Query 003966
Match_columns 783
No_of_seqs 457 out of 2572
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 15:09:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003966.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003966hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0474 Cl- channel CLC-7 and 100.0 3E-174 6E-179 1404.3 48.7 734 23-781 22-761 (762)
2 KOG0475 Cl- channel CLC-3 and 100.0 3.7E-88 8.1E-93 736.5 32.1 577 92-766 58-694 (696)
3 KOG0476 Cl- channel CLC-2 and 100.0 1.2E-85 2.6E-90 724.8 32.9 638 71-768 78-859 (931)
4 cd03685 ClC_6_like ClC-6-like 100.0 1.3E-79 2.8E-84 695.8 48.7 459 57-581 1-462 (466)
5 PRK01862 putative voltage-gate 100.0 1.7E-75 3.6E-80 683.1 54.3 542 90-768 26-572 (574)
6 cd03684 ClC_3_like ClC-3-like 100.0 5.1E-70 1.1E-74 614.7 38.4 409 96-578 1-445 (445)
7 cd03683 ClC_1_like ClC-1-like 100.0 1.5E-67 3.2E-72 592.1 41.5 411 89-580 2-426 (426)
8 cd01036 ClC_euk Chloride chann 100.0 3.7E-67 8E-72 587.7 37.1 403 96-567 1-416 (416)
9 cd01031 EriC ClC chloride chan 100.0 2.1E-59 4.6E-64 524.7 39.2 398 95-571 1-402 (402)
10 PRK01610 putative voltage-gate 100.0 7.3E-59 1.6E-63 519.6 39.8 408 87-573 3-417 (418)
11 PRK05277 chloride channel prot 100.0 2E-58 4.3E-63 521.7 43.3 409 90-573 2-417 (438)
12 PF00654 Voltage_CLC: Voltage 100.0 4.4E-57 9.6E-62 497.6 32.5 346 144-560 2-355 (355)
13 cd01034 EriC_like ClC chloride 100.0 2.1E-56 4.6E-61 498.0 37.1 385 100-567 1-390 (390)
14 cd01033 ClC_like Putative ClC 100.0 2.1E-56 4.5E-61 496.6 36.5 385 96-562 1-387 (388)
15 COG0038 EriC Chloride channel 100.0 1.1E-54 2.4E-59 488.4 41.0 409 89-579 23-437 (443)
16 cd00400 Voltage_gated_ClC CLC 100.0 2E-52 4.3E-57 466.3 35.9 380 96-555 1-383 (383)
17 cd03682 ClC_sycA_like ClC sycA 100.0 3.2E-49 6.9E-54 438.2 37.2 375 92-567 2-378 (378)
18 PRK03655 putative ion channel 100.0 2E-46 4.3E-51 417.2 37.0 382 87-558 11-397 (414)
19 cd01034 EriC_like ClC chloride 99.7 2.3E-15 5.1E-20 168.3 17.7 182 88-298 201-382 (390)
20 cd01033 ClC_like Putative ClC 99.6 2.8E-15 6.1E-20 167.3 13.3 183 88-299 204-386 (388)
21 COG3448 CBS-domain-containing 99.6 3.1E-14 6.6E-19 144.7 17.3 135 586-771 242-376 (382)
22 COG2524 Predicted transcriptio 99.6 1.3E-14 2.8E-19 145.3 11.4 123 586-767 169-291 (294)
23 PRK05277 chloride channel prot 99.6 2.9E-14 6.3E-19 161.9 15.4 188 88-298 216-403 (438)
24 PRK11543 gutQ D-arabinose 5-ph 99.5 6E-14 1.3E-18 153.3 13.5 147 562-765 164-318 (321)
25 PRK10892 D-arabinose 5-phospha 99.5 1.6E-13 3.5E-18 150.2 13.9 150 562-766 169-324 (326)
26 cd00400 Voltage_gated_ClC CLC 99.5 1.4E-13 3E-18 154.0 13.1 163 87-275 204-368 (383)
27 COG4109 Predicted transcriptio 99.5 6.3E-14 1.4E-18 145.7 7.1 150 544-767 157-306 (432)
28 PRK01862 putative voltage-gate 99.5 4E-13 8.7E-18 157.9 13.6 181 89-298 239-421 (574)
29 PRK01610 putative voltage-gate 99.4 1.1E-12 2.5E-17 147.5 14.0 182 88-298 220-403 (418)
30 cd04641 CBS_pair_28 The CBS do 99.4 3.4E-12 7.3E-17 118.1 13.0 118 600-764 2-119 (120)
31 TIGR03520 GldE gliding motilit 99.4 1.8E-12 3.9E-17 145.5 13.3 130 586-773 188-317 (408)
32 cd03682 ClC_sycA_like ClC sycA 99.4 6.1E-12 1.3E-16 140.2 15.8 152 89-274 200-353 (378)
33 cd04619 CBS_pair_6 The CBS dom 99.4 7.7E-12 1.7E-16 114.7 12.4 112 600-764 2-113 (114)
34 PRK15094 magnesium/cobalt effl 99.4 4.6E-12 9.9E-17 135.8 12.4 132 586-773 64-195 (292)
35 cd01031 EriC ClC chloride chan 99.3 1.5E-11 3.2E-16 138.5 17.0 100 461-561 85-187 (402)
36 COG3620 Predicted transcriptio 99.3 6.1E-12 1.3E-16 117.3 11.2 121 587-766 63-183 (187)
37 cd04603 CBS_pair_KefB_assoc Th 99.3 8.5E-12 1.8E-16 113.9 12.0 109 600-764 2-110 (111)
38 cd04618 CBS_pair_5 The CBS dom 99.3 1.1E-11 2.3E-16 111.0 11.4 95 600-764 2-97 (98)
39 PRK07807 inosine 5-monophospha 99.3 5.3E-12 1.2E-16 143.2 11.3 144 563-768 58-206 (479)
40 cd04600 CBS_pair_HPP_assoc Thi 99.3 1.6E-11 3.5E-16 113.9 11.8 121 600-764 3-123 (124)
41 cd04593 CBS_pair_EriC_assoc_ba 99.3 2.3E-11 4.9E-16 111.5 12.1 113 600-764 2-114 (115)
42 cd04605 CBS_pair_MET2_assoc Th 99.3 4.8E-11 1E-15 108.2 12.8 107 600-764 3-109 (110)
43 cd04617 CBS_pair_4 The CBS dom 99.3 3.9E-11 8.5E-16 110.7 12.3 111 600-764 2-117 (118)
44 cd04639 CBS_pair_26 The CBS do 99.3 3.4E-11 7.3E-16 109.4 11.7 109 600-764 2-110 (111)
45 cd04586 CBS_pair_BON_assoc Thi 99.3 2.4E-11 5.2E-16 115.0 11.0 132 600-764 3-134 (135)
46 cd04596 CBS_pair_DRTGG_assoc T 99.3 2.8E-11 6.2E-16 109.6 10.8 105 600-764 3-107 (108)
47 cd04803 CBS_pair_15 The CBS do 99.3 4.5E-11 9.8E-16 110.5 11.7 120 600-764 2-121 (122)
48 cd04608 CBS_pair_PALP_assoc Th 99.3 2E-11 4.4E-16 114.1 9.3 112 600-765 3-123 (124)
49 PRK07107 inosine 5-monophospha 99.3 2.4E-11 5.3E-16 138.6 11.7 149 563-766 65-219 (502)
50 cd04624 CBS_pair_11 The CBS do 99.2 8.1E-11 1.8E-15 107.1 12.4 110 600-764 2-111 (112)
51 cd04629 CBS_pair_16 The CBS do 99.2 5.5E-11 1.2E-15 108.4 10.9 112 600-764 2-113 (114)
52 cd04801 CBS_pair_M50_like This 99.2 8.5E-11 1.8E-15 107.5 12.2 109 600-764 2-113 (114)
53 cd04583 CBS_pair_ABC_OpuCA_ass 99.2 1E-10 2.2E-15 105.6 12.5 106 600-764 3-108 (109)
54 cd04623 CBS_pair_10 The CBS do 99.2 9.8E-11 2.1E-15 106.4 12.4 111 600-764 2-112 (113)
55 cd04595 CBS_pair_DHH_polyA_Pol 99.2 1E-10 2.2E-15 106.1 12.5 107 600-764 3-109 (110)
56 cd04607 CBS_pair_NTP_transfera 99.2 1E-10 2.2E-15 106.8 12.4 109 601-764 4-112 (113)
57 cd04630 CBS_pair_17 The CBS do 99.2 1E-10 2.2E-15 107.0 12.2 112 600-764 2-113 (114)
58 cd04631 CBS_pair_18 The CBS do 99.2 1E-10 2.3E-15 108.6 12.1 123 600-765 2-125 (125)
59 cd04627 CBS_pair_14 The CBS do 99.2 1.5E-10 3.2E-15 107.6 13.1 120 600-763 2-121 (123)
60 cd04613 CBS_pair_SpoIVFB_EriC_ 99.2 1E-10 2.2E-15 106.4 11.6 112 600-764 2-113 (114)
61 cd04582 CBS_pair_ABC_OpuCA_ass 99.2 1.2E-10 2.7E-15 104.8 11.9 104 600-764 2-105 (106)
62 cd04615 CBS_pair_2 The CBS dom 99.2 1.2E-10 2.5E-15 106.2 11.9 111 600-764 2-112 (113)
63 cd04635 CBS_pair_22 The CBS do 99.2 8.9E-11 1.9E-15 108.5 11.0 120 600-764 2-121 (122)
64 cd04614 CBS_pair_1 The CBS dom 99.2 1.4E-10 3E-15 103.3 11.8 94 600-764 2-95 (96)
65 PRK11573 hypothetical protein; 99.2 1E-10 2.2E-15 131.3 13.4 135 586-774 184-318 (413)
66 cd04604 CBS_pair_KpsF_GutQ_ass 99.2 1.3E-10 2.8E-15 105.9 11.3 111 600-764 3-113 (114)
67 cd04588 CBS_pair_CAP-ED_DUF294 99.2 2.3E-10 4.9E-15 103.8 12.7 108 600-764 2-109 (110)
68 cd04632 CBS_pair_19 The CBS do 99.2 1.8E-10 4E-15 107.6 12.4 127 600-765 2-128 (128)
69 cd04636 CBS_pair_23 The CBS do 99.2 1.6E-10 3.4E-15 108.9 11.7 130 600-764 2-131 (132)
70 cd04642 CBS_pair_29 The CBS do 99.2 2.1E-10 4.6E-15 107.1 12.5 124 600-764 2-125 (126)
71 TIGR01137 cysta_beta cystathio 99.2 1.2E-10 2.5E-15 133.5 12.8 146 562-766 307-453 (454)
72 TIGR01302 IMP_dehydrog inosine 99.2 1.5E-10 3.2E-15 131.7 13.2 121 588-766 79-200 (450)
73 cd04626 CBS_pair_13 The CBS do 99.2 2.2E-10 4.8E-15 104.1 11.9 109 600-764 2-110 (111)
74 cd04637 CBS_pair_24 The CBS do 99.2 2.5E-10 5.4E-15 105.6 12.4 121 600-765 2-122 (122)
75 cd04622 CBS_pair_9 The CBS dom 99.2 2.8E-10 6.1E-15 103.5 12.4 111 600-764 2-112 (113)
76 cd04612 CBS_pair_SpoIVFB_EriC_ 99.2 2.7E-10 5.9E-15 103.2 12.2 109 600-764 2-110 (111)
77 cd04620 CBS_pair_7 The CBS dom 99.2 2.5E-10 5.4E-15 104.5 12.0 110 600-764 2-114 (115)
78 cd04585 CBS_pair_ACT_assoc2 Th 99.2 2.6E-10 5.7E-15 104.9 12.1 120 600-764 2-121 (122)
79 cd04602 CBS_pair_IMPDH_2 This 99.2 2.2E-10 4.9E-15 104.9 11.5 109 600-764 3-113 (114)
80 PRK14869 putative manganese-de 99.2 1.8E-10 4E-15 134.8 13.7 161 589-767 68-304 (546)
81 cd04591 CBS_pair_EriC_assoc_eu 99.2 4E-10 8.6E-15 102.0 12.6 102 600-764 3-104 (105)
82 cd04587 CBS_pair_CAP-ED_DUF294 99.2 2.8E-10 6E-15 103.6 11.6 111 600-764 2-112 (113)
83 cd04611 CBS_pair_PAS_GGDEF_DUF 99.2 3.7E-10 8E-15 102.3 12.4 109 600-764 2-110 (111)
84 PTZ00314 inosine-5'-monophosph 99.2 1.7E-10 3.7E-15 132.0 12.4 126 590-776 97-224 (495)
85 cd04643 CBS_pair_30 The CBS do 99.2 2.7E-10 5.9E-15 104.2 11.4 115 600-765 2-116 (116)
86 TIGR01303 IMP_DH_rel_1 IMP deh 99.2 1.6E-10 3.4E-15 131.2 11.8 121 586-769 85-205 (475)
87 cd04601 CBS_pair_IMPDH This cd 99.1 2.3E-10 4.9E-15 103.5 10.2 106 600-764 3-109 (110)
88 cd04621 CBS_pair_8 The CBS dom 99.1 3.5E-10 7.5E-15 107.4 11.9 133 600-764 2-134 (135)
89 PRK05567 inosine 5'-monophosph 99.1 2.8E-10 6E-15 130.8 12.9 116 590-766 88-204 (486)
90 cd04599 CBS_pair_GGDEF_assoc2 99.1 3.4E-10 7.3E-15 101.6 10.8 103 600-764 2-104 (105)
91 cd04609 CBS_pair_PALP_assoc2 T 99.1 4.2E-10 9.1E-15 101.7 11.2 109 600-765 2-110 (110)
92 cd04625 CBS_pair_12 The CBS do 99.1 7E-10 1.5E-14 100.8 12.6 110 600-764 2-111 (112)
93 cd04640 CBS_pair_27 The CBS do 99.1 3.5E-10 7.5E-15 105.7 10.8 117 600-764 2-125 (126)
94 PLN02274 inosine-5'-monophosph 99.1 3.6E-10 7.8E-15 129.4 13.1 115 595-767 106-222 (505)
95 cd04590 CBS_pair_CorC_HlyC_ass 99.1 6.9E-10 1.5E-14 100.7 12.4 109 600-764 2-110 (111)
96 cd04800 CBS_pair_CAP-ED_DUF294 99.1 6.4E-10 1.4E-14 101.0 12.0 109 600-764 2-110 (111)
97 TIGR00400 mgtE Mg2+ transporte 99.1 2.2E-10 4.7E-15 130.5 11.0 123 587-771 129-256 (449)
98 cd02205 CBS_pair The CBS domai 99.1 7.1E-10 1.5E-14 99.6 12.1 111 600-764 2-112 (113)
99 cd04802 CBS_pair_3 The CBS dom 99.1 9.1E-10 2E-14 100.1 12.7 110 600-764 2-111 (112)
100 cd04589 CBS_pair_CAP-ED_DUF294 99.1 9.7E-10 2.1E-14 99.8 12.2 109 600-764 2-110 (111)
101 COG0517 FOG: CBS domain [Gener 99.1 1.4E-09 3.1E-14 99.4 13.1 113 593-763 3-117 (117)
102 TIGR00393 kpsF KpsF/GutQ famil 99.1 4E-10 8.7E-15 119.9 10.8 114 588-758 154-268 (268)
103 COG1253 TlyC Hemolysins and re 99.1 1E-09 2.2E-14 124.4 13.9 133 586-774 203-335 (429)
104 cd04594 CBS_pair_EriC_assoc_ar 99.1 1.2E-09 2.6E-14 98.3 11.5 100 602-764 4-103 (104)
105 cd04610 CBS_pair_ParBc_assoc T 99.1 1E-09 2.2E-14 98.8 10.8 104 600-764 3-106 (107)
106 cd04606 CBS_pair_Mg_transporte 99.1 5.9E-10 1.3E-14 101.1 9.3 102 604-765 2-108 (109)
107 cd04584 CBS_pair_ACT_assoc Thi 99.1 1.4E-09 3.1E-14 100.2 11.5 119 600-764 2-120 (121)
108 cd04633 CBS_pair_20 The CBS do 99.0 1.4E-09 3E-14 100.4 11.0 120 600-765 2-121 (121)
109 cd04634 CBS_pair_21 The CBS do 99.0 2.3E-09 4.9E-14 102.8 12.7 136 600-764 2-142 (143)
110 cd04598 CBS_pair_GGDEF_assoc T 99.0 1.7E-09 3.6E-14 99.5 11.3 113 600-764 2-118 (119)
