Query 003961
Match_columns 783
No_of_seqs 47 out of 49
Neff 2.8
Searched_HMMs 46136
Date Thu Mar 28 15:04:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003961.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003961hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02224 chromosome segregatio 98.9 3.2E-05 7E-10 89.1 41.2 76 274-349 374-451 (880)
2 TIGR02169 SMC_prok_A chromosom 98.9 0.00011 2.5E-09 85.3 45.3 13 679-691 555-567 (1164)
3 PF07888 CALCOCO1: Calcium bin 98.8 4.6E-05 9.9E-10 86.2 36.3 240 230-503 159-403 (546)
4 TIGR02168 SMC_prok_B chromosom 98.7 0.00018 3.9E-09 83.0 38.6 12 631-642 1091-1102(1179)
5 PRK01156 chromosome segregatio 98.6 0.00049 1.1E-08 80.1 40.3 91 311-408 410-505 (895)
6 TIGR00606 rad50 rad50. This fa 98.6 7.9E-05 1.7E-09 90.7 35.2 164 83-270 296-468 (1311)
7 TIGR02169 SMC_prok_A chromosom 98.6 0.0007 1.5E-08 78.9 41.1 33 376-408 291-323 (1164)
8 KOG0161 Myosin class II heavy 98.6 0.00034 7.5E-09 88.1 40.8 67 530-596 1189-1258(1930)
9 TIGR00606 rad50 rad50. This fa 98.6 0.00071 1.5E-08 82.6 42.3 65 276-343 791-862 (1311)
10 COG1196 Smc Chromosome segrega 98.6 0.00075 1.6E-08 81.6 41.7 43 113-155 31-74 (1163)
11 TIGR02168 SMC_prok_B chromosom 98.6 0.00069 1.5E-08 78.4 39.3 43 108-150 25-68 (1179)
12 PRK02224 chromosome segregatio 98.6 0.00037 7.9E-09 80.6 36.0 82 425-506 468-558 (880)
13 PRK03918 chromosome segregatio 98.4 0.0065 1.4E-07 70.2 40.7 88 314-409 402-489 (880)
14 PF09726 Macoilin: Transmembra 98.4 0.001 2.2E-08 77.4 33.2 199 314-586 457-657 (697)
15 KOG0161 Myosin class II heavy 98.3 0.0057 1.2E-07 77.7 41.0 158 213-412 1005-1172(1930)
16 PRK03918 chromosome segregatio 98.0 0.056 1.2E-06 62.7 46.6 84 261-344 389-486 (880)
17 PF10174 Cast: RIM-binding pro 98.0 0.071 1.5E-06 63.4 39.2 92 254-346 51-150 (775)
18 PF12128 DUF3584: Protein of u 98.0 0.038 8.1E-07 67.7 37.0 67 68-134 243-309 (1201)
19 COG1196 Smc Chromosome segrega 97.9 0.12 2.5E-06 63.3 41.1 53 201-253 142-197 (1163)
20 PF05701 WEMBL: Weak chloropla 97.9 0.052 1.1E-06 61.3 33.8 145 375-548 277-425 (522)
21 PF07888 CALCOCO1: Calcium bin 97.9 0.072 1.6E-06 61.2 34.2 62 278-344 172-233 (546)
22 PRK04863 mukB cell division pr 97.8 0.21 4.5E-06 63.1 41.0 79 205-283 256-334 (1486)
23 KOG4674 Uncharacterized conser 97.8 0.15 3.2E-06 65.1 37.9 278 202-524 993-1286(1822)
24 KOG4643 Uncharacterized coiled 97.8 0.076 1.6E-06 64.3 33.8 61 464-524 415-482 (1195)
25 KOG4674 Uncharacterized conser 97.7 0.35 7.6E-06 61.9 40.9 144 80-268 33-183 (1822)
26 PF15070 GOLGA2L5: Putative go 97.6 0.26 5.7E-06 57.4 34.6 295 229-583 5-311 (617)
27 PHA02562 46 endonuclease subun 97.6 0.16 3.6E-06 56.0 31.0 33 381-413 215-247 (562)
28 PF05557 MAD: Mitotic checkpoi 97.5 0.00058 1.3E-08 78.7 11.9 123 279-414 300-427 (722)
29 PRK01156 chromosome segregatio 97.5 0.44 9.5E-06 56.3 38.6 92 310-405 416-509 (895)
30 PHA02562 46 endonuclease subun 97.4 0.068 1.5E-06 58.9 25.7 161 310-507 213-373 (562)
31 PF00261 Tropomyosin: Tropomyo 97.4 0.099 2.2E-06 53.3 25.0 64 521-591 174-237 (237)
32 KOG0971 Microtubule-associated 97.4 0.61 1.3E-05 56.6 35.6 143 226-391 229-387 (1243)
33 KOG0994 Extracellular matrix g 97.4 0.7 1.5E-05 57.2 36.8 398 200-624 1205-1649(1758)
34 PF12128 DUF3584: Protein of u 97.4 0.72 1.6E-05 57.0 43.9 50 72-125 343-392 (1201)
35 PRK11637 AmiB activator; Provi 97.4 0.13 2.9E-06 56.1 26.5 36 374-409 49-84 (428)
36 KOG0612 Rho-associated, coiled 97.4 0.43 9.3E-06 59.1 32.6 24 278-301 462-485 (1317)
37 PF10174 Cast: RIM-binding pro 97.3 0.64 1.4E-05 55.7 43.2 115 230-345 123-259 (775)
38 PRK04863 mukB cell division pr 97.3 1.1 2.3E-05 57.2 36.3 36 499-534 554-590 (1486)
39 KOG0996 Structural maintenance 97.3 0.23 4.9E-06 61.2 29.0 219 310-565 778-1012(1293)
40 KOG4643 Uncharacterized coiled 97.3 0.89 1.9E-05 55.7 42.8 50 66-118 172-224 (1195)
41 PF10375 GRAB: GRIP-related Ar 97.2 0.00016 3.4E-09 49.5 1.7 18 595-612 2-19 (19)
42 KOG0612 Rho-associated, coiled 97.2 0.98 2.1E-05 56.2 33.3 36 373-408 582-617 (1317)
43 PF09755 DUF2046: Uncharacteri 97.2 0.17 3.6E-06 54.9 24.0 221 215-457 35-286 (310)
44 PF00038 Filament: Intermediat 97.1 0.43 9.3E-06 49.4 29.8 39 374-412 49-87 (312)
45 KOG0977 Nuclear envelope prote 97.1 0.81 1.8E-05 53.0 29.6 107 220-344 34-140 (546)
46 KOG4673 Transcription factor T 96.9 1.4 3.1E-05 52.4 32.5 259 371-637 401-706 (961)
47 KOG0964 Structural maintenance 96.9 1.8 3.8E-05 53.2 32.7 72 269-345 215-286 (1200)
48 PLN03188 kinesin-12 family pro 96.8 2.1 4.6E-05 53.7 31.9 119 204-325 868-1001(1320)
49 KOG0250 DNA repair protein RAD 96.8 1.7 3.6E-05 53.7 30.1 36 309-344 220-255 (1074)
50 PF05701 WEMBL: Weak chloropla 96.7 1.6 3.4E-05 49.8 37.8 25 231-255 58-82 (522)
51 PF00038 Filament: Intermediat 96.7 0.91 2E-05 47.0 34.3 106 472-590 196-304 (312)
52 KOG4673 Transcription factor T 96.6 2.6 5.6E-05 50.4 34.2 99 311-451 524-624 (961)
53 PF00261 Tropomyosin: Tropomyo 96.6 1.1 2.3E-05 46.0 25.3 203 375-591 11-223 (237)
54 KOG0250 DNA repair protein RAD 96.6 3.3 7.2E-05 51.2 34.5 40 567-610 502-542 (1074)
55 PF05557 MAD: Mitotic checkpoi 96.5 0.0028 6E-08 73.2 5.3 165 282-450 248-431 (722)
56 KOG0996 Structural maintenance 96.4 4.2 9.2E-05 50.8 35.2 89 256-344 345-439 (1293)
57 KOG0977 Nuclear envelope prote 96.4 0.93 2E-05 52.5 23.9 120 309-451 45-174 (546)
58 KOG0976 Rho/Rac1-interacting s 96.4 3.6 7.8E-05 49.9 36.3 104 225-346 103-209 (1265)
59 KOG0018 Structural maintenance 96.3 4.2 9.1E-05 50.4 29.3 43 113-157 32-75 (1141)
60 COG0419 SbcC ATPase involved i 96.3 4.1 8.8E-05 49.0 49.2 22 72-93 282-303 (908)
61 PF01576 Myosin_tail_1: Myosin 96.0 0.0016 3.5E-08 77.1 0.0 37 309-345 137-173 (859)
62 KOG1029 Endocytic adaptor prot 96.0 0.84 1.8E-05 54.8 21.5 48 406-457 379-426 (1118)
63 PF09726 Macoilin: Transmembra 96.0 2.1 4.6E-05 50.8 24.8 225 222-485 419-657 (697)
64 PF01576 Myosin_tail_1: Myosin 95.9 0.002 4.2E-08 76.4 0.0 40 373-413 469-508 (859)
65 PRK11637 AmiB activator; Provi 95.9 3.5 7.5E-05 45.4 28.2 12 540-551 211-222 (428)
66 COG4942 Membrane-bound metallo 95.9 4.3 9.3E-05 46.0 27.6 88 279-408 40-127 (420)
67 KOG0995 Centromere-associated 95.9 5.2 0.00011 46.9 32.9 101 318-449 260-363 (581)
68 COG1579 Zn-ribbon protein, pos 95.8 2.6 5.6E-05 44.5 21.9 33 381-413 19-51 (239)
69 KOG0933 Structural maintenance 95.8 7.5 0.00016 48.2 29.1 70 434-510 764-833 (1174)
70 TIGR02680 conserved hypothetic 95.8 2.8 6E-05 52.9 25.9 73 380-452 743-820 (1353)
71 PF05622 HOOK: HOOK protein; 95.8 0.0024 5.3E-08 73.7 0.0 123 217-345 235-360 (713)
72 KOG1029 Endocytic adaptor prot 95.7 4.8 0.0001 48.8 25.8 87 315-414 435-521 (1118)
73 KOG0980 Actin-binding protein 95.7 7 0.00015 47.8 27.3 218 373-601 327-579 (980)
74 PRK09039 hypothetical protein; 95.7 0.67 1.5E-05 50.2 17.6 55 278-332 47-103 (343)
75 COG1340 Uncharacterized archae 95.7 3.3 7.1E-05 45.1 22.4 216 277-508 23-244 (294)
76 PF01465 GRIP: GRIP domain; I 95.6 0.025 5.4E-07 45.5 5.2 41 598-638 2-45 (46)
77 PF15066 CAGE1: Cancer-associa 95.5 3.5 7.5E-05 47.4 22.8 150 251-451 309-458 (527)
78 KOG0963 Transcription factor/C 95.4 7.8 0.00017 45.8 31.3 63 277-339 15-88 (629)
79 KOG0933 Structural maintenance 95.4 10 0.00022 47.2 33.7 98 243-344 678-775 (1174)
80 PF15070 GOLGA2L5: Putative go 95.4 7.9 0.00017 45.6 31.6 41 311-351 30-70 (617)
81 PF06160 EzrA: Septation ring 95.4 7.1 0.00015 45.0 40.1 322 274-621 158-516 (560)
82 KOG0964 Structural maintenance 95.3 11 0.00023 46.9 28.7 49 374-422 856-904 (1200)
83 COG4372 Uncharacterized protei 95.3 6.9 0.00015 44.4 25.1 132 373-508 96-233 (499)
84 PF09787 Golgin_A5: Golgin sub 95.3 2.4 5.3E-05 48.1 20.9 57 495-551 200-256 (511)
85 PF09787 Golgin_A5: Golgin sub 95.2 7.3 0.00016 44.4 28.6 101 226-330 121-241 (511)
86 KOG0946 ER-Golgi vesicle-tethe 95.2 10 0.00022 46.3 26.1 37 219-255 630-666 (970)
87 KOG0962 DNA repair protein RAD 95.1 14 0.0003 47.0 36.5 216 380-596 879-1129(1294)
88 KOG0994 Extracellular matrix g 94.9 6.1 0.00013 49.7 23.8 48 464-511 1549-1596(1758)
89 PF05622 HOOK: HOOK protein; 94.7 0.0086 1.9E-07 69.3 0.0 125 381-524 293-420 (713)
90 KOG0980 Actin-binding protein 94.7 15 0.00033 45.2 28.4 30 310-339 410-439 (980)
91 PF04849 HAP1_N: HAP1 N-termin 94.5 9 0.0002 42.0 22.1 139 311-497 161-302 (306)
92 PF13514 AAA_27: AAA domain 94.5 17 0.00037 44.9 35.3 16 628-643 1024-1039(1111)
93 KOG0946 ER-Golgi vesicle-tethe 94.4 16 0.00034 44.8 25.1 185 376-578 682-882 (970)
94 PRK09039 hypothetical protein; 94.4 7.2 0.00016 42.5 21.0 28 512-539 140-167 (343)
95 PRK04778 septation ring format 94.2 14 0.0003 42.7 32.2 30 270-299 249-278 (569)
96 TIGR01005 eps_transp_fam exopo 94.1 12 0.00027 43.8 23.6 140 314-484 191-336 (754)
97 PF04849 HAP1_N: HAP1 N-termin 94.0 11 0.00025 41.2 23.6 137 381-538 162-298 (306)
98 KOG0971 Microtubule-associated 94.0 21 0.00046 44.3 32.3 65 538-605 459-527 (1243)
99 TIGR02680 conserved hypothetic 94.0 25 0.00053 44.9 32.9 33 312-344 744-776 (1353)
100 TIGR03007 pepcterm_ChnLen poly 93.7 13 0.00029 41.1 21.9 31 377-407 159-189 (498)
101 PLN02939 transferase, transfer 93.7 24 0.00053 43.9 27.1 199 311-537 129-345 (977)
102 KOG0978 E3 ubiquitin ligase in 93.7 21 0.00045 43.0 30.9 81 456-539 381-484 (698)
103 KOG4302 Microtubule-associated 93.5 21 0.00046 42.7 39.9 170 233-412 66-259 (660)
104 PF09730 BicD: Microtubule-ass 93.3 24 0.00053 42.6 34.7 91 491-581 372-463 (717)
105 PF08317 Spc7: Spc7 kinetochor 93.3 14 0.0003 39.8 21.0 41 522-562 229-269 (325)
106 PF09789 DUF2353: Uncharacteri 93.2 2.4 5.2E-05 46.4 14.8 134 310-450 72-214 (319)
107 KOG0976 Rho/Rac1-interacting s 93.2 27 0.00059 43.0 35.2 22 622-644 579-600 (1265)
108 PF09789 DUF2353: Uncharacteri 93.1 14 0.00031 40.6 20.4 93 383-483 69-180 (319)
109 PF05010 TACC: Transforming ac 93.1 12 0.00027 38.8 21.6 150 311-487 10-166 (207)
110 PRK11281 hypothetical protein; 93.0 33 0.00072 43.3 25.5 70 310-408 36-109 (1113)
111 COG1579 Zn-ribbon protein, pos 93.0 11 0.00025 39.9 18.8 25 456-480 58-82 (239)
112 PF08317 Spc7: Spc7 kinetochor 92.9 8 0.00017 41.5 18.1 38 225-264 72-109 (325)
113 KOG0999 Microtubule-associated 92.8 26 0.00056 41.6 38.7 70 70-141 7-85 (772)
114 PF05911 DUF869: Plant protein 92.7 16 0.00035 44.3 21.8 167 394-581 18-206 (769)
115 KOG0244 Kinesin-like protein [ 92.5 35 0.00076 42.3 25.0 75 225-308 327-401 (913)
116 KOG0999 Microtubule-associated 92.4 29 0.00063 41.2 28.2 187 310-530 8-215 (772)
117 PRK11281 hypothetical protein; 92.3 40 0.00087 42.6 32.1 79 314-406 77-155 (1113)
118 TIGR03185 DNA_S_dndD DNA sulfu 92.2 28 0.0006 40.7 31.4 14 630-643 552-565 (650)
119 TIGR01843 type_I_hlyD type I s 92.2 18 0.00039 38.3 23.0 31 314-344 127-157 (423)
120 PLN02939 transferase, transfer 92.1 36 0.00077 42.6 23.9 293 259-609 166-472 (977)
121 KOG0978 E3 ubiquitin ligase in 92.1 34 0.00073 41.4 36.9 45 377-421 376-421 (698)
122 PF06548 Kinesin-related: Kine 92.1 28 0.0006 40.3 31.9 107 217-327 118-239 (488)
123 smart00755 Grip golgin-97, Ran 91.9 0.35 7.6E-06 39.4 4.9 40 599-638 2-43 (46)
124 PF05483 SCP-1: Synaptonemal c 91.9 36 0.00079 41.2 36.9 313 245-586 359-689 (786)
125 PF15254 CCDC14: Coiled-coil d 91.5 36 0.00078 41.7 22.4 82 420-508 457-538 (861)
126 PF05667 DUF812: Protein of un 91.4 36 0.00078 40.3 27.0 38 376-413 325-362 (594)
127 TIGR03007 pepcterm_ChnLen poly 91.4 27 0.00059 38.8 21.1 134 318-484 162-295 (498)
128 PF06160 EzrA: Septation ring 91.2 34 0.00075 39.6 30.7 79 468-551 411-493 (560)
129 COG0419 SbcC ATPase involved i 91.1 43 0.00093 40.6 40.9 24 381-404 419-442 (908)
130 TIGR01005 eps_transp_fam exopo 91.0 38 0.00083 39.9 22.7 29 380-408 195-223 (754)
131 KOG2991 Splicing regulator [RN 90.9 3.4 7.4E-05 44.7 12.4 143 264-413 165-312 (330)
132 PRK12704 phosphodiesterase; Pr 90.7 38 0.00082 39.2 21.5 15 576-590 189-203 (520)
133 PF13870 DUF4201: Domain of un 90.7 18 0.00039 35.5 17.2 134 226-411 4-137 (177)
134 KOG0240 Kinesin (SMY1 subfamil 90.3 24 0.00053 41.7 19.2 49 72-120 112-162 (607)
135 TIGR03017 EpsF chain length de 90.3 31 0.00068 37.6 23.9 33 314-346 168-200 (444)
136 PF08614 ATG16: Autophagy prot 90.1 4.6 0.0001 40.3 11.9 104 310-451 67-170 (194)
137 KOG2129 Uncharacterized conser 89.9 44 0.00094 38.7 21.9 57 395-458 255-311 (552)
138 TIGR01843 type_I_hlyD type I s 89.6 31 0.00067 36.6 22.6 23 386-408 81-103 (423)
139 PF13514 AAA_27: AAA domain 89.5 65 0.0014 40.1 38.1 142 262-413 345-493 (1111)
140 TIGR03319 YmdA_YtgF conserved 89.4 48 0.001 38.4 21.8 16 576-591 183-198 (514)
141 KOG4603 TBP-1 interacting prot 89.3 11 0.00025 38.8 14.0 87 452-546 67-154 (201)
142 PF12325 TMF_TATA_bd: TATA ele 89.2 12 0.00027 35.8 13.4 90 486-585 24-116 (120)
143 PF04156 IncA: IncA protein; 89.0 22 0.00048 34.7 15.4 29 385-413 80-108 (191)
144 PF07111 HCR: Alpha helical co 88.9 63 0.0014 39.3 36.6 31 383-414 475-505 (739)
145 KOG4809 Rab6 GTPase-interactin 88.7 60 0.0013 38.6 29.0 228 254-504 175-406 (654)
146 PF15619 Lebercilin: Ciliary p 88.5 32 0.00069 35.3 22.4 172 381-583 14-189 (194)
147 KOG4593 Mitotic checkpoint pro 88.2 69 0.0015 38.9 27.2 73 393-469 98-170 (716)
148 KOG1853 LIS1-interacting prote 88.1 29 0.00063 37.9 16.5 33 376-408 49-81 (333)
149 PF08826 DMPK_coil: DMPK coile 88.0 4.6 0.0001 34.9 8.8 43 496-541 1-43 (61)
150 PRK04778 septation ring format 88.0 59 0.0013 37.7 39.2 23 75-97 26-48 (569)
151 PF13851 GAS: Growth-arrest sp 87.9 26 0.00057 35.8 15.7 67 486-552 63-129 (201)
152 PF10498 IFT57: Intra-flagella 87.3 14 0.00031 40.9 14.4 84 465-562 235-319 (359)
153 COG4942 Membrane-bound metallo 87.3 62 0.0013 37.2 28.0 69 312-414 40-108 (420)
154 PRK10246 exonuclease subunit S 87.2 89 0.0019 38.9 38.1 49 285-339 597-645 (1047)
155 PRK10929 putative mechanosensi 86.8 1E+02 0.0022 39.2 32.5 68 313-398 61-128 (1109)
156 PF04111 APG6: Autophagy prote 86.8 6.8 0.00015 42.3 11.4 77 310-414 9-85 (314)
157 PF15619 Lebercilin: Ciliary p 86.7 40 0.00088 34.5 24.1 50 283-344 4-53 (194)
158 smart00787 Spc7 Spc7 kinetocho 86.3 56 0.0012 35.7 18.3 44 521-564 223-266 (312)
159 KOG0243 Kinesin-like protein [ 86.3 86 0.0019 39.6 21.2 181 337-539 344-548 (1041)
160 KOG4403 Cell surface glycoprot 86.2 28 0.0006 40.3 15.9 64 376-451 256-321 (575)
161 PF04156 IncA: IncA protein; 85.7 29 0.00063 33.9 14.1 34 311-344 82-115 (191)
162 TIGR03017 EpsF chain length de 85.6 60 0.0013 35.5 22.4 43 465-507 255-297 (444)
163 KOG0963 Transcription factor/C 85.5 91 0.002 37.5 37.2 119 208-344 20-141 (629)
164 TIGR03185 DNA_S_dndD DNA sulfu 85.1 86 0.0019 36.8 34.8 6 29-34 32-37 (650)
165 PF10168 Nup88: Nuclear pore c 84.4 58 0.0013 39.3 18.3 158 221-409 558-715 (717)
166 PF10473 CENP-F_leu_zip: Leuci 84.0 47 0.001 32.9 17.5 26 319-344 12-37 (140)
167 PF09755 DUF2046: Uncharacteri 83.7 78 0.0017 35.2 28.0 36 311-346 28-63 (310)
168 COG1340 Uncharacterized archae 83.4 77 0.0017 34.9 28.5 52 278-344 3-54 (294)
169 PF07989 Microtub_assoc: Micro 83.2 11 0.00025 33.4 9.2 69 312-413 2-70 (75)
170 PF03999 MAP65_ASE1: Microtubu 83.1 5.1 0.00011 46.6 9.0 133 274-411 88-239 (619)
171 PF12777 MT: Microtubule-bindi 81.7 85 0.0018 34.2 19.7 63 515-577 234-296 (344)
172 PF09730 BicD: Microtubule-ass 81.6 1.4E+02 0.003 36.6 42.2 89 434-529 547-660 (717)
173 PF12718 Tropomyosin_1: Tropom 81.5 55 0.0012 32.0 19.2 8 555-562 112-119 (143)
174 PF11559 ADIP: Afadin- and alp 81.2 52 0.0011 31.4 13.7 42 500-541 43-84 (151)
175 PRK00106 hypothetical protein; 81.2 1.2E+02 0.0027 35.7 23.7 16 576-591 204-219 (535)
176 KOG0804 Cytoplasmic Zn-finger 81.0 23 0.00049 41.0 12.7 30 485-514 428-457 (493)
177 PLN03229 acetyl-coenzyme A car 80.9 98 0.0021 38.0 18.3 68 278-346 463-543 (762)
178 TIGR00634 recN DNA repair prot 80.5 1.2E+02 0.0026 35.1 22.5 34 380-413 169-202 (563)
179 COG2433 Uncharacterized conser 80.3 5.9 0.00013 46.8 8.2 80 310-406 429-508 (652)
180 PF10168 Nup88: Nuclear pore c 80.2 84 0.0018 38.1 17.6 34 508-541 631-664 (717)
181 PF05911 DUF869: Plant protein 80.0 1.6E+02 0.0034 36.3 20.6 108 312-457 591-698 (769)
182 PF07926 TPR_MLP1_2: TPR/MLP1/ 79.8 24 0.00052 33.5 10.7 51 219-269 15-65 (132)
183 PF15066 CAGE1: Cancer-associa 79.8 1.3E+02 0.0029 35.3 21.3 150 424-590 330-485 (527)
184 PF06818 Fez1: Fez1; InterPro 79.6 85 0.0019 33.0 19.2 33 381-413 12-44 (202)
185 KOG1899 LAR transmembrane tyro 79.6 1.2E+02 0.0026 36.9 18.0 45 258-302 106-150 (861)
186 PF06456 Arfaptin: Arfaptin-li 79.4 76 0.0016 33.3 15.1 44 465-508 177-225 (229)
187 KOG0995 Centromere-associated 79.2 1.5E+02 0.0032 35.5 38.3 167 258-453 310-481 (581)
188 PF10146 zf-C4H2: Zinc finger- 79.1 60 0.0013 34.3 14.2 81 495-592 28-109 (230)
189 PF04111 APG6: Autophagy prote 78.9 3.4 7.5E-05 44.5 5.5 86 261-346 48-135 (314)
190 KOG1003 Actin filament-coating 78.3 96 0.0021 32.8 24.8 198 379-590 4-204 (205)
191 PRK14474 F0F1 ATP synthase sub 77.6 99 0.0021 32.6 17.2 36 622-657 152-187 (250)
192 COG5293 Predicted ATPase [Gene 77.6 56 0.0012 38.3 14.4 68 433-526 336-403 (591)
193 KOG4807 F-actin binding protei 77.3 1.5E+02 0.0032 34.4 26.0 121 275-413 243-379 (593)
194 PLN03188 kinesin-12 family pro 76.9 2.4E+02 0.0053 36.7 28.7 63 515-581 1172-1234(1320)
195 PF03962 Mnd1: Mnd1 family; I 76.7 43 0.00094 34.0 12.1 37 308-344 60-96 (188)
196 KOG0240 Kinesin (SMY1 subfamil 76.7 1.8E+02 0.0038 35.0 22.3 14 617-630 533-546 (607)
197 KOG4403 Cell surface glycoprot 76.6 1.6E+02 0.0035 34.5 19.1 39 466-504 254-292 (575)
198 KOG0244 Kinesin-like protein [ 76.5 2.2E+02 0.0047 35.9 22.1 56 285-340 331-386 (913)
199 KOG2129 Uncharacterized conser 76.1 1.6E+02 0.0035 34.3 22.5 84 433-524 180-275 (552)
200 PF07798 DUF1640: Protein of u 76.1 87 0.0019 31.1 15.3 23 462-484 136-158 (177)
201 COG3206 GumC Uncharacterized p 75.9 1.4E+02 0.003 33.4 23.7 72 378-449 238-309 (458)
202 PF09738 DUF2051: Double stran 75.8 52 0.0011 36.1 13.1 137 207-344 85-246 (302)
203 PF00769 ERM: Ezrin/radixin/mo 75.8 1E+02 0.0022 32.5 14.9 34 375-408 1-34 (246)
204 PRK12705 hypothetical protein; 75.3 1.7E+02 0.0038 34.3 18.6 15 576-590 177-191 (508)
205 KOG0972 Huntingtin interacting 74.6 59 0.0013 36.3 13.1 108 471-579 248-356 (384)
206 PF15450 DUF4631: Domain of un 74.5 1.9E+02 0.0041 34.3 24.4 132 454-590 157-290 (531)
207 smart00787 Spc7 Spc7 kinetocho 74.1 1.4E+02 0.0031 32.7 18.1 102 226-344 68-171 (312)
208 PF14662 CCDC155: Coiled-coil 74.0 1.2E+02 0.0026 31.8 22.3 139 388-562 10-148 (193)
209 KOG1853 LIS1-interacting prote 73.9 1.5E+02 0.0032 32.8 19.4 63 274-344 24-86 (333)
210 PF15290 Syntaphilin: Golgi-lo 73.8 62 0.0014 35.7 13.0 89 380-511 69-157 (305)
211 PF13851 GAS: Growth-arrest sp 73.8 1.1E+02 0.0024 31.3 19.0 48 556-603 105-152 (201)
212 PF12718 Tropomyosin_1: Tropom 73.8 93 0.002 30.4 20.0 60 381-451 2-61 (143)
213 KOG1962 B-cell receptor-associ 73.0 26 0.00057 36.9 9.7 58 525-582 153-210 (216)
214 PF13870 DUF4201: Domain of un 72.9 1E+02 0.0022 30.4 21.1 28 561-588 148-175 (177)
215 PF07106 TBPIP: Tat binding pr 72.3 28 0.00061 33.9 9.3 66 310-407 72-137 (169)
216 KOG4572 Predicted DNA-binding 72.3 2.7E+02 0.0059 35.1 23.6 129 268-413 948-1088(1424)
217 PF12325 TMF_TATA_bd: TATA ele 72.0 98 0.0021 29.9 13.9 34 311-344 17-50 (120)
218 PF10186 Atg14: UV radiation r 71.9 1.2E+02 0.0026 30.9 17.4 11 620-630 149-159 (302)
219 COG2433 Uncharacterized conser 71.9 41 0.00089 40.2 11.9 52 492-543 450-501 (652)
220 PF06428 Sec2p: GDP/GTP exchan 71.5 10 0.00022 35.5 5.7 80 503-582 2-82 (100)
221 PF05667 DUF812: Protein of un 71.1 2.3E+02 0.005 33.8 29.0 34 380-414 357-390 (594)
222 PF08614 ATG16: Autophagy prot 70.4 56 0.0012 32.8 11.1 25 557-581 157-181 (194)
223 PF11559 ADIP: Afadin- and alp 69.9 1.1E+02 0.0023 29.4 14.5 38 544-581 112-149 (151)
224 PF07106 TBPIP: Tat binding pr 69.8 23 0.00049 34.5 8.0 71 459-537 67-137 (169)
225 PF07798 DUF1640: Protein of u 69.4 1.2E+02 0.0027 30.0 15.5 27 428-454 76-102 (177)
226 PRK10698 phage shock protein P 69.3 1.5E+02 0.0032 30.9 20.2 113 437-558 36-148 (222)
227 PF14662 CCDC155: Coiled-coil 68.7 1.6E+02 0.0034 31.0 19.8 33 376-408 92-124 (193)
228 PRK14011 prefoldin subunit alp 68.3 1.1E+02 0.0025 30.2 12.4 33 491-526 2-34 (144)
229 PF06818 Fez1: Fez1; InterPro 68.3 1.6E+02 0.0035 31.0 15.1 89 439-538 10-102 (202)
230 PF13166 AAA_13: AAA domain 68.2 2.4E+02 0.0052 32.9 22.1 191 276-497 279-471 (712)
231 KOG0249 LAR-interacting protei 67.9 2.8E+02 0.0061 34.5 17.5 45 300-344 60-104 (916)
232 COG5185 HEC1 Protein involved 67.8 2.6E+02 0.0057 33.2 28.7 240 211-481 265-543 (622)
233 KOG0249 LAR-interacting protei 67.7 3.2E+02 0.0068 34.1 27.4 69 459-527 157-234 (916)
234 PF06705 SF-assemblin: SF-asse 67.5 1.6E+02 0.0035 30.5 23.9 75 434-508 36-115 (247)
235 KOG4360 Uncharacterized coiled 67.3 2.8E+02 0.006 33.2 20.1 37 256-292 90-126 (596)
236 PF05010 TACC: Transforming ac 67.2 1.7E+02 0.0037 30.7 25.0 30 427-456 32-61 (207)
237 PF14197 Cep57_CLD_2: Centroso 67.0 54 0.0012 28.9 8.9 64 513-583 2-65 (69)
238 KOG0239 Kinesin (KAR3 subfamil 67.0 75 0.0016 38.2 12.9 43 224-266 178-220 (670)
239 PF10267 Tmemb_cc2: Predicted 66.9 1.9E+02 0.0041 33.1 15.3 35 374-408 207-241 (395)
240 PF00769 ERM: Ezrin/radixin/mo 66.9 1.8E+02 0.0038 30.8 15.2 46 543-588 74-126 (246)
241 PF09728 Taxilin: Myosin-like 65.9 2.1E+02 0.0045 31.3 32.5 76 311-412 72-147 (309)
242 PF15294 Leu_zip: Leucine zipp 64.9 1.6E+02 0.0035 32.3 13.8 136 271-431 27-170 (278)
243 PF10234 Cluap1: Clusterin-ass 64.7 53 0.0011 35.6 10.2 60 373-432 177-236 (267)
244 PF07445 priB_priC: Primosomal 64.5 1.6E+02 0.0035 29.6 13.2 114 372-489 44-163 (173)
245 PF10186 Atg14: UV radiation r 64.3 1.7E+02 0.0037 29.8 17.3 29 560-588 128-156 (302)
246 PRK10884 SH3 domain-containing 63.8 78 0.0017 32.9 10.8 57 380-443 94-150 (206)
247 PF13747 DUF4164: Domain of un 62.5 1.3E+02 0.0027 27.6 10.8 48 493-540 16-63 (89)
248 PRK10246 exonuclease subunit S 61.7 4.2E+02 0.0091 33.4 39.5 25 381-405 532-556 (1047)
249 TIGR01010 BexC_CtrB_KpsE polys 61.4 2.4E+02 0.0052 30.5 15.9 131 381-536 172-305 (362)
250 KOG0979 Structural maintenance 61.1 4.6E+02 0.01 33.7 27.7 64 276-344 635-701 (1072)
251 PF04740 LXG: LXG domain of WX 60.9 1.7E+02 0.0038 28.7 18.5 158 312-489 5-163 (204)
252 PF15456 Uds1: Up-regulated Du 60.2 1.2E+02 0.0026 29.4 10.8 31 381-411 83-113 (124)
253 PRK06975 bifunctional uroporph 59.5 3E+02 0.0064 33.0 15.9 93 482-592 385-480 (656)
254 TIGR01069 mutS2 MutS2 family p 59.2 1.7E+02 0.0038 35.6 14.2 30 103-135 125-154 (771)
255 TIGR00634 recN DNA repair prot 58.9 3.4E+02 0.0074 31.5 21.4 30 381-410 177-206 (563)
256 PF15254 CCDC14: Coiled-coil d 58.2 97 0.0021 38.3 11.7 22 748-769 792-815 (861)
257 TIGR02977 phageshock_pspA phag 57.7 2.3E+02 0.005 29.1 24.7 112 437-557 36-147 (219)
258 PF04129 Vps52: Vps52 / Sac2 f 57.5 3.6E+02 0.0077 31.2 17.3 150 471-631 14-202 (508)
259 COG1382 GimC Prefoldin, chaper 57.4 67 0.0014 31.3 8.5 91 313-411 16-109 (119)
260 PF08172 CASP_C: CASP C termin 57.4 51 0.0011 35.1 8.4 34 313-346 2-35 (248)
261 TIGR00618 sbcc exonuclease Sbc 57.1 4.8E+02 0.01 32.6 36.8 16 390-405 677-692 (1042)
262 PF02841 GBP_C: Guanylate-bind 57.1 1.9E+02 0.004 30.9 12.6 24 385-408 203-226 (297)
263 PF10473 CENP-F_leu_zip: Leuci 57.1 2.1E+02 0.0046 28.5 16.8 63 513-589 70-132 (140)
264 PF15035 Rootletin: Ciliary ro 55.4 2E+02 0.0042 29.5 11.8 83 251-344 90-172 (182)
265 PF12126 DUF3583: Protein of u 55.3 3.3E+02 0.0072 30.6 14.1 71 543-613 67-152 (324)
266 PF10224 DUF2205: Predicted co 55.3 54 0.0012 29.9 7.1 62 270-336 1-63 (80)
267 KOG4302 Microtubule-associated 54.7 4.8E+02 0.011 31.9 23.8 108 279-406 23-130 (660)
268 cd00632 Prefoldin_beta Prefold 54.5 92 0.002 28.4 8.6 93 312-411 8-102 (105)
269 PF12795 MscS_porin: Mechanose 54.4 2.6E+02 0.0057 28.8 23.0 174 385-571 37-212 (240)
270 TIGR01000 bacteriocin_acc bact 54.4 3.6E+02 0.0078 30.3 24.5 13 684-696 356-368 (457)
271 PF03962 Mnd1: Mnd1 family; I 54.2 1.9E+02 0.0041 29.5 11.6 105 222-342 63-167 (188)
272 KOG1574 Predicted cell growth/ 53.9 3.7E+02 0.0079 30.9 14.5 78 465-547 227-305 (375)
273 PF10146 zf-C4H2: Zinc finger- 53.5 1.3E+02 0.0027 32.0 10.5 67 236-302 12-78 (230)
274 PF09731 Mitofilin: Mitochondr 53.4 4.1E+02 0.0089 30.7 24.9 39 306-344 247-286 (582)
275 PF14197 Cep57_CLD_2: Centroso 53.3 1.4E+02 0.003 26.4 9.0 31 377-407 3-33 (69)
276 PF10481 CENP-F_N: Cenp-F N-te 53.2 3.7E+02 0.0079 30.1 17.3 34 311-344 19-52 (307)
277 PRK09343 prefoldin subunit bet 52.7 2.1E+02 0.0046 27.2 11.1 100 222-344 5-112 (121)
278 PRK10698 phage shock protein P 52.3 2.7E+02 0.006 29.0 12.6 21 466-486 33-53 (222)
279 KOG0243 Kinesin-like protein [ 52.2 6.3E+02 0.014 32.5 28.3 63 228-290 448-510 (1041)
280 PRK10884 SH3 domain-containing 52.1 2.6E+02 0.0057 29.1 12.3 61 518-588 95-155 (206)
281 PRK00409 recombination and DNA 51.2 2.9E+02 0.0063 33.8 14.3 21 101-121 128-148 (782)
282 PF10267 Tmemb_cc2: Predicted 50.8 4.4E+02 0.0095 30.3 15.5 96 218-323 223-318 (395)
283 PRK10869 recombination and rep 50.8 4.7E+02 0.01 30.7 22.6 30 382-411 167-196 (553)
284 COG4477 EzrA Negative regulato 50.5 5.3E+02 0.011 31.1 32.8 174 398-588 352-529 (570)
285 PF08826 DMPK_coil: DMPK coile 50.0 53 0.0011 28.6 5.9 47 223-269 3-52 (61)
286 PF11932 DUF3450: Protein of u 49.7 1.8E+02 0.0038 30.3 10.8 109 214-326 42-162 (251)
287 COG4372 Uncharacterized protei 49.5 4.9E+02 0.011 30.5 25.7 30 379-408 88-117 (499)
288 KOG4657 Uncharacterized conser 49.3 3.8E+02 0.0083 29.1 15.0 34 475-508 41-74 (246)
289 PF10481 CENP-F_N: Cenp-F N-te 49.2 4.2E+02 0.0091 29.6 13.9 40 551-590 95-134 (307)
290 PF10498 IFT57: Intra-flagella 49.2 1.5E+02 0.0032 33.2 10.7 63 275-337 292-355 (359)
291 KOG4593 Mitotic checkpoint pro 49.0 6.1E+02 0.013 31.4 34.8 58 388-446 239-296 (716)
292 TIGR02231 conserved hypothetic 48.7 89 0.0019 35.6 9.2 40 305-344 66-105 (525)
293 KOG0239 Kinesin (KAR3 subfamil 48.6 4.6E+02 0.0099 31.9 15.2 71 518-589 243-313 (670)
294 PF05384 DegS: Sensor protein 48.5 3.1E+02 0.0067 27.8 17.5 42 373-414 28-69 (159)
295 PF12072 DUF3552: Domain of un 48.5 3.1E+02 0.0068 27.9 22.2 14 576-589 185-198 (201)
296 TIGR03752 conj_TIGR03752 integ 48.4 93 0.002 36.3 9.2 51 294-344 43-93 (472)
297 cd00890 Prefoldin Prefoldin is 48.2 1.3E+02 0.0028 27.3 8.6 36 311-346 7-42 (129)
298 PF13747 DUF4164: Domain of un 47.7 88 0.0019 28.6 7.3 43 561-604 35-77 (89)
299 PF15294 Leu_zip: Leucine zipp 47.6 4.3E+02 0.0093 29.2 15.6 142 424-581 131-276 (278)
300 PF14915 CCDC144C: CCDC144C pr 47.2 4.6E+02 0.0099 29.4 32.1 47 495-546 203-249 (305)
301 KOG3990 Uncharacterized conser 47.1 59 0.0013 35.5 7.0 44 465-509 226-269 (305)
302 PF14389 Lzipper-MIP1: Leucine 46.9 2.3E+02 0.0049 25.8 9.8 36 309-344 7-42 (88)
303 TIGR01069 mutS2 MutS2 family p 46.8 2.8E+02 0.006 34.0 13.2 42 70-111 221-263 (771)
304 PF01920 Prefoldin_2: Prefoldi 46.8 91 0.002 27.4 7.1 35 312-346 7-41 (106)
305 PF09304 Cortex-I_coil: Cortex 46.0 1.7E+02 0.0037 28.3 9.1 23 486-508 6-32 (107)
306 PF05816 TelA: Toxic anion res 45.7 4.4E+02 0.0095 28.8 30.5 155 426-587 170-331 (333)
307 PF12777 MT: Microtubule-bindi 45.2 4.1E+02 0.0089 29.1 13.1 43 468-510 218-260 (344)
308 PF13094 CENP-Q: CENP-Q, a CEN 44.5 1.3E+02 0.0027 29.3 8.3 76 528-603 32-107 (160)
309 KOG4360 Uncharacterized coiled 44.2 6.5E+02 0.014 30.4 18.9 139 381-540 161-299 (596)
310 PRK00286 xseA exodeoxyribonucl 44.1 5E+02 0.011 29.0 15.9 40 371-410 259-299 (438)
311 PF08172 CASP_C: CASP C termin 44.1 1.9E+02 0.0041 30.9 10.2 94 375-479 2-122 (248)
312 PF06657 Cep57_MT_bd: Centroso 44.0 1.3E+02 0.0029 26.9 7.7 36 311-346 11-46 (79)
313 PRK02292 V-type ATP synthase s 43.7 3.3E+02 0.0072 26.9 13.5 43 565-611 70-112 (188)
314 KOG0982 Centrosomal protein Nu 43.4 2.1E+02 0.0046 33.4 10.9 114 224-344 321-437 (502)
315 PF14728 PHTB1_C: PTHB1 C-term 43.0 4.3E+02 0.0093 29.9 13.1 117 501-630 199-315 (377)
316 COG0497 RecN ATPase involved i 42.8 6.8E+02 0.015 30.2 22.5 62 379-449 164-225 (557)
317 PRK14154 heat shock protein Gr 42.7 1.7E+02 0.0038 30.7 9.4 44 370-414 50-93 (208)
318 PRK11519 tyrosine kinase; Prov 42.6 2.8E+02 0.006 33.3 12.2 96 222-327 261-356 (719)
319 PF12004 DUF3498: Domain of un 42.5 8.3 0.00018 44.6 0.0 110 226-344 374-492 (495)
320 PF12329 TMF_DNA_bd: TATA elem 42.3 1.2E+02 0.0026 26.8 7.1 56 200-256 6-61 (74)
321 PF09403 FadA: Adhesion protei 42.0 3.4E+02 0.0073 26.7 10.6 107 216-338 14-121 (126)
322 PF02050 FliJ: Flagellar FliJ 42.0 2.3E+02 0.0049 24.4 10.9 38 553-590 54-91 (123)
323 KOG4809 Rab6 GTPase-interactin 41.4 7.4E+02 0.016 30.2 25.4 95 311-430 367-468 (654)
324 PF04012 PspA_IM30: PspA/IM30 41.2 3.9E+02 0.0085 26.9 19.9 106 438-552 36-141 (221)
325 PF05278 PEARLI-4: Arabidopsis 40.8 5.3E+02 0.012 28.4 13.9 22 484-505 158-179 (269)
326 PF09304 Cortex-I_coil: Cortex 40.7 3.5E+02 0.0076 26.3 12.5 40 373-412 10-49 (107)
327 PF12329 TMF_DNA_bd: TATA elem 40.6 88 0.0019 27.6 6.0 64 282-346 3-69 (74)
328 PF14362 DUF4407: Domain of un 40.5 4.6E+02 0.0099 27.8 12.3 40 314-353 132-171 (301)
329 PRK15178 Vi polysaccharide exp 39.3 6.8E+02 0.015 29.2 16.8 107 388-505 244-354 (434)
330 PRK09841 cryptic autophosphory 39.2 3.1E+02 0.0068 32.9 12.0 117 218-344 257-373 (726)
331 PRK03947 prefoldin subunit alp 38.6 2E+02 0.0043 27.2 8.5 33 312-344 15-47 (140)
332 PRK03963 V-type ATP synthase s 38.6 4E+02 0.0088 26.4 12.9 45 566-614 72-116 (198)
333 PF14726 RTTN_N: Rotatin, an a 38.0 1.1E+02 0.0024 28.6 6.5 62 579-640 6-70 (98)
334 cd00584 Prefoldin_alpha Prefol 37.9 2E+02 0.0043 26.7 8.3 102 311-412 7-120 (129)
335 KOG3915 Transcription regulato 37.9 2.2E+02 0.0047 33.8 10.0 40 228-267 528-567 (641)
336 PF03999 MAP65_ASE1: Microtubu 37.8 1.2E+02 0.0026 35.7 8.2 88 314-412 88-175 (619)
337 PF03915 AIP3: Actin interacti 37.6 3E+02 0.0064 31.8 11.0 30 315-344 204-233 (424)
338 PF06005 DUF904: Protein of un 37.4 3E+02 0.0066 24.5 9.3 71 370-458 2-72 (72)
339 PF09731 Mitofilin: Mitochondr 37.0 7.2E+02 0.016 28.8 23.8 33 620-654 468-500 (582)
340 PF09738 DUF2051: Double stran 36.5 6E+02 0.013 28.2 12.7 81 440-527 85-165 (302)
341 KOG0018 Structural maintenance 36.5 1.1E+03 0.024 30.8 31.3 60 278-342 698-757 (1141)
342 PF15035 Rootletin: Ciliary ro 36.5 4.9E+02 0.011 26.7 12.1 29 383-411 85-113 (182)
343 PF06810 Phage_GP20: Phage min 36.3 2.6E+02 0.0056 27.8 9.1 57 311-391 14-70 (155)
344 PF13863 DUF4200: Domain of un 36.1 3.5E+02 0.0075 24.8 14.2 22 555-576 85-106 (126)
345 PF05103 DivIVA: DivIVA protei 35.8 8.7 0.00019 35.1 -0.9 43 302-344 17-59 (131)
346 COG1382 GimC Prefoldin, chaper 35.7 4.4E+02 0.0095 25.9 11.4 43 372-414 6-48 (119)
347 TIGR02338 gimC_beta prefoldin, 35.2 2.5E+02 0.0053 26.0 8.3 88 312-409 12-104 (110)
348 PF01991 vATP-synt_E: ATP synt 35.0 4.3E+02 0.0093 25.6 14.7 60 570-637 67-126 (198)
349 COG0711 AtpF F0F1-type ATP syn 34.7 4.6E+02 0.01 25.9 15.3 14 599-612 142-155 (161)
350 TIGR03545 conserved hypothetic 34.6 3.9E+02 0.0084 31.8 11.6 47 463-509 211-257 (555)
351 PF10211 Ax_dynein_light: Axon 33.7 3.3E+02 0.0071 27.8 9.6 24 385-408 126-149 (189)
352 PF02183 HALZ: Homeobox associ 33.6 65 0.0014 26.4 3.8 29 312-340 14-42 (45)
353 PF03915 AIP3: Actin interacti 33.5 8.2E+02 0.018 28.4 15.0 19 464-482 220-238 (424)
354 PF06008 Laminin_I: Laminin Do 33.4 5.8E+02 0.013 26.7 25.0 101 282-407 15-115 (264)
355 PF02050 FliJ: Flagellar FliJ 33.2 3.2E+02 0.0069 23.5 13.4 94 316-432 4-97 (123)
356 COG4026 Uncharacterized protei 33.1 1.9E+02 0.0041 31.5 8.0 44 538-581 143-186 (290)
357 TIGR01000 bacteriocin_acc bact 33.0 7.6E+02 0.016 27.8 22.0 29 562-590 288-316 (457)
358 TIGR01010 BexC_CtrB_KpsE polys 32.9 4.9E+02 0.011 28.2 11.3 33 228-260 170-202 (362)
359 PTZ00234 variable surface prot 32.9 50 0.0011 37.8 4.1 14 763-776 339-352 (433)
360 PRK00409 recombination and DNA 32.6 7.2E+02 0.016 30.6 13.7 47 70-116 226-273 (782)
361 PF07889 DUF1664: Protein of u 32.5 3.6E+02 0.0079 26.5 9.3 77 208-284 30-110 (126)
362 TIGR00414 serS seryl-tRNA synt 32.4 2.3E+02 0.005 32.0 9.1 85 263-355 30-114 (418)
363 smart00502 BBC B-Box C-termina 32.1 3.5E+02 0.0076 23.7 13.7 58 427-484 9-66 (127)
364 PF15188 CCDC-167: Coiled-coil 31.7 1.4E+02 0.0031 27.6 6.0 24 385-408 42-65 (85)
365 PF00170 bZIP_1: bZIP transcri 31.7 88 0.0019 26.2 4.4 33 312-344 28-60 (64)
366 TIGR03319 YmdA_YtgF conserved 31.4 9.2E+02 0.02 28.4 22.1 33 602-634 182-214 (514)
367 PRK14127 cell division protein 31.4 1.9E+02 0.0041 27.8 7.0 46 301-346 21-66 (109)
368 PF15397 DUF4618: Domain of un 31.4 7.3E+02 0.016 27.2 20.0 150 374-539 76-230 (258)
369 COG4026 Uncharacterized protei 31.4 1.9E+02 0.0041 31.5 7.7 78 236-339 129-206 (290)
370 PF04012 PspA_IM30: PspA/IM30 31.2 5.6E+02 0.012 25.8 19.8 38 376-413 34-71 (221)
371 PF07989 Microtub_assoc: Micro 30.9 3.7E+02 0.0081 24.1 8.4 29 422-450 4-32 (75)
372 KOG4460 Nuclear pore complex, 30.9 1E+03 0.022 29.2 13.9 31 379-409 709-739 (741)
373 PRK08475 F0F1 ATP synthase sub 30.8 5.4E+02 0.012 25.5 15.0 16 471-486 49-64 (167)
374 COG4717 Uncharacterized conser 30.6 9E+02 0.02 30.9 13.9 147 440-591 182-331 (984)
375 PF04518 Effector_1: Effector 30.4 60 0.0013 36.8 4.1 94 68-161 204-306 (379)
376 PF12761 End3: Actin cytoskele 30.3 5.1E+02 0.011 27.4 10.4 110 366-498 83-194 (195)
377 PF05461 ApoL: Apolipoprotein 30.0 5.4E+02 0.012 28.5 11.1 81 507-590 13-93 (313)
378 TIGR01554 major_cap_HK97 phage 29.8 85 0.0019 34.1 5.1 63 280-342 2-66 (378)
379 PF07334 IFP_35_N: Interferon- 29.8 54 0.0012 29.9 3.0 28 319-346 2-29 (76)
380 KOG1003 Actin filament-coating 29.8 7.2E+02 0.016 26.6 20.0 80 513-592 113-192 (205)
381 KOG0288 WD40 repeat protein Ti 29.7 9.9E+02 0.021 28.2 13.3 32 313-344 16-47 (459)
382 KOG2180 Late Golgi protein sor 29.6 8.1E+02 0.018 30.6 13.1 51 577-627 115-181 (793)
383 KOG4460 Nuclear pore complex, 29.5 1.1E+03 0.025 28.8 20.3 91 479-592 634-725 (741)
384 KOG4637 Adaptor for phosphoino 29.5 9.7E+02 0.021 28.0 18.7 154 473-636 134-318 (464)
385 PF04508 Pox_A_type_inc: Viral 29.1 57 0.0012 23.9 2.5 20 465-484 2-21 (23)
386 PF14992 TMCO5: TMCO5 family 29.0 8.4E+02 0.018 27.1 15.2 74 266-339 3-92 (280)
387 PF04375 HemX: HemX; InterPro 28.4 8.6E+02 0.019 27.1 15.2 20 573-592 170-189 (372)
388 smart00338 BRLZ basic region l 28.3 1.1E+02 0.0023 25.7 4.4 34 311-344 27-60 (65)
389 TIGR00237 xseA exodeoxyribonuc 28.2 9.3E+02 0.02 27.4 16.4 39 372-410 255-294 (432)
390 TIGR03495 phage_LysB phage lys 28.1 5.9E+02 0.013 25.4 9.9 24 565-588 82-109 (135)
391 PF08581 Tup_N: Tup N-terminal 28.1 4.6E+02 0.01 23.9 9.4 31 560-590 41-71 (79)
392 PF04977 DivIC: Septum formati 28.1 1.2E+02 0.0026 25.3 4.7 34 311-344 18-51 (80)
393 PF15372 DUF4600: Domain of un 27.9 2.3E+02 0.0051 28.1 7.2 72 255-344 14-85 (129)
394 PF03961 DUF342: Protein of un 27.8 4.1E+02 0.0088 30.0 10.0 32 313-344 330-361 (451)
395 PF02841 GBP_C: Guanylate-bind 27.6 5E+02 0.011 27.7 10.2 51 244-300 227-277 (297)
396 KOG1962 B-cell receptor-associ 27.3 3.5E+02 0.0075 28.9 8.7 25 273-297 154-178 (216)
397 PF06156 DUF972: Protein of un 27.2 2.4E+02 0.0051 26.8 6.9 34 377-410 20-53 (107)
398 PF01920 Prefoldin_2: Prefoldi 27.1 4.3E+02 0.0094 23.2 10.8 23 429-451 9-31 (106)
399 TIGR03321 alt_F1F0_F0_B altern 26.8 7.5E+02 0.016 25.8 19.4 38 627-665 184-222 (246)
400 smart00502 BBC B-Box C-termina 26.8 4.4E+02 0.0095 23.1 15.5 62 544-606 57-119 (127)
401 PF05529 Bap31: B-cell recepto 26.7 1.9E+02 0.0041 28.8 6.5 31 268-298 152-182 (192)
402 KOG2991 Splicing regulator [RN 26.6 9.4E+02 0.02 26.9 22.1 122 250-406 83-204 (330)
403 PF04977 DivIC: Septum formati 26.5 1.3E+02 0.0028 25.1 4.6 32 375-406 20-51 (80)
404 COG4423 Uncharacterized protei 26.2 2.9E+02 0.0062 25.7 6.9 63 539-602 10-72 (81)
405 PRK10869 recombination and rep 25.7 1.1E+03 0.025 27.6 22.4 14 110-123 26-39 (553)
406 PF13805 Pil1: Eisosome compon 25.2 9.5E+02 0.021 26.5 14.7 63 307-407 97-159 (271)
407 PF13094 CENP-Q: CENP-Q, a CEN 25.2 6.4E+02 0.014 24.5 11.1 38 470-507 121-158 (160)
408 PF09766 FimP: Fms-interacting 25.0 5E+02 0.011 28.9 9.9 115 228-344 12-142 (355)
409 PF15450 DUF4631: Domain of un 25.0 1.3E+03 0.028 27.9 23.7 145 256-430 287-431 (531)
410 PF10212 TTKRSYEDQ: Predicted 24.8 1E+03 0.023 28.5 12.7 93 471-580 420-516 (518)
411 COG5022 Myosin heavy chain [Cy 24.8 1.8E+03 0.04 29.7 17.0 41 261-301 787-827 (1463)
412 PF08581 Tup_N: Tup N-terminal 24.8 5.4E+02 0.012 23.5 10.8 72 388-477 6-77 (79)
413 COG4913 Uncharacterized protei 24.6 1.5E+03 0.034 28.8 17.0 85 434-522 618-704 (1104)
414 PF13949 ALIX_LYPXL_bnd: ALIX 24.6 8E+02 0.017 25.4 30.4 143 226-404 27-169 (296)
415 PF09325 Vps5: Vps5 C terminal 24.6 7.1E+02 0.015 24.8 23.2 24 427-450 26-49 (236)
416 PRK03947 prefoldin subunit alp 24.5 6.1E+02 0.013 24.0 11.4 29 561-589 104-132 (140)
417 TIGR03495 phage_LysB phage lys 24.3 7.2E+02 0.016 24.8 10.0 30 517-546 62-91 (135)
418 PF12443 AKNA: AT-hook-contain 24.2 37 0.0008 32.5 1.0 47 560-608 47-93 (106)
419 PF05700 BCAS2: Breast carcino 24.2 4.6E+02 0.0099 27.2 8.9 83 312-417 138-220 (221)
420 PF06637 PV-1: PV-1 protein (P 24.2 1.2E+03 0.026 27.3 21.9 77 268-344 226-319 (442)
421 COG1570 XseA Exonuclease VII, 24.1 1.2E+03 0.026 27.4 15.6 40 371-410 260-300 (440)
422 smart00806 AIP3 Actin interact 23.8 1.2E+03 0.027 27.3 19.7 41 388-434 252-292 (426)
423 KOG2264 Exostosin EXT1L [Signa 23.7 3E+02 0.0065 33.5 8.2 34 311-344 80-113 (907)
424 TIGR02894 DNA_bind_RsfA transc 23.6 3E+02 0.0066 28.3 7.3 34 312-345 120-153 (161)
425 PF06785 UPF0242: Uncharacteri 23.4 1.2E+03 0.026 27.0 15.4 73 373-449 86-158 (401)
426 PF05103 DivIVA: DivIVA protei 23.2 45 0.00097 30.5 1.4 26 555-580 97-122 (131)
427 PF07544 Med9: RNA polymerase 23.2 4.6E+02 0.01 23.5 7.6 66 268-342 15-80 (83)
428 PF07227 DUF1423: Protein of u 23.1 1.3E+03 0.028 27.3 13.2 66 372-449 350-415 (446)
429 PRK09430 djlA Dna-J like membr 23.0 3.1E+02 0.0067 29.3 7.6 56 581-641 111-174 (267)
430 TIGR02231 conserved hypothetic 22.9 7.4E+02 0.016 28.4 11.0 26 464-489 71-96 (525)
431 KOG0962 DNA repair protein RAD 22.9 1.9E+03 0.041 29.2 35.6 62 476-542 1013-1074(1294)
432 KOG0804 Cytoplasmic Zn-finger 22.9 8.5E+02 0.018 29.0 11.3 29 551-579 382-410 (493)
433 KOG1937 Uncharacterized conser 22.7 1.4E+03 0.03 27.4 24.4 21 430-450 260-280 (521)
434 PRK10920 putative uroporphyrin 22.6 1.2E+03 0.026 26.8 13.0 20 573-592 176-195 (390)
435 KOG2072 Translation initiation 22.5 1.7E+03 0.037 28.6 29.3 18 495-512 768-785 (988)
436 COG1463 Ttg2C ABC-type transpo 22.5 1.1E+03 0.023 26.1 12.0 18 493-510 181-198 (359)
437 PF05529 Bap31: B-cell recepto 22.1 6.6E+02 0.014 25.0 9.3 34 465-498 155-188 (192)
438 PF03148 Tektin: Tektin family 22.0 1.1E+03 0.025 26.3 33.5 29 228-256 53-81 (384)
439 PF05377 FlaC_arch: Flagella a 21.9 1.7E+02 0.0037 25.4 4.4 30 312-341 9-38 (55)
440 KOG3091 Nuclear pore complex, 21.8 1.4E+03 0.031 27.4 17.4 39 373-411 335-373 (508)
441 PF04201 TPD52: Tumour protein 21.7 1.8E+02 0.0039 29.8 5.3 31 560-590 31-61 (162)
442 PF04102 SlyX: SlyX; InterPro 21.7 1.7E+02 0.0038 25.3 4.5 51 292-347 5-55 (69)
443 KOG0979 Structural maintenance 21.7 1.9E+03 0.041 28.7 24.5 36 377-412 193-228 (1072)
444 PF08703 PLC-beta_C: PLC-beta 21.5 9.5E+02 0.021 25.1 10.8 90 222-327 50-144 (185)
445 PRK13169 DNA replication intia 21.4 5.1E+02 0.011 25.0 7.9 56 373-446 2-57 (110)
446 cd00179 SynN Syntaxin N-termin 21.2 6.8E+02 0.015 23.4 11.7 54 478-534 9-62 (151)
447 KOG2211 Predicted Golgi transp 21.2 1.7E+03 0.037 28.0 25.0 41 466-506 123-163 (797)
448 PF09728 Taxilin: Myosin-like 21.2 1.1E+03 0.024 25.9 28.9 21 279-299 24-44 (309)
449 KOG0288 WD40 repeat protein Ti 21.2 1.4E+03 0.031 27.0 15.1 38 376-413 17-54 (459)
450 PF13801 Metal_resist: Heavy-m 21.1 4.2E+02 0.0091 22.9 6.9 73 563-637 50-125 (125)
451 PF14712 Snapin_Pallidin: Snap 21.0 5.4E+02 0.012 22.6 7.6 77 310-406 14-91 (92)
452 PTZ00009 heat shock 70 kDa pro 20.9 1.2E+03 0.025 27.9 12.4 130 515-678 514-646 (653)
453 PF05600 DUF773: Protein of un 20.8 8.8E+02 0.019 28.5 11.2 88 494-587 406-496 (507)
454 KOG0982 Centrosomal protein Nu 20.8 1.5E+03 0.032 27.1 19.7 65 492-559 297-368 (502)
455 KOG0796 Spliceosome subunit [R 20.7 1.3E+03 0.027 26.3 12.4 119 502-637 76-205 (319)
456 PF06730 FAM92: FAM92 protein; 20.7 9.6E+02 0.021 25.8 10.5 80 423-504 92-187 (219)
457 PRK05759 F0F1 ATP synthase sub 20.4 7.5E+02 0.016 23.5 12.4 20 470-489 30-49 (156)
458 KOG2391 Vacuolar sorting prote 20.4 2.7E+02 0.0058 31.8 6.7 62 280-342 217-278 (365)
459 PF06008 Laminin_I: Laminin Do 20.2 1E+03 0.022 25.0 25.4 46 367-412 12-57 (264)
460 PF02601 Exonuc_VII_L: Exonucl 20.2 1.1E+03 0.023 25.2 15.2 41 372-412 143-184 (319)
461 PLN03229 acetyl-coenzyme A car 20.1 1.8E+03 0.039 27.9 19.3 106 220-327 478-614 (762)
No 1
>PRK02224 chromosome segregation protein; Provisional
Probab=98.90 E-value=3.2e-05 Score=89.14 Aligned_cols=76 Identities=16% Similarity=0.247 Sum_probs=45.4
Q ss_pred cchhHHHHHHHHHhhhHHHHHHHHHHhccc--ccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCC
Q 003961 274 KTSIEITEMRKELNGKLSELRRLQMELNRR--EDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNE 349 (783)
Q Consensus 274 kts~~~~~~~~el~ek~sei~rlq~~l~~~--e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~ 349 (783)
.....+..+..++.....++..+...|..- +-.+..+.++.++..+..+......++..+..+...|+.++..+..
T Consensus 374 ~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~ 451 (880)
T PRK02224 374 EAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEA 451 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444444444444444444444444321 1123335677888888888888888888888888888888754333
No 2
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.89 E-value=0.00011 Score=85.28 Aligned_cols=13 Identities=23% Similarity=0.417 Sum_probs=10.0
Q ss_pred cCchhHHHHHHHH
Q 003961 679 ENQSFADLWVDFL 691 (783)
Q Consensus 679 eneSFADLWVEFL 691 (783)
++..-|..||+||
T Consensus 555 ~~~~~a~~~i~~l 567 (1164)
T TIGR02169 555 EDDAVAKEAIELL 567 (1164)
T ss_pred CCHHHHHHHHHHH
Confidence 4566788899996
No 3
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.78 E-value=4.6e-05 Score=86.19 Aligned_cols=240 Identities=19% Similarity=0.285 Sum_probs=135.1
Q ss_pred HHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCcccchhHHHHHHHHHhhhHHHHHHHHHHhcccccC--C
Q 003961 230 TRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDG--D 307 (783)
Q Consensus 230 i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e--~ 307 (783)
...|+.+.++-+..+..++..|...++.++.|+++...+.-.......+...+..++.+....|+.|..++..-... +
T Consensus 159 ~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E 238 (546)
T PF07888_consen 159 NEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKE 238 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666666777777777777777777777776666677777777777777777777777554321111 0
Q ss_pred cchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHH
Q 003961 308 ANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKD 387 (783)
Q Consensus 308 ~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~e 387 (783)
..-.+..++.+...++.....|+. .|...+..++...+. .......+..|+.+
T Consensus 239 ~e~~~~~lk~~~~elEq~~~eLk~---rLk~~~~~~~~~~~~------------------------~~~~~~e~e~Lkeq 291 (546)
T PF07888_consen 239 QEKELDKLKELKAELEQLEAELKQ---RLKETVVQLKQEETQ------------------------AQQLQQENEALKEQ 291 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhh------------------------hhhHHHHHHHHHHH
Confidence 111233333332222322222332 222222333311110 11122223344444
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHhhhchH
Q 003961 388 LKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRE---NNEYQRAQILHLENVLKQTLAKQEEFKMMNHS 464 (783)
Q Consensus 388 L~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELre---enE~~R~~Is~lEraLK~~~a~qeelk~~n~~ 464 (783)
|..++.-...+.++..-|+.-|-+. .+-+| +++-||+. +++..+.++....-+|+...++....+.....
T Consensus 292 Lr~~qe~lqaSqq~~~~L~~EL~~~------~~~RD-rt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~qEk~~l~~ 364 (546)
T PF07888_consen 292 LRSAQEQLQASQQEAELLRKELSDA------VNVRD-RTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQEKQALQH 364 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455555555544333 22333 56677776 57777888888888888877776666555444
Q ss_pred HHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHH
Q 003961 465 EIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQ 503 (783)
Q Consensus 465 E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgq 503 (783)
.+...+..|++|+..+.-.-+.+.-+..|...|+.=|++
T Consensus 365 ~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~k 403 (546)
T PF07888_consen 365 SAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGK 403 (546)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567788888877766555666677777888887775
No 4
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.69 E-value=0.00018 Score=83.02 Aligned_cols=12 Identities=25% Similarity=0.238 Sum_probs=5.0
Q ss_pred CHHHHHHhhhcc
Q 003961 631 SDEDKQRIGMAQ 642 (783)
Q Consensus 631 SDEEK~riGL~~ 642 (783)
|-.+|.+++|+.
T Consensus 1091 S~g~~~~~~l~~ 1102 (1179)
T TIGR02168 1091 SGGEKALTALAL 1102 (1179)
T ss_pred CccHHHHHHHHH
Confidence 334444444433
No 5
>PRK01156 chromosome segregation protein; Provisional
Probab=98.64 E-value=0.00049 Score=80.12 Aligned_cols=91 Identities=14% Similarity=0.227 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCC----cccCC-CCCCCCcCCCCCCCCCCCChhHHHHHHHHHH
Q 003961 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNE----KIFPD-ASEYPSRLDGMVSSESFPGKEEMEQSLQKLE 385 (783)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~----k~~~d-a~e~~~r~~d~~~~~sf~~kEeme~slq~L~ 385 (783)
.++.++..++.|.++...|...+.+|...+..++++.+. .+-|. .+++ +.+...-+ -..+...+..+.
T Consensus 410 ~~~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~~~~~l~~~~~Cp~c~~~~-----~~e~~~e~--i~~~~~~i~~l~ 482 (895)
T PRK01156 410 ELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTL-----GEEKSNHI--INHYNEKKSRLE 482 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcC-----ChhhHHHH--HHHHHHHHHHHH
Confidence 346677778888888888888888888877777754331 11111 1111 11111000 224445566777
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Q 003961 386 KDLKETCSERDKALQELTRLKQH 408 (783)
Q Consensus 386 ~eL~e~~~E~dKa~kEL~RLRqH 408 (783)
.++.+...+..+...++.+|+..
