 547 (587)
T KOG1864|consen 470 LKRFKYSEQQNRYTKLLYRVVFPLELRLKDTLKDDNNPDRKYDLVAVVVHLGS--TPNRGHYVAYVKSLDFNWLLFDDDN 547 (587)
T ss_pred hhccccccccccccccccccccccceeeccccccccCccceeeEEEEEEeccC--CCCCcceEEEEeeCCCCceeccccc
Confidence 9999865 237899999999999886555544433579999999999999 8999999999998444499999999
Q ss_pred eeeeCCCccCC---CCcEEEEEE
Q 003960 763 VHPVPMSQVMS---EGAYMLFYM 782 (783)
Q Consensus 763 Vt~vs~e~v~~---~~aYILfY~ 782 (783)
|..++.+.|.. ..+|+++|.
T Consensus 548 V~~~s~~~v~~~~~~s~~~~~~~ 570 (587)
T KOG1864|consen 548 VEPISEEPVSEFTGSSGDTLFYY 570 (587)
T ss_pred ccccCcchhhhccCCCccceeee
Confidence 99999888764 457777774
No 36
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.8e-28 Score=263.70 Aligned_cols=293 Identities=25% Similarity=0.260 Sum_probs=228.3
Q ss_pred cCCcccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCcccCC---CCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHh
Q 003960 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCG---KDWCLMCELEQHVMMLRESAGPLSPGRILSHMRS 551 (783)
Q Consensus 475 ~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~~~~---~~~~l~~qL~~L~~~L~s~~~~isP~~fl~~l~~ 551 (783)
..++||.|+|||||||+.+|||..+|+++..+........... ...-+..+++.+|+.+.+. ..+.|..++..+.+
T Consensus 103 ~lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~a~~i~~~mR~~f~~~~~~-~~v~pi~llqtl~~ 181 (473)
T KOG1872|consen 103 PLPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTWERRRRISIETRTCFRPLCEK-GAVAPINLLQTLSS 181 (473)
T ss_pred cCCccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCchhhhhhhHHHHHHHHHHhhhcc-CCcchHHHHHHHHH
Confidence 5578999999999999999999999999887754332222111 1345788899999999988 99999999999988
Q ss_pred cccccCC------CccccHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCccce--e
Q 003960 552 ISCQIGD------GSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESER--Y 623 (783)
Q Consensus 552 ~~~~f~~------g~QQDA~EFL~~LLd~L~~e~~~~~~~~~~~~~~~~~~siI~~lF~g~l~~~i~C~~C~~~s~~--~ 623 (783)
-.|.|.. ..||||.|++..++-.++....... ... .....+..+|++.+..+..|..-...... .
T Consensus 182 ~~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~----~~~---~~~~~~d~~f~~~~~~t~~~~e~e~~~~~~~~ 254 (473)
T KOG1872|consen 182 QYPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVAT----EAP---CLEAEAAAGFGAEFSTTMSCSEGEDEGGGAGR 254 (473)
T ss_pred HhHHHHHHhhhhhHHHHHHhHhHHHhhhheeccccccc----ccc---chhHHHHHhhccccccceeeccCccccccccc
Confidence 8888865 6899999999999998876432111 000 34457889999999999999887666433 7
Q ss_pred eeeeeeeeccccccCCHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEeeecCCceEEEEEEeeecCc----ccccc
Q 003960 624 ENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGR----YGKIN 699 (783)
Q Consensus 624 e~f~~LsL~I~~~~~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~~lP~iLiIqL~RF~~~~----~~Ki~ 699 (783)
|.|..|...|......+...|..-+..+.. -..+.-|..-...|.+.|.++|.||+|++.||.+.. ..|+-
T Consensus 255 E~~~~L~c~i~~~~~~~k~Gl~~~~~e~~~-----K~s~~lgr~a~y~k~~~isrlP~ylTvq~vrf~~k~k~~~~akil 329 (473)
T KOG1872|consen 255 ELVDQLKCIINKTVHDMRFGLKSGLSEEIQ-----KISSILGRPAAYQKVMYISRLPEYLTVQEVRFFSKAKIMVVAKIL 329 (473)
T ss_pred ccccccceEEeeeechhhhhhhhhhhhhhh-----ccCcccCCChHHHHHhHhhcCcccceEEEEEEEeccccchHHHHH
Confidence 888889998888777777777766643332 122333444445577789999999999999998643 35788
Q ss_pred eEEecCCccCCCccccCC-------------------------------------------------CCC-CCcEEEEEE
Q 003960 700 KCITFPEMLDMMPFMTGT-------------------------------------------------GDT-PPLYMLYSV 729 (783)
Q Consensus 700 ~~V~fP~~LDL~~~~~~~-------------------------------------------------~~~-~~~Y~L~gV 729 (783)
+.|.||..||...++..+ ... ...|.|.||
T Consensus 330 ~~V~fP~~ld~~d~ct~el~~k~~~~r~k~r~~edkk~~~~~~~k~~~~~~~~~~~~~e~~~~~~~~~s~~~g~y~l~~v 409 (473)
T KOG1872|consen 330 NAVNFPKDLDQQDLCTPELKKKLLCRRKKHRKVEDKKKEEDVMPKVKGAQERLKEVPLEGMYNKSGGKSRNSGLYDLQLV 409 (473)
T ss_pred HhccChhhhhHHHhhCHHhhcCccchHHHHHHHHhcCCchhhcccccCcCcccccccccchhccccccccccceeeeeEe
Confidence 899999999987766521 002 567999999
Q ss_pred EEEecCCCCCCCCeEEEEEEcCCCCEEEEcCCeeeeeCCCccCC-------CCcEEEEEE
Q 003960 730 VVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQVMS-------EGAYMLFYM 782 (783)
Q Consensus 730 V~H~G~~~s~~sGHYva~Vk~~~~~W~~fNDs~Vt~vs~e~v~~-------~~aYILfY~ 782 (783)
|.|.|. +..+|||++++|..++.|++|||..|+.+..+.+.. ..||||+|+
T Consensus 410 ithkgr--ss~sghy~aw~r~s~~~w~~fdd~~vs~v~~e~i~~lsgggd~~~ayvllyk 467 (473)
T KOG1872|consen 410 ITHKGR--SSKSGHYVAWNRVSEDKWGHFDDDMVSFVLGETILSLSGGGDWHSAYVLLYK 467 (473)
T ss_pred eecccc--ccCCCcceEEEeccCCceeeccccccccccccceeeecCCCccchhhheeec
Confidence 999999 889999999999988999999999999998888774 469999996
No 37
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=9.5e-26 Score=239.26 Aligned_cols=302 Identities=26% Similarity=0.354 Sum_probs=219.8
Q ss_pred cCCcccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCcc-cCCCCchHHHHHHHHHHHHHhC-----------------
Q 003960 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSA-CCGKDWCLMCELEQHVMMLRES----------------- 536 (783)
Q Consensus 475 ~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~-~~~~~~~l~~qL~~L~~~L~s~----------------- 536 (783)
..|+|+.|-||-|||||+||+|+.|++|.+.+-....... .......++.++..+.....+.
T Consensus 26 i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~~~~~~~~~~stp~lda~~~~~~df~n~~~~k~~r~N~~~~~~~~ 105 (420)
T KOG1871|consen 26 IDPRGSINKCNICFMNSILQALLYCSPFYNLLELIKRADGTVKEGSTPLLDASRPASSDFNNDSDAKLPRKNSLRVPEHV 105 (420)
T ss_pred cCCccccccceeEeeHHHHHHHHhCccHHHHHHhhhhhcCceecccchhHHHHHHHHhhccccchhhhhhhccCCccccc
Confidence 5589999999999999999999999999887743221111 1112234444544444333210
Q ss_pred ------------CCCCChHHHHHHHHhcc--cccCCCccccHHHHHHHHHHHHHHHHhhhcCC------C----------
Q 003960 537 ------------AGPLSPGRILSHMRSIS--CQIGDGSQEDAHEFLRLLVASMQSICLERHGG------E---------- 586 (783)
Q Consensus 537 ------------~~~isP~~fl~~l~~~~--~~f~~g~QQDA~EFL~~LLd~L~~e~~~~~~~------~---------- 586 (783)
...+-|..+...+.... ....+|+|.||.|||.++||.||+++.+.... +
T Consensus 106 ~~~ses~~~d~~~dav~~d~~~~~l~t~~~~e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~~i~~~ 185 (420)
T KOG1871|consen 106 VEKSESNKSDLQGDAVKPDPIYLDLLTMSRFESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRGLINNG 185 (420)
T ss_pred cchhhhhhhcccCccccCCchhhhcccCCchhhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCccccccccccccc
Confidence 11233333333332221 23456899999999999999999987542110 0
Q ss_pred ------CCCCC----------------------ccccccccccccceEEEEEEEecCCCCccceeeeeeeeeecccc-cc
Q 003960 587 ------SKVDP----------------------RLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYG-WV 637 (783)
Q Consensus 587 ------~~~~~----------------------~~~~~siI~~lF~g~l~~~i~C~~C~~~s~~~e~f~~LsL~I~~-~~ 637 (783)
....+ ..-..++|.++|+|+++..+.-.. .+++...+||..|.|+|.. ..
