Query 003964
Match_columns 783
No_of_seqs 526 out of 2008
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 09:45:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003964.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003964hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b7f_A Protein (SXL-lethal pro 99.7 2.4E-16 8.1E-21 148.4 19.8 79 624-706 90-168 (168)
2 3md3_A Nuclear and cytoplasmic 99.7 1.3E-15 4.6E-20 142.3 19.0 78 624-707 88-165 (166)
3 2g4b_A Splicing factor U2AF 65 99.7 2.9E-15 1E-19 141.7 17.6 78 623-706 94-171 (172)
4 3pgw_A U1-A; protein-RNA compl 99.6 6.8E-14 2.3E-18 143.8 27.6 76 191-266 6-91 (282)
5 2ghp_A U4/U6 snRNA-associated 99.6 6.9E-15 2.4E-19 151.9 17.1 99 190-292 37-142 (292)
6 3smz_A Protein raver-1, ribonu 99.6 1.5E-14 5E-19 148.9 18.3 96 193-292 21-120 (284)
7 4fxv_A ELAV-like protein 1; RN 99.6 3.9E-15 1.3E-19 133.0 9.9 72 193-264 18-98 (99)
8 2yh0_A Splicing factor U2AF 65 99.6 7.4E-14 2.5E-18 135.0 18.6 82 623-710 114-195 (198)
9 3s8s_A Histone-lysine N-methyl 99.6 4.2E-15 1.4E-19 135.5 8.9 79 191-269 3-90 (110)
10 4f25_A Polyadenylate-binding p 99.5 3E-14 1E-18 129.8 9.7 76 194-269 5-87 (115)
11 1x4a_A Splicing factor, argini 99.5 1.5E-13 5E-18 123.1 12.9 78 191-268 19-102 (109)
12 2cpz_A CUG triplet repeat RNA- 99.5 8.4E-14 2.9E-18 125.9 11.3 80 189-268 20-108 (115)
13 4f02_A Polyadenylate-binding p 99.5 1.5E-15 5E-20 151.5 -0.5 158 101-268 20-184 (213)
14 2do4_A Squamous cell carcinoma 99.5 1E-13 3.6E-18 122.1 11.5 77 191-267 14-98 (100)
15 1x5u_A Splicing factor 3B subu 99.5 1.3E-13 4.3E-18 122.4 11.6 79 190-268 11-98 (105)
16 2dnz_A Probable RNA-binding pr 99.5 9.8E-14 3.3E-18 120.7 10.4 77 192-268 3-88 (95)
17 1fxl_A Paraneoplastic encephal 99.5 1.4E-13 4.7E-18 128.8 12.0 100 194-293 2-114 (167)
18 4f02_A Polyadenylate-binding p 99.5 1.1E-13 3.7E-18 137.9 11.9 103 192-294 13-130 (213)
19 2x1f_A MRNA 3'-END-processing 99.5 1.2E-13 4E-18 121.1 10.5 75 193-267 1-84 (96)
20 3lqv_A PRE-mRNA branch site pr 99.5 5.3E-14 1.8E-18 127.0 8.5 99 192-294 6-110 (115)
21 1whw_A Hypothetical protein ri 99.5 1.4E-13 4.6E-18 120.9 10.9 77 192-268 6-91 (99)
22 3md1_A Nuclear and cytoplasmic 99.5 1.1E-13 3.8E-18 117.3 9.9 73 194-266 1-82 (83)
23 3bs9_A Nucleolysin TIA-1 isofo 99.5 9.2E-14 3.1E-18 118.8 9.3 74 192-265 4-86 (87)
24 2e5h_A Zinc finger CCHC-type a 99.5 1.8E-13 6.3E-18 118.8 11.2 73 191-263 13-94 (94)
25 2dgs_A DAZ-associated protein 99.5 1.7E-13 5.7E-18 120.6 10.8 77 191-268 7-92 (99)
26 2dgo_A Cytotoxic granule-assoc 99.5 3.1E-13 1.1E-17 121.9 12.7 78 191-268 12-98 (115)
27 2cqi_A Nucleolysin TIAR; RNA r 99.5 2.1E-13 7.3E-18 120.7 11.3 80 190-269 11-97 (103)
28 2dnm_A SRP46 splicing factor; 99.5 1.3E-13 4.3E-18 122.2 9.7 78 191-268 10-96 (103)
29 2cq0_A Eukaryotic translation 99.5 1.4E-13 4.7E-18 121.9 9.9 78 191-268 12-98 (103)
30 1why_A Hypothetical protein ri 99.5 2.6E-13 8.7E-18 119.1 11.5 76 192-267 15-95 (97)
31 2cqb_A Peptidyl-prolyl CIS-tra 99.5 1.4E-13 4.8E-18 121.4 9.9 78 192-269 10-96 (102)
32 3mdf_A Peptidyl-prolyl CIS-tra 99.5 1.6E-13 5.4E-18 116.8 9.8 72 192-263 5-85 (85)
33 1wex_A Hypothetical protein (r 99.5 1.3E-13 4.6E-18 124.9 9.9 80 189-268 10-94 (104)
34 2lxi_A RNA-binding protein 10; 99.5 4.5E-14 1.5E-18 123.9 6.6 75 194-268 1-86 (91)
35 2dgv_A HnRNP M, heterogeneous 99.5 1.2E-13 4E-18 119.5 9.1 78 191-268 5-89 (92)
36 1oo0_B CG8781-PA, drosophila Y 99.5 1.4E-13 4.7E-18 123.3 9.8 78 191-268 23-109 (110)
37 2dnh_A Bruno-like 5, RNA bindi 99.5 2.2E-13 7.4E-18 120.9 10.9 78 192-269 13-101 (105)
38 1sjq_A Polypyrimidine tract-bi 99.5 9.3E-14 3.2E-18 127.0 8.5 79 191-269 13-96 (105)
39 2d9p_A Polyadenylate-binding p 99.5 1.8E-13 6.2E-18 121.2 10.1 79 191-269 12-97 (103)
40 2cq3_A RNA-binding protein 9; 99.5 4.2E-13 1.4E-17 118.8 12.5 79 190-268 11-96 (103)
41 1x4h_A RNA-binding protein 28; 99.5 2.8E-13 9.7E-18 121.0 11.2 79 191-269 12-105 (111)
42 1x5t_A Splicing factor 3B subu 99.5 1.1E-13 3.9E-18 120.5 8.4 77 192-268 3-89 (96)
43 2cpf_A RNA binding motif prote 99.5 1.5E-13 5.1E-18 120.4 9.1 77 192-268 3-91 (98)
44 2cqc_A Arginine/serine-rich sp 99.5 2.2E-13 7.4E-18 118.3 10.1 74 191-264 12-94 (95)
45 2cph_A RNA binding motif prote 99.5 2.9E-13 1E-17 120.2 11.0 78 191-268 12-100 (107)
46 2dgt_A RNA-binding protein 30; 99.5 2.3E-13 7.8E-18 118.4 10.1 77 191-268 7-85 (92)
47 1p27_B RNA-binding protein 8A; 99.5 1.4E-13 4.7E-18 122.4 8.9 77 191-267 20-105 (106)
48 2ywk_A Putative RNA-binding pr 99.5 1.5E-13 5.2E-18 119.5 9.0 75 190-264 12-94 (95)
49 2cq1_A PTB-like protein L; RRM 99.5 3.5E-13 1.2E-17 121.6 11.5 80 190-269 11-95 (101)
50 3r27_A HnRNP L, heterogeneous 99.5 1.7E-13 5.9E-18 124.3 9.4 76 191-266 18-98 (100)
51 1x5s_A Cold-inducible RNA-bind 99.4 1.8E-13 6E-18 120.8 9.1 77 192-268 10-95 (102)
52 2dgp_A Bruno-like 4, RNA bindi 99.4 2.1E-13 7E-18 121.2 9.3 78 191-268 10-99 (106)
53 2dnq_A RNA-binding protein 4B; 99.4 2.5E-13 8.5E-18 117.7 9.6 76 192-268 6-83 (90)
54 2cjk_A Nuclear polyadenylated 99.4 2.1E-14 7.3E-19 135.1 2.9 150 101-265 8-166 (167)
55 1fjc_A Nucleolin RBD2, protein 99.4 1.2E-13 4.1E-18 120.6 7.3 78 191-268 13-94 (96)
56 2fc9_A NCL protein; structure 99.4 3.7E-13 1.3E-17 118.7 10.5 78 191-268 12-94 (101)
57 2dgx_A KIAA0430 protein; RRM d 99.4 3.9E-13 1.3E-17 118.4 10.2 75 193-267 8-92 (96)
58 2e5j_A Methenyltetrahydrofolat 99.4 2.7E-13 9.2E-18 119.2 9.1 76 191-267 16-96 (97)
59 4a8x_A RNA-binding protein wit 99.4 3E-13 1E-17 115.6 9.1 75 193-267 3-87 (88)
60 3tyt_A Heterogeneous nuclear r 99.4 3.9E-13 1.3E-17 134.7 11.4 102 193-294 3-150 (205)
61 2do0_A HnRNP M, heterogeneous 99.4 7.5E-13 2.6E-17 119.0 12.1 78 191-268 12-97 (114)
62 1wi8_A EIF-4B, eukaryotic tran 99.4 5.1E-13 1.7E-17 118.7 10.8 77 190-268 11-97 (104)
63 2jrs_A RNA-binding protein 39; 99.4 3.2E-13 1.1E-17 122.0 9.6 78 189-266 21-107 (108)
64 2cpe_A RNA-binding protein EWS 99.4 4E-13 1.4E-17 120.8 10.2 79 190-268 11-106 (113)
65 2dgu_A Heterogeneous nuclear r 99.4 6.1E-13 2.1E-17 118.2 11.2 77 192-269 9-87 (103)
66 1u6f_A Tcubp1, RNA-binding pro 99.4 3.5E-13 1.2E-17 125.5 10.1 80 190-269 38-126 (139)
67 2a3j_A U1 small nuclear ribonu 99.4 2.5E-13 8.5E-18 127.4 9.1 78 191-268 26-113 (127)
68 2la6_A RNA-binding protein FUS 99.4 3.6E-13 1.2E-17 118.6 9.5 74 190-263 9-99 (99)
69 1l3k_A Heterogeneous nuclear r 99.4 5.2E-14 1.8E-18 135.8 4.5 167 93-268 9-186 (196)
70 1x4c_A Splicing factor, argini 99.4 6.3E-13 2.2E-17 119.4 11.2 78 191-268 12-96 (108)
71 2khc_A Testis-specific RNP-typ 99.4 3.2E-13 1.1E-17 122.4 9.3 75 189-263 35-118 (118)
72 2ad9_A Polypyrimidine tract-bi 99.4 2.5E-13 8.6E-18 126.6 8.6 82 188-269 25-111 (119)
73 2kxn_B Transformer-2 protein h 99.4 2.6E-13 9E-18 126.7 8.7 78 190-267 42-128 (129)
74 2dnp_A RNA-binding protein 14; 99.4 6.4E-13 2.2E-17 115.1 10.2 76 192-268 7-84 (90)
75 2cqh_A IGF-II mRNA-binding pro 99.4 2.4E-13 8.1E-18 118.3 7.5 77 192-268 6-86 (93)
76 1nu4_A U1A RNA binding domain; 99.4 2.8E-13 9.5E-18 118.3 8.0 77 191-267 5-91 (97)
77 3ex7_B RNA-binding protein 8A; 99.4 4.3E-13 1.5E-17 122.9 9.6 78 191-268 19-105 (126)
78 2dng_A Eukaryotic translation 99.4 7E-13 2.4E-17 117.6 10.5 76 191-268 12-96 (103)
79 2jvr_A Nucleolar protein 3; RN 99.4 3.2E-13 1.1E-17 124.1 8.5 75 192-266 26-106 (111)
80 2cqd_A RNA-binding region cont 99.4 9.1E-13 3.1E-17 119.2 11.4 77 190-267 13-98 (116)
81 1x4g_A Nucleolysin TIAR; struc 99.4 6.1E-13 2.1E-17 119.3 10.1 78 191-268 22-102 (109)
82 3md3_A Nuclear and cytoplasmic 99.4 7.9E-14 2.7E-18 130.3 4.3 153 101-264 5-166 (166)
83 2qfj_A FBP-interacting repress 99.4 2E-13 6.8E-18 133.7 7.4 161 101-266 33-206 (216)
84 1l3k_A Heterogeneous nuclear r 99.4 6.1E-13 2.1E-17 128.3 10.6 103 191-294 10-131 (196)
85 1x4d_A Matrin 3; structural ge 99.4 2.7E-13 9.2E-18 123.0 7.6 75 192-266 13-93 (102)
86 2ytc_A PRE-mRNA-splicing facto 99.4 4.6E-13 1.6E-17 114.2 8.6 73 191-263 9-85 (85)
87 3ulh_A THO complex subunit 4; 99.4 6.6E-13 2.3E-17 118.1 10.0 73 191-263 26-106 (107)
88 2fy1_A RNA-binding motif prote 99.4 5.1E-13 1.7E-17 122.2 9.5 76 192-267 5-88 (116)
89 1fje_B Nucleolin RBD12, protei 99.4 6.3E-14 2.2E-18 133.4 3.6 153 101-265 18-174 (175)
90 2div_A TRNA selenocysteine ass 99.4 3.8E-13 1.3E-17 118.1 8.2 75 192-266 7-95 (99)
91 2err_A Ataxin-2-binding protei 99.4 4.4E-13 1.5E-17 121.0 8.8 77 189-265 24-107 (109)
92 2dhg_A TRNA selenocysteine ass 99.4 4.9E-13 1.7E-17 118.4 8.8 78 192-269 7-94 (104)
93 3smz_A Protein raver-1, ribonu 99.4 3.8E-13 1.3E-17 138.4 9.2 169 101-294 27-212 (284)
94 2la4_A Nuclear and cytoplasmic 99.4 3.4E-13 1.2E-17 119.0 7.7 74 192-265 25-101 (101)
95 2cpj_A Non-POU domain-containi 99.4 6.7E-13 2.3E-17 116.9 9.5 76 192-267 13-91 (99)
96 2cpx_A Hypothetical protein FL 99.4 6.8E-13 2.3E-17 119.5 9.7 78 191-268 22-108 (115)
97 3ns6_A Eukaryotic translation 99.4 1.2E-13 4.1E-18 122.9 4.7 74 193-266 5-94 (100)
98 2jvo_A Nucleolar protein 3; nu 99.4 4.8E-13 1.6E-17 121.0 8.7 80 188-268 25-106 (108)
99 2fc8_A NCL protein; structure 99.4 8.7E-13 3E-17 116.4 10.1 78 191-268 12-95 (102)
100 3p5t_L Cleavage and polyadenyl 99.4 1.4E-13 4.9E-18 119.6 5.0 72 195-266 2-84 (90)
101 2xnq_A Nuclear polyadenylated 99.4 1E-12 3.5E-17 116.4 10.5 76 190-266 18-96 (97)
102 2cpd_A Apobec-1 stimulating pr 99.4 1.6E-12 5.4E-17 114.5 11.6 76 191-267 12-91 (99)
103 2cqp_A RNA-binding protein 12; 99.4 4.7E-13 1.6E-17 117.3 8.2 75 191-265 12-95 (98)
104 1p1t_A Cleavage stimulation fa 99.4 1.3E-13 4.3E-18 121.9 4.4 78 191-268 5-91 (104)
105 2lkz_A RNA-binding protein 5; 99.4 3.5E-13 1.2E-17 120.2 7.1 73 192-264 7-94 (95)
106 2ek1_A RNA-binding protein 12; 99.4 2.6E-13 9E-18 118.0 6.1 74 191-264 12-94 (95)
107 1h2v_Z 20 kDa nuclear CAP bind 99.4 1.1E-12 3.8E-17 124.7 11.0 79 191-269 36-123 (156)
108 2dh8_A DAZ-associated protein 99.4 5.2E-13 1.8E-17 118.6 8.0 78 190-268 12-98 (105)
109 2m2b_A RNA-binding protein 10; 99.4 3.5E-13 1.2E-17 125.3 6.8 77 189-266 18-109 (131)
110 2nlw_A Eukaryotic translation 99.4 9.1E-13 3.1E-17 118.0 9.2 76 191-266 12-101 (105)
111 1b7f_A Protein (SXL-lethal pro 99.4 2.3E-13 7.9E-18 127.9 5.5 147 101-262 8-168 (168)
112 3ucg_A Polyadenylate-binding p 99.4 1E-12 3.5E-17 112.7 8.7 71 194-265 6-85 (89)
113 3nmr_A Cugbp ELAV-like family 99.4 2E-13 6.9E-18 128.9 4.5 152 101-263 8-175 (175)
114 1whx_A Hypothetical protein ri 99.4 6.5E-13 2.2E-17 120.6 7.5 74 193-266 9-85 (111)
115 2yh0_A Splicing factor U2AF 65 99.4 6.1E-13 2.1E-17 128.6 7.7 76 192-267 112-196 (198)
116 2rs2_A Musashi-1, RNA-binding 99.4 1.3E-12 4.3E-17 118.1 9.2 78 190-268 21-107 (109)
117 2kn4_A Immunoglobulin G-bindin 99.4 1.6E-12 5.6E-17 123.3 10.4 78 191-268 67-153 (158)
118 1x5p_A Negative elongation fac 99.4 3.5E-12 1.2E-16 112.1 11.7 75 191-268 12-90 (97)
119 2qfj_A FBP-interacting repress 99.4 1.7E-12 5.9E-17 127.0 10.7 102 192-293 26-151 (216)
120 2cpi_A CCR4-NOT transcription 99.4 1.1E-12 3.8E-17 118.6 8.6 75 192-266 13-102 (111)
121 1wf1_A RNA-binding protein RAL 99.4 1.2E-12 4E-17 117.7 8.7 76 191-267 24-102 (110)
122 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 2.6E-12 8.7E-17 118.9 11.2 72 191-262 60-140 (140)
123 2dis_A Unnamed protein product 99.4 1.6E-12 5.4E-17 116.0 9.5 76 192-267 6-94 (109)
124 2kvi_A Nuclear polyadenylated 99.4 6.2E-13 2.1E-17 116.9 6.7 76 191-267 7-85 (96)
125 2cq4_A RNA binding motif prote 99.4 4.8E-13 1.7E-17 120.7 6.1 75 192-267 23-106 (114)
126 2lea_A Serine/arginine-rich sp 99.4 5.8E-13 2E-17 125.2 6.9 78 191-268 44-130 (135)
127 3s7r_A Heterogeneous nuclear r 99.4 1.8E-12 6.3E-17 111.1 9.3 71 191-262 8-87 (87)
128 1x4e_A RNA binding motif, sing 99.4 2.7E-13 9.2E-18 115.8 3.9 73 192-264 3-84 (85)
129 2e44_A Insulin-like growth fac 99.4 2E-12 6.9E-17 112.8 9.5 75 192-266 13-93 (96)
130 2dgw_A Probable RNA-binding pr 99.4 2.5E-12 8.5E-17 111.4 9.8 73 192-266 8-88 (91)
131 2wbr_A GW182, gawky, LD47780P; 99.4 1.4E-12 4.8E-17 116.1 8.4 70 193-263 6-79 (89)
132 3n9u_C Cleavage and polyadenyl 99.3 1.5E-12 5.1E-17 125.8 8.9 74 193-266 54-138 (156)
133 2j76_E EIF-4B, EIF4B, eukaryot 99.3 8.2E-13 2.8E-17 117.1 6.5 74 191-266 16-99 (100)
134 2cqg_A TDP-43, TAR DNA-binding 99.3 4.5E-12 1.5E-16 112.2 11.1 75 191-267 12-95 (103)
135 2kt5_A RNA and export factor-b 99.3 2.1E-12 7.1E-17 118.4 9.3 76 191-266 32-115 (124)
136 2ghp_A U4/U6 snRNA-associated 99.3 3.4E-13 1.2E-17 139.2 4.5 172 101-294 46-238 (292)
137 1rk8_A CG8781-PA, CG8781-PA pr 99.3 2.2E-12 7.6E-17 124.3 9.8 80 190-269 68-156 (165)
138 2e5g_A U6 snRNA-specific termi 99.3 2.3E-12 8E-17 112.6 8.9 72 193-266 7-83 (94)
139 1x5o_A RNA binding motif, sing 99.3 5.2E-12 1.8E-16 113.7 11.3 76 191-266 22-113 (114)
140 2i2y_A Fusion protein consists 99.3 2.6E-12 8.8E-17 121.5 9.6 76 191-266 70-149 (150)
141 3nmr_A Cugbp ELAV-like family 99.3 3.1E-12 1E-16 120.7 9.9 101 193-293 2-121 (175)
142 1fj7_A Nucleolin RBD1, protein 99.3 6.3E-13 2.1E-17 117.3 4.7 77 192-269 15-99 (101)
143 2adc_A Polypyrimidine tract-bi 99.3 3.5E-12 1.2E-16 128.4 10.7 102 191-292 31-176 (229)
144 1qm9_A Polypyrimidine tract-bi 99.3 3E-12 1E-16 124.7 10.0 74 192-265 118-197 (198)
145 1x4f_A Matrin 3; structural ge 99.3 1.9E-12 6.6E-17 119.5 7.9 77 191-267 22-104 (112)
146 2g4b_A Splicing factor U2AF 65 99.3 1.3E-12 4.3E-17 123.6 6.8 148 101-263 9-172 (172)
147 1fxl_A Paraneoplastic encephal 99.3 4.5E-13 1.6E-17 125.2 3.4 147 101-262 7-167 (167)
148 2cjk_A Nuclear polyadenylated 99.3 2.1E-12 7.2E-17 121.5 7.9 100 193-294 2-114 (167)
149 1x4b_A Heterogeneous nuclear r 99.3 2.4E-12 8.1E-17 116.5 7.9 76 192-268 25-109 (116)
150 2krb_A Eukaryotic translation 99.3 1.1E-12 3.8E-17 111.6 5.2 67 194-260 1-81 (81)
151 3egn_A RNA-binding protein 40; 99.3 2.2E-12 7.5E-17 121.0 7.8 77 192-268 43-133 (143)
152 1wg5_A Heterogeneous nuclear r 99.3 5E-12 1.7E-16 113.0 9.6 75 191-266 12-95 (104)
153 3zzy_A Polypyrimidine tract-bi 99.3 2.6E-12 8.9E-17 121.7 8.1 72 195-266 29-107 (130)
154 2mss_A Protein (musashi1); RNA 99.3 1.6E-12 5.5E-17 108.5 6.0 66 196-262 1-75 (75)
155 2hvz_A Splicing factor, argini 99.3 1.8E-12 6.2E-17 114.3 6.5 73 195-267 1-77 (101)
156 2jwn_A Embryonic polyadenylate 99.3 3.9E-12 1.3E-16 116.2 8.9 73 193-266 35-116 (124)
157 1wg1_A KIAA1579 protein, homol 99.3 3.5E-12 1.2E-16 110.4 7.7 72 193-266 4-79 (88)
158 2cq2_A Hypothetical protein LO 99.3 3.8E-12 1.3E-16 118.0 8.2 75 191-265 22-106 (114)
159 1qm9_A Polypyrimidine tract-bi 99.3 5.6E-12 1.9E-16 122.7 9.6 99 194-292 3-145 (198)
160 1s79_A Lupus LA protein; RRM, 99.3 2.5E-12 8.4E-17 116.0 6.6 73 191-264 8-88 (103)
161 2ki2_A SS-DNA binding protein 99.3 6.2E-13 2.1E-17 114.7 2.4 71 195-266 2-81 (90)
162 1uaw_A Mouse-musashi-1; RNP-ty 99.3 1.6E-12 5.5E-17 108.6 4.6 67 195-262 1-76 (77)
163 1sjr_A Polypyrimidine tract-bi 99.3 5.6E-12 1.9E-16 123.8 8.9 73 194-266 46-125 (164)
164 3sde_A Paraspeckle component 1 99.3 1.1E-11 3.9E-16 127.2 11.7 100 192-294 20-123 (261)
165 2adc_A Polypyrimidine tract-bi 99.3 5.2E-12 1.8E-16 127.1 8.8 74 192-265 149-228 (229)
166 1fje_B Nucleolin RBD12, protei 99.3 2E-12 7E-17 123.0 5.2 103 191-294 10-126 (175)
167 2lcw_A RNA-binding protein FUS 98.9 3.7E-13 1.3E-17 122.0 0.0 77 191-267 4-97 (116)
168 2diu_A KIAA0430 protein; struc 99.3 9.8E-12 3.4E-16 112.0 9.2 73 192-267 6-86 (96)
169 3beg_B Splicing factor, argini 99.3 6E-12 2.1E-16 114.7 7.4 75 192-266 14-95 (115)
170 1wel_A RNA-binding protein 12; 99.3 3.4E-12 1.2E-16 117.3 5.6 75 191-266 22-105 (124)
171 2cpy_A RNA-binding protein 12; 99.3 3.9E-12 1.3E-16 115.4 5.8 75 191-266 12-95 (114)
172 3d2w_A TAR DNA-binding protein 99.2 1.8E-11 6E-16 107.1 9.1 74 191-268 8-87 (89)
173 2db1_A Heterogeneous nuclear r 99.2 1E-11 3.5E-16 113.8 7.8 73 192-265 15-98 (118)
174 2e5i_A Heterogeneous nuclear r 99.2 2.8E-11 9.6E-16 113.5 10.7 71 196-266 27-103 (124)
175 2xs2_A Deleted in azoospermia- 99.2 4E-12 1.4E-16 112.3 4.5 75 190-266 5-87 (102)
176 3q2s_C Cleavage and polyadenyl 99.2 5.9E-12 2E-16 128.5 6.4 74 193-266 67-151 (229)
177 3pgw_A U1-A; protein-RNA compl 99.2 1.3E-11 4.5E-16 126.7 8.6 73 191-263 204-281 (282)
178 1wez_A HnRNP H', FTP-3, hetero 99.2 1.2E-11 4.1E-16 110.9 7.1 73 192-266 13-93 (102)
179 2f3j_A RNA and export factor b 99.2 2.1E-11 7.1E-16 119.9 8.5 76 191-266 85-168 (177)
180 2bz2_A Negative elongation fac 99.2 2.3E-11 7.9E-16 112.5 8.1 75 191-268 36-114 (121)
181 1iqt_A AUF1, heterogeneous nuc 99.2 6.3E-12 2.2E-16 104.7 3.9 66 196-262 1-75 (75)
182 2hgl_A HNRPF protein, heteroge 99.2 9.6E-12 3.3E-16 118.0 5.4 74 192-266 42-126 (136)
183 1wf0_A TDP-43, TAR DNA-binding 99.2 1.9E-11 6.5E-16 105.3 6.7 74 193-268 4-81 (88)
184 2hzc_A Splicing factor U2AF 65 99.2 3.3E-11 1.1E-15 102.8 7.4 69 192-261 4-86 (87)
185 2lmi_A GRSF-1, G-rich sequence 99.2 1.1E-11 3.6E-16 111.4 4.1 74 192-266 9-93 (107)
186 2dnn_A RNA-binding protein 12; 99.2 2.9E-11 9.8E-16 110.5 7.0 70 193-264 15-92 (109)
187 4fxv_A ELAV-like protein 1; RN 99.2 9.2E-11 3.1E-15 104.6 9.8 79 623-707 19-97 (99)
188 3tyt_A Heterogeneous nuclear r 99.1 3.3E-11 1.1E-15 120.8 6.5 71 192-262 121-204 (205)
189 2lkz_A RNA-binding protein 5; 99.1 8.2E-11 2.8E-15 104.9 8.4 88 620-707 6-93 (95)
190 3sde_A Paraspeckle component 1 99.1 5.6E-11 1.9E-15 122.1 7.8 142 101-268 27-182 (261)
191 2hgn_A Heterogeneous nuclear r 99.1 2.2E-11 7.5E-16 116.0 4.0 73 192-266 44-124 (139)
192 2dnl_A Cytoplasmic polyadenyla 99.1 1.4E-10 4.7E-15 105.3 8.8 74 192-268 6-91 (114)
193 3pgw_S U1-70K; protein-RNA com 99.1 1.2E-10 4.2E-15 129.6 10.0 76 192-267 100-184 (437)
194 2dha_A FLJ20171 protein; RRM d 99.1 4.2E-11 1.4E-15 111.8 3.9 73 192-265 21-105 (123)
195 3u1l_A PRE-mRNA-splicing facto 99.1 9.4E-11 3.2E-15 121.4 6.7 76 191-266 131-230 (240)
196 2hgm_A HNRPF protein, heteroge 99.1 7.3E-11 2.5E-15 110.8 5.2 72 192-265 40-121 (126)
197 2dit_A HIV TAT specific factor 99.0 7.6E-10 2.6E-14 100.2 10.6 76 191-266 12-103 (112)
198 2pe8_A Splicing factor 45; RRM 99.0 4.9E-10 1.7E-14 101.6 9.3 73 192-264 6-93 (105)
199 3mdf_A Peptidyl-prolyl CIS-tra 99.0 6.9E-10 2.4E-14 94.2 9.5 82 620-707 4-85 (85)
200 2e5h_A Zinc finger CCHC-type a 99.0 5.9E-10 2E-14 96.6 8.1 81 621-707 14-94 (94)
201 2j8a_A Histone-lysine N-methyl 99.0 2.7E-10 9.2E-15 108.3 6.3 73 195-267 3-98 (136)
202 1whw_A Hypothetical protein ri 99.0 1.4E-09 4.7E-14 95.3 10.2 85 620-710 5-89 (99)
203 3bs9_A Nucleolysin TIA-1 isofo 99.0 1.8E-09 6.2E-14 92.0 10.2 82 621-708 4-85 (87)
204 2div_A TRNA selenocysteine ass 99.0 1.3E-09 4.3E-14 95.5 9.1 90 620-711 6-96 (99)
205 2dnz_A Probable RNA-binding pr 99.0 1.7E-09 5.9E-14 93.8 9.4 83 621-709 3-85 (95)
206 2cpz_A CUG triplet repeat RNA- 99.0 2E-09 6.7E-14 97.1 10.0 84 621-710 23-106 (115)
207 2cqc_A Arginine/serine-rich sp 99.0 2.1E-09 7.3E-14 93.0 9.9 81 621-707 13-93 (95)
208 3md1_A Nuclear and cytoplasmic 99.0 2.2E-09 7.4E-14 90.7 9.6 79 624-708 2-80 (83)
209 2voo_A Lupus LA protein; RNA-b 99.0 1.1E-09 3.8E-14 108.9 9.0 73 193-266 108-188 (193)
210 1x5s_A Cold-inducible RNA-bind 99.0 2.2E-09 7.7E-14 94.4 9.8 83 621-709 10-92 (102)
211 2cqb_A Peptidyl-prolyl CIS-tra 99.0 1.8E-09 6.3E-14 95.0 9.1 84 621-710 10-93 (102)
212 2cpf_A RNA binding motif prote 98.9 2.2E-09 7.6E-14 93.8 8.9 85 619-709 1-88 (98)
213 1p27_B RNA-binding protein 8A; 98.9 3.9E-09 1.3E-13 93.5 10.5 83 622-710 22-104 (106)
214 1x5t_A Splicing factor 3B subu 98.9 2E-09 6.9E-14 93.5 8.3 85 620-710 2-87 (96)
215 2dgo_A Cytotoxic granule-assoc 98.9 3.4E-09 1.2E-13 95.4 10.1 83 621-709 13-95 (115)
216 2dnm_A SRP46 splicing factor; 98.9 2.2E-09 7.4E-14 94.8 8.5 84 621-710 11-94 (103)
217 2ywk_A Putative RNA-binding pr 98.9 4.4E-09 1.5E-13 91.2 9.8 81 620-707 13-93 (95)
218 1x5o_A RNA binding motif, sing 98.9 3.6E-09 1.2E-13 95.1 9.3 84 621-707 23-110 (114)
219 2khc_A Testis-specific RNP-typ 98.9 2.2E-09 7.4E-14 97.1 7.8 81 621-707 38-118 (118)
220 2x1f_A MRNA 3'-END-processing 98.9 4.1E-09 1.4E-13 92.1 9.2 83 624-712 3-85 (96)
221 2jrs_A RNA-binding protein 39; 98.9 4.6E-09 1.6E-13 94.7 9.7 89 615-709 18-106 (108)
222 3ulh_A THO complex subunit 4; 98.9 6.7E-09 2.3E-13 92.1 10.6 82 619-707 25-106 (107)
223 1u6f_A Tcubp1, RNA-binding pro 98.9 7.4E-09 2.5E-13 96.2 11.2 84 620-709 39-122 (139)
224 2cq0_A Eukaryotic translation 98.9 3E-09 1E-13 94.0 8.1 84 621-710 13-96 (103)
225 1p1t_A Cleavage stimulation fa 98.9 5.8E-09 2E-13 91.9 9.9 88 622-715 7-94 (104)
226 2do4_A Squamous cell carcinoma 98.9 6.9E-09 2.4E-13 91.1 10.4 82 621-709 15-96 (100)
227 2cqp_A RNA-binding protein 12; 98.9 2.6E-09 8.9E-14 93.3 7.3 83 619-707 11-93 (98)
228 2d9p_A Polyadenylate-binding p 98.9 4.2E-09 1.4E-13 93.0 8.6 82 621-710 13-94 (103)
229 1oo0_B CG8781-PA, drosophila Y 98.9 6.9E-09 2.4E-13 92.7 10.1 85 621-711 24-108 (110)
230 2dgp_A Bruno-like 4, RNA bindi 98.9 6.1E-09 2.1E-13 92.2 9.5 87 621-710 11-97 (106)
231 1x5u_A Splicing factor 3B subu 98.9 5.1E-09 1.7E-13 92.6 8.7 84 621-710 13-96 (105)
232 3ex7_B RNA-binding protein 8A; 98.9 5.6E-09 1.9E-13 95.4 9.2 84 622-711 21-104 (126)
233 2la6_A RNA-binding protein FUS 98.9 8.5E-09 2.9E-13 90.6 9.8 82 620-707 10-99 (99)
234 3p5t_L Cleavage and polyadenyl 98.9 3.3E-09 1.1E-13 91.9 7.1 83 623-709 1-83 (90)
235 2lxi_A RNA-binding protein 10; 98.9 2.8E-09 9.6E-14 93.3 6.6 80 624-709 2-83 (91)
236 4a8x_A RNA-binding protein wit 98.9 6.5E-09 2.2E-13 88.6 8.7 81 623-709 4-85 (88)
237 3tht_A Alkylated DNA repair pr 98.9 3.9E-09 1.3E-13 114.5 9.1 73 191-263 15-97 (345)
238 2cpe_A RNA-binding protein EWS 98.9 6.6E-09 2.3E-13 93.2 9.1 84 621-710 13-104 (113)
239 2cph_A RNA binding motif prote 98.9 7.6E-09 2.6E-13 91.6 9.3 83 621-709 13-97 (107)
240 1h2v_Z 20 kDa nuclear CAP bind 98.9 8.4E-09 2.9E-13 97.9 10.2 82 621-708 37-118 (156)
241 2dgv_A HnRNP M, heterogeneous 98.9 6.9E-09 2.4E-13 89.4 8.8 83 619-709 4-86 (92)
242 2fc8_A NCL protein; structure 98.8 5.6E-09 1.9E-13 91.9 8.3 81 621-710 13-93 (102)
243 3s8s_A Histone-lysine N-methyl 98.8 9.9E-09 3.4E-13 93.3 10.1 97 620-722 3-100 (110)
244 3v4m_A Splicing factor U2AF 65 98.8 5.8E-09 2E-13 94.4 8.5 74 192-265 3-97 (105)
245 1x4h_A RNA-binding protein 28; 98.8 9.9E-09 3.4E-13 91.4 9.9 84 621-710 13-102 (111)
246 2dnh_A Bruno-like 5, RNA bindi 98.8 1.2E-08 4.2E-13 90.2 9.8 85 621-709 13-97 (105)
247 2kt5_A RNA and export factor-b 98.8 1.6E-08 5.3E-13 92.5 10.7 84 619-709 31-114 (124)
248 2ek1_A RNA-binding protein 12; 98.8 5.5E-09 1.9E-13 90.6 7.2 83 619-707 11-93 (95)
249 2dgs_A DAZ-associated protein 98.8 1.2E-08 4E-13 89.5 9.3 82 621-709 8-89 (99)
250 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.8 9.5E-09 3.2E-13 94.9 8.9 79 622-706 62-140 (140)
251 3ns6_A Eukaryotic translation 98.8 6.2E-09 2.1E-13 92.4 7.1 81 622-707 5-91 (100)
252 2fy1_A RNA-binding motif prote 98.8 1.3E-08 4.5E-13 92.8 9.4 83 620-709 4-86 (116)
253 2dng_A Eukaryotic translation 98.8 1.1E-08 3.7E-13 90.5 8.4 81 621-709 13-93 (103)
254 2dh8_A DAZ-associated protein 98.8 7.6E-09 2.6E-13 91.6 7.4 83 620-709 13-95 (105)
255 2cqi_A Nucleolysin TIAR; RNA r 98.8 2E-08 6.9E-13 88.6 10.0 83 620-710 12-94 (103)
256 2do0_A HnRNP M, heterogeneous 98.8 1.8E-08 6.1E-13 90.3 9.7 82 621-709 13-94 (114)
257 2cqd_A RNA-binding region cont 98.8 8.9E-09 3.1E-13 92.9 7.7 82 621-709 15-96 (116)
258 2cq3_A RNA-binding protein 9; 98.8 1.8E-08 6.1E-13 88.9 9.5 81 621-709 13-93 (103)
259 3ucg_A Polyadenylate-binding p 98.8 1.4E-08 4.7E-13 86.8 8.2 79 623-708 6-84 (89)
260 2cpx_A Hypothetical protein FL 98.8 8.6E-09 2.9E-13 92.6 6.9 84 621-710 23-106 (115)
261 1x4e_A RNA binding motif, sing 98.8 3E-09 1E-13 90.6 3.4 71 621-693 3-73 (85)
262 2dgw_A Probable RNA-binding pr 98.8 3.3E-08 1.1E-12 85.3 10.1 80 621-709 8-87 (91)
263 1rk8_A CG8781-PA, CG8781-PA pr 98.8 2.5E-08 8.6E-13 95.9 10.2 86 621-712 70-155 (165)
264 3s7r_A Heterogeneous nuclear r 98.8 2.8E-08 9.6E-13 84.9 9.4 80 620-706 8-87 (87)
265 2dgx_A KIAA0430 protein; RRM d 98.8 2.7E-08 9.3E-13 87.3 9.5 80 621-709 7-90 (96)
266 2m2b_A RNA-binding protein 10; 98.8 7.9E-09 2.7E-13 95.8 6.3 81 621-708 21-107 (131)
267 2kxn_B Transformer-2 protein h 98.7 1.1E-08 3.8E-13 95.3 7.2 83 621-709 44-126 (129)
268 1wi8_A EIF-4B, eukaryotic tran 98.7 1.8E-08 6E-13 89.3 8.0 81 621-709 13-94 (104)
269 2fc9_A NCL protein; structure 98.7 2.3E-08 7.9E-13 87.9 8.7 81 621-711 13-93 (101)
270 1uw4_A UPF3X; nonsense mediate 98.7 2.5E-08 8.6E-13 89.2 8.7 84 624-709 2-88 (91)
271 2cqg_A TDP-43, TAR DNA-binding 98.7 4.1E-08 1.4E-12 86.6 10.0 82 620-709 12-93 (103)
272 4f25_A Polyadenylate-binding p 98.7 3E-08 1E-12 90.1 9.4 79 623-709 5-83 (115)
273 2dhg_A TRNA selenocysteine ass 98.7 1.7E-08 6E-13 89.0 7.4 82 621-709 7-90 (104)
274 2ki2_A SS-DNA binding protein 98.7 9E-09 3.1E-13 88.5 5.4 79 624-709 2-80 (90)
275 1jmt_A Splicing factor U2AF 35 98.7 3.7E-09 1.3E-13 95.4 3.1 64 199-262 20-103 (104)
276 2kn4_A Immunoglobulin G-bindin 98.7 3.6E-08 1.2E-12 93.3 9.9 83 621-709 68-150 (158)
277 3n9u_C Cleavage and polyadenyl 98.7 3.8E-08 1.3E-12 94.9 10.0 88 621-712 53-140 (156)
278 1x4a_A Splicing factor, argini 98.7 3.7E-08 1.3E-12 87.9 9.1 80 621-709 20-99 (109)
279 2hvz_A Splicing factor, argini 98.7 2.3E-08 7.9E-13 87.9 7.6 76 624-710 1-76 (101)
280 1uaw_A Mouse-musashi-1; RNP-ty 98.7 1.9E-08 6.4E-13 83.8 6.6 76 624-706 1-76 (77)
281 2lea_A Serine/arginine-rich sp 98.7 1.2E-08 4.1E-13 95.8 5.9 85 621-711 45-129 (135)
282 2d9o_A DNAJ (HSP40) homolog, s 98.7 5E-08 1.7E-12 88.0 9.6 72 194-267 10-92 (100)
283 2mss_A Protein (musashi1); RNA 98.7 2.4E-08 8.3E-13 83.0 7.0 75 625-706 1-75 (75)
284 2dis_A Unnamed protein product 98.7 3.9E-08 1.3E-12 87.5 8.5 84 621-710 6-93 (109)
285 3ue2_A Poly(U)-binding-splicin 98.7 3.3E-08 1.1E-12 91.7 8.3 73 192-264 18-108 (118)
286 2cq4_A RNA binding motif prote 98.7 4E-08 1.4E-12 88.4 8.4 82 622-710 24-105 (114)
287 1x4b_A Heterogeneous nuclear r 98.7 3E-08 1E-12 89.5 7.6 82 622-710 26-107 (116)
288 2err_A Ataxin-2-binding protei 98.7 4.6E-08 1.6E-12 88.0 8.6 81 621-709 27-107 (109)
289 2dha_A FLJ20171 protein; RRM d 98.7 5.6E-08 1.9E-12 90.6 9.4 96 621-722 21-118 (123)
290 2db1_A Heterogeneous nuclear r 98.7 6.5E-08 2.2E-12 88.5 9.4 93 621-719 15-108 (118)
291 2dnq_A RNA-binding protein 4B; 98.7 6.1E-08 2.1E-12 83.6 8.7 77 620-710 5-81 (90)
292 1x4g_A Nucleolysin TIAR; struc 98.7 6.1E-08 2.1E-12 86.7 8.7 80 619-710 21-100 (109)
293 2cpy_A RNA-binding protein 12; 98.6 3.7E-08 1.3E-12 89.2 7.2 82 621-710 13-95 (114)
294 2cpj_A Non-POU domain-containi 98.6 4.5E-08 1.5E-12 85.9 7.5 76 622-709 14-89 (99)
295 2f3j_A RNA and export factor b 98.6 7.7E-08 2.6E-12 94.5 9.6 85 619-710 84-168 (177)
296 3lqv_A PRE-mRNA branch site pr 98.6 8.2E-08 2.8E-12 86.3 9.0 81 619-708 4-84 (115)
297 2la4_A Nuclear and cytoplasmic 98.6 5.5E-08 1.9E-12 85.5 7.6 75 621-707 25-99 (101)
298 1nu4_A U1A RNA binding domain; 98.6 5.2E-08 1.8E-12 84.7 7.4 83 621-712 6-92 (97)
299 1wg1_A KIAA1579 protein, homol 98.6 6.8E-08 2.3E-12 83.3 8.0 78 619-709 1-78 (88)
300 2cpd_A Apobec-1 stimulating pr 98.6 1.1E-07 3.7E-12 83.5 9.3 78 621-710 13-90 (99)
301 1iqt_A AUF1, heterogeneous nuc 98.6 3.7E-08 1.3E-12 81.7 5.9 75 625-706 1-75 (75)
302 1wel_A RNA-binding protein 12; 98.6 3.6E-08 1.2E-12 90.4 6.3 91 621-718 23-113 (124)
303 2cqh_A IGF-II mRNA-binding pro 98.6 7.1E-08 2.4E-12 83.6 7.7 77 620-709 5-83 (93)
304 2dgu_A Heterogeneous nuclear r 98.6 1.1E-07 3.8E-12 84.1 9.1 77 620-710 8-84 (103)
305 2jwn_A Embryonic polyadenylate 98.6 7E-08 2.4E-12 87.9 8.0 81 622-709 35-115 (124)
306 1x4c_A Splicing factor, argini 98.6 1.1E-07 3.7E-12 85.2 9.1 78 622-708 14-92 (108)
307 3q2s_C Cleavage and polyadenyl 98.6 7.8E-08 2.7E-12 98.1 8.8 85 622-712 67-153 (229)
308 2l08_A Regulator of nonsense t 98.6 2.2E-08 7.6E-13 90.4 4.1 84 624-709 10-96 (97)
309 2jvo_A Nucleolar protein 3; nu 98.6 1.1E-07 3.6E-12 85.9 8.5 78 620-711 28-105 (108)
310 2cpi_A CCR4-NOT transcription 98.6 5.7E-08 2E-12 87.5 6.5 83 622-710 14-102 (111)
311 2ytc_A PRE-mRNA-splicing facto 98.6 1E-07 3.4E-12 80.9 7.6 75 621-707 10-85 (85)
312 1whx_A Hypothetical protein ri 98.6 1.2E-07 4.1E-12 85.8 8.6 75 622-708 9-83 (111)
313 1fjc_A Nucleolin RBD2, protein 98.6 8.6E-08 2.9E-12 83.3 7.2 79 621-710 14-92 (96)
314 3s6e_A RNA-binding protein 39; 98.6 1.6E-07 5.5E-12 86.6 9.3 74 192-265 5-93 (114)
315 2dgt_A RNA-binding protein 30; 98.6 2.6E-07 8.9E-12 79.9 10.0 76 620-709 7-82 (92)
316 1fj7_A Nucleolin RBD1, protein 98.6 4.1E-08 1.4E-12 86.3 4.9 81 621-709 15-95 (101)
317 2hgl_A HNRPF protein, heteroge 98.5 1.4E-07 4.7E-12 89.5 8.3 82 621-710 42-126 (136)
318 1why_A Hypothetical protein ri 98.5 2.2E-07 7.5E-12 81.2 9.0 79 621-709 15-93 (97)
319 2nlw_A Eukaryotic translation 98.5 1.6E-07 5.6E-12 83.7 8.3 79 621-707 13-98 (105)
320 3egn_A RNA-binding protein 40; 98.5 7.6E-08 2.6E-12 90.1 6.3 84 621-710 43-131 (143)
321 2rs2_A Musashi-1, RNA-binding 98.5 1.4E-07 4.8E-12 85.0 7.5 83 620-709 22-104 (109)
322 2lcw_A RNA-binding protein FUS 97.9 1.2E-08 4E-13 92.3 0.0 83 621-709 5-95 (116)
323 1wg5_A Heterogeneous nuclear r 98.5 1.7E-07 5.9E-12 83.4 7.5 80 621-708 13-93 (104)
324 2xnq_A Nuclear polyadenylated 98.5 3.7E-07 1.3E-11 80.5 9.4 76 621-710 20-96 (97)
325 2e5j_A Methenyltetrahydrofolat 98.5 2.3E-07 7.7E-12 81.2 7.8 78 621-709 17-94 (97)
326 1owx_A Lupus LA protein, SS-B, 98.5 2.8E-07 9.7E-12 86.3 8.9 77 192-268 16-99 (121)
327 2lmi_A GRSF-1, G-rich sequence 98.5 1.5E-07 5E-12 84.3 6.3 91 620-716 8-99 (107)
328 2j76_E EIF-4B, EIF4B, eukaryot 98.5 7.2E-08 2.5E-12 85.2 4.1 79 621-707 17-96 (100)
329 2cq2_A Hypothetical protein LO 98.5 2.8E-07 9.5E-12 85.4 8.2 79 621-707 23-104 (114)
330 2dnr_A Synaptojanin-1; RRM dom 98.5 2.8E-07 9.4E-12 82.5 7.7 72 192-265 5-86 (91)
331 1wf1_A RNA-binding protein RAL 98.5 5.1E-07 1.7E-11 80.8 9.5 73 622-708 26-99 (110)
332 2jvr_A Nucleolar protein 3; RN 98.5 4.4E-07 1.5E-11 83.1 9.0 77 621-707 26-103 (111)
333 2xs2_A Deleted in azoospermia- 98.4 2.7E-07 9.3E-12 81.2 7.1 80 620-708 6-85 (102)
334 2dnp_A RNA-binding protein 14; 98.4 5.5E-07 1.9E-11 77.6 8.8 76 620-709 6-81 (90)
335 1sjq_A Polypyrimidine tract-bi 98.4 2.6E-07 9E-12 84.3 6.6 79 621-711 14-94 (105)
336 2a3j_A U1 small nuclear ribonu 98.4 4.1E-07 1.4E-11 85.1 8.1 83 622-711 28-112 (127)
337 2i2y_A Fusion protein consists 98.4 4.6E-07 1.6E-11 85.4 8.2 79 620-709 70-148 (150)
338 2kvi_A Nuclear polyadenylated 98.4 5.1E-07 1.7E-11 79.0 7.9 78 620-711 7-85 (96)
339 1s79_A Lupus LA protein; RRM, 98.4 3.8E-07 1.3E-11 82.0 7.2 78 622-707 10-87 (103)
340 3beg_B Splicing factor, argini 98.4 1.8E-07 6.1E-12 85.0 5.1 64 622-694 15-78 (115)
341 3pgw_S U1-70K; protein-RNA com 98.4 5.8E-07 2E-11 100.1 9.4 83 621-709 100-182 (437)
342 2cq1_A PTB-like protein L; RRM 98.4 6.4E-07 2.2E-11 80.6 7.9 78 621-710 13-92 (101)
343 1wex_A Hypothetical protein (r 98.4 5.3E-07 1.8E-11 81.5 7.3 78 623-710 15-92 (104)
344 1wez_A HnRNP H', FTP-3, hetero 98.4 5.7E-07 1.9E-11 80.4 7.1 79 621-708 13-91 (102)
345 2e44_A Insulin-like growth fac 98.3 1.3E-06 4.5E-11 75.8 8.8 77 621-707 13-90 (96)
346 1x4f_A Matrin 3; structural ge 98.3 6.9E-07 2.4E-11 82.4 7.1 87 611-707 13-100 (112)
347 2dnn_A RNA-binding protein 12; 98.3 1.1E-06 3.9E-11 80.0 8.2 77 622-707 15-91 (109)
348 2krb_A Eukaryotic translation 98.3 8E-07 2.8E-11 75.2 6.4 66 624-693 2-73 (81)
349 1x4d_A Matrin 3; structural ge 98.3 6.7E-07 2.3E-11 80.9 6.0 76 621-708 13-91 (102)
350 2ad9_A Polypyrimidine tract-bi 98.3 1.6E-06 5.5E-11 80.7 8.5 77 622-710 30-108 (119)
351 2dnl_A Cytoplasmic polyadenyla 98.3 2.1E-06 7.3E-11 77.6 8.7 70 620-692 5-80 (114)
352 3d2w_A TAR DNA-binding protein 98.3 1.9E-06 6.6E-11 75.0 8.0 76 621-709 9-84 (89)
353 3r27_A HnRNP L, heterogeneous 98.2 3E-06 1E-10 76.7 8.3 79 621-709 19-97 (100)
354 1x5p_A Negative elongation fac 98.2 3.5E-06 1.2E-10 73.7 8.4 76 621-710 13-88 (97)
355 1wf0_A TDP-43, TAR DNA-binding 98.2 2.9E-06 9.8E-11 72.8 6.7 76 621-709 3-78 (88)
356 2hgm_A HNRPF protein, heteroge 98.2 1.8E-06 6E-11 81.0 5.7 79 622-707 41-119 (126)
357 1ufw_A Synaptojanin 2; RNP dom 98.1 2.8E-06 9.5E-11 76.5 5.7 71 192-264 13-94 (95)
358 2hgn_A Heterogeneous nuclear r 98.1 1.4E-06 4.7E-11 82.9 3.7 79 621-708 44-122 (139)
359 2hzc_A Splicing factor U2AF 65 98.1 5.5E-06 1.9E-10 70.2 6.4 72 622-704 5-85 (87)
360 2e5g_A U6 snRNA-specific termi 98.0 4.5E-06 1.5E-10 72.5 5.7 74 622-707 7-80 (94)
361 2wbr_A GW182, gawky, LD47780P; 98.0 1.6E-05 5.4E-10 70.9 9.2 73 623-707 7-79 (89)
362 1sjr_A Polypyrimidine tract-bi 98.0 1.8E-05 6.2E-10 77.7 9.6 78 624-709 47-124 (164)
363 2pe8_A Splicing factor 45; RRM 97.9 2.8E-05 9.7E-10 70.2 9.1 81 622-708 7-93 (105)
364 2bz2_A Negative elongation fac 97.9 2.1E-05 7.1E-10 72.5 8.3 77 621-711 37-113 (121)
365 2voo_A Lupus LA protein; RNA-b 97.9 2.4E-05 8.4E-10 77.6 7.7 78 622-707 108-185 (193)
366 3u1l_A PRE-mRNA-splicing facto 97.8 2.6E-05 9.1E-10 80.7 7.9 80 621-708 132-228 (240)
367 3dxb_A Thioredoxin N-terminall 97.8 1.9E-05 6.4E-10 78.9 6.6 59 206-264 141-212 (222)
368 2dit_A HIV TAT specific factor 97.8 3.9E-05 1.3E-09 69.1 7.7 75 623-707 15-100 (112)
369 3zzy_A Polypyrimidine tract-bi 97.7 0.00011 3.9E-09 69.4 9.7 83 618-709 23-106 (130)
370 2diu_A KIAA0430 protein; struc 97.7 5.2E-05 1.8E-09 68.4 6.8 75 621-709 7-84 (96)
371 3v4m_A Splicing factor U2AF 65 97.7 0.00011 3.9E-09 66.1 8.3 79 624-708 6-96 (105)
372 3ue2_A Poly(U)-binding-splicin 97.7 0.00013 4.5E-09 67.4 8.7 90 612-708 10-108 (118)
373 2e5i_A Heterogeneous nuclear r 97.5 0.00028 9.6E-09 66.0 9.2 76 625-710 27-103 (124)
374 2j8a_A Histone-lysine N-methyl 97.4 0.00067 2.3E-08 64.7 9.4 78 624-707 3-94 (136)
375 1jmt_A Splicing factor U2AF 35 97.3 0.00017 5.8E-09 64.8 4.4 72 630-706 22-103 (104)
376 2d9o_A DNAJ (HSP40) homolog, s 97.3 0.00068 2.3E-08 60.9 8.3 76 623-711 10-92 (100)
377 3tht_A Alkylated DNA repair pr 97.3 0.0005 1.7E-08 74.7 8.5 78 621-706 16-96 (345)
378 3s6e_A RNA-binding protein 39; 97.0 0.002 6.9E-08 59.2 8.3 87 625-722 9-103 (114)
379 2l9w_A U4/U6 snRNA-associated- 96.7 0.0034 1.2E-07 58.1 7.2 69 194-262 21-97 (117)
380 1wey_A Calcipressin 1; structu 96.3 0.0051 1.8E-07 56.2 5.9 73 194-266 5-85 (104)
381 2dhx_A Poly (ADP-ribose) polym 95.7 0.061 2.1E-06 49.2 10.2 83 194-278 8-97 (104)
382 3dxb_A Thioredoxin N-terminall 94.0 0.1 3.5E-06 51.7 7.5 65 637-707 143-211 (222)
383 2dnr_A Synaptojanin-1; RRM dom 92.9 0.23 7.8E-06 44.4 7.0 71 624-707 8-84 (91)
384 1uw4_A UPF3X; nonsense mediate 91.2 0.41 1.4E-05 42.6 6.6 59 195-253 2-71 (91)
385 1owx_A Lupus LA protein, SS-B, 90.7 0.73 2.5E-05 42.9 8.1 79 623-713 18-98 (121)
386 1wwh_A Nucleoporin 35, nucleop 89.2 0.97 3.3E-05 42.2 7.6 67 194-263 24-95 (119)
387 1ufw_A Synaptojanin 2; RNP dom 88.4 0.88 3E-05 40.9 6.5 70 623-705 15-91 (95)
388 1wey_A Calcipressin 1; structu 86.8 1.1 3.7E-05 41.0 6.2 78 619-707 1-82 (104)
389 3p3d_A Nucleoporin 53; structu 83.6 1.4 4.7E-05 41.9 5.4 69 194-264 7-98 (132)
390 2l08_A Regulator of nonsense t 82.3 2.9 9.9E-05 37.7 6.8 70 193-262 8-93 (97)
391 1whv_A Poly(A)-specific ribonu 80.4 2.5 8.6E-05 38.3 5.6 51 197-248 18-70 (100)
392 2dhx_A Poly (ADP-ribose) polym 76.7 6.7 0.00023 35.8 7.3 60 618-686 3-66 (104)
393 3pq1_A Poly(A) RNA polymerase; 66.8 1.9 6.7E-05 48.5 1.8 50 194-245 53-107 (464)
394 3ctr_A Poly(A)-specific ribonu 64.0 4.1 0.00014 37.0 3.0 51 197-248 8-60 (101)
395 2l9w_A U4/U6 snRNA-associated- 62.3 40 0.0014 31.3 9.2 74 621-704 19-95 (117)
396 3d45_A Poly(A)-specific ribonu 31.3 73 0.0025 36.0 7.0 52 195-248 441-494 (507)
397 2qih_A Protein USPA1; trimeric 26.5 15 0.0005 35.1 0.2 16 484-499 2-17 (157)
398 3v2a_A Vascular endothelial gr 23.6 17 0.00058 34.5 0.0 16 484-499 3-18 (134)
399 2ls0_1 Zoocin A endopeptidase; 22.4 35 0.0012 31.9 1.8 14 484-497 2-15 (128)
No 1
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.72 E-value=2.4e-16 Score=148.36 Aligned_cols=79 Identities=20% Similarity=0.149 Sum_probs=71.5
Q ss_pred eeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccEEEE
Q 003964 624 TTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASL 703 (783)
Q Consensus 624 TTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv~~v 703 (783)
+||.|+|||..+|.++|.+++..+ |....+.++.|..++.+.|||||.|.+.++|.+.++.+||+.+.. ..+.+.|
T Consensus 90 ~~l~v~nl~~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~~~l~V 165 (168)
T 1b7f_A 90 TNLYVTNLPRTITDDQLDTIFGKY--GSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG--GSQPLSV 165 (168)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTSS--SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT--CSSCCEE
T ss_pred CCEEEeCCCCCCCHHHHHHhhhcC--CcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecC--CCeEEEE
Confidence 689999999999999999999776 788999999999899999999999999999999999999998862 3477888
Q ss_pred Eee
Q 003964 704 AYA 706 (783)
Q Consensus 704 ~yA 706 (783)
.||
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 887
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.3e-15 Score=142.33 Aligned_cols=78 Identities=14% Similarity=0.257 Sum_probs=72.5
Q ss_pred eeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccEEEE
Q 003964 624 TTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASL 703 (783)
Q Consensus 624 TTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv~~v 703 (783)
+||.|+|||..+|.++|++++..+ |....+.++.|..++.+.|||||.|.++++|...++.+||+.+. .+.+.|
T Consensus 88 ~~l~v~nl~~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~i~v 161 (166)
T 3md3_A 88 FNLFVGDLNVNVDDETLRNAFKDF--PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN----GRPLRI 161 (166)
T ss_dssp EEEEEESCCTTCCHHHHHHHHTTS--TTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET----TEECEE
T ss_pred ceEEECCCCCCCCHHHHHHHHhcc--CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC----CcEEEE
Confidence 379999999999999999999765 88899999999999999999999999999999999999999986 688999
Q ss_pred Eeee
Q 003964 704 AYAR 707 (783)
Q Consensus 704 ~yAr 707 (783)
.||+
T Consensus 162 ~~a~ 165 (166)
T 3md3_A 162 NWAA 165 (166)
T ss_dssp EESC
T ss_pred EecC
Confidence 9985
No 3
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.65 E-value=2.9e-15 Score=141.70 Aligned_cols=78 Identities=21% Similarity=0.234 Sum_probs=73.1
Q ss_pred ceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccEEE
Q 003964 623 RTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVAS 702 (783)
Q Consensus 623 RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv~~ 702 (783)
.+||.|+|||..+|.++|.+++..+ |....+.++.|..++.+.|||||.|.++++|.+.++.+||+.+. .+.+.
