BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003966
(783 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KPL|A Chain A, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
pdb|1KPL|B Chain B, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
pdb|1KPL|C Chain C, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
pdb|1KPL|D Chain D, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
Length = 473
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 100/211 (47%), Gaps = 18/211 (8%)
Query: 91 LACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNXXXXXXXXX 150
+A +VG LTGL+ AV + ++ A+V + +L L F ++
Sbjct: 38 MAAVVGTLTGLVGVAFEKAVSWVQNMRIGALVQ-VADHAFLLWPLAFI-LSALLAMVGYF 95
Query: 151 XXXXXXPTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVH 210
P A G GIPEI+ L + + L VK IG +G + AG+ LG+EGP V
Sbjct: 96 LVRKFAPEAGGSGIPEIEGALEELRPVRWW--RVLPVKFIGGMGTLGAGMVLGREGPTVQ 153
Query: 211 IGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSL 270
IG + ++ D R++ + R L+ G+++G+ AAF AP+ G+LF +
Sbjct: 154 IGGNLGRMV----LDVFRMR--------SAEARHTLLATGAAAGLSAAFNAPLAGILFII 201
Query: 271 EEVATWWRSALLWRTFFSTAVVV--VVLRAF 299
EE+ +R L+ T V++ +V R F
Sbjct: 202 EEMRPQFRYNLISIKAVFTGVIMSSIVFRIF 232
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 443 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMG- 501
N+ F +L FI + L+ F P G+F P++ +G+ G GMA
Sbjct: 318 NLIPIAAAGNFSVGLLLFIFITRVVTTLLCFSSGAPGGIFAPMLALGTLLGTAFGMAAAV 377
Query: 502 --SYTNIDQGLYAVLGAASLMAGSMRMTVSLCVI 533
+++ G +A+ G +LMA S+R ++ V+
Sbjct: 378 LFPQYHLEAGTFAIAGMGALMAASVRAPLTGIVL 411
>pdb|3ORG|A Chain A, Crystal Structure Of A Eukaryotic Clc Transporter
pdb|3ORG|B Chain B, Crystal Structure Of A Eukaryotic Clc Transporter
pdb|3ORG|C Chain C, Crystal Structure Of A Eukaryotic Clc Transporter
pdb|3ORG|D Chain D, Crystal Structure Of A Eukaryotic Clc Transporter
Length = 632
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 89/185 (48%), Gaps = 12/185 (6%)
Query: 452 EFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY--TNIDQG 509
F + +++ I+ IL ++ G+ +P+G+F+P L+G+ +GRL G M I G
Sbjct: 315 HFGWTELILMPIIKFILVALSIGLPLPAGVFVPSFLIGAGFGRLYGELMRVVFGNAIVPG 374
Query: 510 LYAVLGAASLMAGSMRMTVSLCVIFXXXXXXXXXXXXXXXXXXXAKTVGDSFNPSIYEII 569
YAV+GAA+ AG R +S VI A VG++FN S+YE +
Sbjct: 375 SYAVVGAAAFTAGVTR-ALSCAVIIFEVTGQIRHLVPVLISVLLAVIVGNAFNRSLYETL 433
Query: 570 LELKGLPFL-----DAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNG 624
+ +K LP++ D PE M + I+ +P + S + + I++ N
Sbjct: 434 VLMKHLPYMPILRRDRSPE--MTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLV-- 489
Query: 625 FPVLD 629
FPV+D
Sbjct: 490 FPVID 494
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 159 AAGPGIPEIKAYLNGV--DTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 216
A G G+P++K+ L+G + L K +G I A+ GL +G EGP VHI IA
Sbjct: 77 AEGSGLPQMKSILSGFYDKMRSALELRVLFAKALGLICAIGGGLPVGWEGPNVHIACIIA 136
Query: 217 SLLGQGGPDNHRIKWQWLRYFNNDRDRR-DLITCGSSSGVCAAFRAPVGGVLFSLEEVAT 275
+ + + DR R + + G+ ++F AP+GGVL+S+E +A+
Sbjct: 137 ---------HQFYRLGVFKELCTDRALRLQTLAAACAVGLASSFGAPLGGVLYSIETIAS 187
Query: 276 WWRSALLWRTFFST 289
++ W+ S
Sbjct: 188 FYLVQAFWKGVLSA 201
>pdb|3ND0|A Chain A, X-Ray Crystal Structure Of A Slow Cyanobacterial Cl-H+
ANTIPORTER
pdb|3ND0|B Chain B, X-Ray Crystal Structure Of A Slow Cyanobacterial Cl-H+
ANTIPORTER
pdb|3Q17|A Chain A, Structure Of A Slow Clc Cl-H+ ANTIPORTER FROM A
CYANOBACTERIUM IN Bromide
pdb|3Q17|B Chain B, Structure Of A Slow Clc Cl-H+ ANTIPORTER FROM A
CYANOBACTERIUM IN Bromide
Length = 466
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 94/210 (44%), Gaps = 23/210 (10%)
Query: 92 ACLVGLLTGLIATLINLAVENIAGYK--LLAVVSFIEKDRYLQGFLYFTGVNXXXXXXXX 149
A +VGL+TG++ AV N+ ++ L +++ I +L L G+
Sbjct: 35 AIVVGLITGVLGAGFKSAVNNMLQWRSQLAQILAPIPPLAWLVTALISGGM----VALSF 90
Query: 150 XXXXXXXPTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLV 209
P +G GIP+I+ +L G P ++ L +K++G ++ AG+ G EGP +
Sbjct: 91 WLMKRFAPDTSGSGIPQIEGHLEG-KLPLVW-QRVLPIKLVGGFLSLGAGMLAGFEGPTI 148
Query: 210 HIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFS 269
