Query 003960
Match_columns 783
No_of_seqs 518 out of 2463
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 09:37:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003960.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003960hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 100.0 1.8E-58 6.2E-63 510.6 32.2 306 475-783 6-357 (367)
2 3nhe_A Ubiquitin carboxyl-term 100.0 2.1E-57 7.1E-62 496.1 30.2 305 475-783 7-341 (348)
3 2gfo_A Ubiquitin carboxyl-term 100.0 3E-57 1E-61 506.7 29.6 306 475-783 60-394 (396)
4 3i3t_A Ubiquitin carboxyl-term 100.0 2.5E-57 8.5E-62 496.8 22.8 304 475-783 1-349 (355)
5 3ihp_A Ubiquitin carboxyl-term 100.0 6.8E-56 2.3E-60 535.9 27.3 337 418-783 291-851 (854)
6 2ayn_A Ubiquitin carboxyl-term 100.0 7.3E-56 2.5E-60 495.2 23.6 302 475-783 12-392 (404)
7 1nb8_A Ubiquitin carboxyl-term 100.0 4.8E-55 1.6E-59 481.5 27.7 289 475-783 4-313 (353)
8 1vjv_A Ubiquitin carboxyl-term 100.0 7.9E-55 2.7E-59 489.4 22.6 286 475-783 22-412 (415)
9 3mhs_A Ubiquitin carboxyl-term 100.0 1E-53 3.6E-58 488.7 27.8 304 475-783 139-472 (476)
10 2f1z_A Ubiquitin carboxyl-term 100.0 3.5E-52 1.2E-56 481.6 26.0 290 474-783 172-482 (522)
11 2vhf_A Ubiquitin carboxyl-term 99.9 4.8E-28 1.6E-32 261.1 6.9 223 476-760 8-308 (374)
12 2d8q_A BLU protein, zinc finge 99.1 8.4E-11 2.9E-15 98.4 4.9 44 101-145 16-59 (70)
13 2od1_A Protein CBFA2T1; zinc f 98.9 2.5E-10 8.4E-15 92.8 2.9 43 101-144 14-56 (60)
14 2odd_A Protein CBFA2T1; MYND z 98.9 3E-10 1E-14 93.5 2.8 43 101-144 18-60 (64)
15 2dj8_A Protein CBFA2T1; zinc f 98.9 2.9E-10 9.8E-15 92.4 2.6 43 101-144 16-58 (60)
16 2jw6_A Deformed epidermal auto 98.9 7.4E-10 2.5E-14 87.2 2.8 41 101-142 10-50 (52)
17 3qwp_A SET and MYND domain-con 98.1 1.5E-06 5.2E-11 97.6 4.3 51 100-151 47-99 (429)
18 3qww_A SET and MYND domain-con 98.0 1.7E-06 5.8E-11 97.3 3.8 48 99-147 48-97 (433)
19 3n71_A Histone lysine methyltr 97.9 3.7E-06 1.3E-10 96.0 2.8 48 99-147 48-97 (490)
20 3mp2_A Non-structural protein 96.8 0.011 3.6E-07 59.3 12.6 181 478-767 14-195 (211)
21 2yqq_A Zinc finger HIT domain- 95.3 0.015 5.2E-07 45.8 4.0 41 97-143 9-49 (56)
22 2fe8_A PP1AB, ORF1AB, replicas 95.2 0.074 2.5E-06 56.5 10.3 194 476-768 101-296 (315)
23 1x4s_A Protein FON, zinc finge 88.5 0.16 5.5E-06 40.3 1.5 34 101-141 12-49 (59)
24 2kyg_C Protein CBFA2T1; protei 75.8 1 3.4E-05 31.7 1.3 27 18-44 5-31 (38)
25 1qmy_A Protease, leader protea 66.3 2.5 8.5E-05 39.3 2.0 38 725-769 108-145 (167)
26 2g45_A Ubiquitin carboxyl-term 42.1 5.8 0.0002 36.6 0.2 18 419-440 111-128 (129)
27 1lv3_A Hypothetical protein YA 34.9 14 0.00048 30.1 1.4 31 101-132 10-40 (68)
28 3a43_A HYPD, hydrogenase nicke 27.7 49 0.0017 30.6 4.1 16 606-621 66-81 (139)
29 2l8e_A Polyhomeotic-like prote 23.5 30 0.001 26.3 1.4 31 99-130 17-47 (49)
30 1wg2_A Zinc finger (AN1-like) 21.8 62 0.0021 26.0 3.0 23 101-125 16-41 (64)
31 1wfp_A Zinc finger (AN1-like) 20.9 64 0.0022 26.7 2.9 23 101-125 26-51 (74)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.8e-58 Score=510.64 Aligned_cols=306 Identities=28% Similarity=0.472 Sum_probs=265.7
Q ss_pred cCCcccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCccc-----CCCCchHHHHHHHHHHHHHhCC-CCCChHHHHHH
Q 003960 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC-----CGKDWCLMCELEQHVMMLRESA-GPLSPGRILSH 548 (783)
Q Consensus 475 ~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~~-----~~~~~~l~~qL~~L~~~L~s~~-~~isP~~fl~~ 548 (783)
+|++||.|+|||||||||||+|+++|+|+++|+...+.... .....++.++|+.|+..|+.+. ..++|..|+..
T Consensus 6 ~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~~~ 85 (367)
T 2y6e_A 6 PGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFKTQ 85 (367)
T ss_dssp TTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHHHHH
T ss_pred CCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHHHHH
Confidence 78999999999999999999999999999999875443221 1234579999999999999754 57999999999
Q ss_pred HHhcccccCCCccccHHHHHHHHHHHHHHHHhhhcCCCC--CCC----C------------ccccccccccccceEEEEE
Q 003960 549 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGES--KVD----P------------RLQETTFIQHTFGGRLWSK 610 (783)
Q Consensus 549 l~~~~~~f~~g~QQDA~EFL~~LLd~L~~e~~~~~~~~~--~~~----~------------~~~~~siI~~lF~g~l~~~ 610 (783)
++...+.|..++||||+|||.+||+.|++++........ ..+ + .....++|.++|+|++.++
T Consensus 86 l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l~s~ 165 (367)
T 2y6e_A 86 VGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKST 165 (367)
T ss_dssp HHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEEEEE
T ss_pred HHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccCcEEeee
Confidence 999999999999999999999999999987643211100 000 0 0123578999999999999
Q ss_pred EEecCCCCccceeeeeeeeeeccccc------------------cCCHHHHHhhcCCCccCCCCCccccCccCcceeeEE
Q 003960 611 VKCLRCSHESERYENIMDLTLEIYGW------------------VESLEDALTQFTSPEDLDGENMYKCARCATYVRARK 672 (783)
Q Consensus 611 i~C~~C~~~s~~~e~f~~LsL~I~~~------------------~~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k 672 (783)
++|..|++++.+.++|+.|+|+||.. ..+|++||+.|+.+|.++++++|+|++|++++.+.|
T Consensus 166 ~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~~~a~K 245 (367)
T 2y6e_A 166 LVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATK 245 (367)
T ss_dssp EECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-CCEEETTTTEEECCEE
T ss_pred EEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhcccccCCCCCCccCCCCCCCceEEE
Confidence 99999999999999999999999853 358999999999999999999999999999999999
Q ss_pred EEeeecCCceEEEEEEeeecCc--ccccceEEecCC-ccCCCccccCCCCCCCcEEEEEEEEEecCCCCCCCCeEEEEEE
Q 003960 673 QLSIHEAPNILTIVLKRFQEGR--YGKINKCITFPE-MLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIK 749 (783)
Q Consensus 673 ~~~i~~lP~iLiIqL~RF~~~~--~~Ki~~~V~fP~-~LDL~~~~~~~~~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk 749 (783)
+..|.++|+||+|||+||.++. ..|++..|.||. .|||.+|+.........|+|+|||+|.|. .++|||+||+|
T Consensus 246 ~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~---~~~GHY~a~~~ 322 (367)
T 2y6e_A 246 KFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYGA---MGVGHYTAYAK 322 (367)
T ss_dssp EEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSSSCCCEEEEEEEEEEECS---SSSCEEEEEEE
T ss_pred EEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccCCCCCCceEEEEEEeecCCC---CCCCeeeEEEE
Confidence 9999999999999999998754 379999999996 79999999877666789999999999996 45999999999
Q ss_pred cC-CCCEEEEcCCeeeeeCCCccCCCCcEEEEEEC
Q 003960 750 DM-QGTWFRIDDTQVHPVPMSQVMSEGAYMLFYMR 783 (783)
Q Consensus 750 ~~-~~~W~~fNDs~Vt~vs~e~v~~~~aYILfY~R 783 (783)
.. +++||+|||+.|+++++++|....||||||+|
T Consensus 323 ~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r 357 (367)
T 2y6e_A 323 NKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQR 357 (367)
T ss_dssp CTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEE
T ss_pred cCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEE
Confidence 86 78999999999999999999999999999987
No 2
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=2.1e-57 Score=496.05 Aligned_cols=305 Identities=30% Similarity=0.504 Sum_probs=265.8
Q ss_pred cCCcccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCccc---CCCCchHHHHHHHHHHHHHh--CCCCCChHHHHHHH
Q 003960 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC---CGKDWCLMCELEQHVMMLRE--SAGPLSPGRILSHM 549 (783)
Q Consensus 475 ~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~~---~~~~~~l~~qL~~L~~~L~s--~~~~isP~~fl~~l 549 (783)
+|++||.|+|||||||||||+|+++|+|+++++...+.... .....++.++|..|+..|+. ....++|..|+..+
T Consensus 7 ~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~p~~~~~~l 86 (348)
T 3nhe_A 7 QGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKTQI 86 (348)
T ss_dssp CSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHTTCCTTCEECCHHHHHHH
T ss_pred CCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccCCCcccHHHHHHHHHHHHHHcCCCCCccCHHHHHHHH
Confidence 78999999999999999999999999999999875443322 23467899999999999984 44679999999999
Q ss_pred HhcccccCCCccccHHHHHHHHHHHHHHHHhhhcCCCCCCCCc------------------cccccccccccceEEEEEE
Q 003960 550 RSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPR------------------LQETTFIQHTFGGRLWSKV 611 (783)
Q Consensus 550 ~~~~~~f~~g~QQDA~EFL~~LLd~L~~e~~~~~~~~~~~~~~------------------~~~~siI~~lF~g~l~~~i 611 (783)
+...+.|..++||||+|||.+||+.|++++............. ....++|.++|+|++.+.+
T Consensus 87 ~~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~ 166 (348)
T 3nhe_A 87 QRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSL 166 (348)
T ss_dssp HHHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHHHCEEEEEEE
T ss_pred HHhhhhhCCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHhhcCCccccccceEEEEEE
Confidence 9999999999999999999999999999874422111100000 1234679999999999999
Q ss_pred EecCCCCccceeeeeeeeeecccccc---CCHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEeeecCCceEEEEEE
Q 003960 612 KCLRCSHESERYENIMDLTLEIYGWV---ESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLK 688 (783)
Q Consensus 612 ~C~~C~~~s~~~e~f~~LsL~I~~~~---~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~~lP~iLiIqL~ 688 (783)
+|..|+..+.+.++|+.|+|+|+... .+|+++|+.|+.+|.++|+++|.|++|+.++.+.|+..|.++|++|+|||+
T Consensus 167 ~C~~C~~~s~~~e~f~~LsL~i~~~~~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL~i~lk 246 (348)
T 3nhe_A 167 TCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLK 246 (348)
T ss_dssp EETTTCCEEEEEEEESSEEECCCSSCSSCEEHHHHHHHHHSCEEECGGGCCEETTTTEECCEEEEEEEEECCSEEEEEEC
T ss_pred EcCCCCCEeeeeccceEEeeeCCCcccCCCCHHHHHHHhcCceEecCCCceECCCCCCcccEEEEEEeecCCceEEEEEE
Confidence 99999999999999999999998632 489999999999999999999999999999999999999999999999999
Q ss_pred eeecCc--ccccceEEecC-CccCCCccccCCCCCCCcEEEEEEEEEecCCCCCCCCeEEEEEEcC-CCCEEEEcCCeee
Q 003960 689 RFQEGR--YGKINKCITFP-EMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM-QGTWFRIDDTQVH 764 (783)
Q Consensus 689 RF~~~~--~~Ki~~~V~fP-~~LDL~~~~~~~~~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~-~~~W~~fNDs~Vt 764 (783)
||.... ..|++..|.|| +.|||.+|+.... ....|+|+|||+|.|. .++|||+||+|.. +++||+|||+.|+
T Consensus 247 Rf~~~~~~~~K~~~~v~fp~~~ldl~~~~~~~~-~~~~Y~L~avv~H~G~---~~~GHY~~~~~~~~~~~W~~~nD~~V~ 322 (348)
T 3nhe_A 247 RFSESRIRTSKLTTFVNFPLRDLDLREFASENT-NHAVYNLYAVSNHSGT---TMGGHYTAYCRSPGTGEWHTFNDSSVT 322 (348)
T ss_dssp CBCCCSSCCCBCCCCEECCSSCEECGGGBCTTC-CCCEEEEEEEEEEEEC---SSCEEEEEEEECTTTCCEEEEETTEEE
T ss_pred cccccCCceeecCcceeccCCcCCHhhhcCCCC-CCCcEEEEEEEEccCC---CCCcccEEEEccCCCCcEEEEeCCCce
Confidence 997643 47999999999 6899999987554 3678999999999995 4589999999985 7899999999999
Q ss_pred eeCCCccCCCCcEEEEEEC
Q 003960 765 PVPMSQVMSEGAYMLFYMR 783 (783)
Q Consensus 765 ~vs~e~v~~~~aYILfY~R 783 (783)
++++++|....||||||+|
T Consensus 323 ~v~~~~v~~~~aY~LfY~r 341 (348)
T 3nhe_A 323 PMSSSQVRTSDAYLLFYEL 341 (348)
T ss_dssp EECGGGTCCTTEEEEEEEE
T ss_pred ECCHHHcCCCCceEEEEEe
Confidence 9999999999999999997
No 3
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=3e-57 Score=506.69 Aligned_cols=306 Identities=29% Similarity=0.482 Sum_probs=265.4
Q ss_pred cCCcccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCcc-----cCCCCchHHHHHHHHHHHHHhCC-CCCChHHHHHH
Q 003960 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSA-----CCGKDWCLMCELEQHVMMLRESA-GPLSPGRILSH 548 (783)
Q Consensus 475 ~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~-----~~~~~~~l~~qL~~L~~~L~s~~-~~isP~~fl~~ 548 (783)
++++||.|+|||||||||||+|+++|+|+++|+...+... ......++..+|..|+..||... ..++|..|+..