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 167 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSF--GPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG----DKKLL 167 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTT--SCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEET----TEECE
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhc--CCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEEC----CeEEE
Confidence 6899999999999999999999876 88899999999989999999999999999999999999999887 68889
Q ss_pred EEee
Q 003964 703 LAYA 706 (783)
Q Consensus 703 v~yA 706 (783)
|.||
T Consensus 168 V~~A 171 (172)
T 2g4b_A 168 VQRA 171 (172)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9998
No 4
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.64 E-value=6.8e-14 Score=143.76 Aligned_cols=76 Identities=26% Similarity=0.549 Sum_probs=69.4
Q ss_pred CCCCCEEEEecCCCCCCHHHHH----HHhhcCCCEEEEe--cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEE
Q 003964 191 EHPSRTLFVRNINSNVEDLELR----SLFEQYGDIRTLY--TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLE 260 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLr----elFsqfG~I~~v~--~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe 260 (783)
..++++|||+||++++++++|+ ++|++||.|.+|+ .+++++|| |.+.++|++||+.|||..|.|+.|+|+
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 4568999999999999999977 8999999999998 46778887 999999999999999999999999999
Q ss_pred ecCCCc
Q 003964 261 PSRPGG 266 (783)
Q Consensus 261 ~A~pr~ 266 (783)
+++.+.
T Consensus 86 ~a~~~~ 91 (282)
T 3pgw_A 86 YAKTDS 91 (282)
T ss_pred EeccCc
Confidence 997654
No 5
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.62 E-value=6.9e-15 Score=151.91 Aligned_cols=99 Identities=16% Similarity=0.194 Sum_probs=83.4
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEec---CCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEec
Q 003964 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT---ACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPS 262 (783)
Q Consensus 190 ~e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~~---tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A 262 (783)
.+.+.++|||+|||.++++++|+++|++||+|..|+. ...++|| |.+.++|++|++ ++|..+.|+.|+|.++
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~ 115 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHL 115 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEEC
Confidence 3456899999999999999999999999999999982 2223555 999999999995 9999999999999998
Q ss_pred CCCccccccccccccccCHHHHhhhhccCC
Q 003964 263 RPGGARRNLMQQLNQELEQDEARGFRHQVG 292 (783)
Q Consensus 263 ~pr~~rr~~vqqlsq~~~qde~~~~fsq~G 292 (783)
.. ++.++.+++....+++++.+|.++|
T Consensus 116 ~~---~~l~v~nlp~~~t~~~l~~~f~~~G 142 (292)
T 2ghp_A 116 TE---CTLWMTNFPPSYTQRNIRDLLQDIN 142 (292)
T ss_dssp CS---CEEEEECCCTTCCHHHHHHHHHHTT
T ss_pred CC---CEEEEECCCCCCCHHHHHHHHHHhC
Confidence 53 4468899999999999999999887
No 6
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.61 E-value=1.5e-14 Score=148.89 Aligned_cols=96 Identities=19% Similarity=0.357 Sum_probs=86.2
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEecCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEecCCCccc
Q 003964 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPSRPGGAR 268 (783)
Q Consensus 193 psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A~pr~~r 268 (783)
++++|||+|||.++++++|+++|++|| |..|.. ++++|| |.+.++|++|++.|||..+.|+.|+|+++.+. .
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~--~ 96 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV-DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTD--A 96 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE-ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCS--C
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE-ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCC--C
Confidence 468999999999999999999999999 999874 555665 99999999999999999999999999997654 3
Q ss_pred cccccccccccCHHHHhhhhccCC
Q 003964 269 RNLMQQLNQELEQDEARGFRHQVG 292 (783)
Q Consensus 269 r~~vqqlsq~~~qde~~~~fsq~G 292 (783)
+.++.+++...+.++++.+|..+|
T Consensus 97 ~l~v~nlp~~~t~~~l~~~f~~~G 120 (284)
T 3smz_A 97 LLCVANLPPSLTQQQFEELVRPFG 120 (284)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGS
T ss_pred EEEEcCCCCcCCHHHHHHHHHhcC
Confidence 568899999999999999999887
No 7
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.58 E-value=3.9e-15 Score=132.96 Aligned_cols=72 Identities=31% Similarity=0.498 Sum_probs=67.6
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEecC
Q 003964 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPSR 263 (783)
Q Consensus 193 psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A~ 263 (783)
.+++|||+|||.++|+++|+++|++||+|+.|+ .+++++|| |.+.++|++||+.|||..|.|++|+|++|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 368999999999999999999999999999987 46888887 999999999999999999999999999998
Q ss_pred C
Q 003964 264 P 264 (783)
Q Consensus 264 p 264 (783)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 7
No 8
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.57 E-value=7.4e-14 Score=134.96 Aligned_cols=82 Identities=20% Similarity=0.232 Sum_probs=75.3
Q ss_pred ceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccEEE
Q 003964 623 RTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVAS 702 (783)
Q Consensus 623 RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv~~ 702 (783)
.+||.|+|||..+|.++|++++..+ |....+.++.|..++.+.|||||.|.++++|...++.++|+.+. .+.+.
T Consensus 114 ~~~l~v~nl~~~~~~~~l~~~f~~~--G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~ 187 (198)
T 2yh0_A 114 AHKLFIGGLPNYLNDDQVKELLTSF--GPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG----DKKLL 187 (198)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTB--SCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEET----TEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHc--CCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC----CEEEE
Confidence 4899999999999999999999886 78889999999989999999999999999999999999999886 68899
Q ss_pred EEeeeccc
Q 003964 703 LAYARIQG 710 (783)
Q Consensus 703 v~yAriQG 710 (783)
|.||+-..
T Consensus 188 v~~a~~~~ 195 (198)
T 2yh0_A 188 VQRASVGA 195 (198)
T ss_dssp EEESCCCC
T ss_pred EEECCCCC
Confidence 99997554
No 9
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.57 E-value=4.2e-15 Score=135.47 Aligned_cols=79 Identities=23% Similarity=0.434 Sum_probs=72.0
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEe
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEP 261 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~ 261 (783)
+++.++|||+||++++++++|+++|++||+|.+|+ .+++++|| |.+.++|++||+.|||+.|.|++|+|++
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45679999999999999999999999999999987 46888988 9999999999999999999999999999
Q ss_pred cCCCcccc
Q 003964 262 SRPGGARR 269 (783)
Q Consensus 262 A~pr~~rr 269 (783)
++.+..++
T Consensus 83 a~~~~~~~ 90 (110)
T 3s8s_A 83 DIKGQQRM 90 (110)
T ss_dssp CSTTHHHH
T ss_pred CCCCcHHH
Confidence 98765443
No 10
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.51 E-value=3e-14 Score=129.76 Aligned_cols=76 Identities=21% Similarity=0.431 Sum_probs=67.3
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe---cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEecCCCc
Q 003964 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLY---TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 266 (783)
Q Consensus 194 srtLFVGNLp~dvTEeeLrelFsqfG~I~~v~---~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A~pr~ 266 (783)
.++|||+|||+++++++|+++|++||+|++|+ ..++++|| |.+.++|++||+.|+|..|.|++|+|++++++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 57899999999999999999999999999987 34456666 999999999999999999999999999998876
Q ss_pred ccc
Q 003964 267 ARR 269 (783)
Q Consensus 267 ~rr 269 (783)
.+.
T Consensus 85 ~~~ 87 (115)
T 4f25_A 85 ERE 87 (115)
T ss_dssp C--
T ss_pred ccc
Confidence 443
No 11
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.5e-13 Score=123.14 Aligned_cols=78 Identities=26% Similarity=0.451 Sum_probs=70.0
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe--cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEecCC
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY--TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPSRP 264 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~--~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A~p 264 (783)
..+.++|||+|||.++++++|+++|++||.|+.|+ .+++++|| |.+.++|++||+.||+..|.|++|+|+++++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 45679999999999999999999999999999988 44556666 9999999999999999999999999999988
Q ss_pred Cccc
Q 003964 265 GGAR 268 (783)
Q Consensus 265 r~~r 268 (783)
+..+
T Consensus 99 ~~~~ 102 (109)
T 1x4a_A 99 GRGT 102 (109)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 12
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.50 E-value=8.4e-14 Score=125.88 Aligned_cols=80 Identities=20% Similarity=0.349 Sum_probs=72.0
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEE
Q 003964 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKL 259 (783)
Q Consensus 189 ~~e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkV 259 (783)
....+.++|||+|||.++++++|+++|++||+|+.|+ .+++++|| |.+.++|++||+.|||..|.|++|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3445679999999999999999999999999999987 36778887 99999999999999999999999999
Q ss_pred EecCCCccc
Q 003964 260 EPSRPGGAR 268 (783)
Q Consensus 260 e~A~pr~~r 268 (783)
++++++..+
T Consensus 100 ~~a~~~~~~ 108 (115)
T 2cpz_A 100 QLKRSKNDS 108 (115)
T ss_dssp ECCCCSCCC
T ss_pred EEcCCCCcC
Confidence 999987644
No 13
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.50 E-value=1.5e-15 Score=151.49 Aligned_cols=158 Identities=15% Similarity=0.164 Sum_probs=101.7
Q ss_pred cCCCCCCCchhhhhccccCCCCCCCCCCCCccccccccCCCCcccccCCccccccccccccccCCCCCCCcccCCCCCCC
Q 003964 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLEDDLFDSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYPISNGV 180 (783)
Q Consensus 101 IGnLlpDddddllagv~d~~~~~~~~~~~dD~eDDiF~sgGGmeLe~d~~esls~~~~~~s~~dg~~~nG~~~yg~~n~~ 180 (783)
||||.++.+++.|..+|..+|.+..+...-|.....-.-.+.+++... +.+..+... .++....|..-. ..
T Consensus 20 VgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~--~~A~~Ai~~---~~~~~~~g~~i~-~~--- 90 (213)
T 4f02_A 20 VGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP--ADAERALDT---MNFDVIKGKPVR-IM--- 90 (213)
T ss_dssp EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH--HHHHHHHHH---HTTCEETTEECE-EE---
T ss_pred EeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCH--HHHHHHHHH---hhhhhcCCcccc-cc---
Confidence 999999999999999999998764332222211111111234444422 222222221 112111111000 00
Q ss_pred CCcCCCCCCCCCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe---cCCCcccc----ccCHHHHHHHHHHhCCCeeC
Q 003964 181 GTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY---TACKHRGF----FYDVRAAEAALRALNRSDIN 253 (783)
Q Consensus 181 g~~~ge~~~~e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~---~tgKsrGF----F~d~edAekAI~aLNG~~I~ 253 (783)
.............++|||+||++++++++|+++|++||.|+.|+ ..+.++|| |.+.++|++||+.|||..|.
T Consensus 91 -~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~ 169 (213)
T 4f02_A 91 -WSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN 169 (213)
T ss_dssp -ECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred -cccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 00000001123457999999999999999999999999999987 33446666 99999999999999999999
Q ss_pred CcEeEEEecCCCccc
Q 003964 254 GKRIKLEPSRPGGAR 268 (783)
Q Consensus 254 Gr~IkVe~A~pr~~r 268 (783)
|++|+|++|+++..+
T Consensus 170 g~~i~V~~a~~~~~~ 184 (213)
T 4f02_A 170 DRKVFVGRFKSRKER 184 (213)
T ss_dssp TEECEEEECCCHHHH
T ss_pred CEEEEEEEcCCCccc
Confidence 999999999886543
No 14
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1e-13 Score=122.07 Aligned_cols=77 Identities=21% Similarity=0.326 Sum_probs=70.3
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEec
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPS 262 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A 262 (783)
..+.++|||+|||.++++++|+++|++||+|+.|+ .+++++|| |.+.++|++|++.|||..|.|++|+|+++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 45678999999999999999999999999999988 35677777 99999999999999999999999999999
Q ss_pred CCCcc
Q 003964 263 RPGGA 267 (783)
Q Consensus 263 ~pr~~ 267 (783)
+++..
T Consensus 94 ~~~~~ 98 (100)
T 2do4_A 94 NSGPS 98 (100)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 98764
No 15
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.3e-13 Score=122.37 Aligned_cols=79 Identities=20% Similarity=0.387 Sum_probs=71.6
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEE
Q 003964 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLE 260 (783)
Q Consensus 190 ~e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe 260 (783)
...+.++|||+|||+++++++|+++|++||+|..|+ .+++++|| |.+.++|++||+.|||..|.|++|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345679999999999999999999999999999998 26777777 999999999999999999999999999
Q ss_pred ecCCCccc
Q 003964 261 PSRPGGAR 268 (783)
Q Consensus 261 ~A~pr~~r 268 (783)
+++++..+
T Consensus 91 ~a~~~~~~ 98 (105)
T 1x5u_A 91 KASAHNKN 98 (105)
T ss_dssp ETTTTSCC
T ss_pred ECCCCCcC
Confidence 99987644
No 16
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=9.8e-14 Score=120.74 Aligned_cols=77 Identities=25% Similarity=0.455 Sum_probs=70.1
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEec
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPS 262 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A 262 (783)
.++++|||+|||.++++++|+++|++||+|..|+ .+++++|| |.+.++|++||+.|||..|.|++|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 3578999999999999999999999999999988 35777777 99999999999999999999999999999
Q ss_pred CCCccc
Q 003964 263 RPGGAR 268 (783)
Q Consensus 263 ~pr~~r 268 (783)
+++..+
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 887643
No 17
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.49 E-value=1.4e-13 Score=128.78 Aligned_cols=100 Identities=28% Similarity=0.421 Sum_probs=90.7
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEecCC
Q 003964 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPSRP 264 (783)
Q Consensus 194 srtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A~p 264 (783)
.++|||+|||.++++++|+++|++||+|..|+ .+++++|| |.+.++|++|++.|+|..+.|++|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 58999999999999999999999999999987 36777787 9999999999999999999999999999987
Q ss_pred Ccc----ccccccccccccCHHHHhhhhccCCC
Q 003964 265 GGA----RRNLMQQLNQELEQDEARGFRHQVGS 293 (783)
Q Consensus 265 r~~----rr~~vqqlsq~~~qde~~~~fsq~Gs 293 (783)
... +..++.+++...++++++.+|.++|.
T Consensus 82 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~ 114 (167)
T 1fxl_A 82 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 114 (167)
T ss_dssp CCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSC
T ss_pred CcccCCCCcEEECCCCCcCCHHHHHHHHHhcCC
Confidence 643 34578899999999999999999984
No 18
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.48 E-value=1.1e-13 Score=137.92 Aligned_cols=103 Identities=20% Similarity=0.327 Sum_probs=91.7
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEec
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPS 262 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A 262 (783)
.|.++|||+|||++++|++|+++|++||+|++|+ .+++++|| |.+.++|++||+.+++..+.|+.|+|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 4678999999999999999999999999999997 46788887 99999999999999999999999999999
Q ss_pred CCCc------cccccccccccccCHHHHhhhhccCCCC
Q 003964 263 RPGG------ARRNLMQQLNQELEQDEARGFRHQVGSP 294 (783)
Q Consensus 263 ~pr~------~rr~~vqqlsq~~~qde~~~~fsq~Gsp 294 (783)
.... .++.++.+++...++++++.+|.++|..
T Consensus 93 ~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i 130 (213)
T 4f02_A 93 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 130 (213)
T ss_dssp CCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCE
T ss_pred cccccccccccccceECCcccccHHHHHHHHHhhcCCe
Confidence 7654 2345889999999999999999999854
No 19
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.48 E-value=1.2e-13 Score=121.13 Aligned_cols=75 Identities=21% Similarity=0.398 Sum_probs=69.1
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEecC
Q 003964 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPSR 263 (783)
Q Consensus 193 psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A~ 263 (783)
|+++|||+|||.++++++|+++|++||.|..|+ .+++++|| |.+.++|++|++.|||..+.|+.|+|++++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 468999999999999999999999999999998 34677777 999999999999999999999999999999
Q ss_pred CCcc
Q 003964 264 PGGA 267 (783)
Q Consensus 264 pr~~ 267 (783)
++..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 8763
No 20
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.48 E-value=5.3e-14 Score=126.98 Aligned_cols=99 Identities=19% Similarity=0.372 Sum_probs=83.7
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe--cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEecCCC
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY--TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPSRPG 265 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~--~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A~pr 265 (783)
.++++|||+|||.++++++|+++|++||.|..|. ..++++|| |.+.++|++|++.|||..+.|+.|+|++++++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNAN 85 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 4578999999999999999999999999999998 34556666 99999999999999999999999999999876
Q ss_pred ccccccccccccccCHHHHhhhhccCCCC
Q 003964 266 GARRNLMQQLNQELEQDEARGFRHQVGSP 294 (783)
Q Consensus 266 ~~rr~~vqqlsq~~~qde~~~~fsq~Gsp 294 (783)
... +++.....++++..++.++|..
T Consensus 86 ~~~----~~~~~~~~~~~l~~~~~~~g~~ 110 (115)
T 3lqv_A 86 RAF----QKMDTKKKEEQLKLLKEKYGIN 110 (115)
T ss_dssp HHT----TTSCHHHHHHHHHHHHHHHCCC
T ss_pred hhh----hhhhHhHhHHHHHHHHHHhCCC
Confidence 543 3344555677888888888843
No 21
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=1.4e-13 Score=120.92 Aligned_cols=77 Identities=27% Similarity=0.403 Sum_probs=70.4
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEec
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPS 262 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A 262 (783)
.+.++|||+|||.++++++|+++|++||+|..|+ .+++++|| |.+.++|++||+.|||..|.|++|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4578999999999999999999999999999998 26777777 99999999999999999999999999999
Q ss_pred CCCccc
Q 003964 263 RPGGAR 268 (783)
Q Consensus 263 ~pr~~r 268 (783)
+++..+
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 987643
No 22
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.48 E-value=1.1e-13 Score=117.29 Aligned_cols=73 Identities=25% Similarity=0.433 Sum_probs=67.5
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEecCC
Q 003964 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPSRP 264 (783)
Q Consensus 194 srtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A~p 264 (783)
+.+|||+|||.++++++|+++|++||+|..|+ .+++++|| |.+.++|++|++.|||..+.|++|+|+++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999987 35777877 9999999999999999999999999999998
Q ss_pred Cc
Q 003964 265 GG 266 (783)
Q Consensus 265 r~ 266 (783)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 23
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.48 E-value=9.2e-14 Score=118.80 Aligned_cols=74 Identities=18% Similarity=0.395 Sum_probs=66.1
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEec
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPS 262 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A 262 (783)
.+.++|||+|||.++++++|+++|++||+|..|+ .+++++|| |.+.++|++|++.|||..+.|++|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 3568999999999999999999999999999988 36777887 99999999999999999999999999999
Q ss_pred CCC
Q 003964 263 RPG 265 (783)
Q Consensus 263 ~pr 265 (783)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 875
No 24
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.8e-13 Score=118.78 Aligned_cols=73 Identities=25% Similarity=0.447 Sum_probs=66.7
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEe
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEP 261 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~ 261 (783)
..+.++|||+|||.++++++|+++|++||+|..|+ .+++++|| |.+.++|++|++.|||..|.|++|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 34578999999999999999999999999999998 34667777 9999999999999999999999999999
Q ss_pred cC
Q 003964 262 SR 263 (783)
Q Consensus 262 A~ 263 (783)
|+
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 25
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.7e-13 Score=120.55 Aligned_cols=77 Identities=27% Similarity=0.551 Sum_probs=69.6
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEe
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEP 261 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~ 261 (783)
..+.++|||+|||.++++++|+++|++||+|..|+ .+++++|| |.+.++|++||+ |++..|.|+.|+|++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 34579999999999999999999999999999998 35677777 999999999999 999999999999999
Q ss_pred cCCCccc
Q 003964 262 SRPGGAR 268 (783)
Q Consensus 262 A~pr~~r 268 (783)
++++..+
T Consensus 86 a~~~~~~ 92 (99)
T 2dgs_A 86 AEPRDSK 92 (99)
T ss_dssp CCCCCCC
T ss_pred CCCCccc
Confidence 9987644
No 26
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.47 E-value=3.1e-13 Score=121.95 Aligned_cols=78 Identities=17% Similarity=0.385 Sum_probs=71.0
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEe
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEP 261 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~ 261 (783)
..+.++|||+|||.++++++|+++|++||.|..|+ .+++++|| |.+.++|++||+.|||..|.|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45679999999999999999999999999999987 36777777 9999999999999999999999999999
Q ss_pred cCCCccc
Q 003964 262 SRPGGAR 268 (783)
Q Consensus 262 A~pr~~r 268 (783)
++++..+
T Consensus 92 a~~~~~~ 98 (115)
T 2dgo_A 92 ATRKPPA 98 (115)
T ss_dssp SSCCCCC
T ss_pred ccCCCCC
Confidence 9987654
No 27
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=2.1e-13 Score=120.69 Aligned_cols=80 Identities=29% Similarity=0.486 Sum_probs=69.9
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe---cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEec
Q 003964 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY---TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPS 262 (783)
Q Consensus 190 ~e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~---~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A 262 (783)
.+.+.++|||+|||.++++++|+++|++||+|+.|+ ....++|| |.+.++|++||+.|||..|.|++|+|+++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 345679999999999999999999999999999988 22334555 99999999999999999999999999999
Q ss_pred CCCcccc
Q 003964 263 RPGGARR 269 (783)
Q Consensus 263 ~pr~~rr 269 (783)
+++..++
T Consensus 91 ~~~~~~~ 97 (103)
T 2cqi_A 91 TTPSSQK 97 (103)
T ss_dssp CCTTCCC
T ss_pred CCCcccc
Confidence 9876543
No 28
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.3e-13 Score=122.19 Aligned_cols=78 Identities=29% Similarity=0.502 Sum_probs=70.2
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEe
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEP 261 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~ 261 (783)
..+.++|||+|||.++++++|+++|++||+|..|. .+++++|| |.+.++|++||+.|||..|.|+.|+|++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45579999999999999999999999999999998 34677777 9999999999999999999999999999
Q ss_pred cCCCccc
Q 003964 262 SRPGGAR 268 (783)
Q Consensus 262 A~pr~~r 268 (783)
++++..+
T Consensus 90 a~~~~~~ 96 (103)
T 2dnm_A 90 ARYGRRD 96 (103)
T ss_dssp CSSCCSC
T ss_pred CCcCCCC
Confidence 9876543
No 29
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.4e-13 Score=121.93 Aligned_cols=78 Identities=22% Similarity=0.428 Sum_probs=71.0
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEe
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEP 261 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~ 261 (783)
..+.++|||+|||.++++++|+++|++||+|..|+ .+++++|| |.+.++|++||+.|||..|.|++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 45679999999999999999999999999999988 35777877 9999999999999999999999999999
Q ss_pred cCCCccc
Q 003964 262 SRPGGAR 268 (783)
Q Consensus 262 A~pr~~r 268 (783)
++++..+
T Consensus 92 a~~~~~~ 98 (103)
T 2cq0_A 92 AKPSTNS 98 (103)
T ss_dssp SSCCCCS
T ss_pred CCCCCCC
Confidence 9987643
No 30
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=2.6e-13 Score=119.15 Aligned_cols=76 Identities=21% Similarity=0.427 Sum_probs=68.3
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-cCCCcccc--ccCHHHHHHHHHHhCCCeeC--CcEeEEEecCCCc
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-TACKHRGF--FYDVRAAEAALRALNRSDIN--GKRIKLEPSRPGG 266 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-~tgKsrGF--F~d~edAekAI~aLNG~~I~--Gr~IkVe~A~pr~ 266 (783)
.+.++|||+|||.++++++|+++|++||+|+.|+ .+++..+| |.+.++|++|++.|||..|. |++|+|++++++.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP 94 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCC
Confidence 4578999999999999999999999999999998 44444555 99999999999999999999 9999999999875
Q ss_pred c
Q 003964 267 A 267 (783)
Q Consensus 267 ~ 267 (783)
.
T Consensus 95 ~ 95 (97)
T 1why_A 95 S 95 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 31
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.4e-13 Score=121.45 Aligned_cols=78 Identities=31% Similarity=0.551 Sum_probs=70.3
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEec
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPS 262 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A 262 (783)
.+.++|||+|||.++++++|+++|++||+|+.|+ .+++++|| |.+.++|++||+.|||..|.|++|+|+++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 4578999999999999999999999999999988 34667777 99999999999999999999999999999
Q ss_pred CCCcccc
Q 003964 263 RPGGARR 269 (783)
Q Consensus 263 ~pr~~rr 269 (783)
+++..+.
T Consensus 90 ~~~~~~~ 96 (102)
T 2cqb_A 90 KPMRIKE 96 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9876443
No 32
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.47 E-value=1.6e-13 Score=116.83 Aligned_cols=72 Identities=32% Similarity=0.571 Sum_probs=66.3
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEec
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPS 262 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A 262 (783)
.+.++|||+|||.++++++|+++|++||+|..|. .+++++|| |.+.++|++|++.|||..+.|++|+|++|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4579999999999999999999999999999997 35666776 99999999999999999999999999998
Q ss_pred C
Q 003964 263 R 263 (783)
Q Consensus 263 ~ 263 (783)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 33
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=1.3e-13 Score=124.85 Aligned_cols=80 Identities=18% Similarity=0.238 Sum_probs=69.0
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-cCCCcccc--ccCHHHHHHHHHHhCCC--eeCCcEeEEEecC
Q 003964 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-TACKHRGF--FYDVRAAEAALRALNRS--DINGKRIKLEPSR 263 (783)
Q Consensus 189 ~~e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-~tgKsrGF--F~d~edAekAI~aLNG~--~I~Gr~IkVe~A~ 263 (783)
....++++|||+|||+++++++|+++|++||+|+.|. ...|..|| |.+.++|++|++.|++. .|.|++|+|++++
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 3456789999999999999999999999999999998 44455666 99999999999998765 4899999999998
Q ss_pred CCccc
Q 003964 264 PGGAR 268 (783)
Q Consensus 264 pr~~r 268 (783)
++..+
T Consensus 90 ~~~~~ 94 (104)
T 1wex_A 90 SKRIT 94 (104)
T ss_dssp SSSCC
T ss_pred Ccccc
Confidence 76543
No 34
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.47 E-value=4.5e-14 Score=123.88 Aligned_cols=75 Identities=20% Similarity=0.362 Sum_probs=66.7
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhcCC-CEEEEe-----cCCCcccc----ccCHHHHHHHHHHhC-CCeeCCcEeEEEec
Q 003964 194 SRTLFVRNINSNVEDLELRSLFEQYG-DIRTLY-----TACKHRGF----FYDVRAAEAALRALN-RSDINGKRIKLEPS 262 (783)
Q Consensus 194 srtLFVGNLp~dvTEeeLrelFsqfG-~I~~v~-----~tgKsrGF----F~d~edAekAI~aLN-G~~I~Gr~IkVe~A 262 (783)
+++|||+|||+++||++|+++|++|| +|++|+ .++++||| |.+.++|++||+.++ +..+.||+|+|++|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999999999999999999 799887 45788887 999999999999874 56799999999999
Q ss_pred CCCccc
Q 003964 263 RPGGAR 268 (783)
Q Consensus 263 ~pr~~r 268 (783)
+|+.+.
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 987643
No 35
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.47 E-value=1.2e-13 Score=119.55 Aligned_cols=78 Identities=23% Similarity=0.331 Sum_probs=70.7
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe---cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEecC
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY---TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPSR 263 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~---~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A~ 263 (783)
..+.++|||+|||.++++++|+++|++||+|..|+ .+++++|| |.+.++|++|++.|||..|.|++|+|++++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 34578999999999999999999999999999988 46777877 999999999999999999999999999998
Q ss_pred CCccc
Q 003964 264 PGGAR 268 (783)
Q Consensus 264 pr~~r 268 (783)
++...
T Consensus 85 ~~~~~ 89 (92)
T 2dgv_A 85 NASGP 89 (92)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87543
No 36
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.46 E-value=1.4e-13 Score=123.32 Aligned_cols=78 Identities=26% Similarity=0.428 Sum_probs=70.5
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEe
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEP 261 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~ 261 (783)
..++++|||+|||.++++++|+++|++||+|..|+ .+++++|| |.+.++|++||+.|||..|.|++|+|++
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45578999999999999999999999999999998 35667777 9999999999999999999999999999
Q ss_pred cCCCccc
Q 003964 262 SRPGGAR 268 (783)
Q Consensus 262 A~pr~~r 268 (783)
++++..+
T Consensus 103 a~~~~~~ 109 (110)
T 1oo0_B 103 CFVKGPK 109 (110)
T ss_dssp SEESSCC
T ss_pred cccCCCC
Confidence 9887654
No 37
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.46 E-value=2.2e-13 Score=120.87 Aligned_cols=78 Identities=22% Similarity=0.300 Sum_probs=70.5
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe----cCCCcccc----ccCHHHHHHHHHHhCCCeeCC---cEeEEE
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY----TACKHRGF----FYDVRAAEAALRALNRSDING---KRIKLE 260 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~----~tgKsrGF----F~d~edAekAI~aLNG~~I~G---r~IkVe 260 (783)
.+.++|||+|||.++++++|+++|++||+|..|+ .+++++|| |.+.++|++||+.|||..+.| +.|+|+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 4579999999999999999999999999999988 45667777 999999999999999999998 999999
Q ss_pred ecCCCcccc
Q 003964 261 PSRPGGARR 269 (783)
Q Consensus 261 ~A~pr~~rr 269 (783)
+++++..++
T Consensus 93 ~a~~~~~~~ 101 (105)
T 2dnh_A 93 FADTDKESG 101 (105)
T ss_dssp ESCSSCCCS
T ss_pred ECccCcccC
Confidence 999876543
No 38
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=9.3e-14 Score=127.02 Aligned_cols=79 Identities=22% Similarity=0.309 Sum_probs=68.6
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-cCCCcccc--ccCHHHHHHHHHHhCC--CeeCCcEeEEEecCCC
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-TACKHRGF--FYDVRAAEAALRALNR--SDINGKRIKLEPSRPG 265 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-~tgKsrGF--F~d~edAekAI~aLNG--~~I~Gr~IkVe~A~pr 265 (783)
..+.++|||+|||++++|++|+++|++||+|++|+ ...|..|| |.+.++|++||+.|++ .+|.||+|+|++|+++
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence 34578999999999999999999999999999998 44455566 9999999999998864 7899999999999887
Q ss_pred cccc
Q 003964 266 GARR 269 (783)
Q Consensus 266 ~~rr 269 (783)
..+.
T Consensus 93 ~~~~ 96 (105)
T 1sjq_A 93 ELKT 96 (105)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 6443
No 39
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.8e-13 Score=121.16 Aligned_cols=79 Identities=22% Similarity=0.406 Sum_probs=71.2
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe---cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEecC
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY---TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPSR 263 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~---~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A~ 263 (783)
..+.++|||+|||+++++++|+++|++||+|..|+ .+++++|| |.+.++|++||+.|||..|.|++|+|++++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 44679999999999999999999999999999988 34677777 999999999999999999999999999999
Q ss_pred CCcccc
Q 003964 264 PGGARR 269 (783)
Q Consensus 264 pr~~rr 269 (783)
++..++
T Consensus 92 ~~~~~~ 97 (103)
T 2d9p_A 92 RKEERQ 97 (103)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 876543
No 40
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=4.2e-13 Score=118.79 Aligned_cols=79 Identities=24% Similarity=0.421 Sum_probs=69.4
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe---cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEec
Q 003964 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY---TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPS 262 (783)
Q Consensus 190 ~e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~---~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A 262 (783)
...+.++|||+|||.++++++|+++|++||+|..|+ ...+++|| |.+.++|++||+.|||..|.|+.|+|+++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 345679999999999999999999999999999988 22335665 99999999999999999999999999999
Q ss_pred CCCccc
Q 003964 263 RPGGAR 268 (783)
Q Consensus 263 ~pr~~r 268 (783)
+++..+
T Consensus 91 ~~~~~~ 96 (103)
T 2cq3_A 91 TARVMT 96 (103)
T ss_dssp CSSCCC
T ss_pred ccCCCC
Confidence 987643
No 41
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=2.8e-13 Score=121.03 Aligned_cols=79 Identities=22% Similarity=0.436 Sum_probs=71.2
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhC------CCeeCCc
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALN------RSDINGK 255 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLN------G~~I~Gr 255 (783)
..+.++|||+|||+++++++|+++|++||+|..|+ .+++++|| |.+.++|++||+.|| +..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 45678999999999999999999999999999998 34677777 999999999999999 9999999
Q ss_pred EeEEEecCCCcccc
Q 003964 256 RIKLEPSRPGGARR 269 (783)
Q Consensus 256 ~IkVe~A~pr~~rr 269 (783)
+|+|++++++..+.
T Consensus 92 ~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 92 QLKVDLAVTRDEAA 105 (111)
T ss_dssp EEEEECCCCCCCCC
T ss_pred EEEEEECCCCccCC
Confidence 99999999876543
No 42
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.1e-13 Score=120.55 Aligned_cols=77 Identities=19% Similarity=0.369 Sum_probs=69.3
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEE-e-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEe
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTL-Y-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEP 261 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v-~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~ 261 (783)
.++++|||+|||.++++++|+++|++||.|..| + .+++++|| |.+.++|++||+.|||..|.|++|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 357899999999999999999999999999877 5 35667777 9999999999999999999999999999
Q ss_pred cCCCccc
Q 003964 262 SRPGGAR 268 (783)
Q Consensus 262 A~pr~~r 268 (783)
++++..+
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9887644
No 43
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=1.5e-13 Score=120.44 Aligned_cols=77 Identities=22% Similarity=0.416 Sum_probs=69.0
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEec--------CCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEE
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT--------ACKHRGF----FYDVRAAEAALRALNRSDINGKRIKL 259 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~~--------tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkV 259 (783)
.+.++|||+|||+++++++|+++|++||+|..|+. +++++|| |.+.++|++||+.|||..|.|++|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 45789999999999999999999999999999881 3367777 99999999999999999999999999
Q ss_pred EecCCCccc
Q 003964 260 EPSRPGGAR 268 (783)
Q Consensus 260 e~A~pr~~r 268 (783)
++++++..+
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999886543
No 44
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2.2e-13 Score=118.32 Aligned_cols=74 Identities=27% Similarity=0.483 Sum_probs=68.0
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEe
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEP 261 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~ 261 (783)
..+.++|||+|||.++++++|+++|++||+|..|+ .+++++|| |.+.++|++|++.|||..|.|++|+|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 45678999999999999999999999999999988 34677777 9999999999999999999999999999
Q ss_pred cCC
Q 003964 262 SRP 264 (783)
Q Consensus 262 A~p 264 (783)
+++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 976
No 45
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=2.9e-13 Score=120.20 Aligned_cols=78 Identities=29% Similarity=0.536 Sum_probs=70.5
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEec------CCCcccc----ccCHHHHHHHHHHh-CCCeeCCcEeEE
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT------ACKHRGF----FYDVRAAEAALRAL-NRSDINGKRIKL 259 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~~------tgKsrGF----F~d~edAekAI~aL-NG~~I~Gr~IkV 259 (783)
+.+.++|||+|||.++++++|+++|++||+|+.|+. +++++|| |.+.++|++||+.| |+..|.|++|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 456799999999999999999999999999999982 5666777 99999999999999 999999999999
Q ss_pred EecCCCccc
Q 003964 260 EPSRPGGAR 268 (783)
Q Consensus 260 e~A~pr~~r 268 (783)
++++++..+
T Consensus 92 ~~a~~~~~~ 100 (107)
T 2cph_A 92 EWADSEVTV 100 (107)
T ss_dssp EECCCCCCC
T ss_pred EeCCCCCCC
Confidence 999987643
No 46
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=2.3e-13 Score=118.35 Aligned_cols=77 Identities=29% Similarity=0.426 Sum_probs=69.3
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEecCCCcccc--ccCHHHHHHHHHHhCCCeeCCcEeEEEecCCCccc
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGF--FYDVRAAEAALRALNRSDINGKRIKLEPSRPGGAR 268 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~~tgKsrGF--F~d~edAekAI~aLNG~~I~Gr~IkVe~A~pr~~r 268 (783)
..+.++|||+|||.++++++|+++|++||.|..|+.. +..+| |.+.++|++|++.|||..|.|++|+|++++++..+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 85 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRT 85 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCCC
Confidence 4567999999999999999999999999999999843 34777 99999999999999999999999999999887543
No 47
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.4e-13 Score=122.35 Aligned_cols=77 Identities=22% Similarity=0.449 Sum_probs=69.8
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEe
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEP 261 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~ 261 (783)
..++++|||+|||.++++++|+++|++||+|..|. .+++++|| |.+.++|++|++.|||..|.|+.|+|++
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 34578999999999999999999999999999988 34777887 9999999999999999999999999999
Q ss_pred cCCCcc
Q 003964 262 SRPGGA 267 (783)
Q Consensus 262 A~pr~~ 267 (783)
|+++..
T Consensus 100 a~~~~~ 105 (106)
T 1p27_B 100 CFVRGP 105 (106)
T ss_dssp SEESSC
T ss_pred ecCCCC
Confidence 987653
No 48
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.45 E-value=1.5e-13 Score=119.52 Aligned_cols=75 Identities=27% Similarity=0.395 Sum_probs=68.2
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEe
Q 003964 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEP 261 (783)
Q Consensus 190 ~e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~ 261 (783)
.+.+.++|||+|||.++++++|+++|++||+|+.|+ ..++++|| |.+.++|++|++.|||..|.|++|+|++
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 345679999999999999999999999999999988 34667777 9999999999999999999999999999
Q ss_pred cCC
Q 003964 262 SRP 264 (783)
Q Consensus 262 A~p 264 (783)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 975
No 49
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=3.5e-13 Score=121.63 Aligned_cols=80 Identities=19% Similarity=0.286 Sum_probs=69.0
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-cCCCcccc--ccCHHHHHHHHHHh--CCCeeCCcEeEEEecCC
Q 003964 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-TACKHRGF--FYDVRAAEAALRAL--NRSDINGKRIKLEPSRP 264 (783)
Q Consensus 190 ~e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-~tgKsrGF--F~d~edAekAI~aL--NG~~I~Gr~IkVe~A~p 264 (783)
...++++|||+|||+++++++|+++|++||.|++|. ...|..|| |.+.++|++|++.| ++..+.||+|+|++|++
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 90 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNH 90 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCc
Confidence 345789999999999999999999999999999998 34455566 99999999999987 46789999999999998
Q ss_pred Ccccc
Q 003964 265 GGARR 269 (783)
Q Consensus 265 r~~rr 269 (783)
+..++
T Consensus 91 ~~~~~ 95 (101)
T 2cq1_A 91 KELKT 95 (101)
T ss_dssp SSCCC
T ss_pred ccCcC
Confidence 76443
No 50
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.45 E-value=1.7e-13 Score=124.30 Aligned_cols=76 Identities=20% Similarity=0.263 Sum_probs=67.3
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-cCCCcccc--ccCHHHHHHHHHHhCCCe--eCCcEeEEEecCCC
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-TACKHRGF--FYDVRAAEAALRALNRSD--INGKRIKLEPSRPG 265 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-~tgKsrGF--F~d~edAekAI~aLNG~~--I~Gr~IkVe~A~pr 265 (783)
.+|+++|||+|||+++++++|+++|++||+|++|+ ...|..|| |.+.++|.+||+.|++.. |.||+|+|++|+++
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 35789999999999999999999999999999998 34455556 999999999999999886 78999999999875
Q ss_pred c
Q 003964 266 G 266 (783)
Q Consensus 266 ~ 266 (783)
.
T Consensus 98 ~ 98 (100)
T 3r27_A 98 K 98 (100)
T ss_dssp C
T ss_pred c
Confidence 4
No 51
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.8e-13 Score=120.82 Aligned_cols=77 Identities=23% Similarity=0.533 Sum_probs=69.6
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEec
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPS 262 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A 262 (783)
.+.++|||+|||.++++++|+++|++||+|+.|+ .+++++|| |.+.++|++||+.|||..|.|++|+|+++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4578999999999999999999999999999988 25567776 99999999999999999999999999999
Q ss_pred CCCccc
Q 003964 263 RPGGAR 268 (783)
Q Consensus 263 ~pr~~r 268 (783)
+++..+
T Consensus 90 ~~~~~~ 95 (102)
T 1x5s_A 90 GKSSDN 95 (102)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 887644
No 52
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.44 E-value=2.1e-13 Score=121.20 Aligned_cols=78 Identities=26% Similarity=0.490 Sum_probs=70.3
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCee---CCcEeE
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDI---NGKRIK 258 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I---~Gr~Ik 258 (783)
+.+.++|||+|||.++++++|+++|++||+|..|+ .+++++|| |.+.++|++||+.|||..+ .|++|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 45679999999999999999999999999999998 35677777 9999999999999999998 899999
Q ss_pred EEecCCCccc
Q 003964 259 LEPSRPGGAR 268 (783)
Q Consensus 259 Ve~A~pr~~r 268 (783)
|++++++..+
T Consensus 90 v~~a~~~~~~ 99 (106)
T 2dgp_A 90 VKPADSESRG 99 (106)
T ss_dssp EEECCCCSCC
T ss_pred EEECCccccc
Confidence 9999887643
No 53
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=2.5e-13 Score=117.65 Aligned_cols=76 Identities=34% Similarity=0.516 Sum_probs=68.7
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEecCCCcccc--ccCHHHHHHHHHHhCCCeeCCcEeEEEecCCCccc
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGF--FYDVRAAEAALRALNRSDINGKRIKLEPSRPGGAR 268 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~~tgKsrGF--F~d~edAekAI~aLNG~~I~Gr~IkVe~A~pr~~r 268 (783)
.+.++|||+|||.++++++|+++|++||+|..|+.. +..|| |.+.++|++|++.|||..|.|++|+|++++++..+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 83 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKA 83 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCCC
Confidence 457899999999999999999999999999999854 45566 99999999999999999999999999999887643
No 54
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.44 E-value=2.1e-14 Score=135.15 Aligned_cols=150 Identities=20% Similarity=0.235 Sum_probs=103.4
Q ss_pred cCCCCCCCchhhhhccccCCCCCCCCCCCCccccccccCCCCcccccCCccccccccccccccCCCCCCCcccCCCCCCC
Q 003964 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLEDDLFDSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYPISNGV 180 (783)
Q Consensus 101 IGnLlpDddddllagv~d~~~~~~~~~~~dD~eDDiF~sgGGmeLe~d~~esls~~~~~~s~~dg~~~nG~~~yg~~n~~ 180 (783)
||||.++.+++.|..+|..+|.+.......|.+.....-.+.+++... +.+..+.......+|...... +.
T Consensus 8 v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~--~~a~~A~~~~~~~~g~~i~v~--~~----- 78 (167)
T 2cjk_A 8 IGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKP--SSVDEVVKTQHILDGKVIDPK--RA----- 78 (167)
T ss_dssp ECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESST--HHHHHHHHSCCEETTEECCCE--EC-----
T ss_pred EeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccH--HHHHHHHhcccccCCeEcccc--cc-----
Confidence 999999999999999999998765443333322222222344555433 222222222223333211111 00
Q ss_pred CCcCCCCCCCCCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCe
Q 003964 181 GTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSD 251 (783)
Q Consensus 181 g~~~ge~~~~e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~ 251 (783)
.......+.++|||+|||.++++++|+++|++||.|..|+ .+++++|| |.+.++|++|++ ++|..
T Consensus 79 -----~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~ 152 (167)
T 2cjk_A 79 -----IPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFID 152 (167)
T ss_dssp -----CCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEEC
T ss_pred -----cchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEE
Confidence 0000123467999999999999999999999999999987 35778887 999999999998 89999
Q ss_pred eCCcEeEEEecCCC
Q 003964 252 INGKRIKLEPSRPG 265 (783)
Q Consensus 252 I~Gr~IkVe~A~pr 265 (783)
+.|++|+|++|+|+
T Consensus 153 ~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 153 FKDRKIEIKRAEPR 166 (167)
T ss_dssp SSSSCEEEEECCCC
T ss_pred eCCeEEEEeecCCC
Confidence 99999999999986
No 55
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.44 E-value=1.2e-13 Score=120.61 Aligned_cols=78 Identities=27% Similarity=0.431 Sum_probs=71.4
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEecCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEecCCCc
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 266 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A~pr~ 266 (783)
+.+.++|||+|||.++++++|+++|++||.|+.+..+++++|| |.+.++|++|++.|+|..|.|++|+|++++++.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 4567999999999999999999999999999888667888887 999999999999999999999999999998876
Q ss_pred cc
Q 003964 267 AR 268 (783)
Q Consensus 267 ~r 268 (783)
.+
T Consensus 93 ~~ 94 (96)
T 1fjc_A 93 GT 94 (96)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 56
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=3.7e-13 Score=118.73 Aligned_cols=78 Identities=28% Similarity=0.471 Sum_probs=69.4
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEecCCC
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPSRPG 265 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A~pr 265 (783)
..+.++|||+|||.++++++|+++|++||.|.-++ .+++++|| |.+.++|++||+.|||..|.|+.|+|++++++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 45679999999999999999999999999995544 46777777 99999999999999999999999999999887
Q ss_pred ccc
Q 003964 266 GAR 268 (783)
Q Consensus 266 ~~r 268 (783)
..+
T Consensus 92 ~~~ 94 (101)
T 2fc9_A 92 GSP 94 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 57
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=3.9e-13 Score=118.37 Aligned_cols=75 Identities=19% Similarity=0.310 Sum_probs=66.6
Q ss_pred CCCEEEEecCCCCCCHHHHH----HHhhcCCCEEEEec----CCCcccc--ccCHHHHHHHHHHhCCCeeCCcEeEEEec
Q 003964 193 PSRTLFVRNINSNVEDLELR----SLFEQYGDIRTLYT----ACKHRGF--FYDVRAAEAALRALNRSDINGKRIKLEPS 262 (783)
Q Consensus 193 psrtLFVGNLp~dvTEeeLr----elFsqfG~I~~v~~----tgKsrGF--F~d~edAekAI~aLNG~~I~Gr~IkVe~A 262 (783)
+.++|||+|||+++++++|+ ++|++||+|.+|+. ..+.+|| |.+.++|++||+.|||..|.|++|+|++|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 46899999999999999999 99999999999982 1244555 99999999999999999999999999999
Q ss_pred CCCcc
Q 003964 263 RPGGA 267 (783)
Q Consensus 263 ~pr~~ 267 (783)
+++..
T Consensus 88 ~~~~~ 92 (96)
T 2dgx_A 88 TGASG 92 (96)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87653
No 58
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=2.7e-13 Score=119.21 Aligned_cols=76 Identities=17% Similarity=0.247 Sum_probs=67.0
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEecCCC
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPSRPG 265 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A~pr 265 (783)
....++|||+|||+++++++|+++|++||.|. +. .+++++|| |.+.++|++||+.|||..|.|++|+|++++++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 34578999999999999999999999999995 44 44566666 99999999999999999999999999999887
Q ss_pred cc
Q 003964 266 GA 267 (783)
Q Consensus 266 ~~ 267 (783)
..
T Consensus 95 ~~ 96 (97)
T 2e5j_A 95 RD 96 (97)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 59
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.43 E-value=3e-13 Score=115.64 Aligned_cols=75 Identities=20% Similarity=0.383 Sum_probs=66.4
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEec-----C-CCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEec
Q 003964 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-----A-CKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPS 262 (783)
Q Consensus 193 psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~~-----t-gKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A 262 (783)
..++|||+|||.++++++|+++|++||+|..|.. + ++++|| |.+.++|++|++.|||..+.|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 3589999999999999999999999999999882 1 225666 99999999999999999999999999999
Q ss_pred CCCcc
Q 003964 263 RPGGA 267 (783)
Q Consensus 263 ~pr~~ 267 (783)
++...
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 60
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.43 E-value=3.9e-13 Score=134.71 Aligned_cols=102 Identities=17% Similarity=0.201 Sum_probs=85.4
Q ss_pred CCCEEEEecCC-CCCCHHHHHHHhhcCCCEEEEecCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEecCCCcc
Q 003964 193 PSRTLFVRNIN-SNVEDLELRSLFEQYGDIRTLYTACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 267 (783)
Q Consensus 193 psrtLFVGNLp-~dvTEeeLrelFsqfG~I~~v~~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A~pr~~ 267 (783)
++++|||+||+ +++++++|+++|++||.|.+|+.....+|| |.+.++|++||+.|||..+.|++|+|.+++.+..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~ 82 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAI 82 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCcc
Confidence 46899999999 899999999999999999999844434555 9999999999999999999999999999863210
Q ss_pred -----------------------------------------ccccccccccccCHHHHhhhhccCCCC
Q 003964 268 -----------------------------------------RRNLMQQLNQELEQDEARGFRHQVGSP 294 (783)
Q Consensus 268 -----------------------------------------rr~~vqqlsq~~~qde~~~~fsq~Gsp 294 (783)
+..++.+++...++++++.+|.++|..
T Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v 150 (205)
T 3tyt_A 83 MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVK 150 (205)
T ss_dssp CCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCC
T ss_pred CCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCc
Confidence 013456777788899999999999854
No 61
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=7.5e-13 Score=119.04 Aligned_cols=78 Identities=19% Similarity=0.233 Sum_probs=69.6
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEec
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPS 262 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A 262 (783)
..+.++|||+||+.++++++|+++|++||+|+.|+ .+++++|| |.+.++|++||+.|||..|.|+.|+|+++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 34578999999999999999999999999999987 45667777 99999999999999999999999999999
Q ss_pred CCCccc
Q 003964 263 RPGGAR 268 (783)
Q Consensus 263 ~pr~~r 268 (783)
+....+
T Consensus 92 ~~~~~~ 97 (114)
T 2do0_A 92 ERALPK 97 (114)
T ss_dssp SCCCCC
T ss_pred ccCCCC
Confidence 865443
No 62
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=5.1e-13 Score=118.68 Aligned_cols=77 Identities=23% Similarity=0.463 Sum_probs=69.1
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cC-CCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEE
Q 003964 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TA-CKHRGF----FYDVRAAEAALRALNRSDINGKRIKL 259 (783)
Q Consensus 190 ~e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~t-gKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkV 259 (783)
...+.++|||+|||+++++++|+++|++|| |..|+ .+ ++++|| |.+.++|++|| .||+..|.|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 345679999999999999999999999999 99998 22 777887 99999999999 89999999999999
Q ss_pred EecCCCccc
Q 003964 260 EPSRPGGAR 268 (783)
Q Consensus 260 e~A~pr~~r 268 (783)
++++++..+
T Consensus 89 ~~a~~~~~~ 97 (104)
T 1wi8_A 89 DVADQAQDK 97 (104)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999987644
No 63
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.43 E-value=3.2e-13 Score=122.02 Aligned_cols=78 Identities=26% Similarity=0.483 Sum_probs=70.6
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEE
Q 003964 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKL 259 (783)
Q Consensus 189 ~~e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkV 259 (783)
....+.++|||+|||.++++++|+++|++||+|..|+ .+++++|| |.+.++|++|++.|||..|.|++|+|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3455679999999999999999999999999999987 35677777 99999999999999999999999999
Q ss_pred EecCCCc
Q 003964 260 EPSRPGG 266 (783)
Q Consensus 260 e~A~pr~ 266 (783)
++++++.
T Consensus 101 ~~a~~k~ 107 (108)
T 2jrs_A 101 GHVTERT 107 (108)
T ss_dssp ECSCSSC
T ss_pred EEcccCC
Confidence 9998864
No 64
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=4e-13 Score=120.83 Aligned_cols=79 Identities=22% Similarity=0.384 Sum_probs=70.3
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhcCCCEE--------EEe-----cCCCcccc----ccCHHHHHHHHHHhCCCee
Q 003964 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIR--------TLY-----TACKHRGF----FYDVRAAEAALRALNRSDI 252 (783)
Q Consensus 190 ~e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~--------~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I 252 (783)
.+.+.++|||+|||.++++++|+++|++||.|. .|+ .+++++|| |.+.++|++||+.|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345689999999999999999999999999998 455 45677777 9999999999999999999
Q ss_pred CCcEeEEEecCCCccc
Q 003964 253 NGKRIKLEPSRPGGAR 268 (783)
Q Consensus 253 ~Gr~IkVe~A~pr~~r 268 (783)
.|++|+|++++++..+
T Consensus 91 ~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTEECEEECSSCCCCS
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999999987643
No 65
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.43 E-value=6.1e-13 Score=118.18 Aligned_cols=77 Identities=27% Similarity=0.504 Sum_probs=69.2
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEecCCCcccc--ccCHHHHHHHHHHhCCCeeCCcEeEEEecCCCcccc
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGF--FYDVRAAEAALRALNRSDINGKRIKLEPSRPGGARR 269 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~~tgKsrGF--F~d~edAekAI~aLNG~~I~Gr~IkVe~A~pr~~rr 269 (783)
.+.++|||+|||+++++++|+++|++||+|..|+.. +..+| |.+.++|++||+.|||..|.|+.|+|++++++..++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 87 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKR 87 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcccc
Confidence 457899999999999999999999999999999743 44677 999999999999999999999999999999876544
No 66
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.43 E-value=3.5e-13 Score=125.46 Aligned_cols=80 Identities=33% Similarity=0.539 Sum_probs=71.8
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEE
Q 003964 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLE 260 (783)
Q Consensus 190 ~e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe 260 (783)
...+.++|||+||+.++++++|+++|++||+|++|+ .+++++|| |.+.++|++||+.|||..|.|++|+|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 345679999999999999999999999999999987 35677777 999999999999999999999999999
Q ss_pred ecCCCcccc
Q 003964 261 PSRPGGARR 269 (783)
Q Consensus 261 ~A~pr~~rr 269 (783)
+++++..+.
