Query 003965
Match_columns 783
No_of_seqs 244 out of 375
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 15:08:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003965.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003965hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1300 Vesicle trafficking pr 100.0 1.5E-40 3.3E-45 371.8 28.9 519 20-777 21-582 (593)
2 PF00995 Sec1: Sec1 family; I 100.0 4.6E-37 9.9E-42 354.0 32.6 517 25-776 3-564 (564)
3 KOG1299 Vacuolar sorting prote 100.0 4.1E-32 8.8E-37 295.8 28.1 414 203-779 119-548 (549)
4 COG5158 SEC1 Proteins involved 99.9 8.7E-24 1.9E-28 241.3 39.2 541 1-778 2-576 (582)
5 KOG1302 Vacuolar sorting prote 99.9 1.6E-23 3.6E-28 236.2 40.5 537 6-776 17-599 (600)
6 KOG1301 Vesicle trafficking pr 99.5 3.4E-12 7.4E-17 142.5 25.0 421 209-777 147-612 (621)
7 KOG3062 RNA polymerase II elon 83.1 0.83 1.8E-05 48.4 2.5 67 76-143 74-144 (281)
8 PF02310 B12-binding: B12 bind 45.5 42 0.0009 30.8 5.2 47 728-775 53-101 (121)
9 PRK08883 ribulose-phosphate 3- 28.8 59 0.0013 34.3 3.7 36 729-771 168-203 (220)
10 PRK05581 ribulose-phosphate 3- 28.6 60 0.0013 33.2 3.7 36 729-771 171-206 (220)
11 PF12327 FtsZ_C: FtsZ family, 28.6 95 0.0021 28.4 4.6 38 727-764 37-76 (95)
12 PLN02334 ribulose-phosphate 3- 26.5 59 0.0013 34.1 3.3 35 730-771 176-210 (229)
13 PRK00043 thiE thiamine-phospha 26.1 61 0.0013 32.9 3.2 34 729-769 161-194 (212)
14 cd00564 TMP_TenI Thiamine mono 24.6 74 0.0016 31.4 3.4 34 729-769 151-184 (196)
15 TIGR01163 rpe ribulose-phospha 24.3 81 0.0018 31.9 3.7 37 729-772 166-202 (210)
No 1
>KOG1300 consensus Vesicle trafficking protein Sec1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-40 Score=371.83 Aligned_cols=519 Identities=16% Similarity=0.206 Sum_probs=343.6
Q ss_pred HhhccEEEecCcchhhhhhcCCHHHHHhhccccccccccC-CCccccccccCCCCCCceEEEEEccccchhHHHHHHHH-
Q 003965 20 HIKDAILYLDSGCTESFQLIGAFPVLLELGVRAVCCLENM-SPLDSVVDWNSNIDPMRKMVVMTSRLLSDAHRYIVRCL- 97 (783)
Q Consensus 20 ~v~gavvylD~g~~E~l~w~gg~~~Lle~Ga~~V~~L~~~-s~~d~~~~~~~~~~~~~k~V~i~s~lL~~~~~~ilr~l- 97 (783)
+=+..|+-+|.-++=-+-..+-..-+++=|+..|=.+..- .|..+ =.++-|++.-= ..-..++++.
T Consensus 21 ~g~wkVLi~Dk~~~~ilss~~km~~i~~egIt~ve~i~~~ReP~~S-----------meaIY~i~pt~-~~V~~~i~Df~ 88 (593)
T KOG1300|consen 21 KGEWKVLVVDKLTMRILSSCCKMSEILEEGITIVEDINKRREPLPS-----------MEAIYFITPTE-ESVDCLIKDFE 88 (593)
T ss_pred CCeeEEEEecchHHHHHHHHHHHHHHHHcCceeeeeccccCCCCCc-----------ceeEEEecCch-hhHHHHHHhhc
Confidence 3356789999999888888888888889998877665221 11111 12333333221 1113344444
Q ss_pred HhcCCccEEEEEeecChhhhcccCCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCCcccccccccccCCCccccCCC
Q 003965 98 SASYGIRHCAIFTSISEIAHSAYTDSPLGPDAFHEYETLLLQDYEELVRKRQTKSGQSEDTGFQKRLTFEDDGWSHLTSS 177 (783)
Q Consensus 98 ~~~~~~~~c~V~tsvSe~aH~~~~~~~l~~~a~~e~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 177 (783)
-.++-...|.||..-. .. ..+|+.+... +. .+|.
T Consensus 89 ~~~~~Y~~ahifF~~~---------------c~----~~lf~~l~ks-~~------------------------a~~i-- 122 (593)
T KOG1300|consen 89 GRSPLYKAAHIFFLDP---------------CP----DPLFNKLSKS-RA------------------------AKKI-- 122 (593)
T ss_pred ccCcccceEEEEEcCC---------------CC----HHHHHHHHhh-hH------------------------hhhh--
Confidence 3355566676665541 00 1245555421 11 0111
Q ss_pred CCcccccccCCCCccccccccCCcceEEEEeeceeeccCCCCeecccCCchhhhhhcccccccCCCCCCCCCCCCCCCCC
Q 003965 178 EEDTSTFEASSSGKDFYKEDVGQELVVSVHHFPMILCPLSPRVFVLPSEGSVAEACLSVEHEDSLSPVLPPIGTGLFSDG 257 (783)
Q Consensus 178 ~~~~~~~~~~~s~~~~~~~~~~~~~~v~V~~~Pl~~~pl~~~lf~lp~~~s~~~~~l~~~~~~sl~p~lPp~~~g~~~d~ 257 (783)
-++...=+-|.|.+.++|+++..+++..+|..+.+
T Consensus 123 --------------------------~tlkeinl~F~p~ESqvF~~~~~~~~~~~y~~~~a------------------- 157 (593)
T KOG1300|consen 123 --------------------------KTLKEINLAFIPYESQVFTLDSPDAFLQLYSPDNA------------------- 157 (593)
T ss_pred --------------------------hhheecccccceecceeeeecChhhHHHhcCchhh-------------------
Confidence 34556667889999999999999998776654311
Q ss_pred CCCCCchHHHHHHHHHHHHhcCCcceeeecCchhHHHHHHHhhhhhhhh-c--------c--ccCCceeEEEEecccccc
Q 003965 258 DDVPPGAILTAHLIYHLASKMDLKMEIFSLGDLSKNVGKLLTDMSSLYD-V--------G--RRKRTAGLLLVDRTFDLL 326 (783)
Q Consensus 258 d~lp~~~~lla~~L~~L~~~l~l~~~if~~G~~Sr~Ia~~l~~m~~~~~-a--------~--~~k~~asLIlVDRtlDl~ 326 (783)
...+..+..+|+.+.++|..+|--|-+...|++++-.+.+-..+++-.. + + ..+...-|||+||++|.+
T Consensus 158 ~~~~~~l~~~a~~I~tvCatL~e~P~vRy~~~~~~~as~l~~~va~~l~~~~~~~~~~~~~~p~~~~seLlIlDRs~D~i 237 (593)
T KOG1300|consen 158 AIIDANLEKIADQIATVCATLGEYPNVRYRGDFARNASELAQKVAAKLWDAYKAYKPSIGNGPQKTRSELLILDRSFDPV 237 (593)
T ss_pred hhhhhHHHHHHHHHHHHHHHhCcCcceeeccccccCHHHHHHHHHHHHHHHHHhcccccCCCCCcccceEEEEecccccc
Confidence 1124567779999999999999999888888887765432222333111 0 1 124456799999999999
Q ss_pred cCCCC---CCchHHHHhhcCCCCCCccccccccCCccccccCCCCcCCCCceeeeeccccccccccccccccccchhhhh
Q 003965 327 TPCCH---GDSLVDRMFSSLPRRKRTAFYAHIKGSQSRAKLGSSSVQRSPVEVQIPLAKILSEEDSKLDDSRLQGNIEAF 403 (783)
Q Consensus 327 tp~~h---~e~LlDri~~~Lpr~~~~~~~~~~~~~~~~~~~~~~~~~r~~~dV~v~m~~l~~~~~~~~~~~~~~~~~~~~ 403 (783)
+|+.| |+-..--.+.+ .+- +|....
T Consensus 238 aPlLHE~TyqAM~~DLl~i----end----------------------------------------~Y~ye~-------- 265 (593)
T KOG1300|consen 238 APLLHEFTYQAMAYDLLPI----END----------------------------------------VYRYET-------- 265 (593)
T ss_pred chHHHHHHHHHHHHHHHhh----cCC----------------------------------------EEEEec--------
Confidence 99974 33322222221 111 111100
Q ss_pred hccccccCCCcchhcccccccccccCCcccccCCCCChhHHHHHHhhhhhhHHHHHHHHHHHHHHhcCCCcccccCCCCC
Q 003965 404 LRGWDAYNSSSEVVDLSLSSEIELLSGSFVSTENFRGTPYMEALLDRRMKDGTVLIKKWLQEALRQENLTVNVRSRPGSA 483 (783)
Q Consensus 404 ~~g~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~~~lweaLl~k~~kd~~~~V~k~L~Ea~~~E~l~~~ik~~~G~v 483 (783)
.| ++++.+-+ + |.--+| ++|..|+|+|++||...|++.+++|+++++.-. .+ ....
T Consensus 266 -~g-~~g~~kk~---------v------llde~D----~~WveLRH~HIadvse~l~~~~k~f~~~nk~~~-~~--~k~~ 321 (593)
T KOG1300|consen 266 -PG-KSGEKKKE---------V------LLDEDD----DLWVELRHKHIADVSERLTKKMKNFSSKNKRLQ-TK--SKET 321 (593)
T ss_pred -CC-CCCCccce---------e------ecccCC----cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-cc--cccc
Confidence 00 01111000 0 111223 799999999999999999999999999775321 11 1137
Q ss_pred CHHHHHHHHHHHhhCHHHHHhhhhHHHHHHHHHHHhcccchhHHHHHHHHHHHH-hhhcccchHh---HHHHHHHhhccC
Q 003965 484 TKSELQAMIKALAKNQSSLVRNRGIIQFATAALAALDESHSARWDAFISAEKML-HVSAEDTSQS---LAAQIGDLINKS 559 (783)
Q Consensus 484 T~~eL~~lik~l~~~~~~l~kh~g~LQLa~A~~qaL~~~~~s~wd~l~s~Eq~L-~~s~~dgs~s---~~~ql~~lI~~~ 559 (783)
+..+|++||++||++++++.|++.|+.||..||..++ ...++||++||+| .+++.+|... +..+++.++...
