Query 003965
Match_columns 783
No_of_seqs 244 out of 375
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 09:47:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003965.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003965hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dn1_A NSEC1, syntaxin binding 100.0 9.4E-42 3.2E-46 395.6 34.7 517 23-778 28-584 (594)
2 3puk_A Syntaxin-binding protei 100.0 9.8E-41 3.3E-45 386.9 29.3 509 23-778 32-579 (592)
3 2xhe_A UNC18; exocytosis, exoc 100.0 4.1E-36 1.4E-40 351.8 43.7 533 6-778 4-614 (650)
4 3c98_A Syntaxin-binding protei 100.0 9.3E-37 3.2E-41 354.4 35.8 537 1-777 13-595 (606)
5 1epu_A S-SEC1; parallel beta-s 100.0 1.2E-36 4E-41 352.5 35.5 525 16-778 14-587 (591)
6 1mqs_A SLY1 protein, SLY1P; SM 100.0 3.5E-34 1.2E-38 336.6 26.7 548 23-777 58-659 (671)
7 2zbt_A Pyridoxal biosynthesis 22.6 40 0.0014 34.9 2.7 41 729-776 210-254 (297)
8 2nv1_A Pyridoxal biosynthesis 19.5 45 0.0015 34.8 2.3 41 729-777 210-255 (305)
9 1y0e_A Putative N-acetylmannos 19.3 70 0.0024 31.2 3.5 42 729-777 176-218 (223)
10 3cu2_A Ribulose-5-phosphate 3- 18.7 75 0.0026 32.4 3.6 41 729-776 188-232 (237)
No 1
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3puj_A 3c98_A
Probab=100.00 E-value=9.4e-42 Score=395.56 Aligned_cols=517 Identities=17% Similarity=0.227 Sum_probs=336.6
Q ss_pred ccEEEecCcchhhhhhcCCHHHHHhhccccccccccCCCccccccccCCCCCCceEEEEEccccchhHHHHHHHHHh--c
Q 003965 23 DAILYLDSGCTESFQLIGAFPVLLELGVRAVCCLENMSPLDSVVDWNSNIDPMRKMVVMTSRLLSDAHRYIVRCLSA--S 100 (783)
Q Consensus 23 gavvylD~g~~E~l~w~gg~~~Lle~Ga~~V~~L~~~s~~d~~~~~~~~~~~~~k~V~i~s~lL~~~~~~ilr~l~~--~ 100 (783)
.=|+-+|.-+.-.+--.....-|++.|+--|-.|+. -+. .-+.-++|+|++-.. ..-..|++++.. .
T Consensus 28 ~KvLilD~~t~~ils~~~~~s~Ll~~gVtlve~i~~---~R~-------~~~~~~aIYfv~Pt~-~ni~~i~~d~~~~~~ 96 (594)
T 1dn1_A 28 WKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINK---RRE-------PLPSLEAVYLITPSE-KSVHSLISDFKDPPT 96 (594)
T ss_dssp CEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEETTS---CCC-------CCTTSEEEEEECCCH-HHHHHHHHTTSSGGG
T ss_pred CEEEEECcccHHHHHHHhCHHHHhhCCeEEEEeccc---ccC-------CCCCCceEEEEeCCH-HHHHHHHHHHhcccc
Confidence 348999999999999999999999999987777742 111 112347888887542 333555566642 1
Q ss_pred CCc-cEEEEEeecChhhhcccCCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCCcccccccccccCCCccccCCCCC
Q 003965 101 YGI-RHCAIFTSISEIAHSAYTDSPLGPDAFHEYETLLLQDYEELVRKRQTKSGQSEDTGFQKRLTFEDDGWSHLTSSEE 179 (783)
Q Consensus 101 ~~~-~~c~V~tsvSe~aH~~~~~~~l~~~a~~e~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 179 (783)
+.. .|-++||+. + + + +.+|++ ++.. .
T Consensus 97 ~~Y~~y~i~Ft~~------------~-~---~-------~~le~L-a~~~---------------------~-------- 123 (594)
T 1dn1_A 97 AKYRAAHVFFTDS------------C-P---D-------ALFNEL-VKSR---------------------A-------- 123 (594)
T ss_dssp CCCSEEEEEESSC------------C-C---H-------HHHHHH-HHSG---------------------G--------
T ss_pred cccceEEEEeCCC------------C-C---H-------HHHHHH-Hhcc---------------------h--------
Confidence 233 335555553 0 1 1 123333 1110 0
Q ss_pred cccccccCCCCccccccccCCcceEEEEeeceeeccCCCCeecccCCchhhhhhcccccccCCCCCCCCCCCCCCCCCCC
Q 003965 180 DTSTFEASSSGKDFYKEDVGQELVVSVHHFPMILCPLSPRVFVLPSEGSVAEACLSVEHEDSLSPVLPPIGTGLFSDGDD 259 (783)
Q Consensus 180 ~~~~~~~~~s~~~~~~~~~~~~~~v~V~~~Pl~~~pl~~~lf~lp~~~s~~~~~l~~~~~~sl~p~lPp~~~g~~~d~d~ 259 (783)
.....+|.++++.|.|+++++|++....++..+|.... .+.
T Consensus 124 --------------------~~~i~~v~e~~ldfiple~dlFsL~~p~~f~~l~~~~~-----------------~~~-- 164 (594)
T 1dn1_A 124 --------------------AKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSPHK-----------------AQM-- 164 (594)
T ss_dssp --------------------GGTEEEEEECCCCSEEEETTEEECCCTTHHHHHHCGGG-----------------TTS--
T ss_pred --------------------HhhhcchheeeeeeEEccCCEEEecCcchHHHHhCCcc-----------------ccc--
Confidence 01235899999999999999999999887766654321 011
Q ss_pred CCCchHHHHHHHHHHHHhcCCcceeeecCch--hHHHHHHHh-hhhhhhh----cc--ccCCceeEEEEecccccccCCC
Q 003965 260 VPPGAILTAHLIYHLASKMDLKMEIFSLGDL--SKNVGKLLT-DMSSLYD----VG--RRKRTAGLLLVDRTFDLLTPCC 330 (783)
Q Consensus 260 lp~~~~lla~~L~~L~~~l~l~~~if~~G~~--Sr~Ia~~l~-~m~~~~~----a~--~~k~~asLIlVDRtlDl~tp~~ 330 (783)
....+..+|.+|.+++..||.+|.|++.|+. ++.+|+.+. .|..+.. .+ ..+....|||+||++|++||++
T Consensus 165 ~~~~l~~ia~~L~sl~~tlg~~P~IRy~~~~~~~~~lA~~v~~~l~~~~~~~~~~~~~~~~~~~~LiIlDR~~D~vTPLl 244 (594)
T 1dn1_A 165 KNPILERLAEQIATLCATLKEYPAVRYRGEYKDNALLAQLIQDKLDAYKADDPTMGEGPDKARSQLLILDRGFDPSSPVL 244 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCEECCCTTSHHHHHHHHHHHHHHHHHHTTCTTTTCSTTGGGCEEEEEEGGGCSSTTTS
T ss_pred chHHHHHHHHHHHHHHHHcCCCCEEEECCCchHHHHHHHHHHHHHHHhhccCccccCCCCCCCCeEEEEcCCcccccccc
Confidence 1235666899999999999999999999987 567887654 3433211 11 1123458999999999999997
Q ss_pred ---CCCchHHHHhhcCCCCCCccccccccCCccccccCCCCcCCCCceeeeeccccccccccccccccccchhhhhhccc
Q 003965 331 ---HGDSLVDRMFSSLPRRKRTAFYAHIKGSQSRAKLGSSSVQRSPVEVQIPLAKILSEEDSKLDDSRLQGNIEAFLRGW 407 (783)
Q Consensus 331 ---h~e~LlDri~~~Lpr~~~~~~~~~~~~~~~~~~~~~~~~~r~~~dV~v~m~~l~~~~~~~~~~~~~~~~~~~~~~g~ 407 (783)
||++++|++|++= . +-|.++.... ...+.+
T Consensus 245 hq~TYqalv~dll~I~------~-----------------------n~v~~~~~~~---~~~~~k--------------- 277 (594)
T 1dn1_A 245 HELTFQAMSYDLLPIE------N-----------------------DVYKYETSGI---GEARVK--------------- 277 (594)
T ss_dssp CCCBHHHHHHHHSCCB------T-----------------------TEEEEEECSS---SSCEEE---------------
T ss_pred ccccHHHHHHHHhccc------C-----------------------CEEEecCCCC---CCccce---------------
Confidence 8899999999981 1 2333332110 000000
Q ss_pred cccCCCcchhcccccccccccCCcccccCCCCChhHHHHHHhhhhhhHHHHHHHHHHHHHHhcCCCcccccCCCCCCHHH
Q 003965 408 DAYNSSSEVVDLSLSSEIELLSGSFVSTENFRGTPYMEALLDRRMKDGTVLIKKWLQEALRQENLTVNVRSRPGSATKSE 487 (783)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~~~lweaLl~k~~kd~~~~V~k~L~Ea~~~E~l~~~ik~~~G~vT~~e 487 (783)
.. . ..++| .+|..++|+++.|+...|++.++++.++.+.. + .+..|.++
T Consensus 278 ----------------~~-~-----L~~~D----~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~~---~--~~~~s~~d 326 (594)
T 1dn1_A 278 ----------------EV-L-----LDEDD----DLWIALRHKHIAEVSQEVTRSLKDFSSSKRMN---T--GEKTTMRD 326 (594)
T ss_dssp ----------------EE-E-----CSTTC----HHHHHHTTSBHHHHHHHHHHHHHHHHHHTTC------------CCS
T ss_pred ----------------EE-e-----cCCCC----HHHHHHhccCHHHHHHHHHHHHHHHHHHhhhc---c--cccCCHHH
Confidence 01 1 11234 79999999999999999999999998876532 0 23457788
Q ss_pred HHHHHHHHhhCHHHHHhhhhHHHHHHHHHHHhcccchhHHHHHHHHHHHH-hhhcccchH--hHHHHHHHhhccCccCCC
Q 003965 488 LQAMIKALAKNQSSLVRNRGIIQFATAALAALDESHSARWDAFISAEKML-HVSAEDTSQ--SLAAQIGDLINKSCLVGS 564 (783)
Q Consensus 488 L~~lik~l~~~~~~l~kh~g~LQLa~A~~qaL~~~~~s~wd~l~s~Eq~L-~~s~~dgs~--s~~~ql~~lI~~~~s~~~ 564 (783)
|.++|+.||+.++...+..-|+.+|.+|++..+. ..++++.+||.| .+.+.++.. ..+.+|.++|....
T Consensus 327 l~~~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~~----~l~~~~e~EQ~l~~g~d~~~~~~k~~~~~i~~lL~~~~---- 398 (594)
T 1dn1_A 327 LSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQG----TVDKLCRVEQDLAMGTDAEGEKIKDPMRAIVPILLDAN---- 398 (594)
T ss_dssp SCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHT----THHHHHHHHHHHHHSBCSSCCBCCCTHHHHHHHHHCTT----
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcCCCcccchhHHHHHHHHHHHhCCC----
Confidence 9999999999999999999999999999999873 588999999988 544444442 35667777775322
Q ss_pred CccchhhhhhcccCCCHHHHHHHHhhhhhccCcCCCCCCCCCCCChHHHHHHHHHHHHHHhcCCCcchhhhhhhhhchhc
Q 003965 565 HDQKTRKMELSSRLLSFKDALLLTVTGYILAGENFPTSGSGGPFSWQEEHFLKEAIVDAIFENPSEAKFKFLHEQQYNDM 644 (783)
Q Consensus 565 ~~~~~~~~~~~~~~ls~ddiL~Lll~iyslaGe~~~~~~~~~~fs~~~E~~L~kaL~~ail~~~~~~~l~~l~~~~~~~~ 644 (783)
.+..|.|+| +.+|++..+.. + ++.+.++++++-+..... ..+ ++..