T Consensus 483 ~~i~~l~~~~~~l~~~~~~~~~~ 505 (895)
T PRK01156 483 EKIREIEIEVKDIDEKIVDLKKR 505 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777665554
No 6
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.64 E-value=7.9e-05 Score=90.65 Aligned_cols=164 Identities=15% Similarity=0.195 Sum_probs=88.4
Q ss_pred HhhhHHhHhHhhhhHHHHhhhhHHHhhhhhccccchhhhhhhhHHHHHhhhcCCCccCCCCcccCCCCCCCCCcccchhh
Q 003961 83 LQESEAEIKALSVNYAALLKEKEEQISRLNGEYGLLKQNLDATNAALNAFRNGNSKASSNGINIPKGSGDLSPSRQHKLT 162 (783)
Q Consensus 83 lq~seaeikals~nyaallkekedqi~rl~~engslk~nl~~t~~al~~~r~~~~~~s~n~~~~~kg~~d~sp~r~~~~~ 162 (783)
+..+..|+..+--||+.-+.+++.++.++..+...++.-+..+....+.-..+..+-.+.- ..|.
T Consensus 296 l~~s~eEL~~ll~~f~~~~~e~~~~~~~le~e~~~l~~el~~l~~~~~~l~~e~gkl~~~~-------------~~~~-- 360 (1311)
T TIGR00606 296 FQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQA-------------DRHQ-- 360 (1311)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHH--
Confidence 3446788899999999999999999999999999998888877776655554433322211 1111
Q ss_pred hhhccCCcccccccCccc--CCCCCCCccccchhhhhhccccchhhHHhhHHhhhchhHHHHHHHhHHHHHHHHHHHHHh
Q 003961 163 AQVKNRHAGHQLQNGFSK--QDGVSNGSHALQTEVVQSSKMQGKEKELADLLEEKNRSLAAERAAYESQTRQLRMELEQQ 240 (783)
Q Consensus 163 ~q~k~~~~~~~~~ng~~k--~~g~~~~~~~~~~~~~~~~~~~~~~~e~~d~le~~~~~~aa~qa~~~~~i~~l~~el~~~ 240 (783)
.+...|. ..+..=..+ .+|+.++.....+...+ ...+-.++...+..+...+..+..+++.+...|..-
T Consensus 361 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~e~~~~~~~~q~~L~ei 431 (1311)
T TIGR00606 361 EHIRARD--SLIQSLATRLELDGFERGPFSERQIKNF-------HTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEI 431 (1311)
T ss_pred HHHHHHH--HHHHHHHHhcCcCCCCCcccchHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 000000111 23333332222211111 122445556666666667777777777777666666
Q ss_pred hhhhhhHHHhH-------HHHHhhchHHHHHHhhccc
Q 003961 241 RNKFADVQLKL-------QEEQRLNESFQDELKSLKM 270 (783)
Q Consensus 241 ~~k~~~~~~~l-------qee~k~n~~fqe~l~~lk~ 270 (783)
+.+++.....+ +...+.-+.++.+|..+..
T Consensus 432 ~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~~~~~ 468 (1311)
T TIGR00606 432 RDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEG 468 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 66655444333 3333444445555554433
No 7
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.63 E-value=0.0007 Score=78.90 Aligned_cols=33 Identities=12% Similarity=0.229 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003961 376 EMEQSLQKLEKDLKETCSERDKALQELTRLKQH 408 (783)
Q Consensus 376 eme~slq~L~~eL~e~~~E~dKa~kEL~RLRqH 408 (783)
.++..+..++..+.....+......++..|++.
T Consensus 291 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 323 (1164)
T TIGR02169 291 RVKEKIGELEAEIASLERSIAEKERELEDAEER 323 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444445555555444444
No 8
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.63 E-value=0.00034 Score=88.10 Aligned_cols=67 Identities=13% Similarity=0.163 Sum_probs=38.6
Q ss_pred HHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhh---hhhhhHHhHHHHHHHHHHHHHHHhhccCCcc
Q 003961 530 EYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKG---RANKLEEDNAKLRLAVEQSMTRLNRMSVDSD 596 (783)
Q Consensus 530 ~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~---~~~KL~eDn~kLR~ALeqsl~RL~~ms~dsD 596 (783)
..++.-...++...+.|..+...-+..+....+... .+.+...++++.+++++..+.-|+.++.+.+
T Consensus 1189 ~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~ 1258 (1930)
T KOG0161|consen 1189 DSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQE 1258 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555444445555444443 3455667888888888877777776554333
No 9
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.62 E-value=0.00071 Score=82.62 Aligned_cols=65 Identities=8% Similarity=0.115 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhh-------HhhHHHHHHHHHHh
Q 003961 276 SIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSL-------KMEKTELVAALEKN 343 (783)
Q Consensus 276 s~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tl-------k~~~~eL~a~L~~~ 343 (783)
-..|..+..++..-...|..|..++..... +.+++.|+..+..++++...+ ..++..+...|..+
T Consensus 791 v~~i~r~~~ei~~l~~qie~l~~~l~~~~~---~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 791 VTIMERFQMELKDVERKIAQQAAKLQGSDL---DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778888778888888888775444 125555555555555555544 44444444444444
No 10
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.60 E-value=0.00075 Score=81.58 Aligned_cols=43 Identities=35% Similarity=0.335 Sum_probs=34.5
Q ss_pred ccccchhhhh-hhhHHHHHhhhcCCCccCCCCcccCCCCCCCCC
Q 003961 113 GEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSGDLSP 155 (783)
Q Consensus 113 ~engslk~nl-~~t~~al~~~r~~~~~~s~n~~~~~kg~~d~sp 155 (783)
+=|||=|-|+ ||..-+|-....-+.|++.-.-.+-+|++...|
T Consensus 31 GPNGSGKSNI~DAi~fVLG~~s~k~lRa~~~~DlIf~g~~~r~~ 74 (1163)
T COG1196 31 GPNGSGKSNIVDAIRFVLGEQSAKNLRASKMSDLIFAGSGNRKP 74 (1163)
T ss_pred CCCCCchHHHHHHHHHHhCcchhhhhhccCCcceeeCCCCCCCC
Confidence 4599999996 588888888878888888877777788888555
No 11
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.59 E-value=0.00069 Score=78.37 Aligned_cols=43 Identities=23% Similarity=0.146 Sum_probs=24.2
Q ss_pred hhhhhccccchhhhhh-hhHHHHHhhhcCCCccCCCCcccCCCC
Q 003961 108 ISRLNGEYGLLKQNLD-ATNAALNAFRNGNSKASSNGINIPKGS 150 (783)
Q Consensus 108 i~rl~~engslk~nl~-~t~~al~~~r~~~~~~s~n~~~~~kg~ 150 (783)
+.-+-..|||=|-||= +...+|.......-|++.-+..+..|.
T Consensus 25 ~~~i~G~NGsGKS~ll~ai~~~lg~~~~~~~r~~~~~~~i~~g~ 68 (1179)
T TIGR02168 25 ITGIVGPNGCGKSNIVDAIRWVLGEQSAKALRGGKMEDVIFNGS 68 (1179)
T ss_pred cEEEECCCCCChhHHHHHHHHHHcCCchhhhhhccchhhhcCCC
Confidence 4456689999999975 556666443333334443333333343
No 12
>PRK02224 chromosome segregation protein; Provisional
Probab=98.56 E-value=0.00037 Score=80.64 Aligned_cols=82 Identities=18% Similarity=0.180 Sum_probs=39.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhch--HHHHh-------hHHHHHhhhhhHHHhHHHHHhhhhhHh
Q 003961 425 KIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNH--SEIQK-------SKEIIDGLNNKLANCMRTIEAKNVELL 495 (783)
Q Consensus 425 k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~--~E~~~-------ske~iedL~~~L~~~mealeAKnvEl~ 495 (783)
.++++++........++..++..+.......+.++.... .++.. +...++++...+...-+.++.-..++.
T Consensus 468 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~e~l~~~~~~~~~l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~ 547 (880)
T PRK02224 468 ETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAA 547 (880)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455666655555555666666655554443333322211 11112 222333333444444444444455666
Q ss_pred hHHHHHHHHHH
Q 003961 496 NLQTALGQYFA 506 (783)
Q Consensus 496 NLQtALgqfqA 506 (783)
.|...+.+|-.
T Consensus 548 ~l~~~~~~~~~ 558 (880)
T PRK02224 548 ELEAEAEEKRE 558 (880)
T ss_pred HHHHHHHHHHH
Confidence 66666666654
No 13
>PRK03918 chromosome segregation protein; Provisional
Probab=98.40 E-value=0.0065 Score=70.25 Aligned_cols=88 Identities=25% Similarity=0.291 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHHHhHH
Q 003961 314 NLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKETCS 393 (783)
Q Consensus 314 sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e~~~ 393 (783)
.+...+..|+.+...++..+.+|...+..++.. ...-|. ..........--....+...+..|++++..+..
T Consensus 402 ~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~~~--~~~Cp~------c~~~L~~~~~~el~~~~~~ei~~l~~~~~~l~~ 473 (880)
T PRK03918 402 EIEEEISKITARIGELKKEIKELKKAIEELKKA--KGKCPV------CGRELTEEHRKELLEEYTAELKRIEKELKEIEE 473 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCC------CCCcCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666777777777777666632 122232 111111110000113567778888888888888
Q ss_pred HHHHHHHHHHHHHHHH
Q 003961 394 ERDKALQELTRLKQHL 409 (783)
Q Consensus 394 E~dKa~kEL~RLRqHL 409 (783)
+..+..+++..+++.+
T Consensus 474 ~~~~l~~~~~~~~~~~ 489 (880)
T PRK03918 474 KERKLRKELRELEKVL 489 (880)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888775543
No 14
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.36 E-value=0.001 Score=77.39 Aligned_cols=199 Identities=24% Similarity=0.331 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHHHhHH
Q 003961 314 NLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKETCS 393 (783)
Q Consensus 314 sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e~~~ 393 (783)
++|..|.+|+++|+.|...+.+|.....+= + ++++.|++-|.+-+.
T Consensus 457 ~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~D------------------------------K----q~l~~LEkrL~eE~~ 502 (697)
T PF09726_consen 457 SLKSELSQLRQENEQLQNKLQNLVQARQQD------------------------------K----QSLQQLEKRLAEERR 502 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------H----HHHHHHHHHHHHHHH
Confidence 788889999999998888877665433222 2 237789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh-hhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHH
Q 003961 394 ERDKALQELTRLKQHLIEKAQEESEK-MDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEI 472 (783)
Q Consensus 394 E~dKa~kEL~RLRqHLLe~E~Ee~ek-mded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~ 472 (783)
-+..++++|...|.+-...|+-.... +-.. .... +-.|.||..+.+||.++++-... + ....++
T Consensus 503 ~R~~lEkQL~eErk~r~~ee~~aar~~~~~~--~~r~--e~~e~~r~r~~~lE~E~~~lr~e---l--------k~kee~ 567 (697)
T PF09726_consen 503 QRASLEKQLQEERKARKEEEEKAARALAQAQ--ATRQ--ECAESCRQRRRQLESELKKLRRE---L--------KQKEEQ 567 (697)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhccccch--hccc--hhHHHHHHHHHHHHHHHHHHHHH---H--------HHHHHH
Confidence 99999999999998755433211000 0000 0000 23556677777777777765221 1 111122
Q ss_pred HHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHH
Q 003961 473 IDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEI-EAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILV 551 (783)
Q Consensus 473 iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~-EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~ 551 (783)
+..|..++ ..|..|..|. .-.|-|...|++.++++.+|...|.+ |. +=|-++..
T Consensus 568 ~~~~e~~~------------------~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsa-----Et--riKldLfs 622 (697)
T PF09726_consen 568 IRELESEL------------------QELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSA-----ET--RIKLDLFS 622 (697)
T ss_pred HHHHHHHH------------------HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhH-----HH--HHHHHHHH
Confidence 22221111 3445553332 23578999999999999999988754 33 23556778
Q ss_pred hhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHH
Q 003961 552 KLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMT 586 (783)
Q Consensus 552 KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~ 586 (783)
.|+.+.+.+......+.+=+.++.-|+..+.+-|-
T Consensus 623 aLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a 657 (697)
T PF09726_consen 623 ALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA 657 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88889999988888888888888888887655443
No 15
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.34 E-value=0.0057 Score=77.70 Aligned_cols=158 Identities=30% Similarity=0.418 Sum_probs=90.1
Q ss_pred hhhchhHHHHHHHhHHHHHHHHHHHHHhhhhhhhHH---HhHHHHHhhchHHHHHHhhcccCcccchhHHHHHHHHHhhh
Q 003961 213 EEKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQ---LKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGK 289 (783)
Q Consensus 213 e~~~~~~aa~qa~~~~~i~~l~~el~~~~~k~~~~~---~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek 289 (783)
+++..+++-.-+.++.++..|...|+++.....++. ++|.-+- +-+|+.+..++ ....++.++|--|
T Consensus 1005 eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el---~~~~e~~~~~~-------~~~~el~~~l~kk 1074 (1930)
T KOG0161|consen 1005 EEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGEL---KDLQESIEELK-------KQKEELDNQLKKK 1074 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHH-------HHHHHHHHHHHHH
Confidence 344444555555555555555555555544444443 3333333 23333333322 2344555666666
Q ss_pred HHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCC
Q 003961 290 LSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSE 369 (783)
Q Consensus 290 ~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~ 369 (783)
.+|+.++|.++ +.++..+..+.+....|..++.+|...|+.-|++.. ..++
T Consensus 1075 e~El~~l~~k~------------e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~---------------K~ek-- 1125 (1930)
T KOG0161|consen 1075 ESELSQLQSKL------------EDEQAEVAQLQKQIKELEARIKELEEELEAERASRA---------------KAER-- 1125 (1930)
T ss_pred HHHHHHHHHHh------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHH--
Confidence 66666666554 456677777888888888888888888888875410 1222
Q ss_pred CCCChhHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHH
Q 003961 370 SFPGKEEMEQSLQKLEKDLKETC-------SERDKALQELTRLKQHLIEK 412 (783)
Q Consensus 370 sf~~kEeme~slq~L~~eL~e~~-------~E~dKa~kEL~RLRqHLLe~ 412 (783)
...+|...++.|..+|.++- .-.-|-..|+.+||+-|-+.
T Consensus 1126 ---~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee 1172 (1930)
T KOG0161|consen 1126 ---QRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEE 1172 (1930)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777776661 11234557788888875443
No 16
>PRK03918 chromosome segregation protein; Provisional
Probab=98.03 E-value=0.056 Score=62.74 Aligned_cols=84 Identities=18% Similarity=0.335 Sum_probs=47.3
Q ss_pred HHHHHhhcccCcccchhHHHHHHHHHhhhHHHHHHHHHH---hccccc-----------CCcchHHHHHHHHHHHHHHhh
Q 003961 261 FQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQME---LNRRED-----------GDANDVVENLKRVVATLEKEN 326 (783)
Q Consensus 261 fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~---l~~~e~-----------e~~~~~~~sLk~~~~~L~kEn 326 (783)
+..++..+.-..+.....+.+++.++.+-..+|..|+.. |.+... ++-...+..+...+..|+++.
T Consensus 389 l~~~l~~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~~~~~~Cp~c~~~L~~~~~~el~~~~~~ei~~l~~~~ 468 (880)
T PRK03918 389 LEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKEL 468 (880)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444555555555555444444334332 332211 111234577888888888888
Q ss_pred hhhHhhHHHHHHHHHHhc
Q 003961 327 NSLKMEKTELVAALEKNR 344 (783)
Q Consensus 327 ~tlk~~~~eL~a~L~~~r 344 (783)
..++.++..|+..+...+
T Consensus 469 ~~l~~~~~~l~~~~~~~~ 486 (880)
T PRK03918 469 KEIEEKERKLRKELRELE 486 (880)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888777643
No 17
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.02 E-value=0.071 Score=63.37 Aligned_cols=92 Identities=24% Similarity=0.328 Sum_probs=64.2
Q ss_pred HHhhchHHHHHHhhcccCcccchhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcc--------hHHHHHHHHHHHHHHh
Q 003961 254 EQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDAN--------DVVENLKRVVATLEKE 325 (783)
Q Consensus 254 e~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~--------~~~~sLk~~~~~L~kE 325 (783)
|.-.=...+++|..+..+-.+.-++|..|..|| .--.+++||+.++.....+..+ ..+..|+...+.+..|
T Consensus 51 e~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~~~E 129 (775)
T PF10174_consen 51 EAAELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERLQRE 129 (775)
T ss_pred HHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 333345678888888888889999999999999 7778999999998776555442 2344555555555666
Q ss_pred hhhhHhhHHHHHHHHHHhccc
Q 003961 326 NNSLKMEKTELVAALEKNRKS 346 (783)
Q Consensus 326 n~tlk~~~~eL~a~L~~~r~~ 346 (783)
+.-|.....++...+++.+.+
T Consensus 130 l~~lr~~lE~~q~~~e~~q~~ 150 (775)
T PF10174_consen 130 LERLRKTLEELQLRIETQQQT 150 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666655543
No 18
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.98 E-value=0.038 Score=67.73 Aligned_cols=67 Identities=19% Similarity=0.339 Sum_probs=48.0
Q ss_pred CCChhHHHHHHHHHHHhhhHHhHhHhhhhHHHHhhhhHHHhhhhhccccchhhhhhhhHHHHHhhhc
Q 003961 68 PHDPEIERYKAEIKRLQESEAEIKALSVNYAALLKEKEEQISRLNGEYGLLKQNLDATNAALNAFRN 134 (783)
Q Consensus 68 ~~~~eie~ykaei~~lq~seaeikals~nyaallkekedqi~rl~~engslk~nl~~t~~al~~~r~ 134 (783)
+.-++|+++...+..|+..++++..|-.-|.+.....+.++..+..+-..++.++.......+..+.
T Consensus 243 ~~r~~~~~l~~~~~~l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~ 309 (1201)
T PF12128_consen 243 KVRPEFDKLQQQYRQLQALEQQLCHLHAELNADEQQLEQEQPELKEELNELNEELEKLEDEIKELRD 309 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557788888889999999999999888888877777766666666655566665555554444443
No 19
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.94 E-value=0.12 Score=63.27 Aligned_cols=53 Identities=26% Similarity=0.392 Sum_probs=25.4
Q ss_pred ccchhhHHhhHHhhhchhH---HHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHH
Q 003961 201 MQGKEKELADLLEEKNRSL---AAERAAYESQTRQLRMELEQQRNKFADVQLKLQE 253 (783)
Q Consensus 201 ~~~~~~e~~d~le~~~~~~---aa~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqe 253 (783)
+||.=.+++.+=-+.++.+ ||--+.+...+.+....|+.-.+.+..++..+.+
T Consensus 142 ~QG~V~~i~~~kp~err~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~e 197 (1163)
T COG1196 142 SQGKVEEIINAKPEERRKLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEE 197 (1163)
T ss_pred ecccHHHHHcCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555444444444444433 2333445555555555555555555555544444
No 20
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.90 E-value=0.052 Score=61.33 Aligned_cols=145 Identities=26% Similarity=0.322 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 003961 375 EEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAK 454 (783)
Q Consensus 375 Eeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~ 454 (783)
..+...+..+..+|.++....+++.-|+..||.-. + =|+.+++..+..+..+.....
T Consensus 277 ~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~v-e-----------------sL~~ELe~~K~el~~lke~e~----- 333 (522)
T PF05701_consen 277 SELQSSLASAKKELEEAKKELEKAKEEASSLRASV-E-----------------SLRSELEKEKEELERLKEREK----- 333 (522)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-----------------HHHHHHHHHHHHHHHHHHHHH-----
Confidence 35666788889999999999999999999888652 1 233344444554444333222
Q ss_pred HHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHH
Q 003961 455 QEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKG----HLERELALAREESAKLSE 530 (783)
Q Consensus 455 qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~E----rLe~ELa~aree~a~Ls~ 530 (783)
.....+..++.++..++.+|..+...-.-..-...+|..+|.+...|.|.+. -...|++.++.++...-.
T Consensus 334 ------~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka 407 (522)
T PF05701_consen 334 ------EASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKA 407 (522)
T ss_pred ------HHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345567777888888888888776655555678999999999999998762 334455666666666666
Q ss_pred HHHHhhhHHHHhhhhHHH
Q 003961 531 YLKNADQRAEVSRSEKEE 548 (783)
Q Consensus 531 ~Lk~a~q~ie~~~kEKee 548 (783)
.++.+..++.+..+|.+.
T Consensus 408 ~i~t~E~rL~aa~ke~ea 425 (522)
T PF05701_consen 408 AIKTAEERLEAALKEAEA 425 (522)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666655443
No 21
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.87 E-value=0.072 Score=61.19 Aligned_cols=62 Identities=18% Similarity=0.284 Sum_probs=40.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhc
Q 003961 278 EITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 278 ~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (783)
++..+..+|+....+...|+.+ .++.....+.|...++.|..++......+.+|+..+.++.
T Consensus 172 ~v~~l~~eL~~~~ee~e~L~~~-----~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~ 233 (546)
T PF07888_consen 172 EVERLEAELEQEEEEMEQLKQQ-----QKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLT 233 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554444444432 1222345667788888888888888888888888888887
No 22
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.85 E-value=0.21 Score=63.14 Aligned_cols=79 Identities=16% Similarity=0.133 Sum_probs=58.7
Q ss_pred hhHHhhHHhhhchhHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCcccchhHHHHHH
Q 003961 205 EKELADLLEEKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMR 283 (783)
Q Consensus 205 ~~e~~d~le~~~~~~aa~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~ 283 (783)
...+.-++.+-+.++||.=..|..+.+.+=.|....+.|......+|.+.+..-.-+.+.+..|.=...+...+..+..
T Consensus 256 rdlFk~lI~~~~~~~aad~~r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~ 334 (1486)
T PRK04863 256 RDLFKHLITESTNYVAADYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAAS 334 (1486)
T ss_pred HHHHHHHhhhhhhhhHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999999998888888888888887766666666666555433333333333333
No 23
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.79 E-value=0.15 Score=65.11 Aligned_cols=278 Identities=25% Similarity=0.292 Sum_probs=167.7
Q ss_pred cchhhHHhhHHhhh------chhHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCcccc
Q 003961 202 QGKEKELADLLEEK------NRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKT 275 (783)
Q Consensus 202 ~~~~~e~~d~le~~------~~~~aa~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kt 275 (783)
.|.+++++|++.+. ...+-.+.-++.-.|..++..|..++......+.+.+-|-..+.-.-+.|..|+=+-.+.
T Consensus 993 k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~ 1072 (1822)
T KOG4674|consen 993 KGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKC 1072 (1822)
T ss_pred cchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566655442 334455566777888889999999988888888888888888888888877665444444
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHhcccccC-----C-cchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCC
Q 003961 276 SIEITEMRKELNGKLSELRRLQMELNRREDG-----D-ANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNE 349 (783)
Q Consensus 276 s~~~~~~~~el~ek~sei~rlq~~l~~~e~e-----~-~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~ 349 (783)
-.++.++ .+.+..++..+.+.+.. + -.+-+..+...++-|+++|..|-.++.++-+++.-+.
T Consensus 1073 ~~e~~~L-------k~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n----- 1140 (1822)
T KOG4674|consen 1073 NDELLKL-------KKSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSN----- 1140 (1822)
T ss_pred HHHHHHH-------HhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc-----
Confidence 4444443 33444444444442211 1 1134556666777777777777777766655554422
Q ss_pred cccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHH
Q 003961 350 KIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEE 429 (783)
Q Consensus 350 k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeE 429 (783)
.+.. . +|.+++..-+-.|+++......+++=+..|..||+|.---++ +.|++
T Consensus 1141 ------------~S~~-~----~g~sdL~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~-----------k~i~d 1192 (1822)
T KOG4674|consen 1141 ------------LSAM-L----LGLSDLQNIVSFLRKEKEIAETKLDTLKRENARLKQQVASLN-----------RTIDD 1192 (1822)
T ss_pred ------------cccc-c----cchHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHH-----------HHHHH
Confidence 1111 1 357788888888999999999999999999999999833322 45666
Q ss_pred HHHhHHHHHHHH---HHHHHHHHHHHHHHHHHhhhc-hHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHH
Q 003961 430 LRENNEYQRAQI---LHLENVLKQTLAKQEEFKMMN-HSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYF 505 (783)
Q Consensus 430 LreenE~~R~~I---s~lEraLK~~~a~qeelk~~n-~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfq 505 (783)
|+-.+...|... +.--...+--+..-..+--+. ++- -+++.-+.+..++.+.-..|...+.++.|||..|.+..
T Consensus 1193 L~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~--~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~ 1270 (1822)
T KOG4674|consen 1193 LQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNK--VLREENEANLEKIQELRDKIEKLNFELAPLQNELKELK 1270 (1822)
T ss_pred HHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Confidence 765544444322 000000010000000000000 111 23555566666666666788888999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHH
Q 003961 506 AEIEAKGHLERELALAREE 524 (783)
Q Consensus 506 AE~EA~ErLe~ELa~aree 524 (783)
+++... ..++--++++
T Consensus 1271 ~e~~~~---~ael~~l~~e 1286 (1822)
T KOG4674|consen 1271 AELQEK---VAELKKLEEE 1286 (1822)
T ss_pred HHHHHH---HHHHHHHHHH
Confidence 988765 4444444444
No 24
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.79 E-value=0.076 Score=64.30 Aligned_cols=61 Identities=20% Similarity=0.066 Sum_probs=41.3
Q ss_pred HHHHhhHHHHHhhhhhHHHhH-------HHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 003961 464 SEIQKSKEIIDGLNNKLANCM-------RTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREE 524 (783)
Q Consensus 464 ~E~~~ske~iedL~~~L~~~m-------ealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree 524 (783)
-++..+.+.|.++.+.+++|- ...+.--.++.|++.+++.|.-+-++..++-.-+.+..++
T Consensus 415 ~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~e 482 (1195)
T KOG4643|consen 415 KKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAE 482 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 466677788888888888762 2233334588999999999988877776555444444444
No 25
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.72 E-value=0.35 Score=61.90 Aligned_cols=144 Identities=27% Similarity=0.286 Sum_probs=82.3
Q ss_pred HHHHhhhHHhHhHhhhhHHHHhhhhHHHhhhhhcc-------ccchhhhhhhhHHHHHhhhcCCCccCCCCcccCCCCCC
Q 003961 80 IKRLQESEAEIKALSVNYAALLKEKEEQISRLNGE-------YGLLKQNLDATNAALNAFRNGNSKASSNGINIPKGSGD 152 (783)
Q Consensus 80 i~~lq~seaeikals~nyaallkekedqi~rl~~e-------ngslk~nl~~t~~al~~~r~~~~~~s~n~~~~~kg~~d 152 (783)
|+..-...++--..+|||=-.+-+-+.+|.+|.+. +-+++-++.-++..|...-.+.+..+- -.+.|-+.
T Consensus 33 ~~~~~~lk~e~~k~~v~~eq~~~~~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~---~~~~~~~~ 109 (1822)
T KOG4674|consen 33 SKDFESLKDEDGKTEVNHEQQLSELEKKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSERSNLSW---EIDALKLE 109 (1822)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH---HHHHhhhh
Confidence 34455567888899999999888888888887764 444555555555544432222111110 11222223
Q ss_pred CCCcccchhhhhhccCCcccccccCcccCCCCCCCccccchhhhhhccccchhhHHhhHHhhhchhHHHHHHHhHHHHHH
Q 003961 153 LSPSRQHKLTAQVKNRHAGHQLQNGFSKQDGVSNGSHALQTEVVQSSKMQGKEKELADLLEEKNRSLAAERAAYESQTRQ 232 (783)
Q Consensus 153 ~sp~r~~~~~~q~k~~~~~~~~~ng~~k~~g~~~~~~~~~~~~~~~~~~~~~~~e~~d~le~~~~~~aa~qa~~~~~i~~ 232 (783)
.+|-+.-+.-+|.--| -|-.+++-... .=....++++-
T Consensus 110 ~~~l~~~~se~~~qkr--------------------------------------~l~~~le~~~~----ele~l~~~n~~ 147 (1822)
T KOG4674|consen 110 NSQLRRAKSELQEQKR--------------------------------------QLMELLERQKA----ELEALESENKD 147 (1822)
T ss_pred hHHHHHHHHHHHHHHH--------------------------------------HHHHHHHHHHH----HHHHHHHHHHH
Confidence 3332222222221111 12222332222 22345678889
Q ss_pred HHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhc
Q 003961 233 LRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSL 268 (783)
Q Consensus 233 l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~l 268 (783)
|..+|..-+.++-+++.++|+=+.---+||-.+..|
T Consensus 148 l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl 183 (1822)
T KOG4674|consen 148 LNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERL 183 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988777666776655543
No 26
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.61 E-value=0.26 Score=57.41 Aligned_cols=295 Identities=22% Similarity=0.298 Sum_probs=166.7
Q ss_pred HHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCcccchhHHHHHHHHHhhhHHHHHHHHHHhcccccCCc
Q 003961 229 QTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDA 308 (783)
Q Consensus 229 ~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~ 308 (783)
=|+||.+|..++-.++.+-...+|+. +.-+-++++.|+-.|+.....|.+|... +++|+. |+..-......+
T Consensus 5 ~l~qlq~Erd~ya~~lk~e~a~~qqr---~~qmseev~~L~eEk~~~~~~V~eLE~s----L~eLk~-q~~~~~~~~~pa 76 (617)
T PF15070_consen 5 SLKQLQAERDQYAQQLKEESAQWQQR---MQQMSEEVRTLKEEKEHDISRVQELERS----LSELKN-QMAEPPPPEPPA 76 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-hhcccCCccccc
Confidence 46777777777777766666666543 4467788899988888877777665554 455543 444333333333
Q ss_pred c--hHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHH
Q 003961 309 N--DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEK 386 (783)
Q Consensus 309 ~--~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~ 386 (783)
+ ..-..|+..++.|++|...|..++.....+-..+. . -+.+.+..+..|+.
T Consensus 77 ~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls----------------------~-----L~~EqEerL~ELE~ 129 (617)
T PF15070_consen 77 GPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLS----------------------R-----LNQEQEERLAELEE 129 (617)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------H-----HHHHHHHHHHHHHH
Confidence 3 34458999999999999999877776654444432 1 12244445555555
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHH
Q 003961 387 DLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEI 466 (783)
Q Consensus 387 eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~ 466 (783)
.|........ + +..||+. ..++|.. |--.-..|..++.++..|+....+-.-...++...-.+|-
T Consensus 130 ~le~~~e~~~----D----~~kLLe~--lqsdk~t-----~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq 194 (617)
T PF15070_consen 130 ELERLQEQQE----D----RQKLLEQ--LQSDKAT-----ASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQ 194 (617)
T ss_pred HHHHHHHHHH----H----HHHHHhh--hcccchH-----HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHH
Confidence 5555432210 1 2223332 1233332 2222235778889999998877765544455555444443
Q ss_pred Hh---hHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHH-------HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 003961 467 QK---SKEIIDGLNNKLANCMRTIEAKNVELLNLQTA-------LGQYFAEIEAKGHLERELALAREESAKLSEYLKNAD 536 (783)
Q Consensus 467 ~~---ske~iedL~~~L~~~mealeAKnvEl~NLQtA-------LgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~ 536 (783)
.. +.....+|..+|-+.-+.|+.|+.|+.+||.- |.||.|.- ..+-.+-..+...+---++.
T Consensus 195 ~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~---q~l~~e~e~L~~q~l~Qtql----- 266 (617)
T PF15070_consen 195 HVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAY---QQLASEKEELHKQLLQQTQL----- 266 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-----
Confidence 32 44555566667777777999999999999885 34443322 12222222222221111111
Q ss_pred hHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHH
Q 003961 537 QRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQ 583 (783)
Q Consensus 537 q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeq 583 (783)
++.+.++-.-....+......+.+.+..+..+..+|..|+.-|..
T Consensus 267 --~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~qls~ 311 (617)
T PF15070_consen 267 --MDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQNQQLQAQLSL 311 (617)
T ss_pred --HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 122222111111112233455666677777788888888887743
No 27
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.59 E-value=0.16 Score=55.96 Aligned_cols=33 Identities=15% Similarity=0.279 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 003961 381 LQKLEKDLKETCSERDKALQELTRLKQHLIEKA 413 (783)
Q Consensus 381 lq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E 413 (783)
++.+++++.+...+......++.+|+.-+.+..
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~ 247 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAEIEELTDELLNLV 247 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566666666666666666666666665554
No 28
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.54 E-value=0.00058 Score=78.69 Aligned_cols=123 Identities=25% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhcccccCCcc-----hHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccC
Q 003961 279 ITEMRKELNGKLSELRRLQMELNRREDGDAN-----DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFP 353 (783)
Q Consensus 279 ~~~~~~el~ek~sei~rlq~~l~~~e~e~~~-----~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~ 353 (783)
+.+++.+|.+=-.++.+|+.++.-|..-..+ ++-+.|.+-|..|+.++.+|..+++.+.+.+..+.... ..+..
T Consensus 300 ~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~-~~Le~ 378 (722)
T PF05557_consen 300 LEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSELRELEEEI-QELEQ 378 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHH
Confidence 5677778887777888999999988875544 46678888899999999999999999999888877442 22222
Q ss_pred CCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 003961 354 DASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQ 414 (783)
Q Consensus 354 da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~ 414 (783)
....+ . +..++++..+..+......+..-+.=+.+|.+-||+.|=.-+.
T Consensus 379 e~~~l----------~--~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~ 427 (722)
T PF05557_consen 379 EKEQL----------L--KEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDK 427 (722)
T ss_dssp -------------------------------------------------------------
T ss_pred HHHHH----------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 21111 1 2333444444444444444444455567888888887655443
No 29
>PRK01156 chromosome segregation protein; Provisional
Probab=97.45 E-value=0.44 Score=56.26 Aligned_cols=92 Identities=13% Similarity=0.149 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHH--hcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHH
Q 003961 310 DVVENLKRVVATLEKENNSLKMEKTELVAALEK--NRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKD 387 (783)
Q Consensus 310 ~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~--~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~e 387 (783)
.-++.|...+..|+.+...++..+.+|..++.. .....|...+|...+.-... +...+ -..++++..+..|.++
T Consensus 416 ~~~~~l~~~i~~l~~~i~~l~~~~~el~~~~~~l~~~~~Cp~c~~~~~~e~~~e~--i~~~~--~~i~~l~~~i~~l~~~ 491 (895)
T PRK01156 416 VKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGEEKSNHI--INHYN--EKKSRLEEKIREIEIE 491 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcCChhhHHHH--HHHHH--HHHHHHHHHHHHHHHH
Confidence 345666666777777666666666666654442 23455666665554443332 22111 1344556666666666
Q ss_pred HHHhHHHHHHHHHHHHHH
Q 003961 388 LKETCSERDKALQELTRL 405 (783)
Q Consensus 388 L~e~~~E~dKa~kEL~RL 405 (783)
++....+..+....+.+|
T Consensus 492 ~~~l~~~~~~~~~~~~~l 509 (895)
T PRK01156 492 VKDIDEKIVDLKKRKEYL 509 (895)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666655555554
No 30
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.45 E-value=0.068 Score=58.91 Aligned_cols=161 Identities=14% Similarity=0.153 Sum_probs=92.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHH
Q 003961 310 DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLK 389 (783)
Q Consensus 310 ~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~ 389 (783)
..+..++..+..+.++...++.++..|..+|..+++ ..++++..+..++.++.
T Consensus 213 ~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~---------------------------~i~~~~~~L~~l~~~~~ 265 (562)
T PHA02562 213 ENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVM---------------------------DIEDPSAALNKLNTAAA 265 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------------------ccccHHHHHHHHHHHHH
Confidence 457788888888888888888888888888887772 11233444666666666
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhh
Q 003961 390 ETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKS 469 (783)
Q Consensus 390 e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~s 469 (783)
.+....++...++.-++.+- .-..= ...++.....+..|......++.++..++..+...-... .+....
T Consensus 266 ~~~~~l~~~~~~~~~~~~~~-~Cp~C-~~~~~~~~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~--------~~~~~~ 335 (562)
T PHA02562 266 KIKSKIEQFQKVIKMYEKGG-VCPTC-TQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIM--------DEFNEQ 335 (562)
T ss_pred HHHHHHHHHHHHHHHhcCCC-CCCCC-CCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH
Confidence 66666666666666554100 00000 011111123344444444444444554444443221111 134445
Q ss_pred HHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHH
Q 003961 470 KEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAE 507 (783)
Q Consensus 470 ke~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE 507 (783)
...+.++++.+..+..+|...-.++..|+.-++.....
T Consensus 336 ~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~ 373 (562)
T PHA02562 336 SKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAE 373 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66777777777777777777666666666666665555
No 31
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.44 E-value=0.099 Score=53.28 Aligned_cols=64 Identities=28% Similarity=0.370 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhhc
Q 003961 521 AREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRM 591 (783)
Q Consensus 521 aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~m 591 (783)
..+.+..|.+.|+.|..+++.+-+. ....+..+..+...+.+.+.....+.+-|+++|.-|+.|
T Consensus 174 ~e~~i~~L~~~lkeaE~Rae~aE~~-------v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el~~~ 237 (237)
T PF00261_consen 174 YEEKIRDLEEKLKEAENRAEFAERR-------VKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNELNEM 237 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 4456778888899998888775433 223455555555566666677777788888888877765
No 32
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.40 E-value=0.61 Score=56.60 Aligned_cols=143 Identities=22% Similarity=0.258 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCcccchhHHHHHHHHHhhhHHHHHHHHHH------
Q 003961 226 YESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQME------ 299 (783)
Q Consensus 226 ~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~------ 299 (783)
+.+|.++|..+|+--|-|-++=..||-|=.|.- .--++|.+. |.|+---.-.|.+||-.-.-|.+.+|.-
T Consensus 229 Lr~QvrdLtEkLetlR~kR~EDk~Kl~Elekmk-iqleqlqEf---kSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~ 304 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLETLRLKRAEDKAKLKELEKMK-IQLEQLQEF---KSKIMEQQADLQRELKRARKEAKEAQEAKERYKE 304 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH-HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556678888777777766666666655443321 111222222 2344444555666666666666655532
Q ss_pred ----------hcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCC
Q 003961 300 ----------LNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSE 369 (783)
Q Consensus 300 ----------l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~ 369 (783)
+-.-+.|-+.+-.++|+..+++++. ...+|+-+|+-+|.-- .+++.|..-..
T Consensus 305 emad~ad~iEmaTldKEmAEERaesLQ~eve~lkE-------r~deletdlEILKaEm-----------eekG~~~~~~s 366 (1243)
T KOG0971|consen 305 EMADTADAIEMATLDKEMAEERAESLQQEVEALKE-------RVDELETDLEILKAEM-----------EEKGSDGQAAS 366 (1243)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH-----------HhcCCCCcccc
Confidence 2222233333334455555555444 4455555555555221 12233322211
Q ss_pred CCCChhHHHHHHHHHHHHHHHh
Q 003961 370 SFPGKEEMEQSLQKLEKDLKET 391 (783)
Q Consensus 370 sf~~kEeme~slq~L~~eL~e~ 391 (783)
| -+--.||+.-+.|+..|.-+
T Consensus 367 s-~qfkqlEqqN~rLKdalVrL 387 (1243)
T KOG0971|consen 367 S-YQFKQLEQQNARLKDALVRL 387 (1243)
T ss_pred h-HHHHHHHHHHHHHHHHHHHH
Confidence 1 23346666667766666655
No 33
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.39 E-value=0.7 Score=57.24 Aligned_cols=398 Identities=17% Similarity=0.158 Sum_probs=203.3
Q ss_pred cccchhhHHhhHHhhhchhHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCcccchhHH
Q 003961 200 KMQGKEKELADLLEEKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEI 279 (783)
Q Consensus 200 ~~~~~~~e~~d~le~~~~~~aa~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~ 279 (783)
.|..+-++.-++|-..+-+ |.--+++-..+..||.+|-.-++++..++-+|-+=..-+-+-+-+|.+|.-+ ..-+
T Consensus 1205 ~me~kl~~ir~il~~~svs-~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~----~~~l 1279 (1758)
T KOG0994|consen 1205 DMEEKLEEIRAILSAPSVS-AEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQRE----FNGL 1279 (1758)
T ss_pred HHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHH----HHHH
Confidence 3555566677777544433 3344566677777788887777888777777777666666667777777533 3345
Q ss_pred HHHHHHHhhhHHHHHHH---------------HHHhcccccCCcc---hHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHH
Q 003961 280 TEMRKELNGKLSELRRL---------------QMELNRREDGDAN---DVVENLKRVVATLEKENNSLKMEKTELVAALE 341 (783)
Q Consensus 280 ~~~~~el~ek~sei~rl---------------q~~l~~~e~e~~~---~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~ 341 (783)
.++-+||.++...|+.- -.+..++-+.... -.+++- |+-+-+.|....++. +-+=..+|.
T Consensus 1280 ~~~~keL~e~~~~ik~sdi~GA~~~~r~a~~~s~ea~~r~~~s~~~l~s~~~~s-R~e~l~~k~k~~f~~-~~~n~~~L~ 1357 (1758)
T KOG0994|consen 1280 LTTYKELREQLEKIKESDILGAFNSTRHAYEQSAEAERRVDASSRELASLVDQS-RVEELLVKQKGDFGG-LAENSRLLV 1357 (1758)
T ss_pred HHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhh-HHHHHHHHhhhcccc-cccccHHHH
Confidence 67778888888877642 1234444443332 133333 666667777776666 222222233
Q ss_pred HhcccCCCcccCCCCCCCCcCCC----C---------CCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003961 342 KNRKSSNEKIFPDASEYPSRLDG----M---------VSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQH 408 (783)
Q Consensus 342 ~~r~~~~~k~~~da~e~~~r~~d----~---------~~~~sf~~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqH 408 (783)
.+|.-+++-.-+++-+..=..++ + +-.--|+.=.-.-........--.++..+.+.+..|..++.+.
T Consensus 1358 el~~~l~sL~L~~lne~vCG~p~apC~s~CGG~gC~~~~~cGg~sC~Ga~t~A~~A~~~A~~~~~~l~~~~ae~eq~~~~ 1437 (1758)
T KOG0994|consen 1358 ELRAELSSLPLTPLNEQVCGAPGAPCDSLCGGAGCRQDGTCGGLSCRGAVTRAGGALLMAGDADTQLRSKLAEAEQTLSM 1437 (1758)
T ss_pred HHHHHhcCCCCchhhHHhcCCCCCCCCCCCCCCCCCCCCCccCccccchhcccchHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 33322221111111111111110 0 0000000000000000000011123334445555555554444
Q ss_pred HHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--------HHHhhhch----HHHHhhHHHHHhh
Q 003961 409 LIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQ--------EEFKMMNH----SEIQKSKEIIDGL 476 (783)
Q Consensus 409 LLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~q--------eelk~~n~----~E~~~ske~iedL 476 (783)
+-+-....++......+..+-......++..-+..|+. |-+++-++ +.++++.. .+|-..-++|..|
T Consensus 1438 v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~-Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L 1516 (1758)
T KOG0994|consen 1438 VREAKLSASEAQQSAQRALEQANASRSQMEESNRELRN-LIQQVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQL 1516 (1758)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHH
Confidence 44333333322222222222222222222222222222 11111111 22222221 1333334556665
Q ss_pred hhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH---HHHHHHhhhHHHHhhhhHHHHHHhh
Q 003961 477 NNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKL---SEYLKNADQRAEVSRSEKEEILVKL 553 (783)
Q Consensus 477 ~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~L---s~~Lk~a~q~ie~~~kEKeei~~KL 553 (783)
+..|...=..|.|.-..|.+--.++.-++.|.++..++++....+ +...++|.+.++.+..+. ...+
T Consensus 1517 -------~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a---~~ai 1586 (1758)
T KOG0994|consen 1517 -------TGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEA---QDAI 1586 (1758)
T ss_pred -------HHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 334444445678888899999999999999999999999885543 234444444444433332 2345
Q ss_pred hHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHh-cCCchHHHHHH
Q 003961 554 SHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRMSVDSDFLVDRRIVIKLLVTYFQ-RNHSKEVLDLM 624 (783)
Q Consensus 554 s~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ms~dsD~~VDRRIVtkLLLTYf~-R~~sKEVL~LM 624 (783)
.++-..+.....++.|+.++....-+.+..+-++|.. ++ +.|..|=+.|.+ ....|.+....
T Consensus 1587 ~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~e--------L~-~~~e~lk~~~~qns~~A~~a~~~a 1649 (1758)
T KOG0994|consen 1587 QGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGE--------LE-TRMEELKHKAAQNSAEAKQAEKTA 1649 (1758)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH-HHHHHHHHHHHhccHHHHHHHHHH
Confidence 5677777788888888888888888888888888876 33 346677777776 44444444433
No 34
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.37 E-value=0.72 Score=56.98 Aligned_cols=50 Identities=26% Similarity=0.412 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHhhhHHhHhHhhhhHHHHhhhhHHHhhhhhccccchhhhhhhh
Q 003961 72 EIERYKAEIKRLQESEAEIKALSVNYAALLKEKEEQISRLNGEYGLLKQNLDAT 125 (783)
Q Consensus 72 eie~ykaei~~lq~seaeikals~nyaallkekedqi~rl~~engslk~nl~~t 125 (783)
.|+++.+.+.++-.-..++..|..-|.+|..- ...+...+-.+++.|+..
T Consensus 343 ~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~----~~di~~ky~~~~~~l~~~ 392 (1201)
T PF12128_consen 343 DIEQLIARVDQLPEWRNELENLQEQLDLLTSK----HQDIESKYNKLKQKLEEA 392 (1201)
T ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 37777777777777777777776666666543 333344444466666543
No 35
>PRK11637 AmiB activator; Provisional
Probab=97.36 E-value=0.13 Score=56.11 Aligned_cols=36 Identities=17% Similarity=0.360 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003961 374 KEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHL 409 (783)
Q Consensus 374 kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHL 409 (783)
.+++++.++.+++++.++..+.+.+.++|..|-..|
T Consensus 49 l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi 84 (428)
T PRK11637 49 LKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAI 84 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555556655556666666665555553
No 36
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.36 E-value=0.43 Score=59.11 Aligned_cols=24 Identities=38% Similarity=0.576 Sum_probs=10.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhc
Q 003961 278 EITEMRKELNGKLSELRRLQMELN 301 (783)
Q Consensus 278 ~~~~~~~el~ek~sei~rlq~~l~ 301 (783)
+..++.+||++-+.+++-...+|.
T Consensus 462 ~~~~~~keL~e~i~~lk~~~~el~ 485 (1317)
T KOG0612|consen 462 ELEEMDKELEETIEKLKSEESELQ 485 (1317)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555544444433333333
No 37
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.34 E-value=0.64 Score=55.68 Aligned_cols=115 Identities=22% Similarity=0.345 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhccc-------CcccchhHHHHHHHHHhhhHHHHHHHHHHhcc
Q 003961 230 TRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKM-------DKDKTSIEITEMRKELNGKLSELRRLQMELNR 302 (783)
Q Consensus 230 i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~-------~~~kts~~~~~~~~el~ek~sei~rlq~~l~~ 302 (783)
...+..+|+.-|+++..+|.+++-=+.-...|++++..|.- +.+..+ ..+.+-.-+-+.-+.+-+|+..|..
T Consensus 123 ~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~-~~~~~~~~~~~~e~~~~~le~lle~ 201 (775)
T PF10174_consen 123 RERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEE-EDNEALRRIREAEARIMRLESLLER 201 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchh-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445577778888888888888777777777777766643 332222 2233333455666666677766666
Q ss_pred cccCC--------------cch-HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcc
Q 003961 303 REDGD--------------AND-VVENLKRVVATLEKENNSLKMEKTELVAALEKNRK 345 (783)
Q Consensus 303 ~e~e~--------------~~~-~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~ 345 (783)
++.+. .++ .-+.|+++|+.-.-.+.+|+-....|+..|..++.
T Consensus 202 ~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~ 259 (775)
T PF10174_consen 202 KEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRS 259 (775)
T ss_pred HHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66555 223 34479999999999999999999999999999983
No 38
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.30 E-value=1.1 Score=57.18 Aligned_cols=36 Identities=31% Similarity=0.388 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHH
Q 003961 499 TALGQYFAEIEAK-GHLERELALAREESAKLSEYLKN 534 (783)
Q Consensus 499 tALgqfqAE~EA~-ErLe~ELa~aree~a~Ls~~Lk~ 534 (783)
.+|++|+++.||. +.+..+++.+.+.-..+-+.+..
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~q 590 (1486)
T PRK04863 554 DELEQLQEELEARLESLSESVSEARERRMALRQQLEQ 590 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777776 36666666555554444433333
No 39
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.27 E-value=0.23 Score=61.21 Aligned_cols=219 Identities=23% Similarity=0.311 Sum_probs=110.5
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHH
Q 003961 310 DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLK 389 (783)
Q Consensus 310 ~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~ 389 (783)
++|+-+.+.+......-..+..+..+++..+...| ...+ +|+..++.+..+++
T Consensus 778 ~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr-------------------~~~~--------~l~~~l~~~~~~~k 830 (1293)
T KOG0996|consen 778 ESVEKLERALSKMSDKARQHQEQLHELEERVRKLR-------------------ERIP--------ELENRLEKLTASVK 830 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HhhH--------HHHhHHHHHHHHHH
Confidence 36777777777777777777777777888888877 1112 56666666666666
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHh---------
Q 003961 390 ETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHL-ENVLKQTLAKQEEFK--------- 459 (783)
Q Consensus 390 e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~l-EraLK~~~a~qeelk--------- 459 (783)
..+.+..-+.+-+..+-...+-. .-|.+-.+++++..+.++.++..+ |.+.|++ ....+.
T Consensus 831 ~~~~~~~~l~~~i~~~E~~~~k~--------~~d~~~l~~~~~~ie~l~kE~e~~qe~~~Kk~--~i~~lq~~i~~i~~e 900 (1293)
T KOG0996|consen 831 RLAELIEYLESQIAELEAAVLKK--------VVDKKRLKELEEQIEELKKEVEELQEKAAKKA--RIKELQNKIDEIGGE 900 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc--------cCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHH--HHHHHHHHHHHhhch
Confidence 66654444444444443332111 112223344444455555555555 5555522 111211
Q ss_pred --hhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHH
Q 003961 460 --MMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKG----HLERELALAREESAKLSEYLK 533 (783)
Q Consensus 460 --~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~E----rLe~ELa~aree~a~Ls~~Lk 533 (783)
..+...+.+++++|+.|.++++.|-.+|+-.+.-+.-.|.-|...--+++..+ -|..++--+.+..+.+...++
T Consensus 901 ~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~ 980 (1293)
T KOG0996|consen 901 KVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYK 980 (1293)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 12235666666777777666666665555544444444444444444443331 122222222222333333333
Q ss_pred HhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhh
Q 003961 534 NADQRAEVSRSEKEEILVKLSHSEKMLAEGKG 565 (783)
Q Consensus 534 ~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~ 565 (783)
++...+...+.+-..+-..+...+...+++|.
T Consensus 981 e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~ 1012 (1293)
T KOG0996|consen 981 EAEESLKEIKKELRDLKSELENIKKSENELKA 1012 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333445566666677665
No 40
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.26 E-value=0.89 Score=55.70 Aligned_cols=50 Identities=26% Similarity=0.317 Sum_probs=32.0
Q ss_pred CCCCChhHHHHHHHHHHHhhhHHhHhHhhhhHHHH---hhhhHHHhhhhhccccch
Q 003961 66 ESPHDPEIERYKAEIKRLQESEAEIKALSVNYAAL---LKEKEEQISRLNGEYGLL 118 (783)
Q Consensus 66 ~~~~~~eie~ykaei~~lq~seaeikals~nyaal---lkekedqi~rl~~engsl 118 (783)
...-.-+|--+++.|++|+.- =|=|+ =|.--| |..+|-.|++|++|+|-+
T Consensus 172 ~~hL~velAdle~kir~LrqE-lEEK~--enll~lr~eLddleae~~klrqe~~e~ 224 (1195)
T KOG4643|consen 172 NLHLEVELADLEKKIRTLRQE-LEEKF--ENLLRLRNELDDLEAEISKLRQEIEEF 224 (1195)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455788889999998742 22233 333332 455677899999998854
No 41
>PF10375 GRAB: GRIP-related Arf-binding domain ; InterPro: IPR019459 The GRIP-related Arf-binding (GRAB) domain is located towards the C terminus of Rud3 type proteins. It is related to the GRIP domain, but the conserved tyrosine residue found at position 4 in all GRIP domains is replaced by a leucine residue. The small GTPase Arf is localised to the cis-Golgi where it recruits proteins via their GRAB domain, as part of the transport of cargo from the endoplasmic reticulum to the plasma membrane [].
Probab=97.24 E-value=0.00016 Score=49.53 Aligned_cols=18 Identities=33% Similarity=0.670 Sum_probs=16.6
Q ss_pred cchhhhHHHHHHHHHHHH
Q 003961 595 SDFLVDRRIVIKLLVTYF 612 (783)
Q Consensus 595 sD~~VDRRIVtkLLLTYf 612 (783)
++++||||||||+||+||
T Consensus 2 ~e~~VDk~lisN~~l~Fl 19 (19)
T PF10375_consen 2 SEDNVDKRLISNLLLSFL 19 (19)
T ss_pred chhhHHHHHHHHHHHhcC
Confidence 678999999999999996
No 42
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.20 E-value=0.98 Score=56.15 Aligned_cols=36 Identities=22% Similarity=0.346 Sum_probs=21.0
Q ss_pred ChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003961 373 GKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQH 408 (783)
Q Consensus 373 ~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqH 408 (783)
+..+|+..+..|+.....+..+..+...++.+.|+.
T Consensus 582 ~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~ 617 (1317)
T KOG0612|consen 582 ENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQ 617 (1317)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666666566655566666666555544
No 43
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=97.16 E-value=0.17 Score=54.91 Aligned_cols=221 Identities=28% Similarity=0.393 Sum_probs=110.8
Q ss_pred hchhHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHH--HHHhhchHHHHHHhhcccCcccchhHHHH----HHHHHhh
Q 003961 215 KNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQ--EEQRLNESFQDELKSLKMDKDKTSIEITE----MRKELNG 288 (783)
Q Consensus 215 ~~~~~aa~qa~~~~~i~~l~~el~~~~~k~~~~~~~lq--ee~k~n~~fqe~l~~lk~~~~kts~~~~~----~~~el~e 288 (783)
.++.+=..-++.....+-|..++..-|...-.|+.+-+ ||.--|..|+ -|..|+-+|+...+.+.+ |-|-|.-
T Consensus 35 en~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlK-kl~~l~keKe~L~~~~e~EEE~ltn~L~r 113 (310)
T PF09755_consen 35 ENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLK-KLQQLKKEKETLALKYEQEEEFLTNDLSR 113 (310)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555555555555555442 3333344443 477777777766655544 6777777
Q ss_pred hHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhh-------hhHhhHHHHHHHHHHhccc---------------
Q 003961 289 KLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENN-------SLKMEKTELVAALEKNRKS--------------- 346 (783)
Q Consensus 289 k~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~-------tlk~~~~eL~a~L~~~r~~--------------- 346 (783)
|+..|+.-..+|-+.=..+..-.|..|++.|..|+++.. .|..++.+|+-.|+.=.-.
T Consensus 114 kl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~e 193 (310)
T PF09755_consen 114 KLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAE 193 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777766666654444444566666666666655332 2233333333333321111
Q ss_pred ---CCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 003961 347 ---SNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDED 423 (783)
Q Consensus 347 ---~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded 423 (783)
+-.++.+..+....- .|+... -..+. +.+. ...-+..+..|+.|||+.|...+-+..++|--=
T Consensus 194 Kr~Lq~~l~~~~s~~~s~-~d~~~~--~~~~D----t~e~-------~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~ 259 (310)
T PF09755_consen 194 KRRLQEKLEQPVSAPPSP-RDTVNV--SEEND----TAER-------LSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQY 259 (310)
T ss_pred HHHHHHHHccccCCCCCc-chHHhh--cccCC----chhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111110000000 000000 00111 1222 233356677888999999988887777666543
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003961 424 SKIIEELRENNEYQRAQILHLENVLKQTLAKQEE 457 (783)
Q Consensus 424 ~k~IeELreenE~~R~~Is~lEraLK~~~a~qee 457 (783)
.....++|++| ..|.+.|..+++..+.
T Consensus 260 ~~eek~ireEN-------~rLqr~L~~E~errea 286 (310)
T PF09755_consen 260 LQEEKEIREEN-------RRLQRKLQREVERREA 286 (310)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 33334555566 5566677777766654
No 44
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.12 E-value=0.43 Score=49.39 Aligned_cols=39 Identities=26% Similarity=0.434 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 003961 374 KEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEK 412 (783)
Q Consensus 374 kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~ 412 (783)
+.-.+..+..|+..|.++..++.++..++..|+.-+-+.
T Consensus 49 ~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~ 87 (312)
T PF00038_consen 49 KEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDL 87 (312)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHH
Confidence 445666677777777777777777777777766654444
No 45
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.07 E-value=0.81 Score=52.99 Aligned_cols=107 Identities=14% Similarity=0.173 Sum_probs=59.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCcccchhHHHHHHHHHhhhHHHHHHHHHH
Q 003961 220 AAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQME 299 (783)
Q Consensus 220 aa~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~ 299 (783)
....-+-.-+|.+|.-.|..+-+|+..+.- .|.-++-+|+.|+---.+-+ ..|+.-.+..+...|++=.+
T Consensus 34 r~sR~rEK~El~~LNDRLA~YIekVR~LEa-------qN~~L~~di~~lr~~~~~~t---s~ik~~ye~El~~ar~~l~e 103 (546)
T KOG0977|consen 34 RDSREREKKELQELNDRLAVYIEKVRFLEA-------QNRKLEHDINLLRGVVGRET---SGIKAKYEAELATARKLLDE 103 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhccCCC---cchhHHhhhhHHHHHHHHHH
Confidence 334445566888999999999999876542 37778888888865443332 22333333333333333222
Q ss_pred hcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhc
Q 003961 300 LNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 300 l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (783)
-. .....++..|..|+.|+..|+..+.+.+..+..-|
T Consensus 104 ~~--------~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~r 140 (546)
T KOG0977|consen 104 TA--------RERAKLEIEITKLREELKELRKKLEKAEKERRGAR 140 (546)
T ss_pred HH--------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhH
Confidence 11 13344555555566666666555555444443333
No 46
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.95 E-value=1.4 Score=52.39 Aligned_cols=259 Identities=22% Similarity=0.260 Sum_probs=129.7
Q ss_pred CCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh-------h--------hhhh----hhhhHHHHHHH
Q 003961 371 FPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQE-------E--------SEKM----DEDSKIIEELR 431 (783)
Q Consensus 371 f~~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~E-------e--------~ekm----ded~k~IeELr 431 (783)
.|-+++..+-+..|++-...++.|||.+.+|..-||..|-..=.- + .||+ =-++.+|.-||
T Consensus 401 ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLR 480 (961)
T KOG4673|consen 401 SSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLR 480 (961)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999888765432110 0 1111 12344555555
Q ss_pred H---hHHHHHH----HHHHHHHH---HHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHH
Q 003961 432 E---NNEYQRA----QILHLENV---LKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTAL 501 (783)
Q Consensus 432 e---enE~~R~----~Is~lEra---LK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtAL 501 (783)
. ++|.+.. +|..|+.. ||.-.+..++.....-.-|.+++.+..+-+..+.+.-..+++....+.-+|.++
T Consensus 481 Ak~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~ 560 (961)
T KOG4673|consen 481 AKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATN 560 (961)
T ss_pred HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Confidence 4 2322222 22222221 222222223332222333444455555444444442222223333445567777
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHH-HH----HHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhH-----
Q 003961 502 GQYFAEIEAKGHLERELALAREE-SA----KLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLE----- 571 (783)
Q Consensus 502 gqfqAE~EA~ErLe~ELa~aree-~a----~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~----- 571 (783)
...|.+.--.-||.++-++.++. ++ .|-+.|..+.|.+ +.+|- .+-+-+.+.++.|++.-.+|.-|.
T Consensus 561 d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~a--arrEd-~~R~Ei~~LqrRlqaaE~R~eel~q~v~~ 637 (961)
T KOG4673|consen 561 DEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQA--ARRED-MFRGEIEDLQRRLQAAERRCEELIQQVPE 637 (961)
T ss_pred hhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 77666553344555555544444 22 2333444444432 22332 122445566666776666666544
Q ss_pred ------HhHHHHHHHHHHHHHHHhhccCCcchhhhHHHH-HHHHHHHH-hcCCchHHHHHHHHhcCCCHHHHHH
Q 003961 572 ------EDNAKLRLAVEQSMTRLNRMSVDSDFLVDRRIV-IKLLVTYF-QRNHSKEVLDLMVRMLGFSDEDKQR 637 (783)
Q Consensus 572 ------eDn~kLR~ALeqsl~RL~~ms~dsD~~VDRRIV-tkLLLTYf-~R~~sKEVL~LMArMLgFSDEEK~r 637 (783)
-.++-|-++|.++..--.+ ...+|--||- +..|+.-. .+.+ .+--+||+.-+|++...-+-
T Consensus 638 TTrPLlRQIE~lQ~tl~~~~tawer----eE~~l~~rL~dSQtllr~~v~~eq-gekqElL~~~~~l~s~~~q~ 706 (961)
T KOG4673|consen 638 TTRPLLRQIEALQETLSKAATAWER----EERSLNERLSDSQTLLRINVLEEQ-GEKQELLSLNFSLPSSPIQL 706 (961)
T ss_pred cccHHHHHHHHHHHHHhhhhhHHHH----HHHHHHHhhhhHHHHHHHHHHHHh-hhHHHHHHHhcCCCcchhHH
Confidence 4566677777666554444 2233444443 23333322 2321 12334555555665554443
No 47
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.93 E-value=1.8 Score=53.23 Aligned_cols=72 Identities=33% Similarity=0.416 Sum_probs=52.9
Q ss_pred ccCcccchhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcc
Q 003961 269 KMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRK 345 (783)
Q Consensus 269 k~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~ 345 (783)
++|+.|-+.|-.=.-+||+|-..++-+|...-+. ++..-.++...+...+.+-..++.++++|+..|+.++.
T Consensus 215 kldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~-----~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ 286 (1200)
T KOG0964|consen 215 KLDKERRSLEYTIYDRELNEINGELERLEEDRSS-----APEESEQYIDALDKVEDESEDLKCEIKELENKLTNLRE 286 (1200)
T ss_pred HHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhc-----cchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999766543 22223344445555566666777777788888887773
No 48
>PLN03188 kinesin-12 family protein; Provisional
Probab=96.82 E-value=2.1 Score=53.66 Aligned_cols=119 Identities=24% Similarity=0.231 Sum_probs=69.3
Q ss_pred hhhHHhhHHhhh--chhHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhh-------------chHHHHHHhhc
Q 003961 204 KEKELADLLEEK--NRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRL-------------NESFQDELKSL 268 (783)
Q Consensus 204 ~~~e~~d~le~~--~~~~aa~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~-------------n~~fqe~l~~l 268 (783)
-+|-||..+... .--+.+.||+--.|..-|-+|...||+=-+.|-. -.|-|+ -+++-||+-+|
T Consensus 868 ~~kvl~~a~~re~~le~~c~~qa~~i~ql~~lv~qyk~e~~~~~~~~~--~~~~ki~~l~~~~dg~l~~~~~~~~~~~~~ 945 (1320)
T PLN03188 868 VEKVLAGAIRREMALEEFCTKQASEITQLNRLVQQYKHERECNAIIGQ--TREDKIIRLESLMDGVLSKEDFLEEELASL 945 (1320)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhHHHhh--hhhhhHHHHhhhcccccchhhhhhhhhhhh
Confidence 345566665444 4557788888433333344455555554444332 223333 24555666665
Q ss_pred ccCcccchhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHh
Q 003961 269 KMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKE 325 (783)
Q Consensus 269 k~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kE 325 (783)
|+.+|.-.++-.-|=|+---.-||+|+|.||..-.+--+.+--+-|..+|..|+.+
T Consensus 946 -~~~~~~~~~~y~~~p~~~~~~~e~~~~~~e~~~~~~~~d~~ErEvll~eI~dlr~q 1001 (1320)
T PLN03188 946 -MHEHKLLKEKYENHPEVLRTKIELKRVQDELEHYRNFYDMGEREVLLEEIQDLRSQ 1001 (1320)
T ss_pred -hhhHHHHHHHhhcChhhhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Confidence 67777777777777777777779999999998633333323344444555555533
No 49
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.76 E-value=1.7 Score=53.68 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=30.9
Q ss_pred chHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhc
Q 003961 309 NDVVENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 309 ~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (783)
..++++-+..|..++++...++.++.+++..|..|.
T Consensus 220 ~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~ 255 (1074)
T KOG0250|consen 220 MESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLE 255 (1074)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 457788888888999999999999999999888888
No 50
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.74 E-value=1.6 Score=49.82 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=15.7
Q ss_pred HHHHHHHHHhhhhhhhHHHhHHHHH
Q 003961 231 RQLRMELEQQRNKFADVQLKLQEEQ 255 (783)
Q Consensus 231 ~~l~~el~~~~~k~~~~~~~lqee~ 255 (783)
-+.-.||+.-+....++.++|+.-+
T Consensus 58 ~~~l~ELe~akr~veel~~kLe~~~ 82 (522)
T PF05701_consen 58 AQALSELESAKRTVEELKLKLEKAQ 82 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567777777777777776433
No 51
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.73 E-value=0.91 Score=47.04 Aligned_cols=106 Identities=22% Similarity=0.344 Sum_probs=50.3
Q ss_pred HHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHH
Q 003961 472 IIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILV 551 (783)
Q Consensus 472 ~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~ 551 (783)
+++++.........++.+...|+..+..-+....++++. ++..++.|...|.+..+.... +...+-.
T Consensus 196 k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~----------l~~~~~~Le~~l~~le~~~~~---~~~~~~~ 262 (312)
T PF00038_consen 196 KLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELES----------LRAKNASLERQLRELEQRLDE---EREEYQA 262 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred ccccccccccccccccchhHhHHHHHHhhhhHhhhhhhc----------cccchhhhhhhHHHHHHHHHH---HHHHHHH
Confidence 344444444445555555566666666666555555533 444455555444444444332 2222222
Q ss_pred hhhHHHHHHHhhhhhhhhhH---HhHHHHHHHHHHHHHHHhh
Q 003961 552 KLSHSEKMLAEGKGRANKLE---EDNAKLRLAVEQSMTRLNR 590 (783)
Q Consensus 552 KLs~~E~~l~e~K~~~~KL~---eDn~kLR~ALeqsl~RL~~ 590 (783)
.+...+..+.+++..+.... ++.--++-+|+.=|..+++
T Consensus 263 ~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~ 304 (312)
T PF00038_consen 263 EIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRK 304 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33334444444444443333 3333344555555555554
No 52
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.59 E-value=2.6 Score=50.37 Aligned_cols=99 Identities=19% Similarity=0.240 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHH-
Q 003961 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLK- 389 (783)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~- 389 (783)
++..+..++...++++.++..-..+|++.+-...+++..- .- + ++ .++.|+
T Consensus 524 ~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a-~~----------------------D----lq-k~nrlkQ 575 (961)
T KOG4673|consen 524 TIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEA-RS----------------------D----LQ-KENRLKQ 575 (961)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhh-hh----------------------h----HH-HHhhhhh
Confidence 5555556666666666666666666666665555431110 00 1 11 133344
Q ss_pred -HhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003961 390 -ETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQT 451 (783)
Q Consensus 390 -e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~ 451 (783)
+++++-.-..+-+.-||+.|--.| .+-.. .-.|+|..|.+|.|-|-.+
T Consensus 576 dear~~~~~lvqqv~dLR~~L~~~E--q~aar------------rEd~~R~Ei~~LqrRlqaa 624 (961)
T KOG4673|consen 576 DEARERESMLVQQVEDLRQTLSKKE--QQAAR------------REDMFRGEIEDLQRRLQAA 624 (961)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH------------HHHHHHHHHHHHHHHHHHH
Confidence 666666677777888888765554 12111 2347777778777776654
No 53
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.59 E-value=1.1 Score=45.96 Aligned_cols=203 Identities=20% Similarity=0.250 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 003961 375 EEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAK 454 (783)
Q Consensus 375 Eeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~ 454 (783)
++.+..+..+...|++.....+++..|+..|.+.+--.++ +-++.++- +.+..+.++.........++.++.-=..