T Consensus 322 S~kDL~~mv~~lpqy~k~~~Kls~Hl~LA~eC~~~~~----~~L~~l~~iEQDLa~G~Daeg~kik~~~~~~~p~l~~~~ 397 (593)
T KOG1300|consen 322 STKDLSKMVKKLPQYQKELDKLSLHLELAEECMKKFQ----EGLEKLGAIEQDLATGTDAEGEKIKDSLRDLLPILLESN 397 (593)
T ss_pred chHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCCcccccHHHHHHhhhhhhcccC
Confidence 9999999999999999999999999999999999977 4899999999999 7778888873 445566666654
Q ss_pred ccCCCCccchhhhhhcccCCCHHHHHHHHhhhhhccCcCCCCCCCCCCCChHHHHHHHHHHHHHHhcCCCcchhhhhhhh
Q 003965 560 CLVGSHDQKTRKMELSSRLLSFKDALLLTVTGYILAGENFPTSGSGGPFSWQEEHFLKEAIVDAIFENPSEAKFKFLHEQ 639 (783)
Q Consensus 560 ~s~~~~~~~~~~~~~~~~~ls~ddiL~Lll~iyslaGe~~~~~~~~~~fs~~~E~~L~kaL~~ail~~~~~~~l~~l~~~ 639 (783)
. --++++++|++|++.-+|.. |++|.|+++|+.+..... +++
T Consensus 398 ~------------------~~~dklR~Illy~~~~~Gi~--------------ee~l~kL~~~~~i~~~~~---~ii--- 439 (593)
T KOG1300|consen 398 V------------------RLLDKLRLILLYIFERKGII--------------EENLAKLLQHAGISVEEM---QII--- 439 (593)
T ss_pred c------------------hHHHHHHHHHHHHHhcCCcc--------------HHHHHHHhcccCCCchHH---HHH---
Confidence 4 35688888888888877776 899999999985543221 112
Q ss_pred hchhchhhhhHhhhhhhHHhhhhhhhhccccccCCCCCCCCCCCcccccCccccccHHHHHHHHh-cCCCCCCCCCCCCC
Q 003965 640 QYNDMQLKLELQDRVDNLFKFLHKVSGLKRKNIPLRDSAFGSDSHFHGDSYASKGLLYKLLMKVL-AKSDVPGLEYHSST 718 (783)
Q Consensus 640 ~~~~~~L~~e~~~r~~~lf~~l~~~s~~r~~~k~lr~~~~~~~n~y~q~~~rh~PlL~~~le~l~-~k~d~p~~~~~s~~ 718 (783)
.+..++... . +.+ +...+...+.|+.|. .|++|+ ++||+|.|++|||+++ +++|..+||+.+.+
T Consensus 440 -~~~~~~~~~--~-~~~--------~~~~k~~~~~rker~-~e~tyq--lSR~~P~Ik~ilE~~i~~~Ld~~~fp~~~~~ 504 (593)
T KOG1300|consen 440 -QNLHILGVP--V-TKD--------SFLLKFDPPERKERV-EEQTYQ--LSRWVPVIKNILEKLIEDRLDKKHFPYLNDT 504 (593)
T ss_pred -hhHHHhCCc--c-ccC--------cccccCCCCcccccc-ccceee--eeeeehHHHHHHHHHHhccCChhhCccccCC
Confidence 111122221 0 000 122222333455555 578885 7999999999999999 78877777765432
Q ss_pred -----------CCC-------Cc----CCCCeEEEEEECCcCHHHHHHHHHHhhccCCCCcEEEEccccccChhHHHHHh
Q 003965 719 -----------AKP-------SL----ADQNVILIFVIGGINGLEVHEALEALSESGRPDLELILGGTTLLTPADMFDLL 776 (783)
Q Consensus 719 -----------~~~-------~p----~d~~~iIVFVVGGvTyeE~R~v~e~~~~s~~~~~~VilGgT~ilnp~~fl~~l 776 (783)
+|+ .| ..++++||||||||||+|+|++||+.+ ..+|+||||||+|+||++||++|
T Consensus 505 s~~~~~~~~~Sar~~~~~~~k~~~~~~~~g~ri~VfIiGGvT~SEmRvaYevs~---~~~~EViiGS~~iltP~~fL~~l 581 (593)
T KOG1300|consen 505 SETSSGSAATSARYGHPLSNKTPSAFKKPGQRIIVFIIGGVTFSEMRVAYEVSE---KLNREVIIGSDHILTPTKFLDDL 581 (593)
T ss_pred ccccccCccccccccCcccccCcchhhccCceEEEEEeCCccHHHHHHHHHHHH---hhCceEEECCcccCCHHHHHHHH
Confidence 111 12 147899999999999999999999954 34599999999999999999988
Q ss_pred h
Q 003965 777 L 777 (783)
Q Consensus 777 ~ 777 (783)
-
T Consensus 582 k 582 (593)
T KOG1300|consen 582 K 582 (593)
T ss_pred h
Confidence 5
No 2
>PF00995 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like molecules have been implicated in a variety of eukaryotic vesicle transport processes including neurotransmitter release by exocytosis []. They regulate vesicle transport by binding to a t-SNARE from the syntaxin family. This process is thought to prevent SNARE complex formation, a protein complex required for membrane fusion. Whereas Sec1 molecules are essential for neurotransmitter release and other secretory events, their interaction with syntaxin molecules seems to represent a negative regulatory step in secretion []. ; GO: 0006904 vesicle docking involved in exocytosis, 0016192 vesicle-mediated transport; PDB: 3C98_A 3PUJ_B 1FVH_A 1FVF_A 1EPU_A 2XHE_A 1MQS_A 2PJX_A 3PUK_A 1Y9J_A.
Probab=100.00 E-value=4.6e-37 Score=354.01 Aligned_cols=517 Identities=20% Similarity=0.250 Sum_probs=319.6
Q ss_pred EEEecCcchhhhhhcCCHHHHHhhccccccccccCCCccccccccCCCCCCceEEEEEccccchhHHHHHHHHHhcCCcc
Q 003965 25 ILYLDSGCTESFQLIGAFPVLLELGVRAVCCLENMSPLDSVVDWNSNIDPMRKMVVMTSRLLSDAHRYIVRCLSASYGIR 104 (783)
Q Consensus 25 vvylD~g~~E~l~w~gg~~~Lle~Ga~~V~~L~~~s~~d~~~~~~~~~~~~~k~V~i~s~lL~~~~~~ilr~l~~~~~~~ 104 (783)
|+.+|.-+...+--..+...|++.|+..+-.|++ . . . .-+..++|+|++-- ...-..|++++.....-.
T Consensus 3 vLi~D~~~~~ils~~~~~~~L~~~gV~~i~~l~~-~---r-----~-~~~~~~~iy~i~p~-~~~i~~i~~~~~~~~~~~ 71 (564)
T PF00995_consen 3 VLILDKSTLKILSSLCSMSDLLEHGVTLIEKLEN-K---R-----E-PMPSMDAIYFIRPT-PENIKRIIKDLKNPPYRS 71 (564)
T ss_dssp EEEE-HHHHHHHHCCS-HHHHHTTTEEEEEETTS-----------S--BTTSEEEEEE-S--HHHHHHHHHHCHSTSBSE
T ss_pred EEEECcccHHHHHhhcCHHHHHHcCCceEeeccc-h---h-----h-cCCCcceEEEEcCc-HHHHHHHHHHHHhccccc
Confidence 6888999999999999999999999998888866 1 0 0 11234588888765 455577777776655555
Q ss_pred EEEEEeecChhhhcccCCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCCcccccccccccCCCccccCCCCCccccc
Q 003965 105 HCAIFTSISEIAHSAYTDSPLGPDAFHEYETLLLQDYEELVRKRQTKSGQSEDTGFQKRLTFEDDGWSHLTSSEEDTSTF 184 (783)
Q Consensus 105 ~c~V~tsvSe~aH~~~~~~~l~~~a~~e~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 184 (783)
+.++|++. +.+.+.+.+++.. . .
T Consensus 72 ~~i~f~~~------------------------~~~~~~~~l~~~~---------------------~--------~---- 94 (564)
T PF00995_consen 72 YHIFFTPR------------------------VSESLLEILAESG---------------------V--------L---- 94 (564)
T ss_dssp EEEEESS---------------------------HHHHHHHHHSC---------------------G--------G----
T ss_pred EEEEEehh------------------------hhhHHHHhhhhcC---------------------c--------c----
Confidence 56666663 1123333333210 0 0
Q ss_pred ccCCCCccccccccCCcceEEEEeeceeeccCCCCeecccCCchhhhhhc-ccccccCCCCCCCCCCCCCCCCCCCCCCc
Q 003965 185 EASSSGKDFYKEDVGQELVVSVHHFPMILCPLSPRVFVLPSEGSVAEACL-SVEHEDSLSPVLPPIGTGLFSDGDDVPPG 263 (783)
Q Consensus 185 ~~~~s~~~~~~~~~~~~~~v~V~~~Pl~~~pl~~~lf~lp~~~s~~~~~l-~~~~~~sl~p~lPp~~~g~~~d~d~lp~~ 263 (783)
...-+|..+|+.|.|+++++|+++...++..++. ..+ ...
T Consensus 95 ----------------~~i~~i~e~~~~~~pld~d~fsl~~~~~~~~~~~~~~~-----------------------~~~ 135 (564)
T PF00995_consen 95 ----------------GRIKSIKEFNLDFIPLDSDLFSLEIPNSFSDLYSSDGD-----------------------ESS 135 (564)
T ss_dssp ----------------GGEEEEEETT--SEEECTTEEEES-TCHHHHHHSTTGH-----------------------HHH
T ss_pred ----------------ceecccccceeEEEEccchhhhhcccchHHHHhccccc-----------------------hhH
Confidence 1123499999999999999999999888877665 211 135
Q ss_pred hHHHHHHHHHHHHhcCCcceeeecCc-hhHHHHHHHhhhhhhhh----ccccCC-------ceeEEEEecccccccCCC-
Q 003965 264 AILTAHLIYHLASKMDLKMEIFSLGD-LSKNVGKLLTDMSSLYD----VGRRKR-------TAGLLLVDRTFDLLTPCC- 330 (783)
Q Consensus 264 ~~lla~~L~~L~~~l~l~~~if~~G~-~Sr~Ia~~l~~m~~~~~----a~~~k~-------~asLIlVDRtlDl~tp~~- 330 (783)
++.+|.+|++|+..+|.+|.|++.|+ .|+.||+.|.++-+... ...... ...|||+||++|++||++
T Consensus 136 l~~~a~~L~~l~~~~g~~p~I~~~g~~~a~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LiIlDR~~D~iTPll~ 215 (564)
T PF00995_consen 136 LQRIADSLLSLQLTLGEIPNIRYKGNSNAKRVAELLQKKLQENEDNFSSSNPDFPPGSSFERPLLIILDRSVDLITPLLH 215 (564)
T ss_dssp HHHHHHHHHHHHHHTT---EEEE-TTCHHHHHHHHHHHHHHHHHTTHCHCSTTTT-SCSCCSEEEEEEEGGG-SSTTTS-
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEeCchhHHHHHHHHHHHhhhccccccccccccCCccccCCceEEEecccccccchhhc
Confidence 67799999999999999999999999 99999998876554422 111111 245999999999999997
Q ss_pred --CCCchHHHHhhcCCCCCCccccccccCCccccccCCCCcCCCCceeeeeccccccccccccccccccchhhhhhcccc
Q 003965 331 --HGDSLVDRMFSSLPRRKRTAFYAHIKGSQSRAKLGSSSVQRSPVEVQIPLAKILSEEDSKLDDSRLQGNIEAFLRGWD 408 (783)
Q Consensus 331 --h~e~LlDri~~~Lpr~~~~~~~~~~~~~~~~~~~~~~~~~r~~~dV~v~m~~l~~~~~~~~~~~~~~~~~~~~~~g~~ 408 (783)
||++++|++|++= . +.|.++-...-.....
