Query 003962
Match_columns 783
No_of_seqs 387 out of 3676
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 09:41:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003962.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003962hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s28_A Sucrose synthase 1; gly 100.0 5E-174 2E-178 1555.1 65.3 778 6-783 30-807 (816)
2 2r60_A Glycosyl transferase, g 100.0 1.7E-45 5.7E-50 421.5 39.4 434 251-745 4-459 (499)
3 3fro_A GLGA glycogen synthase; 100.0 4.5E-43 1.5E-47 390.8 39.8 400 254-744 2-429 (439)
4 3c48_A Predicted glycosyltrans 100.0 5.4E-43 1.9E-47 392.3 36.4 405 252-744 18-424 (438)
5 3vue_A GBSS-I, granule-bound s 100.0 2.6E-42 8.9E-47 400.2 36.7 439 254-747 9-513 (536)
6 3okp_A GDP-mannose-dependent a 100.0 3.9E-40 1.3E-44 362.3 34.3 368 253-744 3-378 (394)
7 2qzs_A Glycogen synthase; glyc 100.0 2.7E-40 9.2E-45 376.4 32.8 427 255-744 1-475 (485)
8 1rzu_A Glycogen synthase 1; gl 100.0 3.8E-40 1.3E-44 375.1 32.3 431 255-744 1-474 (485)
9 2jjm_A Glycosyl transferase, g 100.0 3.2E-39 1.1E-43 357.4 36.2 358 275-744 24-384 (394)
10 2gek_A Phosphatidylinositol ma 100.0 1.5E-38 5E-43 351.6 28.3 364 252-745 18-383 (406)
11 2iw1_A Lipopolysaccharide core 100.0 1.5E-39 5.1E-44 355.6 18.4 366 255-744 1-370 (374)
12 2x6q_A Trehalose-synthase TRET 100.0 4.8E-38 1.6E-42 350.5 30.8 371 254-744 40-413 (416)
13 3oy2_A Glycosyltransferase B73 100.0 3E-37 1E-41 343.4 26.5 359 255-744 1-389 (413)
14 2iuy_A Avigt4, glycosyltransfe 100.0 6.6E-36 2.3E-40 324.4 26.2 311 254-744 3-334 (342)
15 2x0d_A WSAF; GT4 family, trans 100.0 2.9E-33 9.9E-38 314.4 15.9 346 252-737 44-402 (413)
16 1f0k_A MURG, UDP-N-acetylgluco 100.0 2E-30 6.8E-35 283.2 27.1 339 253-744 5-356 (364)
17 3nb0_A Glycogen [starch] synth 100.0 6.4E-30 2.2E-34 295.4 25.4 335 382-745 180-633 (725)
18 2hy7_A Glucuronosyltransferase 100.0 1.5E-31 5E-36 299.6 11.1 245 383-744 124-378 (406)
19 2vsy_A XCC0866; transferase, g 100.0 2.7E-28 9.1E-33 283.2 26.7 173 537-744 368-558 (568)
20 3beo_A UDP-N-acetylglucosamine 100.0 8.9E-29 3E-33 270.9 19.2 275 383-742 95-373 (375)
21 1uqt_A Alpha, alpha-trehalose- 100.0 9.1E-28 3.1E-32 274.4 26.1 316 382-745 122-454 (482)
22 1vgv_A UDP-N-acetylglucosamine 100.0 5.3E-28 1.8E-32 265.8 17.5 284 383-744 86-375 (384)
23 2bfw_A GLGA glycogen synthase; 99.9 6.2E-27 2.1E-31 234.2 21.0 192 500-730 2-200 (200)
24 3qhp_A Type 1 capsular polysac 99.9 1.4E-25 4.8E-30 217.8 18.4 163 548-737 2-166 (166)
25 3t5t_A Putative glycosyltransf 99.9 1.6E-24 5.3E-29 246.3 26.5 321 372-744 137-472 (496)
26 1v4v_A UDP-N-acetylglucosamine 99.9 1.2E-23 4E-28 231.0 22.1 269 382-743 90-362 (376)
27 2f9f_A First mannosyl transfer 99.9 3.4E-23 1.1E-27 204.5 14.4 152 545-721 20-174 (177)
28 2xci_A KDO-transferase, 3-deox 99.9 1.5E-22 5.1E-27 224.2 18.9 207 445-730 148-365 (374)
29 3otg_A CALG1; calicheamicin, T 99.8 3.8E-19 1.3E-23 197.3 23.0 161 546-743 241-408 (412)
30 3rhz_A GTF3, nucleotide sugar 99.8 3.6E-19 1.2E-23 194.5 20.9 246 382-739 73-330 (339)
31 2iyf_A OLED, oleandomycin glyc 99.8 7.5E-18 2.6E-22 188.4 23.0 162 546-743 231-399 (430)
32 3s2u_A UDP-N-acetylglucosamine 99.8 3.5E-17 1.2E-21 180.5 24.7 345 253-744 1-357 (365)
33 3tsa_A SPNG, NDP-rhamnosyltran 99.8 1.9E-18 6.6E-23 190.6 12.3 161 547-742 218-387 (391)
34 4fzr_A SSFS6; structural genom 99.7 8.9E-18 3E-22 186.1 14.5 156 546-740 226-397 (398)
35 3dzc_A UDP-N-acetylglucosamine 99.7 1.7E-17 5.7E-22 185.1 16.7 277 383-741 111-393 (396)
36 3ot5_A UDP-N-acetylglucosamine 99.7 9.7E-17 3.3E-21 179.4 19.0 272 382-740 113-390 (403)
37 3ia7_A CALG4; glycosysltransfe 99.7 3.8E-16 1.3E-20 172.1 23.2 161 546-743 230-398 (402)
38 3oti_A CALG3; calicheamicin, T 99.7 2.4E-16 8.2E-21 174.7 20.8 157 546-742 231-396 (398)
39 3rsc_A CALG2; TDP, enediyne, s 99.7 1.6E-14 5.6E-19 160.4 27.9 161 546-743 246-413 (415)
40 2p6p_A Glycosyl transferase; X 99.6 4.3E-14 1.5E-18 155.5 25.2 155 548-742 211-378 (384)
41 2c4m_A Glycogen phosphorylase; 99.5 1.9E-13 6.4E-18 160.8 17.1 332 383-745 289-719 (796)
42 2yjn_A ERYCIII, glycosyltransf 99.5 3.8E-13 1.3E-17 151.3 18.6 157 548-743 268-435 (441)
43 2gj4_A Glycogen phosphorylase, 99.5 2.9E-12 9.8E-17 151.3 25.0 234 440-700 427-710 (824)
44 1l5w_A Maltodextrin phosphoryl 99.5 5E-13 1.7E-17 157.2 18.4 333 383-745 299-730 (796)
45 4hwg_A UDP-N-acetylglucosamine 99.5 1.8E-13 6.2E-18 152.0 13.9 272 382-741 93-373 (385)
46 2iya_A OLEI, oleandomycin glyc 99.4 1.9E-11 6.5E-16 136.3 27.6 161 546-743 254-421 (424)
47 3h4t_A Glycosyltransferase GTF 99.4 5.7E-12 2E-16 140.3 20.8 156 546-743 220-382 (404)
48 1iir_A Glycosyltransferase GTF 99.3 5.1E-11 1.7E-15 132.8 20.9 153 547-741 238-398 (415)
49 4amg_A Snogd; transferase, pol 99.3 1.5E-11 5.3E-16 135.3 15.0 158 546-741 236-398 (400)
50 1rrv_A Glycosyltransferase GTF 99.2 1.2E-10 4.2E-15 129.6 18.7 137 547-724 237-383 (416)
51 3q3e_A HMW1C-like glycosyltran 99.2 1.3E-10 4.4E-15 134.4 18.2 186 540-749 433-628 (631)
52 2o6l_A UDP-glucuronosyltransfe 99.0 1E-09 3.5E-14 106.7 10.5 134 547-719 21-163 (170)
53 4gyw_A UDP-N-acetylglucosamine 98.0 9.8E-05 3.3E-09 88.2 18.8 183 536-744 513-704 (723)
54 2vch_A Hydroquinone glucosyltr 98.0 0.0034 1.1E-07 71.3 30.2 70 627-704 346-427 (480)
55 2pq6_A UDP-glucuronosyl/UDP-gl 98.0 0.0019 6.4E-08 73.3 27.7 151 548-725 296-453 (482)
56 1ygp_A Yeast glycogen phosphor 97.9 0.00041 1.4E-08 82.1 20.4 146 537-690 583-761 (879)
57 2c1x_A UDP-glucose flavonoid 3 97.8 0.00067 2.3E-08 76.5 20.1 147 546-724 270-425 (456)
58 2acv_A Triterpene UDP-glucosyl 97.7 0.0077 2.6E-07 67.9 25.6 134 547-704 276-423 (463)
59 3hbf_A Flavonoid 3-O-glucosylt 97.6 0.0065 2.2E-07 68.5 23.9 145 547-724 273-427 (454)
60 1psw_A ADP-heptose LPS heptosy 97.4 0.0079 2.7E-07 64.4 19.5 108 538-670 172-286 (348)
61 3hbm_A UDP-sugar hydrolase; PS 97.1 0.024 8.1E-07 59.8 18.9 94 548-671 158-251 (282)
62 3tov_A Glycosyl transferase fa 96.4 0.15 5.1E-06 55.0 19.8 105 540-670 179-286 (349)
63 2gt1_A Lipopolysaccharide hept 90.4 0.9 3.1E-05 47.9 9.8 98 548-670 179-278 (326)
64 2jzc_A UDP-N-acetylglucosamine 84.1 0.93 3.2E-05 45.9 5.0 65 631-703 123-196 (224)
65 3l7i_A Teichoic acid biosynthe 83.7 3.1 0.00011 49.2 10.1 135 536-704 528-681 (729)
66 1k68_A Phytochrome response re 69.4 55 0.0019 28.2 12.3 109 580-704 3-129 (140)
67 3kht_A Response regulator; PSI 68.5 51 0.0017 29.0 11.7 111 579-705 5-127 (144)
68 3heb_A Response regulator rece 67.5 48 0.0017 29.5 11.4 109 580-704 5-133 (152)
69 4g65_A TRK system potassium up 63.9 1.8E+02 0.0061 32.1 19.3 139 550-704 211-365 (461)
70 1k66_A Phytochrome response re 62.8 72 0.0025 27.8 11.5 110 579-704 6-136 (149)
71 2zay_A Response regulator rece 62.4 56 0.0019 28.7 10.7 110 579-706 8-128 (147)
72 2dvz_A BUGE, putative exported 57.7 1.5E+02 0.005 31.0 14.4 149 549-722 116-281 (314)
73 4b4o_A Epimerase family protei 57.5 5.6 0.00019 40.9 3.2 33 255-316 1-33 (298)
74 2f5x_A BUGD; periplasmic bindi 56.5 1.5E+02 0.005 31.0 14.1 149 549-722 112-277 (312)
75 3h5i_A Response regulator/sens 56.3 1E+02 0.0035 26.9 14.0 107 580-704 6-122 (140)
76 2qvg_A Two component response 55.2 86 0.0029 27.2 10.6 107 580-702 8-131 (143)
77 2pln_A HP1043, response regula 55.2 59 0.002 28.2 9.4 106 578-704 17-131 (137)
78 3ius_A Uncharacterized conserv 54.4 5.7 0.00019 40.4 2.6 35 252-316 3-37 (286)
79 3grc_A Sensor protein, kinase; 52.9 1.1E+02 0.0039 26.4 12.8 109 579-705 6-126 (140)
80 2phj_A 5'-nucleotidase SURE; S 50.8 65 0.0022 32.9 9.7 38 254-318 1-38 (251)
81 3gt7_A Sensor protein; structu 48.4 1.5E+02 0.005 26.4 11.8 111 579-707 7-128 (154)
82 2qpq_A Protein BUG27; alpha/be 46.9 1.3E+02 0.0044 31.2 11.7 149 549-722 103-268 (301)
83 3jte_A Response regulator rece 46.6 1.4E+02 0.0049 25.8 12.1 107 580-704 4-121 (143)
84 4e7p_A Response regulator; DNA 46.0 1.4E+02 0.0047 26.3 10.5 75 630-704 55-138 (150)
85 4dad_A Putative pilus assembly 46.0 78 0.0027 27.8 8.7 66 640-705 67-140 (146)
86 1j9j_A Stationary phase surviV 45.5 1.7E+02 0.0057 29.7 11.8 35 380-414 83-128 (247)
87 4gi5_A Quinone reductase; prot 45.4 23 0.00079 36.8 5.5 36 254-307 22-57 (280)
88 1i3c_A Response regulator RCP1 44.4 1.6E+02 0.0056 25.8 12.0 110 579-704 8-135 (149)
89 4fle_A Esterase; structural ge 44.2 1.6E+02 0.0053 27.3 11.1 36 546-588 136-171 (202)
90 3ilh_A Two component response 43.2 1.5E+02 0.0052 25.5 10.2 110 579-704 9-137 (146)
91 3eul_A Possible nitrate/nitrit 43.1 1.7E+02 0.0058 25.7 10.6 112 578-705 14-134 (152)
92 3h1g_A Chemotaxis protein CHEY 41.9 1.6E+02 0.0056 25.0 11.5 108 580-704 6-125 (129)
93 3hzh_A Chemotaxis response reg 41.5 1.5E+02 0.0051 26.4 10.1 108 580-704 37-155 (157)
94 3cg0_A Response regulator rece 38.0 1.9E+02 0.0065 24.7 11.0 108 579-704 9-126 (140)
95 3m2p_A UDP-N-acetylglucosamine 37.3 19 0.00064 37.0 3.3 35 253-316 1-35 (311)
96 3n53_A Response regulator rece 37.1 2E+02 0.0069 24.7 11.5 106 580-704 4-120 (140)
97 3cg4_A Response regulator rece 36.4 2E+02 0.007 24.6 13.6 109 579-705 7-126 (142)
98 2vzf_A NADH-dependent FMN redu 36.3 33 0.0011 33.1 4.7 37 253-307 1-38 (197)
99 2j48_A Two-component sensor ki 35.4 1.2E+02 0.004 24.9 7.7 104 581-702 3-114 (119)
100 1d4a_A DT-diaphorase, quinone 35.3 44 0.0015 34.3 5.7 37 253-307 1-37 (273)
101 3to5_A CHEY homolog; alpha(5)b 35.3 1.7E+02 0.0057 26.3 9.1 109 579-704 12-131 (134)
102 2qr3_A Two-component system re 34.9 2.1E+02 0.007 24.4 9.6 107 580-704 4-124 (140)
103 3hdv_A Response regulator; PSI 34.8 2.1E+02 0.0073 24.3 11.9 108 579-704 7-125 (136)
104 2qsj_A DNA-binding response re 34.4 2E+02 0.0068 25.2 9.6 109 579-704 3-122 (154)
105 2qzj_A Two-component response 33.6 2.3E+02 0.0079 24.4 10.5 109 579-705 4-120 (136)
106 2e6c_A 5'-nucleotidase SURE; S 32.4 1.8E+02 0.0063 29.3 9.6 35 380-414 84-129 (244)
107 3lua_A Response regulator rece 32.0 1.4E+02 0.005 25.7 8.1 107 580-704 5-125 (140)
108 3ew7_A LMO0794 protein; Q8Y8U8 31.5 28 0.00094 33.4 3.3 19 294-316 15-33 (221)
109 3l4b_C TRKA K+ channel protien 31.0 1.2E+02 0.004 29.4 7.9 30 382-411 64-96 (218)
110 3cnb_A DNA-binding response re 30.7 2.5E+02 0.0086 23.9 11.6 109 579-705 8-129 (143)
111 1jwq_A N-acetylmuramoyl-L-alan 30.0 49 0.0017 31.8 4.7 28 284-316 26-54 (179)
112 3h2s_A Putative NADH-flavin re 29.8 31 0.001 33.3 3.3 19 294-316 15-33 (224)
113 3p0r_A Azoreductase; structura 29.6 47 0.0016 32.6 4.6 39 253-307 3-43 (211)
114 3dhn_A NAD-dependent epimerase 29.5 26 0.0009 33.9 2.7 20 294-317 19-38 (227)
115 3ph3_A Ribose-5-phosphate isom 29.1 35 0.0012 32.7 3.3 36 249-307 15-50 (169)
116 1l5x_A SurviVal protein E; str 28.8 2.4E+02 0.008 29.1 9.9 37 255-318 1-37 (280)
117 2rdm_A Response regulator rece 28.5 2.6E+02 0.009 23.4 11.7 106 579-704 5-121 (132)
118 2rjn_A Response regulator rece 28.1 3E+02 0.01 24.0 11.6 108 579-704 7-124 (154)
119 2fzv_A Putative arsenical resi 28.0 61 0.0021 33.5 5.3 38 252-307 56-93 (279)
120 3hdg_A Uncharacterized protein 27.8 2.8E+02 0.0096 23.5 9.9 108 579-704 7-123 (137)
121 1uan_A Hypothetical protein TT 27.6 2.4E+02 0.0081 27.8 9.5 17 298-316 24-40 (227)
122 1dbw_A Transcriptional regulat 27.6 2.7E+02 0.0092 23.3 11.6 108 579-704 3-119 (126)
123 3qay_A Endolysin; amidase A/B 27.6 85 0.0029 30.1 5.9 53 255-316 2-56 (180)
124 3kcn_A Adenylate cyclase homol 27.6 3.1E+02 0.011 23.9 14.1 106 580-704 5-121 (151)
125 3nhm_A Response regulator; pro 27.5 2.8E+02 0.0095 23.4 13.0 76 630-705 36-121 (133)
126 1p2f_A Response regulator; DRR 27.4 2.2E+02 0.0076 26.9 9.1 106 581-706 4-117 (220)
127 2x4g_A Nucleoside-diphosphate- 27.3 39 0.0013 34.9 3.8 20 294-317 28-47 (342)
128 3t6k_A Response regulator rece 26.8 3E+02 0.01 23.6 11.7 107 580-704 5-122 (136)
129 2r6j_A Eugenol synthase 1; phe 26.8 44 0.0015 34.3 4.0 20 294-317 26-45 (318)
130 2qxy_A Response regulator; reg 26.7 2.2E+02 0.0076 24.4 8.3 107 580-704 5-119 (142)
131 3eod_A Protein HNR; response r 26.6 2.9E+02 0.0098 23.2 10.8 108 579-704 7-124 (130)
132 1jbe_A Chemotaxis protein CHEY 26.6 2.8E+02 0.0096 23.1 12.4 108 580-704 5-123 (128)
133 3f6c_A Positive transcription 26.2 2.9E+02 0.01 23.2 10.3 107 580-704 2-118 (134)
134 1hdo_A Biliverdin IX beta redu 25.8 43 0.0015 31.6 3.4 19 294-316 18-36 (206)
135 3lte_A Response regulator; str 25.3 3E+02 0.01 23.1 10.7 108 579-704 6-123 (132)
136 3ikm_A DNA polymerase subunit 25.3 36 0.0012 41.5 3.2 78 134-219 6-107 (1172)
137 1p6q_A CHEY2; chemotaxis, sign 25.0 3E+02 0.01 23.0 9.2 108 580-704 7-125 (129)
138 3c24_A Putative oxidoreductase 24.6 42 0.0014 34.3 3.3 35 252-315 9-43 (286)
139 3vps_A TUNA, NAD-dependent epi 24.6 44 0.0015 34.0 3.5 38 252-318 5-42 (321)
140 3i6i_A Putative leucoanthocyan 24.5 39 0.0013 35.3 3.1 20 294-317 25-44 (346)
141 4egb_A DTDP-glucose 4,6-dehydr 24.5 2.9E+02 0.0098 28.2 9.9 14 294-307 39-52 (346)
142 3ruf_A WBGU; rossmann fold, UD 24.2 35 0.0012 35.6 2.6 48 241-317 11-59 (351)
143 3sc6_A DTDP-4-dehydrorhamnose 24.1 20 0.00068 36.3 0.7 34 253-315 4-37 (287)
144 3lkv_A Uncharacterized conserv 24.0 5.6E+02 0.019 25.7 13.7 113 563-690 126-243 (302)
145 3c1o_A Eugenol synthase; pheny 23.7 51 0.0017 33.8 3.8 20 294-317 19-38 (321)
146 3hv2_A Response regulator/HD d 23.7 3.7E+02 0.013 23.4 10.6 107 580-704 15-131 (153)
147 1kjn_A MTH0777; hypotethical p 23.5 1E+02 0.0036 28.8 5.3 36 253-307 5-40 (157)
148 3dqp_A Oxidoreductase YLBE; al 23.5 36 0.0012 32.9 2.4 20 294-317 15-34 (219)
149 3cz5_A Two-component response 23.0 3.5E+02 0.012 23.5 9.1 110 579-704 5-123 (153)
150 3r6d_A NAD-dependent epimerase 23.0 47 0.0016 32.0 3.2 19 294-316 20-39 (221)
151 2hqr_A Putative transcriptiona 22.6 2.8E+02 0.0095 26.2 8.8 93 602-705 13-114 (223)
152 2q62_A ARSH; alpha/beta, flavo 22.3 87 0.003 31.6 5.1 47 243-307 22-69 (247)
153 3s5p_A Ribose 5-phosphate isom 22.2 62 0.0021 30.8 3.6 33 252-307 19-51 (166)
154 3gl9_A Response regulator; bet 22.2 3.5E+02 0.012 22.6 12.0 106 581-704 4-120 (122)
155 2cp8_A NEXT to BRCA1 gene 1 pr 22.1 85 0.0029 24.2 3.7 20 195-214 2-21 (54)
156 1xv5_A AGT, DNA alpha-glucosyl 21.9 5.8E+02 0.02 25.1 17.3 164 550-734 199-391 (401)
157 3rqi_A Response regulator prot 21.8 2.9E+02 0.0098 25.3 8.5 108 579-704 7-123 (184)
158 3i42_A Response regulator rece 21.7 3.5E+02 0.012 22.5 11.3 106 580-703 4-119 (127)
159 2vvp_A Ribose-5-phosphate isom 21.4 58 0.002 30.9 3.3 30 255-307 4-33 (162)
160 3ic5_A Putative saccharopine d 21.3 55 0.0019 27.7 2.9 19 294-316 19-38 (118)
161 3rpe_A MDAB, modulator of drug 21.2 1.1E+02 0.0037 30.4 5.4 40 254-307 25-64 (218)
162 1rcu_A Conserved hypothetical 21.1 46 0.0016 32.6 2.6 69 631-702 109-191 (195)
163 1t2a_A GDP-mannose 4,6 dehydra 21.1 52 0.0018 34.6 3.3 20 294-317 39-58 (375)
164 3cu5_A Two component transcrip 21.0 4E+02 0.014 22.9 11.1 75 630-704 38-121 (141)
165 4h62_K Mediator of RNA polymer 21.0 68 0.0023 22.1 2.6 23 216-238 10-32 (40)
166 2l2q_A PTS system, cellobiose- 20.9 1.3E+02 0.0044 26.1 5.3 35 252-307 2-36 (109)
167 1kjq_A GART 2, phosphoribosylg 20.1 4.7E+02 0.016 27.3 10.7 18 294-315 25-42 (391)
No 1
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=100.00 E-value=4.5e-174 Score=1555.10 Aligned_cols=778 Identities=84% Similarity=1.367 Sum_probs=751.7
Q ss_pred hHHHHHHHhcCCcccchhHHHHHHHhhhhhhhccccCCcHHHHHhhcceeeEcCCeEEEEEcCCCceEEEEEEecCccee
Q 003962 6 CFLCCRIEGKGKGILQNHQLIAEFESISEENRKHLTEGAFGEVLRATQEAIVLPPWVALAVRPRPGVWEYIRVNVHALVV 85 (783)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (783)
..|+++|+++||++|++|||+++|++++++++.++.+|+||++|++||||||.|||||||||||||+|||||||++||+|
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 109 (816)
T 3s28_A 30 LALLSRVEAKGKGILQQNQIIAEFEALPEQTRKKLEGGPFFDLLKSTQEAIVLPPWVALAVRPRPGVWEYLRVNLHALVV 109 (816)
T ss_dssp HHHHHHHHHHHTCSEEEEHHHHHHTTTTTSCGGGCCCSTHHHHHHTEEEEEECSSEEEEEEEEETTEEEEEEEETTSSCE
T ss_pred HHHHHHHHhcCCCcccHHHHHHHHHHHHHhhhcccccCcHHHHHHhhhheeecCCeEEEEEcCCCcceEEEEEEhhhCce
Confidence 56799999999999999999999999998888899999999999999999999999999999999999999999999999
Q ss_pred eecCHHHHhhhcccccCCcCCCCceeeeeccccccCCCCCCCCCCCCchhhhhhHhhhhhhcCCCCCchhHHHHHhhccc
Q 003962 86 EELLVAEYLHFKEELVDGGSNGNFVLELDFEPFNASFPRPTLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEFLRVHCH 165 (783)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (783)
|+|||+|||+|||+|||++.+++++||+||+|||++||++++|+||||||+|||||||||||+|++++++||+||+.|+|
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (816)
T 3s28_A 110 EELQPAEFLHFKEELVDGVKNGNFTLELDFEPFNASIPRPTLHKYIGNGVDFLNRHLSAKLFHDKESLLPLLKFLRLHSH 189 (816)
T ss_dssp EEECHHHHHHHHHHHHHSSCCCTTSCEEECGGGGTTSCCCCCGGGTTBHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCEE
T ss_pred eeecHHHHHHhHHHhcCCCCCCCCceEEeccccccCCCCCCCcccccCcHHHHHHHHHhhhcCChhhhHHHHHHHHHccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeecccCCCChHHHHHHHHHHHHHhhcCCCCCCchHHHHHhhhcCcccCCCCcHHHHHHHHHHHHHhhcCCChhcHH
Q 003962 166 KGKNMMLNDRIQNLNSLQHVLRKAEEYLTTVVPETPFSELALRFQEIGLERGWGDTAERALEMIQLLLDLLEAPDPCTLE 245 (783)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~~~~ 245 (783)
+|++|||||||+|+++||++|++|++||+++|+||||++|+++||+|||||||||||+||+|||++|+++|++|||++||
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 269 (816)
T 3s28_A 190 QGKNLMLSEKIQNLNTLQHTLRKAEEYLAELKSETLYEEFEAKFEEIGLERGWGDNAERVLDMIRLLLDLLEAPDPCTLE 269 (816)
T ss_dssp TTEEBSBCTTCCSHHHHHHHHHHHHHHHHHSCTTCBHHHHHHHHHHTTBCBCSCSBHHHHHHHHHHHHHHHHSCCHHHHH
T ss_pred CCeeeeccCCcCCHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCCCcCCcHHHHHHHHHHHHHHhcCCCcccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCcceEEEEcccccccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHCCCceeeceeEEeCCCCCCCCCcc
Q 003962 246 TFLGRIPMVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTC 325 (783)
Q Consensus 246 ~f~~~~pm~~rI~iis~h~~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~GheV~~~i~VvT~~~~~~~g~~~ 325 (783)
+|++|+||+|||+|+|+||||+|.+++|+||||||++||+|||||||++|+++|+++||+|+|+|+|+|+.++++.|+.|
T Consensus 270 ~~~~~~~~~~~i~~is~hg~~~~~~~lG~~dtGGq~vyV~e~~~al~~ela~~L~~~G~~V~~~V~v~Tr~~~~~~g~~y 349 (816)
T 3s28_A 270 TFLGRVPMVFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRALEIEMLQRIKQQGLNIKPRILILTRLLPDAVGTTC 349 (816)
T ss_dssp HHHHHSCCCCEEEEECCSSCCCSSSCTTSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECCTTCTTSST
T ss_pred HHhccCCceeEEEEEcCCcccCccccCCCCCCCCceeeHHHHHHHHHHHHHHHHHHCCCccceeeEEEeCCCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeecCccCeEEEEeccCCCccccccccccccchhhHHHHHHHHHHHHHHHcCCCceEEEEcCCCchHHHHHHHHhc
Q 003962 326 GQRLEKVYGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKL 405 (783)
Q Consensus 326 ~~~~e~i~~~~~v~Ilrvp~~~~~~~~~~~isr~~i~~~l~~f~~~~~~~l~~~l~~~pDIIh~h~~~~~lva~llar~l 405 (783)
.++.+.+.++++++|+|+|+++.++++++|+++..+|+|+..|+..++..+....+++|||||+|++.+++++.++++++
T Consensus 350 ~~~~e~i~~~~gv~I~RvP~~~~~g~l~~~l~k~~L~~~L~~F~~~~l~~il~~~~~~PDVIHsH~~~sglva~llar~~ 429 (816)
T 3s28_A 350 GERLERVYDSEYCDILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELSKELNGKPDLIIGNYSDGNLVASLLAHKL 429 (816)
T ss_dssp TSSEEECTTCSSEEEEEECEEETTEEECSCCCTTTCGGGHHHHHHHHHHHHHHHCSSCCSEEEEEHHHHHHHHHHHHHHH
T ss_pred CCcceeecCcCCeEEEEecCCCccccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCchHHHHHHHHHHHc
Confidence 99999999999999999999998888899999999999999999888888888777799999999999999999999999
Q ss_pred CCcEEEEecCCCccCCCCCchhhhhccccccccchhhHhHHhhhcCCEEEcCCHHHHhhcccccccccccccccccccee
Q 003962 406 GVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYR 485 (783)
Q Consensus 406 gvp~v~t~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~~a~~~AD~IIt~S~~~~~~~~~~v~qy~~~~~f~~p~l~~ 485 (783)
|+|+|+|.|+++..++..++.+|+.....|++.+++.++..+++.||.|||+|+++++.+.+.+++|.++.+|++|++|+
T Consensus 430 gvP~V~T~Hsl~~~k~~~~~~~~~~~~~~y~~~~r~~aE~~~l~~AD~VIa~S~~~~~~l~~~~~~y~~~~~~~~p~Lyr 509 (816)
T 3s28_A 430 GVTQCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITSTFQEIAGSKETVGQYESHTAFTLPGLYR 509 (816)
T ss_dssp TCCEEEECSCCHHHHSTTTTTTHHHHHHHHCHHHHHHHHHHHHHHSSEEEESCHHHHHCCSSSCCTTGGGSSEEETTTEE
T ss_pred CCCEEEEEecccccccccccchhhhHHHHHHHHHHHHHHHHHHHhCCEEEECCHHHHHHHHHHHHHhhhhhccccchhhh
Confidence 99999999999888888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCCCcEEEecCCccCCCCCCCchHHHhhccCchhhHHhhcChhhhhhhhccccCCCCcEEEEEecccCCCCHHH
Q 003962 486 VVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLKSFHPEIEELLYSDVENKEHLCVLKDRNKPILFTMARLDRVKNLTG 565 (783)
Q Consensus 486 v~~gi~~~~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~~~~~l~~~~~~~~~~gll~~~~k~iIl~vGRL~~~Kgl~~ 565 (783)
+++|++.+++|+.|||||+|.+.|.|......+....++.++..++++.+.++.+|++.++++++|+|+||+++.||++.
T Consensus 510 ~~~gI~~~~~ki~VIpnGVD~~~F~P~~~~~~Rl~~~~~~i~~~l~~p~~~r~~lg~l~~~~~~vIl~vGRl~~~KGid~ 589 (816)
T 3s28_A 510 VVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENKEHLCVLKDKKKPILFTMARLDRVKNLSG 589 (816)
T ss_dssp EEESCCTTCTTEEECCCCCCTTTSCCTTCTTTCCGGGHHHHHHHHHCSCCBTTEESCBSCTTSCEEEEECCCCTTTTHHH
T ss_pred cccccccCCCCEEEECCCcCHHHcCccchhhhhhhhccccccccccchhhHHHHhcccCCCCCeEEEEEccCcccCCHHH
Confidence 99999999999999999999999999887777777788889999999999999999988889999999999999999999
Q ss_pred HHHHHHHhHccCCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHccCcEEE
Q 003962 566 LVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFV 645 (783)
Q Consensus 566 LieA~~~l~~~~~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~aadvfV 645 (783)
+++|++++.+.+++++|+|+|+|++..+.+.++.++.++++++++++++.++|+|+|++.+.++.+++++++++++|+||
T Consensus 590 LIeA~~~L~~~~~~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~~V~flG~~~~~v~~~eL~~~~~~aaDvfV 669 (816)
T 3s28_A 590 LVEWYGKNTRLRELANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICDTKGAFV 669 (816)
T ss_dssp HHHHHHHCHHHHHHCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBBBEEEECCCCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHhhCCCeEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCCcEEEccCccccCCHHHHHHHHHhcCeEEE
Confidence 99999999888889999999999865566788888999999999999999999999988888888999999997689999
Q ss_pred eCCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCceEEEECCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Q 003962 646 QPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRI 725 (783)
Q Consensus 646 ~PS~~E~fGltvlEAMa~GlPVVat~~GG~~EiI~dg~~G~li~p~d~e~lAeaI~~~l~~l~~dp~~~~~ms~~a~~~v 725 (783)
+||.+|+||++++||||||+|||+|+.||+.|+|.++.+|++++|+|++++|++|.++++++..|++.+++|+++|++++
T Consensus 670 ~PS~~EgfglvllEAMA~G~PVIasd~GG~~EiV~dg~~Gllv~p~D~e~LA~aI~~lL~~Ll~d~~~~~~m~~~ar~~a 749 (816)
T 3s28_A 670 QPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAADTLADFFTKCKEDPSHWDEISKGGLQRI 749 (816)
T ss_dssp ECCSCBSSCHHHHHHHHTTCCEEEESSBTHHHHCCBTTTBEEECTTSHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHH
T ss_pred ECCCccCccHHHHHHHHcCCCEEEeCCCChHHHHccCCcEEEeCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888899999999999999999
Q ss_pred HHhCCHHHHHHHHHHHHHHhcchhhhcchhHHHhhhHHHHHHHhhcccccccCCccCC
Q 003962 726 EEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 783 (783)
Q Consensus 726 ~~~ysw~~~a~~ll~ly~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (783)
.++|||+.++++++++|+.++||+++++++|++++||+||||+|+|||||++||+++|
T Consensus 750 ~~~fSwe~~a~~ll~lY~~~g~wk~vs~~~r~~~~ryle~~~~l~~~~~~~~~~~~~~ 807 (816)
T 3s28_A 750 EEKYTWQIYSQRLLTLTGVYGFWKHVSNLDRLEARRYLEMFYALKYRPLAQAVPLAQD 807 (816)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHTHHHHHHHSCCCCC
T ss_pred HHhCCHHHHHHHHHHHHHHHhHhhhcchhhhHHHHHHHHHHHHHhhhhHHhcCCCccc
Confidence 9999999999999999999999999999999999999999999999999999999976
No 2
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=100.00 E-value=1.7e-45 Score=421.49 Aligned_cols=434 Identities=29% Similarity=0.470 Sum_probs=314.9
Q ss_pred CCCcceEEEEcccccccccC--CCCCCCCCcchhhHHHHHHHHHHHHHHHHHHCCCceeeceeEEeCCCCCCCCCcccce
Q 003962 251 IPMVFNVVILTPHGYFAQDD--VLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQR 328 (783)
Q Consensus 251 ~pm~~rI~iis~h~~~~~~~--~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~GheV~~~i~VvT~~~~~~~g~~~~~~ 328 (783)
++|.|||++++++++|.+.. +.+.|..||.+.++. +|++.|+++||+|+ |+|..........+...
T Consensus 4 m~~~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~~~~~~~~~ 71 (499)
T 2r60_A 4 MTRIKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVK--------EVSLALAEMGVQVD----IITRRIKDENWPEFSGE 71 (499)
T ss_dssp ---CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHH--------HHHHHHHHTTCEEE----EEEECCCBTTBGGGCCS
T ss_pred ccccceEEEEecCCCccccccccCCCCCCCCeeehHH--------HHHHHHHhcCCeEE----EEeCCCCcccccchhhh
Confidence 45569999999999875432 245678899999999 66667789999999 88875432111122222
Q ss_pred eeeecCccCeEEEEeccCCCccccccccccccchhhHHHHHHHHHHHHHHHcCCCceEEEEcCCCchHHHHHHHHhcCCc
Q 003962 329 LEKVYGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVT 408 (783)
Q Consensus 329 ~e~i~~~~~v~Ilrvp~~~~~~~~~~~isr~~i~~~l~~f~~~~~~~l~~~l~~~pDIIh~h~~~~~lva~llar~lgvp 408 (783)
.+.+....+++++++|..... +..+...|.++..+...+.+.+.+. ..+|||||+|.+..++.+.++++..++|
T Consensus 72 ~~~~~~~~gv~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~Divh~~~~~~~~~~~~~~~~~~~p 145 (499)
T 2r60_A 72 IDYYQETNKVRIVRIPFGGDK-----FLPKEELWPYLHEYVNKIINFYREE-GKFPQVVTTHYGDGGLAGVLLKNIKGLP 145 (499)
T ss_dssp EEECTTCSSEEEEEECCSCSS-----CCCGGGCGGGHHHHHHHHHHHHHHH-TCCCSEEEEEHHHHHHHHHHHHHHHCCC
T ss_pred HHhccCCCCeEEEEecCCCcC-----CcCHHHHHHHHHHHHHHHHHHHHhc-CCCCCEEEEcCCcchHHHHHHHHhcCCc
Confidence 333322357899999875431 1223345666555554444444332 2479999999876677888888889999
Q ss_pred EEEEecCCCccCCC---CCchhhhhccccccccchhhHhHHhhhcCCEEEcCCHHHHhhcccccccccccccccccccee
Q 003962 409 QCTIAHALEKTKYP---DSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYR 485 (783)
Q Consensus 409 ~v~t~H~l~~~~~~---~s~~~~~~~~~~y~f~~~~~~e~~a~~~AD~IIt~S~~~~~~~~~~v~qy~~~~~f~~p~l~~ 485 (783)
+|++.|+....... ........+...+++......++..++.+|.||++|+..++.+.+.. .|
T Consensus 146 ~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~-~~------------- 211 (499)
T 2r60_A 146 FTFTGHSLGAQKMEKLNVNTSNFKEMDERFKFHRRIIAERLTMSYADKIIVSTSQERFGQYSHD-LY------------- 211 (499)
T ss_dssp EEEECSSCHHHHHHTTCCCSTTSHHHHHHHCHHHHHHHHHHHHHHCSEEEESSHHHHHHTTTSG-GG-------------
T ss_pred EEEEccCcccccchhhccCCCCcchhhhhHHHHHHHHHHHHHHhcCCEEEECCHHHHHHHHhhh-cc-------------
Confidence 99999986432110 00000011111122222233466788999999999998776433220 01
Q ss_pred eecc-C-CC-CCCcEEEecCCccCCCCCCCchHHHhhccCchhhHHhhcChhhhhhhhc-----cccCCCCcEEEEEecc
Q 003962 486 VVHG-I-DV-FDPKFNIVSPGADMSIYFPYTEEKRRLKSFHPEIEELLYSDVENKEHLC-----VLKDRNKPILFTMARL 557 (783)
Q Consensus 486 v~~g-i-~~-~~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~~~~~l~~~~~~~~~~g-----ll~~~~k~iIl~vGRL 557 (783)
| + +. ...++.|||||+|.+.|.|......+ ...++.+| + ++++++|+|+||+
T Consensus 212 ---g~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~---------------~~~r~~~~~~~~~~--~~~~~~i~~vGrl 271 (499)
T 2r60_A 212 ---RGAVNVEDDDKFSVIPPGVNTRVFDGEYGDKIK---------------AKITKYLERDLGSE--RMELPAIIASSRL 271 (499)
T ss_dssp ---TTTCCTTCGGGEEECCCCBCTTTSSSCCCHHHH---------------HHHHHHHHHHSCGG--GTTSCEEEECSCC
T ss_pred ---cccccccCCCCeEEECCCcChhhcCccchhhhH---------------HHHHHHhccccccc--CCCCcEEEEeecC
Confidence 1 2 00 15689999999999988776432111 12345566 5 5678899999999
Q ss_pred cCCCCHHHHHHHHHHhHccCCC-eEEEEEeCCCCC----CCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHH
Q 003962 558 DRVKNLTGLVEWYGKNAKLREL-VNLVVVGGDRRK----ESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGE 632 (783)
Q Consensus 558 ~~~Kgl~~LieA~~~l~~~~~~-~~LvIVG~g~~~----~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~e 632 (783)
.+.||++.+++|+.++.+..++ +.|+|+|+++.. .....++.++.++++++++++++.++|.|+| .++.++
T Consensus 272 ~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G----~v~~~~ 347 (499)
T 2r60_A 272 DQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFP----LNSQQE 347 (499)
T ss_dssp CGGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEE----CCSHHH
T ss_pred ccccCHHHHHHHHHHHHHhCCCceEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCCCceEEECC----CCCHHH
Confidence 9999999999999998765454 589999983211 0001233345788999999999999999999 777899
Q ss_pred HHHHHHccC----cEEEeCCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCceEEEECCCCHHHHHHHHHHHHHHhh
Q 003962 633 LYRYICDTK----GAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCK 708 (783)
Q Consensus 633 l~~~ia~aa----dvfV~PS~~E~fGltvlEAMa~GlPVVat~~GG~~EiI~dg~~G~li~p~d~e~lAeaI~~~l~~l~ 708 (783)
+..+++. + |++|+||.+|+||++++|||+||+|||+|+.||..|++.++.+|++++|+|+++++++|.+++
T Consensus 348 ~~~~~~~-a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll---- 422 (499)
T 2r60_A 348 LAGCYAY-LASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNGGPAEILDGGKYGVLVDPEDPEDIARGLLKAF---- 422 (499)
T ss_dssp HHHHHHH-HHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEEESSBHHHHHTGGGTSSEEECTTCHHHHHHHHHHHH----
T ss_pred HHHHHHh-cCcCCCEEEECcccCCCCcHHHHHHHcCCCEEEecCCCHHHHhcCCceEEEeCCCCHHHHHHHHHHHH----
Confidence 9999996 9 999999999999999999999999999999999999999999999999999999999997666
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 003962 709 ADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVY 745 (783)
Q Consensus 709 ~dp~~~~~ms~~a~~~v~~~ysw~~~a~~ll~ly~~~ 745 (783)
+|++.+++|++++++++.++|||+.++++++++|+..
T Consensus 423 ~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~~ 459 (499)
T 2r60_A 423 ESEETWSAYQEKGKQRVEERYTWQETARGYLEVIQEI 459 (499)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSBHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 8999999999999999988899999999999998753
No 3
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=100.00 E-value=4.5e-43 Score=390.84 Aligned_cols=400 Identities=16% Similarity=0.160 Sum_probs=298.4
Q ss_pred cceEEEEcccccccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHCCCceeeceeEEeCCCCCCCCCc---------
Q 003962 254 VFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTT--------- 324 (783)
Q Consensus 254 ~~rI~iis~h~~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~GheV~~~i~VvT~~~~~~~g~~--------- 324 (783)
.|||++++++.+| +..||.+.++. +|+++|+++||+|+ |+|...+......
T Consensus 2 ~MkIl~v~~~~~p--------~~~gG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~~~~~~~~~~~~~~ 61 (439)
T 3fro_A 2 HMKVLLLGFEFLP--------VKVGGLAEALT--------AISEALASLGHEVL----VFTPSHGRFQGEEIGKIRVFGE 61 (439)
T ss_dssp CCEEEEECSCCTT--------SCSSSHHHHHH--------HHHHHHHHTTCEEE----EEEECTTCSCCEEEEEEEETTE
T ss_pred ceEEEEEecccCC--------cccCCHHHHHH--------HHHHHHHHCCCeEE----EEecCCCCchhhhhccccccCc
Confidence 5899999988763 36799999999 66777899999999 9997654432110
Q ss_pred -ccceeeeecCccCeEEEEeccCCCccccccccccccchh-h----H---HHHHHHHHHHHHHHc--CCCceEEEEcCCC
Q 003962 325 -CGQRLEKVYGTKYSDILRVPFRTEKGVVRKWISRFEVWP-Y----L---ETYTEDVAVEIAKEL--QGKPDLIIGNYSD 393 (783)
Q Consensus 325 -~~~~~e~i~~~~~v~Ilrvp~~~~~~~~~~~isr~~i~~-~----l---~~f~~~~~~~l~~~l--~~~pDIIh~h~~~ 393 (783)
...... .....++.++++|. .. ..+..++. + . ..|.......+...+ ..+|||||+|++.
T Consensus 62 ~~~~~~~-~~~~~gv~v~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~ 132 (439)
T 3fro_A 62 EVQVKVS-YEERGNLRIYRIGG-GL-------LDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWH 132 (439)
T ss_dssp EEEEEEE-EEEETTEEEEEEES-GG-------GGCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSEEEEESGG
T ss_pred ccceeee-eccCCCceEEEecc-hh-------ccccccccCCcchhhhhhHHHHHHHHHHHHHHhccCCCCeEEEecchh
Confidence 000000 00235788888876 21 11112222 1 1 123333333333321 5689999999988
Q ss_pred chHHHHHHHHhcCCcEEEEecCCCccCCCCCchhhhhccccccccchhhHhHHhhhcCCEEEcCCHHHHhhccccccccc
Q 003962 394 GNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYE 473 (783)
Q Consensus 394 ~~lva~llar~lgvp~v~t~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~~a~~~AD~IIt~S~~~~~~~~~~v~qy~ 473 (783)
.++.+.++++..++|+|++.|+.....++........+.. .........++..++.+|.|+++|+...+. ..+.
T Consensus 133 ~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~---~~~~-- 206 (439)
T 3fro_A 133 TVFAGALIKKYFKIPAVFTIHRLNKSKLPAFYFHEAGLSE-LAPYPDIDPEHTGGYIADIVTTVSRGYLID---EWGF-- 206 (439)
T ss_dssp GHHHHHHHHHHHCCCEEEEESCCCCCCEEHHHHHHTTCGG-GCCSSEECHHHHHHHHCSEEEESCHHHHHH---THHH--
T ss_pred hhhhHHHHhhccCCCEEEEecccccccCchHHhCcccccc-ccccceeeHhhhhhhhccEEEecCHHHHHH---Hhhh--
Confidence 8888888888899999999999764332211111011110 001122245667899999999999987663 1110
Q ss_pred cccccccccceeeeccCCCCCCcEEEecCCccCCCCCCCc----hHHHhhccCchhhHHhhcChhhhhhhhccccCCCCc
Q 003962 474 SHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYT----EEKRRLKSFHPEIEELLYSDVENKEHLCVLKDRNKP 549 (783)
Q Consensus 474 ~~~~f~~p~l~~v~~gi~~~~~k~~VIpnGvD~~~f~p~~----~~~~r~~~~~~~~~~~l~~~~~~~~~~gll~~~~k~ 549 (783)
.+....++.+||||+|.+.|.|.. .... ....++.+|+ +++ +
T Consensus 207 ----------------~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~---------------~~~~~~~~~~--~~~-~ 252 (439)
T 3fro_A 207 ----------------FRNFEGKITYVFNGIDCSFWNESYLTGSRDER---------------KKSLLSKFGM--DEG-V 252 (439)
T ss_dssp ----------------HGGGTTSEEECCCCCCTTTSCGGGSCSCHHHH---------------HHHHHHHHTC--CSC-E
T ss_pred ----------------hhhcCCceeecCCCCCchhcCcccccchhhhh---------------HHHHHHHcCC--CCC-c
Confidence 012277999999999999987752 1111 1244567787 555 9
Q ss_pred EEEEEeccc-CCCCHHHHHHHHHHhHccC--CCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCC
Q 003962 550 ILFTMARLD-RVKNLTGLVEWYGKNAKLR--ELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMN 626 (783)
Q Consensus 550 iIl~vGRL~-~~Kgl~~LieA~~~l~~~~--~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~ 626 (783)
+|+|+||+. +.||++.+++|+.++.+.. ++++|+|+|+|+. .+.+.+++++++++ +.+.|.|
T Consensus 253 ~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~---------~~~~~l~~~~~~~~--~~~~~~g---- 317 (439)
T 3fro_A 253 TFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDP---------ELEGWARSLEEKHG--NVKVITE---- 317 (439)
T ss_dssp EEEEECCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCCCH---------HHHHHHHHHHHHCT--TEEEECS----
T ss_pred EEEEEcccccccccHHHHHHHHHHHHhcccCCCeEEEEEcCCCh---------hHHHHHHHHHhhcC--CEEEEcC----
Confidence 999999999 9999999999999998876 8999999999964 34578888999988 7788998
Q ss_pred cCChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCceEEEECCCCHHHHHHHHHHHHHH
Q 003962 627 RVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEK 706 (783)
Q Consensus 627 ~~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~GlPVVat~~GG~~EiI~dg~~G~li~p~d~e~lAeaI~~~l~~ 706 (783)
.++.+++..+++. +|++|+||.+|+||++++|||+||+|||+|+.||..|++.++ +|++++|+|+++++++|.+++
T Consensus 318 ~~~~~~~~~~~~~-adv~v~ps~~e~~~~~~~EAma~G~Pvi~s~~~~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll-- 393 (439)
T 3fro_A 318 MLSREFVRELYGS-VDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITNE-TGILVKAGDPGELANAILKAL-- 393 (439)
T ss_dssp CCCHHHHHHHHTT-CSEEEECBSCCSSCHHHHHHHHTTCEEEEESSTHHHHHCCTT-TCEEECTTCHHHHHHHHHHHH--
T ss_pred CCCHHHHHHHHHH-CCEEEeCCCCCCccHHHHHHHHCCCCeEEcCCCCcceeEEcC-ceEEeCCCCHHHHHHHHHHHH--
Confidence 7888999999995 999999999999999999999999999999999999999888 999999999999999997776
Q ss_pred hhC-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 003962 707 CKA-DPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGV 744 (783)
Q Consensus 707 l~~-dp~~~~~ms~~a~~~v~~~ysw~~~a~~ll~ly~~ 744 (783)
+ |++.+++|++++++.+ ++|||+.++++++++|+.
T Consensus 394 --~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~ 429 (439)
T 3fro_A 394 --ELSRSDLSKFRENCKKRA-MSFSWEKSAERYVKAYTG 429 (439)
T ss_dssp --HHTTTTTHHHHHHHHHHH-HTSCHHHHHHHHHHHHHT
T ss_pred --hcCHHHHHHHHHHHHHHH-hhCcHHHHHHHHHHHHHH
Confidence 6 8999999999999999 789999999999999864
No 4
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=100.00 E-value=5.4e-43 Score=392.33 Aligned_cols=405 Identities=19% Similarity=0.280 Sum_probs=295.2
Q ss_pred CCcceEEEEcccccccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHCCCceeeceeEEeCCCCCCCCCcccceeee
Q 003962 252 PMVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEK 331 (783)
Q Consensus 252 pm~~rI~iis~h~~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~GheV~~~i~VvT~~~~~~~g~~~~~~~e~ 331 (783)
..+|||++++.+++|. ...|.+..||.+.++. +|++.|+++||+|+ |+|....... .....
T Consensus 18 ~~mmkIl~i~~~~~p~--~~~~~~~~GG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~~-----~~~~~ 78 (438)
T 3c48_A 18 GSHMRVAMISMHTSPL--QQPGTGDSGGMNVYIL--------STATELAKQGIEVD----IYTRATRPSQ-----GEIVR 78 (438)
T ss_dssp -CCCEEEEECTTSCTT--CC-------CHHHHHH--------HHHHHHHHTTCEEE----EEEECCCGGG-----CSEEE
T ss_pred cchheeeeEEeecccc--ccCCCCCCCCHHHHHH--------HHHHHHHhcCCEEE----EEecCCCCCC-----ccccc
Confidence 3468999999887742 2234457899999999 66677799999999 8886532111 01111
Q ss_pred ecCccCeEEEEeccCCCccccccccccccchhhHHHHHHHHHHHHHHHcCCCceEEEEcCCCchHHHHHHHHhcCCcEEE
Q 003962 332 VYGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCT 411 (783)
Q Consensus 332 i~~~~~v~Ilrvp~~~~~~~~~~~isr~~i~~~l~~f~~~~~~~l~~~l~~~pDIIh~h~~~~~lva~llar~lgvp~v~ 411 (783)
. ..++.+++++.....+ .++..++.++..|.....+...+.. .+|||||+|.+..++.+.++++..++|+|+
T Consensus 79 ~--~~~v~v~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Div~~~~~~~~~~~~~~~~~~~~p~v~ 150 (438)
T 3c48_A 79 V--AENLRVINIAAGPYEG-----LSKEELPTQLAAFTGGMLSFTRREK-VTYDLIHSHYWLSGQVGWLLRDLWRIPLIH 150 (438)
T ss_dssp E--ETTEEEEEECCSCSSS-----CCGGGGGGGHHHHHHHHHHHHHHHT-CCCSEEEEEHHHHHHHHHHHHHHHTCCEEE
T ss_pred c--cCCeEEEEecCCCccc-----cchhHHHHHHHHHHHHHHHHHHhcc-CCCCEEEeCCccHHHHHHHHHHHcCCCEEE
Confidence 1 2468888888754321 1223344455555444444323322 249999999876677777888888999999
Q ss_pred EecCCCccCCCCCchhhhhccccccccchhhHhHHhhhcCCEEEcCCHHHHhhccccccccccccccccccceeeeccCC
Q 003962 412 IAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGID 491 (783)
Q Consensus 412 t~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~~a~~~AD~IIt~S~~~~~~~~~~v~qy~~~~~f~~p~l~~v~~gi~ 491 (783)
+.|+......... .... ..........+...++.+|.|+++|....+.+.+. .|++
T Consensus 151 ~~h~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-------------------~g~~ 206 (438)
T 3c48_A 151 TAHTLAAVKNSYR----DDSD-TPESEARRICEQQLVDNADVLAVNTQEEMQDLMHH-------------------YDAD 206 (438)
T ss_dssp ECSSCHHHHSCC--------C-CHHHHHHHHHHHHHHHHCSEEEESSHHHHHHHHHH-------------------HCCC
T ss_pred EecCCcccccccc----cccC-CcchHHHHHHHHHHHhcCCEEEEcCHHHHHHHHHH-------------------hCCC
Confidence 9998643221100 0000 00000112235667899999999998877643321 1333
Q ss_pred CCCCcEEEecCCccCCCCCCCchHHHhhccCchhhHHhhcChhhhhhhhccccCCCCcEEEEEecccCCCCHHHHHHHHH
Q 003962 492 VFDPKFNIVSPGADMSIYFPYTEEKRRLKSFHPEIEELLYSDVENKEHLCVLKDRNKPILFTMARLDRVKNLTGLVEWYG 571 (783)
Q Consensus 492 ~~~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~~~~~l~~~~~~~~~~gll~~~~k~iIl~vGRL~~~Kgl~~LieA~~ 571 (783)
..++.+||||+|.+.|.+...... ...++.+|+ ++++++|+++||+.+.||++.+++|+.
T Consensus 207 --~~k~~vi~ngvd~~~~~~~~~~~~----------------~~~r~~~~~--~~~~~~i~~~G~~~~~Kg~~~li~a~~ 266 (438)
T 3c48_A 207 --PDRISVVSPGADVELYSPGNDRAT----------------ERSRRELGI--PLHTKVVAFVGRLQPFKGPQVLIKAVA 266 (438)
T ss_dssp --GGGEEECCCCCCTTTSCCC----C----------------HHHHHHTTC--CSSSEEEEEESCBSGGGCHHHHHHHHH
T ss_pred --hhheEEecCCccccccCCcccchh----------------hhhHHhcCC--CCCCcEEEEEeeecccCCHHHHHHHHH
Confidence 678999999999998876533210 113455676 667889999999999999999999999
Q ss_pred HhHccCC--CeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHccCcEEEeCCC
Q 003962 572 KNAKLRE--LVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPAL 649 (783)
Q Consensus 572 ~l~~~~~--~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~aadvfV~PS~ 649 (783)
++.+..| +++|+|+|+.... ..+.+.++++++++++.++|.|+| .++.+++..+++. +|++|+||.
T Consensus 267 ~l~~~~p~~~~~l~i~G~~~~~-------g~~~~~l~~~~~~~~l~~~v~~~g----~~~~~~~~~~~~~-adv~v~ps~ 334 (438)
T 3c48_A 267 ALFDRDPDRNLRVIICGGPSGP-------NATPDTYRHMAEELGVEKRIRFLD----PRPPSELVAVYRA-ADIVAVPSF 334 (438)
T ss_dssp HHHHHCTTCSEEEEEECCBC-------------CHHHHHHHHTTCTTTEEEEC----CCCHHHHHHHHHH-CSEEEECCS
T ss_pred HHHhhCCCcceEEEEEeCCCCC-------CcHHHHHHHHHHHcCCCCcEEEcC----CCChHHHHHHHHh-CCEEEECcc
Confidence 9988876 8999999982110 022467888999999999999999 7778899999995 999999999
Q ss_pred CCCCcHHHHHHHHcCCcEEEcCccccccccccCceEEEECCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhC
Q 003962 650 YEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKY 729 (783)
Q Consensus 650 ~E~fGltvlEAMa~GlPVVat~~GG~~EiI~dg~~G~li~p~d~e~lAeaI~~~l~~l~~dp~~~~~ms~~a~~~v~~~y 729 (783)
+|+||++++|||+||+|||+|+.||..|++.++.+|++++++|+++++++|.+++ +|++.+++|++++++.+.+ |
T Consensus 335 ~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~----~~~~~~~~~~~~~~~~~~~-~ 409 (438)
T 3c48_A 335 NESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLL----DDDETRIRMGEDAVEHART-F 409 (438)
T ss_dssp CCSSCHHHHHHHHTTCCEEEESCTTHHHHSCBTTTEEEESSCCHHHHHHHHHHHH----HCHHHHHHHHHHHHHHHHH-H
T ss_pred ccCCchHHHHHHHcCCCEEecCCCChhHHhhCCCcEEECCCCCHHHHHHHHHHHH----cCHHHHHHHHHHHHHHHHh-C
Confidence 9999999999999999999999999999999999999999999999999997766 7999999999999999977 9
Q ss_pred CHHHHHHHHHHHHHH
Q 003962 730 TWKIYSQRLLTLTGV 744 (783)
Q Consensus 730 sw~~~a~~ll~ly~~ 744 (783)
||+.++++++++|+.
T Consensus 410 s~~~~~~~~~~~~~~ 424 (438)
T 3c48_A 410 SWAATAAQLSSLYND 424 (438)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999999864
No 5
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=100.00 E-value=2.6e-42 Score=400.18 Aligned_cols=439 Identities=15% Similarity=0.159 Sum_probs=291.4
Q ss_pred cceEEEEcccccccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHCCCceeeceeEEeCCCCCCCCCcccceeeeec
Q 003962 254 VFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVY 333 (783)
Q Consensus 254 ~~rI~iis~h~~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~GheV~~~i~VvT~~~~~~~g~~~~~~~e~i~ 333 (783)
.|||+++|.-.+|- ..|||...++. .|.++|+++||+|+ |+++.++.-...........+.
T Consensus 9 ~MkIl~vs~E~~P~-------~K~GGLadvv~--------~L~~aL~~~G~~V~----Vi~P~Y~~~~~~~~~~~~~~~~ 69 (536)
T 3vue_A 9 HMNVVFVGAEMAPW-------SKTGGLGDVLG--------GLPPAMAANGHRVM----VISPRYDQYKDAWDTSVVAEIK 69 (536)
T ss_dssp CCEEEEECSCBTTT-------BCSSHHHHHHH--------HHHHHHHTTTCEEE----EEEECCSCCTTCEEEEEEEEEE
T ss_pred CcEEEEEEEeccch-------hccCcHHHHHH--------HHHHHHHHcCCeEE----EEecCchhhhhhcccceEEEEE
Confidence 59999999876642 36899999888 56667799999999 9997765432110000000000
Q ss_pred ---CccCeEEEEeccCCCc------c-cccc-c------ccc-c---cchhhHHHH--HHHHHHHHHHHcC---------
Q 003962 334 ---GTKYSDILRVPFRTEK------G-VVRK-W------ISR-F---EVWPYLETY--TEDVAVEIAKELQ--------- 381 (783)
Q Consensus 334 ---~~~~v~Ilrvp~~~~~------~-~~~~-~------isr-~---~i~~~l~~f--~~~~~~~l~~~l~--------- 381 (783)
....+++.+.+...-. + ++.+ + +.. . +.....++| +..+..++...+.
T Consensus 70 ~~~~~~~~~~~~~~~~gv~~y~id~~~~~~r~~~~~~~~~Y~~~~~~~~~d~~~rf~~f~~a~l~~~~~l~~~~~~~~~~ 149 (536)
T 3vue_A 70 VADRYERVRFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKG 149 (536)
T ss_dssp ETTEEEEEEEEECEETTEEEEEEECTTTTCC------------------CHHHHHHHHHHHHHHHHHHHCCCCCCTTCCS
T ss_pred ecCceEEEEEEEEEECCceEEEecChhhhccccccCCCcccCCCccCccchHHHHHHHHHHHHHHHHHHhccccchhhhc
Confidence 0011222222111100 0 0000 0 000 0 011111222 2223333333322
Q ss_pred --CCceEEEEcCCCchHHHHHHHHhc-------CCcEEEEecCCCccCCC-CCch-----hh---h--hcc---cccccc
Q 003962 382 --GKPDLIIGNYSDGNIVASLLAHKL-------GVTQCTIAHALEKTKYP-DSDI-----YW---K--NLD---DKYHFS 438 (783)
Q Consensus 382 --~~pDIIh~h~~~~~lva~llar~l-------gvp~v~t~H~l~~~~~~-~s~~-----~~---~--~~~---~~y~f~ 438 (783)
.++||+|+|.|.+++++.+++... ++|+|+|+|++...... .... .+ . .+. ....+.
T Consensus 150 ~~~~ddIiH~hDW~t~l~~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (536)
T 3vue_A 150 TYGEDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEG 229 (536)
T ss_dssp CCCSCEEEEEESGGGSTHHHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCCCGGGHHHHEEEETTTSTTCE
T ss_pred cCCCCEEEEECcchHHHHHHHHHHhhhhhhhhcccceeeeecCcccccccchhhhhhcCCchhhcchhhhhhcccccccc
Confidence 357899999999988888877653 69999999997543311 0000 00 0 000 001111
Q ss_pred chhhHhHHhhhcCCEEEcCCHHHHhhccccccccccccccccccceeeeccCCCCCCcEEEecCCccCCCCCCCchHHHh
Q 003962 439 CQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRR 518 (783)
Q Consensus 439 ~~~~~e~~a~~~AD~IIt~S~~~~~~~~~~v~qy~~~~~f~~p~l~~v~~gi~~~~~k~~VIpnGvD~~~f~p~~~~~~r 518 (783)
..+...+.++..||.|+|+|+..++.+....+. . +. + ..... ..++.+|+||||.+.|.|.++....
T Consensus 230 ~~~n~~k~~i~~ad~v~tVS~~~a~ei~~~~~~-g------~~-l---~~~~~--~~~i~~I~NGiD~~~~~p~~d~~~~ 296 (536)
T 3vue_A 230 RKINWMKAGILEADRVLTVSPYYAEELISGIAR-G------CE-L---DNIMR--LTGITGIVNGMDVSEWDPSKDKYIT 296 (536)
T ss_dssp EEEEHHHHHHHHCSEEEESCHHHHHHHHTTCCC-C------SS-S---CCCSC--CCSCEECCCCCCTTTSCTTTCSSSS
T ss_pred cchhHHHHHHHhccEEEEcCHHHhhhhhccccc-c------cc-c---ccccc--cCCeEEEECCcchhhcCCCCccccc
Confidence 223345678899999999999887754332110 0 00 0 00111 5689999999999999986543211
Q ss_pred hccC-chhhHHhhcChhhhhhhhccccCCCCcEEEEEecccCCCCHHHHHHHHHHhHccCCCeEEEEEeCCCCCCCccHH
Q 003962 519 LKSF-HPEIEELLYSDVENKEHLCVLKDRNKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLE 597 (783)
Q Consensus 519 ~~~~-~~~~~~~l~~~~~~~~~~gll~~~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~~e 597 (783)
.... ...++.+..++...++.+|+..+++.|+|+++||+.+.||++.|++|+.++.+ .+++|+|+|.|..