+G I + G W + ++R LI G+ +G+ AF AP+ GV
Sbjct: 149 QMGGSIGQMTGG-----------WFK--ATQENQRILIAVGAGAGLATAFNAPLAGVALI 195
Query: 270 LEEVATWWRSALLW--RTFFSTAVVVVVLR 297
EE+ +RS L F + ++LR
Sbjct: 196 GEEMHPRFRSQTLAYHSLLFGCVMATIILR 225
>pdb|2HT2|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445h Mutant And Fab Complex
pdb|2HT2|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445h Mutant And Fab Complex
Length = 473
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 443 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA--- 499
N+ T F ++ F+ I L+ F P G+F P++ +G+ G GM
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 500 MGSYTNIDQGLYAVLGAASLMAGSMR 525
+ +++ G +A+ G +L+A S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 157 PTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 216
P A G GIPEI+ L D + L VK G +G + G+ LG+EGP V IG I
Sbjct: 102 PEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIG 159
Query: 217 SLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATW 276
++ D R+K D R L+ G+++G+ AAF AP+ G+LF +EE+
Sbjct: 160 RMV----LDIFRLK--------GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQ 207
Query: 277 WRSALL 282
+R L+
Sbjct: 208 FRYTLI 213
>pdb|2HT4|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445w Mutant And Fab Complex
pdb|2HT4|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445w Mutant And Fab Complex
Length = 473
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 443 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA--- 499
N+ T F ++ F+ I L+ F P G+F P++ +G+ G GM
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 500 MGSYTNIDQGLYAVLGAASLMAGSMR 525
+ +++ G +A+ G +L+A S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 157 PTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 216
P A G GIPEI+ L D + L VK G +G + G+ LG+EGP V IG I
Sbjct: 102 PEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIG 159
Query: 217 SLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATW 276
++ D R+K D R L+ G+++G+ AAF AP+ G+LF +EE+
Sbjct: 160 RMV----LDIFRLK--------GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQ 207
Query: 277 WRSALL 282
+R L+
Sbjct: 208 FRYTLI 213
>pdb|3NMO|A Chain A, Crystal Structure Of An Engineered Monomeric Clc-Ec1 Cl-H+
Transporter
Length = 465
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 443 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA--- 499
N+ T F ++ F+ I L+ F P G+F P++ +G+ G GM
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 500 MGSYTNIDQGLYAVLGAASLMAGSMR 525
+ +++ G +A+ G +L+A S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 64/126 (50%), Gaps = 14/126 (11%)
Query: 157 PTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 216
P A G GIPEI+ L D + L VK G +G + G+ LG+EGP V IG I
Sbjct: 102 PEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIG 159
Query: 217 SLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATW 276
++ D R+K D R L+ G+++G+ AAF AP+ G+LF EE+
Sbjct: 160 RMV----LDIFRLK--------GDEARHTLLATGAAAGLAAAFNAPLAGILFIWEEMRPQ 207
Query: 277 WRSALL 282
+R L+
Sbjct: 208 FRYTLI 213
>pdb|3EJY|A Chain A, Structure Of E203h Mutant Of E.Coli Cl-H+ ANTIPORTER, CLC-
Ec1
pdb|3EJY|B Chain B, Structure Of E203h Mutant Of E.Coli Cl-H+ ANTIPORTER, CLC-
Ec1
Length = 473
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 443 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA--- 499
N+ T F ++ F+ I L+ F P G+F P++ +G+ G GM
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 500 MGSYTNIDQGLYAVLGAASLMAGSMR 525
+ +++ G +A+ G +L+A S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 14/126 (11%)
Query: 157 PTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 216
P A G GIPEI+ L D + L VK G +G + G+ LG+EGP V IG I
Sbjct: 102 PEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIG 159
Query: 217 SLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATW 276
++ D R+K D R L+ G+++G+ AAF AP+ G+LF +E +
Sbjct: 160 RMV----LDIFRLK--------GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEHMRPQ 207
Query: 277 WRSALL 282
+R L+
Sbjct: 208 FRYTLI 213