T Consensus 216 ~~TYe~li~d~~~i~-----~------------------------~~v~~~~~~~~~~~~~------------------- 247 (564)
T PF00995_consen 216 QWTYEGLIDDLFGIN-----N------------------------NKVEIPDEINSGENKK------------------- 247 (564)
T ss_dssp --BHHHHHHHHSTEB-----T------------------------TEEEEEECSSSSECEE-------------------
T ss_pred CceeeeEHHhhhhhc-----C------------------------CEeccccCCCccccce-------------------
Confidence 8899999999981 1 2444443221000000
Q ss_pred ccCCCcchhcccccccccccCCcccccCCCCChhHHHHHHhhhhhhHHHHHHHHHHHHHHhcCCCcccccCCCCCCHHHH
Q 003965 409 AYNSSSEVVDLSLSSEIELLSGSFVSTENFRGTPYMEALLDRRMKDGTVLIKKWLQEALRQENLTVNVRSRPGSATKSEL 488 (783)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~~~lweaLl~k~~kd~~~~V~k~L~Ea~~~E~l~~~ik~~~G~vT~~eL 488 (783)
.. ...++| ++|..++++|+.++...+.+.++++..+. . +.+....+.+++
T Consensus 248 ---------------~~------~L~~~D----~~~~~~r~~~~~~v~~~l~~~~~~~~~~~-~----~~~~~~~~~~~~ 297 (564)
T PF00995_consen 248 ---------------KV------VLNSND----PFFNEIRHLHFSEVGEKLNKKAKELKEEY-E----KSRSKSKSIQEM 297 (564)
T ss_dssp ---------------EE------E-STTC----TCHHHHTTSBCHHHHHHHHHHHHHHHHHC-H--------STTTHHCH
T ss_pred ---------------eE------ecCCCC----HHHHHHHhhCHHHHHHHHHHHHHHHHHhh-c----cccchhhHHHHH
Confidence 00 011234 79999999999999999999999998652 1 112345699999
Q ss_pred HHHHHHHhhCHHHHHhhhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHhh-hcccchHhHHHHHHHhhccCccCCCCcc
Q 003965 489 QAMIKALAKNQSSLVRNRGIIQFATAALAALDESHSARWDAFISAEKMLHV-SAEDTSQSLAAQIGDLINKSCLVGSHDQ 567 (783)
Q Consensus 489 ~~lik~l~~~~~~l~kh~g~LQLa~A~~qaL~~~~~s~wd~l~s~Eq~L~~-s~~dgs~s~~~ql~~lI~~~~s~~~~~~ 567 (783)
..+++.+++.++......-|+.++.+|+..++. ..+++++.+||.++. ...++. ....|.++|+...
T Consensus 298 ~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~---~~l~~~~~~Eq~i~~~~~~~~~--~~~~i~~~i~~~~------- 365 (564)
T PF00995_consen 298 KEFVKKLPELQEQQKSLSLHTNIAEEILKIIKK---RNLDELIELEQDIASGEDSDGE--LLQYIEELINSRK------- 365 (564)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTHHHHHHHHHHHHHSCHTTSH--B-SCHHHHHHSTT-------
T ss_pred HHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHhCCccchh--hHHHHHHHhhccC-------
Confidence 999999998888888888888999999888773 348999999998853 222222 2444777775221
Q ss_pred chhhhhhcccCCCHHHHHHHHhhhhhcc-CcCCCCCCCCCCCChHHHHHHHHHHHHHHhcCCCcchhhhhhhhhchhchh
Q 003965 568 KTRKMELSSRLLSFKDALLLTVTGYILA-GENFPTSGSGGPFSWQEEHFLKEAIVDAIFENPSEAKFKFLHEQQYNDMQL 646 (783)
Q Consensus 568 ~~~~~~~~~~~ls~ddiL~Lll~iysla-Ge~~~~~~~~~~fs~~~E~~L~kaL~~ail~~~~~~~l~~l~~~~~~~~~L 646 (783)
.+.+++|+|+ .+|++. |.. ..+.+.+++.|.++-.....+.- + .+..++
T Consensus 366 -----------~~~~d~LRLl-~L~sl~~g~~-----------~~~~~~l~~~l~~~~~g~~~l~~---l----~~L~~~ 415 (564)
T PF00995_consen 366 -----------ISIEDKLRLL-CLYSLTNGIK-----------GKDYDQLKKLLLQAGYGIEALQL---L----NNLEKL 415 (564)
T ss_dssp -----------STHHHHHHHH-HHHHHHH-HT-----------CBHHHHHHHHHHHTT--HCHHHH---H----HHGGGG
T ss_pred -----------CCHHHHHHHH-HHHHHHhcCC-----------cchHHHHHHHhhhcCCChHHHHH---H----HHHHHh
Confidence 6888888874 588888 333 23478899988887222211111 1 111122
Q ss_pred hhhHhh---h-hhhHHhhhhhh-hhccccccCCCCCCCCCCCcccccCccccccHHHHHHHHh-cCCC-CCCCCCCCCCC
Q 003965 647 KLELQD---R-VDNLFKFLHKV-SGLKRKNIPLRDSAFGSDSHFHGDSYASKGLLYKLLMKVL-AKSD-VPGLEYHSSTA 719 (783)
Q Consensus 647 ~~e~~~---r-~~~lf~~l~~~-s~~r~~~k~lr~~~~~~~n~y~q~~~rh~PlL~~~le~l~-~k~d-~p~~~~~s~~~ 719 (783)
++.... + ...+.+.++.+ +..+...+... ....++|. +|+|++.+++++++ ++++ ...|++.....
T Consensus 416 g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~----~y~Pli~rlve~~~~~~l~~~~~~~~~~~~~ 488 (564)
T PF00995_consen 416 GLLKSKDNSSNFQSIRKKLNLISKFNDKNDKNNP---KDISYVYS----GYAPLIVRLVEDLIKGKLDKEEEFPYLDPKP 488 (564)
T ss_dssp THHCBSHTTS--CTTC-TT---HHTTCCCSSSSC---SCCCSTTC----T---HHHHHHHHHHTTHSHHTTTSEBSSTCC
T ss_pred cchhhccCccchhhhccccccccccccccccccc---ccccchhc----ccccHHHHHHHHHhhccCCcccccccccccc
Confidence 221111 0 00011111111 00110111011 12345555 49999999999999 4443 33333322110
Q ss_pred -------------CC-----Cc--CCCCeEEEEEECCcCHHHHHHHHHHhhccCCCCcEEEEccccccChhHHHHHh
Q 003965 720 -------------KP-----SL--ADQNVILIFVIGGINGLEVHEALEALSESGRPDLELILGGTTLLTPADMFDLL 776 (783)
Q Consensus 720 -------------~~-----~p--~d~~~iIVFVVGGvTyeE~R~v~e~~~~s~~~~~~VilGgT~ilnp~~fl~~l 776 (783)
++ .+ ...++|||||||||||+|+|+++++... .+++++||||||+|+||.+|+++|
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viVf~vGGvTy~Ei~~l~~l~~~-~~~~~~iiigsT~il~~~~fl~~L 564 (564)
T PF00995_consen 489 KNLNGSSFSLRSSKPSRSKTQPSNKPRKRVIVFFVGGVTYSEIRALRELSKK-LGPGKEIIIGSTSILNPNDFLESL 564 (564)
T ss_dssp -----SSSSSS-------------S-SSEEEEEEETEBEHHHHHHHHHHHTT-SSSSSEEEEEESSBE-HHHHHHHH
T ss_pred cccCCCCcccccccccccccccccCCCCEEEEEEEcCCcHHHHHHHHHHHHh-hCCCcEEEEEeCCccCHHHHHHhC
Confidence 00 11 2335699999999999999999999543 335699999999999999999986
No 3
>KOG1299 consensus Vacuolar sorting protein VPS45/Stt10 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-32 Score=295.77 Aligned_cols=414 Identities=19% Similarity=0.242 Sum_probs=289.8
Q ss_pred eEEEEeeceeeccCCCCeecccCCchhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHhcCCcc
Q 003965 203 VVSVHHFPMILCPLSPRVFVLPSEGSVAEACLSVEHEDSLSPVLPPIGTGLFSDGDDVPPGAILTAHLIYHLASKMDLKM 282 (783)
Q Consensus 203 ~v~V~~~Pl~~~pl~~~lf~lp~~~s~~~~~l~~~~~~sl~p~lPp~~~g~~~d~d~lp~~~~lla~~L~~L~~~l~l~~ 282 (783)
+-+|.++=+-|.++.|++|++-..+.+... +. . -|.++.-....+-.|.-.|+.+|
T Consensus 119 V~eVqE~y~Df~~~n~~Lfsln~p~~~~~~-~~-------------------w----~~~~l~R~~~GI~AllLsLK~~P 174 (549)
T KOG1299|consen 119 VREVQEIYLDFFKVNPDLFSLNIPHIFESS-LN-------------------W----DPGALTRSTQGIIALLLSLKKKP 174 (549)
T ss_pred HHHHHHHHHhhhccCCceeecCCchhhccc-cc-------------------c----ChhhhhHhHhhHHHHHHhccCCC
Confidence 467888889999999999999865544221 00 0 12345555666777777889999
Q ss_pred eeeecC--chhHHHHHHHh-hhhhhhh---ccccCCceeEEEEecccccccCCC---CCCchHHHHhhcCCCCCCccccc
Q 003965 283 EIFSLG--DLSKNVGKLLT-DMSSLYD---VGRRKRTAGLLLVDRTFDLLTPCC---HGDSLVDRMFSSLPRRKRTAFYA 353 (783)
Q Consensus 283 ~if~~G--~~Sr~Ia~~l~-~m~~~~~---a~~~k~~asLIlVDRtlDl~tp~~---h~e~LlDri~~~Lpr~~~~~~~~ 353 (783)
.|..-+ +...++|+.+. +|+.+.. -.+...+.-|+++||.-|.+||+. +|...+.+.+++-
T Consensus 175 ~IRYq~~S~~~~~lAe~vs~~i~~E~~lFdfr~~~~~p~LLiLDR~~DpvTPLL~qWTYQaMvHEl~gi~---------- 244 (549)
T KOG1299|consen 175 VIRYQTSSRACKRLAEEVSYRITKESTLFDFRRTDSPPLLLILDRRDDPVTPLLNQWTYQAMVHELLGIK---------- 244 (549)
T ss_pred eeEeecCCHHHHHHHHHHHHHHhhhhhhcccccCCCCCeEEEEecCCCCCchhhhHHHHHHHHHHHhccc----------
Confidence 887654 45566666442 3343211 112223557999999999999997 9999999999982
Q ss_pred cccCCccccccCCCCcCCCCceeeeeccccccccccccccccccchhhhhhccccccCCCcchhcccccccccccCCccc
Q 003965 354 HIKGSQSRAKLGSSSVQRSPVEVQIPLAKILSEEDSKLDDSRLQGNIEAFLRGWDAYNSSSEVVDLSLSSEIELLSGSFV 433 (783)