T Consensus 297 ~~~~~~~~~~~K~~~k~~l~~~~gl~~d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~--~~~~l~l~G~G~~------- 367 (536)
T 3vue_A 297 AKYDATTAIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQ--EDVQIVLLGTGKK------- 367 (536)
T ss_dssp CCCCTTTHHHHHHHHHHHHHHHTTSCCCTTSCEEEEECCBSGGGCHHHHHHHHHHHTT--SSCEEEEECCBCH-------
T ss_pred cccchhhhhhhhHHHHHHHHHhcCCCCCCCCcEEEEEeeccccCChHHHHHHHHHhHh--hCCeEEEEeccCc-------
Confidence 1110 12244455566677888999888899999999999999999999999999976 4689999999864
Q ss_pred HHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcCCcEEEcCcccccc
Q 003962 598 EQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAE 677 (783)
Q Consensus 598 e~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~GlPVVat~~GG~~E 677 (783)
.....++.....+ .++|.+.+ ..+.+++..+++. +|+||+||.+|+||++++|||+||+|||+|++||++|
T Consensus 368 --~~~~~~~~~~~~~--~~~v~~~~----~~~~~~~~~~~~~-aD~~v~PS~~E~fgl~~lEAma~G~PvI~s~~gG~~e 438 (536)
T 3vue_A 368 --KFEKLLKSMEEKY--PGKVRAVV----KFNAPLAHLIMAG-ADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVD 438 (536)
T ss_dssp --HHHHHHHHHHHHS--TTTEEEEC----SCCHHHHHHHHHH-CSEEEECCSCCSSCSHHHHHHHTTCCEEECSCTHHHH
T ss_pred --hHHHHHHHHHhhc--CCceEEEE----eccHHHHHHHHHh-hheeecccccCCCCHHHHHHHHcCCCEEEcCCCCchh
Confidence 2334455555554 46899998 6777888888885 9999999999999999999999999999999999999
Q ss_pred ccccCceEE----------EECCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Q 003962 678 IIVNGKSGY----------HIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGF 747 (783)
Q Consensus 678 iI~dg~~G~----------li~p~d~e~lAeaI~~~l~~l~~dp~~~~~ms~~a~~~v~~~ysw~~~a~~ll~ly~~~~~ 747 (783)
+|.||++|+ +++|.|+++++++|.++++ +..++ .|++|.+++. .++|||++.|++|+++|+..+-
T Consensus 439 ~V~dg~~G~~~~~~~~~g~l~~~~d~~~la~ai~ral~-~~~~~-~~~~~~~~am---~~~fSW~~~A~~y~~ly~~L~~ 513 (536)
T 3vue_A 439 TVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIK-VVGTP-AYEEMVRNCM---NQDLSWKGPAKNWENVLLGLGV 513 (536)
T ss_dssp HCCBTTTEEECCCCCSCTTCCCHHHHHHHHHHHHHHHH-HTTSH-HHHHHHHHHH---HSCCSSHHHHHHHHHHHHTTCC
T ss_pred eeeCCCCccccccCCCceeEECCCCHHHHHHHHHHHHH-hcCcH-HHHHHHHHHH---HhcCCHHHHHHHHHHHHHHhhh
Confidence 999999999 6778899999999988874 33455 4788887774 4689999999999999987653
No 6
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=100.00 E-value=3.9e-40 Score=362.28 Aligned_cols=368 Identities=19% Similarity=0.295 Sum_probs=281.2
Q ss_pred CcceEEEEcccccccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHCCCceeeceeEEeCCCCCCCCCcccceeeee
Q 003962 253 MVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKV 332 (783)
Q Consensus 253 m~~rI~iis~h~~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~GheV~~~i~VvT~~~~~~~g~~~~~~~e~i 332 (783)
++|||++++++.. |..||.+.++. +|++.| +||+|+ |+|...+... ....
T Consensus 3 ~~mkIl~v~~~~~---------p~~gG~~~~~~--------~l~~~L--~g~~v~----v~~~~~~~~~-------~~~~ 52 (394)
T 3okp_A 3 ASRKTLVVTNDFP---------PRIGGIQSYLR--------DFIATQ--DPESIV----VFASTQNAEE-------AHAY 52 (394)
T ss_dssp -CCCEEEEESCCT---------TSCSHHHHHHH--------HHHTTS--CGGGEE----EEEECSSHHH-------HHHH
T ss_pred CCceEEEEeCccC---------CccchHHHHHH--------HHHHHh--cCCeEE----EEECCCCccc-------hhhh
Confidence 4689999997754 45799999999 566666 699999 8887543210 0111
Q ss_pred cCccCeEEEEeccCCCccccccccccccchhhHHHHHHHHHHHHHHHcCCCceEEEEcCCCchHHHHHHHHhcCCc-EEE
Q 003962 333 YGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVT-QCT 411 (783)
Q Consensus 333 ~~~~~v~Ilrvp~~~~~~~~~~~isr~~i~~~l~~f~~~~~~~l~~~l~~~pDIIh~h~~~~~lva~llar~lgvp-~v~ 411 (783)
....++.++++|..... .. ..+...+. .+.+. .+||+||+|..........++++.++| +|.
T Consensus 53 ~~~~~~~~~~~~~~~~~----------~~----~~~~~~l~-~~~~~--~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~i~ 115 (394)
T 3okp_A 53 DKTLDYEVIRWPRSVML----------PT----PTTAHAMA-EIIRE--REIDNVWFGAAAPLALMAGTAKQAGASKVIA 115 (394)
T ss_dssp HTTCSSEEEEESSSSCC----------SC----HHHHHHHH-HHHHH--TTCSEEEESSCTTGGGGHHHHHHTTCSEEEE
T ss_pred ccccceEEEEccccccc----------cc----hhhHHHHH-HHHHh--cCCCEEEECCcchHHHHHHHHHhcCCCcEEE
Confidence 22346788888764321 11 12222222 33332 379999999877644444557778887 788
Q ss_pred EecCCCccCCCCCchhhhhccccccccchhhHhHHhhhcCCEEEcCCHHHHhhccccccccccccccccccceeeeccCC
Q 003962 412 IAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGID 491 (783)
Q Consensus 412 t~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~~a~~~AD~IIt~S~~~~~~~~~~v~qy~~~~~f~~p~l~~v~~gi~ 491 (783)
+.|+... .|... .. .....+..++.+|.++++|+...+.+.+.. +
T Consensus 116 ~~h~~~~--------~~~~~-~~-----~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~-------------------~-- 160 (394)
T 3okp_A 116 STHGHEV--------GWSML-PG-----SRQSLRKIGTEVDVLTYISQYTLRRFKSAF-------------------G-- 160 (394)
T ss_dssp ECCSTHH--------HHTTS-HH-----HHHHHHHHHHHCSEEEESCHHHHHHHHHHH-------------------C--
T ss_pred Eeccchh--------hhhhc-ch-----hhHHHHHHHHhCCEEEEcCHHHHHHHHHhc-------------------C--
Confidence 9997522 11110 00 112234578899999999998776433321 1
Q ss_pred CCCCcEEEecCCccCCCCCCCchHHHhhccCchhhHHhhcChhhhhhhhccccCCCCcEEEEEecccCCCCHHHHHHHHH
Q 003962 492 VFDPKFNIVSPGADMSIYFPYTEEKRRLKSFHPEIEELLYSDVENKEHLCVLKDRNKPILFTMARLDRVKNLTGLVEWYG 571 (783)
Q Consensus 492 ~~~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~~~~~l~~~~~~~~~~gll~~~~k~iIl~vGRL~~~Kgl~~LieA~~ 571 (783)
...++.+||||+|.+.|.|...... ...++.+|+ ++++++|+|+||+.+.||++.+++|+.
T Consensus 161 -~~~~~~vi~ngv~~~~~~~~~~~~~----------------~~~~~~~~~--~~~~~~i~~~G~~~~~Kg~~~li~a~~ 221 (394)
T 3okp_A 161 -SHPTFEHLPSGVDVKRFTPATPEDK----------------SATRKKLGF--TDTTPVIACNSRLVPRKGQDSLIKAMP 221 (394)
T ss_dssp -SSSEEEECCCCBCTTTSCCCCHHHH----------------HHHHHHTTC--CTTCCEEEEESCSCGGGCHHHHHHHHH
T ss_pred -CCCCeEEecCCcCHHHcCCCCchhh----------------HHHHHhcCC--CcCceEEEEEeccccccCHHHHHHHHH
Confidence 1568999999999999887443321 134566777 677799999999999999999999999
Q ss_pred HhHccCCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHccCcEEEeCCCC-
Q 003962 572 KNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALY- 650 (783)
Q Consensus 572 ~l~~~~~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~aadvfV~PS~~- 650 (783)
++.+..++++|+|+|+|+. .+.+++++ .++.++|.|+| .++.+++..+++. +|++|+||.+
T Consensus 222 ~l~~~~~~~~l~i~G~g~~-----------~~~l~~~~--~~~~~~v~~~g----~~~~~~~~~~~~~-ad~~v~ps~~~ 283 (394)
T 3okp_A 222 QVIAARPDAQLLIVGSGRY-----------ESTLRRLA--TDVSQNVKFLG----RLEYQDMINTLAA-ADIFAMPARTR 283 (394)
T ss_dssp HHHHHSTTCEEEEECCCTT-----------HHHHHHHT--GGGGGGEEEEE----SCCHHHHHHHHHH-CSEEEECCCCB
T ss_pred HHHhhCCCeEEEEEcCchH-----------HHHHHHHH--hcccCeEEEcC----CCCHHHHHHHHHh-CCEEEecCccc
Confidence 9998889999999999865 35566666 56678999999 7788999999996 9999999999
Q ss_pred ------CCCcHHHHHHHHcCCcEEEcCccccccccccCceEEEECCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 003962 651 ------EAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKR 724 (783)
Q Consensus 651 ------E~fGltvlEAMa~GlPVVat~~GG~~EiI~dg~~G~li~p~d~e~lAeaI~~~l~~l~~dp~~~~~ms~~a~~~ 724 (783)
|+||++++|||+||+|||+|+.||..|++.++ +|++++++|+++++++|.+++ +|++.++++++++++.
T Consensus 284 ~~~~~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~-~g~~~~~~d~~~l~~~i~~l~----~~~~~~~~~~~~~~~~ 358 (394)
T 3okp_A 284 GGGLDVEGLGIVYLEAQACGVPVIAGTSGGAPETVTPA-TGLVVEGSDVDKLSELLIELL----DDPIRRAAMGAAGRAH 358 (394)
T ss_dssp GGGTBCCSSCHHHHHHHHTTCCEEECSSTTGGGGCCTT-TEEECCTTCHHHHHHHHHHHH----TCHHHHHHHHHHHHHH
T ss_pred cccccccccCcHHHHHHHcCCCEEEeCCCChHHHHhcC-CceEeCCCCHHHHHHHHHHHH----hCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 999999999999999997666 8999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHHH
Q 003962 725 IEEKYTWKIYSQRLLTLTGV 744 (783)
Q Consensus 725 v~~~ysw~~~a~~ll~ly~~ 744 (783)
+.++|||+.++++++++|+.
T Consensus 359 ~~~~~s~~~~~~~~~~~~~~ 378 (394)
T 3okp_A 359 VEAEWSWEIMGERLTNILQS 378 (394)
T ss_dssp HHHHTBHHHHHHHHHHHHHS
T ss_pred HHHhCCHHHHHHHHHHHHHH
Confidence 98899999999999999864
No 7
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=100.00 E-value=2.7e-40 Score=376.37 Aligned_cols=427 Identities=15% Similarity=0.165 Sum_probs=283.5
Q ss_pred ceEEEEcccccccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHCCCceeeceeEEeCCCCCCCCCcccc-------
Q 003962 255 FNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQ------- 327 (783)
Q Consensus 255 ~rI~iis~h~~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~GheV~~~i~VvT~~~~~~~g~~~~~------- 327 (783)
|||++++.+.+|. +..||.+.++. +|+++|+++||+|+ |+|...+.... ....
T Consensus 1 MkIl~v~~~~~P~-------~~~GG~~~~~~--------~la~~L~~~G~~V~----vi~~~~~~~~~-~~~~~~~~~~~ 60 (485)
T 2qzs_A 1 MQVLHVCSEMFPL-------LKTGGLADVIG--------ALPAAQIADGVDAR----VLLPAFPDIRR-GVTDAQVVSRR 60 (485)
T ss_dssp CEEEEECSCBTTT-------BCSSHHHHHHH--------HHHHHHHHTTCEEE----EEEECCHHHHH-HCTTCEEEEEE
T ss_pred CeEEEEeeecccc-------ccCCcHHHHHH--------HHHHHHHHcCCEEE----EEecCcccccc-ccccceeEEEe
Confidence 7999999776532 24699999999 66677799999999 98865321100 0000
Q ss_pred -----eeeee-cCccCeEEEEeccCC---Ccc-ccccccccccchhh-HHHH--HHHHHHHHHHHcC--CCceEEEEcCC
Q 003962 328 -----RLEKV-YGTKYSDILRVPFRT---EKG-VVRKWISRFEVWPY-LETY--TEDVAVEIAKELQ--GKPDLIIGNYS 392 (783)
Q Consensus 328 -----~~e~i-~~~~~v~Ilrvp~~~---~~~-~~~~~isr~~i~~~-l~~f--~~~~~~~l~~~l~--~~pDIIh~h~~ 392 (783)
..+.. ....++.+++++... ..+ .... .. ..-|+. ...+ .......+.+.+. .+|||||+|.+
T Consensus 61 ~~~~~~~~~~~~~~~gv~v~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Divh~~~~ 138 (485)
T 2qzs_A 61 DTFAGHITLLFGHYNGVGIYLIDAPHLYDRPGSPYHD-TN-LFAYTDNVLRFALLGWVGAEMASGLDPFWRPDVVHAHDW 138 (485)
T ss_dssp CCTTCCEEEEEEEETTEEEEEEECHHHHCCSSCSSBC-TT-SCBCTTHHHHHHHHHHHHHHHTTTSSTTCCCSEEEEETG
T ss_pred cccCCcEEEEEEEECCcEEEEEeChhhccCCCCccCC-cc-cCCCCchHHHHHHHHHHHHHHHHHhccCCCCCEEEeecc
Confidence 00000 012467888776421 000 0000 00 000100 0111 1122223333222 58999999987
Q ss_pred CchHHHHHHH-HhcCCcEEEEecCCCccCCCC-Cchhhhhccc------cccccchhhHhHHhhhcCCEEEcCCHHHHhh
Q 003962 393 DGNIVASLLA-HKLGVTQCTIAHALEKTKYPD-SDIYWKNLDD------KYHFSCQFTADLIAMNHTDFIITSTFQEIAG 464 (783)
Q Consensus 393 ~~~lva~lla-r~lgvp~v~t~H~l~~~~~~~-s~~~~~~~~~------~y~f~~~~~~e~~a~~~AD~IIt~S~~~~~~ 464 (783)
..++.+.+++ +..++|+|++.|+........ .......+.. ...+......++..++.+|.|+++|+...+.
T Consensus 139 ~~~~~~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~ 218 (485)
T 2qzs_A 139 HAGLAPAYLAARGRPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYARE 218 (485)
T ss_dssp GGTTHHHHHHHTTCSSEEEEEESCTTCCCEEEGGGGGTTTCCGGGCSTTTTEETTEEEHHHHHHHHCSEEEESSHHHHHH
T ss_pred chhHHHHHHhhccCCCCEEEEecCccccCCCCHHHHHhcCCCchhcccccccccccccHHHHHHHhcCeEEecCHHHHHH
Confidence 7666777776 678999999999974321100 0000000000 0001111234567789999999999987764
Q ss_pred ccccccccccccccccccceeeeccCCC------CC--CcEEEecCCccCCCCCCCchHHHhhccCchhhHHhhcChhhh
Q 003962 465 SKDTVGQYESHTAFTLPGLYRVVHGIDV------FD--PKFNIVSPGADMSIYFPYTEEKRRLKSFHPEIEELLYSDVEN 536 (783)
Q Consensus 465 ~~~~v~qy~~~~~f~~p~l~~v~~gi~~------~~--~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~~~~~l~~~~~~ 536 (783)
+.+.. | |++. .. .++.+||||+|.+.|.|..............++...-+....
T Consensus 219 ~~~~~--~----------------~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (485)
T 2qzs_A 219 ITEPQ--F----------------AYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQL 280 (485)
T ss_dssp TTSHH--H----------------HTTCHHHHHHHHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCGGGGHHHHHHH
T ss_pred Hhccc--c----------------CcchHHHHHhhccCCceEEEecCCCccccCccccccccccccccchhHHHHhHHHH
Confidence 33210 0 1110 02 689999999999988775321000000000000011112345
Q ss_pred hhhhccccCCCCcEEEEEecccCCCCHHHHHHHHHHhHccCCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCC
Q 003962 537 KEHLCVLKDRNKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNG 616 (783)
Q Consensus 537 ~~~~gll~~~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~ 616 (783)
++++|+..++++++|+++||+.+.||++.+++|+.++.+ ++++|+|+|+|+. .+.+.+++++++++ +
T Consensus 281 r~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g~~---------~~~~~l~~~~~~~~--~ 347 (485)
T 2qzs_A 281 QIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLE--QGGQLALLGAGDP---------VLQEGFLAAAAEYP--G 347 (485)
T ss_dssp HHHHTCCCCTTSCEEEEEEEESGGGCHHHHHHHHHHHHH--TTCEEEEEEEECH---------HHHHHHHHHHHHST--T
T ss_pred HHHcCCCCCCCCeEEEEeccCccccCHHHHHHHHHHHhh--CCcEEEEEeCCch---------HHHHHHHHHHHhCC--C
Confidence 667787333378999999999999999999999999976 4899999999853 34577888888875 6
Q ss_pred cEE-EccCCCCcCChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcCCcEEEcCccccccccccC---------ceEE
Q 003962 617 QFR-WISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNG---------KSGY 686 (783)
Q Consensus 617 ~V~-flG~~~~~~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~GlPVVat~~GG~~EiI~dg---------~~G~ 686 (783)
+|. |.| . +.+++..+++. +|++|+||.+|+||++++|||+||+|||+|+.||..|++.++ .+|+
T Consensus 348 ~v~~~~g----~-~~~~~~~~~~~-adv~v~pS~~E~~g~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~ 421 (485)
T 2qzs_A 348 QVGVQIG----Y-HEAFSHRIMGG-ADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGF 421 (485)
T ss_dssp TEEEEES----C-CHHHHHHHHHH-CSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBE
T ss_pred cEEEeCC----C-CHHHHHHHHHh-CCEEEECCccCCCcHHHHHHHHCCCCEEECCCCCccceeccCccccccccccceE
Confidence 886 888 4 56677889985 999999999999999999999999999999999999999998 8999
Q ss_pred EECCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 003962 687 HIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGV 744 (783)
Q Consensus 687 li~p~d~e~lAeaI~~~l~~l~~dp~~~~~ms~~a~~~v~~~ysw~~~a~~ll~ly~~ 744 (783)
+++++|++++|++|.+++. +..|++.+++|++++++ ++|||+.++++++++|+.
T Consensus 422 l~~~~d~~~la~~i~~ll~-~~~~~~~~~~~~~~~~~---~~fs~~~~~~~~~~ly~~ 475 (485)
T 2qzs_A 422 VFEDSNAWSLLRAIRRAFV-LWSRPSLWRFVQRQAMA---MDFSWQVAAKSYRELYYR 475 (485)
T ss_dssp EECSSSHHHHHHHHHHHHH-HHTSHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHh---hcCCHHHHHHHHHHHHHH
Confidence 9999999999999976652 22699999999999974 789999999999999864
No 8
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=100.00 E-value=3.8e-40 Score=375.10 Aligned_cols=431 Identities=14% Similarity=0.161 Sum_probs=283.4
Q ss_pred ceEEEEcccccccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHCCCceeeceeEEeCCCCCCCCCcccc-------
Q 003962 255 FNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQ------- 327 (783)
Q Consensus 255 ~rI~iis~h~~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~GheV~~~i~VvT~~~~~~~g~~~~~------- 327 (783)
|||++++.+.+|. +..||.+.++. +|+++|+++||+|+ |+|...+.... .+.+
T Consensus 1 MkIl~v~~~~~P~-------~~~GG~~~~~~--------~la~~L~~~G~~V~----vi~~~~~~~~~-~~~~~~~~~~~ 60 (485)
T 1rzu_A 1 MNVLSVSSEIYPL-------IKTGGLADVVG--------ALPIALEAHGVRTR----TLIPGYPAVKA-AVTDPVKCFEF 60 (485)
T ss_dssp CEEEEECSCBTTT-------BCSSHHHHHHH--------HHHHHHHTTTCEEE----EEEECCHHHHH-HCCSCEEEEEE
T ss_pred CeEEEEeeeeccc-------cccccHHHHHH--------HHHHHHHHcCCeEE----EEecccccccc-cccccceeEEE
Confidence 7999999877632 24699999999 66777899999999 99875422100 0000
Q ss_pred ------eeeee-cCccCeEEEEeccCCCcccccc--cccc--ccch-hhHHHH--HHHHHHHHHHHc--CCCceEEEEcC
Q 003962 328 ------RLEKV-YGTKYSDILRVPFRTEKGVVRK--WISR--FEVW-PYLETY--TEDVAVEIAKEL--QGKPDLIIGNY 391 (783)
Q Consensus 328 ------~~e~i-~~~~~v~Ilrvp~~~~~~~~~~--~isr--~~i~-~~l~~f--~~~~~~~l~~~l--~~~pDIIh~h~ 391 (783)
..... ....++.+++++...... +. .... ...| .....+ .......+.+.+ +.+|||||+|.
T Consensus 61 ~~~~~~~~~~~~~~~~gv~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiIh~~~ 138 (485)
T 1rzu_A 61 TDLLGEKADLLEVQHERLDLLILDAPAYYE--RSGGPYLGQTGKDYPDNWKRFAALSLAAARIGAGVLPGWRPDMVHAHD 138 (485)
T ss_dssp SCSSSCCEEEEEEEETTEEEEEEECHHHHC--SSSCSSBCTTSSBCTTHHHHHHHHHHHHHHHHTTCSSSCCCSEEEEEH
T ss_pred EEecCCeEEEEEEEecCceEEEEeChHHhC--CCccccCCcccccccchHHHHHHHHHHHHHHHHHhccCCCCCEEEecc
Confidence 00000 012467888876421000 00 0000 0001 001111 112233334333 46899999998
Q ss_pred CCchHHHHHHHHh--cCCcEEEEecCCCccCC-CCCch-----hhhhcc-ccccccchhhHhHHhhhcCCEEEcCCHHHH
Q 003962 392 SDGNIVASLLAHK--LGVTQCTIAHALEKTKY-PDSDI-----YWKNLD-DKYHFSCQFTADLIAMNHTDFIITSTFQEI 462 (783)
Q Consensus 392 ~~~~lva~llar~--lgvp~v~t~H~l~~~~~-~~s~~-----~~~~~~-~~y~f~~~~~~e~~a~~~AD~IIt~S~~~~ 462 (783)
+..++++.++++. .++|+|++.|+...... ..... .+..+. ....+......++..++.+|.||++|+...
T Consensus 139 ~~~~~~~~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~ 218 (485)
T 1rzu_A 139 WQAAMTPVYMRYAETPEIPSLLTIHNIAFQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGGLQTATALSTVSPSYA 218 (485)
T ss_dssp HHHTTHHHHHHHSSSCCCCEEEEESCTTCCCEECGGGGGGSCCCGGGSSTTTTEETTEEEHHHHHHHHCSEEEESCHHHH
T ss_pred cchhHHHHHHhhcccCCCCEEEEecCccccCCCCHHHHhhcCCChhhcccccccccccccHHHHHHhhcCEEEecCHhHH
Confidence 7666667777765 89999999999753211 10000 000000 000011112345678899999999999887
Q ss_pred hhccccccccccccccccccceeeeccCCCCCCcEEEecCCccCCCCCCCchHHHhhccCchhhHHhhcChhhhhhhhcc
Q 003962 463 AGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLKSFHPEIEELLYSDVENKEHLCV 542 (783)
Q Consensus 463 ~~~~~~v~qy~~~~~f~~p~l~~v~~gi~~~~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~~~~~l~~~~~~~~~~gl 542 (783)
+.+.+.. |. +.++.+ +.....++.+||||+|.+.|.|..............++...-+....++.+|+
T Consensus 219 ~~~~~~~--~g----~~~~~~------~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 286 (485)
T 1rzu_A 219 EEILTAE--FG----MGLEGV------IGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRI 286 (485)
T ss_dssp HHTTSHH--HH----TTCHHH------HHTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHTC
T ss_pred HHHhccc--cC----cchHHH------HHhhcCCceEEcCCCcccccCCcccccccccccccchhhHHHhHHHHHHhcCC
Confidence 6433210 00 000000 00125789999999999988775421000000000000000112344567787
Q ss_pred ccCCC-CcEEEEEecccCCCCHHHHHHHHHHhHccCCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEE-E
Q 003962 543 LKDRN-KPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFR-W 620 (783)
Q Consensus 543 l~~~~-k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~-f 620 (783)
+.+ +++|+|+||+.+.||++.|++|+.++.+ ++++|+|+|+|+. .+.+.+++++++++ ++|. |
T Consensus 287 --~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g~~---------~~~~~l~~~~~~~~--~~v~~~ 351 (485)
T 1rzu_A 287 --DDDGSPLFCVISRLTWQKGIDLMAEAVDEIVS--LGGRLVVLGAGDV---------ALEGALLAAASRHH--GRVGVA 351 (485)
T ss_dssp --CCSSSCEEEEESCBSTTTTHHHHHTTHHHHHH--TTCEEEEEECBCH---------HHHHHHHHHHHHTT--TTEEEE
T ss_pred --CCCCCeEEEEEccCccccCHHHHHHHHHHHHh--cCceEEEEeCCch---------HHHHHHHHHHHhCC--CcEEEe
Confidence 443 6799999999999999999999999976 4899999999853 34577888888875 6897 7
Q ss_pred ccCCCCcCChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcCCcEEEcCccccccccccC---------ceEEEECCC
Q 003962 621 ISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNG---------KSGYHIDPY 691 (783)
Q Consensus 621 lG~~~~~~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~GlPVVat~~GG~~EiI~dg---------~~G~li~p~ 691 (783)
.| . +.+++..+++. +|++|+||.+|+||++++|||+||+|||+|+.||..|++.++ .+|++++++
T Consensus 352 ~g----~-~~~~~~~~~~~-adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~ 425 (485)
T 1rzu_A 352 IG----Y-NEPLSHLMQAG-CDAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQFSPV 425 (485)
T ss_dssp ES----C-CHHHHHHHHHH-CSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEESSC
T ss_pred cC----C-CHHHHHHHHhc-CCEEEECcccCCCCHHHHHHHHCCCCEEEeCCCChhheecccccccccccCCcceEeCCC
Confidence 87 4 55677888885 999999999999999999999999999999999999999998 899999999
Q ss_pred CHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 003962 692 HGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGV 744 (783)
Q Consensus 692 d~e~lAeaI~~~l~~l~~dp~~~~~ms~~a~~~v~~~ysw~~~a~~ll~ly~~ 744 (783)
|++++|++|.+++. +..|++.+++|++++++ ++|||+.++++++++|+.
T Consensus 426 d~~~la~~i~~ll~-~~~~~~~~~~~~~~~~~---~~fs~~~~~~~~~~~y~~ 474 (485)
T 1rzu_A 426 TLDGLKQAIRRTVR-YYHDPKLWTQMQKLGMK---SDVSWEKSAGLYAALYSQ 474 (485)
T ss_dssp SHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHT---CCCBHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHH---HhCChHHHHHHHHHHHHH
Confidence 99999999976652 22699999999999974 789999999999999864
No 9
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=100.00 E-value=3.2e-39 Score=357.44 Aligned_cols=358 Identities=18% Similarity=0.256 Sum_probs=262.7
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHCCCceeeceeEEeCCCCCCCCCcccceeeeecCccCeEEEEeccCCCcccccc
Q 003962 275 PDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRK 354 (783)
Q Consensus 275 p~tGG~~vyv~d~araL~~eLa~~L~~~GheV~~~i~VvT~~~~~~~g~~~~~~~e~i~~~~~v~Ilrvp~~~~~~~~~~ 354 (783)
|..||.+.++. +|++.|+++||+|+ |+|...+.... ...+++.+..++......
T Consensus 24 p~~GG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~~~----------~~~~~i~~~~~~~~~~~~---- 77 (394)
T 2jjm_A 24 PSVGGSGVVGT--------ELGKQLAERGHEIH----FITSGLPFRLN----------KVYPNIYFHEVTVNQYSV---- 77 (394)
T ss_dssp C--CHHHHHHH--------HHHHHHHHTTCEEE----EECSSCC--------------CCCTTEEEECCCCC--------
T ss_pred CCCCCHHHHHH--------HHHHHHHhCCCEEE----EEeCCCCCccc----------ccCCceEEEecccccccc----
Confidence 55799999999 66677799999999 98875322100 112355665555432110
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHcCCCceEEEEcCCCchH-HHHHHHHhc--CCcEEEEecCCCccCCCCCchhhhhc
Q 003962 355 WISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNI-VASLLAHKL--GVTQCTIAHALEKTKYPDSDIYWKNL 431 (783)
Q Consensus 355 ~isr~~i~~~l~~f~~~~~~~l~~~l~~~pDIIh~h~~~~~l-va~llar~l--gvp~v~t~H~l~~~~~~~s~~~~~~~ 431 (783)
+....+...+...+.+.+.+ .+|||||+|+..+.. .+.++++.. ++|+|++.|+........
T Consensus 78 ----~~~~~~~~~~~~~l~~~l~~---~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~-------- 142 (394)
T 2jjm_A 78 ----FQYPPYDLALASKMAEVAQR---ENLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDITVLGS-------- 142 (394)
T ss_dssp ----CCSCCHHHHHHHHHHHHHHH---HTCSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECCHHHHHTTTT--------
T ss_pred ----cccccccHHHHHHHHHHHHH---cCCCEEEEcchhHHHHHHHHHHHhhcCCCCEEEEEecCcccccCC--------
Confidence 11111112222233333332 379999999876543 444444444 599999999842211000
Q ss_pred cccccccchhhHhHHhhhcCCEEEcCCHHHHhhccccccccccccccccccceeeeccCCCCCCcEEEecCCccCCCCCC
Q 003962 432 DDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFP 511 (783)
Q Consensus 432 ~~~y~f~~~~~~e~~a~~~AD~IIt~S~~~~~~~~~~v~qy~~~~~f~~p~l~~v~~gi~~~~~k~~VIpnGvD~~~f~p 511 (783)
...+ ....+..++.+|.|+++|+...+.+.+.. + . ..++.+||||+|.+.|.|
T Consensus 143 ~~~~-----~~~~~~~~~~ad~ii~~s~~~~~~~~~~~-------------------~-~--~~~~~vi~ngv~~~~~~~ 195 (394)
T 2jjm_A 143 DPSL-----NNLIRFGIEQSDVVTAVSHSLINETHELV-------------------K-P--NKDIQTVYNFIDERVYFK 195 (394)
T ss_dssp CTTT-----HHHHHHHHHHSSEEEESCHHHHHHHHHHT-------------------C-C--SSCEEECCCCCCTTTCCC
T ss_pred CHHH-----HHHHHHHHhhCCEEEECCHHHHHHHHHhh-------------------C-C--cccEEEecCCccHHhcCC
Confidence 0001 12345678899999999998776433221 1 1 468999999999998876
Q ss_pred CchHHHhhccCchhhHHhhcChhhhhhhhccccCCCCcEEEEEecccCCCCHHHHHHHHHHhHccCCCeEEEEEeCCCCC
Q 003962 512 YTEEKRRLKSFHPEIEELLYSDVENKEHLCVLKDRNKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRK 591 (783)
Q Consensus 512 ~~~~~~r~~~~~~~~~~~l~~~~~~~~~~gll~~~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~ 591 (783)
..... .++.+|+ ++++++|+++||+.+.||++.+++|+..+.+. ++++|+|+|+|+.
T Consensus 196 ~~~~~-------------------~~~~~~~--~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~-~~~~l~i~G~g~~- 252 (394)
T 2jjm_A 196 RDMTQ-------------------LKKEYGI--SESEKILIHISNFRKVKRVQDVVQAFAKIVTE-VDAKLLLVGDGPE- 252 (394)
T ss_dssp CCCHH-------------------HHHHTTC--C---CEEEEECCCCGGGTHHHHHHHHHHHHHS-SCCEEEEECCCTT-
T ss_pred cchHH-------------------HHHHcCC--CCCCeEEEEeeccccccCHHHHHHHHHHHHhh-CCCEEEEECCchH-
Confidence 53221 2344565 56778999999999999999999999999876 5799999999864
Q ss_pred CCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcCCcEEEcC
Q 003962 592 ESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATC 671 (783)
Q Consensus 592 ~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~GlPVVat~ 671 (783)
.++++++++++++.++|.|+|. .+++..+++. +|++|+||.+|+||++++|||+||+|||+|+
T Consensus 253 ----------~~~l~~~~~~~~l~~~v~~~g~------~~~~~~~~~~-adv~v~ps~~e~~~~~~~EAma~G~PvI~~~ 315 (394)
T 2jjm_A 253 ----------FCTILQLVKNLHIEDRVLFLGK------QDNVAELLAM-SDLMLLLSEKESFGLVLLEAMACGVPCIGTR 315 (394)
T ss_dssp ----------HHHHHHHHHTTTCGGGBCCCBS------CSCTHHHHHT-CSEEEECCSCCSCCHHHHHHHHTTCCEEEEC
T ss_pred ----------HHHHHHHHHHcCCCCeEEEeCc------hhhHHHHHHh-CCEEEeccccCCCchHHHHHHhcCCCEEEec
Confidence 3678889999999999999994 2457778885 9999999999999999999999999999999
Q ss_pred ccccccccccCceEEEECCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 003962 672 KGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGV 744 (783)
Q Consensus 672 ~GG~~EiI~dg~~G~li~p~d~e~lAeaI~~~l~~l~~dp~~~~~ms~~a~~~v~~~ysw~~~a~~ll~ly~~ 744 (783)
.||..|++.++.+|++++++|+++++++|.+++ +|++.+++|++++++.+.++|||+.++++++++|+.
T Consensus 316 ~~~~~e~v~~~~~g~~~~~~d~~~la~~i~~l~----~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 384 (394)
T 2jjm_A 316 VGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLL----KDEELHRNMGERARESVYEQFRSEKIVSQYETIYYD 384 (394)
T ss_dssp CTTSTTTCCBTTTEEEECTTCHHHHHHHHHHHH----HCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCChHHHhhcCCceEEeCCCCHHHHHHHHHHHH----cCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999997766 799999999999999999999999999999999865
No 10
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=100.00 E-value=1.5e-38 Score=351.57 Aligned_cols=364 Identities=14% Similarity=0.201 Sum_probs=265.7
Q ss_pred CCcceEEEEcccccccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHCCCceeeceeEEeCCCCCCCCCcccceeee
Q 003962 252 PMVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEK 331 (783)
Q Consensus 252 pm~~rI~iis~h~~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~GheV~~~i~VvT~~~~~~~g~~~~~~~e~ 331 (783)
.++|||++++++.. +..||.+.++. .|++.|+++||+|+ ++|.......... ...
T Consensus 18 ~~~MkIl~i~~~~~---------~~~gG~~~~~~--------~l~~~L~~~G~~V~----v~~~~~~~~~~~~----~~~ 72 (406)
T 2gek_A 18 GSHMRIGMVCPYSF---------DVPGGVQSHVL--------QLAEVLRDAGHEVS----VLAPASPHVKLPD----YVV 72 (406)
T ss_dssp ---CEEEEECSSCT---------TSCCHHHHHHH--------HHHHHHHHTTCEEE----EEESCCTTSCCCT----TEE
T ss_pred CCcceEEEEeccCC---------CCCCcHHHHHH--------HHHHHHHHCCCeEE----EEecCCccccCCc----ccc
Confidence 45799999995432 34589999999 66777799999999 8887643321111 111
Q ss_pred ecCccCeEEEEeccCCCccccccccccccchhhHHHHHHHHHHHHHHHcCCCceEEEEcCCCchHHHHHHHHhcCCcEEE
Q 003962 332 VYGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCT 411 (783)
Q Consensus 332 i~~~~~v~Ilrvp~~~~~~~~~~~isr~~i~~~l~~f~~~~~~~l~~~l~~~pDIIh~h~~~~~lva~llar~lgvp~v~ 411 (783)
.. + .++++|.... ..+. .+...+...+.+.+.. .+||+||+|.......+.++++..++|+|+
T Consensus 73 ~~---~-~~~~~~~~~~-------~~~~---~~~~~~~~~l~~~l~~---~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~ 135 (406)
T 2gek_A 73 SG---G-KAVPIPYNGS-------VARL---RFGPATHRKVKKWIAE---GDFDVLHIHEPNAPSLSMLALQAAEGPIVA 135 (406)
T ss_dssp EC---C-CCC----------------------CCHHHHHHHHHHHHH---HCCSEEEEECCCSSSHHHHHHHHEESSEEE
T ss_pred cC---C-cEEeccccCC-------cccc---cccHHHHHHHHHHHHh---cCCCEEEECCccchHHHHHHHHhcCCCEEE
Confidence 11 1 3444443221 0011 1111111222222322 279999999887655577777888999999
Q ss_pred EecCCCccCCCCCchhhhhccccccccchhhHhHHhhhcCCEEEcCCHHHHhhccccccccccccccccccceeeeccCC
Q 003962 412 IAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGID 491 (783)
Q Consensus 412 t~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~~a~~~AD~IIt~S~~~~~~~~~~v~qy~~~~~f~~p~l~~v~~gi~ 491 (783)
+.|+..... ..+..+. . .+ + ..++.+|.++++|....+.+.+. ++
T Consensus 136 ~~h~~~~~~-----~~~~~~~---~---~~--~-~~~~~~d~ii~~s~~~~~~~~~~---------------------~~ 180 (406)
T 2gek_A 136 TFHTSTTKS-----LTLSVFQ---G---IL--R-PYHEKIIGRIAVSDLARRWQMEA---------------------LG 180 (406)
T ss_dssp EECCCCCSH-----HHHHHHH---S---TT--H-HHHTTCSEEEESSHHHHHHHHHH---------------------HS
T ss_pred EEcCcchhh-----hhHHHHH---H---HH--H-HHHhhCCEEEECCHHHHHHHHHh---------------------cC
Confidence 999853211 1111110 1 11 1 56889999999998876633221 12
Q ss_pred CCCCcEEEecCCccCCCCCCCchHHHhhccCchhhHHhhcChhhhhhhhccccCCCCcEEEEEecc-cCCCCHHHHHHHH
Q 003962 492 VFDPKFNIVSPGADMSIYFPYTEEKRRLKSFHPEIEELLYSDVENKEHLCVLKDRNKPILFTMARL-DRVKNLTGLVEWY 570 (783)
Q Consensus 492 ~~~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~~~~~l~~~~~~~~~~gll~~~~k~iIl~vGRL-~~~Kgl~~LieA~ 570 (783)
.+++ +||||+|.+.|.+.... .++ +.+++.|+|+||+ .+.||++.+++++
T Consensus 181 --~~~~-vi~~~v~~~~~~~~~~~------------------------~~~--~~~~~~i~~~G~~~~~~Kg~~~li~a~ 231 (406)
T 2gek_A 181 --SDAV-EIPNGVDVASFADAPLL------------------------DGY--PREGRTVLFLGRYDEPRKGMAVLLAAL 231 (406)
T ss_dssp --SCEE-ECCCCBCHHHHHTCCCC------------------------TTC--SCSSCEEEEESCTTSGGGCHHHHHHHH
T ss_pred --CCcE-EecCCCChhhcCCCchh------------------------hhc--cCCCeEEEEEeeeCccccCHHHHHHHH
Confidence 4578 99999998766554311 111 3356899999999 9999999999999
Q ss_pred HHhHccCCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHccCcEEEeCCC-
Q 003962 571 GKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPAL- 649 (783)
Q Consensus 571 ~~l~~~~~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~aadvfV~PS~- 649 (783)
.++.+..++++|+|+|+++ . ++++++++++ .++|.|+| .++..++..+++. +|++|+||.
T Consensus 232 ~~l~~~~~~~~l~i~G~~~-----------~-~~l~~~~~~~--~~~v~~~g----~~~~~~~~~~~~~-adv~v~ps~~ 292 (406)
T 2gek_A 232 PKLVARFPDVEILIVGRGD-----------E-DELREQAGDL--AGHLRFLG----QVDDATKASAMRS-ADVYCAPHLG 292 (406)
T ss_dssp HHHHTTSTTCEEEEESCSC-----------H-HHHHHHTGGG--GGGEEECC----SCCHHHHHHHHHH-SSEEEECCCS
T ss_pred HHHHHHCCCeEEEEEcCCc-----------H-HHHHHHHHhc--cCcEEEEe----cCCHHHHHHHHHH-CCEEEecCCC
Confidence 9999888999999999984 2 5667777776 68999999 7778999999996 999999996
Q ss_pred CCCCcHHHHHHHHcCCcEEEcCccccccccccCceEEEECCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhC
Q 003962 650 YEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKY 729 (783)
Q Consensus 650 ~E~fGltvlEAMa~GlPVVat~~GG~~EiI~dg~~G~li~p~d~e~lAeaI~~~l~~l~~dp~~~~~ms~~a~~~v~~~y 729 (783)
.|+||++++|||+||+|||+|+.||..|++.++.+|++++++|+++++++|.+++ +|++.++++++++++.+. +|
T Consensus 293 ~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~----~~~~~~~~~~~~~~~~~~-~~ 367 (406)
T 2gek_A 293 GESFGIVLVEAMAAGTAVVASDLDAFRRVLADGDAGRLVPVDDADGMAAALIGIL----EDDQLRAGYVARASERVH-RY 367 (406)
T ss_dssp CCSSCHHHHHHHHHTCEEEECCCHHHHHHHTTTTSSEECCTTCHHHHHHHHHHHH----HCHHHHHHHHHHHHHHGG-GG
T ss_pred CCCCchHHHHHHHcCCCEEEecCCcHHHHhcCCCceEEeCCCCHHHHHHHHHHHH----cCHHHHHHHHHHHHHHHH-hC
Confidence 9999999999999999999999999999999999999999999999999997766 799999999999999997 99
Q ss_pred CHHHHHHHHHHHHHHh
Q 003962 730 TWKIYSQRLLTLTGVY 745 (783)
Q Consensus 730 sw~~~a~~ll~ly~~~ 745 (783)
||+.+++++.++|+..
T Consensus 368 s~~~~~~~~~~~~~~~ 383 (406)
T 2gek_A 368 DWSVVSAQIMRVYETV 383 (406)
T ss_dssp BHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999998753
No 11
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=100.00 E-value=1.5e-39 Score=355.56 Aligned_cols=366 Identities=16% Similarity=0.220 Sum_probs=262.3
Q ss_pred ceEEEEcccccccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHCCCceeeceeEEeCCCCCCCCCcccceeeeecC
Q 003962 255 FNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYG 334 (783)
Q Consensus 255 ~rI~iis~h~~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~GheV~~~i~VvT~~~~~~~g~~~~~~~e~i~~ 334 (783)
|||++++++.. | .||.+.++. +|++.|+++||+|+ |+|.......
T Consensus 1 MkIl~i~~~~~---------~-~gG~~~~~~--------~l~~~L~~~G~~V~----v~~~~~~~~~------------- 45 (374)
T 2iw1_A 1 MIVAFCLYKYF---------P-FGGLQRDFM--------RIASTVAARGHHVR----VYTQSWEGDC------------- 45 (374)
T ss_dssp -CEEEECSEEC---------T-TCHHHHHHH--------HHHHHHHHTTCCEE----EEESEECSCC-------------
T ss_pred CeEEEEEeecC---------C-CcchhhHHH--------HHHHHHHhCCCeEE----EEecCCCCCC-------------
Confidence 79999997654 2 499999999 66777799999999 8886532110
Q ss_pred ccCeEEEEeccCCCccccccccccccchhhHHHHHHHHHHHHHHHcCCCceEEEEcCCCchHHHHHHHHhcCCcEEEEec
Q 003962 335 TKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAH 414 (783)
Q Consensus 335 ~~~v~Ilrvp~~~~~~~~~~~isr~~i~~~l~~f~~~~~~~l~~~l~~~pDIIh~h~~~~~lva~llar~lgvp~v~t~H 414 (783)
.+++.+.++|...... ......+...+.+ +++. .+||+||+|.+..+..+..+++..+++.+.+.|
T Consensus 46 ~~~~~v~~~~~~~~~~-----------~~~~~~~~~~l~~-~i~~--~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (374)
T 2iw1_A 46 PKAFELIQVPVKSHTN-----------HGRNAEYYAWVQN-HLKE--HPADRVVGFNKMPGLDVYFAADVCYAEKVAQEK 111 (374)
T ss_dssp CTTCEEEECCCCCSSH-----------HHHHHHHHHHHHH-HHHH--SCCSEEEESSCCTTCSEEECCSCCHHHHHHHHC
T ss_pred CCCcEEEEEccCcccc-----------hhhHHHHHHHHHH-HHhc--cCCCEEEEecCCCCceeeeccccccceeeeecc
Confidence 1257788887653211 0111222222222 2222 479999998765432211111112222222333
Q ss_pred CCCccCCCCCchhhhhccccccccchhhHhHHhh--hcCCEEEcCCHHHHhhccccccccccccccccccceeeeccCCC
Q 003962 415 ALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAM--NHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDV 492 (783)
Q Consensus 415 ~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~~a~--~~AD~IIt~S~~~~~~~~~~v~qy~~~~~f~~p~l~~v~~gi~~ 492 (783)
+... .....+.+.. ..+...+ +.+|.|+++|+...+.+.+. .|++
T Consensus 112 ~~~~-----------~~~~~~~~~~--~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-------------------~~~~- 158 (374)
T 2iw1_A 112 GFLY-----------RLTSRYRHYA--AFERATFEQGKSTKLMMLTDKQIADFQKH-------------------YQTE- 158 (374)
T ss_dssp CHHH-----------HTSHHHHHHH--HHHHHHHSTTCCCEEEESCHHHHHHHHHH-------------------HCCC-
T ss_pred cchh-----------hhcHHHHHHH--HHHHHHhhccCCcEEEEcCHHHHHHHHHH-------------------hCCC-
Confidence 2110 0111111111 1223333 37999999998877643322 1333
Q ss_pred CCCcEEEecCCccCCCCCCCchHHHhhccCchhhHHhhcChhhhhhhhccccCCCCcEEEEEecccCCCCHHHHHHHHHH
Q 003962 493 FDPKFNIVSPGADMSIYFPYTEEKRRLKSFHPEIEELLYSDVENKEHLCVLKDRNKPILFTMARLDRVKNLTGLVEWYGK 572 (783)
Q Consensus 493 ~~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~~~~~l~~~~~~~~~~gll~~~~k~iIl~vGRL~~~Kgl~~LieA~~~ 572 (783)
..++.+||||+|.+.|.|......+ ...++.+|+ ++++++|+|+||+.+.||++.+++|+..
T Consensus 159 -~~~~~vi~ngv~~~~~~~~~~~~~~---------------~~~~~~~~~--~~~~~~i~~~G~~~~~K~~~~li~a~~~ 220 (374)
T 2iw1_A 159 -PERFQILPPGIYPDRKYSEQIPNSR---------------EIYRQKNGI--KEQQNLLLQVGSDFGRKGVDRSIEALAS 220 (374)
T ss_dssp -GGGEEECCCCCCGGGSGGGSCTTHH---------------HHHHHHTTC--CTTCEEEEEECSCTTTTTHHHHHHHHHT
T ss_pred -hhheEEecCCcCHHhcCcccchhHH---------------HHHHHHhCC--CCCCeEEEEeccchhhcCHHHHHHHHHH
Confidence 5789999999999888664321111 123456777 6678899999999999999999999999
Q ss_pred hHcc-CCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHccCcEEEeCCCCC
Q 003962 573 NAKL-RELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYE 651 (783)
Q Consensus 573 l~~~-~~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~aadvfV~PS~~E 651 (783)
+.+. .++++|+|+|+|+. ++++++++++++.++|.|+|. .+++..+++. +|++|+||.+|
T Consensus 221 l~~~~~~~~~l~i~G~g~~------------~~~~~~~~~~~~~~~v~~~g~------~~~~~~~~~~-ad~~v~ps~~e 281 (374)
T 2iw1_A 221 LPESLRHNTLLFVVGQDKP------------RKFEALAEKLGVRSNVHFFSG------RNDVSELMAA-ADLLLHPAYQE 281 (374)
T ss_dssp SCHHHHHTEEEEEESSSCC------------HHHHHHHHHHTCGGGEEEESC------CSCHHHHHHH-CSEEEECCSCC
T ss_pred hHhccCCceEEEEEcCCCH------------HHHHHHHHHcCCCCcEEECCC------cccHHHHHHh-cCEEEeccccC
Confidence 8765 57899999999863 567888999999999999994 2468888885 99999999999
Q ss_pred CCcHHHHHHHHcCCcEEEcCccccccccccCceEEEEC-CCCHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhCC
Q 003962 652 AFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHID-PYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYT 730 (783)
Q Consensus 652 ~fGltvlEAMa~GlPVVat~~GG~~EiI~dg~~G~li~-p~d~e~lAeaI~~~l~~l~~dp~~~~~ms~~a~~~v~~~ys 730 (783)
+||++++|||+||+|||+|+.||..|++.++.+|++++ |+|+++++++|.+++ +|++.+++|++++++.+ ++|+
T Consensus 282 ~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~----~~~~~~~~~~~~~~~~~-~~~~ 356 (374)
T 2iw1_A 282 AAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKAL----TQSPLRMAWAENARHYA-DTQD 356 (374)
T ss_dssp SSCHHHHHHHHHTCCEEEETTSTTTHHHHHHTCEEEECSSCCHHHHHHHHHHHH----HCHHHHHHHHHHHHHHH-HHSC
T ss_pred CcccHHHHHHHCCCCEEEecCCCchhhhccCCceEEeCCCCCHHHHHHHHHHHH----cChHHHHHHHHHHHHHH-HHhh
Confidence 99999999999999999999999999999999999998 899999999997766 79999999999999998 5679
Q ss_pred HHHHHHHHHHHHHH
Q 003962 731 WKIYSQRLLTLTGV 744 (783)
Q Consensus 731 w~~~a~~ll~ly~~ 744 (783)
|...++++.++++.
T Consensus 357 ~~~~~~~~~~~l~~ 370 (374)
T 2iw1_A 357 LYSLPEKAADIITG 370 (374)
T ss_dssp CSCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
No 12
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=100.00 E-value=4.8e-38 Score=350.50 Aligned_cols=371 Identities=17% Similarity=0.188 Sum_probs=261.0
Q ss_pred cceEEEEcccccccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHCCCceeeceeEEeCCCCCCCCCcccceeeeec
Q 003962 254 VFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVY 333 (783)
Q Consensus 254 ~~rI~iis~h~~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~GheV~~~i~VvT~~~~~~~g~~~~~~~e~i~ 333 (783)
.|||++++++. ..||.+.++. +|++.|+++||+|+ +++...+.. .......+.
T Consensus 40 ~mkIl~v~~~~-----------~~GG~~~~~~--------~l~~~L~~~G~~v~----v~~~~~~~~----~~~~~~~~~ 92 (416)
T 2x6q_A 40 GRSFVHVNSTS-----------FGGGVAEILH--------SLVPLLRSIGIEAR----WFVIEGPTE----FFNVTKTFH 92 (416)
T ss_dssp TCEEEEEESCS-----------SSSTHHHHHH--------HHHHHHHHTTCEEE----EEECCCCHH----HHHHHHHHH
T ss_pred ccEEEEEeCCC-----------CCCCHHHHHH--------HHHHHHHhCCCeEE----EEEccCCcc----hhhhhcccc
Confidence 48999998653 3599999999 66667799999999 777543210 000000000
Q ss_pred C-ccCeEEEEeccCCCccccccccccccchhhHHHHHHHHHHHHHHHcC-CCceEEEEcCCCchHHHHHHHHhcCCcEEE
Q 003962 334 G-TKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQ-GKPDLIIGNYSDGNIVASLLAHKLGVTQCT 411 (783)
Q Consensus 334 ~-~~~v~Ilrvp~~~~~~~~~~~isr~~i~~~l~~f~~~~~~~l~~~l~-~~pDIIh~h~~~~~lva~llar~lgvp~v~ 411 (783)
. ..+.... ++ . ......+ ......+...++ .+|||||+|.+.....+.++++ ++|+|+
T Consensus 93 ~~~~~~~~~--~~-----------~----~~~~~~~-~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~~~~~~--~~p~v~ 152 (416)
T 2x6q_A 93 NALQGNESL--KL-----------T----EEMKELY-LNVNRENSKFIDLSSFDYVLVHDPQPAALIEFYEK--KSPWLW 152 (416)
T ss_dssp HHHTTCCSC--CC-----------C----HHHHHHH-HHHHHHHHHSSCGGGSSEEEEESSTTGGGGGGSCC--CSCEEE
T ss_pred eeecccccc--cc-----------c----HHHHHHH-HHHHHHHHHHHhhcCCCEEEEeccchhhHHHHHHh--cCCEEE
Confidence 0 0000000 00 0 0001111 111222333333 4799999998766444433332 389999
Q ss_pred EecCCCccCCCCCchhhhhccccccccchhhHhHHhhhcCCEEE-cCCHHHHhhccccccccccccccccccceeeeccC
Q 003962 412 IAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFII-TSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGI 490 (783)
Q Consensus 412 t~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~~a~~~AD~II-t~S~~~~~~~~~~v~qy~~~~~f~~p~l~~v~~gi 490 (783)
+.|+..... ....|+. ....+..+|.+| ++|....+ ++
T Consensus 153 ~~h~~~~~~---~~~~~~~-------------~~~~~~~~~~~i~~~s~~~~~-------------------------~~ 191 (416)
T 2x6q_A 153 RCHIDLSSP---NREFWEF-------------LRRFVEKYDRYIFHLPEYVQP-------------------------EL 191 (416)
T ss_dssp ECCSCCSSC---CHHHHHH-------------HHHHHTTSSEEEESSGGGSCT-------------------------TS
T ss_pred EEccccCCc---cHHHHHH-------------HHHHHHhCCEEEEechHHHHh-------------------------hC
Confidence 999853221 1111111 112355677766 55532111 12
Q ss_pred CCCCCcEEEecCCccCCCCCCCchHHHhhccCchhhHHhhcChhhhhhhhccccCCCCcEEEEEecccCCCCHHHHHHHH
Q 003962 491 DVFDPKFNIVSPGADMSIYFPYTEEKRRLKSFHPEIEELLYSDVENKEHLCVLKDRNKPILFTMARLDRVKNLTGLVEWY 570 (783)
Q Consensus 491 ~~~~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~~~~~l~~~~~~~~~~gll~~~~k~iIl~vGRL~~~Kgl~~LieA~ 570 (783)
. ..++.+||||+|...+.+....... ....++.+|+ ++++++|+++||+.+.||++.+++|+
T Consensus 192 ~--~~~~~vi~ngvd~~~~~~~~~~~~~--------------~~~~r~~~~~--~~~~~~i~~vGrl~~~Kg~~~li~a~ 253 (416)
T 2x6q_A 192 D--RNKAVIMPPSIDPLSEKNVELKQTE--------------ILRILERFDV--DPEKPIITQVSRFDPWKGIFDVIEIY 253 (416)
T ss_dssp C--TTTEEECCCCBCTTSTTTSCCCHHH--------------HHHHHHHTTC--CTTSCEEEEECCCCTTSCHHHHHHHH
T ss_pred C--ccceEEeCCCCChhhhcccccChhh--------------HHHHHHHhCC--CCCCcEEEEEeccccccCHHHHHHHH
Confidence 2 4689999999998776543211000 0123456777 67789999999999999999999999
Q ss_pred HHhHccCCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHccCcEEEeCCCC
Q 003962 571 GKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALY 650 (783)
Q Consensus 571 ~~l~~~~~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~aadvfV~PS~~ 650 (783)
..+.+..|+++|+|+|+|+... ....+.++++++++++.++|.|+|+.. ..+.+++..+++. +|++|+||.+
T Consensus 254 ~~l~~~~~~~~l~i~G~g~~~~------~~~~~~l~~~~~~~~~~~~V~~~G~~~-~~~~~~~~~~~~~-ad~~v~ps~~ 325 (416)
T 2x6q_A 254 RKVKEKIPGVQLLLVGVMAHDD------PEGWIYFEKTLRKIGEDYDVKVLTNLI-GVHAREVNAFQRA-SDVILQMSIR 325 (416)
T ss_dssp HHHHHHCTTCEEEEEECCCTTC------HHHHHHHHHHHHHHTTCTTEEEEEGGG-TCCHHHHHHHHHH-CSEEEECCSS
T ss_pred HHHHHhCCCeEEEEEecCcccc------hhHHHHHHHHHHHhCCCCcEEEecccC-CCCHHHHHHHHHh-CCEEEECCCc
Confidence 9999888999999999997521 123456788899999999999999544 2446789999995 9999999999
Q ss_pred CCCcHHHHHHHHcCCcEEEcCccccccccccCceEEEECCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhCC
Q 003962 651 EAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYT 730 (783)
Q Consensus 651 E~fGltvlEAMa~GlPVVat~~GG~~EiI~dg~~G~li~p~d~e~lAeaI~~~l~~l~~dp~~~~~ms~~a~~~v~~~ys 730 (783)
|+||++++|||+||+|||+|+.||..|++.++.+|++++ |+++++++|.+++ +|++.+++|++++++++.++||
T Consensus 326 E~~~~~~lEAma~G~PvI~~~~~g~~e~i~~~~~g~l~~--d~~~la~~i~~ll----~~~~~~~~~~~~a~~~~~~~fs 399 (416)
T 2x6q_A 326 EGFGLTVTEAMWKGKPVIGRAVGGIKFQIVDGETGFLVR--DANEAVEVVLYLL----KHPEVSKEMGAKAKERVRKNFI 399 (416)
T ss_dssp CSSCHHHHHHHHTTCCEEEESCHHHHHHCCBTTTEEEES--SHHHHHHHHHHHH----HCHHHHHHHHHHHHHHHHHHTB
T ss_pred CCCccHHHHHHHcCCCEEEccCCCChhheecCCCeEEEC--CHHHHHHHHHHHH----hCHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999997 9999999997666 7999999999999999988999
Q ss_pred HHHHHHHHHHHHHH
Q 003962 731 WKIYSQRLLTLTGV 744 (783)
Q Consensus 731 w~~~a~~ll~ly~~ 744 (783)
|+.+++++.++|+.
T Consensus 400 ~~~~~~~~~~~~~~ 413 (416)
T 2x6q_A 400 ITKHMERYLDILNS 413 (416)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999864
No 13
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=100.00 E-value=3e-37 Score=343.36 Aligned_cols=359 Identities=13% Similarity=0.110 Sum_probs=263.3
Q ss_pred ceEEEEcccccccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHCCCceeeceeEEeCCCCCCCCCcccceeeeecC
Q 003962 255 FNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYG 334 (783)
Q Consensus 255 ~rI~iis~h~~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~GheV~~~i~VvT~~~~~~~g~~~~~~~e~i~~ 334 (783)
|||++++++. |..||.+.++. +|+++|+++ |+|+ |+|.... |.....
T Consensus 1 MkI~~v~~~~----------p~~gG~~~~~~--------~l~~~L~~~-~~V~----v~~~~~~---g~~~~~------- 47 (413)
T 3oy2_A 1 MKLIIVGAHS----------SVPSGYGRVMR--------AIVPRISKA-HEVI----VFGIHAF---GRSVHA------- 47 (413)
T ss_dssp CEEEEEEECT----------TCCSHHHHHHH--------HHHHHHTTT-SEEE----EEEESCC---SCCSCS-------
T ss_pred CeEEEecCCC----------CCCCCHHHHHH--------HHHHHHHhc-CCeE----EEeecCC---Cccccc-------
Confidence 8999999753 34599999999 677778899 9999 8875432 110000
Q ss_pred ccCeEEEEeccCCCccccccccccccchhhHHHHHHHHHHHHHHHcCCCceEEEEcCCCchHHHHHHHHhcCCc----EE
Q 003962 335 TKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVT----QC 410 (783)
Q Consensus 335 ~~~v~Ilrvp~~~~~~~~~~~isr~~i~~~l~~f~~~~~~~l~~~l~~~pDIIh~h~~~~~lva~llar~lgvp----~v 410 (783)
........... .++ +.... .+.+ ..+.+.+.. .+||+||+|++. ...+..+++..++| .+
T Consensus 48 --~~~~~~~~~~~---~~~-~~~~~-~~~~-----~~l~~~l~~---~~~Div~~~~~~-~~~~~~~~~~~~~~~~~~~~ 111 (413)
T 3oy2_A 48 --NIEEFDAQTAE---HVR-GLNEQ-GFYY-----SGLSEFIDV---HKPDIVMIYNDP-IVIGNYLLAMGKCSHRTKIV 111 (413)
T ss_dssp --SSEEEEHHHHH---HHT-TCCST-TCCH-----HHHHHHHHH---HCCSEEEEEECH-HHHHHHHHHGGGCCSCCEEE
T ss_pred --ccccCCccccc---ccc-ccccc-cchH-----HHHHHHHHh---cCCCEEEEcchH-HHHHHHHHHhccCCCCCcee
Confidence 01110100000 000 01100 1111 112223332 379999999554 45566666666655 34
Q ss_pred EEecCCCccCCCCCchhhhhccccccccchhhHhHHhhhcCC--EEEcCCHHHHhhccccccccccccccccccceeeec
Q 003962 411 TIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTD--FIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVH 488 (783)
Q Consensus 411 ~t~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~~a~~~AD--~IIt~S~~~~~~~~~~v~qy~~~~~f~~p~l~~v~~ 488 (783)
...|...... ... ....++.+| .+|++|+...+.+.+.
T Consensus 112 ~~~~~~~~~~--------~~~------------~~~~~~~~~~~~ii~~S~~~~~~~~~~-------------------- 151 (413)
T 3oy2_A 112 LYVDLVSKNI--------REN------------LWWIFSHPKVVGVMAMSKCWISDICNY-------------------- 151 (413)
T ss_dssp EEECCCSBSC--------CGG------------GGGGGGCTTEEEEEESSTHHHHHHHHT--------------------
T ss_pred eeccccchhh--------HHH------------HHHHHhccCCceEEEcCHHHHHHHHHc--------------------
Confidence 4555432110 000 124577888 9999998876643321
Q ss_pred cCCCCCCcEEEecCCccCCCCCCCchHHHhhccCchhhHHhhcChhhhhhhhccccCCCCcEEEEEecccCCCCHHHHHH
Q 003962 489 GIDVFDPKFNIVSPGADMSIYFPYTEEKRRLKSFHPEIEELLYSDVENKEHLCVLKDRNKPILFTMARLDRVKNLTGLVE 568 (783)
Q Consensus 489 gi~~~~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~~~~~l~~~~~~~~~~gll~~~~k~iIl~vGRL~~~Kgl~~Lie 568 (783)
|+ +.++.+||||+|.+.|.. .++.+|+....++++|+++||+.+.||++.+++
T Consensus 152 ~~---~~~~~vi~ngvd~~~~~~------------------------~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~li~ 204 (413)
T 3oy2_A 152 GC---KVPINIVSHFVDTKTIYD------------------------ARKLVGLSEYNDDVLFLNMNRNTARKRLDIYVL 204 (413)
T ss_dssp TC---CSCEEECCCCCCCCCCTT------------------------HHHHTTCGGGTTSEEEECCSCSSGGGTHHHHHH
T ss_pred CC---CCceEEeCCCCCHHHHHH------------------------HHHhcCCCcccCceEEEEcCCCchhcCcHHHHH
Confidence 22 568999999999987711 123356522337889999999999999999999
Q ss_pred HHHHhHccCCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCc-------EEEccCCCCcCChHHHHHHHHccC
Q 003962 569 WYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQ-------FRWISSQMNRVRNGELYRYICDTK 641 (783)
Q Consensus 569 A~~~l~~~~~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~-------V~flG~~~~~~~~~el~~~ia~aa 641 (783)
|+.++.+..++++|+|+|+|+..... ...+.++++++++++.++ |.|.| .++.+++..+++. +
T Consensus 205 a~~~l~~~~~~~~l~ivG~g~~~~~~-----~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g----~~~~~~~~~~~~~-a 274 (413)
T 3oy2_A 205 AAARFISKYPDAKVRFLCNSHHESKF-----DLHSIALRELVASGVDNVFTHLNKIMINRT----VLTDERVDMMYNA-C 274 (413)
T ss_dssp HHHHHHHHCTTCCEEEEEECCTTCSC-----CHHHHHHHHHHHHTCSCHHHHHTTEEEECS----CCCHHHHHHHHHH-C
T ss_pred HHHHHHHhCCCcEEEEEeCCcccchh-----hHHHHHHHHHHHcCcccccccccceeeccC----cCCHHHHHHHHHh-C
Confidence 99999988999999999999763211 123678888999999887 88888 7888999999996 9
Q ss_pred cEEEeCCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCce---------------EE--EECCCCHHHHHHHHHHHH
Q 003962 642 GAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKS---------------GY--HIDPYHGEQAAEILVDFF 704 (783)
Q Consensus 642 dvfV~PS~~E~fGltvlEAMa~GlPVVat~~GG~~EiI~dg~~---------------G~--li~p~d~e~lAeaI~~~l 704 (783)
|++|+||.+|+||++++|||+||+|||+|+.||..|++.++.+ |+ +++++|+++++++| +++
T Consensus 275 dv~v~pS~~E~~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l~ 353 (413)
T 3oy2_A 275 DVIVNCSSGEGFGLCSAEGAVLGKPLIISAVGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TFF 353 (413)
T ss_dssp SEEEECCSCCSSCHHHHHHHTTTCCEEEECCHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HHT
T ss_pred CEEEeCCCcCCCCcHHHHHHHcCCCEEEcCCCChHHHHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HHh
Confidence 9999999999999999999999999999999999999999887 99 99999999999999 887
Q ss_pred HHhhCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 003962 705 EKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGV 744 (783)
Q Consensus 705 ~~l~~dp~~~~~ms~~a~~~v~~~ysw~~~a~~ll~ly~~ 744 (783)
+|++.+++|++++++++.++|||+.++++++++|+.
T Consensus 354 ----~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 389 (413)
T 3oy2_A 354 ----KDEKNRKEYGKRVQDFVKTKPTWDDISSDIIDFFNS 389 (413)
T ss_dssp ----TSHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHH
T ss_pred ----cCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 899999999999999998899999999999999875
No 14
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=100.00 E-value=6.6e-36 Score=324.44 Aligned_cols=311 Identities=14% Similarity=0.080 Sum_probs=241.2
Q ss_pred cceEEEEccc--------ccccccCCCCCC-CCCcchhhHHHHHHHHHHHHHHHHHHCCCceeeceeEEeCCCCCCCCCc
Q 003962 254 VFNVVILTPH--------GYFAQDDVLGYP-DTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTT 324 (783)
Q Consensus 254 ~~rI~iis~h--------~~~~~~~~lg~p-~tGG~~vyv~d~araL~~eLa~~L~~~GheV~~~i~VvT~~~~~~~g~~ 324 (783)
+|||++++++ .+|.+ | ..||.+.++. +|++.|+++||+|+ ++|.......