>pdb|1KPK|A Chain A, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|B Chain B, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|C Chain C, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|D Chain D, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|E Chain E, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|F Chain F, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|2EXW|A Chain A, Crystal Structure Of A Ecclc-Fab Complex In The Absence Of
Bound Ions
pdb|2EXW|B Chain B, Crystal Structure Of A Ecclc-Fab Complex In The Absence Of
Bound Ions
Length = 473
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 443 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA--- 499
N+ T F ++ F+ I L+ F P G+F P++ +G+ G GM
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 500 MGSYTNIDQGLYAVLGAASLMAGSMR 525
+ +++ G +A+ G +L+A S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 157 PTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 216
P A G GIPEI+ L D + L VK G +G + G+ LG+EGP V IG I
Sbjct: 102 PEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIG 159
Query: 217 SLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATW 276
++ D R+K D R L+ G+++G+ AAF AP+ G+LF +EE+
Sbjct: 160 RMV----LDIFRLK--------GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQ 207
Query: 277 WRSALL 282
+R L+
Sbjct: 208 FRYTLI 213
>pdb|2EXY|A Chain A, Crystal Structure Of The E148q Mutant Of Ecclc, Fab
Complexed In Absence Of Bound Ions
pdb|2EXY|B Chain B, Crystal Structure Of The E148q Mutant Of Ecclc, Fab
Complexed In Absence Of Bound Ions
Length = 473
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 443 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA--- 499
N+ T F ++ F+ I L+ F P G+F P++ +G+ G GM
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 500 MGSYTNIDQGLYAVLGAASLMAGSMR 525
+ +++ G +A+ G +L+A S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 157 PTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 216
P A G GIPEI+ L D + L VK G +G + G+ LG++GP V IG I
Sbjct: 102 PEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGRQGPTVQIGGNIG 159
Query: 217 SLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATW 276
++ D R+K D R L+ G+++G+ AAF AP+ G+LF +EE+
Sbjct: 160 RMV----LDIFRLK--------GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQ 207
Query: 277 WRSALL 282
+R L+
Sbjct: 208 FRYTLI 213
>pdb|2EZ0|A Chain A, Crystal Structure Of The S107aE148QY445A MUTANT OF ECCLC,
In Complex With A Fab Fragment
pdb|2EZ0|B Chain B, Crystal Structure Of The S107aE148QY445A MUTANT OF ECCLC,
In Complex With A Fab Fragment
Length = 473
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 443 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA--- 499
N+ T F ++ F+ I L+ F P G+F P++ +G+ G GM
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 500 MGSYTNIDQGLYAVLGAASLMAGSMR 525
+ +++ G +A+ G +L+A S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 157 PTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 216
P A G GIPEI+ L D + L VK G +G + G+ LG++GP V IG I
Sbjct: 102 PEAGGAGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGRQGPTVQIGGNIG 159
Query: 217 SLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATW 276
++ D R+K D R L+ G+++G+ AAF AP+ G+LF +EE+
Sbjct: 160 RMV----LDIFRLK--------GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQ 207
Query: 277 WRSALL 282
+R L+
Sbjct: 208 FRYTLI 213
>pdb|2HTL|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445f Mutant And Fab Complex
pdb|2HTL|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445f Mutant And Fab Complex
Length = 473
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 443 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA--- 499
N+ T F ++ F+ I L+ F P G+F P++ +G+ G GM
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 500 MGSYTNIDQGLYAVLGAASLMAGSMR 525
+ +++ G +A+ G +L+A S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 157 PTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 216
P A G GIPEI+ L D + L VK G +G + G+ LG+EGP V IG I
Sbjct: 102 PEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIG 159