T Consensus 60 ~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~i~P~~f~~~ 139 (396)
T 2gfo_A 60 PALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKIT 139 (396)
T ss_dssp TTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEEEECCHHHHHH
T ss_pred CCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCCCceECHHHHHHH
Confidence 7899999999999999999999999999999986543211 11234578899999999999765 46999999999
Q ss_pred HHhcccccCCCccccHHHHHHHHHHHHHHHHhhhcCCCCC----CCC--------------ccccccccccccceEEEEE
Q 003960 549 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESK----VDP--------------RLQETTFIQHTFGGRLWSK 610 (783)
Q Consensus 549 l~~~~~~f~~g~QQDA~EFL~~LLd~L~~e~~~~~~~~~~----~~~--------------~~~~~siI~~lF~g~l~~~ 610 (783)
++...+.|..++||||+|||.+||+.|++++......... .+. .....++|.++|+|++.++
T Consensus 140 l~~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~l~s~ 219 (396)
T 2gfo_A 140 IGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKST 219 (396)
T ss_dssp HHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCEEEEEE
T ss_pred HHHhchhhcCCCCCChHHHHHHHHHHHHHHHhhhccccccccccccccchhhHHHHHHHHhhhccCCccchhhCcEEEEE
Confidence 9999999999999999999999999999986432111000 000 0123578999999999999
Q ss_pred EEecCCCCccceeeeeeeeeeccccc-cCCHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEeeecCCceEEEEEEe
Q 003960 611 VKCLRCSHESERYENIMDLTLEIYGW-VESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKR 689 (783)
Q Consensus 611 i~C~~C~~~s~~~e~f~~LsL~I~~~-~~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~~lP~iLiIqL~R 689 (783)
++|..|+.++.+.++|+.|+|+|+.. ..+|++||+.|+.+|.++|+++|.|++|+.++.+.|+..|.++|+||+|||+|
T Consensus 220 i~C~~C~~~s~~~e~f~~LsL~ip~~~~~sL~~~L~~f~~~E~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkR 299 (396)
T 2gfo_A 220 VQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKR 299 (396)
T ss_dssp EEETTTCCEEEEEEEESSEEECCSCSSEEEHHHHHHHHTSCEEECSTTCEEETTTTEEECEEEEEEEEECCSEEEEEECC
T ss_pred EEeCCCCceecccccceeeeecccccccCCHHHHHHHhCCcccccCCcccccCCcccccceEEEEEEecCCcEEEEEecc
Confidence 99999999999999999999999864 46899999999999999999999999999999999999999999999999999
Q ss_pred eecCc--ccccceEEecC-CccCCCccccCCCCCCCcEEEEEEEEEecCCCCCCCCeEEEEEEcC-CCCEEEEcCCeeee
Q 003960 690 FQEGR--YGKINKCITFP-EMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM-QGTWFRIDDTQVHP 765 (783)
Q Consensus 690 F~~~~--~~Ki~~~V~fP-~~LDL~~~~~~~~~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~-~~~W~~fNDs~Vt~ 765 (783)
|.++. ..|++..|.|| +.|||.+|+.........|+|+|||+|.|. .++|||+||+|+. +++||+|||+.|++
T Consensus 300 F~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~---~~~GHY~a~v~~~~~~~W~~fnD~~V~~ 376 (396)
T 2gfo_A 300 FSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGG---LDGGHYTAYCKNAARQRWFKFDDHEVSD 376 (396)
T ss_dssp EEECSSSEEECCCEEECCSSCBCCGGGBCSCCSSCCCBEEEEEEEEESC---TTTCEEEEEEEETTTTEEEEEETTEEEE
T ss_pred eeccCccceecCceEecchhhccccccccCCCCCCceEEEEEEEEecCC---CCCCceEEEEcCCCCCCEEEEeCCCeEE
Confidence 98654 37999999999 579999999876556789999999999995 5599999999985 68999999999999
Q ss_pred eCCCccCCCCcEEEEEEC
Q 003960 766 VPMSQVMSEGAYMLFYMR 783 (783)
Q Consensus 766 vs~e~v~~~~aYILfY~R 783 (783)
+++++|....||||||+|
T Consensus 377 v~~~~v~~~~aYiLfY~r 394 (396)
T 2gfo_A 377 ISVSSVKSSAAYILFYTS 394 (396)
T ss_dssp CCHHHHSCTTEEEEEEEC
T ss_pred CCHHHcCCCCceEEEEEE
Confidence 999999999999999997
No 4
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=2.5e-57 Score=496.77 Aligned_cols=304 Identities=32% Similarity=0.511 Sum_probs=257.2
Q ss_pred cCCcccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCccc--CCCCchHHHHHHHHHHHHHhCC--CCCChHHHHHHHH
Q 003960 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC--CGKDWCLMCELEQHVMMLRESA--GPLSPGRILSHMR 550 (783)
Q Consensus 475 ~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~~--~~~~~~l~~qL~~L~~~L~s~~--~~isP~~fl~~l~ 550 (783)
+|++||.|+|||||||||||+|+++|+|+++++...+.... .....++.++|+.|+..|+... ..++|..|+..++
T Consensus 1 TG~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~v~p~~~~~~l~ 80 (355)
T 3i3t_A 1 SGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAVFQ 80 (355)
T ss_dssp --CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC------CHHHHHHHHHHHHTSSCSSCCCBCCHHHHHHHH
T ss_pred CCCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCCCCchhHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Confidence 47899999999999999999999999999999875432221 1234579999999999999754 5799999999999
Q ss_pred hcccccCCCccccHHHHHHHHHHHHHHHHhhhcCCCCCCC------------------C---------------cccccc
Q 003960 551 SISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVD------------------P---------------RLQETT 597 (783)
Q Consensus 551 ~~~~~f~~g~QQDA~EFL~~LLd~L~~e~~~~~~~~~~~~------------------~---------------~~~~~s 597 (783)
...+.|..++||||+|||.+||+.|++++........... + .....+
T Consensus 81 ~~~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 160 (355)
T 3i3t_A 81 KYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDS 160 (355)
T ss_dssp HHCGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHHCCS
T ss_pred HhChhhCCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHHHHHHhhhccCC
Confidence 9999999999999999999999999998643211100000 0 011346
Q ss_pred ccccccceEEEEEEEecCCCCccceeeeeeeeeeccccc-----cCCHHHHHhhcCCCccCCCCCccccCccCcceeeEE
Q 003960 598 FIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGW-----VESLEDALTQFTSPEDLDGENMYKCARCATYVRARK 672 (783)
Q Consensus 598 iI~~lF~g~l~~~i~C~~C~~~s~~~e~f~~LsL~I~~~-----~~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k 672 (783)
+|.++|+|++...++|..|+..+.+.++|+.|+|+|+.. ..+|+++|+.|+.+|.++++|+|.|++|++++.+.|
T Consensus 161 ~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~~sl~~~L~~~~~~e~l~~~n~~~C~~C~~~~~a~k 240 (355)
T 3i3t_A 161 KIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTK 240 (355)
T ss_dssp HHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC-------CBHHHHHHHHHCCEEECGGGCCCCSSSCCCCCEEE
T ss_pred cccccccEEEEeeEEeCCCCCCceeeccceeecccCCccccccCccCHHHHHHHhCCccccCCCCCeeCCCCCCccceEE
Confidence 799999999999999999999999999999999999863 359999999999999999999999999999999999
Q ss_pred EEeeecCCceEEEEEEeeecCc--ccccceEEecC-CccCCCccccCCCCCCCcEEEEEEEEEecCCCCCCCCeEEEEEE
Q 003960 673 QLSIHEAPNILTIVLKRFQEGR--YGKINKCITFP-EMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIK 749 (783)
Q Consensus 673 ~~~i~~lP~iLiIqL~RF~~~~--~~Ki~~~V~fP-~~LDL~~~~~~~~~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk 749 (783)
+..|.++|++|+|||+||.... ..|++..|.|| +.|||.+|+.... ....|+|+|||+|.|. .++|||+||+|
T Consensus 241 ~~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~~~~~~~-~~~~Y~L~avv~H~G~---~~~GHY~~~~~ 316 (355)
T 3i3t_A 241 KLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKA-GSPVYQLYALCNHSGS---VHYGHYTALCR 316 (355)
T ss_dssp EEEEEECCSEEEEEECCEECCSSCCEECCCCCBCCSSCEECGGGBC-----CCEEEEEEEEEEEEE---TTEEEEEEEEE
T ss_pred EEEcccCChheEEEhhheecCCCCceECCcceeCCccccCchhhccCCC-CCcceEEEEEEEecCC---CCCCeEEEEEE
Confidence 9999999999999999998643 47999999999 6699999987543 4678999999999995 55999999999
Q ss_pred cCCCCEEEEcCCeeeeeCCCccCCCCcEEEEEEC
Q 003960 750 DMQGTWFRIDDTQVHPVPMSQVMSEGAYMLFYMR 783 (783)
Q Consensus 750 ~~~~~W~~fNDs~Vt~vs~e~v~~~~aYILfY~R 783 (783)
. +++||+|||+.|+++++++|....||||||+|
T Consensus 317 ~-~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r 349 (355)
T 3i3t_A 317 C-QTGWHVYNDSRVSPVSENQVASSEGYVLFYQL 349 (355)
T ss_dssp E-TTEEEEEETTEEEEECHHHHHTSCCSEEEEEE
T ss_pred c-CCeEEEEcCCCcEECCHHHcCCCCcEEEEEEe
Confidence 8 67899999999999999999999999999997
No 5
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=6.8e-56 Score=535.91 Aligned_cols=337 Identities=22% Similarity=0.306 Sum_probs=263.7
Q ss_pred CCCcccccccccccCcccccccccchhhhhhhhhcCc-eeecchhhhhhccccccccCcCCcccccCCCcccHHHHHHHH
Q 003960 418 GSNVVSKMGIMKMMGLRKSTKLRQDSSELWHDQHRKL-KMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCL 496 (783)
Q Consensus 418 ~~~~L~~~Gi~k~~~l~~~~kt~~s~~el~~d~n~~~-~~~~~~e~~~~~~~~~~~~~~~~~GL~NlGNTCYmNSVLQ~L 496 (783)
...||++||| ++.+..|+++++.++..+.|.++ .|....+....+ ...++ +|++||.|+|||||||||||+|
T Consensus 291 l~~~l~~~gi----~~~~~~kt~k~~~el~~~~n~~~g~~~~~~~~g~~l--~p~~~-~G~~GL~NlGNTCYmNSvLQ~L 363 (854)
T 3ihp_A 291 LAEHLSHFGI----DMLKMQKTDKTMTELEIDMNQRIGEWELIQESGVPL--KPLFG-PGYTGIRNLGNSCYLNSVVQVL 363 (854)
T ss_dssp HHHHHHHTTC----CC-------------------------------------CCCS-TTCCCBCCCSSCHHHHHHHHHH
T ss_pred HHHHHHHhCc----ccccccccchhhhhhhhhhccccchhhhhcccCccc--ccccC-CCccceEecCCceehhHHHHHH
Confidence 3568999999 99999999999999988888887 666554443222 12334 8899999999999999999999
Q ss_pred hcCHHHHHHHHhcccC---cccCCCCchHHHHHHHHHHHHHhC---------------------CCCCChHHHHHHHHhc
Q 003960 497 TCTKPLVIYLLRRSHS---SACCGKDWCLMCELEQHVMMLRES---------------------AGPLSPGRILSHMRSI 552 (783)
Q Consensus 497 ~~ip~fr~~ll~~~~~---~~~~~~~~~l~~qL~~L~~~L~s~---------------------~~~isP~~fl~~l~~~ 552 (783)
+++|+|+++|+..... .....+..++.++|++|+..|++. ...++|..|+..++..