111 PF00654 Voltage_CLC: Voltage 99.0 2.6E-09 5.7E-14 118.3 13.9 185 88-297 163-354 (355)
112 cd04638 CBS_pair_25 The CBS do 99.0 3.1E-09 6.7E-14 95.8 11.3 104 600-764 2-105 (106)
113 cd03685 ClC_6_like ClC-6-like 99.0 5.4E-09 1.2E-13 119.5 14.5 187 329-559 29-241 (466)
114 COG4536 CorB Putative Mg2+ and 99.0 2.4E-09 5.2E-14 113.3 10.3 132 586-771 197-328 (423)
115 cd03684 ClC_3_like ClC-3-like 99.0 1.6E-08 3.4E-13 115.1 17.5 190 88-299 206-427 (445)
116 COG2905 Predicted signal-trans 98.9 2.7E-09 5.8E-14 118.3 9.6 125 586-767 146-270 (610)
117 COG0038 EriC Chloride channel 98.9 1.8E-08 4E-13 114.3 15.6 180 90-298 236-417 (443)
118 PRK03655 putative ion channel 98.9 2.4E-08 5.2E-13 112.2 16.2 172 88-296 222-397 (414)
119 cd04592 CBS_pair_EriC_assoc_eu 98.8 2.2E-08 4.7E-13 95.0 10.1 116 600-744 2-117 (133)
120 cd01036 ClC_euk Chloride chann 98.8 4.7E-08 1E-12 110.4 14.0 100 462-561 88-202 (416)
121 COG4535 CorC Putative Mg2+ and 98.8 1.1E-08 2.4E-13 101.7 7.2 132 587-774 65-196 (293)
122 COG2239 MgtE Mg/Co/Ni transpor 98.7 2E-08 4.4E-13 112.4 8.7 123 589-773 132-259 (451)
123 cd03683 ClC_1_like ClC-1-like 98.7 1.1E-07 2.4E-12 107.6 14.3 183 334-560 3-202 (426)
124 PF00571 CBS: CBS domain CBS d 98.7 2.5E-08 5.4E-13 79.6 6.1 55 708-767 2-56 (57)
125 KOG2550 IMP dehydrogenase/GMP 98.5 1.8E-07 3.9E-12 99.9 8.1 122 600-780 117-238 (503)
126 PF00571 CBS: CBS domain CBS d 98.5 3.9E-07 8.6E-12 72.5 6.6 56 591-659 1-56 (57)
127 KOG1764 5'-AMP-activated prote 98.3 4.2E-06 9.1E-11 92.9 12.2 125 600-770 238-362 (381)
128 TIGR01186 proV glycine betaine 98.2 1.4E-05 3E-10 88.5 12.6 108 601-768 252-359 (363)
129 COG3448 CBS-domain-containing 98.2 1.3E-06 2.7E-11 89.9 4.0 58 704-766 244-301 (382)
130 PRK10070 glycine betaine trans 98.1 1.5E-05 3.3E-10 89.2 11.9 120 589-768 274-394 (400)
131 cd04597 CBS_pair_DRTGG_assoc2 97.8 3.3E-05 7.2E-10 70.8 5.4 55 705-764 58-112 (113)
132 cd04597 CBS_pair_DRTGG_assoc2 97.8 5.1E-05 1.1E-09 69.6 6.3 54 589-655 58-111 (113)
133 PRK14869 putative manganese-de 97.7 8.3E-06 1.8E-10 95.8 0.7 157 571-765 222-391 (546)
134 TIGR00400 mgtE Mg2+ transporte 97.6 7.1E-05 1.5E-09 85.6 4.9 112 589-767 195-306 (449)
135 COG3620 Predicted transcriptio 97.5 8.8E-05 1.9E-09 70.1 4.1 62 703-770 63-124 (187)
136 COG2524 Predicted transcriptio 97.4 0.00016 3.5E-09 73.6 4.9 58 706-769 173-230 (294)
137 cd04603 CBS_pair_KefB_assoc Th 97.4 0.00028 6E-09 64.0 5.7 55 589-656 56-110 (111)
138 cd04618 CBS_pair_5 The CBS dom 97.4 0.0003 6.4E-09 62.7 5.7 48 715-766 3-50 (98)
139 cd04619 CBS_pair_6 The CBS dom 97.3 0.00035 7.6E-09 63.6 5.3 56 588-656 58-113 (114)
140 cd04641 CBS_pair_28 The CBS do 97.3 0.00052 1.1E-08 63.1 6.4 48 714-766 2-49 (120)
141 smart00116 CBS Domain in cysta 97.2 0.00071 1.5E-08 50.3 5.3 46 715-765 2-47 (49)
142 cd04592 CBS_pair_EriC_assoc_eu 97.2 0.00089 1.9E-08 63.4 6.6 49 714-767 2-50 (133)
143 cd04614 CBS_pair_1 The CBS dom 97.1 0.00092 2E-08 59.1 6.1 47 714-765 2-48 (96)
144 cd04608 CBS_pair_PALP_assoc Th 97.1 0.0013 2.9E-08 61.1 7.1 51 713-768 2-52 (124)
145 PRK05567 inosine 5'-monophosph 97.0 0.0014 3E-08 75.9 7.7 57 589-658 147-204 (486)
146 KOG0475 Cl- channel CLC-3 and 96.9 0.0051 1.1E-07 70.1 10.9 173 89-275 309-495 (696)
147 cd04607 CBS_pair_NTP_transfera 96.9 0.0015 3.3E-08 59.1 5.6 54 589-655 58-111 (113)
148 cd04582 CBS_pair_ABC_OpuCA_ass 96.9 0.0019 4.1E-08 57.6 6.1 48 713-765 1-48 (106)
149 cd04600 CBS_pair_HPP_assoc Thi 96.9 0.0015 3.3E-08 60.0 5.5 57 587-656 67-123 (124)
150 cd04606 CBS_pair_Mg_transporte 96.9 0.0015 3.2E-08 58.8 5.4 57 588-657 52-108 (109)
151 cd04585 CBS_pair_ACT_assoc2 Th 96.9 0.0018 3.9E-08 59.0 5.7 57 587-656 65-121 (122)
152 cd04620 CBS_pair_7 The CBS dom 96.9 0.0016 3.6E-08 59.0 5.4 56 588-656 57-114 (115)
153 PRK10892 D-arabinose 5-phospha 96.9 0.0014 3.1E-08 71.8 5.9 58 704-766 201-260 (326)
154 PRK11543 gutQ D-arabinose 5-ph 96.9 0.0013 2.9E-08 71.9 5.6 57 705-766 197-255 (321)
155 cd04624 CBS_pair_11 The CBS do 96.9 0.0028 6.1E-08 57.0 6.8 49 714-767 2-50 (112)
156 cd04617 CBS_pair_4 The CBS dom 96.8 0.0031 6.8E-08 57.7 6.7 49 714-767 2-50 (118)
157 cd04596 CBS_pair_DRTGG_assoc T 96.8 0.0022 4.8E-08 57.6 5.5 56 588-656 52-107 (108)
158 COG2905 Predicted signal-trans 96.8 0.0015 3.2E-08 73.6 5.1 64 706-774 150-213 (610)
159 cd04605 CBS_pair_MET2_assoc Th 96.8 0.0033 7.2E-08 56.4 6.6 49 713-766 2-50 (110)
160 cd04627 CBS_pair_14 The CBS do 96.8 0.0026 5.6E-08 58.7 5.9 52 591-655 70-121 (123)
161 cd04615 CBS_pair_2 The CBS dom 96.8 0.0026 5.6E-08 57.4 5.8 56 587-655 56-111 (113)
162 smart00116 CBS Domain in cysta 96.8 0.0039 8.4E-08 46.2 5.8 47 601-658 2-48 (49)
163 cd04643 CBS_pair_30 The CBS do 96.7 0.0031 6.6E-08 57.2 6.2 49 714-767 2-50 (116)
164 cd04625 CBS_pair_12 The CBS do 96.7 0.0026 5.7E-08 57.3 5.7 54 589-656 58-111 (112)
165 cd04630 CBS_pair_17 The CBS do 96.7 0.0038 8.3E-08 56.6 6.8 49 714-767 2-51 (114)
166 cd04621 CBS_pair_8 The CBS dom 96.7 0.0029 6.2E-08 59.8 6.1 56 587-656 79-134 (135)
167 cd04613 CBS_pair_SpoIVFB_EriC_ 96.7 0.0031 6.7E-08 56.7 6.0 48 714-766 2-49 (114)
168 cd04640 CBS_pair_27 The CBS do 96.7 0.0032 6.9E-08 58.4 6.2 46 714-764 2-47 (126)
169 cd04593 CBS_pair_EriC_assoc_ba 96.7 0.0039 8.4E-08 56.6 6.4 49 714-767 2-50 (115)
170 cd04610 CBS_pair_ParBc_assoc T 96.7 0.0031 6.6E-08 56.2 5.6 55 589-656 52-106 (107)
171 cd04604 CBS_pair_KpsF_GutQ_ass 96.7 0.003 6.4E-08 57.0 5.5 55 589-656 59-113 (114)
172 cd04803 CBS_pair_15 The CBS do 96.7 0.0028 6E-08 58.1 5.4 57 587-656 65-121 (122)
173 cd04623 CBS_pair_10 The CBS do 96.7 0.0044 9.5E-08 55.7 6.7 49 714-767 2-50 (113)
174 PRK07107 inosine 5-monophospha 96.7 0.0029 6.2E-08 73.0 6.6 59 588-657 160-218 (502)
175 KOG1764 5'-AMP-activated prote 96.7 0.0092 2E-07 66.5 10.4 133 600-776 163-295 (381)
176 cd04642 CBS_pair_29 The CBS do 96.7 0.0027 5.8E-08 58.9 5.3 49 714-767 2-50 (126)
177 cd04587 CBS_pair_CAP-ED_DUF294 96.7 0.0025 5.5E-08 57.4 5.0 54 589-655 58-111 (113)
178 TIGR01137 cysta_beta cystathio 96.6 0.0029 6.3E-08 72.7 6.4 59 704-767 334-392 (454)
179 cd04801 CBS_pair_M50_like This 96.6 0.0039 8.6E-08 56.4 6.0 49 714-767 2-51 (114)
180 cd04611 CBS_pair_PAS_GGDEF_DUF 96.6 0.0036 7.9E-08 56.1 5.6 57 587-656 54-110 (111)
181 cd04635 CBS_pair_22 The CBS do 96.6 0.0035 7.5E-08 57.4 5.5 57 587-656 65-121 (122)
182 cd04632 CBS_pair_19 The CBS do 96.6 0.005 1.1E-07 57.1 6.6 48 714-766 2-49 (128)
183 cd04602 CBS_pair_IMPDH_2 This 96.6 0.0039 8.5E-08 56.6 5.7 55 589-656 57-113 (114)
184 cd04629 CBS_pair_16 The CBS do 96.6 0.0039 8.5E-08 56.2 5.5 49 714-767 2-50 (114)
185 cd04639 CBS_pair_26 The CBS do 96.5 0.0036 7.9E-08 56.2 5.2 54 589-655 56-109 (111)
186 cd04583 CBS_pair_ABC_OpuCA_ass 96.5 0.0043 9.2E-08 55.4 5.6 54 589-655 54-107 (109)
187 cd04802 CBS_pair_3 The CBS dom 96.5 0.0044 9.5E-08 55.8 5.6 54 588-655 57-110 (112)
188 cd04601 CBS_pair_IMPDH This cd 96.5 0.004 8.7E-08 55.7 5.3 55 588-655 53-108 (110)
189 PRK07807 inosine 5-monophospha 96.5 0.0044 9.6E-08 71.1 6.7 56 704-764 88-143 (479)
190 cd04590 CBS_pair_CorC_HlyC_ass 96.5 0.0055 1.2E-07 55.0 6.2 50 714-768 2-52 (111)
191 cd04622 CBS_pair_9 The CBS dom 96.5 0.0036 7.9E-08 56.3 5.0 55 589-656 58-112 (113)
192 TIGR00393 kpsF KpsF/GutQ famil 96.5 0.0035 7.5E-08 66.6 5.5 58 704-766 154-212 (268)
193 cd04631 CBS_pair_18 The CBS do 96.5 0.0043 9.4E-08 57.0 5.5 56 588-656 69-124 (125)
194 TIGR01302 IMP_dehydrog inosine 96.5 0.0049 1.1E-07 70.6 6.9 57 703-764 78-137 (450)
195 cd04800 CBS_pair_CAP-ED_DUF294 96.5 0.0041 8.9E-08 55.9 5.1 55 588-656 56-110 (111)
196 cd04588 CBS_pair_CAP-ED_DUF294 96.5 0.0048 1E-07 55.3 5.5 54 589-655 55-108 (110)
197 cd04636 CBS_pair_23 The CBS do 96.5 0.0046 1E-07 57.8 5.5 49 714-767 2-50 (132)
198 cd04595 CBS_pair_DHH_polyA_Pol 96.5 0.0053 1.1E-07 55.1 5.7 54 588-655 55-108 (110)
199 cd04586 CBS_pair_BON_assoc Thi 96.4 0.0043 9.2E-08 58.3 5.2 55 588-656 80-134 (135)
200 cd02205 CBS_pair The CBS domai 96.4 0.0084 1.8E-07 53.1 6.8 51 714-769 2-52 (113)
201 cd04589 CBS_pair_CAP-ED_DUF294 96.4 0.0059 1.3E-07 54.9 5.6 55 588-656 56-110 (111)
202 cd04591 CBS_pair_EriC_assoc_eu 96.4 0.0056 1.2E-07 55.0 5.3 49 594-656 56-104 (105)
203 COG0517 FOG: CBS domain [Gener 96.4 0.0061 1.3E-07 55.2 5.7 52 590-654 63-116 (117)
204 cd04612 CBS_pair_SpoIVFB_EriC_ 96.4 0.0067 1.4E-07 54.3 5.8 55 589-656 56-110 (111)
205 cd04633 CBS_pair_20 The CBS do 96.3 0.0052 1.1E-07 56.1 5.0 56 587-656 65-120 (121)
206 PLN02274 inosine-5'-monophosph 96.3 0.0064 1.4E-07 70.3 6.8 62 588-660 162-223 (505)
207 TIGR01303 IMP_DH_rel_1 IMP deh 96.3 0.0065 1.4E-07 69.7 6.6 59 589-660 146-204 (475)
208 cd04626 CBS_pair_13 The CBS do 96.3 0.0094 2E-07 53.6 6.5 48 714-766 2-49 (111)
209 cd04584 CBS_pair_ACT_assoc Thi 96.3 0.0067 1.4E-07 55.4 5.5 48 714-766 2-49 (121)
210 cd04599 CBS_pair_GGDEF_assoc2 96.3 0.0072 1.6E-07 53.6 5.5 53 589-655 51-103 (105)
211 cd04594 CBS_pair_EriC_assoc_ar 96.2 0.0083 1.8E-07 53.5 5.5 53 590-656 51-103 (104)
212 cd04609 CBS_pair_PALP_assoc2 T 96.1 0.012 2.5E-07 52.6 5.9 48 714-767 2-49 (110)
213 cd04637 CBS_pair_24 The CBS do 96.1 0.0095 2.1E-07 54.5 5.5 55 589-656 67-121 (122)
214 COG4109 Predicted transcriptio 96.1 0.01 2.2E-07 63.3 6.2 62 586-660 246-307 (432)
215 PTZ00314 inosine-5'-monophosph 95.9 0.011 2.3E-07 68.4 6.0 55 707-763 98-152 (495)
216 TIGR03520 GldE gliding motilit 95.9 0.012 2.7E-07 66.5 6.0 56 706-765 192-249 (408)
217 cd04634 CBS_pair_21 The CBS do 95.7 0.018 3.9E-07 54.8 5.8 48 714-767 2-49 (143)
218 KOG0474 Cl- channel CLC-7 and 95.7 0.029 6.2E-07 64.1 7.8 97 463-559 190-301 (762)
219 PRK15094 magnesium/cobalt effl 95.6 0.017 3.7E-07 62.3 5.7 57 706-766 68-126 (292)
220 COG4175 ProV ABC-type proline/ 95.5 0.018 3.9E-07 61.1 5.1 112 587-767 272-383 (386)
221 cd04598 CBS_pair_GGDEF_assoc T 95.5 0.026 5.6E-07 51.3 5.7 55 588-655 60-117 (119)
222 TIGR03415 ABC_choXWV_ATP choli 95.3 0.042 9E-07 61.5 7.5 49 712-767 332-380 (382)
223 cd04638 CBS_pair_25 The CBS do 95.2 0.045 9.8E-07 48.6 6.2 45 715-764 3-47 (106)
224 COG2239 MgtE Mg/Co/Ni transpor 94.6 0.044 9.5E-07 62.2 5.2 61 587-660 194-254 (451)
225 TIGR01186 proV glycine betaine 94.2 0.089 1.9E-06 58.5 6.5 57 590-660 303-359 (363)
226 PRK10070 glycine betaine trans 92.2 0.27 5.8E-06 55.5 6.5 57 590-660 338-394 (400)