Query: 217 SLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATW 276
++ D R+K D R L+ G+++G+ AAF AP+ G+LF +EE+
Sbjct: 160 RMV----LDIFRLK--------GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQ 207
Query: 277 WRSALL 282
+R L+
Sbjct: 208 FRYTLI 213
>pdb|2HT3|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445l Mutant And Fab Complex
pdb|2HT3|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445l Mutant And Fab Complex
Length = 473
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 443 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA--- 499
N+ T F ++ F+ I L+ F P G+F P++ +G+ G GM
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 500 MGSYTNIDQGLYAVLGAASLMAGSMR 525
+ +++ G +A+ G +L+A S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 157 PTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 216
P A G GIPEI+ L D + L VK G +G + G+ LG+EGP V IG I
Sbjct: 102 PEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIG 159
Query: 217 SLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATW 276
++ D R+K D R L+ G+++G+ AAF AP+ G+LF +EE+
Sbjct: 160 RMV----LDIFRLK--------GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQ 207
Query: 277 WRSALL 282
+R L+
Sbjct: 208 FRYTLI 213
>pdb|2HTK|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445a Mutant And Fab Complex
pdb|2HTK|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445a Mutant And Fab Complex
Length = 473
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 443 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA--- 499
N+ T F ++ F+ I L+ F P G+F P++ +G+ G GM
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 500 MGSYTNIDQGLYAVLGAASLMAGSMR 525
+ +++ G +A+ G +L+A S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 157 PTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 216
P A G GIPEI+ L D + L VK G +G + G+ LG+EGP V IG I
Sbjct: 102 PEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIG 159
Query: 217 SLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATW 276
++ D R+K D R L+ G+++G+ AAF AP+ G+LF +EE+
Sbjct: 160 RMV----LDIFRLK--------GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQ 207
Query: 277 WRSALL 282
+R L+
Sbjct: 208 FRYTLI 213
>pdb|3DET|A Chain A, Structure Of The E418a, Y445a Doubly Ungated Mutant Of
E.Coli Clc_ec1, Cl-H+ ANTIPORTER
pdb|3DET|B Chain B, Structure Of The E418a, Y445a Doubly Ungated Mutant Of
E.Coli Clc_ec1, Cl-H+ ANTIPORTER
Length = 473
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 443 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA--- 499
N+ T F ++ F+ I L+ F P G+F P++ +G+ G GM
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 500 MGSYTNIDQGLYAVLGAASLMAGSMR 525
+ +++ G +A+ G +L+A S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 14/126 (11%)
Query: 157 PTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 216
P A G GIPEI+ L D + L VK G +G + G+ LG+ GP V IG I
Sbjct: 102 PEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGRAGPTVQIGGNIG 159
Query: 217 SLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATW 276
++ D R+K D R L+ G+++G+ AAF AP+ G+LF +EE+
Sbjct: 160 RMV----LDIFRLK--------GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQ 207
Query: 277 WRSALL 282
+R L+
Sbjct: 208 FRYTLI 213
>pdb|3EJZ|A Chain A, Structure Of E203v Mutant E.Coli Cl-H+ EXCHANGER, CLC-Ec1
pdb|3EJZ|B Chain B, Structure Of E203v Mutant E.Coli Cl-H+ EXCHANGER, CLC-Ec1
Length = 473
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 443 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA--- 499
N+ T F ++ F+ I L+ F P G+F P++ +G+ G GM
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 500 MGSYTNIDQGLYAVLGAASLMAGSMR 525
+ +++ G +A+ G +L+A S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 14/126 (11%)
Query: 157 PTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 216
P A G GIPEI+ L D + L VK G +G + G+ LG+EGP V IG I
Sbjct: 102 PEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIG 159
Query: 217 SLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATW 276
++ D R+K D R L+ G+++G+ AAF AP+ G+LF +E +