T Consensus 364 ~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~~~~~~~~~~~~~~isP~~f~~~l~~~ 443 (854)
T 3ihp_A 364 FSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGERVPEQKEVQDGIAPRMFKALIGKG 443 (854)
T ss_dssp TTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHHHHHHHHHHSCC---------------------CCBCCHHHHHHHTTT
T ss_pred hCcHHHHHHHHhhhhhhhccccCCccccHHHHHHHHHHHHhccccccccccccccccccccccCCCccChHHHHHHHhhh
Confidence 9999999999743221 123345678999999999999853 3479999999999999
Q ss_pred ccccCCCccccHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCccceeeeeeeeeec
Q 003960 553 SCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLE 632 (783)
Q Consensus 553 ~~~f~~g~QQDA~EFL~~LLd~L~~e~~~~~~~~~~~~~~~~~~siI~~lF~g~l~~~i~C~~C~~~s~~~e~f~~LsL~ 632 (783)
++.|..++||||+|||.+||+.|++++. ..++|.++|+|++.++++|..|++++.+.++|+.|+|+
T Consensus 444 ~~~F~~~~QQDA~EFl~~LLd~L~~el~--------------~~s~i~~lF~G~l~s~i~C~~C~~vs~t~e~F~~LsL~ 509 (854)
T 3ihp_A 444 HPEFSTNRQQDAQEFFLHLINMVERNCR--------------SSENPNEVFRFLVEEKIKCLATEKVKYTQRVDYIMQLP 509 (854)
T ss_dssp CTTTTSSSCCBHHHHHHHHHHHHHHTCT--------------TSCCGGGGTCEEEEEEEEETTTTEEEEEEEEESEEEEC
T ss_pred ccccccccccCHHHHHHHHHHHHHHHhc--------------ccCCchhhcCceEEEEEEecCCCCEeEEeeeceEEEee
Confidence 9999999999999999999999998542 13568899999999999999999999999999999999
Q ss_pred ccccc-------------------------------CCHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEeeecCCc
Q 003960 633 IYGWV-------------------------------ESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPN 681 (783)
Q Consensus 633 I~~~~-------------------------------~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~~lP~ 681 (783)
|+... .+|++||+.|+.+|.+++ |+|++|+.++.+.|+..|.++|+
T Consensus 510 Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~sL~dcL~~f~~~E~Le~---y~C~~C~~k~~a~K~~~i~~lP~ 586 (854)
T 3ihp_A 510 VPMDAALNKEELLEYEEKKRQAEEEKMALPELVRAQVPFSSCLEAYGAPEQVDD---FWSTALQAKSVAVKTTRFASFPD 586 (854)
T ss_dssp CCGGGCTTHHHHHHHHHHHHHHHHTTCCCCCCCCEECCHHHHHHHHHSCEEEEE---EEETTTTEEEEEEEEEEESSCCS
T ss_pred CCccccccccchhhhcccccccccccccccccccCCCCHHHHHHHhcCceEeee---eeccccCCcceeeEEEEeeeCCc
Confidence 98531 489999999999999997 99999999999999999999999
Q ss_pred eEEEEEEeeecC---cccccceEEecCCccCCCccccCCC----------------------------------------
Q 003960 682 ILTIVLKRFQEG---RYGKINKCITFPEMLDMMPFMTGTG---------------------------------------- 718 (783)
Q Consensus 682 iLiIqL~RF~~~---~~~Ki~~~V~fP~~LDL~~~~~~~~---------------------------------------- 718 (783)
||+|||+||.++ ...|++..|.||..|||.+|+..+.
T Consensus 587 vLiihLkRF~~d~~~~~~Ki~~~V~FP~~LDl~~y~~~~~q~~E~~lp~~~~~~~~~~~~~~~~~d~~~l~~L~~mGf~~ 666 (854)
T 3ihp_A 587 YLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQPGEEELPDIAPPLVTPDEPKAPMLDESVIIQLVEMGFPM 666 (854)
T ss_dssp EEEEEECCEEECGGGCEEECCEECCCCSEEECGGGBCCCSCTTCCBCCCC----------------CHHHHHHHHHTCCH
T ss_pred eEEEEeehheecCCCceEECCeEEecCCcEehHHhccCCCCCCceecccccccccccccccccCcCHHHHHHHHhcCCCH
Confidence 999999999873 3379999999999999999865210
Q ss_pred --------------------------------------------------------------------------------
Q 003960 719 -------------------------------------------------------------------------------- 718 (783)
Q Consensus 719 -------------------------------------------------------------------------------- 718 (783)
T Consensus 667 ~~~~kal~~t~n~~~e~a~~wl~~hmdd~di~~p~~~~~~~~~~s~~~~~~~~~~e~i~~l~~mGf~~~~a~~aL~~t~~ 746 (854)
T 3ihp_A 667 DACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSGPGSTSAAADPPPEDCVTTIVSMGFSRDQALKALRATNN 746 (854)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHHHHHTTSCGGGSCCCCC--------------CCHHHHHHHHTTTCCHHHHHHHHHHTTT
T ss_pred HHHHHHHhhcCCCchHHHhHHHhhccCcccccccccccccccccccccccCCCCHHHHHHHHHcCCCHHHHHHHHHhhcC
Confidence
Q ss_pred ---------------------------------------------CCCCcEEEEEEEEEecCCCCCCCCeEEEEEEcCCC
Q 003960 719 ---------------------------------------------DTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQG 753 (783)
Q Consensus 719 ---------------------------------------------~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~~~ 753 (783)
+.+..|+|+|||+|.|. +.++||||||||+ ++
T Consensus 747 ~~eraidwlfs~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~--~~~~GHY~~~~~~-~~ 823 (854)
T 3ihp_A 747 SLERAVDWIFSHIDDLDAEAAMDISEGRSAADSISESVPVGPKVRDGPGKYQLFAFISHMGT--STMCGHYVCHIKK-EG 823 (854)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCC------------------CCCCCCCSEEEEEEEEEEESS--CSSCCEEEEEEEE-TT
T ss_pred cHHHHHHhhhcCcccccccccccccccccccccccccccccCCCCCCCceEEEEEEEEeecC--CCCCcCeEEEEEe-CC
Confidence 01236999999999998 7889999999998 89
Q ss_pred CEEEEcCCeeeeeCCCccCCCCcEEEEEEC
Q 003960 754 TWFRIDDTQVHPVPMSQVMSEGAYMLFYMR 783 (783)
Q Consensus 754 ~W~~fNDs~Vt~vs~e~v~~~~aYILfY~R 783 (783)
+||+|||++|+++ +++....||||||+|
T Consensus 824 ~W~~~nD~~V~~~--~~~~~~~aYilfY~R 851 (854)
T 3ihp_A 824 RWVIYNDQKVCAS--EKPPKDLGYIYFYQR 851 (854)
T ss_dssp EEEEEETTEEEEC--SSCCTTSCSEEEEEE
T ss_pred EEEEEECCeeEEc--cccCCCcceEEEEEe
Confidence 9999999999998 456778999999998
No 6
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=7.3e-56 Score=495.24 Aligned_cols=302 Identities=26% Similarity=0.336 Sum_probs=255.1
Q ss_pred cCCcccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCc--c-cCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHh
Q 003960 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSS--A-CCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRS 551 (783)
Q Consensus 475 ~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~--~-~~~~~~~l~~qL~~L~~~L~s~~~~isP~~fl~~l~~ 551 (783)
..++||.|+|||||||||||+|+++|+|+++|+...... . ......+++++|+.||..|+.....++|..|+..++.