T Consensus 3 ~mkIl~v~~~~~~~~~~~~~p~~------p~~~gG~~~~~~--------~l~~~L~~~G~~v~----v~~~~~~~~~--- 61 (342)
T 2iuy_A 3 PLKVALVNIPLRVPGSDAWISVP------PQGYGGIQWVVA--------NLMDGLLELGHEVF----LLGAPGSPAG--- 61 (342)
T ss_dssp CCEEEEECCCCBCTTSSSBCCSS------CSSSCHHHHHHH--------HHHHHHHHTTCEEE----EESCTTSCCC---
T ss_pred ccEEEEEeccccccCcccccccC------cccCChHHHHHH--------HHHHHHHHcCCeEE----EEecCCCCCC---
Confidence 3899999987 32111 2 3599999999 66667789999999 8886532211
Q ss_pred ccceeeeecCccCeEEEEeccCCCccccccccccccchhhHHHHHHHHHHHHHHHcCCCceEEEEcCCCchHHHHHHHHh
Q 003962 325 CGQRLEKVYGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHK 404 (783)
Q Consensus 325 ~~~~~e~i~~~~~v~Ilrvp~~~~~~~~~~~isr~~i~~~l~~f~~~~~~~l~~~l~~~pDIIh~h~~~~~lva~llar~ 404 (783)
.+++.+++ .. .+. . +..+++. .+||+||+|.+.....+ ++.
T Consensus 62 ----------~~~~~~~~--~~--------------~~~-------~-l~~~l~~--~~~Dvi~~~~~~~~~~~---~~~ 102 (342)
T 2iuy_A 62 ----------RPGLTVVP--AG--------------EPE-------E-IERWLRT--ADVDVVHDHSGGVIGPA---GLP 102 (342)
T ss_dssp ----------STTEEECS--CC--------------SHH-------H-HHHHHHH--CCCSEEEECSSSSSCST---TCC
T ss_pred ----------CCcceecc--CC--------------cHH-------H-HHHHHHh--cCCCEEEECCchhhHHH---Hhh
Confidence 01233221 10 010 1 2223332 37999999987654332 566
Q ss_pred cCCcEEEEecCCCccCCCCCchhhhhccccccccchhhHhHHhhhcCCEEEcCCHHHHhhccccccccccccccccccce
Q 003962 405 LGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLY 484 (783)
Q Consensus 405 lgvp~v~t~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~~a~~~AD~IIt~S~~~~~~~~~~v~qy~~~~~f~~p~l~ 484 (783)
.++| |++.|+..... ..+|.++++|+...+.+.+
T Consensus 103 ~~~p-v~~~h~~~~~~----------------------------~~~d~ii~~S~~~~~~~~~----------------- 136 (342)
T 2iuy_A 103 PGTA-FISSHHFTTRP----------------------------VNPVGCTYSSRAQRAHCGG----------------- 136 (342)
T ss_dssp TTCE-EEEEECSSSBC----------------------------SCCTTEEESCHHHHHHTTC-----------------
T ss_pred cCCC-EEEecCCCCCc----------------------------ccceEEEEcCHHHHHHHhc-----------------
Confidence 7999 99999864311 0189999999887662111
Q ss_pred eeeccCCCCCCcEEEecCCccCCCCCCCchHHHhhccCchhhHHhhcChhhhhhhhccccCCCCcEEEEEecccCCCCHH
Q 003962 485 RVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLKSFHPEIEELLYSDVENKEHLCVLKDRNKPILFTMARLDRVKNLT 564 (783)
Q Consensus 485 ~v~~gi~~~~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~~~~~l~~~~~~~~~~gll~~~~k~iIl~vGRL~~~Kgl~ 564 (783)
..++.+||||+|.+.|.+.... .+++++|+|+||+.+.||++
T Consensus 137 ---------~~~~~vi~ngvd~~~~~~~~~~-----------------------------~~~~~~i~~vG~~~~~Kg~~ 178 (342)
T 2iuy_A 137 ---------GDDAPVIPIPVDPARYRSAADQ-----------------------------VAKEDFLLFMGRVSPHKGAL 178 (342)
T ss_dssp ---------CTTSCBCCCCBCGGGSCCSTTC-----------------------------CCCCSCEEEESCCCGGGTHH
T ss_pred ---------CCceEEEcCCCChhhcCccccc-----------------------------CCCCCEEEEEeccccccCHH
Confidence 4578899999999887664320 23556899999999999999
Q ss_pred HHHHHHHHhHccCCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHccCcEE
Q 003962 565 GLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAF 644 (783)
Q Consensus 565 ~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~aadvf 644 (783)
.+++|+.++ +++|+|+|+|+. .+.+++++++++ ++|+|+| .++..++..+++. +|++
T Consensus 179 ~li~a~~~~-----~~~l~i~G~g~~-----------~~~l~~~~~~~~--~~v~~~g----~~~~~~l~~~~~~-adv~ 235 (342)
T 2iuy_A 179 EAAAFAHAC-----GRRLVLAGPAWE-----------PEYFDEITRRYG--STVEPIG----EVGGERRLDLLAS-AHAV 235 (342)
T ss_dssp HHHHHHHHH-----TCCEEEESCCCC-----------HHHHHHHHHHHT--TTEEECC----CCCHHHHHHHHHH-CSEE
T ss_pred HHHHHHHhc-----CcEEEEEeCccc-----------HHHHHHHHHHhC--CCEEEec----cCCHHHHHHHHHh-CCEE
Confidence 999999887 689999999965 356677777777 7999999 7778999999996 9999
Q ss_pred EeCCC----------CCCCcHHHHHHHHcCCcEEEcCcccccccccc--CceEEEECCCCHHHHHHHHHHHHHHhhCCHH
Q 003962 645 VQPAL----------YEAFGLTVVEAMTCGLPTFATCKGGPAEIIVN--GKSGYHIDPYHGEQAAEILVDFFEKCKADPS 712 (783)
Q Consensus 645 V~PS~----------~E~fGltvlEAMa~GlPVVat~~GG~~EiI~d--g~~G~li~p~d~e~lAeaI~~~l~~l~~dp~ 712 (783)
|+||. .|+||++++|||+||+|||+|+.||..|++.+ +.+|+++++ |+++++++|.+++ +
T Consensus 236 v~ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~s~~~~~~e~~~~~~~~~g~~~~~-d~~~l~~~i~~l~----~--- 307 (342)
T 2iuy_A 236 LAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTGNGCLAEIVPSVGEVVGYGTDF-APDEARRTLAGLP----A--- 307 (342)
T ss_dssp EECCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEECCTTTHHHHGGGGEEECCSSSCC-CHHHHHHHHHTSC----C---
T ss_pred EECCcccccccccccccCccHHHHHHHhcCCCEEEcCCCChHHHhcccCCCceEEcCC-CHHHHHHHHHHHH----H---
Confidence 99999 89999999999999999999999999999999 999999999 9999999996554 4
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 003962 713 YWDKISLGGLKRIEEKYTWKIYSQRLLTLTGV 744 (783)
Q Consensus 713 ~~~~ms~~a~~~v~~~ysw~~~a~~ll~ly~~ 744 (783)
++++++++.++|||+.+++++.++|+.
T Consensus 308 -----~~~~~~~~~~~~s~~~~~~~~~~~~~~ 334 (342)
T 2iuy_A 308 -----SDEVRRAAVRLWGHVTIAERYVEQYRR 334 (342)
T ss_dssp -----HHHHHHHHHHHHBHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 678899998999999999999999875
No 15
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=100.00 E-value=2.9e-33 Score=314.43 Aligned_cols=346 Identities=12% Similarity=0.036 Sum_probs=226.7
Q ss_pred CCcceEEEEcccccccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHCCCceeeceeEEeCCCCCCCCCcccceeee
Q 003962 252 PMVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEK 331 (783)
Q Consensus 252 pm~~rI~iis~h~~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~GheV~~~i~VvT~~~~~~~g~~~~~~~e~ 331 (783)
+..|||++++++..|+ ...||.. .+. +|+++|+++||+|+ |+|+.... .. ..
T Consensus 44 ~~~mrI~~v~~~~~p~-------~~~GG~~-~v~--------~la~~L~~~GheV~----Vvt~~~~~-~~----~~--- 95 (413)
T 2x0d_A 44 IKGKRLNLLVPSINQE-------HMFGGIS-TAL--------KLFEQFDNKKFKKR----IILTDATP-NP----KD--- 95 (413)
T ss_dssp CCSCEEEEEESCCCGG-------GCSHHHH-HHH--------HHHTTSCTTTCEEE----EEESSCCC-CH----HH---
T ss_pred CCCceEEEEeCCCCcc-------ccccHHH-HHH--------HHHHHHHHcCCceE----EEEecCCC-Ch----HH---
Confidence 4569999999988743 1247774 467 67777899999999 99986321 00 00
Q ss_pred ecCccCeEEEEeccCCCccccccccccccchhhHHHHHHHHHHHHHHHcCCCceEEEEcCCCchHHHHHHHH----h---
Q 003962 332 VYGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAH----K--- 404 (783)
Q Consensus 332 i~~~~~v~Ilrvp~~~~~~~~~~~isr~~i~~~l~~f~~~~~~~l~~~l~~~pDIIh~h~~~~~lva~llar----~--- 404 (783)
+........ .|+.....+.. .+..+...+ ..... ..+||+||++++.++..+..+.+ .
T Consensus 96 ~~~~~~~~~--~~~~~~~~~~~------~i~~~~~~~-----~~~~~--~~~~Dvv~a~~~~~~~~~~~~~~~~~~~~~~ 160 (413)
T 2x0d_A 96 LQSFKSFKY--VMPEEDKDFAL------QIVPFNDRY-----NRTIP--VAKHDIFIATAWWTAYAAQRIVSWQSDTYGI 160 (413)
T ss_dssp HGGGTTSEE--CCTTCCCCCSE------EEEECSCCT-----TCCEE--ECTTEEEEECSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhhhccce--eeccCCccccc------eeeeccccc-----ccccc--CCCCCEEEEehHHHHHHHHHhhhhhhhhccc
Confidence 000011111 11111100000 000000000 00000 13699999998755444443321 1
Q ss_pred cCCcEEEEecCCCccCCCCCchhhhhccccccccchhhHhHHhhhcCC--EEEcCCHHHHhhcccccccccccccccccc
Q 003962 405 LGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTD--FIITSTFQEIAGSKDTVGQYESHTAFTLPG 482 (783)
Q Consensus 405 lgvp~v~t~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~~a~~~AD--~IIt~S~~~~~~~~~~v~qy~~~~~f~~p~ 482 (783)
.+.|.+..+|+++...++... ........++.++ .+|++|....+.+.+.
T Consensus 161 ~~~~~~~~v~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~vi~~S~~~~~~l~~~-------------- 212 (413)
T 2x0d_A 161 PPNKILYIIQDFEPGFYQWSS--------------QYVLAESTYKYRGPQIAVFNSELLKQYFNNK-------------- 212 (413)
T ss_dssp CCCCEEEEECSCGGGGSCSSH--------------HHHHHHHTTSCCSCEEEEEESHHHHHHHHHH--------------
T ss_pred ccCcEEEEEeechhhcCccCh--------------HHHHHHHHhccCCceEEEEcCHHHHHHHHHc--------------
Confidence 246788888876543211110 0011233455554 5889998877643321
Q ss_pred ceeeeccCCCCCCcEEEecCCccCCCCCCCchHHHhhccCchhhHHhhcChhhhhhhhccccCCCCcEEEEEecc-cCCC
Q 003962 483 LYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLKSFHPEIEELLYSDVENKEHLCVLKDRNKPILFTMARL-DRVK 561 (783)
Q Consensus 483 l~~v~~gi~~~~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~~~~~l~~~~~~~~~~gll~~~~k~iIl~vGRL-~~~K 561 (783)
|++ .+++.+++||+|.+.|.+.. .+ .++++.|+++||+ .+.|
T Consensus 213 ------g~~--~~~~~~i~~g~d~~~~~~~~--------------------------~~---~~~~~~il~~gr~~~~~K 255 (413)
T 2x0d_A 213 ------GYN--FTDEYFFQPKINTTLKNYIN--------------------------DK---RQKEKIILVYGRPSVKRN 255 (413)
T ss_dssp ------TCC--CSEEEEECCCCCHHHHTTTT--------------------------SC---CCCCSEEEEEECTTCGGG
T ss_pred ------CCC--CCceEEeCCCcCchhhcccc--------------------------cc---cCCCCEEEEEecCchhcc
Confidence 332 35788999999976554310 00 2456688899997 6889
Q ss_pred CHHHHHHHHHHhHccCCC---eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHH
Q 003962 562 NLTGLVEWYGKNAKLREL---VNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYIC 638 (783)
Q Consensus 562 gl~~LieA~~~l~~~~~~---~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia 638 (783)
|++.+++|++++.+..|+ ++|+++|+|+.+ .++++.++|+|+| .++.+++..+|+
T Consensus 256 g~~~li~A~~~l~~~~~~~~~~~l~ivG~~~~~------------------~~l~~~~~v~f~G----~~~~~~l~~~~~ 313 (413)
T 2x0d_A 256 AFTLIVEALKIFVQKYDRSNEWKIISVGEKHKD------------------IALGKGIHLNSLG----KLTLEDYADLLK 313 (413)
T ss_dssp CHHHHHHHHHHHHHHCTTGGGCEEEEEESCCCC------------------EEEETTEEEEEEE----SCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCceEEEEEcCCchh------------------hhcCCcCcEEEcC----CCCHHHHHHHHH
Confidence 999999999999887775 899999998652 2456778999999 778899999999
Q ss_pred ccCcEEEeCCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCceEEEECCCCHHHHHHHHHHHHHHhhCCHHHHHHHH
Q 003962 639 DTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKIS 718 (783)
Q Consensus 639 ~aadvfV~PS~~E~fGltvlEAMa~GlPVVat~~GG~~EiI~dg~~G~li~p~d~e~lAeaI~~~l~~l~~dp~~~~~ms 718 (783)
. +|+||+||.+|+||++++||||||+|||++ .||..|+|.+|.+|++++|+|++++|++|.+++ +|++.+++
T Consensus 314 ~-adv~v~pS~~E~~g~~~lEAmA~G~PVV~~-~~g~~e~v~~~~~G~lv~~~d~~~la~ai~~ll----~~~~~~~~-- 385 (413)
T 2x0d_A 314 R-SSIGISLMISPHPSYPPLEMAHFGLRVITN-KYENKDLSNWHSNIVSLEQLNPENIAETLVELC----MSFNNRDV-- 385 (413)
T ss_dssp H-CCEEECCCSSSSCCSHHHHHHHTTCEEEEE-CBTTBCGGGTBTTEEEESSCSHHHHHHHHHHHH----HHTC------
T ss_pred h-CCEEEEecCCCCCCcHHHHHHhCCCcEEEe-CCCcchhhhcCCCEEEeCCCCHHHHHHHHHHHH----cCHHHHHH--
Confidence 5 999999999999999999999999999995 567789999999999999999999999997766 67777776
Q ss_pred HHHHHHHHHhCCHHHHHHH
Q 003962 719 LGGLKRIEEKYTWKIYSQR 737 (783)
Q Consensus 719 ~~a~~~v~~~ysw~~~a~~ 737 (783)
++++.+ +.|||+..+++
T Consensus 386 -~~~~~~-~~~~W~~~~~~ 402 (413)
T 2x0d_A 386 -DKKESS-NMMFYINEFNE 402 (413)
T ss_dssp ----CCB-SCGGGCCCC--
T ss_pred -hHHHHH-HhCCHHHHHHH
Confidence 566665 58999999877
No 16
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.97 E-value=2e-30 Score=283.16 Aligned_cols=339 Identities=11% Similarity=0.006 Sum_probs=235.8
Q ss_pred CcceEEEEcccccccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHCCCceeeceeEEeCCCCCCCCCcccceeeee
Q 003962 253 MVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKV 332 (783)
Q Consensus 253 m~~rI~iis~h~~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~GheV~~~i~VvT~~~~~~~g~~~~~~~e~i 332 (783)
|.|||++++ . .+||.+.... .|+++|+++||+|+ ++|...... . . .
T Consensus 5 m~mkIl~~~-~------------~~gG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~-----~---~-~ 50 (364)
T 1f0k_A 5 QGKRLMVMA-G------------GTGGHVFPGL--------AVAHHLMAQGWQVR----WLGTADRME-----A---D-L 50 (364)
T ss_dssp --CEEEEEC-C------------SSHHHHHHHH--------HHHHHHHTTTCEEE----EEECTTSTH-----H---H-H
T ss_pred CCcEEEEEe-C------------CCccchhHHH--------HHHHHHHHcCCEEE----EEecCCcch-----h---h-h
Confidence 348999997 1 1378888888 67777899999999 888643110 0 0 0
Q ss_pred cCccCeEEEEeccCCCccccccccccc-cchhhHHHHHHHHHHHHHHHcCCCceEEEEcCCCchHHHHHHHHhcCCcEEE
Q 003962 333 YGTKYSDILRVPFRTEKGVVRKWISRF-EVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCT 411 (783)
Q Consensus 333 ~~~~~v~Ilrvp~~~~~~~~~~~isr~-~i~~~l~~f~~~~~~~l~~~l~~~pDIIh~h~~~~~lva~llar~lgvp~v~ 411 (783)
....++.+..++....... ...... ..+.. ......+.+.+.+ .+||+||+|....+..+.++++..|+|+|+
T Consensus 51 ~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~l~~~l~~---~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~ 124 (364)
T 1f0k_A 51 VPKHGIEIDFIRISGLRGK--GIKALIAAPLRI-FNAWRQARAIMKA---YKPDVVLGMGGYVSGPGGLAAWSLGIPVVL 124 (364)
T ss_dssp GGGGTCEEEECCCCCCTTC--CHHHHHTCHHHH-HHHHHHHHHHHHH---HCCSEEEECSSTTHHHHHHHHHHTTCCEEE
T ss_pred ccccCCceEEecCCccCcC--ccHHHHHHHHHH-HHHHHHHHHHHHh---cCCCEEEEeCCcCchHHHHHHHHcCCCEEE
Confidence 1112566777665421110 000000 00111 1111222222222 379999999876666777888889999999
Q ss_pred EecCCCccCCCCCchhhhhccccccccchhhHhHHhhhcCCEEEcCCHHHHhhccccccccccccccccccceeeeccCC
Q 003962 412 IAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGID 491 (783)
Q Consensus 412 t~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~~a~~~AD~IIt~S~~~~~~~~~~v~qy~~~~~f~~p~l~~v~~gi~ 491 (783)
+.|+.... + ..+...+.+|.+++++...
T Consensus 125 ~~~~~~~~--------~--------------~~~~~~~~~d~v~~~~~~~------------------------------ 152 (364)
T 1f0k_A 125 HEQNGIAG--------L--------------TNKWLAKIATKVMQAFPGA------------------------------ 152 (364)
T ss_dssp EECSSSCC--------H--------------HHHHHTTTCSEEEESSTTS------------------------------
T ss_pred EecCCCCc--------H--------------HHHHHHHhCCEEEecChhh------------------------------
Confidence 99974210 0 1224566899999877320
Q ss_pred CCCCcEEEecCCccCCCCCCCchHHHhhccCchhhHHhhcChhhhhhhhccccCCCCcE-EEEEecccCCCCHHHHHHHH
Q 003962 492 VFDPKFNIVSPGADMSIYFPYTEEKRRLKSFHPEIEELLYSDVENKEHLCVLKDRNKPI-LFTMARLDRVKNLTGLVEWY 570 (783)
Q Consensus 492 ~~~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~~~~~l~~~~~~~~~~gll~~~~k~i-Il~vGRL~~~Kgl~~LieA~ 570 (783)
++ ++.+++||+|.+.|.+... ++.+++ ++++++ +++.||+.+.||.+.+++|+
T Consensus 153 -~~-~~~~i~n~v~~~~~~~~~~----------------------~~~~~~--~~~~~~il~~~g~~~~~k~~~~li~a~ 206 (364)
T 1f0k_A 153 -FP-NAEVVGNPVRTDVLALPLP----------------------QQRLAG--REGPVRVLVVGGSQGARILNQTMPQVA 206 (364)
T ss_dssp -SS-SCEECCCCCCHHHHTSCCH----------------------HHHHTT--CCSSEEEEEECTTTCCHHHHHHHHHHH
T ss_pred -cC-CceEeCCccchhhcccchh----------------------hhhccc--CCCCcEEEEEcCchHhHHHHHHHHHHH
Confidence 12 5679999999876544321 122444 445554 45556999999999999999
Q ss_pred HHhHccCCCeE-EEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHccCcEEEeCCC
Q 003962 571 GKNAKLRELVN-LVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPAL 649 (783)
Q Consensus 571 ~~l~~~~~~~~-LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~aadvfV~PS~ 649 (783)
.++.+ +++ ++++|+++. ++++++++++++ ++|+|+|++ +++..+++. +|++|+||-
T Consensus 207 ~~l~~---~~~~l~i~G~~~~------------~~l~~~~~~~~~-~~v~~~g~~------~~~~~~~~~-ad~~v~~sg 263 (364)
T 1f0k_A 207 AKLGD---SVTIWHQSGKGSQ------------QSVEQAYAEAGQ-PQHKVTEFI------DDMAAAYAW-ADVVVCRSG 263 (364)
T ss_dssp HHHGG---GEEEEEECCTTCH------------HHHHHHHHHTTC-TTSEEESCC------SCHHHHHHH-CSEEEECCC
T ss_pred HHhcC---CcEEEEEcCCchH------------HHHHHHHhhcCC-CceEEecch------hhHHHHHHh-CCEEEECCc
Confidence 99865 678 567787741 567778888887 479999944 457788885 999999983
Q ss_pred CCCCcHHHHHHHHcCCcEEEcCccccc--------cccccCceEEEECCCC--HHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 003962 650 YEAFGLTVVEAMTCGLPTFATCKGGPA--------EIIVNGKSGYHIDPYH--GEQAAEILVDFFEKCKADPSYWDKISL 719 (783)
Q Consensus 650 ~E~fGltvlEAMa~GlPVVat~~GG~~--------EiI~dg~~G~li~p~d--~e~lAeaI~~~l~~l~~dp~~~~~ms~ 719 (783)
|++++|||+||+|||+|+.||.. +++.+| .|++++++| +++++++| .++ |++.+++|++
T Consensus 264 ----~~~~~EAma~G~Pvi~~~~~g~~~~q~~~~~~~~~~g-~g~~~~~~d~~~~~la~~i----~~l--~~~~~~~~~~ 332 (364)
T 1f0k_A 264 ----ALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAG-AAKIIEQPQLSVDAVANTL----AGW--SRETLLTMAE 332 (364)
T ss_dssp ----HHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHHHTT-SEEECCGGGCCHHHHHHHH----HTC--CHHHHHHHHH
T ss_pred ----hHHHHHHHHhCCCEEEeeCCCCchhHHHHHHHHHhCC-cEEEeccccCCHHHHHHHH----Hhc--CHHHHHHHHH
Confidence 99999999999999999999864 466666 599999988 99999999 555 9999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH
Q 003962 720 GGLKRIEEKYTWKIYSQRLLTLTGV 744 (783)
Q Consensus 720 ~a~~~v~~~ysw~~~a~~ll~ly~~ 744 (783)
++++.+ +.|+|+.++++++++|+.
T Consensus 333 ~~~~~~-~~~~~~~~~~~~~~~y~~ 356 (364)
T 1f0k_A 333 RARAAS-IPDATERVANEVSRVARA 356 (364)
T ss_dssp HHHHTC-CTTHHHHHHHHHHHHHTT
T ss_pred HHHHhh-ccCHHHHHHHHHHHHHHH
Confidence 999887 689999999999999864
No 17
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=99.97 E-value=6.4e-30 Score=295.43 Aligned_cols=335 Identities=15% Similarity=0.167 Sum_probs=224.5
Q ss_pred CCceEEEEcCCCchHHHHHHHH-hcCCcEEEEecCCCccCC----CCCchhhh--hcc-----ccccccchhhHhHHhhh
Q 003962 382 GKPDLIIGNYSDGNIVASLLAH-KLGVTQCTIAHALEKTKY----PDSDIYWK--NLD-----DKYHFSCQFTADLIAMN 449 (783)
Q Consensus 382 ~~pDIIh~h~~~~~lva~llar-~lgvp~v~t~H~l~~~~~----~~s~~~~~--~~~-----~~y~f~~~~~~e~~a~~ 449 (783)
.+|||+|+|.|..+..+.++++ ..++|.|+|+|+.....+ ...+.++. .+. ....+......++.+..
T Consensus 180 ~~pdIiH~HDW~tg~~~~~Lk~~~~~i~tVfTiH~telGR~lagqg~~~~y~~L~~~~~d~ea~~~~i~~~~~~EKaga~ 259 (725)
T 3nb0_A 180 QHAIVAHFHEWLAGVALPLCRKRRIDVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEAGRFGIYHRYCIERAAAH 259 (725)
T ss_dssp SEEEEEEEESGGGCTHHHHHHHTTCSCEEEEEESSCHHHHHHTSSSCSCHHHHGGGCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCcEEEeCchhhhHHHHHHHHhCCCCCEEEEEecchhhhhhhhcCCCchhhhhhhcCCChhhhhhchhHHHHHHHHHHH
Confidence 6799999999999888888875 458999999999742222 11122221 000 00111223445777889
Q ss_pred cCCEEEcCCHHHHhhccccccccccccccccccceeeeccCCCCCCcEEEecCCccCCCCCCCchHHHhhccCchhhHHh
Q 003962 450 HTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLKSFHPEIEEL 529 (783)
Q Consensus 450 ~AD~IIt~S~~~~~~~~~~v~qy~~~~~f~~p~l~~v~~gi~~~~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~~~~~ 529 (783)
.||.|+|+|+..+..++...+ . ++.. +||||+|.+.|.|..........-..++++.
T Consensus 260 ~AD~ITTVS~~yA~Ei~~Ll~-------------------r---~~d~-iIpNGID~~~f~p~~~~~~~k~~aK~klq~~ 316 (725)
T 3nb0_A 260 SADVFTTVSQITAFEAEHLLK-------------------R---KPDG-ILPNGLNVIKFQAFHEFQNLHALKKEKINDF 316 (725)
T ss_dssp HSSEEEESSHHHHHHHHHHTS-------------------S---CCSE-ECCCCBCCCCCSSTTHHHHHHHHHHHHHHHH
T ss_pred hCCEEEECCHHHHHHHHHHhc-------------------C---CCCE-EEcCCccccccCcchhhHHHHHHHHHHHHHH
Confidence 999999999988776554211 1 2232 3999999999998632221111111122221
Q ss_pred hcChhhhhhhhccccC-CCCcEEEEEeccc-CCCCHHHHHHHHHHhHcc-------CCCeEEEEEeCCCCCCC-------
Q 003962 530 LYSDVENKEHLCVLKD-RNKPILFTMARLD-RVKNLTGLVEWYGKNAKL-------RELVNLVVVGGDRRKES------- 593 (783)
Q Consensus 530 l~~~~~~~~~~gll~~-~~k~iIl~vGRL~-~~Kgl~~LieA~~~l~~~-------~~~~~LvIVG~g~~~~~------- 593 (783)
+- ......+++ + +++++|+.+||+. +.||++.+++|+.++... ..-+.|+|+..+.....
T Consensus 317 l~--~~~~~~l~l--~~dk~liifivgRle~~nKGiDl~ieAl~~L~~~l~~~~~~~~vvafii~p~~~~~~~~~~l~~~ 392 (725)
T 3nb0_A 317 VR--GHFHGCFDF--DLDNTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQ 392 (725)
T ss_dssp HH--HHTTTCCCS--CGGGEEEEEEESSCCTTTTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCCEEEECHHHHHHH
T ss_pred HH--hhcccCCCC--CCCceeEEEEEEEeccccCCHHHHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCCCchhhhcch
Confidence 11 000111233 3 3456677789999 789999999999998743 23477888877644210
Q ss_pred --------------------------------------ccHHHH---H------------------------------HH
Q 003962 594 --------------------------------------KDLEEQ---A------------------------------EM 602 (783)
Q Consensus 594 --------------------------------------~~~ee~---~------------------------------~~ 602 (783)
.|.++. + ..
T Consensus 393 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~lkr~~~~~~~~~~~lpp~~TH~~~~~~~ 472 (725)
T 3nb0_A 393 AEVRALENTVHEVTTSIGKRIFDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDAN 472 (725)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCSSSCCCHHHHCCHHHHHHHHHHHHHHCCCTTCCCCSBSEEETTGGG
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHhcccccccCCCCCCCHHHhcChHHHHHHHHHHHhhccCCCCCCCeeeeecccCCc
Confidence 011111 0 01
Q ss_pred HHHHHHHHHcCCCCc------EEEccCCCCc---CChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcCCcEEEcCcc
Q 003962 603 KKMYSLIDQYKLNGQ------FRWISSQMNR---VRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKG 673 (783)
Q Consensus 603 ~~l~~li~~~~L~~~------V~flG~~~~~---~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~GlPVVat~~G 673 (783)
+.+...++++++.++ |.|++.-.+. +-..++..+++. +|+||+||++|+||++++||||||+|||+|+.|
T Consensus 473 D~Il~~~r~l~L~N~~~drVKVIf~P~~L~~~d~lf~~d~~~~~~~-advfV~PS~~EgfGl~~LEAmA~G~PvI~s~~g 551 (725)
T 3nb0_A 473 DLILNKIRQVQLFNSPSDRVKMIFHPEFLNANNPILGLDYDEFVRG-CHLGVFPSYYEPWGYTPAECTVMGVPSITTNVS 551 (725)
T ss_dssp CHHHHHHHHHTCCCCTTCSEEEEECCSCCCTTCSSSCCCHHHHHHH-CSEEECCCSSBSSCHHHHHHHHTTCCEEEETTB
T ss_pred cHHHHHHHhcCCCCCcCCceeEEEeccccCCCCccchhHHHHHHhh-ceEEEeccccCCCCHHHHHHHHcCCCEEEeCCC
Confidence 123344566777665 6777522211 112257777774 999999999999999999999999999999999
Q ss_pred ccccccccC-------ceEEEE---CCCCHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 003962 674 GPAEIIVNG-------KSGYHI---DPYHGEQAAEILVDFFEKCK-ADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLT 742 (783)
Q Consensus 674 G~~EiI~dg-------~~G~li---~p~d~e~lAeaI~~~l~~l~-~dp~~~~~ms~~a~~~v~~~ysw~~~a~~ll~ly 742 (783)
|+.|+|.++ .+|+++ ++.|+++++++|.+++..+. .++..+.+|++++++.+ +.|||+.++++|+++|
T Consensus 552 G~~d~V~dg~~~~~~~~tG~lV~~rd~~d~ee~aeaLa~aL~~f~~~d~~~r~~mr~~ar~~A-~~FSWe~iA~~Yl~~Y 630 (725)
T 3nb0_A 552 GFGSYMEDLIETNQAKDYGIYIVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALS-DLLDWKRMGLEYVKAR 630 (725)
T ss_dssp HHHHHHHTTSCHHHHHHTTEEEECCSSSCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHGG-GGGBHHHHHHHHHHHH
T ss_pred ChhhhhhccccccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHH
Confidence 999999876 369988 45688988888888876655 47888999999998776 7999999999999999
Q ss_pred HHh
Q 003962 743 GVY 745 (783)
Q Consensus 743 ~~~ 745 (783)
+..
T Consensus 631 e~a 633 (725)
T 3nb0_A 631 QLA 633 (725)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 18
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=99.97 E-value=1.5e-31 Score=299.60 Aligned_cols=245 Identities=12% Similarity=0.053 Sum_probs=182.5
Q ss_pred CceEEEEcCCCchHHHHHHHHhcCCcEEEEecCCCccCCCCCchhhhhccccccccchhhHhHHhhhcCCEEEcCCHHHH
Q 003962 383 KPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEI 462 (783)
Q Consensus 383 ~pDIIh~h~~~~~lva~llar~lgvp~v~t~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~~a~~~AD~IIt~S~~~~ 462 (783)
++||||.+....+. ...+++..++|++++.|+..... .+. ... .....++..++.+|.||++|+...
T Consensus 124 ~~DvIh~~~~~~~~-~~~~~~~~~~p~v~~~h~~~~~~------~~~----~~~--~~~~~~~~~~~~ad~vi~~S~~~~ 190 (406)
T 2hy7_A 124 ESDVIVFESGIAVA-FIELAKRVNPAAKLVYRASDGLS------TIN----VAS--YIEREFDRVAPTLDVIALVSPAMA 190 (406)
T ss_dssp HCSEEEEESSGGGG-GHHHHHHHCTTSEEEEEESSCHH------HHT----CCH--HHHHHHHHHGGGCSEEEESCGGGG
T ss_pred CCCEEEECCchHHH-HHHHHHHhCCCEEEEEeccchhh------ccc----ccH--HHHHHHHHHHHhCCEEEEcCHHHH
Confidence 58999943322222 12456778999999999743200 000 000 111235567899999999997765
Q ss_pred hhccccccccccccccccccceeeeccCCCCCCcEEEecCCccCCCCCCCchHHHhhccCchhhHHhhcChhhhhhhhcc
Q 003962 463 AGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLKSFHPEIEELLYSDVENKEHLCV 542 (783)
Q Consensus 463 ~~~~~~v~qy~~~~~f~~p~l~~v~~gi~~~~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~~~~~l~~~~~~~~~~gl 542 (783)
+.+.+ . . ++.+||||+|.+.|.|....
T Consensus 191 ~~~~~----------------------~---~-~i~vipngvd~~~f~~~~~~--------------------------- 217 (406)
T 2hy7_A 191 AEVVS----------------------R---D-NVFHVGHGVDHNLDQLGDPS--------------------------- 217 (406)
T ss_dssp GGCSC----------------------S---T-TEEECCCCBCTTHHHHHCSC---------------------------
T ss_pred HHHHh----------------------c---C-CEEEEcCCcChHhcCccccc---------------------------
Confidence 42111 0 2 89999999998766432110
Q ss_pred ccCCCCcEEEEEecccCCCCHHHHHHHHHHhHccCCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEcc
Q 003962 543 LKDRNKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWIS 622 (783)
Q Consensus 543 l~~~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG 622 (783)
..+++++|+|+||+.+.||+ +..+.+..++++|+|+|+|+ ++++++.++|+|+|
T Consensus 218 -~~~~~~~i~~vGrl~~~Kg~------~~~l~~~~~~~~l~ivG~g~-------------------~~~~~l~~~V~f~G 271 (406)
T 2hy7_A 218 -PYAEGIHAVAVGSMLFDPEF------FVVASKAFPQVTFHVIGSGM-------------------GRHPGYGDNVIVYG 271 (406)
T ss_dssp -SCCSSEEEEEECCTTBCHHH------HHHHHHHCTTEEEEEESCSS-------------------CCCTTCCTTEEEEC
T ss_pred -ccCCCcEEEEEeccccccCH------HHHHHHhCCCeEEEEEeCch-------------------HHhcCCCCCEEEcC
Confidence 02334789999999999998 33344456899999999883 45567889999999
Q ss_pred CCCCcCChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHH-------HcCCcEEEcCccccccccccCceEEE-ECCCCHH
Q 003962 623 SQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAM-------TCGLPTFATCKGGPAEIIVNGKSGYH-IDPYHGE 694 (783)
Q Consensus 623 ~~~~~~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAM-------a~GlPVVat~~GG~~EiI~dg~~G~l-i~p~d~e 694 (783)
.++.+++..+++. +|++|+||..|+||++++||| |||+|||+|+. |.++.+|++ ++|+|++
T Consensus 272 ----~~~~~~l~~~~~~-adv~v~ps~~E~~~~~~lEAm~Kl~eYla~G~PVIas~~------v~~~~~G~l~v~~~d~~ 340 (406)
T 2hy7_A 272 ----EMKHAQTIGYIKH-ARFGIAPYASEQVPVYLADSSMKLLQYDFFGLPAVCPNA------VVGPYKSRFGYTPGNAD 340 (406)
T ss_dssp ----CCCHHHHHHHHHT-CSEEECCBSCSCCCTTHHHHCHHHHHHHHHTCCEEEEGG------GTCSCSSEEEECTTCHH
T ss_pred ----CCCHHHHHHHHHh-cCEEEECCCcccCchHHHHHHHHHHHHhhCCCcEEEehh------cccCcceEEEeCCCCHH
Confidence 7788999999995 999999999999999999999 99999999987 677889999 9999999
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH--HHH
Q 003962 695 QAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTL--TGV 744 (783)
Q Consensus 695 ~lAeaI~~~l~~l~~dp~~~~~ms~~a~~~v~~~ysw~~~a~~ll~l--y~~ 744 (783)
++|++|.+++ +|++ + ...++|||+.++++++++ |..
T Consensus 341 ~la~ai~~ll----~~~~---------~-~~~~~~sw~~~a~~~~~~~~y~~ 378 (406)
T 2hy7_A 341 SVIAAITQAL----EAPR---------V-RYRQCLNWSDTTDRVLDPRAYPE 378 (406)
T ss_dssp HHHHHHHHHH----HCCC---------C-CCSCCCBHHHHHHHHHCGGGSGG
T ss_pred HHHHHHHHHH----hCcc---------h-hhhhcCCHHHHHHHHHHhhcccc
Confidence 9999997776 5655 1 234789999999999998 543
No 19
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.96 E-value=2.7e-28 Score=283.15 Aligned_cols=173 Identities=9% Similarity=0.055 Sum_probs=154.2
Q ss_pred hhhhccccCCCCcEEEEEecccCCCCHHHHHHHHHHhHccCCCeEEEEEe-CCCCCCCccHHHHHHHHHHHHHHHHcCCC
Q 003962 537 KEHLCVLKDRNKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVG-GDRRKESKDLEEQAEMKKMYSLIDQYKLN 615 (783)
Q Consensus 537 ~~~~gll~~~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIVG-~g~~~~~~~~ee~~~~~~l~~li~~~~L~ 615 (783)
++.+|+ +++ ++++++||+.+ ||++.+++++.++.+..|+++|+|+| +|+ ..+.+++.++++++.
T Consensus 368 r~~~~~--~~~-~~v~~~g~~~~-K~~~~li~a~~~l~~~~~~~~l~i~G~~g~-----------~~~~l~~~~~~~~l~ 432 (568)
T 2vsy_A 368 RTQCGL--PEQ-GVVLCCFNNSY-KLNPQSMARMLAVLREVPDSVLWLLSGPGE-----------ADARLRAFAHAQGVD 432 (568)
T ss_dssp TGGGTC--CTT-SCEEEECCCGG-GCCHHHHHHHHHHHHHCTTCEEEEECCSTT-----------HHHHHHHHHHHTTCC
T ss_pred ccccCC--CCC-CEEEEeCCccc-cCCHHHHHHHHHHHHhCCCcEEEEecCCHH-----------HHHHHHHHHHHcCCC
Confidence 455676 333 45679999999 99999999999998888999999999 663 357888999999998
Q ss_pred -CcEEEccCCCCcCChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcCCcEEE-------cCcc-------ccccccc
Q 003962 616 -GQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFA-------TCKG-------GPAEIIV 680 (783)
Q Consensus 616 -~~V~flG~~~~~~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~GlPVVa-------t~~G-------G~~EiI~ 680 (783)
++|+|+| .++.+++..+++. +|+||+||.+ +||++++|||+||+|||+ |+.| |..|+|.
T Consensus 433 ~~~v~~~g----~~~~~~~~~~~~~-adv~v~ps~~-~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~~~g~~e~v~ 506 (568)
T 2vsy_A 433 AQRLVFMP----KLPHPQYLARYRH-ADLFLDTHPY-NAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGLDEMNV 506 (568)
T ss_dssp GGGEEEEC----CCCHHHHHHHGGG-CSEEECCSSS-CCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHHHHTCGGGBC
T ss_pred hhHEEeeC----CCCHHHHHHHHhc-CCEEeeCCCC-CCcHHHHHHHhCCCCEEeccCCCchHHHHHHHHHHCCChhhhc
Confidence 9999999 6777899999995 9999999999 999999999999999999 9999 9999985
Q ss_pred cCceEEEECCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHHHH
Q 003962 681 NGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRI--EEKYTWKIYSQRLLTLTGV 744 (783)
Q Consensus 681 dg~~G~li~p~d~e~lAeaI~~~l~~l~~dp~~~~~ms~~a~~~v--~~~ysw~~~a~~ll~ly~~ 744 (783)
+ |+++++++|.+++ .|++.+++|++++++++ .+.|||+.++++++++|+.
T Consensus 507 ~----------~~~~la~~i~~l~----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~y~~ 558 (568)
T 2vsy_A 507 A----------DDAAFVAKAVALA----SDPAALTALHARVDVLRRASGVFHMDGFADDFGALLQA 558 (568)
T ss_dssp S----------SHHHHHHHHHHHH----HCHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHH
T ss_pred C----------CHHHHHHHHHHHh----cCHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHH
Confidence 5 8999999997665 89999999999999998 6789999999999999864
No 20
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.96 E-value=8.9e-29 Score=270.87 Aligned_cols=275 Identities=14% Similarity=0.112 Sum_probs=197.6
Q ss_pred CceEEEEcCCC-chHHHHHHHHhcCCcEEEEecCCCccCCCCCchhhhhccccccccchhhHhHHhhhcCCEEEcCCHHH
Q 003962 383 KPDLIIGNYSD-GNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQE 461 (783)
Q Consensus 383 ~pDIIh~h~~~-~~lva~llar~lgvp~v~t~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~~a~~~AD~IIt~S~~~ 461 (783)
+||+||+|... .++.+.++++..++|++++.|+... + . .|..+ . .........+.+|.++++|+..
T Consensus 95 ~pDvv~~~~~~~~~~~~~~~~~~~~ip~v~~~~~~~~--~---~-~~~~~------~-~~~~~~~~~~~~d~ii~~s~~~ 161 (375)
T 3beo_A 95 KPDIVLVHGDTTTTFIASLAAFYNQIPVGHVEAGLRT--W---D-KYSPY------P-EEMNRQLTGVMADLHFSPTAKS 161 (375)
T ss_dssp CCSEEEEETTSHHHHHHHHHHHHTTCCEEEESCCCCC--S---C-TTSST------T-HHHHHHHHHHHCSEEEESSHHH
T ss_pred CCCEEEEeCCchHHHHHHHHHHHHCCCEEEEeccccc--c---c-ccCCC------h-hHhhhhHHhhhhheeeCCCHHH
Confidence 79999998653 3566677888899999988776521 0 0 01000 0 0011222344599999999887
Q ss_pred HhhccccccccccccccccccceeeeccCCCCCCcEEEecCC-ccCCCCCCCchHHHhhccCchhhHHhhcChhhhhhhh
Q 003962 462 IAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPG-ADMSIYFPYTEEKRRLKSFHPEIEELLYSDVENKEHL 540 (783)
Q Consensus 462 ~~~~~~~v~qy~~~~~f~~p~l~~v~~gi~~~~~k~~VIpnG-vD~~~f~p~~~~~~r~~~~~~~~~~~l~~~~~~~~~~ 540 (783)
.+.+.+ .|++ ..++.+|+|| +|...+.+..... .+.++.+
T Consensus 162 ~~~~~~--------------------~g~~--~~~i~vi~n~~~d~~~~~~~~~~~-----------------~~~~~~~ 202 (375)
T 3beo_A 162 ATNLQK--------------------ENKD--ESRIFITGNTAIDALKTTVKETYS-----------------HPVLEKL 202 (375)
T ss_dssp HHHHHH--------------------TTCC--GGGEEECCCHHHHHHHHHCCSSCC-----------------CHHHHTT
T ss_pred HHHHHH--------------------cCCC--cccEEEECChhHhhhhhhhhhhhh-----------------HHHHHhc
Confidence 663221 1333 5689999999 7865543321000 0011111
Q ss_pred ccccCCCCcEEEEEecccCC-CCHHHHHHHHHHhHccCCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEE
Q 003962 541 CVLKDRNKPILFTMARLDRV-KNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFR 619 (783)
Q Consensus 541 gll~~~~k~iIl~vGRL~~~-Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~ 619 (783)
++++.+++++||+.+. ||++.+++|+.++.+..|++++++ |+|+.. ...+.+++++ +..++|.
T Consensus 203 ----~~~~~vl~~~gr~~~~~K~~~~li~a~~~l~~~~~~~~~i~-~~g~~~--------~~~~~~~~~~---~~~~~v~ 266 (375)
T 3beo_A 203 ----GNNRLVLMTAHRRENLGEPMRNMFRAIKRLVDKHEDVQVVY-PVHMNP--------VVRETANDIL---GDYGRIH 266 (375)
T ss_dssp ----TTSEEEEEECCCGGGTTHHHHHHHHHHHHHHHHCTTEEEEE-ECCSCH--------HHHHHHHHHH---TTCTTEE
T ss_pred ----cCCCeEEEEecccccchhHHHHHHHHHHHHHhhCCCeEEEE-eCCCCH--------HHHHHHHHHh---hccCCEE
Confidence 2344567899999876 999999999999988788998654 666431 1122223322 3346899
Q ss_pred EccCCCCcCChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcCCcEEEcC-ccccccccccCceEEEECCCCHHHHHH
Q 003962 620 WISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATC-KGGPAEIIVNGKSGYHIDPYHGEQAAE 698 (783)
Q Consensus 620 flG~~~~~~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~GlPVVat~-~GG~~EiI~dg~~G~li~p~d~e~lAe 698 (783)
|+| .++..++..+++. +|++|+|| |.+++|||+||+|||+|+ .||..|++.+| +|+++++ |++++++
T Consensus 267 ~~g----~~~~~~~~~~~~~-ad~~v~~s-----g~~~lEA~a~G~Pvi~~~~~~~~~e~v~~g-~g~~v~~-d~~~la~ 334 (375)
T 3beo_A 267 LIE----PLDVIDFHNVAAR-SYLMLTDS-----GGVQEEAPSLGVPVLVLRDTTERPEGIEAG-TLKLAGT-DEETIFS 334 (375)
T ss_dssp EEC----CCCHHHHHHHHHT-CSEEEECC-----HHHHHHHHHHTCCEEECSSCCSCHHHHHTT-SEEECCS-CHHHHHH
T ss_pred EeC----CCCHHHHHHHHHh-CcEEEECC-----CChHHHHHhcCCCEEEecCCCCCceeecCC-ceEEcCC-CHHHHHH
Confidence 998 5666789999995 99999998 778999999999999995 59999999888 9999986 9999999
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 003962 699 ILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLT 742 (783)
Q Consensus 699 aI~~~l~~l~~dp~~~~~ms~~a~~~v~~~ysw~~~a~~ll~ly 742 (783)
+|.+++ +|++.+++|++++++.. +.|+|+.+++++.+++
T Consensus 335 ~i~~ll----~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~ 373 (375)
T 3beo_A 335 LADELL----SDKEAHDKMSKASNPYG-DGRASERIVEAILKHF 373 (375)
T ss_dssp HHHHHH----HCHHHHHHHCCCCCTTC-CSCHHHHHHHHHHHHT
T ss_pred HHHHHH----hChHhHhhhhhcCCCCC-CCcHHHHHHHHHHHHh
Confidence 997766 79999999999998876 6899999999998865
No 21
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.96 E-value=9.1e-28 Score=274.45 Aligned_cols=316 Identities=13% Similarity=0.037 Sum_probs=213.0
Q ss_pred CCceEEEEcCCCchHHHHHHHHhc-CCcEEEEecCCCccCCCCCchhhhhccccccccchhhHhHHhhhcCCEEEcCCHH
Q 003962 382 GKPDLIIGNYSDGNIVASLLAHKL-GVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQ 460 (783)
Q Consensus 382 ~~pDIIh~h~~~~~lva~llar~l-gvp~v~t~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~~a~~~AD~IIt~S~~ 460 (783)
..+|+||+|.+...+++.+++++. ++|++++.|... +.+. .|..+ + ....-...+-.+|.+...+..
T Consensus 122 ~~~DiV~vHdyhl~~l~~~lr~~~~~~~i~~~~H~pf----p~~~-~~~~l-p------~~~~il~~ll~~d~i~f~~~~ 189 (482)
T 1uqt_A 122 QDDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPF----PTPE-IFNAL-P------TYDTLLEQLCDYDLLGFQTEN 189 (482)
T ss_dssp CTTCEEEEESGGGTTHHHHHHHTTCCSCEEEECCSCC----CCHH-HHTTS-T------THHHHHHHHTTSSEEEESSHH
T ss_pred CCCCEEEEECchHHHHHHHHHHhCCCCcEEEEEcCCC----CCHH-HHhhC-c------cHHHHHHhhhccCeEEEECHH
Confidence 367999999887666776666654 799999999742 2221 11111 0 000112234577888777765
Q ss_pred HHhhccccccccccccccccccceeeeccCCCCCCcEEEecCCccCCCCCCCchHHHhhccCchhhHHhhcChhhhhhhh
Q 003962 461 EIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLKSFHPEIEELLYSDVENKEHL 540 (783)
Q Consensus 461 ~~~~~~~~v~qy~~~~~f~~p~l~~v~~gi~~~~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~~~~~l~~~~~~~~~~ 540 (783)
....+-.........+.. ..+. ....| ...++.+||||||.+.|.+....... ++ ....++.+
T Consensus 190 ~~~~f~~~~~~~l~~~~~-~~~~-~~~~g---~~~~v~vip~GID~~~f~~~~~~~~~--------~~----~~~lr~~~ 252 (482)
T 1uqt_A 190 DRLAFLDCLSNLTRVTTR-SAKS-HTAWG---KAFRTEVYPIGIEPKEIAKQAAGPLP--------PK----LAQLKAEL 252 (482)
T ss_dssp HHHHHHHHHHHHSCEEEE-TTTE-EEETT---EEEEEEECCCCCCHHHHHHHHHSCCC--------HH----HHHHHHHT
T ss_pred HHHHHHHHHHHHhCCccc-cCCe-EEECC---eEEEEEEEeccCCHHHHHHHhcCcch--------HH----HHHHHHHh
Confidence 444322111110000000 0000 01112 13578999999998877542110000 00 01123333
Q ss_pred ccccCCCCcEEEEEecccCCCCHHHHHHHHHHhHccCCC----eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcC---
Q 003962 541 CVLKDRNKPILFTMARLDRVKNLTGLVEWYGKNAKLREL----VNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYK--- 613 (783)
Q Consensus 541 gll~~~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~----~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~--- 613 (783)
| ++++|+++||+++.||+..+++|++++.+.+|+ ++|+++|++..... .+.....+++++++.+.+
T Consensus 253 ~-----~~~vil~VgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vG~p~~~~~--~~~~~l~~~l~~l~~~in~~~ 325 (482)
T 1uqt_A 253 K-----NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDV--QAYQDIRHQLENEAGRINGKY 325 (482)
T ss_dssp T-----TCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEEEEECCBCSTTS--HHHHHHHHHHHHHHHHHHHHH
T ss_pred C-----CCEEEEEEeCCcccCCHHHHHHHHHHHHHhCccccCcEEEEEEECCCccch--HHHHHHHHHHHHHHHHHhhhc
Confidence 3 578999999999999999999999999877664 78999997532111 122234455666665533
Q ss_pred -CC--CcEEE-ccCCCCcCChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcCC-----cEEEcCccccccccccCce
Q 003962 614 -LN--GQFRW-ISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGL-----PTFATCKGGPAEIIVNGKS 684 (783)
Q Consensus 614 -L~--~~V~f-lG~~~~~~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~Gl-----PVVat~~GG~~EiI~dg~~ 684 (783)
.. ..|+| .| .++.+++..+|+. +|+||+||.+||||++++||||||+ |+|+|+.+|..+.+. +
T Consensus 326 g~~~~~~v~~~~g----~v~~~el~~ly~~-ADv~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~S~~~G~~~~l~---~ 397 (482)
T 1uqt_A 326 GQLGWTPLYYLNQ----HFDRKLLMKIFRY-SDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELT---S 397 (482)
T ss_dssp CBTTBCSEEEECS----CCCHHHHHHHHHH-CSEEEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTBGGGGTCT---T
T ss_pred ccCCCceEEEeCC----CCCHHHHHHHHHH-ccEEEECCCcccCCchHHHHHHhCCCCCCCCEEEECCCCCHHHhC---C
Confidence 21 24776 45 7788999999995 9999999999999999999999997 999999888888882 7
Q ss_pred EEEECCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 003962 685 GYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVY 745 (783)
Q Consensus 685 G~li~p~d~e~lAeaI~~~l~~l~~dp~~~~~ms~~a~~~v~~~ysw~~~a~~ll~ly~~~ 745 (783)
|++++|+|++++|++|.++++ .+++.++++++++++++ +.|||+.+++++++.|+..
T Consensus 398 g~lv~p~d~~~lA~ai~~lL~---~~~~~r~~~~~~~~~~v-~~~s~~~~a~~~l~~l~~~ 454 (482)
T 1uqt_A 398 ALIVNPYDRDEVAAALDRALT---MSLAERISRHAEMLDVI-VKNDINHWQECFISDLKQI 454 (482)
T ss_dssp SEEECTTCHHHHHHHHHHHHT---CCHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHS
T ss_pred eEEECCCCHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhc
Confidence 999999999999999977762 36788999999999998 5699999999999998654
No 22
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.95 E-value=5.3e-28 Score=265.84 Aligned_cols=284 Identities=11% Similarity=0.073 Sum_probs=199.9
Q ss_pred CceEEEEcCC-CchHHHHHHHHhcCCcEEEEecCCCccCCCCCchhhhhccccccccchhhHhHHhhhcCCEEEcCCHHH
Q 003962 383 KPDLIIGNYS-DGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQE 461 (783)
Q Consensus 383 ~pDIIh~h~~-~~~lva~llar~lgvp~v~t~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~~a~~~AD~IIt~S~~~ 461 (783)
+||+||+|.. ..++.+.++++..++|++++.|++.... .|..+.. ........+.+|.++++|+..
T Consensus 86 ~pDvv~~~~~~~~~~~~~~~a~~~~ip~v~~~~~~~~~~------~~~~~~~-------~~~~~~~~~~~d~ii~~s~~~ 152 (384)
T 1vgv_A 86 KPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAGLRTGD------LYSPWPE-------EANRTLTGHLAMYHFSPTETS 152 (384)
T ss_dssp CCSEEEEETTCHHHHHHHHHHHTTTCCEEEESCCCCCSC------TTSSTTH-------HHHHHHHHTTCSEEEESSHHH
T ss_pred CCCEEEEeCCchHHHHHHHHHHHHCCCEEEEeccccccc------ccCCCch-------HhhHHHHHhhccEEEcCcHHH
Confidence 7999999975 4456667778889999999999763210 0110000 001112245699999999877
Q ss_pred HhhccccccccccccccccccceeeeccCCCCCCcEEEecCCc-cCCCCCCCchHHHhhccCchhhHHhhcChhhhhhhh
Q 003962 462 IAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGA-DMSIYFPYTEEKRRLKSFHPEIEELLYSDVENKEHL 540 (783)
Q Consensus 462 ~~~~~~~v~qy~~~~~f~~p~l~~v~~gi~~~~~k~~VIpnGv-D~~~f~p~~~~~~r~~~~~~~~~~~l~~~~~~~~~~ 540 (783)
.+.+.+ .|++ ..++.+++||+ |...+.+. ..... +. ...+.++.+
T Consensus 153 ~~~l~~--------------------~g~~--~~~i~vi~n~~~d~~~~~~~-~~~~~-----~~------~~~~~~~~~ 198 (384)
T 1vgv_A 153 RQNLLR--------------------ENVA--DSRIFITGNTVIDALLWVRD-QVMSS-----DK------LRSELAANY 198 (384)
T ss_dssp HHHHHH--------------------TTCC--GGGEEECCCHHHHHHHHHHH-HTTTC-----HH------HHHHHHTTC
T ss_pred HHHHHH--------------------cCCC--hhhEEEeCChHHHHHHhhhh-ccccc-----hh------hhHHHHHhc
Confidence 663221 1343 56899999995 43211110 00000 00 000123445
Q ss_pred c-cccCCCC-cEEEEEecccCC-CCHHHHHHHHHHhHccCCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCc
Q 003962 541 C-VLKDRNK-PILFTMARLDRV-KNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQ 617 (783)
Q Consensus 541 g-ll~~~~k-~iIl~vGRL~~~-Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~ 617 (783)
| + ++++ .+++++||+.+. ||++.+++|+.++.+..|+++++++++... ...+.+++++. ..++
T Consensus 199 ~~~--~~~~~~vl~~~gr~~~~~kg~~~li~a~~~l~~~~~~~~l~i~~g~~~---------~~~~~l~~~~~---~~~~ 264 (384)
T 1vgv_A 199 PFI--DPDKKMILVTGHRRESFGRGFEEICHALADIATTHQDIQIVYPVHLNP---------NVREPVNRILG---HVKN 264 (384)
T ss_dssp TTC--CTTSEEEEEECCCBSSCCHHHHHHHHHHHHHHHHCTTEEEEEECCBCH---------HHHHHHHHHHT---TCTT
T ss_pred ccc--CCCCCEEEEEeCCccccchHHHHHHHHHHHHHhhCCCeEEEEEcCCCH---------HHHHHHHHHhh---cCCC
Confidence 5 4 3333 568899999976 999999999999988788999988644210 12334444432 2368
Q ss_pred EEEccCCCCcCChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcCCcEEEcCc-cccccccccCceEEEECCCCHHHH
Q 003962 618 FRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCK-GGPAEIIVNGKSGYHIDPYHGEQA 696 (783)
Q Consensus 618 V~flG~~~~~~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~GlPVVat~~-GG~~EiI~dg~~G~li~p~d~e~l 696 (783)
|.|+| .++..++..+|+. +|++|.|| |.+++|||+||+|||+|+. ||..|++.+| +|+++++ |++++
T Consensus 265 v~~~g----~~~~~~~~~~~~~-ad~~v~~S-----g~~~lEA~a~G~PvI~~~~~~~~~e~v~~g-~g~lv~~-d~~~l 332 (384)
T 1vgv_A 265 VILID----PQEYLPFVWLMNH-AWLILTDS-----GGIQEEAPSLGKPVLVMRDTTERPEAVTAG-TVRLVGT-DKQRI 332 (384)
T ss_dssp EEEEC----CCCHHHHHHHHHH-CSEEEESS-----STGGGTGGGGTCCEEEESSCCSCHHHHHHT-SEEEECS-SHHHH
T ss_pred EEEeC----CCCHHHHHHHHHh-CcEEEECC-----cchHHHHHHcCCCEEEccCCCCcchhhhCC-ceEEeCC-CHHHH
Confidence 99988 5556789999995 99999999 4458999999999999986 9999999888 9999987 99999
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 003962 697 AEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGV 744 (783)
Q Consensus 697 AeaI~~~l~~l~~dp~~~~~ms~~a~~~v~~~ysw~~~a~~ll~ly~~ 744 (783)
+++|.+++ +|++.+++|++++++.. +.|+|+.+++.+.++|..
T Consensus 333 a~~i~~ll----~d~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~ 375 (384)
T 1vgv_A 333 VEEVTRLL----KDENEYQAMSRAHNPYG-DGQACSRILEALKNNRIS 375 (384)
T ss_dssp HHHHHHHH----HCHHHHHHHHSSCCTTC-CSCHHHHHHHHHHHTCCC
T ss_pred HHHHHHHH----hChHHHhhhhhccCCCc-CCCHHHHHHHHHHHHHHh
Confidence 99997766 79999999999998775 789999999999887643
No 23
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.95 E-value=6.2e-27 Score=234.20 Aligned_cols=192 Identities=17% Similarity=0.205 Sum_probs=161.5
Q ss_pred ecCCccCCCCC--CCchHHHhhccCchhhHHhhcChhhhhhhhccccCCCCcEEEEEeccc-CCCCHHHHHHHHHHhH--
Q 003962 500 VSPGADMSIYF--PYTEEKRRLKSFHPEIEELLYSDVENKEHLCVLKDRNKPILFTMARLD-RVKNLTGLVEWYGKNA-- 574 (783)
Q Consensus 500 IpnGvD~~~f~--p~~~~~~r~~~~~~~~~~~l~~~~~~~~~~gll~~~~k~iIl~vGRL~-~~Kgl~~LieA~~~l~-- 574 (783)
||||+|.+.|. |....... .....++.+|+ + ++++|+|+||+. +.||++.+++++..+.
T Consensus 2 ipngvd~~~f~~~~~~~~~~~-------------~~~~~r~~~~~--~-~~~~i~~~G~~~~~~K~~~~li~a~~~l~~~ 65 (200)
T 2bfw_A 2 SHNGIDCSFWNESYLTGSRDE-------------RKKSLLSKFGM--D-EGVTFMFIGRFDRGQKGVDVLLKAIEILSSK 65 (200)
T ss_dssp ---CCCTTTSSGGGSCSCHHH-------------HHHHHHHHTTC--C-SCEEEEEESCBCSSSSCHHHHHHHHHHHTTS
T ss_pred CCCccChhhccccccccchhh-------------HHHHHHHHcCC--C-CCCEEEEeeccccccCCHHHHHHHHHHHHhh
Confidence 79999999998 76420000 00123456776 3 456999999999 9999999999999997
Q ss_pred ccCCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEE-ccCCCCcCChHHHHHHHHccCcEEEeCCCCCCC
Q 003962 575 KLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRW-ISSQMNRVRNGELYRYICDTKGAFVQPALYEAF 653 (783)
Q Consensus 575 ~~~~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~f-lG~~~~~~~~~el~~~ia~aadvfV~PS~~E~f 653 (783)
+..++++|+|+|+++. ...+.+++++++++ +|+| +| .++.+++..+++. +|++|+||.+|+|
T Consensus 66 ~~~~~~~l~i~G~~~~---------~~~~~l~~~~~~~~---~v~~~~g----~~~~~~~~~~~~~-ad~~l~ps~~e~~ 128 (200)
T 2bfw_A 66 KEFQEMRFIIIGKGDP---------ELEGWARSLEEKHG---NVKVITE----MLSREFVRELYGS-VDFVIIPSYFEPF 128 (200)
T ss_dssp GGGGGEEEEEECCBCH---------HHHHHHHHHHHHCT---TEEEECS----CCCHHHHHHHHTT-CSEEEECCSCCSS
T ss_pred ccCCCeEEEEECCCCh---------HHHHHHHHHHHhcC---CEEEEec----cCCHHHHHHHHHH-CCEEEECCCCCCc
Confidence 6778999999999852 24567888888876 8999 99 7778899999996 9999999999999
Q ss_pred cHHHHHHHHcCCcEEEcCccccccccccCceEEEECCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHHhCC
Q 003962 654 GLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKA-DPSYWDKISLGGLKRIEEKYT 730 (783)
Q Consensus 654 GltvlEAMa~GlPVVat~~GG~~EiI~dg~~G~li~p~d~e~lAeaI~~~l~~l~~-dp~~~~~ms~~a~~~v~~~ys 730 (783)
|++++|||+||+|||+|+.||..|++ ++.+|++++++|+++++++|.+++ + |++.+++|++++++++.+ ||
T Consensus 129 ~~~~~Ea~a~G~PvI~~~~~~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~----~~~~~~~~~~~~~a~~~~~~-fs 200 (200)
T 2bfw_A 129 GLVALEAMCLGAIPIASAVGGLRDII-TNETGILVKAGDPGELANAILKAL----ELSRSDLSKFRENCKKRAMS-FS 200 (200)
T ss_dssp CHHHHHHHHTTCEEEEESCHHHHHHC-CTTTCEEECTTCHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHHH-TC
T ss_pred cHHHHHHHHCCCCEEEeCCCChHHHc-CCCceEEecCCCHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHh-cC
Confidence 99999999999999999999999999 999999999999999999997766 7 999999999999999977 86
No 24
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.93 E-value=1.4e-25 Score=217.84 Aligned_cols=163 Identities=15% Similarity=0.195 Sum_probs=140.8
Q ss_pred CcEEEEEecccCCCCHHHHHHHHHHhHccCCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCc
Q 003962 548 KPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNR 627 (783)
Q Consensus 548 k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~ 627 (783)
+++|+|+||+.+.||++.+++|+.+++ ..++++|+|+|+|+. .+.++++++++++ +|.| | .