Sbjct: 160 RMV----LDIFRLK--------GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEVMRPQ 207
Query: 277 WRSALL 282
+R L+
Sbjct: 208 FRYTLI 213
>pdb|1OTS|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel And
Fab Complex
pdb|1OTS|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel And
Fab Complex
pdb|2FEE|A Chain A, Structure Of The Cl-H+ EXCHANGER CLC-Ec1 From E.Coli In
Nabr
pdb|2FEE|B Chain B, Structure Of The Cl-H+ EXCHANGER CLC-Ec1 From E.Coli In
Nabr
pdb|2H2P|A Chain A, Crystal Structure Of Clc-Ec1 In Complex With Fab Fragment
In Secn-
pdb|2H2P|B Chain B, Crystal Structure Of Clc-Ec1 In Complex With Fab Fragment
In Secn-
Length = 465
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 443 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA--- 499
N+ T F ++ F+ I L+ F P G+F P++ +G+ G GM
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 500 MGSYTNIDQGLYAVLGAASLMAGSMR 525
+ +++ G +A+ G +L+A S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 157 PTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 216
P A G GIPEI+ L D + L VK G +G + G+ LG+EGP V IG I
Sbjct: 102 PEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIG 159
Query: 217 SLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATW 276
++ D R+K D R L+ G+++G+ AAF AP+ G+LF +EE+
Sbjct: 160 RMV----LDIFRLK--------GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQ 207
Query: 277 WRSALL 282
+R L+
Sbjct: 208 FRYTLI 213
>pdb|2HLF|A Chain A, Structure Of The Escherichis Coli Clc Chloride Channel
Y445e Mutant And Fab Complex
pdb|2HLF|B Chain B, Structure Of The Escherichis Coli Clc Chloride Channel
Y445e Mutant And Fab Complex
Length = 444
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 443 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA--- 499
N+ T F ++ F+ I L+ F P G+F P++ +G+ G GM
Sbjct: 302 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 361
Query: 500 MGSYTNIDQGLYAVLGAASLMAGSMR 525
+ +++ G +A+ G +L+A S+R
Sbjct: 362 LFPQYHLEAGTFAIAGMGALLAASIR 387
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 157 PTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 216
P A G GIPEI+ L D + L VK G +G + G+ LG+EGP V IG I
Sbjct: 86 PEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIG 143
Query: 217 SLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATW 276
++ D R+K D R L+ G+++G+ AAF AP+ G+LF +EE+
Sbjct: 144 RMV----LDIFRLK--------GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQ 191
Query: 277 WRSALL 282
+R L+
Sbjct: 192 FRYTLI 197
>pdb|2FEC|A Chain A, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
pdb|2FEC|B Chain B, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
pdb|2FED|A Chain A, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
pdb|2FED|B Chain B, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
Length = 465
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 443 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA--- 499
N+ T F ++ F+ I L+ F P G+F P++ +G+ G GM
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 500 MGSYTNIDQGLYAVLGAASLMAGSMR 525
+ +++ G +A+ G +L+A S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 157 PTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 216
P A G GIPEI+ L D + L VK G +G + G+ LG+EGP V IG I
Sbjct: 102 PEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIG 159
Query: 217 SLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATW 276
++ D R+K D R L+ G+++G+ AAF AP+ G+LF +E++
Sbjct: 160 RMV----LDIFRLK--------GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEQMRPQ 207
Query: 277 WRSALL 282
+R L+
Sbjct: 208 FRYTLI 213
>pdb|1OTU|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
E148q Mutant And Fab Complex
pdb|1OTU|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
E148q Mutant And Fab Complex
Length = 465
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 443 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA--- 499
N+ T F ++ F+ I L+ F P G+F P++ +G+ G GM
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 500 MGSYTNIDQGLYAVLGAASLMAGSMR 525