T Consensus 12 ~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~v~P~~~~~~l~~ 91 (404)
T 2ayn_A 12 ELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSIPPIILLQFLHM 91 (404)
T ss_dssp CCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHHCSEECCHHHHHHHHH
T ss_pred CCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCCCCcccHHHHHHHHHHHHHhcCCCcCChHHHHHHHHH
Confidence 568999999999999999999999999999998754431 1 1123568999999999999987789999999999999
Q ss_pred cccccC------CCccccHHHHHHHHHHHHHHHHhhhcCCCCC--------CCCccccccccccccceEEEEEEEecCCC
Q 003960 552 ISCQIG------DGSQEDAHEFLRLLVASMQSICLERHGGESK--------VDPRLQETTFIQHTFGGRLWSKVKCLRCS 617 (783)
Q Consensus 552 ~~~~f~------~g~QQDA~EFL~~LLd~L~~e~~~~~~~~~~--------~~~~~~~~siI~~lF~g~l~~~i~C~~C~ 617 (783)
..+.|. .+.||||+|||.+||+.|++++......... ........++|.++|+|++.+.++|..|+
T Consensus 92 ~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~i~~~F~G~l~s~i~C~~C~ 171 (404)
T 2ayn_A 92 AFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCTESE 171 (404)
T ss_dssp HCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC------------------CCHHHHHTCEEEEEEEEESSSC
T ss_pred hCchhhccccCCCccccCHHHHHHHHHHHHHHHhccccCCcccccchhhhhhhhccccCchhhhhccEEEEEEEEecCCC
Confidence 999887 4899999999999999999865332110000 00002345789999999999999999999
Q ss_pred Ccc--ceeeeeeeeeeccccccCCHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEeeecCCceEEEEEEeeecC--
Q 003960 618 HES--ERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG-- 693 (783)
Q Consensus 618 ~~s--~~~e~f~~LsL~I~~~~~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~~lP~iLiIqL~RF~~~-- 693 (783)
.++ .+.++|+.|+|+|+....+|+++|+.++. |.++ |.|+.|++...+.|+..|.++|+||+|||+||.++
T Consensus 172 ~~s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~-e~l~----~~c~~c~~~~~~~k~~~i~~lP~vL~i~LkRF~~~~~ 246 (404)
T 2ayn_A 172 EEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQ-EEIT----KQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEK 246 (404)
T ss_dssp CCCCBCCEEEESSEEEECSSSCCBHHHHHHHTTE-ECCC----CEETTTTEECCEEEEEEEEECCSSEEEEEECBCCCCS
T ss_pred CccCceeeccCceEEeecCCCcccHHHHHHHhcc-ccee----ecchhhCCccceeeeeeHhhCCCceEEEEEEEEEecc
Confidence 994 79999999999999877899999999986 4454 89999999999999999999999999999999864
Q ss_pred --cccccceEEecCCccCCCccccCC-------------------------------------------------CCCCC
Q 003960 694 --RYGKINKCITFPEMLDMMPFMTGT-------------------------------------------------GDTPP 722 (783)
Q Consensus 694 --~~~Ki~~~V~fP~~LDL~~~~~~~-------------------------------------------------~~~~~ 722 (783)
...|++..|.||..|||.+|+... .....
T Consensus 247 ~~~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 326 (404)
T 2ayn_A 247 ESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCG 326 (404)
T ss_dssp SSSCCBCCCCCBCCSEEECGGGBCHHHHHHTTTTTGGGTCTTC----------------------CCCCCSCTTTTCCCS
T ss_pred cCceeccCceeccCceeEHhHhcChhhhhhcchhhhHHhhhhcccchhhhhhccccccccccccccccccccccCcCCCc
Confidence 348999999999999999997631 12357
Q ss_pred cEEEEEEEEEecCCCCCCCCeEEEEEEcCCCCEEEEcCCeeeeeCCCccCCCC-------cEEEEEEC
Q 003960 723 LYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQVMSEG-------AYMLFYMR 783 (783)
Q Consensus 723 ~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~~~~W~~fNDs~Vt~vs~e~v~~~~-------aYILfY~R 783 (783)
.|+|+|||+|.|. +.++|||+||||..+++||+|||+.|+++++++|.... ||||||+|
T Consensus 327 ~Y~L~avv~H~G~--s~~~GHY~a~v~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r 392 (404)
T 2ayn_A 327 YYDLQAVLTHQGR--SSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGP 392 (404)
T ss_dssp EEEEEEEEEEESS--STTSSEEEEEEEEETTEEEEEBTTBCCCBCHHHHGGGGSSSSSCEEEEEEEEC
T ss_pred eEEEEEEEEecCC--CCCCCCeEEEEECCCCeEEEeecccceecCHHHHHhhhCCCCCceEEEEEEEe
Confidence 8999999999997 67799999999987899999999999999999888655 99999997
No 7
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=4.8e-55 Score=481.54 Aligned_cols=289 Identities=27% Similarity=0.432 Sum_probs=251.7
Q ss_pred cCCcccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCcccCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHhccc
Q 003960 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISC 554 (783)
Q Consensus 475 ~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~~~~~~~~l~~qL~~L~~~L~s~~~~isP~~fl~~l~~~~~ 554 (783)
+|++||.|+|||||||||||+|+++|+|+++++..... ......++.++|+.||..|+.+..++.|..|+..++ .+
T Consensus 4 ~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~--~~~~~~~~~~~l~~lf~~l~~~~~~~~~~~l~~~~~--~~ 79 (353)
T 1nb8_A 4 TGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE--GDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFG--WE 79 (353)
T ss_dssp SSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCT--TSCTTTCHHHHHHHHHHHHHHCSSCBCCHHHHHHHT--CC
T ss_pred CCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCC--CCcccccHHHHHHHHHHHHhhcCCCCCCHHHHhhcC--CC
Confidence 78999999999999999999999999999999754221 123456799999999999999888999999988774 36
Q ss_pred ccCCCccccHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCccceeeeeeeeeeccc
Q 003960 555 QIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIY 634 (783)
Q Consensus 555 ~f~~g~QQDA~EFL~~LLd~L~~e~~~~~~~~~~~~~~~~~~siI~~lF~g~l~~~i~C~~C~~~s~~~e~f~~LsL~I~ 634 (783)
.|..+.||||+|||.+||+.|++++... ...++|.++|+|++.+.++|..|+..+.+.++|+.|+|+|+
T Consensus 80 ~~~~~~QqDA~EFl~~LLd~L~~~~~~~-----------~~~s~i~~~F~g~~~~~i~C~~C~~~s~~~e~f~~LsL~i~ 148 (353)
T 1nb8_A 80 TLDSFMQHDVQELCRVLLDNVENKMKGT-----------CVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIK 148 (353)
T ss_dssp BTTTTTTSCHHHHHHHHHHHHHHHTTTS-----------TTTTHHHHHHCEEEEEEEEESSSCCEEEEEEEESCEEECCT
T ss_pred CCCcccchhHHHHHHHHHHHHHHHhcCC-----------CccchhhhhceeEEEEEEEeccCCCeeceeeeeEEEEEEEC
Confidence 7889999999999999999999865321 13467999999999999999999999999999999999998
Q ss_pred cccCCHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEeeecCCceEEEEEEeeecC----cccccceEEecCCccCC
Q 003960 635 GWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG----RYGKINKCITFPEMLDM 710 (783)
Q Consensus 635 ~~~~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~~lP~iLiIqL~RF~~~----~~~Ki~~~V~fP~~LDL 710 (783)
+ ..+|.++|..|+.+|.++|+++|.|+.|+ .+.+.++..|.++|+||+|||+||.++ ...|++..|.||..|||
T Consensus 149 ~-~~~l~~~L~~~~~~E~l~~~~~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp~~Ldl 226 (353)
T 1nb8_A 149 G-KKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPL 226 (353)
T ss_dssp T-CSBHHHHHHHHTCCEEECTTTCEECGGGC-EECEEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCCSEEEC
T ss_pred C-CcchHHHHHHhhCccccCCCccccCCcCc-cEeeEEEEEhhcCCCceEEEEecEEEecccCceEecCcEEECCCeeeh
Confidence 6 57899999999999999999999999996 577899999999999999999999764 34799999999999999
Q ss_pred CccccCCC-CCCCcEEEEEEEEEecCCCCCCCCeEEEEEEc-CCCCEEEEcCCeeeeeCCCccCC---------------
Q 003960 711 MPFMTGTG-DTPPLYMLYSVVVHLDTQNASFSGHYVSYIKD-MQGTWFRIDDTQVHPVPMSQVMS--------------- 773 (783)
Q Consensus 711 ~~~~~~~~-~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~-~~~~W~~fNDs~Vt~vs~e~v~~--------------- 773 (783)
.+|+.... ..+..|+|+|||+|.|. .++|||+||+|. .+++||+|||+.|+++++++|..
T Consensus 227 ~~~~~~~~~~~~~~Y~L~avv~H~G~---~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~gg~~~~~~~~~~ 303 (353)
T 1nb8_A 227 DEFLQKTDPKDPANYILHAVLVHSGD---NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHC 303 (353)
T ss_dssp GGGBSSCCTTSCCEEEEEEEEEEESS---TTCCCEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCC-------CC
T ss_pred hhhhcccCCCCCceEEEEEEEEEeCC---CCCcEEEEEEecCCCCCEEEEECcceEECCHHHHHHHhcCCCccccccCcC
Confidence 99987543 34678999999999996 459999999995 47899999999999999887753
Q ss_pred CCcEEEEEEC
Q 003960 774 EGAYMLFYMR 783 (783)
Q Consensus 774 ~~aYILfY~R 783 (783)
..||||||+|
T Consensus 304 ~~aYiLfY~r 313 (353)
T 1nb8_A 304 TNAYMLVYIR 313 (353)
T ss_dssp EEEEEEEEEE
T ss_pred CeEEEEEEEE
Confidence 5699999987
No 8
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=100.00 E-value=7.9e-55 Score=489.41 Aligned_cols=286 Identities=24% Similarity=0.329 Sum_probs=244.3
Q ss_pred cCCcccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCcccCCC-------CchHHHHHHHHHHHHHhCC-CCCChHHHH
Q 003960 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGK-------DWCLMCELEQHVMMLRESA-GPLSPGRIL 546 (783)
Q Consensus 475 ~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~~~~~-------~~~l~~qL~~L~~~L~s~~-~~isP~~fl 546 (783)
.+++||.|+|||||||||||+|+++|+|+++|+........... ..+++++|+.||..|+.+. ..++|..|+
T Consensus 22 ~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~v~p~~~~ 101 (415)
T 1vjv_A 22 QLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLPVVLL 101 (415)
T ss_dssp CCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECCHHHH
T ss_pred CCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCcccccccchhHHHHHHHHHHHHHhcCCCCccCHHHHH
Confidence 67899999999999999999999999999999875544332222 4589999999999999876 789999999
Q ss_pred HHHHhcccccC-------CCccccHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCc
Q 003960 547 SHMRSISCQIG-------DGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHE 619 (783)
Q Consensus 547 ~~l~~~~~~f~-------~g~QQDA~EFL~~LLd~L~~e~~~~~~~~~~~~~~~~~~siI~~lF~g~l~~~i~C~~C~~~ 619 (783)
..++...+.|. .+.||||+|||.+||+.|++++.. ++|.++|+ ++.+.++|..|+..
T Consensus 102 ~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~---------------~~i~~~F~-~~~~~~~C~~C~~~ 165 (415)
T 1vjv_A 102 NTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD---------------KFSEDFRI-QFKTTIKDTANDND 165 (415)
T ss_dssp HHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH---------------HHHTTTCE-EEEEEEEETTEEEE
T ss_pred HHHHHhCchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc---------------chHHHHHH-hheEEEEECCCCCC
Confidence 99999999998 789999999999999999987632 57899999 99999999999998
Q ss_pred c--ceeeeeeeeeeccccccCCHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEeeecCCceEEEEEEeeecCc---
Q 003960 620 S--ERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGR--- 694 (783)
Q Consensus 620 s--~~~e~f~~LsL~I~~~~~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~~lP~iLiIqL~RF~~~~--- 694 (783)
+ .+.++|+.|+|+|+....+|+++|..|+. +.++ |.|+.|++...+.|+..|.++|+||+|||+||.++.