227 KOG2118 Predicted membrane pro 91.4 0.26 5.6E-06 57.0 5.3 135 586-775 201-336 (498)
228 KOG2550 IMP dehydrogenase/GMP 90.7 0.26 5.6E-06 53.9 4.2 57 588-657 170-226 (503)
229 PRK11573 hypothetical protein; 90.7 0.47 1E-05 53.8 6.5 57 706-766 188-246 (413)
230 COG1253 TlyC Hemolysins and re 88.2 0.81 1.8E-05 52.2 6.1 61 706-770 207-269 (429)
231 COG4535 CorC Putative Mg2+ and 87.4 0.63 1.4E-05 47.5 3.9 61 707-771 69-131 (293)
232 KOG0476 Cl- channel CLC-2 and 81.6 0.89 1.9E-05 53.5 2.3 67 704-773 587-653 (931)
233 TIGR03415 ABC_choXWV_ATP choli 80.4 3 6.6E-05 46.8 6.0 55 590-660 327-381 (382)
234 COG1125 OpuBA ABC-type proline 72.2 5.4 0.00012 41.8 4.6 43 718-765 266-308 (309)
235 COG4175 ProV ABC-type proline/ 67.9 9.3 0.0002 41.3 5.4 53 594-660 332-384 (386)
236 PF10518 TAT_signal: TAT (twin 63.8 4.5 9.7E-05 26.8 1.4 23 242-264 3-25 (26)
237 TIGR02865 spore_II_E stage II 60.8 4.1E+02 0.0088 32.9 21.7 83 488-571 197-289 (764)
238 PRK02509 hypothetical protein; 45.4 5.6E+02 0.012 32.3 15.8 21 331-351 325-345 (973)
239 COG1125 OpuBA ABC-type proline 44.8 30 0.00065 36.4 4.4 36 610-656 272-307 (309)
240 PF01102 Glycophorin_A: Glycop 43.5 31 0.00067 32.1 3.9 17 334-350 66-82 (122)
241 PF10399 UCR_Fe-S_N: Ubiquitin 36.8 18 0.0004 26.8 1.1 21 239-259 7-29 (41)
242 PRK14216 camphor resistance pr 34.1 49 0.0011 31.2 3.8 51 242-299 5-55 (132)
243 COG4536 CorB Putative Mg2+ and 31.9 69 0.0015 35.5 4.9 58 591-659 267-324 (423)
244 PF06072 Herpes_US9: Alphaherp 31.4 2.7E+02 0.0058 22.5 6.7 8 61-68 3-10 (60)
245 KOG1278 Endosomal membrane pro 30.1 3.9E+02 0.0085 31.3 10.5 71 255-351 317-387 (628)
246 PF10754 DUF2569: Protein of u 29.2 5.2E+02 0.011 24.7 11.4 25 87-111 8-32 (149)
247 PF04550 Phage_holin_2: Phage 28.2 2.4E+02 0.0052 24.7 6.5 52 469-522 22-73 (89)
248 PF13829 DUF4191: Domain of un 25.8 2.3E+02 0.0049 29.3 7.1 19 134-152 52-70 (224)
249 COG2216 KdpB High-affinity K+ 24.4 69 0.0015 36.9 3.4 49 722-776 413-461 (681)
250 PF04165 DUF401: Protein of un 23.0 6.6E+02 0.014 28.3 10.8 25 510-534 327-351 (385)
251 COG5336 Uncharacterized protei 20.2 2.9E+02 0.0064 25.1 5.7 46 286-349 48-93 (116)
No 1
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-174 Score=1404.33 Aligned_cols=734 Identities=58% Similarity=0.972 Sum_probs=698.9
Q ss_pred CCCCCccccccccccccCCCCCchhhccCcCCCCCCCCcccccchhhhHhhhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 003966 23 RDPESNSLQQPLLKRSRTLSSSPLALVGAKVSHIESLDYEINENDLFKHDWRSRSKVQVLQYIFLKWSLACLVGLLTGLI 102 (783)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~esldy~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~liGv~~Glv 102 (783)
+++++..+++|++.+++++..++.++.++++++|||||||+.||+.|+|+||+|.+.+.++|.+.||+++++||+++|++
T Consensus 22 e~~~s~~l~~~l~~~~~t~~~~d~~i~~~k~~~yESLDYei~ENdlf~e~~r~~~k~~~~~y~~~kW~~~~lIGi~TgLv 101 (762)
T KOG0474|consen 22 ETRRSVALPEELTISGETQELDDLEILGAKVCDYESLDYEICENDLFLEDWRTRDKKKGRRYEAVKWMVCFLIGICTGLV 101 (762)
T ss_pred cCccccccccchhhcCCccccchhhhhcCCCCCccccchhhhcchHHHHHHHhhcccceeeeehHHHHHHHHHHHHHHHH
Confidence 34444458899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc-----cchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhCCCCC
Q 003966 103 ATLINLAVENIAGYKLLAVVSFIEKDR-----YLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEIKAYLNGVDTP 177 (783)
Q Consensus 103 a~~~~~~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~~lng~~~~ 177 (783)
|+++|..+|++.++|+..+.+.+.+.+ ++..++.|.++|++++++++.++.+++|.|+||||||||+||||+++|
T Consensus 102 a~fidl~Ven~ag~Kf~~v~~~v~~~~s~~g~~~~~~l~~~g~Nl~lv~~as~lv~~iaP~AAGSGIPevK~YLNGV~iP 181 (762)
T KOG0474|consen 102 ALFIDLFVENFAGLKFGVVQNSVEECRSQKGCLALSLLVLLGFNLVLVFLASVLVAYIAPVAAGSGIPEVKCYLNGVKIP 181 (762)
T ss_pred HHHHHHHHHHhhchhHHHHHHHHHHhhhccccHHHHHHHHHHHhHHHHHHHHHHHHeechhccCCCCchhhhhhcCccCc
Confidence 999999999999999999988887766 889999999999999999999999999999999999999999999999
Q ss_pred CcchhHHHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHhhcCCCCcccchhhhhhccCCcchhhhHHHhhhhhhhhh
Q 003966 178 NMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCA 257 (783)
Q Consensus 178 ~~l~~~tl~~K~~~~~~sv~sG~s~G~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv~~GaAAGvaa 257 (783)
+.+++||+++|++|++++|++|+.+||||||||.|||||+.++||+|.+++++|||+||||||+||||+++||+||||||
T Consensus 182 ~ivrl~TL~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S~~~r~~~r~fr~FrnDrdrRD~VscGaAAGVaA 261 (762)
T KOG0474|consen 182 GIVRLRTLIVKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGSTSLRKDWRWFRYFRNDRDRRDLVSCGAAAGVAA 261 (762)
T ss_pred ceeehhhhHHhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCccchhhhhhhhhhhcccchhhhhhhcchHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCcccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCcceeeeecCCcccccchhhhHHH
Q 003966 258 AFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVT 337 (783)
Q Consensus 258 aF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~~~~~~~~~~~~~fg~~~~~~f~~~~~~~~~~~~~l~~~i 337 (783)
||+||+|||||++||.++||++.++||+||+++++++++|.++.+|.+|+|+.|+.+++++|++.+....|+.+|+++++
T Consensus 262 AF~APvGGvLFaLEE~aS~Wnq~L~WR~fFss~i~~f~l~~~i~~~~~G~~g~f~~~GLi~f~vf~~~~~y~~~el~~f~ 341 (762)
T KOG0474|consen 262 AFRAPVGGVLFALEEGASWWNQALLWRTFFSSAIVAFVLRAFILSCLSGKCGLFGKGGLINFDVFDGPVDYHIHELPPFL 341 (762)
T ss_pred HhCCCccceEEEechhhHHHHhhHHHHHHHHhHHHHHhHHHHHHHHhcCchhccCCcceEEecccCCcccccccccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999877899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHhhhhccccccccCCCCCCCCC-CCCCCCCCCCc
Q 003966 338 LIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPE-TCPTNGRSGNF 416 (783)
Q Consensus 338 ~lGv~~Gllg~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~-~~p~~g~~g~~ 416 (783)
++||+||++|++||++|.+...++.+ +.|++..|++++++++++|+++.|.+|++++|+|||.+..+ .||+
T Consensus 342 ~iGViGGlLGalfN~Ln~~~~~~r~~-~~k~k~~kvlea~~Vs~~ts~~af~l~~l~~C~P~~~~~~~~~~p~------- 413 (762)
T KOG0474|consen 342 LIGVIGGLLGALFNYLNLKKVLRRYN-YEKGKIGKVLEALLVSLVTSVLAFGLPFLADCQPCPPSITEGQCPT------- 413 (762)
T ss_pred EeehhhhhHHHHHHHHHHHHHHHHHh-ccCchHHHHHHHHHHHHHHHHHHhhhHHHhcCCCCCCCcccccCcc-------
Confidence 99999999999999998887776655 67788999999999999999999999999999999987655 7774
Q ss_pred ccccCCCCCchhhHHHhhcCcHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHhhcCccccccchHHHHHHHHHHHHH
Q 003966 417 KQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLL 496 (783)
Q Consensus 417 ~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~l~~~~~~k~~lt~~t~g~g~~gG~f~P~l~iGa~~G~l~ 496 (783)
|+||+|+|||+|+++|||+||+||++||.++ ++|++.+|++|++++++++++|||+.+|+|+|+|++++||++||++
T Consensus 414 --f~Cp~~~YNdlAtL~fnt~ddaVrnLFh~~~-~ef~~~tL~iFfv~yf~L~~~TfGi~vpsGlFiP~iL~GAa~GRlv 490 (762)
T KOG0474|consen 414 --FFCPDGEYNDLATLFFNTNDDAVRNLFHSPT-NEFGILTLAIFFVLYFFLACWTFGIAVPSGLFIPVILTGAAYGRLV 490 (762)
T ss_pred --ccCCCCchhHHHHHHcCCcHHHHHHHhcCCC-CccchhHHHHHHHHHHHHHHHHhcccccccchhHHHHhhHHHHHHH
Confidence 8999999999999999999999999999987 9999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCcchHHHHHHHhhhhhhhhhchhHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhcCccHHHHHHHhcCCC
Q 003966 497 GMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLP 576 (783)
Q Consensus 497 g~~~~~~~~~~~~~~alvGaaa~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~~~~iy~~~l~~kg~p 576 (783)
|+++....++|||.||++||||+|||++|||+|+|||++|+| +..+++|+|++.++||+|+|.||+++||.++++||+|
T Consensus 491 g~~l~~~~~id~G~yAllGAAa~LGG~mRMTvSL~VIl~E~T-n~~~~lPiMlvLliaK~VGD~FNegiYd~~i~LkgvP 569 (762)
T KOG0474|consen 491 GMLLGSYTNIDPGLYALLGAAAFLGGVMRMTVSLCVILLELT-NNLLLLPIMLVLLIAKTVGDSFNEGIYDIIIQLKGVP 569 (762)
T ss_pred HHHHHHhhccCchHHHHHhHHHHhCCeEEEEeeeehHHHHhh-hhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhccCCc
Confidence 999999889999999999999999999999999999999999 4577778899999999999999999999999999999
Q ss_pred CCCCCCCCcccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHH
Q 003966 577 FLDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 656 (783)
Q Consensus 577 ~l~~~~~~~l~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~ 656 (783)
+|+|+++++|++++|+|+|++ |+++++..++|+.++++|++|.||+|||||+. +. ++.++++|+|.|+||++
T Consensus 570 ~Le~~pe~~mr~L~a~ev~~~--pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~---~~---~~~~~l~GlILRshl~v 641 (762)
T KOG0474|consen 570 FLEWEPEPYMRNLTAGEVMSK--PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEP---PS---NEAGRLHGLILRSHLLV 641 (762)
T ss_pred cccCCCchHhhhhhHhhhccC--CeEEEechhhHHHHHHHHHhcCcCCCccccCC---CC---ccchhhhHHHHHHHHHH
Confidence 999999999999999999999 99999999999999999999999999999986 21 23379999999999999
Q ss_pred HHHhchhhhhhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCC
Q 003966 657 ALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGL 736 (783)
Q Consensus 657 lL~~~~f~~~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~gl 736 (783)
+|++++|.++.++...+..++.++.+|++++..+++|++++++|+++++|++|+||++|++|+++||+++++.+||+.|+
T Consensus 642 lL~~~~f~~~~~~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGL 721 (762)
T KOG0474|consen 642 LLKKRVFVEESRSTFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGL 721 (762)
T ss_pred HHHhhhhhccCccccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcc
Confidence 99999998765555555566789999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeeccccCCCCcEEEEEehhhchhhHhhhhCCccccccCCC
Q 003966 737 RHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLERSKSGQ 781 (783)
Q Consensus 737 r~lpVVd~~~~~~~~~vvGIITr~DLl~~~~~~~~~~l~~~~~~~ 781 (783)
||+.||++ .++++||+||+|+++++..+.+|+..+.|.++
T Consensus 722 RhLlVv~~-----~~~~~gilTR~D~~~~~~l~~~~~v~~~~~~~ 761 (762)
T KOG0474|consen 722 RHLLVVPK-----TNRVVGILTRKDLARYRILGLEPHVDELKMGK 761 (762)
T ss_pred eeEEEecC-----CCceeEEEehhhhhhHHHhccccccccccccc
Confidence 99999998 88899999999999999999999999888765
No 2
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.7e-88 Score=736.50 Aligned_cols=577 Identities=29% Similarity=0.529 Sum_probs=471.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HH------H-----hhcccchhHHHHHH
Q 003966 92 ACLVGLLTGLIATLINLAVENIAGYKLLAVV---------------------SF------I-----EKDRYLQGFLYFTG 139 (783)
Q Consensus 92 ~~liGv~~Glva~~~~~~i~~~~~~~~~~~~---------------------~~------~-----~~~~~~~~~~~~~~ 139 (783)
.++||..+|..+.+.+...+| ++|..... .+ . -.+.+...|++|+.