Q Consensus 354 ~~~~~~~~~~~~~~~~~r~~~dV~v~m~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~G~l~ 433 (783)
+=.|+++..-+..+ +.. ++ . |-
T Consensus 245 ---------------------nnrvdls~~~~~~k-d~~-------------------------------ev-v----LS 266 (549)
T KOG1299|consen 245 ---------------------NNRVDLSKVPSIPK-DLE-------------------------------EV-V----LS 266 (549)
T ss_pred ---------------------cCEEeeccCCCCcc-ccc-------------------------------ee-e----ec
Confidence 11233333211000 000 01 0 11
Q ss_pred ccCCCCChhHHHHHHhhhhhhHHHHHHHHHHHHHHhcCCCcccccCCCCCCHHHHHHHHHHHhhCHH---HHHhhhhHHH
Q 003965 434 STENFRGTPYMEALLDRRMKDGTVLIKKWLQEALRQENLTVNVRSRPGSATKSELQAMIKALAKNQS---SLVRNRGIIQ 510 (783)
Q Consensus 434 ~~~~~~~~~lweaLl~k~~kd~~~~V~k~L~Ea~~~E~l~~~ik~~~G~vT~~eL~~lik~l~~~~~---~l~kh~g~LQ 510 (783)
..+| +|+..-+...+.|.-+.||..+.++-.+.+-..++. ++.++..+++..|++.| .+.||..+.-
T Consensus 267 ~~~D----~Ff~~nmy~NfgEiG~~IK~lv~~fq~k~~~~~~ie------si~Dmk~Fve~YPefkkmSG~VsKHv~lvg 336 (549)
T KOG1299|consen 267 SEQD----PFFKNNMYANFGEIGSNIKQLVSEFQFKTKTNSNIE------SIADMKNFVEDYPEFKKMSGNVSKHVALVG 336 (549)
T ss_pred cccc----hHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhchhhh------hHHHHHHHHHhcHHHhhhhhhHHHHHHHHH
Confidence 1223 799999999999999999999999988666554444 88899999999887654 5666655443
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHhhhcccchHhHHHHHHHhhccCccCCCCccchhhhhhcccCCCHHHHHHHHhh
Q 003965 511 FATAALAALDESHSARWDAFISAEKMLHVSAEDTSQSLAAQIGDLINKSCLVGSHDQKTRKMELSSRLLSFKDALLLTVT 590 (783)
Q Consensus 511 La~A~~qaL~~~~~s~wd~l~s~Eq~L~~s~~dgs~s~~~ql~~lI~~~~s~~~~~~~~~~~~~~~~~ls~ddiL~Lll~ 590 (783)
- .++..+. ...-.+..+||.|. +.++...-.+-|..||+... .|..|++.| +.
T Consensus 337 E---ls~lv~~---~nL~evSEvEQ~l~--c~~~~~~~~~~i~~LL~n~~------------------vs~~d~lrL-v~ 389 (549)
T KOG1299|consen 337 E---LSKLVQR---RNLLEVSEVEQNLA--CNGDHGADFNDIKKLLQNEK------------------VSEIDRLRL-VA 389 (549)
T ss_pred H---HHHHHHH---hhhhhHHHHHHHHH--hcCcchhhHHHHHHHHcCCc------------------ccHHHHHHH-HH
Confidence 3 3333221 12334667788875 22222334567888887543 788888886 78
Q ss_pred hhhccCcCCCCCCCCCCCChHHHHHHHHHHHHHHhcCCCcchh-hhhhhhhchhchhhhh-HhhhhhhHHhhhhhhhhcc
Q 003965 591 GYILAGENFPTSGSGGPFSWQEEHFLKEAIVDAIFENPSEAKF-KFLHEQQYNDMQLKLE-LQDRVDNLFKFLHKVSGLK 668 (783)
Q Consensus 591 iyslaGe~~~~~~~~~~fs~~~E~~L~kaL~~ail~~~~~~~l-~~l~~~~~~~~~L~~e-~~~r~~~lf~~l~~~s~~r 668 (783)
+|+|..|..|. -.+.++++......+....+ .|+ ++.- .+.|.+|+|+....+..+|
T Consensus 390 lYaLr~e~~~~------------~~~~~L~~~l~~~~~~~~~~v~~l---------l~~~G~~~R~~dlf~~~~~v~i~R 448 (549)
T KOG1299|consen 390 LYALRYERHPP------------NELRQLPQILREQGPKKPELVPFL---------LKYAGLHVRQGDLFGPNDLVPIAR 448 (549)
T ss_pred HHHHHhccCCh------------HHHHHHHHHHHhcCCCcchhHHHH---------HHhcCcccccccccCcchhHHHHH
Confidence 99999997432 34555555444455542222 222 1121 6788999999888889999
Q ss_pred ccccCCCCCCCCCCCcccccCccccccHHHHHHHHh-cCCCCCCCCCCCCC-CCCCcCCCCeEEEEEECCcCHHHHHHHH
Q 003965 669 RKNIPLRDSAFGSDSHFHGDSYASKGLLYKLLMKVL-AKSDVPGLEYHSST-AKPSLADQNVILIFVIGGINGLEVHEAL 746 (783)
Q Consensus 669 ~~~k~lr~~~~~~~n~y~q~~~rh~PlL~~~le~l~-~k~d~p~~~~~s~~-~~~~p~d~~~iIVFVVGGvTyeE~R~v~ 746 (783)
+..|++++ +||||+| |.|+|+++|++++ ||++-+++|+.++. ++.+||| ||||||||+||||+|.|+
T Consensus 449 ~~~kglkg----vENVytQ----H~P~lk~~l~~~~rgRl~~~~~p~l~~~~s~~~pq~---IIVfivGGaTYEEa~~V~ 517 (549)
T KOG1299|consen 449 RFIKGLKG----VENVYTQ----HQPLLKSTLEDLFRGRLKEIDYPFLGSQTSRDRPQD---IIVFIVGGATYEEARVVH 517 (549)
T ss_pred HHhhccCc----chhhhhc----cCHHHHHHHHHHHhcccccCCCcccccccccCCCce---EEEEEECCccHHHHHHHH
Confidence 99999987 6999999 9999999999999 99877777776543 5678888 999999999999999999
Q ss_pred HHhhccCCCCcEEEEccccccChhHHHHHhhcC
Q 003965 747 EALSESGRPDLELILGGTTLLTPADMFDLLLGD 779 (783)
Q Consensus 747 e~~~~s~~~~~~VilGgT~ilnp~~fl~~l~~~ 779 (783)
++|. .++|++||+|||+|||+++|++++.+.
T Consensus 518 ~~N~--tn~g~rvvLgGttvlntk~f~~di~~a 548 (549)
T KOG1299|consen 518 ELNA--TNPGVRVVLGGTTVLNTKSFIDEIMAA 548 (549)
T ss_pred HHhc--CCCceEEEEcceEEechHHHHHHHhcc
Confidence 9964 489999999999999999999999864
No 4
>COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion]
Probab=99.94 E-value=8.7e-24 Score=241.31 Aligned_cols=541 Identities=18% Similarity=0.202 Sum_probs=327.6
Q ss_pred CchhhHHHHHHhHHHHHHHHhh----ccEEEecCcchhhhhhcCCHHHHHhhccccccccccCCCccccccccCCCCCCc
Q 003965 1 MALLDVTKSCIDSIKQISEHIK----DAILYLDSGCTESFQLIGAFPVLLELGVRAVCCLENMSPLDSVVDWNSNIDPMR 76 (783)
Q Consensus 1 m~~~d~~~~~~~~~~~v~~~v~----gavvylD~g~~E~l~w~gg~~~Lle~Ga~~V~~L~~~s~~d~~~~~~~~~~~~~ 76 (783)
|++.++.+ .-+.+....|+ .-|+=+|.-.+..+--.=--+.||+-|+..|-.+++- +. ....-
T Consensus 2 ~dl~e~q~---~~i~~~i~~v~~~n~~KvLllD~~t~~ils~~~~~s~lle~~I~~~~~i~~~---R~-------~~~~~ 68 (582)
T COG5158 2 MDLLELQK---NKILDEIFLVQPANIWKVLLLDKDTTSILSSLITTSELLEHGITLVDLIENK---RE-------PISDL 68 (582)
T ss_pred ccHHHHHH---HHHHHHHHhcCCCcceEEEEEecchHHHHHhhcchHHHHhcCceEEEeecCC---CC-------CCCCC
Confidence 44445544 45556666666 4599999999999877777889999999999888663 11 22234
Q ss_pred eEEEEEccccchhHHHHHHHHHhcCCcc--EEEEEeecChhhhcccCCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCC
Q 003965 77 KMVVMTSRLLSDAHRYIVRCLSASYGIR--HCAIFTSISEIAHSAYTDSPLGPDAFHEYETLLLQDYEELVRKRQTKSGQ 154 (783)
Q Consensus 77 k~V~i~s~lL~~~~~~ilr~l~~~~~~~--~c~V~tsvSe~aH~~~~~~~l~~~a~~e~~~~~~~~~ee~~~~~~~~~~~ 154 (783)
+++.++.. .....+-|++++...+.|. +-+.|+-+ +.+++.|.+.+.+
T Consensus 69 ~aiy~v~p-t~e~i~~i~~D~~~~~~~Y~~~~~~f~~~------------------------~~~~l~e~l~es~----- 118 (582)
T COG5158 69 PAIYFVRP-TKENIDLILEDLEQWDPFYLNYHISFLNT------------------------VTESLLELLAESG----- 118 (582)
T ss_pred CEEEEEcC-chHHHHHHHHHHhccCccccceeEEeccc------------------------chHHHHHHHhhcC-----
Confidence 66666655 5566666777776532222 22222222 2344555443321
Q ss_pred CCcccccccccccCCCccccCCCCCcccccccCCCCccccccccCCcceEEEEeeceeeccCCCCeecccCCchhhhhhc
Q 003965 155 SEDTGFQKRLTFEDDGWSHLTSSEEDTSTFEASSSGKDFYKEDVGQELVVSVHHFPMILCPLSPRVFVLPSEGSVAEACL 234 (783)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~V~~~Pl~~~pl~~~lf~lp~~~s~~~~~l 234 (783)
...| .-+|..+++.|.++++++|.+-....+-.+.+
T Consensus 119 ----------------~~~~----------------------------i~~V~e~~ldf~~le~dlfsl~~p~~~~~~~~ 154 (582)
T COG5158 119 ----------------VFEK----------------------------ILSVYEIYLDFFVLESDLFSLNLPESFLESSL 154 (582)
T ss_pred ----------------chhh----------------------------eeeeeeeecceEEechHhHhhcCchhhhhhcC
Confidence 1111 36788999999999999999988554433211
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHhcCCcceeeecC-chhHHHHHHHh-hhhhhhhcc----
Q 003965 235 SVEHEDSLSPVLPPIGTGLFSDGDDVPPGAILTAHLIYHLASKMDLKMEIFSLG-DLSKNVGKLLT-DMSSLYDVG---- 308 (783)
Q Consensus 235 ~~~~~~sl~p~lPp~~~g~~~d~d~lp~~~~lla~~L~~L~~~l~l~~~if~~G-~~Sr~Ia~~l~-~m~~~~~a~---- 308 (783)
.. .+ ..+.-++++|.+++-.+|-+|.|.+-| +.+..+|+.++ ++++.....