T Consensus 118 ~a~~~~~~~ 126 (139)
T 1u6f_A 118 LAASGHQRP 126 (139)
T ss_dssp ESSCCCCCC
T ss_pred ECCCCCCCC
Confidence 999876543
No 67
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.43 E-value=2.5e-13 Score=127.43 Aligned_cols=78 Identities=23% Similarity=0.342 Sum_probs=69.8
Q ss_pred CCCCCEEEEecCCCCCCHHHHH----HHhhcCCCEEEEe--cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEE
Q 003964 191 EHPSRTLFVRNINSNVEDLELR----SLFEQYGDIRTLY--TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLE 260 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLr----elFsqfG~I~~v~--~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe 260 (783)
..++++|||+||++++++++|+ ++|++||+|.+|. .+++++|| |.+.++|++||+.|||..|.|++|+|+
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 3567899999999999999876 6999999999988 45677887 999999999999999999999999999
Q ss_pred ecCCCccc
Q 003964 261 PSRPGGAR 268 (783)
Q Consensus 261 ~A~pr~~r 268 (783)
||+++..+
T Consensus 106 ~a~~~~~~ 113 (127)
T 2a3j_A 106 FSETPQSQ 113 (127)
T ss_dssp ECCCCCHH
T ss_pred EccCcchh
Confidence 99987643
No 68
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.43 E-value=3.6e-13 Score=118.62 Aligned_cols=74 Identities=27% Similarity=0.400 Sum_probs=67.3
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEE--------Ee-----cCCCcccc----ccCHHHHHHHHHHhCCCee
Q 003964 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRT--------LY-----TACKHRGF----FYDVRAAEAALRALNRSDI 252 (783)
Q Consensus 190 ~e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~--------v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I 252 (783)
...+.++|||+||+.++++++|+++|++||.|.. |+ .+++++|| |.+.++|++||+.|||..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3456799999999999999999999999999988 66 45777887 9999999999999999999
Q ss_pred CCcEeEEEecC
Q 003964 253 NGKRIKLEPSR 263 (783)
Q Consensus 253 ~Gr~IkVe~A~ 263 (783)
.|++|+|++|+
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999985
No 69
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.43 E-value=5.2e-14 Score=135.83 Aligned_cols=167 Identities=19% Similarity=0.251 Sum_probs=100.6
Q ss_pred CCccchhh-cCCCCCCCchhhhhccccCCCCCCCCCCCCccccccccCCCCcccccCCcccccccccc-ccccCCCCCCC
Q 003964 93 GPLAGVET-IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLEDDLFDSGGGMELEFEPHESLSIGVSK-LNISDGIAGTG 170 (783)
Q Consensus 93 ~s~ee~e~-IGnLlpDddddllagv~d~~~~~~~~~~~dD~eDDiF~sgGGmeLe~d~~esls~~~~~-~s~~dg~~~nG 170 (783)
+..+.-.. ||||.++.+++.|..+|..+|.+..+....|.+.....-.+.+++... +.+..+... -...+|...
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~--~~A~~A~~~~~~~~~g~~l-- 84 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV--EEVDAAMNARPHKVDGRVV-- 84 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH--HHHHHHHHTCSCEETTEEC--
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCH--HHHHHHHhcCCCEECCEEe--
Confidence 33333444 999999999999999999998764332222211111111344455422 221111111 011111110
Q ss_pred cccCCCCCCCCCcCCCCCCCCCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHH
Q 003964 171 IAHYPISNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAE 241 (783)
Q Consensus 171 ~~~yg~~n~~g~~~ge~~~~e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAe 241 (783)
...+.... .....+....+.++|||+|||.++++++|+++|++||.|..|+ .+++++|| |.+.++|+
T Consensus 85 ~v~~~~~~----~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 160 (196)
T 1l3k_A 85 EPKRAVSR----EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD 160 (196)
T ss_dssp EEEECCC---------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred eeecccCc----ccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHH
Confidence 00010000 0111122234568999999999999999999999999999987 36778887 99999999
Q ss_pred HHHHHhCCCeeCCcEeEEEecCCCccc
Q 003964 242 AALRALNRSDINGKRIKLEPSRPGGAR 268 (783)
Q Consensus 242 kAI~aLNG~~I~Gr~IkVe~A~pr~~r 268 (783)
+||+. +|..|.|+.|+|.+|.++...
T Consensus 161 ~A~~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 161 KIVIQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp HHHHC-SCCEETTEECEEEECC-----
T ss_pred HHHHh-CCcEECCEEEEEEecCChhHh
Confidence 99986 799999999999999987654
No 70
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=6.3e-13 Score=119.40 Aligned_cols=78 Identities=14% Similarity=0.213 Sum_probs=68.7
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEecCCCcccc--ccCHHHHHHHHHHhCCCeeCC-----cEeEEEecC
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGF--FYDVRAAEAALRALNRSDING-----KRIKLEPSR 263 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~~tgKsrGF--F~d~edAekAI~aLNG~~I~G-----r~IkVe~A~ 263 (783)
....++|||+|||+++++++|+++|++||+|+.|+......|| |.+.++|++||+.|||++|.| +.|+|++|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 3457899999999999999999999999999999843334566 999999999999999999999 999999999
Q ss_pred CCccc
Q 003964 264 PGGAR 268 (783)
Q Consensus 264 pr~~r 268 (783)
++...
T Consensus 92 ~~~~~ 96 (108)
T 1x4c_A 92 PRSPS 96 (108)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 86543
No 71
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.42 E-value=3.2e-13 Score=122.40 Aligned_cols=75 Identities=21% Similarity=0.395 Sum_probs=67.4
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEE
Q 003964 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKL 259 (783)
Q Consensus 189 ~~e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkV 259 (783)
....+.++|||+|||+++++++|+++|++||+|+.|+ .+++++|| |.+.++|++||+.|||..|.|++|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3456679999999999999999999999999999987 34677777 99999999999999999999999999
Q ss_pred EecC
Q 003964 260 EPSR 263 (783)
Q Consensus 260 e~A~ 263 (783)
++++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9985
No 72
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=2.5e-13 Score=126.64 Aligned_cols=82 Identities=21% Similarity=0.289 Sum_probs=70.1
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-cCCCcccc--ccCHHHHHHHHHHhCC--CeeCCcEeEEEec
Q 003964 188 PYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-TACKHRGF--FYDVRAAEAALRALNR--SDINGKRIKLEPS 262 (783)
Q Consensus 188 ~~~e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-~tgKsrGF--F~d~edAekAI~aLNG--~~I~Gr~IkVe~A 262 (783)
.....++++|||+|||+++++++|+++|++||+|++|+ ...|..|| |.+.++|++||+.|++ ..|.|++|+|++|
T Consensus 25 ~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 25 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp TSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 33456789999999999999999999999999999998 33445556 9999999999999984 6899999999999
Q ss_pred CCCcccc
Q 003964 263 RPGGARR 269 (783)
Q Consensus 263 ~pr~~rr 269 (783)
+++..+.
T Consensus 105 ~~k~~~~ 111 (119)
T 2ad9_A 105 NHKELKT 111 (119)
T ss_dssp SSSSCCC
T ss_pred cCCCCCc
Confidence 8876543
No 73
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.42 E-value=2.6e-13 Score=126.72 Aligned_cols=78 Identities=27% Similarity=0.451 Sum_probs=70.5
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEE
Q 003964 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLE 260 (783)
Q Consensus 190 ~e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe 260 (783)
...+.++|||+|||.++++++|+++|++||+|+.|+ .+++++|| |.+.++|++||+.|||..|.|++|+|+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345679999999999999999999999999999998 34677777 999999999999999999999999999
Q ss_pred ecCCCcc
Q 003964 261 PSRPGGA 267 (783)
Q Consensus 261 ~A~pr~~ 267 (783)
+++++..
T Consensus 122 ~a~~~~p 128 (129)
T 2kxn_B 122 FSITKRP 128 (129)
T ss_dssp CCSSSSC
T ss_pred EecCCCC
Confidence 9988653
No 74
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=6.4e-13 Score=115.08 Aligned_cols=76 Identities=33% Similarity=0.485 Sum_probs=68.5
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEecCCCcccc--ccCHHHHHHHHHHhCCCeeCCcEeEEEecCCCccc
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGF--FYDVRAAEAALRALNRSDINGKRIKLEPSRPGGAR 268 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~~tgKsrGF--F~d~edAekAI~aLNG~~I~Gr~IkVe~A~pr~~r 268 (783)
.+.++|||+|||.++++++|+++|++||.|..|+.. +..|| |.+.++|++||+.|||..+.|++|+|++++++..+
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 84 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKK 84 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCCC
Confidence 457899999999999999999999999999999843 34777 99999999999999999999999999999887543
No 75
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=2.4e-13 Score=118.29 Aligned_cols=77 Identities=21% Similarity=0.259 Sum_probs=66.2
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCC-EEEEecCCCcccc--ccCHHHHHHHHHHhCC-CeeCCcEeEEEecCCCcc
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGD-IRTLYTACKHRGF--FYDVRAAEAALRALNR-SDINGKRIKLEPSRPGGA 267 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~-I~~v~~tgKsrGF--F~d~edAekAI~aLNG-~~I~Gr~IkVe~A~pr~~ 267 (783)
.+.++|||+|||.++++++|+++|++||. |..+....+..|| |.+.++|++||+.||| ..|.|++|+|++++++..
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~~ 85 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKKL 85 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCccc
Confidence 45689999999999999999999999999 5554443344555 9999999999999999 999999999999998764
Q ss_pred c
Q 003964 268 R 268 (783)
Q Consensus 268 r 268 (783)
+
T Consensus 86 ~ 86 (93)
T 2cqh_A 86 R 86 (93)
T ss_dssp C
T ss_pred c
Confidence 4
No 76
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.42 E-value=2.8e-13 Score=118.30 Aligned_cols=77 Identities=25% Similarity=0.535 Sum_probs=68.7
Q ss_pred CCCCCEEEEecCCCCCCHHHHH----HHhhcCCCEEEEe--cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEE
Q 003964 191 EHPSRTLFVRNINSNVEDLELR----SLFEQYGDIRTLY--TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLE 260 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLr----elFsqfG~I~~v~--~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe 260 (783)
..++++|||+|||.++++++|+ ++|++||.|..|+ .+++++|| |.+.++|++|++.|||..+.|+.|+|+
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4568999999999999999999 9999999999997 33455565 999999999999999999999999999
Q ss_pred ecCCCcc
Q 003964 261 PSRPGGA 267 (783)
Q Consensus 261 ~A~pr~~ 267 (783)
+++++..
T Consensus 85 ~a~~~~~ 91 (97)
T 1nu4_A 85 YAKTDSD 91 (97)
T ss_dssp ECSSCCT
T ss_pred EccCCCc
Confidence 9998764
No 77
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.41 E-value=4.3e-13 Score=122.86 Aligned_cols=78 Identities=22% Similarity=0.439 Sum_probs=70.4
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEe
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEP 261 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~ 261 (783)
..++++|||+|||.++++++|+++|++||.|..|. .+++++|| |.+.++|++||+.|||..|.|+.|+|++
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 45578999999999999999999999999999998 26677777 9999999999999999999999999999
Q ss_pred cCCCccc
Q 003964 262 SRPGGAR 268 (783)
Q Consensus 262 A~pr~~r 268 (783)
++++..+
T Consensus 99 a~~~~~~ 105 (126)
T 3ex7_B 99 CFVRGPP 105 (126)
T ss_dssp SEESSSC
T ss_pred ecCCCCC
Confidence 9876543
No 78
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.41 E-value=7e-13 Score=117.58 Aligned_cols=76 Identities=20% Similarity=0.392 Sum_probs=68.5
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEe
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEP 261 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~ 261 (783)
..+.++|||+|||+++++++|+++|++|| |..|+ .+++++|| |.+.++|++|| .|||..|.|++|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 45679999999999999999999999997 99987 35778887 99999999999 8999999999999999
Q ss_pred cCCCccc
Q 003964 262 SRPGGAR 268 (783)
Q Consensus 262 A~pr~~r 268 (783)
++++..+
T Consensus 90 a~~~~~~ 96 (103)
T 2dng_A 90 AEGRKQD 96 (103)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 9987643
No 79
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.41 E-value=3.2e-13 Score=124.06 Aligned_cols=75 Identities=16% Similarity=0.167 Sum_probs=66.6
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCC-CEEEEec-CCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEecCCC
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYG-DIRTLYT-ACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPSRPG 265 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG-~I~~v~~-tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A~pr 265 (783)
...++|||+|||+++++++|+++|++|| +|..+.. .++++|| |.+.++|++||+.|||.+|.|++|+|++++.+
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 4468999999999999999999999999 8999884 4567777 99999999999999999999999999999755
Q ss_pred c
Q 003964 266 G 266 (783)
Q Consensus 266 ~ 266 (783)
.
T Consensus 106 p 106 (111)
T 2jvr_A 106 P 106 (111)
T ss_dssp -
T ss_pred C
Confidence 3
No 80
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=9.1e-13 Score=119.22 Aligned_cols=77 Identities=29% Similarity=0.444 Sum_probs=69.2
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEE
Q 003964 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLE 260 (783)
Q Consensus 190 ~e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe 260 (783)
.+.+.++|||+|||.++++++|+++|++||+|+.|+ .+++++|| |.+.++|++||+.|++ .|.|++|+|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 355679999999999999999999999999999998 35677777 9999999999999998 8999999999
Q ss_pred ecCCCcc
Q 003964 261 PSRPGGA 267 (783)
Q Consensus 261 ~A~pr~~ 267 (783)
+++++..
T Consensus 92 ~a~~~~~ 98 (116)
T 2cqd_A 92 LAYLGAK 98 (116)
T ss_dssp ESTTTCC
T ss_pred EcccCCC
Confidence 9987643
No 81
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=6.1e-13 Score=119.32 Aligned_cols=78 Identities=22% Similarity=0.297 Sum_probs=69.2
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-cCCCcccc--ccCHHHHHHHHHHhCCCeeCCcEeEEEecCCCcc
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-TACKHRGF--FYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 267 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-~tgKsrGF--F~d~edAekAI~aLNG~~I~Gr~IkVe~A~pr~~ 267 (783)
..+.++|||+|||.++++++|+++|++||.|..|+ ...+..|| |.+.++|++||+.|+|..|.|++|+|++++++..
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 34578999999999999999999999999999998 33345555 9999999999999999999999999999998764
Q ss_pred c
Q 003964 268 R 268 (783)
Q Consensus 268 r 268 (783)
.
T Consensus 102 ~ 102 (109)
T 1x4g_A 102 M 102 (109)
T ss_dssp S
T ss_pred C
Confidence 3
No 82
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.41 E-value=7.9e-14 Score=130.26 Aligned_cols=153 Identities=18% Similarity=0.194 Sum_probs=99.2
Q ss_pred cCCCCCCCchhhhhccccCCCCCCCCCCCCccccccccCCCCcccccCCccccccccccccccCCCCCCCcccCCCCCCC
Q 003964 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLEDDLFDSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYPISNGV 180 (783)
Q Consensus 101 IGnLlpDddddllagv~d~~~~~~~~~~~dD~eDDiF~sgGGmeLe~d~~esls~~~~~~s~~dg~~~nG~~~yg~~n~~ 180 (783)
||||.++.+++.|..+|..+|.+....-..|.+ ......+.+++... +.+..+... .++....+..-. .
T Consensus 5 V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~--~~a~~A~~~---l~~~~~~g~~i~-v---- 73 (166)
T 3md3_A 5 VGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQS--HDANIALQT---LNGKQIENNIVK-I---- 73 (166)
T ss_dssp EEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSH--HHHHHHHHH---HTTCEETTEECE-E----
T ss_pred ECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCH--HHHHHHHHH---cCCCccCCCeeE-E----
Confidence 899999999999999999998664332111111 00011133344322 222222211 122111111000 0
Q ss_pred CCcCCCCCCCCCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCe
Q 003964 181 GTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSD 251 (783)
Q Consensus 181 g~~~ge~~~~e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~ 251 (783)
............+.++|||+|||.++++++|+++|++||.|..+. .+++++|| |.+.++|++|++.|||..
T Consensus 74 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 153 (166)
T 3md3_A 74 NWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD 153 (166)
T ss_dssp EECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred EEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc
Confidence 000011112345678999999999999999999999999999987 35777777 999999999999999999
Q ss_pred eCCcEeEEEecCC
Q 003964 252 INGKRIKLEPSRP 264 (783)
Q Consensus 252 I~Gr~IkVe~A~p 264 (783)
+.|++|+|+||++
T Consensus 154 ~~g~~i~v~~a~~ 166 (166)
T 3md3_A 154 LNGRPLRINWAAK 166 (166)
T ss_dssp ETTEECEEEESCC
T ss_pred cCCcEEEEEecCC
Confidence 9999999999964
No 83
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.41 E-value=2e-13 Score=133.69 Aligned_cols=161 Identities=16% Similarity=0.272 Sum_probs=102.8
Q ss_pred cCCCCCCCchhhhhccccCCCCCCCCCCCCccccccccCCCCcccccCCccccccccccccccCCCCCCCc---ccCCCC
Q 003964 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLEDDLFDSGGGMELEFEPHESLSIGVSKLNISDGIAGTGI---AHYPIS 177 (783)
Q Consensus 101 IGnLlpDddddllagv~d~~~~~~~~~~~dD~eDDiF~sgGGmeLe~d~~esls~~~~~~s~~dg~~~nG~---~~yg~~ 177 (783)
|+||.++.+++.|..+|..++.+.......|.......-.+.+++... +.+..+... .++....|. +.+...
T Consensus 33 V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~--~~A~~A~~~---l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 33 VGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVP--EAAQLALEQ---MNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp EECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSH--HHHHHHHHH---HSSCCCC-CCCEEECCSC
T ss_pred EECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCH--HHHHHHHHH---ccCCeeCCeeEEEecCCC
Confidence 999999999999999999998664432222222221222234455422 222222221 122111111 100000
Q ss_pred CCCCC-cCCCCCCCCCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHh
Q 003964 178 NGVGT-VAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRAL 247 (783)
Q Consensus 178 n~~g~-~~ge~~~~e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aL 247 (783)
..... ..........+.++|||+||+.++++++|+++|++||.|..|+ .+++++|| |.+.++|++|++.|
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l 187 (216)
T 2qfj_A 108 IGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 187 (216)
T ss_dssp CGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHc
Confidence 00000 0000000124568999999999999999999999999999988 35677877 99999999999999
Q ss_pred CCCeeCCcEeEEEecCCCc
Q 003964 248 NRSDINGKRIKLEPSRPGG 266 (783)
Q Consensus 248 NG~~I~Gr~IkVe~A~pr~ 266 (783)
||..|.|+.|+|.+++++.
T Consensus 188 ~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 188 NLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp TTCBCSSSBCEEEECSSCS
T ss_pred cCCEeCCcEEEEEEecCCC
Confidence 9999999999999998765
No 84
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.41 E-value=6.1e-13 Score=128.34 Aligned_cols=103 Identities=22% Similarity=0.429 Sum_probs=89.1
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEe
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEP 261 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~ 261 (783)
..+.++|||+|||+++++++|+++|++||+|.+|+ .+++++|| |.+.++|++||+. ++..+.|+.|+|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 44579999999999999999999999999999987 35777887 9999999999985 99999999999999
Q ss_pred cCCCcc----------ccccccccccccCHHHHhhhhccCCCC
Q 003964 262 SRPGGA----------RRNLMQQLNQELEQDEARGFRHQVGSP 294 (783)
Q Consensus 262 A~pr~~----------rr~~vqqlsq~~~qde~~~~fsq~Gsp 294 (783)
+.++.. +..++.+++...++++++.+|..+|..
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i 131 (196)
T 1l3k_A 89 AVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 131 (196)
T ss_dssp CCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCE
T ss_pred ccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCe
Confidence 976532 345788999999999999999999853
No 85
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.41 E-value=2.7e-13 Score=122.96 Aligned_cols=75 Identities=17% Similarity=0.226 Sum_probs=66.0
Q ss_pred CCCCEEEEecCCC-CCCHHHHHHHhhcCCCEEEEe-cCCCcccc--ccCHHHHHHHHHHhCCC--eeCCcEeEEEecCCC
Q 003964 192 HPSRTLFVRNINS-NVEDLELRSLFEQYGDIRTLY-TACKHRGF--FYDVRAAEAALRALNRS--DINGKRIKLEPSRPG 265 (783)
Q Consensus 192 ~psrtLFVGNLp~-dvTEeeLrelFsqfG~I~~v~-~tgKsrGF--F~d~edAekAI~aLNG~--~I~Gr~IkVe~A~pr 265 (783)
.++++|||+|||+ ++++++|+++|++||+|++|+ ...+..|| |.+.++|++||+.||+. .|.||+|+|++|+.+
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 3679999999999 999999999999999999998 43445566 99999999999999864 599999999999865
Q ss_pred c
Q 003964 266 G 266 (783)
Q Consensus 266 ~ 266 (783)
.
T Consensus 93 ~ 93 (102)
T 1x4d_A 93 K 93 (102)
T ss_dssp T
T ss_pred C
Confidence 3
No 86
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=4.6e-13 Score=114.19 Aligned_cols=73 Identities=30% Similarity=0.521 Sum_probs=64.8
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEec-CCCcccc--ccCHHHHHHHHHHh-CCCeeCCcEeEEEecC
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-ACKHRGF--FYDVRAAEAALRAL-NRSDINGKRIKLEPSR 263 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~~-tgKsrGF--F~d~edAekAI~aL-NG~~I~Gr~IkVe~A~ 263 (783)
+.+.++|||+|||.++++++|+++|++||+|..|+. ..+..|| |.+.++|++|++.| +|..+.|++|+|++|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 456789999999999999999999999999999983 2234445 99999999999999 9999999999999985
No 87
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.41 E-value=6.6e-13 Score=118.11 Aligned_cols=73 Identities=19% Similarity=0.391 Sum_probs=67.2
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEec
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPS 262 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A 262 (783)
..+.++|||+|||+++++++|+++|++||.|+.|+ .+++++|| |.+.++|++||+.|||..|.|+.|+|++|
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 35679999999999999999999999999999987 45677777 99999999999999999999999999998
Q ss_pred C
Q 003964 263 R 263 (783)
Q Consensus 263 ~ 263 (783)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 6
No 88
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.41 E-value=5.1e-13 Score=122.18 Aligned_cols=76 Identities=26% Similarity=0.482 Sum_probs=69.0
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEecC
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPSR 263 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A~ 263 (783)
.+.++|||+|||.++++++|+++|++||.|+.|. .+++++|| |.+.++|++||+.|||..|.|+.|+|++++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 4568999999999999999999999999999987 35677777 999999999999999999999999999998
Q ss_pred CCcc
Q 003964 264 PGGA 267 (783)
Q Consensus 264 pr~~ 267 (783)
++..
T Consensus 85 ~~~~ 88 (116)
T 2fy1_A 85 KPSF 88 (116)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7653
No 89
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.41 E-value=6.3e-14 Score=133.45 Aligned_cols=153 Identities=22% Similarity=0.289 Sum_probs=100.3
Q ss_pred cCCCCCCCchhhhhccccCCCCCCCCCCCCccccccccCCCCcccccCCccccccccccccccCCCCCCCcccCCCCCCC
Q 003964 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLEDDLFDSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYPISNGV 180 (783)
Q Consensus 101 IGnLlpDddddllagv~d~~~~~~~~~~~dD~eDDiF~sgGGmeLe~d~~esls~~~~~~s~~dg~~~nG~~~yg~~n~~ 180 (783)
||||.++.+++.|..+|..++.+... ...|.......-.+.+++... +.+..+.. .++....|..-. ..
T Consensus 18 V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~--~~a~~A~~----l~g~~~~g~~l~-v~--- 86 (175)
T 1fje_B 18 IGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESA--EDLEKALE----LTGLKVFGNEIK-LE--- 86 (175)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSH--HHHHHHHH----GGGEEETTEEEE-EE---
T ss_pred EeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCH--HHHHHHHh----cCCCEeCCeEEE-Ee---
Confidence 99999998888888777776643221 111212222223344555433 22222221 111111111000 00
Q ss_pred CCcCCCCCCCCCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEecCCCcccc----ccCHHHHHHHHHHhCCCeeCCcE
Q 003964 181 GTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGF----FYDVRAAEAALRALNRSDINGKR 256 (783)
Q Consensus 181 g~~~ge~~~~e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~ 256 (783)
...........+.++|||+|||.++++++|+++|++||+|+.+..+++++|| |.+.++|++|++.|||..|.|++
T Consensus 87 -~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 165 (175)
T 1fje_B 87 -KPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 165 (175)
T ss_dssp -CCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEE
T ss_pred -cCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 0001111223467899999999999999999999999999998666777877 99999999999999999999999
Q ss_pred eEEEecCCC
Q 003964 257 IKLEPSRPG 265 (783)
Q Consensus 257 IkVe~A~pr 265 (783)
|+|++|+++
T Consensus 166 i~v~~a~~k 174 (175)
T 1fje_B 166 VSLYYTGEK 174 (175)
T ss_dssp EEEEECSSC
T ss_pred EEEEecCCC
Confidence 999999886
No 90
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=3.8e-13 Score=118.06 Aligned_cols=75 Identities=19% Similarity=0.347 Sum_probs=68.7
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCEE-EEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcE----e
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIR-TLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKR----I 257 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~I~-~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~----I 257 (783)
.++++|||+|||.++++++|+++|++||+|. .|+ .+++++|| |.+.++|++|++.|||..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4579999999999999999999999999999 877 36778887 99999999999999999999999 9
Q ss_pred EEEecCCCc
Q 003964 258 KLEPSRPGG 266 (783)
Q Consensus 258 kVe~A~pr~ 266 (783)
+|++|++..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999998765
No 91
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=4.4e-13 Score=120.95 Aligned_cols=77 Identities=25% Similarity=0.437 Sum_probs=68.7
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe---cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEe
Q 003964 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY---TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEP 261 (783)
Q Consensus 189 ~~e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~---~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~ 261 (783)
....+.++|||+||+.++++++|+++|++||+|..|+ ..++++|| |.+.++|++|++.|||..|.|++|+|++
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456689999999999999999999999999999987 23445666 9999999999999999999999999999
Q ss_pred cCCC
Q 003964 262 SRPG 265 (783)
Q Consensus 262 A~pr 265 (783)
++++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9876
No 92
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=4.9e-13 Score=118.38 Aligned_cols=78 Identities=24% Similarity=0.382 Sum_probs=70.8
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhc-CCCEEEEe----cCCCcccc----ccCHHHHHHHHHHhCCCe-eCCcEeEEEe
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQ-YGDIRTLY----TACKHRGF----FYDVRAAEAALRALNRSD-INGKRIKLEP 261 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsq-fG~I~~v~----~tgKsrGF----F~d~edAekAI~aLNG~~-I~Gr~IkVe~ 261 (783)
.+.++|||+|||.++++++|+++|++ ||.|..|+ .+++++|| |.+.++|++||+.|+|.. |.|++|+|++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 45789999999999999999999999 99999988 36777877 999999999999999999 9999999999
Q ss_pred cCCCcccc
Q 003964 262 SRPGGARR 269 (783)
Q Consensus 262 A~pr~~rr 269 (783)
++++..++
T Consensus 87 a~~~~~~~ 94 (104)
T 2dhg_A 87 AIPKASRV 94 (104)
T ss_dssp CCCCCSCC
T ss_pred ccCCCcCC
Confidence 98876544
No 93
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.40 E-value=3.8e-13 Score=138.37 Aligned_cols=169 Identities=15% Similarity=0.183 Sum_probs=120.5
Q ss_pred cCCCCCCCchhhhhccccCCCCCCCCCCCCccccccccCCCCcccccCCccccccccccccccCCCCCCCcccCCCCCCC
Q 003964 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLEDDLFDSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYPISNGV 180 (783)
Q Consensus 101 IGnLlpDddddllagv~d~~~~~~~~~~~dD~eDDiF~sgGGmeLe~d~~esls~~~~~~s~~dg~~~nG~~~yg~~n~~ 180 (783)
||||.++.+++.|..+|..+| +..+.. ..-...+.+++... +.+..+.. ..++....|..
T Consensus 27 V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~--~~A~~A~~---~l~~~~~~g~~-------- 86 (284)
T 3smz_A 27 IRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNG--EQAEAAIN---AFHQSRLRERE-------- 86 (284)
T ss_dssp EECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSH--HHHHHHHH---HHTTCEETTEE--------
T ss_pred EeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCH--HHHHHHHH---HcCCCeeCCeE--------
Confidence 899999999999999999997 322211 11111233344322 22222222 12222111110
Q ss_pred CCcCCCCCCCCCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCe
Q 003964 181 GTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSD 251 (783)
Q Consensus 181 g~~~ge~~~~e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~ 251 (783)
...+ -.++.++|||+|||.++++++|+++|++||.|..|+ .+++++|| |.+.++|.+|++.|+|..
T Consensus 87 --i~v~---~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~ 161 (284)
T 3smz_A 87 --LSVQ---LQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKP 161 (284)
T ss_dssp --CEEE---ECCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred --EEEE---ecCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCE
Confidence 0000 023468999999999999999999999999999987 36778877 999999999999999999
Q ss_pred eCCcEeEEEecCCCc-------ccccccccccccc-CHHHHhhhhccCCCC
Q 003964 252 INGKRIKLEPSRPGG-------ARRNLMQQLNQEL-EQDEARGFRHQVGSP 294 (783)
Q Consensus 252 I~Gr~IkVe~A~pr~-------~rr~~vqqlsq~~-~qde~~~~fsq~Gsp 294 (783)
+.|+.|+|.++.++. .+..++.+++..+ ++++++.+|..+|..
T Consensus 162 ~~g~~i~v~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i 212 (284)
T 3smz_A 162 LGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSP 212 (284)
T ss_dssp ETTEECEEEECCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCC
T ss_pred eCCcEEEEEECCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCe
Confidence 999999999998654 2344788999986 889999999999854
No 94
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.40 E-value=3.4e-13 Score=119.02 Aligned_cols=74 Identities=19% Similarity=0.261 Sum_probs=65.8
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEec-CCCcccc--ccCHHHHHHHHHHhCCCeeCCcEeEEEecCCC
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-ACKHRGF--FYDVRAAEAALRALNRSDINGKRIKLEPSRPG 265 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~~-tgKsrGF--F~d~edAekAI~aLNG~~I~Gr~IkVe~A~pr 265 (783)
...++|||+||+.++++++|+++|++||.|.+|+. ..+..|| |.+.++|++|++.|||..+.|++|+|++++++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 44689999999999999999999999999999983 2333444 99999999999999999999999999999874
No 95
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.40 E-value=6.7e-13 Score=116.89 Aligned_cols=76 Identities=26% Similarity=0.442 Sum_probs=67.4
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEec-CCCcccc--ccCHHHHHHHHHHhCCCeeCCcEeEEEecCCCcc
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-ACKHRGF--FYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 267 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~~-tgKsrGF--F~d~edAekAI~aLNG~~I~Gr~IkVe~A~pr~~ 267 (783)
.+.++|||+|||.++++++|+++|++||+|+.|+. ..+..+| |.+.++|++|++.|||..|.|++|+|++++++..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSAS 91 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCCC
Confidence 46789999999999999999999999999999883 2334444 9999999999999999999999999999988653
No 96
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=6.8e-13 Score=119.49 Aligned_cols=78 Identities=24% Similarity=0.404 Sum_probs=69.6
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCE----EEEe-cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEe
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDI----RTLY-TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEP 261 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I----~~v~-~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~ 261 (783)
..++++|||+|||.++++++|+++|++||.| ..++ .+++++|| |.+.++|++||+.|||..|.|++|+|++
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4567999999999999999999999999998 4444 57788877 9999999999999999999999999999
Q ss_pred cCCCccc
Q 003964 262 SRPGGAR 268 (783)
Q Consensus 262 A~pr~~r 268 (783)
++++..+
T Consensus 102 a~~~~~~ 108 (115)
T 2cpx_A 102 GKNKKQR 108 (115)
T ss_dssp CCCCSCC
T ss_pred ccCCCCC
Confidence 9987644
No 97
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.40 E-value=1.2e-13 Score=122.86 Aligned_cols=74 Identities=18% Similarity=0.264 Sum_probs=68.4
Q ss_pred CCCEEEEecCCC------CCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCC-cE
Q 003964 193 PSRTLFVRNINS------NVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDING-KR 256 (783)
Q Consensus 193 psrtLFVGNLp~------dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~G-r~ 256 (783)
.+++|||+|||. ++++++|+++|++||+|.+|+ .+++++|| |.+.++|++||+.|||..|.| ++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 368999999999 999999999999999999998 45888888 999999999999999999999 99
Q ss_pred eEEEecCCCc
Q 003964 257 IKLEPSRPGG 266 (783)
Q Consensus 257 IkVe~A~pr~ 266 (783)
|+|.+++++.
T Consensus 85 l~V~~a~~~~ 94 (100)
T 3ns6_A 85 LFLYTMKDVE 94 (100)
T ss_dssp CEEEESHHHH
T ss_pred EEEEECchhh
Confidence 9999998753
No 98
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.40 E-value=4.8e-13 Score=121.04 Aligned_cols=80 Identities=21% Similarity=0.385 Sum_probs=69.0
Q ss_pred CCCCCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEecCCCcccc--ccCHHHHHHHHHHhCCCeeCCcEeEEEecCCC
Q 003964 188 PYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGF--FYDVRAAEAALRALNRSDINGKRIKLEPSRPG 265 (783)
Q Consensus 188 ~~~e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~~tgKsrGF--F~d~edAekAI~aLNG~~I~Gr~IkVe~A~pr 265 (783)
...+.+.++|||+||+.++++++|+++|++||+|+.|+.. +..|| |.+.++|++|++.|||..|.|+.|+|++++++
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 3445678999999999999999999999999999999854 55556 99999999999999999999999999999987
Q ss_pred ccc
Q 003964 266 GAR 268 (783)
Q Consensus 266 ~~r 268 (783)
..+
T Consensus 104 ~~r 106 (108)
T 2jvo_A 104 AKR 106 (108)
T ss_dssp C--
T ss_pred CCC
Confidence 644
No 99
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=8.7e-13 Score=116.36 Aligned_cols=78 Identities=27% Similarity=0.525 Sum_probs=70.3
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe--cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEecCC
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY--TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPSRP 264 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~--~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A~p 264 (783)
..+.++|||+|||.++++++|+++|++|+.|.-+. .+++++|| |.+.++|++||+.|||..|.|+.|+|+++++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 91 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 35679999999999999999999999999887776 56778887 9999999999999999999999999999998
Q ss_pred Cccc
Q 003964 265 GGAR 268 (783)
Q Consensus 265 r~~r 268 (783)
+..+
T Consensus 92 ~~~~ 95 (102)
T 2fc8_A 92 KGEG 95 (102)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7654
No 100
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.40 E-value=1.4e-13 Score=119.58 Aligned_cols=72 Identities=18% Similarity=0.311 Sum_probs=61.8
Q ss_pred CEEEEecCCCCCCHHHHHHHhhcCC--CEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEecC
Q 003964 195 RTLFVRNINSNVEDLELRSLFEQYG--DIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPSR 263 (783)
Q Consensus 195 rtLFVGNLp~dvTEeeLrelFsqfG--~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A~ 263 (783)
.+|||+||++++++++|+++|++|| +|.+|+ .+++++|| |.+.++|++||+.|||..|.|++|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 888887 47888888 999999999999999999999999999998
Q ss_pred CCc
Q 003964 264 PGG 266 (783)
Q Consensus 264 pr~ 266 (783)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 765
No 101
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.40 E-value=1e-12 Score=116.41 Aligned_cols=76 Identities=28% Similarity=0.433 Sum_probs=67.9
Q ss_pred CCCCCCEEEEecCCC-CCCHHHHHHHhhcCCCEEEEecCCCcccc--ccCHHHHHHHHHHhCCCeeCCcEeEEEecCCCc
Q 003964 190 GEHPSRTLFVRNINS-NVEDLELRSLFEQYGDIRTLYTACKHRGF--FYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 266 (783)
Q Consensus 190 ~e~psrtLFVGNLp~-dvTEeeLrelFsqfG~I~~v~~tgKsrGF--F~d~edAekAI~aLNG~~I~Gr~IkVe~A~pr~ 266 (783)
..+++++|||+||++ ++++++|+++|++||.|..|+.. +..|| |.+.++|++|++.|||..+.|++|+|++++++.
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSNA 96 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCCC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCCC
Confidence 356789999999998 99999999999999999999863 44555 999999999999999999999999999998754
No 102
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1.6e-12 Score=114.51 Aligned_cols=76 Identities=21% Similarity=0.383 Sum_probs=68.1
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcC--CCEEEEecCCCcccc--ccCHHHHHHHHHHhCCCeeCCcEeEEEecCCCc
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQY--GDIRTLYTACKHRGF--FYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 266 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqf--G~I~~v~~tgKsrGF--F~d~edAekAI~aLNG~~I~Gr~IkVe~A~pr~ 266 (783)
..+.++|||+|||+++++++|+++|++| |.|..|+.. +..|| |.+.++|++||+.|||..|.|++|+|++++++.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVD 90 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCC
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 4567999999999999999999999999 999998742 34566 999999999999999999999999999999876
Q ss_pred c
Q 003964 267 A 267 (783)
Q Consensus 267 ~ 267 (783)
.
T Consensus 91 ~ 91 (99)
T 2cpd_A 91 K 91 (99)
T ss_dssp C
T ss_pred C
Confidence 4
No 103
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.40 E-value=4.7e-13 Score=117.26 Aligned_cols=75 Identities=23% Similarity=0.181 Sum_probs=67.0
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEe
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEP 261 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~ 261 (783)
....++|||+|||+++++++|+++|++||.|..+. .+++++|| |.+.++|++||+.|||..|.|++|+|++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34568999999999999999999999999986543 56778887 9999999999999999999999999999
Q ss_pred cCCC
Q 003964 262 SRPG 265 (783)
Q Consensus 262 A~pr 265 (783)
++.+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 9764
No 104
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1.3e-13 Score=121.94 Aligned_cols=78 Identities=22% Similarity=0.498 Sum_probs=70.1
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEe
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEP 261 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~ 261 (783)
+.+.++|||+|||.++++++|+++|++||.|..|+ .+++++|| |.+.++|++|++.|||..|.|+.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 34568999999999999999999999999999887 35677777 9999999999999999999999999999
Q ss_pred cCCCccc
Q 003964 262 SRPGGAR 268 (783)
Q Consensus 262 A~pr~~r 268 (783)
++++..+
T Consensus 85 a~~~~~~ 91 (104)
T 1p1t_A 85 AASEKNK 91 (104)
T ss_dssp TTCTTHH
T ss_pred CCCccch
Confidence 9987644
No 105
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.39 E-value=3.5e-13 Score=120.22 Aligned_cols=73 Identities=22% Similarity=0.384 Sum_probs=64.4
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCC--EEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCC----eeCCcE
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGD--IRTLY-----TACKHRGF----FYDVRAAEAALRALNRS----DINGKR 256 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~--I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~----~I~Gr~ 256 (783)
..-.||||+|||+++|+++|+++|++||. |.+|+ .++++||| |.+.++|++||+.|||. .|+||+
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 34579999999999999999999999995 45665 46888888 99999999999999997 489999
Q ss_pred eEEEecCC
Q 003964 257 IKLEPSRP 264 (783)
Q Consensus 257 IkVe~A~p 264 (783)
|+|+||+.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999975
No 106
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.39 E-value=2.6e-13 Score=118.00 Aligned_cols=74 Identities=23% Similarity=0.214 Sum_probs=64.5
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEe
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEP 261 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~ 261 (783)
.++.++|||+|||+++++++|+++|++||.|..++ .+++++|| |.+.++|++||+.|||..|.|++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34568999999999999999999999999987554 45777887 9999999999999999999999999999
Q ss_pred cCC
Q 003964 262 SRP 264 (783)
Q Consensus 262 A~p 264 (783)
+.+
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 875
No 107
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.39 E-value=1.1e-12 Score=124.73 Aligned_cols=79 Identities=25% Similarity=0.381 Sum_probs=71.5
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEe
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEP 261 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~ 261 (783)
..+.++|||+|||.++++++|+++|++||+|+.|+ .+++++|| |.+.++|++||+.||+..|.|++|+|++
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35679999999999999999999999999999998 35777887 9999999999999999999999999999
Q ss_pred cCCCcccc
Q 003964 262 SRPGGARR 269 (783)
Q Consensus 262 A~pr~~rr 269 (783)
|+++..++
T Consensus 116 a~~~~~~~ 123 (156)
T 1h2v_Z 116 DAGFKEGR 123 (156)
T ss_dssp ESCCCTTC
T ss_pred CCCCCCcC
Confidence 99866544
No 108
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=5.2e-13 Score=118.62 Aligned_cols=78 Identities=29% Similarity=0.544 Sum_probs=70.3
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEE
Q 003964 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLE 260 (783)
Q Consensus 190 ~e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe 260 (783)
...+.++|||+|||+++++++|+++|++||+|..|+ .+++++|| |.+.++|++||+. ++..|.|+.|+|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 345679999999999999999999999999999988 35777887 9999999999998 9999999999999
Q ss_pred ecCCCccc
Q 003964 261 PSRPGGAR 268 (783)
Q Consensus 261 ~A~pr~~r 268 (783)
+++++..+
T Consensus 91 ~a~~~~~~ 98 (105)
T 2dh8_A 91 PCTPRGMQ 98 (105)
T ss_dssp CSCCSSCC
T ss_pred EccCCCCC
Confidence 99987643
No 109
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.38 E-value=3.5e-13 Score=125.27 Aligned_cols=77 Identities=22% Similarity=0.358 Sum_probs=68.9
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEE--Ee-----cCCCcccc----ccCHHHHHHHHHHhCCC----eeC
Q 003964 189 YGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRT--LY-----TACKHRGF----FYDVRAAEAALRALNRS----DIN 253 (783)
Q Consensus 189 ~~e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~--v~-----~tgKsrGF----F~d~edAekAI~aLNG~----~I~ 253 (783)
..+.++++|||+||++++++++|+++|++||.|.. |+ .++++||| |.+. +|++||+.|||. .|.
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 33466789999999999999999999999999965 55 47888888 9999 999999999999 999
Q ss_pred CcEeEEEecCCCc
Q 003964 254 GKRIKLEPSRPGG 266 (783)
Q Consensus 254 Gr~IkVe~A~pr~ 266 (783)
||+|+|++++++.
T Consensus 97 gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 97 GKTINVEFAKGSK 109 (131)
T ss_dssp GCCCCCEECCCSC
T ss_pred CEEEEEEECCCCC
Confidence 9999999998864
No 110
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.38 E-value=9.1e-13 Score=117.99 Aligned_cols=76 Identities=12% Similarity=0.230 Sum_probs=68.4
Q ss_pred CCCCCEEEEecCCCCC------CHHHHHHHhhcCCCEEEEe---cCCCcccc----ccCHHHHHHHHHHhCCCeeCCc-E
Q 003964 191 EHPSRTLFVRNINSNV------EDLELRSLFEQYGDIRTLY---TACKHRGF----FYDVRAAEAALRALNRSDINGK-R 256 (783)
Q Consensus 191 e~psrtLFVGNLp~dv------TEeeLrelFsqfG~I~~v~---~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr-~ 256 (783)
+...++|||+|||+.+ ++++|+++|++||.|..|+ .+++++|| |.+.++|++||+.|||..|.|+ +
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 4457899999999999 7899999999999999998 46777887 9999999999999999999999 9
Q ss_pred eEEEecCCCc
Q 003964 257 IKLEPSRPGG 266 (783)
Q Consensus 257 IkVe~A~pr~ 266 (783)
|+|+++....
T Consensus 92 l~V~~a~~~~ 101 (105)
T 2nlw_A 92 FRVNLFTDFD 101 (105)
T ss_dssp EEEECSCCCC
T ss_pred EEEEEcchHh
Confidence 9999997643
No 111
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.38 E-value=2.3e-13 Score=127.90 Aligned_cols=147 Identities=18% Similarity=0.225 Sum_probs=99.2
Q ss_pred cCCCCCCCchhhhhccccCCCCCCCCCCCCccccccccCCCCcccccCCccccccccccccccCCCCCCCc---ccCCCC
Q 003964 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLEDDLFDSGGGMELEFEPHESLSIGVSKLNISDGIAGTGI---AHYPIS 177 (783)
Q Consensus 101 IGnLlpDddddllagv~d~~~~~~~~~~~dD~eDDiF~sgGGmeLe~d~~esls~~~~~~s~~dg~~~nG~---~~yg~~ 177 (783)
||||.++.+++.|..+|..+|.+....-..|.......-.+.+++... +.+..+.. ..++....|. ..+.
T Consensus 8 v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~--~~A~~a~~---~l~~~~~~g~~l~v~~~-- 80 (168)
T 1b7f_A 8 VNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSE--MDSQRAIK---VLNGITVRNKRLKVSYA-- 80 (168)
T ss_dssp EECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSH--HHHHHHHH---HHTTCEETTEECEEEEC--
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCH--HHHHHHHH---hcCCCEeCCcEEEEEec--
Confidence 899999999999999999998664332222222111112244455422 22222221 1222111111 1111
Q ss_pred CCCCCcCCCCCCCCCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhC
Q 003964 178 NGVGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALN 248 (783)
Q Consensus 178 n~~g~~~ge~~~~e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLN 248 (783)
.......+.++|||+|||.++++++|+++|++||.|..++ .+++++|| |.+.++|++|++.||
T Consensus 81 --------~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 152 (168)
T 1b7f_A 81 --------RPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN 152 (168)
T ss_dssp --------CCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred --------CCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhc
Confidence 1111234578999999999999999999999999999987 26777777 999999999999999
Q ss_pred CCeeCC--cEeEEEec
Q 003964 249 RSDING--KRIKLEPS 262 (783)
Q Consensus 249 G~~I~G--r~IkVe~A 262 (783)
|..+.| ++|+|++|
T Consensus 153 g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 153 NVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TCCCTTCSSCCEEEEC
T ss_pred CCEecCCCeEEEEEeC
Confidence 999988 99999986
No 112
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.37 E-value=1e-12 Score=112.72 Aligned_cols=71 Identities=28% Similarity=0.528 Sum_probs=65.9
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEecCC
Q 003964 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPSRP 264 (783)
Q Consensus 194 srtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A~p 264 (783)
.++|||+|||.++++++|+++|++||+|..|+ .+++++|| |.+.++|++|+ .|||..+.|++|+|+++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 58999999999999999999999999999987 36777777 99999999999 8999999999999999987
Q ss_pred C
Q 003964 265 G 265 (783)
Q Consensus 265 r 265 (783)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 113
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.37 E-value=2e-13 Score=128.88 Aligned_cols=152 Identities=14% Similarity=0.179 Sum_probs=98.3
Q ss_pred cCCCCCCCchhhhhccccCCCCCCCCCCCCccccc--cccCCCCcccccCCcccccccccccc---ccCCCCCCCcccCC
Q 003964 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLEDD--LFDSGGGMELEFEPHESLSIGVSKLN---ISDGIAGTGIAHYP 175 (783)
Q Consensus 101 IGnLlpDddddllagv~d~~~~~~~~~~~dD~eDD--iF~sgGGmeLe~d~~esls~~~~~~s---~~dg~~~nG~~~yg 175 (783)
||||.++.+++.|..+|..+|.+.......|.... ...-.+.+++... +.+..+...+. +.++....-..
T Consensus 8 V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~--~~A~~A~~~l~~~~~~~~~~~~~~~--- 82 (175)
T 3nmr_A 8 VGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTR--KAALEAQNALHNMKVLPGMHHPIQM--- 82 (175)
T ss_dssp EESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSH--HHHHHHHHHHTTTCCCTTCSSCCEE---
T ss_pred EeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCH--HHHHHHHHHhcCcEEccCCccceEE---
Confidence 99999999999999999999866433211111110 1111233455422 22222222221 11111111110
Q ss_pred CCCCCCCcCCCCCCCCCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe----cCCCcccc----ccCHHHHHHHHHHh
Q 003964 176 ISNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY----TACKHRGF----FYDVRAAEAALRAL 247 (783)
Q Consensus 176 ~~n~~g~~~ge~~~~e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~----~tgKsrGF----F~d~edAekAI~aL 247 (783)
...........+.++|||+|||.++++++|+++|++||.|..|+ .+++++|| |.+.++|++|++.|
T Consensus 83 ------~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 156 (175)
T 3nmr_A 83 ------KPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAM 156 (175)
T ss_dssp ------EECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred ------ccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHh
Confidence 01111112234578999999999999999999999999999988 45677777 99999999999999
Q ss_pred CCCeeC---CcEeEEEecC
Q 003964 248 NRSDIN---GKRIKLEPSR 263 (783)
Q Consensus 248 NG~~I~---Gr~IkVe~A~ 263 (783)
||..+. +++|+|+||.
T Consensus 157 ~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 157 HQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp TTSCCCTTCSSCCEEEECC
T ss_pred cCCcccCCCCCCeEEEecC
Confidence 999876 4999999983
No 114
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=6.5e-13 Score=120.58 Aligned_cols=74 Identities=18% Similarity=0.272 Sum_probs=65.7
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEec-CCCcccc--ccCHHHHHHHHHHhCCCeeCCcEeEEEecCCCc
Q 003964 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-ACKHRGF--FYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 266 (783)
Q Consensus 193 psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~~-tgKsrGF--F~d~edAekAI~aLNG~~I~Gr~IkVe~A~pr~ 266 (783)
..++|||+|||+++++++|+++|++||.|..|.. ..+..|| |.+.++|++||+.|||..|.|+.|+|+||+...
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 4689999999999999999999999999999983 3334455 999999999999999999999999999997643
No 115
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.37 E-value=6.1e-13 Score=128.56 Aligned_cols=76 Identities=16% Similarity=0.472 Sum_probs=70.0
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEec
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPS 262 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A 262 (783)
.+.++|||+|||.++++++|+++|++||.|..|+ .+++++|| |.+.++|++|++.|||..|.|+.|+|+++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 5679999999999999999999999999999988 26777877 99999999999999999999999999999
Q ss_pred CCCcc
Q 003964 263 RPGGA 267 (783)
Q Consensus 263 ~pr~~ 267 (783)
+++..
T Consensus 192 ~~~~~ 196 (198)
T 2yh0_A 192 SVGAK 196 (198)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98764
No 116
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.37 E-value=1.3e-12 Score=118.14 Aligned_cols=78 Identities=22% Similarity=0.414 Sum_probs=66.6
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEE
Q 003964 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLE 260 (783)
Q Consensus 190 ~e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe 260 (783)
...+.++|||+||+.++++++|+++|++||+|..|+ .+++++|| |.+.++|++||+.+ +..|.|+.|+|+
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 345678999999999999999999999999999998 34777777 99999999999976 599999999999
Q ss_pred ecCCCccc
Q 003964 261 PSRPGGAR 268 (783)
Q Consensus 261 ~A~pr~~r 268 (783)
++.++..+
T Consensus 100 ~a~~~~~~ 107 (109)
T 2rs2_A 100 VAFPRRAQ 107 (109)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99987654
No 117
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.37 E-value=1.6e-12 Score=123.25 Aligned_cols=78 Identities=29% Similarity=0.519 Sum_probs=70.8
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEe
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEP 261 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~ 261 (783)
..+.++|||+|||+++++++|+++|++||+|..|+ .+++++|| |.+.++|++||+.|||..|.|++|+|++
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34578999999999999999999999999999998 36778887 9999999999999999999999999999
Q ss_pred cCCCccc
Q 003964 262 SRPGGAR 268 (783)
Q Consensus 262 A~pr~~r 268 (783)
++++..+
T Consensus 147 a~~~~~~ 153 (158)
T 2kn4_A 147 ARYGRPP 153 (158)
T ss_dssp ECCSSCC
T ss_pred CCCCCCC
Confidence 9886543
No 118
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=3.5e-12 Score=112.06 Aligned_cols=75 Identities=21% Similarity=0.335 Sum_probs=66.0
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEecCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEecCCCc
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 266 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A~pr~ 266 (783)
..+.++|||+|| ++++++|+++|++||+|..|.. .+++|| |.+.++|++||+.|||..|.|++|+|++++++.
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe-cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 346789999996 8999999999999999999984 344555 999999999999999999999999999998876
Q ss_pred cc
Q 003964 267 AR 268 (783)
Q Consensus 267 ~r 268 (783)
.+
T Consensus 89 ~~ 90 (97)
T 1x5p_A 89 ML 90 (97)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 119
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.36 E-value=1.7e-12 Score=127.03 Aligned_cols=102 Identities=24% Similarity=0.421 Sum_probs=88.7
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEec
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPS 262 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A 262 (783)
.+.++|||+|||.++++++|+++|++||+|.+|+ .+++++|| |.+.++|++|++.|+|..|.|+.|+|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 3468999999999999999999999999999998 25667777 99999999999999999999999999998
Q ss_pred CCCcc---------------ccccccccccccCHHHHhhhhccCCC
Q 003964 263 RPGGA---------------RRNLMQQLNQELEQDEARGFRHQVGS 293 (783)
Q Consensus 263 ~pr~~---------------rr~~vqqlsq~~~qde~~~~fsq~Gs 293 (783)
..... +..++.+++...++++++.+|..+|.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~ 151 (216)
T 2qfj_A 106 SNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGK 151 (216)
T ss_dssp SCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSC
T ss_pred CCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCC
Confidence 76542 34578899999999999999999984
No 120
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.36 E-value=1.1e-12 Score=118.56 Aligned_cols=75 Identities=16% Similarity=0.276 Sum_probs=67.2
Q ss_pred CCCCEEEEecCCCCCCHHHHH---HHhhcCCCEEEEec--------CCCcccc----ccCHHHHHHHHHHhCCCeeCCcE
Q 003964 192 HPSRTLFVRNINSNVEDLELR---SLFEQYGDIRTLYT--------ACKHRGF----FYDVRAAEAALRALNRSDINGKR 256 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLr---elFsqfG~I~~v~~--------tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~ 256 (783)
...++|||+|||+++++++|+ ++|++||+|.+|+. .++++|| |.+.++|++||+.|||..|.|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 346899999999999999999 99999999999981 2245577 99999999999999999999999
Q ss_pred eEEEecCCCc
Q 003964 257 IKLEPSRPGG 266 (783)
Q Consensus 257 IkVe~A~pr~ 266 (783)
|+|++|+++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998875
No 121
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.36 E-value=1.2e-12 Score=117.65 Aligned_cols=76 Identities=20% Similarity=0.373 Sum_probs=67.3
Q ss_pred CCCCCEEEEecCCCC-CCHHHHHHHhhcCCCEEEEecCCCcccc--ccCHHHHHHHHHHhCCCeeCCcEeEEEecCCCcc
Q 003964 191 EHPSRTLFVRNINSN-VEDLELRSLFEQYGDIRTLYTACKHRGF--FYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 267 (783)
Q Consensus 191 e~psrtLFVGNLp~d-vTEeeLrelFsqfG~I~~v~~tgKsrGF--F~d~edAekAI~aLNG~~I~Gr~IkVe~A~pr~~ 267 (783)
..+.++|||+||+++ +++++|+++|++||+|..|.. .+..|| |.+.++|++||+.|||..|.|++|+|++++++..