T Consensus 399 --------------~~~~dkLRL-~~Ly~l~~~g~-------~-----~~~~~~L~~~~~~~~~~~---~~i----~nl~ 444 (594)
T 1dn1_A 399 --------------VSTYDKIRI-ILLYIFLKNGI-------T-----EENLNKLIQHAQIPPEDS---EII----TNMA 444 (594)
T ss_dssp --------------SCHHHHHHH-HHHHHHHTTCB-------C-----HHHHHHHHHHHTCCHHHH---HHH----HHGG
T ss_pred --------------CChHhHHHH-HHHHHHHcCCC-------C-----HHHHHHHHHHcCCCHHHH---HHH----HHHH
Confidence 455555554 33555542211 1 567888887762211010 001 1111
Q ss_pred hhhhhHhhhhhhHHhhhhhhhhccccccCCCCCCCCCCCcccccCccccccHHHHHHHHh-cCCCCCCCCCCCCC-----
Q 003965 645 QLKLELQDRVDNLFKFLHKVSGLKRKNIPLRDSAFGSDSHFHGDSYASKGLLYKLLMKVL-AKSDVPGLEYHSST----- 718 (783)
Q Consensus 645 ~L~~e~~~r~~~lf~~l~~~s~~r~~~k~lr~~~~~~~n~y~q~~~rh~PlL~~~le~l~-~k~d~p~~~~~s~~----- 718 (783)
++++. .+.+ +..++..++.|+. ..++|+|+ ++||+|+|+++||+++ ||++...+||..+.
T Consensus 445 ~lG~~--~~~~---------~~~~k~~~~~~k~-~~~e~~Y~--lsr~~P~l~~ile~~~~~~L~~~~fP~~~~~~~~~~ 510 (594)
T 1dn1_A 445 HLGVP--IVTD---------STLRRRSKPERKE-RISEQTYQ--LSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASF 510 (594)
T ss_dssp GGTCC--CBCC---------CGGGCCCCCCCCC-CCCSCCCT--TCCCCCHHHHHHHHHHTTCSCTTTSCCSSCC-----
T ss_pred HhCCc--cccc---------ccccccccccccc-CCCCccce--eeccchHHHHHHHHHHhCCCCcccCCccCCCCCccc
Confidence 22221 0000 0011112223332 34689996 4679999999999999 88876666664321
Q ss_pred ------C------CCC-cCC---CCeEEEEEECCcCHHHHHHHHHHhhccCCCCcEEEEccccccChhHHHHHhhc
Q 003965 719 ------A------KPS-LAD---QNVILIFVIGGINGLEVHEALEALSESGRPDLELILGGTTLLTPADMFDLLLG 778 (783)
Q Consensus 719 ------~------~~~-p~d---~~~iIVFVVGGvTyeE~R~v~e~~~~s~~~~~~VilGgT~ilnp~~fl~~l~~ 778 (783)
. +.+ |++ +|+||||||||+||||||+||+++++ .+|++||||||+||||++||++|-.
T Consensus 511 ~~~~~s~r~~~w~~~~~~~~~~~~~riivFivGG~Ty~E~r~~~els~~--~~~~~VilG~t~il~p~~Fl~~l~~ 584 (594)
T 1dn1_A 511 STTAVSARYGHWHKNKAPGEYRSGPRLIIFILGGVSLNEMRCAYEVTQA--NGKWEVLIGSTHILTPQKLLDTLKK 584 (594)
T ss_dssp ---------------------CCCCEEEEEEETCEEHHHHHHHHHHHHH--HSSCEEEEEESSEECHHHHHHHHTT
T ss_pred cccccccccccccccCCccccccCCcEEEEEeCCccHHHHHHHHHHHhh--cCCceEEEeeCCcCCHHHHHHHHHH
Confidence 1 112 443 68899999999999999999999653 5779999999999999999999864
No 2
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A
Probab=100.00 E-value=9.8e-41 Score=386.91 Aligned_cols=509 Identities=16% Similarity=0.199 Sum_probs=335.2
Q ss_pred ccEEEecCcchhhhhhcCCHHHHHhhccccccccccCCCccccccccCCCCCCceEEEEEccccchhHHHHHHHHHhc--
Q 003965 23 DAILYLDSGCTESFQLIGAFPVLLELGVRAVCCLENMSPLDSVVDWNSNIDPMRKMVVMTSRLLSDAHRYIVRCLSAS-- 100 (783)
Q Consensus 23 gavvylD~g~~E~l~w~gg~~~Lle~Ga~~V~~L~~~s~~d~~~~~~~~~~~~~k~V~i~s~lL~~~~~~ilr~l~~~-- 100 (783)
.=|+-+|.-+.-.+--.....-|++.|+--|-.|+. . +. +. +.-++|+|++-... .-..|++++...
T Consensus 32 ~KvLvlD~~t~~ils~~~~~sdLl~~gVtlve~i~~-~--R~------~~-~~~~aIYfv~Pt~e-ni~~i~~dl~~~~~ 100 (592)
T 3puk_A 32 WKIMLLDEFTTKLLSSCCKMTDLLEEGITVIENIYK-N--RE------PV-RQMKALYFISPTPK-SVDCFLRDFGSKSE 100 (592)
T ss_dssp CEEEEECHHHHHHHHHSSCTTGGGGGTEEEEEESSS-C--CC------CB-TTSCEEEEECSCHH-HHHHHHHHHTGGGC
T ss_pred CEEEEECCccHHHHHHHhcHHHHHhCCcEEEeeccC-c--cC------CC-CCCcEEEEEeCCHH-HHHHHHHHHhcccc
Confidence 458899999999999999999999999987777742 1 11 11 22478888865433 346666777542
Q ss_pred CCc-cEEEEEeecChhhhcccCCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCCcccccccccccCCCccccCCCCC
Q 003965 101 YGI-RHCAIFTSISEIAHSAYTDSPLGPDAFHEYETLLLQDYEELVRKRQTKSGQSEDTGFQKRLTFEDDGWSHLTSSEE 179 (783)
Q Consensus 101 ~~~-~~c~V~tsvSe~aH~~~~~~~l~~~a~~e~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 179 (783)
+.. .|-++||+. + +. .+ +|++ + .+ .
T Consensus 101 ~~Y~~~~i~F~~~------------~-~~-------~l---le~L-~-~~---------------------~-------- 126 (592)
T 3puk_A 101 KKYKAAYIYFTDF------------C-PD-------SL---FNKI-K-AS---------------------C-------- 126 (592)
T ss_dssp CCBSCEEEEESSC------------C-CH-------HH---HHHH-H-HS---------------------C--------
T ss_pred ccCCeEEEEECCC------------C-CH-------HH---HHHH-H-hh---------------------H--------
Confidence 123 234555543 0 10 12 2333 1 10 0
Q ss_pred cccccccCCCCccccccccCCcceEEEEeeceeeccCCCCeecccCCchhhhhhcccccccCCCCCCCCCCCCCCCCCCC
Q 003965 180 DTSTFEASSSGKDFYKEDVGQELVVSVHHFPMILCPLSPRVFVLPSEGSVAEACLSVEHEDSLSPVLPPIGTGLFSDGDD 259 (783)
Q Consensus 180 ~~~~~~~~~s~~~~~~~~~~~~~~v~V~~~Pl~~~pl~~~lf~lp~~~s~~~~~l~~~~~~sl~p~lPp~~~g~~~d~d~ 259 (783)
. ....+|.++++.|.|+++++|++....++..+|..... ..+.
T Consensus 127 ~--------------------~~I~~v~e~~ldfiple~~lFsL~~p~~~~~l~~~~~~---------------~~~~-- 169 (592)
T 3puk_A 127 S--------------------KSIRRCKEINISFIPQESQVYTLDVPDAFYYCYSPDPS---------------NASR-- 169 (592)
T ss_dssp C--------------------SSEEEEEECCCCEEEEETTEEEECCTTHHHHHSCCSSS---------------TTHH--
T ss_pred H--------------------hhcCEEEEEeeeeEeccCCEEEecCCchHHHHcCCccc---------------cccc--
Confidence 0 11248999999999999999999998777665432100 0000
Q ss_pred CCCchHHHHHHHHHHHHhcCCcceeeecCc---hhHHHHHHHh-hhhhhhhcc-----ccCCceeEEEEecccccccCCC
Q 003965 260 VPPGAILTAHLIYHLASKMDLKMEIFSLGD---LSKNVGKLLT-DMSSLYDVG-----RRKRTAGLLLVDRTFDLLTPCC 330 (783)
Q Consensus 260 lp~~~~lla~~L~~L~~~l~l~~~if~~G~---~Sr~Ia~~l~-~m~~~~~a~-----~~k~~asLIlVDRtlDl~tp~~ 330 (783)
....+..+|.+|.+++..||..|.|++.|+ +|+.||+.+. .|..+.... ..+....|||+||++|++||++
T Consensus 170 ~~~~l~~ia~~L~sl~~tlg~~P~IRy~~~~~~~a~~lA~~l~~~l~~~~~~~~~~~~~~~~~~~LiIlDR~~D~vtPLl 249 (592)
T 3puk_A 170 KEVVMEAMAEQIVTVCATLDENPGVRYKSKPLDNASKLAQLVEKKLEDYYKIDEKGLIKGKTQSQLLIIDRGFDPVSTVL 249 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCEEEECCSSSSHHHHHHHHHHHHHHHSSSSCSSCSCCSCCSEEEEEEEGGGCSSTTTS
T ss_pred chHHHHHHHHHHHHHHHhcCCCCeEEECCCchHHHHHHHHHHHHHHHHHHhccCCCcCCCCCCceEEEecCCcccccccc
Confidence 123566689999999999999999999997 5789998775 565522221 1234568999999999999987
Q ss_pred ---CCCchHHHHhhcCCCCCCccccccccCCccccccCCCCcCCCCceeeeeccccccccccccccccccchhhhhhccc
Q 003965 331 ---HGDSLVDRMFSSLPRRKRTAFYAHIKGSQSRAKLGSSSVQRSPVEVQIPLAKILSEEDSKLDDSRLQGNIEAFLRGW 407 (783)
Q Consensus 331 ---h~e~LlDri~~~Lpr~~~~~~~~~~~~~~~~~~~~~~~~~r~~~dV~v~m~~l~~~~~~~~~~~~~~~~~~~~~~g~ 407 (783)
||++++|++|++ .. +-|.++... +. +
T Consensus 250 h~~TYqalv~dll~i------~~-----------------------~~v~~~~~g----~~---k--------------- 278 (592)
T 3puk_A 250 HELTFQAMAYDLLPI------EN-----------------------DTYKYKTDG----KE---K--------------- 278 (592)
T ss_dssp CCCBHHHHHHHHSCC------GG-----------------------GEEECCSSS----SC---C---------------
T ss_pred ccccHHHHHHHHhcc------cC-----------------------CEEEecCCC----ce---e---------------
Confidence 889999999998 11 223332210 00 0
Q ss_pred cccCCCcchhcccccccccccCCcccccCCCCChhHHHHHHhhhhhhHHHHHHHHHHHHHHhcCCCcccccCCCCCCHHH
Q 003965 408 DAYNSSSEVVDLSLSSEIELLSGSFVSTENFRGTPYMEALLDRRMKDGTVLIKKWLQEALRQENLTVNVRSRPGSATKSE 487 (783)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~~~lweaLl~k~~kd~~~~V~k~L~Ea~~~E~l~~~ik~~~G~vT~~e 487 (783)
.. . ...+| .+|..++|+++.|+...|++.++++.++.+.. .+..|+++
T Consensus 279 ----------------~~-~-----L~~~D----~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~~------~~~~s~~d 326 (592)
T 3puk_A 279 ----------------EA-V-----LEEDD----DLWVRVRHRHIAVVLEEIPKLMKEISSTKKAT------EGKTSLSA 326 (592)
T ss_dssp ----------------EE-E-----CSTTS----SSTTTTTTSBHHHHHTTSCSCSTTTTTCC-------------CCTT
T ss_pred ----------------EE-e-----cCCCC----HHHHHHhccCHHHHHHHHHHHHHHHHHHhhcc------cCCCCHHH
Confidence 00 1 11233 69999999999999999988888876544322 34568899
Q ss_pred HHHHHHHHhhCHHHHHhhhhHHHHHHHHHHHhcccchhHHHHHHHHHHHH-hhhcccchH--hHHHHHHHhhccCccCCC
Q 003965 488 LQAMIKALAKNQSSLVRNRGIIQFATAALAALDESHSARWDAFISAEKML-HVSAEDTSQ--SLAAQIGDLINKSCLVGS 564 (783)
Q Consensus 488 L~~lik~l~~~~~~l~kh~g~LQLa~A~~qaL~~~~~s~wd~l~s~Eq~L-~~s~~dgs~--s~~~ql~~lI~~~~s~~~ 564 (783)
|.++|+.||+.++...+..-|+.+|.+|++..+. ..++++.+||.+ .+.+.+|.. ..+.+|.++|....