T Consensus 11 d~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~-~le~~eer---L~~~~~kL~~~e~~~de~er~~k~lE~r 86 (237)
T PF00261_consen 11 DEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEE-ELERAEER---LEEATEKLEEAEKRADESERARKVLENR 86 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHCC---CCHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4455567788888999999999999999999999777664 22233321 2233334555566666666666642111
Q ss_pred HH--HHhhh-chHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 003961 455 QE--EFKMM-NHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEY 531 (783)
Q Consensus 455 qe--elk~~-n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~ 531 (783)
.. +-++- -...+..++...++.-.++..+...+......|...-. -.+.++..+..+.+++..+...
T Consensus 87 ~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEe----------R~e~~E~ki~eLE~el~~~~~~ 156 (237)
T PF00261_consen 87 EQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEE----------RAEAAESKIKELEEELKSVGNN 156 (237)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHhhhchhHHHHHHHHHHHHHH
Confidence 00 00000 01122222233333333333332222221112222111 1233444444455555555544
Q ss_pred HHHhhhHH-------HHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhhc
Q 003961 532 LKNADQRA-------EVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRM 591 (783)
Q Consensus 532 Lk~a~q~i-------e~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~m 591 (783)
|+.....- +.....-..+..+|..++.....+...|.+|+..+..|...|...-......
T Consensus 157 lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~ 223 (237)
T PF00261_consen 157 LKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKV 223 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433332 1111111123456777888888888888888888888888887666555443
No 54
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.55 E-value=3.3 Score=51.22 Aligned_cols=40 Identities=33% Similarity=0.409 Sum_probs=24.3
Q ss_pred hhhhHHhHHHHHHHHHHHHHHH-hhccCCcchhhhHHHHHHHHHH
Q 003961 567 ANKLEEDNAKLRLAVEQSMTRL-NRMSVDSDFLVDRRIVIKLLVT 610 (783)
Q Consensus 567 ~~KL~eDn~kLR~ALeqsl~RL-~~ms~dsD~~VDRRIVtkLLLT 610 (783)
+++|.+- +...+++++|-.+ |..++.+. .|.+++..++=.
T Consensus 502 ~Vtl~~~--KWa~aIE~~L~n~lnaFiv~sh--~D~~~Lr~i~~~ 542 (1074)
T KOG0250|consen 502 YVTLKEP--KWALAIERCLGNLLNAFIVTSH--KDARILRAIMRR 542 (1074)
T ss_pred eeEecCc--HHHHHHHHHHHHhhhhheeCCH--hhHHHHHHHHHH
Confidence 4445555 7777887777665 66664443 666666665543
No 55
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.54 E-value=0.0028 Score=73.23 Aligned_cols=165 Identities=20% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHHHHHHHHhcccccCC-------cc-----hHHHHHHHHHHH---HHHhhhhhHhhHHHHHHHHHHhccc
Q 003961 282 MRKELNGKLSELRRLQMELNRREDGD-------AN-----DVVENLKRVVAT---LEKENNSLKMEKTELVAALEKNRKS 346 (783)
Q Consensus 282 ~~~el~ek~sei~rlq~~l~~~e~e~-------~~-----~~~~sLk~~~~~---L~kEn~tlk~~~~eL~a~L~~~r~~ 346 (783)
|.+++.+.+..|+.|+.++.+...+- .+ .-+.+|++-+.. ++.+..++..++..|+..+......
T Consensus 248 i~k~l~~ql~~i~~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl 327 (722)
T PF05557_consen 248 INKELKEQLAHIRELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWESL 327 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556666666666555443331 11 123344444433 3366667777777788877776654
Q ss_pred CCCcc--cCCCCCCCCcCCC--CCCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 003961 347 SNEKI--FPDASEYPSRLDG--MVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDE 422 (783)
Q Consensus 347 ~~~k~--~~da~e~~~r~~d--~~~~~sf~~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmde 422 (783)
..+.- +....++.+.... .....-.-..-.+...+..|+..+.++..++..+..++..|+..+..... .-..++.
T Consensus 328 ~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~-~~~RLer 406 (722)
T PF05557_consen 328 LQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKK-LIRRLER 406 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 33321 1111223222221 11111112333566677777777777777777777777777776443221 1112222
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003961 423 DSKIIEELRENNEYQRAQILHLENVLKQ 450 (783)
Q Consensus 423 d~k~IeELreenE~~R~~Is~lEraLK~ 450 (783)
. .--+..+++++|+++..++.....
T Consensus 407 q---~~L~~kE~d~LR~~L~syd~e~~~ 431 (722)
T PF05557_consen 407 Q---KALATKERDYLRAQLKSYDKEETT 431 (722)
T ss_dssp ----------------------------
T ss_pred H---HHHHHHHHHHHHHHHHHhhhhhcc
Confidence 1 122234799999999888876644
No 56
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.41 E-value=4.2 Score=50.83 Aligned_cols=89 Identities=24% Similarity=0.396 Sum_probs=46.9
Q ss_pred hhchHHHHHHhhcccCcccchhHHHHHHHHHhhhHHH----HHHHHHHhcccccCCcc--hHHHHHHHHHHHHHHhhhhh
Q 003961 256 RLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSE----LRRLQMELNRREDGDAN--DVVENLKRVVATLEKENNSL 329 (783)
Q Consensus 256 k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~se----i~rlq~~l~~~e~e~~~--~~~~sLk~~~~~L~kEn~tl 329 (783)
+.++.++++..-+.+......-.....+.++.++..+ +.-++.+++..+.++.. ..++++.+-+.-|+|+....
T Consensus 345 ~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~ 424 (1293)
T KOG0996|consen 345 KIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKA 424 (1293)
T ss_pred HHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555544444433333333333344444444433 33555566555555554 36666666666666666666
Q ss_pred HhhHHHHHHHHHHhc
Q 003961 330 KMEKTELVAALEKNR 344 (783)
Q Consensus 330 k~~~~eL~a~L~~~r 344 (783)
+.++.+++..++..+
T Consensus 425 ~~~~~e~e~~pe~~~ 439 (1293)
T KOG0996|consen 425 RRKKSELEKAPEKAR 439 (1293)
T ss_pred HhhHHHHHhCchhhH
Confidence 666666666655555
No 57
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.41 E-value=0.93 Score=52.53 Aligned_cols=120 Identities=23% Similarity=0.280 Sum_probs=65.5
Q ss_pred chHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHH
Q 003961 309 NDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDL 388 (783)
Q Consensus 309 ~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL 388 (783)
.+.++.|-.-|+.++ .|+.|-+.|+..|..+|...+.-+ .. -+.=.+..+.++++.|
T Consensus 45 ~~LNDRLA~YIekVR----~LEaqN~~L~~di~~lr~~~~~~t--------------s~-----ik~~ye~El~~ar~~l 101 (546)
T KOG0977|consen 45 QELNDRLAVYIEKVR----FLEAQNRKLEHDINLLRGVVGRET--------------SG-----IKAKYEAELATARKLL 101 (546)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhccCCC--------------cc-----hhHHhhhhHHHHHHHH
Confidence 345555555555433 244444555555666663322211 11 2333444577888999
Q ss_pred HHhHHHHHHHHHHHHHHHHHH-------HHHhh---hhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003961 389 KETCSERDKALQELTRLKQHL-------IEKAQ---EESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQT 451 (783)
Q Consensus 389 ~e~~~E~dKa~kEL~RLRqHL-------Le~E~---Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~ 451 (783)
.++..++.++.+|+.+|+--+ .+.+. .+.++.+.....|.++..+..+.+..|..+|-+++--
T Consensus 102 ~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~L 174 (546)
T KOG0977|consen 102 DETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRL 174 (546)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999888888888777776543 33322 1234445444555666555556666666655555443
No 58
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.40 E-value=3.6 Score=49.92 Aligned_cols=104 Identities=23% Similarity=0.304 Sum_probs=58.5
Q ss_pred HhHHHHHHHHH---HHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCcccchhHHHHHHHHHhhhHHHHHHHHHHhc
Q 003961 225 AYESQTRQLRM---ELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELN 301 (783)
Q Consensus 225 ~~~~~i~~l~~---el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~ 301 (783)
.|+.||+.|.. +||-+..++.+.--.+| ++|+.-+..-+-+.-+..++-.||.+|.-+|-+.-.+|-
T Consensus 103 ~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q----------~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~ 172 (1265)
T KOG0976|consen 103 HHESQIRILQNKCLRLEMEKQKLQDTIQGAQ----------DDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLH 172 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 45555655542 34444444444444444 445544555555666888999999999999999888775
Q ss_pred ccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhccc
Q 003961 302 RREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKS 346 (783)
Q Consensus 302 ~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~ 346 (783)
. -.+...+....+++ +-.|++.++ +.|+.+++..+..
T Consensus 173 n-k~~~lt~~~~q~~t----kl~e~~~en---~~le~k~~k~~e~ 209 (1265)
T KOG0976|consen 173 D-KNEELNEFNMEFQT----KLAEANREK---KALEEKLEKFKED 209 (1265)
T ss_pred h-hhhHHhHHHHHHHH----HHHHHHHHH---HHHHHHHHHHHHH
Confidence 3 23333344444444 334444433 3345555555533
No 59
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.30 E-value=4.2 Score=50.44 Aligned_cols=43 Identities=26% Similarity=0.275 Sum_probs=31.1
Q ss_pred ccccchhhhh-hhhHHHHHhhhcCCCccCCCCcccCCCCCCCCCcc
Q 003961 113 GEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSGDLSPSR 157 (783)
Q Consensus 113 ~engslk~nl-~~t~~al~~~r~~~~~~s~n~~~~~kg~~d~sp~r 157 (783)
.=|||=|-|| ||..-+|-+ ++.+.|++.+- +.|-|...+-|..
T Consensus 32 GPNGSGKSNlMDAISFVLGe-kss~LR~~~lk-dLIyg~~i~~~v~ 75 (1141)
T KOG0018|consen 32 GPNGSGKSNLMDAISFVLGE-KSSHLRVSHLK-DLIYGKPIRKPVT 75 (1141)
T ss_pred CCCCCchHHHHHHHHHHhcC-CCcccccchHH-HHhcCCccCCchh
Confidence 4599999996 577766655 66777777665 5677888877754
No 60
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.26 E-value=4.1 Score=49.02 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHhhhHHhHhHh
Q 003961 72 EIERYKAEIKRLQESEAEIKAL 93 (783)
Q Consensus 72 eie~ykaei~~lq~seaeikal 93 (783)
.+.+....+++|++-..+|.-+
T Consensus 282 ~~~~~~~~~~~L~~~~~e~~~~ 303 (908)
T COG0419 282 LLEELEEKIERLEELEREIEEL 303 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555554444443
No 61
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.05 E-value=0.0016 Score=77.05 Aligned_cols=37 Identities=38% Similarity=0.513 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcc
Q 003961 309 NDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRK 345 (783)
Q Consensus 309 ~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~ 345 (783)
++-+++|++.-..|+|+.+.|..+...|.+.|+.+-+
T Consensus 137 ~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k 173 (859)
T PF01576_consen 137 NEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQK 173 (859)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3456666666666777777777777777666665543
No 62
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.05 E-value=0.84 Score=54.79 Aligned_cols=48 Identities=33% Similarity=0.452 Sum_probs=34.5
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003961 406 KQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEE 457 (783)
Q Consensus 406 RqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qee 457 (783)
||+-|+.+-||+.|-+-+.+ |-.|+++|.||. .+||++-.++|-.|.+
T Consensus 379 rQReiE~qrEEerkkeie~r--Eaar~ElEkqRq--lewErar~qem~~Qk~ 426 (1118)
T KOG1029|consen 379 RQREIERQREEERKKEIERR--EAAREELEKQRQ--LEWERARRQEMLNQKN 426 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH--HHHHHHHHHHHHhhhh
Confidence 67778887777666555433 334568888888 8999999888887743
No 63
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.01 E-value=2.1 Score=50.78 Aligned_cols=225 Identities=21% Similarity=0.282 Sum_probs=121.7
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCcccchhHHHHHHHHHhhhHHHHHHHHHHhc
Q 003961 222 ERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELN 301 (783)
Q Consensus 222 ~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~ 301 (783)
+...+|.+||+||-+|..-|.-..++..++.--..-...++.+|..|+.+ ...||.++.
T Consensus 419 a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~e---------------------ne~Lq~Kl~ 477 (697)
T PF09726_consen 419 AISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQE---------------------NEQLQNKLQ 477 (697)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHH---------------------HHHHHHHHH
Confidence 34479999999999999888777776666543333334555555554443 334444443
Q ss_pred ccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCc----ccCCCCCCCCcCCCCCCCCCCCChhHH
Q 003961 302 RREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEK----IFPDASEYPSRLDGMVSSESFPGKEEM 377 (783)
Q Consensus 302 ~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k----~~~da~e~~~r~~d~~~~~sf~~kEem 377 (783)
.-. -..+.=|.-+.+||+.......++..||+.|..-|+.--.. -++-+-...+|..-.+... -..-+|
T Consensus 478 ~L~-----~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r--~r~~~l 550 (697)
T PF09726_consen 478 NLV-----QARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCR--QRRRQL 550 (697)
T ss_pred HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHH--HHHHHH
Confidence 211 12233344455555555555666666666665555331100 0000000111111111111 133577
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003961 378 EQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEE 457 (783)
Q Consensus 378 e~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qee 457 (783)
|..+..|+.||+........+..|+.-||.+- +| .++.++.|.-.+-.+++.-.|||..|..+.---.+
T Consensus 551 E~E~~~lr~elk~kee~~~~~e~~~~~lr~~~--~e---------~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKld 619 (697)
T PF09726_consen 551 ESELKKLRRELKQKEEQIRELESELQELRKYE--KE---------SEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLD 619 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hh---------hhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 77777888888877777777788777777652 11 12234566666667788888999888875332222
Q ss_pred H-hhh---------chHHHHhhHHHHHhhhhhHHHhHH
Q 003961 458 F-KMM---------NHSEIQKSKEIIDGLNNKLANCMR 485 (783)
Q Consensus 458 l-k~~---------n~~E~~~ske~iedL~~~L~~~me 485 (783)
| .-+ .+..+..=..+|.+||++++..|.
T Consensus 620 LfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a 657 (697)
T PF09726_consen 620 LFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA 657 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 111 112333344567778777777664
No 64
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=95.94 E-value=0.002 Score=76.39 Aligned_cols=40 Identities=30% Similarity=0.462 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 003961 373 GKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKA 413 (783)
Q Consensus 373 ~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E 413 (783)
.+++|...|..+...|...-..+-++.-+|..+|+. ++.+
T Consensus 469 e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e-~er~ 508 (859)
T PF01576_consen 469 EKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQE-IERE 508 (859)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 445666667777777777777778888888888887 5544
No 65
>PRK11637 AmiB activator; Provisional
Probab=95.93 E-value=3.5 Score=45.38 Aligned_cols=12 Identities=33% Similarity=0.581 Sum_probs=4.4
Q ss_pred HHhhhhHHHHHH
Q 003961 540 EVSRSEKEEILV 551 (783)
Q Consensus 540 e~~~kEKeei~~ 551 (783)
+..+.|++.++.
T Consensus 211 ~~~k~e~~~~l~ 222 (428)
T PRK11637 211 EQARNERKKTLT 222 (428)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 66
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.88 E-value=4.3 Score=46.03 Aligned_cols=88 Identities=24% Similarity=0.345 Sum_probs=63.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCC
Q 003961 279 ITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEY 358 (783)
Q Consensus 279 ~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~ 358 (783)
...+++++.++..+|+.-+ +..+.|..+|..++++.++++.++.+....|+.++
T Consensus 40 l~q~q~ei~~~~~~i~~~~------------~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~-------------- 93 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQ------------DQRAKLEKQLKSLETEIASLEAQLIETADDLKKLR-------------- 93 (420)
T ss_pred HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--------------
Confidence 3455555555555555443 45578999999999999999999999999988888
Q ss_pred CCcCCCCCCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003961 359 PSRLDGMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQH 408 (783)
Q Consensus 359 ~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqH 408 (783)
+ ...+++..+..|+..- +..+.++..-|..+-+-
T Consensus 94 --------~-----~I~~~~~~l~~l~~q~---r~qr~~La~~L~A~~r~ 127 (420)
T COG4942 94 --------K-----QIADLNARLNALEVQE---REQRRRLAEQLAALQRS 127 (420)
T ss_pred --------h-----hHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhc
Confidence 2 4557777777766555 45577777778777773
No 67
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.87 E-value=5.2 Score=46.88 Aligned_cols=101 Identities=22% Similarity=0.311 Sum_probs=70.2
Q ss_pred HHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHHHhHHHHHH
Q 003961 318 VVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKETCSERDK 397 (783)
Q Consensus 318 ~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e~~~E~dK 397 (783)
-++.|++...+|+.-.+...+.+.+|. . .+..|+.-|..|+.++.+--.|+++
T Consensus 260 ~~eslre~~~~L~~D~nK~~~y~~~~~----------------------~-----k~~~~~~~l~~l~~Eie~kEeE~e~ 312 (581)
T KOG0995|consen 260 KEESLREKKARLQDDVNKFQAYVSQMK----------------------S-----KKQHMEKKLEMLKSEIEEKEEEIEK 312 (581)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHH----------------------h-----hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777777777777777777776 2 5668999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh---hhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003961 398 ALQELTRLKQHLIEKAQ---EESEKMDEDSKIIEELRENNEYQRAQILHLENVLK 449 (783)
Q Consensus 398 a~kEL~RLRqHLLe~E~---Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK 449 (783)
..++.++||.. |+++. +|-+.|-.+ -++|..+++.+.-++..|-+.+.
T Consensus 313 lq~~~d~Lk~~-Ie~Q~iS~~dve~mn~E---r~~l~r~l~~i~~~~d~l~k~vw 363 (581)
T KOG0995|consen 313 LQKENDELKKQ-IELQGISGEDVERMNLE---RNKLKRELNKIQSELDRLSKEVW 363 (581)
T ss_pred HHHHHHHHHHH-HHhcCCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988 77774 333444443 23444445455554554444433
No 68
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.82 E-value=2.6 Score=44.54 Aligned_cols=33 Identities=30% Similarity=0.287 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 003961 381 LQKLEKDLKETCSERDKALQELTRLKQHLIEKA 413 (783)
Q Consensus 381 lq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E 413 (783)
+..|.-.....+.+.+|+.-|+.+++..+.+.+
T Consensus 19 ~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~ 51 (239)
T COG1579 19 KDRLEPRIKEIRKALKKAKAELEALNKALEALE 51 (239)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555666666666666666665554
No 69
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.81 E-value=7.5 Score=48.24 Aligned_cols=70 Identities=19% Similarity=0.215 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHH
Q 003961 434 NEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEA 510 (783)
Q Consensus 434 nE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA 510 (783)
...+...|+.+|+.++..-+.++ .++.++..+|.-+++++.+.-...+.+-.+..+||--.++..-|+..
T Consensus 764 ~k~~~~~i~~lE~~~~d~~~~re-------~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~ 833 (1174)
T KOG0933|consen 764 LKKCEDKISTLEKKMKDAKANRE-------RRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISS 833 (1174)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666555444 34445555566666666655555555555555555555555554433
No 70
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.80 E-value=2.8 Score=52.87 Aligned_cols=73 Identities=14% Similarity=0.136 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh-----hhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003961 380 SLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQE-----ESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTL 452 (783)
Q Consensus 380 slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~E-----e~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~ 452 (783)
.+..|..+|.++..+++.+..++..|.+++-....+ .+..+......+...+......+..+...+..+....
T Consensus 743 ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~ 820 (1353)
T TIGR02680 743 RIAELDARLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAA 820 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666665554444332 1233444444455555455555555555555555543
No 71
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=95.79 E-value=0.0024 Score=73.67 Aligned_cols=123 Identities=29% Similarity=0.409 Sum_probs=0.0
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCcccchhHHHHHHHHHhh---hHHHH
Q 003961 217 RSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNG---KLSEL 293 (783)
Q Consensus 217 ~~~aa~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~e---k~sei 293 (783)
..++-.-+.+..++++|+.+|.+--.-..+...++++=.+-...++.+...|...- -++..++.||++ +-...
T Consensus 235 ~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A----~~a~~LrDElD~lR~~a~r~ 310 (713)
T PF05622_consen 235 QHLSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEA----REARALRDELDELREKADRA 310 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHHHHHH
Confidence 33333345566778888888876555555555555555555555666655554432 356667776654 33344
Q ss_pred HHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcc
Q 003961 294 RRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRK 345 (783)
Q Consensus 294 ~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~ 345 (783)
.+|+.++.+-... =.-+.-||+.++.|+..|..|-.++..|+..|...+.
T Consensus 311 ~klE~~ve~YKkK--Led~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~ 360 (713)
T PF05622_consen 311 DKLENEVEKYKKK--LEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARA 360 (713)
T ss_dssp ----------------------------------------------------
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4555555443221 1247789999999999999999999999999988763
No 72
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.73 E-value=4.8 Score=48.79 Aligned_cols=87 Identities=20% Similarity=0.239 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHHHhHHH
Q 003961 315 LKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKETCSE 394 (783)
Q Consensus 315 Lk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e~~~E 394 (783)
|+.-..+|.-|..||--++..|..+|.-.|.-.|+.. ..++..+ .+-|-|-+.+..|...|+|++.-
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~k-----------t~ie~~~--~q~e~~isei~qlqarikE~q~k 501 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQK-----------TEIEEVT--KQRELMISEIDQLQARIKELQEK 501 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHH-----------HHHHHhh--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777778888888888888888888877773322111 1122222 13344445566777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 003961 395 RDKALQELTRLKQHLIEKAQ 414 (783)
Q Consensus 395 ~dKa~kEL~RLRqHLLe~E~ 414 (783)
.-++..|-.-|-..|..+..
T Consensus 502 l~~l~~Ekq~l~~qlkq~q~ 521 (1118)
T KOG1029|consen 502 LQKLAPEKQELNHQLKQKQS 521 (1118)
T ss_pred HHhhhhHHHHHHHHHHHhhh
Confidence 77777777777777666653
No 73
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.73 E-value=7 Score=47.83 Aligned_cols=218 Identities=22% Similarity=0.236 Sum_probs=100.2
Q ss_pred ChhHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHhhhh-------hhhhhhhhHHHHHHHHhHHHHHHHH
Q 003961 373 GKEEMEQSLQKLEKDLKETCSERDK----ALQELTRLKQHLIEKAQEE-------SEKMDEDSKIIEELRENNEYQRAQI 441 (783)
Q Consensus 373 ~kEeme~slq~L~~eL~e~~~E~dK----a~kEL~RLRqHLLe~E~Ee-------~ekmded~k~IeELreenE~~R~~I 441 (783)
++...+.+.+.+.+++..+.....+ +..=+..+++|+.+++-+= ++-+++.. -||.+.-..++.-
T Consensus 327 qkd~~~~~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~e----qLr~elaql~a~r 402 (980)
T KOG0980|consen 327 QKDPRELQIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQE----QLRNELAQLLASR 402 (980)
T ss_pred cCChhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 4556666666666666666554443 3333556677776665311 13333332 2333333333444
Q ss_pred HHHHHHHH--HHHH-----HH---HHHhhhc---hHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHH
Q 003961 442 LHLENVLK--QTLA-----KQ---EEFKMMN---HSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEI 508 (783)
Q Consensus 442 s~lEraLK--~~~a-----~q---eelk~~n---~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~ 508 (783)
.++|++.. .++. .+ +.++-.. ..++.++...-.|.-++|...-.++.-...++.||.--|++.+.+.
T Consensus 403 ~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~ 482 (980)
T KOG0980|consen 403 TQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAA 482 (980)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444441 1111 00 1111111 1244444455555555555544455544556666665555554332
Q ss_pred -----------HHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHH
Q 003961 509 -----------EAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKL 577 (783)
Q Consensus 509 -----------EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kL 577 (783)
++-+.+++|++.+..+++.|...|+-..+... ..+..+...+.+-.+..+++..+. ++.+-+
T Consensus 483 ~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~---~~~~~l~~~l~~KD~~~~~~~~~~----~e~~~~ 555 (980)
T KOG0980|consen 483 GRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHN---NQLAQLEDLLKQKDRLAAELVARE----EEREAL 555 (980)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH---HHHHHHHHHHHhhHHHHHHHHHHH----HHHHHH
Confidence 22367777777777777766655443333321 222222222222222222222221 222336
Q ss_pred HHHHHHHHHHHhhccCCcchhhhH
Q 003961 578 RLAVEQSMTRLNRMSVDSDFLVDR 601 (783)
Q Consensus 578 R~ALeqsl~RL~~ms~dsD~~VDR 601 (783)
|.-++.++..|.-.+.+++.--+.
T Consensus 556 ~~e~e~si~ql~l~~~~~~ea~~t 579 (980)
T KOG0980|consen 556 RLEAERSINQLELDSSASTEAGIT 579 (980)
T ss_pred HHHHHhhHHHhhcccccchHHHHH
Confidence 666666666666655545443333
No 74
>PRK09039 hypothetical protein; Validated
Probab=95.66 E-value=0.67 Score=50.24 Aligned_cols=55 Identities=27% Similarity=0.354 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHH--HhcccccCCcchHHHHHHHHHHHHHHhhhhhHhh
Q 003961 278 EITEMRKELNGKLSELRRLQM--ELNRREDGDANDVVENLKRVVATLEKENNSLKME 332 (783)
Q Consensus 278 ~~~~~~~el~ek~sei~rlq~--~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~ 332 (783)
+++....||++--++|..|=. .|.+....+....+..|+..+..+++++..|+..
T Consensus 47 ~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~ 103 (343)
T PRK09039 47 EISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQAL 103 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555544432 2222233333344455555555444444444333
No 75
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=95.65 E-value=3.3 Score=45.07 Aligned_cols=216 Identities=24% Similarity=0.327 Sum_probs=114.6
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCC
Q 003961 277 IEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDAS 356 (783)
Q Consensus 277 ~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~ 356 (783)
.+..+.++||+.++++++..-.+|+..-- +--+-+.+|+..-..+-.+..+|+..++++++.+..++.-. ..+.-+..
T Consensus 23 ~e~~ekR~El~~~~~~~~ekRdeln~kvr-E~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~-~~l~e~~~ 100 (294)
T COG1340 23 EELKEKRDELRKEASELAEKRDELNAKVR-ELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEY-RELKEKRN 100 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhh
Confidence 34455556666666666666666665221 11234556666666677777788888888888877765221 11111111
Q ss_pred CCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHhh--hhhhhhhhhhHHHHHHH
Q 003961 357 EYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLK---ETCSERDKALQELTRLKQHLIEKAQ--EESEKMDEDSKIIEELR 431 (783)
Q Consensus 357 e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~---e~~~E~dKa~kEL~RLRqHLLe~E~--Ee~ekmded~k~IeELr 431 (783)
... .. -+..+.++.-++.|+.... =+-.+=.+..+.+.+|+..|-+... +..++..+--..|++++
T Consensus 101 ~~~-------~~--~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk 171 (294)
T COG1340 101 EFN-------LG--GRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELK 171 (294)
T ss_pred hhh-------cc--CCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 00 1233444444444433222 2234456788889998888776653 12223332222333333
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHH
Q 003961 432 ENNEYQRAQILHLENVLKQTLAKQEEFKMMN-HSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEI 508 (783)
Q Consensus 432 eenE~~R~~Is~lEraLK~~~a~qeelk~~n-~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~ 508 (783)
....-+...|..|=...- + --..|+. -.+...++..++.+..++......++..+.++-|+|.=|-.|.-.+
T Consensus 172 ~~~~e~~eki~~la~eaq-e----~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~i 244 (294)
T COG1340 172 KKAREIHEKIQELANEAQ-E----YHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKI 244 (294)
T ss_pred HHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 333222222222111100 0 0011111 2466667778888888888888888888888888888877776555
No 76
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=95.64 E-value=0.025 Score=45.47 Aligned_cols=41 Identities=22% Similarity=0.496 Sum_probs=32.3
Q ss_pred hhhHHHHHHHHHHHHhcCC---chHHHHHHHHhcCCCHHHHHHh
Q 003961 598 LVDRRIVIKLLVTYFQRNH---SKEVLDLMVRMLGFSDEDKQRI 638 (783)
Q Consensus 598 ~VDRRIVtkLLLTYf~R~~---sKEVL~LMArMLgFSDEEK~ri 638 (783)
.+|---+.|+++.||+... .+.++-.||+||+||++|+++|
T Consensus 2 ~~~~eYLKNvl~~fl~~~~~~~~~~llpvi~tlL~fs~~e~~~i 45 (46)
T PF01465_consen 2 GINLEYLKNVLLQFLESREPSEREQLLPVIATLLKFSPEEKQKI 45 (46)
T ss_dssp -HHHHHHHHHHHHHHTTSS---HHHHHHHHHHHTT--HHHHHHH
T ss_pred chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHCCCHHHHHhh
Confidence 3566678999999999665 3369999999999999999886
No 77
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=95.52 E-value=3.5 Score=47.39 Aligned_cols=150 Identities=21% Similarity=0.376 Sum_probs=103.8
Q ss_pred HHHHHhhchHHHHHHhhcccCcccchhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhH
Q 003961 251 LQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLK 330 (783)
Q Consensus 251 lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk 330 (783)
|+|.--+|+- |+.||-+-.|--+-|-.|+-.=----..++.|||..++.+ -.-|.+.-||+-|+.|=..+-...
T Consensus 309 leedmaLNEv----L~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQq--vfvDiinkLk~niEeLIedKY~vi 382 (527)
T PF15066_consen 309 LEEDMALNEV----LQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQ--VFVDIINKLKENIEELIEDKYRVI 382 (527)
T ss_pred cHHHHHHHHH----HHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHHHhHhHhh
Confidence 3444444443 4456666666656665555432223345778999998743 344788889999999999988888
Q ss_pred hhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003961 331 MEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLI 410 (783)
Q Consensus 331 ~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLL 410 (783)
.++++++-.|..+. -.+..-++.|.|++.|.+-++-||.+++.+-+
T Consensus 383 LEKnd~~k~lqnLq----------------------------------e~la~tqk~LqEsr~eKetLqlelkK~k~nyv 428 (527)
T PF15066_consen 383 LEKNDIEKTLQNLQ----------------------------------EALANTQKHLQESRNEKETLQLELKKIKANYV 428 (527)
T ss_pred hhhhhHHHHHHHHH----------------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHH
Confidence 88888887776666 22556678899999999999999999999999
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003961 411 EKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQT 451 (783)
Q Consensus 411 e~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~ 451 (783)
..++ +-+.|+.+.+.++-. -..++++|-+.
T Consensus 429 ~LQE----------ry~~eiQqKnksvsq-clEmdk~LskK 458 (527)
T PF15066_consen 429 HLQE----------RYMTEIQQKNKSVSQ-CLEMDKTLSKK 458 (527)
T ss_pred HHHH----------HHHHHHHHhhhHHHH-HHHHHHHhhhh
Confidence 9973 334455555554444 35677777654
No 78
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.43 E-value=7.8 Score=45.85 Aligned_cols=63 Identities=16% Similarity=0.269 Sum_probs=35.7
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHhccc-----------ccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHH
Q 003961 277 IEITEMRKELNGKLSELRRLQMELNRR-----------EDGDANDVVENLKRVVATLEKENNSLKMEKTELVAA 339 (783)
Q Consensus 277 ~~~~~~~~el~ek~sei~rlq~~l~~~-----------e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~ 339 (783)
.++..|..||+++..+|..-|...--. ....+-+....+.-.|..-+-|.+.|..--..-+++
T Consensus 15 ~dle~LQreLd~~~~~l~~~Q~~S~~srk~L~e~trefkk~~pe~k~k~~~~llK~yQ~EiD~LtkRsk~aE~a 88 (629)
T KOG0963|consen 15 FDLERLQRELDAEATEIAQRQDESEISRKRLAEETREFKKNTPEDKLKMVNPLLKSYQSEIDNLTKRSKFAEAA 88 (629)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 457788899999988887766543111 122223455555555555555555554443333333
No 79
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.42 E-value=10 Score=47.17 Aligned_cols=98 Identities=23% Similarity=0.249 Sum_probs=65.7
Q ss_pred hhhhHHHhHHHHHhhchHHHHHHhhcccCcccchhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHH
Q 003961 243 KFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATL 322 (783)
Q Consensus 243 k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L 322 (783)
++..+|.+|+.-++-=.-+-.||.+|+ -++.-...|..+|+-|.-++--++-.+...+.+-..+.++.+...++.+
T Consensus 678 ~l~~~~~~~~~~q~el~~le~eL~~le----~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~ 753 (1174)
T KOG0933|consen 678 KLKQAQKELRAIQKELEALERELKSLE----AQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEES 753 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHH
Confidence 445555566655555555666666664 3556677899999999888887777776666555556777777777777
Q ss_pred HHhhhhhHhhHHHHHHHHHHhc
Q 003961 323 EKENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 323 ~kEn~tlk~~~~eL~a~L~~~r 344 (783)
+.+.-+....+..-..++.+.-
T Consensus 754 ~~~Ike~~~~~k~~~~~i~~lE 775 (1174)
T KOG0933|consen 754 EQQIKEKERALKKCEDKISTLE 775 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7766666666666666664443
No 80
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.38 E-value=7.9 Score=45.65 Aligned_cols=41 Identities=20% Similarity=0.184 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcc
Q 003961 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKI 351 (783)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~ 351 (783)
-+..+-..+.+|.+|+...-..+.+|+..|..+++-.....
T Consensus 30 r~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~ 70 (617)
T PF15070_consen 30 RMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPP 70 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 45677788889999999999999999999999886544433
No 81
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.37 E-value=7.1 Score=45.01 Aligned_cols=322 Identities=18% Similarity=0.202 Sum_probs=150.0
Q ss_pred cchhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHh-----------hhhhHhhHHHHHHHHHH
Q 003961 274 KTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKE-----------NNSLKMEKTELVAALEK 342 (783)
Q Consensus 274 kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kE-----------n~tlk~~~~eL~a~L~~ 342 (783)
.....+..|.+.|..=-..+.....--+..+-..+.+.+..++..+..|+.. ..+|-.+..+|..-...
T Consensus 158 ~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~ 237 (560)
T PF06160_consen 158 SYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYRE 237 (560)
T ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3333444444444444344433333233334444556777777777666554 34566677777777777
Q ss_pred hcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHH-----HHhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 003961 343 NRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDL-----KETCSERDKALQELTRLKQHLIEKAQEES 417 (783)
Q Consensus 343 ~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL-----~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ 417 (783)
|... |=.+. +.+++. .-..|+.++..+...| .+.....+....+++.|-.- |++|-+.
T Consensus 238 m~~~-gy~l~---------~~~i~~-----~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~-le~E~~A- 300 (560)
T PF06160_consen 238 MEEE-GYYLE---------HLDIEE-----EIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDI-LEKEVEA- 300 (560)
T ss_pred HHHC-CCCCC---------CCCHHH-----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-
Confidence 7732 11111 111211 2223333333333333 22333333333333333332 3332211
Q ss_pred hhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---hH---HHHhhHHHHHhhhhhHHHhHHHHHhhh
Q 003961 418 EKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMN---HS---EIQKSKEIIDGLNNKLANCMRTIEAKN 491 (783)
Q Consensus 418 ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n---~~---E~~~ske~iedL~~~L~~~mealeAKn 491 (783)
-..+......+...|.|+....+.-+..-+.++... +. ....+..++..+..++......+....
T Consensus 301 ---------k~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~ 371 (560)
T PF06160_consen 301 ---------KKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQ 371 (560)
T ss_pred ---------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 112222333444445554444443333333332222 22 334455566666666655555555554
Q ss_pred hhHhhHHHHHHHHHHHH-------HHh----hhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhh--hHHHHHHhhhHHHH
Q 003961 492 VELLNLQTALGQYFAEI-------EAK----GHLERELALAREESAKLSEYLKNADQRAEVSRS--EKEEILVKLSHSEK 558 (783)
Q Consensus 492 vEl~NLQtALgqfqAE~-------EA~----ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~k--EKeei~~KLs~~E~ 558 (783)
+--.-++.-|....... ..- ..|..+-..||+.+..+...|-..++.++...- ==+.++..+..+..
T Consensus 372 ~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~~ 451 (560)
T PF06160_consen 372 VPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVSD 451 (560)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 43333333333333222 211 233333344444444444444444444433200 00012223333444
Q ss_pred HHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHhcC--CchHHH
Q 003961 559 MLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRMSVDSDFLVDRRIVIKLLVTYFQRN--HSKEVL 621 (783)
Q Consensus 559 ~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ms~dsD~~VDRRIVtkLLLTYf~R~--~sKEVL 621 (783)
.+..+...+.+..-+...+.+.|+.+-..+.......+.+||--.++--++-|=+|- ...+|=
T Consensus 452 ~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~~A~L~E~~iQYaNRYR~~~~~v~ 516 (560)
T PF06160_consen 452 EIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELIDNATLAEQLIQYANRYRSDNPEVD 516 (560)
T ss_pred HHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHH
Confidence 455555555666666777777777777776666667788888888888888888854 333554
No 82
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.34 E-value=11 Score=46.91 Aligned_cols=49 Identities=27% Similarity=0.277 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 003961 374 KEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDE 422 (783)
Q Consensus 374 kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmde 422 (783)
.+..+..++....+|+..+...++...+..-++.-|=-+..-+.++++.
T Consensus 856 l~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~~lek~~~~~ 904 (1200)
T KOG0964|consen 856 LESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAKNLEKEKKDN 904 (1200)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444555666666677777777777777777666544444444445554
No 83
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.30 E-value=6.9 Score=44.45 Aligned_cols=132 Identities=20% Similarity=0.224 Sum_probs=69.7
Q ss_pred ChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003961 373 GKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTL 452 (783)
Q Consensus 373 ~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~ 452 (783)
.|+++|+.-.....||..++.|+.-..+|+..+|+.++--.. +--...++ -..|+.++...-.+.-+|+..+---.
T Consensus 96 ~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ-~lar~t~Q---~q~lqtrl~~l~~qr~ql~aq~qsl~ 171 (499)
T COG4372 96 EKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQ-ELARLTKQ---AQDLQTRLKTLAEQRRQLEAQAQSLQ 171 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666656666667777777777777777777766543321 11111111 11222222222222222222111111
Q ss_pred HHHHHHh----h--hchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHH
Q 003961 453 AKQEEFK----M--MNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEI 508 (783)
Q Consensus 453 a~qeelk----~--~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~ 508 (783)
+.+-+|. . ....++..--++|+.--+.|++--+++.+.+.|++|++.|+.|...++
T Consensus 172 a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i 233 (499)
T COG4372 172 ASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAI 233 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111110 0 001122222345777778888888999999999999999999988876
No 84
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=95.26 E-value=2.4 Score=48.06 Aligned_cols=57 Identities=23% Similarity=0.323 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHH
Q 003961 495 LNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILV 551 (783)
Q Consensus 495 ~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~ 551 (783)
.--+.|+..|....-...-+...+..++.......++|..|++.+-.....|+.++.
T Consensus 200 ~~~~~A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~ 256 (511)
T PF09787_consen 200 EERPKALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIE 256 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 333445555555554444444555555555555555566666554444444444444
No 85
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=95.24 E-value=7.3 Score=44.37 Aligned_cols=101 Identities=24% Similarity=0.286 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHHHh-hhhhhhHHHhHHHHHhh-----chHHHHHHhhcc--c--Ccc----------cchhHHHHHHHH
Q 003961 226 YESQTRQLRMELEQQ-RNKFADVQLKLQEEQRL-----NESFQDELKSLK--M--DKD----------KTSIEITEMRKE 285 (783)
Q Consensus 226 ~~~~i~~l~~el~~~-~~k~~~~~~~lqee~k~-----n~~fqe~l~~lk--~--~~~----------kts~~~~~~~~e 285 (783)
...+++.++.+|+.- +++...++. +.+-+. .+++++.|..|+ + ..+ +-..+++..+.+
T Consensus 121 ~~~El~~l~~~l~~l~~~~~~~~~~--~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl~rtl~~e~~~~~ 198 (511)
T PF09787_consen 121 LDQELRRLRRQLEELQNEKSRILSD--ESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEFLKRTLKKEIERQE 198 (511)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCch--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666655 333322211 111111 167777666665 2 211 123344556777
Q ss_pred HhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhH
Q 003961 286 LNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLK 330 (783)
Q Consensus 286 l~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk 330 (783)
|.+...-++++...+.. ..+....++.++....+.+.|-..||
T Consensus 199 L~~~~~A~~~~~~~l~~--~~e~~~~l~l~~~~~~~~~~el~~Yk 241 (511)
T PF09787_consen 199 LEERPKALRHYIEYLRE--SGELQEQLELLKAEGESEEAELQQYK 241 (511)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 77777777777777653 33344578888888888888888888
No 86
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.20 E-value=10 Score=46.33 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=24.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHH
Q 003961 219 LAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQ 255 (783)
Q Consensus 219 ~aa~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~ 255 (783)
+.|.+.+|-.+-..-.+.-+++++++.+++-++-++.
T Consensus 630 ~i~k~ls~~~eee~~~~~~~k~~e~l~~~~~kyK~lI 666 (970)
T KOG0946|consen 630 LIAKLLSSKTEEEEQTQLAEKYHEELDDIQQKYKGLI 666 (970)
T ss_pred HHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666655555555667788888888887754443
No 87
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=95.12 E-value=14 Score=46.99 Aligned_cols=216 Identities=20% Similarity=0.225 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHH
Q 003961 380 SLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEEL---RENNEYQRAQILHLENVLKQTLAKQE 456 (783)
Q Consensus 380 slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeEL---reenE~~R~~Is~lEraLK~~~a~qe 456 (783)
.++.|+.++.+.+.+......++..+.....-+..+..+.+.+..++..+- .....--+++|-+|...|+..+.-..
T Consensus 879 ~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l~~~~~~~~ 958 (1294)
T KOG0962|consen 879 RLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLLHQIYKLNE 958 (1294)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 345666778888888888888888887776655544444444432222220 00111224667777777776543332
Q ss_pred HH-----hhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-H
Q 003961 457 EF-----KMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLS-E 530 (783)
Q Consensus 457 el-----k~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls-~ 530 (783)
.. .....+.+..+.+.++++.+++.+.-.-++..+..=.||...|.-+|-+..- .++++++......+.+.- .
T Consensus 959 ~~~~~~~~~~~~~~l~~~~e~l~~~~~~~~~~~~~l~~~~~~er~l~dnl~~~~l~~q~-~e~~re~~~ld~Qi~~~~~~ 1037 (1294)
T KOG0962|consen 959 CFEQYGFDDLRIAQLSESEEHLEERDNEVNEIKQKIRNQYQRERNLKDNLTLRNLERKL-KELERELSELDKQILEADIK 1037 (1294)
T ss_pred HHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHH
Confidence 21 1222556677777788888887777666666666667777777766654432 355666665555533311 1
Q ss_pred HHHHhhhH----HHHhhhhHHHHHHhhhHHHHHHHhhhhh----------------hhh------hHHhHHHHHHHHHHH
Q 003961 531 YLKNADQR----AEVSRSEKEEILVKLSHSEKMLAEGKGR----------------ANK------LEEDNAKLRLAVEQS 584 (783)
Q Consensus 531 ~Lk~a~q~----ie~~~kEKeei~~KLs~~E~~l~e~K~~----------------~~K------L~eDn~kLR~ALeqs 584 (783)
+-++.-+. .+....|+..+++-..+.+....-.+.. +++ ...|..+.+.||+.|
T Consensus 1038 ~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~~~~~kd~~~nyr~~~ie~~tt~~~~~DL~ky~~aLD~A 1117 (1294)
T KOG0962|consen 1038 SVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELREKDFKDAEKNYRKALIELKTTELSNKDLDKYYKALDKA 1117 (1294)
T ss_pred HHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111111 1222233333333333333332222221 122 348999999999999
Q ss_pred HHHHhhccCCcc
Q 003961 585 MTRLNRMSVDSD 596 (783)
Q Consensus 585 l~RL~~ms~dsD 596 (783)
+.+++.|-|...
T Consensus 1118 im~fHs~KMeei 1129 (1294)
T KOG0962|consen 1118 IMQFHSMKMEEI 1129 (1294)
T ss_pred HHHHHHHHHHHH
Confidence 999999987763
No 88
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.94 E-value=6.1 Score=49.67 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=36.8
Q ss_pred HHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHh
Q 003961 464 SEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAK 511 (783)
Q Consensus 464 ~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ 511 (783)
++-.+.+...++++......-++|+..++-..+-|.|+.+--+.+.-+
T Consensus 1549 s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a 1596 (1758)
T KOG0994|consen 1549 SEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLA 1596 (1758)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 345566777888888888888888888888888888888776666544
No 89
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.71 E-value=0.0086 Score=69.30 Aligned_cols=125 Identities=26% Similarity=0.307 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003961 381 LQKLEKDLKETCSERD---KALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEE 457 (783)
Q Consensus 381 lq~L~~eL~e~~~E~d---Ka~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qee 457 (783)
.+.|+.+|-+.++..+ |+..++.+.|+.|=+.. .+.. -+.+|++.|.-.-.++..||..|+...+-.
T Consensus 293 a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~-----~lk~---qvk~Lee~N~~l~e~~~~LEeel~~~~~~~-- 362 (713)
T PF05622_consen 293 ARALRDELDELREKADRADKLENEVEKYKKKLEDLE-----DLKR---QVKELEEDNAVLLETKAMLEEELKKARALK-- 362 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--
Confidence 4466666666655544 46668888888865543 2222 345677666555666778888887764432
Q ss_pred HhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 003961 458 FKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREE 524 (783)
Q Consensus 458 lk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree 524 (783)
..+...+.+|.+|.+++......++.-.-++..|+.-+.....+ +++|..+...+++.
T Consensus 363 ------~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~e---ke~l~~e~~~L~e~ 420 (713)
T PF05622_consen 363 ------SQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEE---KERLQEERDSLRET 420 (713)
T ss_dssp -------------------------------------------------------------------
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 23344556666776666665443333333444454444433322 24455555444443
No 90
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=94.67 E-value=15 Score=45.17 Aligned_cols=30 Identities=27% Similarity=0.227 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhhHHHHHHH
Q 003961 310 DVVENLKRVVATLEKENNSLKMEKTELVAA 339 (783)
Q Consensus 310 ~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~ 339 (783)
..++...++.-+.++.-+.+|..|.+|...
T Consensus 410 ~~~ee~e~~~l~~e~ry~klkek~t~l~~~ 439 (980)
T KOG0980|consen 410 VLVEEAENKALAAENRYEKLKEKYTELRQE 439 (980)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666665543
No 91
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.52 E-value=9 Score=41.98 Aligned_cols=139 Identities=27% Similarity=0.375 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHHH
Q 003961 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKE 390 (783)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e 390 (783)
..+.|++-+..|+.||..|..+...|-..-.+ |-.+|. .|-.+
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~----------------------------~EekEq------qLv~d--- 203 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQLKTETDT----------------------------YEEKEQ------QLVLD--- 203 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhh----------------------------ccHHHH------HHHHH---
Confidence 36899999999999999998887766432211 112222 12111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhch---HHHH
Q 003961 391 TCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNH---SEIQ 467 (783)
Q Consensus 391 ~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~---~E~~ 467 (783)
-..+..-|...+..|-.-|--+- |+- . -.+++.-+...+|..+++.+|+-++..+++...-. .-..
T Consensus 204 cv~QL~~An~qia~LseELa~k~-Ee~---~-------rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~ 272 (306)
T PF04849_consen 204 CVKQLSEANQQIASLSEELARKT-EEN---R-------RQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQR 272 (306)
T ss_pred HHHHhhhcchhHHHHHHHHHHHH-HHH---H-------HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 11223333334444433322221 111 1 11223445567777788888877776666432211 1122
Q ss_pred hhHHHHHhhhhhHHHhHHHHHhhhhhHhhH
Q 003961 468 KSKEIIDGLNNKLANCMRTIEAKNVELLNL 497 (783)
Q Consensus 468 ~ske~iedL~~~L~~~mealeAKnvEl~NL 497 (783)
.+..++.+|+.+-+.|+..+-....|+-+|
T Consensus 273 ~L~aEL~elqdkY~E~~~mL~EaQEElk~l 302 (306)
T PF04849_consen 273 QLQAELQELQDKYAECMAMLHEAQEELKTL 302 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355677788888888887776656666555
No 92
>PF13514 AAA_27: AAA domain
Probab=94.47 E-value=17 Score=44.93 Aligned_cols=16 Identities=13% Similarity=0.179 Sum_probs=10.8
Q ss_pred cCCCHHHHHHhhhccc
Q 003961 628 LGFSDEDKQRIGMAQQ 643 (783)
Q Consensus 628 LgFSDEEK~riGL~~q 643 (783)
=++|.--+..+.|+-+
T Consensus 1024 ~~LS~GT~dQLYLALR 1039 (1111)
T PF13514_consen 1024 EELSRGTRDQLYLALR 1039 (1111)
T ss_pred HHhCHHHHHHHHHHHH
Confidence 3457777777777766
No 93
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.40 E-value=16 Score=44.77 Aligned_cols=185 Identities=18% Similarity=0.191 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 003961 376 EMEQSLQKLEKDLKETCSERDKALQELTRLKQHLI-------EKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVL 448 (783)
Q Consensus 376 eme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLL-------e~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraL 448 (783)
+|...-+.|+.++.+...+.-+...++.-||-.|= ++-. .-++-.-..+++.-++.+++...++---+.+.|
T Consensus 682 ~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q-~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L 760 (970)
T KOG0946|consen 682 ELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQ-GAEASKTQNEELNAALSENKKLENDQELLTKEL 760 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHh-HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555555555554431 1111 111222222233333444444444444444555
Q ss_pred --HHHHHHH-------HHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHH
Q 003961 449 --KQTLAKQ-------EEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELA 519 (783)
Q Consensus 449 --K~~~a~q-------eelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa 519 (783)
|.++..+ -++++....-...-.+++..|+++ +.-++..+.++|.-+-+|..++++.-+
T Consensus 761 ~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~-------l~e~~~~l~~~q~e~~~~keq~~t~~~------ 827 (970)
T KOG0946|consen 761 NKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKN-------LSEESTRLQELQSELTQLKEQIQTLLE------ 827 (970)
T ss_pred HhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHh-------hhhhhhHHHHHHHHHHHHHHHHHHHHH------
Confidence 2222211 113333333444445555555544 344556788999999999888866422
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHH
Q 003961 520 LAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLR 578 (783)
Q Consensus 520 ~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR 578 (783)
.+.+.+..|......-.....|+..|-+||+.....++.+++.+.++.+...-|.
T Consensus 828 ----~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~ 882 (970)
T KOG0946|consen 828 ----RTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLE 882 (970)
T ss_pred ----HHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHH
Confidence 2222222222222221223466666777888888777777777777766654444
No 94
>PRK09039 hypothetical protein; Validated
Probab=94.39 E-value=7.2 Score=42.55 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=20.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhHH
Q 003961 512 GHLERELALAREESAKLSEYLKNADQRA 539 (783)
Q Consensus 512 ErLe~ELa~aree~a~Ls~~Lk~a~q~i 539 (783)
.+|.++++++|..++.|...|.+++.+.
T Consensus 140 ~~L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 140 ELLNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777778777777777777766664
No 95
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=94.18 E-value=14 Score=42.67 Aligned_cols=30 Identities=20% Similarity=0.482 Sum_probs=18.8
Q ss_pred cCcccchhHHHHHHHHHhhhHHHHHHHHHH
Q 003961 270 MDKDKTSIEITEMRKELNGKLSELRRLQME 299 (783)
Q Consensus 270 ~~~~kts~~~~~~~~el~ek~sei~rlq~~ 299 (783)
++...+..++..|++.+..-+.-|..|..+
T Consensus 249 ~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~ 278 (569)
T PRK04778 249 LDHLDIEKEIQDLKEQIDENLALLEELDLD 278 (569)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhcChH
Confidence 555566667777777666666666655543
No 96
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=94.13 E-value=12 Score=43.81 Aligned_cols=140 Identities=17% Similarity=0.223 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHH-HHHHHHHHHHHHHhH
Q 003961 314 NLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEM-EQSLQKLEKDLKETC 392 (783)
Q Consensus 314 sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEem-e~slq~L~~eL~e~~ 392 (783)
..++-++-|.++...++.+..+.+.+|..-|...+- . +. +.+.+ +++|..|...|..++
T Consensus 191 ~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l--~-----------~~-------~~~~~~~~~L~~l~~ql~~a~ 250 (754)
T TIGR01005 191 SNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDL--L-----------MG-------NNATLATQQLAELNTELSRAR 250 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--c-----------cc-------CCccchHHHHHHHHHHHHHHH
Confidence 334445555566666666677778888888744221 1 00 11112 255778888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh--hhh---hhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHH
Q 003961 393 SERDKALQELTRLKQHLIEKAQEES--EKM---DEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQ 467 (783)
Q Consensus 393 ~E~dKa~kEL~RLRqHLLe~E~Ee~--ekm---ded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~ 467 (783)
.++..+...+..|+..+-....... +.. .....+|.+|+.+. ..+++.+......- .-+.-.+.
T Consensus 251 ~~~~~a~a~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l-------~~l~~~~~~l~~~y----~~~hP~v~ 319 (754)
T TIGR01005 251 ANRAAAEGTADSVKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQ-------AELRATIADLSTTM----LANHPRVV 319 (754)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccchhhhhcCcccccHHHHHHHHHH-------HHHHHHHHHHHHhh----CCCCHHHH
Confidence 8888888888888877532111000 000 01124566665543 33343333221110 01234677
Q ss_pred hhHHHHHhhhhhHHHhH
Q 003961 468 KSKEIIDGLNNKLANCM 484 (783)
Q Consensus 468 ~ske~iedL~~~L~~~m 484 (783)
.++.+|++|++++....
T Consensus 320 ~l~~qi~~l~~~i~~e~ 336 (754)
T TIGR01005 320 AAKSSLADLDAQIRSEL 336 (754)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78888888877765443
No 97
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.03 E-value=11 Score=41.23 Aligned_cols=137 Identities=21% Similarity=0.231 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003961 381 LQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKM 460 (783)
Q Consensus 381 lq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~ 460 (783)
+..|.+-|+.+..|...+..|..+|+.-....|+.++ .+|.+--.++-....+|..|...|........
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEq-------qLv~dcv~QL~~An~qia~LseELa~k~Ee~~---- 230 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQ-------QLVLDCVKQLSEANQQIASLSEELARKTEENR---- 230 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHH-------HHHHHHHHHhhhcchhHHHHHHHHHHHHHHHH----
Confidence 5677888888888999999999999988776664333 12222222233344556666555554322111
Q ss_pred hchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhH
Q 003961 461 MNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQR 538 (783)
Q Consensus 461 ~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ 538 (783)
-...||..+-.+|-||.+++..++ +|..+|+.-|. +..++...|..||+-+++..+.....|.+|+..
T Consensus 231 rQQEEIt~LlsqivdlQ~r~k~~~-------~EnEeL~q~L~---~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEE 298 (306)
T PF04849_consen 231 RQQEEITSLLSQIVDLQQRCKQLA-------AENEELQQHLQ---ASKESQRQLQAELQELQDKYAECMAMLHEAQEE 298 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123445555555555544444433 23344554443 335555555555555555555444444444433
No 98
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.01 E-value=21 Score=44.26 Aligned_cols=65 Identities=22% Similarity=0.156 Sum_probs=34.7
Q ss_pred HHHHhhhhHHHHHHhhhHHH---HHHHhhh-hhhhhhHHhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHH
Q 003961 538 RAEVSRSEKEEILVKLSHSE---KMLAEGK-GRANKLEEDNAKLRLAVEQSMTRLNRMSVDSDFLVDRRIVI 605 (783)
Q Consensus 538 ~ie~~~kEKeei~~KLs~~E---~~l~e~K-~~~~KL~eDn~kLR~ALeqsl~RL~~ms~dsD~~VDRRIVt 605 (783)
..|..++..++-++.|...+ -.|.|-. ....-|++++.+++=|..+...|.+.-. ...+||..-+
T Consensus 459 nlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaq---et~yDrdqTI 527 (1243)
T KOG0971|consen 459 NLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQ---ETVYDRDQTI 527 (1243)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHhHHHHH
Confidence 34455566665555443333 3333333 2444477777777777766666666532 3456665443
No 99
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=93.97 E-value=25 Score=44.86 Aligned_cols=33 Identities=21% Similarity=0.171 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhc
Q 003961 312 VENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (783)
+..|.+.|..|+.+...+..++..|.+.+..+.
T Consensus 744 i~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~ 776 (1353)
T TIGR02680 744 IAELDARLAAVDDELAELARELRALGARQRALA 776 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777777777776665
No 100
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=93.75 E-value=13 Score=41.10 Aligned_cols=31 Identities=16% Similarity=0.231 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003961 377 MEQSLQKLEKDLKETCSERDKALQELTRLKQ 407 (783)
Q Consensus 377 me~slq~L~~eL~e~~~E~dKa~kEL~RLRq 407 (783)
.....+-|..++.+.+.+.+.+..+|...|+
T Consensus 159 ~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~ 189 (498)
T TIGR03007 159 SDSAQRFIDEQIKTYEKKLEAAENRLKAFKQ 189 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777788888888888764
No 101
>PLN02939 transferase, transferring glycosyl groups
Probab=93.69 E-value=24 Score=43.90 Aligned_cols=199 Identities=22% Similarity=0.221 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHHH
Q 003961 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKE 390 (783)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e 390 (783)
-++.|-.||.+.+|-.-.|...+-.-...|+... ..||.++..+..|+.-|.+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 181 (977)
T PLN02939 129 QLEDLVGMIQNAEKNILLLNQARLQALEDLEKIL---------------------------TEKEALQGKINILEMRLSE 181 (977)
T ss_pred cHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHH---------------------------HHHHHHHhhHHHHHHHhhh
Confidence 6777888888888776666655555445555444 2567777777777777777
Q ss_pred hHHHH----------HHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003961 391 TCSER----------DKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKM 460 (783)
Q Consensus 391 ~~~E~----------dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~ 460 (783)
+.+-. +=...+|..||+.|+.....+..-.--=+....-|+++|--++..|.-|..+|- +.+.-++.--
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 260 (977)
T PLN02939 182 TDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELI-EVAETEERVF 260 (977)
T ss_pred hhhhhhhhhhccccchhhHHHHHHHhhhhhccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHhhhHHHH
Confidence 52211 112345677777766554321100001123345566677666666655443332 1222222222
Q ss_pred hchHHHHhhHHHHHhhhhhHHHhHH---HHHh-----hhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 003961 461 MNHSEIQKSKEIIDGLNNKLANCMR---TIEA-----KNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYL 532 (783)
Q Consensus 461 ~n~~E~~~ske~iedL~~~L~~~me---aleA-----KnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~L 532 (783)
+-+-|...+..-+.+|..+++..-+ .+.. -=..+.|||.-|+.-..-.|.+.-.-..-.-++.++.+|.++|
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (977)
T PLN02939 261 KLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASL 340 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 2244666666777777777765322 1111 1224589999999987777766555555556677888899888
Q ss_pred HHhhh
Q 003961 533 KNADQ 537 (783)
Q Consensus 533 k~a~q 537 (783)
++|.-
T Consensus 341 ~~~~~ 345 (977)
T PLN02939 341 KEANV 345 (977)
T ss_pred HHhhH
Confidence 88764
No 102
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=93.66 E-value=21 Score=43.02 Aligned_cols=81 Identities=19% Similarity=0.211 Sum_probs=40.0
Q ss_pred HHHhhhchHHHH----hhHHHHHhhhhhHHHhHHH----------------HHhhhhhHhhHHHHHHHHH---HHHHHhh
Q 003961 456 EEFKMMNHSEIQ----KSKEIIDGLNNKLANCMRT----------------IEAKNVELLNLQTALGQYF---AEIEAKG 512 (783)
Q Consensus 456 eelk~~n~~E~~----~ske~iedL~~~L~~~mea----------------leAKnvEl~NLQtALgqfq---AE~EA~E 512 (783)
+.++.+-...+. +++.+++.+-|++..+... |+....++.=||.-.+.|- +|.+..
T Consensus 381 e~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~- 459 (698)
T KOG0978|consen 381 EMLKSLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETI- 459 (698)
T ss_pred HHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 444444444444 6677777777766654332 2233333333444333333 333332
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHH
Q 003961 513 HLERELALAREESAKLSEYLKNADQRA 539 (783)
Q Consensus 513 rLe~ELa~aree~a~Ls~~Lk~a~q~i 539 (783)
.+.....++.+.+|.+.|..+++.-
T Consensus 460 --gsA~ed~Qeqn~kL~~el~ekdd~n 484 (698)
T KOG0978|consen 460 --GSAFEDMQEQNQKLLQELREKDDKN 484 (698)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3333335555666666666666654
No 103
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=93.52 E-value=21 Score=42.69 Aligned_cols=170 Identities=22% Similarity=0.268 Sum_probs=111.6
Q ss_pred HHHHHHHhhhhhhhHHHhHHHHHhhch-------HHHHHHhhcccCcccchhHHHHHHHHHhhhHHHHHHHH-------H
Q 003961 233 LRMELEQQRNKFADVQLKLQEEQRLNE-------SFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQ-------M 298 (783)
Q Consensus 233 l~~el~~~~~k~~~~~~~lqee~k~n~-------~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq-------~ 298 (783)
|..++..-+.+++++=..|-+...+-. ++.++|..| .+.++.|+...++++.|++.++ .
T Consensus 66 L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l-------~~~le~lr~qk~eR~~ef~el~~qie~l~~ 138 (660)
T KOG4302|consen 66 LLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESL-------KPYLEGLRKQKDERRAEFKELYHQIEKLCE 138 (660)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555544333322 666666654 5678888888888888777665 4
Q ss_pred Hhccc---------ccCCcc-hHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCC
Q 003961 299 ELNRR---------EDGDAN-DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSS 368 (783)
Q Consensus 299 ~l~~~---------e~e~~~-~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~ 368 (783)
+|.|. +..+.+ .-++.|+..|..|++|...=.....++...|..+-..+|-.....++++-....+.+.-
T Consensus 139 ~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~ 218 (660)
T KOG4302|consen 139 ELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGE 218 (660)
T ss_pred HhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCc
Confidence 56666 122233 36899999999999999999999999999999999999988886666554444333322
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 003961 369 ESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEK 412 (783)
Q Consensus 369 ~sf~~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~ 412 (783)
.+++-..+.-..|+.+.+.|++.+.++-.. |+-|+-.+++.
T Consensus 219 ~~~~is~etl~~L~~~v~~l~~~k~qr~~k---l~~l~~~~~~L 259 (660)
T KOG4302|consen 219 QSRSISDETLDRLDKMVKKLKEEKKQRLQK---LQDLRTKLLEL 259 (660)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 234555565556777777777776655444 55556555554
No 104
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=93.28 E-value=24 Score=42.61 Aligned_cols=91 Identities=19% Similarity=0.194 Sum_probs=58.6
Q ss_pred hhhHhhHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhh
Q 003961 491 NVELLNLQTALGQYFAEI-EAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANK 569 (783)
Q Consensus 491 nvEl~NLQtALgqfqAE~-EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~K 569 (783)
..||..|-..+..++.-. +++.+++.++..+.+.+..+.+..+....++....+|.-....-....+..++-++..++.
T Consensus 372 k~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvt 451 (717)
T PF09730_consen 372 KAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVT 451 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 445555555555555433 4556778888888888887777666665566555555433333344566677777778888
Q ss_pred hHHhHHHHHHHH
Q 003961 570 LEEDNAKLRLAV 581 (783)
Q Consensus 570 L~eDn~kLR~AL 581 (783)
+-++.+.|=.|+
T Consensus 452 fSEeLAqLYHHV 463 (717)
T PF09730_consen 452 FSEELAQLYHHV 463 (717)
T ss_pred HHHHHHHHHHHH
Confidence 888888777766
No 105
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.26 E-value=14 Score=39.77 Aligned_cols=41 Identities=29% Similarity=0.488 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHh
Q 003961 522 REESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAE 562 (783)
Q Consensus 522 ree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e 562 (783)
+.++..|...|...+..++....+|.++...+..++++..+
T Consensus 229 k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~ 269 (325)
T PF08317_consen 229 KKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREE 269 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444443
No 106
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.19 E-value=2.4 Score=46.39 Aligned_cols=134 Identities=19% Similarity=0.250 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcC------C---CCCCCCCCCChhHHHHH
Q 003961 310 DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRL------D---GMVSSESFPGKEEMEQS 380 (783)
Q Consensus 310 ~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~------~---d~~~~~sf~~kEeme~s 380 (783)
..+...+..+..|..|...|+..+.|+..++.-+|.+..+.-..+ .....++ . +.++.+ -+.+.++..
T Consensus 72 ~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~-~~~~~~~~~~ere~lV~qLEk~~--~q~~qLe~d 148 (319)
T PF09789_consen 72 QLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGD-EGIGARHFPHEREDLVEQLEKLR--EQIEQLERD 148 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhh-ccccccccchHHHHHHHHHHHHH--HHHHHHHHH
Confidence 345556666666777777777777777777666665544321111 1111122 1 222222 244555666
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003961 381 LQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQ 450 (783)
Q Consensus 381 lq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~ 450 (783)
++.+-.|..|...|||--.-=.+||=+-|-..=..+.-+.- | ||-|-.||-|+..+|.+++.+..-
T Consensus 149 ~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~riv-D---IDaLi~ENRyL~erl~q~qeE~~l 214 (319)
T PF09789_consen 149 LQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIV-D---IDALIMENRYLKERLKQLQEEKEL 214 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc-c---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666677777766666666664443222211111111 2 667777899999999987765443
No 107
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=93.19 E-value=27 Score=42.95 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=14.9
Q ss_pred HHHHHhcCCCHHHHHHhhhcccC
Q 003961 622 DLMVRMLGFSDEDKQRIGMAQQG 644 (783)
Q Consensus 622 ~LMArMLgFSDEEK~riGL~~q~ 644 (783)
-+||+|+.= =+++-++|+.-+.
T Consensus 579 kgma~a~~k-Iee~kr~w~nsre 600 (1265)
T KOG0976|consen 579 KGMARAHHK-IEERKRVWLNSRE 600 (1265)
T ss_pred HHHHHHHhh-hHHHHhhhhhhHH
Confidence 588888864 3556677776663
No 108
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.14 E-value=14 Score=40.61 Aligned_cols=93 Identities=28% Similarity=0.312 Sum_probs=55.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh--------------hh-----hhhhhhhHHHHHHHHhHHHHHHHHHH
Q 003961 383 KLEKDLKETCSERDKALQELTRLKQHLIEKAQE--------------ES-----EKMDEDSKIIEELRENNEYQRAQILH 443 (783)
Q Consensus 383 ~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~E--------------e~-----ekmded~k~IeELreenE~~R~~Is~ 443 (783)
+|..-|.+++.+.-++.-|+.-|||.|-+...+ .. ...++.+..|. .+|..+.++.+
T Consensus 69 ~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~----qLEk~~~q~~q 144 (319)
T PF09789_consen 69 NLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVE----QLEKLREQIEQ 144 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHH----HHHHHHHHHHH
Confidence 344445555555666666666666665443321 10 11133333333 46788889999
Q ss_pred HHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHh
Q 003961 444 LENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANC 483 (783)
Q Consensus 444 lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~ 483 (783)
||+.++--.-..+|+ ..|....+..+.+|++.|.-.