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCCS
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCCC
Confidence 345689999999999 999999999999999999986 344455 9999999999999999999999999999986543
No 122
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.36 E-value=2.6e-12 Score=118.93 Aligned_cols=72 Identities=32% Similarity=0.559 Sum_probs=65.6
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEe
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEP 261 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~ 261 (783)
..+.++|||+|||.++++++|+++|++||+|+.|+ .+++++|| |.+.++|++|++.|||..|.|++|+|++
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34679999999999999999999999999999998 34677877 9999999999999999999999999998
Q ss_pred c
Q 003964 262 S 262 (783)
Q Consensus 262 A 262 (783)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 6
No 123
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.6e-12 Score=116.00 Aligned_cols=76 Identities=24% Similarity=0.308 Sum_probs=68.0
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCC-EEEEec------CCCcccc----ccCHHHHHHHHHHhC--CCeeCCcEeE
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGD-IRTLYT------ACKHRGF----FYDVRAAEAALRALN--RSDINGKRIK 258 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~-I~~v~~------tgKsrGF----F~d~edAekAI~aLN--G~~I~Gr~Ik 258 (783)
.+.++|||+|||+++++++|+++|++||. |..|.. +++++|| |.+.++|++|++.|+ +..+.|++|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35789999999999999999999999998 999872 3567777 999999999999996 5899999999
Q ss_pred EEecCCCcc
Q 003964 259 LEPSRPGGA 267 (783)
Q Consensus 259 Ve~A~pr~~ 267 (783)
|++|+++..
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999998764
No 124
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.36 E-value=6.2e-13 Score=116.86 Aligned_cols=76 Identities=26% Similarity=0.406 Sum_probs=67.0
Q ss_pred CCCCCEEEEecCCC-CCCHHHHHHHhhcCCCEEEEecCCCcccc--ccCHHHHHHHHHHhCCCeeCCcEeEEEecCCCcc
Q 003964 191 EHPSRTLFVRNINS-NVEDLELRSLFEQYGDIRTLYTACKHRGF--FYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 267 (783)
Q Consensus 191 e~psrtLFVGNLp~-dvTEeeLrelFsqfG~I~~v~~tgKsrGF--F~d~edAekAI~aLNG~~I~Gr~IkVe~A~pr~~ 267 (783)
..+.++|||+|||+ ++++++|+++|++||+|..|+.. +..|| |.+.++|++|++.|||..+.|++|+|++++++..
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNAR 85 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCC
Confidence 45689999999998 99999999999999999999852 44555 9999999999999999999999999999987653
No 125
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=4.8e-13 Score=120.69 Aligned_cols=75 Identities=19% Similarity=0.431 Sum_probs=67.8
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEec
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPS 262 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A 262 (783)
...++|||+||+.++++++|+++|++||.|+.|+ .+++++|| |.+.++|++|| .|||..|.|+.|+|+++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 4568999999999999999999999999999998 23677777 99999999999 99999999999999999
Q ss_pred CCCcc
Q 003964 263 RPGGA 267 (783)
Q Consensus 263 ~pr~~ 267 (783)
+++..
T Consensus 102 ~~~~~ 106 (114)
T 2cq4_A 102 QAEKN 106 (114)
T ss_dssp HHHHH
T ss_pred CCCcc
Confidence 87653
No 126
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.36 E-value=5.8e-13 Score=125.16 Aligned_cols=78 Identities=29% Similarity=0.519 Sum_probs=70.5
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEe
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEP 261 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~ 261 (783)
..+.++|||+|||.++++++|+++|++||+|+.|+ .+++++|| |.+.++|++||+.|||..|.|++|+|++
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45578999999999999999999999999999988 25677777 9999999999999999999999999999
Q ss_pred cCCCccc
Q 003964 262 SRPGGAR 268 (783)
Q Consensus 262 A~pr~~r 268 (783)
++++..+
T Consensus 124 a~~~~~~ 130 (135)
T 2lea_A 124 ARYGRPP 130 (135)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9886544
No 127
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.36 E-value=1.8e-12 Score=111.10 Aligned_cols=71 Identities=21% Similarity=0.471 Sum_probs=64.3
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEe
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEP 261 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~ 261 (783)
+.+.++|||+|||+++++++|+++|++||+|..|+ .+++++|| |.+.++|++|++ +++..|.|++|+|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 45679999999999999999999999999999988 35778887 999999999996 588899999999998
Q ss_pred c
Q 003964 262 S 262 (783)
Q Consensus 262 A 262 (783)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 6
No 128
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=2.7e-13 Score=115.83 Aligned_cols=73 Identities=27% Similarity=0.419 Sum_probs=66.1
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEec
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPS 262 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A 262 (783)
.++++|||+|||.++++++|+++|++||+|..|+ .+++++|| |.+.++|++|++.|||..|.|+.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 4578999999999999999999999999999987 35677777 99999999999999999999999998876
Q ss_pred CC
Q 003964 263 RP 264 (783)
Q Consensus 263 ~p 264 (783)
+.
T Consensus 83 ~s 84 (85)
T 1x4e_A 83 SS 84 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 129
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=2e-12 Score=112.81 Aligned_cols=75 Identities=23% Similarity=0.183 Sum_probs=66.3
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe--cCCC--cccc--ccCHHHHHHHHHHhCCCeeCCcEeEEEecCCC
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY--TACK--HRGF--FYDVRAAEAALRALNRSDINGKRIKLEPSRPG 265 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~--~tgK--srGF--F~d~edAekAI~aLNG~~I~Gr~IkVe~A~pr 265 (783)
...++|||+|||+++++++|+++|++||+|..|+ ...+ .+|| |.+.++|++||+.|||..|.|++|+|++++++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 3468999999999999999999999999999984 2222 2388 99999999999999999999999999999987
Q ss_pred c
Q 003964 266 G 266 (783)
Q Consensus 266 ~ 266 (783)
.
T Consensus 93 ~ 93 (96)
T 2e44_A 93 M 93 (96)
T ss_dssp C
T ss_pred c
Confidence 4
No 130
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=2.5e-12 Score=111.36 Aligned_cols=73 Identities=18% Similarity=0.303 Sum_probs=66.8
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEecC
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPSR 263 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A~ 263 (783)
...++|||+|||+++++++|+++|++| .|..|+ .+++++|| |.+.++|++||+ |||..|.|+.|+|.+++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 456899999999999999999999999 898887 46777887 999999999999 99999999999999998
Q ss_pred CCc
Q 003964 264 PGG 266 (783)
Q Consensus 264 pr~ 266 (783)
++.
T Consensus 86 ~~~ 88 (91)
T 2dgw_A 86 SGP 88 (91)
T ss_dssp SCC
T ss_pred cCC
Confidence 764
No 131
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.35 E-value=1.4e-12 Score=116.13 Aligned_cols=70 Identities=23% Similarity=0.312 Sum_probs=64.2
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEecCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEecC
Q 003964 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPSR 263 (783)
Q Consensus 193 psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A~ 263 (783)
.+..|||+||++.+||++|+++|.+||+|++++. ..+||| |.+.++|++||++||+.++.||+|+|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l-~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHP-YLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEE-cCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 3678999999999999999999999999999983 236777 999999999999999999999999999993
No 132
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.35 E-value=1.5e-12 Score=125.76 Aligned_cols=74 Identities=16% Similarity=0.320 Sum_probs=67.8
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCC--CEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEe
Q 003964 193 PSRTLFVRNINSNVEDLELRSLFEQYG--DIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEP 261 (783)
Q Consensus 193 psrtLFVGNLp~dvTEeeLrelFsqfG--~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~ 261 (783)
..++|||+||++++++++|+++|++|| +|.+|+ .+++++|| |.+.++|++||+.|||..|.|++|+|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999987 47888888 9999999999999999999999999999
Q ss_pred cCCCc
Q 003964 262 SRPGG 266 (783)
Q Consensus 262 A~pr~ 266 (783)
|+++.
T Consensus 134 a~~~~ 138 (156)
T 3n9u_C 134 ATRQN 138 (156)
T ss_dssp CCHHH
T ss_pred cCCCc
Confidence 98754
No 133
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.34 E-value=8.2e-13 Score=117.08 Aligned_cols=74 Identities=23% Similarity=0.466 Sum_probs=65.1
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEec------CCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEE
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT------ACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLE 260 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~~------tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe 260 (783)
....++|||+||+.++++++|+++|++|| |.+|+. +++++|| |.+.++|++|| .|||..|.|+.|+|+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 45679999999999999999999999999 999981 5677887 99999999999 899999999999999
Q ss_pred ecCCCc
Q 003964 261 PSRPGG 266 (783)
Q Consensus 261 ~A~pr~ 266 (783)
+++++.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 998764
No 134
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=4.5e-12 Score=112.16 Aligned_cols=75 Identities=15% Similarity=0.334 Sum_probs=67.3
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEe
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEP 261 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~ 261 (783)
..+.++|||+|||+++++++|+++|++||+|..|+ .+++++|| |.+.++|++||+ ++..|.|++|+|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 45678999999999999999999999999999987 35778887 999999999999 57899999999999
Q ss_pred cCCCcc
Q 003964 262 SRPGGA 267 (783)
Q Consensus 262 A~pr~~ 267 (783)
++++..
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 988754
No 135
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.34 E-value=2.1e-12 Score=118.39 Aligned_cols=76 Identities=17% Similarity=0.337 Sum_probs=68.8
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEec
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPS 262 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A 262 (783)
..++++|||+||+.++++++|+++|++||+|+.|+ .+++++|| |.+.++|++|++.|||..|.|+.|+|++|
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 35578999999999999999999999999999987 35667777 99999999999999999999999999999
Q ss_pred CCCc
Q 003964 263 RPGG 266 (783)
Q Consensus 263 ~pr~ 266 (783)
.+..
T Consensus 112 ~~~~ 115 (124)
T 2kt5_A 112 ASQI 115 (124)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 8754
No 136
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.34 E-value=3.4e-13 Score=139.20 Aligned_cols=172 Identities=14% Similarity=0.122 Sum_probs=118.0
Q ss_pred cCCCCCCCchhhhhccccCCCCCCCCCCCCccccccccCCCCcccccCCccccccccccccccCCCCCCCcccCCCCCCC
Q 003964 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLEDDLFDSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYPISNGV 180 (783)
Q Consensus 101 IGnLlpDddddllagv~d~~~~~~~~~~~dD~eDDiF~sgGGmeLe~d~~esls~~~~~~s~~dg~~~nG~~~yg~~n~~ 180 (783)
||||.++.+++.|..+|..+|.+..+....|.... ...+.+++. ..+.+..+.. .++....|..
T Consensus 46 V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~--~g~afV~f~--~~~~A~~A~~----~~~~~~~g~~-------- 109 (292)
T 2ghp_A 46 VKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKN--FRFARIEFA--RYDGALAAIT----KTHKVVGQNE-------- 109 (292)
T ss_dssp EEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSS--SEEEEEEES--SHHHHHHHHT----TTTCEETTEE--------
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCC--cEEEEEEEC--CHHHHHHHHH----hCCcEeCCcE--------
Confidence 99999999999999999999866433211111100 112233443 2222222221 1222212211
Q ss_pred CCcCCCCCCCCCCCCEEEEecCCCCCCHHHHHHHhhcCC-CEEEEe----cCCCcccc----ccCHHHHHHHHHHhCCCe
Q 003964 181 GTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYG-DIRTLY----TACKHRGF----FYDVRAAEAALRALNRSD 251 (783)
Q Consensus 181 g~~~ge~~~~e~psrtLFVGNLp~dvTEeeLrelFsqfG-~I~~v~----~tgKsrGF----F~d~edAekAI~aLNG~~ 251 (783)
+..+ ....++|||+|||.++++++|+++|++|| +|..|+ ..++++|| |.+.++|++|++.|+|..
T Consensus 110 --i~v~----~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 183 (292)
T 2ghp_A 110 --IIVS----HLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLK 183 (292)
T ss_dssp --CEEE----ECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCE
T ss_pred --EEEE----ECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 0000 12478999999999999999999999999 999998 23556766 999999999999999999
Q ss_pred eCCcEeEEEecCCCcc-----------ccccccccccc-cCHHHHhhhhccCCCC
Q 003964 252 INGKRIKLEPSRPGGA-----------RRNLMQQLNQE-LEQDEARGFRHQVGSP 294 (783)
Q Consensus 252 I~Gr~IkVe~A~pr~~-----------rr~~vqqlsq~-~~qde~~~~fsq~Gsp 294 (783)
+.|+.|+|.++.++.. +..++.+++.. .++++++.+|.++|..
T Consensus 184 ~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v 238 (292)
T 2ghp_A 184 IEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSI 238 (292)
T ss_dssp ETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCE
T ss_pred eCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCe
Confidence 9999999999976542 23467888989 9999999999999853
No 137
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.34 E-value=2.2e-12 Score=124.32 Aligned_cols=80 Identities=26% Similarity=0.432 Sum_probs=69.7
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEE
Q 003964 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLE 260 (783)
Q Consensus 190 ~e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe 260 (783)
...++++|||+|||+++++++|+++|++||+|..|. .+++++|| |.+.++|++||+.|||..|.|+.|+|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345678999999999999999999999999999988 36677777 999999999999999999999999999
Q ss_pred ecCCCcccc
Q 003964 261 PSRPGGARR 269 (783)
Q Consensus 261 ~A~pr~~rr 269 (783)
+++++..++
T Consensus 148 ~a~~~~~~~ 156 (165)
T 1rk8_A 148 WCFVKGPKR 156 (165)
T ss_dssp ESEECC---
T ss_pred EecCCCCCC
Confidence 998776443
No 138
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=2.3e-12 Score=112.57 Aligned_cols=72 Identities=22% Similarity=0.400 Sum_probs=65.0
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe---cCCCcccc--ccCHHHHHHHHHHhCCCeeCCcEeEEEecCCCc
Q 003964 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY---TACKHRGF--FYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 266 (783)
Q Consensus 193 psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~---~tgKsrGF--F~d~edAekAI~aLNG~~I~Gr~IkVe~A~pr~ 266 (783)
..++|||+|||+++++++|+++|++||+|.+|. .+++ .|| |.+.++|++||+ |||..|.|+.|+|+++.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 468999999999999999999999999999986 3444 777 999999999999 99999999999999987654
No 139
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=5.2e-12 Score=113.70 Aligned_cols=76 Identities=18% Similarity=0.356 Sum_probs=68.1
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe----cCCCcccc----ccCHHHHHHHHHHhCCCee--------CC
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY----TACKHRGF----FYDVRAAEAALRALNRSDI--------NG 254 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~----~tgKsrGF----F~d~edAekAI~aLNG~~I--------~G 254 (783)
+.+.++|||+|||.++++++|+++|++||+|..|+ .+++++|| |.+.++|++||+.|||..| .+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 45678999999999999999999999999999988 35677777 9999999999999999999 57
Q ss_pred cEeEEEecCCCc
Q 003964 255 KRIKLEPSRPGG 266 (783)
Q Consensus 255 r~IkVe~A~pr~ 266 (783)
++|+|.||.|+.
T Consensus 102 ~~l~v~~a~p~~ 113 (114)
T 1x5o_A 102 EPLLCKFSGPSS 113 (114)
T ss_dssp SCBEEEECCCSC
T ss_pred CceeEEccCCCC
Confidence 889999998753
No 140
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.33 E-value=2.6e-12 Score=121.48 Aligned_cols=76 Identities=30% Similarity=0.471 Sum_probs=68.4
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEecCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEecCCCc
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 266 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A~pr~ 266 (783)
..+.++|||+|||+++++++|+++|++||+|.+|+....++|| |.+.++|++||+.|||..|.|++|+|++++++.
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 4567999999999999999999999999999999844435555 999999999999999999999999999998864
No 141
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.33 E-value=3.1e-12 Score=120.75 Aligned_cols=101 Identities=23% Similarity=0.433 Sum_probs=87.5
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCC--Ccccc----ccCHHHHHHHHHHhCCCeeC---CcEeE
Q 003964 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TAC--KHRGF----FYDVRAAEAALRALNRSDIN---GKRIK 258 (783)
Q Consensus 193 psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tg--KsrGF----F~d~edAekAI~aLNG~~I~---Gr~Ik 258 (783)
+.++|||+|||+++++++|+++|++||+|.+|+ .++ +++|| |.+.++|++|++.|+|..+. ++.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 368999999999999999999999999999987 222 67777 99999999999999998876 68889
Q ss_pred EEecCCCc-----cccccccccccccCHHHHhhhhccCCC
Q 003964 259 LEPSRPGG-----ARRNLMQQLNQELEQDEARGFRHQVGS 293 (783)
Q Consensus 259 Ve~A~pr~-----~rr~~vqqlsq~~~qde~~~~fsq~Gs 293 (783)
|.++.+.. .+..++.+++...++++++.+|.++|.
T Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~ 121 (175)
T 3nmr_A 82 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ 121 (175)
T ss_dssp EEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSC
T ss_pred EccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCC
Confidence 98886543 244578899999999999999999985
No 142
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.33 E-value=6.3e-13 Score=117.29 Aligned_cols=77 Identities=27% Similarity=0.342 Sum_probs=67.5
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEecC
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPSR 263 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A~ 263 (783)
.+.++|||+|||+++++++|+++|++||.|..+. .+++++|| |.+.++|++||+ |||..|.|+.|+|++++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 4578999999999999999999999999876521 45777777 999999999999 99999999999999999
Q ss_pred CCcccc
Q 003964 264 PGGARR 269 (783)
Q Consensus 264 pr~~rr 269 (783)
++..++
T Consensus 94 ~~~~~~ 99 (101)
T 1fj7_A 94 GRDGTR 99 (101)
T ss_dssp CCCCSS
T ss_pred CCCCCC
Confidence 876543
No 143
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.33 E-value=3.5e-12 Score=128.43 Aligned_cols=102 Identities=21% Similarity=0.319 Sum_probs=85.6
Q ss_pred CCCCCEEEEecCCC-CCCHHHHHHHhhcCCCEEEEecCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEecCCC
Q 003964 191 EHPSRTLFVRNINS-NVEDLELRSLFEQYGDIRTLYTACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPSRPG 265 (783)
Q Consensus 191 e~psrtLFVGNLp~-dvTEeeLrelFsqfG~I~~v~~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A~pr 265 (783)
..++++|||+|||. ++++++|+++|++||.|.+|+.....+|| |.+.++|++|++.|||..+.|+.|+|++++++
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 35679999999999 99999999999999999999833333454 99999999999999999999999999999754
Q ss_pred c---------------------------------------cccccccccccccCHHHHhhhhccCC
Q 003964 266 G---------------------------------------ARRNLMQQLNQELEQDEARGFRHQVG 292 (783)
Q Consensus 266 ~---------------------------------------~rr~~vqqlsq~~~qde~~~~fsq~G 292 (783)
. .+..++.+++...++++++.+|.++|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G 176 (229)
T 2adc_A 111 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG 176 (229)
T ss_dssp CCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTS
T ss_pred cccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcC
Confidence 1 12235677778888889999998887
No 144
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.33 E-value=3e-12 Score=124.65 Aligned_cols=74 Identities=24% Similarity=0.359 Sum_probs=66.2
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCC-CEEEEecC--CCcccc--ccCHHHHHHHHHHhCCCeeC-CcEeEEEecCCC
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYG-DIRTLYTA--CKHRGF--FYDVRAAEAALRALNRSDIN-GKRIKLEPSRPG 265 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG-~I~~v~~t--gKsrGF--F~d~edAekAI~aLNG~~I~-Gr~IkVe~A~pr 265 (783)
+++++|||+|||.++++++|+++|++|| .|..|+.. .+..|| |.+.++|++|++.|||..+. |++|+|.|++++
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 5689999999999999999999999999 99998843 333444 99999999999999999999 999999999874
No 145
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.32 E-value=1.9e-12 Score=119.46 Aligned_cols=77 Identities=19% Similarity=0.249 Sum_probs=66.0
Q ss_pred CCCCCEEEEecCCCC-CCHHHHHHHhhcCCCEEEEec-CCCcccc--ccCHHHHHHHHHHhCC--CeeCCcEeEEEecCC
Q 003964 191 EHPSRTLFVRNINSN-VEDLELRSLFEQYGDIRTLYT-ACKHRGF--FYDVRAAEAALRALNR--SDINGKRIKLEPSRP 264 (783)
Q Consensus 191 e~psrtLFVGNLp~d-vTEeeLrelFsqfG~I~~v~~-tgKsrGF--F~d~edAekAI~aLNG--~~I~Gr~IkVe~A~p 264 (783)
..++++|||+|||++ +++++|+++|++||+|++|+. ..|..|| |.+.++|++||+.|++ ..|.||+|+|++|+.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 456899999999998 999999999999999999983 3344455 9999999999998864 569999999999987
Q ss_pred Ccc
Q 003964 265 GGA 267 (783)
Q Consensus 265 r~~ 267 (783)
+..
T Consensus 102 ~~~ 104 (112)
T 1x4f_A 102 YKK 104 (112)
T ss_dssp CSS
T ss_pred ccc
Confidence 653
No 146
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.32 E-value=1.3e-12 Score=123.59 Aligned_cols=148 Identities=14% Similarity=0.251 Sum_probs=96.8
Q ss_pred cCCCCCCCchhhhhccccCC----CCCCCCCCCCcccc-ccc--cCCCCcccccCCccccccccccccccCCCCCCCccc
Q 003964 101 IGSLLPDDENDLLAGLVDDF----DLRGLPSQLEDLED-DLF--DSGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAH 173 (783)
Q Consensus 101 IGnLlpDddddllagv~d~~----~~~~~~~~~dD~eD-DiF--~sgGGmeLe~d~~esls~~~~~~s~~dg~~~nG~~~ 173 (783)
||||.++.+++.|..+|..+ +....+ .....+ .+. ...+.+++... +.+..+. ..++....|..-
T Consensus 9 V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~--~~~v~~~~~~~~~g~afV~f~~~--~~A~~A~----~~~~~~~~g~~i 80 (172)
T 2g4b_A 9 VGNIPFGITEEAMMDFFNAQMRLGGLTQAP--GNPVLAVQINQDKNFAFLEFRSV--DETTQAM----AFDGIIFQGQSL 80 (172)
T ss_dssp EESCCTTCCHHHHHHHHHHHHHHTTCCSSS--SCSEEEEEEETTTTEEEEEESSH--HHHHHHG----GGTTCEETTEEC
T ss_pred EcCCCcccCHHHHHHHHHHHhhhcccccCC--CCceeeeEecCCCCEEEEEeCCH--HHHHHHH----HhCCcEecCcee
Confidence 99999999999999999988 432111 001111 111 12233444322 2222222 122222122210
Q ss_pred CCCCCCCCCcCCCCCCCCCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHH
Q 003964 174 YPISNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAAL 244 (783)
Q Consensus 174 yg~~n~~g~~~ge~~~~e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI 244 (783)
. . ............++|||+|||.++++++|+++|++||+|..|+ .+++++|| |.+.++|++|+
T Consensus 81 ~-v------~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~ 153 (172)
T 2g4b_A 81 K-I------RRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAI 153 (172)
T ss_dssp E-E------ECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHH
T ss_pred e-e------cCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Confidence 0 0 0001111223468999999999999999999999999999988 36777877 99999999999
Q ss_pred HHhCCCeeCCcEeEEEecC
Q 003964 245 RALNRSDINGKRIKLEPSR 263 (783)
Q Consensus 245 ~aLNG~~I~Gr~IkVe~A~ 263 (783)
+.|||..+.|++|+|++|.
T Consensus 154 ~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 154 AGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HHHTTCEETTEECEEEECC
T ss_pred HHcCCCEECCeEEEEEeCC
Confidence 9999999999999999973
No 147
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.32 E-value=4.5e-13 Score=125.23 Aligned_cols=147 Identities=18% Similarity=0.191 Sum_probs=96.0
Q ss_pred cCCCCCCCchhhhhccccCCCCCCCCCCCCccccccccCCCCcccccCCccccccccccccccCCCCCCCc---ccCCCC
Q 003964 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLEDDLFDSGGGMELEFEPHESLSIGVSKLNISDGIAGTGI---AHYPIS 177 (783)
Q Consensus 101 IGnLlpDddddllagv~d~~~~~~~~~~~dD~eDDiF~sgGGmeLe~d~~esls~~~~~~s~~dg~~~nG~---~~yg~~ 177 (783)
||||.++.+++.|..+|..+|.+.......|.........+.+++... +.+..+... .++....+. ..+.
T Consensus 7 v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~--~~A~~a~~~---l~~~~~~g~~l~v~~~-- 79 (167)
T 1fxl_A 7 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP--KDAEKAINT---LNGLRLQTKTIKVSYA-- 79 (167)
T ss_dssp EESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSH--HHHHHHHHH---HTTCEETTEECEEEEC--
T ss_pred EcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCH--HHHHHHHHH---cCCCccCCceEEEEec--
Confidence 899999999999999999998654322111111111111233444322 222222211 122111111 1111
Q ss_pred CCCCCcCCCCCCCCCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhC
Q 003964 178 NGVGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALN 248 (783)
Q Consensus 178 n~~g~~~ge~~~~e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLN 248 (783)
.......+.++|||+|||.++++++|+++|++||.|..++ .+++++|| |.+.++|++|++.||
T Consensus 80 --------~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 151 (167)
T 1fxl_A 80 --------RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 151 (167)
T ss_dssp --------CCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred --------CCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhc
Confidence 1111234568999999999999999999999999999987 25677777 999999999999999
Q ss_pred CCeeCCcE--eEEEec
Q 003964 249 RSDINGKR--IKLEPS 262 (783)
Q Consensus 249 G~~I~Gr~--IkVe~A 262 (783)
|..+.|+. |+|+||
T Consensus 152 g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 152 GQKPSGATEPITVKFA 167 (167)
T ss_dssp TCCCTTCSSCCEEEEC
T ss_pred CCccCCCccceEEEeC
Confidence 99999965 888876
No 148
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.32 E-value=2.1e-12 Score=121.47 Aligned_cols=100 Identities=21% Similarity=0.408 Sum_probs=88.1
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEecC
Q 003964 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPSR 263 (783)
Q Consensus 193 psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A~ 263 (783)
++++|||+|||.++++++|+++|++||+|.+|+ .+++++|| |.+.++|++|++. +..+.|+.|+|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 468999999999999999999999999999998 35777887 9999999999994 678999999999998
Q ss_pred CCc----cccccccccccccCHHHHhhhhccCCCC
Q 003964 264 PGG----ARRNLMQQLNQELEQDEARGFRHQVGSP 294 (783)
Q Consensus 264 pr~----~rr~~vqqlsq~~~qde~~~~fsq~Gsp 294 (783)
++. .+..++.+++...++++++.+|.++|..
T Consensus 80 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i 114 (167)
T 2cjk_A 80 PRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTI 114 (167)
T ss_dssp CHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCC
T ss_pred chhhccCCCeEEECCCCCCCCHHHHHHHHHhCccE
Confidence 654 2345788999999999999999999854
No 149
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=2.4e-12 Score=116.49 Aligned_cols=76 Identities=22% Similarity=0.444 Sum_probs=68.5
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEec
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPS 262 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A 262 (783)
.+.++|||+|||+++++++|+++|++||+|..|+ .+++++|| |.+.++|++||+. ++..|.|+.|+|+++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 3468999999999999999999999999999987 34677777 9999999999997 999999999999999
Q ss_pred CCCccc
Q 003964 263 RPGGAR 268 (783)
Q Consensus 263 ~pr~~r 268 (783)
+++..+
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 987644
No 150
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.31 E-value=1.1e-12 Score=111.63 Aligned_cols=67 Identities=13% Similarity=0.322 Sum_probs=61.0
Q ss_pred CCEEEEecCCCCC------CHHHHHHHhhcCCCEEEEe---cCCCcccc----ccCHHHHHHHHHHhCCCeeCCc-EeEE
Q 003964 194 SRTLFVRNINSNV------EDLELRSLFEQYGDIRTLY---TACKHRGF----FYDVRAAEAALRALNRSDINGK-RIKL 259 (783)
Q Consensus 194 srtLFVGNLp~dv------TEeeLrelFsqfG~I~~v~---~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr-~IkV 259 (783)
+++|||+|||..+ ++++|+++|++||+|.+|+ .+++++|| |.+.++|++||+.|||..|.|+ +|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 3799999999999 7799999999999999998 46677887 9999999999999999999999 8887
Q ss_pred E
Q 003964 260 E 260 (783)
Q Consensus 260 e 260 (783)
.
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 151
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.31 E-value=2.2e-12 Score=121.04 Aligned_cols=77 Identities=22% Similarity=0.412 Sum_probs=68.2
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEE--------e--cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEe
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTL--------Y--TACKHRGF----FYDVRAAEAALRALNRSDINGKRI 257 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v--------~--~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~I 257 (783)
.++++|||+|||+++++++|+++|++||.|..| + .+++++|| |.+.++|++||+.|||..|.|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 457899999999999999999999999998653 2 56888887 999999999999999999999999
Q ss_pred EEEecCCCccc
Q 003964 258 KLEPSRPGGAR 268 (783)
Q Consensus 258 kVe~A~pr~~r 268 (783)
+|++|++...+
T Consensus 123 ~V~~a~~~~~~ 133 (143)
T 3egn_A 123 VVQFARSARPK 133 (143)
T ss_dssp EEEECCCSCC-
T ss_pred EEEECCCCCCc
Confidence 99999876544
No 152
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=5e-12 Score=112.99 Aligned_cols=75 Identities=16% Similarity=0.182 Sum_probs=67.1
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEE-Ee----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEe
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRT-LY----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEP 261 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~-v~----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~ 261 (783)
....++|||+|||+++++++|+++|++||.|.. |+ .+++++|| |.+.++|++||+. ++..|.||.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 345789999999999999999999999999987 65 47888888 9999999999997 99999999999999
Q ss_pred cCCCc
Q 003964 262 SRPGG 266 (783)
Q Consensus 262 A~pr~ 266 (783)
+.++.
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 87654
No 153
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.31 E-value=2.6e-12 Score=121.68 Aligned_cols=72 Identities=19% Similarity=0.279 Sum_probs=64.3
Q ss_pred CEEEEecCCCCCCHHHHHHHhhcCCCEEEEecCCCccc---c--ccCHHHHHHHHHHhCCCeeCC--cEeEEEecCCCc
Q 003964 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRG---F--FYDVRAAEAALRALNRSDING--KRIKLEPSRPGG 266 (783)
Q Consensus 195 rtLFVGNLp~dvTEeeLrelFsqfG~I~~v~~tgKsrG---F--F~d~edAekAI~aLNG~~I~G--r~IkVe~A~pr~ 266 (783)
-+|||+||++.+|+++|+++|++||+|.+|+...+.+| | |.+.++|++|+++|||..|.| ++|+|+||+++.
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 46789999999999999999999999999984334454 4 999999999999999999998 999999999875
No 154
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.31 E-value=1.6e-12 Score=108.47 Aligned_cols=66 Identities=26% Similarity=0.492 Sum_probs=61.4
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEec
Q 003964 196 TLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPS 262 (783)
Q Consensus 196 tLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A 262 (783)
+|||+|||+++++++|+++|++||+|..|+ .+++++|| |.+.++|++|++ |+|..|.|++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 599999999999999999999999999988 36777887 999999999998 9999999999999986
No 155
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.31 E-value=1.8e-12 Score=114.33 Aligned_cols=73 Identities=34% Similarity=0.512 Sum_probs=65.0
Q ss_pred CEEEEecCCCCCCHHHHHHHhhcCCCEEEEecCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEecCCCcc
Q 003964 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 267 (783)
Q Consensus 195 rtLFVGNLp~dvTEeeLrelFsqfG~I~~v~~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A~pr~~ 267 (783)
++|||+|||.++++++|+++|++||+|..|+....++|| |.+.++|++|++.|||..+.|+.|+|++++++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 589999999999999999999999999998832224555 9999999999999999999999999999988653
No 156
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.31 E-value=3.9e-12 Score=116.18 Aligned_cols=73 Identities=23% Similarity=0.477 Sum_probs=67.1
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEecC
Q 003964 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPSR 263 (783)
Q Consensus 193 psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A~ 263 (783)
+.++|||+||+.++++++|+++|++||+|.+|+ .+++++|| |.+.++|++|| .|||..|.|+.|+|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 468999999999999999999999999999987 36778887 99999999999 799999999999999998
Q ss_pred CCc
Q 003964 264 PGG 266 (783)
Q Consensus 264 pr~ 266 (783)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 157
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.30 E-value=3.5e-12 Score=110.36 Aligned_cols=72 Identities=17% Similarity=0.373 Sum_probs=64.9
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEecCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEecCCCc
Q 003964 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 266 (783)
Q Consensus 193 psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A~pr~ 266 (783)
..++|||+|||+++++++|+++|++| +|..|+.. +++|| |.+.++|++|++.|||..+.|++|+|+++..+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 46899999999999999999999999 99988742 56666 999999999999999999999999999997643
No 158
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=3.8e-12 Score=117.99 Aligned_cols=75 Identities=17% Similarity=0.254 Sum_probs=66.0
Q ss_pred CCCCCEEEE--ecCCCCCCHHHHHHHhhcCCCEEEEe-cCCCcccc--ccCHHHHHHHHHHhCCCee-----CCcEeEEE
Q 003964 191 EHPSRTLFV--RNINSNVEDLELRSLFEQYGDIRTLY-TACKHRGF--FYDVRAAEAALRALNRSDI-----NGKRIKLE 260 (783)
Q Consensus 191 e~psrtLFV--GNLp~dvTEeeLrelFsqfG~I~~v~-~tgKsrGF--F~d~edAekAI~aLNG~~I-----~Gr~IkVe 260 (783)
..++++||| |||++++++++|+++|++||+|..|. .++|..|| |.+.++|++|+++|||+++ .|+.|.|.
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~ 101 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 101 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEE
Confidence 346789999 77999999999999999999999998 44555566 9999999999999999998 68999999
Q ss_pred ecCCC
Q 003964 261 PSRPG 265 (783)
Q Consensus 261 ~A~pr 265 (783)
+++..
T Consensus 102 ~a~~~ 106 (114)
T 2cq2_A 102 FVEKV 106 (114)
T ss_dssp EESCC
T ss_pred ecccC
Confidence 99754
No 159
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.29 E-value=5.6e-12 Score=122.73 Aligned_cols=99 Identities=21% Similarity=0.357 Sum_probs=82.7
Q ss_pred CCEEEEecCCC-CCCHHHHHHHhhcCCCEEEEecCCCccc--c--ccCHHHHHHHHHHhCCCeeCCcEeEEEecCCCc--
Q 003964 194 SRTLFVRNINS-NVEDLELRSLFEQYGDIRTLYTACKHRG--F--FYDVRAAEAALRALNRSDINGKRIKLEPSRPGG-- 266 (783)
Q Consensus 194 srtLFVGNLp~-dvTEeeLrelFsqfG~I~~v~~tgKsrG--F--F~d~edAekAI~aLNG~~I~Gr~IkVe~A~pr~-- 266 (783)
+++|||+|||. ++++++|+++|++||.|.+|+.....+| | |.+.++|++|++.|||..+.|+.|+|.++++..
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 82 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQ 82 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcC
Confidence 58999999999 9999999999999999999983333344 4 999999999999999999999999999997542
Q ss_pred -------------------------------------cccccccccccccCHHHHhhhhccCC
Q 003964 267 -------------------------------------ARRNLMQQLNQELEQDEARGFRHQVG 292 (783)
Q Consensus 267 -------------------------------------~rr~~vqqlsq~~~qde~~~~fsq~G 292 (783)
.+..++.+++...++++++.+|..+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G 145 (198)
T 1qm9_A 83 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG 145 (198)
T ss_dssp CSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTT
T ss_pred CCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcC
Confidence 11234667777788888888888887
No 160
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=2.5e-12 Score=115.97 Aligned_cols=73 Identities=8% Similarity=0.204 Sum_probs=66.2
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEec
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPS 262 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A 262 (783)
+.+.++|||+|||+++|+++|+++|++||+|..|+ ..++++|| |.+.++|++||+ ++|..|.|+.|+|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 34568999999999999999999999999999998 23778887 999999999999 9999999999999998
Q ss_pred CC
Q 003964 263 RP 264 (783)
Q Consensus 263 ~p 264 (783)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 65
No 161
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.29 E-value=6.2e-13 Score=114.74 Aligned_cols=71 Identities=23% Similarity=0.497 Sum_probs=62.9
Q ss_pred CEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEecCCC
Q 003964 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPSRPG 265 (783)
Q Consensus 195 rtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A~pr 265 (783)
++|||+|||.++++++|+++|++||+|..|+ .+++++|| |.+.+ |++|++.|||..+.|++|+|++|.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 6899999999999999999999999999987 34777887 99999 99999999999999999999999876
Q ss_pred c
Q 003964 266 G 266 (783)
Q Consensus 266 ~ 266 (783)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 162
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.29 E-value=1.6e-12 Score=108.62 Aligned_cols=67 Identities=21% Similarity=0.447 Sum_probs=61.8
Q ss_pred CEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEec
Q 003964 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPS 262 (783)
Q Consensus 195 rtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A 262 (783)
++|||+|||.++++++|+++|++||+|..|. .+++++|| |.+.++|++|++.++ ..+.|++|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 5799999999999999999999999999887 35677777 999999999999999 9999999999987
No 163
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.28 E-value=5.6e-12 Score=123.76 Aligned_cols=73 Identities=18% Similarity=0.228 Sum_probs=65.0
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhcCCCEEEEec-CCCcccc----ccCHHHHHHHHHHhCCCeeCC--cEeEEEecCCCc
Q 003964 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYT-ACKHRGF----FYDVRAAEAALRALNRSDING--KRIKLEPSRPGG 266 (783)
Q Consensus 194 srtLFVGNLp~dvTEeeLrelFsqfG~I~~v~~-tgKsrGF----F~d~edAekAI~aLNG~~I~G--r~IkVe~A~pr~ 266 (783)
-.+|||+||++++++++|+++|++||+|++|+. +++++|| |.+.++|++|++.|||.+|.| ++|+|+|++++.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 457999999999999999999999999999983 3445555 999999999999999999965 999999999875
No 164
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.28 E-value=1.1e-11 Score=127.18 Aligned_cols=100 Identities=20% Similarity=0.377 Sum_probs=89.1
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEecCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEecCCCcc
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPSRPGGA 267 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A~pr~~ 267 (783)
.+.++|||+|||.++|+++|+++|++||.|..|.. .+++|| |.+.++|++|++.|||..|.|+.|+|.++.+..
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~- 97 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFI-NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGA- 97 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCSS-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE-eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccCC-
Confidence 45689999999999999999999999999999973 334555 999999999999999999999999999998753
Q ss_pred ccccccccccccCHHHHhhhhccCCCC
Q 003964 268 RRNLMQQLNQELEQDEARGFRHQVGSP 294 (783)
Q Consensus 268 rr~~vqqlsq~~~qde~~~~fsq~Gsp 294 (783)
+.++.+++...+.++++.+|..+|..
T Consensus 98 -~l~v~nl~~~~t~~~l~~~F~~~G~i 123 (261)
T 3sde_A 98 -ALTVKNLSPVVSNELLEQAFSQFGPV 123 (261)
T ss_dssp -EEEEESCCTTCCHHHHHHHHGGGSCE
T ss_pred -cccccCCCCCCCHHHHHHHHHhcCCe
Confidence 45889999999999999999999853
No 165
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.28 E-value=5.2e-12 Score=127.14 Aligned_cols=74 Identities=24% Similarity=0.359 Sum_probs=66.4
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCC-CEEEEecC--CCcccc--ccCHHHHHHHHHHhCCCeeC-CcEeEEEecCCC
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYG-DIRTLYTA--CKHRGF--FYDVRAAEAALRALNRSDIN-GKRIKLEPSRPG 265 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG-~I~~v~~t--gKsrGF--F~d~edAekAI~aLNG~~I~-Gr~IkVe~A~pr 265 (783)
.++++|||+||+.++++++|+++|++|| +|..|+.. .+..|| |.+.++|++|++.|||..+. |++|+|.|++++
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 4579999999999999999999999999 99999843 334445 99999999999999999999 999999999874
No 166
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.27 E-value=2e-12 Score=122.98 Aligned_cols=103 Identities=24% Similarity=0.293 Sum_probs=87.2
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEec
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPS 262 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A 262 (783)
..+.++|||+|||.++++++|+++|++||.|..+. .+++++|| |.+.++|++|++ |||..+.|++|+|.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecC
Confidence 34579999999999999999999999998654421 45677777 999999999995 9999999999999999
Q ss_pred CCCcc------ccccccccccccCHHHHhhhhccCCCC
Q 003964 263 RPGGA------RRNLMQQLNQELEQDEARGFRHQVGSP 294 (783)
Q Consensus 263 ~pr~~------rr~~vqqlsq~~~qde~~~~fsq~Gsp 294 (783)
.++.. +..++.+++...++++++.+|.++|..
T Consensus 89 ~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v 126 (175)
T 1fje_B 89 KGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEI 126 (175)
T ss_dssp CCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEE
T ss_pred CCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeE
Confidence 86542 345788999999999999999988743
No 167
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.93 E-value=3.7e-13 Score=122.03 Aligned_cols=77 Identities=26% Similarity=0.378 Sum_probs=68.9
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEE--------Ee-----cCCCcccc----ccCHHHHHHHHHHhCCCeeC
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRT--------LY-----TACKHRGF----FYDVRAAEAALRALNRSDIN 253 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~--------v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~ 253 (783)
..+.++|||+|||.++++++|+++|++||.|.. |+ .+++++|| |.+.++|++||+.|||..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 456789999999999999999999999999988 55 34677777 99999999999999999999
Q ss_pred CcEeEEEecCCCcc
Q 003964 254 GKRIKLEPSRPGGA 267 (783)
Q Consensus 254 Gr~IkVe~A~pr~~ 267 (783)
|++|+|++++++..
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999987653
No 168
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=9.8e-12 Score=112.04 Aligned_cols=73 Identities=23% Similarity=0.376 Sum_probs=63.2
Q ss_pred CCCCE-EEEecCCCCCCHHH----HHHHhhcC-CCEEEEecCCCcccc--ccCHHHHHHHHHHhCCCeeCCcEeEEEecC
Q 003964 192 HPSRT-LFVRNINSNVEDLE----LRSLFEQY-GDIRTLYTACKHRGF--FYDVRAAEAALRALNRSDINGKRIKLEPSR 263 (783)
Q Consensus 192 ~psrt-LFVGNLp~dvTEee----LrelFsqf-G~I~~v~~tgKsrGF--F~d~edAekAI~aLNG~~I~Gr~IkVe~A~ 263 (783)
+|+.| |||+|||+++++++ |+++|++| |+|.+| ++ ..|| |.+.++|++|++.|||.++.||+|+|++|+
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--tg-G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~ 82 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--TG-CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTP 82 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--CT-TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--ec-CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecC
Confidence 34566 99999999999988 55899999 599998 34 4445 999999999999999999999999999998
Q ss_pred CCcc
Q 003964 264 PGGA 267 (783)
Q Consensus 264 pr~~ 267 (783)
.+..
T Consensus 83 ~~sd 86 (96)
T 2diu_A 83 KNRE 86 (96)
T ss_dssp CSCC
T ss_pred CCcc
Confidence 8753
No 169
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.26 E-value=6e-12 Score=114.72 Aligned_cols=75 Identities=15% Similarity=0.234 Sum_probs=61.9
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEecCCCcccc--ccCHHHHHHHHHHhCCCeeCCcE-----eEEEecCC
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGF--FYDVRAAEAALRALNRSDINGKR-----IKLEPSRP 264 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~~tgKsrGF--F~d~edAekAI~aLNG~~I~Gr~-----IkVe~A~p 264 (783)
...++|||+|||+++++++|+++|++||+|+.|.......|| |.+.++|++||+.|||++|.|++ |+|+.+.+
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~ 93 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 93 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC-
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCC
Confidence 346899999999999999999999999999999843334555 99999999999999999999998 77777666
Q ss_pred Cc
Q 003964 265 GG 266 (783)
Q Consensus 265 r~ 266 (783)
+.
T Consensus 94 ~~ 95 (115)
T 3beg_B 94 RS 95 (115)
T ss_dssp --
T ss_pred CC
Confidence 44
No 170
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=3.4e-12 Score=117.34 Aligned_cols=75 Identities=15% Similarity=0.248 Sum_probs=66.5
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEe
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEP 261 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~ 261 (783)
..+.++|||+|||+++++++|+++|++||.|..+. .+++++|| |.+.++|++||+ |||..|.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 34568999999999999999999999999986532 57888888 999999999999 999999999999999
Q ss_pred cCCCc
Q 003964 262 SRPGG 266 (783)
Q Consensus 262 A~pr~ 266 (783)
+.++.
T Consensus 101 a~~~~ 105 (124)
T 1wel_A 101 ITKKG 105 (124)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 97643
No 171
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=3.9e-12 Score=115.44 Aligned_cols=75 Identities=13% Similarity=0.162 Sum_probs=66.2
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCE-EEEe----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEe
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDI-RTLY----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEP 261 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I-~~v~----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~ 261 (783)
..+.++|||+|||+++++++|+++|++||.| ..|+ .+++++|| |.+.++|++||+. |+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 3457899999999999999999999999999 5554 45778887 9999999999996 99999999999999
Q ss_pred cCCCc
Q 003964 262 SRPGG 266 (783)
Q Consensus 262 A~pr~ 266 (783)
+.++.
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 98754
No 172
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.24 E-value=1.8e-11 Score=107.08 Aligned_cols=74 Identities=26% Similarity=0.512 Sum_probs=57.7
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEecCCCcccc----ccCHHHHHHHHHHhCCCe--eCCcEeEEEecCC
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGF----FYDVRAAEAALRALNRSD--INGKRIKLEPSRP 264 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~~tgKsrGF----F~d~edAekAI~aLNG~~--I~Gr~IkVe~A~p 264 (783)
..+.++|||+|||+++++++|+++|++||+|++|+...++||| |.+.++|++ |++.. +.|++|+|.+|++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCC
Confidence 4567899999999999999999999999999999955557777 999988873 56665 4599999999998
Q ss_pred Cccc
Q 003964 265 GGAR 268 (783)
Q Consensus 265 r~~r 268 (783)
+..+
T Consensus 84 k~~~ 87 (89)
T 3d2w_A 84 KHNK 87 (89)
T ss_dssp ----
T ss_pred CCcC
Confidence 7643
No 173
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.24 E-value=1e-11 Score=113.84 Aligned_cols=73 Identities=10% Similarity=0.115 Sum_probs=65.3
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCC---EEEEe----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEE
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGD---IRTLY----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLE 260 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~---I~~v~----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe 260 (783)
...++|||+|||+++++++|+++|++||. |..|+ ..++++|| |.+.++|++||+ ||+..|.||.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 45689999999999999999999999998 66665 34788888 999999999999 99999999999999
Q ss_pred ecCCC
Q 003964 261 PSRPG 265 (783)
Q Consensus 261 ~A~pr 265 (783)
++.++
T Consensus 94 ~a~~~ 98 (118)
T 2db1_A 94 KSHRT 98 (118)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98643
No 174
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.24 E-value=2.8e-11 Score=113.50 Aligned_cols=71 Identities=24% Similarity=0.266 Sum_probs=62.1
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCEEEEecCCC-c-ccc--ccCHHHHHHHHHHhCCCeeCC--cEeEEEecCCCc
Q 003964 196 TLFVRNINSNVEDLELRSLFEQYGDIRTLYTACK-H-RGF--FYDVRAAEAALRALNRSDING--KRIKLEPSRPGG 266 (783)
Q Consensus 196 tLFVGNLp~dvTEeeLrelFsqfG~I~~v~~tgK-s-rGF--F~d~edAekAI~aLNG~~I~G--r~IkVe~A~pr~ 266 (783)
.|||+||++.+++++|+++|++||+|++|+...+ . .|| |.+.++|++|+++|||.+|.| +.|+|++|+++.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 4689999999999999999999999999983222 2 255 999999999999999999987 699999999875
No 175
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.23 E-value=4e-12 Score=112.32 Aligned_cols=75 Identities=25% Similarity=0.573 Sum_probs=67.3
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEe
Q 003964 190 GEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEP 261 (783)
Q Consensus 190 ~e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~ 261 (783)
.+.+.++|||+|||+++++++|+++|++||.|..|+ .+++++|| |.+.++|++|++ ++..++|+.|+|.+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 344578999999999999999999999999999988 35677887 999999999999 99999999999999
Q ss_pred cCCCc
Q 003964 262 SRPGG 266 (783)
Q Consensus 262 A~pr~ 266 (783)
+.++.
T Consensus 83 a~~~~ 87 (102)
T 2xs2_A 83 AIRKQ 87 (102)
T ss_dssp EEECC
T ss_pred CCcCc
Confidence 98765
No 176
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.23 E-value=5.9e-12 Score=128.55 Aligned_cols=74 Identities=16% Similarity=0.280 Sum_probs=67.5
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCC--CEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEe
Q 003964 193 PSRTLFVRNINSNVEDLELRSLFEQYG--DIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEP 261 (783)
Q Consensus 193 psrtLFVGNLp~dvTEeeLrelFsqfG--~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~ 261 (783)
..++|||+||++++++++|+++|++|| +|++|+ .++++||| |.+.++|++||+.|||+.|.|++|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 467999999999999999999999999 999988 47888888 9999999999999999999999999999
Q ss_pred cCCCc
Q 003964 262 SRPGG 266 (783)
Q Consensus 262 A~pr~ 266 (783)
|++..
T Consensus 147 a~~~~ 151 (229)
T 3q2s_C 147 VNKQF 151 (229)
T ss_dssp CCHHH
T ss_pred CCCCc
Confidence 98654
No 177
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.22 E-value=1.3e-11 Score=126.71 Aligned_cols=73 Identities=25% Similarity=0.395 Sum_probs=65.1
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEecC-CC-cccc--ccCHHHHHHHHHHhCCCeeC-CcEeEEEecC
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTA-CK-HRGF--FYDVRAAEAALRALNRSDIN-GKRIKLEPSR 263 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~~t-gK-srGF--F~d~edAekAI~aLNG~~I~-Gr~IkVe~A~ 263 (783)
..++++|||+||+.++++++|+++|++||.|++|+.. .+ ..|| |.+.++|++|++.|||..|. |+.|+|+||+
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 3467899999999999999999999999999999832 22 3455 99999999999999999999 9999999986
No 178
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=1.2e-11 Score=110.91 Aligned_cols=73 Identities=12% Similarity=0.249 Sum_probs=65.0
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEecC
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPSR 263 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A~ 263 (783)
.+.++|||+|||+++++++|+++|++||.| .|+ .+++++|| |.+.++|++||+ +|+..|.||.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 446899999999999999999999999955 666 56788888 999999999995 89999999999999987
Q ss_pred CCc
Q 003964 264 PGG 266 (783)
Q Consensus 264 pr~ 266 (783)
+..
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 655
No 179
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.20 E-value=2.1e-11 Score=119.90 Aligned_cols=76 Identities=17% Similarity=0.337 Sum_probs=68.6
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEec
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPS 262 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A 262 (783)
..++++|||+||++++++++|+++|++||+|+.|. .+++++|| |.+.++|++||+.|||..|.|+.|+|++|
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34578999999999999999999999999999988 34667777 99999999999999999999999999999
Q ss_pred CCCc
Q 003964 263 RPGG 266 (783)
Q Consensus 263 ~pr~ 266 (783)
.+..
T Consensus 165 ~~~~ 168 (177)
T 2f3j_A 165 ASQI 168 (177)
T ss_dssp SSGG
T ss_pred cCCC
Confidence 8653
No 180
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.20 E-value=2.3e-11 Score=112.48 Aligned_cols=75 Identities=21% Similarity=0.335 Sum_probs=65.2
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEecCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEecCCCc
Q 003964 191 EHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 266 (783)
Q Consensus 191 e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A~pr~ 266 (783)
..++++|||+|| ++++++|+++|++||+|.+|+. .+++|| |.+.++|++||+.|||..|.|++|+|++++++.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i-~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEE-eCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 356799999996 7999999999999999999874 244555 999999999999999999999999999999875
Q ss_pred cc
Q 003964 267 AR 268 (783)
Q Consensus 267 ~r 268 (783)
..
T Consensus 113 ~~ 114 (121)
T 2bz2_A 113 ML 114 (121)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 181
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.20 E-value=6.3e-12 Score=104.65 Aligned_cols=66 Identities=15% Similarity=0.440 Sum_probs=60.2
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEec
Q 003964 196 TLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPS 262 (783)
Q Consensus 196 tLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A 262 (783)
||||+|||.++++++|+++|++||+|..|. .+++++|| |.+.++|++|++ +++..+.|++|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 699999999999999999999999999987 34677777 999999999999 5899999999999876
No 182
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.20 E-value=9.6e-12 Score=118.04 Aligned_cols=74 Identities=9% Similarity=0.086 Sum_probs=65.9
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCC---EEEEe----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEE
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGD---IRTLY----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLE 260 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~---I~~v~----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe 260 (783)
...++|||+|||+++|+++|+++|++||. |..|+ ..++++|| |.+.++|++||+ ||+..|.||.|+|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 45689999999999999999999999998 66655 34888888 999999999999 99999999999999
Q ss_pred ecCCCc
Q 003964 261 PSRPGG 266 (783)
Q Consensus 261 ~A~pr~ 266 (783)
++.++.
T Consensus 121 ~a~~~e 126 (136)
T 2hgl_A 121 KSHRTE 126 (136)
T ss_dssp ECCHHH
T ss_pred ECChHH
Confidence 987543
No 183
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=1.9e-11 Score=105.32 Aligned_cols=74 Identities=26% Similarity=0.437 Sum_probs=60.4
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEecCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEecCCCccc
Q 003964 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPSRPGGAR 268 (783)
Q Consensus 193 psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A~pr~~r 268 (783)
++++|||+|||+++++++|+++|++||+|.+|+...+++|| |.+.++|++|+.. ...+.|++|+|.+++++..+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~~ 81 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHNS 81 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCCC
Confidence 46899999999999999999999999999999854446666 9999998754321 23458999999999887643
No 184
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.18 E-value=3.3e-11 Score=102.83 Aligned_cols=69 Identities=22% Similarity=0.376 Sum_probs=60.3
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcC----C-------CEEEEec-CCCcccc--ccCHHHHHHHHHHhCCCeeCCcEe
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQY----G-------DIRTLYT-ACKHRGF--FYDVRAAEAALRALNRSDINGKRI 257 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqf----G-------~I~~v~~-tgKsrGF--F~d~edAekAI~aLNG~~I~Gr~I 257 (783)
.+.++|||+|||+++++++|+++|++| | +|.+++. ..+..|| |.+.++|++|+ .|||..+.|++|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l 82 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 82 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEE
Confidence 346899999999999999999999999 8 9999873 2233444 99999999999 999999999999
Q ss_pred EEEe
Q 003964 258 KLEP 261 (783)
Q Consensus 258 kVe~ 261 (783)
+|+.
T Consensus 83 ~V~r 86 (87)
T 2hzc_A 83 KIRR 86 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9973
No 185
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.17 E-value=1.1e-11 Score=111.41 Aligned_cols=74 Identities=9% Similarity=0.055 Sum_probs=65.7
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCC---EEEEe----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEE
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGD---IRTLY----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLE 260 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~---I~~v~----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe 260 (783)
...++|||+|||+++++++|+++|++||. |..|+ ..++++|| |.+.++|++||+ +|+..|.||.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 45689999999999999999999999998 77776 33778887 999999999999 99999999999999
Q ss_pred ecCCCc
Q 003964 261 PSRPGG 266 (783)
Q Consensus 261 ~A~pr~ 266 (783)
++.++.
T Consensus 88 ~a~~~~ 93 (107)
T 2lmi_A 88 EINNED 93 (107)
T ss_dssp ECCHHH
T ss_pred ECCHHH
Confidence 997643
No 186
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=2.9e-11 Score=110.50 Aligned_cols=70 Identities=14% Similarity=0.227 Sum_probs=63.3
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEecCC
Q 003964 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPSRP 264 (783)
Q Consensus 193 psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A~p 264 (783)
..++|||+|||+++++++|+++|++| .|..|+ ..++++|| |.+.++|++|| .+|+..|.||.|+|..+.+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 35799999999999999999999999 888887 34778888 99999999999 6999999999999998864
No 187
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.16 E-value=9.2e-11 Score=104.58 Aligned_cols=79 Identities=24% Similarity=0.376 Sum_probs=74.5
Q ss_pred ceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccEEE
Q 003964 623 RTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVAS 702 (783)
Q Consensus 623 RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv~~ 702 (783)
-|||.|+|||..+|+++|++++.++ |...-+.++.|-.++.+.|||||.|.++++|.+.++.+||+.|. .+.+.
