Query 003961
Match_columns 783
No_of_seqs 47 out of 49
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 09:39:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003961.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/003961hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ap3a1 a.24.27.1 (A:12-196) H 53.1 47 0.0034 25.9 12.1 30 313-342 105-134 (185)
2 d1fxka_ a.2.5.1 (A:) Prefoldin 49.5 36 0.0026 27.8 8.6 34 312-345 10-43 (107)
3 d1seta1 a.2.7.1 (A:1-110) Sery 41.8 66 0.0048 26.0 9.0 45 310-354 64-108 (110)
4 d1ivsa1 a.2.7.3 (A:797-862) Va 38.0 27 0.002 26.5 5.5 59 276-334 3-63 (66)
5 d1bjta_ e.11.1.1 (A:) DNA topo 37.3 69 0.005 34.4 10.7 24 275-298 707-730 (760)
6 d1wu9a1 a.245.1.1 (A:191-249) 36.8 26 0.0019 27.3 5.2 39 524-562 2-40 (59)
7 d1uptb_ a.193.1.1 (B:) Golgi a 33.6 26 0.0019 27.4 4.7 35 604-638 8-42 (58)
8 d1ez3a_ a.47.2.1 (A:) Syntaxin 32.7 1.2E+02 0.0088 24.6 11.0 25 500-527 4-28 (124)
9 d1fxkc_ a.2.5.1 (C:) Prefoldin 32.6 78 0.0057 26.0 8.2 102 312-413 10-122 (133)
10 d1fxkc_ a.2.5.1 (C:) Prefoldin 32.4 1.2E+02 0.009 24.7 10.9 37 509-545 88-124 (133)
11 d1ivsa1 a.2.7.3 (A:797-862) Va 24.8 1.3E+02 0.0095 22.4 8.4 57 388-448 6-62 (66)
12 d1gqea_ e.38.1.1 (A:) Polypept 24.1 3E+02 0.022 26.8 12.0 22 504-525 43-64 (362)
No 1
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=53.13 E-value=47 Score=25.87 Aligned_cols=30 Identities=13% Similarity=0.090 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHhhhhhHhhHHHHHHHHHH
Q 003961 313 ENLKRVVATLEKENNSLKMEKTELVAALEK 342 (783)
Q Consensus 313 ~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~ 342 (783)
..+...+..+.+....+...+..+......
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (185)
T d2ap3a1 105 KQLDDVLKEKYKLHSDYAKAYKKAVNSEKT 134 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 344444444444444444444444444333
No 2
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=49.45 E-value=36 Score=27.79 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcc
Q 003961 312 VENLKRVVATLEKENNSLKMEKTELVAALEKNRK 345 (783)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~ 345 (783)
...|+..+..+......|..++++..-.|+.+..
T Consensus 10 ~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~ 43 (107)
T d1fxka_ 10 FQQLQQQAQAISVQKQTVEMQINETQKALEELSR 43 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5667777778888888899999999998988883
No 3
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=41.76 E-value=66 Score=26.03 Aligned_cols=45 Identities=22% Similarity=0.096 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhcccCCCcccCC
Q 003961 310 DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPD 354 (783)
Q Consensus 310 ~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~~~~~k~~~d 354 (783)
...+.|+.....|.++...|+.+..+++..|..+--..|+-+.++
T Consensus 64 ~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ll~iPNi~~~~ 108 (110)
T d1seta1 64 EEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPWPG 108 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcc
Confidence 345678888889999999999999999999998887777766655
No 4
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=38.02 E-value=27 Score=26.49 Aligned_cols=59 Identities=15% Similarity=0.103 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHhccc--ccCCcchHHHHHHHHHHHHHHhhhhhHhhHH
Q 003961 276 SIEITEMRKELNGKLSELRRLQMELNRR--EDGDANDVVENLKRVVATLEKENNSLKMEKT 334 (783)
Q Consensus 276 s~~~~~~~~el~ek~sei~rlq~~l~~~--e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~ 334 (783)
.-|+.+|.++|..-..+|.+++..|+-. -+..+.+.|+.-+..++.+..+...++..+.
T Consensus 3 ~~E~~RL~K~l~kl~~~i~~~~~kL~N~~F~~kAP~~Vv~~~k~kl~~~~~~~~~l~~~l~ 63 (66)
T d1ivsa1 3 EEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREALS 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSTTHHHHSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999853 2445667888888887777777666655544
No 5
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=37.33 E-value=69 Score=34.45 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=19.9
Q ss_pred chhHHHHHHHHHhhhHHHHHHHHH
Q 003961 275 TSIEITEMRKELNGKLSELRRLQM 298 (783)
Q Consensus 275 ts~~~~~~~~el~ek~sei~rlq~ 298 (783)
|..++.+|.+|+.++..||..|+.
