Query 003961
Match_columns 783
No_of_seqs 47 out of 49
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 09:39:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003961.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003961hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 98.6 0.00027 9.4E-09 65.0 36.6 37 554-590 247-283 (284)
2 1i84_S Smooth muscle myosin he 98.5 1.8E-07 6.2E-12 109.9 7.7 25 228-252 857-881 (1184)
3 1c1g_A Tropomyosin; contractIl 98.4 0.0012 4.2E-08 60.7 35.2 20 559-578 259-278 (284)
4 1i84_S Smooth muscle myosin he 98.3 3.1E-07 1.1E-11 107.9 5.9 32 237-268 859-890 (1184)
5 3vkg_A Dynein heavy chain, cyt 97.3 0.031 1.1E-06 72.8 27.0 203 376-618 1921-2123(3245)
6 3na7_A HP0958; flagellar bioge 97.0 0.13 4.3E-06 51.4 22.5 46 464-509 97-142 (256)
7 2dfs_A Myosin-5A; myosin-V, in 96.5 0.034 1.2E-06 66.0 15.9 91 241-343 927-1017(1080)
8 3vkg_A Dynein heavy chain, cyt 96.1 1.3 4.4E-05 58.4 28.1 220 278-546 1867-2086(3245)
9 3na7_A HP0958; flagellar bioge 95.7 1.9 6.4E-05 43.1 23.2 16 465-480 68-83 (256)
10 2v71_A Nuclear distribution pr 95.1 1.8 6.3E-05 42.9 18.9 129 376-532 46-177 (189)
11 1go4_E MAD1 (mitotic arrest de 94.5 0.088 3E-06 47.7 7.2 85 310-414 12-96 (100)
12 3oja_B Anopheles plasmodium-re 94.5 0.27 9.2E-06 52.6 12.2 22 387-408 510-531 (597)
13 2dfs_A Myosin-5A; myosin-V, in 94.3 0.98 3.3E-05 53.9 17.6 61 378-445 983-1043(1080)
14 1wt6_A Myotonin-protein kinase 93.6 0.31 1.1E-05 43.0 8.6 48 491-541 9-56 (81)
15 3oja_B Anopheles plasmodium-re 92.7 1.8 6.2E-05 46.3 14.9 79 512-590 505-583 (597)
16 2v71_A Nuclear distribution pr 92.1 10 0.00035 37.6 20.0 77 515-592 94-170 (189)
17 1upt_B Golgi autoantigen, golg 90.1 0.35 1.2E-05 40.6 4.7 39 603-642 9-47 (60)
18 3hnw_A Uncharacterized protein 87.1 4.8 0.00016 37.8 10.8 65 381-449 70-134 (138)
19 2v4h_A NF-kappa-B essential mo 84.6 7.7 0.00026 35.9 10.5 32 472-503 25-56 (110)
20 3ghg_A Fibrinogen alpha chain; 80.4 6.8 0.00023 44.2 10.1 83 493-585 100-189 (562)
21 3a7p_A Autophagy protein 16; c 79.4 23 0.00078 34.4 12.1 56 392-451 67-122 (152)
22 3ghg_A Fibrinogen alpha chain; 78.8 4.2 0.00014 45.9 7.8 102 318-447 51-153 (562)
23 2ocy_A RAB guanine nucleotide 77.3 54 0.0019 31.7 15.2 46 543-588 85-131 (154)
24 3oja_A Leucine-rich immune mol 75.9 54 0.0018 34.6 15.0 29 425-453 442-470 (487)
25 3ol1_A Vimentin; structural ge 75.2 33 0.0011 31.1 11.5 42 461-509 17-58 (119)
26 3oja_A Leucine-rich immune mol 74.7 36 0.0012 35.8 13.3 30 384-413 365-394 (487)
27 3thf_A Protein shroom; coiled- 74.3 63 0.0022 32.3 13.9 72 513-613 70-143 (190)
28 2e7s_A RAB guanine nucleotide 73.8 8.2 0.00028 36.7 7.3 87 489-578 43-130 (135)
29 1deq_A Fibrinogen (alpha chain 72.0 31 0.001 37.7 12.0 73 318-413 54-126 (390)
30 2l7b_A Apolipoprotein E, APO-E 71.0 18 0.00062 37.7 9.8 96 383-508 100-196 (307)
31 3tnu_B Keratin, type II cytosk 70.9 62 0.0021 29.4 12.5 28 513-540 72-99 (129)
32 3o0z_A RHO-associated protein 70.5 17 0.00059 35.6 8.9 58 214-271 55-112 (168)
33 3s84_A Apolipoprotein A-IV; fo 70.4 1E+02 0.0034 31.6 22.4 21 570-590 174-194 (273)
34 2ocy_A RAB guanine nucleotide 70.3 81 0.0028 30.5 16.1 87 490-579 56-143 (154)
35 3i00_A HIP-I, huntingtin-inter 69.9 36 0.0012 31.5 10.5 66 310-412 15-80 (120)
36 3tnu_A Keratin, type I cytoske 69.9 58 0.002 29.7 11.9 28 513-540 74-101 (131)
37 2zqm_A Prefoldin beta subunit 69.7 27 0.00094 30.2 9.3 93 311-410 14-108 (117)
38 3swk_A Vimentin; cytoskeleton, 69.3 24 0.00083 30.6 8.8 37 491-527 20-60 (86)
39 4e61_A Protein BIM1; EB1-like 68.0 15 0.00052 33.7 7.5 50 515-564 10-59 (106)
40 3jsv_C NF-kappa-B essential mo 67.8 20 0.00069 32.4 8.1 35 472-506 3-37 (94)
41 1go4_E MAD1 (mitotic arrest de 67.3 9.2 0.00032 34.7 5.9 36 370-409 6-42 (100)
42 2efr_A General control protein 67.1 93 0.0032 30.0 21.8 53 381-451 2-54 (155)
43 2eqb_B RAB guanine nucleotide 66.7 76 0.0026 28.8 13.0 48 515-562 46-94 (97)
44 2v4h_A NF-kappa-B essential mo 65.0 32 0.0011 31.9 9.0 81 418-527 19-101 (110)
45 3kbt_A Beta-I spectrin, spectr 64.3 1.1E+02 0.0038 29.9 24.7 67 278-344 5-71 (326)
46 1f5n_A Interferon-induced guan 62.8 85 0.0029 35.4 13.7 91 385-479 486-582 (592)
47 3qh9_A Liprin-beta-2; coiled-c 61.7 34 0.0012 30.3 8.2 56 233-303 24-80 (81)
48 1m1j_A Fibrinogen alpha subuni 60.9 1.3E+02 0.0043 33.8 14.2 107 318-451 52-158 (491)
49 1fxk_A Prefoldin; archaeal pro 60.7 41 0.0014 28.7 8.5 91 312-409 10-102 (107)
50 3nmd_A CGMP dependent protein 60.5 18 0.00062 31.3 6.1 34 466-506 35-68 (72)
51 2efr_A General control protein 59.5 1.3E+02 0.0044 29.0 18.7 65 521-592 75-139 (155)
52 3mq7_A Bone marrow stromal ant 58.9 1.2E+02 0.0041 28.5 11.9 42 498-539 11-55 (121)
53 1t2k_D Cyclic-AMP-dependent tr 58.6 16 0.00055 29.5 5.3 37 375-411 25-61 (61)
54 3o0z_A RHO-associated protein 57.9 1.5E+02 0.005 29.2 20.0 65 491-558 68-132 (168)
55 1deq_A Fibrinogen (alpha chain 56.8 1.1E+02 0.0037 33.6 12.6 50 486-541 96-145 (390)
56 1p9i_A Cortexillin I/GCN4 hybr 56.7 9.3 0.00032 28.1 3.1 29 312-340 1-29 (31)
57 3cve_A Homer protein homolog 1 55.9 50 0.0017 28.5 8.1 37 373-409 15-51 (72)
58 3mq9_A Bone marrow stromal ant 55.3 1.2E+02 0.0042 31.7 12.7 82 497-581 382-466 (471)
59 3trt_A Vimentin; cytoskeleton, 54.7 30 0.001 28.7 6.4 63 219-301 11-73 (77)
60 3s84_A Apolipoprotein A-IV; fo 52.5 2.1E+02 0.0071 29.3 25.5 74 511-590 171-245 (273)
61 1nfn_A Apolipoprotein E3; lipi 52.1 1.4E+02 0.0049 28.9 11.7 19 395-413 101-119 (191)
62 2a01_A Apolipoprotein A-I; fou 51.9 1.9E+02 0.0065 28.7 14.8 117 375-508 51-170 (243)
63 3hnw_A Uncharacterized protein 51.7 1.6E+02 0.0053 27.6 12.4 25 555-579 107-131 (138)
64 1ic2_A Tropomyosin alpha chain 51.5 1.1E+02 0.0038 25.9 10.2 36 555-590 38-73 (81)
65 3s4r_A Vimentin; alpha-helix, 51.2 1E+02 0.0036 27.0 9.6 36 470-505 8-43 (93)
66 3tnu_B Keratin, type II cytosk 51.2 1.4E+02 0.0049 27.0 11.2 13 514-526 87-99 (129)
67 2eqb_B RAB guanine nucleotide 49.5 1.5E+02 0.0052 26.9 12.5 38 544-581 54-92 (97)
68 1m1j_A Fibrinogen alpha subuni 48.6 1.4E+02 0.0049 33.4 12.2 48 488-541 96-143 (491)
69 3a7p_A Autophagy protein 16; c 45.9 1.6E+02 0.0054 28.6 10.6 38 508-545 67-104 (152)
70 2a01_A Apolipoprotein A-I; fou 45.6 2.4E+02 0.0081 28.0 14.2 58 298-359 36-94 (243)
71 4efa_E V-type proton ATPase su 44.8 2.3E+02 0.0078 27.6 14.5 49 563-613 82-130 (233)
72 4gkw_A Spindle assembly abnorm 44.6 1.6E+02 0.0056 28.3 10.4 58 550-607 45-103 (167)
73 3tnu_A Keratin, type I cytoske 44.3 78 0.0027 28.9 8.1 92 208-302 11-102 (131)
74 2fxo_A Myosin heavy chain, car 43.8 1.9E+02 0.0065 26.3 15.9 32 552-583 91-122 (129)
75 3qh9_A Liprin-beta-2; coiled-c 42.7 93 0.0032 27.5 7.8 23 429-451 30-52 (81)
76 1x79_B RAB GTPase binding effe 41.4 37 0.0013 31.4 5.4 33 312-344 8-40 (112)
77 3cl3_D NF-kappa-B essential mo 41.3 50 0.0017 31.4 6.3 69 381-453 4-76 (130)
78 1t6f_A Geminin; coiled-coil, c 41.2 25 0.00084 27.2 3.5 23 277-299 7-29 (37)
79 2l7b_A Apolipoprotein E, APO-E 40.8 3.2E+02 0.011 28.5 12.9 51 374-433 138-188 (307)
80 3cvf_A Homer-3, homer protein 40.2 76 0.0026 27.8 6.9 37 373-409 21-57 (79)
81 2yy0_A C-MYC-binding protein; 39.1 29 0.00098 28.1 3.8 32 310-341 19-50 (53)
82 2b9c_A Striated-muscle alpha t 39.0 2.6E+02 0.0088 26.5 13.0 78 521-598 50-127 (147)
83 1ci6_A Transcription factor AT 38.6 70 0.0024 26.2 6.1 37 375-411 26-62 (63)
84 1x79_B RAB GTPase binding effe 37.5 2.5E+02 0.0086 25.9 12.0 24 389-413 2-25 (112)
85 3cve_A Homer protein homolog 1 37.4 63 0.0022 27.9 5.9 22 388-409 9-30 (72)
86 3cvf_A Homer-3, homer protein 37.3 62 0.0021 28.3 5.9 21 388-408 15-35 (79)
87 2i1j_A Moesin; FERM, coiled-co 36.8 56 0.0019 36.5 7.0 27 566-592 434-460 (575)
88 1jnm_A Proto-oncogene C-JUN; B 36.1 29 0.001 28.1 3.5 36 375-410 25-60 (62)
89 2i1j_A Moesin; FERM, coiled-co 35.4 50 0.0017 36.9 6.3 36 373-408 329-364 (575)
90 2fxo_A Myosin heavy chain, car 34.4 2.7E+02 0.0091 25.3 14.6 24 434-457 71-94 (129)
91 1i4d_A Arfaptin 2, partner of 34.0 3.8E+02 0.013 27.1 17.0 181 284-508 7-195 (224)
92 3tul_A Cell invasion protein S 33.7 2.8E+02 0.0095 27.1 10.2 103 474-586 23-128 (158)
93 1wt6_A Myotonin-protein kinase 32.5 78 0.0027 28.0 5.7 47 222-268 15-64 (81)
94 1jnm_A Proto-oncogene C-JUN; B 31.6 61 0.0021 26.2 4.7 35 311-345 23-57 (62)
95 1l8d_A DNA double-strand break 30.9 1.5E+02 0.0052 25.6 7.4 32 313-344 13-44 (112)
96 3i00_A HIP-I, huntingtin-inter 30.8 2.8E+02 0.0095 25.6 9.4 19 425-443 15-33 (120)
97 1ci6_A Transcription factor AT 30.0 63 0.0021 26.5 4.5 33 312-344 25-57 (63)
98 3ol1_A Vimentin; structural ge 29.8 3.1E+02 0.011 24.7 14.4 35 375-409 16-50 (119)
99 3mq9_A Bone marrow stromal ant 29.8 5E+02 0.017 27.1 14.0 48 430-484 416-463 (471)
100 1l8d_A DNA double-strand break 29.5 2.7E+02 0.0093 23.9 12.2 37 376-412 7-43 (112)
101 3mq7_A Bone marrow stromal ant 29.2 3.7E+02 0.013 25.3 13.1 54 434-494 48-101 (121)
102 2e7s_A RAB guanine nucleotide 29.2 2.1E+02 0.0073 27.2 8.5 51 540-590 70-121 (135)
103 3v6i_A V-type ATP synthase sub 28.4 3.7E+02 0.013 25.2 14.8 46 565-613 67-112 (187)
104 2wt7_A Proto-oncogene protein 28.3 1.3E+02 0.0045 24.4 6.1 36 375-410 26-61 (63)
105 3iv1_A Tumor susceptibility ge 28.3 2.4E+02 0.0082 24.7 8.0 30 497-526 16-45 (78)
106 3m91_A Proteasome-associated A 27.9 1.3E+02 0.0043 24.4 5.8 33 514-546 14-46 (51)
107 2wt7_A Proto-oncogene protein 27.3 83 0.0028 25.6 4.8 33 312-344 25-57 (63)
108 3a7o_A Autophagy protein 16; c 27.2 88 0.003 27.3 5.0 52 282-338 23-74 (75)
109 3u59_A Tropomyosin beta chain; 27.1 3.2E+02 0.011 23.9 11.1 19 515-533 43-61 (101)
110 1t2k_D Cyclic-AMP-dependent tr 27.0 78 0.0027 25.5 4.5 33 312-344 24-56 (61)
111 1ez3_A Syntaxin-1A; three heli 26.4 3.2E+02 0.011 23.7 10.8 17 574-590 97-113 (127)
112 3okq_A BUD site selection prot 26.2 4.4E+02 0.015 25.3 10.1 21 388-408 56-76 (141)
113 3q8t_A Beclin-1; autophagy, AT 26.1 3.4E+02 0.012 23.9 12.2 19 388-406 27-45 (96)
114 2w83_C C-JUN-amino-terminal ki 26.1 3.4E+02 0.012 23.9 8.6 27 312-338 4-30 (77)
115 2wt7_B Transcription factor MA 25.9 1.1E+02 0.0036 27.4 5.5 37 373-409 49-85 (90)
116 4dk0_A Putative MACA; alpha-ha 25.7 1.9E+02 0.0065 28.9 8.1 79 375-454 73-151 (369)
117 1hjb_A Ccaat/enhancer binding 25.6 1.3E+02 0.0044 26.6 6.0 40 374-413 38-77 (87)
118 3iox_A AGI/II, PA; alpha helix 25.0 6.3E+02 0.022 28.5 12.6 9 500-508 67-75 (497)
119 2jee_A YIIU; FTSZ, septum, coi 25.0 69 0.0024 28.2 4.1 62 244-305 8-69 (81)
120 1m1j_B Fibrinogen beta chain; 24.9 5.9E+02 0.02 28.3 12.3 30 310-339 168-197 (464)
121 2yy0_A C-MYC-binding protein; 24.4 1.3E+02 0.0044 24.3 5.3 34 372-409 16-49 (53)
122 3r2p_A Apolipoprotein A-I; amp 24.2 4.6E+02 0.016 24.8 11.3 120 375-534 52-173 (185)
123 1gu4_A CAAT/enhancer binding p 23.4 92 0.0032 26.9 4.5 34 313-346 39-72 (78)
124 3iox_A AGI/II, PA; alpha helix 23.3 8.5E+02 0.029 27.5 13.3 56 480-537 32-87 (497)
125 2f1m_A Acriflavine resistance 23.1 2.9E+02 0.0099 26.6 8.6 34 374-407 55-88 (277)
126 1hjb_A Ccaat/enhancer binding 22.2 91 0.0031 27.5 4.4 33 314-346 40-72 (87)
127 3he5_A Synzip1; heterodimeric 21.7 71 0.0024 25.5 3.1 24 309-332 2-25 (49)
128 1m1j_B Fibrinogen beta chain; 21.5 7.3E+02 0.025 27.6 12.2 20 324-343 93-112 (464)
129 2wuj_A Septum site-determining 20.9 33 0.0011 27.7 1.2 39 302-340 19-57 (57)
130 1nkp_B MAX protein, MYC proto- 20.8 1.2E+02 0.004 25.5 4.6 35 310-344 47-81 (83)
131 1fxk_C Protein (prefoldin); ar 20.6 4.5E+02 0.015 23.3 11.4 31 559-589 96-126 (133)
132 3m91_A Proteasome-associated A 20.4 2.4E+02 0.0081 22.9 6.1 37 429-476 13-49 (51)
133 1gmj_A ATPase inhibitor; coile 20.2 2.5E+02 0.0086 24.9 6.7 43 395-444 35-77 (84)
134 2jd3_A STBB protein; plasmid s 20.2 63 0.0021 30.7 3.1 45 598-643 52-98 (130)
135 3u1c_A Tropomyosin alpha-1 cha 20.2 4.5E+02 0.015 23.1 13.8 71 311-408 3-73 (101)
136 3fpp_A Macrolide-specific effl 20.1 3.4E+02 0.011 26.9 8.5 27 376-402 66-92 (341)