T Consensus 327 l~~~v~~lp~~~~~~~~l~~H~~ia~~l~~~~~~----~l~~~~e~EQ~l~~g~d~~~~~~k~~~~~i~~~L~~~~---- 398 (592)
T 3puk_A 327 LTQLMKKMPHFRKQISKQVVHLNLAEDCMNKFKL----NIEKLCKTEQDLALGTDAEGQRVKDSMLVLLPVLLNKN---- 398 (592)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH----THHHHHHHHHHHHSSSCTTCCSCSCCHHHHTTTTTSCS----
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHhCCC----
Confidence 9999999999999999999999999999999872 588999999988 444444432 34556666655322
Q ss_pred CccchhhhhhcccCCCHHHHHHHHhhhhhccCcCCCCCCCCCCCChHHHHHHHHHHHHHHhcCCCcchhhhhhhhhchhc
Q 003965 565 HDQKTRKMELSSRLLSFKDALLLTVTGYILAGENFPTSGSGGPFSWQEEHFLKEAIVDAIFENPSEAKFKFLHEQQYNDM 644 (783)
Q Consensus 565 ~~~~~~~~~~~~~~ls~ddiL~Lll~iyslaGe~~~~~~~~~~fs~~~E~~L~kaL~~ail~~~~~~~l~~l~~~~~~~~ 644 (783)
.+..|.|+| +.+|++..+.. + ++.+.++++++=++. .. ..+ .+..
T Consensus 399 --------------~~~~dkLRL-~lLy~L~~~g~-------~-----~~~~~~Ll~~~g~~~-~~---~~i----~nl~ 443 (592)
T 3puk_A 399 --------------HDNCDKIRA-VLLYIFGINGT-------T-----EENLDRLIHNVKIED-DS---DMI----RNWS 443 (592)
T ss_dssp --------------CCHHHHHHH-HHHHHHHSCBC-------C-----HHHHHHHHHHTCCCT-TT---HHH----HGGG
T ss_pred --------------CCHHHHHHH-HHHHHHHcCCC-------C-----HHHHHHHHHHcCCCh-HH---HHH----HHHH
Confidence 455666654 33555543221 1 567888888863332 11 001 1111
Q ss_pred hhhhhHhhhhhhHHhhhhhhhhccccccCCCCCCCCCCCcccccCccccccHHHHHHHHh-cCCCCCCCCCCCCC-----
Q 003965 645 QLKLELQDRVDNLFKFLHKVSGLKRKNIPLRDSAFGSDSHFHGDSYASKGLLYKLLMKVL-AKSDVPGLEYHSST----- 718 (783)
Q Consensus 645 ~L~~e~~~r~~~lf~~l~~~s~~r~~~k~lr~~~~~~~n~y~q~~~rh~PlL~~~le~l~-~k~d~p~~~~~s~~----- 718 (783)
.|++. .+ ... +..++.|+. ..++|+|+ .+||+|+|+++||+++ ||++...|||..+.
T Consensus 444 ~lg~~--~~-----------~~~-~~~~~~rk~-~~~e~~Y~--~Sr~~P~l~~ile~~~~g~L~~~~fP~~~~~~~~~~ 506 (592)
T 3puk_A 444 HLGVP--IV-----------PPS-QQAKPLRKD-RSAEETFQ--LSRWTPFIKDIMEDAIDNRLDSKEWPYCSRCPAVWN 506 (592)
T ss_dssp GGTCC--SS-----------SSB-SSCCCCCCC-CCCCCGGG--SCCCCCTTHHHHHHHHTCCCCTTTSCC---------
T ss_pred HhCCc--cc-----------cCc-cccCccccc-CCCCccee--eeccchHHHHHHHHHHhCCCCcccCCccCCCCCCcc
Confidence 22221 00 000 112234432 34689997 3779999999999999 88876666664321
Q ss_pred ------CC-----C-CcCC---CCeEEEEEECCcCHHHHHHHHHHhhccCCCCcEEEEccccccChhHHHHHhhc
Q 003965 719 ------AK-----P-SLAD---QNVILIFVIGGINGLEVHEALEALSESGRPDLELILGGTTLLTPADMFDLLLG 778 (783)
Q Consensus 719 ------~~-----~-~p~d---~~~iIVFVVGGvTyeE~R~v~e~~~~s~~~~~~VilGgT~ilnp~~fl~~l~~ 778 (783)
.| . .|++ +++|||||||||||||+|+||++++ ..++++||||||+||||++||++|-.
T Consensus 507 ~~~~~s~r~~~w~~~~~~~~~~~~riiVFivGGvTysE~r~~~els~--~~~~~~vilG~T~i~np~~fl~~l~~ 579 (592)
T 3puk_A 507 GSGAVSARQKPRTNYLELDRKNGSRLIIFVIGGITYSEMRCAYEVSQ--AHKSCEVIIGSTHILTPRKLLDDIKM 579 (592)
T ss_dssp -----------CCCCCCCCCSCCSEEEEEEETCEEHHHHHHHHHHHH--HCCSSEEEEEESSEECHHHHHHHHSS
T ss_pred CCccccccccccccCccccccCCCeEEEEEeCCcCHHHHHHHHHHHh--hcCCceEEEeeCCcCCHHHHHHHHHH
Confidence 11 1 1233 5789999999999999999999965 36789999999999999999999754
No 3
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=100.00 E-value=4.1e-36 Score=351.79 Aligned_cols=533 Identities=14% Similarity=0.162 Sum_probs=350.0
Q ss_pred HHHHHHhHHH-HHHHHh----hccEEEecCcchhhhhhcCCHHHHHhhccccccccccCCCccccccccCCCCCCceEEE
Q 003965 6 VTKSCIDSIK-QISEHI----KDAILYLDSGCTESFQLIGAFPVLLELGVRAVCCLENMSPLDSVVDWNSNIDPMRKMVV 80 (783)
Q Consensus 6 ~~~~~~~~~~-~v~~~v----~gavvylD~g~~E~l~w~gg~~~Lle~Ga~~V~~L~~~s~~d~~~~~~~~~~~~~k~V~ 80 (783)
+.+.+++-.. ++. .| ..=|+.+|.-+.--+--......|++.|+..|..|++ .+ +. - +..++|+
T Consensus 4 l~~~~r~~ll~~~l-~v~~~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~lv~~l~~-~r-~~-------~-~~~~aIy 72 (650)
T 2xhe_A 4 LKSAVKTVLTNSLR-SVADGGDWKVLVVDKPALRMISECARMSEILDLGVTVVEDVSK-QR-KV-------L-PQFHGVY 72 (650)
T ss_dssp HHHHHHHHHHHHHT-TCCCCSSCEEEEECHHHHHHHHTTCCHHHHHTTTEEEEEETTT-CC-SC-------B-TTSEEEE
T ss_pred HHHHHHHHHHHHHh-ccccCCCCEEEEEccccHHHHHhhcCHHHHHhCCCEEEEeccC-CC-CC-------C-CCCCEEE
Confidence 3444445555 666 66 3568999999999999999999999999988877755 11 11 1 2357888
Q ss_pred EEccccchhHHHHHHHHHhc-CCcc-EEEEEeecChhhhcccCCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCCcc
Q 003965 81 MTSRLLSDAHRYIVRCLSAS-YGIR-HCAIFTSISEIAHSAYTDSPLGPDAFHEYETLLLQDYEELVRKRQTKSGQSEDT 158 (783)
Q Consensus 81 i~s~lL~~~~~~ilr~l~~~-~~~~-~c~V~tsvSe~aH~~~~~~~l~~~a~~e~~~~~~~~~ee~~~~~~~~~~~~~~~ 158 (783)
|+.--. ..-..|++++... +... +-++|++. + + .+.+|++.+ ..
T Consensus 73 fv~Pt~-~ni~~i~~d~~~~~~~y~~~~i~F~~~------------~-~----------~~~le~la~-~~--------- 118 (650)
T 2xhe_A 73 FIEPTE-ENLDYVIRDFADRTPTYEAAHLFFLSP------------V-P----------DALMAKLAS-AK--------- 118 (650)
T ss_dssp EECSCH-HHHHHHHHHHHSSSCSBSCEEEEESSC------------C-C----------HHHHHHHHH-SG---------
T ss_pred EEcCCH-HHHHHHHHHHhhcCCCcceEEEEeCCC------------C-C----------HHHHHHHHh-cc---------
Confidence 887643 4446666777653 3333 44445543 0 1 122344311 00
Q ss_pred cccccccccCCCccccCCCCCcccccccCCCCccccccccCCcceEEEEeeceeeccCCCCeecccCCchhhhhhccccc
Q 003965 159 GFQKRLTFEDDGWSHLTSSEEDTSTFEASSSGKDFYKEDVGQELVVSVHHFPMILCPLSPRVFVLPSEGSVAEACLSVEH 238 (783)
Q Consensus 159 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~V~~~Pl~~~pl~~~lf~lp~~~s~~~~~l~~~~ 238 (783)
. .....+|.++++.|.|+++++|++....++..+|..+
T Consensus 119 ------------~----------------------------~~~i~~v~e~~ldfiple~dlfsL~~~~~~~~l~~~~-- 156 (650)
T 2xhe_A 119 ------------A----------------------------VKYVKTLKEINTLFIPKEHRVFTLNEPHGLVQYYGSR-- 156 (650)
T ss_dssp ------------G----------------------------GGGEEEEEECCCCSEEEETTEEECSCTTHHHHHHSTT--
T ss_pred ------------h----------------------------hhhcCEEEEEccceEeccCCEEEeCCchHHHHhcCCc--
Confidence 0 0123589999999999999999999988776654211
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHhcCCcceeeecCc---hhHHHHHHHh-hhhh-h--hhcc--c
Q 003965 239 EDSLSPVLPPIGTGLFSDGDDVPPGAILTAHLIYHLASKMDLKMEIFSLGD---LSKNVGKLLT-DMSS-L--YDVG--R 309 (783)
Q Consensus 239 ~~sl~p~lPp~~~g~~~d~d~lp~~~~lla~~L~~L~~~l~l~~~if~~G~---~Sr~Ia~~l~-~m~~-~--~~a~--~ 309 (783)
.+ +..+..+|.+|++++..||..|.|++.|+ .|+.||+.+. .|.. . ...+ .
