BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003965
(783 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8WU76|SCFD2_HUMAN Sec1 family domain-containing protein 2 OS=Homo sapiens GN=SCFD2
PE=1 SV=2
Length = 684
Score = 83.2 bits (204), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 166/796 (20%), Positives = 309/796 (38%), Gaps = 168/796 (21%)
Query: 15 KQISEHIKDAILYLDSGCTESFQLIGAFPVLLELGVRAVCCLENMSPLDSVVDWNSNIDP 74
+Q+ +K A++YLD+ C ES LLE C L P D
Sbjct: 15 EQVLAKVKRAVVYLDAACAESLHWGCGSTRLLEAVGGPDCHLREFEP-----DAIGGGAK 69
Query: 75 MRKMVVMTSRLLSDAHRYIVRCLSASYGIRHCAIFTSISEIAHSAYTDSPLGPDAFHEYE 134
K V + S LL I+R + ++C + T++S H P A E +
Sbjct: 70 QPKAVFVLSCLLKGRTVEILRDIICRSHFQYCVVVTTVSHAVHLTANHVPAAAAAEMEGQ 129
Query: 135 TLLLQDYEELVRKRQTKSGQSEDTGFQKRLTFEDDGWSHLTSSEEDTSTFEASSSGKDFY 194
+ + EE + + W G Y
Sbjct: 130 QPVFEQLEEKLCE-----------------------W-----------------MGNMNY 149
Query: 195 KEDVGQELVVSVHHFPMILCPLSPRVFVLPSEGSVAEACLSVEH-EDSLSPVLPPIGTGL 253
+V H P++L P++P + P+ S+ H +S P +G+
Sbjct: 150 TAEV--------FHVPLLLAPVAPHFALTPAFASLFPLLPQDVHLLNSARPDKRKLGSLG 201
Query: 254 FSDGDDVPPGAILTAHLIY----HLASKMDLKMEIFSLGDLSKNVGKLLTDMSSLYDVGR 309
D + P +L + L + ++ E F++G LS+ + D+++
Sbjct: 202 DVDSTTLTPELLLQIRCLVSGLSSLCEHLGVREECFAVGSLSQVIA---ADLANYAPAKN 258
Query: 310 RKRTAG----LLLVDRTFDLLTPCC-HGDSLVDRMFSSLPRRKRTAFYAHIKGSQSRAKL 364
RK+TA ++ VDRT DL HGD+LV+++ S+LP+ + G + +
Sbjct: 259 RKKTAAGRASVVFVDRTLDLTGAVGHHGDNLVEKIISALPQ---------LPGHTNDVMV 309
Query: 365 GSSSVQRSPVEVQIPLAKILSEEDSKLDDSRLQGNIEAFLRGWDAYNSSSEVVDLSLSSE 424
I L + +EE++ YN + LS SS+
Sbjct: 310 N-----------MIALTALHTEEEN--------------------YNVVAPGC-LSQSSD 337
Query: 425 IELLSGSFVSTENFRGTPYMEALLDRRMKDGTVLIKKWLQEALRQENLTVNVRSRPGSAT 484
+ + E T + EA+++ +++ L EA +ENL + + G T
Sbjct: 338 ----TTAKALWEALLNTKHKEAVME---------VRRHLVEAASRENLPIKMSM--GRVT 382
Query: 485 KSELQAMIKALAKNQSSLVRNRGIIQFATAALAALDESHSARWDAFISAEKMLHVSAEDT 544
+L + I+ N +L+ + G++Q A L +A+WD F++ E++L S ++
Sbjct: 383 PGQLMSYIQLFKNNLKALMNHCGLLQLGLATAQTLKHPQTAKWDNFLAFERLLLQSIGES 442
Query: 545 SQSLAAQIGDLINKSCLVGSHDQKTRKMELSSRLLSFKDALLLTVTGYILAGENFPTSGS 604
+ S+ + L+ ++ Q+T + + S L + +VTG + ++
Sbjct: 443 AMSVV--LNQLLP---MIKPVTQRTNE-DYSPEELLILLIYIYSVTGELTVDKDL----- 491
Query: 605 GGPFSWQEEHFLKEAIVDAIFENPSEAKFKFLHEQQYNDMQLKLEL-----QDRVDNLFK 659
+ E +K+A+ E + Q+ D + L + VD LF
Sbjct: 492 -----CEAEEKVKKALAQVFCEESGLSPLL----QKITDWDSSINLTFHKSKIAVDELFT 542
Query: 660 FLHKVSGLKRKNIPLRDSAFGSDSHFHGDSYASKGLLYKLLMKVL--AKSDVPGLEYHSS 717
L ++G R + S + +H H SY K LL +++ ++ + D +E+ SS