137 3nmd_A CGMP dependent protein 20.1 1.3E+02 0.0043 26.1 4.6 47 279-344 21-67 (72)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.64 E-value=0.00027 Score=64.97 Aligned_cols=37 Identities=5% Similarity=0.117 Sum_probs=19.2
Q ss_pred hHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhh
Q 003961 554 SHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNR 590 (783)
Q Consensus 554 s~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ 590 (783)
......+..+...+..+......++..++....+|..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 283 (284)
T 1c1g_A 247 TKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTS 283 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444444445555555555555566555555544
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.45 E-value=1.8e-07 Score=109.90 Aligned_cols=25 Identities=12% Similarity=0.272 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHhHH
Q 003961 228 SQTRQLRMELEQQRNKFADVQLKLQ 252 (783)
Q Consensus 228 ~~i~~l~~el~~~~~k~~~~~~~lq 252 (783)
.++++|+.+|++-+.++..++..+.
T Consensus 857 ~El~~L~~eL~el~~~L~~le~~l~ 881 (1184)
T 1i84_S 857 EEMQAKDEELQRTKERQQKAEAELK 881 (1184)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.41 E-value=0.0012 Score=60.67 Aligned_cols=20 Identities=15% Similarity=0.031 Sum_probs=8.2
Q ss_pred HHHhhhhhhhhhHHhHHHHH
Q 003961 559 MLAEGKGRANKLEEDNAKLR 578 (783)
Q Consensus 559 ~l~e~K~~~~KL~eDn~kLR 578 (783)
.+..+...+.++......+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~ 278 (284)
T 1c1g_A 259 ELYAQKLKYKAISEELDHAL 278 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444433
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.33 E-value=3.1e-07 Score=107.94 Aligned_cols=32 Identities=6% Similarity=0.186 Sum_probs=14.3
Q ss_pred HHHhhhhhhhHHHhHHHHHhhchHHHHHHhhc
Q 003961 237 LEQQRNKFADVQLKLQEEQRLNESFQDELKSL 268 (783)
Q Consensus 237 l~~~~~k~~~~~~~lqee~k~n~~fqe~l~~l 268 (783)
+..-.+++..++.+|....+.-..+.+++..|
T Consensus 859 l~~L~~eL~el~~~L~~le~~l~ele~~l~~L 890 (1184)
T 1i84_S 859 MQAKDEELQRTKERQQKAEAELKELEQKHTQL 890 (1184)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555555544444434444444444
No 5
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.35 E-value=0.031 Score=72.76 Aligned_cols=203 Identities=14% Similarity=0.152 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 003961 376 EMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQ 455 (783)
Q Consensus 376 eme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~q 455 (783)
-++..|++ |.++....+++.+||..++.-|-.+..+.++.|+. |..-.++.+..+..+...|..+.+..
T Consensus 1921 rl~~GL~K----L~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~----i~~~~~~ae~~k~~v~~~~~~~~~~~--- 1989 (3245)
T 3vkg_A 1921 HLNIGLKK----LRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQ----MVQDQQAAEIKQKDARELQVQLDVRN--- 1989 (3245)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 34444554 77888889999999999999988887766655554 22222345555555555444443321
Q ss_pred HHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 003961 456 EEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNA 535 (783)
Q Consensus 456 eelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a 535 (783)
.++...+++ -..+|+..+=+ .=|..++..++..| +++ +.+|+.++.+++.|.+.|...
T Consensus 1990 --------~ei~~~k~~---~e~dL~~A~Pa-~Pkr~~l~~ae~~l-------~~~---~~~L~~~~~~L~~le~~l~~L 2047 (3245)
T 3vkg_A 1990 --------KEIAVQKVK---AYADLEKAEPT-GPLREEVEQLENAA-------NEL---KLKQDEIVATITALEKSIATY 2047 (3245)
T ss_dssp --------HHHHHHHHH---HHHCC--------CHHHHHHHHHHHH-------HHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHH---HHHHHhhcCCC-ChHHHHHHHHHHHH-------HHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 122222221 22233333322 23333444444333 333 455566666777777777777
Q ss_pred hhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHhcC
Q 003961 536 DQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRMSVDSDFLVDRRIVIKLLVTYFQRN 615 (783)
Q Consensus 536 ~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ms~dsD~~VDRRIVtkLLLTYf~R~ 615 (783)
+...+.+..||+.+...+...+..+.-+...+..|..+...-.+.+.+--.++.. +|=.-|++--||+|+---
T Consensus 2048 ~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~-------L~GD~LLaaafisY~G~f 2120 (3245)
T 3vkg_A 2048 KEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMST-------VVGDVVLASAFLAYIGFF 2120 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHTGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHcCCC
Confidence 7777777778877777777777777777777777887777766665544443333 444457788888898644
Q ss_pred Cch
Q 003961 616 HSK 618 (783)
Q Consensus 616 ~sK 618 (783)
...
T Consensus 2121 ~~~ 2123 (3245)
T 3vkg_A 2121 DQN 2123 (3245)
T ss_dssp CHH
T ss_pred CHH
Confidence 333
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.05 E-value=0.13 Score=51.40 Aligned_cols=46 Identities=17% Similarity=0.089 Sum_probs=28.3
Q ss_pred HHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHH
Q 003961 464 SEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIE 509 (783)
Q Consensus 464 ~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~E 509 (783)
.||..++..|..|..++.+.|+.++.+..++..++..|....++.+
T Consensus 97 kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~ 142 (256)
T 3na7_A 97 IEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLAL 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666677776666666665555555555443
No 7
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.50 E-value=0.034 Score=65.97 Aligned_cols=91 Identities=23% Similarity=0.303 Sum_probs=35.5
Q ss_pred hhhhhhHHHhHHHHHhhchHHHHHHhhcccCcccchhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHH
Q 003961 241 RNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVA 320 (783)
Q Consensus 241 ~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~ 320 (783)
-+|+.+++.+|+++.+.|..++++++.+. .+...++.+|++++.+.... +.++. .....+.+|...++
T Consensus 927 E~kl~eLq~rL~~~e~~n~~L~~~~~~~~---~~~~~e~~~L~~~l~~le~~----~~e~~-----~~~~~v~~L~~e~~ 994 (1080)
T 2dfs_A 927 ENKIMQLQRKIDEQNKEYKSLLEKMNNLE---ITYSTETEKLRSDVERLRMS----EEEAK-----NATNRVLSLQEEIA 994 (1080)
T ss_dssp ------------------------CHHHH---HHHHHHHHHHHHTHHHHHHH----HHHHH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHH----HHHHH-----HHHHHHHHHHHHHH
Confidence 35677888999999999999999887776 55567777776665544332 22221 11134555555566
Q ss_pred HHHHhhhhhHhhHHHHHHHHHHh
Q 003961 321 TLEKENNSLKMEKTELVAALEKN 343 (783)
Q Consensus 321 ~L~kEn~tlk~~~~eL~a~L~~~ 343 (783)
.|+++...+..++..|+.++..+
T Consensus 995 ~l~~~~~~~~ke~~~lee~~~~~ 1017 (1080)
T 2dfs_A 995 KLRKELHQTQTEKKTIEEWADKY 1017 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555554444333
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.13 E-value=1.3 Score=58.37 Aligned_cols=220 Identities=15% Similarity=0.189 Sum_probs=123.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCC
Q 003961 278 EITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASE 357 (783)
Q Consensus 278 ~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e 357 (783)
-|-.+|.-..+.- .+...++-|.---++..-++-++.-..-+.+....+..+++.|..-|+.+..+
T Consensus 1867 ~~~~iH~sv~~~s---~~~~~~~~R~~yvTP~syLeli~~y~~ll~~K~~el~~~~~rl~~GL~KL~et----------- 1932 (3245)
T 3vkg_A 1867 SLVYIHQTIGEAN---IRLLKRQGRQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDT----------- 1932 (3245)
T ss_dssp HHHHHHHHHHHHH---HHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHH---HHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 3445554433321 23444554544445555566666655566666667777788888888877733
Q ss_pred CCCcCCCCCCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHH
Q 003961 358 YPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQ 437 (783)
Q Consensus 358 ~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~ 437 (783)
.. +-++|...|..++.+|++...|.+++.+++..=++- +++...+.++..+.++.+
T Consensus 1933 --------~~-----~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~-----------ae~~k~~v~~~~~~~~~~ 1988 (3245)
T 3vkg_A 1933 --------EA-----QVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQA-----------AEIKQKDARELQVQLDVR 1988 (3245)
T ss_dssp --------HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
T ss_pred --------HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
Confidence 11 345677777777777777777777766666543221 112112222222233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHH
Q 003961 438 RAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERE 517 (783)
Q Consensus 438 R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~E 517 (783)
...|......+... |..+... .=.++.+..+..+|...++.+.++..+|..|+.-|.+++++-+++ .+|
T Consensus 1989 ~~ei~~~k~~~e~d------L~~A~Pa--~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~---~~e 2057 (3245)
T 3vkg_A 1989 NKEIAVQKVKAYAD------LEKAEPT--GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATL---IRE 2057 (3245)
T ss_dssp HHHHHHHHHHHHHC------C---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHH------HhhcCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 33333322222211 1111111 344566677777788888888888888888888888888887664 455
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHhhhhH
Q 003961 518 LALAREESAKLSEYLKNADQRAEVSRSEK 546 (783)
Q Consensus 518 La~aree~a~Ls~~Lk~a~q~ie~~~kEK 546 (783)
...++.++......|..|..=|..+..||
T Consensus 2058 k~~L~~e~~~~~~kl~rA~~Li~gL~~Ek 2086 (3245)
T 3vkg_A 2058 TEQIKTESSKVKNKVDRSIALLDNLNSER 2086 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 55555666666666666665555555554
No 9
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.74 E-value=1.9 Score=43.06 Aligned_cols=16 Identities=19% Similarity=0.428 Sum_probs=7.8
Q ss_pred HHHhhHHHHHhhhhhH
Q 003961 465 EIQKSKEIIDGLNNKL 480 (783)
Q Consensus 465 E~~~ske~iedL~~~L 480 (783)
++...+..|.+.+++|
T Consensus 68 ~i~~~~~ri~~~~~~l 83 (256)
T 3na7_A 68 TLQDTNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444445555555544
No 10
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.10 E-value=1.8 Score=42.87 Aligned_cols=129 Identities=16% Similarity=0.251 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhh---hhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003961 376 EMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEE---SEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTL 452 (783)
Q Consensus 376 eme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee---~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~ 452 (783)
+||..|..+++.+.++.....++..|+..+|-.+-....+. ...+.. .|..|+..++.++..|-.||.+
T Consensus 46 ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~---el~~l~~~~~~l~~~ireLEq~----- 117 (189)
T 2v71_A 46 ELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLED---DLSQTRAIKEQLHKYVRELEQA----- 117 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-----
Confidence 55556666666666666666666667666666654443322 122222 2445555555555555444441
Q ss_pred HHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 003961 453 AKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYL 532 (783)
Q Consensus 453 a~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~L 532 (783)
++++ +......-.-++|+..+|...|+..-- | ..|.+-++.|..++.+++.++.-|-+.|
T Consensus 118 --NDdl----Er~~R~~~~SleD~e~kln~aiEr~al-------L-------E~El~EKe~l~~~~QRLkdE~rDLk~El 177 (189)
T 2v71_A 118 --NDDL----ERAKRATIMSLEDFEQRLNQAIERNAF-------L-------ESELDEKESLLVSVQRLKDEARDLRQEL 177 (189)
T ss_dssp --HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-------HHHHHHHHHHHCCC--------------
T ss_pred --hhHH----HHHHHHHHhhHHHHHHHHHHHHHHHHH-------H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 011122233445555555554442222 1 2344446666666666666666555443
No 11
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=94.48 E-value=0.088 Score=47.74 Aligned_cols=85 Identities=20% Similarity=0.194 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHH
Q 003961 310 DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLK 389 (783)
Q Consensus 310 ~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~ 389 (783)
..+..|+..|+.|+.||+.|...+..|+..|+..- +-....|+.+ .+-..+.-|..+- ..