T Consensus 2 ~~~i~~~G~~~~~Kg~~~li~a~~~l~-~~~~~~l~i~G~g~~-----------~~~~~~~~~~~~~--~v~~-g----~ 62 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKNQSVLIKAVALSK-YKQDIVLLLKGKGPD-----------EKKIKLLAQKLGV--KAEF-G----F 62 (166)
T ss_dssp CEEEEEESCCSTTTTHHHHHHHHHTCT-TGGGEEEEEECCSTT-----------HHHHHHHHHHHTC--EEEC-C----C
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHhc-cCCCeEEEEEeCCcc-----------HHHHHHHHHHcCC--eEEE-e----e
Confidence 468999999999999999999999985 348999999999865 3678888999887 8999 9 7
Q ss_pred CChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcCC-cEEE-cCccccccccccCceEEEECCCCHHHHHHHHHHHHH
Q 003962 628 VRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGL-PTFA-TCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFE 705 (783)
Q Consensus 628 ~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~Gl-PVVa-t~~GG~~EiI~dg~~G~li~p~d~e~lAeaI~~~l~ 705 (783)
++.+++..+++. +|++|+||.+|+||++++|||+||+ |||+ ++.||..+++.++.+ +++++|+++++++|.+++
T Consensus 63 ~~~~~~~~~~~~-adv~v~ps~~e~~~~~~~Eama~G~vPvi~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~i~~l~- 138 (166)
T 3qhp_A 63 VNSNELLEILKT-CTLYVHAANVESEAIACLEAISVGIVPVIANSPLSATRQFALDERS--LFEPNNAKDLSAKIDWWL- 138 (166)
T ss_dssp CCHHHHHHHHTT-CSEEEECCCSCCCCHHHHHHHHTTCCEEEECCTTCGGGGGCSSGGG--EECTTCHHHHHHHHHHHH-
T ss_pred cCHHHHHHHHHh-CCEEEECCcccCccHHHHHHHhcCCCcEEeeCCCCchhhhccCCce--EEcCCCHHHHHHHHHHHH-
Confidence 778999999996 9999999999999999999999998 9999 578999999988755 788999999999997766
Q ss_pred HhhCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Q 003962 706 KCKADPSYWDKISLGGLKRIEEKYTWKIYSQR 737 (783)
Q Consensus 706 ~l~~dp~~~~~ms~~a~~~v~~~ysw~~~a~~ 737 (783)
.|++.+++|++++++.+ ++|||+.++++
T Consensus 139 ---~~~~~~~~~~~~~~~~~-~~~s~~~~~~~ 166 (166)
T 3qhp_A 139 ---ENKLERERMQNEYAKSA-LNYTLENSVIQ 166 (166)
T ss_dssp ---HCHHHHHHHHHHHHHHH-HHHC-------
T ss_pred ---hCHHHHHHHHHHHHHHH-HHCChhhhhcC
Confidence 79999999999999998 89999998764
No 25
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.93 E-value=1.6e-24 Score=246.29 Aligned_cols=321 Identities=13% Similarity=0.060 Sum_probs=223.2
Q ss_pred HHHHHHHHcC-CCceEEEEcCCCchHHHHHHHHh-cCCcEEEEecCCCccCCCCCchhhhhccccccccchhhHhHHhhh
Q 003962 372 VAVEIAKELQ-GKPDLIIGNYSDGNIVASLLAHK-LGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMN 449 (783)
Q Consensus 372 ~~~~l~~~l~-~~pDIIh~h~~~~~lva~llar~-lgvp~v~t~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~~a~~ 449 (783)
....+....+ ..-|+|..|.+...+++.++.++ .+.++.+..|.-. |.+.+ |..+-.. +...-...|-
T Consensus 137 fA~~i~~~~~~~~~D~VwVhDYhL~llp~~lR~~~~~~~igfFlHiPf----Ps~e~-f~~Lp~~-----~r~ell~gll 206 (496)
T 3t5t_A 137 FADAILKSSAQSADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIPW----PSADY-WRILPKE-----IRTGILHGML 206 (496)
T ss_dssp HHHHHHHHTTTCSSCEEEEESGGGTTHHHHHHHHCTTSCEEEECCSCC----CCHHH-HTTSCHH-----HHHHHHHHHT
T ss_pred HHHHHHHHhccCCCCEEEEeCccHhHHHHHHHhhCCCCeEEEEEcCCC----CCHHH-HhhCcHh-----HHHHHHHHHH
Confidence 3334444443 35689999998876777777654 4689999999742 32222 2111100 0111234688
Q ss_pred cCCEEEcCCHHHHhhccccccccccccccccccceee--eccCCCC--CCcEEEecCCccCCCCCCCchHHHhhccCchh
Q 003962 450 HTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRV--VHGIDVF--DPKFNIVSPGADMSIYFPYTEEKRRLKSFHPE 525 (783)
Q Consensus 450 ~AD~IIt~S~~~~~~~~~~v~qy~~~~~f~~p~l~~v--~~gi~~~--~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~ 525 (783)
.+|.|...|+..+..+.+.+.... |++... ..++... ..++.++|+|||.+.|.+.... .+
T Consensus 207 ~~DligF~t~~y~~~Fl~~~~r~l-------~g~~~~~~~~~v~~~gr~v~v~viP~GID~~~f~~~~~~-~~------- 271 (496)
T 3t5t_A 207 PATTIGFFADRWCRNFLESVADLL-------PDARIDREAMTVEWRGHRTRLRTMPLGYSPLTLDGRNPQ-LP------- 271 (496)
T ss_dssp TSSEEEESSHHHHHHHHHHHHHHC-------TTCEEETTTTEEEETTEEEEEEECCCCBCGGGC----CC-CC-------
T ss_pred hCCEEEEecHHHHHHHHHHHHHHh-------cCCcccccCCeEEECCEEEEEEEeccEeCHHHhchhhHH-HH-------
Confidence 999999999987765433322110 000000 0011111 2367899999999998765321 00
Q ss_pred hHHhhcChhhhhhhhccccCCCCcEEEEEecccCCCCHHHHHHHHHHhHccCCC---eEEEEEeCCCCCCCccHHHHHHH
Q 003962 526 IEELLYSDVENKEHLCVLKDRNKPILFTMARLDRVKNLTGLVEWYGKNAKLREL---VNLVVVGGDRRKESKDLEEQAEM 602 (783)
Q Consensus 526 ~~~~l~~~~~~~~~~gll~~~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~---~~LvIVG~g~~~~~~~~ee~~~~ 602 (783)
...++.+| ++++|+++||+++.||+..+++|+ ++.+.+|+ +.|++||..... ...+..+..
T Consensus 272 --------~~lr~~~~-----~~~lIl~VgRLd~~KGi~~lL~Af-~ll~~~P~~~~v~Lv~Vg~psr~--~~~~y~~l~ 335 (496)
T 3t5t_A 272 --------EGIEEWAD-----GHRLVVHSGRTDPIKNAERAVRAF-VLAARGGGLEKTRMLVRMNPNRL--YVPANADYV 335 (496)
T ss_dssp --------TTHHHHHT-----TSEEEEEEEESSGGGCHHHHHHHH-HHHHHTSSCTTEEEEEEEECCCT--TSHHHHHHH
T ss_pred --------HHHHHHhC-----CceEEEEcccCccccCHHHHHHHH-HHHHhCcccceEEEEEEECCCCC--CchHHHHHH
Confidence 12233343 578999999999999999999999 88877775 568888864321 112334455
Q ss_pred HHHHHHHHHcCCC---CcEEEccCCCCcCChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcC---CcEEEcCccccc
Q 003962 603 KKMYSLIDQYKLN---GQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCG---LPTFATCKGGPA 676 (783)
Q Consensus 603 ~~l~~li~~~~L~---~~V~flG~~~~~~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~G---lPVVat~~GG~~ 676 (783)
+++++++.+.+.. ..|+|+| .++.+++..+|+. ||+||+||.+||||++.+|||||| .|+|+|..+|.+
T Consensus 336 ~~l~~lv~~in~~~g~~~V~f~g----~v~~~el~aly~~-ADv~vv~SlrEGfgLv~~EamA~~~~~g~lVlSe~aGa~ 410 (496)
T 3t5t_A 336 HRVETAVAEANAELGSDTVRIDN----DNDVNHTIACFRR-ADLLIFNSTVDGQNLSTFEAPLVNERDADVILSETCGAA 410 (496)
T ss_dssp HHHHHHHHHHHHHHCTTSEEEEE----CCCHHHHHHHHHH-CSEEEECCSSBSCCSHHHHHHHHCSSCCEEEEETTBTTH
T ss_pred HHHHHHHHHhccccCCcCEEEeC----CCCHHHHHHHHHh-ccEEEECcccccCChhHHHHHHhCCCCCCEEEeCCCCCH
Confidence 6666666655321 1799999 6788999999995 999999999999999999999997 899999999998
Q ss_pred cccccCceEEEECCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 003962 677 EIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGV 744 (783)
Q Consensus 677 EiI~dg~~G~li~p~d~e~lAeaI~~~l~~l~~dp~~~~~ms~~a~~~v~~~ysw~~~a~~ll~ly~~ 744 (783)
+.+ +.+|++++|.|++++|++|.++++ .+++.++++.+++++++ ..+|+...++.+++-...
T Consensus 411 ~~l--~~~allVnP~D~~~lA~AI~~aL~---m~~~er~~r~~~~~~~V-~~~d~~~W~~~fl~~L~~ 472 (496)
T 3t5t_A 411 EVL--GEYCRSVNPFDLVEQAEAISAALA---AGPRQRAEAAARRRDAA-RPWTLEAWVQAQLDGLAA 472 (496)
T ss_dssp HHH--GGGSEEECTTBHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHH-TTCBHHHHHHHHHHHHHH
T ss_pred HHh--CCCEEEECCCCHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHhh
Confidence 888 347999999999999999988774 56788999999999998 789999999999876543
No 26
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.91 E-value=1.2e-23 Score=230.97 Aligned_cols=269 Identities=12% Similarity=0.065 Sum_probs=181.4
Q ss_pred CCceEEEEcCCCc-hHHHHHHHHhcCCcEEEEecCCCccCCCCCchhhhhccccccccchhhHhHHhhhcCCEEEcCCHH
Q 003962 382 GKPDLIIGNYSDG-NIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQ 460 (783)
Q Consensus 382 ~~pDIIh~h~~~~-~lva~llar~lgvp~v~t~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~~a~~~AD~IIt~S~~ 460 (783)
.+||+||+|.... ++.+.++++..|+|++++.|+... +. .+..+ . .........+.+|.++++|..
T Consensus 90 ~~pDvv~~~~~~~~~~~~~~~a~~~~ip~v~~~~~~~~--~~----~~~~~------~-~~~~~~~~~~~~~~~~~~s~~ 156 (376)
T 1v4v_A 90 MGADYVLVHGDTLTTFAVAWAAFLEGIPVGHVEAGLRS--GN----LKEPF------P-EEANRRLTDVLTDLDFAPTPL 156 (376)
T ss_dssp TTCSEEEEESSCHHHHHHHHHHHHTTCCEEEETCCCCC--SC----TTSST------T-HHHHHHHHHHHCSEEEESSHH
T ss_pred cCCCEEEEeCChHHHHHHHHHHHHhCCCEEEEeCCCcc--cc----ccCCC------c-hHHHHHHHHHHhceeeCCCHH
Confidence 4799999987643 455677888899998754443311 00 00000 0 001123445679999999987
Q ss_pred HHhhccccccccccccccccccceeeeccCCCCCCcEEEecCCc-cCCCCCCCchHHHhhccCchhhHHhhcChhhhhhh
Q 003962 461 EIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGA-DMSIYFPYTEEKRRLKSFHPEIEELLYSDVENKEH 539 (783)
Q Consensus 461 ~~~~~~~~v~qy~~~~~f~~p~l~~v~~gi~~~~~k~~VIpnGv-D~~~f~p~~~~~~r~~~~~~~~~~~l~~~~~~~~~ 539 (783)
..+.+.+ .|++ +.|+.+++|++ |...+.+ .+ .. .++.
T Consensus 157 ~~~~l~~--------------------~g~~--~~ki~vi~n~~~d~~~~~~-----~~-~~--------------~~~~ 194 (376)
T 1v4v_A 157 AKANLLK--------------------EGKR--EEGILVTGQTGVDAVLLAA-----KL-GR--------------LPEG 194 (376)
T ss_dssp HHHHHHT--------------------TTCC--GGGEEECCCHHHHHHHHHH-----HH-CC--------------CCTT
T ss_pred HHHHHHH--------------------cCCC--cceEEEECCchHHHHhhhh-----hh-hH--------------HHHh
Confidence 7653221 1443 56899999965 4221100 00 00 0111
Q ss_pred hccccCCCCcEEEEEecccCCCCHHHHHHHHHHhHccCCCeEEEEE-eCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcE
Q 003962 540 LCVLKDRNKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVV-GGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQF 618 (783)
Q Consensus 540 ~gll~~~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIV-G~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V 618 (783)
+ ++++.+++++||+...||++.+++|+.++.+..|+++++++ |+++ ...+.+++++. ..++|
T Consensus 195 ~----~~~~~vl~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~lv~~~g~~~----------~~~~~l~~~~~---~~~~v 257 (376)
T 1v4v_A 195 L----PEGPYVTVTMHRRENWPLLSDLAQALKRVAEAFPHLTFVYPVHLNP----------VVREAVFPVLK---GVRNF 257 (376)
T ss_dssp C----CSSCEEEECCCCGGGGGGHHHHHHHHHHHHHHCTTSEEEEECCSCH----------HHHHHHHHHHT---TCTTE
T ss_pred c----CCCCEEEEEeCcccchHHHHHHHHHHHHHHhhCCCeEEEEECCCCH----------HHHHHHHHHhc---cCCCE
Confidence 1 23345677899998888999999999999887888999886 6552 12344555443 24689
Q ss_pred EEccCCCCcCChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcCCcEEEc-CccccccccccCceEEEECCCCHHHHH
Q 003962 619 RWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFAT-CKGGPAEIIVNGKSGYHIDPYHGEQAA 697 (783)
Q Consensus 619 ~flG~~~~~~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~GlPVVat-~~GG~~EiI~dg~~G~li~p~d~e~lA 697 (783)
+|+| .+...++..+|+. +|++|.|| | |+ ++|||+||+|||++ +.||..+++.+| +|++++ .|+++++
T Consensus 258 ~~~g----~~g~~~~~~~~~~-ad~~v~~S--~--g~-~lEA~a~G~PvI~~~~~~~~~~~~~~g-~g~lv~-~d~~~la 325 (376)
T 1v4v_A 258 VLLD----PLEYGSMAALMRA-SLLLVTDS--G--GL-QEEGAALGVPVVVLRNVTERPEGLKAG-ILKLAG-TDPEGVY 325 (376)
T ss_dssp EEEC----CCCHHHHHHHHHT-EEEEEESC--H--HH-HHHHHHTTCCEEECSSSCSCHHHHHHT-SEEECC-SCHHHHH
T ss_pred EEEC----CCCHHHHHHHHHh-CcEEEECC--c--CH-HHHHHHcCCCEEeccCCCcchhhhcCC-ceEECC-CCHHHHH
Confidence 9998 4555688888885 99999999 2 44 88999999999997 678999988666 899986 4999999
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 003962 698 EILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTG 743 (783)
Q Consensus 698 eaI~~~l~~l~~dp~~~~~ms~~a~~~v~~~ysw~~~a~~ll~ly~ 743 (783)
++|.+++ +|++.+++|++++ ..|.|...++++.+++.
T Consensus 326 ~~i~~ll----~d~~~~~~~~~~~-----~~~~~~~~~~~i~~~i~ 362 (376)
T 1v4v_A 326 RVVKGLL----ENPEELSRMRKAK-----NPYGDGKAGLMVARGVA 362 (376)
T ss_dssp HHHHHHH----TCHHHHHHHHHSC-----CSSCCSCHHHHHHHHHH
T ss_pred HHHHHHH----hChHhhhhhcccC-----CCCCCChHHHHHHHHHH
Confidence 9997666 8999999998643 44666566666665543
No 27
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.89 E-value=3.4e-23 Score=204.54 Aligned_cols=152 Identities=20% Similarity=0.233 Sum_probs=133.6
Q ss_pred CCCCcEEEEEecccCCCCHHHHHHHHHHhHccCCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHH--HcCCCCcEEEcc
Q 003962 545 DRNKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLID--QYKLNGQFRWIS 622 (783)
Q Consensus 545 ~~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~--~~~L~~~V~flG 622 (783)
+.++++|+|+||+.+.||++.+++++.++ ++++|+|+|+++.. ++++++++ ++++.++|.|+|
T Consensus 20 ~~~~~~i~~~G~~~~~Kg~~~li~a~~~l----~~~~l~i~G~~~~~-----------~~l~~~~~~~~~~l~~~v~~~g 84 (177)
T 2f9f_A 20 KCYGDFWLSVNRIYPEKRIELQLEVFKKL----QDEKLYIVGWFSKG-----------DHAERYARKIMKIAPDNVKFLG 84 (177)
T ss_dssp CCCCSCEEEECCSSGGGTHHHHHHHHHHC----TTSCEEEEBCCCTT-----------STHHHHHHHHHHHSCTTEEEEE
T ss_pred CCCCCEEEEEeccccccCHHHHHHHHHhC----CCcEEEEEecCccH-----------HHHHHHHHhhhcccCCcEEEeC
Confidence 66788999999999999999999999987 67999999998763 35667777 778889999999
Q ss_pred CCCCcCChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcCCcEEEcCccccccccccCceEEEECCCCHHHHHHHHHH
Q 003962 623 SQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVD 702 (783)
Q Consensus 623 ~~~~~~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~GlPVVat~~GG~~EiI~dg~~G~li~p~d~e~lAeaI~~ 702 (783)
.++.+++..+++. +|++|+||..|+||++++|||+||+|||+|+.|+..|++.++.+|+++ +.|+++++++|.+
T Consensus 85 ----~~~~~e~~~~~~~-adi~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~-~~d~~~l~~~i~~ 158 (177)
T 2f9f_A 85 ----SVSEEELIDLYSR-CKGLLCTAKDEDFGLTPIEAMASGKPVIAVNEGGFKETVINEKTGYLV-NADVNEIIDAMKK 158 (177)
T ss_dssp ----SCCHHHHHHHHHH-CSEEEECCSSCCSCHHHHHHHHTTCCEEEESSHHHHHHCCBTTTEEEE-CSCHHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHh-CCEEEeCCCcCCCChHHHHHHHcCCcEEEeCCCCHHHHhcCCCccEEe-CCCHHHHHHHHHH
Confidence 7788999999996 999999999999999999999999999999999999999999999999 9999999999977
Q ss_pred HHHHhhCCHHH-HHHHHHHH
Q 003962 703 FFEKCKADPSY-WDKISLGG 721 (783)
Q Consensus 703 ~l~~l~~dp~~-~~~ms~~a 721 (783)
++ +|++. ++++++++
T Consensus 159 l~----~~~~~~~~~~~~~a 174 (177)
T 2f9f_A 159 VS----KNPDKFKKDCFRRA 174 (177)
T ss_dssp HH----HCTTTTHHHHHHHH
T ss_pred HH----hCHHHHHHHHHHHH
Confidence 66 67764 44444333
No 28
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.89 E-value=1.5e-22 Score=224.19 Aligned_cols=207 Identities=11% Similarity=0.049 Sum_probs=158.4
Q ss_pred HHhhhcCCEEEcCCHHHHhhccccccccccccccccccceeeeccCCCCCCcEEEecCCccCCCCCCCchHHHhhccCch
Q 003962 445 LIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLKSFHP 524 (783)
Q Consensus 445 ~~a~~~AD~IIt~S~~~~~~~~~~v~qy~~~~~f~~p~l~~v~~gi~~~~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~ 524 (783)
+..++.+|.|++.|+..++.+.+. |+ + ++.|++|+. |.+.... + .
T Consensus 148 ~~~~~~~d~ii~~S~~~~~~l~~~--------------------g~---~-ki~vi~n~~----f~~~~~~--~-~---- 192 (374)
T 2xci_A 148 KILSKKFDLIIMRTQEDVEKFKTF--------------------GA---K-RVFSCGNLK----FICQKGK--G-I---- 192 (374)
T ss_dssp HHHHTTCSEEEESCHHHHHHHHTT--------------------TC---C-SEEECCCGG----GCCCCCS--C-C----
T ss_pred HHHHHhCCEEEECCHHHHHHHHHc--------------------CC---C-eEEEcCCCc----cCCCcCh--h-h----
Confidence 346789999999999887643221 33 3 889999973 2221100 0 0
Q ss_pred hhHHhhcChhhhhhhhccccCCCCcEEEEEecccCCCCHHHHHHHHHHhHccCCCeEEEEEeCCCCCCCccHHHHHHHHH
Q 003962 525 EIEELLYSDVENKEHLCVLKDRNKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKK 604 (783)
Q Consensus 525 ~~~~~l~~~~~~~~~~gll~~~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~~ee~~~~~~ 604 (783)
.-.++++++.|+ ..||++.+++|+.++.+..|+++|+|+|+|+.+ .++
T Consensus 193 --------------------~l~~~vi~~~~~--~~k~~~~ll~A~~~l~~~~p~~~lvivG~g~~~----------~~~ 240 (374)
T 2xci_A 193 --------------------KLKGEFIVAGSI--HTGEVEIILKAFKEIKKTYSSLKLILVPRHIEN----------AKI 240 (374)
T ss_dssp --------------------CCSSCEEEEEEE--CGGGHHHHHHHHHHHHTTCTTCEEEEEESSGGG----------HHH
T ss_pred --------------------hhcCCEEEEEeC--CCchHHHHHHHHHHHHhhCCCcEEEEECCCHHH----------HHH
Confidence 011256666665 468999999999999988899999999998641 246
Q ss_pred HHHHHHHcCCC--------CcEEEccCCCCcCChHHHHHHHHccCcEEEeCCC-CCCCcHHHHHHHHcCCcEEEc-Cccc
Q 003962 605 MYSLIDQYKLN--------GQFRWISSQMNRVRNGELYRYICDTKGAFVQPAL-YEAFGLTVVEAMTCGLPTFAT-CKGG 674 (783)
Q Consensus 605 l~~li~~~~L~--------~~V~flG~~~~~~~~~el~~~ia~aadvfV~PS~-~E~fGltvlEAMa~GlPVVat-~~GG 674 (783)
++++++++++. .+|.+.|.+ +++..+|+. +|++++||. .|++|++++||||||+|||++ +.+|
T Consensus 241 l~~~~~~~gl~~~~~~~~~~~v~~~~~~------~dl~~~y~~-aDv~vl~ss~~e~gg~~~lEAmA~G~PVI~~~~~~~ 313 (374)
T 2xci_A 241 FEKKARDFGFKTSFFENLEGDVILVDRF------GILKELYPV-GKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHK 313 (374)
T ss_dssp HHHHHHHTTCCEEETTCCCSSEEECCSS------SCHHHHGGG-EEEEEECSSSSSSCCCCCHHHHTTTCCEEECSCCTT
T ss_pred HHHHHHHCCCceEEecCCCCcEEEECCH------HHHHHHHHh-CCEEEECCcccCCCCcCHHHHHHhCCCEEECCCccC
Confidence 78888888876 468887732 468888885 999888765 477899999999999999985 7899
Q ss_pred cccccccC-ceEEEECCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhCC
Q 003962 675 PAEIIVNG-KSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYT 730 (783)
Q Consensus 675 ~~EiI~dg-~~G~li~p~d~e~lAeaI~~~l~~l~~dp~~~~~ms~~a~~~v~~~ys 730 (783)
+.|++.++ .+|+++.++|++++|++|.+++ +| +.+++|+++|+++++++++
T Consensus 314 ~~e~~~~~~~~G~l~~~~d~~~La~ai~~ll----~d-~~r~~mg~~ar~~~~~~~g 365 (374)
T 2xci_A 314 VNDLKEFLEKEGAGFEVKNETELVTKLTELL----SV-KKEIKVEEKSREIKGCYLE 365 (374)
T ss_dssp SHHHHHHHHHTTCEEECCSHHHHHHHHHHHH----HS-CCCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHCCCEEEeCCHHHHHHHHHHHH----hH-HHHHHHHHHHHHHHHhccc
Confidence 99988764 5788888999999999997766 68 8999999999999966543
No 29
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.82 E-value=3.8e-19 Score=197.25 Aligned_cols=161 Identities=14% Similarity=0.071 Sum_probs=125.7
Q ss_pred CCCcEEEEEecccCCCCHHHHHHHHHHhHccCCCeEEEEEeCCCC-CCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCC
Q 003962 546 RNKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRR-KESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQ 624 (783)
Q Consensus 546 ~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~-~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~ 624 (783)
+.+.++++.|++. .|+...+.+++..+.+. ++++++++++.. . +.+. ++.++|++.|
T Consensus 241 ~~~~vlv~~G~~~-~~~~~~~~~~~~~l~~~--~~~~~~~~g~~~~~-----------~~l~------~~~~~v~~~~-- 298 (412)
T 3otg_A 241 ARPLVYLTLGTSS-GGTVEVLRAAIDGLAGL--DADVLVASGPSLDV-----------SGLG------EVPANVRLES-- 298 (412)
T ss_dssp TSCEEEEECTTTT-CSCHHHHHHHHHHHHTS--SSEEEEECCSSCCC-----------TTCC------CCCTTEEEES--
T ss_pred CCCEEEEEcCCCC-cCcHHHHHHHHHHHHcC--CCEEEEEECCCCCh-----------hhhc------cCCCcEEEeC--
Confidence 3445678889986 78888888888877653 567777766543 1 1111 2567999999
Q ss_pred CCcCChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcCCcEEEcCcc----ccccccccCceEEEECCC--CHHHHHH
Q 003962 625 MNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKG----GPAEIIVNGKSGYHIDPY--HGEQAAE 698 (783)
Q Consensus 625 ~~~~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~GlPVVat~~G----G~~EiI~dg~~G~li~p~--d~e~lAe 698 (783)
+++ +..+++ .+|++|.++- +.+++|||+||+|+|++..+ +.++.+.++..|++++++ |++++++
T Consensus 299 --~~~---~~~~l~-~ad~~v~~~g----~~t~~Ea~a~G~P~v~~p~~~~q~~~~~~v~~~g~g~~~~~~~~~~~~l~~ 368 (412)
T 3otg_A 299 --WVP---QAALLP-HVDLVVHHGG----SGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAGAGDHLLPDNISPDSVSG 368 (412)
T ss_dssp --CCC---HHHHGG-GCSEEEESCC----HHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECCGGGCCHHHHHH
T ss_pred --CCC---HHHHHh-cCcEEEECCc----hHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCcccCCHHHHHH
Confidence 443 556666 5999998753 48999999999999996554 478888888899999987 8999999
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 003962 699 ILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTG 743 (783)
Q Consensus 699 aI~~~l~~l~~dp~~~~~ms~~a~~~v~~~ysw~~~a~~ll~ly~ 743 (783)
+|.+++ +|++.+++|++.+++.. +.++|+.+++.+++++.
T Consensus 369 ai~~ll----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~ 408 (412)
T 3otg_A 369 AAKRLL----AEESYRAGARAVAAEIA-AMPGPDEVVRLLPGFAS 408 (412)
T ss_dssp HHHHHH----HCHHHHHHHHHHHHHHH-HSCCHHHHHTTHHHHHC
T ss_pred HHHHHH----hCHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHhc
Confidence 997666 89999999999998876 77899999999998864
No 30
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=99.82 E-value=3.6e-19 Score=194.52 Aligned_cols=246 Identities=12% Similarity=0.087 Sum_probs=173.0
Q ss_pred CCceEEEEcCCCc---hHHHHHHHH--hcCCcEEEEecCCCccCCCCCchhhhhccccccccchhhHhHHhhhcCCEEEc
Q 003962 382 GKPDLIIGNYSDG---NIVASLLAH--KLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIIT 456 (783)
Q Consensus 382 ~~pDIIh~h~~~~---~lva~llar--~lgvp~v~t~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~~a~~~AD~IIt 456 (783)
.++|+|+.+++.. .+.+.++.+ +.++|+|+.+|++++..+. ...+. ...|...++.||.||+
T Consensus 73 ~~~DvIi~q~P~~~~~~~~~~~~~~lk~~~~k~i~~ihDl~pl~~~---------~~~~~----~~~E~~~y~~aD~Ii~ 139 (339)
T 3rhz_A 73 RHGDVVIFQTPTWNTTEFDEKLMNKLKLYDIKIVLFIHDVVPLMFS---------GNFYL----MDRTIAYYNKADVVVA 139 (339)
T ss_dssp CTTCEEEEEECCSSCHHHHHHHHHHHTTSSCEEEEEESCCHHHHCG---------GGGGG----HHHHHHHHTTCSEEEE
T ss_pred CCCCEEEEeCCCcchhhHHHHHHHHHHhcCCEEEEEecccHHhhCc---------cchhh----HHHHHHHHHHCCEEEE
Confidence 5899999888764 233445554 3489999999998653321 11111 1257889999999999
Q ss_pred CCHHHHhhccccccccccccccccccceeeeccCCCCCCcEEEecCCccCCCCCCCchHHHhhccCchhhHHhhcChhhh
Q 003962 457 STFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLKSFHPEIEELLYSDVEN 536 (783)
Q Consensus 457 ~S~~~~~~~~~~v~qy~~~~~f~~p~l~~v~~gi~~~~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~~~~~l~~~~~~ 536 (783)
.|+...+.+.+ +|++ ..++.++++. |.. .+..
T Consensus 140 ~S~~~~~~l~~--------------------~G~~--~~ki~~~~~~-~~~--~~~~----------------------- 171 (339)
T 3rhz_A 140 PSQKMIDKLRD--------------------FGMN--VSKTVVQGMW-DHP--TQAP----------------------- 171 (339)
T ss_dssp SCHHHHHHHHH--------------------TTCC--CSEEEECCSC-CCC--CCCC-----------------------
T ss_pred CCHHHHHHHHH--------------------cCCC--cCceeecCCC-Ccc--Cccc-----------------------
Confidence 99988764322 2443 4566444332 211 0100
Q ss_pred hhhhccccCCCCcEEEEEecccCCCCHHHHHHHHHHhHccCCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCC
Q 003962 537 KEHLCVLKDRNKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNG 616 (783)
Q Consensus 537 ~~~~gll~~~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~ 616 (783)
.. .+.+++.|+|+|+++....+. ...++++|+|+|+|+.+ .++
T Consensus 172 ---~~--~~~~~~~i~yaG~l~k~~~L~----------~l~~~~~f~ivG~G~~~---------------------~l~- 214 (339)
T 3rhz_A 172 ---MF--PAGLKREIHFPGNPERFSFVK----------EWKYDIPLKVYTWQNVE---------------------LPQ- 214 (339)
T ss_dssp ---CC--CCEEEEEEEECSCTTTCGGGG----------GCCCSSCEEEEESCCCC---------------------CCT-
T ss_pred ---cc--ccCCCcEEEEeCCcchhhHHH----------hCCCCCeEEEEeCCccc---------------------CcC-
Confidence 00 033567899999999643322 22478999999999751 244
Q ss_pred cEEEccCCCCcCChHHHHHHHHccCcEEEeCCC-------CCCCcHHHHHHHHcCCcEEEcCccccccccccCceEEEEC
Q 003962 617 QFRWISSQMNRVRNGELYRYICDTKGAFVQPAL-------YEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHID 689 (783)
Q Consensus 617 ~V~flG~~~~~~~~~el~~~ia~aadvfV~PS~-------~E~fGltvlEAMa~GlPVVat~~GG~~EiI~dg~~G~li~ 689 (783)
+|.|+| +++.+|+..+++. +|+.+.+.. ...+|.+++||||||+|||+++.|+.+++|.++.+|+.++
T Consensus 215 nV~f~G----~~~~~el~~~l~~-~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~~~~~~~~v~~~~~G~~~~ 289 (339)
T 3rhz_A 215 NVHKIN----YRPDEQLLMEMSQ-GGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQEGIANQELIENNGLGWIVK 289 (339)
T ss_dssp TEEEEE----CCCHHHHHHHHHT-EEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEETTCTTTHHHHHHTCEEEES
T ss_pred CEEEeC----CCCHHHHHHHHHh-CCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEccChhHHHHHHhCCeEEEeC
Confidence 899999 8889999999985 667666511 1246899999999999999999999999999999999997
Q ss_pred CCCHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 003962 690 PYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLL 739 (783)
Q Consensus 690 p~d~e~lAeaI~~~l~~l~~dp~~~~~ms~~a~~~v~~~ysw~~~a~~ll 739 (783)
+.++++++|.. -+++.+++|++++++.. +.++|..++++.+
T Consensus 290 --~~~e~~~~i~~------l~~~~~~~m~~na~~~a-~~~~~~~f~k~~l 330 (339)
T 3rhz_A 290 --DVEEAIMKVKN------VNEDEYIELVKNVRSFN-PILRKGFFTRRLL 330 (339)
T ss_dssp --SHHHHHHHHHH------CCHHHHHHHHHHHHHHT-HHHHTTHHHHHHH
T ss_pred --CHHHHHHHHHH------hCHHHHHHHHHHHHHHH-HHhhccHHHHHHH
Confidence 68888888854 25677999999999875 5566666665554
No 31
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.78 E-value=7.5e-18 Score=188.43 Aligned_cols=162 Identities=12% Similarity=0.037 Sum_probs=118.2
Q ss_pred CCCcEEEEEecccCCCCHHHHHHHHHHhHccCCCeEE-EEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCC
Q 003962 546 RNKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNL-VVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQ 624 (783)
Q Consensus 546 ~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~L-vIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~ 624 (783)
+++.+++++|++. .++...+.+++..+.+. +++++ +++|+++.. +.+ + .+.++|.+.|
T Consensus 231 ~~~~v~v~~Gs~~-~~~~~~~~~~~~~l~~~-~~~~~~~~~G~~~~~-----------~~l----~--~~~~~v~~~~-- 289 (430)
T 2iyf_A 231 AEKVVLVSLGSAF-TKQPAFYRECVRAFGNL-PGWHLVLQIGRKVTP-----------AEL----G--ELPDNVEVHD-- 289 (430)
T ss_dssp CSEEEEEECTTTC-C-CHHHHHHHHHHHTTC-TTEEEEEECC---CG-----------GGG----C--SCCTTEEEES--
T ss_pred CCCeEEEEcCCCC-CCcHHHHHHHHHHHhcC-CCeEEEEEeCCCCCh-----------HHh----c--cCCCCeEEEe--
Confidence 3456788999998 56656655555555432 56787 567877541 111 1 2457899999
Q ss_pred CCcCChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcCCcEEEcCccc----cccccccCceEEEECCC--CHHHHHH
Q 003962 625 MNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGG----PAEIIVNGKSGYHIDPY--HGEQAAE 698 (783)
Q Consensus 625 ~~~~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~GlPVVat~~GG----~~EiI~dg~~G~li~p~--d~e~lAe 698 (783)
+++.. .+++ .+|++|..+- +++++|||+||+|+|++..++ .++.+.+...|+.++++ |++++++
T Consensus 290 --~~~~~---~~l~-~ad~~v~~~G----~~t~~Ea~~~G~P~i~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~ 359 (430)
T 2iyf_A 290 --WVPQL---AILR-QADLFVTHAG----AGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLLRE 359 (430)
T ss_dssp --SCCHH---HHHT-TCSEEEECCC----HHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCCC-CCHHHHHH
T ss_pred --cCCHH---HHhh-ccCEEEECCC----ccHHHHHHHhCCCEEECCCccchHHHHHHHHHcCCEEEcCCCCCCHHHHHH
Confidence 44444 4566 5999998652 379999999999999997765 46667777799999877 8899999
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 003962 699 ILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTG 743 (783)
Q Consensus 699 aI~~~l~~l~~dp~~~~~ms~~a~~~v~~~ysw~~~a~~ll~ly~ 743 (783)
+|.+++ +|++.++++++.+++.. +.++++.+++.++++++
T Consensus 360 ~i~~ll----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~ 399 (430)
T 2iyf_A 360 TALALV----DDPEVARRLRRIQAEMA-QEGGTRRAADLIEAELP 399 (430)
T ss_dssp HHHHHH----HCHHHHHHHHHHHHHHH-HHCHHHHHHHHHHTTSC
T ss_pred HHHHHH----cCHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHhh
Confidence 997766 79999999999988876 56899999999888654
No 32
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.77 E-value=3.5e-17 Score=180.51 Aligned_cols=345 Identities=13% Similarity=0.043 Sum_probs=201.0
Q ss_pred CcceEEEEcccccccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHCCCceeeceeEEeCCCCCCCCCcccceeeee
Q 003962 253 MVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKV 332 (783)
Q Consensus 253 m~~rI~iis~h~~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~GheV~~~i~VvT~~~~~~~g~~~~~~~e~i 332 (783)
|..||+|.+ | .|||-..-.+ .++++|+++||+|. ++|.... .. . .+
T Consensus 1 M~~~i~i~~--G-----------GTgGHi~pal--------ala~~L~~~g~~V~----~vg~~~g----~e----~-~~ 46 (365)
T 3s2u_A 1 MKGNVLIMA--G-----------GTGGHVFPAL--------ACAREFQARGYAVH----WLGTPRG----IE----N-DL 46 (365)
T ss_dssp --CEEEEEC--C-----------SSHHHHHHHH--------HHHHHHHHTTCEEE----EEECSSS----TH----H-HH
T ss_pred CCCcEEEEc--C-----------CCHHHHHHHH--------HHHHHHHhCCCEEE----EEECCch----Hh----h-ch
Confidence 667888764 1 2677544444 67888999999998 8875321 10 0 00
Q ss_pred cCccCeEEEEeccCCCcc-ccccccccccchhhHHHHHHHHHHHHHHHcCCCceEEEEcCCCchHHHHHHHHhcCCcEEE
Q 003962 333 YGTKYSDILRVPFRTEKG-VVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCT 411 (783)
Q Consensus 333 ~~~~~v~Ilrvp~~~~~~-~~~~~isr~~i~~~l~~f~~~~~~~l~~~l~~~pDIIh~h~~~~~lva~llar~lgvp~v~ 411 (783)
-...+..+..+|..+..+ ...+++. ..+..+..+ ..+ .++++. .+||+|++.....+..+.++++.+|+|+++
T Consensus 47 v~~~g~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~-~~~-~~~l~~--~~PDvVi~~g~~~s~p~~laA~~~~iP~vi 120 (365)
T 3s2u_A 47 VPKAGLPLHLIQVSGLRGKGLKSLVK--APLELLKSL-FQA-LRVIRQ--LRPVCVLGLGGYVTGPGGLAARLNGVPLVI 120 (365)
T ss_dssp TGGGTCCEEECC----------------CHHHHHHHH-HHH-HHHHHH--HCCSEEEECSSSTHHHHHHHHHHTTCCEEE
T ss_pred hhhcCCcEEEEECCCcCCCCHHHHHH--HHHHHHHHH-HHH-HHHHHh--cCCCEEEEcCCcchHHHHHHHHHcCCCEEE
Confidence 111244555555443211 0000000 111111121 122 233332 379999998877778888889999999886
Q ss_pred EecCCCccCCCCCchhhhhccccccccchhhHhHHhhhcCCEEEcCCHHHHhhccccccccccccccccccceeeeccCC
Q 003962 412 IAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGID 491 (783)
Q Consensus 412 t~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~~a~~~AD~IIt~S~~~~~~~~~~v~qy~~~~~f~~p~l~~v~~gi~ 491 (783)
.-.+.. + . ...++..+.++.|.+..+...
T Consensus 121 he~n~~----~--G----------------~~nr~l~~~a~~v~~~~~~~~----------------------------- 149 (365)
T 3s2u_A 121 HEQNAV----A--G----------------TANRSLAPIARRVCEAFPDTF----------------------------- 149 (365)
T ss_dssp EECSSS----C--C----------------HHHHHHGGGCSEEEESSTTSS-----------------------------
T ss_pred Eecchh----h--h----------------hHHHhhccccceeeecccccc-----------------------------
Confidence 433211 1 0 012234566787766553210
Q ss_pred CCCCcEEEecCCccCCCCCCCchHHHhhccCchhhHHhhcChhhhhhhhccccCCCCcE-EEEEecccCCCCHHHHHHHH
Q 003962 492 VFDPKFNIVSPGADMSIYFPYTEEKRRLKSFHPEIEELLYSDVENKEHLCVLKDRNKPI-LFTMARLDRVKNLTGLVEWY 570 (783)
Q Consensus 492 ~~~~k~~VIpnGvD~~~f~p~~~~~~r~~~~~~~~~~~l~~~~~~~~~~gll~~~~k~i-Il~vGRL~~~Kgl~~LieA~ 570 (783)
...+|..++.|.+..+.+.+... ..++ +++++. +++.|++...+..+.+.+++
T Consensus 150 ~~~~k~~~~g~pvr~~~~~~~~~------------------------~~~~--~~~~~~ilv~gGs~g~~~~~~~~~~al 203 (365)
T 3s2u_A 150 PASDKRLTTGNPVRGELFLDAHA------------------------RAPL--TGRRVNLLVLGGSLGAEPLNKLLPEAL 203 (365)
T ss_dssp CC---CEECCCCCCGGGCCCTTS------------------------SCCC--TTSCCEEEECCTTTTCSHHHHHHHHHH
T ss_pred cCcCcEEEECCCCchhhccchhh------------------------hccc--CCCCcEEEEECCcCCccccchhhHHHH
Confidence 01456677888877655433211 1233 344554 55557888877778888998
Q ss_pred HHhHccCCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHccCcEEEeCCCC
Q 003962 571 GKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALY 650 (783)
Q Consensus 571 ~~l~~~~~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~aadvfV~PS~~ 650 (783)
..+.... ++.++++++..+ .+.+.+..+..+ .++++.++.. ++..+|+ ++|++|.-+
T Consensus 204 ~~l~~~~-~~~vi~~~G~~~-----------~~~~~~~~~~~~--~~~~v~~f~~------dm~~~l~-~aDlvI~ra-- 260 (365)
T 3s2u_A 204 AQVPLEI-RPAIRHQAGRQH-----------AEITAERYRTVA--VEADVAPFIS------DMAAAYA-WADLVICRA-- 260 (365)
T ss_dssp HTSCTTT-CCEEEEECCTTT-----------HHHHHHHHHHTT--CCCEEESCCS------CHHHHHH-HCSEEEECC--
T ss_pred Hhccccc-ceEEEEecCccc-----------cccccceecccc--cccccccchh------hhhhhhc-cceEEEecC--
Confidence 8876533 345544443322 234444455554 4677888543 4667777 499999754
Q ss_pred CCCcHHHHHHHHcCCcEEEcCcccc--------ccccccCceEEEECCC--CHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 003962 651 EAFGLTVVEAMTCGLPTFATCKGGP--------AEIIVNGKSGYHIDPY--HGEQAAEILVDFFEKCKADPSYWDKISLG 720 (783)
Q Consensus 651 E~fGltvlEAMa~GlPVVat~~GG~--------~EiI~dg~~G~li~p~--d~e~lAeaI~~~l~~l~~dp~~~~~ms~~ 720 (783)
-++|+.|+|++|+|+|....+.. ++.+.+...|.+++.. ++++++++|.+++ .||+.+++|+++
T Consensus 261 --G~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~l~~~G~a~~l~~~~~~~~~L~~~i~~ll----~d~~~~~~m~~~ 334 (365)
T 3s2u_A 261 --GALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLVRSGAGRLLPQKSTGAAELAAQLSEVL----MHPETLRSMADQ 334 (365)
T ss_dssp --CHHHHHHHHHHTCCEEECC-----CCHHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHH----HCTHHHHHHHHH
T ss_pred --CcchHHHHHHhCCCeEEeccCCCCCcHHHHHHHHHHHCCCEEEeecCCCCHHHHHHHHHHHH----CCHHHHHHHHHH
Confidence 37899999999999998766543 2345555578888755 5889999997766 899999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Q 003962 721 GLKRIEEKYTWKIYSQRLLTLTGV 744 (783)
Q Consensus 721 a~~~v~~~ysw~~~a~~ll~ly~~ 744 (783)
+++.. .....+.+++.++++.+.
T Consensus 335 a~~~~-~~~aa~~ia~~i~~larG 357 (365)
T 3s2u_A 335 ARSLA-KPEATRTVVDACLEVARG 357 (365)
T ss_dssp HHHTC-CTTHHHHHHHHHHHHC--
T ss_pred HHhcC-CccHHHHHHHHHHHHHcc
Confidence 98875 455677888888777543
No 33
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.75 E-value=1.9e-18 Score=190.59 Aligned_cols=161 Identities=12% Similarity=0.004 Sum_probs=125.2
Q ss_pred CCcEEEEEecccCCCCH-HHHHHHHHHhHccCCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCC
Q 003962 547 NKPILFTMARLDRVKNL-TGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQM 625 (783)
Q Consensus 547 ~k~iIl~vGRL~~~Kgl-~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~ 625 (783)
.+.+++++|++...|+. ..+++++.+. +..|+++++++|++... +.+. ++.++|++.|
T Consensus 218 ~~~vlv~~G~~~~~~~~~~~~~~~~~~~-~~~p~~~~v~~~~~~~~-----------~~l~------~~~~~v~~~~--- 276 (391)
T 3tsa_A 218 ARRVCICMGRMVLNATGPAPLLRAVAAA-TELPGVEAVIAVPPEHR-----------ALLT------DLPDNARIAE--- 276 (391)
T ss_dssp SEEEEEECCHHHHHHHCSHHHHHHHHHH-HTSTTEEEEEECCGGGG-----------GGCT------TCCTTEEECC---
T ss_pred CCEEEEEcCCCCCcccchHHHHHHHHHh-ccCCCeEEEEEECCcch-----------hhcc------cCCCCEEEec---
Confidence 34567778999775555 7777777777 66778999999987531 1111 3567999999
Q ss_pred CcCChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcCCcEEE----cCccccccccccCceEEEECC----CCHHHHH
Q 003962 626 NRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFA----TCKGGPAEIIVNGKSGYHIDP----YHGEQAA 697 (783)
Q Consensus 626 ~~~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~GlPVVa----t~~GG~~EiI~dg~~G~li~p----~d~e~lA 697 (783)
+++..+++ + ++|++|.. +.+.+++|||+||+|+|+ .+..+..+.+.+...|..+++ .|+++++
T Consensus 277 -~~~~~~ll---~-~ad~~v~~----~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~~~l~ 347 (391)
T 3tsa_A 277 -SVPLNLFL---R-TCELVICA----GGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDHEQFT 347 (391)
T ss_dssp -SCCGGGTG---G-GCSEEEEC----CCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTTSEEECCSHHHHTCHHHHH
T ss_pred -cCCHHHHH---h-hCCEEEeC----CCHHHHHHHHHhCCCEEecCCcccHHHHHHHHHHcCCEEecCcccccCCHHHHH
Confidence 55566655 4 69999964 446799999999999999 455667788888889999998 7899999
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 003962 698 EILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLT 742 (783)
Q Consensus 698 eaI~~~l~~l~~dp~~~~~ms~~a~~~v~~~ysw~~~a~~ll~ly 742 (783)
++|.+++ +|++.++++++.+.+.. +..+|+.+++.++++.
T Consensus 348 ~ai~~ll----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~ 387 (391)
T 3tsa_A 348 DSIATVL----GDTGFAAAAIKLSDEIT-AMPHPAALVRTLENTA 387 (391)
T ss_dssp HHHHHHH----TCTHHHHHHHHHHHHHH-TSCCHHHHHHHHHHC-
T ss_pred HHHHHHH----cCHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHH
Confidence 9996665 89999999998887765 7899999999888764
No 34
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.74 E-value=8.9e-18 Score=186.07 Aligned_cols=156 Identities=12% Similarity=0.009 Sum_probs=105.7
Q ss_pred CCCcEEEEEecccCCC----------CHHHHHHHHHHhHccCCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCC
Q 003962 546 RNKPILFTMARLDRVK----------NLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLN 615 (783)
Q Consensus 546 ~~k~iIl~vGRL~~~K----------gl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~ 615 (783)
..+++++++|++...| .+..+++++.++ ++++++++++... +.+. .+.
T Consensus 226 ~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~~-----~~~~v~~~~~~~~-----------~~l~------~~~ 283 (398)
T 4fzr_A 226 KQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKL-----GFEVVVAVSDKLA-----------QTLQ------PLP 283 (398)
T ss_dssp SSCEEECC----------------CCSHHHHHHHGGGG-----TCEEEECCCC-------------------------CC
T ss_pred CCCEEEEEccCcccccccccccchHHHHHHHHHHHHhC-----CCEEEEEeCCcch-----------hhhc------cCC
Confidence 3456788899997555 355555555433 5889999887431 1121 346
Q ss_pred CcEEEccCCCCcCChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcCCcEEE----cCccccccccccCceEEEECCC
Q 003962 616 GQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFA----TCKGGPAEIIVNGKSGYHIDPY 691 (783)
Q Consensus 616 ~~V~flG~~~~~~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~GlPVVa----t~~GG~~EiI~dg~~G~li~p~ 691 (783)
++|++.| +++..+ +++ .+|++|.. +.+.+++|||+||+|+|+ ++..+.++.+++...|+.+++.
T Consensus 284 ~~v~~~~----~~~~~~---ll~-~ad~~v~~----gG~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~ 351 (398)
T 4fzr_A 284 EGVLAAG----QFPLSA---IMP-ACDVVVHH----GGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWE 351 (398)
T ss_dssp TTEEEES----CCCHHH---HGG-GCSEEEEC----CCHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHTTSEEECC--
T ss_pred CcEEEeC----cCCHHH---HHh-hCCEEEec----CCHHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCcc
Confidence 8999999 555444 445 59999964 457899999999999999 5555778888888899999877
Q ss_pred --CHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003962 692 --HGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLT 740 (783)
Q Consensus 692 --d~e~lAeaI~~~l~~l~~dp~~~~~ms~~a~~~v~~~ysw~~~a~~ll~ 740 (783)
|+++++++|.+++ .|++.++++++.+++.. +..+|+.+++.+.+
T Consensus 352 ~~~~~~l~~ai~~ll----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~ 397 (398)
T 4fzr_A 352 QAGVESVLAACARIR----DDSSYVGNARRLAAEMA-TLPTPADIVRLIEQ 397 (398)
T ss_dssp -----CHHHHHHHHH----HCTHHHHHHHHHHHHHT-TSCCHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHH----hCHHHHHHHHHHHHHHH-cCCCHHHHHHHHhc
Confidence 7888999996665 89999999999888776 77999999887753
No 35
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.74 E-value=1.7e-17 Score=185.13 Aligned_cols=277 Identities=13% Similarity=0.127 Sum_probs=178.2
Q ss_pred CceEEEEcCCCc-hHHHHHHHHhcCCcEEEEecCCCccCCCCCchhhhhccccccccchhhHhHHhhhcCCEEEcCCHHH
Q 003962 383 KPDLIIGNYSDG-NIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQE 461 (783)
Q Consensus 383 ~pDIIh~h~~~~-~lva~llar~lgvp~v~t~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~~a~~~AD~IIt~S~~~ 461 (783)
+||+||++.... ++.+.+++++.|+|++...+++.. + +.+ ..+... ......-+.+|.++++|+..
T Consensus 111 kPDvVi~~g~~~~~~~~~~aa~~~~IPv~h~~ag~rs--~---~~~-~~~~~~-------~~r~~~~~~a~~~~~~se~~ 177 (396)
T 3dzc_A 111 QPDVVLVHGDTATTFAASLAAYYQQIPVGHVEAGLRT--G---NIY-SPWPEE-------GNRKLTAALTQYHFAPTDTS 177 (396)
T ss_dssp CCSEEEEETTSHHHHHHHHHHHTTTCCEEEETCCCCC--S---CTT-SSTTHH-------HHHHHHHHTCSEEEESSHHH
T ss_pred CCCEEEEECCchhHHHHHHHHHHhCCCEEEEECCccc--c---ccc-cCCcHH-------HHHHHHHHhcCEEECCCHHH
Confidence 799999987665 466678889999997654443311 0 000 000000 01112346789999999877
Q ss_pred HhhccccccccccccccccccceeeeccCCCCCCcEEEecCC-ccCCCCCCCchHHHhhccCchhhHHhhcChhhhhhhh
Q 003962 462 IAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPG-ADMSIYFPYTEEKRRLKSFHPEIEELLYSDVENKEHL 540 (783)
Q Consensus 462 ~~~~~~~v~qy~~~~~f~~p~l~~v~~gi~~~~~k~~VIpnG-vD~~~f~p~~~~~~r~~~~~~~~~~~l~~~~~~~~~~ 540 (783)
.+.+.+ .|++ ++++.+++|. +|...+.+..... . ..+ ....++.+
T Consensus 178 ~~~l~~--------------------~G~~--~~ki~vvGn~~~d~~~~~~~~~~~-~-----~~~------~~~~r~~l 223 (396)
T 3dzc_A 178 RANLLQ--------------------ENYN--AENIFVTGNTVIDALLAVREKIHT-D-----MDL------QATLESQF 223 (396)
T ss_dssp HHHHHH--------------------TTCC--GGGEEECCCHHHHHHHHHHHHHHH-C-----HHH------HHHHHHTC
T ss_pred HHHHHH--------------------cCCC--cCcEEEECCcHHHHHHHhhhhccc-c-----hhh------HHHHHHHh
Confidence 653221 2454 6789999884 4432211110000 0 000 02334556
Q ss_pred ccccCCCCcEE-EEEeccc-CCCCHHHHHHHHHHhHccCCCeEEEEE-eCCCCCCCccHHHHHHHHHHHHHHHHcCCCCc
Q 003962 541 CVLKDRNKPIL-FTMARLD-RVKNLTGLVEWYGKNAKLRELVNLVVV-GGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQ 617 (783)
Q Consensus 541 gll~~~~k~iI-l~vGRL~-~~Kgl~~LieA~~~l~~~~~~~~LvIV-G~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~ 617 (783)
|++ +++++++ ++.+|.. ..|++..+++|+.++.+.+|++++++. |.++ ...+.+++. .+..++
T Consensus 224 g~l-~~~~~~vlv~~hR~~~~~~~~~~ll~A~~~l~~~~~~~~~v~~~g~~~----------~~~~~l~~~---~~~~~~ 289 (396)
T 3dzc_A 224 PML-DASKKLILVTGHRRESFGGGFERICQALITTAEQHPECQILYPVHLNP----------NVREPVNKL---LKGVSN 289 (396)
T ss_dssp TTC-CTTSEEEEEECSCBCCCTTHHHHHHHHHHHHHHHCTTEEEEEECCBCH----------HHHHHHHHH---TTTCTT
T ss_pred Ccc-CCCCCEEEEEECCcccchhHHHHHHHHHHHHHHhCCCceEEEEeCCCh----------HHHHHHHHH---HcCCCC
Confidence 632 3444554 4555654 348899999999999888889999986 4442 112223222 344578
Q ss_pred EEEccCCCCcCChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcCCcEEEc-CccccccccccCceEEEECCCCHHHH
Q 003962 618 FRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFAT-CKGGPAEIIVNGKSGYHIDPYHGEQA 696 (783)
Q Consensus 618 V~flG~~~~~~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~GlPVVat-~~GG~~EiI~dg~~G~li~p~d~e~l 696 (783)
|.+++ .+...++..+|+. ||++|.+| | |++ +|||+||+|||++ +.++..|++++| .++++++ |++++
T Consensus 290 v~~~~----~lg~~~~~~l~~~-ad~vv~~S---G-g~~-~EA~a~G~PvV~~~~~~~~~e~v~~G-~~~lv~~-d~~~l 357 (396)
T 3dzc_A 290 IVLIE----PQQYLPFVYLMDR-AHIILTDS---G-GIQ-EEAPSLGKPVLVMRETTERPEAVAAG-TVKLVGT-NQQQI 357 (396)
T ss_dssp EEEEC----CCCHHHHHHHHHH-CSEEEESC---S-GGG-TTGGGGTCCEEECCSSCSCHHHHHHT-SEEECTT-CHHHH
T ss_pred EEEeC----CCCHHHHHHHHHh-cCEEEECC---c-cHH-HHHHHcCCCEEEccCCCcchHHHHcC-ceEEcCC-CHHHH
Confidence 99998 5666788888885 99999998 3 444 8999999999999 888888999888 5777764 89999
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003962 697 AEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTL 741 (783)
Q Consensus 697 AeaI~~~l~~l~~dp~~~~~ms~~a~~~v~~~ysw~~~a~~ll~l 741 (783)
++++.+++ .|++.+++|++++. .|.....++++.++
T Consensus 358 ~~ai~~ll----~d~~~~~~m~~~~~-----~~~~~~aa~ri~~~ 393 (396)
T 3dzc_A 358 CDALSLLL----TDPQAYQAMSQAHN-----PYGDGKACQRIADI 393 (396)
T ss_dssp HHHHHHHH----HCHHHHHHHHTSCC-----TTCCSCHHHHHHHH
T ss_pred HHHHHHHH----cCHHHHHHHhhccC-----CCcCChHHHHHHHH
Confidence 99996665 89999999987653 35555555555544
No 36
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.72 E-value=9.7e-17 Score=179.39 Aligned_cols=272 Identities=14% Similarity=0.101 Sum_probs=176.8
Q ss_pred CCceEEEEcCCCc-hHHHHHHHHhcCCcEEEEecCCCccCCCCCchhhhhccccccccchhhHhHHhhhcCCEEEcCCHH
Q 003962 382 GKPDLIIGNYSDG-NIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQ 460 (783)
Q Consensus 382 ~~pDIIh~h~~~~-~lva~llar~lgvp~v~t~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~~a~~~AD~IIt~S~~ 460 (783)
.+||+||++.... .+.+.+++++.|+|++....++.. + +.++..... ......-+.+|.+++.|+.
T Consensus 113 ~kPD~Vi~~gd~~~~l~~~laA~~~~IPv~h~~aglrs--~---~~~~~~p~~--------~~r~~~~~~a~~~~~~se~ 179 (403)
T 3ot5_A 113 ENPDIVLVHGDTTTSFAAGLATFYQQKMLGHVEAGLRT--W---NKYSPFPEE--------MNRQLTGVMADIHFSPTKQ 179 (403)
T ss_dssp HCCSEEEEETTCHHHHHHHHHHHHTTCEEEEESCCCCC--S---CTTSSTTHH--------HHHHHHHHHCSEEEESSHH
T ss_pred cCCCEEEEECCchhHHHHHHHHHHhCCCEEEEECCccc--c---ccccCCcHH--------HHHHHHHHhcCEEECCCHH
Confidence 3799999987654 566678889999997644333311 0 100000000 0111233458999999988
Q ss_pred HHhhccccccccccccccccccceeeeccCCCCCCcEEEecC-CccCCCCCCCchHHHhhccCchhhHHhhcChhhhhhh
Q 003962 461 EIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSP-GADMSIYFPYTEEKRRLKSFHPEIEELLYSDVENKEH 539 (783)
Q Consensus 461 ~~~~~~~~v~qy~~~~~f~~p~l~~v~~gi~~~~~k~~VIpn-GvD~~~f~p~~~~~~r~~~~~~~~~~~l~~~~~~~~~ 539 (783)
..+.+.+ .|++ ++++.+++| ++|...+.+..... .+.++.
T Consensus 180 ~~~~l~~--------------------~Gi~--~~~i~vvGn~~~D~~~~~~~~~~~-----------------~~~~~~ 220 (403)
T 3ot5_A 180 AKENLLA--------------------EGKD--PATIFVTGNTAIDALKTTVQKDYH-----------------HPILEN 220 (403)
T ss_dssp HHHHHHH--------------------TTCC--GGGEEECCCHHHHHHHHHSCTTCC-----------------CHHHHS
T ss_pred HHHHHHH--------------------cCCC--cccEEEeCCchHHHHHhhhhhhcc-----------------hHHHHh
Confidence 7653221 2554 678999987 45643322211000 001111
Q ss_pred hccccCCCCcEEEEEecccC-CCCHHHHHHHHHHhHccCCCeEEEEEeC-CCCCCCccHHHHHHHHHHHHHHHH-cCCCC
Q 003962 540 LCVLKDRNKPILFTMARLDR-VKNLTGLVEWYGKNAKLRELVNLVVVGG-DRRKESKDLEEQAEMKKMYSLIDQ-YKLNG 616 (783)
Q Consensus 540 ~gll~~~~k~iIl~vGRL~~-~Kgl~~LieA~~~l~~~~~~~~LvIVG~-g~~~~~~~~ee~~~~~~l~~li~~-~~L~~ 616 (783)
+ ++++.++++.||... .|++..+++|+.++.+.+|+++++++++ ++ .+++.+++ ++..+
T Consensus 221 l----~~~~~vlv~~~r~~~~~~~l~~ll~a~~~l~~~~~~~~~v~~~~~~~--------------~~~~~l~~~~~~~~ 282 (403)
T 3ot5_A 221 L----GDNRLILMTAHRRENLGEPMQGMFEAVREIVESREDTELVYPMHLNP--------------AVREKAMAILGGHE 282 (403)
T ss_dssp C----TTCEEEEECCCCHHHHTTHHHHHHHHHHHHHHHCTTEEEEEECCSCH--------------HHHHHHHHHHTTCT
T ss_pred c----cCCCEEEEEeCcccccCcHHHHHHHHHHHHHHhCCCceEEEecCCCH--------------HHHHHHHHHhCCCC
Confidence 1 233345666777654 4789999999999988889999998743 31 12222222 34457
Q ss_pred cEEEccCCCCcCChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcCCcEEEc-CccccccccccCceEEEECCCCHHH
Q 003962 617 QFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFAT-CKGGPAEIIVNGKSGYHIDPYHGEQ 695 (783)
Q Consensus 617 ~V~flG~~~~~~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~GlPVVat-~~GG~~EiI~dg~~G~li~p~d~e~ 695 (783)
+|.++| .+...++..+|+. +|++|.+| |...+|||+||+|+|++ +.|+..|.+..| +|+++++ |+++
T Consensus 283 ~v~l~~----~l~~~~~~~l~~~-ad~vv~~S-----Gg~~~EA~a~g~PvV~~~~~~~~~e~v~~g-~~~lv~~-d~~~ 350 (403)
T 3ot5_A 283 RIHLIE----PLDAIDFHNFLRK-SYLVFTDS-----GGVQEEAPGMGVPVLVLRDTTERPEGIEAG-TLKLIGT-NKEN 350 (403)
T ss_dssp TEEEEC----CCCHHHHHHHHHH-EEEEEECC-----HHHHHHGGGTTCCEEECCSSCSCHHHHHHT-SEEECCS-CHHH
T ss_pred CEEEeC----CCCHHHHHHHHHh-cCEEEECC-----ccHHHHHHHhCCCEEEecCCCcchhheeCC-cEEEcCC-CHHH
Confidence 899999 6666789999995 99999988 44448999999999999 788888988777 8998876 8999
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003962 696 AAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLT 740 (783)
Q Consensus 696 lAeaI~~~l~~l~~dp~~~~~ms~~a~~~v~~~ysw~~~a~~ll~ 740 (783)
+++++.+++ .|++.+++|++++..+. ...+++++++.+.+
T Consensus 351 l~~ai~~ll----~~~~~~~~m~~~~~~~g-~~~aa~rI~~~l~~ 390 (403)
T 3ot5_A 351 LIKEALDLL----DNKESHDKMAQAANPYG-DGFAANRILAAIKS 390 (403)
T ss_dssp HHHHHHHHH----HCHHHHHHHHHSCCTTC-CSCHHHHHHHHHHH
T ss_pred HHHHHHHHH----cCHHHHHHHHhhcCccc-CCcHHHHHHHHHHH
Confidence 999997665 79999999987654331 33445555555444
No 37
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.71 E-value=3.8e-16 Score=172.12 Aligned_cols=161 Identities=12% Similarity=0.053 Sum_probs=114.3
Q ss_pred CCCcEEEEEecccCCCCHHHHHHHHHHhHccCCCeEEEE-EeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCC
Q 003962 546 RNKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVV-VGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQ 624 (783)
Q Consensus 546 ~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvI-VG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~ 624 (783)
..+.++++.|+....++ ..+.+++..+.+. + +++++ +|++.+. +.+ ..+.++|++.|
T Consensus 230 ~~~~v~v~~G~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~g~~~~~-----------~~~------~~~~~~v~~~~-- 287 (402)
T 3ia7_A 230 DAPVLLVSLGNQFNEHP-EFFRACAQAFADT-P-WHVVMAIGGFLDP-----------AVL------GPLPPNVEAHQ-- 287 (402)
T ss_dssp TCCEEEEECCSCSSCCH-HHHHHHHHHHTTS-S-CEEEEECCTTSCG-----------GGG------CSCCTTEEEES--
T ss_pred CCCEEEEECCCCCcchH-HHHHHHHHHHhcC-C-cEEEEEeCCcCCh-----------hhh------CCCCCcEEEec--
Confidence 34567788899876552 3333333333332 3 56655 4554331 111 12567999999
Q ss_pred CCcCChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcCCcEEEc-----CccccccccccCceEEEECCC--CHHHHH
Q 003962 625 MNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFAT-----CKGGPAEIIVNGKSGYHIDPY--HGEQAA 697 (783)
Q Consensus 625 ~~~~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~GlPVVat-----~~GG~~EiI~dg~~G~li~p~--d~e~lA 697 (783)
+++.. .+++ .+|++|..+- ..|++|||++|+|+|+. +..+.++.+.+...|..++++ ++++++
T Consensus 288 --~~~~~---~ll~-~ad~~v~~~G----~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~ 357 (402)
T 3ia7_A 288 --WIPFH---SVLA-HARACLTHGT----TGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIR 357 (402)
T ss_dssp --CCCHH---HHHT-TEEEEEECCC----HHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEEECCGGGCSHHHHH
T ss_pred --CCCHH---HHHh-hCCEEEECCC----HHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCEEEccCCCCCHHHHH
Confidence 55444 5555 5999998753 37899999999999954 445677888888899999876 899999
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 003962 698 EILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTG 743 (783)
Q Consensus 698 eaI~~~l~~l~~dp~~~~~ms~~a~~~v~~~ysw~~~a~~ll~ly~ 743 (783)
+++.+++ +|++.++++++.+.+.. +..+++..++.+++++.