T Consensus 155 ~~--------------------~~---~~~~~~v~gl~S~~~slg~~P~Ir~~~~~~a~~~ak~l~~~~~~~~~~~~~~~ 211 (582)
T COG5158 155 PS--------------------TT---EALIKIVNGLFSLCVSLGRIPIIRYSGGKNAEHMAKKLSDEIRNELSINFDGV 211 (582)
T ss_pred CC--------------------ch---HHHHHHHhhHHHHHhhcCCcceEEecCCchHHHHHHHHHHHHHHHHHhhcccc
Confidence 11 00 022236999999999999999998777 88888887664 444333222
Q ss_pred ccCC--ceeEEEEecccccccCCC---CCCchHHHHhhcCCCCCCccccccccCCccccccCCCCcCCCCceeeeecccc
Q 003965 309 RRKR--TAGLLLVDRTFDLLTPCC---HGDSLVDRMFSSLPRRKRTAFYAHIKGSQSRAKLGSSSVQRSPVEVQIPLAKI 383 (783)
Q Consensus 309 ~~k~--~asLIlVDRtlDl~tp~~---h~e~LlDri~~~Lpr~~~~~~~~~~~~~~~~~~~~~~~~~r~~~dV~v~m~~l 383 (783)
..+. ...|||+||++|+.||+. +|-++++.++.+= .+-|.+|.+..
T Consensus 212 ~~~~~~~~~LIIlDRs~D~iTPlLh~wTYqaml~Dl~~~~-----------------------------~~~v~~~~~~~ 262 (582)
T COG5158 212 VSKNPLRPILIILDRSLDPITPLLHQWTYQAMLHDLLGIN-----------------------------NNIVTIPSSSV 262 (582)
T ss_pred cccCCCCceEEEEecCCCcccchHHHHHHHHHHHHHHHhh-----------------------------cCeEEeccccc
Confidence 1222 558999999999999986 8899999999981 02444443332
Q ss_pred ccccccccccccccchhhhhhccccccCCCcchhcccccccccccCCcccccCCCCChhHHHHHHhhhhhhHHHHHHHHH
Q 003965 384 LSEEDSKLDDSRLQGNIEAFLRGWDAYNSSSEVVDLSLSSEIELLSGSFVSTENFRGTPYMEALLDRRMKDGTVLIKKWL 463 (783)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~~~lweaLl~k~~kd~~~~V~k~L 463 (783)
-. . ... =.+..++| .+|++..+.++-|+...|++.+
T Consensus 263 ~g--~--~kk------------------------------------~~~~~~~D----~~w~~~k~~~f~~v~e~l~~~~ 298 (582)
T COG5158 263 NG--P--EKK------------------------------------FSLSDKDD----PFWNDNKFLNFGEVGEKLKKLA 298 (582)
T ss_pred cc--c--cce------------------------------------eccCCccc----HhHHHhccCchhhHHHHHHHHH
Confidence 00 0 000 01222344 7999999999999999999999
Q ss_pred HHHHHhcCCCcccccCCCCCCHHHHHHHHHHHhhCHHHHHhhhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHhhhccc
Q 003965 464 QEALRQENLTVNVRSRPGSATKSELQAMIKALAKNQSSLVRNRGIIQFATAALAALDESHSARWDAFISAEKMLHVSAED 543 (783)
Q Consensus 464 ~Ea~~~E~l~~~ik~~~G~vT~~eL~~lik~l~~~~~~l~kh~g~LQLa~A~~qaL~~~~~s~wd~l~s~Eq~L~~s~~d 543 (783)
++...+.... .+....+..++++++.+++..++.-..-..|+.++.+|+++++. ...+.|-.+||.|......
T Consensus 299 ~~l~~~~~~~----~~~~~~s~~dik~~v~~lpel~~~~~~l~~H~~l~~e~l~~~~~---~~l~~f~eIEq~l~~~~~~ 371 (582)
T COG5158 299 KELKTKAQLR----HKENAKSVNDIKEFVDKLPELQKRSRSLNKHLTLASELLKVVEE---RYLDDFSEIEQNLSTGNDV 371 (582)
T ss_pred HHHHHHHhhh----hhhhcccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhcCCcc
Confidence 9987644322 11234699999999999998888777778889999999999874 4688899999999632222
Q ss_pred chHhHHHHHHHhhccCccCCCCccchhhhhhcccCCCHHHHHHHHhhhhhccCcCCCCCCCCCCCChHHHHHHHHHHHHH
Q 003965 544 TSQSLAAQIGDLINKSCLVGSHDQKTRKMELSSRLLSFKDALLLTVTGYILAGENFPTSGSGGPFSWQEEHFLKEAIVDA 623 (783)
Q Consensus 544 gs~s~~~ql~~lI~~~~s~~~~~~~~~~~~~~~~~ls~ddiL~Lll~iyslaGe~~~~~~~~~~fs~~~E~~L~kaL~~a 623 (783)
+ ..+.++|+--. .....++.|+| +.+|++....- ..+....+++
T Consensus 372 --~---~~i~Dli~~l~----------------~~~~E~~klRl-lilysL~~~~~-----------~~~~~~~~~l--- 415 (582)
T COG5158 372 --K---SDISDLIELLE----------------SGVEEDDKLRL-LILYSLTKDGL-----------IKDIDELRLL--- 415 (582)
T ss_pred --h---hhHHHHHHHHh----------------cCchHHHHHHH-HHHHHHhcCcc-----------hhHHHHHHHH---
Confidence 3 33555555322 11223335554 34677776541 0111111111
Q ss_pred HhcCCCcchhhhhhh----hhchhchhhhhHhhhh--hhHHhhhhhhhhccccccCCCCCCCCCCCcccccCccccccHH
Q 003965 624 IFENPSEAKFKFLHE----QQYNDMQLKLELQDRV--DNLFKFLHKVSGLKRKNIPLRDSAFGSDSHFHGDSYASKGLLY 697 (783)
Q Consensus 624 il~~~~~~~l~~l~~----~~~~~~~L~~e~~~r~--~~lf~~l~~~s~~r~~~k~lr~~~~~~~n~y~q~~~rh~PlL~ 697 (783)
+...-....++|... +.+..++++.....+- +.+|.-.+..+..|.. +.+ -...++|.| |.|+++
T Consensus 416 ~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~s~~~g~~d~l~~~~n~y~~s~~~-~~~----~~~~~v~~~----~iP~~k 486 (582)
T COG5158 416 RIQGYGIEALNFFQRLKELGFLTLKDSKTISLKRGDKDSLFQWFNTYSLSREH-QGV----PDLENVYSG----LIPLKK 486 (582)
T ss_pred HhcCCCHHHHHHHHHHHHHhhhhhhcccccccccCCcccccCccccccccccc-CCC----chHHHHHHh----hcchhc
Confidence 111111111111100 0000000000000000 1122212222222111 111 123577887 999999
Q ss_pred HHHHHHh-cCCCCCCCCCCCCC---CCCC-------cCCCCeEEEEEECCcCHHHHHHHHHHhhccCCCCcEEEEccccc
Q 003965 698 KLLMKVL-AKSDVPGLEYHSST---AKPS-------LADQNVILIFVIGGINGLEVHEALEALSESGRPDLELILGGTTL 766 (783)
Q Consensus 698 ~~le~l~-~k~d~p~~~~~s~~---~~~~-------p~d~~~iIVFVVGGvTyeE~R~v~e~~~~s~~~~~~VilGgT~i 766 (783)
++.-+++ ++...|.......+ .+++ -...++++||||||+||+|.|.+|+++.. .++.+||+|||.|
T Consensus 487 ~~~~~~~~~~~~~~~~s~~~~s~~~~~~k~~~~~~~~~~~~~~~VfviGG~ty~E~~~~~e~~~~--~~~~~ii~Gst~i 564 (582)
T COG5158 487 DIPIDLLVRRLFEPLKSSQQQSLRLSRPKGRSRSNKKIPQQRILVFVIGGVTYEELRVLYELNES--QNSVRIIYGSTEI 564 (582)
T ss_pred ccchhhhhhhhcccccchhccceeecccccccccccccccceEEEEEECCeehHHHHHHHHHHhh--cCCeeEEEcCCce
Confidence 9998888 54433332222101 1111 11336799999999999999999999542 3338999999999
Q ss_pred cChhHHHHHhhc
Q 003965 767 LTPADMFDLLLG 778 (783)
Q Consensus 767 lnp~~fl~~l~~ 778 (783)
+||.+|++.+-.
T Consensus 565 ltp~e~l~~v~~ 576 (582)
T COG5158 565 LTPAEFLDEVKR 576 (582)
T ss_pred ecHHHHHHHHHH
Confidence 999999998754
No 5
>KOG1302 consensus Vacuolar sorting protein VPS33/slp1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.6e-23 Score=236.19 Aligned_cols=537 Identities=18% Similarity=0.247 Sum_probs=337.4
Q ss_pred HHHHHHhHHHHHHHHhhcc-EEEecCcchhhhhhcCCHHHHHhhccccccccccCCCccccccccCCCCCCceEEEEEcc
Q 003965 6 VTKSCIDSIKQISEHIKDA-ILYLDSGCTESFQLIGAFPVLLELGVRAVCCLENMSPLDSVVDWNSNIDPMRKMVVMTSR 84 (783)
Q Consensus 6 ~~~~~~~~~~~v~~~v~ga-vvylD~g~~E~l~w~gg~~~Lle~Ga~~V~~L~~~s~~d~~~~~~~~~~~~~k~V~i~s~ 84 (783)
+....++-.-++.+.+.|. .+++|.-=.=.|--..+...|.+.|++....+++--. |+ ...+++|||+-.