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~--l~Gd~~~~~T-------KVlH~~~NPa~~a-----------~~ 71 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRA--LQGDYDQSRT-------KVLHMSLNPTSVA-----------RQ 71 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS--CCSCCCTTTE-------EEEEESSCHHHHH-----------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccccCCccC-------eeeeecCChHHHH-----------HH
Confidence 58999999999999999999999999999998753 3222333211 2233332333333 22
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhh
Q 003961 390 ETCSERDKALQELTRLKQHLIEKAQ 414 (783)
Q Consensus 390 e~~~E~dKa~kEL~RLRqHLLe~E~ 414 (783)
....+.++++.|+.|||.++-.+++
T Consensus 72 ~~~~~~e~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 72 RLREDHSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3346688999999999999877764
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.45 E-value=0.27 Score=52.63 Aligned_cols=22 Identities=9% Similarity=0.028 Sum_probs=8.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHH
Q 003961 387 DLKETCSERDKALQELTRLKQH 408 (783)
Q Consensus 387 eL~e~~~E~dKa~kEL~RLRqH 408 (783)
+++...........++.++++.
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~ 531 (597)
T 3oja_B 510 VFTHLKERQAFKLRETQARRTE 531 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhHHHHHHHHHh
Confidence 3333333344444444444443
No 13
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.32 E-value=0.98 Score=53.88 Aligned_cols=61 Identities=13% Similarity=0.259 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHH
Q 003961 378 EQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLE 445 (783)
Q Consensus 378 e~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lE 445 (783)
+..+..|+.++.++..+..++.+|...|.+..-...+ .+. ..+..|..++..+|.++.+|+
T Consensus 983 ~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~----~L~---~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 983 TNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH----ETE---QLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666666665444322221 111 234445555555555555555
No 14
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=93.56 E-value=0.31 Score=42.96 Aligned_cols=48 Identities=29% Similarity=0.440 Sum_probs=39.3
Q ss_pred hhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 003961 491 NVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEV 541 (783)
Q Consensus 491 nvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~ 541 (783)
++++.|||+||+ +||-|+.-+..||..++..+..+...|++|+.+...
T Consensus 9 ~~~~leLQSALe---aEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~e 56 (81)
T 1wt6_A 9 EVTLRELQEALE---EEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRD 56 (81)
T ss_dssp CCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999985 899999999999999999988877777766655443
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.72 E-value=1.8 Score=46.30 Aligned_cols=79 Identities=19% Similarity=0.221 Sum_probs=56.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhh
Q 003961 512 GHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNR 590 (783)
Q Consensus 512 ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ 590 (783)
+.++.+...++++.+.+...+...++.++...++.+.+-.+....++.+.+.+..+..+++++..+++-+.+-+..+++
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4566666677777777777777777777665556555556666777778888888888888888888888777776655
No 16
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=92.05 E-value=10 Score=37.60 Aligned_cols=77 Identities=21% Similarity=0.299 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhhcc
Q 003961 515 ERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRMS 592 (783)
Q Consensus 515 e~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ms 592 (783)
..++..+++....|...|..-.+.-+..-+..-.....|..++..++.+=++.+=|+.|+.- +..|...++||++-.
T Consensus 94 q~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~E-Ke~l~~~~QRLkdE~ 170 (189)
T 2v71_A 94 EDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE-KESLLVSVQRLKDEA 170 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 33344444444444444433333333322222223344555666666655555556666654 667777777776643
No 17
>1upt_B Golgi autoantigen, golgin subfamily A member 4; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: a.193.1.1 PDB: 1r4a_E*
Probab=90.15 E-value=0.35 Score=40.61 Aligned_cols=39 Identities=23% Similarity=0.508 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhcCCCHHHHHHhhhcc
Q 003961 603 IVIKLLVTYFQRNHSKEVLDLMVRMLGFSDEDKQRIGMAQ 642 (783)
Q Consensus 603 IVtkLLLTYf~R~~sKEVL~LMArMLgFSDEEK~riGL~~ 642 (783)
-+.|+|+.|+.....+.|+..++.+|-||++|.++| +.+
T Consensus 9 YLrNVl~~ym~g~~~~~m~kaI~avL~Fs~~e~q~i-l~~ 47 (60)
T 1upt_B 9 YLRKVLFEYMMGRETKTMAKVITTVLKFPDDQTQKI-LER 47 (60)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHTTCCHHHHHHH-HHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhCCHHHHHHH-HHH
Confidence 367999999998888899999999999999999999 444
No 18
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=87.07 E-value=4.8 Score=37.77 Aligned_cols=65 Identities=25% Similarity=0.274 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003961 381 LQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLK 449 (783)
Q Consensus 381 lq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK 449 (783)
+-.++.+...+..+.+...+|+..||+.|+... .+.++-.+.+++|++++..+..++..||..|.
T Consensus 70 l~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~----~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 70 YFKAKKMADSLSLDIENKDKEIYDLKHELIAAQ----IKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566666777777788999999999988774 46666667778888887777777777776655
No 19
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=84.55 E-value=7.7 Score=35.91 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=20.8
Q ss_pred HHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHH
Q 003961 472 IIDGLNNKLANCMRTIEAKNVELLNLQTALGQ 503 (783)
Q Consensus 472 ~iedL~~~L~~~mealeAKnvEl~NLQtALgq 503 (783)
+|++|+.+|..|-++|..|..+|.+|..=+.+
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q 56 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQ 56 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777766666666654443
No 20
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=80.39 E-value=6.8 Score=44.20 Aligned_cols=83 Identities=7% Similarity=0.154 Sum_probs=39.7
Q ss_pred hHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhh-HHHHHHHhhhhhhhhh-
Q 003961 493 ELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLS-HSEKMLAEGKGRANKL- 570 (783)
Q Consensus 493 El~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs-~~E~~l~e~K~~~~KL- 570 (783)
...++.++..||-.|. ++.+..+++++...-+.|++-+..|+..+.+ +.||. .+..++..-|.-|.+.
T Consensus 100 q~~dNdNtynE~S~EL------RRrIqyLKekVdnQlsnIrvLQsnLedq~~k----IQRLEvDIdiqirsCKgsCsr~~ 169 (562)
T 3ghg_A 100 SANNRDNTYNRVSEDL------RSRIEVLKRKVIEKVQHIQLLQKNVRAQLVD----MKRLEVDIDIKIRSCRGSCSRAL 169 (562)
T ss_dssp HHHHHHHHHHHTTHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHGGGTBSCCC
T ss_pred hhhccchhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhccccccchh
Confidence 3345555666666555 6666666666554334444444444433322 23332 3333344444444442
Q ss_pred -----HHhHHHHHHHHHHHH
Q 003961 571 -----EEDNAKLRLAVEQSM 585 (783)
Q Consensus 571 -----~eDn~kLR~ALeqsl 585 (783)
.++-+-+-+-|+|.+
T Consensus 170 ~~~vd~~sY~~~QKQLeQv~ 189 (562)
T 3ghg_A 170 AREVDLKDYEDQQKQLEQVI 189 (562)
T ss_dssp CCCCCHHHHHHHHHHHHHHH
T ss_pred eeecchHHHHHHHHHHHHHh
Confidence 144555555565554
No 21
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=79.41 E-value=23 Score=34.35 Aligned_cols=56 Identities=14% Similarity=0.019 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003961 392 CSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQT 451 (783)
Q Consensus 392 ~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~ 451 (783)
+..+..+..|+..|+..+.+.++ .+.+-.+.++.|+.+......+...+|..+..-
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLee----el~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kL 122 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKE----VIALKNKNTERLNAALISGTIENNVLQQKLSDL 122 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677788888888888877764 344446778888888888889999988888765
No 22
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=78.79 E-value=4.2 Score=45.86 Aligned_cols=102 Identities=18% Similarity=0.208 Sum_probs=59.0
Q ss_pred HHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHHHhHHHHHH
Q 003961 318 VVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKETCSERDK 397 (783)
Q Consensus 318 ~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e~~~E~dK 397 (783)
|--.|-|++.+|+..+++|...|+.+.++.. +++. -+...++.|+..+.... +.+-
T Consensus 51 LQglLdkqErDltkrINELKnqLEdlsKnsK---------------dseq--------y~k~~~E~Lr~rq~q~~-dNdN 106 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKNSLFEYQKNNK---------------DSHS--------LTTNIMEILRGDFSSAN-NRDN 106 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH---------------HHHH--------HHHHHHHTTSSHHHHHH-HHHH
T ss_pred hhhhHHhhcCcHHHHHHHHHHHHHHHHhhch---------------hHHH--------HHHHHHHHHHHHHHhhh-ccch
Confidence 3345556677777777777777776653310 1111 12333445555555555 5555
Q ss_pred HHHHHH-HHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHH
Q 003961 398 ALQELT-RLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENV 447 (783)
Q Consensus 398 a~kEL~-RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEra 447 (783)
...|+. -||+|+..++. +.++.-..|.-|+..++.|+.+|..||.+
T Consensus 107 tynE~S~ELRRrIqyLKe----kVdnQlsnIrvLQsnLedq~~kIQRLEvD 153 (562)
T 3ghg_A 107 TYNRVSEDLRSRIEVLKR----KVIEKVQHIQLLQKNVRAQLVDMKRLEVD 153 (562)
T ss_dssp HHHHTTHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777 88888777753 45555555666666666666555555543
No 23
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=77.32 E-value=54 Score=31.69 Aligned_cols=46 Identities=22% Similarity=0.302 Sum_probs=23.8
Q ss_pred hhhHHHHHHhh-hHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHH
Q 003961 543 RSEKEEILVKL-SHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRL 588 (783)
Q Consensus 543 ~kEKeei~~KL-s~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL 588 (783)
.+|.+++.+.| ..+-.+-++.+....+++.-+.+|++.|...-.+|
T Consensus 85 e~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l 131 (154)
T 2ocy_A 85 NKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLL 131 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443 44555555555555555555555555555444433
No 24
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=75.87 E-value=54 Score=34.56 Aligned_cols=29 Identities=17% Similarity=0.025 Sum_probs=18.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003961 425 KIIEELRENNEYQRAQILHLENVLKQTLA 453 (783)
Q Consensus 425 k~IeELreenE~~R~~Is~lEraLK~~~a 453 (783)
..|+.+++++++++..+.+++.++..+.+
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
T 3oja_A 442 HKETQLAEENARLKKLNGEADLALASANA 470 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhhhhhhhhhhhhhhHhccc
Confidence 34566777777777777776666665543
No 25
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=75.22 E-value=33 Score=31.12 Aligned_cols=42 Identities=19% Similarity=0.266 Sum_probs=25.6
Q ss_pred hchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHH
Q 003961 461 MNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIE 509 (783)
Q Consensus 461 ~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~E 509 (783)
+...+|..++.+|+.+..+= ..-..++.|+|.+++.|..--|
T Consensus 17 ~ye~~I~~LR~qid~~~~e~-------a~l~leldn~~~~~edfk~KyE 58 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQLTNDK-------ARVEVERDNLAEDIMRLREKLQ 58 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhH
Confidence 44456666666666553221 1114578999999999976543
No 26
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=74.74 E-value=36 Score=35.83 Aligned_cols=30 Identities=17% Similarity=0.147 Sum_probs=15.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 003961 384 LEKDLKETCSERDKALQELTRLKQHLIEKA 413 (783)
Q Consensus 384 L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E 413 (783)
++.+.++.....++..++..-+++.+....
T Consensus 365 l~~~~~~le~~~~~~~~~~~~~~~~~~~~~ 394 (487)
T 3oja_A 365 LEQKKKALDEQVSNGRRAHAELDGTLQQAV 394 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHhh
Confidence 333444444445555555555555554443
No 27
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=74.25 E-value=63 Score=32.33 Aligned_cols=72 Identities=18% Similarity=0.199 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhhcc
Q 003961 513 HLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRMS 592 (783)
Q Consensus 513 rLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ms 592 (783)
.+..++..+..-+=.|+..|.-.+........|+..+..|......++ +|+-.|++
T Consensus 70 ~FigDLekVv~LLLsLs~RLaRvenaL~~~~~Er~sL~~K~~~L~~Q~-----------EDAkeLKe------------- 125 (190)
T 3thf_A 70 THVDAVGNITSLLLSLSERLAQTESSLETRQQERGALESKRDLLYEQM-----------EEAQRLKS------------- 125 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHccChhHHHHHHHHHHHHHHHH-----------HHHHHHHH-------------
Confidence 444555555555555666666655555444455555555543333333 44555555
Q ss_pred CCcchhhhHH--HHHHHHHHHHh
Q 003961 593 VDSDFLVDRR--IVIKLLVTYFQ 613 (783)
Q Consensus 593 ~dsD~~VDRR--IVtkLLLTYf~ 613 (783)
+|||| +|+.+|-.|++
T Consensus 126 -----~ldRRe~~V~~iL~~~L~ 143 (190)
T 3thf_A 126 -----DIERRGVSIAGLLAKNLS 143 (190)
T ss_dssp -----HHHHHHHHHHHHHHHHSC
T ss_pred -----HHHHHHHHHHHHHHHhCC
Confidence 45664 78888888887
No 28
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=73.84 E-value=8.2 Score=36.72 Aligned_cols=87 Identities=21% Similarity=0.195 Sum_probs=36.7
Q ss_pred hhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhh
Q 003961 489 AKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYL-KNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRA 567 (783)
Q Consensus 489 AKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~L-k~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~ 567 (783)
-.+.++.-|+..|.. |.....-.+.+...+..++..||++| .+|+.-+..++++...+-.|..+.+..+.+....+
T Consensus 43 ~~~~e~~~L~~~l~e---E~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll 119 (135)
T 2e7s_A 43 DRDDEVKRLREDIAK---ENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLL 119 (135)
T ss_dssp THHHHHHTHHHHHHH---TTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC
T ss_pred hhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555544433 22222333455555556666666443 34444444444444444445555555555544444
Q ss_pred hhhHHhHHHHH
Q 003961 568 NKLEEDNAKLR 578 (783)
Q Consensus 568 ~KL~eDn~kLR 578 (783)
..+.....-|+
T Consensus 120 ~~lq~QL~~LK 130 (135)
T 2e7s_A 120 DTLTLQLKNLK 130 (135)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 29
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=71.98 E-value=31 Score=37.68 Aligned_cols=73 Identities=10% Similarity=0.105 Sum_probs=42.4
Q ss_pred HHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHHHhHHHHHH
Q 003961 318 VVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKETCSERDK 397 (783)
Q Consensus 318 ~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e~~~E~dK 397 (783)
+-..|-+.+.+++..+.+|...|..+..+..+ +. .-+-..++.|+..++....--+.