T Consensus 186 n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~-nkeS~tlqPF~tlqldiq~~~i 264 (420)
T KOG1871|consen 186 NLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPS-NKESATLQPFFTLQLDIQSEKI 264 (420)
T ss_pred ccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceeccc-cccccccCccceeeeeeecccc
Confidence 00000 001347799999999998877543 5667899999999999964 35
Q ss_pred CCHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEeeecCCceEEEEEEeeec---CcccccceEEecCCccCCCccc
Q 003960 638 ESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQE---GRYGKINKCITFPEMLDMMPFM 714 (783)
Q Consensus 638 ~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~~lP~iLiIqL~RF~~---~~~~Ki~~~V~fP~~LDL~~~~ 714 (783)
.+.+++++.+...|.+.+ |.-. .+....+.+++.+.++|.+|++|++||.+ +...|+.+.|++|-.|.+..-+
T Consensus 265 ~sv~~ales~~~re~lp~---~st~-s~~eV~~s~q~~leklp~vlilhlkrF~ye~tgg~~k~~K~i~~~~~l~i~~~~ 340 (420)
T KOG1871|consen 265 HSVQDALESLVARESLPG---YSTK-SGQEVEASSQTTLEKLPPVLILHLKRFVYEKTGGARKLGKKIEYPWTLKISKNC 340 (420)
T ss_pred CCHHHHhhccChhhcccc---eecC-CCCeechhhhhhHhhcchhhhhhhhHHHHHhccchhhhchhhhccceeeechhh
Confidence 799999999999999986 4444 77888899999999999999999999974 4568999999999777775433
Q ss_pred cC------CCCCCCcEEEEEEEEEecCCCCCCCCeEEEEEEcC-CCCEEEEcCCeeeeeCCCccCC----CCcEEEEEEC
Q 003960 715 TG------TGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM-QGTWFRIDDTQVHPVPMSQVMS----EGAYMLFYMR 783 (783)
Q Consensus 715 ~~------~~~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~-~~~W~~fNDs~Vt~vs~e~v~~----~~aYILfY~R 783 (783)
.. ...-...|+|.+||.|.|. +...|||..-+.+. -+.|+.+||..|..+..++|.+ ..+|+|.|+|
T Consensus 341 ~s~gvk~~~~~~~~~yks~~vvyhtgt--satvghYl~dv~~s~~~gw~rIDD~~i~~v~q~dv~~~t~~r~~yllyY~~ 418 (420)
T KOG1871|consen 341 FSQGLKIRILIATRPYKSLAVVYHTGT--SATVGHYLEDVSRSVPSGWQRIDDALILFVAQEDVEKVTGSRTPYLLYYIE 418 (420)
T ss_pred hccccchhhhccccccceEEEEEeccc--ccccCceEEeeeecccCceeEeccceeeeccHhhhccccCccchheeEeee
Confidence 21 1223567999999999999 88999999999874 5689999999999999888875 5699999986
No 38
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.91 E-value=2.6e-24 Score=227.26 Aligned_cols=283 Identities=22% Similarity=0.302 Sum_probs=220.4
Q ss_pred cCcCCcccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCcccCCCCchHHHHHHHHHHHHHhCC---CCCChHHHHHHH
Q 003960 473 DLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESA---GPLSPGRILSHM 549 (783)
Q Consensus 473 ~~~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~~~~~~~~l~~qL~~L~~~L~s~~---~~isP~~fl~~l 549 (783)
.++|.+||.|+-++-|+|++||+|.+.+++|+|++...- ..+....+...|..+++.||+.. +.++|.++++++
T Consensus 130 YLpG~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~n---~~d~~~~lv~rl~~l~rklw~~r~fk~hvSphe~lqaV 206 (442)
T KOG2026|consen 130 YLPGFVGLNNIKANDYANAVLQALSHVVPLRNYFLLEEN---YFDNLTELVQRLGELIRKLWNPRNFKGHVSPHEFLQAV 206 (442)
T ss_pred ceeeeeccchhhhHHHHHHHHHHHhccchhhhhhccccc---ccchhHHHHHHHHHHHHHhcChhhhcccCCHHHHHHHH
Confidence 448899999999999999999999999999999976422 12334578999999999999865 579999999988
Q ss_pred Hhc-ccccCCCccccHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEEEEEecC----CCCccceee
Q 003960 550 RSI-SCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLR----CSHESERYE 624 (783)
Q Consensus 550 ~~~-~~~f~~g~QQDA~EFL~~LLd~L~~e~~~~~~~~~~~~~~~~~~siI~~lF~g~l~~~i~C~~----C~~~s~~~e 624 (783)
... ...|..++|.|+.|||.|||+.||..+.. . ...+++|++.|+|.++...+-.. -.......-
T Consensus 207 ~~~s~k~f~i~~q~DpveFlswllntlhs~l~~----~------k~~~SIi~~~fqG~~ri~k~~~~~~~~~~~~~i~~~ 276 (442)
T KOG2026|consen 207 MKLSKKRFRIGQQSDPVEFLSWLLNTLHSDLRG----S------KKASSIIHKSFQGEVRIVKEKQGEASENENKEISVM 276 (442)
T ss_pred HHHhhhheecCCCCCHHHHHHHHHHHHHHHhCC----C------CCchhHhhHhhcceEEeeeeccccccccccceEEEE
Confidence 555 46899999999999999999999986422 1 13458999999999876544322 112234566
Q ss_pred eeeeeeecccccc-------------CCHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEeeecCCceEEEEEEeee
Q 003960 625 NIMDLTLEIYGWV-------------ESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQ 691 (783)
Q Consensus 625 ~f~~LsL~I~~~~-------------~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~~lP~iLiIqL~RF~ 691 (783)
+|+.|+|++|... ..|.++|+.|.....-+ +. +...+ ++..+.++|+|||+|++||.
T Consensus 277 ~Fl~LtLDLP~~plfkD~~e~niiPQV~l~~lL~Kf~g~t~~e----~~-----~~~~~-~rf~l~k~P~ylifh~~rF~ 346 (442)
T KOG2026|consen 277 PFLYLTLDLPPPPLFKDVMEKNIIPQVALFDLLKKFDGETVTE----VV-----TPKLA-MRFRLTKLPRYLIFHMKRFK 346 (442)
T ss_pred eeEEEEecCCCCCcccchhhhcccccchHHHHHHHhcCceeee----ec-----chhhh-hheeeecCCceEEEEeeecc
Confidence 9999999998532 37888888887643332 11 11123 77889999999999999998
Q ss_pred cCcc--cccceEEecC-CccCCCccccCC---CCCCCcEEEEEEEEEecCCCCCCCCeEEEEEEcC-CCCEEEEcCCeee
Q 003960 692 EGRY--GKINKCITFP-EMLDMMPFMTGT---GDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM-QGTWFRIDDTQVH 764 (783)
Q Consensus 692 ~~~~--~Ki~~~V~fP-~~LDL~~~~~~~---~~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~-~~~W~~fNDs~Vt 764 (783)
.+++ .|+.+.++|| ..+|+.++.... ...-..|.|+|.++|... .|||..+|++. .++||.++|-.|+
T Consensus 347 kNn~f~ekNpTl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~i~~~e-----~~~~riqi~~~~s~kW~eiqdl~v~ 421 (442)
T KOG2026|consen 347 KNNFFKEKNPTLVEFPYSEVDILHVLDRLKAVNHKVTQYSLVANAIHEDE-----DGNFRIQIYDNSSEKWYEIQDLHVT 421 (442)
T ss_pred ccCcccccCCceeeccCCccchhhhhhhcccccCccccccchhhhhcCcc-----cCceEEEEEeCCCcceEEecccchh
Confidence 7665 7999999999 677776555422 112267999999999743 69999999975 7899999999999
Q ss_pred eeCCCccCCCCcEEEEEEC
Q 003960 765 PVPMSQVMSEGAYMLFYMR 783 (783)
Q Consensus 765 ~vs~e~v~~~~aYILfY~R 783 (783)
+..++.+.-..+||.+|+|
T Consensus 422 e~~~qmi~L~Es~iQiwe~ 440 (442)
T KOG2026|consen 422 ERLPQMIFLKESFIQIWEK 440 (442)
T ss_pred hhhhHHHHHHHHHHHHHhc
Confidence 9988888778899988875
No 39
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.80 E-value=1.9e-19 Score=206.26 Aligned_cols=306 Identities=20% Similarity=0.303 Sum_probs=214.2
Q ss_pred ccccccccCcCCcccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCcccCCCCchHHHHHHHHHHHHHhCC-CCCChHH
Q 003960 466 LFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESA-GPLSPGR 544 (783)
Q Consensus 466 ~~~~~~~~~~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~~~~~~~~l~~qL~~L~~~L~s~~-~~isP~~ 544 (783)
.|++..++.+.|.||.-.+-+-|.|++||+|+.+|++|.+++.+ .+....|++|+|..||.+|..+. .++....