T Consensus 17 lq~~a~~eL~~lLds~pG~K~lvlD~dL~~pL~~ia~~s~Lk~hgV~~~~~l~~~~~------~~---~~~~~~vy~~Rp 87 (600)
T KOG1302|consen 17 LQEVARRELISLLDSLPGKKELVLDPDLMGPLGLIATASLLKEHGVRRLLHLDAEKS------PN---SEVKQVVYFVRP 87 (600)
T ss_pred HHHHHHHHHHHHHhcCCCceeEEecccccchhhccccHHHHHHhCcHHhhccCcccC------cc---cccCeEEEEEcC
Confidence 4444567777888888886 7889987666677777889999999998888865221 22 234678888877
Q ss_pred ccchhHHHHHHHHHh----cCCccEEEEEeecChhhhcccCCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCCcccc
Q 003965 85 LLSDAHRYIVRCLSA----SYGIRHCAIFTSISEIAHSAYTDSPLGPDAFHEYETLLLQDYEELVRKRQTKSGQSEDTGF 160 (783)
Q Consensus 85 lL~~~~~~ilr~l~~----~~~~~~c~V~tsvSe~aH~~~~~~~l~~~a~~e~~~~~~~~~ee~~~~~~~~~~~~~~~~~ 160 (783)
.+.-. +.|+..+-. -..-+||+||....+. .++..++..
T Consensus 88 ~~~~~-~~ia~~v~~~~~d~~~r~~~vi~~P~~~~------------------------~c~~~Lee~------------ 130 (600)
T KOG1302|consen 88 RLENM-QLIAEHVENVQRDGFTRDYHVIFVPRRSS------------------------LCETLLEEE------------ 130 (600)
T ss_pred chHHH-HHHHHHHhhhhhchhcceeEEEEeccHHH------------------------HHHHHHHhc------------
Confidence 66655 666665544 3344567777654211 233332211
Q ss_pred cccccccCCCccccCCCCCcccccccCCCCccccccccCCcceEEEEeeceeeccCCCCeecccCCchhhhhhccccccc
Q 003965 161 QKRLTFEDDGWSHLTSSEEDTSTFEASSSGKDFYKEDVGQELVVSVHHFPMILCPLSPRVFVLPSEGSVAEACLSVEHED 240 (783)
Q Consensus 161 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~V~~~Pl~~~pl~~~lf~lp~~~s~~~~~l~~~~~~ 240 (783)
+. ++ .+.+.++|+.+.||+.|+++++...++.++|
T Consensus 131 ---------gv--------~~---------------------~v~~~e~~~~~lpld~DllSlEl~~~~~d~~------- 165 (600)
T KOG1302|consen 131 ---------GV--------YG---------------------LVLVEEQILDLLPLDGDLLSLELPNSFLDLY------- 165 (600)
T ss_pred ---------cc--------cc---------------------ccccchhhhhhccccccchhccchHHHHHHh-------
Confidence 12 11 2889999999999999999999988886543
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHhcCCcceeeecCchhHHHHHHHhhhhhhhhcc-ccCC--ceeEE
Q 003965 241 SLSPVLPPIGTGLFSDGDDVPPGAILTAHLIYHLASKMDLKMEIFSLGDLSKNVGKLLTDMSSLYDVG-RRKR--TAGLL 317 (783)
Q Consensus 241 sl~p~lPp~~~g~~~d~d~lp~~~~lla~~L~~L~~~l~l~~~if~~G~~Sr~Ia~~l~~m~~~~~a~-~~k~--~asLI 317 (783)
.|||. +.++..|.+|+.|+.-+|..+.||++|+.|+++++++..|-.+.... .... .-.||
T Consensus 166 --------------~~gd~--s~l~~va~~l~~LQ~~~G~ip~v~g~G~~ak~~~~l~~~l~~e~~t~n~~~~~~~~~li 229 (600)
T KOG1302|consen 166 --------------LDGDQ--SSLYHVADALVSLQRLYGIIPKVYGKGECAKRVWELLKKLEREEATENNGDRPEIDHLI 229 (600)
T ss_pred --------------hcccc--chhHHHHHHHHHHHHhhCCCcceeeccHHHHHHHHHHHHHhhccccccCCCccccceEE
Confidence 34443 67888999999999999999999999999999999988877765443 2222 23799
Q ss_pred EEecccccccCCC---CCCchHHHHhhcCCCCCCccccccccCCccccccCCCCcCCCCceeeeeccccccccccccccc
Q 003965 318 LVDRTFDLLTPCC---HGDSLVDRMFSSLPRRKRTAFYAHIKGSQSRAKLGSSSVQRSPVEVQIPLAKILSEEDSKLDDS 394 (783)
Q Consensus 318 lVDRtlDl~tp~~---h~e~LlDri~~~Lpr~~~~~~~~~~~~~~~~~~~~~~~~~r~~~dV~v~m~~l~~~~~~~~~~~ 394 (783)
|+||.+|++||++ +|+||+|+||++ -+ ..|.+|-+..-..+..+..
T Consensus 230 LlDR~~D~vtpLlTQltYeGLLDEiy~I------~~-----------------------g~vk~p~~~~~~~q~g~~~-- 278 (600)
T KOG1302|consen 230 LLDRDVDPVTPLLTQLTYEGLLDEIYGI------SS-----------------------GNVKLPSENFKRNQAGDLG-- 278 (600)
T ss_pred EEeccCcccchhhhHHHHHHHHHHHhhc------cC-----------------------CeEecChHHccchhcCCCc--
Confidence 9999999999987 999999999998 11 2366665443322221100
Q ss_pred cccchhhhhhccccccCCCcchhcccccccccccCCcccccCCCCChhHHHHHHhhhhhhHHHHHHHHHHHHHHhcCCCc
Q 003965 395 RLQGNIEAFLRGWDAYNSSSEVVDLSLSSEIELLSGSFVSTENFRGTPYMEALLDRRMKDGTVLIKKWLQEALRQENLTV 474 (783)
Q Consensus 395 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~~~lweaLl~k~~kd~~~~V~k~L~Ea~~~E~l~~ 474 (783)
-|| -++...-.. ..-..|..++++|+..+.-.+.|..++.-.+.-
T Consensus 279 ----------~~~--------------------~~~~~~l~~--~~deIy~eiR~k~f~~v~~~lsk~ak~l~~~~~--- 323 (600)
T KOG1302|consen 279 ----------KGK--------------------TEKKIVLLY--SSDEIYAEIRNKHFNAVGPLLSKKAKELQAQYE--- 323 (600)
T ss_pred ----------cCc--------------------cccceeccC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 011 112222111 134899999999999999888888877754322
Q ss_pred ccccCCCCCCHHHHHHHHHHHh---hCHHHHHhhhhHHHHHHHHHHHhcccchhHHHHHHHHHHHH-hhhcccchHhHHH
Q 003965 475 NVRSRPGSATKSELQAMIKALA---KNQSSLVRNRGIIQFATAALAALDESHSARWDAFISAEKML-HVSAEDTSQSLAA 550 (783)
Q Consensus 475 ~ik~~~G~vT~~eL~~lik~l~---~~~~~l~kh~g~LQLa~A~~qaL~~~~~s~wd~l~s~Eq~L-~~s~~dgs~s~~~ 550 (783)
.+--..|..|+..+|++|+ +-++.+.+|. .+|+-+++.-+. ....+++.+|+.| ++++.+.. ..
T Consensus 324 ---~r~~~~sV~Eik~FV~~Lp~L~~~~~~l~~H~---~lae~i~~~v~~---~~f~~~l~lE~ell~~~d~~k~---~~ 391 (600)
T KOG1302|consen 324 ---TRRQAMSVAEIKDFVSKLPKLQQRKKSLERHT---NLAEMIMQHVKN---EDFRKLLKLEHELLEGNDSDKD---FD 391 (600)
T ss_pred ---hhhccCcHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhh---HHHHHHHHHHHHHHhccCcccc---hH
Confidence 1223459999999999766 4556777664 555556666442 4478899999986 54444433 56
Q ss_pred HHHHhhccCccCCCCccchhhhhhcccCCCHHHHHHHHhhhhhccCcCCCCCCCCCCCChHHHHHHHHHHHHH-------
Q 003965 551 QIGDLINKSCLVGSHDQKTRKMELSSRLLSFKDALLLTVTGYILAGENFPTSGSGGPFSWQEEHFLKEAIVDA------- 623 (783)
Q Consensus 551 ql~~lI~~~~s~~~~~~~~~~~~~~~~~ls~ddiL~Lll~iyslaGe~~~~~~~~~~fs~~~E~~L~kaL~~a------- 623 (783)
.|-++|-.. .+..++|+| +.+.|+.....+ .++=+.++.-+.+.