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~---------------~~--------~y~~~~~~~lk~~~~q~~dndn~ 110 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFNYQKNSKD---------------SN--------TLTKNIVELMRGDFAKANNNDNT 110 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhH---------------HH--------HHHHHHHHHHHHHHHhhccchHH
Confidence 34455566688999999999999888844111 11 12222344455555555444455
Q ss_pred HHHHHHHHHHHHHHHh
Q 003961 398 ALQELTRLKQHLIEKA 413 (783)
Q Consensus 398 a~kEL~RLRqHLLe~E 413 (783)
..+-..-||+|.+...
T Consensus 111 ~~e~s~eLe~~i~~lk 126 (390)
T 1deq_A 111 FKQINEDLRSRIEILR 126 (390)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555666777766553
No 30
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=70.99 E-value=18 Score=37.72 Aligned_cols=96 Identities=18% Similarity=0.212 Sum_probs=50.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 003961 383 KLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMN 462 (783)
Q Consensus 383 ~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n 462 (783)
.|..+...+ +.+..+++.-+|+.|--.-.+=..++..+ +++||+.+ .-+=..|+
T Consensus 100 ~l~~~~~~L---r~~L~~dlEelR~~L~Py~~el~~~l~~~---~eelr~kL-------~Py~~EL~------------- 153 (307)
T 2l7b_A 100 RLSKELQAA---QARLGADMEDVCGRLVQYRGEVQAMLGQS---TEELRVRL-------ASHLRKLR------------- 153 (307)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHSSCC---SHHHHHHH-------HHHHHHHH-------------
T ss_pred HHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH-------HHHHHHHH-------------
Confidence 333444444 55666777777777544433334444443 44555433 22222333
Q ss_pred hHHHHhhHHHHHhhhhhHHHhHHHHHhh-hhhHhhHHHHHHHHHHHH
Q 003961 463 HSEIQKSKEIIDGLNNKLANCMRTIEAK-NVELLNLQTALGQYFAEI 508 (783)
Q Consensus 463 ~~E~~~ske~iedL~~~L~~~mealeAK-nvEl~NLQtALgqfqAE~ 508 (783)
...+..+++|+.+|.-..+.+..+ ..-+.+|+..|+=|..+.
T Consensus 154 ----~~~~~~~eeLr~~L~py~eeLr~kl~~~veelr~~L~Py~e~~ 196 (307)
T 2l7b_A 154 ----KRLLRDADDLQKRLAVYQAGAREGAERGLSAIRERLGPLVEQG 196 (307)
T ss_dssp ----HHHHHHHHHHHHHHHHHTSCCSSHHHHHHHHHHHHCSSSCTTT
T ss_pred ----HHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 223345566666776666655554 445567777776654443
No 31
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=70.89 E-value=62 Score=29.40 Aligned_cols=28 Identities=36% Similarity=0.292 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 003961 513 HLERELALAREESAKLSEYLKNADQRAE 540 (783)
Q Consensus 513 rLe~ELa~aree~a~Ls~~Lk~a~q~ie 540 (783)
+.+.++..++..+..|.+.|..+++.++
T Consensus 72 ~~~~~l~~~q~~i~~lE~eL~~~r~e~~ 99 (129)
T 3tnu_B 72 RGELALKDARNKLAELEEALQKAKQDMA 99 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3444445555555555555444444433
No 32
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=70.49 E-value=17 Score=35.58 Aligned_cols=58 Identities=28% Similarity=0.310 Sum_probs=33.2
Q ss_pred hhchhHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccC
Q 003961 214 EKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMD 271 (783)
Q Consensus 214 ~~~~~~aa~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~ 271 (783)
++...+-+....++.++-.|..+|++||.-..-..-...|=+-++.++++||..++-.
T Consensus 55 ~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~ 112 (168)
T 3o0z_A 55 ERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHN 112 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666777777777766544444433344444566666666655433
No 33
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=70.42 E-value=1e+02 Score=31.60 Aligned_cols=21 Identities=10% Similarity=0.167 Sum_probs=10.8
Q ss_pred hHHhHHHHHHHHHHHHHHHhh
Q 003961 570 LEEDNAKLRLAVEQSMTRLNR 590 (783)
Q Consensus 570 L~eDn~kLR~ALeqsl~RL~~ 590 (783)
|...++.||.-|+-....++.
T Consensus 174 l~~~~eeLr~~L~p~ae~lr~ 194 (273)
T 3s84_A 174 ISASAEELRQRLAPLAEDVRG 194 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555543
No 34
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=70.28 E-value=81 Score=30.50 Aligned_cols=87 Identities=21% Similarity=0.187 Sum_probs=52.0
Q ss_pred hhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhh
Q 003961 490 KNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYL-KNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRAN 568 (783)
Q Consensus 490 KnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~L-k~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~ 568 (783)
.+.++.=|+..| .-|.....-.+.+...+..++..|+++| .+|+--+..++++...+-.|..+.+..+.|....+.
T Consensus 56 ~~~e~~~L~~~l---~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~ 132 (154)
T 2ocy_A 56 RDDEVKRLREDI---AKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLD 132 (154)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555454444 4444444455667777777888888554 456665555566655555677777777777666655
Q ss_pred hhHHhHHHHHH
Q 003961 569 KLEEDNAKLRL 579 (783)
Q Consensus 569 KL~eDn~kLR~ 579 (783)
-+.....-|+.
T Consensus 133 ~lq~ql~~LK~ 143 (154)
T 2ocy_A 133 TLTLQLKNLKK 143 (154)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 35
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=69.87 E-value=36 Score=31.46 Aligned_cols=66 Identities=26% Similarity=0.361 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHH
Q 003961 310 DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLK 389 (783)
Q Consensus 310 ~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~ 389 (783)
..+++|++.|+.|+.+...++++....- .+|...+..|+.+|.
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q~~v-------------------------------------~ql~~~i~~Le~eL~ 57 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQRVV-------------------------------------LQLKGHVSELEADLA 57 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHHHHHHHHHH
Confidence 3788888888888888888876654332 245555778889999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Q 003961 390 ETCSERDKALQELTRLKQHLIEK 412 (783)
Q Consensus 390 e~~~E~dKa~kEL~RLRqHLLe~ 412 (783)
++++.++++.-|..+||.-+-+.
T Consensus 58 e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 58 EQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999665544
No 36
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=69.87 E-value=58 Score=29.73 Aligned_cols=28 Identities=21% Similarity=0.134 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 003961 513 HLERELALAREESAKLSEYLKNADQRAE 540 (783)
Q Consensus 513 rLe~ELa~aree~a~Ls~~Lk~a~q~ie 540 (783)
+...++..++..+..|.+.|..++..++
T Consensus 74 ~~~~~l~~~q~~i~~lE~eL~~~r~em~ 101 (131)
T 3tnu_A 74 RYCMQLAQIQEMIGSVEEQLAQLRCEME 101 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445544444444444433
No 37
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=69.72 E-value=27 Score=30.21 Aligned_cols=93 Identities=15% Similarity=0.218 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCC--CCCCCCCCChhHHHHHHHHHHHHH
Q 003961 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDG--MVSSESFPGKEEMEQSLQKLEKDL 388 (783)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d--~~~~~sf~~kEeme~slq~L~~eL 388 (783)
....|+..+..+..+...++.++.++...++.+...- +| +.+-...-. +.... --..+.++.....+..++
T Consensus 14 ~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~-----~d-~~vy~~iG~vfv~~~~-~ea~~~L~~~~e~ie~~i 86 (117)
T 2zqm_A 14 QLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLP-----DD-AVVYKTVGTLIVKTTK-DKAVAELKEKIETLEVRL 86 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-----TT-CCEEEEETTEEEEECH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CC-cHhHHHhhHHHhhccH-HHHHHHHHHHHHHHHHHH
Confidence 3456666777777788888888888888888887332 11 111111111 11100 002344555555555555
Q ss_pred HHhHHHHHHHHHHHHHHHHHHH
Q 003961 389 KETCSERDKALQELTRLKQHLI 410 (783)
Q Consensus 389 ~e~~~E~dKa~kEL~RLRqHLL 410 (783)
+......+...+++..|+.+|-
T Consensus 87 ~~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 87 NALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555543
No 38
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=69.28 E-value=24 Score=30.64 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=21.4
Q ss_pred hhhHhhHHHHHHHHHHHHHH--h--hhhHHHHHHHHHHHHH
Q 003961 491 NVELLNLQTALGQYFAEIEA--K--GHLERELALAREESAK 527 (783)
Q Consensus 491 nvEl~NLQtALgqfqAE~EA--~--ErLe~ELa~aree~a~ 527 (783)
..|+.|++-+++.|..--|. . ...+.++..+|.++..
T Consensus 20 ~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~ 60 (86)
T 3swk_A 20 EVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDN 60 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 35888999999988443332 2 2344444555554443
No 39
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=68.00 E-value=15 Score=33.71 Aligned_cols=50 Identities=20% Similarity=0.220 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhh
Q 003961 515 ERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGK 564 (783)
Q Consensus 515 e~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K 564 (783)
..+|+.++.++..|.+.+...+..++...+|...+-.||+.+|...++..
T Consensus 10 ~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe~~ 59 (106)
T 4e61_A 10 QAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHTTQ 59 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566677777777888888888999999999999999998843
No 40
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=67.78 E-value=20 Score=32.39 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=21.1
Q ss_pred HHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHH
Q 003961 472 IIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFA 506 (783)
Q Consensus 472 ~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqA 506 (783)
+++.|+.+|..+-+++.+|...|.+|..-+.+-.+
T Consensus 3 ~~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~ 37 (94)
T 3jsv_C 3 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKI 37 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 35666666666666777766666666654433333
No 41
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=67.33 E-value=9.2 Score=34.73 Aligned_cols=36 Identities=31% Similarity=0.386 Sum_probs=26.3
Q ss_pred CCC-ChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003961 370 SFP-GKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHL 409 (783)
Q Consensus 370 sf~-~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHL 409 (783)
+|| .+|+ +..|+.++..+..|++++.+++..|.-.|
T Consensus 6 ~~~~~~e~----~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 6 SFLFSREE----ADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp ---CHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455 4554 66888999999888888888888877664
No 42
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=67.09 E-value=93 Score=29.98 Aligned_cols=53 Identities=26% Similarity=0.352 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003961 381 LQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQT 451 (783)
Q Consensus 381 lq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~ 451 (783)
|..|+..|+++..+.|+.-.|..| ++.+. +-..+..+....+|..||..|+..
T Consensus 2 ~~~lE~qlkeaae~ad~KyeEvaR-----~E~dL-------------EraEERae~aE~k~~eLEeeL~~v 54 (155)
T 2efr_A 2 MKQLEDKVEELLSKNYHLENEVAR-----LKKLL-------------ERAEERAELSEGKSAELEEELKTV 54 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH-----HHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677788888888888888888 22221 111124555667777777777754
No 43
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=66.66 E-value=76 Score=28.79 Aligned_cols=48 Identities=25% Similarity=0.225 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHH-HHhhhHHHHhhhhHHHHHHhhhHHHHHHHh
Q 003961 515 ERELALAREESAKLSEYL-KNADQRAEVSRSEKEEILVKLSHSEKMLAE 562 (783)
Q Consensus 515 e~ELa~aree~a~Ls~~L-k~a~q~ie~~~kEKeei~~KLs~~E~~l~e 562 (783)
+.+...+..++..||++| .+|+.-+..++++...+-.|..+.+..+.|
T Consensus 46 E~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 46 EEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444544332 334433333334433333444444444443
No 44
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=64.98 E-value=32 Score=31.85 Aligned_cols=81 Identities=23% Similarity=0.263 Sum_probs=42.0
Q ss_pred hhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhH
Q 003961 418 EKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNL 497 (783)
Q Consensus 418 ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NL 497 (783)
++++.- .|++|.. ++...|.+|...+. ++..++++|..++..+ ++|.- ..-
T Consensus 19 ~~~~~~--ei~~L~~-------~L~~AEeaL~~Kq~-----------~idelk~ei~q~~~~l----E~I~v-----Lka 69 (110)
T 2v4h_A 19 SHMASM--QLEDLRQ-------QLQQAEEALVAKQE-----------LIDKLKEEAEQHKIVM----ETVPV-----LKA 69 (110)
T ss_dssp CCSSCC--HHHHHHH-------HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH----THHHH-----HHH
T ss_pred hHhhHH--HHHHHHH-------HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH----HHHHH-----HHH
Confidence 455553 5666644 34555666665432 3445555555543333 22222 222
Q ss_pred HHH--HHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 003961 498 QTA--LGQYFAEIEAKGHLERELALAREESAK 527 (783)
Q Consensus 498 QtA--LgqfqAE~EA~ErLe~ELa~aree~a~ 527 (783)
|.- =+.|.+|..|.|++-++...+.+.++.
T Consensus 70 Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~ 101 (110)
T 2v4h_A 70 QADIYKADFQAERHAREKLVEKKEYLQEQLEQ 101 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccchhhHHHHHhHHHHHHHHHHH
Confidence 222 256777777776666666665555554
No 45
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=64.34 E-value=1.1e+02 Score=29.85 Aligned_cols=67 Identities=4% Similarity=-0.055 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhc
Q 003961 278 EITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 278 ~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (783)
+..+....+.+=.+=|...+..|+..+-..+-+.++.+-.....++.+...+...+..|...-..+-
T Consensus 5 ~~qqf~~~~~el~~Wl~e~~~~l~~~~~g~d~~~~~~ll~kh~~~~~el~~~~~~v~~l~~~~~~L~ 71 (326)
T 3kbt_A 5 EAQQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASRAQGLL 71 (326)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566666666667777777776554444457888888888888888888888888877666554
No 46
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=62.78 E-value=85 Score=35.39 Aligned_cols=91 Identities=23% Similarity=0.241 Sum_probs=50.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHH----HHHhHHHH-HHHHHHHHHHHHHHHHHHHH-H
Q 003961 385 EKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEE----LRENNEYQ-RAQILHLENVLKQTLAKQEE-F 458 (783)
Q Consensus 385 ~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeE----LreenE~~-R~~Is~lEraLK~~~a~qee-l 458 (783)
++++.+.+...+.+.+|...|++..-+.+. .|+.+.+.-.| |.+..|.- +..+-+.|+.|...+..|++ +
T Consensus 486 ~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~----~~~~~~~~~~e~~~ql~~kme~~~~~~~~e~~~~~~~~~~~~~~~~ 561 (592)
T 1f5n_A 486 EKEIEVERVKAESAQASAKMLHEMQRKNEQ----MMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLL 561 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777788888888777655543 34443222221 11111111 12234555556555555444 3
Q ss_pred hhhchHHHHhhHHHHHhhhhh
Q 003961 459 KMMNHSEIQKSKEIIDGLNNK 479 (783)
Q Consensus 459 k~~n~~E~~~ske~iedL~~~ 479 (783)
+..-..+...|+.+|.+|++.