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~--G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~----gr~l~ 92 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSI--GEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQ----SKTIK 92 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEEC----CEEEE
Confidence 4899999999999999999999876 88999999999999999999999999999999999999999997 68899
Q ss_pred EEeee
Q 003964 703 LAYAR 707 (783)
Q Consensus 703 v~yAr 707 (783)
|.|||
T Consensus 93 V~~Ak 97 (99)
T 4fxv_A 93 VSYAR 97 (99)
T ss_dssp EEECC
T ss_pred EEEee
Confidence 99996
No 188
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.14 E-value=3.3e-11 Score=120.76 Aligned_cols=71 Identities=17% Similarity=0.188 Sum_probs=60.4
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCE--EEEe---cCCCcccc----ccCHHHHHHHHHHhCCCeeCCc----EeE
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDI--RTLY---TACKHRGF----FYDVRAAEAALRALNRSDINGK----RIK 258 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~I--~~v~---~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr----~Ik 258 (783)
.++++|||+|||+++++++|+++|++||.| ..|+ ..++++|| |.+.++|.+||..|||.+|.|+ ++.
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~ 200 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYT 200 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceE
Confidence 567899999999999999999999999998 7776 22344455 9999999999999999999987 566
Q ss_pred EEec
Q 003964 259 LEPS 262 (783)
Q Consensus 259 Ve~A 262 (783)
|++|
T Consensus 201 vk~~ 204 (205)
T 3tyt_A 201 LKLC 204 (205)
T ss_dssp CEEE
T ss_pred EEec
Confidence 7665
No 189
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.14 E-value=8.2e-11 Score=104.88 Aligned_cols=88 Identities=15% Similarity=0.209 Sum_probs=77.2
Q ss_pred CCCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCcc
Q 003964 620 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 699 (783)
Q Consensus 620 ~D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~K 699 (783)
...-.||+|||||...|.++|++++.++..-..--+.++.|..++.+.|||||.|.++++|.+.++.+||..+...-..|
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 35568999999999999999999998885545667999999999999999999999999999999999998765333468
Q ss_pred EEEEEeee
Q 003964 700 VASLAYAR 707 (783)
Q Consensus 700 v~~v~yAr 707 (783)
.+.|.||+
T Consensus 86 ~i~V~~Ak 93 (95)
T 2lkz_A 86 TIGVDFAK 93 (95)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcc
Confidence 89999997
No 190
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.13 E-value=5.6e-11 Score=122.05 Aligned_cols=142 Identities=18% Similarity=0.168 Sum_probs=97.9
Q ss_pred cCCCCCCCchhhhhccccCCCCCCCCCCCCcccccccc--CCCCcccccCCccccccccccccccCCCCCCCcccCCCCC
Q 003964 101 IGSLLPDDENDLLAGLVDDFDLRGLPSQLEDLEDDLFD--SGGGMELEFEPHESLSIGVSKLNISDGIAGTGIAHYPISN 178 (783)
Q Consensus 101 IGnLlpDddddllagv~d~~~~~~~~~~~dD~eDDiF~--sgGGmeLe~d~~esls~~~~~~s~~dg~~~nG~~~yg~~n 178 (783)
||||.++.+++.|..+|..+|.+..+ .+.. -.+.+++. ..+.+..+.. ..++....|..
T Consensus 27 V~nLp~~~te~~l~~~F~~~G~i~~v--------~i~~~kg~afV~f~--~~~~A~~A~~---~l~g~~i~g~~------ 87 (261)
T 3sde_A 27 VGNLPTDITEEDFKRLFERYGEPSEV--------FINRDRGFGFIRLE--SRTLAEIAKA---ELDGTILKSRP------ 87 (261)
T ss_dssp EESCCTTCCHHHHHHHTGGGCCCSEE--------EEETTTTEEEEECS--SHHHHHHHHH---HHTTCEETTEE------
T ss_pred EECCCCCCCHHHHHHHHHhcCCEEEE--------EEeCCCcEEEEEEC--CHHHHHHHHH---HcCCcEECCce------
Confidence 99999999999999999999876433 2211 12333443 2222222222 12222111110
Q ss_pred CCCCcCCCCCCCCCCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe----cCCCcccc----ccCHHHHHHHHHHhC-C
Q 003964 179 GVGTVAGEHPYGEHPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY----TACKHRGF----FYDVRAAEAALRALN-R 249 (783)
Q Consensus 179 ~~g~~~ge~~~~e~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~----~tgKsrGF----F~d~edAekAI~aLN-G 249 (783)
..... ..++++|||+|||..+++++|+++|++||.|..|. .+++++|| |.+.++|.+||+.|| +
T Consensus 88 ----l~v~~---a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~ 160 (261)
T 3sde_A 88 ----LRIRF---ATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDG 160 (261)
T ss_dssp ----CEEEE---CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHS
T ss_pred ----eEeee---cccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCC
Confidence 00000 12468999999999999999999999999999987 56778877 999999999999995 5
Q ss_pred CeeC---CcEeEEEecCCCccc
Q 003964 250 SDIN---GKRIKLEPSRPGGAR 268 (783)
Q Consensus 250 ~~I~---Gr~IkVe~A~pr~~r 268 (783)
..+. +++|.|+++.+...+
T Consensus 161 ~~~~~~~~r~i~v~~~~~~~~~ 182 (261)
T 3sde_A 161 AFLLTTTPRPVIVEPMEQFDDE 182 (261)
T ss_dssp CEESSSSCCBCEEEECCCEESS
T ss_pred eEEecCCCceEEEeeccccCcc
Confidence 5554 999999999876543
No 191
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.12 E-value=2.2e-11 Score=116.03 Aligned_cols=73 Identities=15% Similarity=0.237 Sum_probs=64.8
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEecC
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPSR 263 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A~ 263 (783)
...++|||+|||+++++++|+++|++|| |++|+ ..++++|| |.+.++|++|| .+|+..|.||.|+|..+.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 4568999999999999999999999999 66777 34778888 99999999999 799999999999999998
Q ss_pred CCc
Q 003964 264 PGG 266 (783)
Q Consensus 264 pr~ 266 (783)
++.
T Consensus 122 ~~~ 124 (139)
T 2hgn_A 122 TTG 124 (139)
T ss_dssp CSC
T ss_pred CCC
Confidence 765
No 192
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=1.4e-10 Score=105.25 Aligned_cols=74 Identities=19% Similarity=0.345 Sum_probs=62.3
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cC---CCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEE
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TA---CKHRGF----FYDVRAAEAALRALNRSDINGKRIKL 259 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~t---gKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkV 259 (783)
...++|||+|||+++++++|+++|++||+|. +. .+ ++++|| |.+.++|++||++|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3468999999999999999999999999998 55 22 577887 999999999999995 488999988
Q ss_pred EecCCCccc
Q 003964 260 EPSRPGGAR 268 (783)
Q Consensus 260 e~A~pr~~r 268 (783)
..+.+...+
T Consensus 83 ~~~~~~~~~ 91 (114)
T 2dnl_A 83 VSSPTIKDK 91 (114)
T ss_dssp ECCSSSCSE
T ss_pred ccCCCcCCC
Confidence 877654433
No 193
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.11 E-value=1.2e-10 Score=129.56 Aligned_cols=76 Identities=28% Similarity=0.507 Sum_probs=69.0
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEec
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPS 262 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A 262 (783)
.+.++|||+||+++||+++|+++|++||.|+.|. .+++++|| |.+.++|++||++|||..|.|+.|+|+++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 4568999999999999999999999999999987 36777777 99999999999999999999999999999
Q ss_pred CCCcc
Q 003964 263 RPGGA 267 (783)
Q Consensus 263 ~pr~~ 267 (783)
+++..
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 87653
No 194
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=4.2e-11 Score=111.82 Aligned_cols=73 Identities=19% Similarity=0.184 Sum_probs=63.7
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCE----EEEe----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEE
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDI----RTLY----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKL 259 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~I----~~v~----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkV 259 (783)
.+.++|||+|||+++|+++|+++|++||.| ..|+ .+++++|| |.+.++|++||+. |+..|.||.|+|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 346899999999999999999999999975 3443 57888988 9999999999995 999999999999
Q ss_pred EecCCC
Q 003964 260 EPSRPG 265 (783)
Q Consensus 260 e~A~pr 265 (783)
..+.++
T Consensus 100 ~~a~~~ 105 (123)
T 2dha_A 100 FRSTAA 105 (123)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 988654
No 195
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.08 E-value=9.4e-11 Score=121.39 Aligned_cols=76 Identities=24% Similarity=0.395 Sum_probs=65.2
Q ss_pred CCCCCEEEEecCCCCC---------CHHHHHHHhhcCCCEEEEe-cCCCcccc--ccCHHHHHHHHHHhCCCee------
Q 003964 191 EHPSRTLFVRNINSNV---------EDLELRSLFEQYGDIRTLY-TACKHRGF--FYDVRAAEAALRALNRSDI------ 252 (783)
Q Consensus 191 e~psrtLFVGNLp~dv---------TEeeLrelFsqfG~I~~v~-~tgKsrGF--F~d~edAekAI~aLNG~~I------ 252 (783)
....++||||||+.++ +|++|+++|++||+|++|+ ...|.+|| |.+.++|++|+++|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~ 210 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDK 210 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTST
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccc
Confidence 3457999999999998 7999999999999999998 33344555 9999999999999999999
Q ss_pred ------CCcEeEEEecCCCc
Q 003964 253 ------NGKRIKLEPSRPGG 266 (783)
Q Consensus 253 ------~Gr~IkVe~A~pr~ 266 (783)
.|+.|.|+||+...
T Consensus 211 e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 211 EWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TGGGGGGSCCCEEEECC---
T ss_pred cccccCCCCEEEEEEccCCC
Confidence 89999999998654
No 196
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.07 E-value=7.3e-11 Score=110.84 Aligned_cols=72 Identities=19% Similarity=0.188 Sum_probs=63.0
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHhhcCCCEE--EEe----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEe
Q 003964 192 HPSRTLFVRNINSNVEDLELRSLFEQYGDIR--TLY----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEP 261 (783)
Q Consensus 192 ~psrtLFVGNLp~dvTEeeLrelFsqfG~I~--~v~----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~ 261 (783)
...++|||+|||+++++++|+++|++| .|+ .|+ ..++++|| |.+.++|++||+ +++..|.||.|+|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 456899999999999999999999999 676 776 34788888 999999999998 578999999999998
Q ss_pred cCCC
Q 003964 262 SRPG 265 (783)
Q Consensus 262 A~pr 265 (783)
+.++
T Consensus 118 a~~~ 121 (126)
T 2hgm_A 118 SSQE 121 (126)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8653
No 197
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=7.6e-10 Score=100.17 Aligned_cols=76 Identities=20% Similarity=0.333 Sum_probs=65.0
Q ss_pred CCCCCEEEEecCCCCCC-----------HHHHHHHhhcCCCEEEEe-cCCCcccc----ccCHHHHHHHHHHhCCCeeCC
Q 003964 191 EHPSRTLFVRNINSNVE-----------DLELRSLFEQYGDIRTLY-TACKHRGF----FYDVRAAEAALRALNRSDING 254 (783)
Q Consensus 191 e~psrtLFVGNLp~dvT-----------EeeLrelFsqfG~I~~v~-~tgKsrGF----F~d~edAekAI~aLNG~~I~G 254 (783)
..++++|+|.||-...+ +++|+++|++||+|.+|. ....++|| |.+.++|++||+.|||..|.|
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 45689999999944432 589999999999999987 33446776 999999999999999999999
Q ss_pred cEeEEEecCCCc
Q 003964 255 KRIKLEPSRPGG 266 (783)
Q Consensus 255 r~IkVe~A~pr~ 266 (783)
|+|+|+++.++.
T Consensus 92 r~l~v~~a~~~~ 103 (112)
T 2dit_A 92 RQITAQAWDGTT 103 (112)
T ss_dssp EECEEEECCSCC
T ss_pred cEEEEEEeCCCC
Confidence 999999998865
No 198
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.04 E-value=4.9e-10 Score=101.56 Aligned_cols=73 Identities=21% Similarity=0.248 Sum_probs=63.5
Q ss_pred CCCCEEEEecCCC-----CCCHHHHHHHhhcCCCEEEEe--c----CCCcccc----ccCHHHHHHHHHHhCCCeeCCcE
Q 003964 192 HPSRTLFVRNINS-----NVEDLELRSLFEQYGDIRTLY--T----ACKHRGF----FYDVRAAEAALRALNRSDINGKR 256 (783)
Q Consensus 192 ~psrtLFVGNLp~-----dvTEeeLrelFsqfG~I~~v~--~----tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~ 256 (783)
.++++|+|.||.. +-++++|+++|++||+|.+|+ . +++++|| |.+.++|++|+++|||+.+.||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4689999999963 237899999999999999998 1 2567887 99999999999999999999999
Q ss_pred eEEEecCC
Q 003964 257 IKLEPSRP 264 (783)
Q Consensus 257 IkVe~A~p 264 (783)
|+|.++.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999975
No 199
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.04 E-value=6.9e-10 Score=94.22 Aligned_cols=82 Identities=17% Similarity=0.315 Sum_probs=76.2
Q ss_pred CCCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCcc
Q 003964 620 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 699 (783)
Q Consensus 620 ~D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~K 699 (783)
....+||.|+|||..+|+++|.+++..+ |...-+.++.|..++.+.|||||.|.++++|...++.+||+.+. .+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~ 77 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPF--GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF----GR 77 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGG--SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET----TE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhcc--CCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEEC----Cc
Confidence 3567999999999999999999999887 78889999999999999999999999999999999999999986 68
Q ss_pred EEEEEeee
Q 003964 700 VASLAYAR 707 (783)
Q Consensus 700 v~~v~yAr 707 (783)
.+.|.|||
T Consensus 78 ~l~v~~ak 85 (85)
T 3mdf_A 78 TIRVNLAK 85 (85)
T ss_dssp ECEEEECC
T ss_pred EEEEEEcC
Confidence 89999986
No 200
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=5.9e-10 Score=96.56 Aligned_cols=81 Identities=20% Similarity=0.226 Sum_probs=75.3
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
...+||.|+|||..+|+++|++++..+ |....+.++.|..++.+.|||||.|.++++|.+.++.+||+.+. .+.
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 87 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKY--GKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF----GRV 87 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTT--SCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET----TEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc--CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC----CcE
Confidence 456899999999999999999999776 78889999999999999999999999999999999999999887 789
Q ss_pred EEEEeee
Q 003964 701 ASLAYAR 707 (783)
Q Consensus 701 ~~v~yAr 707 (783)
+.|.|||
T Consensus 88 l~v~~ak 94 (94)
T 2e5h_A 88 IKASIAI 94 (94)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9999996
No 201
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.01 E-value=2.7e-10 Score=108.27 Aligned_cols=73 Identities=16% Similarity=0.287 Sum_probs=64.4
Q ss_pred CEEEEecC----CCCCCHHHHHHHhhcCCCEEEEe-----cCCCcccc----ccC----HHH----HHHHHH--HhCCCe
Q 003964 195 RTLFVRNI----NSNVEDLELRSLFEQYGDIRTLY-----TACKHRGF----FYD----VRA----AEAALR--ALNRSD 251 (783)
Q Consensus 195 rtLFVGNL----p~dvTEeeLrelFsqfG~I~~v~-----~tgKsrGF----F~d----~ed----AekAI~--aLNG~~ 251 (783)
++|||+|| ++.+++++|+++|++||+|.+|. .|++++|| |.+ .++ |.+||+ .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 99999999999999999999998 78999999 875 323 888988 789999
Q ss_pred eCCcEeEEEecCCCcc
Q 003964 252 INGKRIKLEPSRPGGA 267 (783)
Q Consensus 252 I~Gr~IkVe~A~pr~~ 267 (783)
|.|++|+|++.+....
T Consensus 83 I~Gr~irV~ln~~g~~ 98 (136)
T 2j8a_A 83 IMGFKFEVILNKHSIL 98 (136)
T ss_dssp ETTEEEEEEECCTTHH
T ss_pred ecCcEEEEEECcccHH
Confidence 9999999999877654
No 202
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.01 E-value=1.4e-09 Score=95.30 Aligned_cols=85 Identities=20% Similarity=0.368 Sum_probs=78.0
Q ss_pred CCCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCcc
Q 003964 620 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 699 (783)
Q Consensus 620 ~D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~K 699 (783)
....+||.|+|||..+|+++|++++..+ |...-+.++.|..++.+.|||||.|.++++|...++.+||+.+. .+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~ 78 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAY--GPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ----GR 78 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTT--SCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESS----SC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEEC----Cc
Confidence 4567999999999999999999999876 78889999999999999999999999999999999999999887 68
Q ss_pred EEEEEeeeccc
Q 003964 700 VASLAYARIQG 710 (783)
Q Consensus 700 v~~v~yAriQG 710 (783)
.+.|.||+-+.
T Consensus 79 ~l~V~~a~~~~ 89 (99)
T 1whw_A 79 MLHVLPSTIKK 89 (99)
T ss_dssp EEEEEECCCCS
T ss_pred EEEEEEcCCCc
Confidence 89999998654
No 203
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.99 E-value=1.8e-09 Score=92.00 Aligned_cols=82 Identities=12% Similarity=0.175 Sum_probs=74.2
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
+..+||.|+|||..+|.++|++++..+ |...-+.++.|..++.+.|||||.|.+.++|...++.++|+.+. .+.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 77 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPF--GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG----GRQ 77 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhc--CCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC----CeE
Confidence 567899999999999999999999877 78889999999889999999999999999999999999999887 688
Q ss_pred EEEEeeec
Q 003964 701 ASLAYARI 708 (783)
Q Consensus 701 ~~v~yAri 708 (783)
+.|.||+-
T Consensus 78 l~v~~a~~ 85 (87)
T 3bs9_A 78 IRTNWATR 85 (87)
T ss_dssp CEEEEEC-
T ss_pred EEEEecCC
Confidence 99999974
No 204
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=1.3e-09 Score=95.51 Aligned_cols=90 Identities=16% Similarity=0.196 Sum_probs=80.2
Q ss_pred CCCceeEEeecCCCccCHHHHHHHHhhhCCCccc-eEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCc
Q 003964 620 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYD-FLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSE 698 (783)
Q Consensus 620 ~D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YD-FlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~ 698 (783)
.+..+||.|+|||..+|+++|++++..+ |... -+.++.|..++.+.|||||.|.++++|...++.+||+.|..-...
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 83 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATM--GETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPA 83 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHT--TCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHh--CCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcc
Confidence 3567899999999999999999999887 7777 889999999999999999999999999999999999999865555
Q ss_pred cEEEEEeeecccH
Q 003964 699 KVASLAYARIQGQ 711 (783)
Q Consensus 699 Kv~~v~yAriQGk 711 (783)
+.+.|.||+-+++
T Consensus 84 ~~l~v~~a~~~~~ 96 (99)
T 2div_A 84 KRFKLNYATYSGP 96 (99)
T ss_dssp EECCEEETTCCSS
T ss_pred eeEEEeecCCCCC
Confidence 6689999987764
No 205
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=1.7e-09 Score=93.80 Aligned_cols=83 Identities=18% Similarity=0.218 Sum_probs=75.9
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
..-+||.|+|||..+|+++|++++..+ |...-+.++.|..++.+.|||||.|.++++|...++.+||+.|. .+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 76 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPF--GKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELA----GRP 76 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSS----SSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc--CCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeC----CcE
Confidence 456899999999999999999999876 78889999999999999999999999999999999999999887 688
Q ss_pred EEEEeeecc
Q 003964 701 ASLAYARIQ 709 (783)
Q Consensus 701 ~~v~yAriQ 709 (783)
+.|.||+-+
T Consensus 77 l~V~~a~~~ 85 (95)
T 2dnz_A 77 MRVGHVTER 85 (95)
T ss_dssp CEEEESSCC
T ss_pred EEEEEcccc
Confidence 999998744
No 206
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.97 E-value=2e-09 Score=97.12 Aligned_cols=84 Identities=17% Similarity=0.218 Sum_probs=76.9
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
+..+||.|+|||..+|.++|++++..+ |.+..+.++.|..++.+.|||||.|.+.++|.+.++.+||+.|. .+.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 96 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPF--GNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG----MKR 96 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGG--SCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET----TEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEEC----CEE
Confidence 455899999999999999999999877 78889999999999999999999999999999999999999987 688
Q ss_pred EEEEeeeccc
Q 003964 701 ASLAYARIQG 710 (783)
Q Consensus 701 ~~v~yAriQG 710 (783)
+.|.||+-+.
T Consensus 97 l~V~~a~~~~ 106 (115)
T 2cpz_A 97 LKVQLKRSKN 106 (115)
T ss_dssp CEEECCCCSC
T ss_pred EEEEEcCCCC
Confidence 9999998554
No 207
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=2.1e-09 Score=93.01 Aligned_cols=81 Identities=15% Similarity=0.159 Sum_probs=75.2
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
+..+||.|+|||..+|.++|++++..+ |....+.++.|..++.+.|||||.|.++++|...++.+||+.+. .+.
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 86 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKY--GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD----GRR 86 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTT--SCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEET----TEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc--CCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC----CEE
Confidence 456899999999999999999999876 78899999999999999999999999999999999999999887 688
Q ss_pred EEEEeee
Q 003964 701 ASLAYAR 707 (783)
Q Consensus 701 ~~v~yAr 707 (783)
+.|.||+
T Consensus 87 l~v~~a~ 93 (95)
T 2cqc_A 87 IRVSGPS 93 (95)
T ss_dssp EEEECCS
T ss_pred EEEEecC
Confidence 9999986
No 208
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.97 E-value=2.2e-09 Score=90.74 Aligned_cols=79 Identities=14% Similarity=0.245 Sum_probs=73.6
Q ss_pred eeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccEEEE
Q 003964 624 TTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASL 703 (783)
Q Consensus 624 TTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv~~v 703 (783)
+||.|+|||..+|+++|++++..+ |...-+.++.|..++.+.|||||.|.++++|...++.++|..+. .+.+.|
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~----g~~l~v 75 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDF--PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN----GRPLRI 75 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTS--TTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET----TEECEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeC----CcEEEE
Confidence 689999999999999999999776 78889999999999999999999999999999999999999986 688899
Q ss_pred Eeeec
Q 003964 704 AYARI 708 (783)
Q Consensus 704 ~yAri 708 (783)
.||+=
T Consensus 76 ~~a~~ 80 (83)
T 3md1_A 76 NWAAK 80 (83)
T ss_dssp EECCC
T ss_pred EecCc
Confidence 99874
No 209
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.96 E-value=1.1e-09 Score=108.87 Aligned_cols=73 Identities=8% Similarity=0.168 Sum_probs=64.3
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEecCC
Q 003964 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPSRP 264 (783)
Q Consensus 193 psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A~p 264 (783)
..++|||+|||+++++++|+++|++||+|..|+ .+++++|| |.+.++|++|++.++ ..+.|++|+|.+++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 358999999999999999999999999999997 34778888 999999999998654 699999999999876
Q ss_pred Cc
Q 003964 265 GG 266 (783)
Q Consensus 265 r~ 266 (783)
-.
T Consensus 187 y~ 188 (193)
T 2voo_A 187 YF 188 (193)
T ss_dssp C-
T ss_pred HH
Confidence 43
No 210
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=2.2e-09 Score=94.42 Aligned_cols=83 Identities=13% Similarity=0.177 Sum_probs=76.3
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
+..+||.|+|||..+|+++|++++..+ |....+.++.|..++.+.|||||.|.++++|...++.+||+.+. .+.
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 83 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKY--GQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVD----GRQ 83 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHH--SCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTT----SCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc--CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC----CeE
Confidence 566899999999999999999999888 78899999999999999999999999999999999999999886 577
Q ss_pred EEEEeeecc
Q 003964 701 ASLAYARIQ 709 (783)
Q Consensus 701 ~~v~yAriQ 709 (783)
+.|.||+-+
T Consensus 84 l~v~~a~~~ 92 (102)
T 1x5s_A 84 IRVDQAGKS 92 (102)
T ss_dssp CEEEEEECC
T ss_pred EEEEECCCC
Confidence 899999744
No 211
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=1.8e-09 Score=94.97 Aligned_cols=84 Identities=17% Similarity=0.290 Sum_probs=77.3
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
+..+||.|+|||..+|+++|.+++..+ |....+.++.|..++.+.|||||.|.++++|...++.++|+.+. .+.
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 83 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPF--GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF----GRT 83 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTT--SCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEET----TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcc--CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CcE
Confidence 567999999999999999999999876 78888999999999999999999999999999999999999987 789
Q ss_pred EEEEeeeccc
Q 003964 701 ASLAYARIQG 710 (783)
Q Consensus 701 ~~v~yAriQG 710 (783)
+.|.||+-+-
T Consensus 84 l~V~~a~~~~ 93 (102)
T 2cqb_A 84 IRVNLAKPMR 93 (102)
T ss_dssp EEEEECCCCC
T ss_pred EEEEeCCCCC
Confidence 9999998543
No 212
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.94 E-value=2.2e-09 Score=93.79 Aligned_cols=85 Identities=14% Similarity=0.221 Sum_probs=76.3
Q ss_pred CCCCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccc---cccceeEEEEeccChhHHHHHHHHHcCccccCC
Q 003964 619 GEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFK---NKCNVGYAFINMVSPSHIISFYEAFNGKKWEKF 695 (783)
Q Consensus 619 g~D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~---~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~ 695 (783)
|....+||.|+|||..+|.++|++++..+ |...-+.++.|.. ++.+.|||||.|.++++|...++.++|+.+.
T Consensus 1 Gs~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-- 76 (98)
T 2cpf_A 1 GSSGSSGLFIKNLNFSTTEETLKGVFSKV--GAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD-- 76 (98)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEET--
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeC--
Confidence 45677999999999999999999999876 7888899999887 6789999999999999999999999999887
Q ss_pred CCccEEEEEeeecc
Q 003964 696 NSEKVASLAYARIQ 709 (783)
Q Consensus 696 ~s~Kv~~v~yAriQ 709 (783)
.+.+.|.||+-.
T Consensus 77 --g~~l~V~~a~~~ 88 (98)
T 2cpf_A 77 --GHKLEVRISERA 88 (98)
T ss_dssp --TEECEEECSSCS
T ss_pred --CeEEEEEEccCC
Confidence 678999998744
No 213
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=3.9e-09 Score=93.53 Aligned_cols=83 Identities=16% Similarity=0.250 Sum_probs=76.7
Q ss_pred CceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccEE
Q 003964 622 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 701 (783)
Q Consensus 622 ~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv~ 701 (783)
..+||.|+|||..+|.++|++++..+ |...-+.++.|..++.+.|||||.|.+.++|...++.++|+.+. .+.+
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 95 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEY--GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM----GQPI 95 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSS----SSBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcc--CCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEEC----CcEE
Confidence 45899999999999999999999887 88999999999999999999999999999999999999999887 6788
Q ss_pred EEEeeeccc
Q 003964 702 SLAYARIQG 710 (783)
Q Consensus 702 ~v~yAriQG 710 (783)
.|.||+-++
T Consensus 96 ~V~~a~~~~ 104 (106)
T 1p27_B 96 SVDWCFVRG 104 (106)
T ss_dssp EEEESEESS
T ss_pred EEEeecCCC
Confidence 999998664
No 214
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=2e-09 Score=93.52 Aligned_cols=85 Identities=22% Similarity=0.249 Sum_probs=76.2
Q ss_pred CCCceeEEeecCCCccCHHHHHHHHhhhCCCccceE-EeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCc
Q 003964 620 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFL-YLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSE 698 (783)
Q Consensus 620 ~D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFl-YLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~ 698 (783)
....+||.|+|||..+|.++|++++..+ |...-+ .++.|..++.+.|||||.|.++++|...++.++|+.+. .
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g 75 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAF--GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC----N 75 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTT--SCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEET----T
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC----C
Confidence 3456899999999999999999999886 677777 99999899999999999999999999999999999986 6
Q ss_pred cEEEEEeeeccc
Q 003964 699 KVASLAYARIQG 710 (783)
Q Consensus 699 Kv~~v~yAriQG 710 (783)
+.+.|.||+-+.
T Consensus 76 ~~l~v~~a~~~~ 87 (96)
T 1x5t_A 76 RPITVSYAFKKD 87 (96)
T ss_dssp EECEEEESCCCC
T ss_pred EEEEEEEecccC
Confidence 889999997543
No 215
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.93 E-value=3.4e-09 Score=95.36 Aligned_cols=83 Identities=12% Similarity=0.170 Sum_probs=76.3
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
...+||.|+|||..+|.++|++++..+ |.+..+.++.|..++.+.|||||.|.+.++|...++.++|+.+. .+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 86 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPF--GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG----GRQ 86 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEET----TEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CEE
Confidence 456899999999999999999999877 78889999999999999999999999999999999999999887 588
Q ss_pred EEEEeeecc
Q 003964 701 ASLAYARIQ 709 (783)
Q Consensus 701 ~~v~yAriQ 709 (783)
+.|.||+-+
T Consensus 87 l~V~~a~~~ 95 (115)
T 2dgo_A 87 IRTNWATRK 95 (115)
T ss_dssp CEEEESSCC
T ss_pred EEEEEccCC
Confidence 999999754
No 216
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.93 E-value=2.2e-09 Score=94.84 Aligned_cols=84 Identities=19% Similarity=0.307 Sum_probs=76.8
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
+..+||.|+|||..+|+++|++++..+ |.+.-+.++.|..++.+.|||||.|.++++|...++.+||+.+. .+.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 84 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKY--GRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELD----GRE 84 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBT----TBC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEEC----CcE
Confidence 456899999999999999999999876 78899999999999999999999999999999999999999887 678
Q ss_pred EEEEeeeccc
Q 003964 701 ASLAYARIQG 710 (783)
Q Consensus 701 ~~v~yAriQG 710 (783)
+.|.||+-+.
T Consensus 85 l~V~~a~~~~ 94 (103)
T 2dnm_A 85 LRVQVARYGR 94 (103)
T ss_dssp CEEEECSSCC
T ss_pred EEEEECCcCC
Confidence 8999998554
No 217
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.91 E-value=4.4e-09 Score=91.24 Aligned_cols=81 Identities=12% Similarity=0.205 Sum_probs=73.7
Q ss_pred CCCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCcc
Q 003964 620 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 699 (783)
Q Consensus 620 ~D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~K 699 (783)
.+..+||.|+|||..+|+++|++++..+ |....+.++.|.. +.+.|||||.|.++++|.+.++.++|+.+. .+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~--G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~ 85 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQA--GPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLY----GR 85 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGG--SCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEET----TE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc--CCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEEC----CC
Confidence 3556899999999999999999999887 7888999999975 888999999999999999999999999887 68
Q ss_pred EEEEEeee
Q 003964 700 VASLAYAR 707 (783)
Q Consensus 700 v~~v~yAr 707 (783)
.+.|.||+
T Consensus 86 ~l~V~~a~ 93 (95)
T 2ywk_A 86 PINVSGPS 93 (95)
T ss_dssp ECEEECCC
T ss_pred EEEEEEcC
Confidence 88999986
No 218
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=3.6e-09 Score=95.07 Aligned_cols=84 Identities=19% Similarity=0.163 Sum_probs=75.1
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCC----
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFN---- 696 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~---- 696 (783)
...+||.|+|||..+|.++|++++..+ |.+..+.++.|. ++.+.|||||.|.+.++|...++.+||+.|....
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPF--GQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTT--SCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 345899999999999999999999776 788899999998 8899999999999999999999999999987544
Q ss_pred CccEEEEEeee
Q 003964 697 SEKVASLAYAR 707 (783)
Q Consensus 697 s~Kv~~v~yAr 707 (783)
..+.+.|.||+
T Consensus 100 ~~~~l~v~~a~ 110 (114)
T 1x5o_A 100 PTEPLLCKFSG 110 (114)
T ss_dssp CSSCBEEEECC
T ss_pred CCCceeEEccC
Confidence 56889999987
No 219
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.90 E-value=2.2e-09 Score=97.11 Aligned_cols=81 Identities=17% Similarity=0.213 Sum_probs=73.8
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
...+||.|+|||..+|+++|++++.++ |....+.++.|-.++.+.|||||.|.+.+++.+.++.+||+.+. .+.
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 111 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPF--GNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVG----TKR 111 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTS--CEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEET----TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEEC----CEE
Confidence 445899999999999999999999875 88889999999889999999999999999999999999999887 688
Q ss_pred EEEEeee
Q 003964 701 ASLAYAR 707 (783)
Q Consensus 701 ~~v~yAr 707 (783)
+.|.|||
T Consensus 112 l~V~~ak 118 (118)
T 2khc_A 112 LKVQLKK 118 (118)
T ss_dssp CCEEEC-
T ss_pred EEEEecC
Confidence 8999986
No 220
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.90 E-value=4.1e-09 Score=92.09 Aligned_cols=83 Identities=19% Similarity=0.241 Sum_probs=76.6
Q ss_pred eeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccEEEE
Q 003964 624 TTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASL 703 (783)
Q Consensus 624 TTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv~~v 703 (783)
+||.|+|||..+|+++|++++..+ |...-+.++.|..++.+.|||||.|.+.++|...++.++|+.+. .+.+.|
T Consensus 3 ~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V 76 (96)
T 2x1f_A 3 RVVYLGSIPYDQTEEQILDLCSNV--GPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLG----SRFLKC 76 (96)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEET----TEECEE
T ss_pred cEEEEECCCCCCCHHHHHHHHHhc--CCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeEC----CeEEEE
Confidence 799999999999999999999877 78999999999999999999999999999999999999999887 589999
Q ss_pred EeeecccHH
Q 003964 704 AYARIQGQA 712 (783)
Q Consensus 704 ~yAriQGk~ 712 (783)
.||+=+...
T Consensus 77 ~~a~~~~~~ 85 (96)
T 2x1f_A 77 GYSSNSDIS 85 (96)
T ss_dssp EECSCSSGG
T ss_pred EEcCCCCCC
Confidence 999866544
No 221
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.90 E-value=4.6e-09 Score=94.70 Aligned_cols=89 Identities=17% Similarity=0.239 Sum_probs=79.0
Q ss_pred hhhcCCCCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccC
Q 003964 615 KIISGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEK 694 (783)
Q Consensus 615 ~I~~g~D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~ 694 (783)
.+..+....+||.|+|||..+|.++|++++..+ |....+.++.|..++.+.|||||.|.++++|...++.++|..+.
T Consensus 18 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~- 94 (108)
T 2jrs_A 18 NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPF--GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA- 94 (108)
T ss_dssp SSCCSCSSCEEEEEECCCSSCCHHHHHHHHTTT--SCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSS-
T ss_pred ccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC-
Confidence 344556778999999999999999999999776 78889999999999999999999999999999999999999876
Q ss_pred CCCccEEEEEeeecc
Q 003964 695 FNSEKVASLAYARIQ 709 (783)
Q Consensus 695 ~~s~Kv~~v~yAriQ 709 (783)
.+.+.|.||+-+
T Consensus 95 ---g~~l~V~~a~~k 106 (108)
T 2jrs_A 95 ---GRPMKVGHVTER 106 (108)
T ss_dssp ---SSCCEEECSCSS
T ss_pred ---CEEEEEEEcccC
Confidence 578899998743
No 222
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.90 E-value=6.7e-09 Score=92.13 Aligned_cols=82 Identities=15% Similarity=0.201 Sum_probs=75.0
Q ss_pred CCCCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCc
Q 003964 619 GEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSE 698 (783)
Q Consensus 619 g~D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~ 698 (783)
+.+..+||.|+|||..+|.++|++++..+ |....+.++.|. ++.+.|||||.|.++++|...++.++|+.+. .
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g 97 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEF--GTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLD----G 97 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEET----T
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeC----C
Confidence 34667999999999999999999999876 788899999998 8899999999999999999999999999986 6
Q ss_pred cEEEEEeee
Q 003964 699 KVASLAYAR 707 (783)
Q Consensus 699 Kv~~v~yAr 707 (783)
+.+.|.||.
T Consensus 98 ~~l~V~~a~ 106 (107)
T 3ulh_A 98 RPMNIQLVT 106 (107)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEeC
Confidence 889999985
No 223
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.89 E-value=7.4e-09 Score=96.20 Aligned_cols=84 Identities=21% Similarity=0.262 Sum_probs=77.1
Q ss_pred CCCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCcc
Q 003964 620 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 699 (783)
Q Consensus 620 ~D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~K 699 (783)
.+..+||.|+|||..+|.++|++++..+ |.+.-+.++.|..++.+.|||||.|.+.++|.+.++.+||..+. .+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~ 112 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERY--GPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL----NK 112 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHH--SCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECS----SC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----Ce
Confidence 4667899999999999999999999888 78889999999999999999999999999999999999999887 68
Q ss_pred EEEEEeeecc
Q 003964 700 VASLAYARIQ 709 (783)
Q Consensus 700 v~~v~yAriQ 709 (783)
.+.|.||+-.
T Consensus 113 ~l~v~~a~~~ 122 (139)
T 1u6f_A 113 RLKVALAASG 122 (139)
T ss_dssp EEEEEESSCC
T ss_pred EEEEEECCCC
Confidence 8999998743
No 224
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=3e-09 Score=93.97 Aligned_cols=84 Identities=17% Similarity=0.275 Sum_probs=76.5
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
+..+||.|+|||..+|.++|++++..+ |....+.++.|..++.+.|||||.|.+.++|...++.++|+.+. .+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 86 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPF--GSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYD----HLI 86 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTT--CCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEET----TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC--CCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeC----CcE
Confidence 556999999999999999999998776 78889999999999999999999999999999999999999887 688
Q ss_pred EEEEeeeccc
Q 003964 701 ASLAYARIQG 710 (783)
Q Consensus 701 ~~v~yAriQG 710 (783)
+.|.||+-+.
T Consensus 87 l~v~~a~~~~ 96 (103)
T 2cq0_A 87 LNVEWAKPST 96 (103)
T ss_dssp CEEEESSCCC
T ss_pred EEEEECCCCC
Confidence 9999997553
No 225
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=5.8e-09 Score=91.91 Aligned_cols=88 Identities=18% Similarity=0.254 Sum_probs=79.1
Q ss_pred CceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccEE
Q 003964 622 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 701 (783)
Q Consensus 622 ~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv~ 701 (783)
..+||.|+|||..+|+++|++++..+ |....+.++.|..++.+.|||||.|.+.++|...++.++|+.|. .+.+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~--G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 80 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEV--GPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFS----GRAL 80 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTT--SCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCS----SSCB
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhc--CCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC----CcEE
Confidence 45899999999999999999999876 78889999999999999999999999999999999999999886 6788
Q ss_pred EEEeeecccHHHHH
Q 003964 702 SLAYARIQGQAALV 715 (783)
Q Consensus 702 ~v~yAriQGk~ali 715 (783)
.|.||+-+......
T Consensus 81 ~v~~a~~~~~~~~~ 94 (104)
T 1p1t_A 81 RVDNAASEKNKEEL 94 (104)
T ss_dssp EEEETTCTTHHHHH
T ss_pred EEEeCCCccchhhh
Confidence 99999977665433
No 226
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=6.9e-09 Score=91.11 Aligned_cols=82 Identities=18% Similarity=0.194 Sum_probs=74.2
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
...+||.|+|||..+|.++|++++..+ |...-+.++.|. ++.+.|||||.|.++++|...++.++|+.+. .+.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 87 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAH--GTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIK----ENI 87 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESS----SCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC--CCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEEC----CEE
Confidence 445899999999999999999999876 788889999998 8889999999999999999999999999887 688
Q ss_pred EEEEeeecc
Q 003964 701 ASLAYARIQ 709 (783)
Q Consensus 701 ~~v~yAriQ 709 (783)
+.|.||+-+
T Consensus 88 l~v~~a~~~ 96 (100)
T 2do4_A 88 IKVAISNSG 96 (100)
T ss_dssp EEEEECCCC
T ss_pred EEEEECCCC
Confidence 999999754
No 227
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.88 E-value=2.6e-09 Score=93.34 Aligned_cols=83 Identities=12% Similarity=0.062 Sum_probs=73.2
Q ss_pred CCCCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCc
Q 003964 619 GEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSE 698 (783)
Q Consensus 619 g~D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~ 698 (783)
+.+..+||.|+|||..+|+++|++++..+ |....+.++.|..++.+.|||||.|.++++|.+.++.+||+.|. .
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~--G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----g 84 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGY--QVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG----S 84 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTS--CCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEET----T
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHc--CCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeC----C
Confidence 34667999999999999999999999776 56655667788888899999999999999999999999999887 6
Q ss_pred cEEEEEeee
Q 003964 699 KVASLAYAR 707 (783)
Q Consensus 699 Kv~~v~yAr 707 (783)
+.+.|.||+
T Consensus 85 ~~l~V~~a~ 93 (98)
T 2cqp_A 85 RKVKLVLGS 93 (98)
T ss_dssp EECEEEESS
T ss_pred eEEEEEEcC
Confidence 888999986
No 228
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.88 E-value=4.2e-09 Score=92.98 Aligned_cols=82 Identities=20% Similarity=0.239 Sum_probs=73.9
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
+..+||.|+|||..+|.++|++++..+ |...-+.++.| ++.+.|||||.|.++++|...++.+||+.+. .+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 84 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPF--GTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVA----TKP 84 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTT--SCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSS----SSB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeC----CcE
Confidence 456899999999999999999999875 78888999998 8899999999999999999999999999886 688
Q ss_pred EEEEeeeccc
Q 003964 701 ASLAYARIQG 710 (783)
Q Consensus 701 ~~v~yAriQG 710 (783)
+.|.||+-+.
T Consensus 85 l~V~~a~~~~ 94 (103)
T 2d9p_A 85 LYVALAQRKE 94 (103)
T ss_dssp CEEEECSSCC
T ss_pred EEEEEecccc
Confidence 9999998543
No 229
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.88 E-value=6.9e-09 Score=92.66 Aligned_cols=85 Identities=15% Similarity=0.257 Sum_probs=77.8
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
...+||.|+|||..+|+++|++++..+ |...-+.++.|..++.+.|||||.|.+.++|...++.++|+.+. .+.
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~ 97 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDY--GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM----GQT 97 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGG--SCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEET----TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC----CcE
Confidence 345899999999999999999999887 78899999999999999999999999999999999999999886 688
Q ss_pred EEEEeeecccH
Q 003964 701 ASLAYARIQGQ 711 (783)
Q Consensus 701 ~~v~yAriQGk 711 (783)
+.|.||+-++.
T Consensus 98 l~V~~a~~~~~ 108 (110)
T 1oo0_B 98 IQVDWCFVKGP 108 (110)
T ss_dssp CEEEESEESSC
T ss_pred EEEEEcccCCC
Confidence 99999987653
No 230
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.87 E-value=6.1e-09 Score=92.23 Aligned_cols=87 Identities=18% Similarity=0.140 Sum_probs=76.4
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
...+||.|+|||..+|+++|++++..+ |...-+.++.|..++.+.|||||.|.++++|...++.++|+.+-.. ..+.
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~-~g~~ 87 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEF--GKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPG-MNRP 87 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHH--SCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTT-CSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCC-CCce
Confidence 456899999999999999999999988 7888999999999999999999999999999999999999876211 2577
Q ss_pred EEEEeeeccc
Q 003964 701 ASLAYARIQG 710 (783)
Q Consensus 701 ~~v~yAriQG 710 (783)
+.|.||+-+.
T Consensus 88 l~v~~a~~~~ 97 (106)
T 2dgp_A 88 IQVKPADSES 97 (106)
T ss_dssp CEEEECCCCS
T ss_pred EEEEECCccc
Confidence 8999997543
No 231
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=5.1e-09 Score=92.60 Aligned_cols=84 Identities=15% Similarity=0.168 Sum_probs=76.8
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
+..+||.|+|||..+|.++|++++..+ |....+.++.|..++.+.|||||.|.++++|...++.++|+.+. .+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 86 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQA--GPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLY----GKP 86 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTT--SCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCS----SCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeEC----CeE
Confidence 456899999999999999999999887 78899999999999999999999999999999999999999887 678
Q ss_pred EEEEeeeccc
Q 003964 701 ASLAYARIQG 710 (783)
Q Consensus 701 ~~v~yAriQG 710 (783)
+.|.||+-+.
T Consensus 87 l~v~~a~~~~ 96 (105)
T 1x5u_A 87 IRVNKASAHN 96 (105)
T ss_dssp CEEEETTTTS
T ss_pred EEEEECCCCC
Confidence 8999987543
No 232
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.87 E-value=5.6e-09 Score=95.45 Aligned_cols=84 Identities=15% Similarity=0.247 Sum_probs=76.8
Q ss_pred CceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccEE
Q 003964 622 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 701 (783)
Q Consensus 622 ~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv~ 701 (783)
..+||.|+|||..+|+++|++++..+ |...-+.++.|..++.+.|||||.|.++++|...++.+||+.|. .+.+
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 94 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEY--GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM----GQPI 94 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSS----SSBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC----CeEE
Confidence 45899999999999999999999876 78899999999999999999999999999999999999999886 6789
Q ss_pred EEEeeecccH
Q 003964 702 SLAYARIQGQ 711 (783)
Q Consensus 702 ~v~yAriQGk 711 (783)
.|.||+-++.
T Consensus 95 ~v~~a~~~~~ 104 (126)
T 3ex7_B 95 SVDWCFVRGP 104 (126)
T ss_dssp EEEESEESSS
T ss_pred EEEEecCCCC
Confidence 9999986653
No 233
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.86 E-value=8.5e-09 Score=90.56 Aligned_cols=82 Identities=15% Similarity=0.227 Sum_probs=73.4
Q ss_pred CCCceeEEeecCCCccCHHHHHHHHhhhCCCccce--------EEeccccccccceeEEEEeccChhHHHHHHHHHcCcc
Q 003964 620 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDF--------LYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKK 691 (783)
Q Consensus 620 ~D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDF--------lYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~ 691 (783)
....+||.|+|||..+|+++|++++..+ |.... +.++.|-.++.+.|||||.|.+.++|...++.++|+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQI--GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTT--SCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHh--CCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 3456999999999999999999999876 56666 8999998899999999999999999999999999998
Q ss_pred ccCCCCccEEEEEeee
Q 003964 692 WEKFNSEKVASLAYAR 707 (783)
Q Consensus 692 w~~~~s~Kv~~v~yAr 707 (783)
+. .+.+.|.||+
T Consensus 88 ~~----g~~l~V~~A~ 99 (99)
T 2la6_A 88 FS----GNPIKVSFAT 99 (99)
T ss_dssp SS----SSBCEEEECC
T ss_pred eC----CcEEEEEecC
Confidence 87 5778999985
No 234
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.86 E-value=3.3e-09 Score=91.89 Aligned_cols=83 Identities=13% Similarity=0.071 Sum_probs=69.1
Q ss_pred ceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccEEE
Q 003964 623 RTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVAS 702 (783)
Q Consensus 623 RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv~~ 702 (783)
|.||.|+|||...|+++|.+++..+......-+.++.|-.++.+.|||||.|.+.++|.+.++.+||+.|. .+.+.
T Consensus 1 r~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~----gr~i~ 76 (90)
T 3p5t_L 1 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH----GQNPV 76 (90)
T ss_dssp ---CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSS----SCCCE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeC----CEEEE
Confidence 67999999999999999999998773227888999999999999999999999999999999999999887 67788
Q ss_pred EEeeecc
Q 003964 703 LAYARIQ 709 (783)
Q Consensus 703 v~yAriQ 709 (783)
|.||+-+
T Consensus 77 V~~~~~~ 83 (90)
T 3p5t_L 77 VTPSNKL 83 (90)
T ss_dssp ECCC---
T ss_pred EEECCCC
Confidence 8888743
No 235
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.86 E-value=2.8e-09 Score=93.28 Aligned_cols=80 Identities=15% Similarity=0.223 Sum_probs=70.2
Q ss_pred eeEEeecCCCccCHHHHHHHHhhhCCC-ccceEEeccccccccceeEEEEeccChhHHHHHHHHHc-CccccCCCCccEE
Q 003964 624 TTLMIKNIPNKYTSKMLLAAIDENHRG-TYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFN-GKKWEKFNSEKVA 701 (783)
Q Consensus 624 TTvMIRNIPNk~tq~~L~~~ide~~~g-~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fn-g~~w~~~~s~Kv~ 701 (783)
+||+|||||..+|+++|++++.++ | ...-+.|+.|..++.+.|||||.|.++++|.+.++..+ +..+. .+.+
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~--G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~----gr~i 75 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSH--GVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNIL----GQKV 75 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHH--TCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEET----TEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHh--CCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEEC----CEEE
Confidence 589999999999999999999887 5 67778899999999999999999999999999998864 44555 5889
Q ss_pred EEEeeecc
Q 003964 702 SLAYARIQ 709 (783)
Q Consensus 702 ~v~yAriQ 709 (783)
.|.||+=+
T Consensus 76 ~V~~a~~~ 83 (91)
T 2lxi_A 76 SMHYSDPK 83 (91)
T ss_dssp EEECCCSC
T ss_pred EEEEcCCC
Confidence 99999743
No 236
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.86 E-value=6.5e-09 Score=88.56 Aligned_cols=81 Identities=12% Similarity=0.282 Sum_probs=73.4
Q ss_pred ceeEEeecCCCccCHHHHHHHHhhhCCCccceEEecccccccc-ceeEEEEeccChhHHHHHHHHHcCccccCCCCccEE
Q 003964 623 RTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKC-NVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 701 (783)
Q Consensus 623 RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~-N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv~ 701 (783)
-|||.|+|||..+|+++|.+++..+ |...-+.++.|..+.. +.|||||.|.++++|...++.+||..+. .+.+
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 77 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTY--GKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID----GQEI 77 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTT--SCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEET----TEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeEC----CeEE
Confidence 4899999999999999999999876 7888899999988766 8999999999999999999999999987 6788
Q ss_pred EEEeeecc
Q 003964 702 SLAYARIQ 709 (783)
Q Consensus 702 ~v~yAriQ 709 (783)
.|.||+-+
T Consensus 78 ~v~~a~~~ 85 (88)
T 4a8x_A 78 TATAVLAP 85 (88)
T ss_dssp EEEEECCC
T ss_pred EEEECCCC
Confidence 99998643
No 237
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.85 E-value=3.9e-09 Score=114.52 Aligned_cols=73 Identities=21% Similarity=0.334 Sum_probs=62.0
Q ss_pred CCCCCEEEEec--CCCCCCHHHHHHHhhcCCCEEEEe-cCCCcccc--ccCHHHHHHHHHHhCCCeeC---Cc--EeEEE
Q 003964 191 EHPSRTLFVRN--INSNVEDLELRSLFEQYGDIRTLY-TACKHRGF--FYDVRAAEAALRALNRSDIN---GK--RIKLE 260 (783)
Q Consensus 191 e~psrtLFVGN--Lp~dvTEeeLrelFsqfG~I~~v~-~tgKsrGF--F~d~edAekAI~aLNG~~I~---Gr--~IkVe 260 (783)
..|+++||||| |++.+||++|+++|++||+|++|. ..+|..|| |.+.++|++||++|||+++. |+ .|.|.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~ 94 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 94 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEE
Confidence 46789999999 578999999999999999999998 34555555 99999999999999999983 45 57888
Q ss_pred ecC
Q 003964 261 PSR 263 (783)
Q Consensus 261 ~A~ 263 (783)
++.
T Consensus 95 ~~~ 97 (345)
T 3tht_A 95 FVE 97 (345)
T ss_dssp ECS
T ss_pred Eee
Confidence 874
No 238
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.85 E-value=6.6e-09 Score=93.21 Aligned_cols=84 Identities=15% Similarity=0.233 Sum_probs=75.5
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccc--------eEEeccccccccceeEEEEeccChhHHHHHHHHHcCccc
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYD--------FLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKW 692 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YD--------FlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w 692 (783)
+..+||.|+|||..+|.++|++++..+ |... .+.++.|..++.+.|||||.|.++++|...++.+||+.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQC--GVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTT--SCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhc--CCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 456899999999999999999999887 5555 589999999999999999999999999999999999998
Q ss_pred cCCCCccEEEEEeeeccc
Q 003964 693 EKFNSEKVASLAYARIQG 710 (783)
Q Consensus 693 ~~~~s~Kv~~v~yAriQG 710 (783)
. .+.+.|.||+-+.
T Consensus 91 ~----g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 91 Q----GSKLKVSLARKKP 104 (113)
T ss_dssp T----TEECEEECSSCCC
T ss_pred C----CCEEEEEECCCCC
Confidence 7 6889999998554
No 239
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.85 E-value=7.6e-09 Score=91.59 Aligned_cols=83 Identities=14% Similarity=0.324 Sum_probs=75.4
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccc-cccccceeEEEEeccChhHHHHHHHHH-cCccccCCCCc
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPID-FKNKCNVGYAFINMVSPSHIISFYEAF-NGKKWEKFNSE 698 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiD-f~~~~N~GYAFINf~~~~~~~~f~~~f-ng~~w~~~~s~ 698 (783)
...+||.|+|||..+|.++|++++..+ |...-+.++.| -.++.+.|||||.|.+.++|...++.+ ||+.+. .
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~----g 86 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTF--GELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY----G 86 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS----S
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHcc--CCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC----C
Confidence 456899999999999999999999886 78889999999 788899999999999999999999999 899887 5
Q ss_pred cEEEEEeeecc
Q 003964 699 KVASLAYARIQ 709 (783)
Q Consensus 699 Kv~~v~yAriQ 709 (783)
+.+.|.||+-+
T Consensus 87 ~~l~v~~a~~~ 97 (107)
T 2cph_A 87 RRLVLEWADSE 97 (107)
T ss_dssp CBCEEEECCCC
T ss_pred CEEEEEeCCCC
Confidence 78899999754
No 240
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.85 E-value=8.4e-09 Score=97.92 Aligned_cols=82 Identities=15% Similarity=0.275 Sum_probs=76.1
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
+..+||.|+|||..+|.++|++++..+ |.+.-+.++.|..++.+.|||||.|.++++|...++.++|+.|. .+.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~ 110 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKS--GDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLD----DRI 110 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEET----TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC----CeE
Confidence 456899999999999999999999877 77889999999999999999999999999999999999999986 688
Q ss_pred EEEEeeec
Q 003964 701 ASLAYARI 708 (783)
Q Consensus 701 ~~v~yAri 708 (783)
+.|.||+-
T Consensus 111 l~V~~a~~ 118 (156)
T 1h2v_Z 111 IRTDWDAG 118 (156)
T ss_dssp CEEEEESC
T ss_pred EEEEECCC
Confidence 99999973
No 241
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.85 E-value=6.9e-09 Score=89.44 Aligned_cols=83 Identities=20% Similarity=0.323 Sum_probs=72.4
Q ss_pred CCCCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCc
Q 003964 619 GEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSE 698 (783)
Q Consensus 619 g~D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~ 698 (783)
+.+..+||.|+|||..+|+++|++++..+ |....+.++.| ++.+.|||||.|.+.++|...++.++|+.+. .
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~----g 75 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNEC--GHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLS----G 75 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTT--SCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBT----T
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEEC----C
Confidence 34667999999999999999999999886 77777777764 7888999999999999999999999999887 5
Q ss_pred cEEEEEeeecc
Q 003964 699 KVASLAYARIQ 709 (783)
Q Consensus 699 Kv~~v~yAriQ 709 (783)
+.+.|.||+-+
T Consensus 76 ~~l~v~~a~~~ 86 (92)
T 2dgv_A 76 REIDVRIDRNA 86 (92)
T ss_dssp BCCCCEECSCC
T ss_pred cEEEEEEcCCC
Confidence 67889998754
No 242
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.85 E-value=5.6e-09 Score=91.85 Aligned_cols=81 Identities=19% Similarity=0.281 Sum_probs=71.5
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
+..+||.|+|||..+|.++|++++. .|--+.++.|..++.+.|||||.|.++++|...++.++|+.+. .+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~-----~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 83 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFD-----GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID----GNK 83 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTST-----TCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET----TEE
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhc-----CCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeEC----CeE
Confidence 4569999999999999999998886 3446788889889999999999999999999999999999887 678
Q ss_pred EEEEeeeccc
Q 003964 701 ASLAYARIQG 710 (783)
Q Consensus 701 ~~v~yAriQG 710 (783)
+.|.||+-+.