T Consensus 392 ~IeElI~~~-------------------~~~~~vLRL-icL~Slt~~Gl~---------~k~l~~~rr~~lqsYG~ehl~ 442 (600)
T KOG1302|consen 392 YIEELIYQE-------------------VPLNNVLRL-ICLLSLTCNGLK---------PKDLDHYRREYLQSYGYEHLL 442 (600)
T ss_pred HHHHHHhhc-------------------ccHHHHHHH-HHHHHHHhcCCC---------HHHHHHHHHHHHHhhhHHHHH
Confidence 677777754 477888886 556677544321 11111122222111
Q ss_pred ---HhcCCCcchhhhhhhhhchhchhhhhHhhhhhhHHhhhhhhhhccccccCCCCCCCCCCCcccccC---ccccccHH
Q 003965 624 ---IFENPSEAKFKFLHEQQYNDMQLKLELQDRVDNLFKFLHKVSGLKRKNIPLRDSAFGSDSHFHGDS---YASKGLLY 697 (783)
Q Consensus 624 ---il~~~~~~~l~~l~~~~~~~~~L~~e~~~r~~~lf~~l~~~s~~r~~~k~lr~~~~~~~n~y~q~~---~rh~PlL~ 697 (783)
.++... +|-...... .+..+. ..+.++..++..+-+.+ -..+...+... ++|.|+.-
T Consensus 443 tl~nL~kaG-----Ll~~q~~~~-~~~~~~---------~~~~~st~~ntl~l~~~--~~d~~~p~DiaYvySgy~PLs~ 505 (600)
T KOG1302|consen 443 TLQNLEKAG-----LLREQTGGR-KLHTKS---------SKRNYSTWANTLPLVDE--ENDESNPSDIAYVYSGYAPLSC 505 (600)
T ss_pred HHHHHHHcC-----CcccccCCC-cchhhH---------HHHHHHHHHhcCCCcCC--cccccCcccchhhhcccccHHH
Confidence 011111 110000000 000000 00122333333333332 11122211111 26999999
Q ss_pred HHHHHHhcC---C-------CCCCCCCCCCC-------CCC-CcCCCCeEEEEEECCcCHHHHHHHHHHhhccCCCCcEE
Q 003965 698 KLLMKVLAK---S-------DVPGLEYHSST-------AKP-SLADQNVILIFVIGGINGLEVHEALEALSESGRPDLEL 759 (783)
Q Consensus 698 ~~le~l~~k---~-------d~p~~~~~s~~-------~~~-~p~d~~~iIVFVVGGvTyeE~R~v~e~~~~s~~~~~~V 759 (783)
++++++++. . ..|+..+-... ++- .|...+.+.||++||+||.|+-+++.+ . ...|.|+
T Consensus 506 rlve~~l~~~~w~~~~~~i~~l~g~~~e~~~~~~~~~~~~~~~~g~~R~~lVff~GG~T~~EIAalr~l-~--~~~~~~f 582 (600)
T KOG1302|consen 506 RLVEDLLKRRGWQELYSKIRNLPGPHFEEVTWTPSDIASKNNSPGALRVTLVFFLGGCTYAEIAALRFL-A--KLEGYRF 582 (600)
T ss_pred HHHHHHhcccchhhhHHHHccCCCCchhhcccChhhhcccccCCCCcceEEEEEECCccHHHHHHHHHH-H--hhcCceE
Confidence 999999942 1 12221111110 111 233356789999999999999999988 4 2567999
Q ss_pred EEccccccChhHHHHHh
Q 003965 760 ILGGTTLLTPADMFDLL 776 (783)
Q Consensus 760 ilGgT~ilnp~~fl~~l 776 (783)
+|-.|.+.|-.++++-+
T Consensus 583 ~i~Tt~ling~~ll~~~ 599 (600)
T KOG1302|consen 583 LIATTGLINGSSLLEAI 599 (600)
T ss_pred EEEeccccchHHHHHhh
Confidence 99999999999999865
No 6
>KOG1301 consensus Vesicle trafficking protein Sly1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=3.4e-12 Score=142.49 Aligned_cols=421 Identities=16% Similarity=0.204 Sum_probs=235.0
Q ss_pred eceeeccCCCCeecccCCchhhhhhcccccccCCCCCCCCCCCCCCCCCCC-CCCchHHHHHHHHHHHHhcCCcceeee-
Q 003965 209 FPMILCPLSPRVFVLPSEGSVAEACLSVEHEDSLSPVLPPIGTGLFSDGDD-VPPGAILTAHLIYHLASKMDLKMEIFS- 286 (783)
Q Consensus 209 ~Pl~~~pl~~~lf~lp~~~s~~~~~l~~~~~~sl~p~lPp~~~g~~~d~d~-lp~~~~lla~~L~~L~~~l~l~~~if~- 286 (783)
-=|.|.-|++|+|+|-...++... . .+.-.+. ++.-..-+|..|...+--||.-|=|.+
T Consensus 147 QYlnFI~LEddlFsL~~~~~~~~~--n-----------------~p~t~e~ei~~~~~~IvdgLF~v~vTlG~VPiIRcp 207 (621)
T KOG1301|consen 147 QYLNFIVLEDDLFSLGMQNSFHAI--N-----------------RPSTTEEEINALMDRIVDGLFSVFVTLGEVPIIRCP 207 (621)
T ss_pred hHhhheeecchhhhhcccccchhc--c-----------------CCCchHHHHHHHHHHHHHHHHHHheecccceeEECC
Confidence 347788999999999998877221 0 0111111 223334478999999999999987764
Q ss_pred cCchhHHHHHHHh-hhhhhh-hccc----------cCCceeEEEEecccccccCCC---CCCchHHHHhhcCCCCCCccc
Q 003965 287 LGDLSKNVGKLLT-DMSSLY-DVGR----------RKRTAGLLLVDRTFDLLTPCC---HGDSLVDRMFSSLPRRKRTAF 351 (783)
Q Consensus 287 ~G~~Sr~Ia~~l~-~m~~~~-~a~~----------~k~~asLIlVDRtlDl~tp~~---h~e~LlDri~~~Lpr~~~~~~ 351 (783)
.|..+..||+.|. .|+.-. +++. .-...=|||+||+.||+||++ +|--|+.-+|.. +.
T Consensus 208 ~g~aAEmvA~kL~qKLRd~l~d~k~~lft~~~~~~~~~RPvLvl~DRn~Dlat~l~HtWtYqaLvhDvl~l------~l- 280 (621)
T KOG1301|consen 208 KGGAAEMVARKLDQKLRDNLRDTKNNLFTMDGGGAGFQRPVLVLLDRNIDLATPLHHTWTYQALVHDVLDL------EL- 280 (621)
T ss_pred CCCHHHHHHHHHHHHHHHHhHhhcccceeccCcccCCCCceEEEEecccccccccccceehHHHHHHHHhc------cc-
Confidence 7999999999874 333321 1211 112346999999999999997 568898888876 11
Q ss_pred cccccCCccccccCCCCcCCCCceeeeeccccccccccccccccccchhhhhhccccccCCCcchhcccccccccccCCc
Q 003965 352 YAHIKGSQSRAKLGSSSVQRSPVEVQIPLAKILSEEDSKLDDSRLQGNIEAFLRGWDAYNSSSEVVDLSLSSEIELLSGS 431 (783)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~r~~~dV~v~m~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~G~ 431 (783)
+.|.|+.+. ..... +++ +.
T Consensus 281 ----------------------N~vtv~~~~--~~~~~------------------k~y-------------Dl------ 299 (621)
T KOG1301|consen 281 ----------------------NRVTLESES--KRKKK------------------KSY-------------DL------ 299 (621)
T ss_pred ----------------------ceEEeeccc--cCCCC------------------ccc-------------cC------
Confidence 455555543 10110 001 11
Q ss_pred ccccCCCCChhHHHHHHhhhhhhHHHHHHHHHHHHHHhcC-------CCc--ccccCCCCCCHHHHHHHHHHHhh--CHH
Q 003965 432 FVSTENFRGTPYMEALLDRRMKDGTVLIKKWLQEALRQEN-------LTV--NVRSRPGSATKSELQAMIKALAK--NQS 500 (783)
Q Consensus 432 l~~~~~~~~~~lweaLl~k~~kd~~~~V~k~L~Ea~~~E~-------l~~--~ik~~~G~vT~~eL~~lik~l~~--~~~ 500 (783)
.++| .||..--+.-.-+|+..|.+-|.+--+++- ++- +.....+.-|. .|++-++.+|. ..|
T Consensus 300 --d~~D----~fW~~n~~~pFP~VAE~Ve~eL~~Yk~~~~ei~r~~G~sg~~e~~~~~~~Dtt-~l~~aV~sLPEL~ekK 372 (621)
T KOG1301|consen 300 --DPND----KFWRRNKGSPFPEVAENVEEELESYKNEEAEIKRKMGLSGEDEGAIDELNDTT-KLQSAVSSLPELTEKK 372 (621)
T ss_pred --CCcc----HHHHhcCCCCCchHHHHHHHHHHHHHhhHHHHHhhcCCCcccccccccccchH-HHHHHHHHhHHHHHhh
Confidence 1344 699888888888888888777765544322 110 00001122233 78888888773 222
Q ss_pred HHHhhhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHhhhcccchHhHHHHHHHhhccCccCCCCccchhhhhhcccCCC
Q 003965 501 SLVRNRGIIQFATAALAALDESHSARWDAFISAEKMLHVSAEDTSQSLAAQIGDLINKSCLVGSHDQKTRKMELSSRLLS 580 (783)
Q Consensus 501 ~l~kh~g~LQLa~A~~qaL~~~~~s~wd~l~s~Eq~L~~s~~dgs~s~~~ql~~lI~~~~s~~~~~~~~~~~~~~~~~ls 580 (783)
.+. -.|..+|.|.....++ -+.|.|..+|+..+. ..-.++ +.+++.... . -+
T Consensus 373 ~~I--D~HtnIatalL~~Ike---R~lD~ff~~E~~~~~--~~l~~~----~l~~~~~~~---------------~--gt 424 (621)
T KOG1301|consen 373 RLI--DLHTNIATALLEQIKE---RKLDDFFEVEKKIMS--TTLDRS----LLDILEDGE---------------A--GT 424 (621)
T ss_pred hhH--HHHHHHHHHHHHHHHH---hhhhHHHHHhccccc--ccccHH----HHHHHhccc---------------C--CC
Confidence 222 2467778888888775 589999999998863 222333 333333211 1 36
Q ss_pred HHHHHHHHhhhhhccCcCCCCCCCCCCCChHHHHHHHHHHHHHHhcCCCcchhhhhhhhhchhchhhh-----h-Hhhhh
Q 003965 581 FKDALLLTVTGYILAGENFPTSGSGGPFSWQEEHFLKEAIVDAIFENPSEAKFKFLHEQQYNDMQLKL-----E-LQDRV 654 (783)
Q Consensus 581 ~ddiL~Lll~iyslaGe~~~~~~~~~~fs~~~E~~L~kaL~~ail~~~~~~~l~~l~~~~~~~~~L~~-----e-~~~r~ 654 (783)
.+|.|++.| ||-+.-+..| ..+=++++++++.+=+ .+.-++|+- ....-+++.- . ...+.