T Consensus 145 Le~d~qs~lDEkeEl----~~ERD~yk~K~~RLN~ELn~~ 180 (319)
T PF09789_consen 145 LERDLQSLLDEKEEL----VTERDAYKCKAHRLNHELNYI 180 (319)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 999888765544443 356777788888888877553
No 109
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=93.14 E-value=12 Score=38.79 Aligned_cols=150 Identities=21% Similarity=0.280 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHH----HH
Q 003961 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKL----EK 386 (783)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L----~~ 386 (783)
.+..++..+...+.++..|...+.+|......|++. -++.+..++.+ .+
T Consensus 10 ~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i---------------------------~~e~Ek~i~~~i~e~~~ 62 (207)
T PF05010_consen 10 AIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKI---------------------------MEEYEKTIAQMIEEKQK 62 (207)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHH---------------------------HHHHHHHHHHHHHHHHh
Confidence 566666666666666777777777777777777732 12333333322 22
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhhhh---hhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 003961 387 DLKETCSERDKALQELTRLKQHLIEKAQEE---SEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNH 463 (783)
Q Consensus 387 eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee---~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~ 463 (783)
.-.....+..+..+|.+.+..||-.++.-= --+.+.--.+|+.++..-+.++.||.++...+++.-.+.+-||.-..
T Consensus 63 ~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAe 142 (207)
T PF05010_consen 63 QKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAE 142 (207)
T ss_pred hHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445567777777777888876665411 13444444567777776677777777777777765444444544445
Q ss_pred HHHHhhHHHHHhhhhhHHHhHHHH
Q 003961 464 SEIQKSKEIIDGLNNKLANCMRTI 487 (783)
Q Consensus 464 ~E~~~ske~iedL~~~L~~~meal 487 (783)
..+...|++|..+..+..+.+.++
T Consensus 143 ekL~~ANeei~~v~~~~~~e~~aL 166 (207)
T PF05010_consen 143 EKLEKANEEIAQVRSKHQAELLAL 166 (207)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 555555666665555544444333
No 110
>PRK11281 hypothetical protein; Provisional
Probab=92.97 E-value=33 Score=43.30 Aligned_cols=70 Identities=19% Similarity=0.265 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhhH----HHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHH
Q 003961 310 DVVENLKRVVATLEKENNSLKMEK----TELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLE 385 (783)
Q Consensus 310 ~~~~sLk~~~~~L~kEn~tlk~~~----~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~ 385 (783)
++-+.++..++.+.+- .....+. ..|+..|.-.. +.+...+.++.|+
T Consensus 36 p~~~~iq~~l~~~~~~-~~~~~~~k~~~~~l~~tL~~L~----------------------------qi~~~~~~~~~L~ 86 (1113)
T PRK11281 36 PTEADVQAQLDALNKQ-KLLEAEDKLVQQDLEQTLALLD----------------------------KIDRQKEETEQLK 86 (1113)
T ss_pred CCHHHHHHHHHHhhcC-CCCchhhHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHH
Confidence 4566777888887663 3334333 33444444443 2234444567888
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Q 003961 386 KDLKETCSERDKALQELTRLKQH 408 (783)
Q Consensus 386 ~eL~e~~~E~dKa~kEL~RLRqH 408 (783)
+.+..+-.+...+.++|.+|++.
T Consensus 87 k~l~~Ap~~l~~a~~~Le~Lk~~ 109 (1113)
T PRK11281 87 QQLAQAPAKLRQAQAELEALKDD 109 (1113)
T ss_pred HHHHHhHHHHHHHHHHHHHhhcc
Confidence 88888888899999999999874
No 111
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=92.97 E-value=11 Score=39.88 Aligned_cols=25 Identities=36% Similarity=0.299 Sum_probs=16.4
Q ss_pred HHHhhhchHHHHhhHHHHHhhhhhH
Q 003961 456 EEFKMMNHSEIQKSKEIIDGLNNKL 480 (783)
Q Consensus 456 eelk~~n~~E~~~ske~iedL~~~L 480 (783)
+........+++++++.+.+...++
T Consensus 58 e~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 58 ENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445677888888777776666
No 112
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.95 E-value=8 Score=41.54 Aligned_cols=38 Identities=18% Similarity=0.342 Sum_probs=27.8
Q ss_pred HhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHH
Q 003961 225 AYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDE 264 (783)
Q Consensus 225 ~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~ 264 (783)
-+++-+++|+.-+++-|.-+.++.-..-.++-. .|+|=
T Consensus 72 ly~~~c~EL~~~I~egr~~~~~~E~~~~~~nPp--Lf~EY 109 (325)
T PF08317_consen 72 LYQFSCRELKKYISEGRQIFEEIEEETYESNPP--LFREY 109 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH--HHHHH
Confidence 356778888888888888888887777665533 66664
No 113
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.82 E-value=26 Score=41.65 Aligned_cols=70 Identities=40% Similarity=0.700 Sum_probs=56.3
Q ss_pred ChhHHHHHHHHHHH-----hhhHHhHhHhhhhHH-HHhhhhHH---HhhhhhccccchhhhhhhhHHHHHhhhcCCCccC
Q 003961 70 DPEIERYKAEIKRL-----QESEAEIKALSVNYA-ALLKEKEE---QISRLNGEYGLLKQNLDATNAALNAFRNGNSKAS 140 (783)
Q Consensus 70 ~~eie~ykaei~~l-----q~seaeikals~nya-allkeked---qi~rl~~engslk~nl~~t~~al~~~r~~~~~~s 140 (783)
..+++.|+.+|.|| |.+++-|+| -||. ++|.||++ |...|.-++.++++-||-|+.||-.+|+-|.++-
T Consensus 7 eq~ve~lr~eierLT~el~q~t~e~~qa--AeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~ 84 (772)
T KOG0999|consen 7 EQEVEKLRQEIERLTEELEQTTEEKIQA--AEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVA 84 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46789999999998 566666665 5675 68899876 6777888999999999999999998887655543
Q ss_pred C
Q 003961 141 S 141 (783)
Q Consensus 141 ~ 141 (783)
.
T Consensus 85 ~ 85 (772)
T KOG0999|consen 85 R 85 (772)
T ss_pred c
Confidence 3
No 114
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=92.75 E-value=16 Score=44.32 Aligned_cols=167 Identities=23% Similarity=0.261 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HH-Hhhhch-----
Q 003961 394 ERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQ----EE-FKMMNH----- 463 (783)
Q Consensus 394 E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~q----ee-lk~~n~----- 463 (783)
=-+|+..|..-||++|=+- .+.+-....+|+||+-|||.-|-.. ++ -..+.+
T Consensus 18 gwekae~e~~~lk~~l~~~------------------~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~ 79 (769)
T PF05911_consen 18 GWEKAEAEAASLKQQLEAA------------------TQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKK 79 (769)
T ss_pred hHHHHHHHHHHHHHHHHHH------------------HHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3578999999999985222 2223344566788888888755421 11 111111
Q ss_pred -HHHH----hhHHHHHhhhhhHHHh-------HHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 003961 464 -SEIQ----KSKEIIDGLNNKLANC-------MRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEY 531 (783)
Q Consensus 464 -~E~~----~ske~iedL~~~L~~~-------mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~ 531 (783)
.|.. .+...+.+++++|+.. ..+|..|..-|.-|.....+--+++ ..|...|..+..+++.|--.
T Consensus 80 s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~---~~l~~~l~~~eken~~Lkye 156 (769)
T PF05911_consen 80 SKEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEI---EDLMARLESTEKENSSLKYE 156 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHH
Confidence 1222 2334444444444321 1122222222333333332222222 23455566666666665555
Q ss_pred HHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHH
Q 003961 532 LKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAV 581 (783)
Q Consensus 532 Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~AL 581 (783)
|-.-.-.++.+..|++.-......+-++..+.=..+.||+.++-+||--+
T Consensus 157 ~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~ 206 (769)
T PF05911_consen 157 LHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALV 206 (769)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555666666665444333344444444456777888888877543
No 115
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=92.45 E-value=35 Score=42.28 Aligned_cols=75 Identities=15% Similarity=0.205 Sum_probs=50.8
Q ss_pred HhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCcccchhHHHHHHHHHhhhHHHHHHHHHHhcccc
Q 003961 225 AYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRRE 304 (783)
Q Consensus 225 ~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e 304 (783)
.|.-++-.||.||+....-+.... +.....++++|+..--.-.+...+++.|+.+..+-+-..-|.+++-+
T Consensus 327 ~~~~~~~~lK~ql~~l~~ell~~~---------~~~~~~ei~sl~~e~~~l~~~~d~~~~e~~e~~s~~s~~~~~~~~~~ 397 (913)
T KOG0244|consen 327 PKSFEMLKLKAQLEPLQVELLSKA---------GDELDAEINSLPFENVTLEETLDALLQEKGEERSTLSSKSLKLTGAE 397 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc---------cccchhHHhhhhhhhhhhhhhHHHHhcchhhhhhhhhHHHHhcchhh
Confidence 344455555555554443332221 34466888888877777778888999999999999888888888866
Q ss_pred cCCc
Q 003961 305 DGDA 308 (783)
Q Consensus 305 ~e~~ 308 (783)
.+.+
T Consensus 398 ~~k~ 401 (913)
T KOG0244|consen 398 KEKD 401 (913)
T ss_pred hhHH
Confidence 5543
No 116
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.40 E-value=29 Score=41.24 Aligned_cols=187 Identities=23% Similarity=0.307 Sum_probs=107.6
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhhH-HHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHH
Q 003961 310 DVVENLKRVVATLEKENNSLKMEK-TELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDL 388 (783)
Q Consensus 310 ~~~~sLk~~~~~L~kEn~tlk~~~-~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL 388 (783)
-.|+.|+..|+.|-+|...-+..+ ..-+.-|.-++ .|+++.+.++.|+.++
T Consensus 8 q~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLe----------------------------eK~~Lkqq~eEleaey 59 (772)
T KOG0999|consen 8 QEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLE----------------------------EKEDLKQQLEELEAEY 59 (772)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHH
Confidence 367788888888877765544332 23333344444 5667777777666666
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh--------
Q 003961 389 KETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKM-------- 460 (783)
Q Consensus 389 ~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~-------- 460 (783)
.-+++|.|+...=|..-+-. .+-.-. +-.+++..+|.|-...-+|.-.+|..||..||+......+.+.
T Consensus 60 d~~R~Eldqtkeal~q~~s~--hkk~~~-~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~ 136 (772)
T KOG0999|consen 60 DLARTELDQTKEALGQYRSQ--HKKVAR-DGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKV 136 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHhhc-cchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666555555544321 111111 1123334556665555566667799999999986544322111
Q ss_pred ---------hchHHHHhhHHHHHhhhhh---HHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 003961 461 ---------MNHSEIQKSKEIIDGLNNK---LANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKL 528 (783)
Q Consensus 461 ---------~n~~E~~~ske~iedL~~~---L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~L 528 (783)
+-+.+..+++.+|.++|-+ |...-..++--|.-|.-.=+.|-+-|-|-|. |.-|+.++-+++.=|
T Consensus 137 ~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEg---lkheikRleEe~ell 213 (772)
T KOG0999|consen 137 HSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEG---LKHEIKRLEEETELL 213 (772)
T ss_pred HHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhH---HHHHHHHHHHHHHHH
Confidence 1123556677777776643 4444456666677777777788888888765 345555555555444
Q ss_pred HH
Q 003961 529 SE 530 (783)
Q Consensus 529 s~ 530 (783)
..
T Consensus 214 n~ 215 (772)
T KOG0999|consen 214 NS 215 (772)
T ss_pred HH
Confidence 33
No 117
>PRK11281 hypothetical protein; Provisional
Probab=92.27 E-value=40 Score=42.59 Aligned_cols=79 Identities=14% Similarity=0.164 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHHHhHH
Q 003961 314 NLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKETCS 393 (783)
Q Consensus 314 sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e~~~ 393 (783)
..+..++.|++.-.++..+.++..+.|+..++....... ....+. +. .++|+.+..+..+|.+.+.
T Consensus 77 ~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~----------~~~~~~---Sl-~qLEq~L~q~~~~Lq~~Q~ 142 (1113)
T PRK11281 77 RQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETR----------ETLSTL---SL-RQLESRLAQTLDQLQNAQN 142 (1113)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcccccccc----------cccccc---CH-HHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666777777777776632111100 011111 12 3466666666666666655
Q ss_pred HHHHHHHHHHHHH
Q 003961 394 ERDKALQELTRLK 406 (783)
Q Consensus 394 E~dKa~kEL~RLR 406 (783)
.....+..|..+.
T Consensus 143 ~La~~NsqLi~~q 155 (1113)
T PRK11281 143 DLAEYNSQLVSLQ 155 (1113)
T ss_pred HHHHHHHHHHhhh
Confidence 5555555444433
No 118
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=92.24 E-value=28 Score=40.66 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=8.5
Q ss_pred CCHHHHHHhhhccc
Q 003961 630 FSDEDKQRIGMAQQ 643 (783)
Q Consensus 630 FSDEEK~riGL~~q 643 (783)
+|.-||+-+.|+-.
T Consensus 552 lS~Ge~~~~~la~~ 565 (650)
T TIGR03185 552 LSAGERQILAIALL 565 (650)
T ss_pred CCHHHHHHHHHHHH
Confidence 46666666655554
No 119
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=92.19 E-value=18 Score=38.34 Aligned_cols=31 Identities=13% Similarity=0.222 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHHHHhc
Q 003961 314 NLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 314 sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (783)
.+......+..+...|..++..+++.+...+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 157 (423)
T TIGR01843 127 LIKGQQSLFESRKSTLRAQLELILAQIKQLE 157 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555556666666666665555554
No 120
>PLN02939 transferase, transferring glycosyl groups
Probab=92.14 E-value=36 Score=42.57 Aligned_cols=293 Identities=23% Similarity=0.245 Sum_probs=154.2
Q ss_pred hHHHHHHhhcccCcccc------hhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhh
Q 003961 259 ESFQDELKSLKMDKDKT------SIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKME 332 (783)
Q Consensus 259 ~~fqe~l~~lk~~~~kt------s~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~ 332 (783)
+-+|.+++.|.|.-..| +.+ .++|-||.+.. +..|..+|.-+. .+.+-.+.+|-..+..|++||-.||.-
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (977)
T PLN02939 166 EALQGKINILEMRLSETDARIKLAAQ-EKIHVEILEEQ--LEKLRNELLIRG-ATEGLCVHSLSKELDVLKEENMLLKDD 241 (977)
T ss_pred HHHHhhHHHHHHHhhhhhhhhhhhhh-ccccchhhHHH--HHHHhhhhhccc-cccccccccHHHHHHHHHHHhHHHHHH
Confidence 56788999998865554 222 45666666543 334555555432 333447888999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHH-------HHHHHH
Q 003961 333 KTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKAL-------QELTRL 405 (783)
Q Consensus 333 ~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e~~~E~dKa~-------kEL~RL 405 (783)
+.-|.++|.....+ +.+....++ .-.-|+.++..|+..+..++...-|+. =|-.-=
T Consensus 242 ~~~~~~~~~~~~~~------------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (977)
T PLN02939 242 IQFLKAELIEVAET------------EERVFKLEK-----ERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVEN 304 (977)
T ss_pred HHHHHHHHHHHHhh------------hHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHH
Confidence 99999888877633 111111112 122355666666666666654433211 111111
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHH
Q 003961 406 KQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMR 485 (783)
Q Consensus 406 RqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~me 485 (783)
=|+||+.-....+++ +--| +.+...+.+|..||..|+.+.... + ...-+..+.+.+..|..+|.+|.+
T Consensus 305 ~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~ 372 (977)
T PLN02939 305 LQDLLDRATNQVEKA------ALVL-DQNQDLRDKVDKLEASLKEANVSK--F---SSYKVELLQQKLKLLEERLQASDH 372 (977)
T ss_pred HHHHHHHHHHHHHHH------HHHh-ccchHHHHHHHHHHHHHHHhhHhh--h---hHHHHHHHHHHHHHHHHHHHhhHH
Confidence 245555443221111 1111 246667888899998888764421 1 122334455666666666666654
Q ss_pred HHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHH-HHHHhhhHHHHHHHhhh
Q 003961 486 TIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKE-EILVKLSHSEKMLAEGK 564 (783)
Q Consensus 486 aleAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKe-ei~~KLs~~E~~l~e~K 564 (783)
.| ++-+.-|+++++. +..-|-.+.++..+-+ .+.-+...-.|-- +++.. +..+.-+.+
T Consensus 373 ~~----------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lll~---id~~~~~~~ 431 (977)
T PLN02939 373 EI----------HSYIQLYQESIKE---FQDTLSKLKEESKKRS-----LEHPADDMPSEFWSRILLL---IDGWLLEKK 431 (977)
T ss_pred HH----------HHHHHHHHHHHHH---HHHHHHHHHhhhhccc-----ccCchhhCCHHHHHHHHHH---HHHHHHhcc
Confidence 33 3455667666643 1111111111111100 0000011011100 01111 112211110
Q ss_pred hhhhhhHHhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHH
Q 003961 565 GRANKLEEDNAKLRLAVEQSMTRLNRMSVDSDFLVDRRIVIKLLV 609 (783)
Q Consensus 565 ~~~~KL~eDn~kLR~ALeqsl~RL~~ms~dsD~~VDRRIVtkLLL 609 (783)
- -.+|+..||+.+-..-.++.++-++.-..=|+.||..++-
T Consensus 432 ~----~~~~a~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (977)
T PLN02939 432 I----SNNDAKLLREMVWKRDGRIREAYLSCKGKNEREAVENFLK 472 (977)
T ss_pred C----ChhhHHHHHHHHHhhhhhHHHHHHHHhcCchHHHHHHHHH
Confidence 0 1278888888887777777777766667778999998873
No 121
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=92.11 E-value=34 Score=41.36 Aligned_cols=45 Identities=31% Similarity=0.270 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHhhhhhhhhh
Q 003961 377 MEQSLQKLEKDLKETCSERD-KALQELTRLKQHLIEKAQEESEKMD 421 (783)
Q Consensus 377 me~slq~L~~eL~e~~~E~d-Ka~kEL~RLRqHLLe~E~Ee~ekmd 421 (783)
|+.-++.++.-+++..-+.+ |+..|+.-|+||++++..++-.++.
T Consensus 376 ~~~~le~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~ 421 (698)
T KOG0978|consen 376 NELRLEMLKSLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIR 421 (698)
T ss_pred HHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566777777788866666 9999999999999999876654443
No 122
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=92.08 E-value=28 Score=40.32 Aligned_cols=107 Identities=25% Similarity=0.248 Sum_probs=57.5
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHhh-hhhhhHHHh---HHHHHhhc----------hHHHHHHhhcccCcccchhHHHHH
Q 003961 217 RSLAAERAAYESQTRQLRMELEQQR-NKFADVQLK---LQEEQRLN----------ESFQDELKSLKMDKDKTSIEITEM 282 (783)
Q Consensus 217 ~~~aa~qa~~~~~i~~l~~el~~~~-~k~~~~~~~---lqee~k~n----------~~fqe~l~~lk~~~~kts~~~~~~ 282 (783)
-.+.+.||+ +|.||..=++|+. ++.-|..+- -.-...+. ++.-+|+-+| ++.+|.-.+...=
T Consensus 118 Ee~C~eQAa---kIeQLNrLVqQyK~ErE~naiI~Q~re~k~~rleslmdg~l~~~e~~~ee~~sl-~~e~KlLk~~~en 193 (488)
T PF06548_consen 118 EEVCAEQAA---KIEQLNRLVQQYKHERECNAIIAQTREDKILRLESLMDGVLPTEEFIDEEYVSL-MHEHKLLKEKYEN 193 (488)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHcccchhhHHHHHhhhhHHHHHHHhhccccchHHHhhhHhhhh-hhHhhhhhhhccC
Confidence 357789998 6777766555543 222232221 11111121 2344555554 3455555555444
Q ss_pred HHHHhhhHHHHHHHHHHhcccccCCcc-hHHHHHHHHHHHHHHhhh
Q 003961 283 RKELNGKLSELRRLQMELNRREDGDAN-DVVENLKRVVATLEKENN 327 (783)
Q Consensus 283 ~~el~ek~sei~rlq~~l~~~e~e~~~-~~~~sLk~~~~~L~kEn~ 327 (783)
|=|.-.-.=||+++|.||....+-..+ +--+-|-.+|..|+.+..
T Consensus 194 ~pevl~~~~E~k~~qeel~~~~~~~~d~~EkE~Ll~EIq~Lk~qL~ 239 (488)
T PF06548_consen 194 HPEVLKEKIELKRVQEELEEYRNFSFDMGEKEVLLEEIQDLKSQLQ 239 (488)
T ss_pred chHHHhhHhHHHHHHHHHHhccccccCcchHHHHHHHHHHHHHHHH
Confidence 445555566899999999855544333 345556666666655544
No 123
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=91.87 E-value=0.35 Score=39.39 Aligned_cols=40 Identities=18% Similarity=0.388 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHHhcCCc--hHHHHHHHHhcCCCHHHHHHh
Q 003961 599 VDRRIVIKLLVTYFQRNHS--KEVLDLMVRMLGFSDEDKQRI 638 (783)
Q Consensus 599 VDRRIVtkLLLTYf~R~~s--KEVL~LMArMLgFSDEEK~ri 638 (783)
+|-.-+.|+++.||+...+ ..++-.|+++|.||++|.+++
T Consensus 2 ~n~eYLKNVll~fl~~~e~~r~~ll~vi~tlL~fs~~e~~~~ 43 (46)
T smart00755 2 ANFEYLKNVLLQFLTLRESERETLLKVISTVLQLSPEEMQKL 43 (46)
T ss_pred ccHHHHHHHHHHHhccCcchHHHHHHHHHHHhCCCHHHHHHH
Confidence 3445678999999995555 589999999999999999876
No 124
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=91.86 E-value=36 Score=41.19 Aligned_cols=313 Identities=21% Similarity=0.218 Sum_probs=152.5
Q ss_pred hhHHHhHHHHHhhchHHHHHHhhcccCcccchhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHH
Q 003961 245 ADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEK 324 (783)
Q Consensus 245 ~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~k 324 (783)
.+++--|.-|+.+-+-...+|+.|.|+-.+-|.++.+|-+--+-|--+|.-|...|..... --+-..++....+.|+.
T Consensus 359 ~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmtk~k~~ke~eleeL~~~L~e~qk--ll~ekk~~eki~E~lq~ 436 (786)
T PF05483_consen 359 CNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELEEMTKQKNNKEVELEELKKILAEKQK--LLDEKKQFEKIAEELQG 436 (786)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 3445567778888888899999999999999999999988888888888888888876542 11111222222222221
Q ss_pred h-------hhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHHHhHHHHHH
Q 003961 325 E-------NNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKETCSERDK 397 (783)
Q Consensus 325 E-------n~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e~~~E~dK 397 (783)
- ..+...+...|+..|+..-.+ .-..+.-..++ ..+.--++. .+.++-.....|.-+-+..+.+...
T Consensus 437 ~eqel~~llq~~ekev~dLe~~l~~~~~~-eq~yskQVeeL-KtELE~EkL----KN~ELt~~~nkLslEkk~laQE~~~ 510 (786)
T PF05483_consen 437 TEQELTGLLQIREKEVHDLEIQLTTIKES-EQHYSKQVEEL-KTELEQEKL----KNTELTVNCNKLSLEKKQLAQETSD 510 (786)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHh-hHHHHHHHHHH-HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 122222233333333332210 00000000000 000000111 2344445555666666666777777
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhchHHHHhhH
Q 003961 398 ALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQ-------EEFKMMNHSEIQKSK 470 (783)
Q Consensus 398 a~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~q-------eelk~~n~~E~~~sk 470 (783)
..-||..+.-.+-... .-.++| -+.|+.|.+++-..|..+..+-..|++....- ++..-..+.|+.+..
T Consensus 511 ~~~elKk~qedi~~~k-~qee~~---~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~ 586 (786)
T PF05483_consen 511 MALELKKQQEDINNSK-KQEEKM---LKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKE 586 (786)
T ss_pred hhhhHHHHHHHHHHHH-HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhH
Confidence 7777776533322221 112333 33466676666666666655555555432211 111111112222222
Q ss_pred HHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHH
Q 003961 471 EIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEIL 550 (783)
Q Consensus 471 e~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~ 550 (783)
.+|--|.+++.+ ++ .++.|-...++.+|-+- -++...+++-+..+..+.-.|.....|-+-+-
T Consensus 587 kq~k~lenk~~~----Lr---KqvEnk~K~ieeLqqeN----------k~LKKk~~aE~kq~~~~eikVn~L~~E~e~~k 649 (786)
T PF05483_consen 587 KQMKILENKCNN----LR---KQVENKNKNIEELQQEN----------KALKKKITAESKQSNVYEIKVNKLQEELENLK 649 (786)
T ss_pred HHHHHHHHHHHH----HH---HHHHHHHhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222211111 11 12334444444444444 34666666666556666555554443332222
Q ss_pred Hhh----hHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHH
Q 003961 551 VKL----SHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMT 586 (783)
Q Consensus 551 ~KL----s~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~ 586 (783)
.+. .-..+.+.+.+-....|..++.++|..-++|+.
T Consensus 650 k~~eE~~~~~~keie~K~~~e~~L~~EveK~k~~a~EAvK 689 (786)
T PF05483_consen 650 KKHEEETDKYQKEIESKSISEEELLGEVEKAKLTADEAVK 689 (786)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 211 113333444444566788888888888888876
No 125
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=91.53 E-value=36 Score=41.69 Aligned_cols=82 Identities=23% Similarity=0.150 Sum_probs=54.1
Q ss_pred hhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHH
Q 003961 420 MDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQT 499 (783)
Q Consensus 420 mded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQt 499 (783)
-++=.|+|+-++++|..++.-+.+-+..|++..... +-|+.+.|-+++..-.++..+=--+++.+.|..=|-.
T Consensus 457 neellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~-------d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~i 529 (861)
T PF15254_consen 457 NEELLKVIENQKEENKRLRKMFQEKDQELLENKQQF-------DIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGI 529 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhh
Confidence 344578899999999999999999899888765433 3456666665555544444443345555556666666
Q ss_pred HHHHHHHHH
Q 003961 500 ALGQYFAEI 508 (783)
Q Consensus 500 ALgqfqAE~ 508 (783)
.|.|--||+
T Consensus 530 tlrQrDaEi 538 (861)
T PF15254_consen 530 TLRQRDAEI 538 (861)
T ss_pred HHHHHHHHH
Confidence 666665555
No 126
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=91.43 E-value=36 Score=40.27 Aligned_cols=38 Identities=32% Similarity=0.372 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 003961 376 EMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKA 413 (783)
Q Consensus 376 eme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E 413 (783)
+-++.++.|+..|.++..+.+.+..++++|+..+-.+.
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~ 362 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLE 362 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778888888888888888888888887755443
No 127
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=91.38 E-value=27 Score=38.79 Aligned_cols=134 Identities=15% Similarity=0.164 Sum_probs=76.9
Q ss_pred HHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHHHhHHHHHH
Q 003961 318 VVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKETCSERDK 397 (783)
Q Consensus 318 ~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e~~~E~dK 397 (783)
.++-|+++...++.+..+.+.+|...|...+. +.++ +.......+..+...+...+.++..
T Consensus 162 ~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~-~~~~------------------~~~~~~~~l~~l~~~l~~~~~~l~~ 222 (498)
T TIGR03007 162 AQRFIDEQIKTYEKKLEAAENRLKAFKQENGG-ILPD------------------QEGDYYSEISEAQEELEAARLELNE 222 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-cCcc------------------chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666667777788888877744221 1111 1123445677888888888888888
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhh
Q 003961 398 ALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLN 477 (783)
Q Consensus 398 a~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~ 477 (783)
+..-+..|++.+-.....-. -..+.. ...++.++.+++..+......-- -+.-.+..++.+|+.|+
T Consensus 223 ~~a~~~~l~~~l~~~~~~~~---~~~~~~-------~~~l~~~l~~l~~~l~~l~~~y~----~~hP~v~~l~~qi~~l~ 288 (498)
T TIGR03007 223 AIAQRDALKRQLGGEEPVLL---AGSSVA-------NSELDGRIEALEKQLDALRLRYT----DKHPDVIATKREIAQLE 288 (498)
T ss_pred HHHHHHHHHHHhccCCCCcC---cccccC-------CCchHHHHHHHHHHHHHHHHHhc----ccChHHHHHHHHHHHHH
Confidence 88888888886543221100 000111 12234556666666654433221 12346677788888888
Q ss_pred hhHHHhH
Q 003961 478 NKLANCM 484 (783)
Q Consensus 478 ~~L~~~m 484 (783)
+.+....
T Consensus 289 ~~l~~~~ 295 (498)
T TIGR03007 289 EQKEEEG 295 (498)
T ss_pred HHHHhhc
Confidence 8776543
No 128
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=91.17 E-value=34 Score=39.60 Aligned_cols=79 Identities=23% Similarity=0.339 Sum_probs=46.9
Q ss_pred hhHHHHHhhhhhHHHhHHHHHhhhhhHhhH----HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhh
Q 003961 468 KSKEIIDGLNNKLANCMRTIEAKNVELLNL----QTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSR 543 (783)
Q Consensus 468 ~ske~iedL~~~L~~~mealeAKnvEl~NL----QtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~ 543 (783)
..++.+..++.+|.+.-+.++. .|| +.-+..|+.-.+--+++..+|...+=.+..++..|..+...++...
T Consensus 411 ~Ar~~l~~~~~~l~~ikR~lek-----~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~ 485 (560)
T PF06160_consen 411 EAREKLQKLKQKLREIKRRLEK-----SNLPGLPEDYLDYFFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLE 485 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----cCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666555555 666 6666666666655556666666555556666666666666666555
Q ss_pred hhHHHHHH
Q 003961 544 SEKEEILV 551 (783)
Q Consensus 544 kEKeei~~ 551 (783)
.+-+.++.
T Consensus 486 ~~t~~li~ 493 (560)
T PF06160_consen 486 EKTEELID 493 (560)
T ss_pred HHHHHHHH
Confidence 44444443
No 129
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=91.13 E-value=43 Score=40.65 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Q 003961 381 LQKLEKDLKETCSERDKALQELTR 404 (783)
Q Consensus 381 lq~L~~eL~e~~~E~dKa~kEL~R 404 (783)
++.+...|.+...........+..
T Consensus 419 ~~~~~~~l~~~~~~~~~~~~~~~~ 442 (908)
T COG0419 419 LEELERELEELEEEIKKLEEQINQ 442 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444443333333333333
No 130
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=91.04 E-value=38 Score=39.89 Aligned_cols=29 Identities=10% Similarity=0.206 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003961 380 SLQKLEKDLKETCSERDKALQELTRLKQH 408 (783)
Q Consensus 380 slq~L~~eL~e~~~E~dKa~kEL~RLRqH 408 (783)
..+=|...|.+.+.+.+.++.+|...|+.
T Consensus 195 a~~~L~~ql~~l~~~l~~aE~~l~~fk~~ 223 (754)
T TIGR01005 195 AADFLAPEIADLSKQSRDAEAEVAAYRAQ 223 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666777777777664
No 131
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=90.93 E-value=3.4 Score=44.67 Aligned_cols=143 Identities=24% Similarity=0.245 Sum_probs=96.8
Q ss_pred HHhhcccCcccchhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhH-----hhHHHHHH
Q 003961 264 ELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLK-----MEKTELVA 338 (783)
Q Consensus 264 ~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk-----~~~~eL~a 338 (783)
+|+.+-||. -+-....+|.+||.++...|..+|.+|+.|---.++.+-..|-.---+|..||..|- ..+-+|+.
T Consensus 165 qlR~~llDP-Ainl~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s~Gria~Le~ 243 (330)
T KOG2991|consen 165 QLRSTLLDP-AINLFFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQASEGRIAELEI 243 (330)
T ss_pred HHHHHhhCh-HHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhhcccHHHHHH
Confidence 456666665 355677899999999999999999999999877777777777777778888888764 45667888
Q ss_pred HHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 003961 339 ALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKA 413 (783)
Q Consensus 339 ~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E 413 (783)
.|. |.++....+.-.-+++..- ++.++ ..-|-|.+++=.|...|++++.|+.++.+++..+.|..-++-
T Consensus 244 eLA-mQKs~seElkssq~eL~df---m~eLd--edVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~d~~ 312 (330)
T KOG2991|consen 244 ELA-MQKSQSEELKSSQEELYDF---MEELD--EDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVGDKK 312 (330)
T ss_pred HHH-HHHhhHHHHHHhHHHHHHH---HHHHH--HHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 875 4444333333222222110 11111 123445666667888888888888888888888887754443
No 132
>PRK12704 phosphodiesterase; Provisional
Probab=90.68 E-value=38 Score=39.25 Aligned_cols=15 Identities=20% Similarity=0.257 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHhh
Q 003961 576 KLRLAVEQSMTRLNR 590 (783)
Q Consensus 576 kLR~ALeqsl~RL~~ 590 (783)
+.|.-|..||+|+-.
T Consensus 189 ~a~~i~~~a~qr~a~ 203 (520)
T PRK12704 189 KAKEILAQAIQRCAA 203 (520)
T ss_pred HHHHHHHHHHHhhcc
Confidence 567788999998854
No 133
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=90.68 E-value=18 Score=35.47 Aligned_cols=134 Identities=21% Similarity=0.323 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCcccchhHHHHHHHHHhhhHHHHHHHHHHhccccc
Q 003961 226 YESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRRED 305 (783)
Q Consensus 226 ~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~ 305 (783)
...+|..+|+.+..-+.+++.++.+|..-.-+.+-+.. +|-+-.-++...+...+.|+-.|+.+|....+.
T Consensus 4 k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~------iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~--- 74 (177)
T PF13870_consen 4 KRNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHL------IDFEQLKIENQQLNEKIEERNKELLKLKKKIGK--- 74 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 45678888888888888888888887765555544331 344445567788888999999999999876443
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHH
Q 003961 306 GDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLE 385 (783)
Q Consensus 306 e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~ 385 (783)
..-.+..+|.-+..+..++..++.++..... .+..++
T Consensus 75 --~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~-----------------------------------------~~~~~r 111 (177)
T PF13870_consen 75 --TVQILTHVKEKLHFLSEELERLKQELKDREE-----------------------------------------ELAKLR 111 (177)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------HHHHHH
Confidence 1124445555555555554444444433333 244566
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003961 386 KDLKETCSERDKALQELTRLKQHLIE 411 (783)
Q Consensus 386 ~eL~e~~~E~dKa~kEL~RLRqHLLe 411 (783)
.+|.....+++++.+...+|++..=.
T Consensus 112 ~~l~~~k~~r~k~~~~~~~l~~~~~~ 137 (177)
T PF13870_consen 112 EELYRVKKERDKLRKQNKKLRQQGGL 137 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 66777888899999999999877433
No 134
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=90.27 E-value=24 Score=41.70 Aligned_cols=49 Identities=18% Similarity=0.073 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHhhhHHhHhH--hhhhHHHHhhhhHHHhhhhhccccchhh
Q 003961 72 EIERYKAEIKRLQESEAEIKA--LSVNYAALLKEKEEQISRLNGEYGLLKQ 120 (783)
Q Consensus 72 eie~ykaei~~lq~seaeika--ls~nyaallkekedqi~rl~~engslk~ 120 (783)
=|-+.=.+|=-.=.|-.++-- ++|-|--+--||-.-+--+.+-|=++..
T Consensus 112 IipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k~nlsvhe 162 (607)
T KOG0240|consen 112 IIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEKTNLSVHE 162 (607)
T ss_pred cHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcccCCceeec
Confidence 355665665433333333322 5678888888887766555555544443
No 135
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=90.26 E-value=31 Score=37.59 Aligned_cols=33 Identities=6% Similarity=0.091 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHHHHhccc
Q 003961 314 NLKRVVATLEKENNSLKMEKTELVAALEKNRKS 346 (783)
Q Consensus 314 sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~ 346 (783)
.....++-|+.+...++.+..+.+.+|...|..
T Consensus 168 ~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~ 200 (444)
T TIGR03017 168 PAQKAALWFVQQIAALREDLARAQSKLSAYQQE 200 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666677777778888888888854
No 136
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.08 E-value=4.6 Score=40.26 Aligned_cols=104 Identities=26% Similarity=0.325 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHH
Q 003961 310 DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLK 389 (783)
Q Consensus 310 ~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~ 389 (783)
..+.++...+..++.|...+...++++-..|..+- ..++.++..+.
T Consensus 67 ~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~----------------------------------~~l~~l~~~~~ 112 (194)
T PF08614_consen 67 AQISSLEQKLAKLQEELAELYRSKGELAQQLVELN----------------------------------DELQELEKELS 112 (194)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccc----------------------------------cccchhhhhHH
Confidence 34566677777777777777766666655554433 11223333333
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003961 390 ETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQT 451 (783)
Q Consensus 390 e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~ 451 (783)
+.......+..++..|+..+-+.+. .+.+-.+.|+.|..+.-....+...+|..+..-
T Consensus 113 ~~~~~l~~l~~~~~~L~~~~~~l~~----~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l 170 (194)
T PF08614_consen 113 EKERRLAELEAELAQLEEKIKDLEE----ELKEKNKANEILQDELQALQLQLNMLEEKLRKL 170 (194)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433322 222224566677777777777778877776654
No 137
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=89.88 E-value=44 Score=38.68 Aligned_cols=57 Identities=25% Similarity=0.303 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003961 395 RDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEF 458 (783)
Q Consensus 395 ~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeel 458 (783)
++++..|+.|||..|-.-+.+.++||-. ++++---+|.....+++.|+.++.+++-+
T Consensus 255 i~~l~~EveRlrt~l~~Aqk~~~ek~~q-------y~~Ee~~~reen~rlQrkL~~e~erReal 311 (552)
T KOG2129|consen 255 IDKLQAEVERLRTYLSRAQKSYQEKLMQ-------YRAEEVDHREENERLQRKLINELERREAL 311 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788889999999998888888887765 44444456666678888888888877654
No 138
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=89.63 E-value=31 Score=36.60 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=12.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Q 003961 386 KDLKETCSERDKALQELTRLKQH 408 (783)
Q Consensus 386 ~eL~e~~~E~dKa~kEL~RLRqH 408 (783)
.++..+..+..++..++.+|+..
T Consensus 81 ~~l~~l~~~~~~l~a~~~~l~~~ 103 (423)
T TIGR01843 81 ADAAELESQVLRLEAEVARLRAE 103 (423)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444545555555566665443
No 139
>PF13514 AAA_27: AAA domain
Probab=89.48 E-value=65 Score=40.10 Aligned_cols=142 Identities=20% Similarity=0.281 Sum_probs=75.5
Q ss_pred HHHHhhcccCcccchhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcch-HHHHHHHHHH------HHHHhhhhhHhhHH
Q 003961 262 QDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDAND-VVENLKRVVA------TLEKENNSLKMEKT 334 (783)
Q Consensus 262 qe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~-~~~sLk~~~~------~L~kEn~tlk~~~~ 334 (783)
.+.+..|.=.+......+..++.++.+...++.+++.++..-....... ....|..... .+......+.....
T Consensus 345 ~~~i~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~~~~~~d~~~~~~~~~~~~~~~~~ 424 (1111)
T PF13514_consen 345 RERIRELLQEREQLEQALAQARRELEEAERELEQLQAELAALPAPPDPEALRAALEAAQRLGDLEARLQEAEQALEAAER 424 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCChHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 3455555555556666777888888888888988988887765554443 3333333222 33333333333444
Q ss_pred HHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 003961 335 ELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKA 413 (783)
Q Consensus 335 eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E 413 (783)
.|...|..+.- -..+...+ ..-+..+..+-+.+....+.+...+.......+.+..++.++...+-...
T Consensus 425 ~l~~~l~~L~~-----w~~~~~~l-----~~~~~P~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 493 (1111)
T PF13514_consen 425 RLAAALAALGP-----WSGDLDAL-----AALPLPSRETVEAFRAEFEELERQLRRARDRLEELEEELARLEARLRRLA 493 (1111)
T ss_pred HHHHHHHhcCC-----CCCChHHH-----hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444431 11111111 01111112234445555666666666777777777777777766544443
No 140
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=89.39 E-value=48 Score=38.43 Aligned_cols=16 Identities=13% Similarity=0.146 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHhhc
Q 003961 576 KLRLAVEQSMTRLNRM 591 (783)
Q Consensus 576 kLR~ALeqsl~RL~~m 591 (783)
+.|+-|..||+|+...
T Consensus 183 ~a~~i~~~aiqr~a~~ 198 (514)
T TIGR03319 183 KAKEILATAIQRYAGD 198 (514)
T ss_pred HHHHHHHHHHHhccch
Confidence 4577899999998543
No 141
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=89.31 E-value=11 Score=38.79 Aligned_cols=87 Identities=26% Similarity=0.358 Sum_probs=67.3
Q ss_pred HHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 003961 452 LAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEY 531 (783)
Q Consensus 452 ~a~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~ 531 (783)
.|+|+...|.++.|.+.+...|-.|..++.+.-.+++..+.||--|+++|-- +.+..+.+-++++++.-...
T Consensus 67 ~a~QDqF~~~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~--------eemQe~i~~L~kev~~~~er 138 (201)
T KOG4603|consen 67 FADQDQFDMVSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTT--------EEMQEEIQELKKEVAGYRER 138 (201)
T ss_pred eecHHhhcCCChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh--------HHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999999999999888888889999999999842 22334445677777777777
Q ss_pred HHHhhhHH-HHhhhhH
Q 003961 532 LKNADQRA-EVSRSEK 546 (783)
Q Consensus 532 Lk~a~q~i-e~~~kEK 546 (783)
|+..+.++ .++.++|
T Consensus 139 l~~~k~g~~~vtpedk 154 (201)
T KOG4603|consen 139 LKNIKAGTNHVTPEDK 154 (201)
T ss_pred HHHHHHhcccCCHHHH
Confidence 77777765 3344444
No 142
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=89.19 E-value=12 Score=35.82 Aligned_cols=90 Identities=26% Similarity=0.287 Sum_probs=60.5
Q ss_pred HHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH---HHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHh
Q 003961 486 TIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSE---YLKNADQRAEVSRSEKEEILVKLSHSEKMLAE 562 (783)
Q Consensus 486 aleAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~---~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e 562 (783)
+|..+..|+..||.-|..+.++.+. +++++++|+. .++.....+.....+..++-.++...=.++-+
T Consensus 24 ~lr~~E~E~~~l~~el~~l~~~r~~----------l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGE 93 (120)
T PF12325_consen 24 QLRRLEGELASLQEELARLEAERDE----------LREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGE 93 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7788888888888888888887755 4455555443 23444444555566666666666666666777
Q ss_pred hhhhhhhhHHhHHHHHHHHHHHH
Q 003961 563 GKGRANKLEEDNAKLRLAVEQSM 585 (783)
Q Consensus 563 ~K~~~~KL~eDn~kLR~ALeqsl 585 (783)
.-+.+.-|+-|+.-|+.-+..=+
T Consensus 94 K~E~veEL~~Dv~DlK~myr~Qi 116 (120)
T PF12325_consen 94 KSEEVEELRADVQDLKEMYREQI 116 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888888888877654433
No 143
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=88.98 E-value=22 Score=34.67 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=15.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 003961 385 EKDLKETCSERDKALQELTRLKQHLIEKA 413 (783)
Q Consensus 385 ~~eL~e~~~E~dKa~kEL~RLRqHLLe~E 413 (783)
..++.+.........+||..+..++-+..
T Consensus 80 ~~e~~~~~~~l~~l~~el~~l~~~~~~~~ 108 (191)
T PF04156_consen 80 QGELSELQQQLQQLQEELDQLQERIQELE 108 (191)
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555544443
No 144
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=88.93 E-value=63 Score=39.26 Aligned_cols=31 Identities=32% Similarity=0.445 Sum_probs=26.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 003961 383 KLEKDLKETCSERDKALQELTRLKQHLIEKAQ 414 (783)
Q Consensus 383 ~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~ 414 (783)
.|..||.-.+.|||++..||. |=.|||.-+.
T Consensus 475 dL~~ELqqLReERdRl~aeLq-lSa~liqqeV 505 (739)
T PF07111_consen 475 DLSLELQQLREERDRLDAELQ-LSARLIQQEV 505 (739)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHH
Confidence 456778889999999999998 8899997764
No 145
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.67 E-value=60 Score=38.64 Aligned_cols=228 Identities=13% Similarity=0.076 Sum_probs=125.6
Q ss_pred HHhhchHHHHHHhhcccCcccchhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhH
Q 003961 254 EQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEK 333 (783)
Q Consensus 254 e~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~ 333 (783)
|-+.=-+..+++...-..-+.-+|.+..+..||-....-++-|++-++-.--. +++.-.+-..+.++.+|..-|..+.
T Consensus 175 Ec~ris~~~eQ~~l~segNq~gsm~argl~~ELR~qr~rnq~Le~~ssS~~g~--~~~~~~~~ae~~~~~~e~~llr~t~ 252 (654)
T KOG4809|consen 175 ECKRISFCSEQNALHSEGNQPGSMNARGLSAELRNQRARNQPLEINSSSAKGL--GYTCLGRLAELLTTKEEQFLLRSTD 252 (654)
T ss_pred HHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHHhhcchhhhhhhcccCC--CchHHHHHHHhhhHHHHHHHHHhcC
Confidence 55555566677777666666789999999999977777788788777653211 1233335556666666666665555
Q ss_pred HHHHHHHHHhcccCCCcc---cCCCCCCCCcCC-CCCCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003961 334 TELVAALEKNRKSSNEKI---FPDASEYPSRLD-GMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHL 409 (783)
Q Consensus 334 ~eL~a~L~~~r~~~~~k~---~~da~e~~~r~~-d~~~~~sf~~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHL 409 (783)
-+++-.+++-+-++.-+- .-=-+.++++.- -..+..-|.+.--+-..+.. . +-+.+.=+.||+..=
T Consensus 253 ~~~e~riEtqkqtl~ardesIkkLlEmLq~kgmg~~~~~~df~~~~~~a~~~~h-------~---r~~~er~IerLkeqr 322 (654)
T KOG4809|consen 253 PSGEQRIETQKQTLDARDESIKKLLEMLQRKGMGRSNQPRDFTKANLSAHEMAH-------M---RMKVERIIERLKEQR 322 (654)
T ss_pred chHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccccchhhHHHHHHhHHHHHh-------h---hchHHHHHHHhcchh
Confidence 555555554442211000 000000000000 01111112211111000111 1 111122333444321
Q ss_pred HHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHh
Q 003961 410 IEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEA 489 (783)
Q Consensus 410 Le~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeA 489 (783)
.-. |-| |- ..|+-.+-++...+.+|..+.++|+.+++.+.+++ ++..-+..-+..+-.+|-.-.=+|++
T Consensus 323 ~rd---erE-~~---EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlk----ehassLas~glk~ds~Lk~leIalEq 391 (654)
T KOG4809|consen 323 ERD---ERE-RL---EEIESFRKENKDLKEKVNALQAELTEKESSLIDLK----EHASSLASAGLKRDSKLKSLEIALEQ 391 (654)
T ss_pred hhh---HHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 111 111 11 23677777899999999999999999999887764 33444566677777777776668999
Q ss_pred hhhhHhhHHHHHHHH
Q 003961 490 KNVELLNLQTALGQY 504 (783)
Q Consensus 490 KnvEl~NLQtALgqf 504 (783)
++.+|.-+..-|-+-
T Consensus 392 kkEec~kme~qLkkA 406 (654)
T KOG4809|consen 392 KKEECSKMEAQLKKA 406 (654)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998888877654
No 146
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=88.49 E-value=32 Score=35.26 Aligned_cols=172 Identities=18% Similarity=0.223 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003961 381 LQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKM 460 (783)
Q Consensus 381 lq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~ 460 (783)
+-.|+++|.+++.+.+....|..-||+-..--+. +-.+.+.... +|=+-.-.+
T Consensus 14 i~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~k-AL~k~e~~e~---~Lpqll~~h----------------------- 66 (194)
T PF15619_consen 14 IKELQNELAELQRKLQELRKENKTLKQLQKRQEK-ALQKYEDTEA---ELPQLLQRH----------------------- 66 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhh---hHHHHHHHH-----------------------
Confidence 3467788888888888888888777764322110 1112211100 111111111
Q ss_pred hchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 003961 461 MNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAE 540 (783)
Q Consensus 461 ~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie 540 (783)
.+|+..+++.+.+.+.+.-+.-..+.-++.+|..++..|..+..=++.+-=.++ ..+...+..+...|.+++..|.
T Consensus 67 --~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eR--eeL~~kL~~~~~~l~~~~~ki~ 142 (194)
T PF15619_consen 67 --NEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAER--EELQRKLSQLEQKLQEKEKKIQ 142 (194)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 234555555555555555555556666777777777777777666554421111 1223355555666666666665
Q ss_pred HhhhhHHHHH----HhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHH
Q 003961 541 VSRSEKEEIL----VKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQ 583 (783)
Q Consensus 541 ~~~kEKeei~----~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeq 583 (783)
...+..+... ..+....+...++...+..|..++..|+.-|.+
T Consensus 143 ~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 143 ELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5433322221 123444455666666777777777777766643
No 147
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.25 E-value=69 Score=38.87 Aligned_cols=73 Identities=25% Similarity=0.263 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhh
Q 003961 393 SERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKS 469 (783)
Q Consensus 393 ~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~s 469 (783)
++.|+..+.+.||++-- +-.+.-+++|-+ .+++.+-.+..-..++..+-.++-.+.|....++..++.-+..+
T Consensus 98 ~~~dr~~~~~~~l~~~q-~a~~~~e~~lq~---q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~ 170 (716)
T KOG4593|consen 98 AEVDRKHKLLTRLRQLQ-EALKGQEEKLQE---QLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSEL 170 (716)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666777777654 111111233333 35666655666667778777777777777666666665433333
No 148
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=88.05 E-value=29 Score=37.90 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003961 376 EMEQSLQKLEKDLKETCSERDKALQELTRLKQH 408 (783)
Q Consensus 376 eme~slq~L~~eL~e~~~E~dKa~kEL~RLRqH 408 (783)
+|+.+|+.|+.-+.++..+..++.-|+.|+|-.
T Consensus 49 elesqL~q~etrnrdl~t~nqrl~~E~e~~Kek 81 (333)
T KOG1853|consen 49 ELESQLDQLETRNRDLETRNQRLTTEQERNKEK 81 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777778877788888888777755
No 149
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=88.04 E-value=4.6 Score=34.90 Aligned_cols=43 Identities=33% Similarity=0.454 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 003961 496 NLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEV 541 (783)
Q Consensus 496 NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~ 541 (783)
+||+||+ +|+-|+.-+..||..++..+-.+...|++|..+...
T Consensus 1 elQsaL~---~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~e 43 (61)
T PF08826_consen 1 ELQSALE---AEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRE 43 (61)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899884 899999999999998888888777777777666433
No 150
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=87.96 E-value=59 Score=37.70 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=16.9
Q ss_pred HHHHHHHHHhhhHHhHhHhhhhH
Q 003961 75 RYKAEIKRLQESEAEIKALSVNY 97 (783)
Q Consensus 75 ~ykaei~~lq~seaeikals~ny 97 (783)
++..+|..|.+--.+|..++|++
T Consensus 26 ~~~~~i~~Le~~k~~l~~~pv~~ 48 (569)
T PRK04778 26 RNYKRIDELEERKQELENLPVND 48 (569)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHH
Confidence 45667777777777888777764
No 151
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=87.95 E-value=26 Score=35.77 Aligned_cols=67 Identities=21% Similarity=0.228 Sum_probs=40.6
Q ss_pred HHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHh
Q 003961 486 TIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVK 552 (783)
Q Consensus 486 aleAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~K 552 (783)
-|.....++..|+..|.+|..+.-+-..+...+....+++..|.-.-..-.++.+...+|+.++..+
T Consensus 63 pL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~k 129 (201)
T PF13851_consen 63 PLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRK 129 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455778888888888887766555555555555555555544444455555555666665555
No 152
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=87.26 E-value=14 Score=40.89 Aligned_cols=84 Identities=21% Similarity=0.328 Sum_probs=51.6
Q ss_pred HHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhh-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhh
Q 003961 465 EIQKSKEIIDGLNNKLANCMRTIEAKNVELLN-LQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSR 543 (783)
Q Consensus 465 E~~~ske~iedL~~~L~~~mealeAKnvEl~N-LQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~ 543 (783)
..-..+.+++.|.+++...++.|.++-.-|+| |..-+. +.+.++.++..+....+.+...+....
T Consensus 235 ~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~--------------eYr~~~~~ls~~~~~y~~~s~~V~~~t 300 (359)
T PF10498_consen 235 ALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQ--------------EYRSAQDELSEVQEKYKQASEGVSERT 300 (359)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--------------HHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34556778888888999999999887665544 333334 444455555555555556666665555
Q ss_pred hhHHHHHHhhhHHHHHHHh
Q 003961 544 SEKEEILVKLSHSEKMLAE 562 (783)
Q Consensus 544 kEKeei~~KLs~~E~~l~e 562 (783)
++...|..+|.+......+
T Consensus 301 ~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 301 RELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6655666665555544433
No 153
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=87.25 E-value=62 Score=37.18 Aligned_cols=69 Identities=20% Similarity=0.300 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHHHh
Q 003961 312 VENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKET 391 (783)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e~ 391 (783)
.++.+..|+.++++...-..+...|+..|.... ..+..++.+|+++
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e----------------------------------~~i~~~~~ql~~s 85 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLE----------------------------------TEIASLEAQLIET 85 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------HHHHHHHHHHHHH
Confidence 445555666666655555555555555544333 3355677778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 003961 392 CSERDKALQELTRLKQHLIEKAQ 414 (783)
Q Consensus 392 ~~E~dKa~kEL~RLRqHLLe~E~ 414 (783)
..+++++.+.|..+...|-..+.
T Consensus 86 ~~~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 86 ADDLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HhHHHHHHhhHHHHHHHHHHHHH
Confidence 88888888888887777666654
No 154
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=87.20 E-value=89 Score=38.95 Aligned_cols=49 Identities=8% Similarity=0.043 Sum_probs=32.3
Q ss_pred HHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHH
Q 003961 285 ELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAA 339 (783)
Q Consensus 285 el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~ 339 (783)
.|...+..+..++..+...+ .+..++..++.++.....++..+..+...
T Consensus 597 ~l~~~~~~~~~~~~~l~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 645 (1047)
T PRK10246 597 DIQPWLDAQEEHERQLRLLS------QRHELQGQIAAHNQQIIQYQQQIEQRQQQ 645 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555433 25777888888888888888888887777
No 155
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=86.79 E-value=1e+02 Score=39.24 Aligned_cols=68 Identities=12% Similarity=0.156 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHHHhH
Q 003961 313 ENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKETC 392 (783)
Q Consensus 313 ~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e~~ 392 (783)
+..+...+.+++..+++-.+..++...|+..+... ++ -.... ...++|+.+.....+|.+.+
T Consensus 61 ~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~-----~~---------~~~~~----s~~~Leq~l~~~~~~L~~~q 122 (1109)
T PRK10929 61 KGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEP-----RS---------VPPNM----STDALEQEILQVSSQLLEKS 122 (1109)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccc-----cc---------ccccC----CHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666666777777777655221 00 00111 13577776666666666665
Q ss_pred HHHHHH
Q 003961 393 SERDKA 398 (783)
Q Consensus 393 ~E~dKa 398 (783)
......
T Consensus 123 ~~l~~~ 128 (1109)
T PRK10929 123 RQAQQE 128 (1109)
T ss_pred HHHHHH
Confidence 544433
No 156
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=86.75 E-value=6.8 Score=42.30 Aligned_cols=77 Identities=26% Similarity=0.307 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHH
Q 003961 310 DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLK 389 (783)
Q Consensus 310 ~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~ 389 (783)
-.++.|+..++.+++|.++|..-...|. .. .+.. ..-.+++..++.|+.+-.
T Consensus 9 ~l~~~l~~~~~~~~~E~~~Y~~fL~~l~----~~-------------------~~~~-----~~~~~~~~el~~le~Ee~ 60 (314)
T PF04111_consen 9 LLLEQLDKQLEQAEKERDTYQEFLKKLE----EE-------------------SDSE-----EDIEELEEELEKLEQEEE 60 (314)
T ss_dssp --------------------------------------------------------H-----H--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----hc-------------------CCcc-----hHHHHHHHHHHHHHHHHH
Confidence 3677888888888888888766555554 00 0000 123455566667777777
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhh
Q 003961 390 ETCSERDKALQELTRLKQHLIEKAQ 414 (783)
Q Consensus 390 e~~~E~dKa~kEL~RLRqHLLe~E~ 414 (783)
++..|..++.+|...|.+.+-+.+.
T Consensus 61 ~l~~eL~~LE~e~~~l~~el~~le~ 85 (314)
T PF04111_consen 61 ELLQELEELEKEREELDQELEELEE 85 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777665554
No 157
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=86.72 E-value=40 Score=34.53 Aligned_cols=50 Identities=34% Similarity=0.490 Sum_probs=41.6
Q ss_pred HHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhc
Q 003961 283 RKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 283 ~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (783)
|.=|++++..|.+|+-+| .-|+..++.|.+||.+|+.-...-+.+|...-
T Consensus 4 ~rvlSar~~ki~~L~n~l------------~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e 53 (194)
T PF15619_consen 4 QRVLSARLHKIKELQNEL------------AELQRKLQELRKENKTLKQLQKRQEKALQKYE 53 (194)
T ss_pred HHHHHhhHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455788889999998765 46899999999999999998888888886554
No 158
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=86.27 E-value=56 Score=35.73 Aligned_cols=44 Identities=20% Similarity=0.304 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhh
Q 003961 521 AREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGK 564 (783)
Q Consensus 521 aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K 564 (783)
.+.++..+...|..-...|+....+|.++...+..++++..+-+
T Consensus 223 ~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r 266 (312)
T smart00787 223 KVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCR 266 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33344444445555555555555556566666666666555433
No 159
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=86.26 E-value=86 Score=39.62 Aligned_cols=181 Identities=22% Similarity=0.251 Sum_probs=91.8
Q ss_pred HHHHHH-hcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHHHhH--------HH------HHHHHHH
Q 003961 337 VAALEK-NRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKETC--------SE------RDKALQE 401 (783)
Q Consensus 337 ~a~L~~-~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e~~--------~E------~dKa~kE 401 (783)
+.+||+ +|-++|+++..- -| .|-.|.+-.||-++-+|+=.-.+-+ +- .--...|
T Consensus 344 ESKLTRLLQDSLGGkTKT~---------iI--ATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~E 412 (1041)
T KOG0243|consen 344 ESKLTRLLQDSLGGKTKTC---------II--ATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEE 412 (1041)
T ss_pred HHHHHHHHHHHhCCCceeE---------EE--EEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHH
Confidence 467776 467788766543 11 2234677788888887654432211 00 1123457
Q ss_pred HHHHHHHHHHHhhhh-----hhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhh
Q 003961 402 LTRLKQHLIEKAQEE-----SEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGL 476 (783)
Q Consensus 402 L~RLRqHLLe~E~Ee-----~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL 476 (783)
+.|||+.|.+..+-. ++.+-.++..-.+.-+.++.+..+|..+++.++.-.+... +.. +.-.+|
T Consensus 413 IerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~-----~~~------~~~~~l 481 (1041)
T KOG0243|consen 413 IERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYM-----NQL------EIKELL 481 (1041)
T ss_pred HHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hHH------HHHHHH
Confidence 888888888876522 2444222111122222344555555555555544322211 111 223345
Q ss_pred hhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHH----HHHHHHHHHHhhhHH
Q 003961 477 NNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREE----SAKLSEYLKNADQRA 539 (783)
Q Consensus 477 ~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree----~a~Ls~~Lk~a~q~i 539 (783)
+.++..+-..|..++.+|.+++.=+.+-.+....++.+-..+-..-.. ..+|-..|..+...+
T Consensus 482 ~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~ 548 (1041)
T KOG0243|consen 482 KEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDL 548 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555666677777777777777777755554444333332222 333444444444443
No 160
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=86.21 E-value=28 Score=40.31 Aligned_cols=64 Identities=33% Similarity=0.461 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHH--hHHHHHHHHHHHHHHHHHH
Q 003961 376 EMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRE--NNEYQRAQILHLENVLKQT 451 (783)
Q Consensus 376 eme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELre--enE~~R~~Is~lEraLK~~ 451 (783)
-+|++++.|++.|..++.|..-..-|-.-|+.. |+|. -.+.|||+ +|+..|.+|.++..+|+++
T Consensus 256 ~aEqsl~dlQk~Lekar~e~rnvavek~~lerk-----------l~ea-~rl~elreg~e~e~~rkelE~lR~~L~kA 321 (575)
T KOG4403|consen 256 RAEQSLEDLQKRLEKAREEQRNVAVEKLDLERK-----------LDEA-PRLSELREGVENETSRKELEQLRVALEKA 321 (575)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHH-----------Hhhh-hhhhhhhcchhHHHHHHHHHHHHHHHHHH
Confidence 577888888888887777754444443333333 3332 23455665 5666666666666666654
No 161
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=85.73 E-value=29 Score=33.90 Aligned_cols=34 Identities=26% Similarity=0.365 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhc
Q 003961 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (783)
-+..++..+..+.+|...+.....++...+..++
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~ 115 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLK 115 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666666665
No 162
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=85.65 E-value=60 Score=35.48 Aligned_cols=43 Identities=19% Similarity=0.169 Sum_probs=22.6
Q ss_pred HHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHH
Q 003961 465 EIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAE 507 (783)
Q Consensus 465 E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE 507 (783)
-++.++.++.++..+|+........++-.+..|+..+.+..+.
T Consensus 255 ~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~ 297 (444)
T TIGR03017 255 IIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQ 297 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH
Confidence 4555666666666666655444444444555555444444443
No 163
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=85.52 E-value=91 Score=37.47 Aligned_cols=119 Identities=23% Similarity=0.247 Sum_probs=65.5
Q ss_pred HhhHHhhhchhHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCcccchhHHHHHHHHHh
Q 003961 208 LADLLEEKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELN 287 (783)
Q Consensus 208 ~~d~le~~~~~~aa~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ 287 (783)
|-..|++..+-++..|...+..-+.|..+-...+.-.. ..++.....+=++||.|...|- |-+..-+.-.=-..
T Consensus 20 LQreLd~~~~~l~~~Q~~S~~srk~L~e~trefkk~~p--e~k~k~~~~llK~yQ~EiD~Lt----kRsk~aE~afl~vy 93 (629)
T KOG0963|consen 20 LQRELDAEATEIAQRQDESEISRKRLAEETREFKKNTP--EDKLKMVNPLLKSYQSEIDNLT----KRSKFAEAAFLDVY 93 (629)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHhccCc--HHHHHHHHHHHHHHHHHHHHHH----HHHHhhHHHHHHHH
Confidence 55677888888888888877777766654433333322 3456677888899999987652 22222222111122
Q ss_pred hhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHH---hhhhhHhhHHHHHHHHHHhc
Q 003961 288 GKLSELRRLQMELNRREDGDANDVVENLKRVVATLEK---ENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 288 ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~k---En~tlk~~~~eL~a~L~~~r 344 (783)
+++. +-.|+-.+..+....+-.+++ ||..|+-+.-+++..|.-.+
T Consensus 94 e~L~------------eaPDP~pll~sa~~~l~k~~~~~~e~~~lk~~lee~~~el~~~k 141 (629)
T KOG0963|consen 94 EKLI------------EAPDPVPLLASAAELLNKQQKASEENEELKEELEEVNNELADLK 141 (629)
T ss_pred HHHh------------hCCCCchHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHhhhh
Confidence 2222 223333444444444444433 56666666666666555444
No 164
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=85.06 E-value=86 Score=36.78 Aligned_cols=6 Identities=17% Similarity=-0.208 Sum_probs=2.9
Q ss_pred ccccCC
Q 003961 29 KIYDSR 34 (783)
Q Consensus 29 ~~~~~~ 34 (783)
.|+||+
T Consensus 32 ~i~G~N 37 (650)
T TIGR03185 32 LIGGLN 37 (650)
T ss_pred EEECCC
Confidence 455554
No 165
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=84.37 E-value=58 Score=39.33 Aligned_cols=158 Identities=13% Similarity=0.191 Sum_probs=83.7
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCcccchhHHHHHHHHHhhhHHHHHHHHHHh
Q 003961 221 AERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMEL 300 (783)
Q Consensus 221 a~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l 300 (783)
.++...+.-++.|+.+.+++..++.+++-+...=+..-+-+.+. --++.+-|+.|..++..+.++=..
T Consensus 558 ~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR-----------~e~a~d~Qe~L~~R~~~vl~~l~~- 625 (717)
T PF10168_consen 558 LAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAER-----------YEEAKDKQEKLMKRVDRVLQLLNS- 625 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 34555566677777777777777766654433222222222211 123445566666665555432221
Q ss_pred cccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHH
Q 003961 301 NRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQS 380 (783)
Q Consensus 301 ~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~s 380 (783)
....-++.=...+.+++.++.+...|+..+..+..++..-+.....+.. ...++..+|. .+
T Consensus 626 ---~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~-----------~~~~s~~L~~-----~Q 686 (717)
T PF10168_consen 626 ---QLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIESQKS-----------PKKKSIVLSE-----SQ 686 (717)
T ss_pred ---cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----------ccCCCccCCH-----HH
Confidence 1122333444455555555555555666666666555543321111000 0011122222 23
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003961 381 LQKLEKDLKETCSERDKALQELTRLKQHL 409 (783)
Q Consensus 381 lq~L~~eL~e~~~E~dKa~kEL~RLRqHL 409 (783)
....+..|++.-.+++.+.+++.+++.|+
T Consensus 687 ~~~I~~iL~~~~~~I~~~v~~ik~i~~~~ 715 (717)
T PF10168_consen 687 KRTIKEILKQQGEEIDELVKQIKNIKKIV 715 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55778889999999999999999999884
No 166
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=84.04 E-value=47 Score=32.90 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=14.6
Q ss_pred HHHHHHhhhhhHhhHHHHHHHHHHhc
Q 003961 319 VATLEKENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 319 ~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (783)
+...+-+++.|+-.+-.|++.|..+.
T Consensus 12 LK~~~~e~dsle~~v~~LEreLe~~q 37 (140)
T PF10473_consen 12 LKESESEKDSLEDHVESLERELEMSQ 37 (140)
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHH
Confidence 34445555556666666666665555
No 167
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=83.67 E-value=78 Score=35.16 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhccc
Q 003961 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRKS 346 (783)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~ 346 (783)
.+.+|+.....|+.|..+++..-..|...+..+|..