T Consensus 84 l~V~~a~~~~ 93 (102)
T 2fc8_A 84 VTLDWAKPKG 93 (102)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEecCCC
Confidence 9999998543
No 243
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.85 E-value=9.9e-09 Score=93.29 Aligned_cols=97 Identities=7% Similarity=0.025 Sum_probs=82.2
Q ss_pred CCCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCcc
Q 003964 620 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 699 (783)
Q Consensus 620 ~D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~K 699 (783)
....+||.|+|||..+|.++|.+++.++ |...-+.++.|..|+.+.|||||.|.++++|.+.++.+||+.+. .+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~--G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~----gr 76 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKY--GEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVM----GN 76 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET----TE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhc--CCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEEC----Ce
Confidence 4456899999999999999999999776 88999999999999999999999999999999999999999887 78
Q ss_pred EEEEEeeeccc-HHHHHHHhccCc
Q 003964 700 VASLAYARIQG-QAALVTHFQNSS 722 (783)
Q Consensus 700 v~~v~yAriQG-k~ali~hf~nss 722 (783)
.+.|.+|+-.- +..+++.+.+..
T Consensus 77 ~i~V~~a~~~~~~~~~~~~~~~g~ 100 (110)
T 3s8s_A 77 IIHAQLDIKGQQRMKYYELIVNGS 100 (110)
T ss_dssp ECEEEECSTTHHHHHHHHHHHTSS
T ss_pred EEEEEECCCCcHHHHHHHHhhcCC
Confidence 89999997432 233455444433
No 244
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.85 E-value=5.8e-09 Score=94.42 Aligned_cols=74 Identities=18% Similarity=0.310 Sum_probs=62.0
Q ss_pred CCCCEEEEecC--CCCCC--------HHHHHHHhhcCCCEEEEec-------CCCcccc----ccCHHHHHHHHHHhCCC
Q 003964 192 HPSRTLFVRNI--NSNVE--------DLELRSLFEQYGDIRTLYT-------ACKHRGF----FYDVRAAEAALRALNRS 250 (783)
Q Consensus 192 ~psrtLFVGNL--p~dvT--------EeeLrelFsqfG~I~~v~~-------tgKsrGF----F~d~edAekAI~aLNG~ 250 (783)
.|++.|.+.|+ +.++. ++||++.|++||+|.+|+. +++++|| |.+.++|++|+++|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46899999998 33443 3699999999999999982 1246776 99999999999999999
Q ss_pred eeCCcEeEEEecCCC
Q 003964 251 DINGKRIKLEPSRPG 265 (783)
Q Consensus 251 ~I~Gr~IkVe~A~pr 265 (783)
.+.||+|+|.++...
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999998653
No 245
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.85 E-value=9.9e-09 Score=91.43 Aligned_cols=84 Identities=14% Similarity=0.229 Sum_probs=76.6
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHc------CccccC
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFN------GKKWEK 694 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fn------g~~w~~ 694 (783)
+..+||.|+|||..+|+++|++++..+ |....+.++.|..++.+.|||||.|.+.++|...++.++ |..+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~- 89 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQF--GDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD- 89 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc-
Confidence 456899999999999999999999876 788999999999999999999999999999999999999 88876
Q ss_pred CCCccEEEEEeeeccc
Q 003964 695 FNSEKVASLAYARIQG 710 (783)
Q Consensus 695 ~~s~Kv~~v~yAriQG 710 (783)
.+.+.|.||+-+.
T Consensus 90 ---g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 90 ---GRQLKVDLAVTRD 102 (111)
T ss_dssp ---SCEEEEECCCCCC
T ss_pred ---CEEEEEEECCCCc
Confidence 6889999998553
No 246
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.83 E-value=1.2e-08 Score=90.16 Aligned_cols=85 Identities=13% Similarity=0.140 Sum_probs=74.0
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
+..+||.|+|||..+|.++|.+++..+ |...-+.++.|. ++.+.|||||.|.++++|...++.+||+.|... ..+.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg-~~~~ 88 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPF--GVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPG-ASSS 88 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTT-CSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCC-CCcc
Confidence 446899999999999999999999876 778888999887 788899999999999999999999999988732 2277
Q ss_pred EEEEeeecc
Q 003964 701 ASLAYARIQ 709 (783)
Q Consensus 701 ~~v~yAriQ 709 (783)
+.|.||+-+
T Consensus 89 l~V~~a~~~ 97 (105)
T 2dnh_A 89 LVVKFADTD 97 (105)
T ss_dssp CEEEESCSS
T ss_pred EEEEECccC
Confidence 899999754
No 247
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.83 E-value=1.6e-08 Score=92.53 Aligned_cols=84 Identities=14% Similarity=0.192 Sum_probs=76.1
Q ss_pred CCCCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCc
Q 003964 619 GEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSE 698 (783)
Q Consensus 619 g~D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~ 698 (783)
+.+..+||.|+|||..+|.++|++++..+ |.+..+.++.|. ++.+.|||||.|.+.++|...++.++|+.+. .
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g 103 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEF--GTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLD----G 103 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTT--SCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESS----S
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEEC----C
Confidence 34677999999999999999999999886 788899999998 8889999999999999999999999999886 6
Q ss_pred cEEEEEeeecc
Q 003964 699 KVASLAYARIQ 709 (783)
Q Consensus 699 Kv~~v~yAriQ 709 (783)
+.+.|.||.-.
T Consensus 104 ~~l~V~~a~~~ 114 (124)
T 2kt5_A 104 RPMDIQLVASQ 114 (124)
T ss_dssp CEEEEEEECCT
T ss_pred cEEEEEEeCCC
Confidence 88999999743
No 248
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.82 E-value=5.5e-09 Score=90.61 Aligned_cols=83 Identities=12% Similarity=0.051 Sum_probs=70.7
Q ss_pred CCCCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCc
Q 003964 619 GEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSE 698 (783)
Q Consensus 619 g~D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~ 698 (783)
+....+||.|+|||..+|+++|++++..+ |...-+.++.|-.++.+.|||||.|.++++|.+.++.+||+.+. .
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----g 84 (95)
T 2ek1_A 11 GKPGPTVIKVQNMPFTVSIDEILDFFYGY--QVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG----S 84 (95)
T ss_dssp ----CEEEEEECCCTTCCHHHHHHHTTTS--CBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET----T
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeEC----C
Confidence 34556999999999999999999999776 66666778888888999999999999999999999999999987 6
Q ss_pred cEEEEEeee
Q 003964 699 KVASLAYAR 707 (783)
Q Consensus 699 Kv~~v~yAr 707 (783)
+.+.|.+|.
T Consensus 85 r~l~v~~a~ 93 (95)
T 2ek1_A 85 RKVKLSGPS 93 (95)
T ss_dssp EECEEECCC
T ss_pred cEEEEEecc
Confidence 778888874
No 249
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.82 E-value=1.2e-08 Score=89.52 Aligned_cols=82 Identities=12% Similarity=0.154 Sum_probs=74.5
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
+..+||.|+|||..+|+++|++++..+ |...-+.++.|-.++.+.|||||.|.+.++|...++ ++|+.+. .+.
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~----g~~ 80 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKF--GVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIM----GKK 80 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSS--SCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSS----SCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEEC----CeE
Confidence 556899999999999999999999876 788899999999999999999999999999999998 9999886 678
Q ss_pred EEEEeeecc
Q 003964 701 ASLAYARIQ 709 (783)
Q Consensus 701 ~~v~yAriQ 709 (783)
+.|.||+-+
T Consensus 81 l~V~~a~~~ 89 (99)
T 2dgs_A 81 VEVKRAEPR 89 (99)
T ss_dssp CEEEECCCC
T ss_pred EEEEECCCC
Confidence 899998754
No 250
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.81 E-value=9.5e-09 Score=94.87 Aligned_cols=79 Identities=18% Similarity=0.316 Sum_probs=73.0
Q ss_pred CceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccEE
Q 003964 622 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 701 (783)
Q Consensus 622 ~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv~ 701 (783)
..+||.|+|||..+|.++|++++..+ |....+.++.|..++.+.|||||.|.++++|.+.++.++|+.+. .+.+
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 135 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPF--GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF----GRTI 135 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGG--SCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEET----TEEE
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhc--CCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEEC----CEEE
Confidence 46899999999999999999999887 88999999999999999999999999999999999999999887 6888
Q ss_pred EEEee
Q 003964 702 SLAYA 706 (783)
Q Consensus 702 ~v~yA 706 (783)
.|.||
T Consensus 136 ~v~~A 140 (140)
T 2ku7_A 136 RVNLA 140 (140)
T ss_dssp EEEC-
T ss_pred EEEeC
Confidence 99887
No 251
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.80 E-value=6.2e-09 Score=92.36 Aligned_cols=81 Identities=17% Similarity=0.260 Sum_probs=74.0
Q ss_pred CceeEEeecCCC------ccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCC
Q 003964 622 TRTTLMIKNIPN------KYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKF 695 (783)
Q Consensus 622 ~RTTvMIRNIPN------k~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~ 695 (783)
..+||.|.|||. ..+.++|.+++..+ |...-+.++.|-.|+.+.|||||.|.++++|.+.++.+||+.+..
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~--G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g- 81 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKA--GKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL- 81 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTT--SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS-
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhc--CCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC-
Confidence 358999999999 99999999999876 889999999999999999999999999999999999999998872
Q ss_pred CCccEEEEEeee
Q 003964 696 NSEKVASLAYAR 707 (783)
Q Consensus 696 ~s~Kv~~v~yAr 707 (783)
.+.+.|.||+
T Consensus 82 --~r~l~V~~a~ 91 (100)
T 3ns6_A 82 --KHRLFLYTMK 91 (100)
T ss_dssp --SCBCEEEESH
T ss_pred --CeEEEEEECc
Confidence 2788999986
No 252
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.80 E-value=1.3e-08 Score=92.81 Aligned_cols=83 Identities=24% Similarity=0.324 Sum_probs=75.1
Q ss_pred CCCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCcc
Q 003964 620 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 699 (783)
Q Consensus 620 ~D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~K 699 (783)
.+..+||.|+|||..+|+++|.+++..+ |.+.-+.++.|. ++.+.|||||.|.+.++|...++.+||..+. .+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~----g~ 76 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKH--GPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLH----GK 76 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTS--SCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCS----SS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEEC----CE
Confidence 3566899999999999999999999877 778889999997 8899999999999999999999999999886 57
Q ss_pred EEEEEeeecc
Q 003964 700 VASLAYARIQ 709 (783)
Q Consensus 700 v~~v~yAriQ 709 (783)
.+.|.||+-+
T Consensus 77 ~l~V~~a~~~ 86 (116)
T 2fy1_A 77 AIKVEQAKKP 86 (116)
T ss_dssp BCEEEECCCS
T ss_pred EEEEEECCCC
Confidence 8899999744
No 253
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.80 E-value=1.1e-08 Score=90.52 Aligned_cols=81 Identities=11% Similarity=0.142 Sum_probs=73.6
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
+..+||.|+|||..+|+++|++++..+ + ..-+.++.|..++.+.|||||.|.++++|...+ .++|..+. .+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~----g~~ 84 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDL--S-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLG----DRS 84 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTS--C-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEET----TEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhC--C-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeEC----CeE
Confidence 456899999999999999999999877 5 888999999999999999999999999999999 89999887 678
Q ss_pred EEEEeeecc
Q 003964 701 ASLAYARIQ 709 (783)
Q Consensus 701 ~~v~yAriQ 709 (783)
+.|.||+-+
T Consensus 85 l~V~~a~~~ 93 (103)
T 2dng_A 85 LRVDIAEGR 93 (103)
T ss_dssp CEEEECCCC
T ss_pred EEEEEecCC
Confidence 899998744
No 254
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.80 E-value=7.6e-09 Score=91.64 Aligned_cols=83 Identities=11% Similarity=0.126 Sum_probs=75.3
Q ss_pred CCCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCcc
Q 003964 620 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 699 (783)
Q Consensus 620 ~D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~K 699 (783)
.+..+||.|+|||..+|+++|++++..+ |....+.++.|..++.+.|||||.|.++++|..+++. +|+.+. .+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~----g~ 85 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQY--GEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLD----GR 85 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTT--SCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEET----TE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeEC----CE
Confidence 3566899999999999999999999886 8899999999999999999999999999999999999 999887 67
Q ss_pred EEEEEeeecc
Q 003964 700 VASLAYARIQ 709 (783)
Q Consensus 700 v~~v~yAriQ 709 (783)
.+.|.||+-+
T Consensus 86 ~l~V~~a~~~ 95 (105)
T 2dh8_A 86 NIDPKPCTPR 95 (105)
T ss_dssp EEBCCCSCCS
T ss_pred EEEEEEccCC
Confidence 8899998744
No 255
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.79 E-value=2e-08 Score=88.61 Aligned_cols=83 Identities=18% Similarity=0.280 Sum_probs=73.3
Q ss_pred CCCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCcc
Q 003964 620 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 699 (783)
Q Consensus 620 ~D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~K 699 (783)
.+..+||.|+|||..+|.++|++++..+ |.+..+.++.|-.+ +.|||||.|.++++|...++.++|+.+. .+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~ 83 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQI--GPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKIL----GK 83 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHH--SCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEET----TE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhc--CCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcC----CC
Confidence 3566899999999999999999999887 78888889888433 6899999999999999999999999987 68
Q ss_pred EEEEEeeeccc
Q 003964 700 VASLAYARIQG 710 (783)
Q Consensus 700 v~~v~yAriQG 710 (783)
.+.|.||+-+.
T Consensus 84 ~l~V~~a~~~~ 94 (103)
T 2cqi_A 84 EVKVNWATTPS 94 (103)
T ss_dssp EEEEEECCCTT
T ss_pred eEEEEECCCCc
Confidence 89999998543
No 256
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=1.8e-08 Score=90.34 Aligned_cols=82 Identities=13% Similarity=0.099 Sum_probs=73.7
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
+..+||.|+|||..+|+++|++++..+ |.+..+.++.|- ++.+.|||||.|.+.++|...++.++|+.+. .+.
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~--G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 85 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMA--GVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLF----DRP 85 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEET----TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeC----CCE
Confidence 456899999999999999999999876 788889999986 5888999999999999999999999999886 688
Q ss_pred EEEEeeecc
Q 003964 701 ASLAYARIQ 709 (783)
Q Consensus 701 ~~v~yAriQ 709 (783)
+.|.||+-+
T Consensus 86 l~v~~a~~~ 94 (114)
T 2do0_A 86 MHVKMDERA 94 (114)
T ss_dssp CEEEECSCC
T ss_pred EEEEEcccC
Confidence 899998754
No 257
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.79 E-value=8.9e-09 Score=92.93 Aligned_cols=82 Identities=17% Similarity=0.184 Sum_probs=74.0
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
...+||.|+|||..+|+++|++++..+ |.+..+.++.|..++.+.|||||.|.+.++|.++++.+++ .+. .+.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~----g~~ 87 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGF--GDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IID----GRK 87 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTT--SCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EET----TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC--CCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCC----CEE
Confidence 456899999999999999999999876 7899999999999999999999999999999999999998 565 588
Q ss_pred EEEEeeecc
Q 003964 701 ASLAYARIQ 709 (783)
Q Consensus 701 ~~v~yAriQ 709 (783)
+.|.||+-+
T Consensus 88 l~V~~a~~~ 96 (116)
T 2cqd_A 88 ANVNLAYLG 96 (116)
T ss_dssp CEEEESTTT
T ss_pred EEEEEcccC
Confidence 899999644
No 258
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.79 E-value=1.8e-08 Score=88.95 Aligned_cols=81 Identities=16% Similarity=0.228 Sum_probs=72.1
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
...+||.|+|||..+|.++|++++..+ |....+.++.|-.. +.|||||.|.+.++|...++.++|+.|. .+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 84 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQF--GKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVE----GRK 84 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGT--SCEEEEEEECCTTT--TCCEEEEEESCHHHHHHHHHHHTTCEET----TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCC--CcEEEEEEECCHHHHHHHHHHhCCCEEC----CEE
Confidence 445899999999999999999999876 78888999888543 8999999999999999999999999987 688
Q ss_pred EEEEeeecc
Q 003964 701 ASLAYARIQ 709 (783)
Q Consensus 701 ~~v~yAriQ 709 (783)
+.|.||+-+
T Consensus 85 l~v~~a~~~ 93 (103)
T 2cq3_A 85 IEVNNATAR 93 (103)
T ss_dssp CEEEECCSS
T ss_pred EEEEEcccC
Confidence 999998754
No 259
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.78 E-value=1.4e-08 Score=86.85 Aligned_cols=79 Identities=14% Similarity=0.186 Sum_probs=72.9
Q ss_pred ceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccEEE
Q 003964 623 RTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVAS 702 (783)
Q Consensus 623 RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv~~ 702 (783)
.+||.|+|||..+|+++|++++..+ |....+.++.|..++.+.|||||.|.++++|.+.+ .++|+.+. .+.+.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~----g~~l~ 78 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGC--GSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFR----GRQIK 78 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGG--CCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEET----TEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEEC----CcEEE
Confidence 4799999999999999999999876 78899999999999999999999999999999999 99999886 67889
Q ss_pred EEeeec
Q 003964 703 LAYARI 708 (783)
Q Consensus 703 v~yAri 708 (783)
|.||+-
T Consensus 79 V~~a~~ 84 (89)
T 3ucg_A 79 VIPKRT 84 (89)
T ss_dssp EEETTT
T ss_pred EEEccC
Confidence 999863
No 260
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.77 E-value=8.6e-09 Score=92.57 Aligned_cols=84 Identities=15% Similarity=0.167 Sum_probs=72.6
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
+.-+||.|+|||..+|+++|++++..+ |...-+.+.++..++.+.|||||.|.+.++|..+++.++|..+. .+.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~--G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----g~~ 96 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARF--QEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLY----GKI 96 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHH--HHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCS----SCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh--CCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeC----CcE
Confidence 445899999999999999999999887 56655666667668899999999999999999999999999885 678
Q ss_pred EEEEeeeccc
Q 003964 701 ASLAYARIQG 710 (783)
Q Consensus 701 ~~v~yAriQG 710 (783)
+.|.||+-+.
T Consensus 97 l~v~~a~~~~ 106 (115)
T 2cpx_A 97 LVIEFGKNKK 106 (115)
T ss_dssp CEEEECCCCS
T ss_pred EEEEEccCCC
Confidence 8999998543
No 261
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.76 E-value=3e-09 Score=90.60 Aligned_cols=71 Identities=18% Similarity=0.190 Sum_probs=65.7
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCcccc
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWE 693 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~ 693 (783)
+.-+||.|+|||..+|.++|++++..+ |....+.++.|..++.+.|||||.|.++++|...++.+||+.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPY--GKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ 73 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTT--SCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEe
Confidence 456899999999999999999998766 78889999999999999999999999999999999999999776
No 262
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.76 E-value=3.3e-08 Score=85.31 Aligned_cols=80 Identities=11% Similarity=0.144 Sum_probs=72.1
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
...+||.|+|||..+|.++|++++... ...-+.++.| .++.+.|||||.|.+.++|...++ ++|..+. .+.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~---~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~----gr~ 78 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL---KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMG----GRY 78 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS---CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEET----TEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC---CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeC----CcE
Confidence 556899999999999999999999776 5778889999 889999999999999999999999 9999886 678
Q ss_pred EEEEeeecc
Q 003964 701 ASLAYARIQ 709 (783)
Q Consensus 701 ~~v~yAriQ 709 (783)
+.|.||+-+
T Consensus 79 i~v~~a~~~ 87 (91)
T 2dgw_A 79 IEVFREKSG 87 (91)
T ss_dssp EEEEEESSC
T ss_pred EEEEECCcC
Confidence 999999754
No 263
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.76 E-value=2.5e-08 Score=95.92 Aligned_cols=86 Identities=15% Similarity=0.253 Sum_probs=77.4
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
...+||.|.|||..+|.++|.+++..+ |.+..+.|+.|..++.+.|||||.|.+.++|...++.+||..+. .+.
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~ 143 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDY--GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM----GQT 143 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEET----TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcC--CCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEEC----CEE
Confidence 345899999999999999999999887 88999999999999999999999999999999999999999886 688
Q ss_pred EEEEeeecccHH
Q 003964 701 ASLAYARIQGQA 712 (783)
Q Consensus 701 ~~v~yAriQGk~ 712 (783)
+.|.||+-++..
T Consensus 144 l~V~~a~~~~~~ 155 (165)
T 1rk8_A 144 IQVDWCFVKGPK 155 (165)
T ss_dssp CEEEESEECC--
T ss_pred EEEEEecCCCCC
Confidence 999999987754
No 264
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.76 E-value=2.8e-08 Score=84.89 Aligned_cols=80 Identities=13% Similarity=0.168 Sum_probs=70.7
Q ss_pred CCCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCcc
Q 003964 620 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 699 (783)
Q Consensus 620 ~D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~K 699 (783)
.+..+||.|+|||..+|.++|.+++..+ |...-+.++.|-.++.+.|||||.|.++++|...++. +++.+. .+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~----g~ 80 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKF--GEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLD----GR 80 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTT--SCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEET----TE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEEC----CE
Confidence 4567899999999999999999999766 8889999999999999999999999999999999965 777655 57
Q ss_pred EEEEEee
Q 003964 700 VASLAYA 706 (783)
Q Consensus 700 v~~v~yA 706 (783)
.+.|.+|
T Consensus 81 ~i~v~~A 87 (87)
T 3s7r_A 81 VIDPKKA 87 (87)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 7888886
No 265
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.75 E-value=2.7e-08 Score=87.27 Aligned_cols=80 Identities=16% Similarity=0.109 Sum_probs=70.8
Q ss_pred CCceeEEeecCCCccCHHHHH----HHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCC
Q 003964 621 DTRTTLMIKNIPNKYTSKMLL----AAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFN 696 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~----~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~ 696 (783)
...+||.|+|||..+|+++|+ +++..+ |...-+.++.|..+ .|||||.|.++++|.+.++.+||+.|.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~--G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~--- 78 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARH--GKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIG--- 78 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHH--SCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEET---
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhcccc--CcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEEC---
Confidence 456899999999999999999 666555 78889999999776 789999999999999999999999987
Q ss_pred CccEEEEEeeecc
Q 003964 697 SEKVASLAYARIQ 709 (783)
Q Consensus 697 s~Kv~~v~yAriQ 709 (783)
.+.+.|.||+-+
T Consensus 79 -gr~l~V~~a~~~ 90 (96)
T 2dgx_A 79 -SKKILVSLATGA 90 (96)
T ss_dssp -TEEEEEEECCCS
T ss_pred -CeEEEEEEcCCC
Confidence 789999999743
No 266
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.75 E-value=7.9e-09 Score=95.81 Aligned_cols=81 Identities=16% Similarity=0.295 Sum_probs=72.9
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccce--EEeccccccccceeEEEEeccChhHHHHHHHHHcCc----cccC
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDF--LYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGK----KWEK 694 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDF--lYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~----~w~~ 694 (783)
...+||.|+|||..+|.++|++++..+ |.... +.++.|..++.+.|||||.|.++ ++.+.++.+||+ .+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~--G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~- 96 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPY--AVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID- 96 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGG--CCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh--CCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC-
Confidence 456899999999999999999999877 67766 99999999999999999999999 999999999999 665
Q ss_pred CCCccEEEEEeeec
Q 003964 695 FNSEKVASLAYARI 708 (783)
Q Consensus 695 ~~s~Kv~~v~yAri 708 (783)
.+.+.|.||+-
T Consensus 97 ---gr~l~V~~a~~ 107 (131)
T 2m2b_A 97 ---GKTINVEFAKG 107 (131)
T ss_dssp ---GCCCCCEECCC
T ss_pred ---CEEEEEEECCC
Confidence 67888999874
No 267
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.75 E-value=1.1e-08 Score=95.32 Aligned_cols=83 Identities=14% Similarity=0.184 Sum_probs=75.1
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
+..+||.|+|||..+|.++|++++..+ |...-+.++.|..++...|||||.|.++++|.+.++.++|..+. .+.
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~--G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~----g~~ 117 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKY--GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD----GRR 117 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTT--SCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSS----SSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC----CEE
Confidence 445899999999999999999999776 78889999999999999999999999999999999999999886 678
Q ss_pred EEEEeeecc
Q 003964 701 ASLAYARIQ 709 (783)
Q Consensus 701 ~~v~yAriQ 709 (783)
+.|.||+-+
T Consensus 118 l~V~~a~~~ 126 (129)
T 2kxn_B 118 IRVDFSITK 126 (129)
T ss_dssp CEESCCSSS
T ss_pred EEEEEecCC
Confidence 899998743
No 268
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.74 E-value=1.8e-08 Score=89.28 Aligned_cols=81 Identities=15% Similarity=0.187 Sum_probs=73.4
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEecccccc-ccceeEEEEeccChhHHHHHHHHHcCccccCCCCcc
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKN-KCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 699 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~-~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~K 699 (783)
...+||.|+|||..+|+++|++++..+ | ..-+.++.|..+ +.+.|||||.|.++++|...+ .++|..+. .+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~----g~ 84 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGL--N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG----NK 84 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTS--C-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEET----TE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHC--C-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeC----Cc
Confidence 445899999999999999999999877 6 889999999887 889999999999999999999 99999886 68
Q ss_pred EEEEEeeecc
Q 003964 700 VASLAYARIQ 709 (783)
Q Consensus 700 v~~v~yAriQ 709 (783)
.+.|.||+-+
T Consensus 85 ~l~V~~a~~~ 94 (104)
T 1wi8_A 85 RIRVDVADQA 94 (104)
T ss_dssp ECEEEECCCC
T ss_pred EEEEEEccCC
Confidence 8899999754
No 269
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.74 E-value=2.3e-08 Score=87.90 Aligned_cols=81 Identities=22% Similarity=0.349 Sum_probs=70.6
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
...+||.|+|||..+|.++|++++.+ |--+.++.| .++.+.|||||.|.++++|.+.++.++|+.+. .+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~-----~g~v~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 82 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEK-----ATFIKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIE----GRA 82 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSS-----CSEEECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEET----TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-----CCEEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeC----CeE
Confidence 45699999999999999999999865 334578888 78889999999999999999999999999887 788
Q ss_pred EEEEeeecccH
Q 003964 701 ASLAYARIQGQ 711 (783)
Q Consensus 701 ~~v~yAriQGk 711 (783)
+.|.||+-+.+
T Consensus 83 l~v~~a~~~~~ 93 (101)
T 2fc9_A 83 IRLELQGPRGS 93 (101)
T ss_dssp EEEEECSSCCC
T ss_pred EEEEEcCCCCC
Confidence 99999986643
No 270
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.74 E-value=2.5e-08 Score=89.16 Aligned_cols=84 Identities=21% Similarity=0.343 Sum_probs=72.3
Q ss_pred eeEEeecCCCccCHHHHHHHHhhhCCCccceE-Eeccccccccc-eeEEEEeccChhHHHHHHHHHcCccccCCC-CccE
Q 003964 624 TTLMIKNIPNKYTSKMLLAAIDENHRGTYDFL-YLPIDFKNKCN-VGYAFINMVSPSHIISFYEAFNGKKWEKFN-SEKV 700 (783)
Q Consensus 624 TTvMIRNIPNk~tq~~L~~~ide~~~g~YDFl-YLPiDf~~~~N-~GYAFINf~~~~~~~~f~~~fng~~w~~~~-s~Kv 700 (783)
|.|.||+||+.+|++.++++|... .++|++ |.|-+...+.+ -+.|||||.+++++..|.+.|+|+.|..-+ .+-.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~--~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~ 79 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYP 79 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSC--CCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCc--ccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEee
Confidence 789999999999999999999875 478866 56888776644 689999999999999999999999998653 4577
Q ss_pred EEEEeeecc
Q 003964 701 ASLAYARIQ 709 (783)
Q Consensus 701 ~~v~yAriQ 709 (783)
+.|.||-.|
T Consensus 80 a~VE~AP~q 88 (91)
T 1uw4_A 80 AIVEFAPFQ 88 (91)
T ss_dssp CEEEECSSC
T ss_pred eEEEEcCCC
Confidence 889999877
No 271
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.73 E-value=4.1e-08 Score=86.59 Aligned_cols=82 Identities=12% Similarity=0.189 Sum_probs=72.1
Q ss_pred CCCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCcc
Q 003964 620 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 699 (783)
Q Consensus 620 ~D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~K 699 (783)
.+..+||.|+|||..+|.++|++++..+ |....+.++.|..++.+.|||||.|.+.++|...++ +++.+. .+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~----g~ 83 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTF--GEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMID----GR 83 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGG--SCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEET----TE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhc--CCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeC----Ce
Confidence 3556899999999999999999999887 788899999999999999999999999999999998 466554 57
Q ss_pred EEEEEeeecc
Q 003964 700 VASLAYARIQ 709 (783)
Q Consensus 700 v~~v~yAriQ 709 (783)
.+.|.||+-+
T Consensus 84 ~l~v~~a~~~ 93 (103)
T 2cqg_A 84 WCDCKLPNSK 93 (103)
T ss_dssp EEEEECCCTT
T ss_pred EEEEEecCCC
Confidence 8899998744
No 272
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=98.73 E-value=3e-08 Score=90.07 Aligned_cols=79 Identities=16% Similarity=0.213 Sum_probs=70.5
Q ss_pred ceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccEEE
Q 003964 623 RTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVAS 702 (783)
Q Consensus 623 RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv~~ 702 (783)
-|||.|+|||..+|.++|.+++.++ |...-+.++.|-. .+.|||||.|.++++|.+.++.++|+.+. .+.+.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~--G~v~~v~i~~d~~--~~kg~afV~f~~~~~A~~Ai~~l~~~~~~----g~~i~ 76 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAF--GNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLN----DRKVF 76 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEEETT--EEEEEEEEEESCHHHHHHHHHHHTTCEET----TEECE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhcc--CCEEEEEEeecCC--CCCceEEEEECCHHHHHHHHHHcCCCEEC----CEEEE
Confidence 4899999999999999999999887 7888888888843 36899999999999999999999999987 67889
Q ss_pred EEeeecc
Q 003964 703 LAYARIQ 709 (783)
Q Consensus 703 v~yAriQ 709 (783)
|.||+-+
T Consensus 77 V~~a~~~ 83 (115)
T 4f25_A 77 VGRFKSR 83 (115)
T ss_dssp EEESSCC
T ss_pred EEECCCc
Confidence 9998754
No 273
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=1.7e-08 Score=88.98 Aligned_cols=82 Identities=13% Similarity=0.132 Sum_probs=72.7
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhh-hCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCcc-ccCCCCc
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDE-NHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKK-WEKFNSE 698 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide-~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~-w~~~~s~ 698 (783)
+..+||.|+|||..+|+++|.+++.. + |.+.-+.++.|. ++.+.|||||.|.+.++|...++.++|+. +. .
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~--G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~----g 79 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVY--PSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLG----S 79 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHC--TTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSS----S
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhC--CCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccC----C
Confidence 45689999999999999999999988 6 778889999998 88899999999999999999999999998 65 4
Q ss_pred cEEEEEeeecc
Q 003964 699 KVASLAYARIQ 709 (783)
Q Consensus 699 Kv~~v~yAriQ 709 (783)
+.+.|.||+-+
T Consensus 80 ~~l~v~~a~~~ 90 (104)
T 2dhg_A 80 KPVRLSVAIPK 90 (104)
T ss_dssp SCCCCCBCCCC
T ss_pred EeEEEEEccCC
Confidence 66788888643
No 274
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.73 E-value=9e-09 Score=88.54 Aligned_cols=79 Identities=15% Similarity=0.188 Sum_probs=71.1
Q ss_pred eeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccEEEE
Q 003964 624 TTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASL 703 (783)
Q Consensus 624 TTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv~~v 703 (783)
+||.|+|||..+|+++|++++..+ |...-+.++.|..++.+.|||||.|.+.+ |.+.++.+||+.+. .+.+.|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~----g~~l~V 74 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQF--GKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFM----GRTIRV 74 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHH--TCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCS----SSSCSE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhc--CCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEEC----CeEEEE
Confidence 789999999999999999999887 78889999999999999999999999999 99999999999886 678889
Q ss_pred Eeeecc
Q 003964 704 AYARIQ 709 (783)
Q Consensus 704 ~yAriQ 709 (783)
.||.-+
T Consensus 75 ~~a~~~ 80 (90)
T 2ki2_A 75 TEANPK 80 (90)
T ss_dssp EEC---
T ss_pred EEcCCC
Confidence 998754
No 275
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.73 E-value=3.7e-09 Score=95.42 Aligned_cols=64 Identities=30% Similarity=0.426 Sum_probs=55.5
Q ss_pred EecCCCCCCHHHHHHHh------------hcCCCEEEEe----cCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeE
Q 003964 199 VRNINSNVEDLELRSLF------------EQYGDIRTLY----TACKHRGF----FYDVRAAEAALRALNRSDINGKRIK 258 (783)
Q Consensus 199 VGNLp~dvTEeeLrelF------------sqfG~I~~v~----~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~Ik 258 (783)
+.+|++++++++|+++| ++||+|.+|+ .+++++|| |.+.++|++|+++|||+.+.||+|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 66777888888877776 9999999998 33567888 9999999999999999999999999
Q ss_pred EEec
Q 003964 259 LEPS 262 (783)
Q Consensus 259 Ve~A 262 (783)
|+++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 276
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.72 E-value=3.6e-08 Score=93.27 Aligned_cols=83 Identities=19% Similarity=0.322 Sum_probs=76.9
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
...+||.|+|||..+|.++|++++..+ |....+.++.|-.++.+.|||||.|.+.++|...++.+||+.|. .+.
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~--G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 141 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKY--GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD----GRE 141 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHH--SCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESS----SSE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC----CeE
Confidence 456899999999999999999999877 78999999999999999999999999999999999999999886 688
Q ss_pred EEEEeeecc
Q 003964 701 ASLAYARIQ 709 (783)
Q Consensus 701 ~~v~yAriQ 709 (783)
+.|.||+-+
T Consensus 142 l~v~~a~~~ 150 (158)
T 2kn4_A 142 LRVQMARYG 150 (158)
T ss_dssp EEEEEECCS
T ss_pred EEEEECCCC
Confidence 999999854
No 277
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.72 E-value=3.8e-08 Score=94.88 Aligned_cols=88 Identities=17% Similarity=0.127 Sum_probs=76.4
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
+.++||.|+|||..+|.++|++++..+..-...-+.++.|-.++.+.|||||.|.+.++|.+.++.+||+.+. .+.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~----Gr~ 128 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN----GEK 128 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET----TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC----CeE
Confidence 5679999999999999999999998772227888999999999999999999999999999999999999987 689
Q ss_pred EEEEeeecccHH
Q 003964 701 ASLAYARIQGQA 712 (783)
Q Consensus 701 ~~v~yAriQGk~ 712 (783)
+.|.||+-|...
T Consensus 129 l~V~~a~~~~~~ 140 (156)
T 3n9u_C 129 VDVRPATRQNLS 140 (156)
T ss_dssp CEEEECCHHHHH
T ss_pred eEEEEcCCCcch
Confidence 999999855433
No 278
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.71 E-value=3.7e-08 Score=87.93 Aligned_cols=80 Identities=13% Similarity=0.210 Sum_probs=69.9
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
...+||.|+|||..+|+++|++++.++ |...-+.++.+ +.+.|||||.|.+.++|...++.+||+.+. .+.
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 90 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKY--GAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYD----GYR 90 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEET----TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEEC----CeE
Confidence 345899999999999999999999887 77777888664 447899999999999999999999999886 688
Q ss_pred EEEEeeecc
Q 003964 701 ASLAYARIQ 709 (783)
Q Consensus 701 ~~v~yAriQ 709 (783)
+.|.||+-+
T Consensus 91 l~V~~a~~~ 99 (109)
T 1x4a_A 91 LRVEFPRSG 99 (109)
T ss_dssp CEEECCCCC
T ss_pred EEEEEcccC
Confidence 999999754
No 279
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.71 E-value=2.3e-08 Score=87.89 Aligned_cols=76 Identities=13% Similarity=0.176 Sum_probs=68.9
Q ss_pred eeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccEEEE
Q 003964 624 TTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASL 703 (783)
Q Consensus 624 TTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv~~v 703 (783)
|||.|+|||..+|+++|++++.++ |...-+.++.| +.|||||.|.++++|...++.++|+.+. .+.+.|
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~V 69 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYY--GPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVIC----GSRVRV 69 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHH--CCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSS----SCCCEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeEC----CcEEEE
Confidence 799999999999999999999888 77888888888 7899999999999999999999999876 567899
Q ss_pred Eeeeccc
Q 003964 704 AYARIQG 710 (783)
Q Consensus 704 ~yAriQG 710 (783)
.||+-+.
T Consensus 70 ~~a~~~~ 76 (101)
T 2hvz_A 70 ELSTGMP 76 (101)
T ss_dssp EESSSCC
T ss_pred EEccCCC
Confidence 9998654
No 280
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.71 E-value=1.9e-08 Score=83.76 Aligned_cols=76 Identities=13% Similarity=0.139 Sum_probs=68.2
Q ss_pred eeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccEEEE
Q 003964 624 TTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASL 703 (783)
Q Consensus 624 TTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv~~v 703 (783)
|||.|+|||..+|+++|++++... |....+.++.|..++.+.|||||.|.++++|...++.++ ..+. .+.+.|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~--G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~----g~~l~v 73 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQF--GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELD----SKTIDP 73 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTT--SCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCS----SCCCEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccC----CEEEEE
Confidence 689999999999999999999876 788899999999999999999999999999999999988 6665 456777
Q ss_pred Eee
Q 003964 704 AYA 706 (783)
Q Consensus 704 ~yA 706 (783)
.||
T Consensus 74 ~~a 76 (77)
T 1uaw_A 74 KVA 76 (77)
T ss_dssp EEC
T ss_pred Eec
Confidence 776
No 281
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.70 E-value=1.2e-08 Score=95.75 Aligned_cols=85 Identities=19% Similarity=0.310 Sum_probs=76.9
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
+..+||.|+|||..+|.++|++++..+ |...-+.++.|..++.+.|||||.|.+.++|.+.++.++|+.+. .+.
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~--G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~----g~~ 118 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKY--GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD----GRE 118 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGG--SCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSS----SSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC----CEE
Confidence 345899999999999999999999887 78889999999999999999999999999999999999999887 578
Q ss_pred EEEEeeecccH
Q 003964 701 ASLAYARIQGQ 711 (783)
Q Consensus 701 ~~v~yAriQGk 711 (783)
+.|.||+-+.+
T Consensus 119 l~V~~a~~~~~ 129 (135)
T 2lea_A 119 LRVQMARYGRP 129 (135)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEECCCCCC
Confidence 89999986543
No 282
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=5e-08 Score=88.04 Aligned_cols=72 Identities=21% Similarity=0.225 Sum_probs=59.8
Q ss_pred CCEEEEecCC-------CCCCHHHHHHHhhcCCCEEEEecCCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEec
Q 003964 194 SRTLFVRNIN-------SNVEDLELRSLFEQYGDIRTLYTACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPS 262 (783)
Q Consensus 194 srtLFVGNLp-------~dvTEeeLrelFsqfG~I~~v~~tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A 262 (783)
..+|-|.... .++++++|+++|++||+|++|+..++++|| |.+.++|++||+.+++ +.|++|+|+|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a 87 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWL 87 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEc
Confidence 3466666544 468999999999999999999965677777 9999999999998554 67999999999
Q ss_pred CCCcc
Q 003964 263 RPGGA 267 (783)
Q Consensus 263 ~pr~~ 267 (783)
+++..
T Consensus 88 ~~~~~ 92 (100)
T 2d9o_A 88 EGQPQ 92 (100)
T ss_dssp SCCCC
T ss_pred cCCCC
Confidence 87754
No 283
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.70 E-value=2.4e-08 Score=82.98 Aligned_cols=75 Identities=15% Similarity=0.183 Sum_probs=67.7
Q ss_pred eEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccEEEEE
Q 003964 625 TLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASLA 704 (783)
Q Consensus 625 TvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv~~v~ 704 (783)
+|.|+|||..+|+++|++++... |...-+.++.|..++.+.|||||.|.++++|...++ ++|+.+. .+.+.|.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~----g~~l~v~ 73 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQF--GKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEIN----NKMVECK 73 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTT--SCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSS----SCCCEEE
T ss_pred CEEEecCCCCCCHHHHHHHHHhc--CCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEEC----CEEEEEE
Confidence 58999999999999999999886 788899999999999999999999999999999887 8998886 5667787
Q ss_pred ee
Q 003964 705 YA 706 (783)
Q Consensus 705 yA 706 (783)
||
T Consensus 74 ~A 75 (75)
T 2mss_A 74 KA 75 (75)
T ss_dssp CC
T ss_pred eC
Confidence 76
No 284
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.69 E-value=3.9e-08 Score=87.45 Aligned_cols=84 Identities=14% Similarity=0.080 Sum_probs=72.4
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCc-cceEEec-cccccccceeEEEEeccChhHHHHHHHHHc--CccccCCC
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGT-YDFLYLP-IDFKNKCNVGYAFINMVSPSHIISFYEAFN--GKKWEKFN 696 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~-YDFlYLP-iDf~~~~N~GYAFINf~~~~~~~~f~~~fn--g~~w~~~~ 696 (783)
...+||.|+|||..+|.++|++++.++ |. ..-+.++ .|..++.+.|||||.|.++++|...++.++ +..|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~--G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~--- 80 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKV--TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLW--- 80 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHH--STTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBT---
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHh--cCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceec---
Confidence 456899999999999999999999988 55 6677777 788888999999999999999999999996 47776
Q ss_pred CccEEEEEeeeccc
Q 003964 697 SEKVASLAYARIQG 710 (783)
Q Consensus 697 s~Kv~~v~yAriQG 710 (783)
.+.+.|.||+-+.
T Consensus 81 -g~~l~V~~a~~~~ 93 (109)
T 2dis_A 81 -GHQIAVDWAEPEI 93 (109)
T ss_dssp -TBCCEEEESCSSC
T ss_pred -CCeEEEEEcCCCC
Confidence 5678999997543
No 285
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.69 E-value=3.3e-08 Score=91.66 Aligned_cols=73 Identities=16% Similarity=0.232 Sum_probs=61.3
Q ss_pred CCCCEEEEecCCC--CC---CHHHHHHHhhcCCCEEEEe-----c----CCCcccc----ccCHHHHHHHHHHhCCCeeC
Q 003964 192 HPSRTLFVRNINS--NV---EDLELRSLFEQYGDIRTLY-----T----ACKHRGF----FYDVRAAEAALRALNRSDIN 253 (783)
Q Consensus 192 ~psrtLFVGNLp~--dv---TEeeLrelFsqfG~I~~v~-----~----tgKsrGF----F~d~edAekAI~aLNG~~I~ 253 (783)
+++++|++.|+-. ++ -++||++.|++||+|.+|+ . +++++|| |.+.++|++|+++|||+.+.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3689999999832 22 3689999999999999987 1 2345676 99999999999999999999
Q ss_pred CcEeEEEecCC
Q 003964 254 GKRIKLEPSRP 264 (783)
Q Consensus 254 Gr~IkVe~A~p 264 (783)
||.|+|.++..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999864
No 286
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.68 E-value=4e-08 Score=88.36 Aligned_cols=82 Identities=9% Similarity=0.105 Sum_probs=74.6
Q ss_pred CceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccEE
Q 003964 622 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 701 (783)
Q Consensus 622 ~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv~ 701 (783)
..+||.|+|||..+|.++|++++..+ |.+.-+.++.|-.++.+.|||||.|.+.++|...+ .++|+.+. .+.+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~----g~~l 96 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAV--GKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLL----GVPI 96 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTT--SCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEET----TEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC--CCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeC----CeEE
Confidence 34899999999999999999999776 78888999999999999999999999999999999 99999886 6889
Q ss_pred EEEeeeccc
Q 003964 702 SLAYARIQG 710 (783)
Q Consensus 702 ~v~yAriQG 710 (783)
.|.||+-+.
T Consensus 97 ~V~~a~~~~ 105 (114)
T 2cq4_A 97 IVQASQAEK 105 (114)
T ss_dssp EEEEHHHHH
T ss_pred EEEecCCCc
Confidence 999997554
No 287
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.68 E-value=3e-08 Score=89.47 Aligned_cols=82 Identities=16% Similarity=0.130 Sum_probs=74.1
Q ss_pred CceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccEE
Q 003964 622 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 701 (783)
Q Consensus 622 ~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv~ 701 (783)
..+||.|+|||..+|.++|++++..+ |...-+.++.|..++.+.|||||.|.+.++|...++. +|+.+. .+.+
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~----g~~l 98 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQW--GKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSID----GRVV 98 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSS--CCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEET----TEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEEC----CEEE
Confidence 34899999999999999999999766 7888999999999999999999999999999999998 998886 6899
Q ss_pred EEEeeeccc
Q 003964 702 SLAYARIQG 710 (783)
Q Consensus 702 ~v~yAriQG 710 (783)
.|.||+-+.
T Consensus 99 ~V~~a~~~~ 107 (116)
T 1x4b_A 99 EPKRAVARE 107 (116)
T ss_dssp EEECCSSCC
T ss_pred EEEECCCCc
Confidence 999997553
No 288
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.67 E-value=4.6e-08 Score=87.99 Aligned_cols=81 Identities=15% Similarity=0.208 Sum_probs=71.6
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
...+||.|+|||..+|.++|++++..+ |+...+.++.|-. .+.|||||.|.+.++|.+.++.++|+.+. .+.
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~----g~~ 98 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQF--GKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVE----GRK 98 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGT--CCCSCEEECCBTT--BCTTEEEEECCCSHHHHHHHHHHTTCEET----TEE
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhc--CCEEEEEEEECCC--CCceEEEEEECCHHHHHHHHHHcCCCEEC----CEE
Confidence 455899999999999999999999877 7888899998843 38899999999999999999999999887 688
Q ss_pred EEEEeeecc
Q 003964 701 ASLAYARIQ 709 (783)
Q Consensus 701 ~~v~yAriQ 709 (783)
+.|.||+-+
T Consensus 99 l~V~~a~~~ 107 (109)
T 2err_A 99 IEVNNATAR 107 (109)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999998743
No 289
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.67 E-value=5.6e-08 Score=90.62 Aligned_cols=96 Identities=10% Similarity=0.148 Sum_probs=80.9
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCC--CccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCc
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHR--GTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSE 698 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~--g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~ 698 (783)
+..+||.|+|||-..|.++|++++..++. |..+-++|+.| +++...|||||.|.++++|.+.++. +++.+. .
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~----g 94 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLG----K 94 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESS----S
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeC----C
Confidence 55689999999999999999999998865 67899999999 6888999999999999999999987 887665 5
Q ss_pred cEEEEEeeecccHHHHHHHhccCc
Q 003964 699 KVASLAYARIQGQAALVTHFQNSS 722 (783)
Q Consensus 699 Kv~~v~yAriQGk~ali~hf~nss 722 (783)
+.++|..|.-+-....+++.++++
T Consensus 95 R~i~V~~a~~~e~~~~~~~~~~~p 118 (123)
T 2dha_A 95 RYIELFRSTAAEVQQVLNRFSSAS 118 (123)
T ss_dssp CEECCEEECHHHHHHHHHHHTTCS
T ss_pred eEEEEEECCHHHHHHHHHhccCCC
Confidence 678899998666666666655554
No 290
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.66 E-value=6.5e-08 Score=88.49 Aligned_cols=93 Identities=6% Similarity=0.025 Sum_probs=76.5
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCC-CccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCcc
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHR-GTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 699 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~-g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~K 699 (783)
+..+||.|+|||...|.++|++++..... +...-+.|+.|.. +.+.|||||.|.+.++|.+.++ ++|+.+. .+
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~----gr 88 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMG----HR 88 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEET----TE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeEC----Ce
Confidence 45689999999999999999999987622 2278889999976 8889999999999999999999 9998876 67
Q ss_pred EEEEEeeecccHHHHHHHhc
Q 003964 700 VASLAYARIQGQAALVTHFQ 719 (783)
Q Consensus 700 v~~v~yAriQGk~ali~hf~ 719 (783)
.+.|.+|.-+-....+++.+
T Consensus 89 ~i~V~~a~~~~~~~~~~~~~ 108 (118)
T 2db1_A 89 YIEVFKSHRTEMDWVLKHSG 108 (118)
T ss_dssp EEEEEEECHHHHHHHHHTTS
T ss_pred EEEEEECCHHHHHHHHHHhC
Confidence 89999997555544555444
No 291
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.66 E-value=6.1e-08 Score=83.63 Aligned_cols=77 Identities=12% Similarity=0.151 Sum_probs=67.5
Q ss_pred CCCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCcc
Q 003964 620 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 699 (783)
Q Consensus 620 ~D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~K 699 (783)
.+..+||.|+|||..+|+++|++++..+ |...-+.++ .|||||.|.++++|...++.++|..+. .+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~----g~ 70 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQY--GKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLH----GV 70 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTS--SCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCS----SC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccC----Cc
Confidence 4667999999999999999999999876 677777766 589999999999999999999999886 67
Q ss_pred EEEEEeeeccc
Q 003964 700 VASLAYARIQG 710 (783)
Q Consensus 700 v~~v~yAriQG 710 (783)
.+.|.||+-+.
T Consensus 71 ~l~v~~a~~~~ 81 (90)
T 2dnq_A 71 NINVEASKNKS 81 (90)
T ss_dssp BCEEECSSCCC
T ss_pred EEEEEECCCCC
Confidence 88999998554
No 292
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.65 E-value=6.1e-08 Score=86.66 Aligned_cols=80 Identities=14% Similarity=0.191 Sum_probs=71.1
Q ss_pred CCCCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCc
Q 003964 619 GEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSE 698 (783)
Q Consensus 619 g~D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~ 698 (783)
.....+||.|+|||..+|.++|++++..+ |....+.++.| .|||||.|.+.++|..+++.++|+.|. .
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~--G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~----g 88 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPF--GQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIE----G 88 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHH--SCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEET----T
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEEC----C
Confidence 34667899999999999999999999887 67888888776 699999999999999999999999887 6
Q ss_pred cEEEEEeeeccc
Q 003964 699 KVASLAYARIQG 710 (783)
Q Consensus 699 Kv~~v~yAriQG 710 (783)
+.+.|.||+-+.
T Consensus 89 ~~l~v~~a~~~~ 100 (109)
T 1x4g_A 89 HVVKCYWGKESP 100 (109)
T ss_dssp EECEEECCCCCC
T ss_pred cEEEEEecCCCC
Confidence 889999998654
No 293
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.65 E-value=3.7e-08 Score=89.21 Aligned_cols=82 Identities=16% Similarity=0.154 Sum_probs=73.0
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCcc-ceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCcc
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTY-DFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 699 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~Y-DFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~K 699 (783)
+..+||.|+|||..+|.++|++++..+ |.. .-+.|+.|. ++.+.|||||.|.+.++|.+.++. +|+.+. .+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~----gr 84 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGI--PVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLN----GR 84 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTS--CCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEET----TE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhC--CCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccC----Ce
Confidence 456889999999999999999999876 777 789999998 888999999999999999999988 998886 68
Q ss_pred EEEEEeeeccc
Q 003964 700 VASLAYARIQG 710 (783)
Q Consensus 700 v~~v~yAriQG 710 (783)
.+.|.||.-+-
T Consensus 85 ~i~v~~a~~~~ 95 (114)
T 2cpy_A 85 EAFVHVVTLED 95 (114)
T ss_dssp EEEEEEECHHH
T ss_pred EEEEEECCHHH
Confidence 89999998543
No 294
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.64 E-value=4.5e-08 Score=85.89 Aligned_cols=76 Identities=16% Similarity=0.267 Sum_probs=66.8
Q ss_pred CceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccEE
Q 003964 622 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 701 (783)
Q Consensus 622 ~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv~ 701 (783)
..+||.|+|||..+|+++|++++.++ |....+.++.+ .|||||.|.+.++|.+.++.++|+.+. .+.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~----g~~l 81 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEKY--GKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLR----GKQL 81 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTSTT--CCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBT----TBCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhc--CCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeC----CceE
Confidence 45799999999999999999999876 67777877754 699999999999999999999999887 5788
Q ss_pred EEEeeecc
Q 003964 702 SLAYARIQ 709 (783)
Q Consensus 702 ~v~yAriQ 709 (783)
.|.||+-+
T Consensus 82 ~v~~a~~~ 89 (99)
T 2cpj_A 82 RVRFACHS 89 (99)
T ss_dssp EEEESSCC
T ss_pred EEEEcCCC
Confidence 99999754
No 295
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.63 E-value=7.7e-08 Score=94.47 Aligned_cols=85 Identities=14% Similarity=0.172 Sum_probs=76.9
Q ss_pred CCCCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCc
Q 003964 619 GEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSE 698 (783)
Q Consensus 619 g~D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~ 698 (783)
+.+..|||.|+|||..+|+++|++++.++ |.+..++++.|. ++.+.|||||.|.+.++|..+++.++|..+. .
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~--G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~----G 156 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEF--GTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLD----G 156 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHT--SCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCS----S
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEEC----C
Confidence 45677999999999999999999999886 788899999998 8899999999999999999999999999886 5
Q ss_pred cEEEEEeeeccc
Q 003964 699 KVASLAYARIQG 710 (783)
Q Consensus 699 Kv~~v~yAriQG 710 (783)
+.+.|.||....
T Consensus 157 r~l~V~~a~~~~ 168 (177)
T 2f3j_A 157 RPMDIQLVASQI 168 (177)
T ss_dssp SBCEEEEESSGG
T ss_pred EEEEEEEecCCC
Confidence 788999997543
No 296
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.63 E-value=8.2e-08 Score=86.29 Aligned_cols=81 Identities=14% Similarity=0.159 Sum_probs=71.0
Q ss_pred CCCCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCc
Q 003964 619 GEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSE 698 (783)
Q Consensus 619 g~D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~ 698 (783)
..+..+||.|+|||..+|.++|.+++..+ |...-+.++.|- .+.|||||.|.++++|...++.+||..+. .
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g 74 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKY--GPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFNVS----N 74 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCBSS----S
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCEEC----C
Confidence 34667899999999999999999999876 788888888764 34899999999999999999999999886 6
Q ss_pred cEEEEEeeec
Q 003964 699 KVASLAYARI 708 (783)
Q Consensus 699 Kv~~v~yAri 708 (783)
+.+.|.||+-
T Consensus 75 ~~l~v~~a~~ 84 (115)
T 3lqv_A 75 RYLVVLYYNA 84 (115)
T ss_dssp CBCEEEECCH
T ss_pred eEEEEEEecC
Confidence 7889999984
No 297
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.63 E-value=5.5e-08 Score=85.48 Aligned_cols=75 Identities=17% Similarity=0.125 Sum_probs=65.7
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
...+||.|+|||..+|.++|++++.++ |....+.++ .+.|||||.|.+.++|...++.+||+.|. .+.
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~--G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~ 92 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNF--GFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQ----GRN 92 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTT--SCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEET----TEE
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhC--CCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeEC----CeE
Confidence 346899999999999999999999887 666666665 45799999999999999999999999987 678
Q ss_pred EEEEeee
Q 003964 701 ASLAYAR 707 (783)
Q Consensus 701 ~~v~yAr 707 (783)
+.|.||+
T Consensus 93 l~V~~a~ 99 (101)
T 2la4_A 93 LRTGWGK 99 (101)
T ss_dssp CCCCBCC
T ss_pred EEEEecc
Confidence 8888886
No 298
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.63 E-value=5.2e-08 Score=84.70 Aligned_cols=83 Identities=18% Similarity=0.225 Sum_probs=69.9
Q ss_pred CCceeEEeecCCCccCHHHHH----HHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCC
Q 003964 621 DTRTTLMIKNIPNKYTSKMLL----AAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFN 696 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~----~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~ 696 (783)
...+||.|+|||..+|.++|+ +++..+ |...-+.++ +++.+.|||||.|.+.++|...++.++|..+.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~--G~i~~v~i~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--- 77 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRF--GQILDILVS---RSLKMRGQAFVIFKEVSSATNALRSMQGFPFY--- 77 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGG--SCEEEEECC---HHHHHTTCEEEEESSHHHHHHHHHHHTTCEET---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhC--CCEEEEEEE---cCCCcCcEEEEEeCCHHHHHHHHHHhCCCEEC---
Confidence 456899999999999999999 555544 677777776 46677899999999999999999999999886
Q ss_pred CccEEEEEeeecccHH
Q 003964 697 SEKVASLAYARIQGQA 712 (783)
Q Consensus 697 s~Kv~~v~yAriQGk~ 712 (783)
.+.+.|.||+-+.+.