T Consensus 562 ~~g~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 562 KEGFQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 445566777777777777665
No 47
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=61.71 E-value=34 Score=30.26 Aligned_cols=56 Identities=27% Similarity=0.388 Sum_probs=37.7
Q ss_pred HHHHHHHhhhhhhhHH-HhHHHHHhhchHHHHHHhhcccCcccchhHHHHHHHHHhhhHHHHHHHHHHhccc
Q 003961 233 LRMELEQQRNKFADVQ-LKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRR 303 (783)
Q Consensus 233 l~~el~~~~~k~~~~~-~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~ 303 (783)
|-+|+-.-|-|+.++. -++|-|.|+-- |..++..++..|..|-+||+|||.+|.++
T Consensus 24 L~qEi~~Lr~kv~elEnErlQyEkKLKs---------------TK~El~~Lq~qLe~kd~ei~rL~~~l~~~ 80 (81)
T 3qh9_A 24 LLQELRHLKIKVEELENERNQYEWKLKA---------------TKAEVAQLQEQVALKDAEIERLHSQLSRT 80 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------hHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 3344444444444443 35677776532 22678888999999999999999999864
No 48
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=60.86 E-value=1.3e+02 Score=33.83 Aligned_cols=107 Identities=9% Similarity=0.169 Sum_probs=75.6
Q ss_pred HHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHHHhHHHHHH
Q 003961 318 VVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKETCSERDK 397 (783)
Q Consensus 318 ~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e~~~E~dK 397 (783)
+...|-|.+.+++..+++|.-.|..+..++.+ -..-+-..++.|+..++....--+.
T Consensus 52 LqglL~kqerdv~~rI~kLkn~L~~~s~s~~~-----------------------s~~y~~~~~~~lk~~~~q~~dndn~ 108 (491)
T 1m1j_A 52 MQGIIDDTDQNYSQRIDNIRQQLADSQNKYKT-----------------------SNRVIVETINILKPGLEGAQQLDEN 108 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHhhcch-----------------------HHHHHHHHHHHHHHHHhhhccchhH
Confidence 44567788888999999999999988744211 1113334455666666666666667
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003961 398 ALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQT 451 (783)
Q Consensus 398 a~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~ 451 (783)
..+-..-||.|.+... ++.++.-.-|.-|+..++.++..|..||.+....
T Consensus 109 ~~e~S~eLe~ri~yIK----~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~q 158 (491)
T 1m1j_A 109 YGHVSTELRRRIVTLK----QRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIK 158 (491)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888999988874 4667766678888888888888888877766543
No 49
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=60.71 E-value=41 Score=28.75 Aligned_cols=91 Identities=15% Similarity=0.272 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCC--CCCCCCCCChhHHHHHHHHHHHHHH
Q 003961 312 VENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDG--MVSSESFPGKEEMEQSLQKLEKDLK 389 (783)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d--~~~~~sf~~kEeme~slq~L~~eL~ 389 (783)
...|+..+..+..+...++.++.++.-.++.+...- +| +.+-...-+ +.... --..+.++.....+..+++
T Consensus 10 f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~-----~d-~~vy~~iG~vfv~~~~-~e~~~~L~~~~e~i~~~i~ 82 (107)
T 1fxk_A 10 FQQLQQQAQAISVQKQTVEMQINETQKALEELSRAA-----DD-AEVYKSSGNILIRVAK-DELTEELQEKLETLQLREK 82 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-----TT-CCEEEEETTEEEEECH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CC-chHHHHHhHHHHhccH-HHHHHHHHHHHHHHHHHHH
Confidence 456666777777778888888888888888887331 11 111111111 11100 0023445555555555555
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q 003961 390 ETCSERDKALQELTRLKQHL 409 (783)
Q Consensus 390 e~~~E~dKa~kEL~RLRqHL 409 (783)
......+....++..|+.+|
T Consensus 83 ~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 83 TIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555666666665554
No 50
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=60.53 E-value=18 Score=31.30 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=23.5
Q ss_pred HHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHH
Q 003961 466 IQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFA 506 (783)
Q Consensus 466 ~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqA 506 (783)
++.-.+.|++|.+ .|..|+.+|.+||+.|..|++
T Consensus 35 Lr~kd~~I~eLEk-------~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 35 LRQRDALIDELEL-------ELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhc
Confidence 4444455666633 456777888899999999865
No 51
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=59.45 E-value=1.3e+02 Score=29.02 Aligned_cols=65 Identities=20% Similarity=0.206 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhhcc
Q 003961 521 AREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRMS 592 (783)
Q Consensus 521 aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ms 592 (783)
..+.+..|+..||+|..+++.+-+.- ...++.+.++-..+..-+..+..+..-|++++..|+.|.
T Consensus 75 yEeqIk~L~~kLKEAE~RAE~AERsv-------~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~ 139 (155)
T 2efr_A 75 YEEEIKVLSDKLKEAETRAEFAERSV-------TKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELL 139 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44457788899999999987654332 224444444444455556667777788888888888765
No 52
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=58.89 E-value=1.2e+02 Score=28.52 Aligned_cols=42 Identities=21% Similarity=0.209 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHHHhhhHH
Q 003961 498 QTALGQYFAEIEAK---GHLERELALAREESAKLSEYLKNADQRA 539 (783)
Q Consensus 498 QtALgqfqAE~EA~---ErLe~ELa~aree~a~Ls~~Lk~a~q~i 539 (783)
-....-+.|+.|.. -+|+++|.++++-+..-.+.-...++.+
T Consensus 11 eAC~dGLrAq~ECrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV 55 (121)
T 3mq7_A 11 EAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTV 55 (121)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666665 4788888888876554433333444443
No 53
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=58.62 E-value=16 Score=29.51 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003961 375 EEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIE 411 (783)
Q Consensus 375 Eeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe 411 (783)
++|+.....|..+-.++..++..+..|+..||+.|++
T Consensus 25 ~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~lla 61 (61)
T 1t2k_D 25 QSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLLA 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4677777778888888888888888888888887763
No 54
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=57.85 E-value=1.5e+02 Score=29.17 Aligned_cols=65 Identities=25% Similarity=0.259 Sum_probs=32.6
Q ss_pred hhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHH
Q 003961 491 NVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEK 558 (783)
Q Consensus 491 nvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~ 558 (783)
..++.+||++|++=.+.. -+...-++-+...+..|...|+..+.......-|+..+..+++..|+
T Consensus 68 eke~~~LQa~L~qEr~~r---~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEK 132 (168)
T 3o0z_A 68 DKDYYQLQAILEAERRDR---GHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEK 132 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 448899999998754332 22222222333344555555555554444433444444444444444
No 55
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=56.79 E-value=1.1e+02 Score=33.59 Aligned_cols=50 Identities=6% Similarity=0.085 Sum_probs=30.7
Q ss_pred HHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 003961 486 TIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEV 541 (783)
Q Consensus 486 aleAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~ 541 (783)
.+.-+-.+..+...+..||-.+. +..+.-+++.+..-.+.|+.-+..|+.
T Consensus 96 ~lk~~~~q~~dndn~~~e~s~eL------e~~i~~lk~~V~~q~~~ir~Lq~~l~~ 145 (390)
T 1deq_A 96 LMRGDFAKANNNDNTFKQINEDL------RSRIEILRRKVIEQVQRINLLQKNVRD 145 (390)
T ss_pred HHHHHHHhhccchHHHHHHHHHH------HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33444446677788888888777 566666666655544455555555444
No 56
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=56.68 E-value=9.3 Score=28.09 Aligned_cols=29 Identities=38% Similarity=0.591 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHH
Q 003961 312 VENLKRVVATLEKENNSLKMEKTELVAAL 340 (783)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L 340 (783)
+++|...++.|+.||..||....+|.++.
T Consensus 1 mdqlnallasleaenkqlkakveellakv 29 (31)
T 1p9i_A 1 MDQLNALLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45788899999999999999999999875
No 57
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=55.88 E-value=50 Score=28.49 Aligned_cols=37 Identities=27% Similarity=0.409 Sum_probs=28.4
Q ss_pred ChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003961 373 GKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHL 409 (783)
Q Consensus 373 ~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHL 409 (783)
.+-+|+..++.|+..|.++++++++...||.++=+-|
T Consensus 15 ~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~L 51 (72)
T 3cve_A 15 RNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEIL 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788888888888888888888888876653
No 58
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=55.27 E-value=1.2e+02 Score=31.73 Aligned_cols=82 Identities=17% Similarity=0.167 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHh
Q 003961 497 LQTALGQYFAEIEAKG---HLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEED 573 (783)
Q Consensus 497 LQtALgqfqAE~EA~E---rLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eD 573 (783)
++.+|.++.++.|+.. .|.++|..++.....+...-..+++.+-.+. +.+-+|.+|.++.+.|....+.+|...
T Consensus 382 i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (471)
T 3mq9_A 382 ITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALM---ASLDAEKAQGQKKVEELEGEITTLNHK 458 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777776663 5666666666665554433333444322111 112245667677777766666666666
Q ss_pred HHHHHHHH
Q 003961 574 NAKLRLAV 581 (783)
Q Consensus 574 n~kLR~AL 581 (783)
+.-++..+
T Consensus 459 ~~~~~~~~ 466 (471)
T 3mq9_A 459 LQDASAEV 466 (471)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555544
No 59
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=54.70 E-value=30 Score=28.68 Aligned_cols=63 Identities=17% Similarity=0.296 Sum_probs=35.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCcccchhHHHHHHHHHhhhHHHHHHHHH
Q 003961 219 LAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQM 298 (783)
Q Consensus 219 ~aa~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~ 298 (783)
++-++|+|+.-+.+-|.|++. .|+..+..|...-.+.+.++...+.|+.+=..-|.+|+.
T Consensus 11 l~eiRaQYE~ia~knr~EaE~--------------------~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~ 70 (77)
T 3trt_A 11 MRDVRQQYESVAAKNLQEAEE--------------------WYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTM 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHH--------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444788888888888887775 233333333333333444444455555555555556665
Q ss_pred Hhc
Q 003961 299 ELN 301 (783)
Q Consensus 299 ~l~ 301 (783)
+|.
T Consensus 71 el~ 73 (77)
T 3trt_A 71 EVD 73 (77)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 60
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=52.52 E-value=2.1e+02 Score=29.28 Aligned_cols=74 Identities=20% Similarity=0.203 Sum_probs=37.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhH-HHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHh
Q 003961 511 KGHLERELALAREESAKLSEYLKNADQR-AEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLN 589 (783)
Q Consensus 511 ~ErLe~ELa~aree~a~Ls~~Lk~a~q~-ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~ 589 (783)
.++|...+..+|..+.-.++.++..-.. ++...+..+++.. +....+.+++..+ .=-++-+++||.+-+..|+
T Consensus 171 ~~~l~~~~eeLr~~L~p~ae~lr~~l~~~~e~l~~~l~~~~~---~~~qq~e~f~~~~---~p~~e~~~~~l~~~~e~l~ 244 (273)
T 3s84_A 171 KARISASAEELRQRLAPLAEDVRGNLRGNTEGLQKSLAELGG---HLDQQVEEFRRRV---EPYGENFNKALVQQMEQLR 244 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHH---HHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHh---HhhHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666554443 3333333222222 3444555555543 3334445666666666554
Q ss_pred h
Q 003961 590 R 590 (783)
Q Consensus 590 ~ 590 (783)
.
T Consensus 245 ~ 245 (273)
T 3s84_A 245 Q 245 (273)
T ss_dssp H
T ss_pred H
Confidence 4
No 61
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=52.09 E-value=1.4e+02 Score=28.87 Aligned_cols=19 Identities=5% Similarity=0.141 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 003961 395 RDKALQELTRLKQHLIEKA 413 (783)
Q Consensus 395 ~dKa~kEL~RLRqHLLe~E 413 (783)
+.+..+++.-||..|.-.-
T Consensus 101 r~~l~kdlEelr~kL~P~~ 119 (191)
T 1nfn_A 101 QARLGADMEDVCGRLVQYR 119 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHH
Confidence 3444666666666655443
No 62
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=51.89 E-value=1.9e+02 Score=28.69 Aligned_cols=117 Identities=16% Similarity=0.274 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003961 375 EEMEQSLQKLEKDLKET-CSERDKALQELTRLKQHLIEKAQEE-SEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTL 452 (783)
Q Consensus 375 Eeme~slq~L~~eL~e~-~~E~dKa~kEL~RLRqHLLe~E~Ee-~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~ 452 (783)
+.+...+..|+..|.-. ..-+++...++..||..| .++-++ -.++. -..+||++. +..++..+...|.-
T Consensus 51 ~~l~~~~~~l~~~l~p~~ee~~~~l~~~~~~lr~~l-~kd~ee~r~~l~---Py~~el~~~---~~~~~eelr~~L~P-- 121 (243)
T 2a01_A 51 DSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEM-SKDLEEVKAKVQ---PYLDDFQKK---WQEEMELYRQKVEP-- 121 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCCSSCSSTTHH---HHHHHHHHH---HHHHHHHHHTTHHH--
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHH---HHHHHHHHH---HHhhHHHHHHHHHH--
Confidence 45555555555544322 223777888888888884 322211 11111 122334331 12222222222211
Q ss_pred HHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhh-hhhHhhHHHHHHHHHHHH
Q 003961 453 AKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAK-NVELLNLQTALGQYFAEI 508 (783)
Q Consensus 453 a~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAK-nvEl~NLQtALgqfqAE~ 508 (783)
....-..+.+..++.|+.+|.-..+.+..+ ..-+.+|+..|+-|-.+.
T Consensus 122 --------~~eel~~~~~~~~eel~~~L~p~~eelr~kl~~~veelk~~l~P~~ee~ 170 (243)
T 2a01_A 122 --------LRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDEL 170 (243)
T ss_dssp --------HHHHHHHHHHHHHHHHCCSCCSSTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 112223344566666777776666655555 446677777777765555
No 63
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=51.70 E-value=1.6e+02 Score=27.63 Aligned_cols=25 Identities=32% Similarity=0.318 Sum_probs=11.2
Q ss_pred HHHHHHHhhhhhhhhhHHhHHHHHH
Q 003961 555 HSEKMLAEGKGRANKLEEDNAKLRL 579 (783)
Q Consensus 555 ~~E~~l~e~K~~~~KL~eDn~kLR~ 579 (783)
.+.+.+.+++..+..|...+.+|-.
T Consensus 107 ~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 107 SSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 64
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=51.51 E-value=1.1e+02 Score=25.86 Aligned_cols=36 Identities=14% Similarity=0.164 Sum_probs=25.3
Q ss_pred HHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhh
Q 003961 555 HSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNR 590 (783)
Q Consensus 555 ~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ 590 (783)
+.+..+..++..+.-|++|..++-..|..+...|..