T Consensus 28 ~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~ 63 (310)
T PF09755_consen 28 RIESLQQENRVLKRELETEKARCKHLQEENRALREA 63 (310)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666667777777777777777744
No 168
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=83.41 E-value=77 Score=34.94 Aligned_cols=52 Identities=27% Similarity=0.319 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhc
Q 003961 278 EITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 278 ~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (783)
.|-..-+|+-.|...++..-.++.-.. ..|.++-+.|..++++|+++...|+
T Consensus 3 ~~~~~~~E~e~K~~~lk~~~~e~~ekR---------------~El~~~~~~~~ekRdeln~kvrE~~ 54 (294)
T COG1340 3 AMLDKLDELELKRKQLKEEIEELKEKR---------------DELRKEASELAEKRDELNAKVRELR 54 (294)
T ss_pred hHHHhhhHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555667777766666655555433 3444455555555555665555555
No 169
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=83.23 E-value=11 Score=33.38 Aligned_cols=69 Identities=29% Similarity=0.278 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHHHh
Q 003961 312 VENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKET 391 (783)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e~ 391 (783)
+.-.-..|..|+|||=+||+.+--|+..|..+- |+ +.+ .+.++..++
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~--------~~------------------~~~-------~~~keNieL 48 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLG--------PE------------------SIE-------ELLKENIEL 48 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcc--------cc------------------cHH-------HHHHHHHHH
Confidence 344567899999999999999999999998433 11 222 344555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 003961 392 CSERDKALQELTRLKQHLIEKA 413 (783)
Q Consensus 392 ~~E~dKa~kEL~RLRqHLLe~E 413 (783)
..++.-+.+||.++++.|.+.+
T Consensus 49 Kve~~~L~~el~~~~~~l~~a~ 70 (75)
T PF07989_consen 49 KVEVESLKRELQEKKKLLKEAE 70 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777888888888776654
No 170
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=83.11 E-value=5.1 Score=46.57 Aligned_cols=133 Identities=23% Similarity=0.263 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHhhhHHHHHHHHHHhccccc----------------CCcc--hHHHHHHHHHHHHHHhhhhhHhhHHH
Q 003961 274 KTSIEITEMRKELNGKLSELRRLQMELNRRED----------------GDAN--DVVENLKRVVATLEKENNSLKMEKTE 335 (783)
Q Consensus 274 kts~~~~~~~~el~ek~sei~rlq~~l~~~e~----------------e~~~--~~~~sLk~~~~~L~kEn~tlk~~~~e 335 (783)
+....++.|+++..+.+.+|..|+..+-.--+ .+.. +-++.|+..|..|++|.+.-..+..+
T Consensus 88 ~L~~~le~l~~~~~eR~~~~~~L~~~~~~l~~~Lg~~~~~~~~~~~~~~~l~S~~~l~~l~~~l~~L~~e~~~R~~~v~~ 167 (619)
T PF03999_consen 88 KLRPQLEELRKEKEERMQEFKELQEQLEQLCEELGELPLCLNPFDIDESDLPSLEELEELRQHLQRLQEEKERRLEEVRE 167 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666676666666666665543311110 1111 34566677777777777776666666
Q ss_pred HHHHHHHhcccCCCccc-CCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003961 336 LVAALEKNRKSSNEKIF-PDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIE 411 (783)
Q Consensus 336 L~a~L~~~r~~~~~k~~-~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe 411 (783)
|...|..+-+-++-... .+........ .+....|+-..+. +..|..-+.....+.......+..|+..+..
T Consensus 168 l~~~I~~l~~~L~~~~~~~~~e~~l~~~--~~~~~~~~Ls~~~---l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~ 239 (619)
T PF03999_consen 168 LREEIISLMEELGIDPERTSFEKDLLSY--SEDEESFCLSDEN---LEKLQELLQELEEEKEEREEKLQELREKIEE 239 (619)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhCCCcccccchhhcccc--ccccccCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666655444332 1111111100 0223334433332 2344444444444466666666677766554
No 171
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=81.68 E-value=85 Score=34.18 Aligned_cols=63 Identities=24% Similarity=0.320 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHH
Q 003961 515 ERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKL 577 (783)
Q Consensus 515 e~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kL 577 (783)
+..|+..+.++..+...|.......+...+|+..+...+...+..+.-+...+.-|..+...-
T Consensus 234 ~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW 296 (344)
T PF12777_consen 234 EEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERW 296 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhH
Confidence 344444444444444444444444444444554444444444444444444444444444333
No 172
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=81.64 E-value=1.4e+02 Score=36.57 Aligned_cols=89 Identities=26% Similarity=0.265 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--H----HHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHH----
Q 003961 434 NEYQRAQILHLENVLKQTLAK--Q----EEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQ---- 503 (783)
Q Consensus 434 nE~~R~~Is~lEraLK~~~a~--q----eelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgq---- 503 (783)
+.-+|.||-||.++....+.. + ..+....+.+...+-++|-+|+--|.++ ..+|+=|.+||-.
T Consensus 547 ~~~irdQikhL~~av~~t~e~srq~~~~~~~~~~~d~d~e~l~eqilKLKSLLSTK-------REQIaTLRTVLKANKqT 619 (717)
T PF09730_consen 547 VAIIRDQIKHLQRAVDRTTELSRQRVASRSSASEADKDKEELQEQILKLKSLLSTK-------REQIATLRTVLKANKQT 619 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcccccHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 567899999988887754321 1 1112223456666777888886555544 4444444444433
Q ss_pred -----------HHHHH----HHhhhhHHHHHHHHHHHHHHH
Q 003961 504 -----------YFAEI----EAKGHLERELALAREESAKLS 529 (783)
Q Consensus 504 -----------fqAE~----EA~ErLe~ELa~aree~a~Ls 529 (783)
|..|. |-...|+.||.+++++.|..+
T Consensus 620 AEvALanLKsKYE~EK~~v~etm~kLRnELK~LKEDAATFs 660 (717)
T PF09730_consen 620 AEVALANLKSKYENEKAMVSETMMKLRNELKALKEDAATFS 660 (717)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 222456666666666655544
No 173
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=81.54 E-value=55 Score=31.95 Aligned_cols=8 Identities=25% Similarity=0.397 Sum_probs=3.1
Q ss_pred HHHHHHHh
Q 003961 555 HSEKMLAE 562 (783)
Q Consensus 555 ~~E~~l~e 562 (783)
|+++....
T Consensus 112 ~~eRkv~~ 119 (143)
T PF12718_consen 112 HFERKVKA 119 (143)
T ss_pred HHHHHHHH
Confidence 33333333
No 174
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=81.20 E-value=52 Score=31.44 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 003961 500 ALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEV 541 (783)
Q Consensus 500 ALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~ 541 (783)
-|.++..+.+-.+.|...+...+.++..|.......+..++.
T Consensus 43 Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~ 84 (151)
T PF11559_consen 43 LLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEE 84 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344444455445444444444444444444333333333333
No 175
>PRK00106 hypothetical protein; Provisional
Probab=81.16 E-value=1.2e+02 Score=35.69 Aligned_cols=16 Identities=25% Similarity=0.214 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhhc
Q 003961 576 KLRLAVEQSMTRLNRM 591 (783)
Q Consensus 576 kLR~ALeqsl~RL~~m 591 (783)
+.|.-+..||+|+...
T Consensus 204 ~a~~ii~~aiqr~a~~ 219 (535)
T PRK00106 204 MAKDLLAQAMQRLAGE 219 (535)
T ss_pred HHHHHHHHHHHHhcch
Confidence 4577788999988543
No 176
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=81.05 E-value=23 Score=40.97 Aligned_cols=30 Identities=23% Similarity=0.358 Sum_probs=18.2
Q ss_pred HHHHhhhhhHhhHHHHHHHHHHHHHHhhhh
Q 003961 485 RTIEAKNVELLNLQTALGQYFAEIEAKGHL 514 (783)
Q Consensus 485 ealeAKnvEl~NLQtALgqfqAE~EA~ErL 514 (783)
+++.+++..|.-||.-|...-.-+||+..|
T Consensus 428 ~~~~s~d~~I~dLqEQlrDlmf~le~qqkl 457 (493)
T KOG0804|consen 428 EALGSKDEKITDLQEQLRDLMFFLEAQQKL 457 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhHheehhhhhhh
Confidence 355666666666777666666666554333
No 177
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=80.89 E-value=98 Score=37.98 Aligned_cols=68 Identities=22% Similarity=0.253 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhhHHH----------HHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhh-hhH--hhHHHHHHHHHHhc
Q 003961 278 EITEMRKELNGKLSE----------LRRLQMELNRREDGDANDVVENLKRVVATLEKENN-SLK--MEKTELVAALEKNR 344 (783)
Q Consensus 278 ~~~~~~~el~ek~se----------i~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~-tlk--~~~~eL~a~L~~~r 344 (783)
-|+||++|.|..+|+ +--|+.|++.-...++ ...--|+.-++.|+.|-+ .|. +.|-+|..+|+.++
T Consensus 463 ~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~~~~-~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk 541 (762)
T PLN03229 463 MIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKANSQDQ-LMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLN 541 (762)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccccc-cccHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHH
Confidence 456777777776665 3334445555311110 011123333555555533 222 34667777777777
Q ss_pred cc
Q 003961 345 KS 346 (783)
Q Consensus 345 ~~ 346 (783)
..
T Consensus 542 ~~ 543 (762)
T PLN03229 542 EF 543 (762)
T ss_pred HH
Confidence 44
No 178
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=80.48 E-value=1.2e+02 Score=35.10 Aligned_cols=34 Identities=24% Similarity=0.229 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 003961 380 SLQKLEKDLKETCSERDKALQELTRLKQHLIEKA 413 (783)
Q Consensus 380 slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E 413 (783)
.+..++++|.+...+.....+++..|+..+-+.+
T Consensus 169 ~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe 202 (563)
T TIGR00634 169 AWLKARQQLKDRQQKEQELAQRLDFLQFQLEELE 202 (563)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666776666655554
No 179
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=80.32 E-value=5.9 Score=46.82 Aligned_cols=80 Identities=26% Similarity=0.404 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHH
Q 003961 310 DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLK 389 (783)
Q Consensus 310 ~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~ 389 (783)
..|+.|++.+..|+.++..++.++..|++.|.+++...-.+..-+ . --+.++.....|+++|.
T Consensus 429 ~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~------------r-----ei~~~~~~I~~L~~~L~ 491 (652)
T COG2433 429 ETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKD------------R-----EIRARDRRIERLEKELE 491 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------H-----HHHHHHHHHHHHHHHHH
Confidence 366777777777777777777777777777777773322111111 1 22345555666666666
Q ss_pred HhHHHHHHHHHHHHHHH
Q 003961 390 ETCSERDKALQELTRLK 406 (783)
Q Consensus 390 e~~~E~dKa~kEL~RLR 406 (783)
+....++.+..+|.+||
T Consensus 492 e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 492 EKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666666666666
No 180
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=80.24 E-value=84 Score=38.06 Aligned_cols=34 Identities=15% Similarity=0.310 Sum_probs=22.9
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 003961 508 IEAKGHLERELALAREESAKLSEYLKNADQRAEV 541 (783)
Q Consensus 508 ~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~ 541 (783)
++|......||...+..+..|...|+.++.+.+.
T Consensus 631 S~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 631 SEAEREFKKELERMKDQLQDLKASIEQLKKKLDY 664 (717)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777777777777777777776666543
No 181
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=80.01 E-value=1.6e+02 Score=36.29 Aligned_cols=108 Identities=25% Similarity=0.351 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHHHh
Q 003961 312 VENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKET 391 (783)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e~ 391 (783)
...|+..++.++.+...|++........|+..+. +-.+++..+..|+.+|.-+
T Consensus 591 ~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~---------------------------qL~E~E~~L~eLq~eL~~~ 643 (769)
T PF05911_consen 591 KKELEEELEKLESEKEELEMELASCQDQLESLKN---------------------------QLKESEQKLEELQSELESA 643 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555551 3456666677777766655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003961 392 CSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEE 457 (783)
Q Consensus 392 ~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qee 457 (783)
..-.-.+..+|...+...= .++- + ..++..+++.....|+.||..|-++++...+
T Consensus 644 keS~s~~E~ql~~~~e~~e--------~le~--~-~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e 698 (769)
T PF05911_consen 644 KESNSLAETQLKAMKESYE--------SLET--R-LKDLEAEAEELQSKISSLEEELEKERALSEE 698 (769)
T ss_pred HHHHHHHHHHHHHHHHHHH--------HHhh--h-hhHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 4444444444444433311 1111 1 1234446677777888888888777666554
No 182
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=79.81 E-value=24 Score=33.48 Aligned_cols=51 Identities=27% Similarity=0.290 Sum_probs=38.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcc
Q 003961 219 LAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLK 269 (783)
Q Consensus 219 ~aa~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk 269 (783)
+=...+.++.++..++.+|...+......|-+.+.|--+.-..-+.|..||
T Consensus 15 ~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr 65 (132)
T PF07926_consen 15 LKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLR 65 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 333556677889999999999999999999998888777766666555544
No 183
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=79.78 E-value=1.3e+02 Score=35.28 Aligned_cols=150 Identities=24% Similarity=0.317 Sum_probs=82.5
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhh--hHhhHHHHH
Q 003961 424 SKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNV--ELLNLQTAL 501 (783)
Q Consensus 424 ~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnv--El~NLQtAL 501 (783)
...|-+|.-.|-|+...|-.|+-. ..+|.-+ -.=|.++++-|++|-.+=-+.| |+-.++ -|.|||-||
T Consensus 330 q~~IqdLq~sN~yLe~kvkeLQ~k----~~kQqvf----vDiinkLk~niEeLIedKY~vi--LEKnd~~k~lqnLqe~l 399 (527)
T PF15066_consen 330 QNRIQDLQCSNLYLEKKVKELQMK----ITKQQVF----VDIINKLKENIEELIEDKYRVI--LEKNDIEKTLQNLQEAL 399 (527)
T ss_pred HHHHHHhhhccHHHHHHHHHHHHH----hhhhhHH----HHHHHHHHHHHHHHHHhHhHhh--hhhhhHHHHHHHHHHHH
Confidence 345778887888888887775532 2222211 1224566666666532222211 232222 578888888
Q ss_pred HHHHHHHH----HhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHH
Q 003961 502 GQYFAEIE----AKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKL 577 (783)
Q Consensus 502 gqfqAE~E----A~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kL 577 (783)
..-+.... .++.|.-++..++..-++|-+ +.-.-..+|+..+...-...+.|...-+.+.+|..--..|
T Consensus 400 a~tqk~LqEsr~eKetLqlelkK~k~nyv~LQE-------ry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~lkgel 472 (527)
T PF15066_consen 400 ANTQKHLQESRNEKETLQLELKKIKANYVHLQE-------RYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGEL 472 (527)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHH-------HHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 76654431 234555555555444444332 2222235555555554556666666555555555555555
Q ss_pred HHHHHHHHHHHhh
Q 003961 578 RLAVEQSMTRLNR 590 (783)
Q Consensus 578 R~ALeqsl~RL~~ 590 (783)
-+|...||.+|.+
T Consensus 473 Ekat~SALdlLkr 485 (527)
T PF15066_consen 473 EKATTSALDLLKR 485 (527)
T ss_pred HHHHHHHHHHHHH
Confidence 5788889999987
No 184
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=79.64 E-value=85 Score=32.96 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 003961 381 LQKLEKDLKETCSERDKALQELTRLKQHLIEKA 413 (783)
Q Consensus 381 lq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E 413 (783)
+.=|+..|++++.|...-..|+.-||..|-+..
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~ 44 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELR 44 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 446789999999999999999999999987664
No 185
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=79.63 E-value=1.2e+02 Score=36.94 Aligned_cols=45 Identities=18% Similarity=0.442 Sum_probs=34.2
Q ss_pred chHHHHHHhhcccCcccchhHHHHHHHHHhhhHHHHHHHHHHhcc
Q 003961 258 NESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNR 302 (783)
Q Consensus 258 n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~ 302 (783)
+..+||-|.-|.|||+-.-..++-|-....+.-..||.|.-=|..
T Consensus 106 ~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~ 150 (861)
T KOG1899|consen 106 YPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEE 150 (861)
T ss_pred chHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 566888888899998888888887777777777777777655444
No 186
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=79.42 E-value=76 Score=33.28 Aligned_cols=44 Identities=27% Similarity=0.421 Sum_probs=39.1
Q ss_pred HHHhhHHHHHhhhhhHHHhHHHHHhhhh-----hHhhHHHHHHHHHHHH
Q 003961 465 EIQKSKEIIDGLNNKLANCMRTIEAKNV-----ELLNLQTALGQYFAEI 508 (783)
Q Consensus 465 E~~~ske~iedL~~~L~~~mealeAKnv-----El~NLQtALgqfqAE~ 508 (783)
-.+.+++.-+.|+.++.-+|+-|+++.+ .|..+|+||..|+..-
T Consensus 177 ~~~~~k~rf~kLr~Dv~~Kl~LL~~~rv~~~~~qL~~~~~al~~y~~~~ 225 (229)
T PF06456_consen 177 NYQEAKERFDKLRSDVLVKLDLLDENRVNVMSHQLVLFQNALAAYFSGN 225 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577899999999999999999999976 8999999999999754
No 187
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=79.16 E-value=1.5e+02 Score=35.49 Aligned_cols=167 Identities=23% Similarity=0.237 Sum_probs=92.0
Q ss_pred chHHHHHHhhcc--cCcccch-hHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHH
Q 003961 258 NESFQDELKSLK--MDKDKTS-IEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKT 334 (783)
Q Consensus 258 n~~fqe~l~~lk--~~~~kts-~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~ 334 (783)
++.+|.+-..|| ++.-++| -++++|..|.++-.-++-+++-++.+... .+-.++..++.--++..++-..++
T Consensus 310 ~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k-----~vw~~~l~~~~~f~~le~~~~~~~ 384 (581)
T KOG0995|consen 310 IEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSK-----EVWELKLEIEDFFKELEKKFIDLN 384 (581)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554 3333433 46788888887777777777777766433 344455555555555555555566
Q ss_pred HHHHHHHHh--cccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 003961 335 ELVAALEKN--RKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEK 412 (783)
Q Consensus 335 eL~a~L~~~--r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~ 412 (783)
.|--+|... .++.+-.+.|. .-...-|-.+.-+.-.+-.|-+++++. ...+..++..|-.|.=.+
T Consensus 385 ~l~~~i~l~~~~~~~n~~~~pe----------~~~~~~~d~k~~V~~~l~el~~ei~~~---~~~~~~~~~tLq~~~~~~ 451 (581)
T KOG0995|consen 385 SLIRRIKLGIAENSKNLERNPE----------RAATNGVDLKSYVKPLLKELLDEISEE---LHEAENELETLQEHFSNK 451 (581)
T ss_pred HHHHHHHHHHHHHhccCCcCCc----------cCccccccchhHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 655555443 11111111111 111111224444554455554444443 666777777777776555
Q ss_pred hhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003961 413 AQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLA 453 (783)
Q Consensus 413 E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a 453 (783)
. -.|+|+++.+.+...++..++..+...+.
T Consensus 452 ~-----------~~i~E~~~~l~~~~~el~~~~~~~~~~k~ 481 (581)
T KOG0995|consen 452 A-----------STIEEKIQILGEIELELKKAESKYELKKE 481 (581)
T ss_pred H-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 35788888887777776666665554433
No 188
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=79.08 E-value=60 Score=34.27 Aligned_cols=81 Identities=20% Similarity=0.229 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhH
Q 003961 495 LNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDN 574 (783)
Q Consensus 495 ~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn 574 (783)
.|....|.+|+.|.+. +..|=..+.+.|....+.|.. .|.++. +++......+..++++.++.
T Consensus 28 e~ee~~L~e~~kE~~~----------L~~Er~~h~eeLrqI~~DIn~----lE~iIk---qa~~er~~~~~~i~r~~eey 90 (230)
T PF10146_consen 28 ENEEKCLEEYRKEMEE----------LLQERMAHVEELRQINQDINT----LENIIK---QAESERNKRQEKIQRLYEEY 90 (230)
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH----HHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 4566788899888865 444555556666666666644 112222 23444444445556666667
Q ss_pred HHHHHHHHHHHHH-Hhhcc
Q 003961 575 AKLRLAVEQSMTR-LNRMS 592 (783)
Q Consensus 575 ~kLR~ALeqsl~R-L~~ms 592 (783)
.+|+..++.-..- +.-..
T Consensus 91 ~~Lk~~in~~R~e~lgl~~ 109 (230)
T PF10146_consen 91 KPLKDEINELRKEYLGLEP 109 (230)
T ss_pred HHHHHHHHHHHHHHcCCCC
Confidence 7776666655544 44433
No 189
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=78.93 E-value=3.4 Score=44.50 Aligned_cols=86 Identities=23% Similarity=0.350 Sum_probs=56.5
Q ss_pred HHHHHhhcccCcccchhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcc--hHHHHHHHHHHHHHHhhhhhHhhHHHHHH
Q 003961 261 FQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDAN--DVVENLKRVVATLEKENNSLKMEKTELVA 338 (783)
Q Consensus 261 fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~--~~~~sLk~~~~~L~kEn~tlk~~~~eL~a 338 (783)
++++|+.|+-+......++.++.+|-.+=..||..|+.++..-+.++.. .....++..+..+.++...++.+|.-...
T Consensus 48 ~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~ 127 (314)
T PF04111_consen 48 LEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASN 127 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555555555555555555555555444333333 36677888999999999999999999999
Q ss_pred HHHHhccc
Q 003961 339 ALEKNRKS 346 (783)
Q Consensus 339 ~L~~~r~~ 346 (783)
.|+.+|++
T Consensus 128 ~L~~L~kt 135 (314)
T PF04111_consen 128 QLDRLRKT 135 (314)
T ss_dssp HHHCHHT-
T ss_pred HHHHHHhc
Confidence 99999965
No 190
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=78.30 E-value=96 Score=32.77 Aligned_cols=198 Identities=20% Similarity=0.225 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003961 379 QSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEF 458 (783)
Q Consensus 379 ~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeel 458 (783)
..+..|.+.+.-...+.++++--|.-+.+.|.+.+...+++ ++..++|+- .+...+..+..+|..|+.+...-++-
T Consensus 4 ~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~-er~~Kv~en---r~~kdEE~~e~~e~qLkEAk~iaE~a 79 (205)
T KOG1003|consen 4 ADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADES-ERGMKVIEN---RAQKLEEKMEAQEAQLKEAKHIAEKA 79 (205)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888888888899999999999999988877533322 233344442 33334445566666666654333321
Q ss_pred hhhchHHHHh---hHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 003961 459 KMMNHSEIQK---SKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNA 535 (783)
Q Consensus 459 k~~n~~E~~~---ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a 535 (783)
--..+.-..+ .....+..-.++.....-+..-..++.++.+-|++|-+--| -+...+-...+.+--|+..|++|
T Consensus 80 drK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee---~~~q~~d~~e~~ik~ltdKLkEa 156 (205)
T KOG1003|consen 80 DRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEE---KLEQKEEKYEEELKELTDKLKEA 156 (205)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHhhh
Confidence 0000000000 01111112122222222222334466777777777755432 23444444555666677777777
Q ss_pred hhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhh
Q 003961 536 DQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNR 590 (783)
Q Consensus 536 ~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ 590 (783)
+.+++-.-+ -.++ .++..-+|...+.-.......+...|++++.-|+.
T Consensus 157 E~rAE~aER----sVak---Leke~DdlE~kl~~~k~ky~~~~~eLD~~~~~L~~ 204 (205)
T KOG1003|consen 157 ETRAEFAER----RVAK---LEKERDDLEEKLEEAKEKYEEAKKELDETLQELEN 204 (205)
T ss_pred hhhHHHHHH----HHHH---HcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 777654211 1122 23333344333344445555666677777776654
No 191
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=77.65 E-value=99 Score=32.60 Aligned_cols=36 Identities=14% Similarity=0.218 Sum_probs=20.2
Q ss_pred HHHHHhcCCCHHHHHHhhhcccCCCCCcccccccCC
Q 003961 622 DLMVRMLGFSDEDKQRIGMAQQGAGKGVVRGVLGLP 657 (783)
Q Consensus 622 ~LMArMLgFSDEEK~riGL~~q~~g~G~~rgv~g~p 657 (783)
.++.++=.+.+++|..++-+..++...++++.+.+|
T Consensus 152 ~~i~~l~~l~~~~r~~l~~~~~~~~~~~i~ta~~l~ 187 (250)
T PRK14474 152 IFIARLEHLSEAERQALANSNTTPEMLRIRTSFELS 187 (250)
T ss_pred HHHHHhcccCHHHHHHHHhhhcCCCCeEEEeCCCCC
Confidence 344566678888888887552223334444444444
No 192
>COG5293 Predicted ATPase [General function prediction only]
Probab=77.61 E-value=56 Score=38.26 Aligned_cols=68 Identities=21% Similarity=0.262 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhh
Q 003961 433 NNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKG 512 (783)
Q Consensus 433 enE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~E 512 (783)
.-+|....|..++++||.- +..+.+|.+++++.++-+.. ..|++.|+-=.|-..
T Consensus 336 R~~yl~~ei~~i~~dLk~~------------------n~~~~~l~~~rae~l~~Lk~--------~g~~e~y~~l~ee~~ 389 (591)
T COG5293 336 RHDYLQEEIAEIEGDLKEV------------------NAELDDLGKRRAEGLAFLKN--------RGVFEKYQTLCEEII 389 (591)
T ss_pred HHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHh--------CCcHHHHHHHHHHHH
Confidence 4678899999999999854 45678899999999988887 347888887777666
Q ss_pred hhHHHHHHHHHHHH
Q 003961 513 HLERELALAREESA 526 (783)
Q Consensus 513 rLe~ELa~aree~a 526 (783)
+++.|||-++--+.
T Consensus 390 ~~~~elae~~~rie 403 (591)
T COG5293 390 ALRGELAELEYRIE 403 (591)
T ss_pred HHhhhHHHHHHhhh
Confidence 77777776655443
No 193
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=77.27 E-value=1.5e+02 Score=34.45 Aligned_cols=121 Identities=22% Similarity=0.344 Sum_probs=69.9
Q ss_pred chhHHHHHHHHHhhhHHHHHHHHHHhcc-------------cccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHH
Q 003961 275 TSIEITEMRKELNGKLSELRRLQMELNR-------------REDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALE 341 (783)
Q Consensus 275 ts~~~~~~~~el~ek~sei~rlq~~l~~-------------~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~ 341 (783)
|--+.+.+..+...|..++..|=.--++ ..-..++|++.-|...|..|+.+..-...+-..++.++.
T Consensus 243 ~Edq~~~LsE~~~k~~q~Le~~~~~~~~~~P~t~~~~~~~~e~~~~~sD~~~~L~k~vQ~L~AQle~~R~q~e~~q~~~~ 322 (593)
T KOG4807|consen 243 TEDQQNRLSEEIEKKWQELEKLPLRENKRVPLTALLNQSRGERRGPPSDGHEALEKEVQALRAQLEAWRLQGEAPQSALR 322 (593)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCccccCCCccccccCCCCcchHHHHHHHHHHHHHHHHHHHhccCchhhHh
Confidence 3344556666666666666554433222 222345689999999999988888888888777888887
Q ss_pred HhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHh
Q 003961 342 KNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQ---HLIEKA 413 (783)
Q Consensus 342 ~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRq---HLLe~E 413 (783)
+.+ ++-.|+.. +.+.+---+--.||.+-|+-..+|.-.| +.||.+||+ .||+.|
T Consensus 323 s~~----d~~~~~~~--------~~qatCERgfAaMEetHQkkiEdLQRqH------qRELekLreEKdrLLAEE 379 (593)
T KOG4807|consen 323 SQE----DGHIPPGY--------ISQATCERGFAAMEETHQKKIEDLQRQH------QRELEKLREEKDRLLAEE 379 (593)
T ss_pred hhh----hccCCccH--------HHHHHHHhhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhhhhh
Confidence 777 33333311 1122212244566666666555555443 235555543 345544
No 194
>PLN03188 kinesin-12 family protein; Provisional
Probab=76.92 E-value=2.4e+02 Score=36.71 Aligned_cols=63 Identities=25% Similarity=0.374 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHH
Q 003961 515 ERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAV 581 (783)
Q Consensus 515 e~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~AL 581 (783)
|.|-+..+.++..|-..|.+--.+ ++=.=+++-+|..+|--..-++.+...++++++++.+.+
T Consensus 1172 eker~~~~~enk~l~~qlrdtaea----v~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~ 1234 (1320)
T PLN03188 1172 EKERRYLRDENKSLQAQLRDTAEA----VQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQI 1234 (1320)
T ss_pred HHHHHHHHHhhHHHHHHHhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777766444332221 222223445555555555555555556666666666644
No 195
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=76.74 E-value=43 Score=33.97 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=32.5
Q ss_pred cchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhc
Q 003961 308 ANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 308 ~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (783)
++.....++..+..|+++...++..+.+|...|...+
T Consensus 60 ps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~ 96 (188)
T PF03962_consen 60 PSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAK 96 (188)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778899999999999999999999999999887
No 196
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=76.74 E-value=1.8e+02 Score=35.02 Aligned_cols=14 Identities=29% Similarity=0.301 Sum_probs=9.0
Q ss_pred chHHHHHHHHhcCC
Q 003961 617 SKEVLDLMVRMLGF 630 (783)
Q Consensus 617 sKEVL~LMArMLgF 630 (783)
..+++..+-+++|-
T Consensus 533 ~~~~~~~l~~~~~~ 546 (607)
T KOG0240|consen 533 ITELLSELRKDLGE 546 (607)
T ss_pred HHHHHHHHHhhhcc
Confidence 34777777777653
No 197
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=76.59 E-value=1.6e+02 Score=34.50 Aligned_cols=39 Identities=21% Similarity=0.378 Sum_probs=19.5
Q ss_pred HHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHH
Q 003961 466 IQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQY 504 (783)
Q Consensus 466 ~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqf 504 (783)
++.+....+||.+.|...-+.-+-.-||-.||-.-|.+-
T Consensus 254 Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea 292 (575)
T KOG4403|consen 254 LQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEA 292 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhh
Confidence 444445555665555543332233334556666666633
No 198
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=76.46 E-value=2.2e+02 Score=35.89 Aligned_cols=56 Identities=27% Similarity=0.271 Sum_probs=33.9
Q ss_pred HHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHH
Q 003961 285 ELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAAL 340 (783)
Q Consensus 285 el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L 340 (783)
+++.-.++|..||.+|.+.-..+-++.+.+|+-.+.+|+..+..+-.++.+-...+
T Consensus 331 ~~~~lK~ql~~l~~ell~~~~~~~~~ei~sl~~e~~~l~~~~d~~~~e~~e~~s~~ 386 (913)
T KOG0244|consen 331 EMLKLKAQLEPLQVELLSKAGDELDAEINSLPFENVTLEETLDALLQEKGEERSTL 386 (913)
T ss_pred HHHHHHHHHHHHHHHHHhhccccchhHHhhhhhhhhhhhhhHHHHhcchhhhhhhh
Confidence 33334456667777777665333445777777777777777766666555444333
No 199
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=76.13 E-value=1.6e+02 Score=34.33 Aligned_cols=84 Identities=26% Similarity=0.276 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhch--HHHHhhHHHHHhhhhhHHHh------HHHHHh----hhhhHhhHHHH
Q 003961 433 NNEYQRAQILHLENVLKQTLAKQEEFKMMNH--SEIQKSKEIIDGLNNKLANC------MRTIEA----KNVELLNLQTA 500 (783)
Q Consensus 433 enE~~R~~Is~lEraLK~~~a~qeelk~~n~--~E~~~ske~iedL~~~L~~~------mealeA----KnvEl~NLQtA 500 (783)
.+|++|...-+||-.|.++ ||-+ .|. -.|++++.+..-|..||-.- ++.|.- ---+-.|+-.-
T Consensus 180 ~leQLRre~V~lentlEQE---qEal--vN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~h 254 (552)
T KOG2129|consen 180 TLEQLRREAVQLENTLEQE---QEAL--VNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLH 254 (552)
T ss_pred hHHHHHHHHHHHhhHHHHH---HHHH--HHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHH
Confidence 3588888888888887765 2222 222 35677777777777777431 332220 01133455544
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHH
Q 003961 501 LGQYFAEIEAKGHLERELALAREE 524 (783)
Q Consensus 501 LgqfqAE~EA~ErLe~ELa~aree 524 (783)
..-.++|+ +||...+++|+..
T Consensus 255 i~~l~~Ev---eRlrt~l~~Aqk~ 275 (552)
T KOG2129|consen 255 IDKLQAEV---ERLRTYLSRAQKS 275 (552)
T ss_pred HHHHHHHH---HHHHHHHHHHHHH
Confidence 44456666 4566666665544
No 200
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=76.07 E-value=87 Score=31.12 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=15.5
Q ss_pred chHHHHhhHHHHHhhhhhHHHhH
Q 003961 462 NHSEIQKSKEIIDGLNNKLANCM 484 (783)
Q Consensus 462 n~~E~~~ske~iedL~~~L~~~m 484 (783)
.+.++..++.+|+.+|.++.-|+
T Consensus 136 i~~ei~~lr~~iE~~K~~~lr~~ 158 (177)
T PF07798_consen 136 IDTEIANLRTEIESLKWDTLRWL 158 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777776654
No 201
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=75.89 E-value=1.4e+02 Score=33.41 Aligned_cols=72 Identities=26% Similarity=0.253 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003961 378 EQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLK 449 (783)
Q Consensus 378 e~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK 449 (783)
++.+..+...+...+..+..+.+-|..+++++-.....+.....-.+.+|..||+.....+.+|..+-..++
T Consensus 238 ~~~~~~ln~ql~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~s~~i~~Lr~~~~~~~~~~~~l~~~~~ 309 (458)
T COG3206 238 EQQLSALNTQLQSARARLAQAEARLASLLQLLPLGREAAALREVLESPTIQDLRQQYAQVRQQIADLSTELG 309 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHhccHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455667778888888889999999999999877666545555566667888888876666666666555544
No 202
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=75.82 E-value=52 Score=36.06 Aligned_cols=137 Identities=23% Similarity=0.322 Sum_probs=78.4
Q ss_pred HHhhHHhhhchhHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCcccchhHHHHHHHHH
Q 003961 207 ELADLLEEKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKEL 286 (783)
Q Consensus 207 e~~d~le~~~~~~aa~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el 286 (783)
+|++ ||+|-+----.-|++.|+--.|--+.+--.+++.+++-.|-+=++-++--.-+|.-+|-..+.+.-++..++.+|
T Consensus 85 ~l~e-vEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L 163 (302)
T PF09738_consen 85 SLAE-VEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQL 163 (302)
T ss_pred HHHH-HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555 355555444456777776655555555555555555444333333222334467777777777777777777777
Q ss_pred hhhHHHHHHHHHHhcc-cccCCcch----------------HHHHHHHH--------HHHHHHhhhhhHhhHHHHHHHHH
Q 003961 287 NGKLSELRRLQMELNR-REDGDAND----------------VVENLKRV--------VATLEKENNSLKMEKTELVAALE 341 (783)
Q Consensus 287 ~ek~sei~rlq~~l~~-~e~e~~~~----------------~~~sLk~~--------~~~L~kEn~tlk~~~~eL~a~L~ 341 (783)
.+.-.-|..-=+-|.. -.+.+.++ ...-|... +..|-.|+..|-.++..|...|+
T Consensus 164 ~~rdeli~khGlVlv~~~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~aG~g~LDvRLkKl~~eke~L~~qv~klk~qLe 243 (302)
T PF09738_consen 164 KQRDELIEKHGLVLVPDATNGDTSDEPNNVGHPKRALVSQEAAQLLESAGDGSLDVRLKKLADEKEELLEQVRKLKLQLE 243 (302)
T ss_pred HHHHHHHHHCCeeeCCCCCCCccccCccccCCCcccccchhhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555544433233333 22222222 12233333 77777899999999999999997
Q ss_pred Hhc
Q 003961 342 KNR 344 (783)
Q Consensus 342 ~~r 344 (783)
.-+
T Consensus 244 e~~ 246 (302)
T PF09738_consen 244 ERQ 246 (302)
T ss_pred HHH
Confidence 655
No 203
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=75.79 E-value=1e+02 Score=32.49 Aligned_cols=34 Identities=29% Similarity=0.381 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003961 375 EEMEQSLQKLEKDLKETCSERDKALQELTRLKQH 408 (783)
Q Consensus 375 Eeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqH 408 (783)
|.++...+.|..-|.....+..++..+|.+--..
T Consensus 1 E~aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~ 34 (246)
T PF00769_consen 1 EEAEREKQELEERLRQMEEEMRRAQEALEESEET 34 (246)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666667766677777666554433
No 204
>PRK12705 hypothetical protein; Provisional
Probab=75.30 E-value=1.7e+02 Score=34.27 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHhh
Q 003961 576 KLRLAVEQSMTRLNR 590 (783)
Q Consensus 576 kLR~ALeqsl~RL~~ 590 (783)
+.|.-+..||+|+..
T Consensus 177 ~A~~ii~~aiqr~a~ 191 (508)
T PRK12705 177 KAQNILAQAMQRIAS 191 (508)
T ss_pred HHHHHHHHHHHHhcc
Confidence 456778888888754
No 205
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=74.63 E-value=59 Score=36.28 Aligned_cols=108 Identities=19% Similarity=0.268 Sum_probs=62.2
Q ss_pred HHHHhhhhhHHHhHHHHHhhhhhHhh-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHH
Q 003961 471 EIIDGLNNKLANCMRTIEAKNVELLN-LQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEI 549 (783)
Q Consensus 471 e~iedL~~~L~~~mealeAKnvEl~N-LQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei 549 (783)
.....|-+..+-.++.|+++..-|+| |-+-+.+|.+-..---.+.....++...+.+-++.|.+.-..+|..+.|-|+-
T Consensus 248 ~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~ 327 (384)
T KOG0972|consen 248 PYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQ 327 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555566777776555544 33345556544322222233333444456777778888777778777776554
Q ss_pred HHhhhHHHHHHHhhhhhhhhhHHhHHHHHH
Q 003961 550 LVKLSHSEKMLAEGKGRANKLEEDNAKLRL 579 (783)
Q Consensus 550 ~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ 579 (783)
=.+.+.=. -+..+|..+.||++|...+.-
T Consensus 328 G~~msDGa-plvkIkqavsKLk~et~~mnv 356 (384)
T KOG0972|consen 328 GAKMSDGA-PLVKIKQAVSKLKEETQTMNV 356 (384)
T ss_pred cccccCCc-hHHHHHHHHHHHHHHHHhhhh
Confidence 44443221 244566778888888888764
No 206
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=74.52 E-value=1.9e+02 Score=34.33 Aligned_cols=132 Identities=23% Similarity=0.170 Sum_probs=65.1
Q ss_pred HHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhh-hHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 003961 454 KQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNV-ELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYL 532 (783)
Q Consensus 454 ~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnv-El~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~L 532 (783)
++++-+..-+.|+.+|.++|.+++..+.-.+-.-++|=- .+.-=-.||+.+---+|+. ||..|- .+++++...=+.|
T Consensus 157 ~qe~~~~k~d~E~arm~aqi~~l~eEmS~r~l~reakl~~~lqk~f~alEk~mka~e~~-rl~~E~-~lreElE~rW~~l 234 (531)
T PF15450_consen 157 SQEEDSQKVDNEVARMQAQITKLGEEMSLRFLKREAKLCSFLQKSFLALEKRMKAQESS-RLRTER-SLREELESRWQKL 234 (531)
T ss_pred cchhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHH
Confidence 455555666789999999999887766555444444311 1111123788887777665 222222 1233443221111
Q ss_pred -HHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhh
Q 003961 533 -KNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNR 590 (783)
Q Consensus 533 -k~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ 590 (783)
.-...++.+.....+.+++- .+..-...+..|.|+-+-.+.|-+++.+.=..|++
T Consensus 235 q~l~Ee~l~al~gq~ev~~~~---~~~E~~~l~eq~~~ld~AV~~Ltk~v~~~q~sL~k 290 (531)
T PF15450_consen 235 QELTEERLRALQGQQEVGLGG---IQSEESKLLEQCRKLDEAVAQLTKFVQQNQKSLNK 290 (531)
T ss_pred HHHHHHHHHHHHhhHhhhhhh---hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 11112222222222222222 22222333446777777777777776665555544
No 207
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=74.13 E-value=1.4e+02 Score=32.71 Aligned_cols=102 Identities=14% Similarity=0.241 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCcccchhHHHHHHHHHhhhHHHHHHHHHHhccccc
Q 003961 226 YESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRRED 305 (783)
Q Consensus 226 ~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~ 305 (783)
+++=.++|+.-.++-|..+..+.-..-.++=- .|+|=... + ..++.-++.+.-=+|.- +|-+.
T Consensus 68 Y~~sC~EL~~~I~egr~~~~~~E~et~~~nPp--LF~EY~~a---~--------~d~r~lm~~Qf~lvK~~----aRl~a 130 (312)
T smart00787 68 YQFSCKELKKYISEGRDLFKEIEEETLINNPP--LFKEYFSA---S--------PDVKLLMDKQFQLVKTF----ARLEA 130 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH--HHHHHHcC---C--------HHHHHHHHHHHHHHHHH----HHHHH
Confidence 45566777777777777666655444333322 67665432 2 33444444444333321 11111
Q ss_pred CCcc-h-HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhc
Q 003961 306 GDAN-D-VVENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 306 e~~~-~-~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (783)
...= + -++.++.+...|......|+..+..|...++..-
T Consensus 131 k~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~ 171 (312)
T smart00787 131 KKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLN 171 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 2 4455666666666666666666666665555443
No 208
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=74.04 E-value=1.2e+02 Score=31.80 Aligned_cols=139 Identities=19% Similarity=0.215 Sum_probs=70.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHH
Q 003961 388 LKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQ 467 (783)
Q Consensus 388 L~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~ 467 (783)
+.++..-.-|+.-|-..|+..+..++ +...+.-+ ++...+.++-.+..++-.+.+
T Consensus 10 v~dL~~~n~~L~~en~kL~~~ve~~e-e~na~L~~----------e~~~L~~q~~s~Qqal~~aK~-------------- 64 (193)
T PF14662_consen 10 VEDLQLNNQKLADENAKLQRSVETAE-EGNAQLAE----------EITDLRKQLKSLQQALQKAKA-------------- 64 (193)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH--------------
Confidence 34444446667777777877755444 23333333 233344455555555555533
Q ss_pred hhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHH
Q 003961 468 KSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKE 547 (783)
Q Consensus 468 ~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKe 547 (783)
++++++|||.-+. .++. .|=+-.=..++.|.|. -+|..++..+++++.+|.....--+.++..+..++.
T Consensus 65 -l~eEledLk~~~~----~lEE-----~~~~L~aq~rqlEkE~-q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~ 133 (193)
T PF14662_consen 65 -LEEELEDLKTLAK----SLEE-----ENRSLLAQARQLEKEQ-QSLVAEIETLQEENGKLLAERDGLKKRSKELATEKA 133 (193)
T ss_pred -HHHHHHHHHHHHH----HHHH-----HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhH
Confidence 2344444432211 1122 2222222345555554 377888888888887777666666666555544554
Q ss_pred HHHHhhhHHHHHHHh
Q 003961 548 EILVKLSHSEKMLAE 562 (783)
Q Consensus 548 ei~~KLs~~E~~l~e 562 (783)
.+-.++-+++..+..
T Consensus 134 ~Lq~Ql~~~e~l~~~ 148 (193)
T PF14662_consen 134 TLQRQLCEFESLICQ 148 (193)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444333
No 209
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=73.94 E-value=1.5e+02 Score=32.77 Aligned_cols=63 Identities=25% Similarity=0.307 Sum_probs=37.8
Q ss_pred cchhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhc
Q 003961 274 KTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 274 kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (783)
+.--....++.||+|=-.--|.+..+|-. -+.++++.+..|+.+|+.|+++.-.+..+++-.+
T Consensus 24 ~ykq~f~~~reEl~EFQegSrE~Eaeles--------qL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~ 86 (333)
T KOG1853|consen 24 EYKQHFLQMREELNEFQEGSREIEAELES--------QLDQLETRNRDLETRNQRLTTEQERNKEKQEDQR 86 (333)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445566666544433444444422 3567777777788888888877777766666655
No 210
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=73.83 E-value=62 Score=35.69 Aligned_cols=89 Identities=28% Similarity=0.424 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003961 380 SLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFK 459 (783)
Q Consensus 380 slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk 459 (783)
.+--|+.-|+|+....---..|+..||..|--|.+ || ||| ||-+.++|+ |||.++-
T Consensus 69 ~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrE------DW----IEE---ECHRVEAQL-----ALKEARk------ 124 (305)
T PF15290_consen 69 CIRHLKAKLKESENRLHDRETEIDELKSQLARMRE------DW----IEE---ECHRVEAQL-----ALKEARK------ 124 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH------HH----HHH---HHHHHHHHH-----HHHHHHH------
Confidence 45568888999877777778899999999888763 34 555 676667655 5666532
Q ss_pred hhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHh
Q 003961 460 MMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAK 511 (783)
Q Consensus 460 ~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ 511 (783)
||+.+|.-||-.+..|+.+. .-+..||-++-++
T Consensus 125 -----EIkQLkQvieTmrssL~ekD--------------kGiQKYFvDINiQ 157 (305)
T PF15290_consen 125 -----EIKQLKQVIETMRSSLAEKD--------------KGIQKYFVDINIQ 157 (305)
T ss_pred -----HHHHHHHHHHHHHhhhchhh--------------hhHHHHHhhhhhh
Confidence 46666776666666665553 3456799999653
No 211
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=73.80 E-value=1.1e+02 Score=31.34 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=25.3
Q ss_pred HHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhhccCCcchhhhHHH
Q 003961 556 SEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRMSVDSDFLVDRRI 603 (783)
Q Consensus 556 ~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ms~dsD~~VDRRI 603 (783)
.+.....+..++.+++.+-..|...++.++..+...+.-..-.+-|+|
T Consensus 105 Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl 152 (201)
T PF13851_consen 105 LKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKL 152 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444456666666666666666666665554444444444443
No 212
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=73.80 E-value=93 Score=30.42 Aligned_cols=60 Identities=22% Similarity=0.297 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003961 381 LQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQT 451 (783)
Q Consensus 381 lq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~ 451 (783)
|+.|+.+...+..-.+.+...+..|-+.+..++. .|..|...+.....+|..++..|...
T Consensus 2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~-----------EI~sL~~K~~~lE~eld~~~~~l~~~ 61 (143)
T PF12718_consen 2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQ-----------EITSLQKKNQQLEEELDKLEEQLKEA 61 (143)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555566655555555531 23444444444444455544444443
No 213
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=73.03 E-value=26 Score=36.93 Aligned_cols=58 Identities=21% Similarity=0.221 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHH
Q 003961 525 SAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVE 582 (783)
Q Consensus 525 ~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALe 582 (783)
++++.+.++..+..++...++.+....+.-...+...+...++..|-+|+++|+..++
T Consensus 153 ~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 153 NDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 3333333333333334333333333444444555566666778999999999998774
No 214
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=72.88 E-value=1e+02 Score=30.37 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=15.6
Q ss_pred HhhhhhhhhhHHhHHHHHHHHHHHHHHH
Q 003961 561 AEGKGRANKLEEDNAKLRLAVEQSMTRL 588 (783)
Q Consensus 561 ~e~K~~~~KL~eDn~kLR~ALeqsl~RL 588 (783)
...+..+..++..+..|++.++.+-.++
T Consensus 148 ~~~~~~~~~l~~~i~~l~rk~~~l~~~i 175 (177)
T PF13870_consen 148 DKTKEEVEELRKEIKELERKVEILEMRI 175 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334455556666666666665555444
No 215
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=72.33 E-value=28 Score=33.89 Aligned_cols=66 Identities=24% Similarity=0.398 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHH
Q 003961 310 DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLK 389 (783)
Q Consensus 310 ~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~ 389 (783)
+-+..+...|..|+++...|+.+.+.|.+.|..++++ |..++|...+..|+.+
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~-------------------------~t~~el~~~i~~l~~e-- 124 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSE-------------------------PTNEELREEIEELEEE-- 124 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------------------CCHHHHHHHHHHHHHH--
Confidence 4678888889999999999999999999999999843 4566766555554444
Q ss_pred HhHHHHHHHHHHHHHHHH
Q 003961 390 ETCSERDKALQELTRLKQ 407 (783)
Q Consensus 390 e~~~E~dKa~kEL~RLRq 407 (783)
...+..-|..||.
T Consensus 125 -----~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 125 -----IEELEEKLEKLRS 137 (169)
T ss_pred -----HHHHHHHHHHHHh
Confidence 3444555555655
No 216
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=72.30 E-value=2.7e+02 Score=35.13 Aligned_cols=129 Identities=16% Similarity=0.176 Sum_probs=77.3
Q ss_pred cccCcccchhHHHHHHHHHhhhHHHHHH------------HHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHH
Q 003961 268 LKMDKDKTSIEITEMRKELNGKLSELRR------------LQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTE 335 (783)
Q Consensus 268 lk~~~~kts~~~~~~~~el~ek~sei~r------------lq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~e 335 (783)
++-++.-.--...++|-|..+++...+. +.+++--|...+....+--++..++.+.|++...-.++.+
T Consensus 948 akqn~eis~Ed~kkLhaE~daeLe~~~ael~eleqk~le~~eDea~aRh~kefE~~mrdhrselEe~kKe~eaiineiee 1027 (1424)
T KOG4572|consen 948 AKQNDEISEEDKKKLHAEIDAELEKEFAELIELEQKALECKEDEAFARHEKEFEIEMRDHRSELEEKKKELEAIINEIEE 1027 (1424)
T ss_pred HhhcCcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Confidence 3334444444556777777777654332 2233333333334445666788899999999999999999
Q ss_pred HHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 003961 336 LVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKA 413 (783)
Q Consensus 336 L~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E 413 (783)
|++.+-+|+-- .+..|- -+..|.+. | .-.++-.++ +++++.++-|-.++++|-+|.++++-
T Consensus 1028 ~eaeIiQekE~---el~e~e----fka~d~Sd----~-r~kie~efA-----a~eaemdeik~~~~edrakqkei~k~ 1088 (1424)
T KOG4572|consen 1028 LEAEIIQEKEG---ELIEDE----FKALDESD----P-RAKIEDEFA-----AIEAEMDEIKDGKCEDRAKQKEIDKI 1088 (1424)
T ss_pred HHHHHHhcccc---hHHHHH----hhhccccC----c-chhHHHHHH-----HHHhhhhhhhhhhhhhHHHHHHHHHH
Confidence 99999998821 121110 01111111 1 113333344 66777777788899999999988874
No 217
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=71.97 E-value=98 Score=29.88 Aligned_cols=34 Identities=35% Similarity=0.362 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhc
Q 003961 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (783)
.|+.|...|..++-|...|+.++..|.+.=..++
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~ 50 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELR 50 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777777777766665544444
No 218
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=71.88 E-value=1.2e+02 Score=30.88 Aligned_cols=11 Identities=0% Similarity=0.268 Sum_probs=5.3
Q ss_pred HHHHHHHhcCC
Q 003961 620 VLDLMVRMLGF 630 (783)
Q Consensus 620 VL~LMArMLgF 630 (783)
++..++.|+..
T Consensus 149 l~~~l~~ifpI 159 (302)
T PF10186_consen 149 LIQELSEIFPI 159 (302)
T ss_pred HHHHHHHHhCc
Confidence 44444555544
No 219
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=71.88 E-value=41 Score=40.25 Aligned_cols=52 Identities=21% Similarity=0.314 Sum_probs=36.5
Q ss_pred hhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhh
Q 003961 492 VELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSR 543 (783)
Q Consensus 492 vEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~ 543 (783)
.++.+|-+=|.+|..+.+-+.+..+|+++....+..|...|.+.+..++.++
T Consensus 450 ~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~ 501 (652)
T COG2433 450 REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELE 501 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777777777777776666666655443
No 220
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=71.55 E-value=10 Score=35.51 Aligned_cols=80 Identities=23% Similarity=0.242 Sum_probs=64.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHH
Q 003961 503 QYFAEIEAKGHLERELALAREESAKLSEYL-KNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAV 581 (783)
Q Consensus 503 qfqAE~EA~ErLe~ELa~aree~a~Ls~~L-k~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~AL 581 (783)
.+..+.+..+.++.+...+..++..|++.| -+|+.-+...++|...+-.|..+.+..+.+....+..+......|+..+
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~ 81 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVM 81 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667778888889999999999888 8888888888888888888888999999998888887777777776654
Q ss_pred H
Q 003961 582 E 582 (783)
Q Consensus 582 e 582 (783)
.
T Consensus 82 ~ 82 (100)
T PF06428_consen 82 E 82 (100)
T ss_dssp T
T ss_pred H
Confidence 3
No 221
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=71.13 E-value=2.3e+02 Score=33.84 Aligned_cols=34 Identities=35% Similarity=0.512 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 003961 380 SLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQ 414 (783)
Q Consensus 380 slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~ 414 (783)
++..+..++.+...+..+..+++. ++..++++-.
T Consensus 357 ~~~q~~~e~~~~~~~~~~le~~~~-l~~k~~~lL~ 390 (594)
T PF05667_consen 357 SLKQLEEELEEKEAENEELEEELK-LKKKTVELLP 390 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhc
Confidence 344555566666666777777776 5555566543
No 222
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=70.40 E-value=56 Score=32.76 Aligned_cols=25 Identities=28% Similarity=0.210 Sum_probs=14.1
Q ss_pred HHHHHhhhhhhhhhHHhHHHHHHHH
Q 003961 557 EKMLAEGKGRANKLEEDNAKLRLAV 581 (783)
Q Consensus 557 E~~l~e~K~~~~KL~eDn~kLR~AL 581 (783)
...++-+...+.+|+.||..|-.-+
T Consensus 157 ~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 157 QLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444456666777777665433
No 223
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=69.95 E-value=1.1e+02 Score=29.40 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=18.6
Q ss_pred hhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHH
Q 003961 544 SEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAV 581 (783)
Q Consensus 544 kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~AL 581 (783)
.+|+++..--..++..-.....++-|-+-++.+|+..|
T Consensus 112 ~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 112 QEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444433223344444444455555566666666655
No 224
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=69.79 E-value=23 Score=34.54 Aligned_cols=71 Identities=21% Similarity=0.280 Sum_probs=40.8
Q ss_pred hhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 003961 459 KMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQ 537 (783)
Q Consensus 459 k~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q 537 (783)
......++..+..+|.+|..+|..--..+.....||.+|.+.+-- +-|...+..+.+++..+...|.....
T Consensus 67 ~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~--------~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 67 EVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTN--------EELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334456777777777777777766655566655666666665521 11234444455555555555555444
No 225
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=69.43 E-value=1.2e+02 Score=30.04 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=16.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 003961 428 EELRENNEYQRAQILHLENVLKQTLAK 454 (783)
Q Consensus 428 eELreenE~~R~~Is~lEraLK~~~a~ 454 (783)
..++.+++..+.+|..++..|+..+.+
T Consensus 76 ~~lr~~~e~L~~eie~l~~~L~~ei~~ 102 (177)
T PF07798_consen 76 AELRSENEKLQREIEKLRQELREEINK 102 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666655443
No 226
>PRK10698 phage shock protein PspA; Provisional
Probab=69.32 E-value=1.5e+02 Score=30.87 Aligned_cols=113 Identities=12% Similarity=0.237 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHH
Q 003961 437 QRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLER 516 (783)
Q Consensus 437 ~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ 516 (783)
++.++..+.+++...++.+..+ ...+......|.++..+.. -+|.+-+..|+ ..||.....-.+....|+.
T Consensus 36 m~~~l~~~r~alA~~~A~~k~~----er~~~~~~~~~~~~e~kA~---~Al~~G~EdLA--r~AL~~K~~~~~~~~~l~~ 106 (222)
T PRK10698 36 MEDTLVEVRSTSARALAEKKQL----TRRIEQAEAQQVEWQEKAE---LALRKEKEDLA--RAALIEKQKLTDLIATLEH 106 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH---HHHHCCCHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 3555566666777776654432 3344444555555544432 34455455544 3456666555555667788
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHH
Q 003961 517 ELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEK 558 (783)
Q Consensus 517 ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~ 558 (783)
++......+.+|...|..-+..+...+..+..++++...++.
T Consensus 107 ~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a 148 (222)
T PRK10698 107 EVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASS 148 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888778888877777777777777667777666544433
No 227
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=68.72 E-value=1.6e+02 Score=30.97 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003961 376 EMEQSLQKLEKDLKETCSERDKALQELTRLKQH 408 (783)
Q Consensus 376 eme~slq~L~~eL~e~~~E~dKa~kEL~RLRqH 408 (783)
.+|..-+.|..++..++.|..|..-|..-|+..
T Consensus 92 qlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~ 124 (193)
T PF14662_consen 92 QLEKEQQSLVAEIETLQEENGKLLAERDGLKKR 124 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHH
Confidence 344444455555555555555555555444433
No 228
>PRK14011 prefoldin subunit alpha; Provisional
Probab=68.35 E-value=1.1e+02 Score=30.21 Aligned_cols=33 Identities=30% Similarity=0.291 Sum_probs=22.5
Q ss_pred hhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 003961 491 NVELLNLQTALGQYFAEIEAKGHLERELALAREESA 526 (783)
Q Consensus 491 nvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a 526 (783)
|.||.+++.+|.+|+++.+. |...+..++.-..
T Consensus 2 ~~elq~~~~~l~~~~~qie~---L~~si~~L~~a~~ 34 (144)
T PRK14011 2 NEELQNQFMALEVYNQQVQK---LQEELSSIDMMKM 34 (144)
T ss_pred cHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 67888899999999998854 4554444444333
No 229
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=68.30 E-value=1.6e+02 Score=30.97 Aligned_cols=89 Identities=25% Similarity=0.291 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhh----hh
Q 003961 439 AQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKG----HL 514 (783)
Q Consensus 439 ~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~E----rL 514 (783)
..|+=|..-||.+-+ ++- .-..||--++.++.+++ ..+..++..+..|+.++..=..|.|.-+ +.
T Consensus 10 GEIsLLKqQLke~q~---E~~-~K~~Eiv~Lr~ql~e~~-------~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~ 78 (202)
T PF06818_consen 10 GEISLLKQQLKESQA---EVN-QKDSEIVSLRAQLRELR-------AELRNKESQIQELQDSLRTKQLELEVCENELQRK 78 (202)
T ss_pred hhHHHHHHHHHHHHH---HHH-HHHhHHHHHHHHHHHHH-------HHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHH
Confidence 357777777776522 221 12355655555555554 3445556666777776666555555431 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhH
Q 003961 515 ERELALAREESAKLSEYLKNADQR 538 (783)
Q Consensus 515 e~ELa~aree~a~Ls~~Lk~a~q~ 538 (783)
..|....++++..|.+.+..-+..
T Consensus 79 ~~Ea~lLrekl~~le~El~~Lr~~ 102 (202)
T PF06818_consen 79 KNEAELLREKLGQLEAELAELREE 102 (202)
T ss_pred hCHHHHhhhhhhhhHHHHHHHHHH
Confidence 444455556666655544444443
No 230
>PF13166 AAA_13: AAA domain
Probab=68.21 E-value=2.4e+02 Score=32.88 Aligned_cols=191 Identities=26% Similarity=0.289 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHh--cccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccC
Q 003961 276 SIEITEMRKELNGKLSELRRLQMEL--NRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFP 353 (783)
Q Consensus 276 s~~~~~~~~el~ek~sei~rlq~~l--~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~ 353 (783)
+.+..+...+|...+..+......+ .-..-.........+......+......+...+..+..+|..-.+.....+..
T Consensus 279 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~L~~K~~~~~~~~~~ 358 (712)
T PF13166_consen 279 DEEYEKLIEELEKAIKKLEKAIENIIEQLESILSENDFYEEFEEDKEELKSAIEALKEELEELKKALEKKIKNPSSPIEL 358 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q ss_pred CCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHh
Q 003961 354 DASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELREN 433 (783)
Q Consensus 354 da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELree 433 (783)
+ .+.. .-..+...++.+...+.+.....+...+++..++..+-... -.+...+ |+.+..+
T Consensus 359 ~---------~~~~-----~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---i~~~~~~ 418 (712)
T PF13166_consen 359 E---------EINE-----DIDELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWLHL---IAKLKED---IEEYQKE 418 (712)
T ss_pred c---------chhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH---HHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhH
Q 003961 434 NEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNL 497 (783)
Q Consensus 434 nE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NL 497 (783)
.......|..++.+++.. ..++...+..|..|..++.+--.+++.-|.+|.+|
T Consensus 419 ~~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 419 IKELEKEINSLEKKLKKA-----------KEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
No 231
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=67.88 E-value=2.8e+02 Score=34.46 Aligned_cols=45 Identities=13% Similarity=0.206 Sum_probs=26.9
Q ss_pred hcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhc
Q 003961 300 LNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 300 l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (783)
+..+..++...-+.-+-.-..+...|+.+.-.--.+|+++|..-+
T Consensus 60 e~~aqk~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankd 104 (916)
T KOG0249|consen 60 EAMAQKEDMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKD 104 (916)
T ss_pred hHHhhhcccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcc
Confidence 344445555544555555666777777776666667777766544
No 232
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=67.81 E-value=2.6e+02 Score=33.21 Aligned_cols=240 Identities=17% Similarity=0.252 Sum_probs=122.8
Q ss_pred HHhhhchhHHHHHHHhHHHHHHHH--HHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCcccchhHHHHHHHHHhh
Q 003961 211 LLEEKNRSLAAERAAYESQTRQLR--MELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNG 288 (783)
Q Consensus 211 ~le~~~~~~aa~qa~~~~~i~~l~--~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~e 288 (783)
..-+-+.-.|+.+-+.++=+.+.. +++++-+.-+.+--+-|+. ----|+--.+-||=-..+-.--|++|..|.-+
T Consensus 265 ~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~---D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~ 341 (622)
T COG5185 265 FVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKS---DSNKYENYVNAMKQKSQEWPGKLEKLKSEIEL 341 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 333445667777777665444432 2444444444433333432 12235666677777777777888999999999
Q ss_pred hHHHHHHHHHHhccc--ccCCcchHHHHHHHHH---HHHHHhhhhhHhhHHH----------------------------
Q 003961 289 KLSELRRLQMELNRR--EDGDANDVVENLKRVV---ATLEKENNSLKMEKTE---------------------------- 335 (783)
Q Consensus 289 k~sei~rlq~~l~~~--e~e~~~~~~~sLk~~~---~~L~kEn~tlk~~~~e---------------------------- 335 (783)
|.+||+-||....+- .-..++.+.+.++-|+ +.|-+|.+-...++.+
T Consensus 342 kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~s 421 (622)
T COG5185 342 KEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDS 421 (622)
T ss_pred HHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888654321 1112222333333222 2222222222222222
Q ss_pred HHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 003961 336 LVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQE 415 (783)
Q Consensus 336 L~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~E 415 (783)
|--.|+..| ..+.-+.-+. .. .+..-++||..-.|.-+.-.+..+|-..-.++ +.-+..
T Consensus 422 l~~~i~~~~----~~i~~~~nd~-~l--~iN~E~~~~~~sg~~~~I~~~i~eln~~i~~~--------------~~~e~n 480 (622)
T COG5185 422 LIQNITRSR----SQIGHNVNDS-SL--KINIEQLFPKGSGINESIKKSILELNDEIQER--------------IKTEEN 480 (622)
T ss_pred HHHHhcccH----HHHhhcCCCC-ce--eeccccCCccccCchHhHHHHHHHHhHHHHHH--------------HHHHhc
Confidence 222222222 1122221111 11 24445568888888777766666554332221 111111
Q ss_pred hh----hhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHH
Q 003961 416 ES----EKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLA 481 (783)
Q Consensus 416 e~----ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~ 481 (783)
.+ ++.++-.-+|.||.+.+++....++. +....+..|..+++|..+.+.+|+.|.++|.
T Consensus 481 ksi~Lee~i~~~~~~i~El~~~l~~~e~~L~~-------a~s~~~~~ke~~e~e~~a~~~E~eklE~el~ 543 (622)
T COG5185 481 KSITLEEDIKNLKHDINELTQILEKLELELSE-------ANSKFELSKEENERELVAQRIEIEKLEKELN 543 (622)
T ss_pred cceeHHHHhhhHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 11 23344445688888888777664443 3334455566677777777777777765554
No 233
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=67.72 E-value=3.2e+02 Score=34.05 Aligned_cols=69 Identities=26% Similarity=0.308 Sum_probs=47.8
Q ss_pred hhhc-hHHHHhhHHHHHhhhhhHHHh-----HHHHHhh---hhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 003961 459 KMMN-HSEIQKSKEIIDGLNNKLANC-----MRTIEAK---NVELLNLQTALGQYFAEIEAKGHLERELALAREESAK 527 (783)
Q Consensus 459 k~~n-~~E~~~ske~iedL~~~L~~~-----mealeAK---nvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~ 527 (783)
.+.+ ...++++.++++++++.|.-. |+.--++ ++.=.=||-+|+.-.+..|-+++|.++++.++.-+..
T Consensus 157 ~~~~~eer~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~ 234 (916)
T KOG0249|consen 157 HSGNIEERTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEE 234 (916)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 456788899999998888764 3322222 2222668899999999888888888888877665553
No 234
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=67.47 E-value=1.6e+02 Score=30.54 Aligned_cols=75 Identities=15% Similarity=0.196 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HhhhchHHHHhhHHHHHhhhhhHHHhHH-HHHhhhhhHhhHHHHHHHHHHHH
Q 003961 434 NEYQRAQILHLENVLKQTLAKQEE----FKMMNHSEIQKSKEIIDGLNNKLANCMR-TIEAKNVELLNLQTALGQYFAEI 508 (783)
Q Consensus 434 nE~~R~~Is~lEraLK~~~a~qee----lk~~n~~E~~~ske~iedL~~~L~~~me-aleAKnvEl~NLQtALgqfqAE~ 508 (783)
...++..|.+||+.|..++-.+.+ +....+..+..+.+.++..-......+. +++.-+..|..|...+.+.-.+.
T Consensus 36 ~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r 115 (247)
T PF06705_consen 36 FQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEER 115 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445667778888888776665544 2233334444443333322222222222 44554556666666666655554
No 235
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=67.31 E-value=2.8e+02 Score=33.23 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=28.0
Q ss_pred hhchHHHHHHhhcccCcccchhHHHHHHHHHhhhHHH
Q 003961 256 RLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSE 292 (783)
Q Consensus 256 k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~se 292 (783)
|.|+.+|+.-.+|-=.-++.-..+..+.-||+-|.--
T Consensus 90 k~nk~Lq~~nesLeEqv~~~~d~vvql~hels~k~el 126 (596)
T KOG4360|consen 90 KANKALQEDNESLEEQVDAPWDRVVQLGHELSRKDEL 126 (596)
T ss_pred hhhhhhhhhhhhhHhhhcchHHHHHHhhhhhhhhhhh
Confidence 4566666666666666678889999999999988643
No 236
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=67.18 E-value=1.7e+02 Score=30.71 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=16.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 003961 427 IEELRENNEYQRAQILHLENVLKQTLAKQE 456 (783)
Q Consensus 427 IeELreenE~~R~~Is~lEraLK~~~a~qe 456 (783)
+++++..+..++.-|..+|+.+.+.++..+
T Consensus 32 ~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~ 61 (207)
T PF05010_consen 32 YEELHKENQEMRKIMEEYEKTIAQMIEEKQ 61 (207)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555556666665555554433
No 237
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=67.04 E-value=54 Score=28.85 Aligned_cols=64 Identities=27% Similarity=0.333 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHH
Q 003961 513 HLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQ 583 (783)
Q Consensus 513 rLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeq 583 (783)
+|+.+.+.+|+.+..++..+..+........+|-...+.. +.++-.++.+|..+++.|++-|+.
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~-------l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQ-------LGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888887777776666666665554444 455556677777888877777654
No 238
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=66.99 E-value=75 Score=38.22 Aligned_cols=43 Identities=26% Similarity=0.308 Sum_probs=36.4
Q ss_pred HHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHh
Q 003961 224 AAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELK 266 (783)
Q Consensus 224 a~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~ 266 (783)
-.++.++..+..+|+.-+++..+....|...+..+..|.+.+.