T Consensus 78 -g~~l~v~~a~~~~~~ 92 (97)
T 1nu4_A 78 -DKPMRIQYAKTDSDI 92 (97)
T ss_dssp -TEECEEEECSSCCTH
T ss_pred -CcEEEEEEccCCCcc
Confidence 688999999876543
No 299
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.63 E-value=6.8e-08 Score=83.27 Aligned_cols=78 Identities=14% Similarity=0.306 Sum_probs=65.9
Q ss_pred CCCCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCc
Q 003964 619 GEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSE 698 (783)
Q Consensus 619 g~D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~ 698 (783)
|...++||.|+|||..+|.++|++++.++ ....+.+ | .+.|||||.|.++++|.+.++.+||+.+. .
T Consensus 1 Gs~~~~~l~V~nLp~~~t~~~l~~~F~~~---~v~~~~i--~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----g 67 (88)
T 1wg1_A 1 GSSGSSGILVKNLPQDSNCQEVHDLLKDY---DLKYCYV--D----RNKRTAFVTLLNGEQAQNAIQMFHQYSFR----G 67 (88)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHTCSS---CCCCEEE--E----GGGTEEEECCSCHHHHHHHHHHHTTEEET----T
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhhC---CeEEEEE--e----CCCcEEEEEECCHHHHHHHHHHhCCCeEC----C
Confidence 34567999999999999999999999766 3444555 3 56799999999999999999999999987 6
Q ss_pred cEEEEEeeecc
Q 003964 699 KVASLAYARIQ 709 (783)
Q Consensus 699 Kv~~v~yAriQ 709 (783)
+.+.|.||.-.
T Consensus 68 ~~l~V~~a~~~ 78 (88)
T 1wg1_A 68 KDLIVQLQPTD 78 (88)
T ss_dssp EEEEEEECCCC
T ss_pred cEEEEEEcCCC
Confidence 88999998743
No 300
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.62 E-value=1.1e-07 Score=83.46 Aligned_cols=78 Identities=15% Similarity=0.248 Sum_probs=68.2
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
...+||.|+|||..+|.++|++++..+..|....+.++ .|||||.|.++++|...++.+||+.+. .+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 80 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLD----GSP 80 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEET----TEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeC----CcE
Confidence 34589999999999999999999998866777777654 579999999999999999999999887 688
Q ss_pred EEEEeeeccc
Q 003964 701 ASLAYARIQG 710 (783)
Q Consensus 701 ~~v~yAriQG 710 (783)
+.|.||+-+.
T Consensus 81 l~v~~a~~~~ 90 (99)
T 2cpd_A 81 IEVTLAKPVD 90 (99)
T ss_dssp EEEECCCCCC
T ss_pred EEEEECCCCC
Confidence 9999998654
No 301
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.62 E-value=3.7e-08 Score=81.69 Aligned_cols=75 Identities=13% Similarity=0.210 Sum_probs=66.1
Q ss_pred eEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccEEEEE
Q 003964 625 TLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASLA 704 (783)
Q Consensus 625 TvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv~~v~ 704 (783)
||.|+|||..+|+++|++++... |...-+.++.|..++.+.|||||.|.++++|...++. +|+.+. .+.+.|.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~----g~~l~v~ 73 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGF--GEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVG----LSKCEIK 73 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHH--SCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBT----TBCCCEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeEC----CEEEEEE
Confidence 78999999999999999999887 7788899999999999999999999999999999986 777665 4566676
Q ss_pred ee
Q 003964 705 YA 706 (783)
Q Consensus 705 yA 706 (783)
+|
T Consensus 74 ~a 75 (75)
T 1iqt_A 74 VA 75 (75)
T ss_dssp EC
T ss_pred EC
Confidence 65
No 302
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.62 E-value=3.6e-08 Score=90.38 Aligned_cols=91 Identities=8% Similarity=0.034 Sum_probs=73.4
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
+..+||.|+|||..+|.++|++++..+ |...-+.+.+|-.++.+.|||||.|.+.++|...++ +||+.+. .+.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~--G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~----gr~ 95 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKL--DIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMG----NRF 95 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSS--CBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCST----TSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc--CCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeEC----CcE
Confidence 445899999999999999999998765 555544555666788999999999999999999999 9998876 678
Q ss_pred EEEEeeecccHHHHHHHh
Q 003964 701 ASLAYARIQGQAALVTHF 718 (783)
Q Consensus 701 ~~v~yAriQGk~ali~hf 718 (783)
+.|.||.-+.....++.+
T Consensus 96 i~V~~a~~~~~~~~~~~~ 113 (124)
T 1wel_A 96 IQVHPITKKGMLEKIDMI 113 (124)
T ss_dssp BEEEEECHHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHH
Confidence 899999866543334443
No 303
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.61 E-value=7.1e-08 Score=83.55 Aligned_cols=77 Identities=19% Similarity=0.264 Sum_probs=65.0
Q ss_pred CCCceeEEeecCCCccCHHHHHHHHhhhCCCc-cceEEeccccccccceeEEEEeccChhHHHHHHHHHcC-ccccCCCC
Q 003964 620 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGT-YDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNG-KKWEKFNS 697 (783)
Q Consensus 620 ~D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~-YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng-~~w~~~~s 697 (783)
.+..+||.|+|||..+|+++|++++..+ |. .+.+.+ .+.|||||.|.+.++|...++.+|| ..+.
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~vv~~~~~-------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~---- 71 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDR--KLPLAGQVL-------LKSGYAFVDYPDQNWAIRAIETLSGKVELH---- 71 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHT--TCCCSSCEE-------EETTEEEECCSCHHHHHHHHHHHTTTCEET----
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHc--CCceEEEEE-------cCCCEEEEEECCHHHHHHHHHHccCCeeEC----
Confidence 4567899999999999999999999887 44 444444 3579999999999999999999999 7776
Q ss_pred ccEEEEEeeecc
Q 003964 698 EKVASLAYARIQ 709 (783)
Q Consensus 698 ~Kv~~v~yAriQ 709 (783)
.+.+.|.||+-+
T Consensus 72 g~~l~v~~a~~~ 83 (93)
T 2cqh_A 72 GKIMEVDYSVSK 83 (93)
T ss_dssp TEECEEEECCCC
T ss_pred CEEEEEEEccCc
Confidence 688999999754
No 304
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.61 E-value=1.1e-07 Score=84.12 Aligned_cols=77 Identities=22% Similarity=0.331 Sum_probs=67.4
Q ss_pred CCCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCcc
Q 003964 620 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 699 (783)
Q Consensus 620 ~D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~K 699 (783)
.+..+||.|+|||..+|.++|++++..+ |...-+.++ .|||||.|.++++|..+++.++|+.+. .+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~--G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~----g~ 73 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQF--GKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLE----GE 73 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHH--SCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEET----TE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccC----CC
Confidence 3456899999999999999999999887 667777766 359999999999999999999999887 68
Q ss_pred EEEEEeeeccc
Q 003964 700 VASLAYARIQG 710 (783)
Q Consensus 700 v~~v~yAriQG 710 (783)
.+.|.||+-+.
T Consensus 74 ~l~v~~a~~~~ 84 (103)
T 2dgu_A 74 NIEIVFAKPPD 84 (103)
T ss_dssp EEEEEECCCCC
T ss_pred EEEEEEcCCCc
Confidence 99999997554
No 305
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.61 E-value=7e-08 Score=87.88 Aligned_cols=81 Identities=15% Similarity=0.213 Sum_probs=73.5
Q ss_pred CceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccEE
Q 003964 622 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 701 (783)
Q Consensus 622 ~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv~ 701 (783)
..+||.|+|||..+|.++|++++..+ |...-+.++.|-.++.+.|||||.|.+.++|...+ .++|+.+. .+.+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~----g~~l 107 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSC--GSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFR----GRTI 107 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTT--SCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEET----TEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeEC----CeEE
Confidence 35899999999999999999999876 78888999999889999999999999999999999 89999886 6889
Q ss_pred EEEeeecc
Q 003964 702 SLAYARIQ 709 (783)
Q Consensus 702 ~v~yAriQ 709 (783)
.|.||+-+
T Consensus 108 ~V~~a~~~ 115 (124)
T 2jwn_A 108 KVLPKRTN 115 (124)
T ss_dssp EEEESSCC
T ss_pred EEEECCCC
Confidence 99999743
No 306
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.61 E-value=1.1e-07 Score=85.21 Aligned_cols=78 Identities=10% Similarity=0.169 Sum_probs=68.2
Q ss_pred CceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCC-CCccE
Q 003964 622 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKF-NSEKV 700 (783)
Q Consensus 622 ~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~-~s~Kv 700 (783)
..+||.|+|||..+|+++|++++.++ |.+..+.++.| |||||.|.+.++|...++.+||+.+... ...+.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREA--GDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGG--SCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 45899999999999999999999877 77888888887 9999999999999999999999998742 22388
Q ss_pred EEEEeeec
Q 003964 701 ASLAYARI 708 (783)
Q Consensus 701 ~~v~yAri 708 (783)
+.|.||+-
T Consensus 85 i~V~~a~~ 92 (108)
T 1x4c_A 85 IRVKVDGP 92 (108)
T ss_dssp EEEEESSC
T ss_pred EEEEeCCC
Confidence 99999874
No 307
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.60 E-value=7.8e-08 Score=98.12 Aligned_cols=85 Identities=15% Similarity=0.098 Sum_probs=76.1
Q ss_pred CceeEEeecCCCccCHHHHHHHHhhhCCC--ccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCcc
Q 003964 622 TRTTLMIKNIPNKYTSKMLLAAIDENHRG--TYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 699 (783)
Q Consensus 622 ~RTTvMIRNIPNk~tq~~L~~~ide~~~g--~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~K 699 (783)
.+|||.|+|||..+|.++|++++..+ | ++.-+.|+.|-.++.+.|||||.|.+.++|.+.++.+||+.+. .+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~--G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~----Gr 140 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSL--GVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH----GQ 140 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTT--TCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBT----TB
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHH--CCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeEC----CE
Confidence 67899999999999999999999776 6 8889999999999999999999999999999999999999887 67
Q ss_pred EEEEEeeecccHH
Q 003964 700 VASLAYARIQGQA 712 (783)
Q Consensus 700 v~~v~yAriQGk~ 712 (783)
.+.|.||+-|...
T Consensus 141 ~l~V~~a~~~~~~ 153 (229)
T 3q2s_C 141 NPVVTPVNKQFLS 153 (229)
T ss_dssp CCEEEECCHHHHH
T ss_pred EeEEEECCCCccc
Confidence 8999999866544
No 308
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=98.59 E-value=2.2e-08 Score=90.43 Aligned_cols=84 Identities=21% Similarity=0.360 Sum_probs=71.1
Q ss_pred eeEEeecCCCccCHHHHHHHHhhhCCCccceE-Eeccccccccc-eeEEEEeccChhHHHHHHHHHcCccccCC-CCccE
Q 003964 624 TTLMIKNIPNKYTSKMLLAAIDENHRGTYDFL-YLPIDFKNKCN-VGYAFINMVSPSHIISFYEAFNGKKWEKF-NSEKV 700 (783)
Q Consensus 624 TTvMIRNIPNk~tq~~L~~~ide~~~g~YDFl-YLPiDf~~~~N-~GYAFINf~~~~~~~~f~~~fng~~w~~~-~s~Kv 700 (783)
-.|.||+||+.+|++.+++.|+.... .||+ |.|-|...+.+ -..|||||++++++..|.+.|+|+.|..- +.+-.
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~--~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPA--HDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSS--EEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCc--cceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 46999999999999999999987543 4655 68888777655 48899999999999999999999999865 34578
Q ss_pred EEEEeeecc
Q 003964 701 ASLAYARIQ 709 (783)
Q Consensus 701 ~~v~yAriQ 709 (783)
+.|+||-.|
T Consensus 88 a~VE~APyq 96 (97)
T 2l08_A 88 AVVEFAPFQ 96 (97)
T ss_dssp EEEEECCCC
T ss_pred eEEEecCCC
Confidence 889999877
No 309
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.59 E-value=1.1e-07 Score=85.87 Aligned_cols=78 Identities=17% Similarity=0.314 Sum_probs=68.2
Q ss_pred CCCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCcc
Q 003964 620 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 699 (783)
Q Consensus 620 ~D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~K 699 (783)
....+||.|+|||..+|+++|.+++..+ |...-+.+. .|||||.|.+.++|...++.++|+.+. .+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~--G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~----g~ 93 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPF--GPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFA----NQ 93 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTT--SCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEET----TE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc--CCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEEC----Ce
Confidence 4556999999999999999999999876 677777666 699999999999999999999999986 68
Q ss_pred EEEEEeeecccH
Q 003964 700 VASLAYARIQGQ 711 (783)
Q Consensus 700 v~~v~yAriQGk 711 (783)
.+.|.||+-+.+
T Consensus 94 ~l~V~~a~~~~~ 105 (108)
T 2jvo_A 94 PLEVVYSKLPAK 105 (108)
T ss_dssp ECEEESCSCCC-
T ss_pred EEEEEEecCCCC
Confidence 899999987654
No 310
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.58 E-value=5.7e-08 Score=87.53 Aligned_cols=83 Identities=5% Similarity=0.106 Sum_probs=71.2
Q ss_pred CceeEEeecCCCccCHHHHH---HHHhhhCCCccceEEecccccc---ccceeEEEEeccChhHHHHHHHHHcCccccCC
Q 003964 622 TRTTLMIKNIPNKYTSKMLL---AAIDENHRGTYDFLYLPIDFKN---KCNVGYAFINMVSPSHIISFYEAFNGKKWEKF 695 (783)
Q Consensus 622 ~RTTvMIRNIPNk~tq~~L~---~~ide~~~g~YDFlYLPiDf~~---~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~ 695 (783)
.++||.|.|||..+|+++|+ +++..+ |...-+.++.|-.+ +.+.|||||.|.++++|.+.++.+||+.+.
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~--G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~-- 89 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKF--GKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD-- 89 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTT--SCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET--
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhcc--CCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC--
Confidence 46899999999999999998 666554 78888889888764 356799999999999999999999999886
Q ss_pred CCccEEEEEeeeccc
Q 003964 696 NSEKVASLAYARIQG 710 (783)
Q Consensus 696 ~s~Kv~~v~yAriQG 710 (783)
.+.+.|.||+-+-
T Consensus 90 --gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 --GRTLKASLGTTKY 102 (111)
T ss_dssp --TEEEEEESCCCCS
T ss_pred --CEEEEEEeccccc
Confidence 6889999998553
No 311
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.58 E-value=1e-07 Score=80.94 Aligned_cols=75 Identities=17% Similarity=0.117 Sum_probs=65.4
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHH-cCccccCCCCcc
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAF-NGKKWEKFNSEK 699 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~f-ng~~w~~~~s~K 699 (783)
...+||.|+|||..+|.++|++++..+ |....+.++. +.|||||.|.++++|...++.+ +|..+. .+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~--G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~----g~ 77 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQF--GEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVN----GR 77 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTT--SCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEET----TE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhC--CCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeEC----CC
Confidence 455899999999999999999999876 6677777765 3699999999999999999998 998887 57
Q ss_pred EEEEEeee
Q 003964 700 VASLAYAR 707 (783)
Q Consensus 700 v~~v~yAr 707 (783)
.+.|.|||
T Consensus 78 ~l~v~~ak 85 (85)
T 2ytc_A 78 RLNVKWGR 85 (85)
T ss_dssp ECCEEECC
T ss_pred EEEEEecC
Confidence 88999986
No 312
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.58 E-value=1.2e-07 Score=85.81 Aligned_cols=75 Identities=17% Similarity=0.262 Sum_probs=66.9
Q ss_pred CceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccEE
Q 003964 622 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 701 (783)
Q Consensus 622 ~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv~ 701 (783)
..|||.|+|||..+|.++|++++..+ |.+.-+.++. +.|||||.|.++++|...++.+||+.+. .+.+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~--G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l 76 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRF--GSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFH----HVPL 76 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSS----SSBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEEC----CeEE
Confidence 46899999999999999999999876 7888888773 5689999999999999999999999886 6788
Q ss_pred EEEeeec
Q 003964 702 SLAYARI 708 (783)
Q Consensus 702 ~v~yAri 708 (783)
.|.||+-
T Consensus 77 ~V~~a~~ 83 (111)
T 1whx_A 77 YLEWAPI 83 (111)
T ss_dssp EEEEEET
T ss_pred EEEECCC
Confidence 9999984
No 313
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.58 E-value=8.6e-08 Score=83.33 Aligned_cols=79 Identities=20% Similarity=0.259 Sum_probs=67.3
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
...+||.|+|||..+|.++|++++... |....+ ..++.+.|||||.|.++++|...++.++|+.|. .+.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~--g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 82 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDA--LEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID----GRS 82 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSE--EEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEET----TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC--CcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CeE
Confidence 456899999999999999999999764 333333 457788999999999999999999999999887 678
Q ss_pred EEEEeeeccc
Q 003964 701 ASLAYARIQG 710 (783)
Q Consensus 701 ~~v~yAriQG 710 (783)
+.|.||+-++
T Consensus 83 l~v~~a~~~~ 92 (96)
T 1fjc_A 83 VSLYYTGEKG 92 (96)
T ss_dssp EEEEECSSSC
T ss_pred EEEEEcCCCC
Confidence 9999997654
No 314
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.57 E-value=1.6e-07 Score=86.62 Aligned_cols=74 Identities=18% Similarity=0.141 Sum_probs=60.1
Q ss_pred CCCCEEEEecCCCCCC----------HHHHHHHhhcCCCEEEEec-CCCcccc----ccCHHHHHHHHHHhCCCeeCCcE
Q 003964 192 HPSRTLFVRNINSNVE----------DLELRSLFEQYGDIRTLYT-ACKHRGF----FYDVRAAEAALRALNRSDINGKR 256 (783)
Q Consensus 192 ~psrtLFVGNLp~dvT----------EeeLrelFsqfG~I~~v~~-tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~ 256 (783)
.+++.|.+.|+=..-. ++||++.|++||.|.+|.. ....+|| |.+.++|++|+++|||+.+.||.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 4678999999843221 2588999999999999982 2224566 99999999999999999999999
Q ss_pred eEEEecCCC
Q 003964 257 IKLEPSRPG 265 (783)
Q Consensus 257 IkVe~A~pr 265 (783)
|+|+++...
T Consensus 85 i~v~~~~~~ 93 (114)
T 3s6e_A 85 ITAAYVPLP 93 (114)
T ss_dssp CEEEEECHH
T ss_pred EEEEEEcHH
Confidence 999998643
No 315
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.57 E-value=2.6e-07 Score=79.93 Aligned_cols=76 Identities=20% Similarity=0.274 Sum_probs=67.3
Q ss_pred CCCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCcc
Q 003964 620 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 699 (783)
Q Consensus 620 ~D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~K 699 (783)
....+||.|+|||..+|+++|++++..+ |....+.++.| ||||.|.++++|...++.+||+.+. .+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~----g~ 72 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEY--GPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQ----GK 72 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTT--SCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEET----TE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeC----Cc
Confidence 3567999999999999999999999886 77777777743 9999999999999999999999987 68
Q ss_pred EEEEEeeecc
Q 003964 700 VASLAYARIQ 709 (783)
Q Consensus 700 v~~v~yAriQ 709 (783)
.+.|.||+-+
T Consensus 73 ~l~V~~a~~~ 82 (92)
T 2dgt_A 73 RMHVQLSTSR 82 (92)
T ss_dssp EEEEEESSCC
T ss_pred EEEEEEccCC
Confidence 9999999754
No 316
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.57 E-value=4.1e-08 Score=86.28 Aligned_cols=81 Identities=19% Similarity=0.171 Sum_probs=69.5
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
+..+||.|+|||..+|.++|++++..+ |...- .+.+|..++.+.|||||.|.++++|..+++ ++|..+. .+.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~----g~~ 86 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISEL--FAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVF----GNE 86 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHH--HHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBT----TBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh--CCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEEC----CcE
Confidence 345899999999999999999999887 33333 577888888999999999999999999998 9999887 678
Q ss_pred EEEEeeecc
Q 003964 701 ASLAYARIQ 709 (783)
Q Consensus 701 ~~v~yAriQ 709 (783)
+.|.||+-+
T Consensus 87 l~V~~a~~~ 95 (101)
T 1fj7_A 87 IKLEKPKGR 95 (101)
T ss_dssp CEEECCSCC
T ss_pred EEEEEcCCC
Confidence 899998743
No 317
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.55 E-value=1.4e-07 Score=89.47 Aligned_cols=82 Identities=6% Similarity=0.026 Sum_probs=71.9
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCc---cceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCC
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGT---YDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNS 697 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~---YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s 697 (783)
+..+||.|+|||...|.++|++++... |. ..-+.|+.|.. +.+.|||||.|.++++|.+.++ ++|+.+.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~--G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~---- 113 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDC--TIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMG---- 113 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTC--CCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESS----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh--CCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEEC----
Confidence 455899999999999999999999876 55 77899999987 8899999999999999999999 9998776
Q ss_pred ccEEEEEeeeccc
Q 003964 698 EKVASLAYARIQG 710 (783)
Q Consensus 698 ~Kv~~v~yAriQG 710 (783)
.+.+.|.+|.-.-
T Consensus 114 gr~i~V~~a~~~e 126 (136)
T 2hgl_A 114 HRYIEVFKSHRTE 126 (136)
T ss_dssp SSEEEEEECCHHH
T ss_pred CEEEEEEECChHH
Confidence 6788999987443
No 318
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.54 E-value=2.2e-07 Score=81.20 Aligned_cols=79 Identities=13% Similarity=0.139 Sum_probs=67.0
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
+..+||.|+|||..+|+++|++++.++ |...-+.++.+ .|||||.|.+.++|...++.+||+.+.. ..+.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~--~g~~ 84 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRF--GSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGG--PDRR 84 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTT--SCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSS--SSCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCC--CCcE
Confidence 445899999999999999999999877 67777766644 6899999999999999999999998752 2577
Q ss_pred EEEEeeecc
Q 003964 701 ASLAYARIQ 709 (783)
Q Consensus 701 ~~v~yAriQ 709 (783)
+.|.||+-+
T Consensus 85 l~V~~a~~~ 93 (97)
T 1why_A 85 LRVDFAKSG 93 (97)
T ss_dssp CEEEECCCC
T ss_pred EEEEECCCC
Confidence 899999854
No 319
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.54 E-value=1.6e-07 Score=83.73 Aligned_cols=79 Identities=15% Similarity=0.317 Sum_probs=69.5
Q ss_pred CCceeEEeecCCCcc------CHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccC
Q 003964 621 DTRTTLMIKNIPNKY------TSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEK 694 (783)
Q Consensus 621 D~RTTvMIRNIPNk~------tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~ 694 (783)
+..+||.|.|||... |.++|.+++..+ |...-++++ -.++.+.|||||.|.++++|...++.+||+.|.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~--G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~- 87 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF--GKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD- 87 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGG--SCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS-
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcC--CCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC-
Confidence 346899999999999 789999999876 778888888 367788999999999999999999999999887
Q ss_pred CCCcc-EEEEEeee
Q 003964 695 FNSEK-VASLAYAR 707 (783)
Q Consensus 695 ~~s~K-v~~v~yAr 707 (783)
.+ .+.|.||+
T Consensus 88 ---g~~~l~V~~a~ 98 (105)
T 2nlw_A 88 ---KQHTFRVNLFT 98 (105)
T ss_dssp ---TTCEEEEECSC
T ss_pred ---CCceEEEEEcc
Confidence 56 88999986
No 320
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.54 E-value=7.6e-08 Score=90.07 Aligned_cols=84 Identities=18% Similarity=0.175 Sum_probs=69.8
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceE--Eeccc---cccccceeEEEEeccChhHHHHHHHHHcCccccCC
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFL--YLPID---FKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKF 695 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFl--YLPiD---f~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~ 695 (783)
+..+||.|+|||..+|.++|.+++..+ |....+ .+++| .+++.+.|||||.|.++++|...++.+||..+.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~--G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~-- 118 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRY--VDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF-- 118 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGG--CCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEET--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh--CCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC--
Confidence 556899999999999999999999887 444332 33444 257888999999999999999999999999986
Q ss_pred CCccEEEEEeeeccc
Q 003964 696 NSEKVASLAYARIQG 710 (783)
Q Consensus 696 ~s~Kv~~v~yAriQG 710 (783)
.+.+.|.||+-+.
T Consensus 119 --g~~l~V~~a~~~~ 131 (143)
T 3egn_A 119 --GKPMVVQFARSAR 131 (143)
T ss_dssp --TEECEEEECCCSC
T ss_pred --CcEEEEEECCCCC
Confidence 6889999997543
No 321
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.53 E-value=1.4e-07 Score=84.96 Aligned_cols=83 Identities=12% Similarity=0.106 Sum_probs=70.6
Q ss_pred CCCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCcc
Q 003964 620 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 699 (783)
Q Consensus 620 ~D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~K 699 (783)
.+..+||.|+|||..+|.++|.+++..+ |...-+.++.|..++.+.|||||.|.+.++|.+.++.. |..+. .+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~--G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~----g~ 94 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQF--GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELD----SK 94 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTT--SCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEET----TE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcc--CCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCC----CE
Confidence 4566899999999999999999999876 88899999999999999999999999999999999875 46555 57
Q ss_pred EEEEEeeecc
Q 003964 700 VASLAYARIQ 709 (783)
Q Consensus 700 v~~v~yAriQ 709 (783)
.+.|.||+-+
T Consensus 95 ~l~V~~a~~~ 104 (109)
T 2rs2_A 95 TIDPKVAFPR 104 (109)
T ss_dssp EEEEEECCCC
T ss_pred EEEEEEccCC
Confidence 8889998744
No 322
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=97.92 E-value=1.2e-08 Score=92.35 Aligned_cols=83 Identities=14% Similarity=0.219 Sum_probs=73.4
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccce--------EEeccccccccceeEEEEeccChhHHHHHHHHHcCccc
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDF--------LYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKW 692 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDF--------lYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w 692 (783)
...+||.|+|||..+|.++|++++..+ |...- +.++.|..++.+.|||||.|.++++|...++.+||+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQI--GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 456899999999999999999999876 44444 88999988999999999999999999999999999988
Q ss_pred cCCCCccEEEEEeeecc
Q 003964 693 EKFNSEKVASLAYARIQ 709 (783)
Q Consensus 693 ~~~~s~Kv~~v~yAriQ 709 (783)
. .+.+.|.||+-+
T Consensus 83 ~----g~~l~V~~a~~~ 95 (116)
T 2lcw_A 83 S----GNPIKVSFATRR 95 (116)
Confidence 7 678899998754
No 323
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.51 E-value=1.7e-07 Score=83.43 Aligned_cols=80 Identities=10% Similarity=0.133 Sum_probs=68.5
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccce-EEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCcc
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDF-LYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 699 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDF-lYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~K 699 (783)
+..+||.|+|||...|.++|++++... |...- +.|+.| .++.+.|||||.|.++++|.+.++. +|+.+. .+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~--G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~----gr 84 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGL--EIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIG----HR 84 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTC--CEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSS----SS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhC----Cc
Confidence 456899999999999999999999765 66655 889999 8899999999999999999999998 887665 45
Q ss_pred EEEEEeeec
Q 003964 700 VASLAYARI 708 (783)
Q Consensus 700 v~~v~yAri 708 (783)
.+.|.+|.-
T Consensus 85 ~i~v~~~~~ 93 (104)
T 1wg5_A 85 YIEIFKSSR 93 (104)
T ss_dssp CCEEEEECT
T ss_pred EEEEEECCH
Confidence 677888763
No 324
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.50 E-value=3.7e-07 Score=80.50 Aligned_cols=76 Identities=16% Similarity=0.195 Sum_probs=66.6
Q ss_pred CCceeEEeecCCC-ccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCcc
Q 003964 621 DTRTTLMIKNIPN-KYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 699 (783)
Q Consensus 621 D~RTTvMIRNIPN-k~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~K 699 (783)
...+||.|+|||. .+|.++|.+++..+ |....+.++ .|||||.|.+.++|...++.++|..+. .+
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~--G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~ 85 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPY--GHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNF----GK 85 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGG--SCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEET----TE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhc--CCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEEC----CE
Confidence 4568999999998 99999999999886 677777663 699999999999999999999999886 67
Q ss_pred EEEEEeeeccc
Q 003964 700 VASLAYARIQG 710 (783)
Q Consensus 700 v~~v~yAriQG 710 (783)
.+.|.||+-++
T Consensus 86 ~l~V~~a~~~~ 96 (97)
T 2xnq_A 86 KLILEVSSSNA 96 (97)
T ss_dssp ECEEEECCCCC
T ss_pred EEEEEecCCCC
Confidence 88999998654
No 325
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=2.3e-07 Score=81.24 Aligned_cols=78 Identities=19% Similarity=0.202 Sum_probs=64.5
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
+..+||.|+|||..+|.++|++++.++ |... +-+. +..+.|||||.|.++++|...++.+||+.+. .+.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~--G~v~-~~~~----~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 85 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALREL--GSVP-LRLT----WQGPRRRAFLHYPDSAAAQQAVSCLQGLRLG----TDT 85 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHT--TCCC-SEEE----EETTTTEEEEECSSHHHHHHHHHHHTTCCSS----SSC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhc--CCEE-EEEE----cCCCCcEEEEEECCHHHHHHHHHHhCCCEEC----CcE
Confidence 345899999999999999999999887 4433 2222 3467899999999999999999999999887 577
Q ss_pred EEEEeeecc
Q 003964 701 ASLAYARIQ 709 (783)
Q Consensus 701 ~~v~yAriQ 709 (783)
+.|.||+-+
T Consensus 86 l~V~~a~~~ 94 (97)
T 2e5j_A 86 LRVALARQQ 94 (97)
T ss_dssp CEEEECCCC
T ss_pred EEEEEcCCC
Confidence 899999755
No 326
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.50 E-value=2.8e-07 Score=86.31 Aligned_cols=77 Identities=16% Similarity=0.170 Sum_probs=67.5
Q ss_pred CCCCEEEEecCCCC-CCHHHHHHHhhcCCCEEEEe-cCCCcccc--ccC-HHHHHHHHHHhC--CCeeCCcEeEEEecCC
Q 003964 192 HPSRTLFVRNINSN-VEDLELRSLFEQYGDIRTLY-TACKHRGF--FYD-VRAAEAALRALN--RSDINGKRIKLEPSRP 264 (783)
Q Consensus 192 ~psrtLFVGNLp~d-vTEeeLrelFsqfG~I~~v~-~tgKsrGF--F~d-~edAekAI~aLN--G~~I~Gr~IkVe~A~p 264 (783)
++++.|||+||+.+ +++++|+++|++||+|..|. ..+...|| |.+ .++|++|++.|| +.+|.|..+++++...
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~G 95 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEG 95 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECCH
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECCC
Confidence 45789999999999 99999999999999999998 56677899 999 899999999995 7789999999988775
Q ss_pred Cccc
Q 003964 265 GGAR 268 (783)
Q Consensus 265 r~~r 268 (783)
...+
T Consensus 96 eeE~ 99 (121)
T 1owx_A 96 EVEK 99 (121)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 327
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.48 E-value=1.5e-07 Score=84.32 Aligned_cols=91 Identities=14% Similarity=0.090 Sum_probs=74.5
Q ss_pred CCCceeEEeecCCCccCHHHHHHHHhhhC-CCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCc
Q 003964 620 EDTRTTLMIKNIPNKYTSKMLLAAIDENH-RGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSE 698 (783)
Q Consensus 620 ~D~RTTvMIRNIPNk~tq~~L~~~ide~~-~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~ 698 (783)
.+..+||.|+|||...|.++|++++.... .+...-+.|+.|.. +.+.|||||.|.+.++|...++ ++|+.+. .
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~----g 81 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMG----Q 81 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSS----S
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeC----C
Confidence 46779999999999999999999998752 23378899999977 8889999999999999999999 8987665 5
Q ss_pred cEEEEEeeecccHHHHHH
Q 003964 699 KVASLAYARIQGQAALVT 716 (783)
Q Consensus 699 Kv~~v~yAriQGk~ali~ 716 (783)
+.+.|.+|.-+-....++
T Consensus 82 r~i~V~~a~~~~~~~~~~ 99 (107)
T 2lmi_A 82 RYVEVYEINNEDVDALMK 99 (107)
T ss_dssp SCCCCEECCHHHHHHHHH
T ss_pred eEEEEEECCHHHHHHHHH
Confidence 678889987544444444
No 328
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.48 E-value=7.2e-08 Score=85.17 Aligned_cols=79 Identities=13% Similarity=0.182 Sum_probs=68.9
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEecccc-ccccceeEEEEeccChhHHHHHHHHHcCccccCCCCcc
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDF-KNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 699 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf-~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~K 699 (783)
+.-+||.|+|||..+|.++|++++..+ | ..-+.++.|- .++.+.|||||.|.+.++|.+.+ .++|..+. .+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~----g~ 88 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGL--N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG----NR 88 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSS--C-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBT----TB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc--C-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEEC----Ce
Confidence 556899999999999999999999876 6 8888999988 58889999999999999999999 99999886 56
Q ss_pred EEEEEeee
Q 003964 700 VASLAYAR 707 (783)
Q Consensus 700 v~~v~yAr 707 (783)
.+.|.||+
T Consensus 89 ~l~V~~a~ 96 (100)
T 2j76_E 89 RIRVDVAD 96 (100)
T ss_dssp CCCCEECC
T ss_pred EEEEEecc
Confidence 77888886
No 329
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.48 E-value=2.8e-07 Score=85.40 Aligned_cols=79 Identities=20% Similarity=0.366 Sum_probs=68.9
Q ss_pred CCceeEEeec--CCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccc-cCCCC
Q 003964 621 DTRTTLMIKN--IPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKW-EKFNS 697 (783)
Q Consensus 621 D~RTTvMIRN--IPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w-~~~~s 697 (783)
+.-++|.|+| ||..+|.++|.+++.++ |...-++++.+ .|||||.|.++++|.+.++.+||+.+ ..+..
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~f--G~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKC--GLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHH--SCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhc--CCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 3446799966 99999999999999998 68888998854 69999999999999999999999998 55555
Q ss_pred ccEEEEEeee
Q 003964 698 EKVASLAYAR 707 (783)
Q Consensus 698 ~Kv~~v~yAr 707 (783)
.+++.|.||+
T Consensus 95 g~~l~v~~a~ 104 (114)
T 2cq2_A 95 KITLYLNFVE 104 (114)
T ss_dssp EEECEEEEES
T ss_pred CcEEEEEecc
Confidence 7889999986
No 330
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.47 E-value=2.8e-07 Score=82.46 Aligned_cols=72 Identities=22% Similarity=0.313 Sum_probs=60.1
Q ss_pred CCCCEEEEecCCC----CCCH----HHHHHHhhcCCCEEEEecCCCcccc--ccCHHHHHHHHHHhCCCeeCCcEeEEEe
Q 003964 192 HPSRTLFVRNINS----NVED----LELRSLFEQYGDIRTLYTACKHRGF--FYDVRAAEAALRALNRSDINGKRIKLEP 261 (783)
Q Consensus 192 ~psrtLFVGNLp~----dvTE----eeLrelFsqfG~I~~v~~tgKsrGF--F~d~edAekAI~aLNG~~I~Gr~IkVe~ 261 (783)
+|..||+|.-.+. +.-+ .+|.+.|++||+|..++... .++| |.+.++|.+||+ |||.++.||.|+|++
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~-d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~l 82 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE-DKMWVTFLEGSSALNVLS-LNGKELLNRTITIAL 82 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS-SSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec-CCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEe
Confidence 4567999988762 3334 67899999999999998322 3488 999999999999 999999999999999
Q ss_pred cCCC
Q 003964 262 SRPG 265 (783)
Q Consensus 262 A~pr 265 (783)
++|.
T Consensus 83 kt~d 86 (91)
T 2dnr_A 83 KSPS 86 (91)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9875
No 331
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.47 E-value=5.1e-07 Score=80.75 Aligned_cols=73 Identities=15% Similarity=0.183 Sum_probs=64.5
Q ss_pred CceeEEeecCCCc-cCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 622 TRTTLMIKNIPNK-YTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 622 ~RTTvMIRNIPNk-~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
..+||.|+|||.. +|+++|++++..+ |...-+.+ +.|||||.|.+.++|..+++.++|+.+. .+.
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~--G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 91 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKY--GRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLA----GQT 91 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGG--SCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEET----TEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhC--CCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEEC----CeE
Confidence 3489999999999 9999999999886 66666666 5799999999999999999999999887 678
Q ss_pred EEEEeeec
Q 003964 701 ASLAYARI 708 (783)
Q Consensus 701 ~~v~yAri 708 (783)
+.|.||+-
T Consensus 92 l~V~~a~~ 99 (110)
T 1wf1_A 92 LDINMAGE 99 (110)
T ss_dssp CCEEESCC
T ss_pred EEEEECCC
Confidence 89999874
No 332
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.46 E-value=4.4e-07 Score=83.13 Aligned_cols=77 Identities=17% Similarity=0.194 Sum_probs=67.7
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCC-ccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCcc
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRG-TYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 699 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g-~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~K 699 (783)
..+++|.|+|||...|+++|++++.+. | ...++.++.+ .+.|||||.|.+.++|.+.++.+||+.+. .+
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~--G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~----Gr 95 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLAREN--SLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFR----GS 95 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHH--TCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEET----TE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHh--CCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEEC----Ce
Confidence 456899999999999999999999888 6 6777777543 36899999999999999999999999887 67
Q ss_pred EEEEEeee
Q 003964 700 VASLAYAR 707 (783)
Q Consensus 700 v~~v~yAr 707 (783)
.+.|.+|+
T Consensus 96 ~i~V~~a~ 103 (111)
T 2jvr_A 96 VITVERDD 103 (111)
T ss_dssp EEEEEESC
T ss_pred EEEEEECC
Confidence 88999986
No 333
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.45 E-value=2.7e-07 Score=81.15 Aligned_cols=80 Identities=14% Similarity=0.172 Sum_probs=69.5
Q ss_pred CCCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCcc
Q 003964 620 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 699 (783)
Q Consensus 620 ~D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~K 699 (783)
....+||.|+|||..+|+++|.+++..+ |...-+.++.|- ++.+.|||||.|.+.++|...++ +|..+. .+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~----g~ 76 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARY--GSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFH----GK 76 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGG--SCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEET----TE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC--CCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeEC----CE
Confidence 3456899999999999999999999877 788899999997 89999999999999999999998 776665 56
Q ss_pred EEEEEeeec
Q 003964 700 VASLAYARI 708 (783)
Q Consensus 700 v~~v~yAri 708 (783)
.+.|.+|.-
T Consensus 77 ~l~v~~a~~ 85 (102)
T 2xs2_A 77 KLKLGPAIR 85 (102)
T ss_dssp ECEEEEEEE
T ss_pred EEEEEECCc
Confidence 777888763
No 334
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.45 E-value=5.5e-07 Score=77.57 Aligned_cols=76 Identities=17% Similarity=0.207 Sum_probs=66.8
Q ss_pred CCCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCcc
Q 003964 620 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 699 (783)
Q Consensus 620 ~D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~K 699 (783)
....+||.|+|||..+|+++|++++..+ |....+.++. |||||.|.++++|...++.++|+.+. .+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~----g~ 71 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERR--GRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVK----GK 71 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHH--SCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEET----TE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcC--CCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEEC----Cc
Confidence 3566899999999999999999999887 6677777763 39999999999999999999999887 68
Q ss_pred EEEEEeeecc
Q 003964 700 VASLAYARIQ 709 (783)
Q Consensus 700 v~~v~yAriQ 709 (783)
.+.|.||+-+
T Consensus 72 ~l~v~~a~~~ 81 (90)
T 2dnp_A 72 RINVELSTKG 81 (90)
T ss_dssp ECEEEESCCC
T ss_pred EEEEEECCCC
Confidence 8999999754
No 335
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.43 E-value=2.6e-07 Score=84.35 Aligned_cols=79 Identities=11% Similarity=0.113 Sum_probs=68.2
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcC--ccccCCCCc
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNG--KKWEKFNSE 698 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng--~~w~~~~s~ 698 (783)
...+||.|+|||.++|+++|++++.++ |++.-+.+..| .|||||.|.+.++|...++.+++ ..+. .
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~f--G~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~----G 81 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPF--GKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLR----G 81 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHH--CCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEET----T
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceEC----C
Confidence 456999999999999999999999988 88888888876 59999999999999999999976 4444 5
Q ss_pred cEEEEEeeecccH
Q 003964 699 KVASLAYARIQGQ 711 (783)
Q Consensus 699 Kv~~v~yAriQGk 711 (783)
+.+.|.||+-|..
T Consensus 82 r~l~V~~A~~~~~ 94 (105)
T 1sjq_A 82 QPIYIQFSNHKEL 94 (105)
T ss_dssp EECCBCCCSSSSC
T ss_pred EEEEEEEcCCCCC
Confidence 7889999986544
No 336
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.43 E-value=4.1e-07 Score=85.13 Aligned_cols=83 Identities=18% Similarity=0.257 Sum_probs=67.2
Q ss_pred CceeEEeecCCCccCHHHHHHHHhhhC--CCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCcc
Q 003964 622 TRTTLMIKNIPNKYTSKMLLAAIDENH--RGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 699 (783)
Q Consensus 622 ~RTTvMIRNIPNk~tq~~L~~~ide~~--~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~K 699 (783)
..+||.|+|||.+++.++|++.|.+.| .|...-++++ +++.+.|||||.|.++++|...++.+||+.+. .+
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~----gr 100 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQ----GN 100 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCT----TS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeC----CC
Confidence 457999999999999999886554432 2666556654 35667899999999999999999999999876 57
Q ss_pred EEEEEeeecccH
Q 003964 700 VASLAYARIQGQ 711 (783)
Q Consensus 700 v~~v~yAriQGk 711 (783)
.+.|.||+-+..
T Consensus 101 ~l~V~~a~~~~~ 112 (127)
T 2a3j_A 101 PLVITFSETPQS 112 (127)
T ss_dssp CCEEEECCCCCH
T ss_pred EEEEEEccCcch
Confidence 889999996654
No 337
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.42 E-value=4.6e-07 Score=85.39 Aligned_cols=79 Identities=13% Similarity=0.190 Sum_probs=70.3
Q ss_pred CCCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCcc
Q 003964 620 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 699 (783)
Q Consensus 620 ~D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~K 699 (783)
....+||.|+|||..+|.++|.+++..+ |....+.++.| +.|||||.|.+.++|...++.+||+.+. .+
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~--G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~ 138 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYY--GPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLC----GC 138 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHH--SCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSS----SS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhh--CCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEEC----Ce
Confidence 3567999999999999999999999887 78888888887 5799999999999999999999999875 67
Q ss_pred EEEEEeeecc
Q 003964 700 VASLAYARIQ 709 (783)
Q Consensus 700 v~~v~yAriQ 709 (783)
.+.|.||+-+
T Consensus 139 ~l~v~~a~~~ 148 (150)
T 2i2y_A 139 RVRVELSNGE 148 (150)
T ss_dssp CCEEEECCCC
T ss_pred EEEEEEcCCC
Confidence 8899998743
No 338
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.42 E-value=5.1e-07 Score=78.98 Aligned_cols=78 Identities=15% Similarity=0.188 Sum_probs=65.9
Q ss_pred CCCceeEEeecCCC-ccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCc
Q 003964 620 EDTRTTLMIKNIPN-KYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSE 698 (783)
Q Consensus 620 ~D~RTTvMIRNIPN-k~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~ 698 (783)
.+..+||.|+|||. .+|+++|.+++..+ |...-+.++ .|||||.|.++++|...++.++|..+. .
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~--G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~----g 72 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPY--GHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNF----G 72 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTT--CCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCB----T
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhc--CCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeC----C
Confidence 35678999999998 99999999999876 677777774 689999999999999999999999876 5
Q ss_pred cEEEEEeeecccH
Q 003964 699 KVASLAYARIQGQ 711 (783)
Q Consensus 699 Kv~~v~yAriQGk 711 (783)
+.+.|.||+-+.+
T Consensus 73 ~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 73 KKLILEVSSSNAR 85 (96)
T ss_dssp TTBCEEEEECCCC
T ss_pred cEEEEEEcCcCCC
Confidence 6788899875543
No 339
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.41 E-value=3.8e-07 Score=81.98 Aligned_cols=78 Identities=18% Similarity=0.244 Sum_probs=69.3
Q ss_pred CceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccEE
Q 003964 622 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 701 (783)
Q Consensus 622 ~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv~ 701 (783)
..+||-|+|||...|.++|.+++..+ |...-+.|+.|.. +.+.|||||.|.++++|..+++ .+|..+. .+.+
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~--G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~----gr~l 81 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDK--GQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYK----ETDL 81 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTS--SCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCT----TTTC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhc--CCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEEC----CEEE
Confidence 34789999999999999999999876 8899999999987 8889999999999999999999 8888776 5677
Q ss_pred EEEeee
Q 003964 702 SLAYAR 707 (783)
Q Consensus 702 ~v~yAr 707 (783)
.|.||+
T Consensus 82 ~V~~~~ 87 (103)
T 1s79_A 82 LILFKD 87 (103)
T ss_dssp EEEEHH
T ss_pred EEEEch
Confidence 888865
No 340
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.41 E-value=1.8e-07 Score=85.04 Aligned_cols=64 Identities=13% Similarity=0.236 Sum_probs=57.6
Q ss_pred CceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccC
Q 003964 622 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEK 694 (783)
Q Consensus 622 ~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~ 694 (783)
..+||.|.|||..+|+++|++++..+ |.+..+.++.| |||||.|.+.++|...++.+||+.+..
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~--G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g 78 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREA--GDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRS 78 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGG--SCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45899999999999999999999877 78888888877 999999999999999999999998873
No 341
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.38 E-value=5.8e-07 Score=100.07 Aligned_cols=83 Identities=20% Similarity=0.251 Sum_probs=76.2
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
+.-+||.|.|||..+|.++|.++|..+ |.+..+.|+.|-.++.+.|||||.|.++++|..+++.+||+.|. .+.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~--G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~----gr~ 173 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVY--GPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKID----GRR 173 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHc--CCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEEC----CEE
Confidence 456899999999999999999999876 88889999999989999999999999999999999999999886 689
Q ss_pred EEEEeeecc
Q 003964 701 ASLAYARIQ 709 (783)
Q Consensus 701 ~~v~yAriQ 709 (783)
|.|.||+-+
T Consensus 174 i~V~~a~~~ 182 (437)
T 3pgw_S 174 VLVDVERGR 182 (437)
T ss_pred EEEEEeCCC
Confidence 999999843
No 342
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.38 E-value=6.4e-07 Score=80.61 Aligned_cols=78 Identities=13% Similarity=0.213 Sum_probs=64.9
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCc--cccCCCCc
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGK--KWEKFNSE 698 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~--~w~~~~s~ 698 (783)
...+||.|+|||.++|.++|++++..+ |+..-+.++.| .|||||.|.+.++|...++.+++. .+. .
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~f--G~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~----G 80 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPF--GKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLR----N 80 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTT--SCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEET----T
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceEC----C
Confidence 345799999999999999999999776 77777777655 699999999999999999988653 343 6
Q ss_pred cEEEEEeeeccc
Q 003964 699 KVASLAYARIQG 710 (783)
Q Consensus 699 Kv~~v~yAriQG 710 (783)
+.+.|.||+-|-
T Consensus 81 r~l~V~~a~~~~ 92 (101)
T 2cq1_A 81 QPIYIQYSNHKE 92 (101)
T ss_dssp EECEEEECSCSS
T ss_pred cEEEEEEcCccc
Confidence 889999998554
No 343
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.38 E-value=5.3e-07 Score=81.45 Aligned_cols=78 Identities=9% Similarity=0.051 Sum_probs=64.6
Q ss_pred ceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccEEE
Q 003964 623 RTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVAS 702 (783)
Q Consensus 623 RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv~~ 702 (783)
.+||.|+|||..+|+++|++++..+ |+..-+.+..+ .|||||.|.+.++|...++.++++... -..+.+.
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~f--G~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~--i~Gr~l~ 84 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLVEALEKF--GTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVY--IAGQQAF 84 (104)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHTTT--SCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCB--SSSSBCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCce--ECCEEEE
Confidence 4799999999999999999999877 77777777643 699999999999999999999876422 1257889
Q ss_pred EEeeeccc
Q 003964 703 LAYARIQG 710 (783)
Q Consensus 703 v~yAriQG 710 (783)
|.||+-|.
T Consensus 85 V~~a~~~~ 92 (104)
T 1wex_A 85 FNYSTSKR 92 (104)
T ss_dssp EEECSSSS
T ss_pred EEEccCcc
Confidence 99998543
No 344
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.36 E-value=5.7e-07 Score=80.39 Aligned_cols=79 Identities=9% Similarity=0.099 Sum_probs=65.8
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
...+||.|+|||...|.++|++++.... .. -+.|+.|- ++.+.|||||.|.++++|.+.++ .+++.+. .+.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G--~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~----gr~ 83 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLN--PM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQ----HRY 83 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCC--CS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSS----SSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC--ce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeEC----CcE
Confidence 4568999999999999999999997763 33 78888896 88999999999999999999995 6887665 456
Q ss_pred EEEEeeec
Q 003964 701 ASLAYARI 708 (783)
Q Consensus 701 ~~v~yAri 708 (783)
+.|.+|.-
T Consensus 84 i~V~~~~~ 91 (102)
T 1wez_A 84 VELFLNST 91 (102)
T ss_dssp CEEEEECC
T ss_pred EEEEECCC
Confidence 67777764
No 345
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=1.3e-06 Score=75.81 Aligned_cols=77 Identities=18% Similarity=0.211 Sum_probs=67.7
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceE-EeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCcc
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFL-YLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 699 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFl-YLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~K 699 (783)
...+||.|+|||..+|.++|++++..+ |....+ +++.|..++. |||.|.+.++|...++.+||+.+. .+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~----g~ 82 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQY--GVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLE----NF 82 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHH--SCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCS----SC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhc--CCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEEC----Cc
Confidence 346899999999999999999999887 778888 7888866544 999999999999999999999886 67
Q ss_pred EEEEEeee
Q 003964 700 VASLAYAR 707 (783)
Q Consensus 700 v~~v~yAr 707 (783)
.+.|.||+
T Consensus 83 ~l~V~~a~ 90 (96)
T 2e44_A 83 TLKVAYIP 90 (96)
T ss_dssp BCEEEECC
T ss_pred EEEEEEcC
Confidence 78999986
No 346
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.34 E-value=6.9e-07 Score=82.36 Aligned_cols=87 Identities=15% Similarity=0.208 Sum_probs=67.9
Q ss_pred cCchhhhcCCCCceeEEeecCCCc-cCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcC
Q 003964 611 LDLDKIISGEDTRTTLMIKNIPNK-YTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNG 689 (783)
Q Consensus 611 ~d~~~I~~g~D~RTTvMIRNIPNk-~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng 689 (783)
.++.+.+.-...-+||.|+|||.. +|.++|++++..+ |++.-+.|.. +.|||||.|.+.++|...++.+++
T Consensus 13 ~~~k~~~~~~~p~~~l~V~NLp~~~~te~~L~~lF~~f--G~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~ 84 (112)
T 1x4f_A 13 KPDQKFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPY--GKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLK 84 (112)
T ss_dssp CCCCCCCCSSCCCCEEEEESCCCSSCCSHHHHTTTTTT--SCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHH
T ss_pred ChhhhccccCCCCCEEEEeCCCCccCCHHHHHHHHHhc--CCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhcc
Confidence 444444444556789999999997 9999999998777 7888888752 369999999999999999999987
Q ss_pred ccccCCCCccEEEEEeee
Q 003964 690 KKWEKFNSEKVASLAYAR 707 (783)
Q Consensus 690 ~~w~~~~s~Kv~~v~yAr 707 (783)
.... + ..+.+.|.||+
T Consensus 85 ~~~~-l-~Gr~l~V~~a~ 100 (112)
T 1x4f_A 85 KALW-F-QGRCVKVDLSE 100 (112)
T ss_dssp SCCC-S-SSSCCEEEEEC
T ss_pred CCce-E-CCEEEEEEECc
Confidence 5422 1 25778899986
No 347
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.32 E-value=1.1e-06 Score=79.99 Aligned_cols=77 Identities=13% Similarity=0.092 Sum_probs=67.0
Q ss_pred CceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccEE
Q 003964 622 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 701 (783)
Q Consensus 622 ~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv~ 701 (783)
..+||.|+|||...|.++|++++... +..-+.|+.|-. +...|||||.|.++++|.+.+ .++|+.+. .+.+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~---~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~----gr~i 85 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL---RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMI----QRYV 85 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS---CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEET----TEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC---CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeEC----CeEE
Confidence 34799999999999999999999775 568899999964 778999999999999999999 68998776 5678
Q ss_pred EEEeee
Q 003964 702 SLAYAR 707 (783)
Q Consensus 702 ~v~yAr 707 (783)
.|..|.
T Consensus 86 ~V~~a~ 91 (109)
T 2dnn_A 86 EVSPAT 91 (109)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 888775
No 348
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.31 E-value=8e-07 Score=75.21 Aligned_cols=66 Identities=18% Similarity=0.388 Sum_probs=59.0
Q ss_pred eeEEeecCCCcc------CHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCcccc
Q 003964 624 TTLMIKNIPNKY------TSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWE 693 (783)
Q Consensus 624 TTvMIRNIPNk~------tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~ 693 (783)
|||.|+|||... |+++|.+++..+ |...-+.++ -.++.+.|||||.|.++++|...++.+||+.+.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~--G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 73 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKF--GKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 73 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTT--CCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhc--CCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccC
Confidence 799999999999 679999999776 778788877 367888999999999999999999999999886
No 349
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.30 E-value=6.7e-07 Score=80.91 Aligned_cols=76 Identities=16% Similarity=0.170 Sum_probs=65.9
Q ss_pred CCceeEEeecCCC-ccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCcc--ccCCCC
Q 003964 621 DTRTTLMIKNIPN-KYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKK--WEKFNS 697 (783)
Q Consensus 621 D~RTTvMIRNIPN-k~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~--w~~~~s 697 (783)
+..+||-|+|||. .+|+++|++++.++ |+..-++|..| .|||||.|.+.++|...++.+++.. +.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~f--G~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~---- 80 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPF--GVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVF---- 80 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGG--SCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEET----
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhc--CCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceEC----
Confidence 3568999999999 99999999999887 88888888765 3899999999999999999999864 43
Q ss_pred ccEEEEEeeec
Q 003964 698 EKVASLAYARI 708 (783)
Q Consensus 698 ~Kv~~v~yAri 708 (783)
.+.+.|.||+-
T Consensus 81 Gr~l~V~~a~~ 91 (102)
T 1x4d_A 81 GKPVRVHLSQK 91 (102)
T ss_dssp TEECEEEEECC
T ss_pred CcEEEEEECCC
Confidence 68889999973
No 350
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.29 E-value=1.6e-06 Score=80.71 Aligned_cols=77 Identities=12% Similarity=0.131 Sum_probs=65.5
Q ss_pred CceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCc--cccCCCCcc
Q 003964 622 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGK--KWEKFNSEK 699 (783)
Q Consensus 622 ~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~--~w~~~~s~K 699 (783)
..+||.|+|||..+|.++|++++..+ |++.-+.++.| .|||||.|.+.++|...++.+++. .+. .+
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~f--G~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~----Gr 97 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPF--GKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLR----GQ 97 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTT--SCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBT----TB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceEC----Ce
Confidence 34799999999999999999999877 78888888765 599999999999999999999864 333 57
Q ss_pred EEEEEeeeccc
Q 003964 700 VASLAYARIQG 710 (783)
Q Consensus 700 v~~v~yAriQG 710 (783)
.+.|.||+-|.