T Consensus 166 s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~-e~i~----~~c~~c~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~ 240 (415)
T 1vjv_A 166 ITVKENESDSKLQCHISGTTNFMRNGLLEGLN-EKIE----KRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTN 240 (415)
T ss_dssp EEEECCCEESCEEECCCTTCCBHHHHHHHHHE-EC-------------CCCCEEEEEEEEECBSEEEEEECCEEEETTTT
T ss_pred ccccccccceeeeeccccccchHHHHHHHHhh-hhhh----hcccccCCcccEEEEEEcccCCCeeEEEEEEEEEeCCCC
Confidence 6 58999999999999877799999999987 3444 899999999999999999999999999999998643
Q ss_pred -ccccceEEecCCccCCCccccCC--------------------------------------------------------
Q 003960 695 -YGKINKCITFPEMLDMMPFMTGT-------------------------------------------------------- 717 (783)
Q Consensus 695 -~~Ki~~~V~fP~~LDL~~~~~~~-------------------------------------------------------- 717 (783)
..|++..|.||..|||.+|+...
T Consensus 241 ~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 320 (415)
T 1vjv_A 241 KKSKILRKVVFPFQLDVADMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESE 320 (415)
T ss_dssp EEEECCCCCBCCSEEECGGGBCHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHHH
T ss_pred cchhhcCccCCCcEeEhHHhcChhhhhhhhhhHHHHHHHhhhhhhhhhhhhhccccccccccccccchhhhhchhhHHhh
Confidence 38999999999999999987531
Q ss_pred -------------------CCCCCcEEEEEEEEEecCCCCCCCCeEEEEEEc--CCCCEEEEcCCeeeeeCCCccCCCC-
Q 003960 718 -------------------GDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKD--MQGTWFRIDDTQVHPVPMSQVMSEG- 775 (783)
Q Consensus 718 -------------------~~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~--~~~~W~~fNDs~Vt~vs~e~v~~~~- 775 (783)
......|+|+|||+|.|. ++++|||+||||. .+++||+|||+.|+++++++|....
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~--s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~~~~v~~~~~ 398 (415)
T 1vjv_A 321 KDQWLEEYKKHFPPNLEKGENPSCVYNLIGVITHQGA--NSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAG 398 (415)
T ss_dssp HHHHHHHHHTTSCTTCCTTBCSSSEEEEEEEEEEESS--STTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGGC
T ss_pred hhhhhhhcccccccccccccCCCceEEEEEEEEecCC--CCCCCCEEEEEeCCCCCCcEEEeECCcCeEcCHHHHhhhcC
Confidence 123478999999999996 5779999999998 5899999999999999999887754
Q ss_pred ------cEEEEEEC
Q 003960 776 ------AYMLFYMR 783 (783)
Q Consensus 776 ------aYILfY~R 783 (783)
||||||+|
T Consensus 399 g~~~~~aYiLfY~r 412 (415)
T 1vjv_A 399 GGESDSALILMYKG 412 (415)
T ss_dssp CTTSCEEEEEEEEE
T ss_pred CCCcceEEEEEEEe
Confidence 99999997
No 9
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=1e-53 Score=488.67 Aligned_cols=304 Identities=28% Similarity=0.525 Sum_probs=258.6
Q ss_pred cCCcccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCccc--CCCCchHHHHHHHHHHHHHhCC----------CCCCh
Q 003960 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC--CGKDWCLMCELEQHVMMLRESA----------GPLSP 542 (783)
Q Consensus 475 ~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~~--~~~~~~l~~qL~~L~~~L~s~~----------~~isP 542 (783)
+|++||.|+|||||||||||+|+++|+|+++++...+...+ ..+..++.++|..++..|+... ..+.|
T Consensus 139 ~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~ 218 (476)
T 3mhs_A 139 DGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQASSSSTSTNRQ 218 (476)
T ss_dssp TCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCTTTCHHHHHHHHHHHHHSCCCC--------CCCSC
T ss_pred CCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCCCcccchHHHHHHHHHHHhhcccccccccccccccCc
Confidence 78999999999999999999999999999999865443222 2356789999999999998632 24566
Q ss_pred HHHHHHH---HhcccccCCCccccHHHHHHHHHHHHHHHHhhhcCCCC--CCCCccccccccccccceEEEEEEEecCCC
Q 003960 543 GRILSHM---RSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGES--KVDPRLQETTFIQHTFGGRLWSKVKCLRCS 617 (783)
Q Consensus 543 ~~fl~~l---~~~~~~f~~g~QQDA~EFL~~LLd~L~~e~~~~~~~~~--~~~~~~~~~siI~~lF~g~l~~~i~C~~C~ 617 (783)
..++..+ ++..+.|.+++||||+|||.+||+.|++++........ .........++|.++|+|++.++++|..|+
T Consensus 219 ~~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~G~l~~~~~C~~C~ 298 (476)
T 3mhs_A 219 TGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQ 298 (476)
T ss_dssp HHHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC-------CCCSCCSHHHHHSCEEEEEEEECTTTC
T ss_pred chHHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCcceeecceEEEEEEEECCCC
Confidence 6655554 48889999999999999999999999998765432211 111122356789999999999999999999
Q ss_pred Cccc-eeeeeeeeeeccccccCCHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEeeecCCceEEEEEEeeecC---
Q 003960 618 HESE-RYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG--- 693 (783)
Q Consensus 618 ~~s~-~~e~f~~LsL~I~~~~~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~~lP~iLiIqL~RF~~~--- 693 (783)
.++. +.++|+.|+|+|++ ..+|+++|+.|+.+|.+++.+ |.|++|+.++.+.|+..|.++|+||+|||+||...
T Consensus 299 ~~s~~~~e~f~~LsL~i~~-~~sl~~~L~~~~~~E~l~~~~-~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~ 376 (476)
T 3mhs_A 299 NNSKTTIDPFLDLSLDIKD-KKKLYECLDSFHKKEQLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNG 376 (476)
T ss_dssp CCCEEEEEEESCEEECCTT-CCBHHHHHHHHHCCEECSSCC-CEETTTTEECCCEEEEEEEEBCSEEEEEECCEEECTTS
T ss_pred CeeCCcccchhhhccchhh-hhHHHHHHHHhcChhhccCCC-CcCCccCCcccEEEEEEcccCCcceEEEeeeccccCCC
Confidence 9964 59999999999986 579999999999999999755 99999999999999999999999999999999843
Q ss_pred cccccceEEecCCccCCCccccCCCC---------CCCcEEEEEEEEEecCCCCCCCCeEEEEEEcCCCCEEEEcCCeee
Q 003960 694 RYGKINKCITFPEMLDMMPFMTGTGD---------TPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVH 764 (783)
Q Consensus 694 ~~~Ki~~~V~fP~~LDL~~~~~~~~~---------~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~~~~W~~fNDs~Vt 764 (783)
...|++..|.||..|||.+|+..... ....|+|+|||+|.|. .++|||++|+|..+++||+|||+.|+
T Consensus 377 ~~~K~~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avv~H~G~---~~~GHY~a~vr~~~~~W~~fnD~~V~ 453 (476)
T 3mhs_A 377 SNRKLDDFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGT---VNEGHYIAFCKISGGQWFKFNDSMVS 453 (476)
T ss_dssp CEEECCCCCBCCSEEECGGGBSCCBCCC--CCCBCCCEEEEEEEEEEEEEC---SSSEEEEEEEECTTSCEEEEETTEEE
T ss_pred CeEECCEEEcCCCeeechhhcCcccccccccccCCCCCcEEEEEEEEeCCC---CCCCceEEEEECCCCcEEEEeCCceE
Confidence 35799999999999999999875432 3567999999999995 55999999999878999999999999
Q ss_pred eeCCCccCCCCcEEEEEEC
Q 003960 765 PVPMSQVMSEGAYMLFYMR 783 (783)
Q Consensus 765 ~vs~e~v~~~~aYILfY~R 783 (783)
++++++|....||||||+|
T Consensus 454 ~v~~~~v~~~~aYiLfY~r 472 (476)
T 3mhs_A 454 SISQEEVLKEQAYLLFYTI 472 (476)
T ss_dssp EECHHHHTTSCEEEEEEEE
T ss_pred ECCHHHhccCCcEEEEEEE
Confidence 9999999999999999986
No 10
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=3.5e-52 Score=481.56 Aligned_cols=290 Identities=27% Similarity=0.425 Sum_probs=251.6
Q ss_pred CcCCcccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCcccCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHhcc
Q 003960 474 LLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSIS 553 (783)
Q Consensus 474 ~~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~~~~~~~~l~~qL~~L~~~L~s~~~~isP~~fl~~l~~~~ 553 (783)
.++++||.|+||||||||+||+|+++|+|+++++.... .......++.++|+.||..|+.+..++.|..|+..++ .
T Consensus 172 ~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~--~~~~~~~~~~~~l~~lf~~l~~~~~~~~~~~l~~~~~--~ 247 (522)
T 2f1z_A 172 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPT--EGDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFG--W 247 (522)
T ss_dssp TTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCC--CSSCTTTCHHHHHHHHHHHHHHCSSCBCCTTHHHHTC--C
T ss_pred cCCccceecCcccHHHHHHHHHHhccHHHHHHHhhccc--cCCcccchHHHHHHHHHHHHhcCCCccCcHHHHhhcC--C
Confidence 38899999999999999999999999999999975422 1223456799999999999999888999999887663 3
Q ss_pred cccCCCccccHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCccceeeeeeeeeecc
Q 003960 554 CQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEI 633 (783)
Q Consensus 554 ~~f~~g~QQDA~EFL~~LLd~L~~e~~~~~~~~~~~~~~~~~~siI~~lF~g~l~~~i~C~~C~~~s~~~e~f~~LsL~I 633 (783)
+.|..+.||||+|||.+||+.|++++... ...++|.++|+|++.+.++|..|+..+.+.++|+.|+|+|
T Consensus 248 ~~~~~~~QqDa~Efl~~LLd~L~~~l~~~-----------~~~s~i~~lF~G~~~s~i~C~~C~~~s~~~e~f~~LsL~i 316 (522)
T 2f1z_A 248 ETLDSFMQHDVQELCRVLLDNVENKMKGT-----------CVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSI 316 (522)
T ss_dssp CTTTSSTTSCHHHHHHHHHHHHHHHHTTS-----------TTTTHHHHHHCEEEEEEECCSSSCCCCCEEEEESCEEECC
T ss_pred ccCCCcccccHHHHHHHHHHHHHhhccCC-----------ccccchhhheeEEEEEEEEcCCCCceeeeeeeeEEEEEEe
Confidence 67889999999999999999999876321 1245799999999999999999999999999999999999
Q ss_pred ccccCCHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEeeecCCceEEEEEEeeecCc----ccccceEEecCCccC
Q 003960 634 YGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGR----YGKINKCITFPEMLD 709 (783)
Q Consensus 634 ~~~~~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~~lP~iLiIqL~RF~~~~----~~Ki~~~V~fP~~LD 709 (783)
++ ..+|+++|..|+.+|.++|+++|.|+.|+ ++.+.|+..|.++|+||+|||+||.++. ..|+++.|.||..||
T Consensus 317 ~~-~~~l~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp~~Ld 394 (522)
T 2f1z_A 317 KG-KKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLP 394 (522)
T ss_dssp TT-CCBHHHHHHHHTCEEEECTTSCBCCGGGC-SBCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCCSEEE
T ss_pred CC-cccchHHHHHhhceeecCCcceeecCcCC-ccceEEEEEeecCCceEEEEEEeEEEcccCCcceEcCcEEeCCCeec
Confidence 86 57899999999999999999999999996 5778999999999999999999997643 479999999999999
Q ss_pred CCccccCCC-CCCCcEEEEEEEEEecCCCCCCCCeEEEEEEc-CCCCEEEEcCCeeeeeCCCccCC--------------
Q 003960 710 MMPFMTGTG-DTPPLYMLYSVVVHLDTQNASFSGHYVSYIKD-MQGTWFRIDDTQVHPVPMSQVMS-------------- 773 (783)
Q Consensus 710 L~~~~~~~~-~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~-~~~~W~~fNDs~Vt~vs~e~v~~-------------- 773 (783)
|.+|+.... ..+..|+|+|||+|.|. .++|||+||||. .+++||+|||+.|+++++++|..