T Consensus 178 ~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~ 220 (670)
T KOG0239|consen 178 LKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLG 220 (670)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 4578899999999999999999988888887777777877776
No 239
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=66.93 E-value=1.9e+02 Score=33.12 Aligned_cols=35 Identities=20% Similarity=0.381 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003961 374 KEEMEQSLQKLEKDLKETCSERDKALQELTRLKQH 408 (783)
Q Consensus 374 kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqH 408 (783)
.......++.+..+|.+.+.....+..++.+||-.
T Consensus 207 ~~~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~ 241 (395)
T PF10267_consen 207 SSQQNLGLQKILEELREIKESQSRLEESIEKLKEQ 241 (395)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445567888899999999999999999999974
No 240
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=66.88 E-value=1.8e+02 Score=30.80 Aligned_cols=46 Identities=24% Similarity=0.318 Sum_probs=17.8
Q ss_pred hhhHHHHHHhhhHHHHHHHhhhhhhhh-------hHHhHHHHHHHHHHHHHHH
Q 003961 543 RSEKEEILVKLSHSEKMLAEGKGRANK-------LEEDNAKLRLAVEQSMTRL 588 (783)
Q Consensus 543 ~kEKeei~~KLs~~E~~l~e~K~~~~K-------L~eDn~kLR~ALeqsl~RL 588 (783)
..|++.+..++...+.....+.....+ |..++...|.++..+...|
T Consensus 74 ~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 74 EEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555444444444443333 4444444444444444444
No 241
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=65.95 E-value=2.1e+02 Score=31.32 Aligned_cols=76 Identities=24% Similarity=0.331 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHHH
Q 003961 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKE 390 (783)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e 390 (783)
+.+-|...--.|+++|..++.+...+...-+..|..+.+++ ..++..+..-+.+
T Consensus 72 ~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el~~kF--------------------------q~~L~dIq~~~ee 125 (309)
T PF09728_consen 72 AKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKELSEKF--------------------------QATLKDIQAQMEE 125 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHh
Confidence 44555555666788888888888888888888885543333 3334444444555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 003961 391 TCSERDKALQELTRLKQHLIEK 412 (783)
Q Consensus 391 ~~~E~dKa~kEL~RLRqHLLe~ 412 (783)
....+.+...|=..|+..|=..
T Consensus 126 ~~~~~~k~~~eN~~L~eKlK~l 147 (309)
T PF09728_consen 126 QSERNIKLREENEELREKLKSL 147 (309)
T ss_pred ccchhHHHHHHHHHHHHHHHHH
Confidence 5555666666666666665433
No 242
>PF15294 Leu_zip: Leucine zipper
Probab=64.89 E-value=1.6e+02 Score=32.30 Aligned_cols=136 Identities=24% Similarity=0.238 Sum_probs=73.2
Q ss_pred CcccchhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHH-----HHHHHhcc
Q 003961 271 DKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELV-----AALEKNRK 345 (783)
Q Consensus 271 ~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~-----a~L~~~r~ 345 (783)
+--.|+.||..|-+.|-.-+- --+..||- ....-.+--|+.++..-++.--.|...+++|+ ..+..+..
T Consensus 27 e~t~T~~EV~~~ldgL~~~v~--~~vesEL~----N~~htn~lllrql~~qAek~~lkl~~diselEn~eLLe~i~~~E~ 100 (278)
T PF15294_consen 27 EDTYTSDEVTEMLDGLQVVVK--SEVESELI----NTSHTNVLLLRQLFSQAEKWYLKLQTDISELENRELLEQIAEFEK 100 (278)
T ss_pred HHhhhHHHHHHHHHHHHHHHH--HHHHHHHH----hHHHhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 345777888877666643221 11222221 12223667788888888887666666665554 34443332
Q ss_pred c---CCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 003961 346 S---SNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDE 422 (783)
Q Consensus 346 ~---~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmde 422 (783)
+ ++.+...+ ....++. |-+|. ... .-...|++++..|...||.+|...+......|++
T Consensus 101 ~~~~~~~~~~~~--------~~~~KL~--pl~e~---g~~------~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~E 161 (278)
T PF15294_consen 101 QEFTSSFKPNQE--------TSKPKLE--PLNES---GGS------ELLNKEIDRLQEENEKLKERLKSLEKQATSALDE 161 (278)
T ss_pred hhhcccCCcccc--------ccccccc--ccccc---chH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11111111 0111222 22221 111 1235578888999999999999998877777777
Q ss_pred hhHHHHHHH
Q 003961 423 DSKIIEELR 431 (783)
Q Consensus 423 d~k~IeELr 431 (783)
-+++-..|.
T Consensus 162 k~kl~~~L~ 170 (278)
T PF15294_consen 162 KSKLEAQLK 170 (278)
T ss_pred HHHHHHHHH
Confidence 655554443
No 243
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=64.65 E-value=53 Score=35.59 Aligned_cols=60 Identities=28% Similarity=0.300 Sum_probs=48.9
Q ss_pred ChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHH
Q 003961 373 GKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRE 432 (783)
Q Consensus 373 ~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELre 432 (783)
+.+.+...+.++..+-..+...++|...||.|.+++|-..+.-=-.-|||=.++..||..
T Consensus 177 ~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~ 236 (267)
T PF10234_consen 177 QLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQK 236 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 345666677788888888888899999999999999988876556778888888888886
No 244
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=64.47 E-value=1.6e+02 Score=29.58 Aligned_cols=114 Identities=22% Similarity=0.305 Sum_probs=76.1
Q ss_pred CChhHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHH
Q 003961 372 PGKEEMEQSLQKLEKDLKETCS-----ERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLEN 446 (783)
Q Consensus 372 ~~kEeme~slq~L~~eL~e~~~-----E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEr 446 (783)
|=-.|++..+..|......-.. -.+|...-+..|..-|-...-...+.--....-|..|++.+ .+--+||+
T Consensus 44 ~yl~Ei~~~l~~L~~~~~~~~~~~~~~laEkL~~Q~~AL~r~l~t~~lr~~~~~~~~~~~~~~Lyq~L----~~hqe~er 119 (173)
T PF07445_consen 44 DYLQEIEQTLAQLQQQVEQNRLQQVAFLAEKLVAQIEALQRELATQSLRKKESKPSSRKPIHQLYQRL----AQHQEYER 119 (173)
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhccCccCCccccccCchhHHHHHH----HHHHHHHH
Confidence 4557899999998888766433 56788888888877765544322111110024456665543 23356888
Q ss_pred HHHHHHHHHHH-HhhhchHHHHhhHHHHHhhhhhHHHhHHHHHh
Q 003961 447 VLKQTLAKQEE-FKMMNHSEIQKSKEIIDGLNNKLANCMRTIEA 489 (783)
Q Consensus 447 aLK~~~a~qee-lk~~n~~E~~~ske~iedL~~~L~~~mealeA 489 (783)
.|..-+...+. +...++.+-..+.-+|.-+..+|.-|-.||+.
T Consensus 120 RL~~mi~~~e~~l~~~~~~~~~~lq~ei~a~e~RL~RCr~Ai~~ 163 (173)
T PF07445_consen 120 RLLAMIQEREQQLEQAQSFEQQQLQQEILALEQRLQRCRQAIEK 163 (173)
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877666554 55666667778888899999999999988876
No 245
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=64.27 E-value=1.7e+02 Score=29.78 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=12.9
Q ss_pred HHhhhhhhhhhHHhHHHHHHHHHHHHHHH
Q 003961 560 LAEGKGRANKLEEDNAKLRLAVEQSMTRL 588 (783)
Q Consensus 560 l~e~K~~~~KL~eDn~kLR~ALeqsl~RL 588 (783)
+...+..+..+......-|..+-+-+..+
T Consensus 128 ~~~~~~~l~~l~~~l~~~r~~l~~~l~~i 156 (302)
T PF10186_consen 128 LEERKQRLSQLQSQLARRRRQLIQELSEI 156 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444455444444433
No 246
>PRK10884 SH3 domain-containing protein; Provisional
Probab=63.81 E-value=78 Score=32.86 Aligned_cols=57 Identities=19% Similarity=0.317 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHH
Q 003961 380 SLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILH 443 (783)
Q Consensus 380 slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~ 443 (783)
.+..|+++|.++..+.+...++.. ++.-++ +++...-...|.+|.++|..++.++..
T Consensus 94 rlp~le~el~~l~~~l~~~~~~~~---~~~~~l----~~~~~~~~~~~~~L~~~n~~L~~~l~~ 150 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNIDNTWN---QRTAEM----QQKVAQSDSVINGLKEENQKLKNQLIV 150 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH---HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555544444444433 222222 223333344566676666555554444
No 247
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=62.53 E-value=1.3e+02 Score=27.62 Aligned_cols=48 Identities=21% Similarity=0.347 Sum_probs=37.0
Q ss_pred hHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 003961 493 ELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAE 540 (783)
Q Consensus 493 El~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie 540 (783)
-|.+|..++.+...-..+...++.+++.+..+-..|++.|..+..+..
T Consensus 16 aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~ 63 (89)
T PF13747_consen 16 AIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARAN 63 (89)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHH
Confidence 467788888888777777777888888888888888888877776643
No 248
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=61.72 E-value=4.2e+02 Score=33.37 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Q 003961 381 LQKLEKDLKETCSERDKALQELTRL 405 (783)
Q Consensus 381 lq~L~~eL~e~~~E~dKa~kEL~RL 405 (783)
+..+..++.+.....+.+..++..+
T Consensus 532 l~~~~~~~~~~~~~~~~~~~~~~~~ 556 (1047)
T PRK10246 532 LDALEKEVKKLGEEGAALRGQLDAL 556 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555444444444433333
No 249
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=61.38 E-value=2.4e+02 Score=30.48 Aligned_cols=131 Identities=13% Similarity=0.174 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH--HHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003961 381 LQKLEKDLKETCSERDKALQELTRLKQH--LIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEF 458 (783)
Q Consensus 381 lq~L~~eL~e~~~E~dKa~kEL~RLRqH--LLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeel 458 (783)
+.-++.+|.+.+.+.+.++..|...|.. +++.+. + .......|.+| +.++..++..|.....
T Consensus 172 ~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~--~--~~~~~~~i~~L-------~~~l~~~~~~l~~l~~----- 235 (362)
T TIGR01010 172 IAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKA--Q--SSAQLSLISTL-------EGELIRVQAQLAQLRS----- 235 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHH--H--HHHHHHHHHHH-------HHHHHHHHHHHHHHHh-----
Confidence 3345555666666666666666666653 222211 1 11112233433 3333444433332211
Q ss_pred hhhc-hHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 003961 459 KMMN-HSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNAD 536 (783)
Q Consensus 459 k~~n-~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~ 536 (783)
.... .-.+..++.+|..|..++......+.... ...|...+.+|. +|++|...++.-...+-+.++.+.
T Consensus 236 ~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i~~~~--~~~l~~~~~~~~-------~L~re~~~a~~~y~~~l~r~~~a~ 305 (362)
T TIGR01010 236 ITPEQNPQVPSLQARIKSLRKQIDEQRNQLSGGL--GDSLNEQTADYQ-------RLVLQNELAQQQLKAALTSLQQTR 305 (362)
T ss_pred hCCCCCCchHHHHHHHHHHHHHHHHHHHHhhcCC--CccHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122 34667777777777777665443332211 012333444332 566666666666555444444444
No 250
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=61.10 E-value=4.6e+02 Score=33.65 Aligned_cols=64 Identities=19% Similarity=0.274 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHh---hHHHHHHHHHHhc
Q 003961 276 SIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKM---EKTELVAALEKNR 344 (783)
Q Consensus 276 s~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~---~~~eL~a~L~~~r 344 (783)
--++.++.+|++-+-+++|+|+.++..-. .-++.++..+..+.++...+.. .|...+++|++.+
T Consensus 635 ee~~~~~~~~~~~~~~~~r~lee~~~k~~-----k~le~~~~~~~~~~~er~~~~~~~~~~~~r~~~ie~~~ 701 (1072)
T KOG0979|consen 635 EEEIQKLKAEIDIRSSTLRELEEKKQKER-----KELEEEQKKLKLLKRERTKLNSELKSYQQRKERIENLV 701 (1072)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34556677777777888888877766522 1233444455555555555555 4444455555544
No 251
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=60.91 E-value=1.7e+02 Score=28.73 Aligned_cols=158 Identities=18% Similarity=0.188 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHHHh
Q 003961 312 VENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKET 391 (783)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e~ 391 (783)
++.|......+......+..++..|..+|...-.+..+ +.-.+- +. .|.-+..-.--|-.-+...
T Consensus 5 ~~el~~~~~~~~~~~~~~~~~l~~l~~ai~~~~~~~~~-LkGka~---------ds-----iK~y~~~vh~pll~~~~~~ 69 (204)
T PF04740_consen 5 VSELHSQAESTNSSLKELKEQLESLQKAINQFISSESS-LKGKAY---------DS-----IKNYFSEVHIPLLQGLILL 69 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcch-hhhHHH---------HH-----HHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666777777777777766522100 111100 00 1112222122223334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhH
Q 003961 392 CSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIE-ELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSK 470 (783)
Q Consensus 392 ~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~Ie-ELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~sk 470 (783)
. +-....|..++...-+.+.......+++ .++ ++...++.....+.++...+...+..-.++-.+.......+.
T Consensus 70 ~---~~~~~~l~~~~~~~~~vd~~~~a~i~e~--~L~~el~~~l~~~~~~~~~~~~~~~~~~~~vsdiv~~~~~~~~~~~ 144 (204)
T PF04740_consen 70 L---EEYQEALKFIKDFQSEVDSSSNAIIDED--FLESELKKKLNQLKEQIEDLQDEINSILSSVSDIVSLPKPSSSSFI 144 (204)
T ss_pred H---HHHHHHHHhHHHHHHHHcccccccccHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHhhccchHHHHH
Confidence 2 3333444555665555543333445553 344 665556666666777666665544432332112211233444
Q ss_pred HHHHhhhhhHHHhHHHHHh
Q 003961 471 EIIDGLNNKLANCMRTIEA 489 (783)
Q Consensus 471 e~iedL~~~L~~~mealeA 489 (783)
..+...+++|...++-|.+
T Consensus 145 ~~~~~~~~~l~~~lekL~~ 163 (204)
T PF04740_consen 145 DSLEKAKKKLQETLEKLRA 163 (204)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555554444443
No 252
>PF15456 Uds1: Up-regulated During Septation
Probab=60.22 E-value=1.2e+02 Score=29.36 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003961 381 LQKLEKDLKETCSERDKALQELTRLKQHLIE 411 (783)
Q Consensus 381 lq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe 411 (783)
+..+.+-+.+...+..++..-+.++|++||+
T Consensus 83 l~~~~rk~ee~~~eL~~le~R~~~~~~rLLe 113 (124)
T PF15456_consen 83 LAESDRKCEELAQELWKLENRLAEVRQRLLE 113 (124)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777888888888888888999998886
No 253
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=59.53 E-value=3e+02 Score=32.99 Aligned_cols=93 Identities=20% Similarity=0.350 Sum_probs=50.2
Q ss_pred HhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHH--HHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHH
Q 003961 482 NCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREE--SAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKM 559 (783)
Q Consensus 482 ~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree--~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~ 559 (783)
..+..++.+=.+...=|.+|++-|.+. .+-|.+ ++.....|+.|.|++-.. +.-+-.+.-|..+...
T Consensus 385 ~~l~~le~~l~~~~~~~~~L~~~~~~l----------~~~r~dW~laEae~Ll~lA~q~L~l~-~dv~~A~~~L~~AD~~ 453 (656)
T PRK06975 385 SQFAQLDGKLADAQSAQQALEQQYQDL----------SRNRDDWMIAEVEQMLSSASQQLQLT-GNVQLALIALQNADAR 453 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------hcChhhhHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHH
Confidence 334444444344445555666666544 233333 444556677777775321 1111122233344444
Q ss_pred HHhhhhhhhhhH-HhHHHHHHHHHHHHHHHhhcc
Q 003961 560 LAEGKGRANKLE-EDNAKLRLAVEQSMTRLNRMS 592 (783)
Q Consensus 560 l~e~K~~~~KL~-eDn~kLR~ALeqsl~RL~~ms 592 (783)
|++ +. -....+|+||.+-|.+|+.+.
T Consensus 454 La~-------~~~P~l~~lR~Ala~Di~~L~~~~ 480 (656)
T PRK06975 454 LAT-------SDSPQAVAVRKAIAQDIERLKAAP 480 (656)
T ss_pred HHh-------cCCcchHHHHHHHHHHHHHHhcCC
Confidence 444 33 236789999999999999876
No 254
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=59.18 E-value=1.7e+02 Score=35.62 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=14.9
Q ss_pred hhHHHhhhhhccccchhhhhhhhHHHHHhhhcC
Q 003961 103 EKEEQISRLNGEYGLLKQNLDATNAALNAFRNG 135 (783)
Q Consensus 103 ekedqi~rl~~engslk~nl~~t~~al~~~r~~ 135 (783)
+-++.|.+.=-++|.++. .+++.|..-|..
T Consensus 125 ~l~~~i~~~id~~g~i~d---~aS~~L~~ir~~ 154 (771)
T TIGR01069 125 PLENDIIACIDDDGKVKD---GASEELDAIRES 154 (771)
T ss_pred HHHHHHHHHhCCCCEECC---CcCHHHHHHHHH
Confidence 344555555556676663 344444444433
No 255
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=58.91 E-value=3.4e+02 Score=31.48 Aligned_cols=30 Identities=17% Similarity=0.161 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003961 381 LQKLEKDLKETCSERDKALQELTRLKQHLI 410 (783)
Q Consensus 381 lq~L~~eL~e~~~E~dKa~kEL~RLRqHLL 410 (783)
++.++..-.+...+.+.+.-.|..|...=+
T Consensus 177 L~~l~~~~~~~~~eld~L~~ql~ELe~~~l 206 (563)
T TIGR00634 177 LKDRQQKEQELAQRLDFLQFQLEELEEADL 206 (563)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhCCc
Confidence 445555555555666666666666655433
No 256
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=58.19 E-value=97 Score=38.26 Aligned_cols=22 Identities=32% Similarity=0.285 Sum_probs=14.1
Q ss_pred CCCCccccCC--CCCccccccccC
Q 003961 748 SQGNFRQLEH--SDSEFSTVPLSS 769 (783)
Q Consensus 748 ~~~~~~~~~~--~dsefstvplts 769 (783)
..+..|-.+. .|+-|+++-+.|
T Consensus 792 ~~~~~~~k~~~v~D~Sf~~~d~~s 815 (861)
T PF15254_consen 792 QSSNSQVKGSTVCDSSFSNSDLMS 815 (861)
T ss_pred cCCcccccccccccccccccchhc
Confidence 3444555444 588888888873
No 257
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=57.69 E-value=2.3e+02 Score=29.08 Aligned_cols=112 Identities=18% Similarity=0.258 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHH
Q 003961 437 QRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLER 516 (783)
Q Consensus 437 ~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ 516 (783)
++..|....++|...++....+ ..++......+.++..+... +|.+-+..|+ ..||..-..-.+....|+.
T Consensus 36 m~~~l~~ar~~lA~~~a~~k~~----e~~~~~~~~~~~~~~~~A~~---Al~~G~EdLA--r~Al~~k~~~~~~~~~l~~ 106 (219)
T TIGR02977 36 MEDTLVEVRTTSARTIADKKEL----ERRVSRLEAQVADWQEKAEL---ALSKGREDLA--RAALIEKQKAQELAEALER 106 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH---HHHCCCHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 3446677777777777754432 33444455555555444332 4454444444 2466677766777788888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHH
Q 003961 517 ELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSE 557 (783)
Q Consensus 517 ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E 557 (783)
.+..++..+..|...|...++.++..+.-+..++++...++
T Consensus 107 ~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~ 147 (219)
T TIGR02977 107 ELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAAS 147 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999998898888888777666666666654333
No 258
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=57.49 E-value=3.6e+02 Score=31.24 Aligned_cols=150 Identities=22% Similarity=0.302 Sum_probs=80.5
Q ss_pred HHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHh--------
Q 003961 471 EIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVS-------- 542 (783)
Q Consensus 471 e~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~-------- 542 (783)
+.+.+|-.++..|...|+.-..-|.+.|+=||.+-. |+..+++....+...|+--+...+..
T Consensus 14 ~~~~~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS~----------eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~i~ 83 (508)
T PF04129_consen 14 ENFADLHNQIQECDSILESLEEMLSNFQNDLGSISS----------EIRSLQERSSSLNVKLKNRKAVEEKLSPFIDDIV 83 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHc
Confidence 456777778888888887744445555555555444 44556666666655555444332221
Q ss_pred ------------------hhhHHHHHHhhhHHH--------HHHHhhhhhhhhhH-HhHHHHHHHHHHHHHHHhhccCCc
Q 003961 543 ------------------RSEKEEILVKLSHSE--------KMLAEGKGRANKLE-EDNAKLRLAVEQSMTRLNRMSVDS 595 (783)
Q Consensus 543 ------------------~kEKeei~~KLs~~E--------~~l~e~K~~~~KL~-eDn~kLR~ALeqsl~RL~~ms~ds 595 (783)
..++.++..|+.... +...|.+..+.+|+ -=+++.|..|-.-|..|+.-..+.
T Consensus 84 ipP~lI~~I~~~~v~e~~~~~~~~~~~k~~~~~~~~~~~~~~a~~d~~~~Le~L~~ka~~rir~fl~~kI~~lr~~~tn~ 163 (508)
T PF04129_consen 84 IPPDLIRSICEGPVNEQYIEELLELLKKKIFFSKDQSFKDSKAIKDVKPELEKLKNKAVERIRDFLLKKIKSLRKPKTNS 163 (508)
T ss_pred CCHHHHHhHhcCCCCHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCch
Confidence 222223333322111 22455556667776 445788888888888888754333
Q ss_pred chhhhHHHHH-HHHHHHHhcCCch---HHHHHHHHhcCCC
Q 003961 596 DFLVDRRIVI-KLLVTYFQRNHSK---EVLDLMVRMLGFS 631 (783)
Q Consensus 596 D~~VDRRIVt-kLLLTYf~R~~sK---EVL~LMArMLgFS 631 (783)
. .+=..|+. +-|..|+.+++.+ ||-+.=+..|+|.
T Consensus 164 q-~iQ~~LLk~~~~~~FL~~~~~~~a~El~~~Yv~tM~~~ 202 (508)
T PF04129_consen 164 Q-IIQQVLLKYKELFQFLKKHSPELAKELRQAYVETMSWY 202 (508)
T ss_pred H-HHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 2 11112221 2344555555544 6655555555554
No 259
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=57.39 E-value=67 Score=31.30 Aligned_cols=91 Identities=21% Similarity=0.292 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCC---CCCCCCCCCChhHHHHHHHHHHHHHH
Q 003961 313 ENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLD---GMVSSESFPGKEEMEQSLQKLEKDLK 389 (783)
Q Consensus 313 ~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~---d~~~~~sf~~kEeme~slq~L~~eL~ 389 (783)
+.|+..+..+--++.+++++.++.+-+|..+- ++-+|+.=+-.-+. .+++.. ...+++...+.|+..++
T Consensus 16 QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele-----~l~eD~~vYk~VG~llvk~~k~~---~~~eL~er~E~Le~ri~ 87 (119)
T COG1382 16 QQLQQQLQKVILQKQQLEAQLKEIEKALEELE-----KLDEDAPVYKKVGNLLVKVSKEE---AVDELEERKETLELRIK 87 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCcccHHHHHhhhHHhhhhHHH---HHHHHHHHHHHHHHHHH
Confidence 45556666666667777777777777777765 34444321111111 112211 33455555555555555
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH
Q 003961 390 ETCSERDKALQELTRLKQHLIE 411 (783)
Q Consensus 390 e~~~E~dKa~kEL~RLRqHLLe 411 (783)
-...--.+...+|..|+..|.+
T Consensus 88 tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 88 TLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555443
No 260
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=57.36 E-value=51 Score=35.06 Aligned_cols=34 Identities=26% Similarity=0.289 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhccc
Q 003961 313 ENLKRVVATLEKENNSLKMEKTELVAALEKNRKS 346 (783)
Q Consensus 313 ~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~ 346 (783)
+.|+..+..++.+....+.=+..||.+|.+.-..
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~ 35 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQAS 35 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5788889999999999999999999999988855
No 261
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=57.11 E-value=4.8e+02 Score=32.58 Aligned_cols=16 Identities=19% Similarity=0.048 Sum_probs=7.7
Q ss_pred HhHHHHHHHHHHHHHH
Q 003961 390 ETCSERDKALQELTRL 405 (783)
Q Consensus 390 e~~~E~dKa~kEL~RL 405 (783)
....+...+.+++..|
T Consensus 677 ~~~~~lq~lq~ql~~L 692 (1042)
T TIGR00618 677 SRQLALQKMQSEKEQL 692 (1042)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444455555555
No 262
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=57.10 E-value=1.9e+02 Score=30.88 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=12.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Q 003961 385 EKDLKETCSERDKALQELTRLKQH 408 (783)
Q Consensus 385 ~~eL~e~~~E~dKa~kEL~RLRqH 408 (783)
++++.+.+...+.+.+++..|...
T Consensus 203 ek~~~~~~~k~e~~e~e~~~l~e~ 226 (297)
T PF02841_consen 203 EKEIEEEQAKAEAAEKEKEKLEEK 226 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555666555544
No 263
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=57.09 E-value=2.1e+02 Score=28.47 Aligned_cols=63 Identities=21% Similarity=0.298 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHh
Q 003961 513 HLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLN 589 (783)
Q Consensus 513 rLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~ 589 (783)
+|+.||..++.+...|.+.|..-+.+ ++..+....+....+..++.+-.++...+..++..|.
T Consensus 70 ~L~~EL~~l~sEk~~L~k~lq~~q~k--------------v~eLE~~~~~~~~~l~~~E~ek~q~~e~~~~~ve~L~ 132 (140)
T PF10473_consen 70 QLELELDTLRSEKENLDKELQKKQEK--------------VSELESLNSSLENLLQEKEQEKVQLKEESKSAVEMLQ 132 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544433333 3444555555555555566666666666666665553
No 264
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=55.40 E-value=2e+02 Score=29.50 Aligned_cols=83 Identities=24% Similarity=0.359 Sum_probs=52.8
Q ss_pred HHHHHhhchHHHHHHhhcccCcccchhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhH
Q 003961 251 LQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLK 330 (783)
Q Consensus 251 lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk 330 (783)
|+..++-|..+.++| .|++.++..++.||..|-.+.+.-+.-+++-=+.+.+. +=.|=+.+..|+..-..|+
T Consensus 90 LEq~~~~N~~L~~dl-------~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~eh~r-ll~LWr~v~~lRr~f~elr 161 (182)
T PF15035_consen 90 LEQARKANEALQEDL-------QKLTQDWERLRDELEQKEAEWREEEENFNQYLSSEHSR-LLSLWREVVALRRQFAELR 161 (182)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccH-HHHHHHHHHHHHHHHHHHH
Confidence 333444444444444 46677788899999999999988888888776666665 3345566666666655555
Q ss_pred hhHHHHHHHHHHhc
Q 003961 331 MEKTELVAALEKNR 344 (783)
Q Consensus 331 ~~~~eL~a~L~~~r 344 (783)
++- +-.|..||
T Consensus 162 ~~T---erdL~~~r 172 (182)
T PF15035_consen 162 TAT---ERDLSDMR 172 (182)
T ss_pred HHH---HhhHHHHH
Confidence 432 34555555
No 265
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=55.33 E-value=3.3e+02 Score=30.57 Aligned_cols=71 Identities=17% Similarity=0.239 Sum_probs=47.7
Q ss_pred hhhHHHHHHhhhHHHHHHHhhhh---hhhhhH-----HhHHHHHHHHHHHHHHHhhcc-------CCcchhhhHHHHHHH
Q 003961 543 RSEKEEILVKLSHSEKMLAEGKG---RANKLE-----EDNAKLRLAVEQSMTRLNRMS-------VDSDFLVDRRIVIKL 607 (783)
Q Consensus 543 ~kEKeei~~KLs~~E~~l~e~K~---~~~KL~-----eDn~kLR~ALeqsl~RL~~ms-------~dsD~~VDRRIVtkL 607 (783)
.++.++++++|++.+.+|+-++. .+.|+. ++.--+---|.++|.||++-- +-.|...+=+.=-.-
T Consensus 67 qR~y~ema~~L~~LeavLqRir~G~~LVekM~~YASDQEVLdMh~FlreAL~rLrqeePq~lqa~V~td~F~E~k~rLQ~ 146 (324)
T PF12126_consen 67 QRDYEEMAGQLGRLEAVLQRIRTGGALVEKMKLYASDQEVLDMHGFLREALERLRQEEPQNLQAAVRTDGFDEFKARLQD 146 (324)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhhhcCcccccceecccHHHHHHHHHH
Confidence 47778899999999999999885 455543 555556666778888887632 112334444555566
Q ss_pred HHHHHh
Q 003961 608 LVTYFQ 613 (783)
Q Consensus 608 LLTYf~ 613 (783)
|++.++
T Consensus 147 L~scIt 152 (324)
T PF12126_consen 147 LVSCIT 152 (324)
T ss_pred HHHHHh
Confidence 777776
No 266
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=55.26 E-value=54 Score=29.89 Aligned_cols=62 Identities=31% Similarity=0.366 Sum_probs=49.8
Q ss_pred cCcccchhHHHHHHHHHhhh-HHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHH
Q 003961 270 MDKDKTSIEITEMRKELNGK-LSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTEL 336 (783)
Q Consensus 270 ~~~~kts~~~~~~~~el~ek-~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL 336 (783)
|....++.+++.+..|-.++ +.+|..||.-|.. -.+-|+.+|.+.+.|+.||..|..=++.|
T Consensus 1 msp~~~~~d~e~~~~e~k~~Li~ei~~LQ~sL~~-----L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 1 MSPRRNSEDIEKLEKEEKEELIQEILELQDSLEA-----LSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred CCCCCchHHHHHHhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888887775554 5688889988753 44678999999999999999999988888
No 267
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=54.69 E-value=4.8e+02 Score=31.92 Aligned_cols=108 Identities=18% Similarity=0.195 Sum_probs=62.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCC
Q 003961 279 ITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEY 358 (783)
Q Consensus 279 ~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~ 358 (783)
..+|-.++.|-..++-.+-++|-. ...+-.++.++........|...+...++.|..+...+++......
T Consensus 23 L~~IW~~igE~~~e~d~~l~~le~-------e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~--- 92 (660)
T KOG4302|consen 23 LQKIWDEIGESETERDKKLLRLEQ-------ECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGE--- 92 (660)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc---
Confidence 556666666655555544444422 2444555777777777777777777778877777766666655442
Q ss_pred CCcCCCCCCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 003961 359 PSRLDGMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLK 406 (783)
Q Consensus 359 ~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLR 406 (783)
.+++... .|...+..|...|...+...+...+|+.-|.
T Consensus 93 -----~~~k~e~-----tLke~l~~l~~~le~lr~qk~eR~~ef~el~ 130 (660)
T KOG4302|consen 93 -----ISDKIEG-----TLKEQLESLKPYLEGLRKQKDERRAEFKELY 130 (660)
T ss_pred -----cccccCc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111110 3444455666666666655555555555444
No 268
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=54.46 E-value=92 Score=28.40 Aligned_cols=93 Identities=15% Similarity=0.245 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCC--CCCCCCCCChhHHHHHHHHHHHHHH
Q 003961 312 VENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDG--MVSSESFPGKEEMEQSLQKLEKDLK 389 (783)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d--~~~~~sf~~kEeme~slq~L~~eL~ 389 (783)
...|+..+..+-.+...|..+++|....++.+...- +| +.+-...-. +.... --..+.++..++.+..+++
T Consensus 8 ~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~-----~d-~~vy~~VG~vfv~~~~-~ea~~~Le~~~e~le~~i~ 80 (105)
T cd00632 8 LQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLA-----DD-AEVYKLVGNVLVKQEK-EEARTELKERLETIELRIK 80 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----Cc-chHHHHhhhHHhhccH-HHHHHHHHHHHHHHHHHHH
Confidence 455666677777778888888888888888887331 11 111010000 11100 0023344555555555555
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH
Q 003961 390 ETCSERDKALQELTRLKQHLIE 411 (783)
Q Consensus 390 e~~~E~dKa~kEL~RLRqHLLe 411 (783)
......+...+++..|+.+|-+
T Consensus 81 ~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 81 RLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555443
No 269
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=54.38 E-value=2.6e+02 Score=28.79 Aligned_cols=174 Identities=19% Similarity=0.190 Sum_probs=80.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 003961 385 EKDLKETCSERDKALQELTRLKQHLIEKAQE-ESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNH 463 (783)
Q Consensus 385 ~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~E-e~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~ 463 (783)
.....+...-.+.+-+++.+|++.|-..... ....-+-...-+++|.+.+.....++..|+..|.........+
T Consensus 37 ~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~----- 111 (240)
T PF12795_consen 37 KKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEI----- 111 (240)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 3344444444555555666666654443221 1112222234467888887778888888888887653332221
Q ss_pred HHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHhhhHHHHh
Q 003961 464 SEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAK-GHLERELALAREESAKLSEYLKNADQRAEVS 542 (783)
Q Consensus 464 ~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~-ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~ 542 (783)
....+..-+.+.+....+..-+..|.++...=+ -.-.+|. -.|..|++....++.-+...|..+....+..
T Consensus 112 ------~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~--~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~ 183 (240)
T PF12795_consen 112 ------QTRPERAQQQLSEARQRLQEIRNQLQNLPPNGE--SPLSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQELL 183 (240)
T ss_pred ------HccHHHHHHHHHHHHHHHHHHHHHHhccCCCCc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHH
Confidence 111222222222222222222222222100000 1111121 2345555556666666666666666665554
Q ss_pred hhhHHHHHHhhhHHHHHHHhhhhhhhhhH
Q 003961 543 RSEKEEILVKLSHSEKMLAEGKGRANKLE 571 (783)
Q Consensus 543 ~kEKeei~~KLs~~E~~l~e~K~~~~KL~ 571 (783)
...-+....++...+..+..++..++..+
T Consensus 184 ~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R 212 (240)
T PF12795_consen 184 QLQRDLLKARIQRLQQQLQALQNLLNQKR 212 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333334455556666666665554443
No 270
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=54.37 E-value=3.6e+02 Score=30.32 Aligned_cols=13 Identities=23% Similarity=0.215 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHhH
Q 003961 684 ADLWVDFLLKETE 696 (783)
Q Consensus 684 ADLWVEFLLkEAe 696 (783)
..|||+|-+.|..
T Consensus 356 ~~l~v~~~V~e~d 368 (457)
T TIGR01000 356 RKLKVTAYLPSND 368 (457)
T ss_pred CcEEEEEEeCHHH
Confidence 4577777777663
No 271
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=54.18 E-value=1.9e+02 Score=29.47 Aligned_cols=105 Identities=21% Similarity=0.343 Sum_probs=70.7
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCcccchhHHHHHHHHHhhhHHHHHHHHHHhc
Q 003961 222 ERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELN 301 (783)
Q Consensus 222 ~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~ 301 (783)
+.......+.+|..+++.-+.+...++.+++++.. +|.-+ -+-..+-.+|.+-..++..|+.+|.
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~--------------~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 63 AKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKK--------------GREES-EEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------ccccc-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677788888888888887777777666532 33222 3444556667777777788888887
Q ss_pred ccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHH
Q 003961 302 RREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEK 342 (783)
Q Consensus 302 ~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~ 342 (783)
-- ...+.+.++.++..+..+...-+...-.+--|..=+..
T Consensus 128 ~~-~~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 128 KY-SENDPEKIEKLKEEIKIAKEAANRWTDNIFSLKSYLKK 167 (188)
T ss_pred HH-HhcCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 32 23334688888888888888877777777777666654
No 272
>KOG1574 consensus Predicted cell growth/differentiation regulator, contains RA domain [Extracellular structures]
Probab=53.86 E-value=3.7e+02 Score=30.90 Aligned_cols=78 Identities=19% Similarity=0.168 Sum_probs=36.7
Q ss_pred HHHhhHHHHHhhhhhHHHhHHHHHhh-hhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhh
Q 003961 465 EIQKSKEIIDGLNNKLANCMRTIEAK-NVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSR 543 (783)
Q Consensus 465 E~~~ske~iedL~~~L~~~mealeAK-nvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~ 543 (783)
.+...-.+|..|.+.|...-+-+++- .-+..++- ++.|..|..-..++-..|.. .+..+...|+.+.+..+..+
T Consensus 227 ~l~e~l~q~r~l~~eL~~e~e~~e~~~~p~~e~~~--~erv~~eL~~s~~~~~~l~~---~l~av~r~l~~~~~~lq~k~ 301 (375)
T KOG1574|consen 227 DLEEYLKQIRELNKELQAEEELLEAAGPPEPEALL--IERVKTELATSVKIGLRLER---SLEAVNRSLKASLRVLECKK 301 (375)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhhcccCCCchhhhh--HHHHhhHHHHHHHHHHHHHh---hHHHHHHhhhHHHHHHHHHH
Confidence 33344466666766666554333332 12333333 56666666554444333333 33333344555555545444
Q ss_pred hhHH
Q 003961 544 SEKE 547 (783)
Q Consensus 544 kEKe 547 (783)
+|-+
T Consensus 302 ~Ele 305 (375)
T KOG1574|consen 302 RELE 305 (375)
T ss_pred HHHH
Confidence 4433
No 273
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=53.53 E-value=1.3e+02 Score=31.97 Aligned_cols=67 Identities=19% Similarity=0.344 Sum_probs=40.8
Q ss_pred HHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCcccchhHHHHHHHHHhhhHHHHHHHHHHhcc
Q 003961 236 ELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNR 302 (783)
Q Consensus 236 el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~ 302 (783)
+|++-...+..--..+..|.++=+-+..|.+.|..+|..-.-++..||...|.=-..|+.+..+.++
T Consensus 12 ~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~ 78 (230)
T PF10146_consen 12 ELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNK 78 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333343334445555555556677777777777777777777777777766666666655544
No 274
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=53.45 E-value=4.1e+02 Score=30.69 Aligned_cols=39 Identities=38% Similarity=0.506 Sum_probs=22.7
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhhHh-hHHHHHHHHHHhc
Q 003961 306 GDANDVVENLKRVVATLEKENNSLKM-EKTELVAALEKNR 344 (783)
Q Consensus 306 e~~~~~~~sLk~~~~~L~kEn~tlk~-~~~eL~a~L~~~r 344 (783)
...+..+...+..+.+|.++...++. ...++...|+.-+
T Consensus 247 ~~~~~~i~~a~~~i~~L~~~l~~l~~~~~~~l~~~L~~q~ 286 (582)
T PF09731_consen 247 SDLNSLIAHAKERIDALQKELAELKEEEEEELERALEEQR 286 (582)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445777777777777776666554 2335555555444
No 275
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=53.27 E-value=1.4e+02 Score=26.40 Aligned_cols=31 Identities=19% Similarity=0.272 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003961 377 MEQSLQKLEKDLKETCSERDKALQELTRLKQ 407 (783)
Q Consensus 377 me~slq~L~~eL~e~~~E~dKa~kEL~RLRq 407 (783)
|+....+|+..|.-+.+.......++.+|++
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ 33 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRR 33 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555444
No 276
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=53.22 E-value=3.7e+02 Score=30.06 Aligned_cols=34 Identities=26% Similarity=0.431 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhc
Q 003961 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (783)
-++.|-..++.|+||+.--..++..|+|+|..-+
T Consensus 19 KIqelE~QldkLkKE~qQrQfQleSlEAaLqKQK 52 (307)
T PF10481_consen 19 KIQELEQQLDKLKKERQQRQFQLESLEAALQKQK 52 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3566777888899999998899999999998766
No 277
>PRK09343 prefoldin subunit beta; Provisional
Probab=52.66 E-value=2.1e+02 Score=27.18 Aligned_cols=100 Identities=25% Similarity=0.266 Sum_probs=60.8
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccC--------cccchhHHHHHHHHHhhhHHHH
Q 003961 222 ERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMD--------KDKTSIEITEMRKELNGKLSEL 293 (783)
Q Consensus 222 ~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~--------~~kts~~~~~~~~el~ek~sei 293 (783)
++....+++.++. .+.+...++..-...|+-+.+.|+.-.+||..|.=| +-=...+..++..+|++++.-|
T Consensus 5 ~~~~~q~~~~~~q-~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~i 83 (121)
T PRK09343 5 IPPEVQAQLAQLQ-QLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELL 83 (121)
T ss_pred hhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHH
Confidence 4445555555554 345555555555666777777788888888877622 1112345566777777766655
Q ss_pred HHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhc
Q 003961 294 RRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 294 ~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (783)
. ..|..|++....+..++.++...|..+-
T Consensus 84 e----------------------~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 84 E----------------------LRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred H----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 4556666666666666666666666654
No 278
>PRK10698 phage shock protein PspA; Provisional
Probab=52.29 E-value=2.7e+02 Score=28.96 Aligned_cols=21 Identities=14% Similarity=0.243 Sum_probs=10.2
Q ss_pred HHhhHHHHHhhhhhHHHhHHH
Q 003961 466 IQKSKEIIDGLNNKLANCMRT 486 (783)
Q Consensus 466 ~~~ske~iedL~~~L~~~mea 486 (783)
++.+++.+..+++-|+..|..
T Consensus 33 i~em~~~l~~~r~alA~~~A~ 53 (222)
T PRK10698 33 IQEMEDTLVEVRSTSARALAE 53 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555543
No 279
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=52.18 E-value=6.3e+02 Score=32.53 Aligned_cols=63 Identities=21% Similarity=0.321 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCcccchhHHHHHHHHHhhhH
Q 003961 228 SQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKL 290 (783)
Q Consensus 228 ~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~ 290 (783)
.+|++|..+|+.-+..+..++-.+.-+...+..+++++..|+-.-..+..++.-+..|+.+-.
T Consensus 448 ~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~ 510 (1041)
T KOG0243|consen 448 EQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAK 510 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888888888888888888888888887777777776666655554433
No 280
>PRK10884 SH3 domain-containing protein; Provisional
Probab=52.09 E-value=2.6e+02 Score=29.14 Aligned_cols=61 Identities=20% Similarity=0.311 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHH
Q 003961 518 LALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRL 588 (783)
Q Consensus 518 La~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL 588 (783)
+..++.++++|.+.|..+++.... ++.++..++........+ |+++|..|++.|..+-..+
T Consensus 95 lp~le~el~~l~~~l~~~~~~~~~---~~~~l~~~~~~~~~~~~~-------L~~~n~~L~~~l~~~~~~~ 155 (206)
T PRK10884 95 VPDLENQVKTLTDKLNNIDNTWNQ---RTAEMQQKVAQSDSVING-------LKEENQKLKNQLIVAQKKV 155 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555544432 222233343333333333 5555555555555444443
No 281
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=51.19 E-value=2.9e+02 Score=33.84 Aligned_cols=21 Identities=33% Similarity=0.371 Sum_probs=11.4
Q ss_pred hhhhHHHhhhhhccccchhhh
Q 003961 101 LKEKEEQISRLNGEYGLLKQN 121 (783)
Q Consensus 101 lkekedqi~rl~~engslk~n 121 (783)
+.+-.+.|.+.=-++|.++.+
T Consensus 128 ~~~l~~~i~~~id~~g~i~d~ 148 (782)
T PRK00409 128 LPELEQEIHNCIDEEGEVKDS 148 (782)
T ss_pred cHHHHHHHHHHhCCCCEECCC
Confidence 344455555555556666554
No 282
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=50.80 E-value=4.4e+02 Score=30.28 Aligned_cols=96 Identities=19% Similarity=0.303 Sum_probs=57.2
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCcccchhHHHHHHHHHhhhHHHHHHHH
Q 003961 218 SLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQ 297 (783)
Q Consensus 218 ~~aa~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq 297 (783)
.+=..+..++..|..|+.++-++ +..+--.||||.-+-+.+.++||.+- +---.||.-|..||.-=...+.=
T Consensus 223 eik~~~~~L~~~~e~Lk~~~~~e---~~~~~~~LqEEr~R~erLEeqlNd~~---elHq~Ei~~LKqeLa~~EEK~~Y-- 294 (395)
T PF10267_consen 223 EIKESQSRLEESIEKLKEQYQRE---YQFILEALQEERYRYERLEEQLNDLT---ELHQNEIYNLKQELASMEEKMAY-- 294 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHH--
Confidence 33446777778888888776555 45677789999999999999998762 22233444454444321111111
Q ss_pred HHhcccccCCcchHHHHHHHHHHHHH
Q 003961 298 MELNRREDGDANDVVENLKRVVATLE 323 (783)
Q Consensus 298 ~~l~~~e~e~~~~~~~sLk~~~~~L~ 323 (783)
.+.-.--|..+.+++.++-|..||
T Consensus 295 --qs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 295 --QSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred --HHHHHHhHHHHHHHHHHHHHHHHH
Confidence 112223345567777777777776
No 283
>PRK10869 recombination and repair protein; Provisional
Probab=50.79 E-value=4.7e+02 Score=30.65 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=14.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003961 382 QKLEKDLKETCSERDKALQELTRLKQHLIE 411 (783)
Q Consensus 382 q~L~~eL~e~~~E~dKa~kEL~RLRqHLLe 411 (783)
..++++|.+.........+++.-|+-.+=+
T Consensus 167 ~~~~~~l~~l~~~~~~~~~~~d~l~fql~E 196 (553)
T PRK10869 167 HQSCRDLAQHQQQSQERAARKQLLQYQLKE 196 (553)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344444555544444455555555554333
No 284
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=50.53 E-value=5.3e+02 Score=31.11 Aligned_cols=174 Identities=22% Similarity=0.299 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhh
Q 003961 398 ALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLN 477 (783)
Q Consensus 398 a~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~ 477 (783)
-.++|.-|++-+.+.- +.++....---+|...+++.+.++-..+..--+- ++.+..+-..|++ .++..+.++
T Consensus 352 ~e~eL~el~~~~~~i~----~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~---~e~L~~LrkdEl~-Are~l~~~~ 423 (570)
T COG4477 352 FEKELKELESVLDEIL----ENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKV---QEHLTSLRKDELE-ARENLERLK 423 (570)
T ss_pred HHHHHHHHHHHHHHHH----HHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHH---HHHHHHHHHHHHH-HHHHHHHHH
Confidence 3444555555443332 2333333334455555555555555444321111 2223333333332 345556666
Q ss_pred hhHHHhHHHHHhhhhhHhhHH----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhh
Q 003961 478 NKLANCMRTIEAKNVELLNLQ----TALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKL 553 (783)
Q Consensus 478 ~~L~~~mealeAKnvEl~NLQ----tALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KL 553 (783)
.+|...-+-++. +||= +-|.-|+.-..--+.+..+|....=.+..+++.++.|...+.....+.++++...
T Consensus 424 ~~l~eikR~mek-----~nLPGlPe~~l~l~~~~~~~i~~l~~eLse~pinm~~v~~~v~~a~~~m~~l~~~t~e~ve~a 498 (570)
T COG4477 424 SKLHEIKRYMEK-----SNLPGLPETFLSLFFTAGHEIQDLMKELSEVPINMEAVSALVDIATEDMNTLEDETEEVVENA 498 (570)
T ss_pred HHHHHHHHHHHH-----cCCCCCcHHHHHHHHhhhhHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555444444 6663 3333333322222233334433333355677777777777766666666666554
Q ss_pred hHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHH
Q 003961 554 SHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRL 588 (783)
Q Consensus 554 s~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL 588 (783)
.-+|..++=+ ++-+-+++.+-+.|.+|.+..
T Consensus 499 ~LaE~lIQY~----NRYRs~~~~v~~~l~eAe~lF 529 (570)
T COG4477 499 VLAEQLIQYG----NRYRSRNAEVAKSLNEAERLF 529 (570)
T ss_pred HHHHHHHHHH----HHHHhhhHHHHHHHHHHHHHH
Confidence 4444433331 223334444444555554443
No 285
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=50.02 E-value=53 Score=28.61 Aligned_cols=47 Identities=28% Similarity=0.446 Sum_probs=35.5
Q ss_pred HHHhHHHHH---HHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcc
Q 003961 223 RAAYESQTR---QLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLK 269 (783)
Q Consensus 223 qa~~~~~i~---~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk 269 (783)
|..++.+|+ .+..||.+=+.-.-+++.+||+-.++|..|.+++..|+
T Consensus 3 QsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~ 52 (61)
T PF08826_consen 3 QSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLK 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555554 35567777666666788999999999999999988775
No 286
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=49.74 E-value=1.8e+02 Score=30.25 Aligned_cols=109 Identities=17% Similarity=0.254 Sum_probs=68.1
Q ss_pred hhchhHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCcccchhHHHHHHHHHhhhHH--
Q 003961 214 EKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLS-- 291 (783)
Q Consensus 214 ~~~~~~aa~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~s-- 291 (783)
.+-.-++.....+..+|++|..|++.-......++..+...++.-.++++++..+.--+....--|..|-..|..=+.
T Consensus 42 ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d 121 (251)
T PF11932_consen 42 KRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELD 121 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334445555666777888888888877777777777777777777778888877766666666666666666654222
Q ss_pred ----------HHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhh
Q 003961 292 ----------ELRRLQMELNRREDGDANDVVENLKRVVATLEKEN 326 (783)
Q Consensus 292 ----------ei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn 326 (783)
.|.+|...+.. ..-...+.++++++.+.-|.
T Consensus 122 ~Pf~~~eR~~Rl~~L~~~l~~----~dv~~~ek~r~vlea~~~E~ 162 (251)
T PF11932_consen 122 LPFLLEERQERLARLRAMLDD----ADVSLAEKFRRVLEAYQIEM 162 (251)
T ss_pred CCCChHHHHHHHHHHHHhhhc----cCCCHHHHHHHHHHHHHHHH
Confidence 23333332222 11135567777777776664
No 287
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=49.54 E-value=4.9e+02 Score=30.47 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003961 379 QSLQKLEKDLKETCSERDKALQELTRLKQH 408 (783)
Q Consensus 379 ~slq~L~~eL~e~~~E~dKa~kEL~RLRqH 408 (783)
..+...+.++.+...|++++.+||..-|+.
T Consensus 88 tel~~a~~~k~~~e~er~~~~~El~~~r~e 117 (499)
T COG4372 88 TELGTAQGEKRAAETEREAARSELQKARQE 117 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555556666667777777666653
No 288
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.27 E-value=3.8e+02 Score=29.15 Aligned_cols=34 Identities=29% Similarity=0.333 Sum_probs=28.8
Q ss_pred hhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHH
Q 003961 475 GLNNKLANCMRTIEAKNVELLNLQTALGQYFAEI 508 (783)
Q Consensus 475 dL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~ 508 (783)
.+.+-+++..++++.+++|+.||-.-|.+|.++.
T Consensus 41 ~~~nS~~efar~lS~~~~e~e~l~~~l~etene~ 74 (246)
T KOG4657|consen 41 RSMNSLVEFARALSQSQVELENLKADLRETENEL 74 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566777899999999999999999999987
No 289
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=49.22 E-value=4.2e+02 Score=29.60 Aligned_cols=40 Identities=20% Similarity=0.241 Sum_probs=32.8
Q ss_pred HhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhh
Q 003961 551 VKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNR 590 (783)
Q Consensus 551 ~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ 590 (783)
..+.-.+..++-.|..+.+|+.++..++--|+.+=.-...
T Consensus 95 ~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~ 134 (307)
T PF10481_consen 95 SQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASS 134 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4566778888888999999999999999999877665554
No 290
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=49.18 E-value=1.5e+02 Score=33.24 Aligned_cols=63 Identities=19% Similarity=0.295 Sum_probs=41.4
Q ss_pred chhHHHHHHHHHhhhHHHHHHHHHHhcccccC-CcchHHHHHHHHHHHHHHhhhhhHhhHHHHH
Q 003961 275 TSIEITEMRKELNGKLSELRRLQMELNRREDG-DANDVVENLKRVVATLEKENNSLKMEKTELV 337 (783)
Q Consensus 275 ts~~~~~~~~el~ek~sei~rlq~~l~~~e~e-~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~ 337 (783)
.|..|+.+.++|++=..++.+.+.++-.+.+. +++--+-.+|+-|..|++|..++-..++=|+
T Consensus 292 ~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIGVle 355 (359)
T PF10498_consen 292 ASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRIGVLE 355 (359)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhheeh
Confidence 44556666666666555566655555544433 2334677899999999999998887776554
No 291
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=49.04 E-value=6.1e+02 Score=31.40 Aligned_cols=58 Identities=24% Similarity=0.300 Sum_probs=25.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHH
Q 003961 388 LKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLEN 446 (783)
Q Consensus 388 L~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEr 446 (783)
|....-..+--.+||.+|.+.+.++-++- .+..+-......|-+++|..+.++.+++.
T Consensus 239 le~i~~~~~dqlqel~~l~~a~~q~~ee~-~~~re~~~tv~~LqeE~e~Lqskl~~~~~ 296 (716)
T KOG4593|consen 239 LEAINKNMKDQLQELEELERALSQLREEL-ATLRENRETVGLLQEELEGLQSKLGRLEK 296 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33333334444555555555555554211 11122223334444555555555555444
No 292
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=48.74 E-value=89 Score=35.55 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=29.7
Q ss_pred cCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhc
Q 003961 305 DGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 305 ~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (783)
.+..++.+..|+..|+.|+.+...+..++..+++.+.-+.
T Consensus 66 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~ 105 (525)
T TIGR02231 66 SRPDPERLAELRKQIRELEAELRDLEDRGDALKALAKFLE 105 (525)
T ss_pred CcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667888888888888888888887777777765544
No 293
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=48.62 E-value=4.6e+02 Score=31.95 Aligned_cols=71 Identities=14% Similarity=0.153 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHh
Q 003961 518 LALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLN 589 (783)
Q Consensus 518 La~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~ 589 (783)
+..++.++..|.+.++..+.......++-++.+..+......+.+....+..-. .-..+|+.|..-+..|+
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~eLk 313 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEILELK 313 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Confidence 444555555555555555555444444433333333333333444433333333 44567777777777774
No 294
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=48.50 E-value=3.1e+02 Score=27.82 Aligned_cols=42 Identities=21% Similarity=0.341 Sum_probs=35.1
Q ss_pred ChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 003961 373 GKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQ 414 (783)
Q Consensus 373 ~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~ 414 (783)
.-+.+...|+.++.++.++-.+.|++.+.-.+.|++|.+...
T Consensus 28 E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~ 69 (159)
T PF05384_consen 28 EYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSR 69 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677778888888889999999999999999999988754
No 295
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=48.47 E-value=3.1e+02 Score=27.89 Aligned_cols=14 Identities=21% Similarity=0.354 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHh
Q 003961 576 KLRLAVEQSMTRLN 589 (783)
Q Consensus 576 kLR~ALeqsl~RL~ 589 (783)
+.|.-|..||+|+-
T Consensus 185 ~Ar~Ii~~AiQR~A 198 (201)
T PF12072_consen 185 KARRIIATAIQRYA 198 (201)
T ss_pred HHHHHHHHHHHhhc
Confidence 45667778888763
No 296
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=48.41 E-value=93 Score=36.32 Aligned_cols=51 Identities=22% Similarity=0.160 Sum_probs=35.2
Q ss_pred HHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhc
Q 003961 294 RRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 294 ~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (783)
--.+++.-|-+-.++.|+|.-|=..+..++++..++..+-..|.+..+++|
T Consensus 43 tpee~kalGiegDTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~ 93 (472)
T TIGR03752 43 SPEELKALGIEGDTPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQ 93 (472)
T ss_pred CcchhHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666677777787777766667777777777777777777777776
No 297
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=48.22 E-value=1.3e+02 Score=27.30 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhccc
Q 003961 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRKS 346 (783)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~ 346 (783)
....|+..|..+......|...+.++...+..+.+.
T Consensus 7 ~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l 42 (129)
T cd00890 7 QLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETL 42 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788888888888888888888888777777644
No 298
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=47.70 E-value=88 Score=28.61 Aligned_cols=43 Identities=26% Similarity=0.390 Sum_probs=26.0
Q ss_pred HhhhhhhhhhHHhHHHHHHHHHHHHHHHhhccCCcchhhhHHHH
Q 003961 561 AEGKGRANKLEEDNAKLRLAVEQSMTRLNRMSVDSDFLVDRRIV 604 (783)
Q Consensus 561 ~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ms~dsD~~VDRRIV 604 (783)
.++..++.+|..|-.+|-..|+++.-|+++.-. ...-|-+||+
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~-~~~Evs~rL~ 77 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEE-ANREVSRRLD 77 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHH
Confidence 556666677777777777777777776655442 2223445554
No 299
>PF15294 Leu_zip: Leucine zipper
Probab=47.59 E-value=4.3e+02 Score=29.21 Aligned_cols=142 Identities=20% Similarity=0.239 Sum_probs=69.2
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhH--HHHHhhhhhHhhHHHHH
Q 003961 424 SKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCM--RTIEAKNVELLNLQTAL 501 (783)
Q Consensus 424 ~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~m--ealeAKnvEl~NLQtAL 501 (783)
.++|+-|.++|+..+..+-.+|..+-..+-. -.+++.++.+|.......- ..+-.+..++..|..-+
T Consensus 131 ~kEi~rLq~EN~kLk~rl~~le~~at~~l~E-----------k~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~ 199 (278)
T PF15294_consen 131 NKEIDRLQEENEKLKERLKSLEKQATSALDE-----------KSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKM 199 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHH
Confidence 3678889999999999999998877655332 2334455555544111110 11122344666666666
Q ss_pred HHHHHHHHHh-hhhHHHHHHHHHHHHH-HHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHH
Q 003961 502 GQYFAEIEAK-GHLERELALAREESAK-LSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRL 579 (783)
Q Consensus 502 gqfqAE~EA~-ErLe~ELa~aree~a~-Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ 579 (783)
.....+.+.. ...+..+..+.+.+.. ....|+.-.+ +..+.+| +..|+.+ -..+.-.|.-+.+--+.+.-||+
T Consensus 200 a~lK~e~ek~~~d~~~~~k~L~e~L~~~KhelL~~Qeq-L~~aeke---LekKfqq-T~ay~NMk~~ltkKn~QiKeLRk 274 (278)
T PF15294_consen 200 AALKSELEKALQDKESQQKALEETLQSCKHELLRVQEQ-LSLAEKE---LEKKFQQ-TAAYRNMKEILTKKNEQIKELRK 274 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh-hhcchhh---HHHHhCc-cHHHHHhHHHHHhccHHHHHHHH
Confidence 6655554322 2222233333333222 1122222111 2222222 2234332 33344455555566666666776
Q ss_pred HH
Q 003961 580 AV 581 (783)
Q Consensus 580 AL 581 (783)
.|
T Consensus 275 rl 276 (278)
T PF15294_consen 275 RL 276 (278)
T ss_pred Hh
Confidence 55
No 300
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=47.23 E-value=4.6e+02 Score=29.44 Aligned_cols=47 Identities=30% Similarity=0.422 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhH
Q 003961 495 LNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEK 546 (783)
Q Consensus 495 ~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEK 546 (783)
.|=+.-+..|-+-+|+ ++..|+.++.++.=|-+-|.+|...++. +||
T Consensus 203 qne~~kv~k~~~Kqes---~eERL~QlqsEN~LLrQQLddA~~K~~~--kek 249 (305)
T PF14915_consen 203 QNEQDKVNKYIGKQES---LEERLSQLQSENMLLRQQLDDAHNKADN--KEK 249 (305)
T ss_pred HhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 3445555666666644 6888899999999999999999888765 555
No 301
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.15 E-value=59 Score=35.54 Aligned_cols=44 Identities=34% Similarity=0.379 Sum_probs=38.8
Q ss_pred HHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHH
Q 003961 465 EIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIE 509 (783)
Q Consensus 465 E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~E 509 (783)
-|+.|+++|..|++.|......|-.|+-.|.||-.- .+|+.+.|
T Consensus 226 ~i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad-~e~~~~~e 269 (305)
T KOG3990|consen 226 KIQKLKEEIARLKKLLHQKDQLILEKDKQISNLKAD-KEYQKELE 269 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcc-hhHHHHHH
Confidence 578999999999999999999999999999999765 77776653
No 302
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=46.89 E-value=2.3e+02 Score=25.85 Aligned_cols=36 Identities=22% Similarity=0.232 Sum_probs=25.8
Q ss_pred chHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhc
Q 003961 309 NDVVENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 309 ~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (783)
.+-...|...+..|+++...=..-...|+.+|..+.
T Consensus 7 ~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~ 42 (88)
T PF14389_consen 7 HERRSALEQEVAELQKQLQEEQDLRRALEKALGRSS 42 (88)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 345677888888888887776666777777776644
No 303
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=46.78 E-value=2.8e+02 Score=33.97 Aligned_cols=42 Identities=14% Similarity=0.195 Sum_probs=22.6
Q ss_pred ChhHHHHHHHHHHHhhhHHh-HhHhhhhHHHHhhhhHHHhhhh
Q 003961 70 DPEIERYKAEIKRLQESEAE-IKALSVNYAALLKEKEEQISRL 111 (783)
Q Consensus 70 ~~eie~ykaei~~lq~seae-ikals~nyaallkekedqi~rl 111 (783)
|.+|..+..++..|...+.+ +..+-......+....+.|...
T Consensus 221 p~~~~~ln~~l~~l~~~~~~e~~~il~~L~~~i~~~~~~l~~~ 263 (771)
T TIGR01069 221 PQAIVKLNNKLAQLKNEEECEIEKILRTLSEKVQEYLLELKFL 263 (771)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34588888888777765543 3333334444444444444333
No 304
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=46.76 E-value=91 Score=27.36 Aligned_cols=35 Identities=26% Similarity=0.319 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhccc
Q 003961 312 VENLKRVVATLEKENNSLKMEKTELVAALEKNRKS 346 (783)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~ 346 (783)
+..|+..+..+..+...|+.++.++...++.+...
T Consensus 7 ~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l 41 (106)
T PF01920_consen 7 FQELNQQLQQLEQQIQQLERQLRELELTLEELEKL 41 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45677777788888888888888888888888744
No 305
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=46.03 E-value=1.7e+02 Score=28.33 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=8.3
Q ss_pred HHHhhhhh----HhhHHHHHHHHHHHH
Q 003961 486 TIEAKNVE----LLNLQTALGQYFAEI 508 (783)
Q Consensus 486 aleAKnvE----l~NLQtALgqfqAE~ 508 (783)
++++++.+ |.+|+..|+.+-..+
T Consensus 6 ~l~as~~el~n~La~Le~slE~~K~S~ 32 (107)
T PF09304_consen 6 ALEASQNELQNRLASLERSLEDEKTSQ 32 (107)
T ss_dssp --------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhH
Confidence 34555443 445666666555444
No 306
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=45.72 E-value=4.4e+02 Score=28.82 Aligned_cols=155 Identities=15% Similarity=0.268 Sum_probs=72.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHH---HHhhHH----HHHhhhhhHHHhHHHHHhhhhhHhhHH
Q 003961 426 IIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSE---IQKSKE----IIDGLNNKLANCMRTIEAKNVELLNLQ 498 (783)
Q Consensus 426 ~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E---~~~ske----~iedL~~~L~~~mealeAKnvEl~NLQ 498 (783)
.+..+.+-+++++..|.+|+..+-.++-..-.++++..+- +.+..- .|--++..++-.+....+ .....++
T Consensus 170 ~~~~~~~~l~~leqRi~DL~~~~~va~Q~~pqir~iq~nN~~Li~ki~~a~~~TIP~~k~~~~ial~l~~Q--k~a~~~~ 247 (333)
T PF05816_consen 170 ELADLEQALFRLEQRIQDLQLSRQVAIQTAPQIRMIQNNNRELIEKIQSAITTTIPAWKNQLAIALALQRQ--KKALDAQ 247 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 4455666788999999999988877655544444444321 111111 111122222111111111 1223445
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHH
Q 003961 499 TALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLR 578 (783)
Q Consensus 499 tALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR 578 (783)
.|+....++. |.+-...+++-....+...-..--.+|..++==+.++..+........+++......+.....+.
T Consensus 248 ~av~~tTnel-----l~~nAe~lk~~~~~iak~~~~~~vdiEtL~~~~~~li~ti~e~~~i~~e~~~~r~~~~~~l~~l~ 322 (333)
T PF05816_consen 248 QAVNDTTNEL-----LRRNAEMLKQNSVEIAKEAERPVVDIETLKKAFQNLIETIEETDQIQEEGREKRAQAEQELEQLE 322 (333)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555544 22222222222222221100111112333322233555666666777777776666777777776
Q ss_pred HHHHHHHHH
Q 003961 579 LAVEQSMTR 587 (783)
Q Consensus 579 ~ALeqsl~R 587 (783)
.-|.+.|.+
T Consensus 323 ~~lk~~l~~ 331 (333)
T PF05816_consen 323 EELKQRLIR 331 (333)
T ss_pred HHHHHHHHh
Confidence 666666554
No 307
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=45.17 E-value=4.1e+02 Score=29.07 Aligned_cols=43 Identities=19% Similarity=0.296 Sum_probs=26.8
Q ss_pred hhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHH
Q 003961 468 KSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEA 510 (783)
Q Consensus 468 ~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA 510 (783)
=.+..++.+...|......+..+..+|..|+.-|.++..+.+.
T Consensus 218 P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~ 260 (344)
T PF12777_consen 218 PKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEE 260 (344)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666666666666666666544
No 308
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=44.54 E-value=1.3e+02 Score=29.27 Aligned_cols=76 Identities=16% Similarity=0.114 Sum_probs=37.2
Q ss_pred HHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhhccCCcchhhhHHH
Q 003961 528 LSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRMSVDSDFLVDRRI 603 (783)
Q Consensus 528 Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ms~dsD~~VDRRI 603 (783)
|.+.|......++.+..|...+...|......+.+++..+..+........+-+.+.++.........+..+++..
T Consensus 32 LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~~~~~~~~~~~~~~~~~ 107 (160)
T PF13094_consen 32 LERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQLDDSGVLELPELPQKSL 107 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcccccccccccccccccc
Confidence 3333333344444444443333333444455555555555555555555555556666665555544444444444
No 309
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=44.21 E-value=6.5e+02 Score=30.36 Aligned_cols=139 Identities=22% Similarity=0.229 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003961 381 LQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKM 460 (783)
Q Consensus 381 lq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~ 460 (783)
++.|..-|+.+-.|......+..-||+--+-.+.-++.-+ .-..-+||..|-.++.=-..|+..-+.....+
T Consensus 161 ~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y---~~~~KelrdtN~q~~s~~eel~~kt~el~~q~----- 232 (596)
T KOG4360|consen 161 LEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLY---GDCVKELRDTNTQARSGQEELQSKTKELSRQQ----- 232 (596)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 5678888888888888888887777776655543222111 01335666666555442222333223222222
Q ss_pred hchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 003961 461 MNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAE 540 (783)
Q Consensus 461 ~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie 540 (783)
.|+-++-.+|-|+++++-.|- +|..-|-.-| ++-++|.+.+..|+.-.....|.+-+-|.+|+..+-
T Consensus 233 ---Ee~skLlsql~d~qkk~k~~~-------~Ekeel~~~L---q~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk 299 (596)
T KOG4360|consen 233 ---EENSKLLSQLVDLQKKIKYLR-------HEKEELDEHL---QAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELK 299 (596)
T ss_pred ---HHHHHHHHHHHhhHHHHHHHH-------HHHHHHHHHH---HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777766552 1112222222 344666777777777777777777666666666553
No 310
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=44.11 E-value=5e+02 Score=29.03 Aligned_cols=40 Identities=28% Similarity=0.417 Sum_probs=24.2
Q ss_pred CCChhHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHH
Q 003961 371 FPGKEEMEQSLQKLEKDLKET-CSERDKALQELTRLKQHLI 410 (783)
Q Consensus 371 f~~kEeme~slq~L~~eL~e~-~~E~dKa~kEL~RLRqHLL 410 (783)
.|...++.+.+..+..-|..+ ..-.....+.|.+|+++|.