T Consensus 157 ------------------~~--~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~a~~la~~l~~~l~~~~~~~~~~~~~ 216 (650)
T 2xhe_A 157 ------------------SS--SYNIDHLVRRLSTLCTTMNVAPIVRYSSTSTPGTERMAMQLQKEIDMSVSQGLINARE 216 (650)
T ss_dssp ------------------GG--GCCHHHHHHHHHHHHHHHTCCCEEEECTTCCHHHHHHHHHHHHHHHHHHTTTSCCCCC
T ss_pred ------------------cc--hHHHHHHHHHHHHHHHHcCCCCEEEecCCCchHHHHHHHHHHHHHHhhccCCcccCCC
Confidence 00 24678899999999999999999999997 5999999876 3443 1 1111 1
Q ss_pred cCCceeEEEEecccccccCCC---CCCchHHHHhhcCCCCCCccccccccCCccccccCCCCcCCCCceeeeeccccccc
Q 003965 310 RKRTAGLLLVDRTFDLLTPCC---HGDSLVDRMFSSLPRRKRTAFYAHIKGSQSRAKLGSSSVQRSPVEVQIPLAKILSE 386 (783)
Q Consensus 310 ~k~~asLIlVDRtlDl~tp~~---h~e~LlDri~~~Lpr~~~~~~~~~~~~~~~~~~~~~~~~~r~~~dV~v~m~~l~~~ 386 (783)
......|||+||.+|++||++ ||++++|++|++ .. +-|.++... ..
T Consensus 217 ~~~~~~LiIlDR~~D~vTPLlhq~TYqaLi~dll~I------~~-----------------------n~v~~~~~~--~~ 265 (650)
T 2xhe_A 217 GKLKSQFLILDRAVDLKSPLVHELTYQAAAYDLLNI------EN-----------------------DIYSYSTVD--AG 265 (650)
T ss_dssp CSSCCEEEEECGGGCSSTTTSCCCBHHHHHHHHSCC------BT-----------------------TEEEEEECC--SS
T ss_pred CCCCCEEEEEcCCcchhhhccccchHHHHHHHHhcC------cC-----------------------CEEEEEecC--CC
Confidence 223568999999999999987 889999999998 11 244444321 00
Q ss_pred cccccccccccchhhhhhccccccCCCcchhcccccccccccCCcccccCCCCChhHHHHHHhhhhhhHHHHHHHHHHHH
Q 003965 387 EDSKLDDSRLQGNIEAFLRGWDAYNSSSEVVDLSLSSEIELLSGSFVSTENFRGTPYMEALLDRRMKDGTVLIKKWLQEA 466 (783)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~~~lweaLl~k~~kd~~~~V~k~L~Ea 466 (783)
...+.+ +. ....+| .+|..++|+|+.|+...|++.++++
T Consensus 266 ~~~~~k-------------------------------~~------~L~~~D----~~~~~~r~~~f~~v~~~l~~~~~~~ 304 (650)
T 2xhe_A 266 GREQQR-------------------------------QV------VLGEDD----DIWLQMRHLHISEVFRKVKSSFDEF 304 (650)
T ss_dssp CCSEEE-------------------------------EE------ECCTTC----TTHHHHTTSBHHHHHHHHHHHHHHH
T ss_pred CCccce-------------------------------EE------eCCCCC----HHHHHHhccCHHHHHHHHHHHHHHH
Confidence 000000 01 111234 6999999999999999999999999
Q ss_pred HHhcCCCcccccC-CCCCCHHHHHHHHHHHhhCHHHHHhhhhHHHHHHHHHHHhcccchhHHHHHHHHHHHH-hhhcccc
Q 003965 467 LRQENLTVNVRSR-PGSATKSELQAMIKALAKNQSSLVRNRGIIQFATAALAALDESHSARWDAFISAEKML-HVSAEDT 544 (783)
Q Consensus 467 ~~~E~l~~~ik~~-~G~vT~~eL~~lik~l~~~~~~l~kh~g~LQLa~A~~qaL~~~~~s~wd~l~s~Eq~L-~~s~~dg 544 (783)
.++.+....-+.. .+..++++|.++|++||+.++...+..-|+.+|.+|++..+. ..++++.+||.+ .+.+.+|
T Consensus 305 ~~~~~~~~~~~~~~~~~~s~~~lk~~V~~LP~~~~~~~~l~~H~~ia~~l~~~i~~----~l~~~~~~EQ~l~~g~d~~g 380 (650)
T 2xhe_A 305 CVSARRLQGLRDSQQGEGGAGALKQMLKDLPQHREQMQKYSLHLDMSNAINMAFSS----TIDSCTKAEQNIVTEEEQDG 380 (650)
T ss_dssp HHHHHHTTTCCCCCCSTTTHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHSCH----HHHHHHHHHHHHHHSBCSSC
T ss_pred HHHhhhhccccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCcccc
Confidence 7754422100100 134589999999999999999999999999999999999872 888999999988 5444444
Q ss_pred h--HhHHHHHHHhhccCccCCCCccchhhhhhcccCCCHHHHHHHHhhhhhccCcCCCCCCCCCCCChHHHHHHHHHHHH
Q 003965 545 S--QSLAAQIGDLINKSCLVGSHDQKTRKMELSSRLLSFKDALLLTVTGYILAGENFPTSGSGGPFSWQEEHFLKEAIVD 622 (783)
Q Consensus 545 s--~s~~~ql~~lI~~~~s~~~~~~~~~~~~~~~~~ls~ddiL~Lll~iyslaGe~~~~~~~~~~fs~~~E~~L~kaL~~ 622 (783)
. ...+.+|.++|.... .+..|.|+| +.+|++..+..+ +..+++++++
T Consensus 381 ~~~~~~~~~i~~ll~~~~------------------~~~~dkLRL-l~Ly~l~~~g~~------------~~~l~~ll~~ 429 (650)
T 2xhe_A 381 NKVRDFIGEVASVVVDRR------------------VSTEDKLRC-LMLCVLAKNGTS------------SHELNNLLDN 429 (650)
T ss_dssp CBCCCHHHHHHHHHHCTT------------------SCHHHHHHH-HHHHHHHHTCBC------------HHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhCCC------------------CCHHHHHHH-HHHHHHHhCCCC------------HHHHHHHHHH
Confidence 4 346778888886432 466777775 446777654310 4667777666
Q ss_pred HHhcCCCcchhhhhhhhhchhchhhhhHhhhhhhHHhhhhhhhhccccccCCCCCCCCCCCcccccCccccccHHHHHHH
Q 003965 623 AIFENPSEAKFKFLHEQQYNDMQLKLELQDRVDNLFKFLHKVSGLKRKNIPLRDSAFGSDSHFHGDSYASKGLLYKLLMK 702 (783)
Q Consensus 623 ail~~~~~~~l~~l~~~~~~~~~L~~e~~~r~~~lf~~l~~~s~~r~~~k~lr~~~~~~~n~y~q~~~rh~PlL~~~le~ 702 (783)
+=+.... +..+ .+...+++.. .+. ++.++.+...|+. ...+++|++ |.|++++++|+
T Consensus 430 ~G~~~~~---~~~i----~nL~~lgl~~-~~~----------~~~~~~~~~~rk~-~~~~yv~s~----y~Pl~~rlve~ 486 (650)
T 2xhe_A 430 ANIATPS---RSAI----YNLEMLGATV-VAD----------RRGRKPKTMKRIE-RDMPYVLSR----WTPIVKDLMEY 486 (650)
T ss_dssp TTCCGGG---GHHH----HGGGGGTCCC-BGG----------GCCCCCCCCCCCC-CCCCSTTCC----CCCHHHHHHHH
T ss_pred cCCCHHH---HHHH----HHHHHhCCcc-ccc----------ccccccccccccc-cCCcceecc----chHHHHHHHHH
Confidence 4221111 1111 1111221210 000 0011111112221 112466654 99999999999
Q ss_pred Hh-cCCCCCCCCCCCCC------------------------C-CC-----C------------------------cCCCC
Q 003965 703 VL-AKSDVPGLEYHSST------------------------A-KP-----S------------------------LADQN 727 (783)
Q Consensus 703 l~-~k~d~p~~~~~s~~------------------------~-~~-----~------------------------p~d~~ 727 (783)
++ ++++...||+.... . ++ + ....+
T Consensus 487 l~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~w~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 566 (650)
T 2xhe_A 487 IATGQLDLESYPAVRDGPSVVQPKRASKSVEEDDDGPATSARKRGNWAKNKGNNRSLPSTPSGVAVSGNGAAGAAESAKP 566 (650)
T ss_dssp HTTTCSCTTTSCBSSCGGGSCCCC---------------------------------------------------CCCSC
T ss_pred HhcCCCCcccCceeCCCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCC
Confidence 99 67654444443210 0 00 0 13357
Q ss_pred eEEEEEECCcCHHHHHHHHHHhhccCCCCcEEEEccccccChhHHHHHhhc
Q 003965 728 VILIFVIGGINGLEVHEALEALSESGRPDLELILGGTTLLTPADMFDLLLG 778 (783)
Q Consensus 728 ~iIVFVVGGvTyeE~R~v~e~~~~s~~~~~~VilGgT~ilnp~~fl~~l~~ 778 (783)
+||||||||+||+|+|++|+++ + +.+++||||||+|+||++|++.|..
T Consensus 567 ~viVF~iGGvTysEi~al~~ls-~--~~~~~viigsT~Iln~~~fl~~l~~ 614 (650)
T 2xhe_A 567 KLFVFINGTVSYNEIRCAYEVS-Q--SSGYEVYIGAHNIATPAEFVELVSL 614 (650)
T ss_dssp EEEEEEEEEECHHHHHHHHHHH-T--TSSSEEEEEEEEECCHHHHHHHHHT
T ss_pred EEEEEEECCCCHHHHHHHHHHH-h--cCCCEEEEeeCCcCCHHHHHHHHHH
Confidence 8999999999999999999994 2 5789999999999999999998864
No 4
>3c98_A Syntaxin-binding protein 1; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} PDB: 3puj_A
Probab=100.00 E-value=9.3e-37 Score=354.44 Aligned_cols=537 Identities=17% Similarity=0.233 Sum_probs=335.3
Q ss_pred CchhhHHHHHHhH-HHHHHHHhhc----cEEEecCcchhhhhhcCCHHHHHhhccccccccccCCCccccccccCCCCCC
Q 003965 1 MALLDVTKSCIDS-IKQISEHIKD----AILYLDSGCTESFQLIGAFPVLLELGVRAVCCLENMSPLDSVVDWNSNIDPM 75 (783)
Q Consensus 1 m~~~d~~~~~~~~-~~~v~~~v~g----avvylD~g~~E~l~w~gg~~~Lle~Ga~~V~~L~~~s~~d~~~~~~~~~~~~ 75 (783)
|+...+.+-+.+- ..++...|++ =|+=+|..+.-.+--.....-|++.|+--|-.|+. . +- .-+.
T Consensus 13 ~~p~~l~~~~~~~~l~~~i~~v~~~~~wKvLi~D~~t~~iis~~~~~~~L~~~gVtl~~~i~~-~--R~-------~~~~ 82 (606)
T 3c98_A 13 MAPIGLKAVVGEKIMHDVIKKVKKKGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINK-R--RE-------PLPS 82 (606)
T ss_dssp ---CCHHHHHHHHHHHHTHHHHCBTTBCEEEEECHHHHHHHHTTCCHHHHTTTTEEEEEETTS-C--CC-------CBTT
T ss_pred cCcHHHHHHHHHHHHHHHHhccCCCCceEEEEEcCCChHHHHhhCCHHHHHHCCCeEEEeccC-C--CC-------CCCC
Confidence 4444444444433 3356667754 48999999999999999999999999988777743 1 11 1123
Q ss_pred ceEEEEEccccchhHHHHHHHHHhc--CCccE-EEEEeecChhhhcccCCCCCCCchhhhHHHHHHHHHHHHHHHhhccC
Q 003965 76 RKMVVMTSRLLSDAHRYIVRCLSAS--YGIRH-CAIFTSISEIAHSAYTDSPLGPDAFHEYETLLLQDYEELVRKRQTKS 152 (783)
Q Consensus 76 ~k~V~i~s~lL~~~~~~ilr~l~~~--~~~~~-c~V~tsvSe~aH~~~~~~~l~~~a~~e~~~~~~~~~ee~~~~~~~~~ 152 (783)
-++|+|++-. ...-..|.+++... +.... -++||+. + + + ..+|++ .+..