T Consensus 395 l~~~~~~~~~~~~~~Y~L~avv~H~G~---~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~ 471 (522)
T 2f1z_A 395 LDEFLQKTDPKDPANYILHAVLVHSGD---NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRH 471 (522)
T ss_dssp CGGGBSSCCTTSCCEEEEEEEEEEECS---SSCSEEEEEECTTSSSCCEEEETTEEEECCHHHHSTTSSCCC--------
T ss_pred chhhhccccCCCCcEEEEEEEEEeccc---CCCceEEEEEecCCCCCEEEEECceeEECCHHHHHHhhcCCCccccccCc
Confidence 999987543 34678999999999996 359999999995 47899999999999999887763
Q ss_pred -CCcEEEEEEC
Q 003960 774 -EGAYMLFYMR 783 (783)
Q Consensus 774 -~~aYILfY~R 783 (783)
..||||||+|
T Consensus 472 ~~~aYiLfY~r 482 (522)
T 2f1z_A 472 CTNAYMLVYIR 482 (522)
T ss_dssp CEEEEEEEEEE
T ss_pred CCceEEEEEEE
Confidence 4699999987
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.94 E-value=4.8e-28 Score=261.13 Aligned_cols=223 Identities=22% Similarity=0.295 Sum_probs=155.5
Q ss_pred CCcccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCcccCCCCchHHHHH-HHHHHHHHhCCCCCChHHHHHHHHhccc
Q 003960 476 SPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCEL-EQHVMMLRESAGPLSPGRILSHMRSISC 554 (783)
Q Consensus 476 ~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~~~~~~~~l~~qL-~~L~~~L~s~~~~isP~~fl~~l~~~~~ 554 (783)
.|.||.|+||||||||+||+|+++|++++.|+..............+...| ..++..|+. .++.|..|+..|++..+
T Consensus 8 ~p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~~~~~~~l~~~L~r~i~~~Lrk--~~~~P~~~l~~LR~~~p 85 (374)
T 2vhf_A 8 KKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKNDVEYYSETQELLRTEIVNPLRI--YGYVCATKIMKLRKILE 85 (374)
T ss_dssp ESCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTSCTTHHHHHHHHHHTTHHHHHH--TSEECHHHHHHHHHHHH
T ss_pred CCccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCcchhHHHHHHHHHHHHHHHHhh--cCCCcHHHHHHHHHHhH
Confidence 479999999999999999999999999999987644333222334688888 899999987 88999999999999988
Q ss_pred ccCC-----CccccHHHHHHHHHHHHHHH-HhhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCccceeeeeee
Q 003960 555 QIGD-----GSQEDAHEFLRLLVASMQSI-CLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMD 628 (783)
Q Consensus 555 ~f~~-----g~QQDA~EFL~~LLd~L~~e-~~~~~~~~~~~~~~~~~~siI~~lF~g~l~~~i~C~~C~~~s~~~e~f~~ 628 (783)
.|.. ..||||+|||..||..|... ..-.+.. ... . ...+++.++|. . ..+.
T Consensus 86 Qfae~~G~~~~QQDaEE~~t~Ll~~L~~~ep~lkl~s--~~~-~-~~~~~~~q~f~----------E------~~e~--- 142 (374)
T 2vhf_A 86 KVEAASGFTSEEKDPEEFLNILFHHILRVEPLLKIRS--AGQ-K-VQDCYFYQIFM----------E------KNEK--- 142 (374)
T ss_dssp HHC--------CCCHHHHHHHHHTTTTCCCCSEEEEE--TTC-C-CEEESCEECCC----------C------CC-----
T ss_pred HHhcccCCCccccCHHHHHHHHHHHHhhccccccccc--ccc-c-ccccHHHHHhc----------C------cccc---
Confidence 8864 68999999999999887532 1000000 000 0 01134555554 0 0000
Q ss_pred eeeccccccCCHHHHHh-hcCCCccCCCCCccccCccCcceeeEEEEeeecCCceEEEEEEeeecCcccccceEEecCCc
Q 003960 629 LTLEIYGWVESLEDALT-QFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGRYGKINKCITFPEM 707 (783)
Q Consensus 629 LsL~I~~~~~sLed~L~-~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~~lP~iLiIqL~RF~~~~~~Ki~~~V~fP~~ 707 (783)
....++..+++ +|+. + .+.|.++|.||+||+.|| +...||-..|.||.+
T Consensus 143 ------~~~e~~~qL~e~nfl~----~------------------gikisrLP~yLtVq~vRF--gKkaKIlrkV~fp~e 192 (374)
T 2vhf_A 143 ------VGVPTIQQLLEWSFIN----S------------------NLKFAEAPSCLIIQMPRF--GKDFKLFKKIFPSLE 192 (374)
T ss_dssp ------CCCCBHHHHHHHHHHH----H------------------TEEESSCCSEEEEECCCC--SSSSSCCCCCBCCSE
T ss_pred ------cCCcHHHHhhhHHHHH----c------------------CCeeecCCcceEEeeecc--CccccccCCCCCcch
Confidence 00234444433 2221 1 123999999999999999 666799999999999
Q ss_pred cCCCccccCC---------------------------C-----------------------------------------C
Q 003960 708 LDMMPFMTGT---------------------------G-----------------------------------------D 719 (783)
Q Consensus 708 LDL~~~~~~~---------------------------~-----------------------------------------~ 719 (783)
||+..++.+. . .
T Consensus 193 LDvtdl~tdelr~~~vr~kl~e~e~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 272 (374)
T 2vhf_A 193 LNITDLLEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQFCKTCNTQVHLHPKRLNHKYNPVSLPKDLPDWDWRHGCI 272 (374)
T ss_dssp ECCGGGBSSSCCBCTTTSCBCCEECGGGTTCTTTTTTSCCEECHHHHHHHTTSGGGTTCCCEECCC--------------
T ss_pred hccHhhcCcchhhccHhHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhhhhcccccccccCccccccccccCCC
Confidence 9998765421 0 0
Q ss_pred CCCcEEEEEEEEEecCCCCCCCCeEEEEEEc--CCCCEEEEcC
Q 003960 720 TPPLYMLYSVVVHLDTQNASFSGHYVSYIKD--MQGTWFRIDD 760 (783)
Q Consensus 720 ~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~--~~~~W~~fND 760 (783)
....|+|+|||+ . ++||||||||. .+++|+.||-
T Consensus 273 psg~yeL~aVlt-a------dsgHYvafVK~~~~d~~W~~FDs 308 (374)
T 2vhf_A 273 PCQNMELFAVLC-I------ETSHYVAFVKYGKDDSAWLFFDS 308 (374)
T ss_dssp --CCEEEEEEEE-E------ETTEEEEEEECSSSTTCEEEEET
T ss_pred CceeEEEEEEEE-c------cCCceEEEEEecCCCCCeEEEec
Confidence 126899999999 2 27999999997 4799999974
No 12
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A
Probab=99.07 E-value=8.4e-11 Score=98.41 Aligned_cols=44 Identities=41% Similarity=0.982 Sum_probs=41.0
Q ss_pred cccccccccCcccccCCccceecChhhhhhhhhHhhHHhchhhhh
Q 003960 101 QLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEK 145 (783)
Q Consensus 101 ~~C~~C~~~~~~~Cs~C~~~~YCs~~cQ~~~W~~~Hk~~C~~~~~ 145 (783)
+.|..|++.+.++|++|+.++||+++||+.||+. ||.+|.++..
T Consensus 16 ~~C~~C~~~~~~~Cs~Ck~v~YCs~eCQ~~~W~~-HK~~C~~~~~ 59 (70)
T 2d8q_A 16 PRCAYCSAEASKRCSRCQNEWYCCRECQVKHWEK-HGKTCVLAAQ 59 (70)
T ss_dssp CBCSSSCCBCCCBCTTTSCCBCSCHHHHHHTHHH-HHHHCCCCCC
T ss_pred CcCCCCCCcccccCCCCCCEeeCCHHHhHHHHHH-HHHHHHHHHH
Confidence 5899999999999999999999999999999997 9999987654
No 13
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}
Probab=98.95 E-value=2.5e-10 Score=92.76 Aligned_cols=43 Identities=35% Similarity=0.815 Sum_probs=39.8
Q ss_pred cccccccccCcccccCCccceecChhhhhhhhhHhhHHhchhhh
Q 003960 101 QLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLE 144 (783)
Q Consensus 101 ~~C~~C~~~~~~~Cs~C~~~~YCs~~cQ~~~W~~~Hk~~C~~~~ 144 (783)
..|..|++.+.++|++|+.++||+++||+.||+. ||.+|..+.
T Consensus 14 ~~C~~C~~~~~~~Cs~C~~v~YCs~~CQ~~dW~~-Hk~~C~~~~ 56 (60)
T 2od1_A 14 ESCWNCGRKASETCSGCNTARYCGSFCQHKDWEK-HHHICGQTL 56 (60)
T ss_dssp SCCTTTSSCCCEECTTTSCCEESSHHHHHHHHHH-HTTTSSCSS
T ss_pred CccccCCCcccccCCCCCCeeecCHHHHHHHHHH-HhHHHcccc
Confidence 5899999999999999999999999999999995 999998654
No 14
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=98.93 E-value=3e-10 Score=93.49 Aligned_cols=43 Identities=35% Similarity=0.815 Sum_probs=39.9
Q ss_pred cccccccccCcccccCCccceecChhhhhhhhhHhhHHhchhhh
Q 003960 101 QLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLE 144 (783)
Q Consensus 101 ~~C~~C~~~~~~~Cs~C~~~~YCs~~cQ~~~W~~~Hk~~C~~~~ 144 (783)
..|..|++.+.++|++|+.++|||++||..||+. ||.+|..+.