T Consensus 98 ~l~V~~a~~k~ 108 (119)
T 2ad9_A 98 PIYIQFSNHKE 108 (119)
T ss_dssp CCEEEECSSSS
T ss_pred EEEEEEccCCC
Confidence 88999998554
No 351
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=2.1e-06 Score=77.55 Aligned_cols=70 Identities=17% Similarity=0.298 Sum_probs=61.2
Q ss_pred CCCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEecccccc---ccceeEEEEeccChhHHHHHHHHH---cCccc
Q 003964 620 EDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKN---KCNVGYAFINMVSPSHIISFYEAF---NGKKW 692 (783)
Q Consensus 620 ~D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~---~~N~GYAFINf~~~~~~~~f~~~f---ng~~w 692 (783)
....+||-|+|||..+|.++|++++.++ |... +.++.|-.+ +.+.|||||.|.++++|.+.++.+ +|+.+
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~--G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~ 80 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRF--GPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLY 80 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTT--CCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhc--CCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEE
Confidence 3456889999999999999999999876 7777 889999887 588999999999999999999998 66644
No 352
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.26 E-value=1.9e-06 Score=74.99 Aligned_cols=76 Identities=11% Similarity=0.151 Sum_probs=61.5
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
..-+||.|.|||..+|+++|.+++..+ |...-+.++.| +.|||||.|.++++|. +++|..+. -..+.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~--G~i~~v~i~~~-----srGfaFV~F~~~~~A~----~~~~~~~~--~~g~~ 75 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQY--GEVVDVFIPKP-----FRAFAFVTFADDKVAQ----SLCGEDLI--IKGIS 75 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEECCSS-----CCSEEEEEESCHHHHH----HHTTCEEE--ETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcc--CCEEEEEEeeC-----CCCEEEEEECCHHHHH----HHcCCCcc--cCCEE
Confidence 345899999999999999999999876 88888999886 6799999999999987 46777554 23577
Q ss_pred EEEEeeecc
Q 003964 701 ASLAYARIQ 709 (783)
Q Consensus 701 ~~v~yAriQ 709 (783)
+.|.+|+-+
T Consensus 76 v~v~~a~~k 84 (89)
T 3d2w_A 76 VHISNAEPK 84 (89)
T ss_dssp EEEEECC--
T ss_pred EEEEEcCCC
Confidence 889998744
No 353
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.21 E-value=3e-06 Score=76.74 Aligned_cols=79 Identities=11% Similarity=0.096 Sum_probs=64.9
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
....||.|||||...|+++|++++..+ |+..-+.+.. ..|||||.|.+.++|...++.++|.... -..|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~f--G~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~--i~Gr~ 88 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEF--GPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIY--IAGHP 88 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEE--ETTEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcc--CCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCce--eCCcE
Confidence 345789999999999999999999887 7777666653 3599999999999999999999987521 12688
Q ss_pred EEEEeeecc
Q 003964 701 ASLAYARIQ 709 (783)
Q Consensus 701 ~~v~yAriQ 709 (783)
+.|.||+=|
T Consensus 89 i~V~~S~~k 97 (100)
T 3r27_A 89 AFVNYSTSQ 97 (100)
T ss_dssp EEEEECSCS
T ss_pred EEEEecccc
Confidence 999999744
No 354
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.21 E-value=3.5e-06 Score=73.66 Aligned_cols=76 Identities=20% Similarity=0.124 Sum_probs=64.7
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
+..+||.|+|+ .+|+++|.+++.++ |...-+.++ .+.|||||.|.++++|.+.++.++|+.+. .+.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~--G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----g~~ 78 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPF--GNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVE----SVQ 78 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTT--SCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEET----TEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhC--CCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeEC----CeE
Confidence 45589999996 89999999999876 666666663 46799999999999999999999999886 688
Q ss_pred EEEEeeeccc
Q 003964 701 ASLAYARIQG 710 (783)
Q Consensus 701 ~~v~yAriQG 710 (783)
+.|.||+-+.
T Consensus 79 l~v~~a~~~~ 88 (97)
T 1x5p_A 79 LKVNIARKQP 88 (97)
T ss_dssp EEEECCSSCC
T ss_pred EEEEECCCCC
Confidence 9999998654
No 355
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.16 E-value=2.9e-06 Score=72.76 Aligned_cols=76 Identities=12% Similarity=0.156 Sum_probs=61.7
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
..-+||.|+|||..+|+++|++++..+ |...-+.++.| +.|||||.|.+.++|.. .++..+. -..+.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~-----~~g~afV~f~~~~~a~~----~~~~~~~--~~g~~ 69 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQY--GDVMDVFIPKP-----FRAFAFVTFADDQIAQS----LCGEDLI--IKGIS 69 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTT--SCCCEEECCSS-----CCSCCEEECSCHHHHHH----TTTCEEE--ETTEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHc--CCeeEEEEecC-----CCCEEEEEECCHHHHHH----HhcCCce--eCCEE
Confidence 455899999999999999999999776 77888888866 67999999999999864 5666543 12578
Q ss_pred EEEEeeecc
Q 003964 701 ASLAYARIQ 709 (783)
Q Consensus 701 ~~v~yAriQ 709 (783)
+.|.||+-+
T Consensus 70 l~v~~a~~~ 78 (88)
T 1wf0_A 70 VHISNAEPK 78 (88)
T ss_dssp EEEECCCCC
T ss_pred EEEEecCCC
Confidence 889998754
No 356
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.16 E-value=1.8e-06 Score=81.04 Aligned_cols=79 Identities=11% Similarity=0.105 Sum_probs=63.9
Q ss_pred CceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccEE
Q 003964 622 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 701 (783)
Q Consensus 622 ~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv~ 701 (783)
..+||.|+|||...|.++|++++... .-.-+-+.|+.|.. +...|||||.|.++++|.+.++. +++.+. .+.+
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~----gR~I 113 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIG----HRYI 113 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBT----TBCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEEC----CEEE
Confidence 34789999999999999999999876 21122789999977 88899999999999999999985 666554 4566
Q ss_pred EEEeee
Q 003964 702 SLAYAR 707 (783)
Q Consensus 702 ~v~yAr 707 (783)
.|.+|.
T Consensus 114 ~V~~a~ 119 (126)
T 2hgm_A 114 EVFKSS 119 (126)
T ss_dssp CCEEEC
T ss_pred EEEECC
Confidence 777774
No 357
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.11 E-value=2.8e-06 Score=76.50 Aligned_cols=71 Identities=18% Similarity=0.227 Sum_probs=58.1
Q ss_pred CCCCEEEEecCCCC-----CCH----HHHHHHhhcCCCEEEEecCCCcccc--ccCHHHHHHHHHHhCCCeeCCcEeEEE
Q 003964 192 HPSRTLFVRNINSN-----VED----LELRSLFEQYGDIRTLYTACKHRGF--FYDVRAAEAALRALNRSDINGKRIKLE 260 (783)
Q Consensus 192 ~psrtLFVGNLp~d-----vTE----eeLrelFsqfG~I~~v~~tgKsrGF--F~d~edAekAI~aLNG~~I~Gr~IkVe 260 (783)
+|..||+|.-++.. .-+ .+|.+.|++||+|..++... .++| |.+.++|.+||+ |||.++.||.|+|+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~-d~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~ 90 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQ-GQMLVTFADSHSALSVLD-VDGMKVKGRAVKIS 90 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEET-TEEEEECSCSHHHHHHHH-GGGSEETTEEEEEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEec-CcEEEEEcChHHHHHHHh-cCCeeeCCeEEEEe
Confidence 45679999988743 222 57899999999999988322 2388 999999999999 99999999999999
Q ss_pred ecCC
Q 003964 261 PSRP 264 (783)
Q Consensus 261 ~A~p 264 (783)
+..+
T Consensus 91 ~k~~ 94 (95)
T 1ufw_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8654
No 358
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.09 E-value=1.4e-06 Score=82.91 Aligned_cols=79 Identities=10% Similarity=0.067 Sum_probs=65.5
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
...+||.|+|||...|.++|++++... | ..-+.|+.|.. +.+.|||||.|.++++|.+.+ ..+++.+. .+.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~--G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~----gR~ 114 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPL--N-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQ----HRY 114 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSC--C-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSS----SCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--C-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEEC----CEE
Confidence 445799999999999999999999876 3 44789999965 888999999999999999999 77887665 456
Q ss_pred EEEEeeec
Q 003964 701 ASLAYARI 708 (783)
Q Consensus 701 ~~v~yAri 708 (783)
+.|.+|.-
T Consensus 115 i~V~~a~~ 122 (139)
T 2hgn_A 115 IELFLNST 122 (139)
T ss_dssp CCCEECCC
T ss_pred EEEEECCC
Confidence 67777653
No 359
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.06 E-value=5.5e-06 Score=70.24 Aligned_cols=72 Identities=18% Similarity=0.294 Sum_probs=58.4
Q ss_pred CceeEEeecCCCccCHHHHHHHHhhhC--CC-------ccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccc
Q 003964 622 TRTTLMIKNIPNKYTSKMLLAAIDENH--RG-------TYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKW 692 (783)
Q Consensus 622 ~RTTvMIRNIPNk~tq~~L~~~ide~~--~g-------~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w 692 (783)
..+||.|+|||..+|+++|++++.... .| ...-+.++.| .|||||.|.++++|...+ .+||..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 458999999999999999999998762 12 5556666654 699999999999999999 9999988
Q ss_pred cCCCCccEEEEE
Q 003964 693 EKFNSEKVASLA 704 (783)
Q Consensus 693 ~~~~s~Kv~~v~ 704 (783)
. .+.+.|.
T Consensus 78 ~----g~~l~V~ 85 (87)
T 2hzc_A 78 Q----GQSLKIR 85 (87)
T ss_dssp T----TEECEEE
T ss_pred C----CeEEEEe
Confidence 7 4455554
No 360
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04 E-value=4.5e-06 Score=72.52 Aligned_cols=74 Identities=9% Similarity=0.055 Sum_probs=61.1
Q ss_pred CceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccEE
Q 003964 622 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 701 (783)
Q Consensus 622 ~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv~ 701 (783)
..+||.|+|||..+|+++|++++..+ |...-+ ++|-.++. ||||.|.++++|...++ ++|+.+. .+.+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~--G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~----g~~l 74 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAF--GPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLG----GHRL 74 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGT--SCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEET----TEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhc--CCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEEC----CEEE
Confidence 34699999999999999999999876 555443 77766665 99999999999999999 9999887 5667
Q ss_pred EEEeee
Q 003964 702 SLAYAR 707 (783)
Q Consensus 702 ~v~yAr 707 (783)
.|.+|.
T Consensus 75 ~V~~a~ 80 (94)
T 2e5g_A 75 RVRPRE 80 (94)
T ss_dssp CCBCSC
T ss_pred EEEECC
Confidence 776664
No 361
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.04 E-value=1.6e-05 Score=70.88 Aligned_cols=73 Identities=14% Similarity=0.079 Sum_probs=64.7
Q ss_pred ceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccEEE
Q 003964 623 RTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVAS 702 (783)
Q Consensus 623 RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv~~ 702 (783)
-+-|.|+||+...|.++|++++.++ |+.--++|.. +.|||||-|.++++|.+.++.+||.++. .+.+.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~--G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~----gr~I~ 74 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQH--GPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLA----NTTIF 74 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHH--SCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEET----TEEEE
T ss_pred cceEEEeCCCccCCHHHHHHHHHhh--CCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEEC----CcEEE
Confidence 3678999999999999999999998 6666666644 5899999999999999999999999987 78899
Q ss_pred EEeee
Q 003964 703 LAYAR 707 (783)
Q Consensus 703 v~yAr 707 (783)
|.+|.
T Consensus 75 V~~A~ 79 (89)
T 2wbr_A 75 AESPS 79 (89)
T ss_dssp EECCC
T ss_pred EEECC
Confidence 99993
No 362
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.00 E-value=1.8e-05 Score=77.69 Aligned_cols=78 Identities=13% Similarity=0.122 Sum_probs=66.6
Q ss_pred eeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccEEEE
Q 003964 624 TTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASL 703 (783)
Q Consensus 624 TTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv~~v 703 (783)
.+|.|+|||..+|.++|.+++..+ |+..-+++.. +.+.|||||.|.+.++|.+.++.+||+.+.. ..+.+.|
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~f--G~V~~V~i~~----k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g--~g~~L~V 118 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKF--GTVLKIITFT----KNNQFQALLQYADPVSAQHAKLSLDGQNIYN--ACCTLRI 118 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHH--SCEEEEEEEE----SSSCEEEEEEESCHHHHHHHHHHSTTBCSSS--SCSCEEE
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhc--CCEEEEEEEe----CCCCCEEEEEECCHHHHHHHHHHhCCCEecC--CCcEEEE
Confidence 678999999999999999999888 8888777742 2357999999999999999999999998852 2367899
Q ss_pred Eeeecc
Q 003964 704 AYARIQ 709 (783)
Q Consensus 704 ~yAriQ 709 (783)
.||+-+
T Consensus 119 ~~Ak~~ 124 (164)
T 1sjr_A 119 DFSKLT 124 (164)
T ss_dssp EECSSS
T ss_pred EEecCC
Confidence 999865
No 363
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=97.94 E-value=2.8e-05 Score=70.21 Aligned_cols=81 Identities=9% Similarity=0.080 Sum_probs=66.5
Q ss_pred CceeEEeecCCCc--c---CHHHHHHHHhhhCCCccceEEecccccc-ccceeEEEEeccChhHHHHHHHHHcCccccCC
Q 003964 622 TRTTLMIKNIPNK--Y---TSKMLLAAIDENHRGTYDFLYLPIDFKN-KCNVGYAFINMVSPSHIISFYEAFNGKKWEKF 695 (783)
Q Consensus 622 ~RTTvMIRNIPNk--~---tq~~L~~~ide~~~g~YDFlYLPiDf~~-~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~ 695 (783)
.-+||.|+|+... + +.++|++++.++ |+..-++++.|-.+ +...|||||.|.++++|.+.++.+||+.+.
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~--G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~-- 82 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKY--GKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFG-- 82 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGG--SCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEET--
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhc--CCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEEC--
Confidence 3468999999742 2 566777777555 88888999988654 577999999999999999999999999886
Q ss_pred CCccEEEEEeeec
Q 003964 696 NSEKVASLAYARI 708 (783)
Q Consensus 696 ~s~Kv~~v~yAri 708 (783)
.+.+.|.||+.
T Consensus 83 --Gr~i~v~~a~~ 93 (105)
T 2pe8_A 83 --GRVVKACFYNL 93 (105)
T ss_dssp --TEECEEEECCH
T ss_pred --CcEEEEEEcCH
Confidence 68899999973
No 364
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=97.94 E-value=2.1e-05 Score=72.50 Aligned_cols=77 Identities=19% Similarity=0.118 Sum_probs=64.6
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccE
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
+..+||.|+|+ .+|.++|.+++..+ |...-+.++ .+.|||||.|.+.++|...++.++|..+. .+.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~--G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~----g~~ 102 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPF--GNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVE----SVQ 102 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTT--CCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCS----SCB
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHcc--CCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEEC----CeE
Confidence 44689999996 59999999999876 666666664 46799999999999999999999999875 678
Q ss_pred EEEEeeecccH
Q 003964 701 ASLAYARIQGQ 711 (783)
Q Consensus 701 ~~v~yAriQGk 711 (783)
+.|.||+-+..
T Consensus 103 l~V~~a~~~~~ 113 (121)
T 2bz2_A 103 LKVNIARKQPM 113 (121)
T ss_dssp CEEEECCSSCC
T ss_pred EEEEEeCCCCC
Confidence 89999986643
No 365
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=97.85 E-value=2.4e-05 Score=77.58 Aligned_cols=78 Identities=17% Similarity=0.217 Sum_probs=66.0
Q ss_pred CceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCccEE
Q 003964 622 TRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVA 701 (783)
Q Consensus 622 ~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv~ 701 (783)
..+||.|+|||...|.++|.+++..+ |...-+.++.|.. +...|||||.|.+.++|..+++..+ ..|. .+.+
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~--G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~----Gr~l 179 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDK--GQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPG-QKYK----ETDL 179 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTS--CCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCTT-CEET----TEEC
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcC--CCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhCC-CeEC----CEEE
Confidence 34799999999999999999999876 7888999999864 7789999999999999999997664 3554 5677
Q ss_pred EEEeee
Q 003964 702 SLAYAR 707 (783)
Q Consensus 702 ~v~yAr 707 (783)
.|.|++
T Consensus 180 ~V~~~~ 185 (193)
T 2voo_A 180 LILFKD 185 (193)
T ss_dssp EEEETT
T ss_pred EEEEhH
Confidence 787754
No 366
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=97.84 E-value=2.6e-05 Score=80.72 Aligned_cols=80 Identities=11% Similarity=0.065 Sum_probs=66.6
Q ss_pred CCceeEEeecCCCcc---------CHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCcc
Q 003964 621 DTRTTLMIKNIPNKY---------TSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKK 691 (783)
Q Consensus 621 D~RTTvMIRNIPNk~---------tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~ 691 (783)
...+||-|.|||..+ |.++|.+++.++ |.+.-+.+.. +.|||||.|.+.++|...+++++|+.
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f--G~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL--GDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT--SCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHcc--CCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 346899999999998 799999999887 8888887763 47999999999999999999999998
Q ss_pred cc--------CCCCccEEEEEeeec
Q 003964 692 WE--------KFNSEKVASLAYARI 708 (783)
Q Consensus 692 w~--------~~~s~Kv~~v~yAri 708 (783)
+- .-...+.+.|.||+-
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC-
T ss_pred EeccccccccccCCCCEEEEEEccC
Confidence 71 111367899999984
No 367
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=97.83 E-value=1.9e-05 Score=78.91 Aligned_cols=59 Identities=15% Similarity=0.143 Sum_probs=51.8
Q ss_pred CCHHHHHHHhhcCCCEEEEec---------CCCcccc----ccCHHHHHHHHHHhCCCeeCCcEeEEEecCC
Q 003964 206 VEDLELRSLFEQYGDIRTLYT---------ACKHRGF----FYDVRAAEAALRALNRSDINGKRIKLEPSRP 264 (783)
Q Consensus 206 vTEeeLrelFsqfG~I~~v~~---------tgKsrGF----F~d~edAekAI~aLNG~~I~Gr~IkVe~A~p 264 (783)
-.+++|++.|++||+|.++.. +++++|| |.+.++|++||++|||+.+.||.|+|.++..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 356899999999999999871 3377787 9999999999999999999999999999853
No 368
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.81 E-value=3.9e-05 Score=69.11 Aligned_cols=75 Identities=17% Similarity=0.233 Sum_probs=57.7
Q ss_pred ceeEEeecC--CCccC---------HHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCcc
Q 003964 623 RTTLMIKNI--PNKYT---------SKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKK 691 (783)
Q Consensus 623 RTTvMIRNI--PNk~t---------q~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~ 691 (783)
-.||.|||| |..+. +++|++++..+ |...-+++ .|- ...|||||.|.+.++|.+.++.+||+.
T Consensus 15 s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~--G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 15 ERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF--GQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT--SCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred ceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc--CCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 468999999 33322 34566665544 77777776 343 268999999999999999999999998
Q ss_pred ccCCCCccEEEEEeee
Q 003964 692 WEKFNSEKVASLAYAR 707 (783)
Q Consensus 692 w~~~~s~Kv~~v~yAr 707 (783)
+. .+.+.|.||.
T Consensus 89 ~~----gr~l~v~~a~ 100 (112)
T 2dit_A 89 FG----GRQITAQAWD 100 (112)
T ss_dssp ET----TEECEEEECC
T ss_pred EC----CcEEEEEEeC
Confidence 86 6888999985
No 369
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=97.73 E-value=0.00011 Score=69.37 Aligned_cols=83 Identities=12% Similarity=0.185 Sum_probs=67.7
Q ss_pred cCCCCceeEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeE-EEEeccChhHHHHHHHHHcCccccCCC
Q 003964 618 SGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGY-AFINMVSPSHIISFYEAFNGKKWEKFN 696 (783)
Q Consensus 618 ~g~D~RTTvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GY-AFINf~~~~~~~~f~~~fng~~w~~~~ 696 (783)
.+......|-|+|||..+|.++|.+++.++ |+..-+.++.+ +.|+ |||-|.++++|...++.+||+.|..
T Consensus 23 ~~ps~VL~I~V~NL~~~vte~~L~~lFs~y--G~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g-- 93 (130)
T 3zzy_A 23 AGQSPVLRIIVENLFYPVTLDVLHQIFSKF--GTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYN-- 93 (130)
T ss_dssp --CCSEEEEEEESCCSCCCHHHHHHHHTTS--SCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEET--
T ss_pred CCCCceEEEEECCCCCCCCHHHHHHHHhCc--CCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecC--
Confidence 334556788899999999999999999887 77777776543 2476 9999999999999999999999863
Q ss_pred CccEEEEEeeecc
Q 003964 697 SEKVASLAYARIQ 709 (783)
Q Consensus 697 s~Kv~~v~yAriQ 709 (783)
..+.+.|.|||.+
T Consensus 94 ~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 94 ACCTLRIDFSKLT 106 (130)
T ss_dssp TEEEEEEEECSCS
T ss_pred CCcEEEEEecCCC
Confidence 3478899999865
No 370
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.72 E-value=5.2e-05 Score=68.43 Aligned_cols=75 Identities=9% Similarity=0.093 Sum_probs=59.3
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhhC---CCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCC
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDENH---RGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNS 697 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~~---~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s 697 (783)
...|+|.|+|||-+.+.++|++.|.+.| .|+.=-+ ++ |+|||-|.+.++|.+.++.++|...-
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~---- 72 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVF---- 72 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSS----
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccC----
Confidence 4568899999999999999776554432 1243222 33 99999999999999999999999765
Q ss_pred ccEEEEEeeecc
Q 003964 698 EKVASLAYARIQ 709 (783)
Q Consensus 698 ~Kv~~v~yAriQ 709 (783)
.|.+.|.||+-.
T Consensus 73 gr~i~v~~A~~~ 84 (96)
T 2diu_A 73 GNRIIVSFTPKN 84 (96)
T ss_dssp SSCCEEESSCCS
T ss_pred CceEEEEecCCC
Confidence 789999999854
No 371
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=97.66 E-value=0.00011 Score=66.13 Aligned_cols=79 Identities=15% Similarity=0.260 Sum_probs=62.7
Q ss_pred eeEEeecC--CCccCH--------HHHHHHHhhhCCCccceEEeccccccc--cceeEEEEeccChhHHHHHHHHHcCcc
Q 003964 624 TTLMIKNI--PNKYTS--------KMLLAAIDENHRGTYDFLYLPIDFKNK--CNVGYAFINMVSPSHIISFYEAFNGKK 691 (783)
Q Consensus 624 TTvMIRNI--PNk~tq--------~~L~~~ide~~~g~YDFlYLPiDf~~~--~N~GYAFINf~~~~~~~~f~~~fng~~ 691 (783)
++|.|+|+ |..+.. ++|++++.+ .|+..-+++|.|..+. ...|||||.|.++++|.+.++.+||+.
T Consensus 6 ~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k--~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 6 EVLCLMNMVLPEELLDDEEYEEIVEDVRDECSK--YGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp SEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHT--TSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred eEEEEECCCCHHHccChHHHHHHHHHHHHHHHc--cCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 57889998 655542 344444433 3899999999998653 578999999999999999999999998
Q ss_pred ccCCCCccEEEEEeeec
Q 003964 692 WEKFNSEKVASLAYARI 708 (783)
Q Consensus 692 w~~~~s~Kv~~v~yAri 708 (783)
+. .+.+.|.|+..
T Consensus 84 f~----GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FA----NRVVVTKYCDP 96 (105)
T ss_dssp ET----TEECEEEEECH
T ss_pred eC----CCEEEEEEeCH
Confidence 86 78889999863
No 372
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=97.65 E-value=0.00013 Score=67.45 Aligned_cols=90 Identities=10% Similarity=0.138 Sum_probs=66.3
Q ss_pred CchhhhcCCCCceeEEeecCC--CccC---HHHHHHHHhhhCCCccceEEecccccc----ccceeEEEEeccChhHHHH
Q 003964 612 DLDKIISGEDTRTTLMIKNIP--NKYT---SKMLLAAIDENHRGTYDFLYLPIDFKN----KCNVGYAFINMVSPSHIIS 682 (783)
Q Consensus 612 d~~~I~~g~D~RTTvMIRNIP--Nk~t---q~~L~~~ide~~~g~YDFlYLPiDf~~----~~N~GYAFINf~~~~~~~~ 682 (783)
-+.++.++. .-++|.|+|+- ..+. .++|++++.+ .|+..=++++.|..+ ...+|||||.|.++++|.+
T Consensus 10 ~~qkl~~~~-ps~vl~L~Nm~~~~el~ddleedl~eef~k--~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~ 86 (118)
T 3ue2_A 10 VMQKLLRKQ-ESTVMVLRNMVDPKDIDDDLEGEVTEECGK--FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHK 86 (118)
T ss_dssp TTHHHHHHH-SCCEEEEESCSCGGGCCTTHHHHHHHHHTT--TSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHH
T ss_pred HHHHhcCCC-CCCEEEEECCCCHHHHHHHHHHHHHHHHhc--cCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHH
Confidence 345555543 33678899983 3343 2333333332 388999999999763 4678999999999999999
Q ss_pred HHHHHcCccccCCCCccEEEEEeeec
Q 003964 683 FYEAFNGKKWEKFNSEKVASLAYARI 708 (783)
Q Consensus 683 f~~~fng~~w~~~~s~Kv~~v~yAri 708 (783)
.++.+||+.+. .+.+.|.|+..
T Consensus 87 Ai~~LnGr~f~----GR~i~v~~~~~ 108 (118)
T 3ue2_A 87 AIQALNGRWFA----GRKVVAEVYDQ 108 (118)
T ss_dssp HHHHHTTCEET----TEECEEEEECH
T ss_pred HHHHHCCCEEC----CcEEEEEEcCh
Confidence 99999999886 78889999863
No 373
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.53 E-value=0.00028 Score=65.97 Aligned_cols=76 Identities=21% Similarity=0.174 Sum_probs=62.4
Q ss_pred eEEeecCCCccCHHHHHHHHhhhCCCccceEEeccccccccceeE-EEEeccChhHHHHHHHHHcCccccCCCCccEEEE
Q 003964 625 TLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGY-AFINMVSPSHIISFYEAFNGKKWEKFNSEKVASL 703 (783)
Q Consensus 625 TvMIRNIPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GY-AFINf~~~~~~~~f~~~fng~~w~~~~s~Kv~~v 703 (783)
.|-|.|||..+|.++|.+++.++ |++.-+.+.. + + || |||-|.+.++|...++.+||+.+.. ....+.|
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~y--G~V~~v~i~~--~---~-Gf~aFVef~~~~~A~~A~~~LnG~~i~g--~~~~l~V 96 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPV--GKVQRIVIFK--R---N-GIQAMVEFESVLCAQKAKAALNGADIYA--GCCTLKI 96 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTT--SCEEEEEEEE--S---S-SEEEEEEESSHHHHHHHHHHHTTCCCBT--TBSEEEE
T ss_pred EEEEcCcCCCCCHHHHHHHHHhc--CCEEEEEEEe--C---C-CCEEEEEECCHHHHHHHHHHhCCCEecC--CCeEEEE
Confidence 35689999999999999999887 7777777732 2 2 85 9999999999999999999998862 1247889
Q ss_pred Eeeeccc
Q 003964 704 AYARIQG 710 (783)
Q Consensus 704 ~yAriQG 710 (783)
.||+-+.
T Consensus 97 ~~Ak~~~ 103 (124)
T 2e5i_A 97 EYARPTR 103 (124)
T ss_dssp ECCSCSC
T ss_pred EEecCCc
Confidence 9998654
No 374
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=97.36 E-value=0.00067 Score=64.69 Aligned_cols=78 Identities=8% Similarity=-0.031 Sum_probs=66.2
Q ss_pred eeEEeecC----CCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccC----hhH----HHHHHH--HHcC
Q 003964 624 TTLMIKNI----PNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVS----PSH----IISFYE--AFNG 689 (783)
Q Consensus 624 TTvMIRNI----PNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~----~~~----~~~f~~--~fng 689 (783)
|+|.|.|+ |...|+..|++++.++ |+..-+-+..|-.|+..+|||||-|.+ ++. |.+++. ..+|
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~f--GeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng 80 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKY--GEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSG 80 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTT--SCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTC
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcC
Confidence 89999999 9999999999999876 899999999999999999999999997 544 788888 5688
Q ss_pred ccccCCCCccEEEEEeee
Q 003964 690 KKWEKFNSEKVASLAYAR 707 (783)
Q Consensus 690 ~~w~~~~s~Kv~~v~yAr 707 (783)
..+. ...+.|.+=+
T Consensus 81 ~~I~----Gr~irV~ln~ 94 (136)
T 2j8a_A 81 CFIM----GFKFEVILNK 94 (136)
T ss_dssp EEET----TEEEEEEECC
T ss_pred Ceec----CcEEEEEECc
Confidence 8887 4566666644
No 375
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=97.29 E-value=0.00017 Score=64.80 Aligned_cols=72 Identities=8% Similarity=0.107 Sum_probs=55.8
Q ss_pred cCCCccCHHHHHHHHhh----------hCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCcc
Q 003964 630 NIPNKYTSKMLLAAIDE----------NHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEK 699 (783)
Q Consensus 630 NIPNk~tq~~L~~~ide----------~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~K 699 (783)
++|..+|+++|.+.+++ .-.|+..-+.++.|.. +...|||||.|.++++|.+.++.+||+.+. .+
T Consensus 22 ~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~----Gr 96 (104)
T 1jmt_A 22 GLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFN----GQ 96 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEET----TE
T ss_pred CcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEEC----CE
Confidence 34455667777655532 1248888899998864 577999999999999999999999999876 57
Q ss_pred EEEEEee
Q 003964 700 VASLAYA 706 (783)
Q Consensus 700 v~~v~yA 706 (783)
++.|.||
T Consensus 97 ~i~v~~s 103 (104)
T 1jmt_A 97 PIHAELS 103 (104)
T ss_dssp ECCEEEC
T ss_pred EEEEEEc
Confidence 7778776
No 376
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.28 E-value=0.00068 Score=60.93 Aligned_cols=76 Identities=17% Similarity=0.138 Sum_probs=58.9
Q ss_pred ceeEEeecCC-------CccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCC
Q 003964 623 RTTLMIKNIP-------NKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKF 695 (783)
Q Consensus 623 RTTvMIRNIP-------Nk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~ 695 (783)
..+|.|+-.+ ..+|.++|++++..+ |.+..++++ +...|||||.|.++++|...++..++.
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~--G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~~----- 77 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKY--GEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVGL----- 77 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTT--SCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCBC-----
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhc--CCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCCC-----
Confidence 3455555544 458999999999887 788888887 356899999999999999999985443
Q ss_pred CCccEEEEEeeecccH
Q 003964 696 NSEKVASLAYARIQGQ 711 (783)
Q Consensus 696 ~s~Kv~~v~yAriQGk 711 (783)
..+.+.|.||+-+..
T Consensus 78 -~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 78 -VDNPLKISWLEGQPQ 92 (100)
T ss_dssp -SSSBCEEECSSCCCC
T ss_pred -CCCeEEEEEccCCCC
Confidence 256788999986653
No 377
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=97.26 E-value=0.0005 Score=74.69 Aligned_cols=78 Identities=22% Similarity=0.317 Sum_probs=64.4
Q ss_pred CCceeEEeec--CCCccCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCCc
Q 003964 621 DTRTTLMIKN--IPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSE 698 (783)
Q Consensus 621 D~RTTvMIRN--IPNk~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~ 698 (783)
..-.||.|.| |+...|+++|++++.++ |+.+-+.++. +.|||||.|.+.++|.+.++.+||+..-.....
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~--G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKC--GLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTT--SCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhc--CCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 3345899999 68999999999999998 7888888764 469999999999999999999999988544323
Q ss_pred -cEEEEEee
Q 003964 699 -KVASLAYA 706 (783)
Q Consensus 699 -Kv~~v~yA 706 (783)
+++-|+|+
T Consensus 88 ~~~ly~~~~ 96 (345)
T 3tht_A 88 KITLYLNFV 96 (345)
T ss_dssp EEECEEEEC
T ss_pred ceEEEEEEe
Confidence 46777777
No 378
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=96.97 E-value=0.002 Score=59.17 Aligned_cols=87 Identities=18% Similarity=0.258 Sum_probs=64.0
Q ss_pred eEEeecCCCccC------HHHHHHHHhhhC--CCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCC
Q 003964 625 TLMIKNIPNKYT------SKMLLAAIDENH--RGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFN 696 (783)
Q Consensus 625 TvMIRNIPNk~t------q~~L~~~ide~~--~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~ 696 (783)
+|.|+|+=..-. .++|.+-|.+.| .|+..-++++.|- ..|||||.|.++++|.+.++.+||+.+.
T Consensus 9 vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~--- 81 (114)
T 3s6e_A 9 CFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA--- 81 (114)
T ss_dssp EEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET---
T ss_pred EEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC---
Confidence 578888754443 344544444333 3788888887663 4899999999999999999999999887
Q ss_pred CccEEEEEeeecccHHHHHHHhccCc
Q 003964 697 SEKVASLAYARIQGQAALVTHFQNSS 722 (783)
Q Consensus 697 s~Kv~~v~yAriQGk~ali~hf~nss 722 (783)
.+.+.|.|+..+-. .++|..+.
T Consensus 82 -GR~i~v~~~~~~~y---~~~fp~a~ 103 (114)
T 3s6e_A 82 -GKMITAAYVPLPTY---HNLFPDSM 103 (114)
T ss_dssp -TEECEEEEECHHHH---HHHCGGGS
T ss_pred -CEEEEEEEEcHHHH---HHhCcccc
Confidence 78899999985543 45665544
No 379
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.0034 Score=58.14 Aligned_cols=69 Identities=22% Similarity=0.289 Sum_probs=61.1
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhcC-----CCEEEEecCCCcccc---ccCHHHHHHHHHHhCCCeeCCcEeEEEec
Q 003964 194 SRTLFVRNINSNVEDLELRSLFEQY-----GDIRTLYTACKHRGF---FYDVRAAEAALRALNRSDINGKRIKLEPS 262 (783)
Q Consensus 194 srtLFVGNLp~dvTEeeLrelFsqf-----G~I~~v~~tgKsrGF---F~d~edAekAI~aLNG~~I~Gr~IkVe~A 262 (783)
.++|=+-|||..+++..++.+.++| |.|+.+...-...|- |.|...|-+|.-+|+|.+|.||+|+|.-.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence 5889999999999999999999999 999998844445554 99999999999999999999999998643
No 380
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.30 E-value=0.0051 Score=56.24 Aligned_cols=73 Identities=26% Similarity=0.275 Sum_probs=57.8
Q ss_pred CCEEEEecCCCCC-CH----HHHHHHhhcCCCEEEEe--cCCC-ccccccCHHHHHHHHHHhCCCeeCCcEeEEEecCCC
Q 003964 194 SRTLFVRNINSNV-ED----LELRSLFEQYGDIRTLY--TACK-HRGFFYDVRAAEAALRALNRSDINGKRIKLEPSRPG 265 (783)
Q Consensus 194 srtLFVGNLp~dv-TE----eeLrelFsqfG~I~~v~--~tgK-srGFF~d~edAekAI~aLNG~~I~Gr~IkVe~A~pr 265 (783)
.++|+|-||+.++ +. +.++++|.+|+++.... .+-+ -+-.|.+.++|.+|-..|++..+.|++|+|-++.+-
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCCC
Confidence 3689999998875 32 56789999999887755 2211 112299999999999999999999999999999854
Q ss_pred c
Q 003964 266 G 266 (783)
Q Consensus 266 ~ 266 (783)
.
T Consensus 85 ~ 85 (104)
T 1wey_A 85 H 85 (104)
T ss_dssp S
T ss_pred C
Confidence 3
No 381
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.73 E-value=0.061 Score=49.16 Aligned_cols=83 Identities=25% Similarity=0.354 Sum_probs=68.7
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhcC-----CCEEEEecCCCcccc--ccCHHHHHHHHHHhCCCeeCCcEeEEEecCCCc
Q 003964 194 SRTLFVRNINSNVEDLELRSLFEQY-----GDIRTLYTACKHRGF--FYDVRAAEAALRALNRSDINGKRIKLEPSRPGG 266 (783)
Q Consensus 194 srtLFVGNLp~dvTEeeLrelFsqf-----G~I~~v~~tgKsrGF--F~d~edAekAI~aLNG~~I~Gr~IkVe~A~pr~ 266 (783)
.++|.|.|||.++.++.|+-+|+.- |+|..+.... ..++ |.+.+.|++.++ -..+.|++.+|.|....++.
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P~~~~~ 85 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-CGGVLTFREPADAERVLA-QADHELHGAQLSLRPAPPRA 85 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEECCCCC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-CcEEEEEcChHHHHHHhc-CCcceecCeEEEEEcCCCCC
Confidence 5799999999999999999999972 6898887444 4455 999999988887 23578999999999999988
Q ss_pred cccccccccccc
Q 003964 267 ARRNLMQQLNQE 278 (783)
Q Consensus 267 ~rr~~vqqlsq~ 278 (783)
.+|-+.++++..
T Consensus 86 ~~r~ll~gl~~~ 97 (104)
T 2dhx_A 86 PARLLLQGLPPG 97 (104)
T ss_dssp CCCCCCCSCCCC
T ss_pred cceEeeecCCCC
Confidence 888888887654
No 382
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=94.00 E-value=0.1 Score=51.72 Aligned_cols=65 Identities=9% Similarity=0.061 Sum_probs=51.3
Q ss_pred HHHHHHHHhhhCCCccceEEecccccc----ccceeEEEEeccChhHHHHHHHHHcCccccCCCCccEEEEEeee
Q 003964 637 SKMLLAAIDENHRGTYDFLYLPIDFKN----KCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNSEKVASLAYAR 707 (783)
Q Consensus 637 q~~L~~~ide~~~g~YDFlYLPiDf~~----~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s~Kv~~v~yAr 707 (783)
+++|.+.+.++ |+..=+.++.+..+ ...+|++||.|.+.++|.+.++.+||+.+. .+.+.+.|+-
T Consensus 143 ~~dl~~e~~~~--G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~----gr~i~~~~~~ 211 (222)
T 3dxb_A 143 EGEVTEECGKF--GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA----GRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHTTT--SCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS----SSBCEEEECC
T ss_pred HHHHHHHHHcc--CCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC----CeEEEEEEcC
Confidence 34454454433 78888888865544 488999999999999999999999999887 6778888875
No 383
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.94 E-value=0.23 Score=44.39 Aligned_cols=71 Identities=13% Similarity=0.229 Sum_probs=55.1
Q ss_pred eeEEeecCC-----CccCHHHHHHHHhhhC-CCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCC
Q 003964 624 TTLMIKNIP-----NKYTSKMLLAAIDENH-RGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNS 697 (783)
Q Consensus 624 TTvMIRNIP-----Nk~tq~~L~~~ide~~-~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s 697 (783)
-||+|...| +-++..++.++++.+. .|..=-+.+..|. +||.|.+.+.|...++ +||.+..
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~---- 74 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELL---- 74 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEET----
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeC----
Confidence 589999887 4567666666666543 4655555666665 8999999999999998 9999876
Q ss_pred ccEEEEEeee
Q 003964 698 EKVASLAYAR 707 (783)
Q Consensus 698 ~Kv~~v~yAr 707 (783)
.|.+.|.+|+
T Consensus 75 Gr~LkV~lkt 84 (91)
T 2dnr_A 75 NRTITIALKS 84 (91)
T ss_dssp TEEEEEEECC
T ss_pred CeEEEEEeCC
Confidence 7888998876
No 384
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=91.23 E-value=0.41 Score=42.63 Aligned_cols=59 Identities=7% Similarity=0.083 Sum_probs=48.8
Q ss_pred CEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-cC--------CCcccc--ccCHHHHHHHHHHhCCCeeC
Q 003964 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLY-TA--------CKHRGF--FYDVRAAEAALRALNRSDIN 253 (783)
Q Consensus 195 rtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-~t--------gKsrGF--F~d~edAekAI~aLNG~~I~ 253 (783)
+||.|++||+.+||+++.+.++.+.++...+ .. .-+|.| |.+.+++..-.+.++|+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 5899999999999999999999998876554 11 124555 99999999999999999874
No 385
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.67 E-value=0.73 Score=42.94 Aligned_cols=79 Identities=11% Similarity=0.128 Sum_probs=59.7
Q ss_pred ceeEEeecCCCc-cCHHHHHHHHhhhCCCccceEEeccccccccceeEEEEeccC-hhHHHHHHHHHcCccccCCCCccE
Q 003964 623 RTTLMIKNIPNK-YTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVS-PSHIISFYEAFNGKKWEKFNSEKV 700 (783)
Q Consensus 623 RTTvMIRNIPNk-~tq~~L~~~ide~~~g~YDFlYLPiDf~~~~N~GYAFINf~~-~~~~~~f~~~fng~~w~~~~s~Kv 700 (783)
-+-|-|.||+.. .|.++|+++|.++ |..-|+-+..|-.+ |||=|.+ +..|..++..++.-+..--. +
T Consensus 18 G~il~v~~l~~~~~sredLke~F~~~--G~V~~Vd~~~g~~t------gfVrf~~~~~~A~~av~~ln~~~~~i~g--~- 86 (121)
T 1owx_A 18 GCLLKFSGDLDDQTCREDLHILFSNH--GEIKWIDFVRGAKE------GIILFKEKAKEALGKAKDANNGNLQLRN--K- 86 (121)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHTCSS--CCEEEEECCTTCSE------EEEEESSCHHHHHHHHHHTTTSCBCTTS--S-
T ss_pred CeEEEEecCCCCcCCHHHHHHHHHhc--CCEEEEEEecCCCE------EEEEECCChHHHHHHHHHhhcCCcEEeC--c-
Confidence 377999999999 9999999999875 78888877777664 9999999 79999999999633332111 2
Q ss_pred EEEEeeecccHHH
Q 003964 701 ASLAYARIQGQAA 713 (783)
Q Consensus 701 ~~v~yAriQGk~a 713 (783)
.+.+--+.|.++
T Consensus 87 -~~~~evL~GeeE 98 (121)
T 1owx_A 87 -EVTWEVLEGEVE 98 (121)
T ss_dssp -SEEEEECCHHHH
T ss_pred -EEEEEECCCHHH
Confidence 344555666554
No 386
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=89.21 E-value=0.97 Score=42.20 Aligned_cols=67 Identities=16% Similarity=0.131 Sum_probs=52.7
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhcCCCEEEEecCCCcccc----ccCHHHHHHHHHHhCCCeeCC-cEeEEEecC
Q 003964 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGF----FYDVRAAEAALRALNRSDING-KRIKLEPSR 263 (783)
Q Consensus 194 srtLFVGNLp~dvTEeeLrelFsqfG~I~~v~~tgKsrGF----F~d~edAekAI~aLNG~~I~G-r~IkVe~A~ 263 (783)
.+.|-|-+.+... ...+-..|++||+|.+..... ..-+ |.+..+|++||. .||..|.| -.|-|....
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~-~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN-TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS-SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC-CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 5789999998885 577888999999999987421 1123 999999999998 69999985 667777654
No 387
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.43 E-value=0.88 Score=40.94 Aligned_cols=70 Identities=10% Similarity=0.203 Sum_probs=52.0
Q ss_pred ceeEEeecCC------CccCHHHHHHHHhhhC-CCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCC
Q 003964 623 RTTLMIKNIP------NKYTSKMLLAAIDENH-RGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKF 695 (783)
Q Consensus 623 RTTvMIRNIP------Nk~tq~~L~~~ide~~-~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~ 695 (783)
--||++..++ +.++.++..++++.+. .|+.=-+.+..|- +||.|.+.+.|...++ ++|.+..
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~-- 83 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK-- 83 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET--
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC--
Confidence 3699999987 4577766666666543 3655555555553 9999999999999998 9999887
Q ss_pred CCccEEEEEe
Q 003964 696 NSEKVASLAY 705 (783)
Q Consensus 696 ~s~Kv~~v~y 705 (783)
.+.+.|.+
T Consensus 84 --Gr~L~V~~ 91 (95)
T 1ufw_A 84 --GRAVKISG 91 (95)
T ss_dssp --TEEEEEEC
T ss_pred --CeEEEEec
Confidence 66666654
No 388
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=86.78 E-value=1.1 Score=40.96 Aligned_cols=78 Identities=14% Similarity=0.133 Sum_probs=59.2
Q ss_pred CCCCceeEEeecCCCcc-CHHHHHHHHhhhC---CCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccC
Q 003964 619 GEDTRTTLMIKNIPNKY-TSKMLLAAIDENH---RGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEK 694 (783)
Q Consensus 619 g~D~RTTvMIRNIPNk~-tq~~L~~~ide~~---~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~ 694 (783)
|.|.-|||.|.||+..+ +...|++.|.+.+ ...--|-|||- ....-|||.++++|.+....+++....
T Consensus 1 ~s~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-------FRRirv~F~~~~~A~~AR~~Lh~~~f~- 72 (104)
T 1wey_A 1 GSSGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-------FKRVRINFSNPLSAADARLRLHKTEFL- 72 (104)
T ss_dssp CCSCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-------TTEEEEECSSTTHHHHHHHTSTTSEET-
T ss_pred CCCCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-------ceEEEEEeCChHHHHHHHHHhccceec-
Confidence 56778999999999866 6666655544322 22233888875 237799999999999999999988766
Q ss_pred CCCccEEEEEeee
Q 003964 695 FNSEKVASLAYAR 707 (783)
Q Consensus 695 ~~s~Kv~~v~yAr 707 (783)
.|.|.|.||.
T Consensus 73 ---g~~~r~YFgq 82 (104)
T 1wey_A 73 ---GKEMKLYFAQ 82 (104)
T ss_dssp ---TEECEEECCC
T ss_pred ---CceeEEEecC
Confidence 6789999987
No 389
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=83.63 E-value=1.4 Score=41.92 Aligned_cols=69 Identities=17% Similarity=0.197 Sum_probs=51.6
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe-cC-------------CCcccc---------ccCHHHHHHHHHHhCCC
Q 003964 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLY-TA-------------CKHRGF---------FYDVRAAEAALRALNRS 250 (783)
Q Consensus 194 srtLFVGNLp~dvTEeeLrelFsqfG~I~~v~-~t-------------gKsrGF---------F~d~edAekAI~aLNG~ 250 (783)
...|.|-+.|.+.+ ..+-+.|++||.|.+-. .+ .+--+| |.+..+|++||. .||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 35677888877654 56678899999998843 11 121222 999999999998 7999
Q ss_pred eeCCcEeEEEecCC
Q 003964 251 DINGKRIKLEPSRP 264 (783)
Q Consensus 251 ~I~Gr~IkVe~A~p 264 (783)
.|.|..|-|.+..+
T Consensus 85 ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VFNGVLLGVIPYTK 98 (132)
T ss_dssp EETTEECEEEECCH
T ss_pred EeCcEEEEEEECCH
Confidence 99999999988753
No 390
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=82.30 E-value=2.9 Score=37.72 Aligned_cols=70 Identities=9% Similarity=0.044 Sum_probs=51.5
Q ss_pred CCCEEEEecCCCCCCHHHHHHHhhcCCCEEEEe---------cCCCcccc--ccCHHHHHHHHHHhCCCeeCCc-----E
Q 003964 193 PSRTLFVRNINSNVEDLELRSLFEQYGDIRTLY---------TACKHRGF--FYDVRAAEAALRALNRSDINGK-----R 256 (783)
Q Consensus 193 psrtLFVGNLp~dvTEeeLrelFsqfG~I~~v~---------~tgKsrGF--F~d~edAekAI~aLNG~~I~Gr-----~ 256 (783)
-+-||.|+.||+.+||+++.+.++..=++...+ ...-+|.| |.+.++...-.+..+|+.+... +
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 356899999999999999988887765553322 11234556 9999999999999999987432 3
Q ss_pred eEEEec
Q 003964 257 IKLEPS 262 (783)
Q Consensus 257 IkVe~A 262 (783)
..|++|
T Consensus 88 a~VE~A 93 (97)
T 2l08_A 88 AVVEFA 93 (97)
T ss_dssp EEEEEC
T ss_pred eEEEec
Confidence 446665
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=80.38 E-value=2.5 Score=38.34 Aligned_cols=51 Identities=14% Similarity=0.253 Sum_probs=37.9
Q ss_pred EEEecCCCCCCHHHHHHHhhcCCCEEEEecCCCcccc--ccCHHHHHHHHHHhC
Q 003964 197 LFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGF--FYDVRAAEAALRALN 248 (783)
Q Consensus 197 LFVGNLp~dvTEeeLrelFsqfG~I~~v~~tgKsrGF--F~d~edAekAI~aLN 248 (783)
||+-..|.++...||.++|+.||.|. |+-...--.| |.+.+.|..|+..+.
T Consensus 18 Vf~l~FP~ewKt~DI~~lFs~fggv~-I~WidDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 18 VLHVTFPKEWKTSDLYQLFSAFGNIQ-ISWIDDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp EEEEECCTTCCHHHHHHHHTTTCSCC-CEEEETTEEEEECSCHHHHHHHHHHHH
T ss_pred EEEEeCChhhhhHHHHHHhhccCCEE-EEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 44449999999999999999998543 3311122344 999999999999763
No 392
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.68 E-value=6.7 Score=35.82 Aligned_cols=60 Identities=12% Similarity=0.203 Sum_probs=45.9
Q ss_pred cCCCCceeEEeecCCCccCHHHHHHHHhh---hCCCccc-eEEeccccccccceeEEEEeccChhHHHHHHHH
Q 003964 618 SGEDTRTTLMIKNIPNKYTSKMLLAAIDE---NHRGTYD-FLYLPIDFKNKCNVGYAFINMVSPSHIISFYEA 686 (783)
Q Consensus 618 ~g~D~RTTvMIRNIPNk~tq~~L~~~ide---~~~g~YD-FlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~ 686 (783)
+|...+.+|.++|||...+++.|.-.++. ...|... .-|+| +=|.|-|.+++.|.+-.+.
T Consensus 3 ~~~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---------~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 3 SGSSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---------CGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CSCCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---------TEEEEEESSHHHHHHHHTC
T ss_pred CCccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---------CcEEEEEcChHHHHHHhcC
Confidence 46678899999999999998877767765 2456665 44777 4579999999999776543
No 393
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=66.82 E-value=1.9 Score=48.52 Aligned_cols=50 Identities=14% Similarity=0.322 Sum_probs=35.5
Q ss_pred CCEEEEecCCCCCCHHHHHHHhhcCCCEEEEecCCCcccc-----ccCHHHHHHHHH
Q 003964 194 SRTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGF-----FYDVRAAEAALR 245 (783)
Q Consensus 194 srtLFVGNLp~dvTEeeLrelFsqfG~I~~v~~tgKsrGF-----F~d~edAekAI~ 245 (783)
.|.|||. .+.++++.+|.++|++||+|..+... +.+|. |.+.+++.+++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~-~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFY-ESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEE-CSSSEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEE-ccCCeEEEEEeCCHHHHHHHHh
Confidence 5789997 79999999999999999999998732 24453 999888886654
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=64.02 E-value=4.1 Score=37.04 Aligned_cols=51 Identities=14% Similarity=0.250 Sum_probs=38.1
Q ss_pred EEEecCCCCCCHHHHHHHhhcCCCEEEEecCCCcccc--ccCHHHHHHHHHHhC
Q 003964 197 LFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGF--FYDVRAAEAALRALN 248 (783)
Q Consensus 197 LFVGNLp~dvTEeeLrelFsqfG~I~~v~~tgKsrGF--F~d~edAekAI~aLN 248 (783)
||+-..|.++...||.++|+.||.|. |.-...--.| |.+.+.|..|+..+.
T Consensus 8 V~~l~FP~ewKt~Di~~lFs~fggv~-I~WidDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHVTFPKEWKTSDLYQLFSAFGNIQ-ISWIDDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEECCTTCCHHHHHHHTTTSEEEE-EEEEETTEEEEEEEEECHHHHHHHHHT
T ss_pred EEEEeCChhhhhHHHHHHHhccCCEE-EEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 44449999999999999999999543 4411222344 999999999999874
No 395
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=62.33 E-value=40 Score=31.32 Aligned_cols=74 Identities=16% Similarity=0.250 Sum_probs=63.0
Q ss_pred CCceeEEeecCCCccCHHHHHHHHhhh---CCCccceEEeccccccccceeEEEEeccChhHHHHHHHHHcCccccCCCC
Q 003964 621 DTRTTLMIKNIPNKYTSKMLLAAIDEN---HRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIISFYEAFNGKKWEKFNS 697 (783)
Q Consensus 621 D~RTTvMIRNIPNk~tq~~L~~~ide~---~~g~YDFlYLPiDf~~~~N~GYAFINf~~~~~~~~f~~~fng~~w~~~~s 697 (783)
|.-.||=|=|||-+++...+++++.+. -.|.+-=+||.-|+ |=|+|=|.+...|-+..-+.+|..+.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~---- 88 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQ---- 88 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEET----
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeec----
Confidence 345788899999999999999999987 35788889999997 57999999999999999999999887
Q ss_pred ccEEEEE
Q 003964 698 EKVASLA 704 (783)
Q Consensus 698 ~Kv~~v~ 704 (783)
.+++.+.
T Consensus 89 gr~Lr~g 95 (117)
T 2l9w_A 89 GKVIRSG 95 (117)
T ss_dssp TEEEEEE
T ss_pred CeEEEec
Confidence 4444443
No 396
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=31.29 E-value=73 Score=35.99 Aligned_cols=52 Identities=17% Similarity=0.286 Sum_probs=42.4
Q ss_pred CEEEEecCCCCCCHHHHHHHhhcCCCEEEEecCCCcccc--ccCHHHHHHHHHHhC
Q 003964 195 RTLFVRNINSNVEDLELRSLFEQYGDIRTLYTACKHRGF--FYDVRAAEAALRALN 248 (783)
Q Consensus 195 rtLFVGNLp~dvTEeeLrelFsqfG~I~~v~~tgKsrGF--F~d~edAekAI~aLN 248 (783)
..++|+ ++..+...+|.++|+.||.| +|+.....+.| |.+.+.|..++++++
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSSEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCCeEEEEECCHHHHHHHHHHHH
Confidence 467776 88899999999999999965 45544555677 999999999999885
No 397
>2qih_A Protein USPA1; trimeric, parallel alpha-helical coiled-coil, cell adhesion; 1.90A {Moraxella catarrhalis}
Probab=26.50 E-value=15 Score=35.15 Aligned_cols=16 Identities=63% Similarity=0.862 Sum_probs=0.6
Q ss_pred CCCCCCCCcCCCCCCC
Q 003964 484 IGSHHQHHVGSAPSGV 499 (783)
Q Consensus 484 ~~~~~~~hvgsap~~~ 499 (783)
.++|||||-|||-+.+
T Consensus 2 ~~~~~~~~~~~~~~~~ 17 (157)
T 2qih_A 2 RGSHHHHHHGSATSAN 17 (157)
T ss_dssp ---------------C
T ss_pred CCcccccccccccccc
Confidence 4678999999998765
No 398
>3v2a_A Vascular endothelial growth factor A; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens}
Probab=23.56 E-value=17 Score=34.53 Aligned_cols=16 Identities=63% Similarity=1.020 Sum_probs=0.0
Q ss_pred CCCCCCCCcCCCCCCC
Q 003964 484 IGSHHQHHVGSAPSGV 499 (783)
Q Consensus 484 ~~~~~~~hvgsap~~~ 499 (783)
.++|||||-||||-..
T Consensus 3 ~~~~~~~~~~~~~~~~ 18 (134)
T 3v2a_A 3 FGSHHHHHHGSAPMAE 18 (134)
T ss_dssp ----------------
T ss_pred cccccccccCCCcccc
Confidence 3578899999999643
No 399
>2ls0_1 Zoocin A endopeptidase; specificity, hydrolase; NMR {Streptococcus equi subsp}
Probab=22.44 E-value=35 Score=31.95 Aligned_cols=14 Identities=64% Similarity=1.130 Sum_probs=11.9
Q ss_pred CCCCCCCCcCCCCC
Q 003964 484 IGSHHQHHVGSAPS 497 (783)
Q Consensus 484 ~~~~~~~hvgsap~ 497 (783)
.++|||||-||.|.
T Consensus 2 ~~~~~~~~~~~~~~ 15 (128)
T 2ls0_1 2 RGSHHHHHHGSEPT 15 (128)
T ss_dssp CSCCCCCCCCSCCC
T ss_pred CccccccccCCCCC
Confidence 46889999999986
Done!