T Consensus 58 ~~~IGl~ag~la~~~di~~~w--D~k~G~C~~~~~~n~~~CC~t~~~~~~c~~~~~w~~~~~~~~~w~~~~~~~~l~y~~ 135 (696)
T KOG0475|consen 58 VLLIGLAAGFLAGLADILTSW--DLKEGYCTPNFWLNHEFCCSTFTEDDVCKEWFFWCEHLGLDFSWTGHYIVSYLIYVL 135 (696)
T ss_pred hhHhHhHHHHhhHHHHhhcch--hhccCcccchhhhhhhhheeeeecCccchhhhhhHHHhccccCCCCcchHHHHHHHH
Confidence 588899999999888888887 33322110 00 0 01234468999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhCCCCCCcchhHHHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHh
Q 003966 140 VNFLLTLVAAVLCVCFAPTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLL 219 (783)
Q Consensus 140 ~~~~~~~~a~~l~~~~~p~a~GsGipev~~~lng~~~~~~l~~~tl~~K~~~~~~sv~sG~s~G~EGP~vhiGa~igs~l 219 (783)
+++.+++++..+++.++|.|.||||||+|+.+.|..+++++..+|++.|.++..++++||+|+|||||+||++.|+|+.+
T Consensus 136 ~al~fa~la~~lv~~~AP~A~gSGIpEIK~ilSGf~~~~~lg~~tl~iKsVal~lsvaSGLSlGKEGP~VHiA~c~g~~~ 215 (696)
T KOG0475|consen 136 WALLFAFLAVSLVKVVAPYACGSGIPEIKTILSGFIIRGFLGKWTLLIKSVALCLSVASGLSLGKEGPSVHIATCIGNIF 215 (696)
T ss_pred HHHHHHHHHHHHhhheehhhhcCCCccceeeeccchhhhhhhHHHHhhhhhhheeeeccccccCCCCCceeeeechhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCcccchhhhhh-ccCCcchhhhHHHhhhhhhhhhhccCcccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHH
Q 003966 220 GQGGPDNHRIKWQWLR-YFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRA 298 (783)
Q Consensus 220 ~~~~s~~~~l~~~~~~-~f~~~~~~r~lv~~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~ 298 (783)
++ +++ |-.|+..+|++++|.+|||||+|||||||||||++||+++++..+.+|+.|||+.+|+++++.
T Consensus 216 s~-----------~f~~~~~~e~~~reilsAaaAaGvavaFgAPIGGVlFslEev~~~fp~ktlw~sff~aLsAv~~L~~ 284 (696)
T KOG0475|consen 216 SK-----------IFPKYRLNEAKKREILSAAAAAGVAVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALSAVTALRS 284 (696)
T ss_pred hh-----------hhhhhccchhHHHHHHHHHhhccchhhcCCccceeeeehhhhhhcCCccchHHHHHHHHHHHHHHee
Confidence 87 444 334788999999999999999999999999999999999999999999999999999999986
Q ss_pred HHHHHhcCCccccCCCcceeeeecCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHH
Q 003966 299 FIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALS 378 (783)
Q Consensus 299 ~~~~~~~~~~~~fg~~~~~~f~~~~~~~~~~~~~l~~~i~lGv~~Gllg~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (783)
. ..|+++...+|.+.. ..+|++.|+++|+++|++||+.|.+|.++|.++.++++.. +...++++++++
T Consensus 285 i---------~pf~~~~~vLf~V~Y-~~~W~~~EL~pFi~LGifgGl~G~~~ir~n~~~~~~rK~~--~lg~~pv~ev~~ 352 (696)
T KOG0475|consen 285 I---------NPFGNSRLVLFYVDY-DRPWSLFELLPFILLGIFGGLWGAFFIRLNIRFCRFRKSS--KLGKFPVLEVVF 352 (696)
T ss_pred e---------cccCCCceEEEEEec-cCCcccccchHHHHHHHhhhHHHHHHHHHHHHHHhccchh--hccCCcchhHHH
Confidence 5 577888778888874 6889999999999999999999999999999999988765 234578999999
Q ss_pred HHHHHHhhhhccccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCchhhHHHhhcCcHHHHHHhhcCCCCC------C
Q 003966 379 VSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPT------E 452 (783)
Q Consensus 379 ~~~~~~~~~~~~p~~~~c~~~~~~~~~~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~------~ 452 (783)
++++|++++|+.|++.-- ..+-+..+|+.-.+. +
T Consensus 353 vt~iTaiIs~~np~~r~~----------------------------------------~~e~i~~Lf~~C~~~~s~~l~~ 392 (696)
T KOG0475|consen 353 VTLVTAIISLFNPETRFN----------------------------------------MSELITILFNKCSPSSSTSLPE 392 (696)
T ss_pred HHHHHHHHHhcCHHHHhh----------------------------------------HHHHHHHHHhhcCCcccccCcc
Confidence 999999999999987200 000111122110000 0
Q ss_pred ----CchhHHHHHHHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHHhhcc-----------CCcchHHHHHHHhh
Q 003966 453 ----FQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY-----------TNIDQGLYAVLGAA 517 (783)
Q Consensus 453 ----~~~~~l~~~~~~k~~lt~~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~~-----------~~~~~~~~alvGaa 517 (783)
-....|+..+++|+++|++|+|+++|+|+|+||+.+||+.||++|.+..+. ..+.||.||++|||
T Consensus 393 ~~~~~~~~~L~~a~i~k~~~t~ftfGakvP~GifvPSmaiGA~aGr~vG~~~e~l~~~~~~~~fg~~ci~Pg~Ya~vGaA 472 (696)
T KOG0475|consen 393 TTVYSAAILLLLALILKIALTIFTFGAKVPAGIFVPSLAIGAIAGRAVGIIVEQLAQNPDFNLFGLSCATPGAYALVGAA 472 (696)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhccCccceecchHHHHHHHHHHHHHHHHHHhcCCCccccchhhcCchHHHHHHHH
Confidence 113456777889999999999999999999999999999999999765441 34789999999999
Q ss_pred hhhhhhhchhHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhc-CccHHHHHHHhcCCCCCCCCCCCcccccccccccc
Q 003966 518 SLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYEIILELKGLPFLDAHPEPWMRTLTVGELID 596 (783)
Q Consensus 518 a~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~-~~~iy~~~l~~kg~p~l~~~~~~~l~~l~v~dvM~ 596 (783)
|.|+|++|+|+|++|||+|+||++.+++|+|+|+++|+||++.+ ..++||++++++|+||++.+.+.. +.-..++|.
T Consensus 473 A~LsGvtrltvtlVVImFELTG~l~~IlPlm~av~~SkwI~d~~gk~gIyda~I~~ng~P~l~~k~e~~--~t~~~~v~~ 550 (696)
T KOG0475|consen 473 ATLSGVTRLTVTLVVIMFELTGALNYILPLMLAVMISKWIGDGLGKTGIYDAHIELNGYPFLDSKSEFS--STLAIPVME 550 (696)
T ss_pred HHhcCcceeeEEEEEEeeeccCcceeHHHHHHHHHHHHHHHhccccchHHHHHHHhcCCCCcccccccc--cchhhhhhc
Confidence 99999999999999999999999999999999999999999999 778999999999999997765544 334445554
Q ss_pred c---CCCeeEEcCc-ccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhch-hhhhhccch
Q 003966 597 A---KPPVITLSGI-EKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKW-FLQEKRRTE 671 (783)
Q Consensus 597 ~---~~~vv~l~~~-~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~-f~~~~~~~~ 671 (783)
+ .++..++..+ +++++...+++++++++|||+-++ ++.+++|+|+|+|+...+.+.. ..+...
T Consensus 551 p~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~---------~sq~lvGfv~rr~l~~~i~~ar~~q~~~~--- 618 (696)
T KOG0475|consen 551 PCRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSE---------DSQRLVGFVLRRNLFLAILNARKIQSFIV--- 618 (696)
T ss_pred hhcCchhheeccccceeHHHHHHHHhhcccCCceEEEcc---------ccceeEEEEchHHHHHHHhhhccccccce---
Confidence 4 2235566655 999999999999999999998664 4579999999999987665321 111000
Q ss_pred hHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCC
Q 003966 672 EWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVS 751 (783)
Q Consensus 672 ~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~ 751 (783)
. +...+.++ ......+.+...|++++||.+|++|.+++|.+.+.++|++.|+|+..|.+ +|
T Consensus 619 ----~---~~~~f~~~------~~~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~------~G 679 (696)
T KOG0475|consen 619 ----T---TSIYFNDP------SPSAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK------NG 679 (696)
T ss_pred ----e---cccccCCC------CccccCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc------CC
Confidence 0 00011111 01111223356899999999999999999999999999999999999886 68
Q ss_pred cEEEEEehhhchhhH
Q 003966 752 PVVGILTRQDLRAFN 766 (783)
Q Consensus 752 ~vvGIITr~DLl~~~ 766 (783)
++.|+||++|+++..
T Consensus 680 ~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 680 ILLGIITKKDCLRHT 694 (696)
T ss_pred eeEeeeehHHHHHhh
Confidence 999999999998753
No 3
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-85 Score=724.77 Aligned_cols=638 Identities=27% Similarity=0.474 Sum_probs=498.3
Q ss_pred HhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Q 003966 71 HDWRSRSKVQVLQYIFLKWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAV 150 (783)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~w~~~~liGv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 150 (783)
++|..|....+++.....|++.+++|++++++++.+|++++.+++...+... .+.+......|+.|+..++++.++++.
T Consensus 78 ~~~~~r~~q~i~r~l~eDW~flalLG~imAlvS~~mD~ai~~~~~a~~~ly~-~~~~~~~yl~yl~Wv~y~v~Li~fSA~ 156 (931)
T KOG0476|consen 78 QEFLTRQMQNIVRKLGEDWFFLALLGVIMALVSIGMDMAIESLQHAQVWLYR-ELGSSHSYLAYLSWVGYPVGLVLFSAG 156 (931)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666677778899999999999999999999999999887765544 344444556788899999999999999
Q ss_pred HHHHhccCCCCCCHHHHHHHHhCCCCCCcchhHHHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHhhcCCCCcccch
Q 003966 151 LCVCFAPTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIK 230 (783)
Q Consensus 151 l~~~~~p~a~GsGipev~~~lng~~~~~~l~~~tl~~K~~~~~~sv~sG~s~G~EGP~vhiGa~igs~l~~~~s~~~~l~ 230 (783)
+|++++|+|-||||||||.+|.|+...++++.||+++|++|..+++|||+++|||||+||+++.+++.+++.. .
T Consensus 157 f~h~iapQAvGSGIPEmKtIlrGv~LkeYLt~KtlvAKviGLT~tLGsGlpiGKeGPFVHiasivA~~l~k~~------a 230 (931)
T KOG0476|consen 157 FCHYIAPQAVGSGIPEMKTILRGVILKEYLTLKTLVAKVIGLTLTLGSGLPIGKEGPFVHIASIVAALLSKVT------A 230 (931)
T ss_pred HHheeccccccCCChhHHHHHHhhhHHhhhhHHHHHHHHHHhhhhhccCCCcCCCCCchhHHHHHHHHHHHHH------H
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998732 2
Q ss_pred hhhhhccCCcchhhhHHHhhhhhhhhhhccCcccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 003966 231 WQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGL 310 (783)
Q Consensus 231 ~~~~~~f~~~~~~r~lv~~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~~~~~~~~~~~~~ 310 (783)
+.+-.+|.|+....+++++|||.|||+.|+||+|||||++|++++||..+++||.||+++++|+++|.+..|.......
T Consensus 231 ~~~~g~~enesR~~EmLaaaCAVGVactFsAPiGgVLfSIEvTS~yFAVrnYWRGFFAAtcsA~vFR~lavf~v~~~~t- 309 (931)
T KOG0476|consen 231 CQFGGFFENESRNMEMLAAACAVGVACTFSAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCSAFVFRLLAVFFVEAEVT- 309 (931)
T ss_pred hhccccccCcchHHHHHHHHhhhhheeeecCccceeEEEEEEeeeeeeHHHHHHHHHHHHhHHHHHHHHHHHcccchhh-
Confidence 2344677888888899999999999999999999999999999999999999999999999999999987775421110
Q ss_pred cCCCcceeeeecC-CcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhchhhhHHHHHHHHHHHHhh
Q 003966 311 FGTGGLIMFDVSN-VPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYN---LINQKGKMHKLLLALSVSVFTSVC 386 (783)
Q Consensus 311 fg~~~~~~f~~~~-~~~~~~~~~l~~~i~lGv~~Gllg~~f~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 386 (783)
-...|+.++ .+.++.+.|+|+|+++|++||++|++|+++.+++.-+.+ ..+.-...++++.+++++++.+.+
T Consensus 310 ----ItA~yqT~F~~d~~F~~~ELp~FallGl~cGllGa~fVylhR~ivlf~Rkn~~~~~~f~k~~llyp~~~a~v~ssl 385 (931)
T KOG0476|consen 310 ----ITALYQTSFRPDFPFDVQELPFFALLGLLCGLLGALFVYLHRRIVLFLRKNRYAKKLFQKSRLLYPAFIALVFSSL 385 (931)
T ss_pred ----hHHHHhccCCCCCCCCHHHhHHHHHHHHHHhcccceeeeeeeeeeeeehhhHHHHHHHhhCccHHHHHHHHHHhhe
Confidence 011233332 234789999999999999999999999999887644332 112222345788888989888887
Q ss_pred hhccc-----------------cccccCCC-CCCCCCCCCCCCCCCCcccccCCCCCchhhHHHhhcCcHHHHHHhhcCC
Q 003966 387 QYCLP-----------------FLADCKAC-DPSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSN 448 (783)
Q Consensus 387 ~~~~p-----------------~~~~c~~~-~~~~~~~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~ 448 (783)
.|..- ++.+|+.. +....+. ||++.+. ...+ .