T Consensus 83 ~~aIyfv~Pt-~eni~~i~~dl~~~~~~~Y~~~~i~F~~~------------~-~---~-------~~le~l-a~~~--- 134 (606)
T 3c98_A 83 LEAVYLITPS-EKSVHSLISDFKDPPTAKYRAAHVFFTDS------------C-P---D-------ALFNEL-VKSR--- 134 (606)
T ss_dssp SCEEEEECCC-HHHHHHHHHTTTSGGGCCBSCEEEEESSC------------C-C---H-------HHHHHH-HTSG---
T ss_pred CCEEEEEcCC-HHHHHHHHHHhcchhhcccCeEEEEECCC------------C-C---H-------HHHHHH-HhcC---
Confidence 4677777643 22223333444211 12221 2444433 1 1 1 123343 1110
Q ss_pred CCCCcccccccccccCCCccccCCCCCcccccccCCCCccccccccCCcceEEEEeeceeeccCCCCeecccCCchhhhh
Q 003965 153 GQSEDTGFQKRLTFEDDGWSHLTSSEEDTSTFEASSSGKDFYKEDVGQELVVSVHHFPMILCPLSPRVFVLPSEGSVAEA 232 (783)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~V~~~Pl~~~pl~~~lf~lp~~~s~~~~ 232 (783)
. .....+|.++++.|.|+++++|++....++..+
T Consensus 135 ------------------~----------------------------~~~i~~v~e~~ldf~~le~~lfsL~~~~~~~~l 168 (606)
T 3c98_A 135 ------------------A----------------------------AKVIKTLTEINIAFLPYESQVYSLDSADSFQSF 168 (606)
T ss_dssp ------------------G----------------------------GGTEEEEEECCCCSEECSSSEEECCCTTHHHHH
T ss_pred ------------------c----------------------------ccccCeEEEEecchhhcCCcEEEecCCchHHHh
Confidence 0 123578999999999999999999998888766
Q ss_pred hcccccccCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHhcCCcceeeecCch--hHHHHHHHhhhhhhhh----
Q 003965 233 CLSVEHEDSLSPVLPPIGTGLFSDGDDVPPGAILTAHLIYHLASKMDLKMEIFSLGDL--SKNVGKLLTDMSSLYD---- 306 (783)
Q Consensus 233 ~l~~~~~~sl~p~lPp~~~g~~~d~d~lp~~~~lla~~L~~L~~~l~l~~~if~~G~~--Sr~Ia~~l~~m~~~~~---- 306 (783)
|.... .+.+ .+.+..+|..|.+++..||.+|.|++.|+. +..+|+.+.++-....
T Consensus 169 ~~~~~-----------------~~~~--~~~l~~ia~~L~sv~~~lg~~P~Ir~~~~~~~~~~la~~~~~~l~~~~~~~~ 229 (606)
T 3c98_A 169 YSPHK-----------------AQMK--NPILERLAEQIATLCATLKEYPAVRYRGEYKDNALLAQLIQDKLDAYKADDP 229 (606)
T ss_dssp HCGGG-----------------TTSC--HHHHHHHHHHHHHHHHHHTCCCEEEECTTSHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cCCcc-----------------cccc--hHHHHHHHHHHHHHHHHcCCCCeEEEecCchHHHHHHHHHHHHHHHHHhcCC
Confidence 54321 1111 235667899999999999999999999864 5566665543322111
Q ss_pred -cc--ccCCceeEEEEecccccccCCC---CCCchHHHHhhcCCCCCCccccccccCCccccccCCCCcCCCCceeeeec
Q 003965 307 -VG--RRKRTAGLLLVDRTFDLLTPCC---HGDSLVDRMFSSLPRRKRTAFYAHIKGSQSRAKLGSSSVQRSPVEVQIPL 380 (783)
Q Consensus 307 -a~--~~k~~asLIlVDRtlDl~tp~~---h~e~LlDri~~~Lpr~~~~~~~~~~~~~~~~~~~~~~~~~r~~~dV~v~m 380 (783)
.+ ..+....|||+||++|++||++ ||++++|++|++ .. +-|.++.
T Consensus 230 ~~~~~~~~~~~~LlIlDR~~D~vTPLlhq~TYqalv~dll~I------~~-----------------------n~v~~~~ 280 (606)
T 3c98_A 230 TMGEGPDKARSQLLILDRGFDPSSPVLHELTFQAMSYDLLPI------EN-----------------------DVYKYET 280 (606)
T ss_dssp TTTCSTTTTSCEEEEEEGGGCSSTTTSCCCBHHHHHHHHSCC------BT-----------------------TEEEEEE
T ss_pred cccCCCCCCCceEEEeeccccccchhcccccHHHHHHHHhCc------cC-----------------------CeEEEec
Confidence 11 2233457999999999999997 889999999988 11 2444443
Q ss_pred cccccccccccccccccchhhhhhccccccCCCcchhcccccccccccCCcccccCCCCChhHHHHHHhhhhhhHHHHHH
Q 003965 381 AKILSEEDSKLDDSRLQGNIEAFLRGWDAYNSSSEVVDLSLSSEIELLSGSFVSTENFRGTPYMEALLDRRMKDGTVLIK 460 (783)
Q Consensus 381 ~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~~~lweaLl~k~~kd~~~~V~ 460 (783)
...-..+. ... +...+| .+|..++++++.|+...|+
T Consensus 281 ~~~~~~~~-----------------------------------k~~-----~l~~~D----~~~~~~r~~~f~~v~~~l~ 316 (606)
T 3c98_A 281 SGIGEARV-----------------------------------KEV-----LLDEDD----DLWIALRHKHIAEVSQEVT 316 (606)
T ss_dssp ESSSSEEE-----------------------------------EEE-----ECSTTC----HHHHHHTTSBHHHHHHHHH
T ss_pred CCCCCccc-----------------------------------eEe-----ecCCCc----hhHHHHhccCHHHHHHHHH
Confidence 22100000 000 112334 7999999999999999999
Q ss_pred HHHHHHHHhcCCCcccccCCCCCCHHHHHHHHHHHhhCHHHHHhhhhHHHHHHHHHHHhcccchhHHHHHHHHHHHH-hh
Q 003965 461 KWLQEALRQENLTVNVRSRPGSATKSELQAMIKALAKNQSSLVRNRGIIQFATAALAALDESHSARWDAFISAEKML-HV 539 (783)
Q Consensus 461 k~L~Ea~~~E~l~~~ik~~~G~vT~~eL~~lik~l~~~~~~l~kh~g~LQLa~A~~qaL~~~~~s~wd~l~s~Eq~L-~~ 539 (783)
+.++++.++++.. .....|.++|.++|+.||+.++...+..-|+.+|.+|++..+ ...++++.+||.| .+
T Consensus 317 ~~~~~~~~~~~~~-----~~~~~s~~dlk~~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~----~~l~~~~e~EQ~l~~~ 387 (606)
T 3c98_A 317 RSLKDFSSSKRMN-----TGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQ----GTVDKLCRVEQDLAMG 387 (606)
T ss_dssp HHHHHHHHHTTC------------CCSCCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHT----THHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhh-----cccccCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhC
Confidence 9999998876543 122347788999999999999999999999999999999986 3689999999988 55
Q ss_pred hcccchH--hHHHHHHHhhccCccCCCCccchhhhhhcccCCCHHHHHHHHhhhhhccCcCCCCCCCCCCCChHHHHHHH
Q 003965 540 SAEDTSQ--SLAAQIGDLINKSCLVGSHDQKTRKMELSSRLLSFKDALLLTVTGYILAGENFPTSGSGGPFSWQEEHFLK 617 (783)
Q Consensus 540 s~~dgs~--s~~~ql~~lI~~~~s~~~~~~~~~~~~~~~~~ls~ddiL~Lll~iyslaGe~~~~~~~~~~fs~~~E~~L~ 617 (783)
...+++. ..+.++.++|.... .+..|.|+| +.+|++..+.. + ++.+.
T Consensus 388 ~d~~~~~~~~~~~~i~~ll~~~~------------------~~~~dkLRL-~lLy~l~~~g~-------~-----~~~l~ 436 (606)
T 3c98_A 388 TDAEGEKIKDPMRAIVPILLDAN------------------VSTYDKIRI-ILLYIFLKNGI-------T-----EENLN 436 (606)
T ss_dssp BCTTSCBCSCTHHHHHHHHTCTT------------------SCHHHHHHH-HHHHHHHTTSB-------C-----HHHHH
T ss_pred CCcchhhHHHHHHHHHHHHhCCC------------------CCHHHHHHH-HHHHHHHhcCC-------C-----HHHHH
Confidence 4445443 35666777776432 466666665 33566654431 0 45677
Q ss_pred HHHHHHHhcCCCcchhhhhhhhhchhchhhhhHhhhhhhHHhhhhhhhhccccccCCCCCCC-CCCCcccccCccccccH
Q 003965 618 EAIVDAIFENPSEAKFKFLHEQQYNDMQLKLELQDRVDNLFKFLHKVSGLKRKNIPLRDSAF-GSDSHFHGDSYASKGLL 696 (783)
Q Consensus 618 kaL~~ail~~~~~~~l~~l~~~~~~~~~L~~e~~~r~~~lf~~l~~~s~~r~~~k~lr~~~~-~~~n~y~q~~~rh~PlL 696 (783)
+++.++.+.... ...+ .+...++.. +.. . +..+...+..++... ...++|+ ||+|++
T Consensus 437 ~~~~~~~~~~~~---~~~i----~~l~~lg~~-------~~~---~-~~~~~~~~~~~~~~~~~~~~~~s----~~~Pll 494 (606)
T 3c98_A 437 KLIQHAQIPPED---SEII----TNMAHLGVP-------IVT---D-STLRRRSKPERKERISEQTYQLS----RWTPII 494 (606)
T ss_dssp HHHHHHTCCHHH---HHHH----HHGGGGTCC-------CBC---C-CTTTCCCCCCCCCCCCCCCCTTC----CCCCHH
T ss_pred HHHHHcCCCHHH---HHHH----HHHHHhCCc-------ccc---c-cccccccchhhccCCccccccee----cchHHH
Confidence 777665321111 0111 111111110 000 0 001111111222111 1124444 599999
Q ss_pred HHHHHHHh-cCCCCCCCCCCCCC-----------C------C----CCcCCCCeEEEEEECCcCHHHHHHHHHHhhccCC
Q 003965 697 YKLLMKVL-AKSDVPGLEYHSST-----------A------K----PSLADQNVILIFVIGGINGLEVHEALEALSESGR 754 (783)
Q Consensus 697 ~~~le~l~-~k~d~p~~~~~s~~-----------~------~----~~p~d~~~iIVFVVGGvTyeE~R~v~e~~~~s~~ 754 (783)
++++++++ ++++...+|+.... . + ..+.++++||||||||+||+|+|++|++++ .+
T Consensus 495 ~~lle~l~k~~L~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIVFvvGGvTy~E~~~l~~ls~--~~ 572 (606)
T 3c98_A 495 KDIMEDTIEDKLDTKHYPYISTRSSASFSTTAVSARYGHWHKNKAPGEYRSGPRLIIFILGGVSLNEMRCAYEVTQ--AN 572 (606)
T ss_dssp HHHHHHHHTTCSCTTTSCCSSCC--------------------------CCCSEEEEEEETCEEHHHHHHHHHHHH--HH
T ss_pred HHHHHHHHhCCCCcccCcccCCCCcccccccccccccCCccccCCCCCCCCCCEEEEEEECCcCHHHHHHHHHHHH--Hc
Confidence 99999999 77665555543221 0 0 012345789999999999999999999954 35
Q ss_pred CCcEEEEccccccChhHHHHHhh
Q 003965 755 PDLELILGGTTLLTPADMFDLLL 777 (783)
Q Consensus 755 ~~~~VilGgT~ilnp~~fl~~l~ 777 (783)
++++||||||+|+||++||++|-
T Consensus 573 ~~~~viiGsT~Iln~~~fl~~L~ 595 (606)
T 3c98_A 573 GKWEVLIGSTHILTPQKLLDTLK 595 (606)
T ss_dssp SSCEEEEEESSEECHHHHHHHHT
T ss_pred CCcEEEEEeCCeeCHHHHHHHHH
Confidence 67999999999999999999973
No 5
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A
Probab=100.00 E-value=1.2e-36 Score=352.53 Aligned_cols=525 Identities=15% Similarity=0.208 Sum_probs=336.1
Q ss_pred HHHHHh----hccEEEecCcchhhhhhcCCHHHHHhhccccccccccCCCccccccccCCCCCCceEEEEEccccchhHH
Q 003965 16 QISEHI----KDAILYLDSGCTESFQLIGAFPVLLELGVRAVCCLENMSPLDSVVDWNSNIDPMRKMVVMTSRLLSDAHR 91 (783)
Q Consensus 16 ~v~~~v----~gavvylD~g~~E~l~w~gg~~~Lle~Ga~~V~~L~~~s~~d~~~~~~~~~~~~~k~V~i~s~lL~~~~~ 91 (783)
++...| ..=|+-+|.-+.--+--......|++.|+..|-.|+. .+ +. - +..++|+|+.-. ...-.