T Consensus 358 ~~~~~ll----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~ 398 (402)
T 3ia7_A 358 EAVERLA----ADSAVRERVRRMQRDIL-SSGGPARAADEVEAYLG 398 (402)
T ss_dssp HHHHHHH----HCHHHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH----cCHHHHHHHHHHHHHHh-hCChHHHHHHHHHHHHh
Confidence 9996665 89999999988887665 67899999999988764
No 38
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.71 E-value=2.4e-16 Score=174.67 Aligned_cols=157 Identities=15% Similarity=0.089 Sum_probs=117.4
Q ss_pred CCCcEEEEEecccCC-CCHHHHHHHHHHhHccCCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCC
Q 003962 546 RNKPILFTMARLDRV-KNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQ 624 (783)
Q Consensus 546 ~~k~iIl~vGRL~~~-Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~ 624 (783)
..+++++++|++... ++...+.+++..+.+. ++++++++++.+. +.+ -.+.++|++.|
T Consensus 231 ~~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~~--~~~~v~~~g~~~~-----------~~l------~~~~~~v~~~~-- 289 (398)
T 3oti_A 231 ARPEVAITMGTIELQAFGIGAVEPIIAAAGEV--DADFVLALGDLDI-----------SPL------GTLPRNVRAVG-- 289 (398)
T ss_dssp SSCEEEECCTTTHHHHHCGGGHHHHHHHHHTS--SSEEEEECTTSCC-----------GGG------CSCCTTEEEES--
T ss_pred CCCEEEEEcCCCccccCcHHHHHHHHHHHHcC--CCEEEEEECCcCh-----------hhh------ccCCCcEEEEc--
Confidence 345677889999654 4555566666555543 6899999988642 111 13567999999
Q ss_pred CCcCChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcCCcEEE----cCccccc--cccccCceEEEECCC--CHHHH
Q 003962 625 MNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFA----TCKGGPA--EIIVNGKSGYHIDPY--HGEQA 696 (783)
Q Consensus 625 ~~~~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~GlPVVa----t~~GG~~--EiI~dg~~G~li~p~--d~e~l 696 (783)
+++..++ ++ .+|++|.. +-+.+++|||++|+|+|+ .+.++.+ +.+++...|+.+++. +++.+
T Consensus 290 --~~~~~~l---l~-~ad~~v~~----~G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~~~~~~~g~g~~~~~~~~~~~~l 359 (398)
T 3oti_A 290 --WTPLHTL---LR-TCTAVVHH----GGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDKVDADLL 359 (398)
T ss_dssp --SCCHHHH---HT-TCSEEEEC----CCHHHHHHHHHHTCCEEECCCTTCCSSCTTHHHHHHHTSEEECCGGGCCHHHH
T ss_pred --cCCHHHH---Hh-hCCEEEEC----CCHHHHHHHHHhCCCEEEcCCCchhHHHHHHHHHHHCCCEEeeCCCCCCHHHH
Confidence 5555554 44 59999964 446799999999999999 5667888 999988899999876 55555
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 003962 697 AEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLT 742 (783)
Q Consensus 697 AeaI~~~l~~l~~dp~~~~~ms~~a~~~v~~~ysw~~~a~~ll~ly 742 (783)
+ +++ +|+++++++++.+.+.. ...+|+.+++.+++++
T Consensus 360 ~----~ll----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~ 396 (398)
T 3oti_A 360 R----RLI----GDESLRTAAREVREEMV-ALPTPAETVRRIVERI 396 (398)
T ss_dssp H----HHH----HCHHHHHHHHHHHHHHH-TSCCHHHHHHHHHHHH
T ss_pred H----HHH----cCHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHh
Confidence 5 333 79999999988888765 7899999999998875
No 39
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.66 E-value=1.6e-14 Score=160.36 Aligned_cols=161 Identities=11% Similarity=-0.013 Sum_probs=112.9
Q ss_pred CCCcEEEEEecccCCCCHHHHHHHHHHhHccCCCeEEEE-EeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCC
Q 003962 546 RNKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVV-VGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQ 624 (783)
Q Consensus 546 ~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvI-VG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~ 624 (783)
..+.++++.|++...++ ..+.+++..+.+ .+ +++++ +|++.+. +.+ ..+.++|++.|
T Consensus 246 ~~~~v~v~~Gs~~~~~~-~~~~~~~~al~~-~~-~~~v~~~g~~~~~-----------~~l------~~~~~~v~~~~-- 303 (415)
T 3rsc_A 246 DLPVVLVSLGTTFNDRP-GFFRDCARAFDG-QP-WHVVMTLGGQVDP-----------AAL------GDLPPNVEAHR-- 303 (415)
T ss_dssp CCCEEEEECTTTSCCCH-HHHHHHHHHHTT-SS-CEEEEECTTTSCG-----------GGG------CCCCTTEEEES--
T ss_pred CCCEEEEECCCCCCChH-HHHHHHHHHHhc-CC-cEEEEEeCCCCCh-----------HHh------cCCCCcEEEEe--
Confidence 34556788899865432 223333333332 23 77777 4544331 111 13567999998
Q ss_pred CCcCChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcCCcEEEc----CccccccccccCceEEEECCC--CHHHHHH
Q 003962 625 MNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFAT----CKGGPAEIIVNGKSGYHIDPY--HGEQAAE 698 (783)
Q Consensus 625 ~~~~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~GlPVVat----~~GG~~EiI~dg~~G~li~p~--d~e~lAe 698 (783)
+++.. .+++ .+|++|..+- ..|++|||++|+|+|+. +....++.+.+...|..++++ +++++++
T Consensus 304 --~~~~~---~ll~-~ad~~v~~~G----~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l~~~g~g~~~~~~~~~~~~l~~ 373 (415)
T 3rsc_A 304 --WVPHV---KVLE-QATVCVTHGG----MGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVLPGEKADGDTLLA 373 (415)
T ss_dssp --CCCHH---HHHH-HEEEEEESCC----HHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHHTCEEECCGGGCCHHHHHH
T ss_pred --cCCHH---HHHh-hCCEEEECCc----HHHHHHHHHhCCCEEEeCCcchHHHHHHHHHHcCCEEEcccCCCCHHHHHH
Confidence 55555 4455 5999998642 36899999999999994 455567777887899999876 8899999
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 003962 699 ILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTG 743 (783)
Q Consensus 699 aI~~~l~~l~~dp~~~~~ms~~a~~~v~~~ysw~~~a~~ll~ly~ 743 (783)
+|.+++ .|++.++++++.+.+.. ....++..++.+++++.
T Consensus 374 ~i~~ll----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~ 413 (415)
T 3rsc_A 374 AVGAVA----ADPALLARVEAMRGHVR-RAGGAARAADAVEAYLA 413 (415)
T ss_dssp HHHHHH----TCHHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHH
T ss_pred HHHHHH----cCHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhh
Confidence 996665 89999999988777765 77899999999888764
No 40
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.62 E-value=4.3e-14 Score=155.46 Aligned_cols=155 Identities=18% Similarity=0.107 Sum_probs=113.6
Q ss_pred CcEEEEEecccCC-------CCHHHHHHHHHHhHccCCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEE
Q 003962 548 KPILFTMARLDRV-------KNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRW 620 (783)
Q Consensus 548 k~iIl~vGRL~~~-------Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~f 620 (783)
..+++++|++... +.+..+++++.+. ++++++++++.+ .+++. . +.++|.+
T Consensus 211 ~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~~-----~~~~~~~~g~~~-----------~~~l~----~--~~~~v~~ 268 (384)
T 2p6p_A 211 QRVLVTSGSRVAKESYDRNFDFLRGLAKDLVRW-----DVELIVAAPDTV-----------AEALR----A--EVPQARV 268 (384)
T ss_dssp CEEEEECSSSSSCCSSCCCCTTHHHHHHHHHTT-----TCEEEEECCHHH-----------HHHHH----H--HCTTSEE
T ss_pred CEEEEECCCCCccccccccHHHHHHHHHHHhcC-----CcEEEEEeCCCC-----------HHhhC----C--CCCceEE
Confidence 4578899999875 5677777777543 578888776521 12222 1 3578999
Q ss_pred ccCCCCcCChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcCCcEEEcCccc----cccccccCceEEEECCC--CHH
Q 003962 621 ISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGG----PAEIIVNGKSGYHIDPY--HGE 694 (783)
Q Consensus 621 lG~~~~~~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~GlPVVat~~GG----~~EiI~dg~~G~li~p~--d~e 694 (783)
| +++..++ ++ ++|++|..+ -+++++|||+||+|+|+...++ .++.+.+...|+.+++. +++
T Consensus 269 -~----~~~~~~~---l~-~~d~~v~~~----G~~t~~Ea~~~G~P~v~~p~~~dq~~~a~~~~~~g~g~~~~~~~~~~~ 335 (384)
T 2p6p_A 269 -G----WTPLDVV---AP-TCDLLVHHA----GGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIALLPGEDSTE 335 (384)
T ss_dssp -E----CCCHHHH---GG-GCSEEEECS----CTTHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTCCCHH
T ss_pred -c----CCCHHHH---Hh-hCCEEEeCC----cHHHHHHHHHhCCCEEEccCcccchHHHHHHHHCCCeEecCcCCCCHH
Confidence 9 5555554 45 599999863 3569999999999999997644 66777777789999865 789
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 003962 695 QAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLT 742 (783)
Q Consensus 695 ~lAeaI~~~l~~l~~dp~~~~~ms~~a~~~v~~~ysw~~~a~~ll~ly 742 (783)
+++++|.+++ .|+++++++++.+.+.. ..-.-+..++.+..+.
T Consensus 336 ~l~~~i~~ll----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~ 378 (384)
T 2p6p_A 336 AIADSCQELQ----AKDTYARRAQDLSREIS-GMPLPATVVTALEQLA 378 (384)
T ss_dssp HHHHHHHHHH----HCHHHHHHHHHHHHHHH-TSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----cCHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHh
Confidence 9999997666 79999999988887665 4556777777666654
No 41
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=99.50 E-value=1.9e-13 Score=160.82 Aligned_cols=332 Identities=14% Similarity=0.029 Sum_probs=215.4
Q ss_pred CceEEEEcCCCchHHHH-HHHHh--------------cCCcEEEEecCCCccCC---CCCc--------------hhhhh
Q 003962 383 KPDLIIGNYSDGNIVAS-LLAHK--------------LGVTQCTIAHALEKTKY---PDSD--------------IYWKN 430 (783)
Q Consensus 383 ~pDIIh~h~~~~~lva~-llar~--------------lgvp~v~t~H~l~~~~~---~~s~--------------~~~~~ 430 (783)
+||+||+|.+.++++.. ++... .+.+.++|.|++.+... +... +.+..
T Consensus 289 ~p~viHlNDtHpal~i~ElmR~l~d~~~~~~d~A~~i~~~~~vyT~HTl~~egle~wp~~l~~~~lpr~~~ii~~I~~~~ 368 (796)
T 2c4m_A 289 EFHSVQLNDTHPVLAIPELMRLLMDEHDMGWEESWAIVSKTFAYTNHTVLTEALEQWDEQIFQQLFWRVWEIIAEIDRRF 368 (796)
T ss_dssp HHEEEEEESSTTTTHHHHHHHHHHHHSCCCHHHHHHHHHHHEEEECCCSSSTTSCEEEHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCeEEEeCCChHHhHHHHHHHHHhhhcCCCHHHHHHHhhccEEEEecCchHHHhhhCCHHHHHHHhHHHHHHHcCcCHHH
Confidence 69999999998876555 33222 24578999999765442 1110 00100
Q ss_pred cc-------------c-cccccchhhHhHHhhhcCCEEEcCCHHHHhhcccc-ccccccccccccccceeeeccCCCCCC
Q 003962 431 LD-------------D-KYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDT-VGQYESHTAFTLPGLYRVVHGIDVFDP 495 (783)
Q Consensus 431 ~~-------------~-~y~f~~~~~~e~~a~~~AD~IIt~S~~~~~~~~~~-v~qy~~~~~f~~p~l~~v~~gi~~~~~ 495 (783)
+. . ......++..-..++..|+.|.++|....+.++.. .+. ++ ...+.
T Consensus 369 ~~~~~~~~~~~~~~~~~~i~~~~~vnMa~lai~~S~~VNgVS~lHae~ik~~~f~~-----------~~------~~~p~ 431 (796)
T 2c4m_A 369 RLERAADGLDEETINRMAPIQHGTVHMAWIACYAAYSINGVAALHTEIIKAETLAD-----------WY------ALWPE 431 (796)
T ss_dssp HHHHHHTTCCHHHHHHHCSEETTEEEHHHHHHHHCSEEEESSHHHHHHHHHTTTHH-----------HH------HHCGG
T ss_pred HHHHHhcCCcHhhhhcccceeCCcccHHHHHHHhcCceeeccHHHHHHhhhhhhhh-----------HH------HcCcc
Confidence 00 0 00011134445678999999999998877765532 211 11 12367
Q ss_pred cEEEecCCccCCCC----CCCchHH--H---------------hhccCchh-------hHHhhcChhh----hhhhhccc
Q 003962 496 KFNIVSPGADMSIY----FPYTEEK--R---------------RLKSFHPE-------IEELLYSDVE----NKEHLCVL 543 (783)
Q Consensus 496 k~~VIpnGvD~~~f----~p~~~~~--~---------------r~~~~~~~-------~~~~l~~~~~----~~~~~gll 543 (783)
|++-|-||||...+ .|..... . .+..+.+. .+.+.-++.. .+++.|+.
T Consensus 432 kf~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~~w~~d~~~l~~l~~~~~d~~~~~~l~~~K~~nK~~L~~~l~~~~Gl~ 511 (796)
T 2c4m_A 432 KFNNKTNGVTPRRWLRMINPGLSDLLTRLSGSDDWVTDLDELKKLRSYADDKSVLEELRAIKAANKQDFAEWILERQGIE 511 (796)
T ss_dssp GEEECCCCBCTCCCCCTTCHHHHHHHHHHHSSSGGGGCGGGGGGGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred ccccccCCcchHHhhcccCHhHHHHHHHhcCchhhhhChHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 89999999999988 3432111 0 01110111 1223334444 46777887
Q ss_pred cCCCCcEEEEEecccCCCCHHH-HHHHHHHhHc--cC-----CCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHH----H
Q 003962 544 KDRNKPILFTMARLDRVKNLTG-LVEWYGKNAK--LR-----ELVNLVVVGGDRRKESKDLEEQAEMKKMYSLID----Q 611 (783)
Q Consensus 544 ~~~~k~iIl~vGRL~~~Kgl~~-LieA~~~l~~--~~-----~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~----~ 611 (783)
.+++.+.++++.|+..+|+.++ ++..+.++.+ .. ..+++|+.|.+.+. +...+..++.+..+++ .
T Consensus 512 vdpd~l~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~---y~~aK~iIk~i~~va~~in~d 588 (796)
T 2c4m_A 512 IDPESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDIPARTVIFGAKAAPG---YVRAKAIIKLINSIADLVNND 588 (796)
T ss_dssp CCTTSEEEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCCSSCCEEEEEECCCCTT---CHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCcEEEEeecchhhcccCEeHHHHHHHHHHHhhCCCCCCCCeEEEEEecCCHh---HHHHHHHHHHHHHHHHHhccc
Confidence 7888999999999999999999 8888777753 22 35899999988753 3333445555666655 2
Q ss_pred cCCCC--cEEEccCCCCcCChHHHHHHHHccCcEEEeCCC--CCCCcHHHHHHHHcCCcEEEcCcccccccccc--CceE
Q 003962 612 YKLNG--QFRWISSQMNRVRNGELYRYICDTKGAFVQPAL--YEAFGLTVVEAMTCGLPTFATCKGGPAEIIVN--GKSG 685 (783)
Q Consensus 612 ~~L~~--~V~flG~~~~~~~~~el~~~ia~aadvfV~PS~--~E~fGltvlEAMa~GlPVVat~~GG~~EiI~d--g~~G 685 (783)
-...+ +|.|+. -.+..+.+.+..++|++.+||+ +|++|+.-+=||..|+++|+|-.|...|+.++ .+||
T Consensus 589 p~~~~~lKVvFl~-----nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvEi~e~vG~~Ng 663 (796)
T 2c4m_A 589 PEVSPLLKVVFVE-----NYNVSPAEHILPASDVSEQISTAGKEASGTSNMKFMMNGALTLGTMDGANVEIVDSVGEENA 663 (796)
T ss_dssp TTTTTTEEEEEET-----TCCHHHHHHHGGGCSEEEECCCTTSCSCCHHHHHHHHTTCEEEEESSTHHHHHHHHHCGGGS
T ss_pred cccCCceEEEEEC-----CCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeEEeccCCeEeehhhhcCCCcE
Confidence 23456 899885 2355677777778999999999 99999999999999999999999999888755 4699
Q ss_pred EEECC--CCHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 003962 686 YHIDP--YHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVY 745 (783)
Q Consensus 686 ~li~p--~d~e~lAeaI~~~l~~l~~dp~~~~~ms~~a~~~v~~~ysw~~~a~~ll~ly~~~ 745 (783)
|+|.. .++.++-.+ .+..+....|| .++++-.++.. ..|+|..- .++..+|...
T Consensus 664 F~FG~~~~ev~~l~~~-y~a~~~y~~~~-~~~~vvd~~~~---g~fs~~~~-~~y~~Ly~~L 719 (796)
T 2c4m_A 664 YIFGARVEELPALRES-YKPYELYETVP-GLKRALDALDN---GTLNDNNS-GLFYDLKHSL 719 (796)
T ss_dssp EEESCCTTTHHHHHHT-CCHHHHHHHST-THHHHHHTTTS---SSSCCTTC-CHHHHHHHHH
T ss_pred EEecCchhhHHHHHHh-hChHHHhhcCH-HHHHHHHHHHc---CCCCCCCH-HHHHHHHHHH
Confidence 99987 666666554 33333333555 35555554443 46888665 5567776654
No 42
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.49 E-value=3.8e-13 Score=151.27 Aligned_cols=157 Identities=13% Similarity=0.036 Sum_probs=116.7
Q ss_pred CcEEEEEecccC-----CCCHHHHHHHHHHhHccCCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEcc
Q 003962 548 KPILFTMARLDR-----VKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWIS 622 (783)
Q Consensus 548 k~iIl~vGRL~~-----~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG 622 (783)
..++++.|++.. .|.+..+++++.++ ++++++++++.+. +.+ + ++.++|++.|
T Consensus 268 ~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~~-----~~~~v~~~g~~~~-----------~~l----~--~~~~~v~~~~ 325 (441)
T 2yjn_A 268 RRVCLTLGISSRENSIGQVSIEELLGAVGDV-----DAEIIATFDAQQL-----------EGV----A--NIPDNVRTVG 325 (441)
T ss_dssp CEEEEEC----------CCSTTTTHHHHHTS-----SSEEEECCCTTTT-----------SSC----S--SCCSSEEECC
T ss_pred CEEEEECCCCcccccChHHHHHHHHHHHHcC-----CCEEEEEECCcch-----------hhh----c--cCCCCEEEec
Confidence 457888999875 48888899988654 5788888776431 111 0 3567899999
Q ss_pred CCCCcCChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcCCcEEEcCccc----cccccccCceEEEECCC--CHHHH
Q 003962 623 SQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGG----PAEIIVNGKSGYHIDPY--HGEQA 696 (783)
Q Consensus 623 ~~~~~~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~GlPVVat~~GG----~~EiI~dg~~G~li~p~--d~e~l 696 (783)
+++..++ +. ++|++|.. +-+.|+.|||++|+|+|+...++ .++.+.+...|+.+++. +++++
T Consensus 326 ----~~~~~~l---l~-~ad~~V~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l 393 (441)
T 2yjn_A 326 ----FVPMHAL---LP-TCAATVHH----GGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQL 393 (441)
T ss_dssp ----SCCHHHH---GG-GCSEEEEC----CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTTCCHHHH
T ss_pred ----CCCHHHH---Hh-hCCEEEEC----CCHHHHHHHHHhCCCEEEeCCcccHHHHHHHHHHcCCEEEcccccCCHHHH
Confidence 5665555 44 69999984 44679999999999999997743 56677777799999876 88999
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 003962 697 AEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTG 743 (783)
Q Consensus 697 AeaI~~~l~~l~~dp~~~~~ms~~a~~~v~~~ysw~~~a~~ll~ly~ 743 (783)
+++|.+++ +|+++++++++.+.+.. ....++.+++.+++++.
T Consensus 394 ~~~i~~ll----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~ 435 (441)
T 2yjn_A 394 RESVKRVL----DDPAHRAGAARMRDDML-AEPSPAEVVGICEELAA 435 (441)
T ss_dssp HHHHHHHH----HCHHHHHHHHHHHHHHH-TSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHh----cCHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH
Confidence 99997666 79999999988887665 67899999999888754
No 43
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=99.48 E-value=2.9e-12 Score=151.29 Aligned_cols=234 Identities=13% Similarity=0.061 Sum_probs=164.5
Q ss_pred hhhHhHHhhhcCCEEEcCCHHHHhhcccc-ccccccccccccccceeeeccCCCCCCcEEEecCCccCCCC----CCCch
Q 003962 440 QFTADLIAMNHTDFIITSTFQEIAGSKDT-VGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIY----FPYTE 514 (783)
Q Consensus 440 ~~~~e~~a~~~AD~IIt~S~~~~~~~~~~-v~qy~~~~~f~~p~l~~v~~gi~~~~~k~~VIpnGvD~~~f----~p~~~ 514 (783)
++..-..++..|+.|.++|....+.+++. .+. ++ ...+.|+.-|-||||...+ .|...
T Consensus 427 ~vnMa~lai~~S~~VNgVS~lH~e~ik~~~f~~-----------~~------~~~p~k~~~iTNGI~~rrWl~~~NP~l~ 489 (824)
T 2gj4_A 427 RINMAHLCIAGSHAVNGVARIHSEILKKTIFKD-----------FY------ELEPHKFQNKTNGITPRRWLVLCNPGLA 489 (824)
T ss_dssp EEEHHHHHHHTCSCEEESSHHHHHHHHHTTTHH-----------HH------HHCGGGEEECCCCBCTCCCCCCTCHHHH
T ss_pred cccHHHHHHHhcCceeeEcHHHHHHHhhHHhHH-----------HH------HcChhhcccccCCcChhhhcccCCHhHH
Confidence 34455678999999999998877765433 221 11 1126789999999999988 44322
Q ss_pred HHH--h-----------hcc---Cc--hhh-----HHhhcChhh----hhhhhccccCCCCcEEEEEecccCCCCHHHH-
Q 003962 515 EKR--R-----------LKS---FH--PEI-----EELLYSDVE----NKEHLCVLKDRNKPILFTMARLDRVKNLTGL- 566 (783)
Q Consensus 515 ~~~--r-----------~~~---~~--~~~-----~~~l~~~~~----~~~~~gll~~~~k~iIl~vGRL~~~Kgl~~L- 566 (783)
..- . +.. +. +.+ +.+.-++.. ..+..|+..+++.++++++.|+..+|+.+++
T Consensus 490 ~lI~~~ig~~W~~~~~~l~~L~~y~~d~~~~~~~~~~K~~nK~~la~~l~~~~Gl~vdpd~l~~g~vkRl~eYKRq~L~~ 569 (824)
T 2gj4_A 490 EIIAERIGEEYISDLDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQVKRIHEYKRQLLNC 569 (824)
T ss_dssp HHHHHHHCSGGGGCGGGGGGGGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGGGTHHHHH
T ss_pred HHHHHhcCchhhhCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceEeeeecchhhcchhhHH
Confidence 110 0 111 11 122 222334344 5666888778889999999999999999998
Q ss_pred HHHHHHhHc--cCC-----CeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcC----CCC--cEEEccCCCCcCChHHH
Q 003962 567 VEWYGKNAK--LRE-----LVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYK----LNG--QFRWISSQMNRVRNGEL 633 (783)
Q Consensus 567 ieA~~~l~~--~~~-----~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~----L~~--~V~flG~~~~~~~~~el 633 (783)
+..+.++.+ ..| ++++|+.|.+.+. +...+..++.+..+++.++ ..+ +|.|+. -.+..+
T Consensus 570 l~~i~~~~~i~~~~~~~~~p~q~If~GKA~P~---y~~aK~iIkli~~va~~in~Dp~v~~~lKVvFl~-----nYdvsl 641 (824)
T 2gj4_A 570 LHVITLYNRIKKEPNKFVVPRTVMIGGKAAPG---YHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLE-----NYRVSL 641 (824)
T ss_dssp HHHHHHHHHHHHCTTSCCCCEEEEEECCCCTT---CHHHHHHHHHHHHHHHHHTTCTTTGGGEEEEEET-----TCCHHH
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEEEEeCCHh---HHHHHHHHHHHHHHHHHhccCcccCCceEEEEEC-----CCCHHH
Confidence 777776642 222 5789999988653 3444455666777777553 245 788885 235567
Q ss_pred HHHHHccCcEEEeCCC--CCCCcHHHHHHHHcCCcEEEcCccccccccc--cCceEEEECCCCHHHHHHHH
Q 003962 634 YRYICDTKGAFVQPAL--YEAFGLTVVEAMTCGLPTFATCKGGPAEIIV--NGKSGYHIDPYHGEQAAEIL 700 (783)
Q Consensus 634 ~~~ia~aadvfV~PS~--~E~fGltvlEAMa~GlPVVat~~GG~~EiI~--dg~~G~li~p~d~e~lAeaI 700 (783)
.+.+..++|++.+||+ +|++|+.-+=||..|.++|+|-.|...|+.+ .++|||+|... ++++ .++
T Consensus 642 A~~I~~gaDv~l~~S~ag~EAsGTs~MKamlNGaLtigtlDGanvEi~e~vG~~Ngf~FG~~-~~ev-~~l 710 (824)
T 2gj4_A 642 AEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMR-VEDV-DRL 710 (824)
T ss_dssp HHHHGGGCSEEEECCCTTSCSCCSHHHHHHHTTCEEEECSCTTHHHHHHHHCGGGSEECSCC-HHHH-HHH
T ss_pred HHHHhhhcceeecCCCCCCCCCchHHHHHHHcCceEEEEecCccchhhhccCCCCEEEeCCc-HHHH-HHH
Confidence 7777778999999999 9999999999999999999999888888865 45699999875 7766 444
No 44
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=99.47 E-value=5e-13 Score=157.18 Aligned_cols=333 Identities=13% Similarity=-0.005 Sum_probs=216.7
Q ss_pred CceEEEEcCCCchHHHH-HHHHh--------------cCCcEEEEecCCCccCC---CCCch--------------hhh-
Q 003962 383 KPDLIIGNYSDGNIVAS-LLAHK--------------LGVTQCTIAHALEKTKY---PDSDI--------------YWK- 429 (783)
Q Consensus 383 ~pDIIh~h~~~~~lva~-llar~--------------lgvp~v~t~H~l~~~~~---~~s~~--------------~~~- 429 (783)
+||+||+|.+.++++.. ++... .+.+.++|.|++.+... +...+ .+.
T Consensus 299 ~p~viHlNDtHpal~i~ElmR~l~d~~~~~~d~A~~i~~~~~vyT~HTl~~egle~wp~~l~~~~lpr~~~ii~~I~~~f 378 (796)
T 1l5w_A 299 DYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEALERWDVKLVKGLLPRHMQIINEINTRF 378 (796)
T ss_dssp HHEEEEEESSTTTTHHHHHHHHHHHHSCCCHHHHHHHHTTTEEEECCCCSGGGSCEEEHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CccEEEecCCccHhHHHHHHHHHhhhcCCCHHHHHHHhhccEEEEecCCcHhhhhcCCHHHHHHHhHHHHHHHhccCHHH
Confidence 69999999998876555 33221 36789999999866442 11100 000
Q ss_pred --h-----------ccc-cccccchhhHhHHhhhcCCEEEcCCHHHHhhccccccccccccccccccceeeeccCCCCCC
Q 003962 430 --N-----------LDD-KYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDP 495 (783)
Q Consensus 430 --~-----------~~~-~y~f~~~~~~e~~a~~~AD~IIt~S~~~~~~~~~~v~qy~~~~~f~~p~l~~v~~gi~~~~~ 495 (783)
. +.. ......++..-..++..|+.|.++|....+.++..... +++ ..++.
T Consensus 379 ~~~~~~~~~~~~~~~~~~~i~~~~~vnMa~lai~~S~~VNgVS~lH~e~ik~~~f~----------~~~------~~~p~ 442 (796)
T 1l5w_A 379 KTLVEKTWPGDEKVWAKLAVVHDKQVHMANLCVVGGFAVNGVAALHSDLVVKDLFP----------EYH------QLWPN 442 (796)
T ss_dssp HHHHHHHSTTCHHHHHHHCSEETTEEEHHHHHHHHSSEEEESSHHHHHHHHHTTSH----------HHH------HHCGG
T ss_pred HHHHHHhcCCcHHHHhhhhcccCCcccHHHHHHHhcCccccccHHHHHHHHhHHhh----------HHH------HhCcc
Confidence 0 000 00001133445678899999999998877765533110 111 12367
Q ss_pred cEEEecCCccCCCC----CCCchHH-------------HhhccC---ch------h-hHHhhcChhh----hhhhhcccc
Q 003962 496 KFNIVSPGADMSIY----FPYTEEK-------------RRLKSF---HP------E-IEELLYSDVE----NKEHLCVLK 544 (783)
Q Consensus 496 k~~VIpnGvD~~~f----~p~~~~~-------------~r~~~~---~~------~-~~~~l~~~~~----~~~~~gll~ 544 (783)
|++-|-||||...+ .|..... ..+..+ .+ + .+.+.-++.. .+++.|+..
T Consensus 443 k~~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~w~~d~~~l~~l~~~~~d~~~~~~l~~~K~~nK~~L~~~l~~~~Gl~v 522 (796)
T 1l5w_A 443 KFHNVTNGITPRRWIKQCNPALAALLDKSLQKEWANDLDQLINLEKFADDAKFRQQYREIKQANKVRLAEFVKVRTGIEI 522 (796)
T ss_dssp GEEECCCCBCHHHHTTTTCHHHHHHHHHHCSSCCTTCGGGGGGGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred ccCCCcCCCcHHHhhcccCHhHHHHHHHhcCcccccCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 89999999998777 3432111 001111 11 1 1223334444 366779877
Q ss_pred CCCCcEEEEEecccCCCCHHH-HHHHHHHhHcc--C-----CCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHH----Hc
Q 003962 545 DRNKPILFTMARLDRVKNLTG-LVEWYGKNAKL--R-----ELVNLVVVGGDRRKESKDLEEQAEMKKMYSLID----QY 612 (783)
Q Consensus 545 ~~~k~iIl~vGRL~~~Kgl~~-LieA~~~l~~~--~-----~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~----~~ 612 (783)
+++.+.++++.|+..+|+.++ ++..+.++.+. . ..+++|+.|.+.+. +...+..++.+..+++ .-
T Consensus 523 dpd~l~~~~vkRl~eYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~---y~~aK~iIk~i~~va~~in~Dp 599 (796)
T 1l5w_A 523 NPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPG---YYLAKNIIFAINKVADVINNDP 599 (796)
T ss_dssp CTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTTCCCCCEEEEEECCCCTT---CHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCCcceEeeeecchhhcccCEeHHHHHHHHHHHhcCCCCCCCCeEEEEEecCChh---HHHHHHHHHHHHHHHHHhcccc
Confidence 888999999999999999999 78877776541 1 35889999988753 3333444555566655 22
Q ss_pred CCCC--cEEEccCCCCcCChHHHHHHHHccCcEEEeCCC--CCCCcHHHHHHHHcCCcEEEcCcccccccccc--CceEE
Q 003962 613 KLNG--QFRWISSQMNRVRNGELYRYICDTKGAFVQPAL--YEAFGLTVVEAMTCGLPTFATCKGGPAEIIVN--GKSGY 686 (783)
Q Consensus 613 ~L~~--~V~flG~~~~~~~~~el~~~ia~aadvfV~PS~--~E~fGltvlEAMa~GlPVVat~~GG~~EiI~d--g~~G~ 686 (783)
...+ +|.|+. -.+..+.+.+..++|++.+||+ +|++|+.-+=||..|.++|+|-.|...|+.++ .+|||
T Consensus 600 ~~~~~lKVvfl~-----nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvEi~e~vG~~NgF 674 (796)
T 1l5w_A 600 LVGDKLKVVFLP-----DYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIF 674 (796)
T ss_dssp TTGGGEEEEECS-----SCCHHHHHHHGGGCSEEEECCCTTTCCCCSHHHHHHHTTCEEEECSCTTHHHHHHHHCGGGSE
T ss_pred ccCCceEEEEEC-----CCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeeecCcCCeeeehhhccCCCcEE
Confidence 3456 799885 2355677777778999999999 99999999999999999999999999888765 46999
Q ss_pred EECCCCHHHHHHHH---HHHHHHhhCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 003962 687 HIDPYHGEQAAEIL---VDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVY 745 (783)
Q Consensus 687 li~p~d~e~lAeaI---~~~l~~l~~dp~~~~~ms~~a~~~v~~~ysw~~~a~~ll~ly~~~ 745 (783)
+|.. +++++.+.- .+..+....|| .++++-.++.. ..|+|..- .++..||...
T Consensus 675 ~FG~-~~~ev~~l~~~~y~a~~~y~~~~-~~~~vvd~~~~---g~fs~~~~-~~y~~Ly~~L 730 (796)
T 1l5w_A 675 IFGH-TVEQVKAILAKGYDPVKWRKKDK-VLDAVLKELES---GKYSDGDK-HAFDQMLHSI 730 (796)
T ss_dssp ECSC-CHHHHHHHHHHCCCHHHHHHHCH-HHHHHHHHHHH---TTTTTTCT-TTTHHHHHHT
T ss_pred EecC-CHHHHHHHHHcccCHHHHhhcCH-HHHHHHHHHHc---CCCCCCcH-HHHHHHHHHH
Confidence 9987 777766322 11222233566 46666665554 57999774 7788888765
No 45
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.47 E-value=1.8e-13 Score=151.97 Aligned_cols=272 Identities=12% Similarity=0.041 Sum_probs=168.3
Q ss_pred CCceEEEEcCCCchHHHHHHHHhcCCcEEEEecCCCccCCCCCchhhhhccccccccchhhHhHHhhhcCCEEEcCCHHH
Q 003962 382 GKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQE 461 (783)
Q Consensus 382 ~~pDIIh~h~~~~~lva~llar~lgvp~v~t~H~l~~~~~~~s~~~~~~~~~~y~f~~~~~~e~~a~~~AD~IIt~S~~~ 461 (783)
.+||+|+++.......+.++|++.|+|++....++.. .+..+.. . ......-+.+|.++++|+..
T Consensus 93 ~kPD~Vlv~gd~~~~~aalaA~~~~IPv~h~eaglrs-----~~~~~pe--e--------~nR~~~~~~a~~~~~~te~~ 157 (385)
T 4hwg_A 93 EKPDAVLFYGDTNSCLSAIAAKRRKIPIFHMEAGNRC-----FDQRVPE--E--------INRKIIDHISDVNITLTEHA 157 (385)
T ss_dssp HCCSEEEEESCSGGGGGHHHHHHTTCCEEEESCCCCC-----SCTTSTH--H--------HHHHHHHHHCSEEEESSHHH
T ss_pred cCCcEEEEECCchHHHHHHHHHHhCCCEEEEeCCCcc-----ccccCcH--H--------HHHHHHHhhhceeecCCHHH
Confidence 3799999987654333378888999997654443311 0000100 0 01112335689999999877
Q ss_pred HhhccccccccccccccccccceeeeccCCCCCCcEEEecCC-ccCCCCCCCchHHHhhccCchhhHHhhcChhhhhhhh
Q 003962 462 IAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPG-ADMSIYFPYTEEKRRLKSFHPEIEELLYSDVENKEHL 540 (783)
Q Consensus 462 ~~~~~~~v~qy~~~~~f~~p~l~~v~~gi~~~~~k~~VIpnG-vD~~~f~p~~~~~~r~~~~~~~~~~~l~~~~~~~~~~ 540 (783)
.+.+.+ .|++ ++++.++.|. +|...+.. ... +..+.++.+
T Consensus 158 ~~~l~~--------------------~G~~--~~~I~vtGnp~~D~~~~~~--~~~---------------~~~~~~~~l 198 (385)
T 4hwg_A 158 RRYLIA--------------------EGLP--AELTFKSGSHMPEVLDRFM--PKI---------------LKSDILDKL 198 (385)
T ss_dssp HHHHHH--------------------TTCC--GGGEEECCCSHHHHHHHHH--HHH---------------HHCCHHHHT
T ss_pred HHHHHH--------------------cCCC--cCcEEEECCchHHHHHHhh--hhc---------------chhHHHHHc
Confidence 653221 2554 6789898873 44321100 000 112345667
Q ss_pred ccccCCCCcEEEEEeccc---CCCCHHHHHHHHHHhHccCCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHc-C---
Q 003962 541 CVLKDRNKPILFTMARLD---RVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQY-K--- 613 (783)
Q Consensus 541 gll~~~~k~iIl~vGRL~---~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~-~--- 613 (783)
|+ ++++.++++.+|.. ..|++..+++|+.++.+.+ ++.+++..+. ..++.++++ +
T Consensus 199 gl--~~~~~iLvt~hr~e~~~~~~~l~~ll~al~~l~~~~-~~~vv~p~~p---------------~~~~~l~~~~~~~~ 260 (385)
T 4hwg_A 199 SL--TPKQYFLISSHREENVDVKNNLKELLNSLQMLIKEY-NFLIIFSTHP---------------RTKKRLEDLEGFKE 260 (385)
T ss_dssp TC--CTTSEEEEEECCC-----CHHHHHHHHHHHHHHHHH-CCEEEEEECH---------------HHHHHHHTSGGGGG
T ss_pred CC--CcCCEEEEEeCCchhcCcHHHHHHHHHHHHHHHhcC-CeEEEEECCh---------------HHHHHHHHHHHHhc
Confidence 87 44445566666643 4478999999999987654 6777775532 234444444 3
Q ss_pred CCCcEEEccCCCCcCChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcCCcEEEcCcc-ccccccccCceEEEECCCC
Q 003962 614 LNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKG-GPAEIIVNGKSGYHIDPYH 692 (783)
Q Consensus 614 L~~~V~flG~~~~~~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~GlPVVat~~G-G~~EiI~dg~~G~li~p~d 692 (783)
..++|.+++ .+...++..+++. +|++|.+| |....||+++|+|+|+.+.. +..|.++.| ++.++.+ |
T Consensus 261 ~~~~v~l~~----~lg~~~~~~l~~~-adlvvt~S-----Ggv~~EA~alG~Pvv~~~~~ter~e~v~~G-~~~lv~~-d 328 (385)
T 4hwg_A 261 LGDKIRFLP----AFSFTDYVKLQMN-AFCILSDS-----GTITEEASILNLPALNIREAHERPEGMDAG-TLIMSGF-K 328 (385)
T ss_dssp TGGGEEECC----CCCHHHHHHHHHH-CSEEEECC-----TTHHHHHHHTTCCEEECSSSCSCTHHHHHT-CCEECCS-S
T ss_pred CCCCEEEEc----CCCHHHHHHHHHh-CcEEEECC-----ccHHHHHHHcCCCEEEcCCCccchhhhhcC-ceEEcCC-C
Confidence 246899987 5666788888885 99999877 55679999999999998553 357777777 6777754 8
Q ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003962 693 GEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTL 741 (783)
Q Consensus 693 ~e~lAeaI~~~l~~l~~dp~~~~~ms~~a~~~v~~~ysw~~~a~~ll~l 741 (783)
++++++++.+++ +|+..+++|++++..+.....+-+++++.+.+.
T Consensus 329 ~~~i~~ai~~ll----~d~~~~~~m~~~~~~~~g~g~aa~rI~~~l~~~ 373 (385)
T 4hwg_A 329 AERVLQAVKTIT----EEHDNNKRTQGLVPDYNEAGLVSKKILRIVLSY 373 (385)
T ss_dssp HHHHHHHHHHHH----TTCBTTBCCSCCCHHHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----hChHHHHHhhccCCCCCCCChHHHHHHHHHHHH
Confidence 999999996665 788777666554433201223344444444443
No 46
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.44 E-value=1.9e-11 Score=136.33 Aligned_cols=161 Identities=16% Similarity=0.069 Sum_probs=109.8
Q ss_pred CCCcEEEEEecccCCCCHHHHHHHHHHhHccCCCeEEE-EEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCC
Q 003962 546 RNKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLV-VVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQ 624 (783)
Q Consensus 546 ~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~Lv-IVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~ 624 (783)
..+.++++.|++. .+....+.+++..+.+ .+++++ ++|.+.+. +.+ . .+.++|++.|
T Consensus 254 ~~~~v~v~~Gs~~-~~~~~~~~~~~~al~~--~~~~~~~~~g~~~~~-----------~~~----~--~~~~~v~~~~-- 311 (424)
T 2iya_A 254 GRPVLLIALGSAF-TDHLDFYRTCLSAVDG--LDWHVVLSVGRFVDP-----------ADL----G--EVPPNVEVHQ-- 311 (424)
T ss_dssp SCCEEEEECCSSS-CCCHHHHHHHHHHHTT--CSSEEEEECCTTSCG-----------GGG----C--SCCTTEEEES--
T ss_pred CCCEEEEEcCCCC-cchHHHHHHHHHHHhc--CCcEEEEEECCcCCh-----------HHh----c--cCCCCeEEec--
Confidence 3456778889987 3444444444444443 456774 45765431 111 1 2467899999
Q ss_pred CCcCChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcCCcEEEcCcc----ccccccccCceEEEECCC--CHHHHHH
Q 003962 625 MNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKG----GPAEIIVNGKSGYHIDPY--HGEQAAE 698 (783)
Q Consensus 625 ~~~~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~GlPVVat~~G----G~~EiI~dg~~G~li~p~--d~e~lAe 698 (783)
+++.. .+++ .+|++|..+ -..+++|||++|+|+|+.... ..++.+.+...|+.+++. +++++++
T Consensus 312 --~~~~~---~~l~-~~d~~v~~~----G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~ 381 (424)
T 2iya_A 312 --WVPQL---DILT-KASAFITHA----GMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLRE 381 (424)
T ss_dssp --SCCHH---HHHT-TCSEEEECC----CHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCGGGCCHHHHHH
T ss_pred --CCCHH---HHHh-hCCEEEECC----chhHHHHHHHcCCCEEEecCccchHHHHHHHHHCCCEEEcCcCCCCHHHHHH
Confidence 55544 4566 599999753 247999999999999999664 345556666789988765 8899999
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 003962 699 ILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTG 743 (783)
Q Consensus 699 aI~~~l~~l~~dp~~~~~ms~~a~~~v~~~ysw~~~a~~ll~ly~ 743 (783)
+|.+++ .|+++++++.+.+.+.. .....+..++.++++..
T Consensus 382 ~i~~ll----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~ 421 (424)
T 2iya_A 382 AVLAVA----SDPGVAERLAAVRQEIR-EAGGARAAADILEGILA 421 (424)
T ss_dssp HHHHHH----HCHHHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHH----cCHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHh
Confidence 997666 79998888887776543 45667777777777654
No 47
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=99.42 E-value=5.7e-12 Score=140.28 Aligned_cols=156 Identities=12% Similarity=0.039 Sum_probs=109.6
Q ss_pred CCCcEEEEEeccc-CCCCHHHHHHHHHHhHccCCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCC
Q 003962 546 RNKPILFTMARLD-RVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQ 624 (783)
Q Consensus 546 ~~k~iIl~vGRL~-~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~ 624 (783)
..++++++.|++. ..+.+..+++++.++ +++++++++..+. +..++.++|++.+
T Consensus 220 ~~~~Vlv~~Gs~~~~~~~~~~~~~al~~~-----~~~vv~~~g~~~~------------------~~~~~~~~v~~~~-- 274 (404)
T 3h4t_A 220 GSPPVYVGFGSGPAPAEAARVAIEAVRAQ-----GRRVVLSSGWAGL------------------GRIDEGDDCLVVG-- 274 (404)
T ss_dssp SSCCEEECCTTSCCCTTHHHHHHHHHHHT-----TCCEEEECTTTTC------------------CCSSCCTTEEEES--
T ss_pred CCCeEEEECCCCCCcHHHHHHHHHHHHhC-----CCEEEEEeCCccc------------------ccccCCCCEEEec--
Confidence 3456788899998 667778888887764 4667777665331 0123467999998
Q ss_pred CCcCChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcCCcEEEcCcccc----ccccccCceEEEECCC--CHHHHHH
Q 003962 625 MNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGP----AEIIVNGKSGYHIDPY--HGEQAAE 698 (783)
Q Consensus 625 ~~~~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~GlPVVat~~GG~----~EiI~dg~~G~li~p~--d~e~lAe 698 (783)
+++..+++. .+|++|..+- ..|+.||+++|+|+|+...++- .+.+++...|..+++. +++++++
T Consensus 275 --~~~~~~ll~----~~d~~v~~gG----~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ 344 (404)
T 3h4t_A 275 --EVNHQVLFG----RVAAVVHHGG----AGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTPTVESLSA 344 (404)
T ss_dssp --SCCHHHHGG----GSSEEEECCC----HHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHH
T ss_pred --CCCHHHHHh----hCcEEEECCc----HHHHHHHHHcCCCEEEcCCcccHHHHHHHHHHCCCEeccCcCCCCHHHHHH
Confidence 666666554 6999997642 3689999999999999865543 3445566688888754 6889999
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 003962 699 ILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTG 743 (783)
Q Consensus 699 aI~~~l~~l~~dp~~~~~ms~~a~~~v~~~ysw~~~a~~ll~ly~ 743 (783)
+|.+++ + +++++++.+.+.+.. . -.++..++.++++++
T Consensus 345 ai~~ll----~-~~~~~~~~~~~~~~~-~-~~~~~~~~~i~~~~~ 382 (404)
T 3h4t_A 345 ALATAL----T-PGIRARAAAVAGTIR-T-DGTTVAAKLLLEAIS 382 (404)
T ss_dssp HHHHHT----S-HHHHHHHHHHHTTCC-C-CHHHHHHHHHHHHHH
T ss_pred HHHHHh----C-HHHHHHHHHHHHHHh-h-hHHHHHHHHHHHHHh
Confidence 996554 7 888887777665543 3 567777777776653
No 48
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.32 E-value=5.1e-11 Score=132.80 Aligned_cols=153 Identities=11% Similarity=-0.003 Sum_probs=104.1
Q ss_pred CCcEEEEEecc-cCCCCHHHHHHHHHHhHccCCCeEEEEE-eCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCC
Q 003962 547 NKPILFTMARL-DRVKNLTGLVEWYGKNAKLRELVNLVVV-GGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQ 624 (783)
Q Consensus 547 ~k~iIl~vGRL-~~~Kgl~~LieA~~~l~~~~~~~~LvIV-G~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~ 624 (783)
+..++++.|++ ...|.+..++++++++. .+++++ |.+... ...+.++|++.|
T Consensus 238 ~~~v~v~~Gs~~~~~~~~~~~~~al~~~~-----~~~v~~~g~~~~~-------------------~~~~~~~v~~~~-- 291 (415)
T 1iir_A 238 PPPVYLGFGSLGAPADAVRVAIDAIRAHG-----RRVILSRGWADLV-------------------LPDDGADCFAIG-- 291 (415)
T ss_dssp SCCEEEECC---CCHHHHHHHHHHHHHTT-----CCEEECTTCTTCC-------------------CSSCGGGEEECS--
T ss_pred CCeEEEeCCCCCCcHHHHHHHHHHHHHCC-----CeEEEEeCCCccc-------------------ccCCCCCEEEeC--
Confidence 35678899999 57888888888887652 455555 654321 013456899999
Q ss_pred CCcCChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcCCcEEEcCccc----cccccccCceEEEECCC--CHHHHHH
Q 003962 625 MNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGG----PAEIIVNGKSGYHIDPY--HGEQAAE 698 (783)
Q Consensus 625 ~~~~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~GlPVVat~~GG----~~EiI~dg~~G~li~p~--d~e~lAe 698 (783)
+++..+++ . ++|++|..+ -..++.|||++|+|+|+....+ .++.+++...|+.+++. +.+++++
T Consensus 292 --~~~~~~~l---~-~~d~~v~~~----G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~ 361 (415)
T 1iir_A 292 --EVNHQVLF---G-RVAAVIHHG----GAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSA 361 (415)
T ss_dssp --SCCHHHHG---G-GSSEEEECC----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHH
T ss_pred --cCChHHHH---h-hCCEEEeCC----ChhHHHHHHHcCCCEEECCCCCccHHHHHHHHHCCCcccCCcCCCCHHHHHH
Confidence 66666654 4 699999853 2369999999999999986644 55667777789988754 7888888
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003962 699 ILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTL 741 (783)
Q Consensus 699 aI~~~l~~l~~dp~~~~~ms~~a~~~v~~~ysw~~~a~~ll~l 741 (783)
+| +++ .|++.++++.+.+.+.. ..-..+.+++.++++
T Consensus 362 ~i----~~l-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~ 398 (415)
T 1iir_A 362 AL----ATA-LTPETHARATAVAGTIR-TDGAAVAARLLLDAV 398 (415)
T ss_dssp HH----HHH-TSHHHHHHHHHHHHHSC-SCHHHHHHHHHHHHH
T ss_pred HH----HHH-cCHHHHHHHHHHHHHHh-hcChHHHHHHHHHHH
Confidence 88 566 78888887766655432 233344455544444
No 49
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=99.30 E-value=1.5e-11 Score=135.32 Aligned_cols=158 Identities=16% Similarity=0.180 Sum_probs=103.6
Q ss_pred CCCcEEEEEecccCCC-CHHHHHHHHHHhHccCCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCC
Q 003962 546 RNKPILFTMARLDRVK-NLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQ 624 (783)
Q Consensus 546 ~~k~iIl~vGRL~~~K-gl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~ 624 (783)
....++++.|++...+ +...+.+++..+.+ .+..+++.+++.+.. ....++++|.+.+
T Consensus 236 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~--~~~~~v~~~~~~~~~-----------------~~~~~~~~v~~~~-- 294 (400)
T 4amg_A 236 GRRRIAVTLGSIDALSGGIAKLAPLFSEVAD--VDAEFVLTLGGGDLA-----------------LLGELPANVRVVE-- 294 (400)
T ss_dssp TCCEEEECCCSCC--CCSSSTTHHHHHHGGG--SSSEEEEECCTTCCC-----------------CCCCCCTTEEEEC--
T ss_pred CCcEEEEeCCcccccCccHHHHHHHHHHhhc--cCceEEEEecCcccc-----------------ccccCCCCEEEEe--
Confidence 3445677888887544 44555555555554 346666666554310 1124678999998
Q ss_pred CCcCChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcCCcEEEcCccc----cccccccCceEEEECCCCHHHHHHHH
Q 003962 625 MNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGG----PAEIIVNGKSGYHIDPYHGEQAAEIL 700 (783)
Q Consensus 625 ~~~~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~GlPVVat~~GG----~~EiI~dg~~G~li~p~d~e~lAeaI 700 (783)
+++..+++. .+|+||.- +-..++.|||++|+|+|+....+ .++.+++...|..+++. +..+++|
T Consensus 295 --~~p~~~lL~----~~~~~v~h----~G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v~~~G~g~~l~~~--~~~~~al 362 (400)
T 4amg_A 295 --WIPLGALLE----TCDAIIHH----GGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGFDAEAG--SLGAEQC 362 (400)
T ss_dssp --CCCHHHHHT----TCSEEEEC----CCHHHHHHHHHHTCCEEECCC---CHHHHHHHHHHTSEEECCTT--TCSHHHH
T ss_pred --ecCHHHHhh----hhhheecc----CCccHHHHHHHhCCCEEEecCcccHHHHHHHHHHCCCEEEcCCC--CchHHHH
Confidence 677666654 59999863 44579999999999999964443 55666666688888754 4467788
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003962 701 VDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTL 741 (783)
Q Consensus 701 ~~~l~~l~~dp~~~~~ms~~a~~~v~~~ysw~~~a~~ll~l 741 (783)
.+++ +||+++++..+-+.+ +...-+-...++.++++
T Consensus 363 ~~lL----~d~~~r~~a~~l~~~-~~~~~~~~~~a~~le~l 398 (400)
T 4amg_A 363 RRLL----DDAGLREAALRVRQE-MSEMPPPAETAAXLVAL 398 (400)
T ss_dssp HHHH----HCHHHHHHHHHHHHH-HHTSCCHHHHHHHHHHH
T ss_pred HHHH----cCHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHh
Confidence 6655 899988876655544 44556778888877765
No 50
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.25 E-value=1.2e-10 Score=129.62 Aligned_cols=137 Identities=13% Similarity=0.014 Sum_probs=96.4
Q ss_pred CCcEEEEEeccc---CCCCHHHHHHHHHHhHccCCCeEEEEE-eCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEcc
Q 003962 547 NKPILFTMARLD---RVKNLTGLVEWYGKNAKLRELVNLVVV-GGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWIS 622 (783)
Q Consensus 547 ~k~iIl~vGRL~---~~Kgl~~LieA~~~l~~~~~~~~LvIV-G~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG 622 (783)
+..++++.|++. ..|.+..+++++..+ +++++++ |.+... . ..+.+++.+.+
T Consensus 237 ~~~v~v~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~v~~~g~~~~~-------------~------~~~~~~v~~~~ 292 (416)
T 1rrv_A 237 SPPVHIGFGSSSGRGIADAAKVAVEAIRAQ-----GRRVILSRGWTELV-------------L------PDDRDDCFAID 292 (416)
T ss_dssp SCCEEECCTTCCSHHHHHHHHHHHHHHHHT-----TCCEEEECTTTTCC-------------C------SCCCTTEEEES
T ss_pred CCeEEEecCCCCccChHHHHHHHHHHHHHC-----CCeEEEEeCCcccc-------------c------cCCCCCEEEec
Confidence 356778889985 466777778887664 3556665 554210 0 13567899998
Q ss_pred CCCCcCChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcCCcEEEcCccc----cccccccCceEEEECC--CCHHHH
Q 003962 623 SQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGG----PAEIIVNGKSGYHIDP--YHGEQA 696 (783)
Q Consensus 623 ~~~~~~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~GlPVVat~~GG----~~EiI~dg~~G~li~p--~d~e~l 696 (783)
+++..+++ . ++|++|.- +-..|+.|||++|+|+|+....+ .++.+++...|..++. .+.+++
T Consensus 293 ----~~~~~~ll---~-~~d~~v~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l 360 (416)
T 1rrv_A 293 ----EVNFQALF---R-RVAAVIHH----GSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESL 360 (416)
T ss_dssp ----SCCHHHHG---G-GSSEEEEC----CCHHHHHHHHHHTCCEEECCCSBTHHHHHHHHHHHTSEEECSSSCCCHHHH
T ss_pred ----cCChHHHh---c-cCCEEEec----CChhHHHHHHHcCCCEEEccCCCCcHHHHHHHHHCCCccCCCCCCCCHHHH
Confidence 66666654 4 69999983 33569999999999999975533 4556666778998865 478888
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 003962 697 AEILVDFFEKCKADPSYWDKISLGGLKR 724 (783)
Q Consensus 697 AeaI~~~l~~l~~dp~~~~~ms~~a~~~ 724 (783)
+++| +++ .|+++++++.+.+.+.
T Consensus 361 ~~~i----~~l-~~~~~~~~~~~~~~~~ 383 (416)
T 1rrv_A 361 SAAL----TTV-LAPETRARAEAVAGMV 383 (416)
T ss_dssp HHHH----HHH-TSHHHHHHHHHHTTTC
T ss_pred HHHH----HHh-hCHHHHHHHHHHHHHH
Confidence 8888 666 7898888877655443
No 51
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=99.23 E-value=1.3e-10 Score=134.37 Aligned_cols=186 Identities=8% Similarity=-0.041 Sum_probs=129.2
Q ss_pred hccccCCCCcEEEEEecccCCCCHHHHHHHHHHhHccCCCeEEE--EEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCc
Q 003962 540 LCVLKDRNKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLV--VVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQ 617 (783)
Q Consensus 540 ~gll~~~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~Lv--IVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~ 617 (783)
+|++.+++..++++.+++ .|..+.+++++.++.+..|+..|+ ++|++... ...+.+.+.+.|+.++
T Consensus 433 ~~lp~~~G~v~Fg~fn~~--~Ki~p~~l~~WarIL~~vP~s~L~l~~~g~~~g~----------~~~~~~~~~~~GI~~R 500 (631)
T 3q3e_A 433 YLLRENPEVVNIGIASTT--MKLNPYFLEALKAIRDRAKVKVHFHFALGQSNGI----------THPYVERFIKSYLGDS 500 (631)
T ss_dssp CCCCSCCSEEEEEEEECS--TTCCHHHHHHHHHHHHHCSSEEEEEEEESSCCGG----------GHHHHHHHHHHHHGGG
T ss_pred ccCCcCCCeEEEEECCcc--ccCCHHHHHHHHHHHHhCCCcEEEEEecCCCchh----------hHHHHHHHHHcCCCcc
Confidence 455322335677777774 688999999999999988988775 35643210 1122233445677789
Q ss_pred EEEccCCCCcCChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcCCcEEEcCccccccccc------cCceEE-EECC
Q 003962 618 FRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIV------NGKSGY-HIDP 690 (783)
Q Consensus 618 V~flG~~~~~~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~GlPVVat~~GG~~EiI~------dg~~G~-li~p 690 (783)
|.|.| ..+..+....++. +|+++-|+.+.+ |+|.+|||+||+|||+..-++.++-+. -|..++ +.+
T Consensus 501 v~F~g----~~p~~e~la~y~~-aDIfLDpfpy~G-gtTtlEALwmGVPVVTl~G~~~asRvgaSlL~~~GLpE~LIA~- 573 (631)
T 3q3e_A 501 ATAHP----HSPYHQYLRILHN-CDMMVNPFPFGN-TNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLIAN- 573 (631)
T ss_dssp EEEEC----CCCHHHHHHHHHT-CSEEECCSSSCC-SHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHTTCCGGGEES-
T ss_pred EEEcC----CCCHHHHHHHHhc-CcEEEeCCcccC-ChHHHHHHHcCCCEEeccCCcHHHHhHHHHHHhcCCCcceecC-
Confidence 99999 7778888888885 999999998755 999999999999999965544444331 244443 333
Q ss_pred CCHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-Hhcchh
Q 003962 691 YHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTG-VYGFWK 749 (783)
Q Consensus 691 ~d~e~lAeaI~~~l~~l~~dp~~~~~ms~~a~~~v~~~ysw~~~a~~ll~ly~-~~~~w~ 749 (783)
|.++++++...+. .|++.+++++++.+++.....-|+..++++.++|. .+.-|.
T Consensus 574 -d~eeYv~~Av~La----~D~~~l~~LR~~Lr~~~~~spLFd~~~~~~e~~ye~~~~~w~ 628 (631)
T 3q3e_A 574 -TVDEYVERAVRLA----ENHQERLELRRYIIENNGLNTLFTGDPRPMGQVFLEKLNAFL 628 (631)
T ss_dssp -SHHHHHHHHHHHH----HCHHHHHHHHHHHHHSCCHHHHTCSCCTHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHh----CCHHHHHHHHHHHHHHhhhCCCcchhHHHHHHHHHHHHHHHH
Confidence 7899988886555 89999999999999886443222245555555553 234443
No 52
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.01 E-value=1e-09 Score=106.75 Aligned_cols=134 Identities=13% Similarity=0.118 Sum_probs=99.7
Q ss_pred CCcEEEEEeccc---CCCCHHHHHHHHHHhHccCCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccC
Q 003962 547 NKPILFTMARLD---RVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISS 623 (783)
Q Consensus 547 ~k~iIl~vGRL~---~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~ 623 (783)
...+++++|++. +.|++..+++++.++ ++++++++++... + .+.++|++.|
T Consensus 21 ~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~~~~~g~~~~-----------~---------~~~~~v~~~~- 74 (170)
T 2o6l_A 21 NGVVVFSLGSMVSNMTEERANVIASALAQI-----PQKVLWRFDGNKP-----------D---------TLGLNTRLYK- 74 (170)
T ss_dssp TCEEEEECCSCCTTCCHHHHHHHHHHHTTS-----SSEEEEECCSSCC-----------T---------TCCTTEEEES-
T ss_pred CCEEEEECCCCcccCCHHHHHHHHHHHHhC-----CCeEEEEECCcCc-----------c---------cCCCcEEEec-
Confidence 456788999985 667777888877543 3678888876431 0 2457899999
Q ss_pred CCCcCChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcCCcEEEcCcc----ccccccccCceEEEECCC--CHHHHH
Q 003962 624 QMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKG----GPAEIIVNGKSGYHIDPY--HGEQAA 697 (783)
Q Consensus 624 ~~~~~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~GlPVVat~~G----G~~EiI~dg~~G~li~p~--d~e~lA 697 (783)
+++..++..+ . ++|++|.. +-+.|+.|||++|+|+|+.... +.++.+.+...|+.+++. ++++++
T Consensus 75 ---~~~~~~~l~~-~-~ad~~I~~----~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~~g~g~~~~~~~~~~~~l~ 145 (170)
T 2o6l_A 75 ---WIPQNDLLGH-P-KTRAFITH----GGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTDLL 145 (170)
T ss_dssp ---SCCHHHHHTS-T-TEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTTSEEECCTTTCCHHHHH
T ss_pred ---CCCHHHHhcC-C-CcCEEEEc----CCccHHHHHHHcCCCEEeccchhhHHHHHHHHHHcCCeEEeccccCCHHHHH
Confidence 6666666533 4 59999985 3468999999999999999764 456677777899999877 889999
Q ss_pred HHHHHHHHHhhCCHHHHHHHHH
Q 003962 698 EILVDFFEKCKADPSYWDKISL 719 (783)
Q Consensus 698 eaI~~~l~~l~~dp~~~~~ms~ 719 (783)
++|.+++ .|+++++++.+
T Consensus 146 ~~i~~ll----~~~~~~~~a~~ 163 (170)
T 2o6l_A 146 NALKRVI----NDPSYKENVMK 163 (170)
T ss_dssp HHHHHHH----HCHHHHHHHHH
T ss_pred HHHHHHH----cCHHHHHHHHH
Confidence 9997766 78875554433
No 53
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.03 E-value=9.8e-05 Score=88.23 Aligned_cols=183 Identities=13% Similarity=0.038 Sum_probs=134.7
Q ss_pred hhhhhccccCCCCcEEEEEecccCCCCHHHHHHHHHHhHccCCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCC
Q 003962 536 NKEHLCVLKDRNKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLN 615 (783)
Q Consensus 536 ~~~~~gll~~~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~ 615 (783)
.+..+|+ +++..++++..++. |=-...++++.++.+.-|+.+|++...... ..+.+++.+++.|+.
T Consensus 513 ~R~~~gL--p~~~v~f~~fN~~~--Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~~----------~~~~l~~~~~~~gi~ 578 (723)
T 4gyw_A 513 TRSQYGL--PEDAIVYCNFNQLY--KIDPSTLQMWANILKRVPNSVLWLLRFPAV----------GEPNIQQYAQNMGLP 578 (723)
T ss_dssp EGGGGTC--CTTSEEEECCSCGG--GCCHHHHHHHHHHHHHCSSEEEEEEETTGG----------GHHHHHHHHHHTTCC
T ss_pred chhhcCC--CCCCEEEEeCCccc--cCCHHHHHHHHHHHHhCCCCeEEEEeCcHH----------HHHHHHHHHHhcCCC
Confidence 3566788 66766666666554 445788888888888899999999886543 135677788888885
Q ss_pred -CcEEEccCCCCcCChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcCCcEEEcCcccccc-----cccc-CceEEEE
Q 003962 616 -GQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAE-----IIVN-GKSGYHI 688 (783)
Q Consensus 616 -~~V~flG~~~~~~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~GlPVVat~~GG~~E-----iI~d-g~~G~li 688 (783)
++|.|.+ +.+..+....+.. +|+++=|-.| +-|.|.+||+.||+|||+-.-..... ++.. |-.-++.
T Consensus 579 ~~r~~f~~----~~~~~~~l~~~~~-~Di~LDt~p~-~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~gl~e~ia 652 (723)
T 4gyw_A 579 QNRIIFSP----VAPKEEHVRRGQL-ADVCLDTPLC-NGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIA 652 (723)
T ss_dssp GGGEEEEE----CCCHHHHHHHGGG-CSEEECCSSS-CCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHHTCGGGBC
T ss_pred cCeEEECC----CCCHHHHHHHhCC-CeEEeCCCCc-CCHHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHcCCccccc
Confidence 6899998 6777888888885 9999988666 44789999999999999853222111 1111 1122223
Q ss_pred CCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHH
Q 003962 689 DPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEE--KYTWKIYSQRLLTLTGV 744 (783)
Q Consensus 689 ~p~d~e~lAeaI~~~l~~l~~dp~~~~~ms~~a~~~v~~--~ysw~~~a~~ll~ly~~ 744 (783)
.|.++..+...++ ..|++.+.++.+.-++.... -|+-+.+++.+++.|+.