T Consensus 386 tfP~GlG~f~aG~l~f~etl~~fF~Nctw~~~~~~~~~--------------~~~~~~~---------------hW~~-p 435 (931)
T KOG0476|consen 386 TFPPGLGQFLAGRLSFRETLVDFFDNCTWWVQTNDSEL--------------CPAHILT---------------HWYH-P 435 (931)
T ss_pred ecCCcccccccccccHHhHHHHHhhcCeeeecCCCcCC--------------CChhhhh---------------hhcC-C
Confidence 76321 01223211 1011112 2222111 0011 0
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHHhhc-----------cCCcchHHHHHHHhh
Q 003966 449 TPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGS-----------YTNIDQGLYAVLGAA 517 (783)
Q Consensus 449 ~~~~~~~~~l~~~~~~k~~lt~~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~-----------~~~~~~~~~alvGaa 517 (783)
...-..+.+|++|++.||++++++..+.+|+|.|+|.+.+||++||++|+.+.. ...+.||.||++|||
T Consensus 436 ~g~~~~f~tL~lf~l~~F~~siia~TipvPsG~FmPvFViGAafGRlvGE~m~~lfP~Gi~~~gi~~~I~PG~YAVVGAA 515 (931)
T KOG0476|consen 436 EGDVSIFGTLVLFFLMYFWMSIIATTIPVPSGVFMPVFVIGAAFGRLVGEIMAVLFPEGIRGGGITPPIHPGGYAVVGAA 515 (931)
T ss_pred CCceeeHHHHHHHHHHHHHHHHHHhccccCccceeeeeeechhhhhhhhhhheeecccccccCCccCccccchhhhhhhh
Confidence 012233567899999999999999999999999999999999999999987643 135789999999999
Q ss_pred hhhhhhhchhHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhcCccHHHHHHHhcCCCCCCCCCCCc--cccccccccc
Q 003966 518 SLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPW--MRTLTVGELI 595 (783)
Q Consensus 518 a~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~~~~iy~~~l~~kg~p~l~~~~~~~--l~~l~v~dvM 595 (783)
||-|+++ .|+|..||++|+||++..++|+|+|+++|++|+..+.+|+||.+++.|++|||+..++.. ...+.|+|+|
T Consensus 516 AfsGaVT-HTvSvAVIifElTGQl~hiLPVmIAVllaNAVa~~LQPSiYDSII~IKklPYLPDlpps~~~~h~v~VE~iM 594 (931)
T KOG0476|consen 516 AFSGAVT-HTVSVAVIIFELTGQLCHILPVMIAVLLANAVAASLQPSIYDSIIRIKKLPYLPDLPPSRSSVHTVKVEHIM 594 (931)
T ss_pred hhcccee-eeeeEEEEEEeeccchHHHHHHHHHHHHHHHHHHHhCcchhhheeeeccCCcCCCCCCcccceeEEEeeeec
Confidence 9865555 699999999999999999999999999999999999999999999999999999877654 5688999999
Q ss_pred ccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhh------hhc-
Q 003966 596 DAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ------EKR- 668 (783)
Q Consensus 596 ~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~------~~~- 668 (783)
.+ |+..+..+.+.+|+.++++.++...||+||+. ++..|+|.|.|++|..+|+++.-.+ +++
T Consensus 595 V~--dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~---------esmiLlGSV~R~~L~~ll~~~ig~~~r~~~a~~r~ 663 (931)
T KOG0476|consen 595 VT--DVKYITKDTTYRELREALQTTTLRSFPLVESK---------ESMILLGSVARRYLTALLQRHIGPEPRLVEAQKRV 663 (931)
T ss_pred cc--cceeeeccCcHHHHHHHHHhCccceeccccCc---------ccceeeehhHHHHHHHHHHhhcCccHhHHHHHHHh
Confidence 99 99999999999999999999889999999984 6789999999999999998632110 000
Q ss_pred cch------------hHHHh-----------------------------------------hhhhhHHHh----------
Q 003966 669 RTE------------EWEVR-----------------------------------------EKFSWVELA---------- 685 (783)
Q Consensus 669 ~~~------------~~~~~-----------------------------------------~~~~~~d~~---------- 685 (783)
+.. .++.. +.++.++..
T Consensus 664 r~~~E~~~~~~~~~~~ee~~~r~p~~~~~~~~~~e~s~~~~~~~et~kp~~p~~~~~p~~~~~lt~~~~sG~~~~~~~s~ 743 (931)
T KOG0476|consen 664 RTASEIFLTIFERSKKEEPPRRSPSRSEFFTMQRENSDIVTALGETAKPLPPSEQRLPSVVENLTPRTISGTRENALLSL 743 (931)
T ss_pred hhhhhchhhhhhhhhccCCCCCCccccccccccccccccccccccccCCCCchhccCccccccccccccCCccccccccc
Confidence 000 00000 000000000
Q ss_pred ----hhcC-------C-----------------cc--ccccChh--------hhhhccCcccc-ccCCCeeecCCCCHHH
Q 003966 686 ----EREG-------K-----------------IE--EVAVTSE--------EMEMYIDLHPL-TNTTPYTVIESMSVAK 726 (783)
Q Consensus 686 ----~~~~-------~-----------------i~--di~~~~~--------~~~~~~dl~~i-m~~~p~tV~~~~sL~~ 726 (783)
.... + -+ +.+...+ ..++.+|+++. +|+.|+...+.+||.|
T Consensus 744 ~~~~~~~~~p~~~~~~l~~~~~r~~~~~~~~~~~~~~~~d~~~eei~~we~~~l~~~ld~~~~~IDpaPfQLve~TSL~K 823 (931)
T KOG0476|consen 744 RDMESPLHGPAAEHHPLHKLLTRQTKVNNKKQSHDDNEYDLSAEEIKEWEEEQLSQKLDLDECAIDPAPFQLVEGTSLYK 823 (931)
T ss_pred cccccCCCCCcccccccccccccccccccccccccccccccChhhhhHHHHHHhccccchhhCCCCCCceeeeccchHHH
Confidence 0000 0 00 0111222 23455667665 6899999999999999
Q ss_pred HHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHhh
Q 003966 727 AMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 768 (783)
Q Consensus 727 a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~~ 768 (783)
++.+|.-+|++|..|.+ .||++|+|+.++|.++.-.
T Consensus 824 ~HtLFSLLgL~~AYVT~------~GrLvGVValkELRkAie~ 859 (931)
T KOG0476|consen 824 VHTLFSLLGLNHAYVTS------CGRLVGVVALKELRKAIEN 859 (931)
T ss_pred HHHHHHHhccchhhhcc------cCcEEEEEEHHHHHHHHHh
Confidence 99999999999999998 5899999999999887654
No 4
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=100.00 E-value=1.3e-79 Score=695.76 Aligned_cols=459 Identities=60% Similarity=1.057 Sum_probs=407.8
Q ss_pred CCCCcccccchhhhHhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH
Q 003966 57 ESLDYEINENDLFKHDWRSRSKVQVLQYIFLKWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLY 136 (783)
Q Consensus 57 esldy~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~liGv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (783)
||+||++.||+.+|.|||+|++++..+|.+.||++++++|+++|+++.+++..+++++++++....+...+..++..|+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~ilvGi~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (466)
T cd03685 1 ESLDYEVIENDLFREEWRKRKKKQVLQYEFLKWIICLLIGIFTGLVAYFIDLAVENLAGLKFLVVKNYIEKGRLFTAFLV 80 (466)
T ss_pred CCCCccccccHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999988776555545555566777
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhCCCCCCcchhHHHHHHHHHHHHHhhccCCCCCcchHHHHHHHHH
Q 003966 137 FTGVNFLLTLVAAVLCVCFAPTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 216 (783)
Q Consensus 137 ~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~~lng~~~~~~l~~~tl~~K~~~~~~sv~sG~s~G~EGP~vhiGa~ig 216 (783)
|+.+++++++++++++.+++|++.||||||+|+++||.+.++.+++|+++.|++++++++++|+|+|||||++|+||++|
T Consensus 81 ~~~~~~~~~li~~~l~~~~~p~a~GsGip~v~~~l~g~~~~~~l~~r~~~~K~i~~~l~vgsG~s~GrEGP~v~iGa~ig 160 (466)
T cd03685 81 YLGLNLVLVLVAALLVAYIAPTAAGSGIPEVKGYLNGVKIPHILRLKTLLVKIVGVILSVSGGLALGKEGPMIHIGACIA 160 (466)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHcCcCccccchHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHH
Confidence 88899999999999999999999999999999999998888889999999999999999999999999999999999999
Q ss_pred HHhhcCCCCcccchhhhhhccCCcchhhhHHHhhhhhhhhhhccCcccceeeeeeecchhhhhhhHHHHHHHHHHHHHHH
Q 003966 217 SLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVL 296 (783)
Q Consensus 217 s~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv~~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~ 296 (783)
++++|..++.++++++|++++++++|||++++||+|||+||+||||+||++|++||+.++|+.+..|+.++++++++++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~li~~GaAAGlaaaF~APl~G~lFa~E~l~~~~~~~~~~~~l~~s~ias~va 240 (466)
T cd03685 161 AGLSQGGSTSLRLDFRWFRYFRNDRDKRDFVTCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQALTWRTFFSSMIVTFTL 240 (466)
T ss_pred HHHhhccccccccchhhhhhccCHHHHHHHHHHHhhcchhhccCCCcceeeeeeehhhhhcchhHHHHHHHHHHHHHHHH
Confidence 99999776677777889998889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCccccCCCcceeeeecCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHH
Q 003966 297 RAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLA 376 (783)
Q Consensus 297 ~~~~~~~~~~~~~~fg~~~~~~f~~~~~~~~~~~~~l~~~i~lGv~~Gllg~~f~~l~~~~~~~~~~~~~~~~~~~~~~~ 376 (783)
+.+..+...+....|+++..+.|++.....++++.|+++++++|++||++|.+|+++++++.+++++.+.+.++.|++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~l~~ 320 (466)
T cd03685 241 NFFLSGCNSGKCGLFGPGGLIMFDGSSTKYLYTYFELIPFMLIGVIGGLLGALFNHLNHKVTRFRKRINHKGKLLKVLEA 320 (466)
T ss_pred HHHHHHcCCCCccccCCccceecccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHH
Confidence 88766544333345654454556554334568889999999999999999999999999999888776543455678888
Q ss_pred HHHHHHHHhhhhccccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCchhhHHHhhcCcHHHHHHhhcCCCCCCCchh
Q 003966 377 LSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPS 456 (783)
Q Consensus 377 ~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~ 456 (783)
++++++++++.+ ..
T Consensus 321 ~lv~~~~~~~~~------------------------------------------------------------------~~ 334 (466)
T cd03685 321 LLVSLVTSVVAF------------------------------------------------------------------PQ 334 (466)
T ss_pred HHHHHHHHHHHH------------------------------------------------------------------HH
Confidence 887777665321 12
Q ss_pred HHHHHHHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHHhhcc---CCcchHHHHHHHhhhhhhhhhchhHHHHHH
Q 003966 457 SILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY---TNIDQGLYAVLGAASLMAGSMRMTVSLCVI 533 (783)
Q Consensus 457 ~l~~~~~~k~~lt~~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~~---~~~~~~~~alvGaaa~l~g~~r~pis~~vi 533 (783)
.+++++++|+++|++|+|+|+|||+|+|++++||++|+++|.++... ...+|+.||++||||+++|++|+|+|+++|
T Consensus 335 ~l~~~~~~k~l~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~~~~~~~~~~~aliGmaa~lag~~raPlt~ivi 414 (466)
T cd03685 335 TLLIFFVLYYFLACWTFGIAVPSGLFIPMILIGAAYGRLVGILLGSYFGFTSIDPGLYALLGAAAFLGGVMRMTVSLTVI 414 (466)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHHccccCCCchHHHHHHHHHHHhHHhhhhHHHHHH
Confidence 35566778999999999999999999999999999999999987653 467899999999999999999999999999
Q ss_pred HHHHhCCchhHHHHHHHHHHHHHHHhhcCccHHHHHHHhcCCCCCCCC
Q 003966 534 FLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAH 581 (783)
Q Consensus 534 ~~ElTg~~~~l~pimia~~ia~~v~~~~~~~iy~~~l~~kg~p~l~~~ 581 (783)
++|+||++++++|+|+++++|+++++.+++++||.+++.||+||+++.