T Consensus 14 ~i~~~~~~~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~lv~~l~~-~r-~~-------~-~~~~aIy~v~Pt-~~ni~ 82 (591)
T 1epu_A 14 DVVLAVKKNAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDINR-RR-EP-------L-PLLEAVYLITPT-EESVK 82 (591)
T ss_dssp HTHHHHCSSSCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEESSS-CC-CC-------E-EEEEEEEEECCC-HHHHH
T ss_pred HHHHhhccCCCcEEEEEccccHHHHHHhcCHHHHHHCCCEEEeeccc-CC-CC-------C-CCCCeEEEecCC-HHHHH
Confidence 555555 3568999999999999999999999999988777753 11 11 1 124788888764 33445
Q ss_pred HHHHHHHhc--CCccE-EEEEeecChhhhcccCCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCCcccccccccccC
Q 003965 92 YIVRCLSAS--YGIRH-CAIFTSISEIAHSAYTDSPLGPDAFHEYETLLLQDYEELVRKRQTKSGQSEDTGFQKRLTFED 168 (783)
Q Consensus 92 ~ilr~l~~~--~~~~~-c~V~tsvSe~aH~~~~~~~l~~~a~~e~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (783)
.|++++... +.... -++||+. + +. +.+|++ ++..
T Consensus 83 ~i~~d~~~~~~~~y~~~~i~F~~~------------~-~~----------~~le~l-a~~~------------------- 119 (591)
T 1epu_A 83 CLMADFQNPDNPQYRGAHIFFTEA------------C-PE----------ELFKEL-CKST------------------- 119 (591)
T ss_dssp HHHHHTSSTTSCSEEEEEEEESSC------------C-CH----------HHHHHH-HHST-------------------
T ss_pred HHHHHHhhcccccCCeEEEEECCC------------C-CH----------HHHHHH-HhCc-------------------
Confidence 666777542 44433 3444442 0 10 123333 1110
Q ss_pred CCccccCCCCCcccccccCCCCccccccccCCcceEEEEeeceeeccCCCCeecccCCchhhhhhcccccccCCCCCCCC
Q 003965 169 DGWSHLTSSEEDTSTFEASSSGKDFYKEDVGQELVVSVHHFPMILCPLSPRVFVLPSEGSVAEACLSVEHEDSLSPVLPP 248 (783)
Q Consensus 169 ~~~~~w~~~~~~~~~~~~~~s~~~~~~~~~~~~~~v~V~~~Pl~~~pl~~~lf~lp~~~s~~~~~l~~~~~~sl~p~lPp 248 (783)
. .....+|.++++.|.|+++++|++....++..+|....
T Consensus 120 --~----------------------------~~~i~~v~e~~ldf~ple~dlfsl~~~~~~~~~~~~~~----------- 158 (591)
T 1epu_A 120 --T----------------------------ARFIKTLKEINIAFLPYESQIFSLDSPDTFQVYYNPSR----------- 158 (591)
T ss_dssp --T----------------------------GGGEEEEEECCCCSEEEETTEEECCCTHHHHHHHCGGG-----------
T ss_pred --h----------------------------HhhhceeeEeccceEecCCCEEEeCCccHHHHhcCCcc-----------
Confidence 0 01237899999999999999999998777766544310
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHhcCCcceeeecCc--hhHHHHHHHhhhhhhhhcc-------ccCCceeEEEE
Q 003965 249 IGTGLFSDGDDVPPGAILTAHLIYHLASKMDLKMEIFSLGD--LSKNVGKLLTDMSSLYDVG-------RRKRTAGLLLV 319 (783)
Q Consensus 249 ~~~g~~~d~d~lp~~~~lla~~L~~L~~~l~l~~~if~~G~--~Sr~Ia~~l~~m~~~~~a~-------~~k~~asLIlV 319 (783)
. +.....+..+|.+|++++..||..|.|++.|+ .|+.||+.+.++-...... .......|||+
T Consensus 159 ------~--~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~a~~lA~~l~~~l~~~~~~~~~~~~~~~~~~~~LiIl 230 (591)
T 1epu_A 159 ------A--QGGIPNKERCAEQIATLCATLGEYPSVRYRSDFDENASFAQLVQQKLDAYRADDPTMGEGPQKDRSQLLIL 230 (591)
T ss_dssp ------S--TTCHHHHHHHHHHHHHHHHHHTCCCEEEECTTSTHHHHHHHHHHHHHHHHHHTCTTTTCHHHHTSCEEEEE
T ss_pred ------h--hhhhHHHHHHHHHHHHHHHHcCCCCeEEecCCCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEE
Confidence 0 01124577799999999999999999999988 6999999876532221111 12234589999
Q ss_pred ecccccccCCC---CCCchHHHHhhcCCCCCCccccccccCCccccccCCCCcCCCCceeeeeccccccccccccccccc
Q 003965 320 DRTFDLLTPCC---HGDSLVDRMFSSLPRRKRTAFYAHIKGSQSRAKLGSSSVQRSPVEVQIPLAKILSEEDSKLDDSRL 396 (783)
Q Consensus 320 DRtlDl~tp~~---h~e~LlDri~~~Lpr~~~~~~~~~~~~~~~~~~~~~~~~~r~~~dV~v~m~~l~~~~~~~~~~~~~ 396 (783)
||.+|++||++ ||++++|++|++ .. +-|.++... ....+.+
T Consensus 231 DR~~D~vTPLlhq~TYqali~dll~I------~~-----------------------n~v~~~~~~---~~~~~~k---- 274 (591)
T 1epu_A 231 DRGFDPISPLLHELTFQAMAYDLLPI------EN-----------------------DVYKYVNTG---GNEVPEK---- 274 (591)
T ss_dssp EGGGCSSGGGSCCCBHHHHHHHHSCC------BT-----------------------TEECC------------------
T ss_pred CCCccchhhhhhhhhHHHHHHHHhCc------CC-----------------------CEEEEEecC---CCCccce----
Confidence 99999999987 889999999997 11 233333211 0000000
Q ss_pred cchhhhhhccccccCCCcchhcccccccccccCCcccccCCCCChhHHHHHHhhhhhhHHHHHHHHHHHHHHhcCCCccc
Q 003965 397 QGNIEAFLRGWDAYNSSSEVVDLSLSSEIELLSGSFVSTENFRGTPYMEALLDRRMKDGTVLIKKWLQEALRQENLTVNV 476 (783)
Q Consensus 397 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~~~lweaLl~k~~kd~~~~V~k~L~Ea~~~E~l~~~i 476 (783)
.. ....+| .+|..++|+|+.|+...|++.++++.++.+... .
T Consensus 275 ---------------------------~~------~L~~~D----~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~-~ 316 (591)
T 1epu_A 275 ---------------------------EV------LLDEKD----DLWVEMRHQHIAVVSQNVTKKLKQFADEKRMGT-A 316 (591)
T ss_dssp ---------------------------CE------ECCGGG----SSHHHHTTSBHHHHHHHHHHHHHHHHHHTC-----
T ss_pred ---------------------------EE------eCCCCC----hHHHHHhccCHHHHHHHHHHHHHHHHHhccccc-c
Confidence 00 111233 699999999999999999999999988765331 0
Q ss_pred ccCCCCCCHHHHHHHHHHHhhCHHHHHhhhhHHHHHHHHHHHhcccchhHHHHHHHHHHHH-hhhcccchH--hHHHHHH
Q 003965 477 RSRPGSATKSELQAMIKALAKNQSSLVRNRGIIQFATAALAALDESHSARWDAFISAEKML-HVSAEDTSQ--SLAAQIG 553 (783)
Q Consensus 477 k~~~G~vT~~eL~~lik~l~~~~~~l~kh~g~LQLa~A~~qaL~~~~~s~wd~l~s~Eq~L-~~s~~dgs~--s~~~ql~ 553 (783)
.+..+.++|.++|++||+.++...+..-|+.+|.+|++..+. ..++++.+||.+ .+.+.+|.+ ..+.+|.