+ +++ G +A+ G +L+A S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 157 PTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 216
P A G GIPEI+ L D + L VK G +G + G+ LG++GP V IG I
Sbjct: 102 PEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGRQGPTVQIGGNIG 159
Query: 217 SLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATW 276
++ D R+K D R L+ G+++G+ AAF AP+ G+LF +EE+
Sbjct: 160 RMV----LDIFRLK--------GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQ 207
Query: 277 WRSALL 282
+R L+
Sbjct: 208 FRYTLI 213
>pdb|4FTP|A Chain A, Structure Of The E202y Mutant Of The Cl-H+ ANTIPORTER
CLC-Ec1 From E.Coli
Length = 465
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 443 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA--- 499
N+ T F ++ F+ I L+ F P G+F P++ +G+ G GM
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 500 MGSYTNIDQGLYAVLGAASLMAGSMR 525
+ +++ G +A+ G +L+A S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 14/126 (11%)
Query: 157 PTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 216
P A G GIPEI+ L D + L VK G +G + G+ LG+EGP V IG I
Sbjct: 102 PEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIG 159
Query: 217 SLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATW 276
++ D R+K D R L+ G+++G+ AAF AP+ G+LF + E+
Sbjct: 160 RMV----LDIFRLK--------GDEARHTLLATGAAAGLAAAFNAPLAGILFIIYEMRPQ 207
Query: 277 WRSALL 282
+R L+
Sbjct: 208 FRYTLI 213
>pdb|4ENE|A Chain A, Structure Of The N- And C-Terminal Trimmed Clc-Ec1 Cl-H+
ANTIPORTER And Fab Complex
pdb|4ENE|B Chain B, Structure Of The N- And C-Terminal Trimmed Clc-Ec1 Cl-H+
ANTIPORTER And Fab Complex
Length = 446
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 443 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA--- 499
N+ T F ++ F+ I L+ F P G+F P++ +G+ G GM
Sbjct: 303 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 362
Query: 500 MGSYTNIDQGLYAVLGAASLMAGSMR 525
+ +++ G +A+ G +L+A S+R
Sbjct: 363 LFPQYHLEAGTFAIAGMGALLAASIR 388
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 157 PTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 216
P A G GIPEI+ L D + L VK G +G + G+ LG+EGP V IG I
Sbjct: 87 PEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIG 144
Query: 217 SLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATW 276
++ D R+K D R L+ G+++G+ AAF AP+ G+LF +EE+
Sbjct: 145 RMV----LDIFRLK--------GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQ 192
Query: 277 WRSALL 282
+R L+
Sbjct: 193 FRYTLI 198
>pdb|1OTT|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
E148a Mutant And Fab Complex
pdb|1OTT|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
E148a Mutant And Fab Complex
pdb|2H2S|A Chain A, Crystal Structure Of E148a Mutant Of Clc-Ec1 In Secn-
pdb|2H2S|B Chain B, Crystal Structure Of E148a Mutant Of Clc-Ec1 In Secn-
pdb|4FG6|A Chain A, Structure Of Ecclc E148a Mutant In Glutamate
pdb|4FG6|B Chain B, Structure Of Ecclc E148a Mutant In Glutamate
Length = 465
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 443 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA--- 499
N+ T F ++ F+ I L+ F P G+F P++ +G+ G GM
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 500 MGSYTNIDQGLYAVLGAASLMAGSMR 525
+ +++ G +A+ G +L+A S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 14/126 (11%)
Query: 157 PTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 216
P A G GIPEI+ L D + L VK G +G + G+ LG+ GP V IG I
Sbjct: 102 PEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGRAGPTVQIGGNIG 159
Query: 217 SLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATW 276
++ D R+K D R L+ G+++G+ AAF AP+ G+LF +EE+
Sbjct: 160 RMV----LDIFRLK--------GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQ 207
Query: 277 WRSALL 282
+R L+
Sbjct: 208 FRYTLI 213
>pdb|2R9H|A Chain A, Crystal Structure Of Q207c Mutant Of Clc-Ec1 In Complex
With Fab
pdb|2R9H|B Chain B, Crystal Structure Of Q207c Mutant Of Clc-Ec1 In Complex
With Fab
Length = 444
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 443 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA--- 499
N+ T F ++ F+ I L+ F P G+F P++ +G+ G GM