T Consensus 488 dFDF~~~NqT~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H-----~C~~e~CL~CELGFLF~Ml~~S~G~~Cqa~N 562 (1118)
T KOG1275|consen 488 DFDFQDYNQTTYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRH-----ICTKEFCLLCELGFLFTMLDSSTGDPCQANN 562 (1118)
T ss_pred cCCCcccccceeeccCCCCchHHHHHHHHHHHhccHHHHHHHcC-----ccchhHHHHHHHHHHHHHHhhhcCCccchhH
Confidence 34455666788999999999999999999999999999999875 45677899999999999998654 4788899
Q ss_pred HHHHHHhcccccCCC----------------ccccHHHHHHHHHHHHHHH--HhhhcCCCCCC--CCccccccccccccc
Q 003960 545 ILSHMRSISCQIGDG----------------SQEDAHEFLRLLVASMQSI--CLERHGGESKV--DPRLQETTFIQHTFG 604 (783)
Q Consensus 545 fl~~l~~~~~~f~~g----------------~QQDA~EFL~~LLd~L~~e--~~~~~~~~~~~--~~~~~~~siI~~lF~ 604 (783)
|+.+++.....-..| --||+..|..........- +......+... .........+.+.|+
T Consensus 563 Flraf~t~~~a~~LG~vl~d~~~~~~~~~~~liq~~~~~~~set~~~~d~~~~~~~~~s~~~~~~~~~vn~~~~l~q~F~ 642 (1118)
T KOG1275|consen 563 FLRAFRTNPEASALGLVLSDTQISGTVNDDVLIQDAEGFISSETSRHLDCQDCRGLQQSESVDGESFKVNYAPVLQQSFC 642 (1118)
T ss_pred HHHHHhhChHhhhhcccccchhhccccchHHHhhhhhhccchhhhhhhhHHHhhhhhhhhcccCceeeecchhHHHHHhh
Confidence 999886654222111 1234443333222221110 00000000000 011223457899999
Q ss_pred eEEEEEEEecCCCCccceeeeeeeeeeccccc--------cCCHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEee
Q 003960 605 GRLWSKVKCLRCSHESERYENIMDLTLEIYGW--------VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSI 676 (783)
Q Consensus 605 g~l~~~i~C~~C~~~s~~~e~f~~LsL~I~~~--------~~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i 676 (783)
..++....|..|+..+.+......+.+..|+. ...+.+.|..-..... ..+-+|+.|++......+..+
T Consensus 643 ~~~e~~~~Cg~C~~~~~~~k~l~~~~lsyp~~~~id~~~~~~~F~~iL~R~l~l~k---n~~~~C~~C~k~ep~~q~~~v 719 (1118)
T KOG1275|consen 643 QEIEKSLRCGECGDEKQKSKSLLRKVLSYPNVLLIDTLAKSNNFVEILKRSLSLFK---NKQAWCETCTKPEPTSQKKNV 719 (1118)
T ss_pred hHHHHhhhcccccchhhhhhhhhheeecCCCccchhhcccccchHHHhhhhhhccc---ccccccccccCCCCccccccc
Confidence 99999999999999977766666666666642 1234444443332211 112689999999999999999
Q ss_pred ecCCceEEEEEEeeecCcc------cccceEEecCCccCCCccccC------------------CCCCCCcEEEEEEEEE
Q 003960 677 HEAPNILTIVLKRFQEGRY------GKINKCITFPEMLDMMPFMTG------------------TGDTPPLYMLYSVVVH 732 (783)
Q Consensus 677 ~~lP~iLiIqL~RF~~~~~------~Ki~~~V~fP~~LDL~~~~~~------------------~~~~~~~Y~L~gVV~H 732 (783)
..+|++|.|...-+..+.+ .|.-..|++|..+.|...... +...-..|+|.|+|+|
T Consensus 720 r~LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP~~~~~~~~k~~~~~v~~~s~~~~~~~~~~d~~~~~vYeL~a~V~~ 799 (1118)
T KOG1275|consen 720 RSLPDCLSINTCLNVHELVDFWARQNKLLEDVWLPEWFHMIISKNKAQLVSTISDLDVSPLPDYDEPSAVVYELDAMVHA 799 (1118)
T ss_pred ccCcceeeeeeeccchhhhhhHHHhhccccccccchheeEEEecccceeeeeeccccCCCCccccCCceEEEEeeeEEEE
Confidence 9999999999988754321 356677899988777533221 1112368999999999
Q ss_pred ecCCCCCCCCeEEEEEEcC---------CCCEEEEcCCeeeeeCCCccCC-----CCcEEEEE
Q 003960 733 LDTQNASFSGHYVSYIKDM---------QGTWFRIDDTQVHPVPMSQVMS-----EGAYMLFY 781 (783)
Q Consensus 733 ~G~~~s~~sGHYva~Vk~~---------~~~W~~fNDs~Vt~vs~e~v~~-----~~aYILfY 781 (783)
.|+ +-+.+|+|++||.. +.+||+|||..|.+++++++.. +.|-||+|
T Consensus 800 I~d--~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~EAl~~~~~WKvP~Il~Y 860 (1118)
T KOG1275|consen 800 IGD--NENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEEEALHFDGPWKVPAILYY 860 (1118)
T ss_pred ecc--CCCccceEEEEEccCcccccCcCcceeEEEcceeeeeCChHHheEeccCccCcEEEEE
Confidence 998 55689999999952 4699999999999999988764 67999999
No 40
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=98.86 E-value=8.4e-09 Score=105.82 Aligned_cols=149 Identities=18% Similarity=0.370 Sum_probs=94.9
Q ss_pred cccccccccceEEEEEEEecCCCCccce-----eeeeeeeeeccccccCCHHHHHhhcCCCccCCCCCccccCccCccee
Q 003960 595 ETTFIQHTFGGRLWSKVKCLRCSHESER-----YENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVR 669 (783)
Q Consensus 595 ~~siI~~lF~g~l~~~i~C~~C~~~s~~-----~e~f~~LsL~I~~~~~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~ 669 (783)
....+.++|...+.-...|..||..... ...|..+ +|+ |.. +....--.|.+|+.+..
T Consensus 119 ~d~~~E~lF~~sf~WeFeC~~Cg~~~~~R~~K~L~TFtnv---~pd-----------whP---LnA~h~~pCn~C~~ksQ 181 (275)
T PF15499_consen 119 LDPWIEKLFLYSFSWEFECSQCGHKYQNRCTKTLVTFTNV---IPD-----------WHP---LNAVHFGPCNSCNSKSQ 181 (275)
T ss_pred cchHHHhHhheeeEEEEEccccCChhhhhheeeecccCCC---CCC-----------CCc---ccccccCCCcccCChHH
Confidence 4456889999999999999999987322 1122221 121 111 11111146999988654
Q ss_pred eEEEEeeecCCceEEEEEEeeecCcccccceEEecCCccCCCccccCCCCCCCcEEEEEEEEEecCCCCCCCCeEEEEEE
Q 003960 670 ARKQLSIHEAPNILTIVLKRFQEGRYGKINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIK 749 (783)
Q Consensus 670 a~k~~~i~~lP~iLiIqL~RF~~~~~~Ki~~~V~fP~~LDL~~~~~~~~~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk 749 (783)
.+++.+.++|++|++|+. .|-..+ |+..|.-. -....|++.+||-+.-. --|++++++
T Consensus 182 -~rkMvlekv~~vfmLHFV---eGLP~n-----------dl~~ysF~--feg~~Y~Vt~VIQY~~~-----~~HFvtWi~ 239 (275)
T PF15499_consen 182 -RRKMVLEKVPPVFMLHFV---EGLPHN-----------DLQHYSFH--FEGCLYQVTSVIQYQAN-----LNHFVTWIR 239 (275)
T ss_pred -hHhhhhhcCchhhhhhhh---ccCCcc-----------CCCcccee--ecCeeEEEEEEEEEecc-----CceeEEEEE
Confidence 556889999999999954 332222 22111110 02467999999999864 579999999
Q ss_pred cCCCCEEEEcCCeeeee---CCCccCCCCcEEEEEE
Q 003960 750 DMQGTWFRIDDTQVHPV---PMSQVMSEGAYMLFYM 782 (783)
Q Consensus 750 ~~~~~W~~fNDs~Vt~v---s~e~v~~~~aYILfY~ 782 (783)
+.+|.|..+||-+=-.. ..-+|....--|+||+
T Consensus 240 ~~dGsWLecDDLkgp~~~~h~~~~vPasEiHIV~WE 275 (275)
T PF15499_consen 240 DSDGSWLECDDLKGPCCWRHKRFEVPASEIHIVIWE 275 (275)
T ss_pred cCCCCeEeeccCCCcchhccCCCCCChhHcEEEEeC
Confidence 99999999999764322 1123444455666653
No 41
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....