Sbjct: 543 SLRDIAG-ARSLLKQFKSVYVPGNHTHQASY--KPLLKQVVEEIFHPERPDSVDIEHMSS 599
Query: 718 ---------------TAKPSLADQNVILIFVIGGINGLEVHEALEALSESGRPDLELILG 762
++P +D ++++FV+GG+ EV + ++ L S +P ++I+
Sbjct: 600 GLTDLLKTGFSMFMKVSRPHPSDYPLLILFVVGGVTVSEV-KMVKDLVASLKPGTQVIVL 658
Query: 763 GTTLLTPADMFDLLLG 778
T LL P ++ +LL
Sbjct: 659 STRLLKPLNIPELLFA 674
>sp|Q8BTY8|SCFD2_MOUSE Sec1 family domain-containing protein 2 OS=Mus musculus GN=Scfd2
PE=2 SV=1
Length = 684
Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 86/354 (24%), Positives = 168/354 (47%), Gaps = 44/354 (12%)
Query: 445 EALLDRRMKDGTVLIKKWLQEALRQENLTVNVRSRPGSATKSELQAMIKALAKNQSSLVR 504
EALL+ + K+ + +++ L EA +ENL + + G T +L + I+ N +L
Sbjct: 345 EALLNSKHKEAVMEVRRHLVEAASRENLPIKMSM--GRVTPGQLMSYIQLFKNNLRALRN 402
Query: 505 NRGIIQFATAALAALDESHSARWDAFISAEKMLHVSAEDTSQSLAAQIGDLINKSCLVGS 564
+ G++Q A + L +A+WD F++ E++L S D+ ++A + L+ ++ S
Sbjct: 403 HCGLLQLGMATVQTLKHPQTAKWDNFLAFERLLLQSLGDS--TMAGVLNQLLP---MIKS 457
Query: 565 HDQKTRKMELSSRLLSFKDALLLTVTGYILAGENFPTSGSGGPFSWQEEHFLKEAIVDAI 624
Q+T S L+ ++ L+L + Y + G+ G E +K+A+ +
Sbjct: 458 SSQRT------SDDLNPEELLILLIYIYSVPGDVTLDRDLG-----DVEEKVKKALAHVL 506
Query: 625 FENPSEAKFKFLHEQQYNDMQLKLEL---QDRVDNLFKFLHKVSGLKRKNIPLRDSAFGS 681
E SE L + D + L L Q V+++F L +++G R + S +
Sbjct: 507 SEE-SELS-PLLQKITGCDSAVDLTLPKSQIAVNDVFMALREIAG-ARNLMRQFKSVYVP 563
Query: 682 DSHFHGDSYASKGLLYKLLMKVL--AKSDVPGLEYHSS---------------TAKPSLA 724
++ H SY K LL +++ ++ KSD +E+ SS ++P +
Sbjct: 564 GNNTHQASY--KPLLKQVVEEIFNPEKSDPIDIEHMSSGLTDLLKTGFSMFMKVSRPHPS 621
Query: 725 DQNVILIFVIGGINGLEVHEALEALSESGRPDLELILGGTTLLTPADMFDLLLG 778
D ++++FV+GG+ E + ++ L S +P ++++ T LL P ++ +LL
Sbjct: 622 DHPLLILFVVGGVTVAEA-KMVKDLVASLKPGTQVMVLSTRLLKPLNIPELLFA 674
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 8/77 (10%)
Query: 274 LASKMDLKMEIFSLGDLSKNVGKLLTDMSSLYDVGRRKRTA----GLLLVDRTFDLLTPC 329
L + ++ E F++G LS+ + TD+++ RK+TA ++ VDRT DL
Sbjct: 226 LCEHLGVREECFAVGPLSRVIA---TDLANYAPAKNRKKTATGRASVVFVDRTLDLTGAV 282
Query: 330 CH-GDSLVDRMFSSLPR 345
H GD+LV+++ S LP+
Sbjct: 283 GHHGDNLVEKIMSVLPQ 299
>sp|P61765|STXB1_RAT Syntaxin-binding protein 1 OS=Rattus norvegicus GN=Stxbp1 PE=1 SV=1
Length = 594
Score = 35.4 bits (80), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 714 YHSSTAKPSLADQNVILIFVIGGINGLEVHEALEALSESGRPDLELILGGTTLLTPADMF 773
+H + A ++IF++GG++ E+ A E +G+ E+++G T +LTP +
Sbjct: 522 WHKNKAPGEYRSGPRLIIFILGGVSLNEMRCAYEVTQANGK--WEVLIGSTHILTPQKLL 579
Query: 774 DLL 776
D L
Sbjct: 580 DTL 582
>sp|Q5R6D2|STXB1_PONAB Syntaxin-binding protein 1 OS=Pongo abelii GN=STXBP1 PE=2 SV=1