T Consensus 653 --~~~~~Y~~~a~~l----a~d~~~l~~lr~~l~~~~~~s~l~d~~~~~~~le~a~~~ 704 (723)
T 4gyw_A 653 --KNRQEYEDIAVKL----GTDLEYLKKVRGKVWKQRISSPLFNTKQYTMELERLYLQ 704 (723)
T ss_dssp --SSHHHHHHHHHHH----HHCHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHHHHHH
Confidence 3788888777554 48999999999988887755 48999999999999875
No 54
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=98.01 E-value=0.0034 Score=71.26 Aligned_cols=70 Identities=11% Similarity=0.142 Sum_probs=46.5
Q ss_pred cCChHHHHHHHHccCc--EEEeCCCCCCCcHHHHHHHHcCCcEEEcCccc----ccccc-ccCceEEEECCC-----CHH
Q 003962 627 RVRNGELYRYICDTKG--AFVQPALYEAFGLTVVEAMTCGLPTFATCKGG----PAEII-VNGKSGYHIDPY-----HGE 694 (783)
Q Consensus 627 ~~~~~el~~~ia~aad--vfV~PS~~E~fGltvlEAMa~GlPVVat~~GG----~~EiI-~dg~~G~li~p~-----d~e 694 (783)
+++..+++ + .++ +||.= +=-.+++||+++|+|+|+-...+ .+..+ +.-..|..++.. +.+
T Consensus 346 w~Pq~~vL---~-h~~v~~fvtH----gG~~S~~Eal~~GvP~i~~P~~~DQ~~na~~l~~~~G~g~~l~~~~~~~~~~~ 417 (480)
T 2vch_A 346 WAPQAQVL---A-HPSTGGFLTH----CGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRRE 417 (480)
T ss_dssp CCCHHHHH---H-STTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTTCCEECCCCCTTSCCCHH
T ss_pred ccCHHHHh---C-CCCcCeEEec----ccchhHHHHHHcCCCEEeccccccchHHHHHHHHHhCeEEEeecccCCccCHH
Confidence 55555544 4 366 56542 22358999999999999975432 34443 455678877643 688
Q ss_pred HHHHHHHHHH
Q 003962 695 QAAEILVDFF 704 (783)
Q Consensus 695 ~lAeaI~~~l 704 (783)
+++++|.+++
T Consensus 418 ~l~~av~~vl 427 (480)
T 2vch_A 418 EVARVVKGLM 427 (480)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999997766
No 55
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=97.99 E-value=0.0019 Score=73.28 Aligned_cols=151 Identities=11% Similarity=0.057 Sum_probs=84.0
Q ss_pred CcEEEEEecccCCCCHHHHHHHHHHhHccCCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCc
Q 003962 548 KPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNR 627 (783)
Q Consensus 548 k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~ 627 (783)
..++++.|.+.. .....+.+++..+.+ .+.+++++-+.....+.. . ...+.+ .+.. .+++...+ +
T Consensus 296 ~vv~vs~GS~~~-~~~~~~~~~~~~l~~--~~~~~l~~~~~~~~~~~~-~--~l~~~~---~~~~--~~~~~v~~----~ 360 (482)
T 2pq6_A 296 SVVYVNFGSTTV-MTPEQLLEFAWGLAN--CKKSFLWIIRPDLVIGGS-V--IFSSEF---TNEI--ADRGLIAS----W 360 (482)
T ss_dssp CEEEEECCSSSC-CCHHHHHHHHHHHHH--TTCEEEEECCGGGSTTTG-G--GSCHHH---HHHH--TTTEEEES----C
T ss_pred ceEEEecCCccc-CCHHHHHHHHHHHHh--cCCcEEEEEcCCcccccc-c--cCcHhH---HHhc--CCCEEEEe----e
Confidence 456677787653 234444455444443 246666654322100000 0 000111 1122 36788888 6
Q ss_pred CChHHHHHHHHc-cCcEEEeCCCCCCCcHHHHHHHHcCCcEEEcCccc----cccccc-cCceEEEECC-CCHHHHHHHH
Q 003962 628 VRNGELYRYICD-TKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGG----PAEIIV-NGKSGYHIDP-YHGEQAAEIL 700 (783)
Q Consensus 628 ~~~~el~~~ia~-aadvfV~PS~~E~fGltvlEAMa~GlPVVat~~GG----~~EiI~-dg~~G~li~p-~d~e~lAeaI 700 (783)
++..+ +++. +.++||.= +=..++.||+++|+|+|+-...+ .+..+. .-..|..++. -+.++++++|
T Consensus 361 ~pq~~---~L~h~~~~~~vth----~G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~l~~~i 433 (482)
T 2pq6_A 361 CPQDK---VLNHPSIGGFLTH----CGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTNVKREELAKLI 433 (482)
T ss_dssp CCHHH---HHTSTTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECCSSCCHHHHHHHH
T ss_pred cCHHH---HhcCCCCCEEEec----CCcchHHHHHHcCCCEEecCcccchHHHHHHHHHHhCEEEEECCCCCHHHHHHHH
Confidence 66554 4432 23447652 23468999999999999975533 333343 4457887762 3788899999
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHH
Q 003962 701 VDFFEKCKADPSYWDKISLGGLKRI 725 (783)
Q Consensus 701 ~~~l~~l~~dp~~~~~ms~~a~~~v 725 (783)
.+++ .|++ .+++.+++++..
T Consensus 434 ~~ll----~~~~-~~~~r~~a~~l~ 453 (482)
T 2pq6_A 434 NEVI----AGDK-GKKMKQKAMELK 453 (482)
T ss_dssp HHHH----TSHH-HHHHHHHHHHHH
T ss_pred HHHH----cCCc-HHHHHHHHHHHH
Confidence 6665 7886 356666665543
No 56
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=97.90 E-value=0.00041 Score=82.06 Aligned_cols=146 Identities=12% Similarity=0.034 Sum_probs=105.2
Q ss_pred hhhh-ccccC-----CCCcEEEEEecccCCCCHHH-HHHH---HHHhHcc-------------CCCeEEEEEeCCCCCCC
Q 003962 537 KEHL-CVLKD-----RNKPILFTMARLDRVKNLTG-LVEW---YGKNAKL-------------RELVNLVVVGGDRRKES 593 (783)
Q Consensus 537 ~~~~-gll~~-----~~k~iIl~vGRL~~~Kgl~~-LieA---~~~l~~~-------------~~~~~LvIVG~g~~~~~ 593 (783)
+++. |+.-+ ++...++++-|+..+|...+ ++.. +.+++.. .....+++.|...+.
T Consensus 583 ~~~~~g~~ld~~~~~p~sLfdvq~KR~heYKRq~LniL~ii~ry~~Ik~~~~~~~~p~~~~~~~~P~~~IFaGKAaP~-- 660 (879)
T 1ygp_A 583 KKENDGVDIINREYLDDTLFDMQVKRIHEYKRQQLNVFGIIYRYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAPG-- 660 (879)
T ss_dssp HHTTTTCCCSCSTTGGGCEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHSCCEEEEEECCCCTT--
T ss_pred HHHcCCcEecCCCCCCCeeeeeeeehhhHhHHHHHHHHHHHHHHHHHHhCccccCCCcccccCCCCeEEEEeccCCCC--
Confidence 3445 66556 77888999999999999888 5554 3333333 134677777765442
Q ss_pred ccHHHHHHHHHHHHHHHH----cCCCC--cEEEccCCCCcCChHHHHHHHHccCcEEEeCCC--CCCCcHHHHHHHHcCC
Q 003962 594 KDLEEQAEMKKMYSLIDQ----YKLNG--QFRWISSQMNRVRNGELYRYICDTKGAFVQPAL--YEAFGLTVVEAMTCGL 665 (783)
Q Consensus 594 ~~~ee~~~~~~l~~li~~----~~L~~--~V~flG~~~~~~~~~el~~~ia~aadvfV~PS~--~E~fGltvlEAMa~Gl 665 (783)
+...+..++.+..+++. -.+.+ +|.|+. - .+=.+.+.|-.++|+-.+-|+ .|+.|..-+=+|.-|.
T Consensus 661 -y~~aK~iIklI~~va~~iN~Dp~v~~~LKVVFle----n-Y~VslAe~iipaaDvseqistag~EASGTsnMKfalNGa 734 (879)
T 1ygp_A 661 -YYMAKLIIKLINCVADIVNNDESIEHLLKVVFVA----D-YNVSKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGG 734 (879)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCGGGTTSEEEEEET----T-CCHHHHHHHGGGCSEEEECCCTTCCSCCHHHHHHHTTTC
T ss_pred -cHHHHHHHHHHHHHHHHhccChhhCCceEEEEeC----C-CCHHHHHHhhhhhhhhhhCCCCCccccCchhhHHHHcCC
Confidence 34444555666666552 23445 799996 2 344566677668999999887 8999999999999999
Q ss_pred cEEEcCcccccccccc--CceEEEECC
Q 003962 666 PTFATCKGGPAEIIVN--GKSGYHIDP 690 (783)
Q Consensus 666 PVVat~~GG~~EiI~d--g~~G~li~p 690 (783)
++++|-.|...|+.++ ++|+|+|-.
T Consensus 735 LtlgtlDGanvEi~e~vG~eN~fiFG~ 761 (879)
T 1ygp_A 735 LIIGTVDGANVEITREIGEDNVFLFGN 761 (879)
T ss_dssp EEEEESCTHHHHHHHHHCGGGSEEESC
T ss_pred eeeecccchhHHHHHHcCcccEEEccC
Confidence 9999999999999866 558888853
No 57
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=97.82 E-value=0.00067 Score=76.51 Aligned_cols=147 Identities=10% Similarity=0.051 Sum_probs=84.6
Q ss_pred CCCcEEEEEecccCCCCHHHHHHHHHHhHccCCCeEEEEE-eCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCC
Q 003962 546 RNKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVV-GGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQ 624 (783)
Q Consensus 546 ~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIV-G~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~ 624 (783)
++..++++.|.+... ..+.+.+++..+.+. +++++++ |......-. +.+ .++ ..+++...+
T Consensus 270 ~~~vv~vs~GS~~~~-~~~~~~~~~~~l~~~--~~~~lw~~~~~~~~~l~--------~~~---~~~--~~~~~~v~~-- 331 (456)
T 2c1x_A 270 PTSVVYISFGTVTTP-PPAEVVALSEALEAS--RVPFIWSLRDKARVHLP--------EGF---LEK--TRGYGMVVP-- 331 (456)
T ss_dssp TTCEEEEECCSSCCC-CHHHHHHHHHHHHHH--TCCEEEECCGGGGGGSC--------TTH---HHH--HTTTEEEES--
T ss_pred CcceEEEecCccccC-CHHHHHHHHHHHHhc--CCeEEEEECCcchhhCC--------HHH---Hhh--cCCceEEec--
Confidence 344567778887643 334444444444332 3455544 433110000 011 111 135788887
Q ss_pred CCcCChHHHHHHHHc-cCcEEEeCCCCCCCcHHHHHHHHcCCcEEEcCcc----ccccccccC-ceEEEECCC--CHHHH
Q 003962 625 MNRVRNGELYRYICD-TKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKG----GPAEIIVNG-KSGYHIDPY--HGEQA 696 (783)
Q Consensus 625 ~~~~~~~el~~~ia~-aadvfV~PS~~E~fGltvlEAMa~GlPVVat~~G----G~~EiI~dg-~~G~li~p~--d~e~l 696 (783)
+++..+ ++++ ++|+||.= +=.+++.||+++|+|+|+-... ..+..+.+. ..|..++.. +.+++
T Consensus 332 --w~pq~~---vL~h~~~~~fvth----~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l~~~~g~g~~l~~~~~~~~~l 402 (456)
T 2c1x_A 332 --WAPQAE---VLAHEAVGAFVTH----CGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKSGL 402 (456)
T ss_dssp --CCCHHH---HHTSTTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECGGGSCCHHHH
T ss_pred --CCCHHH---HhcCCcCCEEEec----CCcchHHHHHHhCceEEecCChhhHHHHHHHHHHHhCeEEEecCCCcCHHHH
Confidence 555544 4553 36788862 2356999999999999997543 234455555 688887633 68889
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 003962 697 AEILVDFFEKCKADPSYWDKISLGGLKR 724 (783)
Q Consensus 697 AeaI~~~l~~l~~dp~~~~~ms~~a~~~ 724 (783)
+++|.+++ .|++ .+++.+++++.
T Consensus 403 ~~~i~~ll----~~~~-~~~~r~~a~~l 425 (456)
T 2c1x_A 403 MSCFDQIL----SQEK-GKKLRENLRAL 425 (456)
T ss_dssp HHHHHHHH----HSHH-HHHHHHHHHHH
T ss_pred HHHHHHHH----CCCc-HHHHHHHHHHH
Confidence 99997666 6775 45566655544
No 58
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=97.67 E-value=0.0077 Score=67.92 Aligned_cols=134 Identities=13% Similarity=0.070 Sum_probs=75.6
Q ss_pred CCcEEEEEecccCCCCHHHHHHHHHHhHccCCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCC
Q 003962 547 NKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMN 626 (783)
Q Consensus 547 ~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~ 626 (783)
+..++++.|.+...-+...+.+++..+.+. +++++++-+.....- . +.+.+.... .+++...+
T Consensus 276 ~~vv~vs~GS~~~~~~~~~~~~~~~~l~~~--~~~~l~~~~~~~~~l--~------~~~~~~~~~---~~~~~v~~---- 338 (463)
T 2acv_A 276 KSVVFLCFGSMGVSFGPSQIREIALGLKHS--GVRFLWSNSAEKKVF--P------EGFLEWMEL---EGKGMICG---- 338 (463)
T ss_dssp TCEEEEECCSSCCCCCHHHHHHHHHHHHHH--TCEEEEECCCCGGGS--C------TTHHHHHHH---HCSEEEES----
T ss_pred CceEEEEeccccccCCHHHHHHHHHHHHhC--CCcEEEEECCCcccC--C------hhHHHhhcc---CCCEEEEc----
Confidence 345677788876323434444444444432 356666544310000 0 011111100 24677777
Q ss_pred cCChHHHHHHHHc-cCcEEEeCCCCCCCcHHHHHHHHcCCcEEEcCccc----cccc-cccCceEEEE-C---C----CC
Q 003962 627 RVRNGELYRYICD-TKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGG----PAEI-IVNGKSGYHI-D---P----YH 692 (783)
Q Consensus 627 ~~~~~el~~~ia~-aadvfV~PS~~E~fGltvlEAMa~GlPVVat~~GG----~~Ei-I~dg~~G~li-~---p----~d 692 (783)
+++..++ ++. ++|+||.= +=.++++||+++|+|+|+-...+ .+.. ++.-..|..+ + . -+
T Consensus 339 w~pq~~v---L~h~~~~~fvth----~G~~s~~Eal~~GvP~i~~P~~~dQ~~Na~~lv~~~g~g~~l~~~~~~~~~~~~ 411 (463)
T 2acv_A 339 WAPQVEV---LAHKAIGGFVSH----CGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVA 411 (463)
T ss_dssp SCCHHHH---HHSTTEEEEEEC----CCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTSCCEEESCSSCCTTCCCCC
T ss_pred cCCHHHH---hCCCccCeEEec----CCchhHHHHHHcCCCeeeccchhhhHHHHHHHHHHcCeEEEEecccCCCCcccc
Confidence 5555544 432 47788863 23469999999999999975432 3344 4555688888 2 2 37
Q ss_pred HHHHHHHHHHHH
Q 003962 693 GEQAAEILVDFF 704 (783)
Q Consensus 693 ~e~lAeaI~~~l 704 (783)
.++++++|.+++
T Consensus 412 ~~~l~~ai~~ll 423 (463)
T 2acv_A 412 AEEIEKGLKDLM 423 (463)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 888999996665
No 59
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=97.62 E-value=0.0065 Score=68.48 Aligned_cols=145 Identities=10% Similarity=0.049 Sum_probs=83.6
Q ss_pred CCcEEEEEecccCCCCHHHHHHHHHHhHccCCCeEEEEEeCCCCCCCccHHHHHHHHHH-HHHHHHcCCCCcEEEccCCC
Q 003962 547 NKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKM-YSLIDQYKLNGQFRWISSQM 625 (783)
Q Consensus 547 ~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~~ee~~~~~~l-~~li~~~~L~~~V~flG~~~ 625 (783)
+..+.++.|.+... ....+.+.+..+.+. +++++++-+... .+.+ ....++ ..+++...+
T Consensus 273 ~~vVyvsfGS~~~~-~~~~~~el~~~l~~~--~~~flw~~~~~~-----------~~~lp~~~~~~--~~~~~~vv~--- 333 (454)
T 3hbf_A 273 SSVVYISFGSVVTP-PPHELTALAESLEEC--GFPFIWSFRGDP-----------KEKLPKGFLER--TKTKGKIVA--- 333 (454)
T ss_dssp TCEEEEECCSSCCC-CHHHHHHHHHHHHHH--CCCEEEECCSCH-----------HHHSCTTHHHH--TTTTEEEES---
T ss_pred CceEEEecCCCCcC-CHHHHHHHHHHHHhC--CCeEEEEeCCcc-----------hhcCCHhHHhh--cCCceEEEe---
Confidence 34456777887642 334455554444432 345555544321 0111 011112 246788888
Q ss_pred CcCChHHHHHHHHccCc--EEEeCCCCCCCcHHHHHHHHcCCcEEEcCccc----cccccccC-ceEEEECC--CCHHHH
Q 003962 626 NRVRNGELYRYICDTKG--AFVQPALYEAFGLTVVEAMTCGLPTFATCKGG----PAEIIVNG-KSGYHIDP--YHGEQA 696 (783)
Q Consensus 626 ~~~~~~el~~~ia~aad--vfV~PS~~E~fGltvlEAMa~GlPVVat~~GG----~~EiI~dg-~~G~li~p--~d~e~l 696 (783)
+++..+++. .++ +||.= +=-.+++||+++|+|+|+-...+ .+..+.+. ..|..++. -+.+++
T Consensus 334 -w~Pq~~vL~----h~~v~~fvtH----~G~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v~~~~g~Gv~l~~~~~~~~~l 404 (454)
T 3hbf_A 334 -WAPQVEILK----HSSVGVFLTH----SGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKESI 404 (454)
T ss_dssp -SCCHHHHHH----STTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTSCSEEECGGGSCCHHHH
T ss_pred -eCCHHHHHh----hcCcCeEEec----CCcchHHHHHHcCCCEecCcccccHHHHHHHHHHhhCeeEEecCCCCCHHHH
Confidence 666665554 477 66642 12358999999999999975432 34455553 68888764 368889
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 003962 697 AEILVDFFEKCKADPSYWDKISLGGLKR 724 (783)
Q Consensus 697 AeaI~~~l~~l~~dp~~~~~ms~~a~~~ 724 (783)
+++|.+++ .|++ .++|.+++++.
T Consensus 405 ~~av~~ll----~~~~-~~~~r~~a~~l 427 (454)
T 3hbf_A 405 KKALELTM----SSEK-GGIMRQKIVKL 427 (454)
T ss_dssp HHHHHHHH----SSHH-HHHHHHHHHHH
T ss_pred HHHHHHHH----CCCh-HHHHHHHHHHH
Confidence 99997766 6642 34455555443
No 60
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=97.36 E-value=0.0079 Score=64.40 Aligned_cols=108 Identities=14% Similarity=0.084 Sum_probs=70.2
Q ss_pred hhhccccCCCC-cEEEEEec-ccCCCCHH--HHHHHHHHhHccCCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcC
Q 003962 538 EHLCVLKDRNK-PILFTMAR-LDRVKNLT--GLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYK 613 (783)
Q Consensus 538 ~~~gll~~~~k-~iIl~vGR-L~~~Kgl~--~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~ 613 (783)
+.+|+ +.++ .+++..|. ..+.|... .+.+++..+.+. +++++++|+..+ .+...++.+..+
T Consensus 172 ~~~~~--~~~~~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~~--~~~vvl~g~~~e-----------~~~~~~i~~~~~ 236 (348)
T 1psw_A 172 NQFSL--SSERPMIGFCPGAEFGPAKRWPHYHYAELAKQLIDE--GYQVVLFGSAKD-----------HEAGNEILAALN 236 (348)
T ss_dssp HHTTC--CSSSCEEEEECCCTTCGGGSCCHHHHHHHHHHHHHT--TCEEEECCCGGG-----------HHHHHHHHTTSC
T ss_pred HHhCC--CCCCcEEEEECCCCccccCCCCHHHHHHHHHHHHHC--CCeEEEEeChhh-----------HHHHHHHHHhhh
Confidence 34554 3233 45666776 55667665 888888888764 688999886532 122233333221
Q ss_pred --C-CCcEEEccCCCCcCChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcCCcEEEc
Q 003962 614 --L-NGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFAT 670 (783)
Q Consensus 614 --L-~~~V~flG~~~~~~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~GlPVVat 670 (783)
. ...+.+.| ..+..++..+++. +|++|.... |..-+ |.|+|+|+|+-
T Consensus 237 ~~~~~~~~~l~g----~~sl~e~~ali~~-a~l~I~~Ds----g~~Hl-Aaa~g~P~v~l 286 (348)
T 1psw_A 237 TEQQAWCRNLAG----ETQLDQAVILIAA-CKAIVTNDS----GLMHV-AAALNRPLVAL 286 (348)
T ss_dssp HHHHTTEEECTT----TSCHHHHHHHHHT-SSEEEEESS----HHHHH-HHHTTCCEEEE
T ss_pred hccccceEeccC----cCCHHHHHHHHHh-CCEEEecCC----HHHHH-HHHcCCCEEEE
Confidence 0 12346677 6778999999996 999998742 44444 99999999985
No 61
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=97.07 E-value=0.024 Score=59.78 Aligned_cols=94 Identities=12% Similarity=0.113 Sum_probs=61.2
Q ss_pred CcEEEEEecccCCCCHHHHHHHHHHhHccCCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCc
Q 003962 548 KPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNR 627 (783)
Q Consensus 548 k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~ 627 (783)
+.+++++|..+...-...+++++.. . .. -.|+.|.+... .+++++..++. +++...++..
T Consensus 158 ~~ILv~~GG~d~~~l~~~vl~~L~~---~-~~-i~vv~G~~~~~----------~~~l~~~~~~~---~~v~v~~~~~-- 217 (282)
T 3hbm_A 158 YDFFICMGGTDIKNLSLQIASELPK---T-KI-ISIATSSSNPN----------LKKLQKFAKLH---NNIRLFIDHE-- 217 (282)
T ss_dssp EEEEEECCSCCTTCHHHHHHHHSCT---T-SC-EEEEECTTCTT----------HHHHHHHHHTC---SSEEEEESCS--
T ss_pred CeEEEEECCCchhhHHHHHHHHhhc---C-CC-EEEEECCCchH----------HHHHHHHHhhC---CCEEEEeCHH--
Confidence 3467788887754433344554432 1 22 34566766431 34555555432 4799998543
Q ss_pred CChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcCCcEEEcC
Q 003962 628 VRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATC 671 (783)
Q Consensus 628 ~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~GlPVVat~ 671 (783)
++..+|+. ||+.|.+ -|.|+.|++++|+|+|...
T Consensus 218 ----~m~~~m~~-aDlvI~~-----gG~T~~E~~~~g~P~i~ip 251 (282)
T 3hbm_A 218 ----NIAKLMNE-SNKLIIS-----ASSLVNEALLLKANFKAIC 251 (282)
T ss_dssp ----CHHHHHHT-EEEEEEE-----SSHHHHHHHHTTCCEEEEC
T ss_pred ----HHHHHHHH-CCEEEEC-----CcHHHHHHHHcCCCEEEEe
Confidence 47778885 9999984 3689999999999999864
No 62
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=96.43 E-value=0.15 Score=55.05 Aligned_cols=105 Identities=13% Similarity=0.142 Sum_probs=70.3
Q ss_pred hccccCCCCcE-EEEEecccCCCCH--HHHHHHHHHhHccCCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCC
Q 003962 540 LCVLKDRNKPI-LFTMARLDRVKNL--TGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNG 616 (783)
Q Consensus 540 ~gll~~~~k~i-Il~vGRL~~~Kgl--~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~ 616 (783)
.|+ ++++++ ++..|.-.+.|.. +.+.+.+..+.+. +++++++|+..+ .+..+++.+..+ ..
T Consensus 179 ~g~--~~~~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~--g~~vvl~g~~~e-----------~~~~~~i~~~~~-~~ 242 (349)
T 3tov_A 179 HGL--TDTDILIGFNIGSAVPEKRWPAERFAHVADYFGRL--GYKTVFFGGPMD-----------LEMVQPVVEQME-TK 242 (349)
T ss_dssp TTC--CTTCCEEEEECCCSSGGGCCCHHHHHHHHHHHHHH--TCEEEECCCTTT-----------HHHHHHHHHTCS-SC
T ss_pred cCC--CCCCCEEEEeCCCCCccCCCCHHHHHHHHHHHHhC--CCeEEEEeCcch-----------HHHHHHHHHhcc-cc
Confidence 455 444444 4566654456655 5788888887764 578888876533 233344444444 23
Q ss_pred cEEEccCCCCcCChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcCCcEEEc
Q 003962 617 QFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFAT 670 (783)
Q Consensus 617 ~V~flG~~~~~~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~GlPVVat 670 (783)
.+.+.| ..+..|+..+++. +|++|..- .|..-+ |.++|+|+|+-
T Consensus 243 ~~~l~g----~~sl~e~~ali~~-a~~~i~~D----sG~~Hl-Aaa~g~P~v~l 286 (349)
T 3tov_A 243 PIVATG----KFQLGPLAAAMNR-CNLLITND----SGPMHV-GISQGVPIVAL 286 (349)
T ss_dssp CEECTT----CCCHHHHHHHHHT-CSEEEEES----SHHHHH-HHTTTCCEEEE
T ss_pred cEEeeC----CCCHHHHHHHHHh-CCEEEECC----CCHHHH-HHhcCCCEEEE
Confidence 466677 7788999999996 99999862 255555 99999999995
No 63
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=90.40 E-value=0.9 Score=47.88 Aligned_cols=98 Identities=14% Similarity=0.148 Sum_probs=65.4
Q ss_pred CcEEEEEecccCCCCHH--HHHHHHHHhHccCCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCC
Q 003962 548 KPILFTMARLDRVKNLT--GLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQM 625 (783)
Q Consensus 548 k~iIl~vGRL~~~Kgl~--~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~ 625 (783)
+.+++..|.=.+.|... .+.+.+..+.+ .+++++++++++. +.+..+++.+.. +++.+.|
T Consensus 179 ~~i~l~pga~~~~k~wp~~~~~~l~~~L~~--~~~~vvl~~g~~~----------e~~~~~~i~~~~---~~~~l~g--- 240 (326)
T 2gt1_A 179 EYAVFLHATTRDDKHWPEEHWRELIGLLAD--SGIRIKLPWGAPH----------EEERAKRLAEGF---AYVEVLP--- 240 (326)
T ss_dssp SEEEEECCCSSGGGSCCHHHHHHHHHHTTT--TCCEEEECCSSHH----------HHHHHHHHHTTC---TTEEECC---
T ss_pred CEEEEEeCCCCccccCCHHHHHHHHHHHHH--CCCcEEEecCCHH----------HHHHHHHHHhhC---CcccccC---
Confidence 34556666545566655 77788777765 3688888755531 223333444332 3467777
Q ss_pred CcCChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcCCcEEEc
Q 003962 626 NRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFAT 670 (783)
Q Consensus 626 ~~~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~GlPVVat 670 (783)
..+..|+..+++. +|++|..-. |..-+ |.|+|+|+|+-
T Consensus 241 -~~sl~el~ali~~-a~l~I~~DS----G~~Hl-Aaa~g~P~v~l 278 (326)
T 2gt1_A 241 -KMSLEGVARVLAG-AKFVVSVDT----GLSHL-TAALDRPNITV 278 (326)
T ss_dssp -CCCHHHHHHHHHT-CSEEEEESS----HHHHH-HHHTTCCEEEE
T ss_pred -CCCHHHHHHHHHh-CCEEEecCC----cHHHH-HHHcCCCEEEE
Confidence 6788999999996 999998632 55555 77799999985
No 64
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=84.12 E-value=0.93 Score=45.86 Aligned_cols=65 Identities=9% Similarity=-0.008 Sum_probs=42.1
Q ss_pred HHHHHHHH-ccCcEEEeCCCCCCCcHHHHHHHHcCCcEEEcCcccc--------ccccccCceEEEECCCCHHHHHHHHH
Q 003962 631 GELYRYIC-DTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGP--------AEIIVNGKSGYHIDPYHGEQAAEILV 701 (783)
Q Consensus 631 ~el~~~ia-~aadvfV~PS~~E~fGltvlEAMa~GlPVVat~~GG~--------~EiI~dg~~G~li~p~d~e~lAeaI~ 701 (783)
.++..+|+ . +|++|.= +=..|+.|++++|+|.|.-..... ++.+.+...++.+ +++.++++|.
T Consensus 123 ~~m~~~l~~~-AdlvIsh----aGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~~G~~~~~---~~~~L~~~i~ 194 (224)
T 2jzc_A 123 TKMQSIIRDY-SDLVISH----AGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYVWSC---APTETGLIAG 194 (224)
T ss_dssp SSHHHHHHHH-CSCEEES----SCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHHHSCCCEE---CSCTTTHHHH
T ss_pred chHHHHHHhc-CCEEEEC----CcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHHCCCEEEc---CHHHHHHHHH
Confidence 35777888 6 9999974 335699999999999998654321 2233333345555 3455666665
Q ss_pred HH
Q 003962 702 DF 703 (783)
Q Consensus 702 ~~ 703 (783)
++
T Consensus 195 ~l 196 (224)
T 2jzc_A 195 LR 196 (224)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 65
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=83.66 E-value=3.1 Score=49.23 Aligned_cols=135 Identities=10% Similarity=0.017 Sum_probs=73.5
Q ss_pred hhhhhccccCCCCcEEEEEecccCCC---------CHHHHHHHHHHhHccCCCeEEEEEeCCCCCCCccHHHHHHHHHHH
Q 003962 536 NKEHLCVLKDRNKPILFTMARLDRVK---------NLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMY 606 (783)
Q Consensus 536 ~~~~~gll~~~~k~iIl~vGRL~~~K---------gl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~~ee~~~~~~l~ 606 (783)
.++.+|+ ++++++|+|+-...... .+..-++.+.+.. .+++.+++-... .+.
T Consensus 528 ~~~~~~~--~~~kk~ILyaPT~r~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~li~r~Hp---------------~~~ 588 (729)
T 3l7i_A 528 IRTHLNL--PSDKKVIMYAPTWRDDEFVSKGKYLFELKIDLDNLYKEL--GDDYVILLRMHY---------------LIS 588 (729)
T ss_dssp HHHHTTC--CSSCEEEEECCCCCGGGCCGGGSSCCCCTTCHHHHHHHH--TTTEEEEECCCH---------------HHH
T ss_pred HHHHhCC--CCCCeEEEEeeeeeCCccccccccccchhhHHHHHHHHc--CCCeEEEEecCc---------------chh
Confidence 4566777 78899999998765421 1111122222221 246666654321 011
Q ss_pred HHHHHcCCCCcEEEccCCCCcCChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcCCcEEEcCc----------cccc
Q 003962 607 SLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCK----------GGPA 676 (783)
Q Consensus 607 ~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~GlPVVat~~----------GG~~ 676 (783)
......+..+.+.-.. +..++..++. .+|++|.= ++-++.|++..++|||-... |-.-
T Consensus 589 ~~~~~~~~~~~~~~~~------~~~di~~ll~-~aD~lITD-----ySSv~fD~~~l~kPiif~~~D~~~Y~~~~rg~y~ 656 (729)
T 3l7i_A 589 NALDLSGYENFAIDVS------NYNDVSELFL-ISDCLITD-----YSSVMFDYGILKRPQFFFAYDIDKYDKGLRGFYM 656 (729)
T ss_dssp TTCCCTTCTTTEEECT------TCSCHHHHHH-TCSEEEES-----SCTHHHHHGGGCCCEEEECTTTTTTTSSCCSBSS
T ss_pred ccccccccCCcEEeCC------CCcCHHHHHH-HhCEEEee-----chHHHHhHHhhCCCEEEecCCHHHHhhccCCccc
Confidence 1111112344455443 1235666676 59999963 56689999999999998621 1111
Q ss_pred cccccCceEEEECCCCHHHHHHHHHHHH
Q 003962 677 EIIVNGKSGYHIDPYHGEQAAEILVDFF 704 (783)
Q Consensus 677 EiI~dg~~G~li~p~d~e~lAeaI~~~l 704 (783)
+ ..+...|-++. |.+++.++|.+..
T Consensus 657 d-~~~~~pg~~~~--~~~eL~~~i~~~~ 681 (729)
T 3l7i_A 657 N-YMEDLPGPIYT--EPYGLAKELKNLD 681 (729)
T ss_dssp C-TTSSSSSCEES--SHHHHHHHHTTHH
T ss_pred C-hhHhCCCCeEC--CHHHHHHHHhhhh
Confidence 1 11222344444 7899988885543
No 66
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=69.44 E-value=55 Score=28.20 Aligned_cols=109 Identities=9% Similarity=0.049 Sum_probs=71.1
Q ss_pred eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHc--------cCcEEEeCCC-C
Q 003962 580 VNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICD--------TKGAFVQPAL-Y 650 (783)
Q Consensus 580 ~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~--------aadvfV~PS~-~ 650 (783)
.+++|+.+.+ .....+....+..+....|.... +..+....+.. ..|+++.-.. .
T Consensus 3 ~~ilivdd~~----------~~~~~l~~~L~~~~~~~~v~~~~------~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~ 66 (140)
T 1k68_A 3 KKIFLVEDNK----------ADIRLIQEALANSTVPHEVVTVR------DGMEAMAYLRQEGEYANASRPDLILLXLNLP 66 (140)
T ss_dssp CEEEEECCCH----------HHHHHHHHHHHTCSSCCEEEEEC------SHHHHHHHHTTCGGGGSCCCCSEEEECSSCS
T ss_pred CeEEEEeCCH----------HHHHHHHHHHHhcCCCceEEEEC------CHHHHHHHHHcccccccCCCCcEEEEecCCC
Confidence 4677777663 33456666676665433455443 34667777763 4678777443 3
Q ss_pred CCCcHHHHHHHH-----cCCcEEEc-Cccc---cccccccCceEEEECCCCHHHHHHHHHHHH
Q 003962 651 EAFGLTVVEAMT-----CGLPTFAT-CKGG---PAEIIVNGKSGYHIDPYHGEQAAEILVDFF 704 (783)
Q Consensus 651 E~fGltvlEAMa-----~GlPVVat-~~GG---~~EiI~dg~~G~li~p~d~e~lAeaI~~~l 704 (783)
+.-|+.+++.+. .++|+|.. .... ..+....|..|++..|.+.+++..+|..++
T Consensus 67 ~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 129 (140)
T 1k68_A 67 KKDGREVLAEIKSDPTLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIE 129 (140)
T ss_dssp SSCHHHHHHHHHHSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHcCcccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHH
Confidence 446777777775 46788764 3332 234456788999999999999999997765
No 67
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=68.50 E-value=51 Score=28.97 Aligned_cols=111 Identities=11% Similarity=0.111 Sum_probs=72.4
Q ss_pred CeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHc-cCcEEEeCCC-CCCCcHH
Q 003962 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICD-TKGAFVQPAL-YEAFGLT 656 (783)
Q Consensus 579 ~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~-aadvfV~PS~-~E~fGlt 656 (783)
..+++|+.+.+ .....+....+..+....|.... +..+....+.. ..|+++.-.. .+.-|+.
T Consensus 5 ~~~ILivdd~~----------~~~~~l~~~L~~~~~~~~v~~~~------~~~~a~~~l~~~~~dlii~D~~l~~~~g~~ 68 (144)
T 3kht_A 5 SKRVLVVEDNP----------DDIALIRRVLDRKDIHCQLEFVD------NGAKALYQVQQAKYDLIILDIGLPIANGFE 68 (144)
T ss_dssp CEEEEEECCCH----------HHHHHHHHHHHHTTCCEEEEEES------SHHHHHHHHTTCCCSEEEECTTCGGGCHHH
T ss_pred CCEEEEEeCCH----------HHHHHHHHHHHhcCCCeeEEEEC------CHHHHHHHhhcCCCCEEEEeCCCCCCCHHH
Confidence 46788887763 33456677777766532344443 34566666543 3567776433 3456788
Q ss_pred HHHHHHc-----CCcEEEc-Cccc---cccccccCceEEEECCC-CHHHHHHHHHHHHH
Q 003962 657 VVEAMTC-----GLPTFAT-CKGG---PAEIIVNGKSGYHIDPY-HGEQAAEILVDFFE 705 (783)
Q Consensus 657 vlEAMa~-----GlPVVat-~~GG---~~EiI~dg~~G~li~p~-d~e~lAeaI~~~l~ 705 (783)
+++.+.. ++|+|+. .... ..+.+..|..+++..|. +.+++.++|..+++
T Consensus 69 ~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~ 127 (144)
T 3kht_A 69 VMSAVRKPGANQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFS 127 (144)
T ss_dssp HHHHHHSSSTTTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHH
Confidence 8888765 6788874 3322 23445678899999999 99999999987764
No 68
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=67.49 E-value=48 Score=29.49 Aligned_cols=109 Identities=13% Similarity=0.146 Sum_probs=72.6
Q ss_pred eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHH----------ccCcEEEeCC-
Q 003962 580 VNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYIC----------DTKGAFVQPA- 648 (783)
Q Consensus 580 ~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia----------~aadvfV~PS- 648 (783)
.+++||.+.+ .....+....+..+....|.... +..+....+. ...|+++.-.
T Consensus 5 ~~ILivddd~----------~~~~~l~~~L~~~g~~~~v~~~~------~~~~al~~l~~~~~~~~~~~~~~dliilD~~ 68 (152)
T 3heb_A 5 VTIVMIEDDL----------GHARLIEKNIRRAGVNNEIIAFT------DGTSALNYLFGDDKSGRVSAGRAQLVLLDLN 68 (152)
T ss_dssp CEEEEECCCH----------HHHHHHHHHHHHTTCCCCEEEES------SHHHHHHHHHCTTSSSGGGTTCBEEEEECSB
T ss_pred ceEEEEeCCH----------HHHHHHHHHHHhCCCcceEEEeC------CHHHHHHHHhccccccccccCCCCEEEEeCC
Confidence 5678887764 34566777777777544566554 3456667663 2367777643
Q ss_pred CCCCCcHHHHHHHHc-----CCcEEEc-Cccc---cccccccCceEEEECCCCHHHHHHHHHHHH
Q 003962 649 LYEAFGLTVVEAMTC-----GLPTFAT-CKGG---PAEIIVNGKSGYHIDPYHGEQAAEILVDFF 704 (783)
Q Consensus 649 ~~E~fGltvlEAMa~-----GlPVVat-~~GG---~~EiI~dg~~G~li~p~d~e~lAeaI~~~l 704 (783)
..+.-|+.+++.+.. ++|+|.. .... ..+....|..+++..|.+.+++.++|.++.
T Consensus 69 l~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 133 (152)
T 3heb_A 69 LPDMTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLG 133 (152)
T ss_dssp CSSSBHHHHHHHHHHSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHhcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 345568888887765 6788774 3332 234556788999999999999999986553
No 69
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=63.92 E-value=1.8e+02 Score=32.11 Aligned_cols=139 Identities=15% Similarity=0.236 Sum_probs=78.7
Q ss_pred EEEEEecccCCCCHHHHHHHHHHhHccCCCeEEEEEeCCCCCCCccHHHH-----------HHHHHHHHHHHHcCCCCcE
Q 003962 550 ILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQ-----------AEMKKMYSLIDQYKLNGQF 618 (783)
Q Consensus 550 iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~~ee~-----------~~~~~l~~li~~~~L~~~V 618 (783)
.++++|. .+++..+.+.++...+ +--+.+|+|+|.-... .... ...++.+.+++++ ++-+
T Consensus 211 ~v~~i~~---~~~i~~~~~~~g~~~~--~~~~v~I~GgG~ig~~--lA~~L~~~~~v~iIE~d~~r~~~la~~l--~~~~ 281 (461)
T 4g65_A 211 EVFFVAA---SNHIRSVMSELQRLEK--PYRRIMIVGGGNIGAS--LAKRLEQTYSVKLIERNLQRAEKLSEEL--ENTI 281 (461)
T ss_dssp EEEEEEE---TTTHHHHHHHTTGGGS--CCCEEEEECCSHHHHH--HHHHHTTTSEEEEEESCHHHHHHHHHHC--TTSE
T ss_pred EEEEEec---cchHHHHHHhhccccc--cccEEEEEcchHHHHH--HHHHhhhcCceEEEecCHHHHHHHHHHC--CCce
Confidence 4556664 5677888887765443 3347888888832000 0000 0123445555554 3566
Q ss_pred EEccCCCCcCChHHHHH--HHHccCcEEEeCCC-CCCCcHHHHHHHHcCCcEEEc--CccccccccccCceEEEECCCCH
Q 003962 619 RWISSQMNRVRNGELYR--YICDTKGAFVQPAL-YEAFGLTVVEAMTCGLPTFAT--CKGGPAEIIVNGKSGYHIDPYHG 693 (783)
Q Consensus 619 ~flG~~~~~~~~~el~~--~ia~aadvfV~PS~-~E~fGltvlEAMa~GlPVVat--~~GG~~EiI~dg~~G~li~p~d~ 693 (783)
...|. ....++.. -+. .+|+||..+- .|.-=++.+-|-..|.+-+.+ +.....++++...-...+.| .
T Consensus 282 Vi~GD----~td~~~L~ee~i~-~~D~~ia~T~~De~Ni~~~llAk~~gv~kvIa~vn~~~~~~l~~~~gid~visp--~ 354 (461)
T 4g65_A 282 VFCGD----AADQELLTEENID-QVDVFIALTNEDETNIMSAMLAKRMGAKKVMVLIQRGAYVDLVQGGVIDVAISP--Q 354 (461)
T ss_dssp EEESC----TTCHHHHHHTTGG-GCSEEEECCSCHHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHCSSSSCEEECH--H
T ss_pred EEecc----ccchhhHhhcCch-hhcEEEEcccCcHHHHHHHHHHHHcCCccccccccccchhhhhhccccceeeCH--H
Confidence 77783 23344443 234 4888988665 344445678888899887776 44555666655545556654 2
Q ss_pred HHHHHHHHHHH
Q 003962 694 EQAAEILVDFF 704 (783)
Q Consensus 694 e~lAeaI~~~l 704 (783)
...+..|.+.+
T Consensus 355 ~~~a~~I~~~i 365 (461)
T 4g65_A 355 QATISALLTHV 365 (461)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 34556665444
No 70
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=62.79 E-value=72 Score=27.81 Aligned_cols=110 Identities=11% Similarity=0.143 Sum_probs=71.5
Q ss_pred CeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHH-----------ccCcEEEeC
Q 003962 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYIC-----------DTKGAFVQP 647 (783)
Q Consensus 579 ~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia-----------~aadvfV~P 647 (783)
..+++|+.+.+ .....+....+..+....|.... +..+....+. ...|+++.-
T Consensus 6 ~~~iLivdd~~----------~~~~~l~~~L~~~g~~~~v~~~~------~~~~al~~l~~~~~~~~~~~~~~~dlvi~D 69 (149)
T 1k66_A 6 TQPLLVVEDSD----------EDFSTFQRLLQREGVVNPIYRCI------TGDQALDFLYQTGSYCNPDIAPRPAVILLD 69 (149)
T ss_dssp TSCEEEECCCH----------HHHHHHHHHHHHTTBCSCEEEEC------SHHHHHHHHHTCCSSSCGGGCCCCSEEEEC
T ss_pred CccEEEEECCH----------HHHHHHHHHHHHcCCCceEEEEC------CHHHHHHHHHhcccccCcccCCCCcEEEEE
Confidence 34677777663 23456666777766433455543 3466677765 346777774
Q ss_pred CC-CCCCcHHHHHHHH-----cCCcEEEc-Cccc---cccccccCceEEEECCCCHHHHHHHHHHHH
Q 003962 648 AL-YEAFGLTVVEAMT-----CGLPTFAT-CKGG---PAEIIVNGKSGYHIDPYHGEQAAEILVDFF 704 (783)
Q Consensus 648 S~-~E~fGltvlEAMa-----~GlPVVat-~~GG---~~EiI~dg~~G~li~p~d~e~lAeaI~~~l 704 (783)
.. .+.-|+.+++.+. ..+|+|.. .... ..+....|..+++..|.+.+++.++|..++
T Consensus 70 ~~l~~~~g~~~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 136 (149)
T 1k66_A 70 LNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFI 136 (149)
T ss_dssp SCCSSSCHHHHHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 43 3446778888775 45787764 3332 233456788999999999999999997765
No 71
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=62.44 E-value=56 Score=28.73 Aligned_cols=110 Identities=10% Similarity=0.135 Sum_probs=70.3
Q ss_pred CeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHc-cCcEEEeCC-CCCCCcHH
Q 003962 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICD-TKGAFVQPA-LYEAFGLT 656 (783)
Q Consensus 579 ~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~-aadvfV~PS-~~E~fGlt 656 (783)
..+++|+.+.+. ....+.......+. .|.... +..+....+.. ..|++++-. ..+.-|+.
T Consensus 8 ~~~iLivd~~~~----------~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlii~d~~l~~~~g~~ 69 (147)
T 2zay_A 8 WWRIMLVDTQLP----------ALAASISALSQEGF--DIIQCG------NAIEAVPVAVKTHPHLIITEANMPKISGMD 69 (147)
T ss_dssp CEEEEEECTTGG----------GGHHHHHHHHHHTE--EEEEES------SHHHHHHHHHHHCCSEEEEESCCSSSCHHH
T ss_pred CceEEEEeCCHH----------HHHHHHHHHHHcCC--eEEEeC------CHHHHHHHHHcCCCCEEEEcCCCCCCCHHH
Confidence 467888887754 23455555655553 344332 34555555542 367777643 33456788
Q ss_pred HHHHHHc-----CCcEEE-cCcccc---ccccccCceEEEECCCCHHHHHHHHHHHHHH
Q 003962 657 VVEAMTC-----GLPTFA-TCKGGP---AEIIVNGKSGYHIDPYHGEQAAEILVDFFEK 706 (783)
Q Consensus 657 vlEAMa~-----GlPVVa-t~~GG~---~EiI~dg~~G~li~p~d~e~lAeaI~~~l~~ 706 (783)
+++.+.. ++|+|. |..... .+.+..|..+++..|.+.+++..+|..++..
T Consensus 70 ~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~ 128 (147)
T 2zay_A 70 LFNSLKKNPQTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKL 128 (147)
T ss_dssp HHHHHHTSTTTTTSCEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcccCCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 8888764 678876 333332 3345678899999999999999999877643
No 72
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=57.72 E-value=1.5e+02 Score=31.00 Aligned_cols=149 Identities=11% Similarity=-0.044 Sum_probs=88.9
Q ss_pred cEEEEEecccCCCCHHHHHHHHHHhHccCCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCC-CcEEEccCCCCc
Q 003962 549 PILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLN-GQFRWISSQMNR 627 (783)
Q Consensus 549 ~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~-~~V~flG~~~~~ 627 (783)
+.++.+..=.+.|.+..|++++++.+. .+++-..|.|.. . .-....+.+..|+. ..|.|.|
T Consensus 116 ~~~lvv~~ds~~~tl~dL~~~ak~~p~---~~~~g~~g~Gs~---------~-hl~~~~l~~~~Gi~~~~Vpy~G----- 177 (314)
T 2dvz_A 116 ANVVAVNPKFPAKDFKGFLEELKKNPG---KYSYGSSGTCGV---------L-HLMGESFKMATGTDIVHVPYKG----- 177 (314)
T ss_dssp CEEEEECTTSSCSSHHHHHHHHHTSTT---TCEEEESCTTSH---------H-HHHHHHHHHHHTCCCEEEECSS-----
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHhCCC---cEEEeCCCCCcH---------H-HHHHHHHHHHhCCCeEEcccCC-----
Confidence 455666655689999999988765432 244444433321 0 11123344556664 2344444
Q ss_pred CChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcCCc-EEEc----------Ccc-----ccccccccCceEEEECCC
Q 003962 628 VRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLP-TFAT----------CKG-----GPAEIIVNGKSGYHIDPY 691 (783)
Q Consensus 628 ~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~GlP-VVat----------~~G-----G~~EiI~dg~~G~li~p~ 691 (783)
..+.+..++....|+.+... -.+.+....|.- +++. +++ |..++....-.|+.++.+
T Consensus 178 -~~~a~~al~~G~vD~~~~~~------~~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g 250 (314)
T 2dvz_A 178 -SGPAVADAVGGQIELIFDNL------PSSMPQIQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKG 250 (314)
T ss_dssp -HHHHHHHHHHTSSSEEEEEH------HHHHHHHHTTSSEEEEEESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEEETT
T ss_pred -HHHHHHHHHcCCceEEEEcH------HHHHHHHHcCCEEEEEecCccccccCCCCCCHHhcCCCceEEeEEEEEEEcCC
Confidence 23566677777788887642 245666677742 3321 111 111121122368888888
Q ss_pred CHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 003962 692 HGEQAAEILVDFFEKCKADPSYWDKISLGGL 722 (783)
Q Consensus 692 d~e~lAeaI~~~l~~l~~dp~~~~~ms~~a~ 722 (783)
.++++.++|.+.+.+...||+..+.+.+.+.
T Consensus 251 ~p~~vv~~l~~al~~~~~~p~~~~~~~~~g~ 281 (314)
T 2dvz_A 251 TPMDVVNKLRDAAVVALKDPKVIKALDDQGS 281 (314)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHHTE
T ss_pred CCHHHHHHHHHHHHHHHcCHHHHHHHHHCCC
Confidence 8999999999999999999998877765543
No 73
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=57.49 E-value=5.6 Score=40.90 Aligned_cols=33 Identities=15% Similarity=0.421 Sum_probs=26.4
Q ss_pred ceEEEEcccccccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHCCCceeeceeEEeCC
Q 003962 255 FNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRL 316 (783)
Q Consensus 255 ~rI~iis~h~~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~GheV~~~i~VvT~~ 316 (783)
|||+|..-.|+.| +.|++.|.++||+|+ +++|.
T Consensus 1 MkILVTGatGfIG-------------------------~~L~~~L~~~G~~V~----~l~R~ 33 (298)
T 4b4o_A 1 MRVLVGGGTGFIG-------------------------TALTQLLNARGHEVT----LVSRK 33 (298)
T ss_dssp CEEEEETTTSHHH-------------------------HHHHHHHHHTTCEEE----EEESS
T ss_pred CEEEEECCCCHHH-------------------------HHHHHHHHHCCCEEE----EEECC
Confidence 8999887777743 267778899999999 88875
No 74
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=56.50 E-value=1.5e+02 Score=30.96 Aligned_cols=149 Identities=15% Similarity=0.140 Sum_probs=88.7
Q ss_pred cEEEEEecccCCCCHHHHHHHHHHhHccCCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCC-cEEEccCCCCc
Q 003962 549 PILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNG-QFRWISSQMNR 627 (783)
Q Consensus 549 ~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~-~V~flG~~~~~ 627 (783)
+.++.+..=.+.|.+..|++++++.+. .+++-..|.|.. . .-....+.+..|+.- .|.|.|
T Consensus 112 ~~~lvv~~ds~~~sl~dL~~~ak~~p~---~~~~g~~g~Gs~---------~-hl~~~~l~~~~Gi~~~~Vpy~G----- 173 (312)
T 2f5x_A 112 PMTIIARGDFPPNNIKELAEYVKKNAD---KISLANAGIGAA---------S-HLCGTMLVEALGVNLLTIPYKG----- 173 (312)
T ss_dssp EEEEEECTTCSCCSHHHHHHHHHHHGG---GCEEEESSTTSH---------H-HHHHHHHHHHHTCCCEEEECSS-----
T ss_pred cEEEEEeCCCCCCCHHHHHHHHHhCCC---ceEEeCCCCCcH---------H-HHHHHHHHHHHCCCeEEeccCC-----
Confidence 455555555689999999999887654 234433333321 0 111233445566642 344444
Q ss_pred CChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcCCc-EEEc----------Ccc-----ccccccccCceEEEECCC
Q 003962 628 VRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLP-TFAT----------CKG-----GPAEIIVNGKSGYHIDPY 691 (783)
Q Consensus 628 ~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~GlP-VVat----------~~G-----G~~EiI~dg~~G~li~p~ 691 (783)
..+.+..++....|+.+... -++.+....|.- +++. +++ |..++....-.|+.++.+
T Consensus 174 -~~~a~~aL~~G~VD~~~~~~------~~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~E~G~~~~~~~~w~gl~ap~g 246 (312)
T 2f5x_A 174 -TAPAMNDLLGKQVDLMCDQT------TNTTQQITSGKVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKG 246 (312)
T ss_dssp -HHHHHHHHHTTSSCEEEEEH------HHHHHHHHTTSSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEETT
T ss_pred -hHHHHHHHHcCCccEEEech------HHHHHHHHcCCeEEEEEcCccchhhcCCCCCHhhcCCCCeeEEEEEEEEEcCC
Confidence 23556667776788877642 245666677742 3332 111 111121122368888888
Q ss_pred CHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 003962 692 HGEQAAEILVDFFEKCKADPSYWDKISLGGL 722 (783)
Q Consensus 692 d~e~lAeaI~~~l~~l~~dp~~~~~ms~~a~ 722 (783)
.++++.++|.+.+.+...||+..+.+.+.+.
T Consensus 247 ~p~~vv~~l~~al~~~~~~p~~~~~~~~~g~ 277 (312)
T 2f5x_A 247 TPKPVVDKLVKSLQAGLADPKFQERMKQLGA 277 (312)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHcCHHHHHHHHHCCC
Confidence 8999999999999999999998777655443
No 75
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=56.31 E-value=1e+02 Score=26.86 Aligned_cols=107 Identities=11% Similarity=0.131 Sum_probs=70.1
Q ss_pred eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHc--cCcEEEeCCCC-C-CCcH
Q 003962 580 VNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICD--TKGAFVQPALY-E-AFGL 655 (783)
Q Consensus 580 ~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~--aadvfV~PS~~-E-~fGl 655 (783)
.+++|+.+.+ .....+....+..+. .|.... +..+....+.. ..|+++.-... + .-|+
T Consensus 6 ~~ilivdd~~----------~~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~ 67 (140)
T 3h5i_A 6 KKILIVEDSK----------FQAKTIANILNKYGY--TVEIAL------TGEAAVEKVSGGWYPDLILMDIELGEGMDGV 67 (140)
T ss_dssp CEEEEECSCH----------HHHHHHHHHHHHTTC--EEEEES------SHHHHHHHHHTTCCCSEEEEESSCSSSCCHH
T ss_pred cEEEEEeCCH----------HHHHHHHHHHHHcCC--EEEEec------ChHHHHHHHhcCCCCCEEEEeccCCCCCCHH
Confidence 5678887764 334566677776653 344332 34666666653 35777775433 3 5677
Q ss_pred HHHHHHH--cCCcEEEc-Cccc---cccccccCceEEEECCCCHHHHHHHHHHHH
Q 003962 656 TVVEAMT--CGLPTFAT-CKGG---PAEIIVNGKSGYHIDPYHGEQAAEILVDFF 704 (783)
Q Consensus 656 tvlEAMa--~GlPVVat-~~GG---~~EiI~dg~~G~li~p~d~e~lAeaI~~~l 704 (783)
.+++.+. ..+|+|.. .... ..+....|..+++..|.+.+++..+|..++
T Consensus 68 ~~~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l 122 (140)
T 3h5i_A 68 QTALAIQQISELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMAL 122 (140)
T ss_dssp HHHHHHHHHCCCCEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 7776665 47888873 3322 334556788999999999999999997766
No 76
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=55.22 E-value=86 Score=27.23 Aligned_cols=107 Identities=7% Similarity=0.081 Sum_probs=69.6
Q ss_pred eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHH-------ccCcEEEeCCC-CC
Q 003962 580 VNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYIC-------DTKGAFVQPAL-YE 651 (783)
Q Consensus 580 ~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia-------~aadvfV~PS~-~E 651 (783)
.+++|+.+.+ .....+....+..+....|.... +..+....+. ...|+++.-.. .+
T Consensus 8 ~~ILivdd~~----------~~~~~l~~~L~~~g~~~~v~~~~------~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~ 71 (143)
T 2qvg_A 8 VDILYLEDDE----------VDIQSVERVFHKISSLIKIEIAK------SGNQALDMLYGRNKENKIHPKLILLDINIPK 71 (143)
T ss_dssp CSEEEECCCH----------HHHHHHHHHHHHHCTTCCEEEES------SHHHHHHHHHTCTTCCCCCCSEEEEETTCTT
T ss_pred CeEEEEeCCH----------HHHHHHHHHHHHhCCCceEEEEC------CHHHHHHHHHhcccccCCCCCEEEEecCCCC
Confidence 4677787764 33456667777766533566554 3466677775 24677776433 34
Q ss_pred CCcHHHHHHHH-----cCCcEEEc-Ccc---ccccccccCceEEEECCCCHHHHHHHHHH
Q 003962 652 AFGLTVVEAMT-----CGLPTFAT-CKG---GPAEIIVNGKSGYHIDPYHGEQAAEILVD 702 (783)
Q Consensus 652 ~fGltvlEAMa-----~GlPVVat-~~G---G~~EiI~dg~~G~li~p~d~e~lAeaI~~ 702 (783)
.-|+.+++.+. ..+|+|.. ... ...+....|..+++..|.+.+++.+++..
T Consensus 72 ~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~ 131 (143)
T 2qvg_A 72 MNGIEFLKELRDDSSFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWI 131 (143)
T ss_dssp SCHHHHHHHHTTSGGGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCccccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHH
Confidence 45777887775 46787764 332 22444567889999999999999888643
No 77
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=55.19 E-value=59 Score=28.25 Aligned_cols=106 Identities=6% Similarity=0.010 Sum_probs=65.9
Q ss_pred CCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHc-cCcEEEeCCCCCCCcHH
Q 003962 578 ELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICD-TKGAFVQPALYEAFGLT 656 (783)
Q Consensus 578 ~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~-aadvfV~PS~~E~fGlt 656 (783)
...+++|+.+.+ .....+....+..+. .|.... +..+....+.. ..|++++| +.-|+.
T Consensus 17 ~~~~ilivdd~~----------~~~~~l~~~L~~~g~--~v~~~~------~~~~al~~l~~~~~dlvi~~---~~~g~~ 75 (137)
T 2pln_A 17 GSMRVLLIEKNS----------VLGGEIEKGLNVKGF--MADVTE------SLEDGEYLMDIRNYDLVMVS---DKNALS 75 (137)
T ss_dssp TCSEEEEECSCH----------HHHHHHHHHHHHTTC--EEEEES------CHHHHHHHHHHSCCSEEEEC---STTHHH
T ss_pred CCCeEEEEeCCH----------HHHHHHHHHHHHcCc--EEEEeC------CHHHHHHHHHcCCCCEEEEc---CccHHH
Confidence 346778887763 234556666666553 454332 33455555542 35777733 345666
Q ss_pred HHHHHHc---CCcEEEc-Cccc---cccccccCceEEEECCC-CHHHHHHHHHHHH
Q 003962 657 VVEAMTC---GLPTFAT-CKGG---PAEIIVNGKSGYHIDPY-HGEQAAEILVDFF 704 (783)
Q Consensus 657 vlEAMa~---GlPVVat-~~GG---~~EiI~dg~~G~li~p~-d~e~lAeaI~~~l 704 (783)
+++.+.. .+|+|.. .... ..+.+..|..+++..|. +.+++..+|..++
T Consensus 76 ~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~ 131 (137)
T 2pln_A 76 FVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARL 131 (137)
T ss_dssp HHHHHHHHSTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHH
Confidence 6666653 7888774 3332 23445678899999999 9999999996654
No 78
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=54.43 E-value=5.7 Score=40.42 Aligned_cols=35 Identities=23% Similarity=0.228 Sum_probs=25.5
Q ss_pred CCcceEEEEcccccccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHCCCceeeceeEEeCC
Q 003962 252 PMVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRL 316 (783)
Q Consensus 252 pm~~rI~iis~h~~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~GheV~~~i~VvT~~ 316 (783)
+|+|||+|... |+.| ..+++.|.++||+|. ++++.
T Consensus 3 ~m~~~ilVtGa-G~iG-------------------------~~l~~~L~~~g~~V~----~~~r~ 37 (286)
T 3ius_A 3 AMTGTLLSFGH-GYTA-------------------------RVLSRALAPQGWRII----GTSRN 37 (286)
T ss_dssp --CCEEEEETC-CHHH-------------------------HHHHHHHGGGTCEEE----EEESC
T ss_pred CCcCcEEEECC-cHHH-------------------------HHHHHHHHHCCCEEE----EEEcC
Confidence 68899999975 6643 156677888999998 88875
No 79
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=52.91 E-value=1.1e+02 Score=26.36 Aligned_cols=109 Identities=7% Similarity=0.064 Sum_probs=70.6
Q ss_pred CeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHc-cCcEEEeCCC-CCCCcHH
Q 003962 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICD-TKGAFVQPAL-YEAFGLT 656 (783)
Q Consensus 579 ~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~-aadvfV~PS~-~E~fGlt 656 (783)
..+++|+.+.+ .....+....++.+. .|.... +..+....+.. ..|+++.-.. .+.-|+.
T Consensus 6 ~~~iLivdd~~----------~~~~~l~~~l~~~g~--~v~~~~------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~ 67 (140)
T 3grc_A 6 RPRILICEDDP----------DIARLLNLMLEKGGF--DSDMVH------SAAQALEQVARRPYAAMTVDLNLPDQDGVS 67 (140)
T ss_dssp CSEEEEECSCH----------HHHHHHHHHHHHTTC--EEEEEC------SHHHHHHHHHHSCCSEEEECSCCSSSCHHH
T ss_pred CCCEEEEcCCH----------HHHHHHHHHHHHCCC--eEEEEC------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHH
Confidence 35777887663 234556666666554 344433 34555555542 3577776433 4556788
Q ss_pred HHHHHHc-----CCcEEEc-Ccccc---c-cccccCceEEEECCCCHHHHHHHHHHHHH
Q 003962 657 VVEAMTC-----GLPTFAT-CKGGP---A-EIIVNGKSGYHIDPYHGEQAAEILVDFFE 705 (783)
Q Consensus 657 vlEAMa~-----GlPVVat-~~GG~---~-EiI~dg~~G~li~p~d~e~lAeaI~~~l~ 705 (783)
+++.+.. .+|+|.. ..... . +.+..|..+++..|.+.+++..+|..+++
T Consensus 68 ~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~ 126 (140)
T 3grc_A 68 LIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAID 126 (140)
T ss_dssp HHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 8888765 6788874 33322 2 55667889999999999999999977764
No 80
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=50.82 E-value=65 Score=32.87 Aligned_cols=38 Identities=16% Similarity=0.288 Sum_probs=26.5
Q ss_pred cceEEEEcccccccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHCCCceeeceeEEeCCCC
Q 003962 254 VFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLP 318 (783)
Q Consensus 254 ~~rI~iis~h~~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~GheV~~~i~VvT~~~~ 318 (783)
+|||++-...|+.. ..+. .|++.|++.| +|. |+++...
T Consensus 1 ~M~ILlTNDDGi~a--------------pGi~--------aL~~~l~~~g-~V~----VVAP~~~ 38 (251)
T 2phj_A 1 MPTFLLVNDDGYFS--------------PGIN--------ALREALKSLG-RVV----VVAPDRN 38 (251)
T ss_dssp -CEEEEECSSCTTC--------------HHHH--------HHHHHHTTTS-EEE----EEEESSC
T ss_pred CCEEEEECCCCCCC--------------HHHH--------HHHHHHHhcC-CEE----EEecCCC
Confidence 38999999888732 2344 4566678888 888 8887643
No 81
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=48.39 E-value=1.5e+02 Score=26.37 Aligned_cols=111 Identities=9% Similarity=0.163 Sum_probs=71.2
Q ss_pred CeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHc-cCcEEEeCC-CCCCCcHH
Q 003962 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICD-TKGAFVQPA-LYEAFGLT 656 (783)
Q Consensus 579 ~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~-aadvfV~PS-~~E~fGlt 656 (783)
..+++|+.+.+ .....+....+..+. .|.... +..+....+.. ..|++++-. ..+.-|+.
T Consensus 7 ~~~ILivdd~~----------~~~~~l~~~L~~~g~--~v~~~~------~~~~al~~l~~~~~dlii~D~~l~~~~g~~ 68 (154)
T 3gt7_A 7 AGEILIVEDSP----------TQAEHLKHILEETGY--QTEHVR------NGREAVRFLSLTRPDLIISDVLMPEMDGYA 68 (154)
T ss_dssp CCEEEEECSCH----------HHHHHHHHHHHTTTC--EEEEES------SHHHHHHHHTTCCCSEEEEESCCSSSCHHH
T ss_pred CCcEEEEeCCH----------HHHHHHHHHHHHCCC--EEEEeC------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHH
Confidence 35778887764 234556666666553 343332 34566666643 356776643 34456788
Q ss_pred HHHHHH-----cCCcEEEc-Cccc---cccccccCceEEEECCCCHHHHHHHHHHHHHHh
Q 003962 657 VVEAMT-----CGLPTFAT-CKGG---PAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKC 707 (783)
Q Consensus 657 vlEAMa-----~GlPVVat-~~GG---~~EiI~dg~~G~li~p~d~e~lAeaI~~~l~~l 707 (783)
+++.+. ..+|+|+. .... ..+.+..|..+++..|.+.+++..+|..++...