T Consensus 38 ~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 38 QLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666777777888887788777777754
No 65
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=51.21 E-value=1e+02 Score=27.01 Aligned_cols=36 Identities=22% Similarity=0.197 Sum_probs=21.3
Q ss_pred HHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHH
Q 003961 470 KEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYF 505 (783)
Q Consensus 470 ke~iedL~~~L~~~mealeAKnvEl~NLQtALgqfq 505 (783)
|++|-.||.+||..++-|..--.+..=|.+=+.+++
T Consensus 8 Ke~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~ 43 (93)
T 3s4r_A 8 KVELQELNDRFANLIDKVRFLEQQNKILLAELEQLK 43 (93)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456778999999988766553333333334444443
No 66
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=51.16 E-value=1.4e+02 Score=27.01 Aligned_cols=13 Identities=38% Similarity=0.519 Sum_probs=5.5
Q ss_pred hHHHHHHHHHHHH
Q 003961 514 LERELALAREESA 526 (783)
Q Consensus 514 Le~ELa~aree~a 526 (783)
|+.+|+.++.+.+
T Consensus 87 lE~eL~~~r~e~~ 99 (129)
T 3tnu_B 87 LEEALQKAKQDMA 99 (129)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHH
Confidence 3444444444433
No 67
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=49.49 E-value=1.5e+02 Score=26.86 Aligned_cols=38 Identities=21% Similarity=0.331 Sum_probs=18.9
Q ss_pred hhHHHHHHhh-hHHHHHHHhhhhhhhhhHHhHHHHHHHH
Q 003961 544 SEKEEILVKL-SHSEKMLAEGKGRANKLEEDNAKLRLAV 581 (783)
Q Consensus 544 kEKeei~~KL-s~~E~~l~e~K~~~~KL~eDn~kLR~AL 581 (783)
.|.+++.+.| ..+-.|-++.+....+++.-|.+|+.-|
T Consensus 54 ~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL 92 (97)
T 2eqb_B 54 KEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443 3445555555555555555555555544
No 68
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=48.61 E-value=1.4e+02 Score=33.43 Aligned_cols=48 Identities=13% Similarity=0.152 Sum_probs=29.1
Q ss_pred HhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 003961 488 EAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEV 541 (783)
Q Consensus 488 eAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~ 541 (783)
.-+-.+..+...+..||-.+. +..+.-+++.+..--+.|+.-+..|+.
T Consensus 96 k~~~~q~~dndn~~~e~S~eL------e~ri~yIK~kVd~qi~~IrvLq~~l~~ 143 (491)
T 1m1j_A 96 KPGLEGAQQLDENYGHVSTEL------RRRIVTLKQRVATQVNRIKALQNSIQE 143 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccchhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345577788888888777 556666666655433555555554443
No 69
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=45.89 E-value=1.6e+02 Score=28.63 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=21.5
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhh
Q 003961 508 IEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSE 545 (783)
Q Consensus 508 ~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kE 545 (783)
..+-..|+.+++.++.++..|...|++=...++...-|
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DE 104 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAA 104 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666666666666555555444444433
No 70
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=45.63 E-value=2.4e+02 Score=28.00 Aligned_cols=58 Identities=16% Similarity=0.141 Sum_probs=36.9
Q ss_pred HHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhh-HHHHHHHHHHhcccCCCcccCCCCCCC
Q 003961 298 MELNRREDGDANDVVENLKRVVATLEKENNSLKME-KTELVAALEKNRKSSNEKIFPDASEYP 359 (783)
Q Consensus 298 ~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~-~~eL~a~L~~~r~~~~~k~~~da~e~~ 359 (783)
-+|+..=+.-..|+++.|..-...|+.....+... +..|...+..+| .++..|..++-
T Consensus 36 s~l~~ql~~~~~d~~~~l~~~~~~l~~~l~p~~ee~~~~l~~~~~~lr----~~l~kd~ee~r 94 (243)
T 2a01_A 36 SALGKQLNLKLLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLR----QEMSKDLEEVK 94 (243)
T ss_dssp HHHHCSSCCSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTSSCCSSCSS
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHhhHHHHHHH----HHHHHHHHHHH
Confidence 34444334455677888888888888777666443 455666677777 44677766663
No 71
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=44.79 E-value=2.3e+02 Score=27.58 Aligned_cols=49 Identities=20% Similarity=0.248 Sum_probs=33.2
Q ss_pred hhhhhhhhHHhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHh
Q 003961 563 GKGRANKLEEDNAKLRLAVEQSMTRLNRMSVDSDFLVDRRIVIKLLVTYFQ 613 (783)
Q Consensus 563 ~K~~~~KL~eDn~kLR~ALeqsl~RL~~ms~dsD~~VDRRIVtkLLLTYf~ 613 (783)
.+.+...|..--..+...|+.+..+|..++.|.+.| +-|+.+|++..+.
T Consensus 82 ~~aR~~vL~ar~e~i~~v~~~a~~~L~~~~~d~~~Y--~~lL~~Li~eal~ 130 (233)
T 4efa_E 82 NKMRLKVLSAREQSLDGIFEETKEKLSGIANNRDEY--KPILQSLIVEALL 130 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHH--HHHHHHHHHHHHH
Confidence 344555566666677888999999999888555533 5577777766543
No 72
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=44.61 E-value=1.6e+02 Score=28.35 Aligned_cols=58 Identities=19% Similarity=0.137 Sum_probs=41.9
Q ss_pred HHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhhccC-CcchhhhHHHHHHH
Q 003961 550 LVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRMSV-DSDFLVDRRIVIKL 607 (783)
Q Consensus 550 ~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ms~-dsD~~VDRRIVtkL 607 (783)
.+|..|.++...--+.++.||+-++..+.+-|+.+=..|.+.+. ....+||=|=+..|
T Consensus 45 qgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQSlDiRKLrEL 103 (167)
T 4gkw_A 45 QGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQSLDMRKLGEL 103 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHhhhhHHHHHHH
Confidence 46777777777777778888888888888888888888865443 33467776655544
No 73
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=44.30 E-value=78 Score=28.86 Aligned_cols=92 Identities=15% Similarity=0.322 Sum_probs=49.3
Q ss_pred HhhHHhhhchhHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCcccchhHHHHHHHHHh
Q 003961 208 LADLLEEKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELN 287 (783)
Q Consensus 208 ~~d~le~~~~~~aa~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ 287 (783)
+-.+...|-..+-.....|...++..|.|+..-|..+..++..++.=...|.++...|..+. .+-.+++..++.-+.
T Consensus 11 aE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e---~~~~~~l~~~q~~i~ 87 (131)
T 3tnu_A 11 AEEWFFTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETK---GRYCMQLAQIQEMIG 87 (131)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 33334444444444556677778888888888888899999999988889999988887764 345677777777777
Q ss_pred hhHHHHHHHHHHhcc
Q 003961 288 GKLSELRRLQMELNR 302 (783)
Q Consensus 288 ek~sei~rlq~~l~~ 302 (783)
..-.+|.++..++.+
T Consensus 88 ~lE~eL~~~r~em~~ 102 (131)
T 3tnu_A 88 SVEEQLAQLRCEMEQ 102 (131)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777776665
No 74
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=43.75 E-value=1.9e+02 Score=26.31 Aligned_cols=32 Identities=28% Similarity=0.480 Sum_probs=19.9
Q ss_pred hhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHH
Q 003961 552 KLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQ 583 (783)
Q Consensus 552 KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeq 583 (783)
++...+....++...--|+++++..|++.|+.
T Consensus 91 rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 91 RLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555566666666677777777776653
No 75
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=42.70 E-value=93 Score=27.55 Aligned_cols=23 Identities=26% Similarity=0.114 Sum_probs=12.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Q 003961 429 ELRENNEYQRAQILHLENVLKQT 451 (783)
Q Consensus 429 ELreenE~~R~~Is~lEraLK~~ 451 (783)
+||-..+-+..+-.|+|+.||..
T Consensus 30 ~Lr~kv~elEnErlQyEkKLKsT 52 (81)
T 3qh9_A 30 HLKIKVEELENERNQYEWKLKAT 52 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333444444457778878755
No 76
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=41.43 E-value=37 Score=31.43 Aligned_cols=33 Identities=15% Similarity=0.229 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhc
Q 003961 312 VENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (783)
++.|+.++..|+++...+...+.+|+..+...+
T Consensus 8 ~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~ 40 (112)
T 1x79_B 8 VKKLQLMLRQANDQLEKTMKDKQELEDFIKQSS 40 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444333
No 77
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=41.33 E-value=50 Score=31.38 Aligned_cols=69 Identities=19% Similarity=0.127 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHH----hHHHHHHHHHHHHHHHHHHHH
Q 003961 381 LQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRE----NNEYQRAQILHLENVLKQTLA 453 (783)
Q Consensus 381 lq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELre----enE~~R~~Is~lEraLK~~~a 453 (783)
+.+|=.+|.+++.-.+.+.++-.+|.-.....+..-. +-+ ...+++++ .++..+.++..+|.+||-+.+
T Consensus 4 vtSL~~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~--~~~--~Elee~kqq~~~~~d~L~lQ~esmeaalkmEr~ 76 (130)
T 3cl3_D 4 ASGSLGELQESQSRLEAATKECQALEGRARAASEQAR--QLE--SEREALQQQHSVQVDQLRMQGQSVEAALRMERQ 76 (130)
T ss_dssp ---------------------------------------------------CTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788999999999999999998888777764222 111 12345444 588899999999999986644
No 78
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=41.23 E-value=25 Score=27.19 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=19.8
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHH
Q 003961 277 IEITEMRKELNGKLSELRRLQME 299 (783)
Q Consensus 277 ~~~~~~~~el~ek~sei~rlq~~ 299 (783)
.|-+|+|+++..|-.+|.+|+.+
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~e 29 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKE 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999998764
No 79
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=40.77 E-value=3.2e+02 Score=28.50 Aligned_cols=51 Identities=22% Similarity=0.350 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHh
Q 003961 374 KEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELREN 433 (783)
Q Consensus 374 kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELree 433 (783)
-|++...|.-+-.+| +++..+.+..||.+|--.-++=-.+++.. ++||+..
T Consensus 138 ~eelr~kL~Py~~EL------~~~~~~~~eeLr~~L~py~eeLr~kl~~~---veelr~~ 188 (307)
T 2l7b_A 138 TEELRVRLASHLRKL------RKRLLRDADDLQKRLAVYQAGAREGAERG---LSAIRER 188 (307)
T ss_dssp SHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHTSCCSSHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHH------HHHHHhhHHHHHHHHhhHHHHHHHHHHHH---HHHHHHH
Confidence 356666666665555 56788888889998766544334555554 5666653
No 80
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=40.21 E-value=76 Score=27.78 Aligned_cols=37 Identities=35% Similarity=0.542 Sum_probs=31.7
Q ss_pred ChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003961 373 GKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHL 409 (783)
Q Consensus 373 ~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHL 409 (783)
.+-+|+..++.|+..|.+++++++++..||.+|=+-|
T Consensus 21 rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~L 57 (79)
T 3cvf_A 21 RNAELEHQLRAMERSLEEARAERERARAEVGRAAQLL 57 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557888899999999999999999999999987764
No 81
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=39.13 E-value=29 Score=28.06 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHH
Q 003961 310 DVVENLKRVVATLEKENNSLKMEKTELVAALE 341 (783)
Q Consensus 310 ~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~ 341 (783)
.-++.||..++.|+.++..|+.+..+|.+.|.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677777777777777777777777777664
No 82
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=38.96 E-value=2.6e+02 Score=26.47 Aligned_cols=78 Identities=24% Similarity=0.187 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhhccCCcchh
Q 003961 521 AREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRMSVDSDFL 598 (783)
Q Consensus 521 aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ms~dsD~~ 598 (783)
.-+.+..|...|+.|+..++.+-+--+++..||...+..+.-...++..++.-+..|..-|...-..|+.+-...+.+
T Consensus 50 deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eeka 127 (147)
T 2b9c_A 50 DEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEEL 127 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Confidence 334477788889999999888777777788888888888888888888888888888888877777777766555543
No 83
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=38.60 E-value=70 Score=26.25 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003961 375 EEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIE 411 (783)
Q Consensus 375 Eeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe 411 (783)
++|+...+.|+.+-.++..+.+.+..|+..||+-|++
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4667777777777777777777777777777777654
No 84
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=37.52 E-value=2.5e+02 Score=25.95 Aligned_cols=24 Identities=25% Similarity=0.255 Sum_probs=17.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHh
Q 003961 389 KETCSERDKALQELTRLKQHLIEKA 413 (783)
Q Consensus 389 ~e~~~E~dKa~kEL~RLRqHLLe~E 413 (783)
-++|...++++-++..|+.. |.++
T Consensus 2 ~~t~~~~~~lq~~~~ql~~q-L~k~ 25 (112)
T 1x79_B 2 AETRDQVKKLQLMLRQANDQ-LEKT 25 (112)
T ss_dssp -CHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred cchHHHHHHHHHHHHHHHHH-HHHH
Confidence 46788888888888888875 4443
No 85
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=37.42 E-value=63 Score=27.86 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=12.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHH
Q 003961 388 LKETCSERDKALQELTRLKQHL 409 (783)
Q Consensus 388 L~e~~~E~dKa~kEL~RLRqHL 409 (783)
|+++..+..-+..-+..|.+.|
T Consensus 9 Lq~~E~~N~~Le~~v~~le~~L 30 (72)
T 3cve_A 9 LQEVEIRNKDLEGQLSEMEQRL 30 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 4455444555555666666664
No 86
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=37.30 E-value=62 Score=28.33 Aligned_cols=21 Identities=5% Similarity=0.196 Sum_probs=9.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHH
Q 003961 388 LKETCSERDKALQELTRLKQH 408 (783)
Q Consensus 388 L~e~~~E~dKa~kEL~RLRqH 408 (783)
|+++..+..-+..-+..|.+.
T Consensus 15 lq~~E~rN~~Le~~v~~le~~ 35 (79)
T 3cvf_A 15 VQDLETRNAELEHQLRAMERS 35 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHH
Confidence 334433344444445555554
No 87
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=36.81 E-value=56 Score=36.48 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=14.5
Q ss_pred hhhhhHHhHHHHHHHHHHHHHHHhhcc
Q 003961 566 RANKLEEDNAKLRLAVEQSMTRLNRMS 592 (783)
Q Consensus 566 ~~~KL~eDn~kLR~ALeqsl~RL~~ms 592 (783)
+..+++.++...|+++.++-.+|...+
T Consensus 434 e~~~~~~~~~~a~~~~~~~~~~l~~~~ 460 (575)
T 2i1j_A 434 ETRRLQEEVEDARRKQDEAAAALLAAT 460 (575)
T ss_dssp --------CHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445677777778888888888886644
No 88
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=36.08 E-value=29 Score=28.10 Aligned_cols=36 Identities=19% Similarity=0.359 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003961 375 EEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLI 410 (783)
Q Consensus 375 Eeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLL 410 (783)
++|+..+..|..+-.++..++..+..|+..||+.|+
T Consensus 25 ~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 25 ARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666667777777777766654
No 89
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=35.36 E-value=50 Score=36.88 Aligned_cols=36 Identities=17% Similarity=0.298 Sum_probs=28.5
Q ss_pred ChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003961 373 GKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQH 408 (783)
Q Consensus 373 ~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqH 408 (783)
..|++|...+.|+..|.....|..++..+|.+--..