T Consensus 415 v~ElTg~~~~l~pl~ia~~iA~~va~~~~~siY~~~l~~~g~p~l~~~ 462 (466)
T cd03685 415 LLELTNNLTYLPPIMLVLMIAKWVGDYFNEGIYDIIIQLKGVPFLHNG 462 (466)
T ss_pred hhhhcCChhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCC
Confidence 999999999999999999999999999999999999999999999764
No 5
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=1.7e-75 Score=683.15 Aligned_cols=542 Identities=18% Similarity=0.255 Sum_probs=441.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHH-HH
Q 003966 90 SLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPE-IK 168 (783)
Q Consensus 90 ~~~~liGv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipe-v~ 168 (783)
++++++|+++|+++.+|+..+++++++++....+....... .+|++.+.++++++++++++..+..+..+++|+++ ++
T Consensus 26 ~~~~~vG~~~Gl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ggli~~~~~~~~~~~~~~~g~~~~~~ 104 (574)
T PRK01862 26 IWSAIVGIGGAFATTAFREGIELIQHLISGHSGSFVEMAKS-LPWYVRVWLPAAGGFLAGCVLLLANRGARKGGKTDYME 104 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHhhc-ccHHHHHHHHHHHHHHHHHHHHHhccccccCCcHHHHH
Confidence 47899999999999999999999999988632221111111 12333455667777777877777777666555555 66
Q ss_pred HHHhCCCCCCcchhHHHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHhhcCCCCcccchhhhhhccCCcchhhhHHH
Q 003966 169 AYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLIT 248 (783)
Q Consensus 169 ~~lng~~~~~~l~~~tl~~K~~~~~~sv~sG~s~G~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv~ 248 (783)
++.++ .+.+++++.+.|++++++++++|+|+|||||++|+||++|+++++ |++. +++++|.+++
T Consensus 105 ~~~~~---~~~~~~~~~~~k~~~~~l~i~~G~s~G~EgP~v~~ga~~~~~~~~-----------~~~~--~~~~~r~l~~ 168 (574)
T PRK01862 105 AVALG---DGVVPVRQSLWRSASSLLTIGSGGSIGREGPMVQLAALAASLVGR-----------FAHF--DPPRLRLLVA 168 (574)
T ss_pred HHHcC---CCCCChHHHHHHHHHHHHHHHcCCCcCCcchHHHHHHHHHHHHHH-----------HhCC--CHHHHHHHHH
Confidence 66665 456789999999999999999999999999999999999999997 5554 5678899999
Q ss_pred hhhhhhhhhhccCcccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCcceeeeecCCcccc
Q 003966 249 CGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRY 328 (783)
Q Consensus 249 ~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~~~~~~~~~~~~~fg~~~~~~f~~~~~~~~~ 328 (783)
||+|||+||+||||++|++|++|++...|+.+.++++++++.+++++.+.+ ++.++ .|+++. ...+
T Consensus 169 ~G~aAglaa~F~aPl~g~lFa~E~~~~~~~~~~~~~~~~as~~a~~v~~~~-----------~g~~~--~~~~~~-~~~~ 234 (574)
T PRK01862 169 CGAAAGITSAYNAPIAGAFFVAEIVLGSIAMESFGPLVVASVVANIVMREF-----------AGYQP--PYEMPV-FPAV 234 (574)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH-----------cCCCc--eeeCCC-cCcC
Confidence 999999999999999999999999998999999999999999998888754 23343 456553 4567
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHhhhhccccccccCCCCCCCCCCCC
Q 003966 329 HVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCP 408 (783)
Q Consensus 329 ~~~~l~~~i~lGv~~Gllg~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~p 408 (783)
+..++++++++|++||++|.+|+++..++.+++++++ ..+.+...+.+++++++.++.|.+
T Consensus 235 ~~~~~~~~~~lGv~~G~~~~~f~~~~~~~~~~~~~~~----~~~~~~~~~~gl~~g~l~~~~p~~--------------- 295 (574)
T PRK01862 235 TGWEVLLFVALGVLCGAAAPQFLRLLDASKNQFKRLP----VPLPVRLALGGLLVGVISVWVPEV--------------- 295 (574)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----CchhHHHHHHHHHHHHHHHHHHHH---------------
Confidence 8899999999999999999999999998887765543 223345566777888888887876
Q ss_pred CCCCCCCcccccCCCCCchhhHHHhhcCcHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHhhcCccccccchHHHHH
Q 003966 409 TNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILM 488 (783)
Q Consensus 409 ~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~l~~~~~~k~~lt~~t~g~g~~gG~f~P~l~i 488 (783)
.|. .|+ .++.+++. ...+..++.++++|+++|++|+|+|+|||+|+|++++
T Consensus 296 -~g~------------G~~------------~i~~~~~~----~~~~~~l~~~~~~K~~~t~~t~g~G~~GG~f~P~l~i 346 (574)
T PRK01862 296 -WGN------------GYS------------VVNTILHA----PWTWQALVAVLVAKLIATAATAGSGAVGGVFTPTLFV 346 (574)
T ss_pred -hcC------------CHH------------HHHHHHcC----CchHHHHHHHHHHHHHHHHHHHccCCCccchhhHHHH
Confidence 121 233 33444432 3455667778889999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccC---CcchHHHHHHHhhhhhhhhhchhHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhc-Ccc
Q 003966 489 GSAYGRLLGMAMGSYT---NIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPS 564 (783)
Q Consensus 489 Ga~~G~l~g~~~~~~~---~~~~~~~alvGaaa~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~-~~~ 564 (783)
||++|+++|++++... ..+|+.|+++||||+++|++|+|++++++++|+|+++++++|+|+++++|+++++.+ +++
T Consensus 347 Ga~~G~~~g~~~~~~~~~~~~~~~~~a~vGmaa~~aa~~~aPlt~i~l~~Elt~~~~~~~P~~ia~~~a~~v~~~~~~~~ 426 (574)
T PRK01862 347 GAVVGSLFGLAMHALWPGHTSAPFAYAMVGMGAFLAGATQAPLMAILMIFEMTLSYQVVLPLMVSCVVAYFTARALGTTS 426 (574)
T ss_pred HHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999886522 245788999999999999999999999999999999999999999999999999988 789
Q ss_pred HHHHHHHhcCCCCCCCCCCCcccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCe
Q 003966 565 IYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATE 644 (783)
Q Consensus 565 iy~~~l~~kg~p~l~~~~~~~l~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~ 644 (783)
+|+.+++.++. +.+.+.+++++++|+|++ +..+++++++++|+.+.+++++++.+||+|++ ++
T Consensus 427 iy~~~~~~~~~----~~~~~~L~~~~V~dim~~--~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~-----------g~ 489 (574)
T PRK01862 427 MYEITLRRHQD----EAERERLRTTQMRELIQP--AQTVVPPTASVADMTRVFLEYPVKYLYVVDDD-----------GR 489 (574)
T ss_pred hHHHHHHhccc----cchhhHHhhCcHHHHhcC--CCceeCCCCCHHHHHHHHHhCCCceEEEEcCC-----------Ce
Confidence 99999998864 335567899999999998 88899999999999999999999999999986 89
Q ss_pred EEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCH
Q 003966 645 LHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSV 724 (783)
Q Consensus 645 l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL 724 (783)
++|+|+++|+.+.+.++.. +...++.++|++++.++++|+++
T Consensus 490 lvGiVt~~dL~~~l~~~~~--------------------------------------~~~~~v~dim~~~~~~v~~d~~L 531 (574)
T PRK01862 490 FRGAVALKDITSDLLDKRD--------------------------------------TTDKTAADYAHTPFPLLTPDMPL 531 (574)
T ss_pred EEEEEEHHHHHHHhhcccc--------------------------------------cccchHHHhccCCCeeECCCCCH
Confidence 9999999999764422110 00123567788889999999999
Q ss_pred HHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHhh
Q 003966 725 AKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 768 (783)
Q Consensus 725 ~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~~ 768 (783)
.++.++|.+.+.+++||+|+ +++++++|+||++|+++++.+
T Consensus 532 ~~al~~m~~~~~~~lpVVd~---~~~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 532 GDALEHFMAFQGERLPVVES---EASPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred HHHHHHHHhcCCCeeeeEeC---CCCCeEEEEEEHHHHHHHHHh
Confidence 99999999999999999987 222589999999999997654
No 6
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=100.00 E-value=5.1e-70 Score=614.72 Aligned_cols=409 Identities=36% Similarity=0.649 Sum_probs=350.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhCCC
Q 003966 96 GLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEIKAYLNGVD 175 (783)
Q Consensus 96 Gv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~~lng~~ 175 (783)
|+++|+++..++..++|+.+++.... +|+.|+++++++++++++++.+++|.++||||||||+++||.+
T Consensus 1 g~~~g~~~~~i~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~i~~~l~~~~~p~a~GsGIp~v~~~l~g~~ 69 (445)
T cd03684 1 GIAIGLIAGLIDIIASWLSDLKEGYC-----------NYIIYVLLALLFAFIAVLLVKVVAPYAAGSGIPEIKTILSGFI 69 (445)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHHHHHHHHHhcCccccCCCHHHHHHHHcCcc
Confidence 78999999999999999998876542 4667788899999999999999999999999999999999988
Q ss_pred CCCcchhHHHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHhhcCCCCcccchhhhhhcc-CCcchhhhHHHhhhhhh
Q 003966 176 TPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYF-NNDRDRRDLITCGSSSG 254 (783)
Q Consensus 176 ~~~~l~~~tl~~K~~~~~~sv~sG~s~G~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f-~~~~~~r~lv~~GaAAG 254 (783)
.++.+++|+++.|++++++++++|+|+|||||++|+||++|++++| |++.+ .|++|||++++||+|||
T Consensus 70 ~~~~~~~~~~~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ia~~l~~-----------~~~~~~~~~~~~r~li~~GaaAG 138 (445)
T cd03684 70 IRGFLGKWTLLIKSVGLVLAVASGLSLGKEGPLVHIATCVGNIISR-----------LFPKYRRNEAKRREILSAAAAAG 138 (445)
T ss_pred ccccccHHHHHHHHHhhHHhhccCCcCCCCCCcchHHHHHHHHHHH-----------HHHHhccCHHHHHHHHHHHHhhh
Confidence 8899999999999999999999999999999999999999999986 55443 37899999999999999
Q ss_pred hhhhccCcccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCcceeeeecCCcccccchhhh
Q 003966 255 VCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDII 334 (783)
Q Consensus 255 vaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~~~~~~~~~~~~~fg~~~~~~f~~~~~~~~~~~~~l~ 334 (783)
+||+||||+||++|++||+.++|+.+.+|++++++++++++.+.+. .++.++...|.++. ..+++..|++
T Consensus 139 laAaF~APi~G~lFalE~l~~~~~~~~l~~~~~as~~a~~v~~~~~---------~~~~~~~~~f~~~~-~~~~~~~~l~ 208 (445)
T cd03684 139 VAVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALVAAFTLKSLN---------PFGTGRLVLFEVEY-DRDWHYFELI 208 (445)
T ss_pred hHHhcCCccchhhhhhHhhhhhccHHHHHHHHHHHHHHHHHHHHhc---------ccCCCCceEEeccC-CCCccHHHHH
Confidence 9999999999999999999999999999999999999999888652 23444444566542 3567889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHhhhhccccccccCCCCCCCCCCCCCCCCCC
Q 003966 335 PVTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSG 414 (783)
Q Consensus 335 ~~i~lGv~~Gllg~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~p~~g~~g 414 (783)
+++++|+++|++|.+|+++++++.+++++.+. +.++++++++++++++++.++.|+.. +.
T Consensus 209 ~~i~lGi~~Gl~g~lf~~~~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~~l~~~~p~~~----------------~~-- 268 (445)
T cd03684 209 PFILLGIFGGLYGAFFIKANIKWARFRKKSLL--KRYPVLEVLLVALITALISFPNPYTR----------------LD-- 268 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHhChHHHc----------------cc--
Confidence 99999999999999999999999988876541 23467788899999999999888861 10
Q ss_pred CcccccCCCCCchhhHHHhhcCcHHHHHHhhcCC----------------CCCC-CchhHHHHHHHHHHHHHHHhhcCcc
Q 003966 415 NFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSN----------------TPTE-FQPSSILIFFILYCILGLITFGIAV 477 (783)
Q Consensus 415 ~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~----------------~~~~-~~~~~l~~~~~~k~~lt~~t~g~g~ 477 (783)
.+ +.++.+|... .+.. .....+++++++|+++|++|+|+|+
T Consensus 269 ----------g~------------~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~K~~~t~lt~gsG~ 326 (445)
T cd03684 269 ----------MT------------ELLELLFNECEPGDDNSLCCYRDPPAGDGVYKALWSLLLALIIKLLLTIFTFGIKV 326 (445)
T ss_pred ----------hh------------hHHHHHHhcCCCcccccccccccccCCccchhHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 01 1111111100 0111 1345677788999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHHHhhcc-----------------CCcchHHHHHHHhhhhhhhhhchhHHHHHHHHHHhCC
Q 003966 478 PSGLFLPIILMGSAYGRLLGMAMGSY-----------------TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNN 540 (783)
Q Consensus 478 ~gG~f~P~l~iGa~~G~l~g~~~~~~-----------------~~~~~~~~alvGaaa~l~g~~r~pis~~vi~~ElTg~ 540 (783)
|||+|+|++++||++|+++|.+++.. .+.+|+.||++||||+++|++|+|+|+++|++|+||+
T Consensus 327 ~GG~f~P~l~iGA~~G~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~alvGmaa~~a~~~raPlt~ivlv~ElTg~ 406 (445)
T cd03684 327 PAGIFVPSMAVGALFGRIVGILVEQLAYSYPDSIFFACCTAGPSCITPGLYAMVGAAAFLGGVTRMTVSLVVIMFELTGA 406 (445)
T ss_pred CcceeHHHHHHHHHHhHHHHHHHHHHHhhCCcccccccccCCCCccCchHHHHHHHHHHhcchhccchhhhheeeeccCC
Confidence 99999999999999999999998642 2468899999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHhhc-CccHHHHHHHhcCCCCC
Q 003966 541 LLLLPITMIVLLIAKTVGDSF-NPSIYEIILELKGLPFL 578 (783)
Q Consensus 541 ~~~l~pimia~~ia~~v~~~~-~~~iy~~~l~~kg~p~l 578 (783)
+++++|+|+++++|+++++.+ .+++||.++++||+|||
T Consensus 407 ~~~l~pl~ia~~iA~~vs~~~~~~siY~~~l~~~g~p~l 445 (445)
T cd03684 407 LNYILPLMIAVMVSKWVADAIGKEGIYDAHIHLNGYPFL 445 (445)
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCC
Confidence 999999999999999999999 58999999999999996
No 7
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=100.00 E-value=1.5e-67 Score=592.14 Aligned_cols=411 Identities=31% Similarity=0.576 Sum_probs=344.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHH
Q 003966 89 WSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEIK 168 (783)
Q Consensus 89 w~~~~liGv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~ 168 (783)
|++.+++|+++|+++.+++..++++++++...... . ++..+..|+.|+.+++++++++++++.+++|.++||||||||
T Consensus 2 w~~~~l~gv~~Gl~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~ 79 (426)
T cd03683 2 WLFLALLGILMALISIAMDFAVEKLLNARRWLYSL-L-TGNSLLQYLVWVAYPVALVLFSALFCKYISPQAVGSGIPEMK 79 (426)
T ss_pred eEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHH
Confidence 88899999999999999999999999888765432 2 233445678888889999999999999999999999999999
Q ss_pred HHHhCCCCCCcchhHHHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHhhcCCCCcccchhhhhhccCCcchhhhHHH
Q 003966 169 AYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLIT 248 (783)
Q Consensus 169 ~~lng~~~~~~l~~~tl~~K~~~~~~sv~sG~s~G~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv~ 248 (783)
++++|.+.++.+++|+++.|++++++++++|+|+|||||+||+||++|+.++|.. +.+ . ..++|+++||++++
T Consensus 80 ~~l~g~~~~~~l~~r~~~~k~i~~~l~i~sG~svGrEGP~v~iGa~i~~~~~~~~----~~~--~-~~~~~~~~rr~Li~ 152 (426)
T cd03683 80 TILRGVVLPEYLTFKTLVAKVIGLTCALGSGLPLGKEGPFVHISSIVAALLSKLT----TFF--S-GIYENESRRMEMLA 152 (426)
T ss_pred HHHcCCCccccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhc----ccc--c-ccccCHHHHHHHHH
Confidence 9999988899999999999999999999999999999999999999999999721 110 0 01357788999999
Q ss_pred hhhhhhhhhhccCcccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCcceeeeec-CCccc
Q 003966 249 CGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVS-NVPVR 327 (783)
Q Consensus 249 ~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~~~~~~~~~~~~~fg~~~~~~f~~~-~~~~~ 327 (783)
||+|||+||+||||+||++|++||+.++|+.+.+|+++++|.+++++.+.+.++..... ..+ . .|... .....