T Consensus 259 ~~~~~e~~q~Ld~l~~rL~~a~~~~L~~~~~~L~~L~~rL~ 299 (438)
T PRK00286 259 VPDRAELLQRLQQLQQRLARAMRRRLEQKRQRLDQLARRLK 299 (438)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 356666666666666655433 3345566667777777754
No 311
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=44.06 E-value=1.9e+02 Score=30.89 Aligned_cols=94 Identities=20% Similarity=0.310 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh-hhhhhh--------------------------hhhhHHH
Q 003961 375 EEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQ-EESEKM--------------------------DEDSKII 427 (783)
Q Consensus 375 Eeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~-Ee~ekm--------------------------ded~k~I 427 (783)
++++..++.|..++.++..=+.|++..|.++=+..-.... .+...| ..++.++
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siL 81 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSIL 81 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHH
Confidence 4566777777777777777777777777766533111000 010000 2456677
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhh
Q 003961 428 EELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNK 479 (783)
Q Consensus 428 eELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~ 479 (783)
.=+..+.+++|..+.+||.+|.+.. .++..++.+|+.|+++
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~-----------~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQ-----------QTISSLRREVESLRAD 122 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Confidence 7777889999999999999887652 2355566666666544
No 312
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=43.97 E-value=1.3e+02 Score=26.94 Aligned_cols=36 Identities=31% Similarity=0.345 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhccc
Q 003961 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRKS 346 (783)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~ 346 (783)
.-..|-.+|.+|+.|..-+++++.+|.+.+..|-.+
T Consensus 11 p~~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s 46 (79)
T PF06657_consen 11 PGEALSEVLKALQDEFGHMKMEHQELQDEYKQMDPS 46 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 456788999999999999999999999999998854
No 313
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=43.66 E-value=3.3e+02 Score=26.86 Aligned_cols=43 Identities=14% Similarity=0.126 Sum_probs=32.2
Q ss_pred hhhhhhHHhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHH
Q 003961 565 GRANKLEEDNAKLRLAVEQSMTRLNRMSVDSDFLVDRRIVIKLLVTY 611 (783)
Q Consensus 565 ~~~~KL~eDn~kLR~ALeqsl~RL~~ms~dsD~~VDRRIVtkLLLTY 611 (783)
.+-..|..-..-|...|+.+..+|..++. +++ +.++.+|+..+
T Consensus 70 ~rr~~L~~r~~~l~~v~~~a~~kL~~~~~--~~y--~~~l~~li~~~ 112 (188)
T PRK02292 70 AKRERLNARKEVLEDVRNQVEDEIASLDG--DKR--EELTKSLLDAA 112 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcch--hhH--HHHHHHHHHhc
Confidence 34446777778888899999999988873 344 56888888877
No 314
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=43.36 E-value=2.1e+02 Score=33.45 Aligned_cols=114 Identities=24% Similarity=0.249 Sum_probs=58.4
Q ss_pred HHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCcccchhHHHHHHHHHhhhHHHHHHHHHHhccc
Q 003961 224 AAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRR 303 (783)
Q Consensus 224 a~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~ 303 (783)
|.+...+.+|--++.+-.+.+..+-+++-+||++-+-.-.-|.-..=+|.-|--=|..+++|| .|||+.-.-.
T Consensus 321 arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkel-------ehlr~~kl~~ 393 (502)
T KOG0982|consen 321 ARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKEL-------EHLRRRKLVL 393 (502)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHh
Confidence 333333444444443444555556666666666665555555553333333433445554443 3444443333
Q ss_pred ccCCcc---hHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhc
Q 003961 304 EDGDAN---DVVENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 304 e~e~~~---~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (783)
+.-..+ .-+.-|-+.+++|+-.|-+|+.+-.+|.+-+-++.
T Consensus 394 a~p~rgrsSaRe~eleqevkrLrq~nr~l~eqneelngtilTls 437 (502)
T KOG0982|consen 394 ANPVRGRSSAREIELEQEVKRLRQPNRILSEQNEELNGTILTLS 437 (502)
T ss_pred hccccCchhHHHHHHHHHHHHhccccchhhhhhhhhhhhhhhHH
Confidence 322222 34555666677777777777777666666554444
No 315
>PF14728 PHTB1_C: PTHB1 C-terminus
Probab=43.05 E-value=4.3e+02 Score=29.92 Aligned_cols=117 Identities=18% Similarity=0.270 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHH
Q 003961 501 LGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLA 580 (783)
Q Consensus 501 LgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~A 580 (783)
|..|+.-+|.==.++.++....+++..++..+...+.++-..-|++.- +-|.+....+..-=..+.++-++.+.++..
T Consensus 199 l~~~~~~id~H~~lr~~~~~~~~~L~~~a~QfRaIQrrlL~r~kd~~p--~~l~~L~~LLe~ty~~l~~~~d~~~~~~~~ 276 (377)
T PF14728_consen 199 LQEYFEIIDQHFELRQELKELEEELDERAQQFRAIQRRLLTRFKDKNP--APLDNLDTLLEGTYRQLIALADEIEELQAN 276 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--cchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777776666677888888888888888888888887766666432 245567777776667788888999999999
Q ss_pred HHHHHHHHhhccCCcchhhhHHHHHHHHHHHHhcCCchHHHHHHHHhcCC
Q 003961 581 VEQSMTRLNRMSVDSDFLVDRRIVIKLLVTYFQRNHSKEVLDLMVRMLGF 630 (783)
Q Consensus 581 Leqsl~RL~~ms~dsD~~VDRRIVtkLLLTYf~R~~sKEVL~LMArMLgF 630 (783)
+.++-.+|+... +|+.-|+--+++ -..+...++-.+|+.
T Consensus 277 l~~a~~~L~~~~---------~Ll~~L~~l~~~--l~~~~~~~l~s~~~~ 315 (377)
T PF14728_consen 277 LKRAGASLSCAT---------QLLILLLKLRFN--LNEDDVELLESVFSP 315 (377)
T ss_pred HHHHhhhHHHHH---------HHHHHHHHhhcC--CCHHHHHHHHHHcCC
Confidence 999999998744 344333222233 344666666666654
No 316
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=42.80 E-value=6.8e+02 Score=30.15 Aligned_cols=62 Identities=21% Similarity=0.246 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003961 379 QSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLK 449 (783)
Q Consensus 379 ~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK 449 (783)
+....++++|...+.......+++++|+-.+-+.+.-. =+-.|+ ++ ++..+..+++.|+-+.
T Consensus 164 ~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~-l~~gE~----e~----L~~e~~rLsn~ekl~~ 225 (557)
T COG0497 164 QAWKQARRELEDLQEKERERAQRADLLQFQLEELEELN-LQPGED----EE----LEEERKRLSNSEKLAE 225 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCchH----HH----HHHHHHHHhhHHHHHH
Confidence 34556677777777777777788888887765554311 112222 33 3344566677777333
No 317
>PRK14154 heat shock protein GrpE; Provisional
Probab=42.68 E-value=1.7e+02 Score=30.74 Aligned_cols=44 Identities=27% Similarity=0.560 Sum_probs=37.2
Q ss_pred CCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 003961 370 SFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQ 414 (783)
Q Consensus 370 sf~~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~ 414 (783)
.||..++++..++.|++++.+.....-++..|..-+|.+ ..++.
T Consensus 50 ~~~~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR-~~kE~ 93 (208)
T PRK14154 50 EFPSREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKR-IEREK 93 (208)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 489999999999999999999988888888899999888 44443
No 318
>PRK11519 tyrosine kinase; Provisional
Probab=42.64 E-value=2.8e+02 Score=33.26 Aligned_cols=96 Identities=16% Similarity=0.196 Sum_probs=47.9
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCcccchhHHHHHHHHHhhhHHHHHHHHHHhc
Q 003961 222 ERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELN 301 (783)
Q Consensus 222 ~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~ 301 (783)
++.....-+.-|..+|..-+.++...+.+|++=+..|..+ .++.+ ...-+..+ .+|..++.+++....+|+
T Consensus 261 k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~v-------d~~~e-a~~~l~~~-~~l~~ql~~l~~~~~~l~ 331 (719)
T PRK11519 261 KSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSV-------DLPLE-AKAVLDSM-VNIDAQLNELTFKEAEIS 331 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-------CchHH-HHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3334444556666677777777777777776554444432 11110 00111111 345555555555555555
Q ss_pred ccccCCcchHHHHHHHHHHHHHHhhh
Q 003961 302 RREDGDANDVVENLKRVVATLEKENN 327 (783)
Q Consensus 302 ~~e~e~~~~~~~sLk~~~~~L~kEn~ 327 (783)
.+ -.+....|..|+..+..|+++..
T Consensus 332 ~~-y~~~hP~v~~l~~~~~~L~~~~~ 356 (719)
T PRK11519 332 KL-YTKEHPAYRTLLEKRKALEDEKA 356 (719)
T ss_pred HH-hcccCcHHHHHHHHHHHHHHHHH
Confidence 43 22334566667666655544433
No 319
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=42.47 E-value=8.3 Score=44.59 Aligned_cols=110 Identities=22% Similarity=0.379 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhhhhhhhHHHhH--HHHHhhchHHHHHHhhcccCcccchhHHHHHHHHHhhhHHHHH-------HH
Q 003961 226 YESQTRQLRMELEQQRNKFADVQLKL--QEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELR-------RL 296 (783)
Q Consensus 226 ~~~~i~~l~~el~~~~~k~~~~~~~l--qee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~-------rl 296 (783)
||.||..|+..|.--+.||.+.+++| ||+ ..++.+++==+.|.= .=+.|++---||-+.|| .+
T Consensus 374 YEqEI~~LkErL~~S~rkLeEyErrLl~QEq-qt~Kll~qyq~RLed-------SE~RLr~QQ~eKd~qmksII~RL~~v 445 (495)
T PF12004_consen 374 YEQEIQSLKERLRMSHRKLEEYERRLLSQEQ-QTQKLLLQYQARLED-------SEERLRRQQEEKDSQMKSIISRLMAV 445 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHhhhh-------hHHHHHHHhhhhHHHHHHHHhhhhhh
Confidence 99999999999999999999998887 444 344443322111110 01223333333333333 34
Q ss_pred HHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhc
Q 003961 297 QMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 297 q~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (783)
++||-+ |--+-...++.=+++|++-++....|...-..|..+|+++|
T Consensus 446 EeELrr-e~~~m~~~~~~kqrii~aQ~~~i~~Ldaan~Rl~sal~~lk 492 (495)
T PF12004_consen 446 EEELRR-EHAEMQAVLDHKQRIIDAQEKRIAALDAANSRLMSALTQLK 492 (495)
T ss_dssp ------------------------------------------------
T ss_pred hhhhhh-hHHHHhcccccchHHHHHhhhhccccccccccccccccccc
Confidence 455543 33334457889999999999999999999999999999988
No 320
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=42.32 E-value=1.2e+02 Score=26.80 Aligned_cols=56 Identities=21% Similarity=0.468 Sum_probs=35.3
Q ss_pred cccchhhHHhhHHhhhchhHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHh
Q 003961 200 KMQGKEKELADLLEEKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQR 256 (783)
Q Consensus 200 ~~~~~~~e~~d~le~~~~~~aa~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k 256 (783)
.+..++..++.|++|-. -+...+..|..-||+||......-..+..+..++.+-.+
T Consensus 6 ~l~EKDe~Ia~L~eEGe-kLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~ 61 (74)
T PF12329_consen 6 KLAEKDEQIAQLMEEGE-KLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEK 61 (74)
T ss_pred HHHhHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666777776544 366777888888888887766555555555555444333
No 321
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=42.01 E-value=3.4e+02 Score=26.68 Aligned_cols=107 Identities=24% Similarity=0.293 Sum_probs=68.6
Q ss_pred chhHHHHH-HHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCcccchhHHHHHHHHHhhhHHHHH
Q 003961 216 NRSLAAER-AAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELR 294 (783)
Q Consensus 216 ~~~~aa~q-a~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~ 294 (783)
..++||-. ++.+.+.++|..|+.+=..|.. -+++++..+.+..+.+|..+ .++..++.+++..|+
T Consensus 14 s~sfaA~~~~~v~~~l~~LEae~q~L~~kE~---~r~~~~k~~ae~a~~~L~~~-----------~~~~~~i~e~~~kl~ 79 (126)
T PF09403_consen 14 SISFAATATASVESELNQLEAEYQQLEQKEE---ARYNEEKQEAEAAEAELAEL-----------KELYAEIEEKIEKLK 79 (126)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred HHHHHcccchHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-----------HHHHHhHHHHHHHHH
Confidence 34556655 6777888877776665544443 34556666666777766654 577788888888776
Q ss_pred HHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHH
Q 003961 295 RLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVA 338 (783)
Q Consensus 295 rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a 338 (783)
.. .=+++=..+-...+...+.....|.++...-...+.+++.
T Consensus 80 ~~--~~~r~yk~eYk~llk~y~~~~~~L~k~I~~~e~iI~~fe~ 121 (126)
T PF09403_consen 80 QD--SKVRWYKDEYKELLKKYKDLLNKLDKEIAEQEQIIDNFEK 121 (126)
T ss_dssp HH--GGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 4556655556678888888888888888887777777653
No 322
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=41.97 E-value=2.3e+02 Score=24.43 Aligned_cols=38 Identities=13% Similarity=0.275 Sum_probs=25.6
Q ss_pred hhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhh
Q 003961 553 LSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNR 590 (783)
Q Consensus 553 Ls~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ 590 (783)
+.+.+..+...+..+..++.+....|..|.++.++...
T Consensus 54 ~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~ 91 (123)
T PF02050_consen 54 ISALEQAIQQQQQELERLEQEVEQAREELQEARRERKK 91 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666677777777777777777776665
No 323
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.42 E-value=7.4e+02 Score=30.18 Aligned_cols=95 Identities=31% Similarity=0.345 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHhhhhhHh-------hHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHH
Q 003961 311 VVENLKRVVATLEKENNSLKM-------EKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQK 383 (783)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~-------~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~ 383 (783)
-+.+|+.-+..+.++..++.+ +...+++.|..-.+..-+-. ++ |+..+ ....
T Consensus 367 hassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ddar-------------~~-----pe~~d---~i~~ 425 (654)
T KOG4809|consen 367 HASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDDAR-------------MN-----PEFAD---QIKQ 425 (654)
T ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh-------------cC-----hhhHH---HHHH
Confidence 355677777777777766654 34566777776664321110 11 22223 2334
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHH
Q 003961 384 LEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEEL 430 (783)
Q Consensus 384 L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeEL 430 (783)
|+.+...-.-|.-|+..|.+||=--|-+. +.+|-|-| +-|.||
T Consensus 426 le~e~~~y~de~~kaqaevdrlLeilkev---eneKnDkd-kkiael 468 (654)
T KOG4809|consen 426 LEKEASYYRDECGKAQAEVDRLLEILKEV---ENEKNDKD-KKIAEL 468 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhhhcccc-chhhhc
Confidence 44555555555666666666664444333 35566665 335554
No 324
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=41.22 E-value=3.9e+02 Score=26.94 Aligned_cols=106 Identities=21% Similarity=0.295 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHH
Q 003961 438 RAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERE 517 (783)
Q Consensus 438 R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~E 517 (783)
+..|..+++++...++....+ ..++......|.++..+...++ .+-+..|+ ..||.....-.+-...+...
T Consensus 36 e~~l~~a~~~~a~~~a~~~~l----e~~~~~~~~~~~~~~~~A~~Al---~~g~edLA--r~al~~k~~~e~~~~~l~~~ 106 (221)
T PF04012_consen 36 EEQLRKARQALARVMANQKRL----ERKLDEAEEEAEKWEKQAELAL---AAGREDLA--REALQRKADLEEQAERLEQQ 106 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH---HcCCHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555544322 3344444555555555544443 22222221 12333222222222445555
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHh
Q 003961 518 LALAREESAKLSEYLKNADQRAEVSRSEKEEILVK 552 (783)
Q Consensus 518 La~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~K 552 (783)
+..+...+.+|-..|......+...+.++..+..+
T Consensus 107 ~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar 141 (221)
T PF04012_consen 107 LDQAEAQVEKLKEQLEELEAKLEELKSKREELKAR 141 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556666666666666665555555555543
No 325
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=40.81 E-value=5.3e+02 Score=28.40 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=16.9
Q ss_pred HHHHHhhhhhHhhHHHHHHHHH
Q 003961 484 MRTIEAKNVELLNLQTALGQYF 505 (783)
Q Consensus 484 mealeAKnvEl~NLQtALgqfq 505 (783)
+..|++..+.+.=|.+.|+++.
T Consensus 158 l~DLesa~vkV~WLR~~L~Ei~ 179 (269)
T PF05278_consen 158 LKDLESAKVKVDWLRSKLEEIL 179 (269)
T ss_pred HHHHHHcCcchHHHHHHHHHHH
Confidence 3456777888888888888866
No 326
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=40.73 E-value=3.5e+02 Score=26.27 Aligned_cols=40 Identities=18% Similarity=0.356 Sum_probs=28.3
Q ss_pred ChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 003961 373 GKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEK 412 (783)
Q Consensus 373 ~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~ 412 (783)
.+.+++..+.+|...|......++.+.++-+.|+..+.-.
T Consensus 10 s~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L 49 (107)
T PF09304_consen 10 SQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSL 49 (107)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHH
Confidence 3457888888999988888888888877777777765444
No 327
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=40.65 E-value=88 Score=27.64 Aligned_cols=64 Identities=27% Similarity=0.375 Sum_probs=50.1
Q ss_pred HHHHHhhhHHHHHHHHH---HhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhccc
Q 003961 282 MRKELNGKLSELRRLQM---ELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKS 346 (783)
Q Consensus 282 ~~~el~ek~sei~rlq~---~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~ 346 (783)
+.+-|-||-..|..|+. .|+..+- ..+.++..|+..+..++++...|+.....++..+..++..
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el-~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKEL-KLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777778888884 4555332 3346899999999999999999999999999999988743
No 328
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=40.46 E-value=4.6e+02 Score=27.78 Aligned_cols=40 Identities=20% Similarity=0.374 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccC
Q 003961 314 NLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFP 353 (783)
Q Consensus 314 sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~ 353 (783)
.+...+..+..+...|+.++..++..+...+........+
T Consensus 132 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g 171 (301)
T PF14362_consen 132 SFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFG 171 (301)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3344444444444444444444554444444433333333
No 329
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=39.25 E-value=6.8e+02 Score=29.17 Aligned_cols=107 Identities=13% Similarity=0.073 Sum_probs=55.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh-hc--hH
Q 003961 388 LKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKM-MN--HS 464 (783)
Q Consensus 388 L~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~-~n--~~ 464 (783)
+.-++.|.+++...|..-|+.|++-..... +|+=. .+.+-+-..|..||..|-...+....+.. +. +-
T Consensus 244 v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~g--------vlDP~-~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sP 314 (434)
T PRK15178 244 ILWLENDVKSAQENLGAARLELLKIQHIQK--------DIDPK-ETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNP 314 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------CcChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 444556666666666666666666654222 12211 12444455677777777777666555533 22 33
Q ss_pred HHHhhHHHHHhhhhhHHHhHHHHHhhh-hhHhhHHHHHHHHH
Q 003961 465 EIQKSKEIIDGLNNKLANCMRTIEAKN-VELLNLQTALGQYF 505 (783)
Q Consensus 465 E~~~ske~iedL~~~L~~~mealeAKn-vEl~NLQtALgqfq 505 (783)
.+..++.+|..|.++++..-..+-+.. . ..|...+++|.
T Consensus 315 qV~~l~~rI~aLe~QIa~er~kl~~~~g~--~~la~~laeYe 354 (434)
T PRK15178 315 LIPRLSAKIKVLEKQIGEQRNRLSNKLGS--QGSSESLSLFE 354 (434)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhhcCCCC--CchhHHHHHHH
Confidence 555555555555555544333332110 0 14556677764
No 330
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=39.25 E-value=3.1e+02 Score=32.86 Aligned_cols=117 Identities=17% Similarity=0.194 Sum_probs=0.0
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCcccchhHHHHHHHHHhhhHHHHHHHH
Q 003961 218 SLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQ 297 (783)
Q Consensus 218 ~~aa~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq 297 (783)
.+...+..-..-+.-|..+|..-+.++...+..|++=++.|..+ |-.......-.--.+|+.++++++...
T Consensus 257 ~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~---------d~~~ea~~~l~~~~~l~~ql~~l~~~~ 327 (726)
T PRK09841 257 NIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSV---------DLNLEAKAVLEQIVNVDNQLNELTFRE 327 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---------CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhc
Q 003961 298 MELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 298 ~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (783)
.+|..+- .+.+..|..|+..+.+|+++...++.+...+-..-..++
T Consensus 328 ~~l~~~~-~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~ 373 (726)
T PRK09841 328 AEISQLY-KKDHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVL 373 (726)
T ss_pred HHHHHHh-cccCchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
No 331
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=38.64 E-value=2e+02 Score=27.24 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhc
Q 003961 312 VENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (783)
.+.|+.++..|..+...|...+.++...+++..
T Consensus 15 ~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~ 47 (140)
T PRK03947 15 LQALQAQIEALQQQLEELQASINELDTAKETLE 47 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666667777777777777777776666655
No 332
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=38.64 E-value=4e+02 Score=26.37 Aligned_cols=45 Identities=16% Similarity=0.170 Sum_probs=32.3
Q ss_pred hhhhhHHhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHhc
Q 003961 566 RANKLEEDNAKLRLAVEQSMTRLNRMSVDSDFLVDRRIVIKLLVTYFQR 614 (783)
Q Consensus 566 ~~~KL~eDn~kLR~ALeqsl~RL~~ms~dsD~~VDRRIVtkLLLTYf~R 614 (783)
+..++..-..-+...|+.+..+|..++.+ .|. -++.+|+...+..
T Consensus 72 r~~~l~ar~el~~~v~~~a~~~l~~~~~~--~Y~--~~l~~li~~a~~~ 116 (198)
T PRK03963 72 RRKRLAVQEELISEVLEAVRERLAELPED--EYF--ETLKALTKEAVEE 116 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHH--HHHHHHHHHHHHH
Confidence 44455566677888999999999887743 344 5888888876653
No 333
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=37.95 E-value=1.1e+02 Score=28.64 Aligned_cols=62 Identities=24% Similarity=0.318 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHhcCCch---HHHHHHHHhcCCCHHHHHHhhh
Q 003961 579 LAVEQSMTRLNRMSVDSDFLVDRRIVIKLLVTYFQRNHSK---EVLDLMVRMLGFSDEDKQRIGM 640 (783)
Q Consensus 579 ~ALeqsl~RL~~ms~dsD~~VDRRIVtkLLLTYf~R~~sK---EVL~LMArMLgFSDEEK~riGL 640 (783)
|||++-..+|.+-=...++.+--+.+-+-|+.||+-.... +||+||-+.+-.......-.++
T Consensus 6 RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~i 70 (98)
T PF14726_consen 6 RALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDI 70 (98)
T ss_pred HHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHc
Confidence 5899999999665556677775666666678899944443 8999999988776655554444
No 334
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=37.95 E-value=2e+02 Score=26.70 Aligned_cols=102 Identities=17% Similarity=0.246 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCC-----cccCCCCCCCCc--CCCCCC-----CCCCCChhHHH
Q 003961 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNE-----KIFPDASEYPSR--LDGMVS-----SESFPGKEEME 378 (783)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~-----k~~~da~e~~~r--~~d~~~-----~~sf~~kEeme 378 (783)
..+.|+..+..|.++.+.|...+.++...+..+...... .+.|=...+--+ ..+++. -..|-..-.+.
T Consensus 7 ~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~vE~~~~ 86 (129)
T cd00584 7 QLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYVEKDLE 86 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEEEecHH
Confidence 456788888899999999988888888887777644321 011110000000 001000 00111222445
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 003961 379 QSLQKLEKDLKETCSERDKALQELTRLKQHLIEK 412 (783)
Q Consensus 379 ~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~ 412 (783)
.....+.+.++......++..+++..|+.++-..
T Consensus 87 eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~ 120 (129)
T cd00584 87 EAIEFLDKKIEELTKQIEKLQKELAKLKDQINTL 120 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556777777777777778888888877775444
No 335
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=37.87 E-value=2.2e+02 Score=33.76 Aligned_cols=40 Identities=23% Similarity=0.369 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhh
Q 003961 228 SQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKS 267 (783)
Q Consensus 228 ~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~ 267 (783)
+|-.+|++++-.||+--..+.+.|++|+|+-..+|..|+.
T Consensus 528 ~Ek~ELkmd~lrerelreslekql~~ErklR~~~qkr~kk 567 (641)
T KOG3915|consen 528 LEKTELKMDFLRERELRESLEKQLAMERKLRAIVQKRLKK 567 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557899999999999999999999999999999987764
No 336
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=37.83 E-value=1.2e+02 Score=35.74 Aligned_cols=88 Identities=25% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHHHhHH
Q 003961 314 NLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKETCS 393 (783)
Q Consensus 314 sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e~~~ 393 (783)
.|+..++.|+++...-..++.+|...+..+..-+|....... ..+++.. ..|..+. |..|+..|...+.
T Consensus 88 ~L~~~le~l~~~~~eR~~~~~~L~~~~~~l~~~Lg~~~~~~~------~~~~~~~-~l~S~~~----l~~l~~~l~~L~~ 156 (619)
T PF03999_consen 88 KLRPQLEELRKEKEERMQEFKELQEQLEQLCEELGELPLCLN------PFDIDES-DLPSLEE----LEELRQHLQRLQE 156 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCc------cccCCCC-CCCcHHH----HHHHHHHHHHHHH
Confidence 366777777777777777777888888887765554433220 0011111 0111123 4567777777777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003961 394 ERDKALQELTRLKQHLIEK 412 (783)
Q Consensus 394 E~dKa~kEL~RLRqHLLe~ 412 (783)
|.+.-..++..|+..++..
T Consensus 157 e~~~R~~~v~~l~~~I~~l 175 (619)
T PF03999_consen 157 EKERRLEEVRELREEIISL 175 (619)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777777665543
No 337
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=37.56 E-value=3e+02 Score=31.82 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhhhhhHhhHHHHHHHHHHhc
Q 003961 315 LKRVVATLEKENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 315 Lk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (783)
+-+--..|..+-..|-.....|.--++.+|
T Consensus 204 ~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LR 233 (424)
T PF03915_consen 204 MESGKKKLSEESDRLLTKVDDLQDLVEDLR 233 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555666666666666666666
No 338
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=37.35 E-value=3e+02 Score=24.54 Aligned_cols=71 Identities=25% Similarity=0.274 Sum_probs=0.0
Q ss_pred CCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003961 370 SFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLK 449 (783)
Q Consensus 370 sf~~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK 449 (783)
+|-..+.+|...+.+-..+..++.|.+.+..+-..|. ...++|+++|+..+..-..|..-|.
T Consensus 2 ~~E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~------------------~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 2 SLELLEQLEEKIQQAVETIALLQMENEELKEKNNELK------------------EENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 003961 450 QTLAKQEEF 458 (783)
Q Consensus 450 ~~~a~qeel 458 (783)
.-..+.++.
T Consensus 64 ~LL~kl~~v 72 (72)
T PF06005_consen 64 SLLGKLEEV 72 (72)
T ss_dssp HHHHHHH--
T ss_pred HHHHhhhcC
No 339
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=36.99 E-value=7.2e+02 Score=28.77 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=14.8
Q ss_pred HHHHHHHhcCCCHHHHHHhhhcccCCCCCcccccc
Q 003961 620 VLDLMVRMLGFSDEDKQRIGMAQQGAGKGVVRGVL 654 (783)
Q Consensus 620 VL~LMArMLgFSDEEK~riGL~~q~~g~G~~rgv~ 654 (783)
..+|..+.-...++=|.. -|-. .+|+|++..++
T Consensus 468 ~~~L~~rf~~v~~~~r~~-~l~~-~~~~g~~~~~~ 500 (582)
T PF09731_consen 468 EAQLRNRFERVAPEVRRA-SLVP-PEGAGLLGHLL 500 (582)
T ss_pred HHHHHHHHHHHHHHHHHH-HhcC-CCCCCHHHHHH
Confidence 455666544443333333 3331 23556655443
No 340
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=36.52 E-value=6e+02 Score=28.16 Aligned_cols=81 Identities=19% Similarity=0.200 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHH
Q 003961 440 QILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELA 519 (783)
Q Consensus 440 ~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa 519 (783)
.+..+|...+++|..+..| ++|-..+-=+|+-||.+|...-+++-..+.++.....+| -....+-..|..++.
T Consensus 85 ~l~evEekyrkAMv~naQL----DNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~el---Er~K~~~d~L~~e~~ 157 (302)
T PF09738_consen 85 SLAEVEEKYRKAMVSNAQL----DNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIREL---ERQKRAHDSLREELD 157 (302)
T ss_pred HHHHHHHHHHHHHHHHhhh----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 3455555566666654443 555556666677777666665666666555554444333 223333333444444
Q ss_pred HHHHHHHH
Q 003961 520 LAREESAK 527 (783)
Q Consensus 520 ~aree~a~ 527 (783)
.+++.+..
T Consensus 158 ~Lre~L~~ 165 (302)
T PF09738_consen 158 ELREQLKQ 165 (302)
T ss_pred HHHHHHHH
Confidence 44444443
No 341
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=36.51 E-value=1.1e+03 Score=30.78 Aligned_cols=60 Identities=18% Similarity=0.310 Sum_probs=40.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHH
Q 003961 278 EITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEK 342 (783)
Q Consensus 278 ~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~ 342 (783)
++..++.-|.....||++.+.++.. ..+-..-+++.|...+.+...|+.+.++++..+=.
T Consensus 698 ~~~~~k~~l~~~~~El~~~~~~i~~-----~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~ 757 (1141)
T KOG0018|consen 698 DLEQLKRSLEQNELELQRTESEIDE-----FGPEISEIKRKLQNREGEMKELEERMNKVEDRIFK 757 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-----hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555566666777666651 22222378889999999999999999998887643
No 342
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=36.50 E-value=4.9e+02 Score=26.71 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=17.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003961 383 KLEKDLKETCSERDKALQELTRLKQHLIE 411 (783)
Q Consensus 383 ~L~~eL~e~~~E~dKa~kEL~RLRqHLLe 411 (783)
-|+..|..++...+.+..||.+|++-+--
T Consensus 85 lLReQLEq~~~~N~~L~~dl~klt~~~~~ 113 (182)
T PF15035_consen 85 LLREQLEQARKANEALQEDLQKLTQDWER 113 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666655433
No 343
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=36.27 E-value=2.6e+02 Score=27.81 Aligned_cols=57 Identities=23% Similarity=0.339 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHHH
Q 003961 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKE 390 (783)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e 390 (783)
.+...|..+..+..++.+|+.+.......|+.++++ . ...|+|...++.|+.+.+.
T Consensus 14 ~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~--------------------~----~d~eeLk~~i~~lq~~~~~ 69 (155)
T PF06810_consen 14 DIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKS--------------------A----KDNEELKKQIEELQAKNKT 69 (155)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------------c----CCHHHHHHHHHHHHHHHHH
Confidence 345577888888899999999999999999999942 1 2677887777777777765
Q ss_pred h
Q 003961 391 T 391 (783)
Q Consensus 391 ~ 391 (783)
.
T Consensus 70 ~ 70 (155)
T PF06810_consen 70 A 70 (155)
T ss_pred H
Confidence 5
No 344
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=36.08 E-value=3.5e+02 Score=24.85 Aligned_cols=22 Identities=32% Similarity=0.270 Sum_probs=9.3
Q ss_pred HHHHHHHhhhhhhhhhHHhHHH
Q 003961 555 HSEKMLAEGKGRANKLEEDNAK 576 (783)
Q Consensus 555 ~~E~~l~e~K~~~~KL~eDn~k 576 (783)
.....+..++..+.++.+.+..
T Consensus 85 ~l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 85 KLKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333
No 345
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=35.82 E-value=8.7 Score=35.12 Aligned_cols=43 Identities=33% Similarity=0.461 Sum_probs=29.9
Q ss_pred ccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhc
Q 003961 302 RREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 302 ~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (783)
|-...++++.++.|-..+..|.++|..|+.+..+|...|...+
T Consensus 17 GYd~~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~ 59 (131)
T PF05103_consen 17 GYDPDEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELR 59 (131)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-----
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 4455566678888888888888888888888888877776665
No 346
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=35.73 E-value=4.4e+02 Score=25.91 Aligned_cols=43 Identities=19% Similarity=0.316 Sum_probs=29.6
Q ss_pred CChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 003961 372 PGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQ 414 (783)
Q Consensus 372 ~~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~ 414 (783)
|.-.++--.++.|...|...-..+.+...+|.-....|-+.+.
T Consensus 6 p~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~ 48 (119)
T COG1382 6 PEVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEK 48 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455566667778888887777777777777776666655543
No 347
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=35.18 E-value=2.5e+02 Score=25.99 Aligned_cols=88 Identities=16% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCC-----CCCCCCCCCChhHHHHHHHHHHH
Q 003961 312 VENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLD-----GMVSSESFPGKEEMEQSLQKLEK 386 (783)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~-----d~~~~~sf~~kEeme~slq~L~~ 386 (783)
.+.++..+..+.-+...|+.++++.+-.++.+. .+.+|+.=+-.=+. +.+. ...+++..+..++.
T Consensus 12 ~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~-----~l~~d~~vyk~VG~vlv~~~~~e-----~~~~l~~r~e~ie~ 81 (110)
T TIGR02338 12 LQQLQQQLQAVATQKQQVEAQLKEAEKALEELE-----RLPDDTPVYKSVGNLLVKTDKEE-----AIQELKEKKETLEL 81 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCcchhHHHhchhhheecHHH-----HHHHHHHHHHHHHH
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Q 003961 387 DLKETCSERDKALQELTRLKQHL 409 (783)
Q Consensus 387 eL~e~~~E~dKa~kEL~RLRqHL 409 (783)
.++......+...+.+..+.++|
T Consensus 82 ~i~~lek~~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 82 RVKTLQRQEERLREQLKELQEKI 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 348
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=34.98 E-value=4.3e+02 Score=25.59 Aligned_cols=60 Identities=20% Similarity=0.227 Sum_probs=37.3
Q ss_pred hHHhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHhcCCchHHHHHHHHhcCCCHHHHHH
Q 003961 570 LEEDNAKLRLAVEQSMTRLNRMSVDSDFLVDRRIVIKLLVTYFQRNHSKEVLDLMVRMLGFSDEDKQR 637 (783)
Q Consensus 570 L~eDn~kLR~ALeqsl~RL~~ms~dsD~~VDRRIVtkLLLTYf~R~~sKEVL~LMArMLgFSDEEK~r 637 (783)
|..-..-+...++.+..+|+.++.+.|.|. .++.+|+...+..-..+++ ++-+++.+...
T Consensus 67 l~~k~~~i~~v~~~~~~~L~~~~~~~~~Y~--~~L~~li~~~~~~~~~~~~------~v~~~~~D~~~ 126 (198)
T PF01991_consen 67 LEAKQEIIDEVFEEVKEKLKSFSKDPDDYK--KFLKKLIEEAAEKLGEGEV------IVYVNKKDLEL 126 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCC-THH--HHHHHHHHHHHHCCTTSCE------EEEECCHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHHHHHhcCCce------EEecccchHHH
Confidence 444455567788889999999886663343 6777777777664444333 33455555543
No 349
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=34.74 E-value=4.6e+02 Score=25.90 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=6.3
Q ss_pred hhHHHHHHHHHHHH
Q 003961 599 VDRRIVIKLLVTYF 612 (783)
Q Consensus 599 VDRRIVtkLLLTYf 612 (783)
||++--..|+-.|+
T Consensus 142 ~~~~~~~~lid~~~ 155 (161)
T COG0711 142 VDEAAQKDLIDAFI 155 (161)
T ss_pred hhHHHHHHHHHHHH
Confidence 44444444444443
No 350
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=34.57 E-value=3.9e+02 Score=31.76 Aligned_cols=47 Identities=28% Similarity=0.267 Sum_probs=25.4
Q ss_pred hHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHH
Q 003961 463 HSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIE 509 (783)
Q Consensus 463 ~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~E 509 (783)
-.+++.+++++++|++...+.-..+..-..++.+....+.+=+++.+
T Consensus 211 p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk 257 (555)
T TIGR03545 211 PLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELK 257 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34666666767766666655555555544444444444444444443
No 351
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=33.65 E-value=3.3e+02 Score=27.79 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=9.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Q 003961 385 EKDLKETCSERDKALQELTRLKQH 408 (783)
Q Consensus 385 ~~eL~e~~~E~dKa~kEL~RLRqH 408 (783)
...+.++..+...+..++..|+.+
T Consensus 126 ~~~i~~L~~e~~~L~~~~~~l~~~ 149 (189)
T PF10211_consen 126 EEEIEELEEEKEELEKQVQELKNK 149 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444
No 352
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=33.59 E-value=65 Score=26.38 Aligned_cols=29 Identities=38% Similarity=0.478 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHH
Q 003961 312 VENLKRVVATLEKENNSLKMEKTELVAAL 340 (783)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L 340 (783)
-++|+...++|.+||..|..++..|-..|
T Consensus 14 yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 14 YDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666666666666666666666665554
No 353
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=33.48 E-value=8.2e+02 Score=28.40 Aligned_cols=19 Identities=5% Similarity=0.461 Sum_probs=15.1
Q ss_pred HHHHhhHHHHHhhhhhHHH
Q 003961 464 SEIQKSKEIIDGLNNKLAN 482 (783)
Q Consensus 464 ~E~~~ske~iedL~~~L~~ 482 (783)
..+.++...||+|+++++.
T Consensus 220 ~kVdDLQD~VE~LRkDV~~ 238 (424)
T PF03915_consen 220 TKVDDLQDLVEDLRKDVVQ 238 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888877
No 354
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=33.43 E-value=5.8e+02 Score=26.67 Aligned_cols=101 Identities=19% Similarity=0.208 Sum_probs=51.3
Q ss_pred HHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCc
Q 003961 282 MRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSR 361 (783)
Q Consensus 282 ~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r 361 (783)
+.--+....+.|..+..+|.+.... +..-+..+..++++..+|......|..+.+.+... +.++.
T Consensus 15 ~~~~~~~l~~~~e~~~~~L~~~~~~-----~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~-~~~l~--------- 79 (264)
T PF06008_consen 15 AWPAPYKLLSSIEDLTNQLRSYRSK-----LNPQKQQLDPLEKELESLEQDVENLQEKATKVSRK-AQQLN--------- 79 (264)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhcc-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH---------
Confidence 3344445566677777777665432 22344455555666666666666666655554421 11111
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003961 362 LDGMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQ 407 (783)
Q Consensus 362 ~~d~~~~~sf~~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRq 407 (783)
...+.+....+.|...+...+..+.-....+..|-.
T Consensus 80 ----------~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~ 115 (264)
T PF06008_consen 80 ----------NNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE 115 (264)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 123344445555555555555555555555555544
No 355
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=33.21 E-value=3.2e+02 Score=23.54 Aligned_cols=94 Identities=16% Similarity=0.252 Sum_probs=56.2
Q ss_pred HHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHHHhHHHH
Q 003961 316 KRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKETCSER 395 (783)
Q Consensus 316 k~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e~~~E~ 395 (783)
++.+.....+......++..|...+......+.... .. ++. ...-.+..-+..|...+.....++
T Consensus 4 ~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~-~~----------~s~----~~~~~~~~~~~~l~~~i~~~~~~~ 68 (123)
T PF02050_consen 4 EQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQ-QG----------VSV----AQLRNYQRYISALEQAIQQQQQEL 68 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------SG----------GGH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CC----------CCH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555543322222 10 001 133356666788888999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHH
Q 003961 396 DKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRE 432 (783)
Q Consensus 396 dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELre 432 (783)
+.+.+++.+.|..|++..- +.+.++-|.+
T Consensus 69 ~~~~~~~~~~r~~l~~a~~--------~~k~~e~L~e 97 (123)
T PF02050_consen 69 ERLEQEVEQAREELQEARR--------ERKKLEKLKE 97 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence 9999999999999988753 2345555654
No 356
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=33.15 E-value=1.9e+02 Score=31.53 Aligned_cols=44 Identities=32% Similarity=0.406 Sum_probs=36.7
Q ss_pred HHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHH
Q 003961 538 RAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAV 581 (783)
Q Consensus 538 ~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~AL 581 (783)
..+...+||++++..|...+..+.+++.++..|+.+++.|.+-|
T Consensus 143 kl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~ 186 (290)
T COG4026 143 KLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEML 186 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556688888988888899999999999999999999887755
No 357
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=32.95 E-value=7.6e+02 Score=27.84 Aligned_cols=29 Identities=10% Similarity=0.101 Sum_probs=14.3
Q ss_pred hhhhhhhhhHHhHHHHHHHHHHHHHHHhh
Q 003961 562 EGKGRANKLEEDNAKLRLAVEQSMTRLNR 590 (783)
Q Consensus 562 e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ 590 (783)
++...+..++.+...++..|..+-.+|.+
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l~~ 316 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDSQK 316 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33344444555555555555555444433
No 358
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=32.88 E-value=4.9e+02 Score=28.19 Aligned_cols=33 Identities=12% Similarity=0.119 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchH
Q 003961 228 SQTRQLRMELEQQRNKFADVQLKLQEEQRLNES 260 (783)
Q Consensus 228 ~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~ 260 (783)
..+.-+..+|.+-+.++...+.+|++=+..|..
T Consensus 170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~ 202 (362)
T TIGR01010 170 DTIAFAENEVKEAEQRLNATKAELLKYQIKNKV 202 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 445667777777778888888777765555543
No 359
>PTZ00234 variable surface protein Vir12; Provisional
Probab=32.87 E-value=50 Score=37.81 Aligned_cols=14 Identities=21% Similarity=0.304 Sum_probs=10.9
Q ss_pred ccccccCCCCCCcc
Q 003961 763 STVPLSSSKSNSRL 776 (783)
Q Consensus 763 stvpltss~~~~~~ 776 (783)
++||++..++++++
T Consensus 339 ~~~~~~~~~~~~~l 352 (433)
T PTZ00234 339 PTAPEVNPDTSNFL 352 (433)
T ss_pred CCCCcCCCCCCchh
Confidence 55999988887765
No 360
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=32.56 E-value=7.2e+02 Score=30.60 Aligned_cols=47 Identities=19% Similarity=0.295 Sum_probs=24.8
Q ss_pred ChhHHHHHHHHHHHhhhHH-hHhHhhhhHHHHhhhhHHHhhhhhcccc
Q 003961 70 DPEIERYKAEIKRLQESEA-EIKALSVNYAALLKEKEEQISRLNGEYG 116 (783)
Q Consensus 70 ~~eie~ykaei~~lq~sea-eikals~nyaallkekedqi~rl~~eng 116 (783)
|.++..+..+|..|..-+. ++..+=..+...+....+.|..+..--|
T Consensus 226 p~~~~~ln~~l~~l~~~~~~~~~~il~~l~~~i~~~~~~l~~~~~~l~ 273 (782)
T PRK00409 226 PQSVVELNNEIRELRNKEEQEIERILKELSAKVAKNLDFLKFLNKIFD 273 (782)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777777766654433 3333334455555555555555444333
No 361
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=32.49 E-value=3.6e+02 Score=26.47 Aligned_cols=77 Identities=19% Similarity=0.353 Sum_probs=61.0
Q ss_pred HhhHHhhhchhHHHHHHHhHHHHHHHHHHHHHhhhh----hhhHHHhHHHHHhhchHHHHHHhhcccCcccchhHHHHHH
Q 003961 208 LADLLEEKNRSLAAERAAYESQTRQLRMELEQQRNK----FADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMR 283 (783)
Q Consensus 208 ~~d~le~~~~~~aa~qa~~~~~i~~l~~el~~~~~k----~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~ 283 (783)
|.||.==-+|+|+-+-+....++.++-..|..-+++ +.++-.+|++-..+.+.+++++..++-|-+.+-.++..+|
T Consensus 30 ~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~ 109 (126)
T PF07889_consen 30 FSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQ 109 (126)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 677777788888888888888888887777766654 4677788888888999999998888877777777776666
Q ss_pred H
Q 003961 284 K 284 (783)
Q Consensus 284 ~ 284 (783)
.
T Consensus 110 ~ 110 (126)
T PF07889_consen 110 Q 110 (126)
T ss_pred H
Confidence 4
No 362
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=32.37 E-value=2.3e+02 Score=32.01 Aligned_cols=85 Identities=20% Similarity=0.247 Sum_probs=60.7
Q ss_pred HHHhhcccCcccchhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHH
Q 003961 263 DELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEK 342 (783)
Q Consensus 263 e~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~ 342 (783)
+++-.|--.+-+...+++.++.|-|.--.+|..+. . ..++ ..+.|+.....|+++...|+.+..++++++..
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~----~-~~~~---~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAK----G-QKKD---KIEEIKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----c-cCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445566777777777777777776522 1 1111 15678888888888889999999999999998
Q ss_pred hcccCCCcccCCC
Q 003961 343 NRKSSNEKIFPDA 355 (783)
Q Consensus 343 ~r~~~~~k~~~da 355 (783)
.-..+++-+.||.
T Consensus 102 ~~~~lPN~~~~~v 114 (418)
T TIGR00414 102 KLLSIPNIPHESV 114 (418)
T ss_pred HHHhCCCCCCccC
Confidence 8888899888876
No 363
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=32.13 E-value=3.5e+02 Score=23.73 Aligned_cols=58 Identities=7% Similarity=0.197 Sum_probs=24.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhH
Q 003961 427 IEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCM 484 (783)
Q Consensus 427 IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~m 484 (783)
+..++..++++...+..++..+..-..+.+..+.-...+...+...+++.+..|...+
T Consensus 9 l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l 66 (127)
T smart00502 9 LTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDL 66 (127)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555554444433233333333333444444444444444444433
No 364
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=31.71 E-value=1.4e+02 Score=27.63 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=16.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Q 003961 385 EKDLKETCSERDKALQELTRLKQH 408 (783)
Q Consensus 385 ~~eL~e~~~E~dKa~kEL~RLRqH 408 (783)
++|+.+...-..+..+||+.||+|
T Consensus 42 E~E~~~l~~~l~~~E~eL~~LrkE 65 (85)
T PF15188_consen 42 EKELNELKEKLENNEKELKLLRKE 65 (85)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHh
Confidence 345555555577778888888874
No 365
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=31.67 E-value=88 Score=26.15 Aligned_cols=33 Identities=33% Similarity=0.467 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhc
Q 003961 312 VENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (783)
++.|...+..|..+|..|+.++..|...+..++
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555566666666666666555555544
No 366
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=31.44 E-value=9.2e+02 Score=28.36 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHhcCCCHHH
Q 003961 602 RIVIKLLVTYFQRNHSKEVLDLMVRMLGFSDED 634 (783)
Q Consensus 602 RIVtkLLLTYf~R~~sKEVL~LMArMLgFSDEE 634 (783)
+...+++++=++|--+.-+-+--+++..+-.+|
T Consensus 182 ~~a~~i~~~aiqr~a~~~~~e~~~~~v~lp~d~ 214 (514)
T TIGR03319 182 KKAKEILATAIQRYAGDHVAETTVSVVNLPNDE 214 (514)
T ss_pred HHHHHHHHHHHHhccchhhhhheeeeEEcCChh
Confidence 345667777888777776666666666654443
No 367
>PRK14127 cell division protein GpsB; Provisional
Probab=31.40 E-value=1.9e+02 Score=27.78 Aligned_cols=46 Identities=15% Similarity=0.303 Sum_probs=37.7
Q ss_pred cccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhccc
Q 003961 301 NRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKS 346 (783)
Q Consensus 301 ~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~ 346 (783)
-|-..+++++-++.+-..+++|.+||..|+.+...|+.+|..++..
T Consensus 21 RGYd~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~ 66 (109)
T PRK14127 21 RGYDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQ 66 (109)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555666777888888888899999999999999999999988853
No 368
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=31.38 E-value=7.3e+02 Score=27.17 Aligned_cols=150 Identities=21% Similarity=0.268 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003961 374 KEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLA 453 (783)
Q Consensus 374 kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a 453 (783)
.|.++..+..|+..+....+.+.++..||.-|+-| |+-|=-.|.=-=..+...|-+.-+.+..++..|..-++..++
T Consensus 76 eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TY---kD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~ 152 (258)
T PF15397_consen 76 EEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTY---KDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQMELA 152 (258)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhchHHHHhhHHHHHhhhhhHHH-----hHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 003961 454 KQEEFKMMNHSEIQKSKEIIDGLNNKLAN-----CMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKL 528 (783)
Q Consensus 454 ~qeelk~~n~~E~~~ske~iedL~~~L~~-----~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~L 528 (783)
... .+....-+.+...++. |=.++-.+-.+..=++.-+..|--++ ..|+.++..++.++-.|
T Consensus 153 ~l~----------~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i---~el~e~I~~L~~eV~~L 219 (258)
T PF15397_consen 153 SLS----------RKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEI---DELEEEIPQLRAEVEQL 219 (258)
T ss_pred HHH----------HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhHH
Q 003961 529 SEYLKNADQRA 539 (783)
Q Consensus 529 s~~Lk~a~q~i 539 (783)
......-...|
T Consensus 220 ~~~~~~~Re~i 230 (258)
T PF15397_consen 220 QAQAQDPREVI 230 (258)
T ss_pred HHhhcchHHHh
No 369
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=31.37 E-value=1.9e+02 Score=31.47 Aligned_cols=78 Identities=26% Similarity=0.365 Sum_probs=45.7
Q ss_pred HHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCcccchhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHH
Q 003961 236 ELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENL 315 (783)
Q Consensus 236 el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sL 315 (783)
++..-++-..+++-||+|.++-|+-+.++|.. +..|+++-...|++|.-+++ .|
T Consensus 129 ~~~d~ke~~ee~kekl~E~~~EkeeL~~elee--------------le~e~ee~~erlk~le~E~s------------~L 182 (290)
T COG4026 129 EYMDLKEDYEELKEKLEELQKEKEELLKELEE--------------LEAEYEEVQERLKRLEVENS------------RL 182 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH------------HH
Confidence 34444555667778888888888776665543 33444444445555555544 34
Q ss_pred HHHHHHHHHhhhhhHhhHHHHHHH
Q 003961 316 KRVVATLEKENNSLKMEKTELVAA 339 (783)
Q Consensus 316 k~~~~~L~kEn~tlk~~~~eL~a~ 339 (783)
-.++..|.-+-..|+....+|+..
T Consensus 183 eE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 183 EEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHhchhHHHHHHHHHHHhccc
Confidence 455555555556666666666554
No 370
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=31.16 E-value=5.6e+02 Score=25.82 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 003961 376 EMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKA 413 (783)
Q Consensus 376 eme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E 413 (783)
+|+..+..++..+........++.+++..+..-.-.++
T Consensus 34 d~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~ 71 (221)
T PF04012_consen 34 DMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWE 71 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555544444443
No 371
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=30.95 E-value=3.7e+02 Score=24.07 Aligned_cols=29 Identities=28% Similarity=0.438 Sum_probs=23.4
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003961 422 EDSKIIEELRENNEYQRAQILHLENVLKQ 450 (783)
Q Consensus 422 ed~k~IeELreenE~~R~~Is~lEraLK~ 450 (783)
+.+..|+.|+-+|=..+-.|-.||..|.+
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~~ 32 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQK 32 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 44567888988888889999998888874
No 372
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.88 E-value=1e+03 Score=29.24 Aligned_cols=31 Identities=13% Similarity=0.242 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003961 379 QSLQKLEKDLKETCSERDKALQELTRLKQHL 409 (783)
Q Consensus 379 ~slq~L~~eL~e~~~E~dKa~kEL~RLRqHL 409 (783)
.++..+..-|+++-.++++..+..++.+.|+
T Consensus 709 ~Q~~~iqsiL~~L~~~i~~~~k~VK~i~~~v 739 (741)
T KOG4460|consen 709 YQRKCIQSILKELGEHIREMVKQVKDIRNHV 739 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666678888888999999999999885
No 373
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=30.82 E-value=5.4e+02 Score=25.52 Aligned_cols=16 Identities=13% Similarity=0.204 Sum_probs=7.0
Q ss_pred HHHHhhhhhHHHhHHH
Q 003961 471 EIIDGLNNKLANCMRT 486 (783)
Q Consensus 471 e~iedL~~~L~~~mea 486 (783)
..++.+.+++.+.+..
T Consensus 49 ~~l~~R~~~I~~~l~~ 64 (167)
T PRK08475 49 NFYKSRINKISKRLEE 64 (167)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 374
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=30.55 E-value=9e+02 Score=30.92 Aligned_cols=147 Identities=22% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHH
Q 003961 440 QILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELA 519 (783)
Q Consensus 440 ~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa 519 (783)
+|-++=+.||+..+..++.+.-+..-+..+ +..+..-.+|++.-.-+.+....+.||++|+.-.-.=+|++ +|+++|.
T Consensus 182 ~iNq~l~klkq~~~ei~e~eke~a~yh~lL-e~r~~~~~rl~~l~~elr~~~~~i~~~~~~v~l~~~lqE~k-~Leqel~ 259 (984)
T COG4717 182 QINQLLEKLKQERNEIDEAEKEYATYHKLL-ESRRAEHARLAELRSELRADRDHIRALRDAVELWPRLQEWK-QLEQELT 259 (984)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHhc
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHH---HHHHHHHHHHHHHhhc
Q 003961 520 LAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNA---KLRLAVEQSMTRLNRM 591 (783)
Q Consensus 520 ~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~---kLR~ALeqsl~RL~~m 591 (783)
.-+++.+..-. +.-.+.+...-.+.-..+.++..-..+++.+...++|.-+.+ +.+.+|++.+--...|
T Consensus 260 ~~~~e~~~fP~---DGvlrlEk~~ahL~~~ea~i~~~~vrlae~~d~~~~LiP~ke~vl~~~~~l~q~~s~i~~~ 331 (984)
T COG4717 260 RRREELATFPR---DGVLRLEKREAHLQKTEAEIDALLVRLAELKDLASQLIPAKEAVLQALVRLHQQLSEIKAS 331 (984)
T ss_pred cchhhhccCCc---hhHHHHHHHHHhhhhhhhhhHHHHHHHHhhhHHHHhccchHHHHHHHHHHHHHHHHHHHHH
No 375
>PF04518 Effector_1: Effector from type III secretion system; InterPro: IPR007606 This family contains several uncharacterised chlamydial proteins.
Probab=30.36 E-value=60 Score=36.85 Aligned_cols=94 Identities=22% Similarity=0.155 Sum_probs=73.5
Q ss_pred CCChhHHHHHHHHHHHhhhHHhHhHhhhhHHHHhhhhHHHhhhhhccccchhhhhhhhHHHHHhhhcCCCccCC------
Q 003961 68 PHDPEIERYKAEIKRLQESEAEIKALSVNYAALLKEKEEQISRLNGEYGLLKQNLDATNAALNAFRNGNSKASS------ 141 (783)
Q Consensus 68 ~~~~eie~ykaei~~lq~seaeikals~nyaallkekedqi~rl~~engslk~nl~~t~~al~~~r~~~~~~s~------ 141 (783)
.+..|+++.+.+|++-+...+.|+.+..+--+.=+=-.+|..+|...=-+.+.+|+++.--|.+-..-.+..+-
T Consensus 204 ~l~~E~~~~~~di~~~~~A~~~l~~~~~~V~~d~~lT~~Qk~~l~d~l~~Y~~~l~~i~~qL~~L~~~L~~L~~~~~~~~ 283 (379)
T PF04518_consen 204 KLEKEREQIRRDIKSCERAKAVLNKQLARVKADAKLTSEQKSELLDSLNNYKDNLNAISNQLSLLQSLLAPLSIQGVSDP 283 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceeecCCCC
Confidence 56789999999999999999999999999888888888999999999899999999988877766554433332
Q ss_pred ---CCcccCCCCCCCCCcccchh
Q 003961 142 ---NGINIPKGSGDLSPSRQHKL 161 (783)
Q Consensus 142 ---n~~~~~kg~~d~sp~r~~~~ 161 (783)
-+.+.|+|..|+++.+..-.
T Consensus 284 ~~~~~~F~i~g~~~~Wi~~L~~l 306 (379)
T PF04518_consen 284 DEVDGAFKITGGSDDWIPTLQIL 306 (379)
T ss_pred CCcCCceEEEecchhHHHHHHHH
Confidence 34556666666666554433
No 376
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=30.29 E-value=5.1e+02 Score=27.38 Aligned_cols=110 Identities=16% Similarity=0.245 Sum_probs=0.0
Q ss_pred CCCCCC--CChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHH
Q 003961 366 VSSESF--PGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILH 443 (783)
Q Consensus 366 ~~~~sf--~~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~ 443 (783)
.+.|.| +..++.| .-.|+++|.++-....++.++..+- .......-.|-. .|+.+=++|-+.++..
T Consensus 83 ~~gTdfS~~~~~dwE--evrLkrELa~Le~~l~~~~~~~~~~-----~~~~~~~~~lvk-----~e~EqLL~YK~~ql~~ 150 (195)
T PF12761_consen 83 EKGTDFSATEGTDWE--EVRLKRELAELEEKLSKVEQAAESR-----RSDTDSKPALVK-----REFEQLLDYKERQLRE 150 (195)
T ss_pred CCCCCCCCCCCCchH--HHHHHHHHHHHHHHHHHHHHHHHhc-----ccCCcchHHHHH-----HHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHH
Q 003961 444 LENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQ 498 (783)
Q Consensus 444 lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQ 498 (783)
++. -+.....-+...++-|+-+.+++.---+-|..|..||..|+
T Consensus 151 ~~~-----------~~~~~~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 151 LEE-----------GRSKSGKNLKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred hhc-----------cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 377
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=29.95 E-value=5.4e+02 Score=28.45 Aligned_cols=81 Identities=26% Similarity=0.326 Sum_probs=35.1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHH
Q 003961 507 EIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMT 586 (783)
Q Consensus 507 E~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~ 586 (783)
|-||-+++..+...-|+|...|-+.|+.-...... .+++..-....+.+.-+.++-..-.+|++.+.+||. |..-+.
T Consensus 13 ~~eaw~~~~~~~~l~rde~d~l~~~L~~l~~~~~~--~d~~~~~~~~~~~~~FL~~Fp~~k~~Le~~I~kL~~-lAd~id 89 (313)
T PF05461_consen 13 EDEAWERFVAEAELSRDEADALREALKELTEDMDS--EDKDRSQKDQQDRERFLKEFPQLKEELEEHIRKLRA-LADEID 89 (313)
T ss_pred hHHHHHHHHHhccCchhhHHHHHHHHHHHHhhhhc--cccchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHH
Confidence 34455555555555566666655555543332211 111111111223444455554444445555555542 333334
Q ss_pred HHhh
Q 003961 587 RLNR 590 (783)
Q Consensus 587 RL~~ 590 (783)
+.++
T Consensus 90 k~Hk 93 (313)
T PF05461_consen 90 KVHK 93 (313)
T ss_pred HHHH
Confidence 4433
No 378
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=29.82 E-value=85 Score=34.07 Aligned_cols=63 Identities=24% Similarity=0.221 Sum_probs=42.8
Q ss_pred HHHHHHHhhhHHHHHHHHH--HhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHH
Q 003961 280 TEMRKELNGKLSELRRLQM--ELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEK 342 (783)
Q Consensus 280 ~~~~~el~ek~sei~rlq~--~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~ 342 (783)
.+||..++++..++|-|.. +.+..+-.....-+..|+..++.++.+...++.++.+++.....
T Consensus 2 ~el~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (378)
T TIGR01554 2 SELKEQREEIVAEIRSLLDKAEKLEKELTAAALEKEELETDVEKLKEEIKLLEDAIADLEKVTEE 66 (378)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4688888888999998887 34333222222356677777888887777777777776665543
No 379
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=29.78 E-value=54 Score=29.85 Aligned_cols=28 Identities=32% Similarity=0.522 Sum_probs=24.7
Q ss_pred HHHHHHhhhhhHhhHHHHHHHHHHhccc
Q 003961 319 VATLEKENNSLKMEKTELVAALEKNRKS 346 (783)
Q Consensus 319 ~~~L~kEn~tlk~~~~eL~a~L~~~r~~ 346 (783)
|..+.+||..||+++..|++.|..++..
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6678999999999999999999998844
No 380
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=29.77 E-value=7.2e+02 Score=26.60 Aligned_cols=80 Identities=23% Similarity=0.283 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhhcc
Q 003961 513 HLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRMS 592 (783)
Q Consensus 513 rLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ms 592 (783)
.|+.+++.+...+-.|++.=-.+.+..+....+-..+..||..++....-+-.++.||......|-.-|...--.+..|+
T Consensus 113 eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~ 192 (205)
T KOG1003|consen 113 ELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAK 192 (205)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHH
Confidence 45555555555555555444445555454444444456688888887776678899999888888887777777666655
No 381
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=29.73 E-value=9.9e+02 Score=28.20 Aligned_cols=32 Identities=22% Similarity=0.164 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhc
Q 003961 313 ENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 313 ~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (783)
..|.+.++.-+|.-+.+..|+.-|.+.-++++
T Consensus 16 ~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~ 47 (459)
T KOG0288|consen 16 IDLNTELAQCEKAQSRLSAQLVILRAESRAIK 47 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444433
No 382
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.56 E-value=8.1e+02 Score=30.64 Aligned_cols=51 Identities=20% Similarity=0.363 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhhccCCcc------hhhhHH----------HHHHHHHHHHhcCCchHHHHHHHHh
Q 003961 577 LRLAVEQSMTRLNRMSVDSD------FLVDRR----------IVIKLLVTYFQRNHSKEVLDLMVRM 627 (783)
Q Consensus 577 LR~ALeqsl~RL~~ms~dsD------~~VDRR----------IVtkLLLTYf~R~~sKEVL~LMArM 627 (783)
.++.|+.||+-|++..|=.+ .+++|| .|.+|+=.|..=.+..+|-+|.-++
T Consensus 115 AKkNLTtSiT~L~~L~MLv~~vesL~~l~~kr~y~e~a~~lqai~~ll~~F~~Yk~v~~I~~Ls~si 181 (793)
T KOG2180|consen 115 AKKNLTTSITTLHRLHMLVTGVESLNALLSKRSYGEAASPLQAILQLLNHFIAYKSVDEIANLSESI 181 (793)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 36789999999988765333 233343 3444444333333344666666555
No 383
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.51 E-value=1.1e+03 Score=28.83 Aligned_cols=91 Identities=22% Similarity=0.257 Sum_probs=50.8
Q ss_pred hHHHhHHHHHhh-hhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHH
Q 003961 479 KLANCMRTIEAK-NVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSE 557 (783)
Q Consensus 479 ~L~~~mealeAK-nvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E 557 (783)
.|.+||.++... +.++-||-.|=-.|-. |+..+-.++.+|...+..+.-+.. | .-.|.+
T Consensus 634 ~L~~~~~~L~~~~~~~lp~l~~AErdFk~----------Elq~~~~~~~~L~~~iET~~~~~~-----K-----Q~~H~~ 693 (741)
T KOG4460|consen 634 DLMNRMKKLLHSFHSELPVLSDAERDFKK----------ELQLIPDQLRHLGNAIETVTMKKD-----K-----QQQHME 693 (741)
T ss_pred HHHHHHHHHHhcccccCCcchhHHHHHHH----------HHHHhHHHHHHHHHHHHHHHHHHH-----H-----HHHHHH
Confidence 456677766554 7788888776555544 444555556655554433332211 1 224556
Q ss_pred HHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhhcc
Q 003961 558 KMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRMS 592 (783)
Q Consensus 558 ~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ms 592 (783)
..+.+.+.-..-+. ++=++.+...|..|.-|.
T Consensus 694 ~v~~al~K~~Y~l~---~~Q~~~iqsiL~~L~~~i 725 (741)
T KOG4460|consen 694 KVLSALPKPTYILS---AYQRKCIQSILKELGEHI 725 (741)
T ss_pred HHHhhccCCccccc---HHHHHHHHHHHHHHHHHH
Confidence 66666554322222 556667777777776655
No 384
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=29.49 E-value=9.7e+02 Score=28.05 Aligned_cols=154 Identities=19% Similarity=0.254 Sum_probs=77.2
Q ss_pred HHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHH-----------
Q 003961 473 IDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEV----------- 541 (783)
Q Consensus 473 iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~----------- 541 (783)
|+++.+++...++.+..+..+..| .|.+-.+ ..+|+.+.+.-...+.+..|..+.++-.
T Consensus 134 ~~~~~~~~~~~~q~lq~~~~~~er-------~~~~y~~---~~qElq~k~t~~~afn~tikife~q~~~~e~~~ka~~d~ 203 (464)
T KOG4637|consen 134 INAVGKKLREYHQQLQEKSLEYER-------LYEEYTR---TSQELQMKRTAIEAFNETIKIFEEQCGTQENLSKAYIDR 203 (464)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhH
Confidence 566666666666555444443333 3333322 2566666666655555555555444311
Q ss_pred ----------hhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHH-HH------H-hhccCCcchhhhHHH
Q 003961 542 ----------SRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSM-TR------L-NRMSVDSDFLVDRRI 603 (783)
Q Consensus 542 ----------~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl-~R------L-~~ms~dsD~~VDRRI 603 (783)
..+|+..|+.-....+..+.+++....+|+++.-+|-.++-..+ .| | +.|-.=-...+-=|.
T Consensus 204 ~~~eqG~qg~~e~~~~~~a~N~~~~ks~i~ei~~sl~~l~d~lk~~~q~~~~~~enr~~e~m~l~k~~nslkp~l~~lr~ 283 (464)
T KOG4637|consen 204 FRREQGSQGNSEKEIGRIANNYDKLKSRIREIHDSLTRLEDDLKALIQALRSNSENRLCELMELDKAMNSLKPDLIQLRK 283 (464)
T ss_pred HHHHhccCCchHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcCchHHHHHH
Confidence 12333334443334555566777667777777665544441111 11 1 001000111333344
Q ss_pred HHHHHHHHHhcCCch-HHHHHHHH-hcCCCHHHHH
Q 003961 604 VIKLLVTYFQRNHSK-EVLDLMVR-MLGFSDEDKQ 636 (783)
Q Consensus 604 VtkLLLTYf~R~~sK-EVL~LMAr-MLgFSDEEK~ 636 (783)
....-+-|+.-..-+ .+|+++.. .+-|+|++-.
T Consensus 284 ~~d~y~~~l~~~~~~~k~l~~~l~~~~~~t~~qy~ 318 (464)
T KOG4637|consen 284 IRDQYLVWLMIKGVRQKVLNLWLGMENEWTDAQYL 318 (464)
T ss_pred HHHHHHHHHHhcCccHHHHHHHHhhhhcCCHHHHH
Confidence 455556666644444 78888888 4678877643
No 385
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=29.08 E-value=57 Score=23.95 Aligned_cols=20 Identities=25% Similarity=0.596 Sum_probs=14.4
Q ss_pred HHHhhHHHHHhhhhhHHHhH
Q 003961 465 EIQKSKEIIDGLNNKLANCM 484 (783)
Q Consensus 465 E~~~ske~iedL~~~L~~~m 484 (783)
|+..++..|.||..+|..|.