Probab=98.85 E-value=9.5e-10 Score=81.41 Aligned_cols=37 Identities=62% Similarity=1.213 Sum_probs=33.5
Q ss_pred cccccccCcccccCCccceecChhhhhhhhhHhhHHhc
Q 003960 103 CARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQEC 140 (783)
Q Consensus 103 C~~C~~~~~~~Cs~C~~~~YCs~~cQ~~~W~~~Hk~~C 140 (783)
|..|++++.++|++|+.++|||++||.+||+. ||.+|
T Consensus 1 C~~C~~~~~~~C~~C~~~~YCs~~Cq~~~w~~-Hk~~C 37 (37)
T PF01753_consen 1 CAVCGKPALKRCSRCKSVYYCSEECQRADWPY-HKFEC 37 (37)
T ss_dssp -TTTSSCSSEEETTTSSSEESSHHHHHHHHHH-HCCTH
T ss_pred CcCCCCCcCCcCCCCCCEEecCHHHHHHHHHH-HhhhC
Confidence 78999988889999999999999999999974 99887
No 42
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=98.44 E-value=4.9e-08 Score=101.22 Aligned_cols=42 Identities=50% Similarity=1.121 Sum_probs=38.3
Q ss_pred ccccccccc-CcccccCCccceecChhhhhhhhhHhhHHhchhh
Q 003960 101 QLCARCFAP-ATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQL 143 (783)
Q Consensus 101 ~~C~~C~~~-~~~~Cs~C~~~~YCs~~cQ~~~W~~~Hk~~C~~~ 143 (783)
..|..||.+ +.+||+.||.+.||+++||+.||.. ||++|..+
T Consensus 320 ~fCstCG~~ga~KrCs~CKav~YCdqeCQk~hWf~-HKK~C~~L 362 (396)
T KOG1710|consen 320 QFCSTCGHPGAKKRCSQCKAVAYCDQECQKFHWFI-HKKVCSFL 362 (396)
T ss_pred ccccccCCCCccchhhhhHHHHHHHHHHHHhhhHH-HHHHHHHH
Confidence 579999985 5589999999999999999999985 99999987
No 43
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]
Probab=96.80 E-value=0.00088 Score=74.87 Aligned_cols=99 Identities=19% Similarity=0.164 Sum_probs=49.4
Q ss_pred CcccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCcccCCCCchHHHHHHH-HHHHHHhCCCCCChHHHHHHHHhccc-
Q 003960 477 PRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQ-HVMMLRESAGPLSPGRILSHMRSISC- 554 (783)
Q Consensus 477 ~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~~~~~~~~l~~qL~~-L~~~L~s~~~~isP~~fl~~l~~~~~- 554 (783)
..|+.-.-|+||+||.|-++|......+-.+-.................|+. ++.-|+. ...+......+ ++....
T Consensus 368 ~kgiqgh~nscyldstlf~~f~f~sv~dS~l~rrp~p~d~~nYse~q~~LRseiVnplr~-n~fVr~~~~mk-lR~~ldq 445 (724)
T KOG3556|consen 368 IKGIQGHPNSCYLDSTLFKPFEFDSVTDSTLPRRPPPSDSMNYSEMQHSLRSEIVNPLRR-NQFVRQNPAMK-LRVELDQ 445 (724)
T ss_pred cccccCCcchhhccccccccccccccccccccCCCCcccccccHHHHHHHHHhhhchhhh-cceeecCHHHH-HHHHHHh
Confidence 4588888999999999999997655544333222211111112222222211 1122221 12222222222 222211
Q ss_pred -ccCCC---ccccHHHHHHHHHHHHHH
Q 003960 555 -QIGDG---SQEDAHEFLRLLVASMQS 577 (783)
Q Consensus 555 -~f~~g---~QQDA~EFL~~LLd~L~~ 577 (783)
.|..| ...|+.|||.-++..+-.
T Consensus 446 l~~~sG~tceekdpEEFLn~l~t~i~r 472 (724)
T KOG3556|consen 446 LNFRSGDTCEEKDPEEFLNGLKTLIAR 472 (724)
T ss_pred hhccccCcccccCHHHHHHHHHHHhcc
Confidence 23333 578999999998877643
No 44
>KOG2061 consensus Uncharacterized MYND Zn-finger protein [General function prediction only]
Probab=96.55 E-value=0.0014 Score=71.39 Aligned_cols=55 Identities=36% Similarity=0.744 Sum_probs=47.6
Q ss_pred CCCcCccccccccccCcccccCCccceecChhhhhhhhhHhhHHhchhhhhccCC
Q 003960 95 TSKNGFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEKTSSS 149 (783)
Q Consensus 95 ~~~~~~~~C~~C~~~~~~~Cs~C~~~~YCs~~cQ~~~W~~~Hk~~C~~~~~~~~~ 149 (783)
..+.+...|..|+..+...|++|+.+.|||+.+|..||+.+|+..|.+.....+.
T Consensus 131 ~~~~~~~~~~~~~~~a~~~~~~~~~a~~~S~~~q~~d~~~~~~~a~aq~~~~~~~ 185 (362)
T KOG2061|consen 131 ADKDGADLCGSCGCSAPAACSPCKAAAYCSKKHQSLDWPKGHKDACAQPSTLGEI 185 (362)
T ss_pred ccCcccchhccCcccCcccccccchhhhcCchhhcccccccccccccCccccccc
Confidence 3455678999999999999999999999999999999998899999877655443
No 45
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.42 E-value=0.0007 Score=76.36 Aligned_cols=42 Identities=36% Similarity=0.930 Sum_probs=37.3
Q ss_pred cccccccccCcccccCCccceecChhhhhhhhhHhhHHhchhhhh
Q 003960 101 QLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEK 145 (783)
Q Consensus 101 ~~C~~C~~~~~~~Cs~C~~~~YCs~~cQ~~~W~~~Hk~~C~~~~~ 145 (783)
.=|++|...|-..| |-.+.|||.+||..||+. |++.|++-..
T Consensus 528 QWC~nC~~EAiy~C--CWNTSYCsveCQQ~HW~~-H~ksCrrk~~ 569 (588)
T KOG3612|consen 528 QWCYNCLDEAIYHC--CWNTSYCSVECQQGHWPE-HRKSCRRKKT 569 (588)
T ss_pred HHHHhhhHHHHHHh--hccccccCcchhhccchh-HhhhhcccCC
Confidence 35999999998888 899999999999999995 9999987654
No 46
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.0076 Score=71.04 Aligned_cols=99 Identities=23% Similarity=0.337 Sum_probs=57.1
Q ss_pred cccCCCcccHHHHHHHHhcCHHHHHHHHhccc---CcccC-----CCCchHHHHHHHHHHHH---HhC-----CCCCChH
Q 003960 480 LLNCGNSCYANAVLQCLTCTKPLVIYLLRRSH---SSACC-----GKDWCLMCELEQHVMML---RES-----AGPLSPG 543 (783)
Q Consensus 480 L~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~---~~~~~-----~~~~~l~~qL~~L~~~L---~s~-----~~~isP~ 543 (783)
|.|.||+||.||+||+|..+|+|+-.+..... ..... .......+....+...+ ... .-.++-.