T Consensus 707 T~eei~kL~~E~~~l~~Ei~~L~~ 730 (760)
T d1bjta_ 707 TKERYQKLLKQKQEKETELENLLK 730 (760)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC
Confidence 456799999999999999988863
No 6
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.77 E-value=26 Score=27.30 Aligned_cols=39 Identities=23% Similarity=0.202 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHh
Q 003961 524 ESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAE 562 (783)
Q Consensus 524 e~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e 562 (783)
+++.|++.+.+.+..++..-+|+...-.||+.+|..-++
T Consensus 2 e~~~L~~ei~elk~~v~~lEkERdFYF~KLRdIEilcQ~ 40 (59)
T d1wu9a1 2 EAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQE 40 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 567778788888888888889999999999999988776
No 7
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.62 E-value=26 Score=27.40 Aligned_cols=35 Identities=26% Similarity=0.532 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhcCCCHHHHHHh
Q 003961 604 VIKLLVTYFQRNHSKEVLDLMVRMLGFSDEDKQRI 638 (783)
Q Consensus 604 VtkLLLTYf~R~~sKEVL~LMArMLgFSDEEK~ri 638 (783)
+.|+|..|.-...++-+--.||.++-|++++-++|
T Consensus 8 LRnvLfeYMmG~E~~tlaKVi~av~kF~~~Q~q~i 42 (58)
T d1uptb_ 8 LRKVLFEYMMGRETKTMAKVITTVLKFPDDQTQKI 42 (58)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHcCcchhHHHHHHHHHHhCCHHHHHHH
Confidence 57899999998888889999999999999998887
No 8
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=32.68 E-value=1.2e+02 Score=24.61 Aligned_cols=25 Identities=12% Similarity=0.267 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 003961 500 ALGQYFAEIEAKGHLERELALAREESAK 527 (783)
Q Consensus 500 ALgqfqAE~EA~ErLe~ELa~aree~a~ 527 (783)
.|++|+.+++.- ..++..++..+..
T Consensus 4 ~m~~Ff~eV~~I---r~~I~~i~~~v~~ 28 (124)
T d1ez3a_ 4 FMDEFFEQVEEI---RGFIDKIAENVEE 28 (124)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 477888888653 4445554444444
No 9
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=32.64 E-value=78 Score=26.00 Aligned_cols=102 Identities=11% Similarity=0.166 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhc---ccCCCccc-CCCCC--CCCcCCCCCC----C-CCCCChhHHHHH
Q 003961 312 VENLKRVVATLEKENNSLKMEKTELVAALEKNR---KSSNEKIF-PDASE--YPSRLDGMVS----S-ESFPGKEEMEQS 380 (783)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r---~~~~~k~~-~da~e--~~~r~~d~~~----~-~sf~~kEeme~s 380 (783)
++.|+..+..|..+...|...+.++...+..+. ...+..+. |=... ..-+..+.++ . ..|-..-.++.-
T Consensus 10 ~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~~~~~~e~lvplg~~~~v~~~i~~~~~vlV~lG~g~~vE~~~~eA 89 (133)
T d1fxkc_ 10 LNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDA 89 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEEEEHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCceEEEEEecCCCceEEEecCCeeeeecHHHH
Confidence 445666677777777777776666665544443 32222221 10000 0111111111 0 111122345556
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 003961 381 LQKLEKDLKETCSERDKALQELTRLKQHLIEKA 413 (783)
Q Consensus 381 lq~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E 413 (783)
..-+.+-+++.....++...++..+++++-..+
T Consensus 90 ~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~ 122 (133)
T d1fxkc_ 90 MESIKSQKNELESTLQKMGENLRAITDIMMKLS 122 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788888888888888888888888866664
No 10
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=32.44 E-value=1.2e+02 Score=24.69 Aligned_cols=37 Identities=11% Similarity=0.075 Sum_probs=18.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhh
Q 003961 509 EAKGHLERELALAREESAKLSEYLKNADQRAEVSRSE 545 (783)
Q Consensus 509 EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kE 545 (783)
+|.+.+...+..+...+..+...++.....+.....+
T Consensus 88 eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~ 124 (133)
T d1fxkc_ 88 DAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQ 124 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555554444444443333
No 11
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=24.76 E-value=1.3e+02 Score=22.43 Aligned_cols=57 Identities=14% Similarity=0.123 Sum_probs=27.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 003961 388 LKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVL 448 (783)
Q Consensus 388 L~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraL 448 (783)
+.-+..+.+++.+++.++...|-... =-+++-.+ +|++-++..+....++..++..|
T Consensus 6 ~~RL~K~l~kl~~~i~~~~~kL~N~~--F~~kAP~~--Vv~~~k~kl~~~~~~~~~l~~~l 62 (66)
T d1ivsa1 6 RRRQEKRLKELLALAERSQRKLASPG--FREKAPKE--VVEAEEARLKENLEQAERIREAL 62 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTT--HHHHSCTT--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCChH--HHHhCCHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555666666666643221 13455554 55555444444444444444433
No 12
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=24.06 E-value=3e+02 Score=26.78 Aligned_cols=22 Identities=18% Similarity=0.102 Sum_probs=10.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHH
Q 003961 504 YFAEIEAKGHLERELALAREES 525 (783)
Q Consensus 504 fqAE~EA~ErLe~ELa~aree~ 525 (783)
|..+.+-+..+..|+..++..+
T Consensus 43 fW~D~~kAqkl~KE~s~L~~iV 64 (362)
T d1gqea_ 43 VWNEPERAQALGKERSSLEAVV 64 (362)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHH
T ss_pred hhhCHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
Done!