Sbjct: 302 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 361
Query: 500 MGSYTNIDQGLYAVLGAASLMAGSMR 525
+ +++ G +A+ G +L+A S+R
Sbjct: 362 LFPQYHLEAGTFAIAGMGALLAASIR 387
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 157 PTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 216
P A G GIPEI+ L D + L VK G +G + G+ LG+EGP V IG I
Sbjct: 86 PEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIG 143
Query: 217 SLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATW 276
++ D R+K D R L+ G+++G+ AAF AP+ G+LF +EE+
Sbjct: 144 RMV----LDIFRLK--------GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPC 191
Query: 277 WRSALL 282
+R L+
Sbjct: 192 FRYTLI 197
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 23 RDPESNSLQQPLLKRSRTLSSSPLA--LVGAKVSHIESLDYEINENDLFKHDW 73
+D E +L P L+ + VGA+V H ES +++IN N LF DW
Sbjct: 260 KDCEGGNLCYPTLQDIDDYLNQDYVKEAVGAEVDHYESCNFDINRNFLFAGDW 312
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 23 RDPESNSLQQPLLKRSRTLSSSPLA--LVGAKVSHIESLDYEINENDLFKHDW 73
+D E +L P L+ + VGA+V H ES +++IN N LF DW
Sbjct: 260 KDCEGGNLCYPTLQDIDDYLNQDYVKEAVGAEVDHYESCNFDINRNFLFAGDW 312
>pdb|2J9L|A Chain A, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|B Chain B, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|C Chain C, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|D Chain D, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|E Chain E, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|F Chain F, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2JA3|A Chain A, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|B Chain B, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|C Chain C, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|D Chain D, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|E Chain E, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|F Chain F, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
Length = 185
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 70/155 (45%), Gaps = 33/155 (21%)
Query: 610 VSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRR 669
V + ++ TT++GFPV+ ++ + L G +LR L++++ + R+
Sbjct: 36 VEDVETIISETTYSGFPVV---------VSRESQRLVGFVLRRDLIISI------ENARK 80
Query: 670 TEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT--TPYTVIESMSVAKA 727
++ V S + E + + ++ +DL P T T TP ++
Sbjct: 81 KQDGVVST--SIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIV-------- 130
Query: 728 MVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 762
+ +FR++GLR LV ++GI+T++D+
Sbjct: 131 VDIFRKLGLRQCLVTHN------GRLLGIITKKDV 159
>pdb|3NE8|A Chain A, The Crystal Structure Of A Domain From
N-Acetylmuramoyl-L-Alanine Amidase Of Bartonella
Henselae Str. Houston-1
Length = 234
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 11/111 (9%)
Query: 664 LQEKRRTEEWEVREKFSWVELAEREGKIEE------VAVTSEEMEMYIDLHPLTNTTPYT 717
LQ+ T R+ ++ L+ER K +E +++ ++ ID+H L T YT
Sbjct: 43 LQKGSHTIVALTRDSDIFLRLSERVKKAQEFDADLFISIHADT----IDVHSLRGATVYT 98
Query: 718 VIESMSVAKAMVLFRQVGLRHLL-VVPKYEAAGVSPVVGILTRQDLRAFNI 767
+ + S A A L LL +PK E+ ++ ++ LTR++ AF+I
Sbjct: 99 ISDEASDAIAKSLAESENKVDLLDGLPKEESLELTDILLDLTRRETHAFSI 149
>pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of
Hsp70 Interacting Protein
Length = 179
Score = 29.3 bits (64), Expect = 9.5, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 654 LVLALKKKW-FLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEME 702
L +A KK+W ++EKR ++E E+ S + LAE+E ++++ S++ +
Sbjct: 19 LRIAKKKRWNSIEEKRISQENELHAYLSKLILAEKERELDDRVKQSDDSQ 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,650,572
Number of Sequences: 62578
Number of extensions: 843456
Number of successful extensions: 1658
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1538
Number of HSP's gapped (non-prelim): 71
length of query: 783
length of database: 14,973,337
effective HSP length: 106
effective length of query: 677
effective length of database: 8,340,069
effective search space: 5646226713
effective search space used: 5646226713
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)