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 113 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKNSSSNESFNLSVT 113 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhccCCccccccchHH
Confidence 99999999999999999999999876643211 11000 01111111111111111 111 0112223
Q ss_pred HHHHHH---HhcccccCCCccccHHHHHHHHHHHHHHH
Q 003960 544 RILSHM---RSISCQIGDGSQEDAHEFLRLLVASMQSI 578 (783)
Q Consensus 544 ~fl~~l---~~~~~~f~~g~QQDA~EFL~~LLd~L~~e 578 (783)
.+...+ .+....|....|+||++|+.-|+-.+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~ 151 (587)
T KOG1864|consen 114 QLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDV 151 (587)
T ss_pred HHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhh
Confidence 333333 23345688889999999999988877664
No 47
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=93.89 E-value=0.013 Score=69.53 Aligned_cols=161 Identities=17% Similarity=0.270 Sum_probs=96.4
Q ss_pred ccccccccceEEEEEEEecCCCCccceeeeeeeeeecccc----------ccCCHHHHHhhcCCCccCCCCCcccc----
Q 003960 596 TTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYG----------WVESLEDALTQFTSPEDLDGENMYKC---- 661 (783)
Q Consensus 596 ~siI~~lF~g~l~~~i~C~~C~~~s~~~e~f~~LsL~I~~----------~~~sLed~L~~~~~~E~l~g~n~y~C---- 661 (783)
.+++.++|+.....+..|..|+......+ .....+.+.. ...++++.|+. ...+.. ..|
T Consensus 593 ~~l~~~lf~l~~~e~~Sc~~cr~~~n~pe-qsS~~~~~~a~slr~~k~a~~n~~f~~ilk~-i~m~~~-----m~cD~~~ 665 (806)
T KOG1887|consen 593 ESLVNRLFTLEEKERMSCSKCRRDLNYPE-QSSYGIVIAADSLRQLKCAFQNITFEDILKN-IRMNDK-----MLCDKET 665 (806)
T ss_pred HHHHHhhhhhhhhhhccccccccCCCCcc-hhhhhhhccchhhhhHHHHhhhhhHHHHHHH-hhhhhh-----hcccccC
Confidence 35678899999999999999987743321 1111111111 12455566655 222211 233
Q ss_pred CccCcceeeEEEEeeecCCceEEEEEEeeecCccc-ccceEEecCCccCCCccccCCCCCCCcEEEEEEEEEecCCCCCC
Q 003960 662 ARCATYVRARKQLSIHEAPNILTIVLKRFQEGRYG-KINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASF 740 (783)
Q Consensus 662 ~~C~~~~~a~k~~~i~~lP~iLiIqL~RF~~~~~~-Ki~~~V~fP~~LDL~~~~~~~~~~~~~Y~L~gVV~H~G~~~s~~ 740 (783)
..||+..... ..|...|+|++|.+.+=....-. --.+...+..++|++.....+.....+|+|+++|.-...
T Consensus 666 gGCgk~n~v~--h~is~~P~vftIvlewEk~ETe~eI~~T~~aL~teidis~~y~~g~ep~t~yrLVSmv~~~e~----- 738 (806)
T KOG1887|consen 666 GGCGKANLVH--HILSPCPPVFTIVLEWEKSETEKEISETTKALATEIDISRLYREGLEPNTKYRLVSMVGNHEE----- 738 (806)
T ss_pred CCCcchhhhh--hhcCCCCCeeEeeeehhcccchHHHHHHHHHHHhhhhHHHHhhhccCcCceeEEEEEeeeccc-----
Confidence 3577644333 25788999999976653211110 001112234566776544344455779999999988753
Q ss_pred CCeEEEEEEcCCCCEE--EEcCCeeeee-CCCcc
Q 003960 741 SGHYVSYIKDMQGTWF--RIDDTQVHPV-PMSQV 771 (783)
Q Consensus 741 sGHYva~Vk~~~~~W~--~fNDs~Vt~v-s~e~v 771 (783)
.++|.|+.+. .++|+ ..+|..+..+ +|.+|
T Consensus 739 ~~~~~C~Aye-~Nrwvs~r~~~~~~e~iG~w~dv 771 (806)
T KOG1887|consen 739 GEEYICFAYE-PNRWVSLRHEDSQGEVVGDWKDV 771 (806)
T ss_pred cceEEEeecc-CCcchhhHHHHHHhhhccchHHH
Confidence 5899999998 78888 8898877666 34444
No 48
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=93.85 E-value=0.21 Score=54.65 Aligned_cols=76 Identities=20% Similarity=0.203 Sum_probs=40.6
Q ss_pred CCcccccCCCcccHHHHHHHHhcCHH-HHHHHHhcccCcccCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHhccc
Q 003960 476 SPRGLLNCGNSCYANAVLQCLTCTKP-LVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISC 554 (783)
Q Consensus 476 ~~~GL~NlGNTCYmNSVLQ~L~~ip~-fr~~ll~~~~~~~~~~~~~~l~~qL~~L~~~L~s~~~~isP~~fl~~l~~~~~ 554 (783)
|.+=|+=.-|+||+||++=+|-++.. |+.. .++.++..+. .=+|..|...+-.. .
T Consensus 101 g~~~Lkq~dNNCwVna~~~~LQ~~~~~f~~~-------------------~l~~aw~~f~----~G~~~~fVa~~Ya~-~ 156 (320)
T PF08715_consen 101 GFRVLKQSDNNCWVNAACLQLQALKIKFKSP-------------------GLDEAWNEFK----AGDPAPFVAWCYAS-T 156 (320)
T ss_dssp TEEEE---TTTHHHHHHHHHHTTST--BSSH-------------------HHHHHHHHHH----TT--HHHHHHHHHH-T
T ss_pred CEEEEEecCCCcHHHHHHHHHHhcCCccCCH-------------------HHHHHHHHHh----CCChHHHHHHHHHH-c
Confidence 44455556799999999988876532 2211 1222333333 22466777666443 3
Q ss_pred ccCCCccccHHHHHHHHHHHH
Q 003960 555 QIGDGSQEDAHEFLRLLVASM 575 (783)
Q Consensus 555 ~f~~g~QQDA~EFL~~LLd~L 575 (783)
.+..|+..||+++|..|++.+
T Consensus 157 ~~~~G~~gDa~~~L~~ll~~~ 177 (320)
T PF08715_consen 157 NAKKGDPGDAEYVLSKLLKDA 177 (320)
T ss_dssp T--TTS---HHHHHHHHHTTB
T ss_pred CCCCCCCcCHHHHHHHHHHhc
Confidence 566789999999999998654
No 49
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=93.66 E-value=0.068 Score=42.95 Aligned_cols=45 Identities=24% Similarity=0.561 Sum_probs=37.9
Q ss_pred ccccccc----cCcccccCCccceecChhhhhhhhhHhhHHhchhhhhcc
Q 003960 102 LCARCFA----PATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEKTS 147 (783)
Q Consensus 102 ~C~~C~~----~~~~~Cs~C~~~~YCs~~cQ~~~W~~~Hk~~C~~~~~~~ 147 (783)
.|..|+. .....|..|....|||+++=..|-+. |++.|..+.+.+
T Consensus 1 ~Cpv~~~~~~~~v~~~Cp~cGipthcS~ehw~~D~e~-H~~~c~~LRqvN 49 (55)
T PF13824_consen 1 LCPVCKKDLPAHVNFECPDCGIPTHCSEEHWEDDYEE-HRQLCERLRQVN 49 (55)
T ss_pred CCCCCccccccccCCcCCCCCCcCccCHHHHHHhHHH-HHHHHHHHHHhc
Confidence 3778877 45578999999999999999999876 999999887643
No 50
>PLN03158 methionine aminopeptidase; Provisional
Probab=92.32 E-value=0.088 Score=59.61 Aligned_cols=40 Identities=35% Similarity=0.850 Sum_probs=34.6
Q ss_pred cccccccccCcccccCCcc-------ceecChhhhhhhhhHhhHHhch
Q 003960 101 QLCARCFAPATTRCSRCKS-------VRYCSGKCQIIHWRQVHKQECQ 141 (783)
Q Consensus 101 ~~C~~C~~~~~~~Cs~C~~-------~~YCs~~cQ~~~W~~~Hk~~C~ 141 (783)
..|..|++.+.+.|-.|.. .++||.+|=+..|+. ||..=.