T Consensus 69 ~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~ 128 (154)
T 3gt7_A 69 LCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGV 128 (154)
T ss_dssp HHHHHHHSTTTTTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCcCCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 888775 36788773 3332 234456788999999999999999998877543
No 82
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=46.92 E-value=1.3e+02 Score=31.18 Aligned_cols=149 Identities=17% Similarity=0.069 Sum_probs=85.8
Q ss_pred cEEEEEecccCCCCHHHHHHHHHHhHccCCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCC-CcEEEccCCCCc
Q 003962 549 PILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLN-GQFRWISSQMNR 627 (783)
Q Consensus 549 ~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~-~~V~flG~~~~~ 627 (783)
+.++.+..=.+.|.+..|++++++.+. .+++-..|.|.. . .-....+.+..|+. .+|.|.|
T Consensus 103 ~~~lvv~~~s~~~sl~dL~~~ak~~p~---~~~~g~~g~Gs~---------~-hl~~~~l~~~~G~~~~~Vpy~g----- 164 (301)
T 2qpq_A 103 PSVFVVPAGSKYKTLGELMAAAKQTNT---QVTYGSCGNGTP---------Q-HLAGELLNVSAKTHMVHVPYKG----- 164 (301)
T ss_dssp EEEEEEETTCSCCSHHHHHHHTCSSSC---CCEEEESSTTSH---------H-HHHHHHHHHHHTCCCEEEECSS-----
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhCCC---ceEEecCCCCcH---------H-HHHHHHHHHHhCCCeEEeccCC-----
Confidence 445555555688999999887654321 234433332321 0 11223344456664 2344544
Q ss_pred CChHHHHHHHHccCcEEEeCCCCCCCcHHHHHHHHcCCc-EEE-c---------Ccc-----ccccccccCceEEEECCC
Q 003962 628 VRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLP-TFA-T---------CKG-----GPAEIIVNGKSGYHIDPY 691 (783)
Q Consensus 628 ~~~~el~~~ia~aadvfV~PS~~E~fGltvlEAMa~GlP-VVa-t---------~~G-----G~~EiI~dg~~G~li~p~ 691 (783)
..+.+..++....|+.+... -++.+....|.- +++ + +++ |...+....-.|+.++.+
T Consensus 165 -~~~a~~al~~G~vD~~~~~~------~~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g 237 (301)
T 2qpq_A 165 -CGPALNDVLGSQIGLAVVTA------SSAIPFIKAGKLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGA 237 (301)
T ss_dssp -HHHHHHHHHTTSSSCEEEEH------HHHHHHHHTTSEEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEETT
T ss_pred -hHHHHHHHHCCCccEEEEcH------HHHHHHHhcCCeEEEEEcCCccccccCCCCChHHhCCCceEEEeEEEEEecCC
Confidence 23556666666678777641 245666677742 232 1 111 111121122368888888
Q ss_pred CHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 003962 692 HGEQAAEILVDFFEKCKADPSYWDKISLGGL 722 (783)
Q Consensus 692 d~e~lAeaI~~~l~~l~~dp~~~~~ms~~a~ 722 (783)
.++++.++|.+.+.+...||+..+.+.+.+.
T Consensus 238 ~p~~vv~~l~~al~~~~~~~~~~~~~~~~g~ 268 (301)
T 2qpq_A 238 TPMAVRQKLYDGIAKVMQRDDVQKKLADLGY 268 (301)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHcCHHHHHHHHHCCC
Confidence 8999999999999999999998877765543
No 83
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=46.59 E-value=1.4e+02 Score=25.75 Aligned_cols=107 Identities=9% Similarity=0.155 Sum_probs=68.9
Q ss_pred eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHH---ccCcEEEeCC-CCCCCcH
Q 003962 580 VNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYIC---DTKGAFVQPA-LYEAFGL 655 (783)
Q Consensus 580 ~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia---~aadvfV~PS-~~E~fGl 655 (783)
.+++|+.+.+ ...+.+....+..+. .|.... +..+....+. ...|+++.-. ..+.-|+
T Consensus 4 ~~ilivdd~~----------~~~~~l~~~l~~~g~--~v~~~~------~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~ 65 (143)
T 3jte_A 4 AKILVIDDES----------TILQNIKFLLEIDGN--EVLTAS------SSTEGLRIFTENCNSIDVVITDMKMPKLSGM 65 (143)
T ss_dssp CEEEEECSCH----------HHHHHHHHHHHHTTC--EEEEES------SHHHHHHHHHHTTTTCCEEEEESCCSSSCHH
T ss_pred CEEEEEcCCH----------HHHHHHHHHHHhCCc--eEEEeC------CHHHHHHHHHhCCCCCCEEEEeCCCCCCcHH
Confidence 4677887763 334566666766653 344332 3456666665 2467777643 3455677
Q ss_pred HHHHHHHc---CCcEEEc-Cccc---cccccccCceEEEECCCCHHHHHHHHHHHH
Q 003962 656 TVVEAMTC---GLPTFAT-CKGG---PAEIIVNGKSGYHIDPYHGEQAAEILVDFF 704 (783)
Q Consensus 656 tvlEAMa~---GlPVVat-~~GG---~~EiI~dg~~G~li~p~d~e~lAeaI~~~l 704 (783)
.+++.+.. .+|+|.. .... ..+.+..|..+++..|.+.+++..+|..++
T Consensus 66 ~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 121 (143)
T 3jte_A 66 DILREIKKITPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAI 121 (143)
T ss_dssp HHHHHHHHHCTTCEEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHH
Confidence 77766543 6788763 3332 334566788999999999999999997766
No 84
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=46.01 E-value=1.4e+02 Score=26.33 Aligned_cols=75 Identities=11% Similarity=0.054 Sum_probs=49.0
Q ss_pred hHHHHHHHHc-cCcEEEeCC-CCCCCcHHHHHHHHc---CCcEEEc-Ccc---ccccccccCceEEEECCCCHHHHHHHH
Q 003962 630 NGELYRYICD-TKGAFVQPA-LYEAFGLTVVEAMTC---GLPTFAT-CKG---GPAEIIVNGKSGYHIDPYHGEQAAEIL 700 (783)
Q Consensus 630 ~~el~~~ia~-aadvfV~PS-~~E~fGltvlEAMa~---GlPVVat-~~G---G~~EiI~dg~~G~li~p~d~e~lAeaI 700 (783)
..+....+.. ..|++++-. ..+.-|+.+++.+.. .+|+|.. ... ...+.+..|..+++..|.+.+++.++|
T Consensus 55 ~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i 134 (150)
T 4e7p_A 55 GQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTL 134 (150)
T ss_dssp HHHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHH
T ss_pred HHHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHH
Confidence 4455555532 246666643 244567777776654 5777763 332 234456678899999999999999999
Q ss_pred HHHH
Q 003962 701 VDFF 704 (783)
Q Consensus 701 ~~~l 704 (783)
..++
T Consensus 135 ~~~~ 138 (150)
T 4e7p_A 135 HTVL 138 (150)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 85
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=45.97 E-value=78 Score=27.78 Aligned_cols=66 Identities=11% Similarity=0.100 Sum_probs=44.2
Q ss_pred cCcEEEeCCC-CCCCcHHHHHHHHc---CCcEEEc-Cccc---cccccccCceEEEECCCCHHHHHHHHHHHHH
Q 003962 640 TKGAFVQPAL-YEAFGLTVVEAMTC---GLPTFAT-CKGG---PAEIIVNGKSGYHIDPYHGEQAAEILVDFFE 705 (783)
Q Consensus 640 aadvfV~PS~-~E~fGltvlEAMa~---GlPVVat-~~GG---~~EiI~dg~~G~li~p~d~e~lAeaI~~~l~ 705 (783)
..|++++-.. .+.-|+.+++.+.. .+|+|.. .... ..+.+..|..+|+..|.+.+++..+|..+++
T Consensus 67 ~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~ 140 (146)
T 4dad_A 67 AFDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAA 140 (146)
T ss_dssp TCSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHh
Confidence 4677776433 23346666665543 6788763 3322 2345567889999999999999999977663
No 86
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A*
Probab=45.46 E-value=1.7e+02 Score=29.66 Aligned_cols=35 Identities=17% Similarity=0.403 Sum_probs=22.9
Q ss_pred cCCCceEEEE--c-CCC--------chHHHHHHHHhcCCcEEEEec
Q 003962 380 LQGKPDLIIG--N-YSD--------GNIVASLLAHKLGVTQCTIAH 414 (783)
Q Consensus 380 l~~~pDIIh~--h-~~~--------~~lva~llar~lgvp~v~t~H 414 (783)
+..+||+|++ | ... |...|++-+..+|+|-|..-.
T Consensus 83 ~~~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~ 128 (247)
T 1j9j_A 83 MDKRVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAMMNIPSIAISS 128 (247)
T ss_dssp STTCCSEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEE
T ss_pred ccCCCCEEEECCccCCCCCcCeecchhHHHHHHHHhcCCCeEEEec
Confidence 3568999994 1 111 235666667789999886654
No 87
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=45.38 E-value=23 Score=36.78 Aligned_cols=36 Identities=19% Similarity=0.421 Sum_probs=25.7
Q ss_pred cceEEEEcccccccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHCCCcee
Q 003962 254 VFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDIT 307 (783)
Q Consensus 254 ~~rI~iis~h~~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~GheV~ 307 (783)
.|||+||..| |+.++ ...+|.+...++++++||+|+
T Consensus 22 ~MKiLII~aH-----------P~~~S-------~n~aL~~~~~~~l~~~G~eV~ 57 (280)
T 4gi5_A 22 SMKVLLIYAH-----------PEPRS-------LNGALKNFAIRHLQQAGHEVQ 57 (280)
T ss_dssp CCEEEEEECC-----------SCTTS-------HHHHHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEEEeC-----------CCCcc-------HHHHHHHHHHHHHHHCCCeEE
Confidence 4899999755 23233 234556677888999999999
No 88
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=44.37 E-value=1.6e+02 Score=25.79 Aligned_cols=110 Identities=6% Similarity=0.047 Sum_probs=68.0
Q ss_pred CeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHc--------cCcEEEeCCC-
Q 003962 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICD--------TKGAFVQPAL- 649 (783)
Q Consensus 579 ~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~--------aadvfV~PS~- 649 (783)
..+++|+.+.+ .....+....+..+....|.... +..+....+.. ..|+++.=..
T Consensus 8 ~~~ILivdd~~----------~~~~~l~~~L~~~~~~~~v~~~~------~~~~al~~l~~~~~~~~~~~~dlillD~~l 71 (149)
T 1i3c_A 8 PKVILLVEDSK----------ADSRLVQEVLKTSTIDHELIILR------DGLAAMAFLQQQGEYENSPRPNLILLDLNL 71 (149)
T ss_dssp CEEEEEECCCH----------HHHHHHHHHHHSCCSCEEEEEEC------SHHHHHHHHTTCGGGTTCCCCSEEEECSCC
T ss_pred CCeEEEEECCH----------HHHHHHHHHHHhcCCCccEEEeC------CHHHHHHHHHhccccccCCCCCEEEEeCCC
Confidence 46778887763 23445555565544322333332 34566776652 3678777433
Q ss_pred CCCCcHHHHHHHHc-----CCcEEE-cCccc---cccccccCceEEEECCCCHHHHHHHHHHHH
Q 003962 650 YEAFGLTVVEAMTC-----GLPTFA-TCKGG---PAEIIVNGKSGYHIDPYHGEQAAEILVDFF 704 (783)
Q Consensus 650 ~E~fGltvlEAMa~-----GlPVVa-t~~GG---~~EiI~dg~~G~li~p~d~e~lAeaI~~~l 704 (783)
...-|+.+++.+.. .+|+|. |..+. ..+....|..||+..|.+.+++..+|..+.
T Consensus 72 p~~~g~~l~~~l~~~~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~ 135 (149)
T 1i3c_A 72 PKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIE 135 (149)
T ss_dssp SSSCHHHHHHHHHHCTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHhCcCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHH
Confidence 23457777777753 568776 33332 234456788999999999999999986654
No 89
>4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp}
Probab=44.24 E-value=1.6e+02 Score=27.31 Aligned_cols=36 Identities=14% Similarity=0.065 Sum_probs=23.1
Q ss_pred CCCcEEEEEecccCCCCHHHHHHHHHHhHccCCCeEEEEEeCC
Q 003962 546 RNKPILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGD 588 (783)
Q Consensus 546 ~~k~iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g 588 (783)
...|+++.-|.-|..=.+....+ .+++++++++=++
T Consensus 136 ~~~P~LiihG~~D~~Vp~~~s~~-------l~~~~~l~i~~g~ 171 (202)
T 4fle_A 136 SPDLLWLLQQTGDEVLDYRQAVA-------YYTPCRQTVESGG 171 (202)
T ss_dssp CGGGEEEEEETTCSSSCHHHHHH-------HTTTSEEEEESSC
T ss_pred cCceEEEEEeCCCCCCCHHHHHH-------HhhCCEEEEECCC
Confidence 45688899998887555443322 2457888888444
No 90
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=43.21 E-value=1.5e+02 Score=25.49 Aligned_cols=110 Identities=5% Similarity=-0.012 Sum_probs=67.1
Q ss_pred CeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHH------ccCcEEEeCCC-CC
Q 003962 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYIC------DTKGAFVQPAL-YE 651 (783)
Q Consensus 579 ~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia------~aadvfV~PS~-~E 651 (783)
..+++|+.+.+ .....+..+.+..+....|.... +..+....+. ...|++++-.. .+
T Consensus 9 ~~~iLivdd~~----------~~~~~l~~~l~~~~~~~~v~~~~------~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~ 72 (146)
T 3ilh_A 9 IDSVLLIDDDD----------IVNFLNTTIIRMTHRVEEIQSVT------SGNAAINKLNELYAAGRWPSIICIDINMPG 72 (146)
T ss_dssp EEEEEEECSCH----------HHHHHHHHHHHTTCCEEEEEEES------SHHHHHHHHHHHHTSSCCCSEEEEESSCSS
T ss_pred cceEEEEeCCH----------HHHHHHHHHHHhcCCCeeeeecC------CHHHHHHHHHHhhccCCCCCEEEEcCCCCC
Confidence 45778887763 23345555565544321343332 3456666665 23677776433 45
Q ss_pred CCcHHHHHHHHc-------CCcEEEc-Cccc---cccccccC-ceEEEECCCCHHHHHHHHHHHH
Q 003962 652 AFGLTVVEAMTC-------GLPTFAT-CKGG---PAEIIVNG-KSGYHIDPYHGEQAAEILVDFF 704 (783)
Q Consensus 652 ~fGltvlEAMa~-------GlPVVat-~~GG---~~EiI~dg-~~G~li~p~d~e~lAeaI~~~l 704 (783)
.-|+.+++.+.. .+|+|.. .... ..+....| ..+++..|-+.+++.++|....
T Consensus 73 ~~g~~~~~~l~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~ 137 (146)
T 3ilh_A 73 INGWELIDLFKQHFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVL 137 (146)
T ss_dssp SCHHHHHHHHHHHCGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHH
Confidence 567788777654 6677664 3322 23344566 8899999999999999996654
No 91
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=43.06 E-value=1.7e+02 Score=25.69 Aligned_cols=112 Identities=10% Similarity=0.027 Sum_probs=66.8
Q ss_pred CCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHH-ccCcEEEeCC-CCCCCcH
Q 003962 578 ELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYIC-DTKGAFVQPA-LYEAFGL 655 (783)
Q Consensus 578 ~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia-~aadvfV~PS-~~E~fGl 655 (783)
+..+++|+.+.+ ...+.+....++.+....|... .+..+....+. ...|+++.-. ..+.-|+
T Consensus 14 ~~~~iLivdd~~----------~~~~~l~~~L~~~~~~~~v~~~------~~~~~a~~~l~~~~~dlii~d~~l~~~~g~ 77 (152)
T 3eul_A 14 EKVRVVVGDDHP----------LFREGVVRALSLSGSVNVVGEA------DDGAAALELIKAHLPDVALLDYRMPGMDGA 77 (152)
T ss_dssp CCEEEEEECSSH----------HHHHHHHHHHHHHSSEEEEEEE------SSHHHHHHHHHHHCCSEEEEETTCSSSCHH
T ss_pred ceEEEEEEcCCH----------HHHHHHHHHHhhCCCeEEEEEe------CCHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 356777777763 2344555666655421112122 12345555443 2356666643 3445677
Q ss_pred HHHHHHHc---CCcEEEc-Cccc---cccccccCceEEEECCCCHHHHHHHHHHHHH
Q 003962 656 TVVEAMTC---GLPTFAT-CKGG---PAEIIVNGKSGYHIDPYHGEQAAEILVDFFE 705 (783)
Q Consensus 656 tvlEAMa~---GlPVVat-~~GG---~~EiI~dg~~G~li~p~d~e~lAeaI~~~l~ 705 (783)
.+++.+.. .+|||.. .... ..+.+..|..|++..|.+.+++.++|..++.
T Consensus 78 ~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 134 (152)
T 3eul_A 78 QVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAK 134 (152)
T ss_dssp HHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHc
Confidence 77776653 5677763 3332 2345567889999999999999999977663
No 92
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=41.85 E-value=1.6e+02 Score=25.02 Aligned_cols=108 Identities=16% Similarity=0.260 Sum_probs=68.8
Q ss_pred eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHc--cCcEEEeCC-CCCCCcHH
Q 003962 580 VNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICD--TKGAFVQPA-LYEAFGLT 656 (783)
Q Consensus 580 ~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~--aadvfV~PS-~~E~fGlt 656 (783)
.+++|+.+.+ ...+.+....++.+.. .|.... +..+....+.. ..|+++.-. .-+.-|+.
T Consensus 6 ~~iLivdd~~----------~~~~~l~~~L~~~g~~-~v~~~~------~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~ 68 (129)
T 3h1g_A 6 MKLLVVDDSS----------TMRRIIKNTLSRLGYE-DVLEAE------HGVEAWEKLDANADTKVLITDWNMPEMNGLD 68 (129)
T ss_dssp CCEEEECSCH----------HHHHHHHHHHHHTTCC-CEEEES------SHHHHHHHHHHCTTCCEEEECSCCSSSCHHH
T ss_pred cEEEEEeCCH----------HHHHHHHHHHHHcCCc-EEEEeC------CHHHHHHHHHhCCCCCEEEEeCCCCCCCHHH
Confidence 4677777663 3345666777776642 243332 23455554432 257777633 33556888
Q ss_pred HHHHHHc-----CCcEEE-cCcccc---ccccccCceEEEECCCCHHHHHHHHHHHH
Q 003962 657 VVEAMTC-----GLPTFA-TCKGGP---AEIIVNGKSGYHIDPYHGEQAAEILVDFF 704 (783)
Q Consensus 657 vlEAMa~-----GlPVVa-t~~GG~---~EiI~dg~~G~li~p~d~e~lAeaI~~~l 704 (783)
+++.+.. .+|+|. |..+.. .+.+..|..+|+..|.+++++.++|..++
T Consensus 69 ~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l 125 (129)
T 3h1g_A 69 LVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVL 125 (129)
T ss_dssp HHHHHHTSTTCTTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHh
Confidence 8888764 578877 343332 34456788999999999999999997655
No 93
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=41.46 E-value=1.5e+02 Score=26.39 Aligned_cols=108 Identities=9% Similarity=0.134 Sum_probs=62.4
Q ss_pred eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHc---cCcEEEeCCC-CCCCcH
Q 003962 580 VNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICD---TKGAFVQPAL-YEAFGL 655 (783)
Q Consensus 580 ~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~---aadvfV~PS~-~E~fGl 655 (783)
.+++|+.+.+ ...+.+....++.+. .+... ..+..+....+.. ..|++++-.. .+.-|+
T Consensus 37 ~~Ilivdd~~----------~~~~~l~~~L~~~g~--~v~~~-----~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~ 99 (157)
T 3hzh_A 37 FNVLIVDDSV----------FTVKQLTQIFTSEGF--NIIDT-----AADGEEAVIKYKNHYPNIDIVTLXITMPKMDGI 99 (157)
T ss_dssp CEEEEECSCH----------HHHHHHHHHHHHTTC--EEEEE-----ESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHH
T ss_pred eEEEEEeCCH----------HHHHHHHHHHHhCCC--eEEEE-----ECCHHHHHHHHHhcCCCCCEEEEeccCCCccHH
Confidence 4566666653 233455555555542 23211 1234455555543 2366666433 344566
Q ss_pred HHHHHHH---cCCcEEEc-Ccc---ccccccccCceEEEECCCCHHHHHHHHHHHH
Q 003962 656 TVVEAMT---CGLPTFAT-CKG---GPAEIIVNGKSGYHIDPYHGEQAAEILVDFF 704 (783)
Q Consensus 656 tvlEAMa---~GlPVVat-~~G---G~~EiI~dg~~G~li~p~d~e~lAeaI~~~l 704 (783)
.+++.+. ..+|||.. ... ...+.+..|..+++..|.+.+++.++|..++
T Consensus 100 ~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l 155 (157)
T 3hzh_A 100 TCLSNIMEFDKNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVF 155 (157)
T ss_dssp HHHHHHHHHCTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTT
T ss_pred HHHHHHHhhCCCCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHh
Confidence 6666554 36788774 322 2234556788999999999999999986543
No 94
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=38.01 E-value=1.9e+02 Score=24.69 Aligned_cols=108 Identities=12% Similarity=0.142 Sum_probs=67.5
Q ss_pred CeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEE-ccCCCCcCChHHHHHHHHc-cCcEEEeCCCC--CCCc
Q 003962 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRW-ISSQMNRVRNGELYRYICD-TKGAFVQPALY--EAFG 654 (783)
Q Consensus 579 ~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~f-lG~~~~~~~~~el~~~ia~-aadvfV~PS~~--E~fG 654 (783)
..+++|+.+.+ .....+....+..+. .+.. .. +..+....+.. ..|+++.-... +.-|
T Consensus 9 ~~~iLivdd~~----------~~~~~l~~~L~~~g~--~v~~~~~------~~~~a~~~~~~~~~dlii~d~~~~~~~~g 70 (140)
T 3cg0_A 9 LPGVLIVEDGR----------LAAATLRIQLESLGY--DVLGVFD------NGEEAVRCAPDLRPDIALVDIMLCGALDG 70 (140)
T ss_dssp CCEEEEECCBH----------HHHHHHHHHHHHHTC--EEEEEES------SHHHHHHHHHHHCCSEEEEESSCCSSSCH
T ss_pred CceEEEEECCH----------HHHHHHHHHHHHCCC--eeEEEEC------CHHHHHHHHHhCCCCEEEEecCCCCCCCH
Confidence 46788888764 234556666666553 3442 22 23455555432 36777764433 3456
Q ss_pred HHHHHHHH--cCCcEEEc-Ccccc---ccccccCceEEEECCCCHHHHHHHHHHHH
Q 003962 655 LTVVEAMT--CGLPTFAT-CKGGP---AEIIVNGKSGYHIDPYHGEQAAEILVDFF 704 (783)
Q Consensus 655 ltvlEAMa--~GlPVVat-~~GG~---~EiI~dg~~G~li~p~d~e~lAeaI~~~l 704 (783)
+.+++.+. ..+|+|.- ..... .+.+..|..+++..|.+.+++..+|..++
T Consensus 71 ~~~~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 126 (140)
T 3cg0_A 71 VETAARLAAGCNLPIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAI 126 (140)
T ss_dssp HHHHHHHHHHSCCCEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 66666554 57898874 33322 34456788999999999999999997665
No 95
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=37.29 E-value=19 Score=37.04 Aligned_cols=35 Identities=23% Similarity=0.378 Sum_probs=25.7
Q ss_pred CcceEEEEcccccccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHCCCceeeceeEEeCC
Q 003962 253 MVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRL 316 (783)
Q Consensus 253 m~~rI~iis~h~~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~GheV~~~i~VvT~~ 316 (783)
|.|||+|....|+.| . .+++.|.++|++|. ++++.
T Consensus 1 M~~~vlVtGatG~iG--------------~-----------~l~~~L~~~g~~V~----~~~r~ 35 (311)
T 3m2p_A 1 MSLKIAVTGGTGFLG--------------Q-----------YVVESIKNDGNTPI----ILTRS 35 (311)
T ss_dssp -CCEEEEETTTSHHH--------------H-----------HHHHHHHHTTCEEE----EEESC
T ss_pred CCCEEEEECCCcHHH--------------H-----------HHHHHHHhCCCEEE----EEeCC
Confidence 678898887666532 2 56677889999998 88886
No 96
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=37.14 E-value=2e+02 Score=24.70 Aligned_cols=106 Identities=7% Similarity=0.044 Sum_probs=60.3
Q ss_pred eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHH-ccCcEEEeCCC-CCCCcHHH
Q 003962 580 VNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYIC-DTKGAFVQPAL-YEAFGLTV 657 (783)
Q Consensus 580 ~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia-~aadvfV~PS~-~E~fGltv 657 (783)
.+++|+.+.+ .....+....+.. -.|.... +..+....+. ...|+++.-.. .+.-|+.+
T Consensus 4 ~~iLivdd~~----------~~~~~l~~~l~~~---~~v~~~~------~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~ 64 (140)
T 3n53_A 4 KKILIIDQQD----------FSRIELKNFLDSE---YLVIESK------NEKEALEQIDHHHPDLVILDMDIIGENSPNL 64 (140)
T ss_dssp CEEEEECSCH----------HHHHHHHHHHTTT---SEEEEES------SHHHHHHHHHHHCCSEEEEETTC------CH
T ss_pred CEEEEEeCCH----------HHHHHHHHHHHhc---ceEEEeC------CHHHHHHHHhcCCCCEEEEeCCCCCCcHHHH
Confidence 4667777653 2234444444433 2344332 3455555553 23577776432 34456667
Q ss_pred HHHHH-----cCCcEEEc-Ccc---ccccccccCceEEEECCCCHHHHHHHHHHHH
Q 003962 658 VEAMT-----CGLPTFAT-CKG---GPAEIIVNGKSGYHIDPYHGEQAAEILVDFF 704 (783)
Q Consensus 658 lEAMa-----~GlPVVat-~~G---G~~EiI~dg~~G~li~p~d~e~lAeaI~~~l 704 (783)
++.+. .++|+|.. ... ...+.+..|..+++..|.+.+++..+|..++
T Consensus 65 ~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 120 (140)
T 3n53_A 65 CLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHL 120 (140)
T ss_dssp HHHHHTSTTCTTCCEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHcCcccCCCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHH
Confidence 77665 56788763 322 2344566788999999999999999997766
No 97
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=36.44 E-value=2e+02 Score=24.60 Aligned_cols=109 Identities=12% Similarity=0.138 Sum_probs=69.9
Q ss_pred CeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHc-cCcEEEeCCC-CCCCcHH
Q 003962 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICD-TKGAFVQPAL-YEAFGLT 656 (783)
Q Consensus 579 ~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~-aadvfV~PS~-~E~fGlt 656 (783)
..+++|+.+.+ ...+.+....+..+. +|.... +..+....+.. ..|+++.-.. .+.-|+.
T Consensus 7 ~~~iLivdd~~----------~~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlii~d~~l~~~~g~~ 68 (142)
T 3cg4_A 7 KGDVMIVDDDA----------HVRIAVKTILSDAGF--HIISAD------SGGQCIDLLKKGFSGVVLLDIMMPGMDGWD 68 (142)
T ss_dssp CCEEEEECSCH----------HHHHHHHHHHHHTTC--EEEEES------SHHHHHHHHHTCCCEEEEEESCCSSSCHHH
T ss_pred CCeEEEEcCCH----------HHHHHHHHHHHHCCe--EEEEeC------CHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 46788887763 334566666666653 344332 34566666653 2466666432 3456778
Q ss_pred HHHHHHc-----CCcEEEc-Ccc---ccccccccCceEEEECCCCHHHHHHHHHHHHH
Q 003962 657 VVEAMTC-----GLPTFAT-CKG---GPAEIIVNGKSGYHIDPYHGEQAAEILVDFFE 705 (783)
Q Consensus 657 vlEAMa~-----GlPVVat-~~G---G~~EiI~dg~~G~li~p~d~e~lAeaI~~~l~ 705 (783)
+++.+.. .+|+|.. ... ...+.+..|..+++..|.+.+++.++|..++.
T Consensus 69 ~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 69 TIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMG 126 (142)
T ss_dssp HHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHH
Confidence 8887764 4677763 332 23445567889999999999999999977663
No 98
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=36.28 E-value=33 Score=33.08 Aligned_cols=37 Identities=16% Similarity=0.347 Sum_probs=23.5
Q ss_pred CcceEEEEcccccccccCCCCCCCCCcchhhHHHHHHHHHHHHHHH-HHHCCCcee
Q 003962 253 MVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLR-IKQQGLDIT 307 (783)
Q Consensus 253 m~~rI~iis~h~~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~-L~~~GheV~ 307 (783)
|+|||++|+ | .|..+|... .+++.+++. +.++|++|+
T Consensus 1 mMmkilii~--g---------S~r~~g~t~-------~la~~i~~~~l~~~g~~v~ 38 (197)
T 2vzf_A 1 MTYSIVAIS--G---------SPSRNSTTA-------KLAEYALAHVLARSDSQGR 38 (197)
T ss_dssp CCEEEEEEE--C---------CSSTTCHHH-------HHHHHHHHHHHHHSSEEEE
T ss_pred CCceEEEEE--C---------CCCCCChHH-------HHHHHHHHHHHHHCCCeEE
Confidence 578999986 2 233345433 233466777 788899888
No 99
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=35.38 E-value=1.2e+02 Score=24.86 Aligned_cols=104 Identities=6% Similarity=0.054 Sum_probs=63.6
Q ss_pred EEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHc-cCcEEEeCCC-CCCCcHHHH
Q 003962 581 NLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICD-TKGAFVQPAL-YEAFGLTVV 658 (783)
Q Consensus 581 ~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~-aadvfV~PS~-~E~fGltvl 658 (783)
+++++.+.+ .....+....+..+. +|.... +..+....+.. ..|+.+.-.. .+.-|..++
T Consensus 3 ~iliv~~~~----------~~~~~l~~~l~~~g~--~v~~~~------~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~ 64 (119)
T 2j48_A 3 HILLLEEED----------EAATVVCEMLTAAGF--KVIWLV------DGSTALDQLDLLQPIVILMAWPPPDQSCLLLL 64 (119)
T ss_dssp EEEEECCCH----------HHHHHHHHHHHHTTC--EEEEES------CHHHHHHHHHHHCCSEEEEECSTTCCTHHHHH
T ss_pred EEEEEeCCH----------HHHHHHHHHHHhCCc--EEEEec------CHHHHHHHHHhcCCCEEEEecCCCCCCHHHHH
Confidence 566776653 234556666666554 454432 23455554432 3577666433 344677788
Q ss_pred HHHH-----cCCcEEE-cCccccccccccCceEEEECCCCHHHHHHHHHH
Q 003962 659 EAMT-----CGLPTFA-TCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVD 702 (783)
Q Consensus 659 EAMa-----~GlPVVa-t~~GG~~EiI~dg~~G~li~p~d~e~lAeaI~~ 702 (783)
+.+. ..+|+|. |......+....|..+++..|.+.+++..+|..
T Consensus 65 ~~l~~~~~~~~~~ii~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~ 114 (119)
T 2j48_A 65 QHLREHQADPHPPLVLFLGEPPVDPLLTAQASAILSKPLDPQLLLTTLQG 114 (119)
T ss_dssp HHHHHTCCCSSCCCEEEESSCCSSHHHHHHCSEECSSCSTTHHHHHHHHT
T ss_pred HHHHhccccCCCCEEEEeCCCCchhhhhcCHHHhccCCCCHHHHHHHHHH
Confidence 8775 4678776 333322256667888999999999999888854
No 100
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=35.27 E-value=44 Score=34.26 Aligned_cols=37 Identities=14% Similarity=0.270 Sum_probs=24.8
Q ss_pred CcceEEEEcccccccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHCCCcee
Q 003962 253 MVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDIT 307 (783)
Q Consensus 253 m~~rI~iis~h~~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~GheV~ 307 (783)
|+|||++|.-|- ..+|. .++|++.+++.+.+.|++|+
T Consensus 1 ~MmkiLiI~gSp-----------r~~s~-------t~~la~~~~~~l~~~g~eV~ 37 (273)
T 1d4a_A 1 VGRRALIVLAHS-----------ERTSF-------NYAMKEAAAAALKKKGWEVV 37 (273)
T ss_dssp CCCEEEEEECCS-----------CTTSH-------HHHHHHHHHHHHHHTTCEEE
T ss_pred CCCEEEEEEeCC-----------CCccH-------HHHHHHHHHHHHHhCCCeEE
Confidence 457999997442 22332 34455567778888999998
No 101
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=35.26 E-value=1.7e+02 Score=26.33 Aligned_cols=109 Identities=15% Similarity=0.186 Sum_probs=68.0
Q ss_pred CeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHH-ccCcEEEeCCC-CCCCcHH
Q 003962 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYIC-DTKGAFVQPAL-YEAFGLT 656 (783)
Q Consensus 579 ~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia-~aadvfV~PS~-~E~fGlt 656 (783)
+.+++||-+.+ ...+-+....+..|.. .|.... +-.+....+. ..-|+.+.=-. -+--|+.
T Consensus 12 ~~rILiVDD~~----------~~r~~l~~~L~~~G~~-~v~~a~------~g~~al~~~~~~~~DlillD~~MP~mdG~e 74 (134)
T 3to5_A 12 NMKILIVDDFS----------TMRRIVKNLLRDLGFN-NTQEAD------DGLTALPMLKKGDFDFVVTDWNMPGMQGID 74 (134)
T ss_dssp TCCEEEECSCH----------HHHHHHHHHHHHTTCC-CEEEES------SHHHHHHHHHHHCCSEEEEESCCSSSCHHH
T ss_pred CCEEEEEeCCH----------HHHHHHHHHHHHcCCc-EEEEEC------CHHHHHHHHHhCCCCEEEEcCCCCCCCHHH
Confidence 46777877653 2345566666776652 243322 2234444333 23577766322 2446888
Q ss_pred HHHHHH-----cCCcEEE-cCccccc---cccccCceEEEECCCCHHHHHHHHHHHH
Q 003962 657 VVEAMT-----CGLPTFA-TCKGGPA---EIIVNGKSGYHIDPYHGEQAAEILVDFF 704 (783)
Q Consensus 657 vlEAMa-----~GlPVVa-t~~GG~~---EiI~dg~~G~li~p~d~e~lAeaI~~~l 704 (783)
+++.+- ..+|||. |..+... +..+.|.++|+..|-+++++.++|.+++
T Consensus 75 l~~~ir~~~~~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l 131 (134)
T 3to5_A 75 LLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIF 131 (134)
T ss_dssp HHHHHHHSTTTTTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 888774 4688886 5444433 3345788999999999999999997665
No 102
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=34.90 E-value=2.1e+02 Score=24.45 Aligned_cols=107 Identities=13% Similarity=0.167 Sum_probs=65.3
Q ss_pred eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHc-cCcEEEeCCC-C-----CC
Q 003962 580 VNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICD-TKGAFVQPAL-Y-----EA 652 (783)
Q Consensus 580 ~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~-aadvfV~PS~-~-----E~ 652 (783)
.+++|+.+.+ .....+....+..+. .|.... +..+....+.. ..|++++-.. . +.
T Consensus 4 ~~ilivdd~~----------~~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~ 65 (140)
T 2qr3_A 4 GTIIIVDDNK----------GVLTAVQLLLKNHFS--KVITLS------SPVSLSTVLREENPEVVLLDMNFTSGINNGN 65 (140)
T ss_dssp CEEEEECSCH----------HHHHHHHHHHTTTSS--EEEEEC------CHHHHHHHHHHSCEEEEEEETTTTC-----C
T ss_pred ceEEEEeCCH----------HHHHHHHHHHHhCCc--EEEEeC------CHHHHHHHHHcCCCCEEEEeCCcCCCCCCCc
Confidence 5677777663 234455555555443 344332 34556665543 2466666433 2 44
Q ss_pred CcHHHHHHHH---cCCcEEEc-Cccc---cccccccCceEEEECCCCHHHHHHHHHHHH
Q 003962 653 FGLTVVEAMT---CGLPTFAT-CKGG---PAEIIVNGKSGYHIDPYHGEQAAEILVDFF 704 (783)
Q Consensus 653 fGltvlEAMa---~GlPVVat-~~GG---~~EiI~dg~~G~li~p~d~e~lAeaI~~~l 704 (783)
-|+.+++.+. ..+|+|.. .... ..+.+..|..+++..|.+.+++.++|..++
T Consensus 66 ~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 124 (140)
T 2qr3_A 66 EGLFWLHEIKRQYRDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAA 124 (140)
T ss_dssp CHHHHHHHHHHHCTTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhCcCCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHH
Confidence 5677766664 47888874 3322 234456788999999999999999997665
No 103
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=34.83 E-value=2.1e+02 Score=24.32 Aligned_cols=108 Identities=10% Similarity=0.155 Sum_probs=68.9
Q ss_pred CeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHcc--CcEEEeCC-CCCCCcH
Q 003962 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDT--KGAFVQPA-LYEAFGL 655 (783)
Q Consensus 579 ~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~a--advfV~PS-~~E~fGl 655 (783)
..+++|+.+.+ .....+....++.+. .|.... +..+....+... .|+++.-. ..+.-|+
T Consensus 7 ~~~ilivdd~~----------~~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~ 68 (136)
T 3hdv_A 7 RPLVLVVDDNA----------VNREALILYLKSRGI--DAVGAD------GAEEARLYLHYQKRIGLMITDLRMQPESGL 68 (136)
T ss_dssp CCEEEEECSCH----------HHHHHHHHHHHHTTC--CEEEES------SHHHHHHHHHHCTTEEEEEECSCCSSSCHH
T ss_pred CCeEEEECCCH----------HHHHHHHHHHHHcCc--eEEEeC------CHHHHHHHHHhCCCCcEEEEeccCCCCCHH
Confidence 35788888764 234566667776654 444432 344555555432 46666643 3455688
Q ss_pred HHHHHHHc----CCcEEEc-Cccc---cccccccCceEEEECCCCHHHHHHHHHHHH
Q 003962 656 TVVEAMTC----GLPTFAT-CKGG---PAEIIVNGKSGYHIDPYHGEQAAEILVDFF 704 (783)
Q Consensus 656 tvlEAMa~----GlPVVat-~~GG---~~EiI~dg~~G~li~p~d~e~lAeaI~~~l 704 (783)
.+++.+.. .+|+|.. .... ..+.+..|..+++..|.+.+++..+|.+..
T Consensus 69 ~~~~~l~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 125 (136)
T 3hdv_A 69 DLIRTIRASERAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKEL 125 (136)
T ss_dssp HHHHHHHTSTTTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHh
Confidence 88887754 4677764 3322 234456788999999999999999996654
No 104
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=34.39 E-value=2e+02 Score=25.24 Aligned_cols=109 Identities=6% Similarity=-0.012 Sum_probs=65.5
Q ss_pred CeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHc-CCCCcEEEccCCCCcCChHHHHHHHHc--cCcEEEeCCC-CCCCc
Q 003962 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQY-KLNGQFRWISSQMNRVRNGELYRYICD--TKGAFVQPAL-YEAFG 654 (783)
Q Consensus 579 ~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~-~L~~~V~flG~~~~~~~~~el~~~ia~--aadvfV~PS~-~E~fG 654 (783)
..+++|+.+.+ .....+....+.. +. ..|.... +..+....+.. ..|+++.-.. .+.-|
T Consensus 3 ~~~iLivdd~~----------~~~~~l~~~L~~~~g~-~~v~~~~------~~~~a~~~l~~~~~~dlvi~d~~l~~~~g 65 (154)
T 2qsj_A 3 LTVVLIVDDHH----------LIRAGAKNLLEGAFSG-MRVEGAE------TVSDALAFLEADNTVDLILLDVNLPDAEA 65 (154)
T ss_dssp CEEEEEECSCH----------HHHHHHHHHHHHHCTT-EEEEEES------SHHHHHHHHHTTCCCSEEEECC------C
T ss_pred ccEEEEEcCCH----------HHHHHHHHHHHhCCCc-eEEEEec------CHHHHHHHHhccCCCCEEEEeCCCCCCch
Confidence 35778887763 3345566666665 32 1233332 34566666653 3677777443 23357
Q ss_pred HHHHHHHH---cCCcEEEc-Cccc---cccccccCceEEEECCCCHHHHHHHHHHHH
Q 003962 655 LTVVEAMT---CGLPTFAT-CKGG---PAEIIVNGKSGYHIDPYHGEQAAEILVDFF 704 (783)
Q Consensus 655 ltvlEAMa---~GlPVVat-~~GG---~~EiI~dg~~G~li~p~d~e~lAeaI~~~l 704 (783)
+.+++.+. .++|+|.. .... ..+.+..|..|++..|.+.+++.++|..++
T Consensus 66 ~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~ 122 (154)
T 2qsj_A 66 IDGLVRLKRFDPSNAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLIL 122 (154)
T ss_dssp HHHHHHHHHHCTTSEEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHH
Confidence 77777665 36888874 3222 234456788999999999999999997766
No 105
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=33.60 E-value=2.3e+02 Score=24.36 Aligned_cols=109 Identities=12% Similarity=0.182 Sum_probs=66.5
Q ss_pred CeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHc-cCcEEEeCCC-CCCCcHH
Q 003962 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICD-TKGAFVQPAL-YEAFGLT 656 (783)
Q Consensus 579 ~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~-aadvfV~PS~-~E~fGlt 656 (783)
..+++|+.+.+ .....+....+..+. .|.... +..+....+.. ..|+++.-.. ...-|+.
T Consensus 4 ~~~Ilivdd~~----------~~~~~l~~~L~~~g~--~v~~~~------~~~~al~~~~~~~~dlvllD~~l~~~~g~~ 65 (136)
T 2qzj_A 4 QTKILIIDGDK----------DNCQKLKGFLEEKGI--SIDLAY------NCEEAIGKIFSNKYDLIFLEIILSDGDGWT 65 (136)
T ss_dssp CCEEEEECSCH----------HHHHHHHHHHHTTTC--EEEEES------SHHHHHHHHHHCCCSEEEEESEETTEEHHH
T ss_pred CCeEEEEcCCH----------HHHHHHHHHHHHCCC--EEEEEC------CHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 35677887763 234555666655443 344332 33455555542 3577776332 2335777
Q ss_pred HHHHHHc--CCcEEEc-Cccc---cccccccCceEEEECCCCHHHHHHHHHHHHH
Q 003962 657 VVEAMTC--GLPTFAT-CKGG---PAEIIVNGKSGYHIDPYHGEQAAEILVDFFE 705 (783)
Q Consensus 657 vlEAMa~--GlPVVat-~~GG---~~EiI~dg~~G~li~p~d~e~lAeaI~~~l~ 705 (783)
+++.+.. .+|+|.. .... ..+.+..|..+++..|.+.+++..+|..++.
T Consensus 66 l~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 120 (136)
T 2qzj_A 66 LCKKIRNVTTCPIVYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILR 120 (136)
T ss_dssp HHHHHHTTCCCCEEEEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHccCCCCCEEEEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 7777653 5787763 3332 2344567889999999999999999976653
No 106
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A
Probab=32.36 E-value=1.8e+02 Score=29.31 Aligned_cols=35 Identities=26% Similarity=0.442 Sum_probs=23.1
Q ss_pred cCCCceEEEE--cC-C--------CchHHHHHHHHhcCCcEEEEec
Q 003962 380 LQGKPDLIIG--NY-S--------DGNIVASLLAHKLGVTQCTIAH 414 (783)
Q Consensus 380 l~~~pDIIh~--h~-~--------~~~lva~llar~lgvp~v~t~H 414 (783)
+..+||+|++ |. . -|...|++-+..+|+|-|..-.
T Consensus 84 l~~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~ 129 (244)
T 2e6c_A 84 LFGPVDLVLSGVNLGSNLGHEIWHSGTVAAAKQGYLFGLSAAAFSV 129 (244)
T ss_dssp HSCSCCEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCCEEEECCccCCCCCcCeechHhHHHHHHHHhcCCCeEEEec
Confidence 3668999994 11 1 1235666667789999886654
No 107
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=32.00 E-value=1.4e+02 Score=25.67 Aligned_cols=107 Identities=14% Similarity=0.187 Sum_probs=67.8
Q ss_pred eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHH-cCCCCcEEEccCCCCcCChHHHHHHHHc--cCcEEEeCCCCC--CCc
Q 003962 580 VNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQ-YKLNGQFRWISSQMNRVRNGELYRYICD--TKGAFVQPALYE--AFG 654 (783)
Q Consensus 580 ~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~-~~L~~~V~flG~~~~~~~~~el~~~ia~--aadvfV~PS~~E--~fG 654 (783)
.+++|+.+.+ .....+....+. .+. .|.... +..+....+.. ..|+++.-.... .-|
T Consensus 5 ~~ilivdd~~----------~~~~~l~~~L~~~~~~--~v~~~~------~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g 66 (140)
T 3lua_A 5 GTVLLIDYFE----------YEREKTKIIFDNIGEY--DFIEVE------NLKKFYSIFKDLDSITLIIMDIAFPVEKEG 66 (140)
T ss_dssp CEEEEECSCH----------HHHHHHHHHHHHHCCC--EEEEEC------SHHHHHTTTTTCCCCSEEEECSCSSSHHHH
T ss_pred CeEEEEeCCH----------HHHHHHHHHHHhccCc--cEEEEC------CHHHHHHHHhcCCCCcEEEEeCCCCCCCcH
Confidence 4677777663 234556666666 443 444332 34555555542 467777754432 356
Q ss_pred HHHHHHHHc-----CCcEEEc-Cccc---cccccccCceEEEECCCCHHHHHHHHHHHH
Q 003962 655 LTVVEAMTC-----GLPTFAT-CKGG---PAEIIVNGKSGYHIDPYHGEQAAEILVDFF 704 (783)
Q Consensus 655 ltvlEAMa~-----GlPVVat-~~GG---~~EiI~dg~~G~li~p~d~e~lAeaI~~~l 704 (783)
+.+++.+.. .+|+|.. .... ..+.+..|..+++..|.+.+++.++|..++
T Consensus 67 ~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 125 (140)
T 3lua_A 67 LEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVL 125 (140)
T ss_dssp HHHHHHHHHSGGGTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHH
T ss_pred HHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHH
Confidence 777776654 7888874 3322 234456788999999999999999997765
No 108
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=31.53 E-value=28 Score=33.43 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=15.3
Q ss_pred HHHHHHHHCCCceeeceeEEeCC
Q 003962 294 EMLLRIKQQGLDITPQILIITRL 316 (783)
Q Consensus 294 eLa~~L~~~GheV~~~i~VvT~~ 316 (783)
.+++.|.++|++|. +++|.
T Consensus 15 ~l~~~L~~~g~~V~----~~~R~ 33 (221)
T 3ew7_A 15 RILEEAKNRGHEVT----AIVRN 33 (221)
T ss_dssp HHHHHHHHTTCEEE----EEESC
T ss_pred HHHHHHHhCCCEEE----EEEcC
Confidence 45577889999998 88875
No 109
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=30.98 E-value=1.2e+02 Score=29.36 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=19.2
Q ss_pred CCceEEEEcCCCc--hHHHHHHHHh-cCCcEEE
Q 003962 382 GKPDLIIGNYSDG--NIVASLLAHK-LGVTQCT 411 (783)
Q Consensus 382 ~~pDIIh~h~~~~--~lva~llar~-lgvp~v~ 411 (783)
.+.|+|++-..+. +..+...++. .+.+.++
T Consensus 64 ~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~ii 96 (218)
T 3l4b_C 64 SKNDVVVILTPRDEVNLFIAQLVMKDFGVKRVV 96 (218)
T ss_dssp CTTCEEEECCSCHHHHHHHHHHHHHTSCCCEEE
T ss_pred ccCCEEEEecCCcHHHHHHHHHHHHHcCCCeEE
Confidence 4689888765543 6666666665 5665543
No 110
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=30.65 E-value=2.5e+02 Score=23.89 Aligned_cols=109 Identities=7% Similarity=0.116 Sum_probs=68.6
Q ss_pred CeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHH-cCCCCc-EEEccCCCCcCChHHHHHHHHc-cCcEEEeCCC-CCCCc
Q 003962 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQ-YKLNGQ-FRWISSQMNRVRNGELYRYICD-TKGAFVQPAL-YEAFG 654 (783)
Q Consensus 579 ~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~-~~L~~~-V~flG~~~~~~~~~el~~~ia~-aadvfV~PS~-~E~fG 654 (783)
..+++|+.+.+ .....+....+. .+. . |.... +..+....+.. ..|+++.-.. .+.-|
T Consensus 8 ~~~iLivdd~~----------~~~~~l~~~L~~~~~~--~~v~~~~------~~~~a~~~l~~~~~dlii~d~~l~~~~g 69 (143)
T 3cnb_A 8 DFSILIIEDDK----------EFADMLTQFLENLFPY--AKIKIAY------NPFDAGDLLHTVKPDVVMLDLMMVGMDG 69 (143)
T ss_dssp -CEEEEECSCH----------HHHHHHHHHHHHHCTT--CEEEEEC------SHHHHHHHHHHTCCSEEEEETTCTTSCH
T ss_pred CceEEEEECCH----------HHHHHHHHHHHhccCc--cEEEEEC------CHHHHHHHHHhcCCCEEEEecccCCCcH
Confidence 45778887764 234556666666 453 3 44443 23455555542 3577776433 34467
Q ss_pred HHHHHHHHc-----CCcEEE-cCcccc---ccccccCceEEEECCCCHHHHHHHHHHHHH
Q 003962 655 LTVVEAMTC-----GLPTFA-TCKGGP---AEIIVNGKSGYHIDPYHGEQAAEILVDFFE 705 (783)
Q Consensus 655 ltvlEAMa~-----GlPVVa-t~~GG~---~EiI~dg~~G~li~p~d~e~lAeaI~~~l~ 705 (783)
+.+++.+.. .+|+|. |..... .+.+..|..+++..|.+.+++..+|..+++
T Consensus 70 ~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 129 (143)
T 3cnb_A 70 FSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVE 129 (143)
T ss_dssp HHHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 778887765 578776 333322 344567889999999999999999977663
No 111
>1jwq_A N-acetylmuramoyl-L-alanine amidase CWLV; open alpha-beta-alpha, hydrolase; 1.80A {Paenibacillus polymyxa} SCOP: c.56.5.6
Probab=30.01 E-value=49 Score=31.77 Aligned_cols=28 Identities=21% Similarity=0.132 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHC-CCceeeceeEEeCC
Q 003962 284 ILDQVRALEDEMLLRIKQQ-GLDITPQILIITRL 316 (783)
Q Consensus 284 v~d~araL~~eLa~~L~~~-GheV~~~i~VvT~~ 316 (783)
=.|.+.+++..|.+.|.+. |++|. +||.
T Consensus 26 Ek~~~l~ia~~l~~~L~~~~G~~V~-----ltR~ 54 (179)
T 1jwq_A 26 EKTFNLAMALKVESILKQNPKLEVV-----LTRS 54 (179)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEEE-----ESCS
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEE-----EeCC
Confidence 3355566677889999999 99884 5664
No 112
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=29.78 E-value=31 Score=33.29 Aligned_cols=19 Identities=11% Similarity=0.363 Sum_probs=15.2
Q ss_pred HHHHHHHHCCCceeeceeEEeCC
Q 003962 294 EMLLRIKQQGLDITPQILIITRL 316 (783)
Q Consensus 294 eLa~~L~~~GheV~~~i~VvT~~ 316 (783)
.+++.|.++|++|. +++|.
T Consensus 15 ~l~~~L~~~g~~V~----~~~R~ 33 (224)
T 3h2s_A 15 AIVAEARRRGHEVL----AVVRD 33 (224)
T ss_dssp HHHHHHHHTTCEEE----EEESC
T ss_pred HHHHHHHHCCCEEE----EEEec
Confidence 45677889999998 88875
No 113
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=29.59 E-value=47 Score=32.55 Aligned_cols=39 Identities=13% Similarity=0.193 Sum_probs=23.5
Q ss_pred CcceEEEEcccccccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHC--CCcee
Q 003962 253 MVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQ--GLDIT 307 (783)
Q Consensus 253 m~~rI~iis~h~~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~--GheV~ 307 (783)
|+|||++|.-|- + |..+|.. ++|.+.+++.+.++ |++|+
T Consensus 3 mM~kiLiI~gSp--r-------~~~~S~s-------~~l~~~~~~~~~~~~~g~ev~ 43 (211)
T 3p0r_A 3 AMTKVLFVKANN--R-------PAEQAVS-------VKLYEAFLASYKEAHPNDTVV 43 (211)
T ss_dssp -CCEEEEEECCC--S-------CTTTCHH-------HHHHHHHHHHHHHHCTTSEEE
T ss_pred ccCEEEEEEeCC--C-------CCCCCHH-------HHHHHHHHHHHHHhCCCCeEE
Confidence 789999997432 2 1134432 33444666778777 89988
No 114
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=29.52 E-value=26 Score=33.91 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=15.6
Q ss_pred HHHHHHHHCCCceeeceeEEeCCC
Q 003962 294 EMLLRIKQQGLDITPQILIITRLL 317 (783)
Q Consensus 294 eLa~~L~~~GheV~~~i~VvT~~~ 317 (783)
.+++.|.++|++|. ++++..
T Consensus 19 ~l~~~L~~~g~~V~----~~~r~~ 38 (227)
T 3dhn_A 19 ALLNEALNRGFEVT----AVVRHP 38 (227)
T ss_dssp HHHHHHHTTTCEEE----EECSCG
T ss_pred HHHHHHHHCCCEEE----EEEcCc
Confidence 45677889999998 887753
No 115
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=29.07 E-value=35 Score=32.67 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=23.1
Q ss_pred ccCCCcceEEEEcccccccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHCCCcee
Q 003962 249 GRIPMVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDIT 307 (783)
Q Consensus 249 ~~~pm~~rI~iis~h~~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~GheV~ 307 (783)
.++.+.|||+|=|.|+-+ + |-+.+.+.|.++||+|.
T Consensus 15 ~~~~~~MkIaIgsDhaG~--------------~---------lK~~i~~~L~~~G~eV~ 50 (169)
T 3ph3_A 15 VPRGSHMKIGIGSDHGGY--------------N---------LKREIADFLKKRGYEVI 50 (169)
T ss_dssp ------CEEEEEECGGGH--------------H---------HHHHHHHHHHHTTCEEE
T ss_pred cccCCCCEEEEEeCchHH--------------H---------HHHHHHHHHHHCCCEEE
Confidence 356778999999999732 1 23366778899999987
No 116
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=28.84 E-value=2.4e+02 Score=29.14 Aligned_cols=37 Identities=11% Similarity=0.222 Sum_probs=25.9
Q ss_pred ceEEEEcccccccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHCCCceeeceeEEeCCCC
Q 003962 255 FNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLP 318 (783)
Q Consensus 255 ~rI~iis~h~~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~GheV~~~i~VvT~~~~ 318 (783)
|||++-...|+.. ..+. .|++.|++.| +|. |+++...
T Consensus 1 M~ILlTNDDGi~A--------------pGi~--------aL~~aL~~~g-~V~----VVAP~~~ 37 (280)
T 1l5x_A 1 MKILVTNDDGVHS--------------PGLR--------LLYQFALSLG-DVD----VVAPESP 37 (280)
T ss_dssp CEEEEECSSCTTC--------------HHHH--------HHHHHHGGGS-EEE----EEEESSC
T ss_pred CeEEEEcCCCCCc--------------HhHH--------HHHHHHHhCC-CEE----EEecCCC
Confidence 7899999888732 2244 4556677778 888 8887643
No 117
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=28.54 E-value=2.6e+02 Score=23.43 Aligned_cols=106 Identities=9% Similarity=0.096 Sum_probs=64.4
Q ss_pred CeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHc--cCcEEEeCCC-CC-CCc
Q 003962 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICD--TKGAFVQPAL-YE-AFG 654 (783)
Q Consensus 579 ~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~--aadvfV~PS~-~E-~fG 654 (783)
..+++|+.+.+ .....+....+..+. +|.... +..+....+.. ..|+++.-.. .+ .-|
T Consensus 5 ~~~ilivdd~~----------~~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g 66 (132)
T 2rdm_A 5 AVTILLADDEA----------ILLLDFESTLTDAGF--LVTAVS------SGAKAIEMLKSGAAIDGVVTDIRFCQPPDG 66 (132)
T ss_dssp SCEEEEECSSH----------HHHHHHHHHHHHTTC--EEEEES------SHHHHHHHHHTTCCCCEEEEESCCSSSSCH
T ss_pred CceEEEEcCcH----------HHHHHHHHHHHHcCC--EEEEEC------CHHHHHHHHHcCCCCCEEEEeeeCCCCCCH
Confidence 45778887763 234556666665553 344332 34666676664 3577776433 33 467
Q ss_pred HHHHHHHH---cCCcEEEc-Cccccc---cccccCceEEEECCCCHHHHHHHHHHHH
Q 003962 655 LTVVEAMT---CGLPTFAT-CKGGPA---EIIVNGKSGYHIDPYHGEQAAEILVDFF 704 (783)
Q Consensus 655 ltvlEAMa---~GlPVVat-~~GG~~---EiI~dg~~G~li~p~d~e~lAeaI~~~l 704 (783)
+.+++.+. ..+|+|.. ...... +.+.. .|++..|.+.+++..+|..++
T Consensus 67 ~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~--~~~l~kP~~~~~l~~~i~~~~ 121 (132)
T 2rdm_A 67 WQVARVAREIDPNMPIVYISGHAALEWASNGVPD--SIILEKPFTSAQLITAVSQLL 121 (132)
T ss_dssp HHHHHHHHHHCTTCCEEEEESSCCTTHHHHSCTT--CEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEeCCccHHHHHhhcCC--cceEeCCCCHHHHHHHHHHHH
Confidence 77777664 36888774 333222 22222 279999999999999997765
No 118
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=28.10 E-value=3e+02 Score=24.00 Aligned_cols=108 Identities=9% Similarity=0.127 Sum_probs=66.0
Q ss_pred CeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHc-cCcEEEeCCC-CCCCcHH
Q 003962 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICD-TKGAFVQPAL-YEAFGLT 656 (783)
Q Consensus 579 ~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~-aadvfV~PS~-~E~fGlt 656 (783)
..+++|+.+.+ .....+....+..+. .|.... +..+....+.. ..|++++-.. .+.-|+.
T Consensus 7 ~~~iLivdd~~----------~~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~ 68 (154)
T 2rjn_A 7 NYTVMLVDDEQ----------PILNSLKRLIKRLGC--NIITFT------SPLDALEALKGTSVQLVISDMRMPEMGGEV 68 (154)
T ss_dssp CCEEEEECSCH----------HHHHHHHHHHHTTTC--EEEEES------CHHHHHHHHTTSCCSEEEEESSCSSSCHHH
T ss_pred CCeEEEEcCCH----------HHHHHHHHHHHHcCC--eEEEeC------CHHHHHHHHhcCCCCEEEEecCCCCCCHHH
Confidence 46778887763 234555666665543 344332 34566666643 3477776432 3445677
Q ss_pred HHHHHH---cCCcEEEc-Ccccc---ccccccC-ceEEEECCCCHHHHHHHHHHHH
Q 003962 657 VVEAMT---CGLPTFAT-CKGGP---AEIIVNG-KSGYHIDPYHGEQAAEILVDFF 704 (783)
Q Consensus 657 vlEAMa---~GlPVVat-~~GG~---~EiI~dg-~~G~li~p~d~e~lAeaI~~~l 704 (783)
+++.+. ..+|+|.. ..... .+.+..| ..+++..|.+.+++..+|..++
T Consensus 69 ~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~ 124 (154)
T 2rjn_A 69 FLEQVAKSYPDIERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGL 124 (154)
T ss_dssp HHHHHHHHCTTSEEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcEEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHH
Confidence 766664 36787764 33332 2334455 7899999999999999997665
No 119
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=27.97 E-value=61 Score=33.54 Aligned_cols=38 Identities=11% Similarity=0.056 Sum_probs=24.7
Q ss_pred CCcceEEEEcccccccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHCCCcee
Q 003962 252 PMVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDIT 307 (783)
Q Consensus 252 pm~~rI~iis~h~~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~GheV~ 307 (783)
.++|||++|+ |.|..+|.... |++.+++.+.+.|++|+
T Consensus 56 ~~~mKILiI~-----------GS~R~~S~T~~-------La~~~~~~l~~~G~eve 93 (279)
T 2fzv_A 56 APPVRILLLY-----------GSLRARSFSRL-------AVEEAARLLQFFGAETR 93 (279)
T ss_dssp CSCCEEEEEE-----------SCCSSSCHHHH-------HHHHHHHHHHHTTCEEE
T ss_pred CCCCEEEEEE-----------eCCCCCCHHHH-------HHHHHHHHHhhCCCEEE
Confidence 4578999996 23334554433 33456667778899998
No 120
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=27.84 E-value=2.8e+02 Score=23.53 Aligned_cols=108 Identities=13% Similarity=0.076 Sum_probs=67.6
Q ss_pred CeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHc-cCcEEEeCCC-CCCCcHH
Q 003962 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICD-TKGAFVQPAL-YEAFGLT 656 (783)
Q Consensus 579 ~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~-aadvfV~PS~-~E~fGlt 656 (783)
..+++|+.+.+ .....+....+..+ -.|.... +..+....+.. ..|+++.-.. .+.-|+.
T Consensus 7 ~~~ilivdd~~----------~~~~~l~~~L~~~~--~~v~~~~------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~ 68 (137)
T 3hdg_A 7 ALKILIVEDDT----------DAREWLSTIISNHF--PEVWSAG------DGEEGERLFGLHAPDVIITDIRMPKLGGLE 68 (137)
T ss_dssp CCCEEEECSCH----------HHHHHHHHHHHTTC--SCEEEES------SHHHHHHHHHHHCCSEEEECSSCSSSCHHH
T ss_pred ccEEEEEeCCH----------HHHHHHHHHHHhcC--cEEEEEC------CHHHHHHHHhccCCCEEEEeCCCCCCCHHH
Confidence 35678887763 23445556555532 2454443 23455555432 3577777443 4556777
Q ss_pred HHHHHHc---CCcEEEc-Cccc---cccccccCceEEEECCCCHHHHHHHHHHHH
Q 003962 657 VVEAMTC---GLPTFAT-CKGG---PAEIIVNGKSGYHIDPYHGEQAAEILVDFF 704 (783)
Q Consensus 657 vlEAMa~---GlPVVat-~~GG---~~EiI~dg~~G~li~p~d~e~lAeaI~~~l 704 (783)
+++.+.. .+|+|.. .... ..+.+..|..+++..|.+.+++.++|.+++
T Consensus 69 ~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 123 (137)
T 3hdg_A 69 MLDRIKAGGAKPYVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFR 123 (137)
T ss_dssp HHHHHHHTTCCCEEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHH
Confidence 7776654 6788774 3322 234556788999999999999999997765
No 121
>1uan_A Hypothetical protein TT1542; rossmann-like, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.00A {Thermus thermophilus} SCOP: c.134.1.1
Probab=27.63 E-value=2.4e+02 Score=27.79 Aligned_cols=17 Identities=47% Similarity=0.546 Sum_probs=11.8
Q ss_pred HHHHCCCceeeceeEEeCC
Q 003962 298 RIKQQGLDITPQILIITRL 316 (783)
Q Consensus 298 ~L~~~GheV~~~i~VvT~~ 316 (783)
.++++|++|. ++++|..
T Consensus 24 ~~~~~G~~v~--vv~lT~G 40 (227)
T 1uan_A 24 RAKAEGLSTG--ILDLTRG 40 (227)
T ss_dssp HHHHTTCCEE--EEEEECC
T ss_pred HHHhCCCcEE--EEEEcCC
Confidence 3568999998 5555654
No 122
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=27.62 E-value=2.7e+02 Score=23.28 Aligned_cols=108 Identities=12% Similarity=0.215 Sum_probs=66.4
Q ss_pred CeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHc-cCcEEEeCCC-CCCCcHH
Q 003962 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICD-TKGAFVQPAL-YEAFGLT 656 (783)
Q Consensus 579 ~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~-aadvfV~PS~-~E~fGlt 656 (783)
+.+++|+.+.+ .....+....+..+. .|.... +..+....+.+ ..|+++.-.. ...-|+.
T Consensus 3 ~~~ilivdd~~----------~~~~~l~~~l~~~~~--~v~~~~------~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~ 64 (126)
T 1dbw_A 3 DYTVHIVDDEE----------PVRKSLAFMLTMNGF--AVKMHQ------SAEAFLAFAPDVRNGVLVTDLRMPDMSGVE 64 (126)
T ss_dssp CCEEEEEESSH----------HHHHHHHHHHHHTTC--EEEEES------CHHHHHHHGGGCCSEEEEEECCSTTSCHHH
T ss_pred CCEEEEEcCCH----------HHHHHHHHHHHhCCc--EEEEeC------CHHHHHHHHhcCCCCEEEEECCCCCCCHHH
Confidence 35678888764 234555666665543 344332 34556665543 2567665332 2345777
Q ss_pred HHHHHH---cCCcEEE-cCccc---cccccccCceEEEECCCCHHHHHHHHHHHH
Q 003962 657 VVEAMT---CGLPTFA-TCKGG---PAEIIVNGKSGYHIDPYHGEQAAEILVDFF 704 (783)
Q Consensus 657 vlEAMa---~GlPVVa-t~~GG---~~EiI~dg~~G~li~p~d~e~lAeaI~~~l 704 (783)
+++.+. ..+|+|. |.... ..+.+..|..|++..|.+.+++.++|..++
T Consensus 65 ~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~ 119 (126)
T 1dbw_A 65 LLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERAS 119 (126)
T ss_dssp HHHHHHHTTCCCCEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCEEEEECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHH
Confidence 777664 3678876 33333 234456788999999999999999996654
No 123
>3qay_A Endolysin; amidase A/B fold, lyase; 2.00A {Clostridium phage PHICD27}
Probab=27.60 E-value=85 Score=30.07 Aligned_cols=53 Identities=17% Similarity=0.261 Sum_probs=34.6
Q ss_pred ceEEEEcccccccccCCCCC-C-CCCcchhhHHHHHHHHHHHHHHHHHHCCCceeeceeEEeCC
Q 003962 255 FNVVILTPHGYFAQDDVLGY-P-DTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRL 316 (783)
Q Consensus 255 ~rI~iis~h~~~~~~~~lg~-p-~tGG~~vyv~d~araL~~eLa~~L~~~GheV~~~i~VvT~~ 316 (783)
|+|+|=.-||...| |. + ..|| ++=.|...+++..|.+.|.+.|++|. +++||.