T Consensus 18 ~~C~~C~~~~~~~Cs~C~~~~YCs~~CQ~~~W~~-Hk~~C~~~~ 60 (64)
T 2odd_A 18 ESCWNCGRKASETCSGCNTARYCGSFCQHKDWEK-HHHICGQTL 60 (64)
T ss_dssp SSCTTTSSCCCEEETTTSCCEESSHHHHHHHHHH-HTTTTTSSC
T ss_pred CcCccccCCCcccCCCCCChhhCCHHHHHHHHHH-HhHHHhccc
Confidence 5899999999999999999999999999999995 999998654
No 15
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=98.93 E-value=2.9e-10 Score=92.37 Aligned_cols=43 Identities=33% Similarity=0.811 Sum_probs=39.8
Q ss_pred cccccccccCcccccCCccceecChhhhhhhhhHhhHHhchhhh
Q 003960 101 QLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLE 144 (783)
Q Consensus 101 ~~C~~C~~~~~~~Cs~C~~~~YCs~~cQ~~~W~~~Hk~~C~~~~ 144 (783)
..|..|++.+.++|++|+.++||+++||+.||+. ||.+|..++
T Consensus 16 ~~C~~C~~~~~~~Cs~C~~v~YCs~~CQ~~~W~~-Hk~~C~~~~ 58 (60)
T 2dj8_A 16 ESCWNCGRKASETCSGCNTARYCGSFCQHKDWEK-HHHICSGPS 58 (60)
T ss_dssp CCCSSSCSCCCEECTTTSCCEESSHHHHHHTHHH-HTTTSCCSS
T ss_pred cccccCCCCCcccCCCCCCEeeeCHHHHHHHHHH-HHHHHHhcc
Confidence 5799999999999999999999999999999996 999997653
No 16
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=98.86 E-value=7.4e-10 Score=87.22 Aligned_cols=41 Identities=39% Similarity=0.922 Sum_probs=38.1
Q ss_pred cccccccccCcccccCCccceecChhhhhhhhhHhhHHhchh
Q 003960 101 QLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQ 142 (783)
Q Consensus 101 ~~C~~C~~~~~~~Cs~C~~~~YCs~~cQ~~~W~~~Hk~~C~~ 142 (783)
..|..|++++.++|++|+.++|||++||..||+. ||.+|.+
T Consensus 10 ~~C~~C~~~~~~~C~~C~~~~YCs~~CQ~~~W~~-Hk~~C~~ 50 (52)
T 2jw6_A 10 QSCVNCGREAMSECTGCHKVNYCSTFCQRKDWKD-HQHICGQ 50 (52)
T ss_dssp -CCSSSSSSCSEECTTTCSSEESSHHHHHHHTTT-GGGTTTC
T ss_pred CcCCCCCCCCcCcCCCCCCEeecCHHHHHHHHHH-HCHHHcc
Confidence 5799999999999999999999999999999996 9999974
No 17
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.08 E-value=1.5e-06 Score=97.57 Aligned_cols=51 Identities=39% Similarity=0.894 Sum_probs=43.5
Q ss_pred ccccccccc--cCcccccCCccceecChhhhhhhhhHhhHHhchhhhhccCCCC
Q 003960 100 FQLCARCFA--PATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEKTSSSSP 151 (783)
Q Consensus 100 ~~~C~~C~~--~~~~~Cs~C~~~~YCs~~cQ~~~W~~~Hk~~C~~~~~~~~~~~ 151 (783)
...|..|++ ....+|++|+.++|||++||+.||+ .||.+|+.+....+..+
T Consensus 47 ~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~-~Hk~eC~~~~~~~~~~~ 99 (429)
T 3qwp_A 47 GVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWP-DHKRECKCLKSCKPRYP 99 (429)
T ss_dssp TTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHTHH-HHHHHHHHHHHTTTCCC
T ss_pred CCcCcCCCCcCCCCCcCCCCCCcccCChhhhhhhhh-hhHHhhhhHHhcCccCC
Confidence 468999997 4568999999999999999999999 59999999887654333
No 18
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.05 E-value=1.7e-06 Score=97.30 Aligned_cols=48 Identities=35% Similarity=0.821 Sum_probs=42.0
Q ss_pred Ccccccccccc--CcccccCCccceecChhhhhhhhhHhhHHhchhhhhcc
Q 003960 99 GFQLCARCFAP--ATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEKTS 147 (783)
Q Consensus 99 ~~~~C~~C~~~--~~~~Cs~C~~~~YCs~~cQ~~~W~~~Hk~~C~~~~~~~ 147 (783)
....|..|++. ..++|++|+.++|||++||+.||+ .||.+|..+....
T Consensus 48 ~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~-~Hk~eC~~l~~~~ 97 (433)
T 3qww_A 48 RGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWP-LHKLECSSMVVLG 97 (433)
T ss_dssp TTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHHHH-HHTTTHHHHHHSS
T ss_pred cCCcCCcccccCCCCCCCCCCcceeecChhhhhhhhh-HHHHHHHHHHHhC
Confidence 34689999984 568999999999999999999998 5999999988754
No 19
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.88 E-value=3.7e-06 Score=96.04 Aligned_cols=48 Identities=35% Similarity=0.798 Sum_probs=41.8
Q ss_pred Cccccccccc--cCcccccCCccceecChhhhhhhhhHhhHHhchhhhhcc
Q 003960 99 GFQLCARCFA--PATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEKTS 147 (783)
Q Consensus 99 ~~~~C~~C~~--~~~~~Cs~C~~~~YCs~~cQ~~~W~~~Hk~~C~~~~~~~ 147 (783)
....|..|++ ....+|++|+.++|||++||..||+ .||.+|..+....
T Consensus 48 ~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~-~Hk~eC~~~~~~~ 97 (490)
T 3n71_A 48 INFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWL-NHKNECAAIKKYG 97 (490)
T ss_dssp TTTBCTTTCCBCSCCEECTTTSCCEESSHHHHHHHHH-HHHHHHHHHHHHT
T ss_pred cCCcCCCCCCCCCCCCCCCCCCCcCcCCHHHhhhhhh-HHHHHhHHHHhcC
Confidence 3468999987 4557999999999999999999999 5999999888764
No 20
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=96.81 E-value=0.011 Score=59.29 Aligned_cols=181 Identities=15% Similarity=0.195 Sum_probs=99.8
Q ss_pred cccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCcccCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHhcccccC
Q 003960 478 RGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIG 557 (783)
Q Consensus 478 ~GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~~~~~~~~l~~qL~~L~~~L~s~~~~isP~~fl~~l~~~~~~f~ 557 (783)
+=|+=.-|+||+||++=+|-.+... ++.+...+ ..=+|..|...+-... ...
T Consensus 14 ~vLkq~dNNCwVNaa~l~LQ~~~~~-----------------------~~~aw~~f----~~Gd~~~fV~~~Ya~~-~~~ 65 (211)
T 3mp2_A 14 IILKQGDNNCWINACCYQLQAFDFF-----------------------NNEAWEKF----KKGDVMDFVNLCYAAT-TLA 65 (211)
T ss_dssp EEECCCTTCHHHHHHHHHHTTCTTC-----------------------CCHHHHHH----TTTCCHHHHHHHHHHH-TCC
T ss_pred EEEEccCCCcHHHHHHHHHHhcChh-----------------------HHHHHHHH----hCCChHHHHHHHHHHc-CCC
Confidence 3444556999999999888765443 11111111 1235666666664333 566
Q ss_pred CCccccHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCccceeeeeeeeeecccccc
Q 003960 558 DGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWV 637 (783)
Q Consensus 558 ~g~QQDA~EFL~~LLd~L~~e~~~~~~~~~~~~~~~~~~siI~~lF~g~l~~~i~C~~C~~~s~~~e~f~~LsL~I~~~~ 637 (783)
-|+--||+++|..|+.. +-...+...+.|. |+.. .+.+.-...-+..
T Consensus 66 ~G~~gDa~~~L~~Ll~~---------------------------~~~a~~v~~~~C~-Cg~~---~~~~~G~v~~~~~-- 112 (211)
T 3mp2_A 66 RGHSGDAEYLLELMLND---------------------------YSTAKIVLAAKCG-CGEK---EIVLERAVFKLTP-- 112 (211)
T ss_dssp TTSCCCHHHHHHHHHTT---------------------------CCCEEEEEEEEET-TEEE---EEEEEESEEESCC--
T ss_pred CCCCcCHHHHHHHHHHh---------------------------hccceEEEEEEEc-CCCc---eEEEeeeEEEEEe--
Confidence 78999999999999732 2223456677887 8772 2222222222221
Q ss_pred CCHHHHHhhcCCCccCCCCCcc-ccCccCcceeeEEEEeeecCCceEEEEEEeeecCcccccceEEecCCccCCCccccC
Q 003960 638 ESLEDALTQFTSPEDLDGENMY-KCARCATYVRARKQLSIHEAPNILTIVLKRFQEGRYGKINKCITFPEMLDMMPFMTG 716 (783)
Q Consensus 638 ~sLed~L~~~~~~E~l~g~n~y-~C~~C~~~~~a~k~~~i~~lP~iLiIqL~RF~~~~~~Ki~~~V~fP~~LDL~~~~~~ 716 (783)
+ ..+ -.| .|..|++.... ++.+.+=.++|-= . ..|..++.....-
T Consensus 113 --~------------~~~-~~~g~C~~c~~~~~~----~v~~v~Gt~i~~~------------~--~~~~~v~~~~~~v- 158 (211)
T 3mp2_A 113 --L------------KES-FNYGVCGDCMQVNTC----RFLSVEGSGVFVH------------D--ILSKQTPEAMFVV- 158 (211)
T ss_dssp --B------------SSC-EEEEECTTTCCEEEE----EEEEEEEEEEEEE------------E--EECSCCCGGGBSS-
T ss_pred --e------------ecC-CCceECCCCCceeEE----EEEEeeeeEEEEc------------C--CCCccccccccee-
Confidence 0 011 115 79898875431 2333333222221 0 0122233321111
Q ss_pred CCCCCCcEEEEEEEEEecCCCCCCCCeEEEEEEcCCCCEEEEcCCeeeeeC
Q 003960 717 TGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVP 767 (783)
Q Consensus 717 ~~~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~~~~W~~fNDs~Vt~vs 767 (783)
+=.+-++..|. .++|||+.+... .+ +.+|...+.+++
T Consensus 159 --------~~~~~~vF~G~---~~~GHY~~~~~~-~~--~~vDG~~~~~~~ 195 (211)
T 3mp2_A 159 --------KPVMHAVYTGT---TQNGHYMVDDIE-HG--YCVDGMGIKPLK 195 (211)
T ss_dssp --------CCSEEEEEESC---TTTCEEEEEETT-TT--EEEETTEEECCC
T ss_pred --------eceeEEEEEcC---CCCceEEEEecc-cc--eEEeCCceeEcc
Confidence 11345677995 559999999775 33 999999999886
No 21
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.27 E-value=0.015 Score=45.82 Aligned_cols=41 Identities=37% Similarity=0.866 Sum_probs=31.6
Q ss_pred CcCccccccccccCcccccCCccceecChhhhhhhhhHhhHHhchhh
Q 003960 97 KNGFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQL 143 (783)
Q Consensus 97 ~~~~~~C~~C~~~~~~~Cs~C~~~~YCs~~cQ~~~W~~~Hk~~C~~~ 143 (783)
+.+...|..|+..+.-+|.+|. ++|||..|. +. ||..|...
T Consensus 9 ~~~~~~C~vC~~~~kY~CPrC~-~~yCSl~C~----k~-Hk~~C~~~ 49 (56)
T 2yqq_A 9 KCSTVVCVICLEKPKYRCPACR-VPYCSVVCF----RK-HKEQCNPE 49 (56)
T ss_dssp CCCCCCCTTTCSCCSEECTTTC-CEESSHHHH----HH-HHHHCCCC
T ss_pred CCCCCccCcCcCCCeeeCCCCC-CCeeCHHHH----HH-HHhhCcCC
Confidence 3344579999997778999999 569999995 54 77778653
No 22
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=95.20 E-value=0.074 Score=56.45 Aligned_cols=194 Identities=15% Similarity=0.204 Sum_probs=101.8
Q ss_pred CCcccccCCCcccHHHHHHHHhcCHH-HHHHHHhcccCcccCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHhccc
Q 003960 476 SPRGLLNCGNSCYANAVLQCLTCTKP-LVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISC 554 (783)
Q Consensus 476 ~~~GL~NlGNTCYmNSVLQ~L~~ip~-fr~~ll~~~~~~~~~~~~~~l~~qL~~L~~~L~s~~~~isP~~fl~~l~~~~~ 554 (783)
|.+=|+=.-|+||+||++=+|-++.. |+. -.|+.+...+.. =+|..|...+-...
T Consensus 101 G~~vLkq~dNNCwVNaa~l~LQ~~~~~F~~-------------------~~l~~aw~~f~~----Gd~~~FVa~~Ya~~- 156 (315)
T 2fe8_A 101 GLTSIKWADNNCYLSSVLLALQQLEVKFNA-------------------PALQEAYYRARA----GDAANFCALILAYS- 156 (315)
T ss_dssp TEECCCCCTTTHHHHHHHHHHHTSCCCBSS-------------------HHHHHHHHHHHH----TCCHHHHHHHHHHT-
T ss_pred CEEEEeecCCccHHHHHHHHHHhcCCccCC-------------------HHHHHHHHHHhC----CChHHHHHHHHHhc-
Confidence 34445556799999999877765422 111 123333333332 24667777664443
Q ss_pred ccCCCccccHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCccceeeeeeeeeeccc
Q 003960 555 QIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIY 634 (783)
Q Consensus 555 ~f~~g~QQDA~EFL~~LLd~L~~e~~~~~~~~~~~~~~~~~~siI~~lF~g~l~~~i~C~~C~~~s~~~e~f~~LsL~I~ 634 (783)
...-|+--||+++|..|+.... ++ .......+.|..|+.......- +-.-+.