T Consensus 10 ~~c~~c~~~a~l~Cp~C~k~~~~~~~s~fCsq~CFk~~w~~-Hk~~h~ 56 (396)
T PLN03158 10 LACARCSKPAHLQCPKCLELKLPREGASFCSQDCFKAAWSS-HKSVHT 56 (396)
T ss_pred ccccCCCCcccccCccchhcCCCCCCceeECHHHHHHHHHH-HHHHHH
Confidence 5699999999898988865 679999999999996 987753
No 51
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=90.30 E-value=0.11 Score=51.64 Aligned_cols=36 Identities=19% Similarity=0.251 Sum_probs=26.7
Q ss_pred EEEEEEecCCCCCCCCeEEEEEEcCCCCEEEEcCCeeeeeCCC
Q 003960 727 YSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMS 769 (783)
Q Consensus 727 ~gVV~H~G~~~s~~sGHYva~Vk~~~~~W~~fNDs~Vt~vs~e 769 (783)
.+.|.-.| .||.+.+.+. .+.||.|||+.+.+.++.
T Consensus 130 ~agi~~~g------~~Havfa~~t-s~gWy~iDDe~~y~~tPd 165 (193)
T PF05408_consen 130 HAGIFLKG------QEHAVFACVT-SDGWYAIDDEDFYPWTPD 165 (193)
T ss_dssp EEEEEEES------TTEEEEEEEE-TTCEEEEETTEEEE----
T ss_pred hhHheecC------CcceEEEEEe-eCcEEEecCCeeeeCCCC
Confidence 45566666 4999999987 788999999999998654
No 52
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=86.00 E-value=0.37 Score=33.98 Aligned_cols=28 Identities=46% Similarity=1.017 Sum_probs=21.7
Q ss_pred cccccccccCcccccCCccceecChhhhh
Q 003960 101 QLCARCFAPATTRCSRCKSVRYCSGKCQI 129 (783)
Q Consensus 101 ~~C~~C~~~~~~~Cs~C~~~~YCs~~cQ~ 129 (783)
..|..|+..+.-+|.+|... |||.+|-+
T Consensus 3 ~~C~vC~~~~kY~Cp~C~~~-~CSl~C~k 30 (30)
T PF04438_consen 3 KLCSVCGNPAKYRCPRCGAR-YCSLACYK 30 (30)
T ss_dssp EEETSSSSEESEE-TTT--E-ESSHHHHH
T ss_pred CCCccCcCCCEEECCCcCCc-eeCcEeEC
Confidence 47999999777899999987 99999853
No 53
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=73.40 E-value=7.4 Score=39.07 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=17.2
Q ss_pred cCCcccccCCCcccHHHHHHHHhcC
Q 003960 475 LSPRGLLNCGNSCYANAVLQCLTCT 499 (783)
Q Consensus 475 ~~~~GL~NlGNTCYmNSVLQ~L~~i 499 (783)
..++|+.|.+|+||+||++|++..+
T Consensus 31 ~eft~~PN~~dnCWlNaL~QL~~~~ 55 (193)
T PF05408_consen 31 MEFTGLPNNHDNCWLNALLQLFRYV 55 (193)
T ss_dssp -EEE----SSSTHHHHHHHHHHHHH
T ss_pred eEEecCCCCCCChHHHHHHHHHHHc
Confidence 4467999999999999999998743
No 54
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=71.76 E-value=2 Score=41.19 Aligned_cols=33 Identities=30% Similarity=0.705 Sum_probs=28.6
Q ss_pred cccccccccCcccccCCccceecChhhhhhhhhH
Q 003960 101 QLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQ 134 (783)
Q Consensus 101 ~~C~~C~~~~~~~Cs~C~~~~YCs~~cQ~~~W~~ 134 (783)
+.|++||-...-.|..|..- |||..|-..|-.+
T Consensus 119 ~fCaVCG~~S~ysC~~CG~k-yCsv~C~~~HneT 151 (156)
T KOG3362|consen 119 KFCAVCGYDSKYSCVNCGTK-YCSVRCLKTHNET 151 (156)
T ss_pred hhhhhcCCCchhHHHhcCCc-eeechhhhhcccc
Confidence 58999998888899999875 9999999877654
No 55
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=61.12 E-value=3.4 Score=39.52 Aligned_cols=37 Identities=30% Similarity=0.942 Sum_probs=28.7
Q ss_pred cccccccccC-cccccCCccceecChhhhhhhhhHhhHH--hchhh
Q 003960 101 QLCARCFAPA-TTRCSRCKSVRYCSGKCQIIHWRQVHKQ--ECQQL 143 (783)
Q Consensus 101 ~~C~~C~~~~-~~~Cs~C~~~~YCs~~cQ~~~W~~~Hk~--~C~~~ 143 (783)
..|..|.+.. ..+|..|..- |||..| |+. ||. .|.+.
T Consensus 6 ~tC~ic~e~~~KYKCpkC~vP-YCSl~C----fKi-Hk~tPq~~~v 45 (157)
T KOG2857|consen 6 TTCVICLESEIKYKCPKCSVP-YCSLPC----FKI-HKSTPQCETV 45 (157)
T ss_pred eeehhhhcchhhccCCCCCCc-cccchh----hhh-ccCCcccccc
Confidence 4688998854 5799999865 999999 875 888 56543
No 56
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=50.78 E-value=4.9 Score=30.55 Aligned_cols=29 Identities=38% Similarity=1.015 Sum_probs=22.0
Q ss_pred cccccccccCc--ccccCC-ccceecChhhhh
Q 003960 101 QLCARCFAPAT--TRCSRC-KSVRYCSGKCQI 129 (783)
Q Consensus 101 ~~C~~C~~~~~--~~Cs~C-~~~~YCs~~cQ~ 129 (783)
..|.+||.+-. ++-.+| -.|.|||..|..
T Consensus 9 K~C~~C~rpf~WRKKW~~~Wd~VkYCS~rCR~ 40 (42)
T PF10013_consen 9 KICPVCGRPFTWRKKWARCWDEVKYCSDRCRR 40 (42)
T ss_pred CcCcccCCcchHHHHHHHhchhhccHHHHhcc
Confidence 57999999765 445555 378899999964
No 57
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=47.65 E-value=15 Score=30.24 Aligned_cols=31 Identities=26% Similarity=0.592 Sum_probs=23.1
Q ss_pred cccccccccCcccccCCccceecChhhhhhhhhHhhHH
Q 003960 101 QLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQ 138 (783)
Q Consensus 101 ~~C~~C~~~~~~~Cs~C~~~~YCs~~cQ~~~W~~~Hk~ 138 (783)
+.|.+||++-.. .-.|||.+|+...++. +|+
T Consensus 4 kHC~~CG~~Ip~------~~~fCS~~C~~~~~k~-qk~ 34 (59)
T PF09889_consen 4 KHCPVCGKPIPP------DESFCSPKCREEYRKR-QKR 34 (59)
T ss_pred CcCCcCCCcCCc------chhhhCHHHHHHHHHH-HHH
Confidence 579999985543 2459999999888875 554
No 58
>PRK01343 zinc-binding protein; Provisional
Probab=46.82 E-value=18 Score=29.62 Aligned_cols=27 Identities=30% Similarity=0.768 Sum_probs=21.4
Q ss_pred cccccccccCcccccCCccceecChhhhhhhh
Q 003960 101 QLCARCFAPATTRCSRCKSVRYCSGKCQIIHW 132 (783)
Q Consensus 101 ~~C~~C~~~~~~~Cs~C~~~~YCs~~cQ~~~W 132 (783)
..|..|+++... ....|||+.|+..|-
T Consensus 10 ~~CP~C~k~~~~-----~~rPFCS~RC~~iDL 36 (57)
T PRK01343 10 RPCPECGKPSTR-----EAYPFCSERCRDIDL 36 (57)
T ss_pred CcCCCCCCcCcC-----CCCcccCHHHhhhhH
Confidence 579999997542 356899999999883
No 59
>KOG4317 consensus Predicted Zn-finger protein [Function unknown]
Probab=44.73 E-value=8.6 Score=41.51 Aligned_cols=35 Identities=40% Similarity=0.915 Sum_probs=27.6
Q ss_pred cccccccc-cCcccccCCccceecChhhhhhhhhHhhHHhch
Q 003960 101 QLCARCFA-PATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQ 141 (783)
Q Consensus 101 ~~C~~C~~-~~~~~Cs~C~~~~YCs~~cQ~~~W~~~Hk~~C~ 141 (783)
-.|..|+. +...+|-||..- |||-.|- +. |+..|.