T Consensus 317 ---~~~~s~~~lk~~v~~lP~~~~~~~~l~~H~~ia~~l~~~i~~----~l~~~~~~EQ~l~~g~d~~g~~~k~~~~~i~ 389 (591)
T 1epu_A 317 ---ADKAGIKDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKQYQQ----HVDKLCKVEQDLAMGTDADGEKIRDHMRNIV 389 (591)
T ss_dssp -------CCCCCHHHHHTHHHHHHHHTTSHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHSBCTTSCBCCCCHHHHH
T ss_pred ---ccccCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCCccccccchHHHHHH
Confidence 134578899999999999999999999999999999999872 888999999988 444444333 4566777
Q ss_pred HhhccCccCCCCccchhhhhhcccCCCHHHHHHHHhhhhhccCcCCCCCCCCCCCChHHHHHHHHHHHHHHhcCCCcchh
Q 003965 554 DLINKSCLVGSHDQKTRKMELSSRLLSFKDALLLTVTGYILAGENFPTSGSGGPFSWQEEHFLKEAIVDAIFENPSEAKF 633 (783)
Q Consensus 554 ~lI~~~~s~~~~~~~~~~~~~~~~~ls~ddiL~Lll~iyslaGe~~~~~~~~~~fs~~~E~~L~kaL~~ail~~~~~~~l 633 (783)
++|.... .+..|.|+| +.+|++..+.. + ++.+.++|+++=+.. ..+
T Consensus 390 ~~l~~~~------------------~~~~dkLRL-l~Ly~l~~~g~-------~-----~~~l~~ll~~~g~~~---~~~ 435 (591)
T 1epu_A 390 PILLDQK------------------ISAYDKIRI-ILLYIIHKGGI-------S-----EENLAKLVQHAHIPA---EEK 435 (591)
T ss_dssp HHHTCTT------------------SCHHHHHHH-HHHHHHHHTCB-------C-----HHHHHHHHHHTTCCH---HHH
T ss_pred HHHhCCC------------------CCHHHHHHH-HHHHHHHcCCC-------C-----HHHHHHHHHhcCCCH---HHH
Confidence 7664322 466677775 44666664431 0 456777665542110 001
Q ss_pred hhhhhhhchhchhhhhHhhhhhhHHhhhhhhhhcccccc-----CCCCCCCCCCCcccccCccccccHHHHHHHHh-cCC
Q 003965 634 KFLHEQQYNDMQLKLELQDRVDNLFKFLHKVSGLKRKNI-----PLRDSAFGSDSHFHGDSYASKGLLYKLLMKVL-AKS 707 (783)
Q Consensus 634 ~~l~~~~~~~~~L~~e~~~r~~~lf~~l~~~s~~r~~~k-----~lr~~~~~~~n~y~q~~~rh~PlL~~~le~l~-~k~ 707 (783)
..+ .+...+++.. .+. +..++..+ ..+.......++|+ +|.|++++++|+++ +++
T Consensus 436 ~~i----~~l~~~g~~~-~~~----------~~~~~~~~~~~~~~~~~~~~~~~y~~s----~~~Pl~~~ive~l~~~~l 496 (591)
T 1epu_A 436 WII----NDMQNLGVPI-IQD----------GGRRKIPQPYHTHNRKERQADHTYQMS----RWTPYMKDIMEAAVEDKL 496 (591)
T ss_dssp HHH----HHGGGGTCCC-BSC----------TTSCCCCCTTSGGGSCCCCSCCSCGGG----CCCCHHHHHHHHHHTTCS
T ss_pred HHH----HHHHHcCCcc-ccC----------CccccccccccccccccCCCCcccccc----ccchhHHHHHHHHhcCCC
Confidence 111 1111111100 000 00000000 01111011235565 49999999999999 676
Q ss_pred CCCCCCCCCCCC-----------C------C----CcCCCCeEEEEEECCcCHHHHHHHHHHhhccCCCCcEEEEccccc
Q 003965 708 DVPGLEYHSSTA-----------K------P----SLADQNVILIFVIGGINGLEVHEALEALSESGRPDLELILGGTTL 766 (783)
Q Consensus 708 d~p~~~~~s~~~-----------~------~----~p~d~~~iIVFVVGGvTyeE~R~v~e~~~~s~~~~~~VilGgT~i 766 (783)
+...||+..+.. + . ...+.+++|||||||+||+|+|++|++++. .+.+++||||||+|
T Consensus 497 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~viVF~vGG~Ty~E~~~l~~l~~~-~~~~~~viigsT~i 575 (591)
T 1epu_A 497 DTRHYPFLNGGGPRPSCQQPVSVRYGHWHKDKGQASYKSGPRLIIFVVGGISYSEMRSAYEVTQT-AKNNWEVILGSTHI 575 (591)
T ss_dssp CTTTSCBTTSCC-------------------------CCCCEEEEEEETCBCHHHHHHHHHHHTS-SCSSCEEEEEESSB
T ss_pred CcccCcccCCCCCccccCCccccccCcccCCCCccccCCCCeEEEEEECCCCHHHHHHHHHHHhh-ccCCCeEEEecCCc
Confidence 555555543210 0 0 023467899999999999999999999542 25689999999999
Q ss_pred cChhHHHHHhhc
Q 003965 767 LTPADMFDLLLG 778 (783)
Q Consensus 767 lnp~~fl~~l~~ 778 (783)
+||++|+++|..
T Consensus 576 ~n~~~fl~~l~~ 587 (591)
T 1epu_A 576 LTPEGLLRDLRK 587 (591)
T ss_dssp CCHHHHHHHHHT
T ss_pred CCHHHHHHHHHH
Confidence 999999998753
No 6
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1
Probab=100.00 E-value=3.5e-34 Score=336.59 Aligned_cols=548 Identities=14% Similarity=0.131 Sum_probs=321.5
Q ss_pred ccEEEecCcchhhhhhcCCHHHHHhhccccccccccCCCccccccccCCCCCCceEEEEEccccchhHHHHHHHHHhcCC
Q 003965 23 DAILYLDSGCTESFQLIGAFPVLLELGVRAVCCLENMSPLDSVVDWNSNIDPMRKMVVMTSRLLSDAHRYIVRCLSASYG 102 (783)
Q Consensus 23 gavvylD~g~~E~l~w~gg~~~Lle~Ga~~V~~L~~~s~~d~~~~~~~~~~~~~k~V~i~s~lL~~~~~~ilr~l~~~~~ 102 (783)
.=|+.+|.-+.--+--.+....|++.|+..|..|++ .+. .-+.-++|+|+.--. ..-..|++++. .+.
T Consensus 58 ~KvLVlD~~~~~ils~~~~~s~L~~~gVtlv~~l~~-~r~---------~~~~~~aIYfv~Pt~-~ni~~i~~d~~-~~~ 125 (671)
T 1mqs_A 58 WKVLILDIKSTATISSVLRVNDLLKAGITVHSLIKQ-DRS---------PLPDVPAIYFVSPTK-ENIDIIVNDLK-SDK 125 (671)
T ss_dssp CEEEEECHHHHHHHTTTCCHHHHHHTTEEEEEETTS-CCC---------CEEEEEEEEEECSCH-HHHHHHHHHHH-HTC
T ss_pred CEEEEEccccHHHHHHhcCHHHHHhCCCeEEeeccC-CCC---------CCCCceEEEEeCCCH-HHHHHHHHHhh-hcc
Confidence 458899999999999899999999999988877755 111 112347888887643 34456667774 444
Q ss_pred cc-EEEEEeecChhhhcccCCCCCCCchhhhHHHHHHHHHHHHHHHhhccCCCCCcccccccccccCCCccccCCCCCcc
Q 003965 103 IR-HCAIFTSISEIAHSAYTDSPLGPDAFHEYETLLLQDYEELVRKRQTKSGQSEDTGFQKRLTFEDDGWSHLTSSEEDT 181 (783)
Q Consensus 103 ~~-~c~V~tsvSe~aH~~~~~~~l~~~a~~e~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 181 (783)
+. +-++|++. + + .+.+|++.+..... +.
T Consensus 126 Y~~~~i~F~~~------------~-~----------~~lle~la~~~~~~------------------~~---------- 154 (671)
T 1mqs_A 126 YSEFYINFTSS------------L-P----------RNLLEDLAQQVSIT------------------GK---------- 154 (671)
T ss_dssp EEEEEEEESSC------------C-C----------HHHHHHHHHHHHTS------------------TT----------
T ss_pred cceEEEEecCC------------C-C----------HHHHHHHHhhhhhc------------------ch----------
Confidence 43 33444432 1 1 11233332111000 00
Q ss_pred cccccCCCCccccccccCCcceEEEEeeceeeccCCCCeecccCCchhhhhhcccccccCCCCCCCCCCCCCCCCCCCCC
Q 003965 182 STFEASSSGKDFYKEDVGQELVVSVHHFPMILCPLSPRVFVLPSEGSVAEACLSVEHEDSLSPVLPPIGTGLFSDGDDVP 261 (783)
Q Consensus 182 ~~~~~~~s~~~~~~~~~~~~~~v~V~~~Pl~~~pl~~~lf~lp~~~s~~~~~l~~~~~~sl~p~lPp~~~g~~~d~d~lp 261 (783)
.....+|.++++.|.|+++++|++....++..+|.... .|.+ +.
T Consensus 155 ------------------~~~i~~v~e~~ldfiple~dlfsL~~p~s~~~l~~~~~-----------------~d~~-~~ 198 (671)
T 1mqs_A 155 ------------------SDKIKQVYDQYLDFIVTEPELFSLEISNAYLTLNDPKT-----------------TEEE-IT 198 (671)
T ss_dssp ------------------GGGEEEEEECCCCSEECSTTEEECCCCSHHHHHHCSSS-----------------CTTH-HH
T ss_pred ------------------hhhcCEEEEEccceeeccCCEEEecCchHHHHhcCCCc-----------------cchh-HH
Confidence 01124899999999999999999999887766543210 0110 01
Q ss_pred CchHHHHHHHHHHHHhcCCccee-eecCchhHHHHHHHhhhhhhhhccc------------cCCceeEEEEecccccccC
Q 003965 262 PGAILTAHLIYHLASKMDLKMEI-FSLGDLSKNVGKLLTDMSSLYDVGR------------RKRTAGLLLVDRTFDLLTP 328 (783)
Q Consensus 262 ~~~~lla~~L~~L~~~l~l~~~i-f~~G~~Sr~Ia~~l~~m~~~~~a~~------------~k~~asLIlVDRtlDl~tp 328 (783)
..+..+|.+|++++..||..|.| |+.|+.|+.||+.|.++-....... ......|||+||.+|++||
T Consensus 199 ~~l~~ia~~L~sl~~~lg~~P~IRy~~g~~a~~va~~L~~~l~~~~~~~~~~lf~~~~~~~~~~~~~LiIlDR~~DlvTP 278 (671)
T 1mqs_A 199 GLCANIADGLFNTVLTINSIPIIRAAKGGPAEIIAEKLGTKLRDFVINTNSSSTSTLQGNDSLERGVLIILDRNIDFASM 278 (671)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCEEEECSSSHHHHHHHHHHHHHHHHHHTTCC------------CCCEEEEEEGGGCSHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEeCCCChHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCEEEEecCCccchhh
Confidence 24667999999999999999999 7999999999998876554332211 1234589999999999999
Q ss_pred CC---CCCchHHHHhhcCCCCCCccccccccCCccccccCCCCcCCCCceeeeeccccccccccccccccccchhhhhhc
Q 003965 329 CC---HGDSLVDRMFSSLPRRKRTAFYAHIKGSQSRAKLGSSSVQRSPVEVQIPLAKILSEEDSKLDDSRLQGNIEAFLR 405 (783)
Q Consensus 329 ~~---h~e~LlDri~~~Lpr~~~~~~~~~~~~~~~~~~~~~~~~~r~~~dV~v~m~~l~~~~~~~~~~~~~~~~~~~~~~ 405 (783)
++ ||++++|++|++= . +.|.++...- ..+..
T Consensus 279 Llhq~TYqaLi~Dll~I~-----~------------------------n~v~~~~~~~-~~~~~---------------- 312 (671)
T 1mqs_A 279 FSHSWIYQCMVFDIFKLS-----R------------------------NTVTIPLESK-ENGTD---------------- 312 (671)
T ss_dssp HCCCCBHHHHHHHHTTCC-----S------------------------SCEEECC-------------------------
T ss_pred hcccchHHHHHHHHhhcc-----C------------------------CEEEEeccCC-Ccccc----------------
Confidence 86 8899999999981 1 2233332210 00000
Q ss_pred cccccCCCcchhcccccccccccCCcccccCCCCChhHHHHHHhhhhhhHHHHHHHHHHHHHHhcC-CCc--cccc----
Q 003965 406 GWDAYNSSSEVVDLSLSSEIELLSGSFVSTENFRGTPYMEALLDRRMKDGTVLIKKWLQEALRQEN-LTV--NVRS---- 478 (783)
Q Consensus 406 g~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~~~lweaLl~k~~kd~~~~V~k~L~Ea~~~E~-l~~--~ik~---- 478 (783)
+-...... .... ...++| .+|..++|+|+.|+...|++.++++.++.. +.- .+.+
T Consensus 313 ~~~~~~~~--------~k~~------~L~~~D----~~w~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (671)
T 1mqs_A 313 NTTAKPLA--------TKKY------DIEPND----FFWMENSHLPFPEAAENVEAALNTYKEEAAEITRKTGVTNISDL 374 (671)
T ss_dssp -------C--------CEEE------CCCSSC----TTHHHHSSSBHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred cccccccc--------ceEE------ecCCCC----HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhcccCccCcccc
Confidence 00000000 0001 112234 699999999999999999999999887542 110 0000
Q ss_pred -CCCCCCHHHHHHHHHHHhhCHHHHHhhhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHhhhcccchHhHHHHHHHhhc
Q 003965 479 -RPGSATKSELQAMIKALAKNQSSLVRNRGIIQFATAALAALDESHSARWDAFISAEKMLHVSAEDTSQSLAAQIGDLIN 557 (783)
Q Consensus 479 -~~G~vT~~eL~~lik~l~~~~~~l~kh~g~LQLa~A~~qaL~~~~~s~wd~l~s~Eq~L~~s~~dgs~s~~~ql~~lI~ 557 (783)
+....+..+|.++|++||+.++...+..-|+.+|.+|++..+. ...++++.+||.|+ +.. ...+|.++|.