T Consensus 2 E~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSECR 21 (23)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 45666777777777777775
No 386
>PF14992 TMCO5: TMCO5 family
Probab=29.02 E-value=8.4e+02 Score=27.12 Aligned_cols=74 Identities=24% Similarity=0.373 Sum_probs=38.2
Q ss_pred hhcccCcccchhHH----HHHHHHHhhhHHHHHHHHHHhccccc-----CCcchH-------HHHHHHHHHHHHHhhhhh
Q 003961 266 KSLKMDKDKTSIEI----TEMRKELNGKLSELRRLQMELNRRED-----GDANDV-------VENLKRVVATLEKENNSL 329 (783)
Q Consensus 266 ~~lk~~~~kts~~~----~~~~~el~ek~sei~rlq~~l~~~e~-----e~~~~~-------~~sLk~~~~~L~kEn~tl 329 (783)
.+|.||-+|---.+ +.+-.-.++|...|.+|.-|++.-.. ++-+.. +..|....+.|+++|..+
T Consensus 3 ~sLn~dle~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l 82 (280)
T PF14992_consen 3 MSLNMDLEKDEQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRSEEEDIISEERETDLQELELETAKLEKENEHL 82 (280)
T ss_pred chhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhhhchHHHHHHHHhhhHHHhhhhHhh
Confidence 45555555433222 23334467788889999888875221 111222 233344445555555555
Q ss_pred HhhHHHHHHH
Q 003961 330 KMEKTELVAA 339 (783)
Q Consensus 330 k~~~~eL~a~ 339 (783)
...+.+|-.+
T Consensus 83 ~~~~~elq~k 92 (280)
T PF14992_consen 83 SKSVQELQRK 92 (280)
T ss_pred hhhhhhhhhh
Confidence 5555555444
No 387
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=28.38 E-value=8.6e+02 Score=27.08 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHhhcc
Q 003961 573 DNAKLRLAVEQSMTRLNRMS 592 (783)
Q Consensus 573 Dn~kLR~ALeqsl~RL~~ms 592 (783)
...++|+||.+-|.+|+.+.
T Consensus 170 ~l~~vR~Ala~Di~~L~~~~ 189 (372)
T PF04375_consen 170 SLLPVRQALAQDIAALRAVP 189 (372)
T ss_pred chHHHHHHHHHHHHHHHCCC
Confidence 45678888888888888765
No 388
>smart00338 BRLZ basic region leucin zipper.
Probab=28.31 E-value=1.1e+02 Score=25.66 Aligned_cols=34 Identities=44% Similarity=0.512 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhc
Q 003961 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (783)
-+..|...+..|+.+|..|..++..|...+..++
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777777666
No 389
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=28.23 E-value=9.3e+02 Score=27.43 Aligned_cols=39 Identities=21% Similarity=0.266 Sum_probs=24.0
Q ss_pred CChhHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHH
Q 003961 372 PGKEEMEQSLQKLEKDLKET-CSERDKALQELTRLKQHLI 410 (783)
Q Consensus 372 ~~kEeme~slq~L~~eL~e~-~~E~dKa~kEL~RLRqHLL 410 (783)
|...++.+.+..+..-|..+ +.-..+..+.|.+|+++|.
T Consensus 255 p~~~el~qrLd~l~~RL~~am~~~L~~~r~rL~~L~~RL~ 294 (432)
T TIGR00237 255 PNQDELLQRLDGFNVRLHRAFDTLLHQKKARLEQLVASLQ 294 (432)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 56667776776666666443 3335566666777777654
No 390
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=28.11 E-value=5.9e+02 Score=25.39 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=12.5
Q ss_pred hhhhhhHHhHHHHHHHH----HHHHHHH
Q 003961 565 GRANKLEEDNAKLRLAV----EQSMTRL 588 (783)
Q Consensus 565 ~~~~KL~eDn~kLR~AL----eqsl~RL 588 (783)
..+..|..+|+.||+-- =-.+.||
T Consensus 82 ~~i~rL~~ENe~lR~Wa~t~LPd~V~RL 109 (135)
T TIGR03495 82 QRIERLKRENEDLRRWADTPLPDDVIRL 109 (135)
T ss_pred HHHHHHHHcCHHHHHHhcCCCcHHHHHH
Confidence 34444566666666533 3344555
No 391
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=28.09 E-value=4.6e+02 Score=23.86 Aligned_cols=31 Identities=23% Similarity=0.451 Sum_probs=15.2
Q ss_pred HHhhhhhhhhhHHhHHHHHHHHHHHHHHHhh
Q 003961 560 LAEGKGRANKLEEDNAKLRLAVEQSMTRLNR 590 (783)
Q Consensus 560 l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ 590 (783)
++.++..+.-|+.--.+++..-+.=|.||++
T Consensus 41 m~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~ 71 (79)
T PF08581_consen 41 MQQIRQKVYELEQAHRKMKQQYEEEIARLRR 71 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444554455555555555555543
No 392
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=28.08 E-value=1.2e+02 Score=25.34 Aligned_cols=34 Identities=32% Similarity=0.396 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhc
Q 003961 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (783)
...+++..+..|+++...++.+...|...+..++
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~ 51 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERLK 51 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456667777777777777777777777777774
No 393
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=27.86 E-value=2.3e+02 Score=28.09 Aligned_cols=72 Identities=28% Similarity=0.429 Sum_probs=50.2
Q ss_pred HhhchHHHHHHhhcccCcccchhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHH
Q 003961 255 QRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKT 334 (783)
Q Consensus 255 ~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~ 334 (783)
..+|.-|..++-.|+ ..|.++|.-....++-||++ ..-+|++|...+..|++|...|..+..
T Consensus 14 ~E~N~QLekqi~~l~-------~kiek~r~n~~drl~siR~y-----------e~Ms~~~l~~llkqLEkeK~~Le~qlk 75 (129)
T PF15372_consen 14 LELNDQLEKQIIILR-------EKIEKIRGNPSDRLSSIRRY-----------EQMSVESLNQLLKQLEKEKRSLENQLK 75 (129)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHhCCCccccHHHHHH-----------hhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555543 34556666555666666662 112789999999999999999999999
Q ss_pred HHHHHHHHhc
Q 003961 335 ELVAALEKNR 344 (783)
Q Consensus 335 eL~a~L~~~r 344 (783)
.++-.|++=-
T Consensus 76 ~~e~rLeQEs 85 (129)
T PF15372_consen 76 DYEWRLEQES 85 (129)
T ss_pred HHHHHHHHHH
Confidence 9988877543
No 394
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=27.83 E-value=4.1e+02 Score=30.02 Aligned_cols=32 Identities=34% Similarity=0.376 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhc
Q 003961 313 ENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 313 ~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (783)
..|+..+..|+++...++.++.+|...|....
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~ 361 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNLKKLK 361 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 66777777888888888888888888877776
No 395
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=27.58 E-value=5e+02 Score=27.70 Aligned_cols=51 Identities=24% Similarity=0.326 Sum_probs=23.9
Q ss_pred hhhHHHhHHHHHhhchHHHHHHhhcccCcccchhHHHHHHHHHhhhHHHHHHHHHHh
Q 003961 244 FADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMEL 300 (783)
Q Consensus 244 ~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l 300 (783)
....+..+++.. .++++.++.|+ .|.-.+...+..|...-+..-.+.|.++
T Consensus 227 ~~~~~~~le~~~---~~~ee~~~~L~---ekme~e~~~~~~e~e~~l~~k~~eq~~~ 277 (297)
T PF02841_consen 227 QKEQEQMLEQQE---RSYEEHIKQLK---EKMEEEREQLLQEQERLLEQKLQEQEEL 277 (297)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444443 36777777765 2222233344455444444444444444
No 396
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=27.33 E-value=3.5e+02 Score=28.93 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=13.7
Q ss_pred ccchhHHHHHHHHHhhhHHHHHHHH
Q 003961 273 DKTSIEITEMRKELNGKLSELRRLQ 297 (783)
Q Consensus 273 ~kts~~~~~~~~el~ek~sei~rlq 297 (783)
+++..+..+++.||.++..++.++|
T Consensus 154 ~~~~~~~~kL~~el~~~~~~Le~~~ 178 (216)
T KOG1962|consen 154 DKLKADLEKLETELEKKQKKLEKAQ 178 (216)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4444555566666665555555444
No 397
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=27.19 E-value=2.4e+02 Score=26.82 Aligned_cols=34 Identities=26% Similarity=0.364 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003961 377 MEQSLQKLEKDLKETCSERDKALQELTRLKQHLI 410 (783)
Q Consensus 377 me~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLL 410 (783)
|...+..|+..+.++-.|..++..|-..||.+|-
T Consensus 20 l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~ 53 (107)
T PF06156_consen 20 LLEELEELKKQLQELLEENARLRIENEHLRERLE 53 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444455555555554433
No 398
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=27.06 E-value=4.3e+02 Score=23.15 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=12.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Q 003961 429 ELRENNEYQRAQILHLENVLKQT 451 (783)
Q Consensus 429 ELreenE~~R~~Is~lEraLK~~ 451 (783)
+|+.+...+..+|.+++..+...
T Consensus 9 ~l~~~l~~~~~q~~~l~~~~~~~ 31 (106)
T PF01920_consen 9 ELNQQLQQLEQQIQQLERQLREL 31 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555666666555543
No 399
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=26.77 E-value=7.5e+02 Score=25.83 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=18.9
Q ss_pred hcCCCHHHHHHhhhcccC-CCCCcccccccCCCccccccc
Q 003961 627 MLGFSDEDKQRIGMAQQG-AGKGVVRGVLGLPGRLVGGII 665 (783)
Q Consensus 627 MLgFSDEEK~riGL~~q~-~g~G~~rgv~g~pgRlvgg~~ 665 (783)
..-+|++++.++.-.-.. .|.. +.-.+-.-+-++|||.
T Consensus 184 a~~l~~~~~~~i~~~l~~~~~~~-v~~~~~vdp~ligGi~ 222 (246)
T TIGR03321 184 AFELPEEQREQIRDTIRETLGPE-IRLRFQTEPDLIGGIE 222 (246)
T ss_pred cCCCCHHHHHHHHHHHHHHHCCC-eeEEeeeCchhcCceE
Confidence 455788888877644332 1222 2222333335666554
No 400
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=26.76 E-value=4.4e+02 Score=23.13 Aligned_cols=62 Identities=21% Similarity=0.363 Sum_probs=31.9
Q ss_pred hhHHHHHHhhh-HHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHH
Q 003961 544 SEKEEILVKLS-HSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRMSVDSDFLVDRRIVIK 606 (783)
Q Consensus 544 kEKeei~~KLs-~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ms~dsD~~VDRRIVtk 606 (783)
.++..++.+|. ..+.....+......++.+...|+.+.+-+=..|.. ..+...+.+++.++.
T Consensus 57 ~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l~~-~~~~e~L~~~~~i~~ 119 (127)
T smart00502 57 KRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLSHAINFTEEALNS-GDPTELLLSKKLIIE 119 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCChHHHHHHHHHHH
Confidence 44444555543 233334444455566677777776665544444433 223455666655544
No 401
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=26.70 E-value=1.9e+02 Score=28.79 Aligned_cols=31 Identities=39% Similarity=0.498 Sum_probs=18.0
Q ss_pred cccCcccchhHHHHHHHHHhhhHHHHHHHHH
Q 003961 268 LKMDKDKTSIEITEMRKELNGKLSELRRLQM 298 (783)
Q Consensus 268 lk~~~~kts~~~~~~~~el~ek~sei~rlq~ 298 (783)
.+-+..+.+.|+.++.+||..+..++..|+.
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~Lkk 182 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKK 182 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667777777777765544444433
No 402
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=26.57 E-value=9.4e+02 Score=26.94 Aligned_cols=122 Identities=20% Similarity=0.225 Sum_probs=67.6
Q ss_pred hHHHHHhhchHHHHHHhhcccCcccchhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhh
Q 003961 250 KLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSL 329 (783)
Q Consensus 250 ~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tl 329 (783)
.++.-++.|++|-.-+.. -.+-.-...|.+ |.+-.-.++.-+.+--||| ..|-..+++-+.|-..+
T Consensus 83 q~~ks~~Q~e~~v~a~e~-----~~~rll~d~i~n-Lk~se~~lkqQ~~~a~RrE--------~ilv~rlA~kEQEmqe~ 148 (330)
T KOG2991|consen 83 QLRKSWKQYEAYVQALEG-----KYTRLLSDDITN-LKESEEKLKQQQQEAARRE--------NILVMRLATKEQEMQEC 148 (330)
T ss_pred HHHHHHHHHHHHHHHhcC-----cccchhHHHHHh-hHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 344456677777766654 112222222222 1111112333334444444 35666778888899999
Q ss_pred HhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 003961 330 KMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLK 406 (783)
Q Consensus 330 k~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLR 406 (783)
+.++..|.+.+.-.-..+ |-.-.++ -++.-...|+++|+++..-.+.++-||...+
T Consensus 149 ~sqi~~lK~qq~Ps~~ql-------------R~~llDP--------Ainl~F~rlK~ele~tk~Klee~QnelsAwk 204 (330)
T KOG2991|consen 149 TSQIQYLKQQQQPSVAQL-------------RSTLLDP--------AINLFFLRLKGELEQTKDKLEEAQNELSAWK 204 (330)
T ss_pred HHHHHHHHHhhCcHHHHH-------------HHHhhCh--------HHHHHHHHHHHHHHHHHHHHHHHHhhhheee
Confidence 999998877653221111 1112233 2333366899999999777777777876554
No 403
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=26.51 E-value=1.3e+02 Score=25.12 Aligned_cols=32 Identities=28% Similarity=0.511 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 003961 375 EEMEQSLQKLEKDLKETCSERDKALQELTRLK 406 (783)
Q Consensus 375 Eeme~slq~L~~eL~e~~~E~dKa~kEL~RLR 406 (783)
..+...++.|++++..+..+.+++..|+.+|+
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~ 51 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERLK 51 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555566666666666666666666666663
No 404
>COG4423 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.23 E-value=2.9e+02 Score=25.71 Aligned_cols=63 Identities=16% Similarity=0.122 Sum_probs=45.0
Q ss_pred HHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhhccCCcchhhhHH
Q 003961 539 AEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRMSVDSDFLVDRR 602 (783)
Q Consensus 539 ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ms~dsD~~VDRR 602 (783)
++.+.+|...+++ .|..+.+--.+++++.++.....+|+..|.....+++.+.+......|+.
T Consensus 10 ~d~lar~LA~rtg-~S~t~AV~~Al~~~lar~r~r~~pL~~~l~a~~~~~~a~~~~~~k~~d~~ 72 (81)
T COG4423 10 VDRLARELAARTG-ESKTDAVRDALKERLARLRAREIPLRERLAAILRRLRALPSPDSKRLDKI 72 (81)
T ss_pred HHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcchhHHHH
Confidence 3444444333332 35667777777778888888899999999999999999887776666633
No 405
>PRK10869 recombination and repair protein; Provisional
Probab=25.73 E-value=1.1e+03 Score=27.62 Aligned_cols=14 Identities=29% Similarity=0.150 Sum_probs=9.2
Q ss_pred hhhccccchhhhhh
Q 003961 110 RLNGEYGLLKQNLD 123 (783)
Q Consensus 110 rl~~engslk~nl~ 123 (783)
-+-.|||+=|-|+=
T Consensus 26 vitGetGaGKS~il 39 (553)
T PRK10869 26 VITGETGAGKSIAI 39 (553)
T ss_pred EEECCCCCChHHHH
Confidence 34567777777654
No 406
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=25.24 E-value=9.5e+02 Score=26.52 Aligned_cols=63 Identities=21% Similarity=0.285 Sum_probs=39.4
Q ss_pred CcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHH
Q 003961 307 DANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEK 386 (783)
Q Consensus 307 ~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~ 386 (783)
+.+|..+.|--++..+-.--.+|...+..--..|+.+| +.|.+
T Consensus 97 dl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR-------------------------------~~E~s------ 139 (271)
T PF13805_consen 97 DLSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKSIR-------------------------------NREES------ 139 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHH------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHH------
Confidence 34456666666665555555566666666666666666 33333
Q ss_pred HHHHhHHHHHHHHHHHHHHHH
Q 003961 387 DLKETCSERDKALQELTRLKQ 407 (783)
Q Consensus 387 eL~e~~~E~dKa~kEL~RLRq 407 (783)
|..++.-+++...++.+|+.
T Consensus 140 -l~p~R~~r~~l~d~I~kLk~ 159 (271)
T PF13805_consen 140 -LQPSRDRRRKLQDEIAKLKY 159 (271)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH
T ss_pred -HhHHHHHhHHHHHHHHHHHh
Confidence 44566667788888888875
No 407
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=25.24 E-value=6.4e+02 Score=24.52 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=27.7
Q ss_pred HHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHH
Q 003961 470 KEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAE 507 (783)
Q Consensus 470 ke~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE 507 (783)
..+|..+.++|...|+.+...-..+.++..+|+.-|+-
T Consensus 121 d~el~~l~~ql~~hl~s~~~n~~~l~~~~~~ie~~~~~ 158 (160)
T PF13094_consen 121 DEELLPLLKQLNKHLESMQNNLQQLKGLLEAIERSYAA 158 (160)
T ss_pred hHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHh
Confidence 45677777777777877777555688888888877763
No 408
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=25.05 E-value=5e+02 Score=28.91 Aligned_cols=115 Identities=19% Similarity=0.257 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhc---ccCccc-chhHHHHHHHHHh------------hhHH
Q 003961 228 SQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSL---KMDKDK-TSIEITEMRKELN------------GKLS 291 (783)
Q Consensus 228 ~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~l---k~~~~k-ts~~~~~~~~el~------------ek~s 291 (783)
..++..|.+....+.++....++||.=.=--.-++.|+..- +..... .-+.+.+.....- +---
T Consensus 12 ~~~~~~k~~t~e~k~~vD~~~LqLqNl~YE~~hL~kEI~~C~~F~s~~~~i~Lv~~eEF~~~ap~~~~~~~~~~~~~H~l 91 (355)
T PF09766_consen 12 FRIKKAKDETAEAKQEVDALHLQLQNLLYEKSHLQKEIKKCLDFKSKYEDIELVPVEEFYAKAPEEISDPELTEDDEHQL 91 (355)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCCCcCccHHHHHHhChhhccccccCCCChHHH
Confidence 35667777777888888877777764222222334444321 111111 1233333333322 2233
Q ss_pred HHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhc
Q 003961 292 ELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 292 ei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (783)
-|.||+-||.-|.. -....+.|+...+.|.++|.+.+..+..|...|+.+.
T Consensus 92 ml~RL~~EL~~Rk~--L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~ 142 (355)
T PF09766_consen 92 MLARLEFELEQRKR--LEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLK 142 (355)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 46777777765431 2234445555555555666666666666666665555
No 409
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=24.98 E-value=1.3e+03 Score=27.91 Aligned_cols=145 Identities=17% Similarity=0.229 Sum_probs=82.3
Q ss_pred hhchHHHHHHhhcccCcccchhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHH
Q 003961 256 RLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTE 335 (783)
Q Consensus 256 k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~e 335 (783)
++|+-+.-|.+.=...-.-....+..|..-|++.++-+.-- -+++.. .....++-|+.+-..|+.-+..|..+...
T Consensus 287 sL~kvl~aE~kaR~~k~~~e~sk~eeL~~~L~~~lea~q~a-gkla~Q---e~~~~ld~LqEksqile~sv~~l~~~lkD 362 (531)
T PF15450_consen 287 SLNKVLNAEQKARDAKEKLEESKAEELATKLQENLEAMQLA-GKLAQQ---ETQSELDLLQEKSQILEDSVAELMRQLKD 362 (531)
T ss_pred HHHHHHhhHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHh-hhhhHh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555544444555566677777777777665433 122221 22345667777778888888889999999
Q ss_pred HHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 003961 336 LVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQE 415 (783)
Q Consensus 336 L~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~E 415 (783)
|.+.+-.++.- + + .+-..|..-|..+.++.... .-++..-|++++.-.-..-.+
T Consensus 363 Ld~~~~aLs~r----l--------------d-----~qEqtL~~rL~e~~~e~~~~---~r~~lekl~~~q~e~~~~l~~ 416 (531)
T PF15450_consen 363 LDDHILALSWR----L--------------D-----LQEQTLNLRLSEAKNEWESD---ERKSLEKLDQWQNEMEKHLKE 416 (531)
T ss_pred HHHHHHHHhhh----h--------------h-----HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 99988887721 1 1 24556766666666655554 334445555555442222222
Q ss_pred hhhhhhhhhHHHHHH
Q 003961 416 ESEKMDEDSKIIEEL 430 (783)
Q Consensus 416 e~ekmded~k~IeEL 430 (783)
=.+|+|.=-.-|+++
T Consensus 417 v~eKVd~LpqqI~~v 431 (531)
T PF15450_consen 417 VQEKVDSLPQQIEEV 431 (531)
T ss_pred HHHHHHhhhHHHHHH
Confidence 245555433334444
No 410
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=24.81 E-value=1e+03 Score=28.48 Aligned_cols=93 Identities=29% Similarity=0.325 Sum_probs=0.0
Q ss_pred HHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHH--
Q 003961 471 EIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEE-- 548 (783)
Q Consensus 471 e~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKee-- 548 (783)
..|++|..++.-+..-.-. |++|-++ |-..|..+.++...+...|+.+.+.+..+..|++.
T Consensus 420 ~RI~eLt~qlQ~adSKa~~--------------f~~Ec~a---L~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr 482 (518)
T PF10212_consen 420 SRIEELTSQLQHADSKAVH--------------FYAECRA---LQKRLESAEKEKESLEEELKEANQNISRLQDELETTR 482 (518)
T ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --HHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHH
Q 003961 549 --ILVKLSHSEKMLAEGKGRANKLEEDNAKLRLA 580 (783)
Q Consensus 549 --i~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~A 580 (783)
+-..|+..=-++......+.+-.+++..|+.+
T Consensus 483 ~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK~~ 516 (518)
T PF10212_consen 483 RNYEEQLSMMSEHLASMNEQLAKQREEIQTLKLA 516 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 411
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=24.78 E-value=1.8e+03 Score=29.72 Aligned_cols=41 Identities=24% Similarity=0.199 Sum_probs=30.1
Q ss_pred HHHHHhhcccCcccchhHHHHHHHHHhhhHHHHHHHHHHhc
Q 003961 261 FQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELN 301 (783)
Q Consensus 261 fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~ 301 (783)
|..++...-.=+-+.++....-+.++-.+.+.|.-||-.+.
T Consensus 787 ~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~ 827 (1463)
T COG5022 787 VDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIK 827 (1463)
T ss_pred cccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34444444445567888889999999999999999995443
No 412
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=24.76 E-value=5.4e+02 Score=23.47 Aligned_cols=72 Identities=18% Similarity=0.222 Sum_probs=47.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHH
Q 003961 388 LKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQ 467 (783)
Q Consensus 388 L~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~ 467 (783)
|...+.|-|...+|+.-+|.+--+.+ -++..+ -.++..+|..|.+||.+-. .+|...+.||.
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e----~ki~~Q-------i~Em~~ir~~v~eLE~~h~-------kmK~~YEeEI~ 67 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYE----HKINSQ-------IQEMQQIRQKVYELEQAHR-------KMKQQYEEEIA 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-------HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHH-------HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 45567778888888888887633332 123332 1257778888999888543 35556777888
Q ss_pred hhHHHHHhhh
Q 003961 468 KSKEIIDGLN 477 (783)
Q Consensus 468 ~ske~iedL~ 477 (783)
.++.+++.++
T Consensus 68 rLr~eLe~r~ 77 (79)
T PF08581_consen 68 RLRRELEQRG 77 (79)
T ss_dssp HHHHHHCHHT
T ss_pred HHHHHHHhhC
Confidence 8877666543
No 413
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.63 E-value=1.5e+03 Score=28.77 Aligned_cols=85 Identities=16% Similarity=0.097 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHH--HHHhhhhhHhhHHHHHHHHHHHHHHh
Q 003961 434 NEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMR--TIEAKNVELLNLQTALGQYFAEIEAK 511 (783)
Q Consensus 434 nE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~me--aleAKnvEl~NLQtALgqfqAE~EA~ 511 (783)
++..++++-+++...--.|-+ -|.+..|..++.++.+.|..=++=-.+ .+.+.+..|+-||.-|++.++.+++-
T Consensus 618 v~TL~~~~k~~~~~~~~~~~~----i~~~q~e~~klqeq~~Al~~i~~~~fa~ID~~Sa~rqIael~~~lE~L~~t~~~~ 693 (1104)
T COG4913 618 VETLRETVKAMLSREDFYMIK----IMRQQGEYIKLQEQANALAHIQALNFASIDLPSAQRQIAELQARLERLTHTQSDI 693 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHhcchhhcchhhHHHHHHHHHHHHHHhcCChhHH
Confidence 455666666655544333222 234566778888888777543322111 33445566777777777777777665
Q ss_pred hhhHHHHHHHH
Q 003961 512 GHLERELALAR 522 (783)
Q Consensus 512 ErLe~ELa~ar 522 (783)
+-+-+-+.+++
T Consensus 694 ~~~~~~l~aaQ 704 (1104)
T COG4913 694 AIAKAALDAAQ 704 (1104)
T ss_pred HHHHHHHHHHH
Confidence 54444444443
No 414
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=24.61 E-value=8e+02 Score=25.44 Aligned_cols=143 Identities=24% Similarity=0.325 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCcccchhHHHHHHHHHhhhHHHHHHHHHHhccccc
Q 003961 226 YESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRRED 305 (783)
Q Consensus 226 ~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~ 305 (783)
+...+..|..-..+-+..+.+++..|.+|..-...|....-. +..+.-.+.-...++.+|. ++..-|..
T Consensus 27 l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~-~W~r~~S~~~~~~l~~~l~-------~~~~~L~~--- 95 (296)
T PF13949_consen 27 LEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGE-RWTRPPSSELNASLRKELQ-------KYREYLEQ--- 95 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-TCGSS-HHHHCHHHHHHHH-------HHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCCCcHhhHHHHHHHHH-------HHHHHHHH---
Confidence 344455555555666788999999999999999998888754 5555533332334444433 23322322
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHH
Q 003961 306 GDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLE 385 (783)
Q Consensus 306 e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~ 385 (783)
+..+-..++..+.....-...|..-..+|.+.|-..... + . |...+.-..|..|-
T Consensus 96 --A~~sD~~~~~~~~~~~~~l~~L~~~~~~L~~~lp~~~~~-----------------~--~----~~~~~~i~~L~~ll 150 (296)
T PF13949_consen 96 --ASESDSQLRSKLESIEENLELLSGPIEELEASLPSSSPS-----------------D--S----PQVSEVIRQLRELL 150 (296)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHS--B--------------------S--S----GSS-HHHHHHHHHH
T ss_pred --HHhhHHHHHHHHHHHHHHHHHHcCChhhHHhhCCCCCcc-----------------c--c----cchhHHHHHHHHHH
Confidence 334555555556555555566666666666655443311 0 1 12234444455666
Q ss_pred HHHHHhHHHHHHHHHHHHH
Q 003961 386 KDLKETCSERDKALQELTR 404 (783)
Q Consensus 386 ~eL~e~~~E~dKa~kEL~R 404 (783)
..|.+...+|+....+|..
T Consensus 151 ~~l~~l~~eR~~~~~~lk~ 169 (296)
T PF13949_consen 151 NKLEELKKEREELLEQLKE 169 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6777777778877776665
No 415
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=24.57 E-value=7.1e+02 Score=24.80 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=11.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Q 003961 427 IEELRENNEYQRAQILHLENVLKQ 450 (783)
Q Consensus 427 IeELreenE~~R~~Is~lEraLK~ 450 (783)
..+.++..+....++..+.+.+..
T Consensus 26 F~~~~~~~~~le~~Lk~l~~~~~~ 49 (236)
T PF09325_consen 26 FEEIKDYVDKLEEQLKKLYKSLER 49 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555544443
No 416
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=24.46 E-value=6.1e+02 Score=24.00 Aligned_cols=29 Identities=31% Similarity=0.247 Sum_probs=12.7
Q ss_pred HhhhhhhhhhHHhHHHHHHHHHHHHHHHh
Q 003961 561 AEGKGRANKLEEDNAKLRLAVEQSMTRLN 589 (783)
Q Consensus 561 ~e~K~~~~KL~eDn~kLR~ALeqsl~RL~ 589 (783)
..+...+.++..+...+++.+++-...+.
T Consensus 104 ~~l~~~~~~l~~~l~~~~~~~~~~~~~l~ 132 (140)
T PRK03947 104 EELEKALEKLEEALQKLASRIAQLAQELQ 132 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444433
No 417
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=24.35 E-value=7.2e+02 Score=24.79 Aligned_cols=30 Identities=27% Similarity=0.289 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHhhhhH
Q 003961 517 ELALAREESAKLSEYLKNADQRAEVSRSEK 546 (783)
Q Consensus 517 ELa~aree~a~Ls~~Lk~a~q~ie~~~kEK 546 (783)
..+.++..++...+.|...++.|+..+.|-
T Consensus 62 ~Q~~Lr~~~~~~~~~l~~re~~i~rL~~EN 91 (135)
T TIGR03495 62 AQAQLRQQLAQARALLAQREQRIERLKREN 91 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 334455555555566666666666555553
No 418
>PF12443 AKNA: AT-hook-containing transcription factor; InterPro: IPR022150 This domain family is found in eukaryotes, and is approximately 110 amino acids in length. This family contains a transcription factor which regulates the expression of the costimulatory molecules on lymphocytes.
Probab=24.22 E-value=37 Score=32.53 Aligned_cols=47 Identities=32% Similarity=0.458 Sum_probs=40.8
Q ss_pred HHhhhhhhhhhHHhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHH
Q 003961 560 LAEGKGRANKLEEDNAKLRLAVEQSMTRLNRMSVDSDFLVDRRIVIKLL 608 (783)
Q Consensus 560 l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ms~dsD~~VDRRIVtkLL 608 (783)
..+++..|.||.+..+.|+-++++.=.+....+ +|...|.|+|...|
T Consensus 47 ~~ege~~~qkL~eqteeLK~kvqe~sk~i~~~~--~~~~qD~~~vl~~l 93 (106)
T PF12443_consen 47 IREGEQMIQKLGEQTEELKDKVQEFSKRIEQDS--PDHLQDSRLVLPSL 93 (106)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCC--cccccccccccccc
Confidence 567888999999999999999999999998877 66689999998764
No 419
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=24.17 E-value=4.6e+02 Score=27.16 Aligned_cols=83 Identities=24% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHHHh
Q 003961 312 VENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKET 391 (783)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e~ 391 (783)
+..|..++..|+++...++.++.+++..=+......+.++. .|+..-..+-....+.
T Consensus 138 n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~-----------------------~Le~~W~~~v~kn~ei 194 (221)
T PF05700_consen 138 NEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELR-----------------------YLEQRWKELVSKNLEI 194 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-----------------------HHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 003961 392 CSERDKALQELTRLKQHLIEKAQEES 417 (783)
Q Consensus 392 ~~E~dKa~kEL~RLRqHLLe~E~Ee~ 417 (783)
..+...+.+|+.+||+.....+...+
T Consensus 195 e~a~~~Le~ei~~l~~~~~~~~~~~~ 220 (221)
T PF05700_consen 195 EVACEELEQEIEQLKRKAAELKENQQ 220 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc
No 420
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=24.16 E-value=1.2e+03 Score=27.34 Aligned_cols=77 Identities=22% Similarity=0.395 Sum_probs=59.5
Q ss_pred cccCcccchhHHHHHHHH------Hh-----------hhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhH
Q 003961 268 LKMDKDKTSIEITEMRKE------LN-----------GKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLK 330 (783)
Q Consensus 268 lk~~~~kts~~~~~~~~e------l~-----------ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk 330 (783)
+.+|++|..+++.-+-.+ || -.+.-|||-=..|..--..-+.....+|+.-|+.+-.||+.|.
T Consensus 226 ~pLDkdk~~~~l~~lWRDSii~R~Ld~~~y~ly~~l~~el~siRr~Cd~lP~~m~tKveelar~Lr~~I~~VarENs~Lq 305 (442)
T PF06637_consen 226 LPLDKDKFETDLRNLWRDSIIPRSLDNLGYSLYHPLGPELESIRRTCDHLPKIMTTKVEELARSLRAGIERVARENSDLQ 305 (442)
T ss_pred cccchHHHHHHHHHHHHHHHHhhhhhcCCcccCCCCcchHHHHHHHHhhchHHHHHHHHHHHHHHhhhHHHHHHhhhHHH
Confidence 678999988888766443 22 3467788877777765555556678889999999999999999
Q ss_pred hhHHHHHHHHHHhc
Q 003961 331 MEKTELVAALEKNR 344 (783)
Q Consensus 331 ~~~~eL~a~L~~~r 344 (783)
.++-+++..|....
T Consensus 306 rQKle~e~~l~a~q 319 (442)
T PF06637_consen 306 RQKLEAEQGLQASQ 319 (442)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988887666
No 421
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=24.12 E-value=1.2e+03 Score=27.38 Aligned_cols=40 Identities=28% Similarity=0.386 Sum_probs=27.9
Q ss_pred CCChhHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHH
Q 003961 371 FPGKEEMEQSLQKLEKDLKET-CSERDKALQELTRLKQHLI 410 (783)
Q Consensus 371 f~~kEeme~slq~L~~eL~e~-~~E~dKa~kEL~RLRqHLL 410 (783)
.|...++.+.++.++.-|.-+ ++-.+...+-|..|+++|-
T Consensus 260 vP~~~el~~~l~~~~~rL~~~~~~~l~~~~~~l~~l~~~l~ 300 (440)
T COG1570 260 VPDSAELLQQLDQLQRRLHRALRRLLDQKKQRLEHLARRLQ 300 (440)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478888888888888777654 3345566666777777754
No 422
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=23.85 E-value=1.2e+03 Score=27.31 Aligned_cols=41 Identities=24% Similarity=0.181 Sum_probs=24.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhH
Q 003961 388 LKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENN 434 (783)
Q Consensus 388 L~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreen 434 (783)
|+-...+.+.+.+||..|..+ |.. +|.-|--.-..||...|
T Consensus 252 Le~v~kdi~~a~keL~~m~~~-i~~-----eKP~WkKiWE~EL~~Vc 292 (426)
T smart00806 252 LETVQKELETARKELKKMEEY-IDI-----EKPIWKKIWEAELDKVC 292 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-Hhh-----cChHHHHHHHHHHHHHH
Confidence 455566677778888888877 433 35555422235555444
No 423
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=23.73 E-value=3e+02 Score=33.54 Aligned_cols=34 Identities=24% Similarity=0.440 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhc
Q 003961 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (783)
.+.-++|+++++.-|...|+..+.+|+..+...+
T Consensus 80 ~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n 113 (907)
T KOG2264|consen 80 ILREQKRILASVSLELTELEVKRQELNSEIEEIN 113 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3666788888888888888888888888777776
No 424
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=23.57 E-value=3e+02 Score=28.26 Aligned_cols=34 Identities=18% Similarity=0.395 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcc
Q 003961 312 VENLKRVVATLEKENNSLKMEKTELVAALEKNRK 345 (783)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~ 345 (783)
++.|...+..|.++..+++..|..|..-++.-|+
T Consensus 120 ~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARk 153 (161)
T TIGR02894 120 NEELEKELEKLRQRLSTIEEDYQTLIDIMDRARK 153 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777778888888877777764
No 425
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=23.37 E-value=1.2e+03 Score=27.00 Aligned_cols=73 Identities=18% Similarity=0.343 Sum_probs=54.5
Q ss_pred ChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003961 373 GKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLK 449 (783)
Q Consensus 373 ~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK 449 (783)
|.-.|-.+++.-..|...++.-.+|+.-+|.+.|. .+.+-..+..+|++ +|..++++|-.+..++..+-+.+.
T Consensus 86 glr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~-vf~k~k~~~q~LE~---li~~~~EEn~~lqlqL~~l~~e~~ 158 (401)
T PF06785_consen 86 GLRKIRESVEERQQESEQLQSQNQKLKNQLFHVRE-VFMKTKGDIQHLEG---LIRHLREENQCLQLQLDALQQECG 158 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHhcchHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHh
Confidence 44456666777778888888889999999999998 55555556667776 577888888888887777666554
No 426
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=23.20 E-value=45 Score=30.52 Aligned_cols=26 Identities=23% Similarity=0.497 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhhhhHHhHHHHHHH
Q 003961 555 HSEKMLAEGKGRANKLEEDNAKLRLA 580 (783)
Q Consensus 555 ~~E~~l~e~K~~~~KL~eDn~kLR~A 580 (783)
.++.++.+.+..+.++..++..|++.
T Consensus 97 ~a~~i~~~A~~~~~~l~~~~~~lk~~ 122 (131)
T PF05103_consen 97 EAEEIIEEARAEAERLREEIEELKRQ 122 (131)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555543
No 427
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=23.20 E-value=4.6e+02 Score=23.53 Aligned_cols=66 Identities=21% Similarity=0.279 Sum_probs=47.2
Q ss_pred cccCcccchhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHH
Q 003961 268 LKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEK 342 (783)
Q Consensus 268 lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~ 342 (783)
+.-|....+.++..--..|.-|+...|.+=..|-| .+-+++.-...|+.|+.++.. ++++.+++..
T Consensus 15 ~~~d~~~~~kd~~~~~~~lk~Klq~ar~~i~~lpg-----i~~s~eeq~~~i~~Le~~i~~----k~~~L~~~~~ 80 (83)
T PF07544_consen 15 ISKDPPLSSKDLDTATGSLKHKLQKARAAIRELPG-----IDRSVEEQEEEIEELEEQIRK----KREVLQKFKE 80 (83)
T ss_pred HhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC-----ccCCHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 33345666777777777777788887777666655 667899999999999999887 4555555543
No 428
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=23.13 E-value=1.3e+03 Score=27.31 Aligned_cols=66 Identities=24% Similarity=0.324 Sum_probs=43.3
Q ss_pred CChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003961 372 PGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLK 449 (783)
Q Consensus 372 ~~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK 449 (783)
|+.|+||+-+-.=+.|-+=-+.-.|-|.+|-.+||+=.+.|- +|++|+ +. ..|.+.++.+.|..=+
T Consensus 350 ~~~eeLESIVRiKqAEA~MFQ~kAdEARrEAE~LqrI~~aK~----~k~EEE------Ya--s~~~kl~l~eaee~r~ 415 (446)
T PF07227_consen 350 PQIEELESIVRIKQAEAKMFQLKADEARREAEGLQRIALAKS----EKIEEE------YA--SRYLKLRLNEAEEERK 415 (446)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHH------HH--HHHHhhhhHHHHHHHH
Confidence 578888876664444444455667999999999999988884 466653 42 2345555555554333
No 429
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=23.00 E-value=3.1e+02 Score=29.30 Aligned_cols=56 Identities=11% Similarity=0.172 Sum_probs=36.5
Q ss_pred HHHHHHHHhhccCCcchhhhHHHHHHH-----HHHHHhcCCch---HHHHHHHHhcCCCHHHHHHhhhc
Q 003961 581 VEQSMTRLNRMSVDSDFLVDRRIVIKL-----LVTYFQRNHSK---EVLDLMVRMLGFSDEDKQRIGMA 641 (783)
Q Consensus 581 Leqsl~RL~~ms~dsD~~VDRRIVtkL-----LLTYf~R~~sK---EVL~LMArMLgFSDEEK~riGL~ 641 (783)
|++.++++++.|.+. ..|+..+ -|+|-+..=++ +||.-+|..||||..+-.++-..
T Consensus 111 l~~~~~~~~~~~~~r-----~~l~~~lL~~l~~vA~ADG~l~~~E~~~L~~Ia~~Lgis~~df~~~~~~ 174 (267)
T PRK09430 111 LREKLRQFRSVCGGR-----FDLLRMFLEIQIQAAFADGSLHPNERQVLYVIAEELGFSRFQFDQLLRM 174 (267)
T ss_pred HHHHHHHHHHHhccc-----HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 566667777766221 2233333 35666643333 69999999999999988877553
No 430
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=22.90 E-value=7.4e+02 Score=28.44 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=14.1
Q ss_pred HHHHhhHHHHHhhhhhHHHhHHHHHh
Q 003961 464 SEIQKSKEIIDGLNNKLANCMRTIEA 489 (783)
Q Consensus 464 ~E~~~ske~iedL~~~L~~~mealeA 489 (783)
.++..++++|..|...++.....+.+
T Consensus 71 ~~~~~l~~~l~~l~~~~~~~~~~~~~ 96 (525)
T TIGR02231 71 ERLAELRKQIRELEAELRDLEDRGDA 96 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666665555555443333
No 431
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=22.90 E-value=1.9e+03 Score=29.23 Aligned_cols=62 Identities=19% Similarity=0.182 Sum_probs=27.2
Q ss_pred hhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHh
Q 003961 476 LNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVS 542 (783)
Q Consensus 476 L~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~ 542 (783)
|..++...-+.+..-+.++.|..- ..|. |..-.|..+.+.+-.+.+.+--..+.+...+...
T Consensus 1013 l~~q~~e~~re~~~ld~Qi~~~~~--~~~~---ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~ 1074 (1294)
T KOG0962|consen 1013 LERKLKELERELSELDKQILEADI--KSVK---EERVKLEEEREKLSSEKNLLLGEMKQYESQIKKL 1074 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHH--HHHH---HHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHH
Confidence 344444444455555556666551 1121 2223444444444444333333344444444433
No 432
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=22.86 E-value=8.5e+02 Score=28.98 Aligned_cols=29 Identities=24% Similarity=0.224 Sum_probs=12.5
Q ss_pred HhhhHHHHHHHhhhhhhhhhHHhHHHHHH
Q 003961 551 VKLSHSEKMLAEGKGRANKLEEDNAKLRL 579 (783)
Q Consensus 551 ~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ 579 (783)
.|+-+.+..+..+.++..-+++.+..|++
T Consensus 382 ~k~~q~q~k~~k~~kel~~~~E~n~~l~k 410 (493)
T KOG0804|consen 382 RKLQQLQTKLKKCQKELKEEREENKKLIK 410 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444
No 433
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.68 E-value=1.4e+03 Score=27.45 Aligned_cols=21 Identities=29% Similarity=0.256 Sum_probs=11.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHH
Q 003961 430 LRENNEYQRAQILHLENVLKQ 450 (783)
Q Consensus 430 LreenE~~R~~Is~lEraLK~ 450 (783)
|...+-..+.+++.+|..+|-
T Consensus 260 les~~sq~~e~~selE~llkl 280 (521)
T KOG1937|consen 260 LESKRSQFEEQNSELEKLLKL 280 (521)
T ss_pred HHhhhHHHHHHHHHHHHHHHh
Confidence 434444556666777765554
No 434
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=22.56 E-value=1.2e+03 Score=26.76 Aligned_cols=20 Identities=20% Similarity=0.316 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHhhcc
Q 003961 573 DNAKLRLAVEQSMTRLNRMS 592 (783)
Q Consensus 573 Dn~kLR~ALeqsl~RL~~ms 592 (783)
....+|+||.+-|.+|+.+.
T Consensus 176 ~l~~lR~Aia~DI~~L~av~ 195 (390)
T PRK10920 176 SLITVRRAITDDIATLSAVS 195 (390)
T ss_pred chHHHHHHHHHHHHHHHcCC
Confidence 34689999999999998876
No 435
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=22.50 E-value=1.7e+03 Score=28.55 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHHhh
Q 003961 495 LNLQTALGQYFAEIEAKG 512 (783)
Q Consensus 495 ~NLQtALgqfqAE~EA~E 512 (783)
.-++..|-+|.|.+||..
T Consensus 768 s~~~e~~~~~ea~leaer 785 (988)
T KOG2072|consen 768 SEYEEKLKQFEARLEAER 785 (988)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346778899999998854
No 436
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.50 E-value=1.1e+03 Score=26.09 Aligned_cols=18 Identities=22% Similarity=-0.073 Sum_probs=9.9
Q ss_pred hHhhHHHHHHHHHHHHHH
Q 003961 493 ELLNLQTALGQYFAEIEA 510 (783)
Q Consensus 493 El~NLQtALgqfqAE~EA 510 (783)
-|.||+.+..++.+-.+.
T Consensus 181 ~l~~l~~~~~~ln~~~~~ 198 (359)
T COG1463 181 LLDNLAQFTDALNARDGD 198 (359)
T ss_pred HHHHHHHHHHHHHhcchh
Confidence 445566666655555543
No 437
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.10 E-value=6.6e+02 Score=25.04 Aligned_cols=34 Identities=32% Similarity=0.299 Sum_probs=17.4
Q ss_pred HHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHH
Q 003961 465 EIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQ 498 (783)
Q Consensus 465 E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQ 498 (783)
+..+.+++|++|+++|......+++--.+..||+
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666664444444333444443
No 438
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=22.01 E-value=1.1e+03 Score=26.31 Aligned_cols=29 Identities=28% Similarity=0.345 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHhHHHHHh
Q 003961 228 SQTRQLRMELEQQRNKFADVQLKLQEEQR 256 (783)
Q Consensus 228 ~~i~~l~~el~~~~~k~~~~~~~lqee~k 256 (783)
.+|...+.+|+....++..--..|.++..
T Consensus 53 ~di~~wk~eL~~~l~~~~~Ei~~L~~~K~ 81 (384)
T PF03148_consen 53 RDIRFWKNELERELEELDEEIDLLEEEKR 81 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777776666554444444433
No 439
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=21.90 E-value=1.7e+02 Score=25.38 Aligned_cols=30 Identities=13% Similarity=0.318 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHHH
Q 003961 312 VENLKRVVATLEKENNSLKMEKTELVAALE 341 (783)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~ 341 (783)
+.++...+.++++||+.++-....++..+.
T Consensus 9 ~~~~~~~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 9 LPRIESSINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666777777777666666666554
No 440
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.85 E-value=1.4e+03 Score=27.37 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=21.1
Q ss_pred ChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003961 373 GKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIE 411 (783)
Q Consensus 373 ~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe 411 (783)
+-++|.+-+.--..+++--|.-++....++.+|.+|-++
T Consensus 335 GF~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad 373 (508)
T KOG3091|consen 335 GFEDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHAD 373 (508)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 556766555432333333344445566677778765333
No 441
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=21.72 E-value=1.8e+02 Score=29.81 Aligned_cols=31 Identities=19% Similarity=0.184 Sum_probs=25.0
Q ss_pred HHhhhhhhhhhHHhHHHHHHHHHHHHHHHhh
Q 003961 560 LAEGKGRANKLEEDNAKLRLAVEQSMTRLNR 590 (783)
Q Consensus 560 l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ 590 (783)
..+|+.++.|+++++..||..|..=-+++..
T Consensus 31 ~eeLr~EL~KvEeEI~TLrqvL~aKer~~~e 61 (162)
T PF04201_consen 31 REELRSELAKVEEEIQTLRQVLAAKERHCAE 61 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4678889999999999999998766665544
No 442
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=21.71 E-value=1.7e+02 Score=25.32 Aligned_cols=51 Identities=22% Similarity=0.330 Sum_probs=36.1
Q ss_pred HHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccC
Q 003961 292 ELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSS 347 (783)
Q Consensus 292 ei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~ 347 (783)
-|-.|++.|.- ..++++.|-.++....++...|+.+...|...|..++..+
T Consensus 5 Ri~~LE~~la~-----qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~~ 55 (69)
T PF04102_consen 5 RIEELEIKLAF-----QEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELEDPS 55 (69)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 35567777764 4578999999999999999999999999999999988443
No 443
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=21.67 E-value=1.9e+03 Score=28.67 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 003961 377 MEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEK 412 (783)
Q Consensus 377 me~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~ 412 (783)
|+..+..=...|.-+..+.++..+++.++|+...-+
T Consensus 193 Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~ 228 (1072)
T KOG0979|consen 193 LEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKK 228 (1072)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444445555666677777777776654443
No 444
>PF08703 PLC-beta_C: PLC-beta C terminal; InterPro: IPR014815 This domain corresponds to the alpha helical C-terminal domain of phospholipase C beta. ; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1JAD_A.
Probab=21.45 E-value=9.5e+02 Score=25.14 Aligned_cols=90 Identities=24% Similarity=0.427 Sum_probs=51.8
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCcccchhHHHHHHHHHh-----hhHHHHHHH
Q 003961 222 ERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELN-----GKLSELRRL 296 (783)
Q Consensus 222 ~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~-----ek~sei~rl 296 (783)
+...|..|+|+|+.-++++- .+++.+|+-. +-.+.+ -++.+||.. .+.+-+|+| +=+.+|+||
T Consensus 50 ~~e~Q~~QlK~LKe~~EkE~---KElkK~L~~k--r~e~I~-----~k~~~dK~e--~er~KrEin~s~I~e~V~~ikrL 117 (185)
T PF08703_consen 50 ARECQAAQLKKLKETCEKET---KELKKKLDRK--RLESIK-----EKKTKDKDE--QERLKREINRSHIQEVVQEIKRL 117 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH--HHHHHH-----HTT---HHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhH---HHHHHHHhHH--HHHHHH-----HhhcccHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678899987777554 5666666543 333333 344444433 344445554 558899999
Q ss_pred HHHhcccccCCcchHHHHHHHHHHHHHHhhh
Q 003961 297 QMELNRREDGDANDVVENLKRVVATLEKENN 327 (783)
Q Consensus 297 q~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~ 327 (783)
.+...++.+ .....-+.++..|+.+..
T Consensus 118 ~~~qekrqe----kL~~kh~e~lq~i~ee~~ 144 (185)
T PF08703_consen 118 EEKQEKRQE----KLEEKHEEVLQQIEEEEK 144 (185)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 888888654 344555555555555543
No 445
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=21.35 E-value=5.1e+02 Score=24.97 Aligned_cols=56 Identities=36% Similarity=0.484 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHH
Q 003961 373 GKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLEN 446 (783)
Q Consensus 373 ~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEr 446 (783)
.+-+|=..+..|+..|..+ ..++..||+++.+.-+|-- .|+-+|+..|..+..++.
T Consensus 2 dk~elfd~l~~le~~l~~l-------~~el~~LK~~~~el~EEN~-----------~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 2 DKKEIFDALDDLEQNLGVL-------LKELGALKKQLAELLEENT-----------ALRLENDKLRERLEELEA 57 (110)
T ss_pred chhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhc
No 446
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=21.24 E-value=6.8e+02 Score=23.36 Aligned_cols=54 Identities=24% Similarity=0.245 Sum_probs=26.3
Q ss_pred hhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003961 478 NKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKN 534 (783)
Q Consensus 478 ~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~ 534 (783)
..+..++..|...-..|.+|+..|+.-.. +...+...|..+..++..++..++.
T Consensus 9 ~~I~~~i~~i~~~v~~l~~l~~~~~t~~~---~~~~~~~~l~~~~~~~~~~~~~ik~ 62 (151)
T cd00179 9 EEIRGNIDKISEDVEELQKLHSQLLTAPD---ADPELKQELESLVQEIKKLAKEIKG 62 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555544455666655544332 2234455555555555554444333
No 447
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.22 E-value=1.7e+03 Score=27.99 Aligned_cols=41 Identities=17% Similarity=0.111 Sum_probs=34.0
Q ss_pred HHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHH
Q 003961 466 IQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFA 506 (783)
Q Consensus 466 ~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqA 506 (783)
+..+...|.++++++.+--..|.+|++.+.||+.|=.-.--
T Consensus 123 v~~lqs~i~riknd~~epyk~i~~kt~vl~rLhva~~lLrr 163 (797)
T KOG2211|consen 123 VAELQSEIKRIKNDNKEPYKIIWLKTMVLTRLHVAENLLRR 163 (797)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556889999999999999999999999999998655443
No 448
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=21.21 E-value=1.1e+03 Score=25.88 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=11.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHH
Q 003961 279 ITEMRKELNGKLSELRRLQME 299 (783)
Q Consensus 279 ~~~~~~el~ek~sei~rlq~~ 299 (783)
+..|.+-+.+-+.+.++++-+
T Consensus 24 ~~~L~kk~~ell~e~k~~~k~ 44 (309)
T PF09728_consen 24 LEALCKKYAELLEEMKRLQKQ 44 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555443
No 449
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=21.17 E-value=1.4e+03 Score=27.03 Aligned_cols=38 Identities=21% Similarity=0.200 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 003961 376 EMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKA 413 (783)
Q Consensus 376 eme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E 413 (783)
+++..++.-.+.-.....++.....|-..+|.|+-.+|
T Consensus 17 ~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E 54 (459)
T KOG0288|consen 17 DLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKE 54 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444455555555556566666654443
No 450
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=21.12 E-value=4.2e+02 Score=22.86 Aligned_cols=73 Identities=14% Similarity=0.198 Sum_probs=37.4
Q ss_pred hhhhhhhhHHhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHh--cCCchHHHHHHHHhcC-CCHHHHHH
Q 003961 563 GKGRANKLEEDNAKLRLAVEQSMTRLNRMSVDSDFLVDRRIVIKLLVTYFQ--RNHSKEVLDLMVRMLG-FSDEDKQR 637 (783)
Q Consensus 563 ~K~~~~KL~eDn~kLR~ALeqsl~RL~~ms~dsD~~VDRRIVtkLLLTYf~--R~~sKEVL~LMArMLg-FSDEEK~r 637 (783)
++....+...+...+|..+......|.... ....+|.--|..++=.-.. ..-...++..+..+.. .|+|+|++
T Consensus 50 l~~~~~~~~~~~~~~r~~~~~~r~~l~~ll--~~~~~D~~~i~a~~~~~~~~~~~l~~~~~~~~~~~~~~LtpeQR~~ 125 (125)
T PF13801_consen 50 LRALMDEFRQEMRALRQELRAARQELRALL--AAPPPDEAAIEALLEEIREAQAELRQERLEHLLEIRAVLTPEQRAR 125 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-GGGHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC
Confidence 333344444455555555555555555555 2235777766666554444 1112256666666554 67777754
No 451
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=21.03 E-value=5.4e+02 Score=22.63 Aligned_cols=77 Identities=13% Similarity=0.175 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCC-CCCChhHHHHHHHHHHHHH
Q 003961 310 DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSE-SFPGKEEMEQSLQKLEKDL 388 (783)
Q Consensus 310 ~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~-sf~~kEeme~slq~L~~eL 388 (783)
+.++.+..-+..|..--..|...+..+..+|...... .... .|..- .-..-+..+++.+
T Consensus 14 P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~-------------------~~~~~~~~~~-~y~~KL~~ikkrm 73 (92)
T PF14712_consen 14 PDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEV-------------------EQINEPFDLD-PYVKKLVNIKKRM 73 (92)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------------hhhhhHHHhh-HHHHHHHHHHHHH
Confidence 4667777777777777777777778887777777621 0100 01111 1334466677777
Q ss_pred HHhHHHHHHHHHHHHHHH
Q 003961 389 KETCSERDKALQELTRLK 406 (783)
Q Consensus 389 ~e~~~E~dKa~kEL~RLR 406 (783)
...+.-..++..-+.+|.
T Consensus 74 ~~l~~~l~~lk~R~~~L~ 91 (92)
T PF14712_consen 74 SNLHERLQKLKKRADKLQ 91 (92)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 777666666666666654
No 452
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=20.88 E-value=1.2e+03 Score=27.91 Aligned_cols=130 Identities=17% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhhccCC
Q 003961 515 ERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRMSVD 594 (783)
Q Consensus 515 e~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ms~d 594 (783)
..++....+++..+...=+..... ..++.+.+.++-. .+..+.+-.-.-.-..++-.+++..|.+...
T Consensus 514 ~~~i~~~~~~~~~~~~~d~~~~~~-~eakN~lEs~Iy~---~r~~L~~~~~~~~~t~ee~~~l~~~l~~~~~-------- 581 (653)
T PTZ00009 514 KADIDRMVNEAEKYKAEDEANRER-VEAKNGLENYCYS---MKNTLQDEKVKGKLSDSDKATIEKAIDEALE-------- 581 (653)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHH-HHHHhhhHHHHHH---HHHHHhhhhhhccCCHHHHHHHHHHHHHHHH--------
Q ss_pred cchhhhHHHHHHHHHHHHhcCCch---HHHHHHHHhcCCCHHHHHHhhhcccCCCCCcccccccCCCcccccccCCCCcc
Q 003961 595 SDFLVDRRIVIKLLVTYFQRNHSK---EVLDLMVRMLGFSDEDKQRIGMAQQGAGKGVVRGVLGLPGRLVGGIIGGSQAD 671 (783)
Q Consensus 595 sD~~VDRRIVtkLLLTYf~R~~sK---EVL~LMArMLgFSDEEK~riGL~~q~~g~G~~rgv~g~pgRlvgg~~Gg~s~~ 671 (783)
||..++.. ++-+-+..+..+-+.=..|+ ...+|+|+.. |.||-..||.-|+..+.
T Consensus 582 ----------------wL~~~~~~~~~~~~~kl~eL~~~~~pi~~r~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 639 (653)
T PTZ00009 582 ----------------WLEKNQLAEKEEFEHKQKEVESVCNPIMTKM---YQAAGGGMPG---GMPGGMPGGMPGGAGPA 639 (653)
T ss_pred ----------------HHhcCCchhHHHHHHHHHHHHHHHHHHHHHH---HhhccCCCCC---CCCCCCCCCCCCCCCCC
Q ss_pred chhhhcc
Q 003961 672 ANAKMAS 678 (783)
Q Consensus 672 ~~~~~~~ 678 (783)
..-.+.+
T Consensus 640 ~~~~~~~ 646 (653)
T PTZ00009 640 GAGASSG 646 (653)
T ss_pred CCCCCCC
No 453
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=20.84 E-value=8.8e+02 Score=28.54 Aligned_cols=88 Identities=17% Similarity=0.245 Sum_probs=53.8
Q ss_pred HhhHHHHHHHHHHHHHHhhhhHHHHHHHHHH---HHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhh
Q 003961 494 LLNLQTALGQYFAEIEAKGHLERELALAREE---SAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKL 570 (783)
Q Consensus 494 l~NLQtALgqfqAE~EA~ErLe~ELa~aree---~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL 570 (783)
+.+++.+|.+..+.. .+.|-.++.- +..|+..|..-...++........+..|-..+...+....-.+..|
T Consensus 406 l~~V~~ii~~Lt~~~------~~~L~~Ik~SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l 479 (507)
T PF05600_consen 406 LSAVEEIISQLTNPR------TQHLFMIKSSPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDAL 479 (507)
T ss_pred HHHHHHHHHHhcCHH------HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 345566677666666 4444444443 5556666655555555555444445555555555666666677777
Q ss_pred HHhHHHHHHHHHHHHHH
Q 003961 571 EEDNAKLRLAVEQSMTR 587 (783)
Q Consensus 571 ~eDn~kLR~ALeqsl~R 587 (783)
....-.|+..++..|-.
T Consensus 480 ~~~Tr~Lq~~iE~~ISk 496 (507)
T PF05600_consen 480 VERTRELQKQIEADISK 496 (507)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78888888888887764
No 454
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=20.82 E-value=1.5e+03 Score=27.08 Aligned_cols=65 Identities=20% Similarity=0.078 Sum_probs=35.2
Q ss_pred hhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHH-------hhhhHHHHHHhhhHHHHH
Q 003961 492 VELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEV-------SRSEKEEILVKLSHSEKM 559 (783)
Q Consensus 492 vEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~-------~~kEKeei~~KLs~~E~~ 559 (783)
.++.|||.-+.|.--|- .+|+...++++--..+|+..+-...+.+++ -.+.+..+..+|++++..
T Consensus 297 le~Enlqmr~qqleeen---telRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~e 368 (502)
T KOG0982|consen 297 LEKENLQMRDQQLEEEN---TELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEE 368 (502)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46678888777765444 345666666665555554433333333333 234444455677775443
No 455
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=20.73 E-value=1.3e+03 Score=26.29 Aligned_cols=119 Identities=24% Similarity=0.232 Sum_probs=71.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHH-------HHhhhhHHHHHHh-hhHHHHHHHhhh-hhhhhhHH
Q 003961 502 GQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRA-------EVSRSEKEEILVK-LSHSEKMLAEGK-GRANKLEE 572 (783)
Q Consensus 502 gqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~i-------e~~~kEKeei~~K-Ls~~E~~l~e~K-~~~~KL~e 572 (783)
+.|+.|.+|.++|+.=.+-....+.+.-+.|+...... +..+.++++.+.+ |..++..-.+++ ....|+=.
T Consensus 76 ~~~~~E~d~~~~l~~~v~d~~rri~~~kerL~e~~ee~~~e~~~k~~~v~~l~e~I~~~l~~~E~LG~eG~Veeaq~~~~ 155 (319)
T KOG0796|consen 76 RDYGYEWDALEILERFVADVDRRIEKAKERLAETVEERSEEAARKAEKVHELEEKIGKLLEKAEELGEEGNVEEAQKAMK 155 (319)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 45677777777776655555555444444455442211 1224455555543 456666666666 57778888
Q ss_pred hHHHHHH-HHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHhcCCch-HHHHHHHHhcCCCHHHHHH
Q 003961 573 DNAKLRL-AVEQSMTRLNRMSVDSDFLVDRRIVIKLLVTYFQRNHSK-EVLDLMVRMLGFSDEDKQR 637 (783)
Q Consensus 573 Dn~kLR~-ALeqsl~RL~~ms~dsD~~VDRRIVtkLLLTYf~R~~sK-EVL~LMArMLgFSDEEK~r 637 (783)
.++.|+. .++.+....+-....+ .-++.| +|-+.-..+|+.+|-+++.
T Consensus 156 e~E~lk~~e~e~~~~~~~~~~~~~-----------------~~~~qkl~VCeVCGa~L~~~D~d~Rl 205 (319)
T KOG0796|consen 156 EVEELKAKEKEEAEESYNTTMPGA-----------------SAQQQKLRVCEVCGAFLSVNDADRRL 205 (319)
T ss_pred HHHHHHHHHHHHHHHHHccCcchh-----------------hhhhhhhhHHHhhhHHHhccchHHHH
Confidence 8888887 5665555443322111 124455 8999999999999988763
No 456
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=20.66 E-value=9.6e+02 Score=25.80 Aligned_cols=80 Identities=15% Similarity=0.317 Sum_probs=0.0
Q ss_pred hhHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------------hHHHHhhHHHHHhhhhhHHHhHHH
Q 003961 423 DSKIIEELRE---NNEYQRAQILHLENVLKQTLAKQEEFKMMN-------------HSEIQKSKEIIDGLNNKLANCMRT 486 (783)
Q Consensus 423 d~k~IeELre---enE~~R~~Is~lEraLK~~~a~qeelk~~n-------------~~E~~~ske~iedL~~~L~~~mea 486 (783)
+.++|.+|.. .+...|..|-....+-.+++.++..|..+. +.++++..-...+-.+.|.++|..
T Consensus 92 E~KVv~pL~~Y~~~cK~~r~elK~~~~ar~kEikq~~~Leklr~k~psdr~~isqae~el~kas~~~~rt~~~Lee~i~~ 171 (219)
T PF06730_consen 92 EAKVVEPLSQYGTICKHARDELKKFNKARNKEIKQLKQLEKLRQKNPSDRQIISQAESELQKASVDATRTTKQLEETIDN 171 (219)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhhHhhHHHHHHHH
Q 003961 487 IEAKNVELLNLQTALGQY 504 (783)
Q Consensus 487 leAKnvEl~NLQtALgqf 504 (783)
.+. .-|.-|+..|..|
T Consensus 172 FEk--qKl~DlK~i~sdF 187 (219)
T PF06730_consen 172 FEK--QKLKDLKKIFSDF 187 (219)
T ss_pred HHH--HHHHHHHHHHHHH
No 457
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=20.42 E-value=7.5e+02 Score=23.53 Aligned_cols=20 Identities=15% Similarity=0.278 Sum_probs=10.0
Q ss_pred HHHHHhhhhhHHHhHHHHHh
Q 003961 470 KEIIDGLNNKLANCMRTIEA 489 (783)
Q Consensus 470 ke~iedL~~~L~~~mealeA 489 (783)
...++.++..+.+.+...+.
T Consensus 30 ~~~l~~R~~~I~~~l~~a~~ 49 (156)
T PRK05759 30 MKALEERQKKIADGLAAAER 49 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544333
No 458
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.40 E-value=2.7e+02 Score=31.77 Aligned_cols=62 Identities=23% Similarity=0.269 Sum_probs=33.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHH
Q 003961 280 TEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEK 342 (783)
Q Consensus 280 ~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~ 342 (783)
.+||.-..|++-...-+|..|.|++ |+....-..|+.|+++|+-+...|.+++.=|..+.+.
T Consensus 217 eklR~r~eeeme~~~aeq~slkRt~-EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 217 EKLRRRREEEMERLQAEQESLKRTE-EELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH-HHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3444444444444444455554433 2233344556666666666666666666666555544
No 459
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=20.24 E-value=1e+03 Score=24.96 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=28.9
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 003961 367 SSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEK 412 (783)
Q Consensus 367 ~~~sf~~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~ 412 (783)
.++.||..--|+.+++.+...|.....-.+....-+.-+..++...
T Consensus 12 ~t~~~~~~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L 57 (264)
T PF06008_consen 12 LTGAWPAPYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESL 57 (264)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 4456677777888888888777776655555444455554444433
No 460
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=20.19 E-value=1.1e+03 Score=25.21 Aligned_cols=41 Identities=24% Similarity=0.391 Sum_probs=25.4
Q ss_pred CChhHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHH
Q 003961 372 PGKEEMEQSLQKLEKDLKET-CSERDKALQELTRLKQHLIEK 412 (783)
Q Consensus 372 ~~kEeme~slq~L~~eL~e~-~~E~dKa~kEL~RLRqHLLe~ 412 (783)
|...++...+..+...|... ....+...+.|..|..++...
T Consensus 143 ~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~L~~l~~~l~~~ 184 (319)
T PF02601_consen 143 PDRRELLQRLDELRQRLNRAMRNRLQRKRQRLNQLAKRLQLQ 184 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45666666666666665544 444566666777777775544
No 461
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=20.14 E-value=1.8e+03 Score=27.85 Aligned_cols=106 Identities=22% Similarity=0.319 Sum_probs=51.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHh-----------hhhhhhHHHhHHHHHhhch-----HHHHHHhhcccCcc-cchh----H
Q 003961 220 AAERAAYESQTRQLRMELEQQ-----------RNKFADVQLKLQEEQRLNE-----SFQDELKSLKMDKD-KTSI----E 278 (783)
Q Consensus 220 aa~qa~~~~~i~~l~~el~~~-----------~~k~~~~~~~lqee~k~n~-----~fqe~l~~lk~~~~-kts~----~ 278 (783)
|.....+....--||.|+.+- .+|.+ +++-+=-+++.+ ++++-|.-||..-. |... .
T Consensus 478 A~~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~eK~~--kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~~~~~s~g~~~ 555 (762)
T PLN03229 478 AVIAMGLQERLENLREEFSKANSQDQLMHPVLMEKIE--KLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRAKALSEKKSK 555 (762)
T ss_pred hhhhhhHHHHHHHHHHHHHhcccccccccHHHHHHHH--HHHHHHHHhhhcccccHHHHHHHHHHHHHHHhhhhcccchh
Confidence 444455556666666666652 22211 122222244444 55555555554321 1111 1
Q ss_pred HHHHHHHHhhhHHH------HHHH-H---HHhcccccCCcchHHHHHHHHHHHHHHhhh
Q 003961 279 ITEMRKELNGKLSE------LRRL-Q---MELNRREDGDANDVVENLKRVVATLEKENN 327 (783)
Q Consensus 279 ~~~~~~el~ek~se------i~rl-q---~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~ 327 (783)
..+|..|||+|+-| ++.= + .++-.-.-.-..+.-+.||..|+.+.+|.+
T Consensus 556 a~~Lk~ei~kki~e~~~~~~~kek~ea~~aev~~~g~s~~~~~~~~lkeki~~~~~Ei~ 614 (762)
T PLN03229 556 AEKLKAEINKKFKEVMDRPEIKEKMEALKAEVASSGASSGDELDDDLKEKVEKMKKEIE 614 (762)
T ss_pred hhhhhHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHHH
Confidence 56777888888777 4431 1 111111122222566677777777776654
Done!