Length = 594
Score = 35.4 bits (80), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 714 YHSSTAKPSLADQNVILIFVIGGINGLEVHEALEALSESGRPDLELILGGTTLLTPADMF 773
+H + A ++IF++GG++ E+ A E +G+ E+++G T +LTP +
Sbjct: 522 WHKNKAPGEYRSGPRLIIFILGGVSLNEMRCAYEVTQANGK--WEVLIGSTHILTPQKLL 579
Query: 774 DLL 776
D L
Sbjct: 580 DTL 582
>sp|O08599|STXB1_MOUSE Syntaxin-binding protein 1 OS=Mus musculus GN=Stxbp1 PE=1 SV=2
Length = 594
Score = 35.4 bits (80), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 714 YHSSTAKPSLADQNVILIFVIGGINGLEVHEALEALSESGRPDLELILGGTTLLTPADMF 773
+H + A ++IF++GG++ E+ A E +G+ E+++G T +LTP +
Sbjct: 522 WHKNKAPGEYRSGPRLIIFILGGVSLNEMRCAYEVTQANGK--WEVLIGSTHILTPQKLL 579
Query: 774 DLL 776
D L
Sbjct: 580 DTL 582
>sp|P61764|STXB1_HUMAN Syntaxin-binding protein 1 OS=Homo sapiens GN=STXBP1 PE=1 SV=1
Length = 594
Score = 35.4 bits (80), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 714 YHSSTAKPSLADQNVILIFVIGGINGLEVHEALEALSESGRPDLELILGGTTLLTPADMF 773
+H + A ++IF++GG++ E+ A E +G+ E+++G T +LTP +
Sbjct: 522 WHKNKAPGEYRSGPRLIIFILGGVSLNEMRCAYEVTQANGK--WEVLIGSTHILTPQKLL 579
Query: 774 DLL 776
D L
Sbjct: 580 DTL 582
>sp|P61763|STXB1_BOVIN Syntaxin-binding protein 1 OS=Bos taurus GN=STXBP1 PE=1 SV=1
Length = 594
Score = 35.4 bits (80), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 714 YHSSTAKPSLADQNVILIFVIGGINGLEVHEALEALSESGRPDLELILGGTTLLTPADMF 773
+H + A ++IF++GG++ E+ A E +G+ E+++G T +LTP +
Sbjct: 522 WHKNKAPGEYRSGPRLIIFILGGVSLNEMRCAYEVTQANGK--WEVLIGSTHILTPQKLL 579
Query: 774 DLL 776
D L
Sbjct: 580 DTL 582
>sp|O00186|STXB3_HUMAN Syntaxin-binding protein 3 OS=Homo sapiens GN=STXBP3 PE=1 SV=2
Length = 592
Score = 35.4 bits (80), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 729 ILIFVIGGINGLEVHEALEALSESGRPDLELILGGTTLLTPADMFD 774
+++FVIGGI EV A E E+I+G T +LTP + D
Sbjct: 531 LIVFVIGGITYSEVRCAYEV--SQAHKSCEVIIGSTHVLTPKKLLD 574
>sp|Q6R748|STXB1_CHICK Syntaxin-binding protein 1 OS=Gallus gallus GN=STXBP1 PE=2 SV=1
Length = 594
Score = 35.4 bits (80), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 714 YHSSTAKPSLADQNVILIFVIGGINGLEVHEALEALSESGRPDLELILGGTTLLTPADMF 773
+H + A ++IF++GG++ E+ A E +G+ E+++G T +LTP +
Sbjct: 522 WHKNKAPGEYRSGPRLIIFILGGVSLNEMRCAYEVTQANGK--WEVLIGSTHILTPQKLL 579
Query: 774 DLL 776
D L
Sbjct: 580 DTL 582
>sp|P22213|SLY1_YEAST Protein SLY1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SLY1 PE=1 SV=1
Length = 666
Score = 34.7 bits (78), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 710 PGLEYHSSTAKPSLADQNVILIFVIGGINGLEVHEALE-ALSESGRPDLELILGGTTLLT 768