T Consensus 425 ~EDkLR~~I-i~~ls~et~~---------~s~le~~e~al~e~~~---d~~Al~yvk-r~k~~~~~~s~~~~~~~~~t~~ 490 (621)
T KOG1301|consen 425 PEDKLRLFI-IYYLSTETVP---------QSDLEAVENALTEAGC---DLNALKYVK-RLKEITKMSSATSAYSGTTTKI 490 (621)
T ss_pred hHHHHHHHH-HHHHhhcccc---------HHHHHHHHHHHHhcCC---chHHHHHHH-HHHHHhhcccccccccCCcccH
Confidence 677888755 4444444422 2224556666654411 122222221 0000000000 0 11111
Q ss_pred hhHHhhhhhhhhccccccCCCCCCCCCCCcccccCccccccHHHHHHHHhc-C--CCCCCCCCC------C-CC-CCCCc
Q 003965 655 DNLFKFLHKVSGLKRKNIPLRDSAFGSDSHFHGDSYASKGLLYKLLMKVLA-K--SDVPGLEYH------S-ST-AKPSL 723 (783)
Q Consensus 655 ~~lf~~l~~~s~~r~~~k~lr~~~~~~~n~y~q~~~rh~PlL~~~le~l~~-k--~d~p~~~~~------s-~~-~~~~p 723 (783)
-++|+.+-. .+....+-+.|. +- + .++.--+..++|.+.+ + .+.-++-|. + ++ ...+-
T Consensus 491 ~~~~~kl~~-qg~~~vm~GVKN--Ll-p-------~~q~lPvT~iveal~~~~sn~etddYl~~DPk~~k~~~~~~~~~r 559 (621)
T KOG1301|consen 491 VDLFEKLYS-QGSSFVMEGVKN--LL-P-------KKQNLPVTRIVEALMDPKSNPETDDYLYFDPKLSKGGSSSLPIKR 559 (621)
T ss_pred HHHHHHHhh-ccHHHHHhhHHh--cC-c-------ccccCcHHHHHHHhhCCCCCccccceEeeccccccCCCccccccc
Confidence 223332110 001111111111 10 0 1245557788888883 3 221112111 1 11 11223
Q ss_pred CCCCeEEEEEECCcCHHHHHHHHHHhhccCCCCcEEEEccccccChhHHHHHhh
Q 003965 724 ADQNVILIFVIGGINGLEVHEALEALSESGRPDLELILGGTTLLTPADMFDLLL 777 (783)
Q Consensus 724 ~d~~~iIVFVVGGvTyeE~R~v~e~~~~s~~~~~~VilGgT~ilnp~~fl~~l~ 777 (783)
+.-++.|||||||=+|-|-....++... .+..-+||-|+|.|+||.+|+++|-
T Consensus 560 ~~f~eaIVFvVGGGNYiEYqnL~d~~kr-q~~~krIiYGsTeIln~~eFl~qls 612 (621)
T KOG1301|consen 560 QPFQEAIVFVVGGGNYIEYQNLVDLAKR-QQTVKRIIYGSTEILNAREFLEQLS 612 (621)
T ss_pred cchhheEEEEEcCcCeeehhhHHHHHHh-hcccceeEecchhcCCHHHHHHHHH
Confidence 3446699999999999999999999553 4445689999999999999999873
No 7
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=83.09 E-value=0.83 Score=48.37 Aligned_cols=67 Identities=19% Similarity=0.330 Sum_probs=47.1
Q ss_pred ceEEEE-EccccchhHHHHHHHHHhcCCccEEEEEeecChhhhcccCCC---CCCCchhhhHHHHHHHHHHH
Q 003965 76 RKMVVM-TSRLLSDAHRYIVRCLSASYGIRHCAIFTSISEIAHSAYTDS---PLGPDAFHEYETLLLQDYEE 143 (783)
Q Consensus 76 ~k~V~i-~s~lL~~~~~~ilr~l~~~~~~~~c~V~tsvSe~aH~~~~~~---~l~~~a~~e~~~~~~~~~ee 143 (783)
.++||+ --.+.+|+ ||-|-|+.+...-+||||+|+|+++-.--.+.. |-++..-.|....|.|-|||
T Consensus 74 ~~iVI~DslNyIKGf-RYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~~~p~e~gy~~e~le~L~~RyEe 144 (281)
T KOG3062|consen 74 GDIVIVDSLNYIKGF-RYELYCEAKAARTTYCVVHTAVPQELCREWNSEREDPGEDGYDDELLEALVQRYEE 144 (281)
T ss_pred CcEEEEecccccccc-eeeeeeehhccceeEEEEEecCCHHHHHHhcccCCCCCCCCCCHHHHHHHHHHhhC
Confidence 468888 55789999 999999999999999999999998765444432 32322334444445555555
No 8
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=45.51 E-value=42 Score=30.85 Aligned_cols=47 Identities=17% Similarity=0.309 Sum_probs=34.7
Q ss_pred eEEEEEE-CCcCHHHHHHHHHHhhccCCCCcEEEEcccc-ccChhHHHHH
Q 003965 728 VILIFVI-GGINGLEVHEALEALSESGRPDLELILGGTT-LLTPADMFDL 775 (783)
Q Consensus 728 ~iIVFVV-GGvTyeE~R~v~e~~~~s~~~~~~VilGgT~-ilnp~~fl~~ 775 (783)
++|.|=+ =+-++.+++.+.+..++ ..|++.|++||.+ -..|..+++.
T Consensus 53 d~V~iS~~~~~~~~~~~~l~~~~k~-~~p~~~iv~GG~~~t~~~~~~l~~ 101 (121)
T PF02310_consen 53 DVVGISVSMTPNLPEAKRLARAIKE-RNPNIPIVVGGPHATADPEEILRE 101 (121)
T ss_dssp SEEEEEESSSTHHHHHHHHHHHHHT-TCTTSEEEEEESSSGHHHHHHHHH
T ss_pred cEEEEEccCcCcHHHHHHHHHHHHh-cCCCCEEEEECCchhcChHHHhcc
Confidence 3555544 57788888888887665 6789999999998 4566666653
No 9
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=28.83 E-value=59 Score=34.26 Aligned_cols=36 Identities=22% Similarity=0.435 Sum_probs=26.8
Q ss_pred EEEEEECCcCHHHHHHHHHHhhccCCCCcEEEEccccccChhH
Q 003965 729 ILIFVIGGINGLEVHEALEALSESGRPDLELILGGTTLLTPAD 771 (783)
Q Consensus 729 iIVFVVGGvTyeE~R~v~e~~~~s~~~~~~VilGgT~ilnp~~ 771 (783)
+.|-|.||||.+.++.+.+. |.++++.||.|.+..+
T Consensus 168 ~~I~vdGGI~~eni~~l~~a-------GAd~vVvGSaIf~~~d 203 (220)
T PRK08883 168 IRLEIDGGVKVDNIREIAEA-------GADMFVAGSAIFGQPD 203 (220)
T ss_pred eeEEEECCCCHHHHHHHHHc-------CCCEEEEeHHHhCCCC
Confidence 77889999998888877765 4566777777875433
No 10
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=28.63 E-value=60 Score=33.24 Aligned_cols=36 Identities=36% Similarity=0.576 Sum_probs=26.2
Q ss_pred EEEEEECCcCHHHHHHHHHHhhccCCCCcEEEEccccccChhH
Q 003965 729 ILIFVIGGINGLEVHEALEALSESGRPDLELILGGTTLLTPAD 771 (783)
Q Consensus 729 iIVFVVGGvTyeE~R~v~e~~~~s~~~~~~VilGgT~ilnp~~ 771 (783)
+.|.+.||||-+.++.+.+. |..+++-|+.|.+..+
T Consensus 171 ~~i~v~GGI~~~nv~~l~~~-------GaD~vvvgSai~~~~d 206 (220)
T PRK05581 171 ILIEVDGGINADNIKECAEA-------GADVFVAGSAVFGAPD 206 (220)
T ss_pred ceEEEECCCCHHHHHHHHHc-------CCCEEEEChhhhCCCC
Confidence 56788999999876665553 5577777788886544
No 11
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=28.57 E-value=95 Score=28.38 Aligned_cols=38 Identities=34% Similarity=0.619 Sum_probs=29.1
Q ss_pred CeEEEEEECC--cCHHHHHHHHHHhhccCCCCcEEEEccc
Q 003965 727 NVILIFVIGG--INGLEVHEALEALSESGRPDLELILGGT 764 (783)
Q Consensus 727 ~~iIVFVVGG--vTyeE~R~v~e~~~~s~~~~~~VilGgT 764 (783)
..++|.|.|| +|+.|+..+-+.+.+...+..+||.|-+
T Consensus 37 ~~vLvni~~~~d~~l~ev~~~~~~i~~~~~~~a~ii~G~~ 76 (95)
T PF12327_consen 37 KGVLVNITGGPDLSLSEVNEAMEIIREKADPDANIIWGAS 76 (95)
T ss_dssp SEEEEEEEE-TTS-HHHHHHHHHHHHHHSSTTSEEEEEEE
T ss_pred ceEEEEEEcCCCCCHHHHHHHHHHHHHHhhcCceEEEEEE
Confidence 4599999998 7899999998776654578889999843
No 12
>PLN02334 ribulose-phosphate 3-epimerase
Probab=26.54 E-value=59 Score=34.06 Aligned_cols=35 Identities=29% Similarity=0.431 Sum_probs=25.5
Q ss_pred EEEEECCcCHHHHHHHHHHhhccCCCCcEEEEccccccChhH
Q 003965 730 LIFVIGGINGLEVHEALEALSESGRPDLELILGGTTLLTPAD 771 (783)
Q Consensus 730 IVFVVGGvTyeE~R~v~e~~~~s~~~~~~VilGgT~ilnp~~ 771 (783)
-|.++||||.+.++.+.+. |..+++-|+.|.+..+
T Consensus 176 ~I~a~GGI~~e~i~~l~~a-------Gad~vvvgsai~~~~d 210 (229)
T PLN02334 176 DIEVDGGVGPSTIDKAAEA-------GANVIVAGSAVFGAPD 210 (229)
T ss_pred cEEEeCCCCHHHHHHHHHc-------CCCEEEEChHHhCCCC
Confidence 4789999999988877765 4455666667775544
No 13
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=26.15 E-value=61 Score=32.90 Aligned_cols=34 Identities=29% Similarity=0.316 Sum_probs=24.5
Q ss_pred EEEEEECCcCHHHHHHHHHHhhccCCCCcEEEEccccccCh
Q 003965 729 ILIFVIGGINGLEVHEALEALSESGRPDLELILGGTTLLTP 769 (783)
Q Consensus 729 iIVFVVGGvTyeE~R~v~e~~~~s~~~~~~VilGgT~ilnp 769 (783)
+-|++.||||.+.++.+.+. |...++.|+.|.+.
T Consensus 161 ~~v~a~GGI~~~~i~~~~~~-------Ga~gv~~gs~i~~~ 194 (212)
T PRK00043 161 IPIVAIGGITPENAPEVLEA-------GADGVAVVSAITGA 194 (212)
T ss_pred CCEEEECCcCHHHHHHHHHc-------CCCEEEEeHHhhcC
Confidence 45789999998877766554 45667777778654
No 14
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=24.60 E-value=74 Score=31.39 Aligned_cols=34 Identities=24% Similarity=0.263 Sum_probs=22.8
Q ss_pred EEEEEECCcCHHHHHHHHHHhhccCCCCcEEEEccccccCh
Q 003965 729 ILIFVIGGINGLEVHEALEALSESGRPDLELILGGTTLLTP 769 (783)
Q Consensus 729 iIVFVVGGvTyeE~R~v~e~~~~s~~~~~~VilGgT~ilnp 769 (783)
+-|++.||++.+.++.+.+. |...+..|+.|.+.
T Consensus 151 ~pv~a~GGi~~~~i~~~~~~-------Ga~~i~~g~~i~~~ 184 (196)
T cd00564 151 IPVVAIGGITPENAAEVLAA-------GADGVAVISAITGA 184 (196)
T ss_pred CCEEEECCCCHHHHHHHHHc-------CCCEEEEehHhhcC
Confidence 44789999998776666554 44556666667643
No 15
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=24.32 E-value=81 Score=31.90 Aligned_cols=37 Identities=32% Similarity=0.533 Sum_probs=24.8
Q ss_pred EEEEEECCcCHHHHHHHHHHhhccCCCCcEEEEccccccChhHH
Q 003965 729 ILIFVIGGINGLEVHEALEALSESGRPDLELILGGTTLLTPADM 772 (783)
Q Consensus 729 iIVFVVGGvTyeE~R~v~e~~~~s~~~~~~VilGgT~ilnp~~f 772 (783)
+-|.+.||||.+.++.+.+. |...++-|+.|.++.++
T Consensus 166 ~~i~v~GGI~~env~~l~~~-------gad~iivgsai~~~~d~ 202 (210)
T TIGR01163 166 ILIEVDGGVNDDNARELAEA-------GADILVAGSAIFGADDY 202 (210)
T ss_pred ceEEEECCcCHHHHHHHHHc-------CCCEEEEChHHhCCCCH
Confidence 44689999998776655543 44556666777775554
Done!