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (575)
T 2i1j_A 329 ARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDM 364 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 578888888888888888888888888887665443
No 90
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=34.37 E-value=2.7e+02 Score=25.32 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003961 434 NEYQRAQILHLENVLKQTLAKQEE 457 (783)
Q Consensus 434 nE~~R~~Is~lEraLK~~~a~qee 457 (783)
++.....-..||..|+-...+.++
T Consensus 71 ~~~L~~~k~eLe~~l~el~~rlee 94 (129)
T 2fxo_A 71 CDQLIKNKIQLEAKVKEMNKRLED 94 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555544444443
No 91
>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A*
Probab=34.05 E-value=3.8e+02 Score=27.05 Aligned_cols=181 Identities=18% Similarity=0.212 Sum_probs=104.3
Q ss_pred HHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCC
Q 003961 284 KELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLD 363 (783)
Q Consensus 284 ~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~ 363 (783)
-||..|+..++..|..-.+ |=+.+..+-.---.+....++|=..+..+-.- .|
T Consensus 7 ~EL~~klE~l~~~q~~Y~~------------L~~~~~~l~~~~~~l~qtq~~lG~~f~~l~~~-----~p---------- 59 (224)
T 1i4d_A 7 LELELQIELLRETKRKYES------------VLQLGRALTAHLYSLLQTQHALGDAFADLSQK-----SP---------- 59 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----CG----------
T ss_pred HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----Cc----------
Confidence 4899999999998876544 44444444444555555566666555554411 11
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHH
Q 003961 364 GMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILH 443 (783)
Q Consensus 364 d~~~~~sf~~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~ 443 (783)
+....|...-+...++..=...|-.. ......+|..++.+.|.---.-.-+|+. ...||--.++ .
T Consensus 60 --~l~~~f~~~~~~~r~~~k~g~~Ll~~---L~~f~s~l~T~~~kaI~DT~lTIk~ye~---------aR~EY~ay~~-~ 124 (224)
T 1i4d_A 60 --ELQEEFGYNAETQKLLCKNGETLLGA---VNFFVSSINTLVTKTMEDTLMTVKQYEA---------ARLEYDAYRT-D 124 (224)
T ss_dssp --GGHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHTHHHHHHHHHHHHHH---------HHHHHHHHHH-H
T ss_pred --HHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHhHhccHHHHHHHHHHH---------HhHhHHHHHh-h
Confidence 12334555556565555444444444 7777888888887766432111112222 1344443332 1
Q ss_pred HHHHHHHHHHHHH---HHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhh-----hHhhHHHHHHHHHHHH
Q 003961 444 LENVLKQTLAKQE---EFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNV-----ELLNLQTALGQYFAEI 508 (783)
Q Consensus 444 lEraLK~~~a~qe---elk~~n~~E~~~ske~iedL~~~L~~~mealeAKnv-----El~NLQtALgqfqAE~ 508 (783)
+| ++...--..+ .++ ......+..++.-+.|+.++..+|+-++++.+ +|.-+++||..|++.-
T Consensus 125 ~e-e~~~~~~~~~~l~rve-~~q~~~~~ak~kf~kLR~DV~~KleLLd~~r~kv~~~qL~~~~~al~~y~~~~ 195 (224)
T 1i4d_A 125 LE-ELSLGPRDAGTRGRLE-SAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGN 195 (224)
T ss_dssp HH-HHC------------C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HhhcccccccchhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 1111100000 011 01346778889999999999999999999865 8899999999999876
No 92
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=33.66 E-value=2.8e+02 Score=27.10 Aligned_cols=103 Identities=10% Similarity=0.119 Sum_probs=48.5
Q ss_pred HhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhh
Q 003961 474 DGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKL 553 (783)
Q Consensus 474 edL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KL 553 (783)
..|.++|+.|..-+++.-.--.||. +.|+.-.+.+.....-...+ + -.++.++..++.+.+..+.+..||
T Consensus 23 ~qL~nrla~~~am~~sqqq~~eqlS---~eFqtal~eAq~Atd~ye~a---i----~n~~sA~~~~d~lekKl~~aq~kL 92 (158)
T 3tul_A 23 SQLESRLAVWQAMIESQKEMGIQVS---KEFQTALGEAQEATDLYEAS---I----KKTDTAKSVYDAATKKLTQAQNKL 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--C---CTHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH---h----cccchHHHHHHHHHHHHHHHHHHH
Confidence 4566777777666666433222221 23443333321111111111 1 124445555554433333444444
Q ss_pred hHHH---HHHHhhhhhhhhhHHhHHHHHHHHHHHHH
Q 003961 554 SHSE---KMLAEGKGRANKLEEDNAKLRLAVEQSMT 586 (783)
Q Consensus 554 s~~E---~~l~e~K~~~~KL~eDn~kLR~ALeqsl~ 586 (783)
++.. =.++..+..+..+..|+..+++.++.+.-
T Consensus 93 ~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~~kA~~ 128 (158)
T 3tul_A 93 QSLDPADPGYAQAEAAVEQAGKEATEAKEALDKATD 128 (158)
T ss_dssp TTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322 23555666777788888888888877654
No 93
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=32.48 E-value=78 Score=28.01 Aligned_cols=47 Identities=21% Similarity=0.310 Sum_probs=36.0
Q ss_pred HHHHhHHHHHH---HHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhc
Q 003961 222 ERAAYESQTRQ---LRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSL 268 (783)
Q Consensus 222 ~qa~~~~~i~~---l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~l 268 (783)
.|..++.+|+- +..||.+-|.-.-+++-+|+|=.++|..++.|+..|
T Consensus 15 LQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l 64 (81)
T 1wt6_A 15 LQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666642 566888888888889999999999999998775443
No 94
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=31.64 E-value=61 Score=26.24 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcc
Q 003961 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRK 345 (783)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~ 345 (783)
-+..|...++.|+.+|..|..++..|...+..++.
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888999999999999999988888873
No 95
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=30.92 E-value=1.5e+02 Score=25.58 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhc
Q 003961 313 ENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 313 ~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (783)
+.++..+..|+.....|+.++..+...|....
T Consensus 13 ~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~ 44 (112)
T 1l8d_A 13 TTIEEERNEITQRIGELKNKIGDLKTAIEELK 44 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555555666666666666666554
No 96
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=30.81 E-value=2.8e+02 Score=25.62 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=10.6
Q ss_pred HHHHHHHHhHHHHHHHHHH
Q 003961 425 KIIEELRENNEYQRAQILH 443 (783)
Q Consensus 425 k~IeELreenE~~R~~Is~ 443 (783)
.+|+.|.-+++.++.++..
T Consensus 15 ~~Ie~Lkreie~lk~ele~ 33 (120)
T 3i00_A 15 HLIERLYREISGLKAQLEN 33 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566666666555554433
No 97
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=30.00 E-value=63 Score=26.52 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhc
Q 003961 312 VENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (783)
.+.|...++.|+.+|..|+.++..|...+..++
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777777777766665
No 98
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=29.78 E-value=3.1e+02 Score=24.74 Aligned_cols=35 Identities=11% Similarity=0.341 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003961 375 EEMEQSLQKLEKDLKETCSERDKALQELTRLKQHL 409 (783)
Q Consensus 375 Eeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHL 409 (783)
.-.+..+..|++.|..+..++.++.-|+..++--+
T Consensus 16 ~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~ 50 (119)
T 3ol1_A 16 DLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDI 50 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788999999999999999999998887654
No 99
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=29.78 E-value=5e+02 Score=27.09 Aligned_cols=48 Identities=17% Similarity=0.249 Sum_probs=26.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhH
Q 003961 430 LRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCM 484 (783)
Q Consensus 430 LreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~m 484 (783)
+|.....|-..|..|...|.+.++.++ ..|+.+..+|..|+++|.+..
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 463 (471)
T 3mq9_A 416 VEAQAATANHTVMALMASLDAEKAQGQ-------KKVEELEGEITTLNHKLQDAS 463 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcchhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 333445556667777777777666533 134444455555555554443
No 100
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=29.52 E-value=2.7e+02 Score=23.94 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 003961 376 EMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEK 412 (783)
Q Consensus 376 eme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~ 412 (783)
+++..++.++..|..++..+.....++..|+.-+-..
T Consensus 7 ~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 7 ELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444556666677777777777777777777665444
No 101
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=29.24 E-value=3.7e+02 Score=25.34 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhH
Q 003961 434 NEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVEL 494 (783)
Q Consensus 434 nE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl 494 (783)
.-.+-..+..|-..|+++.+.. ...++.+..+|.+|+++|.+..+.++....+.
T Consensus 48 AaTCNqTV~tL~~SL~~ekaq~-------q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 48 AATANHTVMALMASLDAEKAQG-------QKKVEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455666777777888776653 23578888999999999988776666544443
No 102
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=29.20 E-value=2.1e+02 Score=27.20 Aligned_cols=51 Identities=16% Similarity=0.233 Sum_probs=39.1
Q ss_pred HHhhhhHHHHHHhh-hHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhh
Q 003961 540 EVSRSEKEEILVKL-SHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNR 590 (783)
Q Consensus 540 e~~~kEKeei~~KL-s~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ 590 (783)
.....|.+++.+.| ..+-.+-++.+....+++.-+.+|++.|...-.+|..
T Consensus 70 ~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~ 121 (135)
T 2e7s_A 70 DKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDT 121 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33457888888775 6888899999988899999999999988776555544
No 103
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=28.42 E-value=3.7e+02 Score=25.15 Aligned_cols=46 Identities=11% Similarity=0.099 Sum_probs=32.6
Q ss_pred hhhhhhHHhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHh
Q 003961 565 GRANKLEEDNAKLRLAVEQSMTRLNRMSVDSDFLVDRRIVIKLLVTYFQ 613 (783)
Q Consensus 565 ~~~~KL~eDn~kLR~ALeqsl~RL~~ms~dsD~~VDRRIVtkLLLTYf~ 613 (783)
.+...|.-...-+...++.+..+|..++.+.+ -+.++.+|++..+.
T Consensus 67 ~r~~~L~ar~eli~~v~~~a~~~L~~~~~~~~---Y~~~L~~Li~ea~~ 112 (187)
T 3v6i_A 67 VATARTQARGEVLEEVRRRVREALEALPQKPE---WPEVVRKLALEALE 112 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTT---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcc---HHHHHHHHHHHHHH
Confidence 34445556666778889999999999885532 26788888887654
No 104
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=28.28 E-value=1.3e+02 Score=24.45 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003961 375 EEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLI 410 (783)
Q Consensus 375 Eeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLL 410 (783)
++|+.....|+.+-.++..+++.+..|+..|++-|+
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666554
No 105
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=28.27 E-value=2.4e+02 Score=24.69 Aligned_cols=30 Identities=17% Similarity=0.247 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 003961 497 LQTALGQYFAEIEAKGHLERELALAREESA 526 (783)
Q Consensus 497 LQtALgqfqAE~EA~ErLe~ELa~aree~a 526 (783)
|+-.++|++||+++-.+-+.||..-+..+.
T Consensus 16 l~E~~~q~qaEl~sLrrT~~EL~~G~~KL~ 45 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRTEEDLKKGHQKLE 45 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhHHHH
Confidence 566789999999887666666665554443
No 106
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=27.87 E-value=1.3e+02 Score=24.42 Aligned_cols=33 Identities=33% Similarity=0.316 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhH
Q 003961 514 LERELALAREESAKLSEYLKNADQRAEVSRSEK 546 (783)
Q Consensus 514 Le~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEK 546 (783)
|.+++..+-..+.+|++.|+.|.+.|..++.+-
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677778888888888888887766553
No 107
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=27.29 E-value=83 Score=25.62 Aligned_cols=33 Identities=27% Similarity=0.363 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhc
Q 003961 312 VENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (783)
+..|...++.|+++|..|..++..|...+..++
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666677777777777766666666554
No 108
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=27.15 E-value=88 Score=27.31 Aligned_cols=52 Identities=31% Similarity=0.377 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHH
Q 003961 282 MRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVA 338 (783)
Q Consensus 282 ~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a 338 (783)
+++||-+|-.||++|+..+.- -+--+++|--.|-.|-=||+-|......|.+
T Consensus 23 Lr~eL~~Ke~eI~~L~e~i~l-----k~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 23 LQKELKSKEQEIRRLKEVIAL-----KNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----hcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
No 109
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=27.05 E-value=3.2e+02 Score=23.89 Aligned_cols=19 Identities=11% Similarity=0.045 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003961 515 ERELALAREESAKLSEYLK 533 (783)
Q Consensus 515 e~ELa~aree~a~Ls~~Lk 533 (783)
+.++..++..+..|...|.
T Consensus 43 E~ei~sL~kKiq~lE~eld 61 (101)
T 3u59_A 43 EEEQQGLQKKLKGTEDEVE 61 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444333333333
No 110
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=26.97 E-value=78 Score=25.46 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhc
Q 003961 312 VENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (783)
++.|...+..|+.+|..|..++..|...+..++
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667777777777777777777666665
No 111
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=26.45 E-value=3.2e+02 Score=23.71 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHhh
Q 003961 574 NAKLRLAVEQSMTRLNR 590 (783)
Q Consensus 574 n~kLR~ALeqsl~RL~~ 590 (783)
...|++.|-+.|..++.
T Consensus 97 ~~~L~~kf~e~m~~y~~ 113 (127)
T 1ez3_A 97 HSTLSRKFVEVMSEYNA 113 (127)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555555
No 112
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=26.25 E-value=4.4e+02 Score=25.33 Aligned_cols=21 Identities=14% Similarity=0.365 Sum_probs=13.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHH
Q 003961 388 LKETCSERDKALQELTRLKQH 408 (783)
Q Consensus 388 L~e~~~E~dKa~kEL~RLRqH 408 (783)
|+-...+.+.+.+||..|..|
T Consensus 56 l~~v~kdi~~a~~eL~~m~~~ 76 (141)
T 3okq_A 56 LETVSKDLENAQADVLKLQEF 76 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444566677888888888
No 113
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=26.10 E-value=3.4e+02 Score=23.91 Aligned_cols=19 Identities=16% Similarity=0.366 Sum_probs=7.0
Q ss_pred HHHhHHHHHHHHHHHHHHH
Q 003961 388 LKETCSERDKALQELTRLK 406 (783)
Q Consensus 388 L~e~~~E~dKa~kEL~RLR 406 (783)
|+++-.++..+..||..|+
T Consensus 27 L~~lEke~~~l~~el~~le 45 (96)
T 3q8t_A 27 LEDVEKNRKVVAENLEKVQ 45 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHH
Confidence 3333333333333333333
No 114
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=26.06 E-value=3.4e+02 Score=23.89 Aligned_cols=27 Identities=33% Similarity=0.235 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHH
Q 003961 312 VENLKRVVATLEKENNSLKMEKTELVA 338 (783)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a 338 (783)
+...-+.+++|-+||+.|...++.|+-
T Consensus 4 ~~gmgkevEnLi~EN~eLl~TKNaLnv 30 (77)
T 2w83_C 4 PEFMGREVENLILENTQLLETKNALNI 30 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888888999888888877653
No 115
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=25.90 E-value=1.1e+02 Score=27.42 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=32.2
Q ss_pred ChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003961 373 GKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHL 409 (783)
Q Consensus 373 ~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHL 409 (783)
++++||.....|..++..+..|..+..+|++.+|+.+
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888888999999999999999999999998874
No 116
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=25.66 E-value=1.9e+02 Score=28.92 Aligned_cols=79 Identities=13% Similarity=0.187 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 003961 375 EEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAK 454 (783)
Q Consensus 375 Eeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~ 454 (783)
...+..+..++..|..+..+.+.+.+++.|++ .|....---...++.....+..++.+.+..++++...+..|..+...