T Consensus 153 ~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~i~s~~a~~v~~~~~~~~~~~~-~~~---~--~~~~~~~~~~~ 226 (426)
T cd03683 153 AACAVGVACTFGAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCGAFTFRLLAVFFSDQE-TIT---A--LFKTTFFVDFP 226 (426)
T ss_pred hHhhhhhHHhcCCcceeeEEEeehhhhhccHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-ccc---c--cccccccCCCC
Confidence 99999999999999999999999999999999999999999999998887644321100 000 0 02111 11345
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hchhhhHHHHHHHHHHHHhhhhccccccccCCCCCCCC
Q 003966 328 YHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQ---KGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFP 404 (783)
Q Consensus 328 ~~~~~l~~~i~lGv~~Gllg~~f~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~ 404 (783)
++..++++++++|+++|++|.+|++++.++.+++++.+. ..+..+++++++++++++++.+ |
T Consensus 227 ~~~~~l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~--p------------- 291 (426)
T cd03683 227 FDVQELPIFALLGIICGLLGALFVFLHRKIVRFRRKNRLFSKFLKRSPLLYPAIVALLTAVLTF--P------------- 291 (426)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHH--H-------------
Confidence 778899999999999999999999999999888765432 1233567788888887765322 1
Q ss_pred CCCCCCCCCCCcccccCCCCCchhhHHHhhcCcHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHhhcCccccccchH
Q 003966 405 ETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLP 484 (783)
Q Consensus 405 ~~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~l~~~~~~k~~lt~~t~g~g~~gG~f~P 484 (783)
+..+++++++|+++|++|+|+|+|||+|+|
T Consensus 292 --------------------------------------------------~~~l~~~~~~K~~~t~~t~gsG~~GGif~P 321 (426)
T cd03683 292 --------------------------------------------------FLTLFLFIVVKFVLTALAITLPVPAGIFMP 321 (426)
T ss_pred --------------------------------------------------HHHHHHHHHHHHHHHHHHHhCCCChhhhHH
Confidence 124666788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccC----------CcchHHHHHHHhhhhhhhhhchhHHHHHHHHHHhCCchhHHHHHHHHHHH
Q 003966 485 IILMGSAYGRLLGMAMGSYT----------NIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIA 554 (783)
Q Consensus 485 ~l~iGa~~G~l~g~~~~~~~----------~~~~~~~alvGaaa~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~ia 554 (783)
++++||++|+++|.++.... ..+|+.||++||||+++|++|+|.+ ++|++|+||++++++|+|+++++|
T Consensus 322 sl~iGa~~G~~~g~~~~~~~p~~~~~~~~~~~~~~~~alvGmaa~~a~~~ra~~t-~vlv~E~Tg~~~~llpl~ia~~ia 400 (426)
T cd03683 322 VFVIGAALGRLVGEIMAVLFPEGIRGGISNPIGPGGYAVVGAAAFSGAVTHTVSV-AVIIFELTGQISHLLPVLIAVLIS 400 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcccccCCCCCcCchHHHHHHHHHHHHHHHhHHHH-HheeeeecCCcchHHHHHHHHHHH
Confidence 99999999999999886532 3689999999999999999998665 579999999999999999999999
Q ss_pred HHHHhhcCccHHHHHHHhcCCCCCCC
Q 003966 555 KTVGDSFNPSIYEIILELKGLPFLDA 580 (783)
Q Consensus 555 ~~v~~~~~~~iy~~~l~~kg~p~l~~ 580 (783)
+++++.+++++||.+++.||+|||++
T Consensus 401 ~~v~~~~~~~iY~~~l~~~~~p~l~~ 426 (426)
T cd03683 401 NAVAQFLQPSIYDSIIKIKKLPYLPD 426 (426)
T ss_pred HHHHHhhCCCHHHHHHHhCCCCCCCC
Confidence 99999998899999999999999973
No 8
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=100.00 E-value=3.7e-67 Score=587.74 Aligned_cols=403 Identities=37% Similarity=0.654 Sum_probs=342.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhCCC
Q 003966 96 GLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEIKAYLNGVD 175 (783)
Q Consensus 96 Gv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~~lng~~ 175 (783)
|+++|+++.+++..+++..+++.+...+. ++.++..|+.|+.+++++++++++++.++.|.++||||||+|+++||.+
T Consensus 1 ~~~~Glv~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~~l~g~~ 78 (416)
T cd01036 1 GLLMGLVAVVLDYAVESSLDAGQWLLRRI--PGSYLLGYLMWVLWSVVLVLISSGICLYFAPQAAGSGIPEVMAYLNGVH 78 (416)
T ss_pred CeeehHHHHHHHHHHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHcCCc
Confidence 67899999999999999999998876542 3345556777889999999999999999999999999999999999999
Q ss_pred CCCcchhHHHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHhhcCCCCcccchhhhhhccCCcchhhhHHHhhhhhhh
Q 003966 176 TPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGV 255 (783)
Q Consensus 176 ~~~~l~~~tl~~K~~~~~~sv~sG~s~G~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv~~GaAAGv 255 (783)
.++.+++|+++.|++++++++++|+|+|||||+||+||++|+++++..+..++...+++++++|++|||++++||+|||+
T Consensus 79 ~~~~l~~~~~~~K~i~~~l~igsG~svGrEGP~V~iGa~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~r~ll~aGaaAGl 158 (416)
T cd01036 79 LPMYLSIRTLIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQGRSRTLGCHVHLFQLFRNPRDRRDFLVAGAAAGV 158 (416)
T ss_pred ccccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccchhhhccCHHHHHHHHHHHhhcch
Confidence 99999999999999999999999999999999999999999999986543334444567777889999999999999999
Q ss_pred hhhccCcccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCC-cceeeeecCCcccccchhhh
Q 003966 256 CAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTG-GLIMFDVSNVPVRYHVMDII 334 (783)
Q Consensus 256 aaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~~~~~~~~~~~~~fg~~-~~~~f~~~~~~~~~~~~~l~ 334 (783)
||+||||++|++|++||+.++|+.+.+|++++++.+++++.+.+.++........+..+ ....++++ ...+++..|++
T Consensus 159 aAaF~APiaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ 237 (416)
T cd01036 159 ASAFGAPIGGLLFVLEEVSTFFPVRLAWRVFFAALVSAFVIQIYNSFNSGFELLDRSSAMFLSLTVFE-LHVPLNLYEFI 237 (416)
T ss_pred hhccCCcceeeeeeeHHhhccccHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccceeccccC-CCCCCCHHHHH
Confidence 99999999999999999999999999999999999999988876443211100000000 00112232 23567889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hchhhhHHHHHHHHHHHHhhhhccccccccCCCCCCCCCCCCCCCCC
Q 003966 335 PVTLIGIIGGILGGLYNHILHKVLRLYNLINQ-KGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRS 413 (783)
Q Consensus 335 ~~i~lGv~~Gllg~~f~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~p~~g~~ 413 (783)
+++++|++||++|.+|+++++++.+++++.+. +.++.+++++++++++++++.+
T Consensus 238 ~~illGv~~G~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------------------------- 292 (416)
T cd01036 238 PTVVIGVICGLLAALFVRLSIIFLRWRRRLLFRKTARYRVLEPVLFTLIYSTIHY------------------------- 292 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHH-------------------------
Confidence 99999999999999999999999998876532 2355678888888888876532
Q ss_pred CCcccccCCCCCchhhHHHhhcCcHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHhhcCccccccchHHHHHHHHHH
Q 003966 414 GNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYG 493 (783)
Q Consensus 414 g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~l~~~~~~k~~lt~~t~g~g~~gG~f~P~l~iGa~~G 493 (783)
+..++++++.|+++|++|+|+|+|||+|+|++++||++|
T Consensus 293 -----------------------------------------~~~l~~~~~~K~~~t~~t~~sg~pGG~f~Psl~iGA~~G 331 (416)
T cd01036 293 -----------------------------------------APTLLLFLLIYFWMSALAFGIAVPGGTFIPSLVIGAAIG 331 (416)
T ss_pred -----------------------------------------HHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHH
Confidence 124566778999999999999999999999999999999
Q ss_pred HHHHHHhhccC-----------CcchHHHHHHHhhhhhhhhhchhHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhcC
Q 003966 494 RLLGMAMGSYT-----------NIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFN 562 (783)
Q Consensus 494 ~l~g~~~~~~~-----------~~~~~~~alvGaaa~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~~ 562 (783)
+++|.++.... .++|+.||++||||+++|++|+|+|+++|++|+||++++++|+|+++++|+++++.++
T Consensus 332 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~alvGmaa~l~~~~r~Plt~~vi~~ElTg~~~~l~pl~ia~~ia~~v~~~~~ 411 (416)
T cd01036 332 RLVGLLVHRIAVAGIGAESATLWADPGVYALIGAAAFLGGTTRLTFSICVIMMELTGDLHHLLPLMVAILIAKAVADAFC 411 (416)
T ss_pred HHHHHHHHHHccccccccccCCccChHHHHHHHHHHHhhhhhcchHhhhhheeeccCChhhHHHHHHHHHHHHHHHHhhC
Confidence 99999886532 3789999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHH
Q 003966 563 PSIYE 567 (783)
Q Consensus 563 ~~iy~ 567 (783)
+++||
T Consensus 412 ~siY~ 416 (416)
T cd01036 412 ESLYH 416 (416)
T ss_pred CCCCC
Confidence 89996
No 9
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=100.00 E-value=2.1e-59 Score=524.75 Aligned_cols=398 Identities=30% Similarity=0.512 Sum_probs=336.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhCC
Q 003966 95 VGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEIKAYLNGV 174 (783)
Q Consensus 95 iGv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~~lng~ 174 (783)
+|+++|+++.+|+..+++++++++....... ..+..|+.++.++.+++++++++++++.|+++|+|+|++++.++|.
T Consensus 1 iGi~~G~~~~~f~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~l~~~~~p~~~g~G~~~v~~~l~~~ 77 (402)
T cd01031 1 IGLLAGLVAVLFRLGIDKLGNLRLSLYDFAA---NNPPLLLVLPLISAVLGLLAGWLVKKFAPEAKGSGIPQVEGVLAGL 77 (402)
T ss_pred CeehHhHHHHHHHHHHHHHHHHHHHHHHhcc---cccHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHHcCC
Confidence 5899999999999999999999887643221 2223445566777788888888988889999999999999999985
Q ss_pred CCCCcchhHHHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHhhcCCCCcccchhhhhhccCCcchhhhHHHhhhhhh
Q 003966 175 DTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSG 254 (783)
Q Consensus 175 ~~~~~l~~~tl~~K~~~~~~sv~sG~s~G~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv~~GaAAG 254 (783)
. +.+.+++++.|++++++++++|+|+|||||++|+|+++|+++++ +++. +++++|++++||+|||
T Consensus 78 ~--~~~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga~ig~~~~~-----------~~~~--~~~~~~~l~~~g~aag 142 (402)
T cd01031 78 L--PPNWWRVLPVKFVGGVLALGSGLSLGREGPSVQIGAAIGQGVSK-----------WFKT--SPEERRQLIAAGAAAG 142 (402)
T ss_pred C--CcccHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHH-----------HhcC--CHHHHHHHHHHHHHHh
Confidence 3 35678999999999999999999999999999999999999997 4443 5778999999999999
Q ss_pred hhhhccCcccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCcceeeeecCCcccccchhhh
Q 003966 255 VCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDII 334 (783)
Q Consensus 255 vaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~~~~~~~~~~~~~fg~~~~~~f~~~~~~~~~~~~~l~ 334 (783)
++++||||++|++|++|++.++|+.+.+++.++++.+++++.+.+ +++++ .|.++. ...++..|++
T Consensus 143 ~aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~a~~~a~~v~~~~-----------~~~~~--~~~~~~-~~~~~~~~l~ 208 (402)
T cd01031 143 LAAAFNAPLAGVLFVLEELRHSFSPLALLTALVASIAADFVSRLF-----------FGLGP--VLSIPP-LPALPLKSYW 208 (402)
T ss_pred HHHHhCCccHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH-----------cCCCc--eEecCC-CCCCCHHHHH
Confidence 999999999999999999999998889999999999998888753 34443 345542 3568889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHhhhhccccccccCCCCCCCCCCCCCCCCCC
Q 003966 335 PVTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSG 414 (783)
Q Consensus 335 ~~i~lGv~~Gllg~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~p~~g~~g 414 (783)
+++++|+++|++|.+|++++++..++++++++ .++.+.+.+.+++++++.++.|+. .|
T Consensus 209 ~~illGv~~G~~g~~f~~~~~~~~~~~~~~~~---~~~~~~~~l~gl~~~~~~~~~p~~----------------~g--- 266 (402)
T cd01031 209 LLLLLGIIAGLLGYLFNRSLLKSQDLYRKLKK---LPRELRVLLPGLLIGPLGLLLPEA----------------LG--- 266 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---CChhHHHHHHHHHHHHHHHHHHHH----------------hC---
Confidence 99999999999999999999998888776532 223445567778888888888876 12
Q ss_pred CcccccCCCCCchhhHHHhhcCcHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHhhcCccccccchHHHHHHHHHHH
Q 003966 415 NFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGR 494 (783)
Q Consensus 415 ~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~l~~~~~~k~~lt~~t~g~g~~gG~f~P~l~iGa~~G~ 494 (783)
++++.++.+++ +++++..++++++.|+++|++|+|+|+|||+|+|++++||++|+
T Consensus 267 ---------------------~G~~~i~~~~~----~~~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~ 321 (402)
T cd01031 267 ---------------------GGHGLILSLAG----GNFSISLLLLIFVLRFIFTMLSYGSGAPGGIFAPMLALGALLGL 321 (402)
T ss_pred ---------------------CHHHHHHHHHc----CCchHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 12233444443 34667778888999999999999999999999999999999999
Q ss_pred HHHHHhhcc---CCcchHHHHHHHhhhhhhhhhchhHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhc-CccHHHHHH
Q 003966 495 LLGMAMGSY---TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYEIIL 570 (783)
Q Consensus 495 l~g~~~~~~---~~~~~~~~alvGaaa~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~-~~~iy~~~l 570 (783)
++|++++.. ...+|+.||++||||++++++|+|++++++++|+||++++++|+|+++++|+++++.+ ++++||.++
T Consensus 322 ~~g~~~~~~~~~~~~~~~~~a~~G~aa~~a~~~~aPlta~vl~~Eltg~~~~l~p~~ia~~ia~~v~~~~~~~siY~~~l 401 (402)
T cd01031 322 LFGTILVQLGPIPISAPATFAIAGMAAFFAAVVRAPITAIILVTEMTGNFNLLLPLMVVCLVAYLVADLLGGKPIYEALL 401 (402)
T ss_pred HHHHHHHHhcCcccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCChhHHHh
Confidence 999988752 3578999999999999999999999999999999999999999999999999999999 999999987
Q ss_pred H
Q 003966 571 E 571 (783)
Q Consensus 571 ~ 571 (783)
+
T Consensus 402 ~ 402 (402)
T cd01031 402 E 402 (402)
T ss_pred C
Confidence 4
No 10
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=7.3e-59 Score=519.62 Aligned_cols=408 Identities=21% Similarity=0.282 Sum_probs=327.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhcc--CCCCCC
Q 003966 87 LKWSLACLVGLLTGLIATLINLAVENIAGYKLLAVV-SFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAP--TAAGPG 163 (783)
Q Consensus 87 ~~w~~~~liGv~~Glva~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p--~a~GsG 163 (783)
++|++++++|+++|+++.+|+..+++++++.+.... ++....+...+| ...+++++.+++++++..++.| ..+++|
T Consensus 3 ~~~~~a~~iG~~~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~p~~ggll~g~~~~~~~~~~~~~~~g 81 (418)
T PRK01610 3 RRLLIATVVGILAALAVAGFRHAMLLLEWLFLSNDSGSLVNAATNLSPW-RRLLTPALGGLAAGLLLWGWQKFTQQRPHA 81 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchhhcccccchH-HHHHHHHHHHHHHHHHHHHHcccccccCCC
Confidence 356689999999999999999999998775443211 111111111223 4456777788888888877776 477899
Q ss_pred HHHHHHHHhCCCCCCcchhHHHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHhhcCCCCcccchhhhhhccCCcchh
Q 003966 164 IPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDR 243 (783)
Q Consensus 164 ipev~~~lng~~~~~~l~~~tl~~K~~~~~~sv~sG~s~G~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~ 243 (783)
++++++.++. ++.+++|+.+.|++++++++++|+|+|||||++|+|+++|++++| |++ +++||
T Consensus 82 ~~~vi~av~~---~g~~~~~~~~~k~~~~~l~igsG~S~GrEGP~v~iGa~~g~~~~~-----------~~~---~~~~~ 144 (418)
T PRK01610 82 PTDYMEALQT---DGQFDYAASLVKSLASLLVVTSGSAIGREGAMILLAALAASCFAQ-----------RFT---PRQEW 144 (418)
T ss_pred cHHHHHHHHc---CCCCCccHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH-----------HhC---ChHHH
Confidence 9999887765 467899999999999999999999999999999999999999997 444 56889
Q ss_pred hhHHHhhhhhhhhhhccCcccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCcceeeeecC
Q 003966 244 RDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSN 323 (783)
Q Consensus 244 r~lv~~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~~~~~~~~~~~~~fg~~~~~~f~~~~ 323 (783)
|++++||+|||+||+||||++|++|++|++.+.++.+.+.++++++.+++++.+.+ ++... ..|+++.