T Consensus 8 ~~C~ic~vq~~~YtCPRCn~~-YCsl~CY----r~-h~~~Cs 43 (383)
T KOG4317|consen 8 LACGICGVQKREYTCPRCNLL-YCSLKCY----RN-HKHSCS 43 (383)
T ss_pred eeccccccccccccCCCCCcc-ceeeeee----cC-CCccch
Confidence 35889987 555799999876 9999995 44 777785
No 60
>PF03292 Pox_P4B: Poxvirus P4B major core protein; InterPro: IPR004972 This family is the Poxvirus P4B major core protein. It is a precursor for one of the two most abundant structural components of the virion (major core proteins 4A and 4B).
Probab=43.23 E-value=33 Score=40.49 Aligned_cols=74 Identities=16% Similarity=0.169 Sum_probs=46.6
Q ss_pred ceEEEEEEeeec-----C----c--ccccceEEecCCccCCCccccCCCCCCCcEEEEEEEEEecCCC--------CC-C
Q 003960 681 NILTIVLKRFQE-----G----R--YGKINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQN--------AS-F 740 (783)
Q Consensus 681 ~iLiIqL~RF~~-----~----~--~~Ki~~~V~fP~~LDL~~~~~~~~~~~~~Y~L~gVV~H~G~~~--------s~-~ 740 (783)
-+|++.+.|-.. | . ..-.+.+|++..++.+ ....|+|.+.|||.-... .. -
T Consensus 479 GvLIfyVeRRq~k~~~~Gec~tg~rs~ind~pidv~q~i~i---------ngimyrL~SAVCYK~~d~~~d~C~~~difl 549 (666)
T PF03292_consen 479 GVLIFYVERRQNKNTFSGECYTGFRSRINDSPIDVSQEITI---------NGIMYRLKSAVCYKIGDQFFDGCNGNDIFL 549 (666)
T ss_pred ceEEEEEeehhccceeccccccchhhhhcCcccccccceee---------cceeeeeehhheeeccccccCCCCCCccee
Confidence 789999998421 1 1 1345566777766666 356899999999953210 11 1
Q ss_pred CCeEEEEEEcCCCCEEEEcCCeeee
Q 003960 741 SGHYVSYIKDMQGTWFRIDDTQVHP 765 (783)
Q Consensus 741 sGHYva~Vk~~~~~W~~fNDs~Vt~ 765 (783)
.|||+ .++. +..||++|-..|-.
T Consensus 550 kG~yt-IlfT-e~Gpw~YDP~s~~s 572 (666)
T PF03292_consen 550 KGYYT-ILFT-EMGPWMYDPLSIFS 572 (666)
T ss_pred ceeEE-EEEe-cCCceeeCchhhcC
Confidence 38885 5555 45688888765543
No 61
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=43.15 E-value=19 Score=29.96 Aligned_cols=35 Identities=20% Similarity=0.506 Sum_probs=28.3
Q ss_pred CccccCccCcceeeEEEEeee--cCCceEEEEEEeee
Q 003960 657 NMYKCARCATYVRARKQLSIH--EAPNILTIVLKRFQ 691 (783)
Q Consensus 657 n~y~C~~C~~~~~a~k~~~i~--~lP~iLiIqL~RF~ 691 (783)
+.+.|++|+...-..+++... .+.+++=||.++|-
T Consensus 3 ~~~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~ 39 (68)
T COG3478 3 NAFKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFI 39 (68)
T ss_pred ccccCCCcCCcchhhceeeccCCCcceeEEecccEEE
Confidence 457799999987777776664 68899999999984
No 62
>PF14353 CpXC: CpXC protein
Probab=37.56 E-value=42 Score=31.66 Aligned_cols=48 Identities=19% Similarity=0.419 Sum_probs=24.5
Q ss_pred EEecCCCCccceeeeeeeeeeccccccCCHHHHHhhcCCCccCCCCCccccCccCccee
Q 003960 611 VKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVR 669 (783)
Q Consensus 611 i~C~~C~~~s~~~e~f~~LsL~I~~~~~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~ 669 (783)
+.|..|++..... .+..|..... ..+.+.| +..+.. .+.|+.||....
T Consensus 2 itCP~C~~~~~~~-v~~~I~~~~~---p~l~e~i---l~g~l~----~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 2 ITCPHCGHEFEFE-VWTSINADED---PELKEKI---LDGSLF----SFTCPSCGHKFR 49 (128)
T ss_pred cCCCCCCCeeEEE-EEeEEcCcCC---HHHHHHH---HcCCcC----EEECCCCCCcee
Confidence 6799998863321 2222222221 1233332 233332 399999998654
No 63
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=35.22 E-value=25 Score=42.23 Aligned_cols=40 Identities=35% Similarity=0.653 Sum_probs=29.6
Q ss_pred ccccccc----ccCcccccCCc-------cceecChhhhhhhhhHhhHHhch
Q 003960 101 QLCARCF----APATTRCSRCK-------SVRYCSGKCQIIHWRQVHKQECQ 141 (783)
Q Consensus 101 ~~C~~C~----~~~~~~Cs~C~-------~~~YCs~~cQ~~~W~~~Hk~~C~ 141 (783)
+.|+.|. +.+...|-.|. ...+||.+|=+..|+. ||..=.
T Consensus 60 ~~~~~c~~h~~~~a~lqCp~C~k~~~~~~~s~fCsq~CFk~~w~~-Hk~~h~ 110 (606)
T PLN03144 60 RKVAVCSVHPSEPATLQCVGCVKAKLPVSKSYHCSPKCFSDAWRH-HRVLHE 110 (606)
T ss_pred ccceeEeecCCCcccccCccchhcCCCcCcceeeCHHHHHHHHHH-HHHHHH
Confidence 3567774 45556777774 2678999999999996 988753
No 64
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.58 E-value=4.7 Score=31.40 Aligned_cols=28 Identities=36% Similarity=1.041 Sum_probs=22.6
Q ss_pred cccccccccCc--ccccCCc-cceecChhhh
Q 003960 101 QLCARCFAPAT--TRCSRCK-SVRYCSGKCQ 128 (783)
Q Consensus 101 ~~C~~C~~~~~--~~Cs~C~-~~~YCs~~cQ 128 (783)
.+|.+|+++.. ++-.+|- .|+|||..|.
T Consensus 13 KICpvCqRPFsWRkKW~~cWDeVKyCSeRCr 43 (54)
T COG4338 13 KICPVCQRPFSWRKKWARCWDEVKYCSERCR 43 (54)
T ss_pred hhhhhhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999765 5667774 7899999997
No 65
>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]. Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.
Probab=29.69 E-value=27 Score=26.93 Aligned_cols=31 Identities=19% Similarity=0.475 Sum_probs=22.0
Q ss_pred cccccccccCcccccCCccceecChhhhhhhhhH
Q 003960 101 QLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQ 134 (783)
Q Consensus 101 ~~C~~C~~~~~~~Cs~C~~~~YCs~~cQ~~~W~~ 134 (783)
..|..|.+.-.. ..-..-|||.+|..+|+..
T Consensus 7 ~yC~~Cdk~~~~---~~~~~lYCSe~Cr~~D~~~ 37 (43)
T PF12855_consen 7 DYCIVCDKQIDP---PDDGSLYCSEECRLKDQEK 37 (43)
T ss_pred hHHHHhhccccC---CCCCccccCHHHHhHhhhc
Confidence 468888873311 3345569999999999964
No 66
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=26.89 E-value=56 Score=20.22 Aligned_cols=15 Identities=27% Similarity=1.006 Sum_probs=11.5
Q ss_pred EEEEcCCCCEEEEcCC
Q 003960 746 SYIKDMQGTWFRIDDT 761 (783)
Q Consensus 746 a~Vk~~~~~W~~fNDs 761 (783)
.+++. ++.||.|+++
T Consensus 2 ~W~~~-~~~wYy~~~~ 16 (19)
T PF01473_consen 2 GWVQD-NGNWYYFDSD 16 (19)
T ss_dssp EEEEE-TTEEEEETTT
T ss_pred cCEEE-CCEEEEeCCC
Confidence 35666 7999999875
No 67
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=25.74 E-value=31 Score=37.33 Aligned_cols=40 Identities=28% Similarity=0.687 Sum_probs=33.5
Q ss_pred ccc--ccccccCcccccCCc-----cceecChhhhhhhhhHhhHHhch
Q 003960 101 QLC--ARCFAPATTRCSRCK-----SVRYCSGKCQIIHWRQVHKQECQ 141 (783)
Q Consensus 101 ~~C--~~C~~~~~~~Cs~C~-----~~~YCs~~cQ~~~W~~~Hk~~C~ 141 (783)
..| ..|++++...|..|. ....|+.+|-+.-|.. ||+.-.