T Consensus 375 ~~~~~~s~~~lk~~V~~LP~~~~~~~~l~~H~~ia~~l~~~i~~---~~l~~~~e~EQ~l~-----~~~-~~~~i~~ll~ 445 (671)
T 1mqs_A 375 DPNSNNDTVQIQEVVKKLPELTAKKNTIDTHMNIFAALLSQLES---KSLDTFFEVEQDPG-----STK-TRSRFLDILK 445 (671)
T ss_dssp ------------CCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHT---TTCHHHHHHTSCCS-----SHH-HHHHHHHHTT
T ss_pred cccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhH---hhHHHHHHHHHHHh-----cCc-hHHHHHHHHh
Confidence 0113578999999999999999999999999999999999874 36778999999885 111 2567888887
Q ss_pred cCccCCCCccchhhhhhcccCCCHHHHHHHHhhhhhccCc-CCCCCCCCCCCChHHHHHHHHHHHHHHhcCCCcchhhhh
Q 003965 558 KSCLVGSHDQKTRKMELSSRLLSFKDALLLTVTGYILAGE-NFPTSGSGGPFSWQEEHFLKEAIVDAIFENPSEAKFKFL 636 (783)
Q Consensus 558 ~~~s~~~~~~~~~~~~~~~~~ls~ddiL~Lll~iyslaGe-~~~~~~~~~~fs~~~E~~L~kaL~~ail~~~~~~~l~~l 636 (783)
... ..+..|.|+| +.+|++..+ .. ..++=+.|+++|+++=++ ...++++
T Consensus 446 ~~~-----------------~~~~~dkLRL-l~Ly~l~~~~g~---------~~~~~~~l~~~l~~~G~~---~~~~~~l 495 (671)
T 1mqs_A 446 DGK-----------------TNNLEDKLRS-FIVLYLTSTTGL---------PKDFVQNVENYFKENDYD---INALKYV 495 (671)
T ss_dssp SCC-----------------STTHHHHHHH-HHHHHHHCSSCC---------CHHHHHHHHHHHHTTTCC---CTHHHHH
T ss_pred CcC-----------------CCCHHHHHHH-HHHHHHHcCCCC---------CHHHHHHHHHHHHHcCCC---HHHHHHH
Confidence 521 1366777775 446777654 31 133334577776443122 1112222
Q ss_pred hh-hhchhch-hhh-h-H---h--hh--hhhHHhhhhhhhhcccccc-CCCCCCCCCCCcccccCccccccHHHHHHHHh
Q 003965 637 HE-QQYNDMQ-LKL-E-L---Q--DR--VDNLFKFLHKVSGLKRKNI-PLRDSAFGSDSHFHGDSYASKGLLYKLLMKVL 704 (783)
Q Consensus 637 ~~-~~~~~~~-L~~-e-~---~--~r--~~~lf~~l~~~s~~r~~~k-~lr~~~~~~~n~y~q~~~rh~PlL~~~le~l~ 704 (783)
.. ..+.-+. +.. + . . .+ ..++|..+ ....+.+..+ +.+.....+.|.|. ..|.|.|.+++|+++
T Consensus 496 ~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~dl~~~~-~~r~~~~~~~~g~~~~~~~v~n~~P---~~~~~~l~~ive~l~ 571 (671)
T 1mqs_A 496 YKLREFMQLSNMSLQNKSLEDGSDSAFKPSNLTLSG-IYGLTEGKLQGGVGSLISGIKKLLP---EKKTIPITNVVDAIM 571 (671)
T ss_dssp HHHHHHHHHHHHHSCCCCC-------------------CHHHHHTTTSSCSSSHHHHHHTCC---CCCCCHHHHHHHHHH
T ss_pred HHHHHHhccccccccccccccccccccccccccccc-HHHHHHHHhccchhhHHHhHHhhCC---CcccchHHHHHHHHH
Confidence 10 0000000 000 0 0 0 01 23344321 0011111111 11110011234441 238899999999999
Q ss_pred -c-----C-----CCCCCCCCCC--C-CCCCCcC-CCCeEEEEEECCcCHHHHHHHHHHhhccC-CCCcEEEEccccccC
Q 003965 705 -A-----K-----SDVPGLEYHS--S-TAKPSLA-DQNVILIFVIGGINGLEVHEALEALSESG-RPDLELILGGTTLLT 768 (783)
Q Consensus 705 -~-----k-----~d~p~~~~~s--~-~~~~~p~-d~~~iIVFVVGGvTyeE~R~v~e~~~~s~-~~~~~VilGgT~iln 768 (783)
+ | .+||.+.... + .+.++.. ..+++|||||||+||+|+|++|++++. . .++++||+|||+|+|
T Consensus 572 ~~~~~~~k~~l~~~~y~~~~p~~~~~~~~~~~~~~~~~~viVFvVGG~Ty~E~~~l~~l~~~-~~~~~~~viiGsT~I~n 650 (671)
T 1mqs_A 572 DPLNSSQKNLETTDSYLYIDPKITRGSHTRKPKRQSYNKSLVFVVGGGNYLEYQNLQEWAHS-QLHNPKKVMYGSTAITT 650 (671)
T ss_dssp CSTTSCHHHHHHHTTSEEECTTSSSCSSSCCCCCCCCSEEEEEEETCBCHHHHHHHHHHHTT-CCSSCCEEEEEESSBCC
T ss_pred hccccccccCCCccCceeeCCCCcCCCCCCCcccCCCCeEEEEEECCccHHHHHHHHHHHhh-ccCCCceEEEeeccccC
Confidence 4 3 3455442110 0 0111111 237799999999999999999999542 1 358999999999999
Q ss_pred hhHHHHHhh
Q 003965 769 PADMFDLLL 777 (783)
Q Consensus 769 p~~fl~~l~ 777 (783)
|++||++|-
T Consensus 651 ~~~Fl~~l~ 659 (671)
T 1mqs_A 651 PAEFLNEIS 659 (671)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999863
No 7
>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*
Probab=22.64 E-value=40 Score=34.91 Aligned_cols=41 Identities=15% Similarity=0.354 Sum_probs=27.5
Q ss_pred EEEEEECCc-CHHHHHHHHHHhhccCCCCcEEEEcccccc---ChhHHHHHh
Q 003965 729 ILIFVIGGI-NGLEVHEALEALSESGRPDLELILGGTTLL---TPADMFDLL 776 (783)
Q Consensus 729 iIVFVVGGv-TyeE~R~v~e~~~~s~~~~~~VilGgT~il---np~~fl~~l 776 (783)
+|+++.||| |.+.++.+.+. |...++-|+.|. +|...++.+
T Consensus 210 vi~~a~GGI~~~e~i~~~~~a-------GadgvvvGsai~~~~dp~~~~~~l 254 (297)
T 2zbt_A 210 VVNFAAGGIATPADAALMMHL-------GMDGVFVGSGIFKSGDPRKRARAI 254 (297)
T ss_dssp SCEEBCSSCCSHHHHHHHHHT-------TCSEEEECGGGGGSSCHHHHHHHH
T ss_pred cEEEeeCCCCCHHHHHHHHHc-------CCCEEEEchHHhCCCCHHHHHHHH
Confidence 566799999 99988887765 334444456665 565555544
No 8
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
Probab=19.47 E-value=45 Score=34.83 Aligned_cols=41 Identities=15% Similarity=0.460 Sum_probs=27.8
Q ss_pred EEEEEECCc-CHHHHHHHHHHhhccCCCCcE-EEEcccccc---ChhHHHHHhh
Q 003965 729 ILIFVIGGI-NGLEVHEALEALSESGRPDLE-LILGGTTLL---TPADMFDLLL 777 (783)
Q Consensus 729 iIVFVVGGv-TyeE~R~v~e~~~~s~~~~~~-VilGgT~il---np~~fl~~l~ 777 (783)
||+|..||| |.+.++.+.+. |.. |++| +.++ +|..+++.+.
T Consensus 210 vi~~a~GGI~~~~d~~~~~~~-------GadgV~vG-sai~~~~~p~~~~~~l~ 255 (305)
T 2nv1_A 210 VVNFAAGGVATPADAALMMQL-------GADGVFVG-SGIFKSDNPAKFAKAIV 255 (305)
T ss_dssp SCEEBCSCCCSHHHHHHHHHT-------TCSCEEEC-GGGGGSSCHHHHHHHHH
T ss_pred EEEEeccCCCCHHHHHHHHHc-------CCCEEEEc-HHHHcCCCHHHHHHHHH
Confidence 788999999 99988877654 233 5555 5555 6666665553
No 9
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=19.25 E-value=70 Score=31.25 Aligned_cols=42 Identities=7% Similarity=0.185 Sum_probs=30.6
Q ss_pred EEEEEECCc-CHHHHHHHHHHhhccCCCCcEEEEccccccChhHHHHHhh
Q 003965 729 ILIFVIGGI-NGLEVHEALEALSESGRPDLELILGGTTLLTPADMFDLLL 777 (783)
Q Consensus 729 iIVFVVGGv-TyeE~R~v~e~~~~s~~~~~~VilGgT~ilnp~~fl~~l~ 777 (783)
+-|+..||| |.+.++.+.+. |...++-|+.|.+|....+.+.
T Consensus 176 ipvia~GGI~~~~~~~~~~~~-------Gad~v~vG~al~~p~~~~~~~~ 218 (223)
T 1y0e_A 176 AKVIAEGNVITPDMYKRVMDL-------GVHCSVVGGAITRPKEITKRFV 218 (223)
T ss_dssp SEEEEESSCCSHHHHHHHHHT-------TCSEEEECHHHHCHHHHHHHHH
T ss_pred CCEEEecCCCCHHHHHHHHHc-------CCCEEEEChHHcCcHHHHHHHH
Confidence 446889999 99998888765 3344444577988888777664
No 10
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=18.74 E-value=75 Score=32.38 Aligned_cols=41 Identities=12% Similarity=0.182 Sum_probs=29.7
Q ss_pred EEEEEECCcCHHHHHHHHH--HhhccCCCCcEEEEccccccC--hhHHHHHh
Q 003965 729 ILIFVIGGINGLEVHEALE--ALSESGRPDLELILGGTTLLT--PADMFDLL 776 (783)
Q Consensus 729 iIVFVVGGvTyeE~R~v~e--~~~~s~~~~~~VilGgT~iln--p~~fl~~l 776 (783)
+.|.|.||||.+.+..+.+ . |..+++-|+.|.+ |..-++.|
T Consensus 188 ~~I~vdGGI~~~~~~~~~~~~a-------Gad~~VvGSaIf~~d~~~~~~~l 232 (237)
T 3cu2_A 188 KLINIDGSMTLELAKYFKQGTH-------QIDWLVSGSALFSGELKTNLKVW 232 (237)
T ss_dssp CEEEEESSCCHHHHHHHHHSSS-------CCCCEEECGGGGSSCHHHHHHHH
T ss_pred ceEEEECCcCHHHHHHHHHhCC-------CCcEEEEeeHHhCCCHHHHHHHH
Confidence 6789999999999888766 4 5567777788874 44444444
Done!