P + S T KP N L+FV+GG N LE E A S+ P +++ G T + T
Sbjct: 587 PKITRGSHTRKPKRQSYNKSLVFVVGGGNYLEYQNLQEWAHSQLHNPK-KVMYGSTAITT 645
Query: 769 PADMFD 774
PA+ +
Sbjct: 646 PAEFLN 651
>sp|Q5SM60|RSMA_THET8 Ribosomal RNA small subunit methyltransferase A OS=Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rsmA
PE=1 SV=1
Length = 271
Score = 34.7 bits (78), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 21/111 (18%)
Query: 193 FYKEDVGQELVVSVHHFPMIL---CPLSPRVF-VLPSEGSVAEACL-------SVEHEDS 241
F + GQ +VS H I+ P + VF V P G++ A L ++E +
Sbjct: 20 FADKRFGQNFLVSEAHLRRIVEAARPFTGPVFEVGPGLGALTRALLEAGAEVTAIEKDLR 79
Query: 242 LSPVLPPIGTGL-----FSDG-----DDVPPGAILTAHLIYHLASKMDLKM 282
L PVL +GL F D ++VP G++L A+L YH+A+ + ++
Sbjct: 80 LRPVLEETLSGLPVRLVFQDALLYPWEEVPQGSLLVANLPYHIATPLVTRL 130
>sp|Q72GC7|RSMA_THET2 Ribosomal RNA small subunit methyltransferase A OS=Thermus
thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
GN=rsmA PE=3 SV=1
Length = 271
Score = 33.9 bits (76), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 21/111 (18%)
Query: 193 FYKEDVGQELVVSVHHFPMIL---CPLSPRVF-VLPSEGSVAEACL-------SVEHEDS 241
F + GQ +VS H I+ P + VF V P G++ A L ++E +
Sbjct: 20 FADKRFGQNFLVSEVHLRRIVEAARPFTGPVFEVGPGLGALTRALLEAGAEVTAIEKDLR 79
Query: 242 LSPVLPPIGTGL-----FSDG-----DDVPPGAILTAHLIYHLASKMDLKM 282
L PVL +GL F D ++VP G++L A+L YH+A+ + ++
Sbjct: 80 LRPVLEETLSGLPVRLVFQDALLYPWEEVPQGSLLVANLPYHIATPLVTRL 130
>sp|Q9D379|HYEP_MOUSE Epoxide hydrolase 1 OS=Mus musculus GN=Ephx1 PE=1 SV=2
Length = 455
Score = 33.5 bits (75), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 20/110 (18%)
Query: 119 AYTDSPLGPDAF--HEYETLLLQDYEELVRKRQTKSGQSEDTGFQKRLTFEDDGWSHLTS 176
A DSP+G A+ ++ T +Y EL ED G +++ + ED L +
Sbjct: 313 ALNDSPVGLAAYILEKFSTWTKSEYREL-----------EDGGLERKFSLED-----LLT 356
Query: 177 SEEDTSTFEASSSGKDFYKEDVGQELVVSVHHFPMILCPLSPRVFVLPSE 226
+ T S + FYKE++GQ ++V H + P F PSE
Sbjct: 357 NIMIYWTTGTIVSSQRFYKENLGQGVMVHRHEGMKVFVPTGYSAF--PSE 404
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 278,198,623
Number of Sequences: 539616
Number of extensions: 11673097
Number of successful extensions: 29623
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 29607
Number of HSP's gapped (non-prelim): 24
length of query: 783
length of database: 191,569,459
effective HSP length: 126
effective length of query: 657
effective length of database: 123,577,843
effective search space: 81190642851
effective search space used: 81190642851
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)