T Consensus 2 m~IviDpGHGG~D~----G~~~ga~g~--~~Ekdi~l~ia~~l~~~L~~~G~~V~---v~ltR~ 56 (180)
T 3qay_A 2 MKICITVGHSILKS----GACTSADGV--VNEYQYNKSLAPVLADTFRKEGHKVD---VIICPE 56 (180)
T ss_dssp CEEEEEECCCBCTT----SCBCSCBSS--SBHHHHHHHHHHHHHHHHHHTTCEEE---EECCCS
T ss_pred eEEEEECCCCCCCC----CCcCCCCCC--ccHHHHHHHHHHHHHHHHHhcCCcce---EEECCC
Confidence 78888888985332 21 1 1243 34455666777799999999999984 155653
No 124
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=27.57 E-value=3.1e+02 Score=23.91 Aligned_cols=106 Identities=9% Similarity=0.031 Sum_probs=65.3
Q ss_pred eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHcc-C-cEEEeCC-CCCCCcHH
Q 003962 580 VNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDT-K-GAFVQPA-LYEAFGLT 656 (783)
Q Consensus 580 ~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~a-a-dvfV~PS-~~E~fGlt 656 (783)
.+++|+.+.+. ..+.+....+. + -.|... .+..+....+... . |+++.-. ..+.-|+.
T Consensus 5 ~~ILivdd~~~----------~~~~l~~~L~~-~--~~v~~~------~~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~ 65 (151)
T 3kcn_A 5 ERILLVDDDYS----------LLNTLKRNLSF-D--FEVTTC------ESGPEALACIKKSDPFSVIMVDMRMPGMEGTE 65 (151)
T ss_dssp CEEEEECSCHH----------HHHHHHHHHTT-T--SEEEEE------SSHHHHHHHHHHSCCCSEEEEESCCSSSCHHH
T ss_pred CeEEEEeCCHH----------HHHHHHHHhcc-C--ceEEEe------CCHHHHHHHHHcCCCCCEEEEeCCCCCCcHHH
Confidence 56788877632 23344444432 2 234433 2456677777643 3 7777643 34556777
Q ss_pred HHHHHH---cCCcEEE-cCccc---cccccccC-ceEEEECCCCHHHHHHHHHHHH
Q 003962 657 VVEAMT---CGLPTFA-TCKGG---PAEIIVNG-KSGYHIDPYHGEQAAEILVDFF 704 (783)
Q Consensus 657 vlEAMa---~GlPVVa-t~~GG---~~EiI~dg-~~G~li~p~d~e~lAeaI~~~l 704 (783)
+++.+. ..+|+|. |.... ..+.+..| ..+++..|.+.+++..+|..++
T Consensus 66 ~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l 121 (151)
T 3kcn_A 66 VIQKARLISPNSVYLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGI 121 (151)
T ss_dssp HHHHHHHHCSSCEEEEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCcEEEEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHH
Confidence 777654 3677776 33332 23445567 7899999999999999997776
No 125
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=27.47 E-value=2.8e+02 Score=23.36 Aligned_cols=76 Identities=7% Similarity=0.043 Sum_probs=49.7
Q ss_pred hHHHHHHHH-ccCcEEEeCC-CCCCCcHHHHHHHHc-----CCcEEEc-Ccc--ccccccccCceEEEECCCCHHHHHHH
Q 003962 630 NGELYRYIC-DTKGAFVQPA-LYEAFGLTVVEAMTC-----GLPTFAT-CKG--GPAEIIVNGKSGYHIDPYHGEQAAEI 699 (783)
Q Consensus 630 ~~el~~~ia-~aadvfV~PS-~~E~fGltvlEAMa~-----GlPVVat-~~G--G~~EiI~dg~~G~li~p~d~e~lAea 699 (783)
..+....+. ...|+++.-. ..+.-|+.+++.+.. ++|+|.. ... ...+....|..+++..|.+++++.++
T Consensus 36 ~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~ 115 (133)
T 3nhm_A 36 GASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPVPDAYLVKPVKPPVLIAQ 115 (133)
T ss_dssp HHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSCCCSEEEESSCCHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhcCCceEEeccCCHHHHHHH
Confidence 445555553 2357777643 345567778777764 6788774 322 12445667888999999999999999
Q ss_pred HHHHHH
Q 003962 700 LVDFFE 705 (783)
Q Consensus 700 I~~~l~ 705 (783)
|..+++
T Consensus 116 i~~~l~ 121 (133)
T 3nhm_A 116 LHALLA 121 (133)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 987774
No 126
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=27.37 E-value=2.2e+02 Score=26.86 Aligned_cols=106 Identities=14% Similarity=0.162 Sum_probs=64.9
Q ss_pred EEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHccCcEEEeCC-CCCCCcHHHHH
Q 003962 581 NLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPA-LYEAFGLTVVE 659 (783)
Q Consensus 581 ~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~aadvfV~PS-~~E~fGltvlE 659 (783)
+++|+.+.+ ...+.+....+..+ .|.... +..+....+ ...|+++.-. ..+.-|+.+++
T Consensus 4 ~ilivdd~~----------~~~~~l~~~L~~~~---~v~~~~------~~~~al~~~-~~~dlvllD~~lp~~~g~~~~~ 63 (220)
T 1p2f_A 4 KIAVVDDDK----------NILKKVSEKLQQLG---RVKTFL------TGEDFLNDE-EAFHVVVLDVMLPDYSGYEICR 63 (220)
T ss_dssp EEEEECSCH----------HHHHHHHHHHTTTE---EEEEES------SHHHHHHCC-SCCSEEEEESBCSSSBHHHHHH
T ss_pred eEEEEeCCH----------HHHHHHHHHHHhCC---CEEEEC------CHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHH
Confidence 567777663 22344555554433 343332 234555544 3478777633 23445777777
Q ss_pred HHH---cCCcEEEc-Cccc---cccccccCceEEEECCCCHHHHHHHHHHHHHH
Q 003962 660 AMT---CGLPTFAT-CKGG---PAEIIVNGKSGYHIDPYHGEQAAEILVDFFEK 706 (783)
Q Consensus 660 AMa---~GlPVVat-~~GG---~~EiI~dg~~G~li~p~d~e~lAeaI~~~l~~ 706 (783)
.+. ..+|+|.. .... ..+.+..|..|++..|.+++++..+|..++..
T Consensus 64 ~lr~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 117 (220)
T 1p2f_A 64 MIKETRPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLER 117 (220)
T ss_dssp HHHHHCTTSEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCcEEEEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 664 46888773 3332 23445678899999999999999999887754
No 127
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=27.30 E-value=39 Score=34.88 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=15.4
Q ss_pred HHHHHHHHCCCceeeceeEEeCCC
Q 003962 294 EMLLRIKQQGLDITPQILIITRLL 317 (783)
Q Consensus 294 eLa~~L~~~GheV~~~i~VvT~~~ 317 (783)
.+++.|.++||+|. ++++..
T Consensus 28 ~l~~~L~~~g~~V~----~~~r~~ 47 (342)
T 2x4g_A 28 HAARAIRAAGHDLV----LIHRPS 47 (342)
T ss_dssp HHHHHHHHTTCEEE----EEECTT
T ss_pred HHHHHHHHCCCEEE----EEecCh
Confidence 45567888999998 888753
No 128
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=26.85 E-value=3e+02 Score=23.56 Aligned_cols=107 Identities=16% Similarity=0.225 Sum_probs=67.0
Q ss_pred eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHH-ccCcEEEeCCC-CCCCcHHH
Q 003962 580 VNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYIC-DTKGAFVQPAL-YEAFGLTV 657 (783)
Q Consensus 580 ~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia-~aadvfV~PS~-~E~fGltv 657 (783)
.+++|+.+.+ .....+....+..+. .|.... +..+....+. ...|++++-.. -+.-|+.+
T Consensus 5 ~~iLivdd~~----------~~~~~l~~~L~~~g~--~v~~~~------~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~ 66 (136)
T 3t6k_A 5 HTLLIVDDDD----------TVAEMLELVLRGAGY--EVRRAA------SGEEALQQIYKNLPDALICDVLLPGIDGYTL 66 (136)
T ss_dssp CEEEEECSCH----------HHHHHHHHHHHHTTC--EEEEES------SHHHHHHHHHHSCCSEEEEESCCSSSCHHHH
T ss_pred CEEEEEeCCH----------HHHHHHHHHHHHCCC--EEEEeC------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHH
Confidence 4677777653 234555666666553 344332 3455555554 23577776433 34467788
Q ss_pred HHHHHc-----CCcEEE-cCcccc---ccccccCceEEEECCCCHHHHHHHHHHHH
Q 003962 658 VEAMTC-----GLPTFA-TCKGGP---AEIIVNGKSGYHIDPYHGEQAAEILVDFF 704 (783)
Q Consensus 658 lEAMa~-----GlPVVa-t~~GG~---~EiI~dg~~G~li~p~d~e~lAeaI~~~l 704 (783)
++.+.. .+|+|. |..+.. .+.+..|..+|+..|.+.+++..+|..++
T Consensus 67 ~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l 122 (136)
T 3t6k_A 67 CKRVRQHPLTKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNIL 122 (136)
T ss_dssp HHHHHHSGGGTTCCEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHH
T ss_pred HHHHHcCCCcCCccEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHH
Confidence 777743 578876 333332 33456788999999999999999997766
No 129
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=26.82 E-value=44 Score=34.28 Aligned_cols=20 Identities=20% Similarity=0.117 Sum_probs=15.3
Q ss_pred HHHHHHHHCCCceeeceeEEeCCC
Q 003962 294 EMLLRIKQQGLDITPQILIITRLL 317 (783)
Q Consensus 294 eLa~~L~~~GheV~~~i~VvT~~~ 317 (783)
.+++.|.++|++|. +++|..
T Consensus 26 ~l~~~L~~~g~~V~----~l~R~~ 45 (318)
T 2r6j_A 26 HMVKGSLKLGHPTY----VFTRPN 45 (318)
T ss_dssp HHHHHHHHTTCCEE----EEECTT
T ss_pred HHHHHHHHCCCcEE----EEECCC
Confidence 34566788999998 888864
No 130
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=26.66 E-value=2.2e+02 Score=24.42 Aligned_cols=107 Identities=9% Similarity=0.162 Sum_probs=65.0
Q ss_pred eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHc-cCcEEEeCCCCCCCcHHHH
Q 003962 580 VNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICD-TKGAFVQPALYEAFGLTVV 658 (783)
Q Consensus 580 ~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~-aadvfV~PS~~E~fGltvl 658 (783)
.+++|+.+.+ .....+....+..+. .|.... +..+....+.. ..|+++.-...+.-|+.++
T Consensus 5 ~~iLivdd~~----------~~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlvi~d~~~~~~g~~~~ 66 (142)
T 2qxy_A 5 PTVMVVDESR----------ITFLAVKNALEKDGF--NVIWAK------NEQEAFTFLRREKIDLVFVDVFEGEESLNLI 66 (142)
T ss_dssp CEEEEECSCH----------HHHHHHHHHHGGGTC--EEEEES------SHHHHHHHHTTSCCSEEEEECTTTHHHHHHH
T ss_pred CeEEEEeCCH----------HHHHHHHHHHHhCCC--EEEEEC------CHHHHHHHHhccCCCEEEEeCCCCCcHHHHH
Confidence 4677777663 234556666666553 444332 34555555543 2567766442222455566
Q ss_pred HHHH---cCCcEEEc-Cccc---cccccccCceEEEECCCCHHHHHHHHHHHH
Q 003962 659 EAMT---CGLPTFAT-CKGG---PAEIIVNGKSGYHIDPYHGEQAAEILVDFF 704 (783)
Q Consensus 659 EAMa---~GlPVVat-~~GG---~~EiI~dg~~G~li~p~d~e~lAeaI~~~l 704 (783)
+.+. ..+|+|.. .... ..+.+..|..+++..|.+.+++..+|..++
T Consensus 67 ~~l~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 119 (142)
T 2qxy_A 67 RRIREEFPDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKII 119 (142)
T ss_dssp HHHHHHCTTCEEEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCEEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHH
Confidence 6553 36888764 3332 233456788999999999999999997766
No 131
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=26.63 E-value=2.9e+02 Score=23.22 Aligned_cols=108 Identities=10% Similarity=0.100 Sum_probs=65.3
Q ss_pred CeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHc-cCcEEEeCCC-CCCCcHH
Q 003962 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICD-TKGAFVQPAL-YEAFGLT 656 (783)
Q Consensus 579 ~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~-aadvfV~PS~-~E~fGlt 656 (783)
..+++|+.+.+ .....+....+..+. .+.... +..+....+.. ..|+++.-.. .+.-|+.
T Consensus 7 ~~~ilivdd~~----------~~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~ 68 (130)
T 3eod_A 7 GKQILIVEDEQ----------VFRSLLDSWFSSLGA--TTVLAA------DGVDALELLGGFTPDLMICDIAMPRMNGLK 68 (130)
T ss_dssp TCEEEEECSCH----------HHHHHHHHHHHHTTC--EEEEES------CHHHHHHHHTTCCCSEEEECCC-----CHH
T ss_pred CCeEEEEeCCH----------HHHHHHHHHHHhCCc--eEEEeC------CHHHHHHHHhcCCCCEEEEecCCCCCCHHH
Confidence 46788888764 234566666776653 344332 34566666643 2577776433 3446777
Q ss_pred HHHHHHc---CCcEEEc-Ccccc---ccccccCceEEEECCC-CHHHHHHHHHHHH
Q 003962 657 VVEAMTC---GLPTFAT-CKGGP---AEIIVNGKSGYHIDPY-HGEQAAEILVDFF 704 (783)
Q Consensus 657 vlEAMa~---GlPVVat-~~GG~---~EiI~dg~~G~li~p~-d~e~lAeaI~~~l 704 (783)
+++.+.. .+|+|.. ..... .+.+..|..+++..|. +.+.+.+++..++
T Consensus 69 ~~~~l~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l 124 (130)
T 3eod_A 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 (130)
T ss_dssp HHHHHHHTTCCCCEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHh
Confidence 7776653 5788763 33222 3455678999999998 8999999996665
No 132
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=26.56 E-value=2.8e+02 Score=23.12 Aligned_cols=108 Identities=16% Similarity=0.238 Sum_probs=66.7
Q ss_pred eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHc-cCcEEEeCCC-CCCCcHHH
Q 003962 580 VNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICD-TKGAFVQPAL-YEAFGLTV 657 (783)
Q Consensus 580 ~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~-aadvfV~PS~-~E~fGltv 657 (783)
.+++|+.+.+ .....+....+..+. ..|.... +..+....+.. ..|+++.-.. .+.-|+.+
T Consensus 5 ~~ilivdd~~----------~~~~~l~~~l~~~~~-~~v~~~~------~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~l 67 (128)
T 1jbe_A 5 LKFLVVDDFS----------TMRRIVRNLLKELGF-NNVEEAE------DGVDALNKLQAGGYGFVISDWNMPNMDGLEL 67 (128)
T ss_dssp CCEEEECSCH----------HHHHHHHHHHHHTTC-CCEEEES------SHHHHHHHHTTCCCCEEEEESCCSSSCHHHH
T ss_pred cEEEEECCCH----------HHHHHHHHHHHHcCC-cEEEeeC------CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 4677777653 234555666666553 2344332 23555665543 2577766332 34467888
Q ss_pred HHHHHc-----CCcEEE-cCccc---cccccccCceEEEECCCCHHHHHHHHHHHH
Q 003962 658 VEAMTC-----GLPTFA-TCKGG---PAEIIVNGKSGYHIDPYHGEQAAEILVDFF 704 (783)
Q Consensus 658 lEAMa~-----GlPVVa-t~~GG---~~EiI~dg~~G~li~p~d~e~lAeaI~~~l 704 (783)
++.+.. .+|+|. |.... ..+.+..|..+++..|.+.+++.++|..++
T Consensus 68 ~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~ 123 (128)
T 1jbe_A 68 LKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIF 123 (128)
T ss_dssp HHHHHC--CCTTCCEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHhhcccCCCcEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHH
Confidence 888764 567776 33322 234456788999999999999999997665
No 133
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=26.23 E-value=2.9e+02 Score=23.23 Aligned_cols=107 Identities=8% Similarity=0.107 Sum_probs=63.3
Q ss_pred eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEE-EccCCCCcCChHHHHHHH-HccCcEEEeCC-CCCCCcHH
Q 003962 580 VNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFR-WISSQMNRVRNGELYRYI-CDTKGAFVQPA-LYEAFGLT 656 (783)
Q Consensus 580 ~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~-flG~~~~~~~~~el~~~i-a~aadvfV~PS-~~E~fGlt 656 (783)
.+++|+.+.+ ...+.+....++.+. .+. ... +..+....+ ....|+++.-. ..+.-|+.
T Consensus 2 ~~ilivdd~~----------~~~~~l~~~L~~~g~--~v~~~~~------~~~~a~~~~~~~~~dlii~d~~l~~~~g~~ 63 (134)
T 3f6c_A 2 LNAIIIDDHP----------LAIAAIRNLLIKNDI--EILAELT------EGGSAVQRVETLKPDIVIIDVDIPGVNGIQ 63 (134)
T ss_dssp EEEEEECCCH----------HHHHHHHHHHHHTTE--EEEEEES------SSTTHHHHHHHHCCSEEEEETTCSSSCHHH
T ss_pred eEEEEEcCCH----------HHHHHHHHHHhhCCc--EEEEEcC------CHHHHHHHHHhcCCCEEEEecCCCCCChHH
Confidence 4667777663 234556666666552 232 222 122333333 22467777643 34456777
Q ss_pred HHHHHHc---CCcEEE-cCccc---cccccccCceEEEECCCCHHHHHHHHHHHH
Q 003962 657 VVEAMTC---GLPTFA-TCKGG---PAEIIVNGKSGYHIDPYHGEQAAEILVDFF 704 (783)
Q Consensus 657 vlEAMa~---GlPVVa-t~~GG---~~EiI~dg~~G~li~p~d~e~lAeaI~~~l 704 (783)
+++.+.. .+|+|. |.... ..+.+..|..|++..|.+.+++.++|..++
T Consensus 64 ~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 118 (134)
T 3f6c_A 64 VLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAK 118 (134)
T ss_dssp HHHHHHHTTCCSEEEEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCeEEEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHH
Confidence 7776653 567776 33322 334456788999999999999999997665
No 134
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=25.84 E-value=43 Score=31.55 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=15.2
Q ss_pred HHHHHHHHCCCceeeceeEEeCC
Q 003962 294 EMLLRIKQQGLDITPQILIITRL 316 (783)
Q Consensus 294 eLa~~L~~~GheV~~~i~VvT~~ 316 (783)
.+++.|.++|++|. ++++.
T Consensus 18 ~l~~~l~~~g~~V~----~~~r~ 36 (206)
T 1hdo_A 18 TTLAQAVQAGYEVT----VLVRD 36 (206)
T ss_dssp HHHHHHHHTTCEEE----EEESC
T ss_pred HHHHHHHHCCCeEE----EEEeC
Confidence 55677889999998 88875
No 135
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=25.31 E-value=3e+02 Score=23.06 Aligned_cols=108 Identities=11% Similarity=0.112 Sum_probs=65.6
Q ss_pred CeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHH-ccCcEEEeCCC-CCCCcHH
Q 003962 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYIC-DTKGAFVQPAL-YEAFGLT 656 (783)
Q Consensus 579 ~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia-~aadvfV~PS~-~E~fGlt 656 (783)
..+++|+.+.+ .....+....++.+. .|.... +..+....+. ...|+++.-.. .+.-|+.
T Consensus 6 ~~~ilivdd~~----------~~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlii~d~~l~~~~g~~ 67 (132)
T 3lte_A 6 SKRILVVDDDQ----------AMAAAIERVLKRDHW--QVEIAH------NGFDAGIKLSTFEPAIMTLDLSMPKLDGLD 67 (132)
T ss_dssp -CEEEEECSCH----------HHHHHHHHHHHHTTC--EEEEES------SHHHHHHHHHHTCCSEEEEESCBTTBCHHH
T ss_pred CccEEEEECCH----------HHHHHHHHHHHHCCc--EEEEeC------CHHHHHHHHHhcCCCEEEEecCCCCCCHHH
Confidence 35677887663 234556666666543 444332 3345555543 33577666433 4456788
Q ss_pred HHHHHHc-----CCcEEEcCcc---ccccccccCceEEEECCCCHHHHHHHHHHHH
Q 003962 657 VVEAMTC-----GLPTFATCKG---GPAEIIVNGKSGYHIDPYHGEQAAEILVDFF 704 (783)
Q Consensus 657 vlEAMa~-----GlPVVat~~G---G~~EiI~dg~~G~li~p~d~e~lAeaI~~~l 704 (783)
+++.+.. ..|++.+... ...+.+..|..+++..|.+.+++.++|....
T Consensus 68 ~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 123 (132)
T 3lte_A 68 VIRSLRQNKVANQPKILVVSGLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLV 123 (132)
T ss_dssp HHHHHHTTTCSSCCEEEEECCSCSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCccCCCeEEEEeCCChHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHc
Confidence 8888763 3455554322 2234456788999999999999999996554
No 136
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=25.25 E-value=36 Score=41.55 Aligned_cols=78 Identities=22% Similarity=0.373 Sum_probs=54.4
Q ss_pred hhhhhhHhhhhhhcCCCC------CchhHHHHHhhcccCCeeeecccCCC---------Ch---------HHHHHHHHHH
Q 003962 134 GVEFLNRHLSAKLFHDKE------SMHPLLEFLRVHCHKGKNMMLNDRIQ---------NL---------NSLQHVLRKA 189 (783)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~---------~~~~~~~~~~ 189 (783)
|||.|.++|-+|+|.+.. .++.-.+.|+.|.+.|+.--+..-|. |+ .+...-+..|
T Consensus 6 giQmLS~~Lh~QiF~~~~~~~~~~~v~~s~~hL~~H~L~gk~t~~~p~v~~~LP~L~G~nldEHF~~lg~~~s~PYl~~a 85 (1172)
T 3ikm_A 6 DIQMLSRGLHEQIFGQGGEMPGEAAVRRSVEHLQKHGLWGQPAVPLPDVELRLPPLYGDNLDQHFRLLAQKQSLPYLEAA 85 (1172)
T ss_dssp SSSCCCSSHHHHSCSSCCCCCTHHHHHHHHHTTTTTTCCSSSCCCCCCCCCCCCCCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhcCHHHHHhhCCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCCCCCCCCcCCCcCCCCHHHHHHHHHHHHhHHHHHHH
Confidence 899999999999996532 13445578999999998754443332 11 2334457777
Q ss_pred HHHhhcCCCCCCchHHHHHhhhcCcccCCC
Q 003962 190 EEYLTTVVPETPFSELALRFQEIGLERGWG 219 (783)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (783)
.+++....|.-| +.|-|.+||-
T Consensus 86 ~~~~~~~lP~~P--------~~W~~~~GWT 107 (1172)
T 3ikm_A 86 NLLLQAQLPPKP--------PAWAWAEGWT 107 (1172)
T ss_dssp HHHHHCCCCCCC--------CSCCCSSCCC
T ss_pred HHHHhcCCCCCC--------cCccccCCee
Confidence 777765555667 6899999994
No 137
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=25.04 E-value=3e+02 Score=22.96 Aligned_cols=108 Identities=10% Similarity=0.126 Sum_probs=65.6
Q ss_pred eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHc-cCcEEEeCCC-CCCCcHHH
Q 003962 580 VNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICD-TKGAFVQPAL-YEAFGLTV 657 (783)
Q Consensus 580 ~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~-aadvfV~PS~-~E~fGltv 657 (783)
.+++|+.+.+ .....+....+..+. ..|.... +..+....+.. ..|+++.-.. .+.-|+.+
T Consensus 7 ~~ilivdd~~----------~~~~~l~~~L~~~g~-~~v~~~~------~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~ 69 (129)
T 1p6q_A 7 IKVLIVDDQV----------TSRLLLGDALQQLGF-KQITAAG------DGEQGMKIMAQNPHHLVISDFNMPKMDGLGL 69 (129)
T ss_dssp CCEEEECSSH----------HHHHHHHHHHHTTTC-SCEECCS------SHHHHHHHHHTSCCSEEEECSSSCSSCHHHH
T ss_pred CeEEEEcCCH----------HHHHHHHHHHHHCCC-cEEEecC------CHHHHHHHHHcCCCCEEEEeCCCCCCCHHHH
Confidence 4677777763 234455566655443 2343322 34555565543 3577776433 24457778
Q ss_pred HHHHH-----cCCcEEEc-Ccccc---ccccccCceEEEECCCCHHHHHHHHHHHH
Q 003962 658 VEAMT-----CGLPTFAT-CKGGP---AEIIVNGKSGYHIDPYHGEQAAEILVDFF 704 (783)
Q Consensus 658 lEAMa-----~GlPVVat-~~GG~---~EiI~dg~~G~li~p~d~e~lAeaI~~~l 704 (783)
++.+. ..+|+|.. ..+.. .+.+..|..+++..|.+.+++..+|..++
T Consensus 70 ~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 125 (129)
T 1p6q_A 70 LQAVRANPATKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVF 125 (129)
T ss_dssp HHHHTTCTTSTTCEEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHH
T ss_pred HHHHhcCccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHH
Confidence 88774 35677764 33322 23456688999999999999999996654
No 138
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=24.63 E-value=42 Score=34.28 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=24.5
Q ss_pred CCcceEEEEcccccccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHCCCceeeceeEEeC
Q 003962 252 PMVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITR 315 (783)
Q Consensus 252 pm~~rI~iis~h~~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~GheV~~~i~VvT~ 315 (783)
||+|||+||...|..| ..|+..|.+.||+|. ++.+
T Consensus 9 ~mmm~I~iIG~tG~mG-------------------------~~la~~l~~~g~~V~----~~~r 43 (286)
T 3c24_A 9 VGPKTVAILGAGGKMG-------------------------ARITRKIHDSAHHLA----AIEI 43 (286)
T ss_dssp CCCCEEEEETTTSHHH-------------------------HHHHHHHHHSSSEEE----EECC
T ss_pred ccCCEEEEECCCCHHH-------------------------HHHHHHHHhCCCEEE----EEEC
Confidence 5778999996444321 156677889999887 6654
No 139
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=24.57 E-value=44 Score=33.98 Aligned_cols=38 Identities=13% Similarity=0.294 Sum_probs=25.4
Q ss_pred CCcceEEEEcccccccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHCCCceeeceeEEeCCCC
Q 003962 252 PMVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLP 318 (783)
Q Consensus 252 pm~~rI~iis~h~~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~GheV~~~i~VvT~~~~ 318 (783)
.|.|+|+|....|+.| . .+++.|.++||+|. ++++...
T Consensus 5 ~~~~~vlVtGatG~iG--------------~-----------~l~~~L~~~g~~V~----~~~r~~~ 42 (321)
T 3vps_A 5 TLKHRILITGGAGFIG--------------G-----------HLARALVASGEEVT----VLDDLRV 42 (321)
T ss_dssp --CCEEEEETTTSHHH--------------H-----------HHHHHHHHTTCCEE----EECCCSS
T ss_pred cCCCeEEEECCCChHH--------------H-----------HHHHHHHHCCCEEE----EEecCCc
Confidence 3567888887555532 2 45677888999998 8877543
No 140
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=24.47 E-value=39 Score=35.29 Aligned_cols=20 Identities=10% Similarity=-0.164 Sum_probs=15.5
Q ss_pred HHHHHHHHCCCceeeceeEEeCCC
Q 003962 294 EMLLRIKQQGLDITPQILIITRLL 317 (783)
Q Consensus 294 eLa~~L~~~GheV~~~i~VvT~~~ 317 (783)
.+++.|.++||+|. +++|..
T Consensus 25 ~l~~~L~~~g~~V~----~l~R~~ 44 (346)
T 3i6i_A 25 FVATASLDAHRPTY----ILARPG 44 (346)
T ss_dssp HHHHHHHHTTCCEE----EEECSS
T ss_pred HHHHHHHHCCCCEE----EEECCC
Confidence 45567788999998 888864
No 141
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=24.46 E-value=2.9e+02 Score=28.23 Aligned_cols=14 Identities=7% Similarity=-0.081 Sum_probs=10.2
Q ss_pred HHHHHHHHCCCcee
Q 003962 294 EMLLRIKQQGLDIT 307 (783)
Q Consensus 294 eLa~~L~~~GheV~ 307 (783)
.+++.|.++|+++.
T Consensus 39 ~l~~~L~~~g~~~~ 52 (346)
T 4egb_A 39 NFVHYMLQSYETYK 52 (346)
T ss_dssp HHHHHHHHHCTTEE
T ss_pred HHHHHHHhhCCCcE
Confidence 45677889996665
No 142
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=24.17 E-value=35 Score=35.56 Aligned_cols=48 Identities=8% Similarity=0.072 Sum_probs=30.4
Q ss_pred hhcHHHHhccCCC-cceEEEEcccccccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHCCCceeeceeEEeCCC
Q 003962 241 PCTLETFLGRIPM-VFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLL 317 (783)
Q Consensus 241 ~~~~~~f~~~~pm-~~rI~iis~h~~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~GheV~~~i~VvT~~~ 317 (783)
|++++.+....+| .|+|+|....|+. .. .+++.|.++||+|. ++++..
T Consensus 11 ~~~~~~~~~~~~~~~~~vlVtGatG~i--------------G~-----------~l~~~L~~~g~~V~----~~~r~~ 59 (351)
T 3ruf_A 11 MSRYEEITQQLIFSPKTWLITGVAGFI--------------GS-----------NLLEKLLKLNQVVI----GLDNFS 59 (351)
T ss_dssp CHHHHHHHHHHHHSCCEEEEETTTSHH--------------HH-----------HHHHHHHHTTCEEE----EEECCS
T ss_pred HHHHhhHHhhCCCCCCeEEEECCCcHH--------------HH-----------HHHHHHHHCCCEEE----EEeCCC
Confidence 3455555554443 4678877655543 22 45677889999998 888754
No 143
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=24.13 E-value=20 Score=36.27 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=23.6
Q ss_pred CcceEEEEcccccccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHCCCceeeceeEEeC
Q 003962 253 MVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITR 315 (783)
Q Consensus 253 m~~rI~iis~h~~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~GheV~~~i~VvT~ 315 (783)
|.|||+|....|+.| . .+++.|.++||+|. ++++
T Consensus 4 M~m~ilVtGatG~iG--------------~-----------~l~~~L~~~g~~V~----~~~r 37 (287)
T 3sc6_A 4 MKERVIITGANGQLG--------------K-----------QLQEELNPEEYDIY----PFDK 37 (287)
T ss_dssp -CEEEEEESTTSHHH--------------H-----------HHHHHSCTTTEEEE----EECT
T ss_pred ceeEEEEECCCCHHH--------------H-----------HHHHHHHhCCCEEE----Eecc
Confidence 567898887555532 2 45667888999998 7776
No 144
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=23.98 E-value=5.6e+02 Score=25.73 Aligned_cols=113 Identities=12% Similarity=0.043 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhHccCCCe-EEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHccC
Q 003962 563 LTGLVEWYGKNAKLRELV-NLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTK 641 (783)
Q Consensus 563 l~~LieA~~~l~~~~~~~-~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~aa 641 (783)
+..-++.+.++ .|+. ++.++++... .......+.+++.++++++ .+....... .....+....+....
T Consensus 126 ~~~~l~l~~~l---~P~~k~vgvi~~~~~-----~~s~~~~~~~~~~~~~~g~--~~v~~~~~~-~~~~~~~~~~l~~~~ 194 (302)
T 3lkv_A 126 VEQHVELIKEI---LPNVKSIGVVYNPGE-----ANAVSLMELLKLSAAKHGI--KLVEATALK-SADVQSATQAIAEKS 194 (302)
T ss_dssp HHHHHHHHHHH---STTCCEEEEEECTTC-----HHHHHHHHHHHHHHHHTTC--EEEEEECSS-GGGHHHHHHHHHTTC
T ss_pred HHHHHHHHHHh---CCCCCEEEEEeCCCc-----ccHHHHHHHHHHHHHHcCC--EEEEEecCC-hHHHHHHHHhccCCe
Confidence 44555555544 3433 4656665432 1223455677788888876 344444222 222334444445557
Q ss_pred cEEEeCCC---CCCCcHHHHHHHHcCCcEEEcCccccccccccCc-eEEEECC
Q 003962 642 GAFVQPAL---YEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGK-SGYHIDP 690 (783)
Q Consensus 642 dvfV~PS~---~E~fGltvlEAMa~GlPVVat~~GG~~EiI~dg~-~G~li~p 690 (783)
|++..|.- ..+......-+..+++||++.... .+.+|. .|+.+++
T Consensus 195 d~i~~~~d~~~~~~~~~i~~~~~~~~iPv~~~~~~----~v~~G~l~~~~~~~ 243 (302)
T 3lkv_A 195 DVIYALIDNTVASAIEGMIVAANQAKTPVFGAATS----YVERGAIASLGFDY 243 (302)
T ss_dssp SEEEECSCHHHHHTHHHHHHHHHHTTCCEEESSHH----HHHTTCSEEEECCH
T ss_pred eEEEEeCCcchhhHHHHHHHHHhhcCCceeecccc----cccCCceEEEecCH
Confidence 88877753 122233345567899999987543 344444 3455543
No 145
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=23.69 E-value=51 Score=33.79 Aligned_cols=20 Identities=20% Similarity=-0.024 Sum_probs=15.1
Q ss_pred HHHHHHHHCCCceeeceeEEeCCC
Q 003962 294 EMLLRIKQQGLDITPQILIITRLL 317 (783)
Q Consensus 294 eLa~~L~~~GheV~~~i~VvT~~~ 317 (783)
.+++.|.++||+|. +++|..
T Consensus 19 ~l~~~L~~~g~~V~----~~~R~~ 38 (321)
T 3c1o_A 19 FMVRASLSFSHPTF----IYARPL 38 (321)
T ss_dssp HHHHHHHHTTCCEE----EEECCC
T ss_pred HHHHHHHhCCCcEE----EEECCc
Confidence 34466788999998 888863
No 146
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=23.66 E-value=3.7e+02 Score=23.44 Aligned_cols=107 Identities=11% Similarity=0.181 Sum_probs=63.8
Q ss_pred eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHc-cCcEEEeCC-CCCCCcHHH
Q 003962 580 VNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICD-TKGAFVQPA-LYEAFGLTV 657 (783)
Q Consensus 580 ~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~-aadvfV~PS-~~E~fGltv 657 (783)
.+++|+.+.+ .....+....+..+. .|.... +..+....+.. ..|++++-. ..+.-|+.+
T Consensus 15 ~~ILivdd~~----------~~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~ 76 (153)
T 3hv2_A 15 PEILLVDSQE----------VILQRLQQLLSPLPY--TLHFAR------DATQALQLLASREVDLVISAAHLPQMDGPTL 76 (153)
T ss_dssp CEEEEECSCH----------HHHHHHHHHHTTSSC--EEEEES------SHHHHHHHHHHSCCSEEEEESCCSSSCHHHH
T ss_pred ceEEEECCCH----------HHHHHHHHHhcccCc--EEEEEC------CHHHHHHHHHcCCCCEEEEeCCCCcCcHHHH
Confidence 5677777653 233445555555442 344332 33455555432 346666643 234557777
Q ss_pred HHHHH---cCCcEEEc-Cccc---cccccccC-ceEEEECCCCHHHHHHHHHHHH
Q 003962 658 VEAMT---CGLPTFAT-CKGG---PAEIIVNG-KSGYHIDPYHGEQAAEILVDFF 704 (783)
Q Consensus 658 lEAMa---~GlPVVat-~~GG---~~EiI~dg-~~G~li~p~d~e~lAeaI~~~l 704 (783)
++.+. ..+|+|.. .... ..+.+..| ..+|+..|.+.+++..+|..++
T Consensus 77 ~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l 131 (153)
T 3hv2_A 77 LARIHQQYPSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQAL 131 (153)
T ss_dssp HHHHHHHCTTSEEEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHH
T ss_pred HHHHHhHCCCCeEEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHH
Confidence 76664 46788764 3332 23345567 7899999999999999997766
No 147
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=23.53 E-value=1e+02 Score=28.81 Aligned_cols=36 Identities=19% Similarity=0.387 Sum_probs=27.0
Q ss_pred CcceEEEEcccccccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHCCCcee
Q 003962 253 MVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDIT 307 (783)
Q Consensus 253 m~~rI~iis~h~~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~GheV~ 307 (783)
..||++|+ +|=|..=-|...++ .++..|+++||+|+
T Consensus 5 ~~m~~Lil-----------LGCPE~Pvq~p~~l--------Yl~~~Lk~~G~~v~ 40 (157)
T 1kjn_A 5 STGKALMV-----------LGCPESPVQIPLAI--------YTSHKLKKKGFRVT 40 (157)
T ss_dssp -CCEEEEE-----------CCCSCSTTHHHHHH--------HHHHHHHHTTCEEE
T ss_pred cceeeeEE-----------ecCCCCcchhhHHH--------HHHHHHHhcCCeeE
Confidence 35888887 45566656666666 88889999999998
No 148
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=23.45 E-value=36 Score=32.89 Aligned_cols=20 Identities=15% Similarity=0.175 Sum_probs=15.9
Q ss_pred HHHHHHHHCCCceeeceeEEeCCC
Q 003962 294 EMLLRIKQQGLDITPQILIITRLL 317 (783)
Q Consensus 294 eLa~~L~~~GheV~~~i~VvT~~~ 317 (783)
.+++.|.++|++|. ++++..
T Consensus 15 ~l~~~L~~~g~~V~----~~~R~~ 34 (219)
T 3dqp_A 15 SLLKSLSTTDYQIY----AGARKV 34 (219)
T ss_dssp HHHHHHTTSSCEEE----EEESSG
T ss_pred HHHHHHHHCCCEEE----EEECCc
Confidence 55677889999998 888763
No 149
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=22.97 E-value=3.5e+02 Score=23.55 Aligned_cols=110 Identities=14% Similarity=0.185 Sum_probs=64.7
Q ss_pred CeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHc-cCcEEEeCCC-CCCCcHH
Q 003962 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICD-TKGAFVQPAL-YEAFGLT 656 (783)
Q Consensus 579 ~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~-aadvfV~PS~-~E~fGlt 656 (783)
..+++|+.+.+ .....+....+.. ..+...+. ..+..+....+.. ..|+++.-.. .+.-|+.
T Consensus 5 ~~~ILivdd~~----------~~~~~l~~~L~~~---~~~~v~~~---~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~ 68 (153)
T 3cz5_A 5 TARIMLVDDHP----------IVREGYRRLIERR---PGYAVVAE---AADAGEAYRLYRETTPDIVVMDLTLPGPGGIE 68 (153)
T ss_dssp CEEEEEECSCH----------HHHHHHHHHHTTS---TTEEEEEE---ESSHHHHHHHHHTTCCSEEEECSCCSSSCHHH
T ss_pred ccEEEEECCcH----------HHHHHHHHHHhhC---CCcEEEEE---eCCHHHHHHHHhcCCCCEEEEecCCCCCCHHH
Confidence 45777887763 2234444444431 12333211 1234556665543 2577776433 3445777
Q ss_pred HHHHHHc---CCcEEEc-Cccc---cccccccCceEEEECCCCHHHHHHHHHHHH
Q 003962 657 VVEAMTC---GLPTFAT-CKGG---PAEIIVNGKSGYHIDPYHGEQAAEILVDFF 704 (783)
Q Consensus 657 vlEAMa~---GlPVVat-~~GG---~~EiI~dg~~G~li~p~d~e~lAeaI~~~l 704 (783)
+++.+.. ++|+|.. .... ..+.+..|..|++..|.+.+++..+|..++
T Consensus 69 ~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~ 123 (153)
T 3cz5_A 69 ATRHIRQWDGAARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAIL 123 (153)
T ss_dssp HHHHHHHHCTTCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHT
T ss_pred HHHHHHHhCCCCeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHH
Confidence 7776643 6788774 3322 234456788999999999999999997665
No 150
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=22.96 E-value=47 Score=32.04 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=14.7
Q ss_pred HHHHHHH-HCCCceeeceeEEeCC
Q 003962 294 EMLLRIK-QQGLDITPQILIITRL 316 (783)
Q Consensus 294 eLa~~L~-~~GheV~~~i~VvT~~ 316 (783)
.+++.|. ++|++|. ++++.
T Consensus 20 ~~~~~l~~~~g~~V~----~~~r~ 39 (221)
T 3r6d_A 20 XLTATLLTYTDMHIT----LYGRQ 39 (221)
T ss_dssp HHHHHHHHHCCCEEE----EEESS
T ss_pred HHHHHHHhcCCceEE----EEecC
Confidence 4556777 8999998 88775
No 151
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=22.62 E-value=2.8e+02 Score=26.19 Aligned_cols=93 Identities=6% Similarity=-0.005 Sum_probs=59.1
Q ss_pred HHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHc-cCcEEEeCCCCCCCcHHHHHHHHc---CCcEEE-cCccc--
Q 003962 602 MKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICD-TKGAFVQPALYEAFGLTVVEAMTC---GLPTFA-TCKGG-- 674 (783)
Q Consensus 602 ~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~-aadvfV~PS~~E~fGltvlEAMa~---GlPVVa-t~~GG-- 674 (783)
...+....+..+. .|.... +..+....+.. ..|++++| +.-|+.+++.+.. .+|+|. |....
T Consensus 13 ~~~l~~~L~~~g~--~v~~~~------~~~~al~~l~~~~~dlvilp---~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~ 81 (223)
T 2hqr_A 13 GGEIEKGLNVKGF--MADVTE------SLEDGEYLMDIRNYDLVMVS---DKNALSFVSRIKEKHSSIVVLVSSDNPTSE 81 (223)
T ss_dssp HHHHHHHHGGGTC--CEEEES------SHHHHHHHHTTSCCSEEEEC---CTTHHHHHHHHHHHCTTSEEEEEESSCCHH
T ss_pred HHHHHHHHHHCCc--EEEEEC------CHHHHHHHHhcCCCCEEEeC---CCCHHHHHHHHHhCCCCCcEEEEECCCCHH
Confidence 4555666665543 454332 34566665543 35788744 3457777766643 788876 33332
Q ss_pred -cccccccCceEEEECCC-CHHHHHHHHHHHHH
Q 003962 675 -PAEIIVNGKSGYHIDPY-HGEQAAEILVDFFE 705 (783)
Q Consensus 675 -~~EiI~dg~~G~li~p~-d~e~lAeaI~~~l~ 705 (783)
..+.+..|..|++..|. +++++..+|..++.
T Consensus 82 ~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~ 114 (223)
T 2hqr_A 82 EEVHAFEQGADDYIAKPYRSIKALVARIEARLR 114 (223)
T ss_dssp HHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTS
T ss_pred HHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhc
Confidence 23345678899999999 99999999977663
No 152
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=22.30 E-value=87 Score=31.62 Aligned_cols=47 Identities=15% Similarity=0.084 Sum_probs=27.7
Q ss_pred cHHHHhccCC-CcceEEEEcccccccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHCCCcee
Q 003962 243 TLETFLGRIP-MVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDIT 307 (783)
Q Consensus 243 ~~~~f~~~~p-m~~rI~iis~h~~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~GheV~ 307 (783)
..+.|-...+ ++|||++|+ | .|..+|... .|++.+++.+.+.|++|+
T Consensus 22 ~~~~~~~~~~~~~mkIliI~--G---------S~r~~s~t~-------~La~~~~~~l~~~g~eve 69 (247)
T 2q62_A 22 DSASLRPAFSTHRPRILILY--G---------SLRTVSYSR-------LLAEEARRLLEFFGAEVK 69 (247)
T ss_dssp CGGGGCCCCCCSCCEEEEEE--C---------CCCSSCHHH-------HHHHHHHHHHHHTTCEEE
T ss_pred ChhhhhhhccCCCCeEEEEE--c---------cCCCCCHHH-------HHHHHHHHHHhhCCCEEE
Confidence 3444444444 357999996 2 233345433 233456667778899988
No 153
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=22.23 E-value=62 Score=30.83 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=24.7
Q ss_pred CCcceEEEEcccccccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHCCCcee
Q 003962 252 PMVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDIT 307 (783)
Q Consensus 252 pm~~rI~iis~h~~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~GheV~ 307 (783)
|..|||+|=|.|+-+. |-+.+.+.|.++||+|.
T Consensus 19 ~~~MkIaIgsDhaG~~-----------------------lK~~i~~~L~~~G~eV~ 51 (166)
T 3s5p_A 19 PGSMKVAFASDHGGRD-----------------------LRMFLQQRASAHGYEVM 51 (166)
T ss_dssp CTTCEEEEEECGGGHH-----------------------HHHHHHHHHHHTTCEEE
T ss_pred CCceEEEEEECchHHH-----------------------HHHHHHHHHHHCCCEEE
Confidence 5568999999997421 22356778899999987
No 154
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=22.22 E-value=3.5e+02 Score=22.63 Aligned_cols=106 Identities=15% Similarity=0.164 Sum_probs=65.9
Q ss_pred EEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHc-cCcEEEeCCC-CCCCcHHHH
Q 003962 581 NLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICD-TKGAFVQPAL-YEAFGLTVV 658 (783)
Q Consensus 581 ~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~-aadvfV~PS~-~E~fGltvl 658 (783)
+++|+.+.+ .....+....+..|. .|.... +..+....+.. ..|+++.-.. .+.-|+.++
T Consensus 4 ~ILivdd~~----------~~~~~l~~~l~~~g~--~v~~~~------~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~ 65 (122)
T 3gl9_A 4 KVLLVDDSA----------VLRKIVSFNLKKEGY--EVIEAE------NGQIALEKLSEFTPDLIVLXIMMPVMDGFTVL 65 (122)
T ss_dssp EEEEECSCH----------HHHHHHHHHHHHTTC--EEEEES------SHHHHHHHHTTBCCSEEEECSCCSSSCHHHHH
T ss_pred eEEEEeCCH----------HHHHHHHHHHHHCCc--EEEEeC------CHHHHHHHHHhcCCCEEEEeccCCCCcHHHHH
Confidence 566676653 233455566666553 344332 34566666643 3577776432 345678888
Q ss_pred HHHH-----cCCcEEE-cCcccc---ccccccCceEEEECCCCHHHHHHHHHHHH
Q 003962 659 EAMT-----CGLPTFA-TCKGGP---AEIIVNGKSGYHIDPYHGEQAAEILVDFF 704 (783)
Q Consensus 659 EAMa-----~GlPVVa-t~~GG~---~EiI~dg~~G~li~p~d~e~lAeaI~~~l 704 (783)
+.+. ..+|+|. |..+.. .+....|..+|+..|.+++++.++|..++
T Consensus 66 ~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l 120 (122)
T 3gl9_A 66 KKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLL 120 (122)
T ss_dssp HHHHTSTTTTTSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHhcccccCCCEEEEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHh
Confidence 8874 3578876 443332 33446788999999999999999996654
No 155
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=22.11 E-value=85 Score=24.21 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=17.3
Q ss_pred cCCCCCCchHHHHHhhhcCc
Q 003962 195 TVVPETPFSELALRFQEIGL 214 (783)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~ 214 (783)
..++++=|..-...|++|||
T Consensus 2 ~~~~ee~~a~~L~~L~eMGF 21 (54)
T 2cp8_A 2 SSGSSGQTAALMAHLFEMGF 21 (54)
T ss_dssp CCSSCTTHHHHHHHHHHHTC
T ss_pred CCCHHHhhHHHHHHHHHcCC
Confidence 45788889988889999999
No 156
>1xv5_A AGT, DNA alpha-glucosyltransferase; HET: DNA CME UDP; 1.73A {Enterobacteria phage T4} PDB: 1y6f_A* 1y6g_A* 1ya6_A* 1y8z_A*
Probab=21.95 E-value=5.8e+02 Score=25.11 Aligned_cols=164 Identities=16% Similarity=0.200 Sum_probs=103.4
Q ss_pred EEEEEecccCCCCHHHHHHHHHHhHccCCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCC-----
Q 003962 550 ILFTMARLDRVKNLTGLVEWYGKNAKLRELVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQ----- 624 (783)
Q Consensus 550 iIl~vGRL~~~Kgl~~LieA~~~l~~~~~~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~----- 624 (783)
+=-++||-...||+-.+.+.-.++.+-. .-.-|+-|-... .. .-.+++-|++ ..+.|.+
T Consensus 199 inrwigrtttwkgfyqmfdfhekflkpa-gkstvmeglers------------pa-fiaikekgip--yeyygnreidkm 262 (401)
T 1xv5_A 199 INRWIGRTTTWKGFYQMFDFHEKFLKPA-GKSTVMEGLERS------------PA-FIAIKEKGIP--YEYYGNREIDKM 262 (401)
T ss_dssp EEEEECCSCGGGCHHHHHHHHHHTTTTT-TCEEEEECCCCS------------HH-HHHHHHTTCC--EEEECGGGGGGC
T ss_pred hhhhhcccchhHhHHHHhhHHHHhcCcc-chhhhhhhhhcC------------Cc-eEEEcccCCc--hhhcCcchhhhh
Confidence 4568999999999999999888876522 123344443221 11 1123333331 2222210
Q ss_pred ----------CCcCChHHHHHHHHccCcEEEeCCC------CCCCcHHHHHHHHcCC-cEEEcCcccccccc------cc
Q 003962 625 ----------MNRVRNGELYRYICDTKGAFVQPAL------YEAFGLTVVEAMTCGL-PTFATCKGGPAEII------VN 681 (783)
Q Consensus 625 ----------~~~~~~~el~~~ia~aadvfV~PS~------~E~fGltvlEAMa~Gl-PVVat~~GG~~EiI------~d 681 (783)
.+-.-+.|+..-+.. ++..-+-|. --....+-+|--|||+ ||+--..|.....- ..
T Consensus 263 nlapnqpaqildcyinsemlermsk-sgfgyqlsklnqkylqrsleythlelgacgtipvfwkstgenlkfrvdntplts 341 (401)
T 1xv5_A 263 NLAPNQPAQILDCYINSEMLERMSK-SGFGYQLSKLNQKYLQRSLEYTHLELGACGTIPVFWKSTGENLKFRVDNTPLTS 341 (401)
T ss_dssp CCSSSCCEEEESCCCHHHHHHHHHT-EEEEEECCCCCGGGCSSCCCHHHHHHHHHTSEEEEEHHHHHHSBCTTTCCBGGG
T ss_pred cCCCCCcchhhhheecHHHHHHhhh-cCcccchHHHHHHHHHhhhhhheeecccccceeeeecccCcceEEEecCCcccc
Confidence 013446788888886 778777764 2346778999999997 66655555433221 11
Q ss_pred CceE-EEECCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhCCHHHH
Q 003962 682 GKSG-YHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIY 734 (783)
Q Consensus 682 g~~G-~li~p~d~e~lAeaI~~~l~~l~~dp~~~~~ms~~a~~~v~~~ysw~~~ 734 (783)
..+| +.++.+|.++.-+.|.++ ..|..+..+-.+.|.+...++-+-.-.
T Consensus 342 hdsgiiwfdendmestferikel----ssdralydrerekayeflyqhqdssfc 391 (401)
T 1xv5_A 342 HDSGIIWFDENDMESTFERIKEL----SSDRALYDREREKAYEFLYQHQDSSFC 391 (401)
T ss_dssp SCCSCEEECTTCHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHHBHHHH
T ss_pred cCCceEEecCCchHHHHHHHHHh----ccchhhhhHHHHHHHHHHHhcccccch
Confidence 2345 568999999999999655 489999988888888877665544433
No 157
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=21.82 E-value=2.9e+02 Score=25.34 Aligned_cols=108 Identities=11% Similarity=0.092 Sum_probs=68.5
Q ss_pred CeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHHc-cCcEEEeCCC-CCCCcHH
Q 003962 579 LVNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICD-TKGAFVQPAL-YEAFGLT 656 (783)
Q Consensus 579 ~~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia~-aadvfV~PS~-~E~fGlt 656 (783)
..+++||.+.+ .....+....+..|. .|.... +..+....+.. ..|++++-.. -+.-|+.
T Consensus 7 ~~~iLivdd~~----------~~~~~l~~~L~~~g~--~v~~~~------~~~~al~~~~~~~~dlvl~D~~lp~~~g~~ 68 (184)
T 3rqi_A 7 DKNFLVIDDNE----------VFAGTLARGLERRGY--AVRQAH------NKDEALKLAGAEKFEFITVXLHLGNDSGLS 68 (184)
T ss_dssp CCEEEEECSCH----------HHHHHHHHHHHHTTC--EEEEEC------SHHHHHHHHTTSCCSEEEECSEETTEESHH
T ss_pred CCeEEEEcCCH----------HHHHHHHHHHHHCCC--EEEEeC------CHHHHHHHHhhCCCCEEEEeccCCCccHHH
Confidence 35778887764 234556666666553 343332 34566666643 2477776332 3446777
Q ss_pred HHHHHHc---CCcEEE-cCccc---cccccccCceEEEECCCCHHHHHHHHHHHH
Q 003962 657 VVEAMTC---GLPTFA-TCKGG---PAEIIVNGKSGYHIDPYHGEQAAEILVDFF 704 (783)
Q Consensus 657 vlEAMa~---GlPVVa-t~~GG---~~EiI~dg~~G~li~p~d~e~lAeaI~~~l 704 (783)
+++.+.. .+|||. |.... ..+.+..|..||+..|.+++++..+|..++
T Consensus 69 ~~~~l~~~~~~~~ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~ 123 (184)
T 3rqi_A 69 LIAPLCDLQPDARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNA 123 (184)
T ss_dssp HHHHHHHHCTTCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTH
T ss_pred HHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHH
Confidence 7776643 678876 44333 334556788999999999999999996554
No 158
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=21.68 E-value=3.5e+02 Score=22.50 Aligned_cols=106 Identities=13% Similarity=0.098 Sum_probs=66.8
Q ss_pred eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCCcEEEccCCCCcCChHHHHHHHH-ccCcEEEeCC-CCCCCcHHH
Q 003962 580 VNLVVVGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYIC-DTKGAFVQPA-LYEAFGLTV 657 (783)
Q Consensus 580 ~~LvIVG~g~~~~~~~~ee~~~~~~l~~li~~~~L~~~V~flG~~~~~~~~~el~~~ia-~aadvfV~PS-~~E~fGltv 657 (783)
.+++|+.+.+ ...+.+....+..|. .|.... +..+....+. ...|+++.-. ..+.-|+.+
T Consensus 4 ~~ilivdd~~----------~~~~~l~~~L~~~g~--~v~~~~------~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~ 65 (127)
T 3i42_A 4 QQALIVEDYQ----------AAAETFKELLEMLGF--QADYVM------SGTDALHAMSTRGYDAVFIDLNLPDTSGLAL 65 (127)
T ss_dssp EEEEEECSCH----------HHHHHHHHHHHHTTE--EEEEES------SHHHHHHHHHHSCCSEEEEESBCSSSBHHHH
T ss_pred ceEEEEcCCH----------HHHHHHHHHHHHcCC--CEEEEC------CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 5677777763 334566667776654 444432 3455555554 2356666633 345567888
Q ss_pred HHHHHc-----CCcEEEc-Ccccc--ccccccCceEEEECCCCHHHHHHHHHHH
Q 003962 658 VEAMTC-----GLPTFAT-CKGGP--AEIIVNGKSGYHIDPYHGEQAAEILVDF 703 (783)
Q Consensus 658 lEAMa~-----GlPVVat-~~GG~--~EiI~dg~~G~li~p~d~e~lAeaI~~~ 703 (783)
++.+.. .+|+|.. ..... .+.+..|..+++..|.+.+++.+++...
T Consensus 66 ~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~ 119 (127)
T 3i42_A 66 VKQLRALPMEKTSKFVAVSGFAKNDLGKEACELFDFYLEKPIDIASLEPILQSI 119 (127)
T ss_dssp HHHHHHSCCSSCCEEEEEECC-CTTCCHHHHHHCSEEEESSCCHHHHHHHHHHH
T ss_pred HHHHHhhhccCCCCEEEEECCcchhHHHHHHHhhHHheeCCCCHHHHHHHHHHh
Confidence 777753 4788773 32222 3445667889999999999999999654
No 159
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=21.45 E-value=58 Score=30.93 Aligned_cols=30 Identities=20% Similarity=0.364 Sum_probs=22.9
Q ss_pred ceEEEEcccccccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHCCCcee
Q 003962 255 FNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDIT 307 (783)
Q Consensus 255 ~rI~iis~h~~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~GheV~ 307 (783)
|||+|-|.|+-+ .|-+.+.+.|.++||+|.
T Consensus 4 MkIaigsDhaG~-----------------------~lK~~i~~~L~~~G~eV~ 33 (162)
T 2vvp_A 4 MRVYLGADHAGY-----------------------ELKQRIIEHLKQTGHEPI 33 (162)
T ss_dssp CEEEEEECHHHH-----------------------HHHHHHHHHHHHTTCEEE
T ss_pred CEEEEEeCchhH-----------------------HHHHHHHHHHHHCCCEEE
Confidence 799999999732 123357778999999987
No 160
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=21.28 E-value=55 Score=27.69 Aligned_cols=19 Identities=11% Similarity=0.134 Sum_probs=14.0
Q ss_pred HHHHHHHHCC-CceeeceeEEeCC
Q 003962 294 EMLLRIKQQG-LDITPQILIITRL 316 (783)
Q Consensus 294 eLa~~L~~~G-heV~~~i~VvT~~ 316 (783)
.+++.|.+.| ++|. ++.+.
T Consensus 19 ~~~~~l~~~g~~~v~----~~~r~ 38 (118)
T 3ic5_A 19 MIAALLKTSSNYSVT----VADHD 38 (118)
T ss_dssp HHHHHHHHCSSEEEE----EEESC
T ss_pred HHHHHHHhCCCceEE----EEeCC
Confidence 4566788899 8887 77664
No 161
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=21.15 E-value=1.1e+02 Score=30.36 Aligned_cols=40 Identities=20% Similarity=0.270 Sum_probs=23.6
Q ss_pred cceEEEEcccccccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHCCCcee
Q 003962 254 VFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDIT 307 (783)
Q Consensus 254 ~~rI~iis~h~~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~GheV~ 307 (783)
+|||++|.-|-.+. ...|+.. ++|.+.+++.+.+.|++|+
T Consensus 25 M~kiLiI~gsp~~~-------~s~~s~n-------~~L~~~~~~~l~~~g~ev~ 64 (218)
T 3rpe_A 25 MSNVLIINAMKEFA-------HSKGALN-------LTLTNVAADFLRESGHQVK 64 (218)
T ss_dssp CCCEEEEECCCCBT-------TBCSHHH-------HHHHHHHHHHHHHTTCCEE
T ss_pred CcceEEEEeCCCcc-------cCCChHH-------HHHHHHHHHHHhhCCCEEE
Confidence 47999997553210 0012222 3344466677888999998
No 162
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=21.13 E-value=46 Score=32.61 Aligned_cols=69 Identities=17% Similarity=0.230 Sum_probs=40.7
Q ss_pred HHHHHHHHccCcEEEeCCCCCCCcH--HHHHHHHcCCcEEEcCccc-ccccc----ccC------c-eEEEECCCCHHHH
Q 003962 631 GELYRYICDTKGAFVQPALYEAFGL--TVVEAMTCGLPTFATCKGG-PAEII----VNG------K-SGYHIDPYHGEQA 696 (783)
Q Consensus 631 ~el~~~ia~aadvfV~PS~~E~fGl--tvlEAMa~GlPVVat~~GG-~~EiI----~dg------~-~G~li~p~d~e~l 696 (783)
.+--+.+...+|++|.-. -++|. .+.||+..|+||++-+..| ..+.+ .+| . .-+.+ ..|++++
T Consensus 109 ~~Rk~~m~~~sda~Ivlp--GG~GTL~E~~eal~~~kPV~lln~~g~w~~~l~~~~~~G~fi~~~~~~~i~~-~~~~ee~ 185 (195)
T 1rcu_A 109 QMRSFVLLRNADVVVSIG--GEIGTAIEILGAYALGKPVILLRGTGGWTDRISQVLIDGKYLDNRRIVEIHQ-AWTVEEA 185 (195)
T ss_dssp HHHHHHHHTTCSEEEEES--CCHHHHHHHHHHHHTTCCEEEETTSCHHHHHGGGGCBTTTBSSTTCCSCEEE-ESSHHHH
T ss_pred HHHHHHHHHhCCEEEEec--CCCcHHHHHHHHHhcCCCEEEECCCCccHHHHHHHHHcCCcCCHHHcCeEEE-eCCHHHH
Confidence 344455655677776531 34664 4789999999999986433 33222 221 1 12333 3488988
Q ss_pred HHHHHH
Q 003962 697 AEILVD 702 (783)
Q Consensus 697 AeaI~~ 702 (783)
.+.|.+
T Consensus 186 ~~~l~~ 191 (195)
T 1rcu_A 186 VQIIEQ 191 (195)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 887743
No 163
>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2
Probab=21.12 E-value=52 Score=34.61 Aligned_cols=20 Identities=15% Similarity=0.149 Sum_probs=15.4
Q ss_pred HHHHHHHHCCCceeeceeEEeCCC
Q 003962 294 EMLLRIKQQGLDITPQILIITRLL 317 (783)
Q Consensus 294 eLa~~L~~~GheV~~~i~VvT~~~ 317 (783)
.+++.|.++|++|. ++++..
T Consensus 39 ~l~~~L~~~g~~V~----~~~r~~ 58 (375)
T 1t2a_A 39 YLAEFLLEKGYEVH----GIVRRS 58 (375)
T ss_dssp HHHHHHHHTTCEEE----EEECCC
T ss_pred HHHHHHHHCCCEEE----EEECCc
Confidence 45577888999998 887753
No 164
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=21.03 E-value=4e+02 Score=22.90 Aligned_cols=75 Identities=8% Similarity=0.003 Sum_probs=45.9
Q ss_pred hHHHHHHHHc-cCcEEEeCCC-CCCCcHHHHHHHH---cCCcEEEc-Cccc---cccccccCceEEEECCCCHHHHHHHH
Q 003962 630 NGELYRYICD-TKGAFVQPAL-YEAFGLTVVEAMT---CGLPTFAT-CKGG---PAEIIVNGKSGYHIDPYHGEQAAEIL 700 (783)
Q Consensus 630 ~~el~~~ia~-aadvfV~PS~-~E~fGltvlEAMa---~GlPVVat-~~GG---~~EiI~dg~~G~li~p~d~e~lAeaI 700 (783)
..+....+.. ..|+++.-.. .+.-|+.+++.+. .++|+|.. .... ..+.+..|..+++..|.+.+++.++|
T Consensus 38 ~~~al~~~~~~~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i 117 (141)
T 3cu5_A 38 GINAIQIALKHPPNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDAL 117 (141)
T ss_dssp HHHHHHHHTTSCCSEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEECCSTTTCCC------CCCEEECSSCCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHH
Confidence 4555665543 2577776332 3445777777664 46787763 3332 34445678899999999999999999
Q ss_pred HHHH
Q 003962 701 VDFF 704 (783)
Q Consensus 701 ~~~l 704 (783)
..++
T Consensus 118 ~~~~ 121 (141)
T 3cu5_A 118 KQSI 121 (141)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
No 165
>4h62_K Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=21.03 E-value=68 Score=22.06 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=19.7
Q ss_pred cCCCCcHHHHHHHHHHHHHhhcC
Q 003962 216 RGWGDTAERALEMIQLLLDLLEA 238 (783)
Q Consensus 216 ~~~~~~~~r~~~~~~~~~~~~~~ 238 (783)
+..|.+.+++.|.+.+|+.++++
T Consensus 10 kalgqdtekmeeqldllsaildp 32 (40)
T 4h62_K 10 KALGQDTEKMEEQLDLLSAILDP 32 (40)
T ss_pred HhhcccHHHHHHHHHHHHHHcCc
Confidence 44688999999999999999864
No 166
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=20.93 E-value=1.3e+02 Score=26.12 Aligned_cols=35 Identities=14% Similarity=0.324 Sum_probs=23.5
Q ss_pred CCcceEEEEcccccccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHCCCcee
Q 003962 252 PMVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDIT 307 (783)
Q Consensus 252 pm~~rI~iis~h~~~~~~~~lg~p~tGG~~vyv~d~araL~~eLa~~L~~~GheV~ 307 (783)
|..|||+++|..|. |..... +.|-+.+.+.|+++.
T Consensus 2 ~~~mkIlvvC~~G~-------------~TSll~--------~kl~~~~~~~gi~~~ 36 (109)
T 2l2q_A 2 PGSMNILLVCGAGM-------------STSMLV--------QRIEKYAKSKNINAT 36 (109)
T ss_dssp CCCEEEEEESSSSC-------------SSCHHH--------HHHHHHHHHHTCSEE
T ss_pred CCceEEEEECCChH-------------hHHHHH--------HHHHHHHHHCCCCeE
Confidence 44589999998775 222222 256667888999877
No 167
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=20.07 E-value=4.7e+02 Score=27.30 Aligned_cols=18 Identities=17% Similarity=0.521 Sum_probs=13.9
Q ss_pred HHHHHHHHCCCceeeceeEEeC
Q 003962 294 EMLLRIKQQGLDITPQILIITR 315 (783)
Q Consensus 294 eLa~~L~~~GheV~~~i~VvT~ 315 (783)
++++++++.|++|. ++..
T Consensus 25 ~~~~a~~~~G~~v~----~~~~ 42 (391)
T 1kjq_A 25 EVAIECQRLGVEVI----AVDR 42 (391)
T ss_dssp HHHHHHHTTTCEEE----EEES
T ss_pred HHHHHHHHcCCEEE----EEEC
Confidence 56777899999887 6654
Done!