T Consensus 157 ~~~~G~~gDa~~~L~~Ll~~~~----------------------v~---ta~~~~~~~C~~Cg~~~~~~~G---~~a~~~ 208 (315)
T 2fe8_A 157 NKTVGELGDVRETMTHLLQHAN----------------------LE---SAKRVLNVVCKHCGQKTTTLTG---VEAVMY 208 (315)
T ss_dssp TCCTTSCCCHHHHHHHHHTTBC----------------------CT---TCEEEEEEEETTTEEEEEEEET---HHHHEE
T ss_pred CCCCCCCccHHHHHHHHHhcCC----------------------ee---eEEEEEeeecCCCCCCeEEEec---cEEEEE
Confidence 4557899999999999953210 11 2223334789889743222211 100000
Q ss_pred cccCCHHHHHhhcCCCccCCCCCcc-ccCccCcceeeEEEEeeecCCceEEEEEEeeecCcccccceEEecCCccCCCcc
Q 003960 635 GWVESLEDALTQFTSPEDLDGENMY-KCARCATYVRARKQLSIHEAPNILTIVLKRFQEGRYGKINKCITFPEMLDMMPF 713 (783)
Q Consensus 635 ~~~~sLed~L~~~~~~E~l~g~n~y-~C~~C~~~~~a~k~~~i~~lP~iLiIqL~RF~~~~~~Ki~~~V~fP~~LDL~~~ 713 (783)
.-..++.+.-. | + .|..|+.... .+..-.+.|=+|+-+-. ..+.+++
T Consensus 209 ~~~~~~~~~~~---------G---~~~~c~Cg~~~~--~~v~~~~g~~i~~s~~p-----------~~~~~~~------- 256 (315)
T 2fe8_A 209 MGTLSYDNLKT---------G---VSIPCVCGRDAT--QYLVQQESSFVMMSAPP-----------AEYKLQQ------- 256 (315)
T ss_dssp ESCSCHHHHHH---------C---EEEECTTSSEEE--EEEEEEESSEEEEEEEE-----------EEEEEET-------
T ss_pred eccCchHHhhc---------C---CcccccCCCEeE--EEEEEeecCEEEEeCCC-----------CcccccC-------
Confidence 00111222111 1 1 3778886432 22334455555443321 1222210
Q ss_pred ccCCCCCCCcEEEEEEEEEecCCCCCCCCeEEEEEEcCCCCEEEEcCCeeeeeCC
Q 003960 714 MTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPM 768 (783)
Q Consensus 714 ~~~~~~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~~~~W~~fNDs~Vt~vs~ 768 (783)
..+ ++..+..|. .++|||+.+... .+. +++|...+.+++.
T Consensus 257 --------~~~--~~a~vF~G~---~~~GHYt~~~~~-~~~-~~~Dg~~~~~~~~ 296 (315)
T 2fe8_A 257 --------GTF--LCANEYTGN---YQCGHYTHITAK-ETL-YRIDGAHLTKMSE 296 (315)
T ss_dssp --------TSC--SEEEEEESC---GGGCEEEEEEES-SSE-EEEETTEEEEESE
T ss_pred --------Cce--EEEEEEECC---CCccceEEEecC-Cce-eEEeCCcceeccc
Confidence 112 455556895 449999998875 343 8999999999864
No 23
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=88.45 E-value=0.16 Score=40.35 Aligned_cols=34 Identities=41% Similarity=0.922 Sum_probs=27.1
Q ss_pred cccccccc----cCcccccCCccceecChhhhhhhhhHhhHHhch
Q 003960 101 QLCARCFA----PATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQ 141 (783)
Q Consensus 101 ~~C~~C~~----~~~~~Cs~C~~~~YCs~~cQ~~~W~~~Hk~~C~ 141 (783)
..|..|+. ++.-+|.+|. ++|||..|.+. || .|.
T Consensus 12 ~~C~vC~~~~~~~akY~CPrC~-~rYCSl~C~k~-----Hk-~Cs 49 (59)
T 1x4s_A 12 GPCGFCPAGEVQPARYTCPRCN-APYCSLRCYRT-----HG-TCA 49 (59)
T ss_dssp EEECSSCTTCCEEECEECTTTC-CEESSHHHHHH-----HC-CGG
T ss_pred CcCcCCCCCcCCCccccCcCCC-CCccChHHHHH-----Hh-HhC
Confidence 47999984 5667999999 66999999863 66 575
No 24
>2kyg_C Protein CBFA2T1; protein/protein, homodimer bound to monomer, protein binding; NMR {Homo sapiens}
Probab=75.85 E-value=1 Score=31.68 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=23.3
Q ss_pred eecccceeecccchHhhhhhhHHHHHH
Q 003960 18 VLPLVAYVLLGKWSEAAKKRERISLLA 44 (783)
Q Consensus 18 ~~p~~~~~~l~~W~~~a~~~~Ri~~~~ 44 (783)
..|..+||+.+.|+++...+.++++++
T Consensus 5 ~r~gtGYVp~EiWkKaeeavnevkrQa 31 (38)
T 2kyg_C 5 IGSASGYVPEEIWKKAEEAVNEVKRQA 31 (38)
T ss_dssp CSCCCSSCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999885554
No 25
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=66.27 E-value=2.5 Score=39.25 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=29.1
Q ss_pred EEEEEEEEecCCCCCCCCeEEEEEEcCCCCEEEEcCCeeeeeCCC
Q 003960 725 MLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMS 769 (783)
Q Consensus 725 ~L~gVV~H~G~~~s~~sGHYva~Vk~~~~~W~~fNDs~Vt~vs~e 769 (783)
+.+|-|.-.|. +|-|-++-. ...||.+||+...+..+.
T Consensus 108 DfhAgIflkg~------eHAVFa~~T-S~GWyaiDDe~fypwtPd 145 (167)
T 1qmy_A 108 DFHAGIFLKGQ------EHAVFACVT-SNGWYAIDDEDFYPWTPD 145 (167)
T ss_dssp GEEEEEEEETT------TEEEEEECC-TTSSEEEETTEEEECCCC
T ss_pred hhhhheeecCC------CceEEEEEc-cCceEEecccccccCCCC
Confidence 34566666774 899888876 666999999999998654
No 26
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=42.12 E-value=5.8 Score=36.59 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=8.9
Q ss_pred CCcccccccccccCcccccccc
Q 003960 419 SNVVSKMGIMKMMGLRKSTKLR 440 (783)
Q Consensus 419 ~~~L~~~Gi~k~~~l~~~~kt~ 440 (783)
..||+|||| +|..+.||+
T Consensus 111 ~~hl~~fgi----~~~~~~kte 128 (129)
T 2g45_A 111 AEHLSHFGI----DMLKMQKTD 128 (129)
T ss_dssp HHHHHTTTC----CTTTCCCC-
T ss_pred HHHHHHHCC----ChhhhhccC
Confidence 345555555 555555554
No 27
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=34.92 E-value=14 Score=30.12 Aligned_cols=31 Identities=23% Similarity=0.446 Sum_probs=21.7
Q ss_pred cccccccccCcccccCCccceecChhhhhhhh
Q 003960 101 QLCARCFAPATTRCSRCKSVRYCSGKCQIIHW 132 (783)
Q Consensus 101 ~~C~~C~~~~~~~Cs~C~~~~YCs~~cQ~~~W 132 (783)
..|..||++..-+ ..=..+.|||+.|+..|-
T Consensus 10 ~~CP~Cgkp~~W~-~~~~~rPFCSeRCr~iDL 40 (68)
T 1lv3_A 10 VNCPTCGKTVVWG-EISPFRPFCSKRCQLIDL 40 (68)
T ss_dssp EECTTTCCEEECS-SSSSCCSSSSHHHHHHHH
T ss_pred CcCCCCCCccccc-ccCCCCcccCHHHHhhhH
Confidence 4799999864311 013456799999999983
No 28
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=27.70 E-value=49 Score=30.59 Aligned_cols=16 Identities=25% Similarity=0.362 Sum_probs=11.5
Q ss_pred EEEEEEEecCCCCccc
Q 003960 606 RLWSKVKCLRCSHESE 621 (783)
Q Consensus 606 ~l~~~i~C~~C~~~s~ 621 (783)
...-..+|.+||+.-.
T Consensus 66 ~~p~~~~C~~CG~~~~ 81 (139)
T 3a43_A 66 EEEAVFKCRNCNYEWK 81 (139)
T ss_dssp EECCEEEETTTCCEEE
T ss_pred ecCCcEECCCCCCEEe
Confidence 3445789999998633
No 29
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=23.46 E-value=30 Score=26.27 Aligned_cols=31 Identities=26% Similarity=0.386 Sum_probs=20.7
Q ss_pred CccccccccccCcccccCCccceecChhhhhh
Q 003960 99 GFQLCARCFAPATTRCSRCKSVRYCSGKCQII 130 (783)
Q Consensus 99 ~~~~C~~C~~~~~~~Cs~C~~~~YCs~~cQ~~ 130 (783)
+...|..||+..... .+=+.-+|||..|..+
T Consensus 17 ~~~~C~~CG~~i~~~-~~~r~krFCS~sCR~~ 47 (49)
T 2l8e_A 17 NLLKCEYCGKYAPAE-QFRGSKRFCSMTCAKR 47 (49)
T ss_dssp SEEECTTTCCEEEGG-GCTTTSSSCSHHHHHH
T ss_pred CCCcChhccCccccc-cCCCCCccCCHHHHhh
Confidence 345799999854421 1334557999999865
No 30
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=21.77 E-value=62 Score=25.98 Aligned_cols=23 Identities=26% Similarity=0.865 Sum_probs=17.9
Q ss_pred cccccccccC-c--ccccCCccceecCh
Q 003960 101 QLCARCFAPA-T--TRCSRCKSVRYCSG 125 (783)
Q Consensus 101 ~~C~~C~~~~-~--~~Cs~C~~~~YCs~ 125 (783)
.+|..|++.. . ..| +|... ||++
T Consensus 16 ~rC~~C~kkvgl~~f~C-rCg~~-FC~~ 41 (64)
T 1wg2_A 16 NRCFSCNKKVGVMGFKC-KCGST-FCGS 41 (64)
T ss_dssp CSCTTTCCCCTTSCEEC-TTSCE-ECSS
T ss_pred CcChhhCCcccccCeEe-ecCCE-eccc
Confidence 5899999853 2 589 89988 8864
No 31
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=20.91 E-value=64 Score=26.65 Aligned_cols=23 Identities=30% Similarity=0.862 Sum_probs=17.8
Q ss_pred cccccccccCc---ccccCCccceecCh
Q 003960 101 QLCARCFAPAT---TRCSRCKSVRYCSG 125 (783)
Q Consensus 101 ~~C~~C~~~~~---~~Cs~C~~~~YCs~ 125 (783)
.+|..|++... ..| +|... ||+.
T Consensus 26 ~RC~~C~kkvgL~~f~C-rCg~~-FCs~ 51 (74)
T 1wfp_A 26 TRCLSCNKKVGVTGFKC-RCGST-FCGT 51 (74)
T ss_dssp CBCSSSCCBCTTTCEEC-TTSCE-ECTT
T ss_pred ccchhhcCcccccceEe-ccCCE-eccc
Confidence 68999997532 589 89988 8864
Done!