T Consensus 7 ~~c~~~~c~~~a~l~Cp~c~~~~i~~~~fc~q~cf~~~w~~-hK~~h~ 53 (369)
T KOG2738|consen 7 ISCEGLQCGSEASLQCPTCLKLGIKSAYFCAQECFKNSWLS-HKKLHR 53 (369)
T ss_pred ceeeccccCChhhccCchhhhcCCCcccccCchhhhcchhh-hhhhcc
Confidence 468 789998889999885 4579999999999996 998764
No 68
>PF02099 Josephin: Josephin; InterPro: IPR006155 Human genes containing triplet repeats can markedly expand in length, leading to neuropsychiatric disease. Expansion of triplet repeats explains the phenomenon of anticipation, i.e. the increasing severity or earlier age of onset in successive generations in a pedigree []. A novel gene containing CAG repeats has been identified and mapped to chromosome 14q32.1, the genetic locus for Machado-Joseph disease (MJD). Normally, the gene contains 13-36 CAG repeats, but most clinically diagnosed patients and all affected members of a family with the clinical and pathological diagnosis of MJD show expansion of the repeat number, from 68-79 []. Similar abnormalities in related genes may give rise to diseases similar to MJD. MJD is a neurodegenerative disorder characterised by cerebellar ataxia, pyramidal and extra-pyramidal signs, peripheral nerve palsy, external ophtalmoplegia, facial and lingual fasciculation and bulging. The disease is autosomal dominant, with late onset of symptoms, generally after the fourth decade.; GO: 0008242 omega peptidase activity; PDB: 3O65_G 1YZB_A 2JRI_A 2DOS_A 2AGA_A.
Probab=25.37 E-value=85 Score=31.06 Aligned_cols=31 Identities=23% Similarity=0.542 Sum_probs=24.7
Q ss_pred EEEEEEEecCCCCCCCCeEEEEEEcCCCCEEEEcCCeee
Q 003960 726 LYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVH 764 (783)
Q Consensus 726 L~gVV~H~G~~~s~~sGHYva~Vk~~~~~W~~fNDs~Vt 764 (783)
..|+|++. ..||+|.-|- +|.||-+|=..-.
T Consensus 99 ~~gfI~N~-------~~HWf~iRki-~~~wyNLDS~l~~ 129 (157)
T PF02099_consen 99 EFGFICNL-------SRHWFAIRKI-GGQWYNLDSKLKE 129 (157)
T ss_dssp SSEEEEEC-------TTEEEEEEEE-TTEEEEECTTTSS
T ss_pred ceEEEecc-------CcceEEEEee-CCeeEeccCCCCC
Confidence 46889994 4899998876 9999999875543
No 69
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=22.76 E-value=38 Score=24.00 Aligned_cols=22 Identities=41% Similarity=1.061 Sum_probs=12.4
Q ss_pred cccccccccCc-------ccccCCcccee
Q 003960 101 QLCARCFAPAT-------TRCSRCKSVRY 122 (783)
Q Consensus 101 ~~C~~C~~~~~-------~~Cs~C~~~~Y 122 (783)
+.|..||.+.. ++|..|....|
T Consensus 4 rfC~~CG~~t~~~~~g~~r~C~~Cg~~~y 32 (32)
T PF09297_consen 4 RFCGRCGAPTKPAPGGWARRCPSCGHEHY 32 (32)
T ss_dssp SB-TTT--BEEE-SSSS-EEESSSS-EE-
T ss_pred cccCcCCccccCCCCcCEeECCCCcCEeC
Confidence 57999997432 68988887665
No 70
>KOG4215 consensus Hepatocyte nuclear factor 4 and similar steroid hormone receptors [Transcription]
Probab=22.05 E-value=33 Score=38.14 Aligned_cols=38 Identities=26% Similarity=0.470 Sum_probs=25.4
Q ss_pred ccccccccccCc------ccccCCccceecChhhhhhhhhHhhHHhchhhh
Q 003960 100 FQLCARCFAPAT------TRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLE 144 (783)
Q Consensus 100 ~~~C~~C~~~~~------~~Cs~C~~~~YCs~~cQ~~~W~~~Hk~~C~~~~ 144 (783)
...|+.||-.+. ..|-+||-.+- +.-|+. |+..|+-.+
T Consensus 19 ~~~CaICGDkaTGKHYGA~SCdGCKGFFR------RSVrk~-~~YtCRF~k 62 (432)
T KOG4215|consen 19 AEFCAICGDKATGKHYGAISCDGCKGFFR------RSVRKN-HQYTCRFNK 62 (432)
T ss_pred cchhheeCCcccccccceeecCcchHHHH------HHHHhc-ceeeeeccc
Confidence 358999997554 58999996642 344665 776665443
No 71
>PF10748 DUF2531: Protein of unknown function (DUF2531); InterPro: IPR019684 This entry represents proteins with unknown function and appears to be restricted to Enterobacteriaceae.
Probab=21.25 E-value=1e+02 Score=29.70 Aligned_cols=32 Identities=22% Similarity=0.619 Sum_probs=26.6
Q ss_pred CCcEEEEEEEEEecCCCCCCCCeEEEEEEcCCCCEEEEcC
Q 003960 721 PPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDD 760 (783)
Q Consensus 721 ~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~~~~W~~fND 760 (783)
-..++|.|||-. .++|++++.+++++|.+.=.
T Consensus 33 Ls~WrlqGiVg~--------~~~~~gwl~~p~g~W~Rv~~ 64 (132)
T PF10748_consen 33 LSQWRLQGIVGQ--------GDRWIGWLQDPQGKWLRVRQ 64 (132)
T ss_pred cccceEccEECC--------CCcEEEEEECCCCCeEEecc
Confidence 357999999864 47899999999999998744
No 72
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=20.75 E-value=44 Score=24.38 Aligned_cols=21 Identities=29% Similarity=0.880 Sum_probs=12.1
Q ss_pred ccccccccCc-----------ccccCCcccee
Q 003960 102 LCARCFAPAT-----------TRCSRCKSVRY 122 (783)
Q Consensus 102 ~C~~C~~~~~-----------~~Cs~C~~~~Y 122 (783)
.|..||.+.. ..|..|..+.|
T Consensus 2 fC~~CG~~l~~~ip~gd~r~R~vC~~Cg~IhY 33 (34)
T PF14803_consen 2 FCPQCGGPLERRIPEGDDRERLVCPACGFIHY 33 (34)
T ss_dssp B-TTT--B-EEE--TT-SS-EEEETTTTEEE-
T ss_pred ccccccChhhhhcCCCCCccceECCCCCCEEe
Confidence 5888886422 37999998887
No 73
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=20.48 E-value=42 Score=37.69 Aligned_cols=83 Identities=18% Similarity=0.191 Sum_probs=50.0
Q ss_pred CCCCcccccccccccCcccccccccchhhhhhhhhcCceeecchhh---hhhccccccccCcCCcccccCCCcccHHHHH
Q 003960 417 QGSNVVSKMGIMKMMGLRKSTKLRQDSSELWHDQHRKLKMLFPYEE---FLKLFQYEVIDLLSPRGLLNCGNSCYANAVL 493 (783)
Q Consensus 417 ~~~~~L~~~Gi~k~~~l~~~~kt~~s~~el~~d~n~~~~~~~~~e~---~~~~~~~~~~~~~~~~GL~NlGNTCYmNSVL 493 (783)
+....+.-+++.+++.++.-... -+|..+..+ ..+..|+ ....+.+..-. ..++|+.|.||-|.+++..
T Consensus 123 ~d~~~~~l~t~~~~e~~~~g~qe---dAeefl~~~----ld~lhee~~~v~~~~~~~n~e-~t~~~~i~~~n~~n~~s~~ 194 (420)
T KOG1871|consen 123 PDPIYLDLLTMSRFESLQVGKQE---DAEEFLLDN----LDFLHEESSEVPTELVPPNDE-FTPRGLINNGNLCNLDSTE 194 (420)
T ss_pred CCchhhhcccCCchhhccccccc---cHHHHHHHH----HhhhhHHHHhhhhhhcCCccc-ccccccccccccccccchh
Confidence 34566777888766666543222 122111111 1222222 23333333333 5689999999999999999
Q ss_pred HHHhcCHHHHHHHH
Q 003960 494 QCLTCTKPLVIYLL 507 (783)
Q Consensus 494 Q~L~~ip~fr~~ll 507 (783)
|.+.+..++...+-
T Consensus 195 e~~~~~~~~~~~~g 208 (420)
T KOG1871|consen 195 EAGLSESSGVQLLG 208 (420)
T ss_pred hcccccCchhhhcC
Confidence 99999999987653
Done!