T Consensus 73 ~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~-~L~~~~~~s~~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~ 151 (369)
T 4dk0_A 73 NTRKAALASYQAQLVARKTAYDVALSNYQRLS-KLYGQKATSLDTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETN 151 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHH-HGGGSSCSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 117
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=25.64 E-value=1.3e+02 Score=26.56 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 003961 374 KEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKA 413 (783)
Q Consensus 374 kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E 413 (783)
..+|+.....|+.+=..++.+++.+.+|+..||+-|+..-
T Consensus 38 ~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p 77 (87)
T 1hjb_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLP 77 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 3467777788888888888888888888888888877643
No 118
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=25.05 E-value=6.3e+02 Score=28.51 Aligned_cols=9 Identities=33% Similarity=0.693 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 003961 500 ALGQYFAEI 508 (783)
Q Consensus 500 ALgqfqAE~ 508 (783)
.|.+|+.+.
T Consensus 67 ~l~kY~~dl 75 (497)
T 3iox_A 67 KLAKYQADL 75 (497)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444444
No 119
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=25.03 E-value=69 Score=28.22 Aligned_cols=62 Identities=19% Similarity=0.229 Sum_probs=0.0
Q ss_pred hhhHHHhHHHHHhhchHHHHHHhhcccCcccchhHHHHHHHHHhhhHHHHHHHHHHhccccc
Q 003961 244 FADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRRED 305 (783)
Q Consensus 244 ~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~ 305 (783)
+..+..|.|.=-.--..+|.|+..||.....-+.+...++..-.....++.+|+.+.+.+++
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~ 69 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
No 120
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=24.88 E-value=5.9e+02 Score=28.27 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhhHHHHHHH
Q 003961 310 DVVENLKRVVATLEKENNSLKMEKTELVAA 339 (783)
Q Consensus 310 ~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~ 339 (783)
..+..|+.+++.|+.....|+..+..+...
T Consensus 168 ~~i~~L~~~~~~l~~ki~~l~~~~~~~~~~ 197 (464)
T 1m1j_B 168 SSLRVLRAVIDSLHKKIQKLENAIATQTDY 197 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355566666666666666666655554443
No 121
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=24.45 E-value=1.3e+02 Score=24.26 Aligned_cols=34 Identities=26% Similarity=0.408 Sum_probs=27.3
Q ss_pred CChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003961 372 PGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHL 409 (783)
Q Consensus 372 ~~kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRqHL 409 (783)
|...+ ++.|+.++.+++.+.+.+.+++.-|+..|
T Consensus 16 p~~~d----~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 16 PENPE----IELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp CCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566 44888999999998988888888888875
No 122
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=24.24 E-value=4.6e+02 Score=24.78 Aligned_cols=120 Identities=19% Similarity=0.227 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003961 375 EEMEQSLQKLEKDLKE-TCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLA 453 (783)
Q Consensus 375 Eeme~slq~L~~eL~e-~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a 453 (783)
+++...+..|+..|.- +..-+.+..+++..||+. |.++ ++|+|..++-....+..
T Consensus 52 ~~l~~~~~~l~~~l~p~~~e~~~~l~~~~~~Lr~~-l~kd-------------lee~r~~l~P~~~e~~~---------- 107 (185)
T 3r2p_A 52 DSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQE-MSKD-------------LEEVKAKVQPYLDDFQK---------- 107 (185)
T ss_dssp SCSSCHHHHHHHHHCSCCHHHHHHHHHHHHHHHHH-HHHH-------------HHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH-Hhcc-------------HHHHHHHHHHHHHHHHH----------
Q ss_pred HHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhh-hhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 003961 454 KQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAK-NVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYL 532 (783)
Q Consensus 454 ~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAK-nvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~L 532 (783)
.+...+++|+.+|.-..+.+..+ +..+..|+..|.-|--+. +.++..-+..++..++-.++.+
T Consensus 108 --------------~~~~~~e~lr~~l~Py~~el~~~~~~~~e~Lr~~L~p~~e~l--r~~l~~~~e~lk~~l~Py~ee~ 171 (185)
T 3r2p_A 108 --------------KWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEM--RDRARAHVDALRTHLAPYSDEL 171 (185)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhhHHHH
Q ss_pred HH
Q 003961 533 KN 534 (783)
Q Consensus 533 k~ 534 (783)
+.
T Consensus 172 k~ 173 (185)
T 3r2p_A 172 RQ 173 (185)
T ss_dssp HH
T ss_pred HH
No 123
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=23.36 E-value=92 Score=26.93 Aligned_cols=34 Identities=24% Similarity=0.229 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhccc
Q 003961 313 ENLKRVVATLEKENNSLKMEKTELVAALEKNRKS 346 (783)
Q Consensus 313 ~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~ 346 (783)
..+...+..|++||..|+.++..|...+..+|.-
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~l 72 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778889999999999999999999998854
No 124
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=23.26 E-value=8.5e+02 Score=27.53 Aligned_cols=56 Identities=23% Similarity=0.190 Sum_probs=24.2
Q ss_pred HHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 003961 480 LANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQ 537 (783)
Q Consensus 480 L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q 537 (783)
-...++.+.++|.+|.==..|+.+.+++-.| --+.+|+.-.+++++--..+++++.
T Consensus 32 Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka--~Ye~~l~kY~~dlakY~~~~AeY~~ 87 (497)
T 3iox_A 32 YEAAVAANNAANAALTAENTAIKKRNADAKA--DYEAKLAKYQADLAKYQKDLADYPV 87 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555554444455555444322 2333344444444443333333333
No 125
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=23.10 E-value=2.9e+02 Score=26.58 Aligned_cols=34 Identities=12% Similarity=0.192 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003961 374 KEEMEQSLQKLEKDLKETCSERDKALQELTRLKQ 407 (783)
Q Consensus 374 kEeme~slq~L~~eL~e~~~E~dKa~kEL~RLRq 407 (783)
..++...++.++.+|..+..+.+.+..++.|.+.
T Consensus 55 ~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~ 88 (277)
T 2f1m_A 55 PATYQATYDSAKGDLAKAQAAANIAQLTVNRYQK 88 (277)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777888888888888888888888888764
No 126
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=22.20 E-value=91 Score=27.50 Aligned_cols=33 Identities=24% Similarity=0.264 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHHHHhccc
Q 003961 314 NLKRVVATLEKENNSLKMEKTELVAALEKNRKS 346 (783)
Q Consensus 314 sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~ 346 (783)
.+...++.|++||..|+.++..|...+..+|.-
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777777777777744
No 127
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=21.68 E-value=71 Score=25.46 Aligned_cols=24 Identities=42% Similarity=0.627 Sum_probs=19.7
Q ss_pred chHHHHHHHHHHHHHHhhhhhHhh
Q 003961 309 NDVVENLKRVVATLEKENNSLKME 332 (783)
Q Consensus 309 ~~~~~sLk~~~~~L~kEn~tlk~~ 332 (783)
+..|.+|...++.|+.||.|||..
T Consensus 2 snlvaqlenevaslenenetlkkk 25 (49)
T 3he5_A 2 SNLVAQLENEVASLENENETLKKK 25 (49)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhhcccHHHHHh
Confidence 457888899999999999998753
No 128
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=21.46 E-value=7.3e+02 Score=27.59 Aligned_cols=20 Identities=20% Similarity=0.210 Sum_probs=8.5
Q ss_pred HhhhhhHhhHHHHHHHHHHh
Q 003961 324 KENNSLKMEKTELVAALEKN 343 (783)
Q Consensus 324 kEn~tlk~~~~eL~a~L~~~ 343 (783)
+...+.+..+.+|+-.|.++
T Consensus 93 k~q~~V~~~LqeLe~~l~~l 112 (464)
T 1m1j_B 93 KQEKTVKPVLRDLKDRVAKF 112 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhHhHHHHHHHHHHHH
Confidence 33333444444444444444
No 129
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=20.90 E-value=33 Score=27.73 Aligned_cols=39 Identities=10% Similarity=0.284 Sum_probs=27.6
Q ss_pred ccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHH
Q 003961 302 RREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAAL 340 (783)
Q Consensus 302 ~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L 340 (783)
|-...++++-++.+-..++.|.+||..|+.+...|+.+|
T Consensus 19 GY~~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 19 GYDEDEVNEFLAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444455667888899999999999999999888887654
No 130
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=20.84 E-value=1.2e+02 Score=25.52 Aligned_cols=35 Identities=14% Similarity=0.213 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhc
Q 003961 310 DVVENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 310 ~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (783)
+-+..|+..+..|+.+...|+.+...|.+.|..+.
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35667777777777888888888888887777654
No 131
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=20.62 E-value=4.5e+02 Score=23.32 Aligned_cols=31 Identities=10% Similarity=0.007 Sum_probs=14.9
Q ss_pred HHHhhhhhhhhhHHhHHHHHHHHHHHHHHHh
Q 003961 559 MLAEGKGRANKLEEDNAKLRLAVEQSMTRLN 589 (783)
Q Consensus 559 ~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~ 589 (783)
....+...+.++..+...++..++.-...|+
T Consensus 96 r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~ 126 (133)
T 1fxk_C 96 QKNELESTLQKMGENLRAITDIMMKLSPQAE 126 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555544444443
No 132
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=20.42 E-value=2.4e+02 Score=22.85 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=20.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhh
Q 003961 429 ELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGL 476 (783)
Q Consensus 429 ELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL 476 (783)
+|+..+...-++-..|..+|+.+.. +|..+++++++|
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~-----------el~~Lkeele~L 49 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQ-----------QLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHh
Confidence 4444454555555555666665533 355666666666
No 133
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=20.25 E-value=2.5e+02 Score=24.93 Aligned_cols=43 Identities=30% Similarity=0.444 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHH
Q 003961 395 RDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHL 444 (783)
Q Consensus 395 ~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~l 444 (783)
+.+-..-|..||.||++. ++--.+.|++|...+++++..|..|
T Consensus 35 rqkekEqL~~LKkkl~~e-------l~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 35 RARAKEQLAALKKHKENE-------ISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445567788887322 2222334555555555555544443
No 134
>2jd3_A STBB protein; plasmid segregation, actin-like filaments, RHH2, PARM, plasmid, DNA binding, DNA binding protein; 2.8A {Escherichia coli}
Probab=20.24 E-value=63 Score=30.67 Aligned_cols=45 Identities=18% Similarity=0.298 Sum_probs=32.8
Q ss_pred hhhHHHHHHHHHHHHhcCCch-HHHHHHHHhcCCCHHHHHHh-hhccc
Q 003961 598 LVDRRIVIKLLVTYFQRNHSK-EVLDLMVRMLGFSDEDKQRI-GMAQQ 643 (783)
Q Consensus 598 ~VDRRIVtkLLLTYf~R~~sK-EVL~LMArMLgFSDEEK~ri-GL~~q 643 (783)
-+|.||- -||-+||+.+-+- +|..+|++|+||..++..-. .|+..
T Consensus 52 k~DpRLP-~LLA~~~~~~~t~~~l~~li~s~~g~~p~~~~i~~~l~~~ 98 (130)
T 2jd3_A 52 QLDPRLP-VLLTAILSEEFSADQVVTLLSQTTGWKPSQADIRAVLTEL 98 (130)
T ss_dssp HHCTHHH-HHHHHHCSTTCCHHHHHHHHHHHHCCCCCTHHHHHTC---
T ss_pred hcChhHH-HHHHHHhcCCCCHHHHHHHHHHHcCCCCchhHHHHHHHHh
Confidence 3788887 6888899977777 89999999999995554443 44443
No 135
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=20.21 E-value=4.5e+02 Score=23.14 Aligned_cols=71 Identities=20% Similarity=0.318 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCCCCCCCCcCCCCCCCCCCCChhHHHHHHHHHHHHHHH
Q 003961 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGMVSSESFPGKEEMEQSLQKLEKDLKE 390 (783)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~da~e~~~r~~d~~~~~sf~~kEeme~slq~L~~eL~e 390 (783)
+|+.+|.-+..|+-+..+..-.+..+++.+.... . ..+..+..+..|.+-+.-
T Consensus 3 ~MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e----------------------~-----~~~~~E~Ei~sL~kk~~~ 55 (101)
T 3u1c_A 3 HMDAIKKKMQMLKLDKENALDRAEQAEADKKAAE----------------------E-----RSKQLEDDIVQLEKQLRV 55 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------H-----HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------H-----HHHHhHHHHHHHHHHHHH
Confidence 4667777777777777777777777776666655 1 234555556666666666
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 003961 391 TCSERDKALQELTRLKQH 408 (783)
Q Consensus 391 ~~~E~dKa~kEL~RLRqH 408 (783)
+..+.|++...|...++-
T Consensus 56 lE~eld~~ee~L~ea~~k 73 (101)
T 3u1c_A 56 TEDSRDQVLEELHKSEDS 73 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666555544444
No 136
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=20.12 E-value=3.4e+02 Score=26.90 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 003961 376 EMEQSLQKLEKDLKETCSERDKALQEL 402 (783)
Q Consensus 376 eme~slq~L~~eL~e~~~E~dKa~kEL 402 (783)
+++..+..++.+|..++.+.+.+..+|
T Consensus 66 ~~~~~~~~~~a~l~~~~a~l~~a~~~~ 92 (341)
T 3fpp_A 66 QAENQIKEVEATLMELRAQRQQAEAEL 92 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445445555555544444444444333
No 137
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=20.07 E-value=1.3e+02 Score=26.14 Aligned_cols=47 Identities=26% Similarity=0.338 Sum_probs=31.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhc
Q 003961 279 ITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (783)
Q Consensus 279 ~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (783)
+.++...|..|..||+..+ ..|+.|+++...+...+.+|...|...|
T Consensus 21 i~eLq~~L~~K~eELr~kd-------------------~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRD-------------------ALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5566666666766665543 3466677777777777777777777766
Done!