T Consensus 145 r~li~~GaaAGlaa~F~aPlaG~lFa~E~l~~~~~~~~~~p~~ias~~a~~v~~~~-----------~g~~~-~~~~i~~ 212 (418)
T PRK01610 145 KLWIACGAAAGMASAYHAPLAGSLFIAEILFGTLMLASLGPVVISAVVALLTTNLL-----------NGSDA-LLYNVQL 212 (418)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-----------cCCCC-CeeecCC
Confidence 99999999999999999999999999999988888888888888888777777643 23221 2466653
Q ss_pred CcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHhhhhccccccccCCCCCCC
Q 003966 324 VPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSF 403 (783)
Q Consensus 324 ~~~~~~~~~l~~~i~lGv~~Gllg~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~ 403 (783)
...++..++++++++|+++|++|.+|+++.++..+++++++. .+.+.+.+.+++++++.++.|++
T Consensus 213 -~~~~~~~~l~~~i~lGii~Gl~g~~f~~~~~~~~~~~~~~~~----~~~~~~~lggli~g~l~~~~p~~---------- 277 (418)
T PRK01610 213 -SVTVQARDYALIISTGLLAGLCGPLLLTLMNASHRGFVSLKL----APPWQLALGGLIVGLLSLFTPAV---------- 277 (418)
T ss_pred -cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc----chhHHHHHHHHHHHHHHHHhhHH----------
Confidence 456788999999999999999999999999888777765432 23345677788888888877865
Q ss_pred CCCCCCCCCCCCcccccCCCCCchhhHHHhhcCcHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHhhcCccccccch
Q 003966 404 PETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFL 483 (783)
Q Consensus 404 ~~~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~l~~~~~~k~~lt~~t~g~g~~gG~f~ 483 (783)
.| +.|+. ++.+++ .+..+..++++++.|+++|++|+|+|.|||+|.
T Consensus 278 ------~G------------~G~~~------------i~~~~~----~~~~~~~l~~l~l~K~~~t~lt~gsG~~GG~f~ 323 (418)
T PRK01610 278 ------WG------------NGYSV------------VQSFLT----APPLLMLIAGIFLCKLLAVLASSGSGAPGGVFT 323 (418)
T ss_pred ------hC------------CcHHH------------HHHHHc----CChhHHHHHHHHHHHHHHHHHHHhcCCCchhhH
Confidence 22 12333 333332 233445566678899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcc---CCcchHHHHHHHhhhhhhhhhchhHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh
Q 003966 484 PIILMGSAYGRLLGMAMGSY---TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDS 560 (783)
Q Consensus 484 P~l~iGa~~G~l~g~~~~~~---~~~~~~~~alvGaaa~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~ia~~v~~~ 560 (783)
|++++||++|.++|++++.. ...++..||++||+|++++++|+|++++++++|+||++++++|+|+++++|+++++.
T Consensus 324 P~l~iGa~~G~~~g~~~~~~~~~~~~~~~~~a~vGmaA~laa~~~aPltaivl~~Eltg~~~~~~p~~ia~~ia~~vs~~ 403 (418)
T PRK01610 324 PTLFVGLAIGMLYGRSLGLWLPDGEEITLLLGLTGMATLLAATTHAPIMSTLMICEMTGEYQLLPGLLIACVIASVISRT 403 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998742 223478999999999999999999999999999999999999999999999999999
Q ss_pred c-CccHHHHHHHhc
Q 003966 561 F-NPSIYEIILELK 573 (783)
Q Consensus 561 ~-~~~iy~~~l~~k 573 (783)
+ ++++|+.++..+
T Consensus 404 ~~~~siy~~~~~~~ 417 (418)
T PRK01610 404 LRRDSIYRQHTAEH 417 (418)
T ss_pred hCCCCchHHHHhcc
Confidence 8 999999998754
No 11
>PRK05277 chloride channel protein; Provisional
Probab=100.00 E-value=2e-58 Score=521.74 Aligned_cols=409 Identities=28% Similarity=0.497 Sum_probs=334.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHH
Q 003966 90 SLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEIKA 169 (783)
Q Consensus 90 ~~~~liGv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~ 169 (783)
++++++|+++|+++.+|+..+++++++++....+ .... .+..|..++.++.+++.++.+++.++.|.++|+|+||+++
T Consensus 2 ~~~i~iGi~~Gl~~~~f~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~i~~~l~~~~~p~~~GsGi~~i~~ 79 (438)
T PRK05277 2 FMAAVVGTLTGLVGVAFELAVDWVQNQRLGLLAS-VADN-GLLLWIVAFLISAVLAMIGYFLVRRFAPEAGGSGIPEIEG 79 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccc-chHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHH
Confidence 4689999999999999999999999998766432 1111 2233444556677777788889999999999999999999
Q ss_pred HHhCCCCCCcch-hHHHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHhhcCCCCcccchhhhhhccCCcchhhhHHH
Q 003966 170 YLNGVDTPNMFG-ATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLIT 248 (783)
Q Consensus 170 ~lng~~~~~~l~-~~tl~~K~~~~~~sv~sG~s~G~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv~ 248 (783)
++++.+. ++ .++++.|++++++++++|+|+|||||++|+|+++|+++++ +++. +++.++|++++
T Consensus 80 ~l~~~~~---~~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iGa~ig~~~~~-----------~~~~-~~~~~~~~li~ 144 (438)
T PRK05277 80 ALEGLRP---VRWWRVLPVKFFGGLGTLGSGMVLGREGPTVQMGGNIGRMVLD-----------IFRL-RSDEARHTLLA 144 (438)
T ss_pred HHcCCCc---cchHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHH-----------Hccc-CCHHHHHHHHH
Confidence 9997532 33 6789999999999999999999999999999999999997 3332 25678999999
Q ss_pred hhhhhhhhhhccCcccceeeeeeecchhh--hhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCcceeeeecCCcc
Q 003966 249 CGSSSGVCAAFRAPVGGVLFSLEEVATWW--RSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPV 326 (783)
Q Consensus 249 ~GaAAGvaaaF~APigGvLFalE~~~~~~--~~~~~~~~f~~~~va~~v~~~~~~~~~~~~~~~fg~~~~~~f~~~~~~~ 326 (783)
||+|||+||+||||++|++|++|++.+.+ +.+.+++.++++.+++++.+.+ ++..+ .|+++. ..
T Consensus 145 ~G~aaglaa~f~APl~g~lf~~E~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~-----------~g~~~--~~~~~~-~~ 210 (438)
T PRK05277 145 AGAAAGLAAAFNAPLAGILFVIEEMRPQFRYSLISIKAVFIGVIMATIVFRLF-----------NGEQA--VIEVGK-FS 210 (438)
T ss_pred HHHHHhHHHhcCCchHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHh-----------cCCCc--eEeccC-CC
Confidence 99999999999999999999999987644 6667888888888888888754 23333 344442 23
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHhhhhccccccccCCCCCCCCCC
Q 003966 327 RYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPET 406 (783)
Q Consensus 327 ~~~~~~l~~~i~lGv~~Gllg~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~ 406 (783)
..+..++++++++|+++|++|.+|++++.++.+++++++.+.+++.++.+.+++++++++.++.|..
T Consensus 211 ~~~~~~l~~~i~lGi~~G~~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gl~~g~l~~~~p~~------------- 277 (438)
T PRK05277 211 APPLNTLWLFLLLGIIFGIFGVLFNKLLLRTQDLFDRLHGGNKKRWVLMGGAVGGLCGLLGLLAPAA------------- 277 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHhhhh-------------
Confidence 3567889999999999999999999999999888876543323334456677777888887777755
Q ss_pred CCCCCCCCCcccccCCCCCchhhHHHhhcCcHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHhhcCccccccchHHH
Q 003966 407 CPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPII 486 (783)
Q Consensus 407 ~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~l~~~~~~k~~lt~~t~g~g~~gG~f~P~l 486 (783)
.| +.|+ .+..+++ +++++..++.++++|++++++|+|+|+|||.|.|++
T Consensus 278 ---~g------------~G~~------------~i~~~~~----~~~~~~~l~~~~~~K~i~t~ls~gsG~~GG~f~Psl 326 (438)
T PRK05277 278 ---VG------------GGFN------------LIPIALA----GNFSIGMLLFIFVARFITTLLCFGSGAPGGIFAPML 326 (438)
T ss_pred ---cC------------ChHH------------HHHHHHc----CCchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 12 1233 3344443 345666777888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcc---CCcchHHHHHHHhhhhhhhhhchhHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhc-C
Q 003966 487 LMGSAYGRLLGMAMGSY---TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-N 562 (783)
Q Consensus 487 ~iGa~~G~l~g~~~~~~---~~~~~~~~alvGaaa~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~-~ 562 (783)
++||++|+++|.+++.. ...+|..|+++||+|++++++|+|+|++++++|+||++++++|+|+++++|+++++.+ +
T Consensus 327 ~iGa~~G~~~g~~~~~~~p~~~~~~~~~a~~G~aA~la~~~~aPlt~~v~~~Eltg~~~~l~p~lia~~~A~~v~~~~~~ 406 (438)
T PRK05277 327 ALGTLLGLAFGMVAAALFPQYHIEPGTFAIAGMGALFAATVRAPLTGIVLVLEMTDNYQLILPLIITCLGATLLAQFLGG 406 (438)
T ss_pred HHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999987652 2578999999999999999999999999999999999999999999999999999999 7
Q ss_pred ccHHHHHHHhc
Q 003966 563 PSIYEIILELK 573 (783)
Q Consensus 563 ~~iy~~~l~~k 573 (783)
+++||.++++.
T Consensus 407 ~~iy~~~l~~~ 417 (438)
T PRK05277 407 KPIYSALLERT 417 (438)
T ss_pred CChHHHHHHHH
Confidence 99999999864
No 12
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=100.00 E-value=4.4e-57 Score=497.64 Aligned_cols=346 Identities=33% Similarity=0.605 Sum_probs=280.0
Q ss_pred HHHHHHHHHHHhccCCCCCCHHHHHHHHhCCCCCCcchhHHHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHhhcCC
Q 003966 144 LTLVAAVLCVCFAPTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGG 223 (783)
Q Consensus 144 ~~~~a~~l~~~~~p~a~GsGipev~~~lng~~~~~~l~~~tl~~K~~~~~~sv~sG~s~G~EGP~vhiGa~igs~l~~~~ 223 (783)
++++++++++++.|+++|+||||+++.+++.+. .+++|+.+.|++++++++++|+|+|||||++|+|+++|++++|
T Consensus 2 ~~~~~~~l~~~~~p~~~g~Gi~~v~~~~~~~~~--~~~~~~~~~k~~~~~~s~~~G~s~G~EGp~v~iga~i~~~~~~-- 77 (355)
T PF00654_consen 2 GGLLSGLLWKKFAPEAAGSGIPEVKAALRGKSG--RLPFRTLPVKFVGSILSLGSGLSVGREGPSVQIGAAIGSWLGR-- 77 (355)
T ss_dssp HHHHHHHHHHHC-GGGSB-SHHHHHHHCTTSS-----HHHHHHHHHHHHHHHHHTT-S-BSHHHHHHHHHHHHHHHHH--
T ss_pred EEEEeeHHHHHHCCccCCCCHHHHHHHHhCCCC--CCCHHHHHHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHH--
Confidence 467788899999999999999999999998533 4999999999999999999999999999999999999999997
Q ss_pred CCcccchhhhhhccCCcch-hhhHHHhhhhhhhhhhccCcccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 003966 224 PDNHRIKWQWLRYFNNDRD-RRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEI 302 (783)
Q Consensus 224 s~~~~l~~~~~~~f~~~~~-~r~lv~~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~~~~~ 302 (783)
+++. ++++ +|.+++||+|||+||+||||++|++|++|++.++++.+.+|++++++.+++++.+.+.
T Consensus 78 ---------~~~~--~~~~~~r~l~~~g~aAglaa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~-- 144 (355)
T PF00654_consen 78 ---------RFRL--SRNETRRLLLAAGAAAGLAAAFNAPLAGVLFALEELSRDFSVRLLLPALVASIVATLVSRLLF-- 144 (355)
T ss_dssp ---------HTT----CHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHCCTCHCCSTTTHHHHHHHHHHHHHHHHHHH--
T ss_pred ---------hhcc--cchHHHhHHHHHHHHHHHHHHhcCCcccceehhheeeccccchhhHHHHHHHHHHHHHHHHHc--
Confidence 4444 3445 7779999999999999999999999999999999999999999999999999998753
Q ss_pred HhcCCccccCCCcceeee-ecCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHH
Q 003966 303 CTSGKCGLFGTGGLIMFD-VSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSV 381 (783)
Q Consensus 303 ~~~~~~~~fg~~~~~~f~-~~~~~~~~~~~~l~~~i~lGv~~Gllg~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (783)
+..+ .|+ ++. ...+++.|+++++++|++||++|.+|+++++++.+++++++ +.+.++++++++.++
T Consensus 145 ---------~~~~--~f~~~~~-~~~~~~~~~~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~-~~~~~~~l~~~i~gl 211 (355)
T PF00654_consen 145 ---------GNHP--IFGSVPQ-LFPFSLWELPLFLLLGIICGLLGALFNRLLRWLRKFFRKLK-RLKIPPILRPVIGGL 211 (355)
T ss_dssp ---------TSS---SS---TT------GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHH
T ss_pred ---------CcCc--ccccccc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccchHHHHHHHHH
Confidence 2232 244 442 34789999999999999999999999999999999888775 333445668899999
Q ss_pred HHHhhhhcccc--ccccCCCCCCCCCCCCCCCCCCCcccccCCCCCchhhHHHhhcCcHHHHHHhhcCCCCCCCchhHHH
Q 003966 382 FTSVCQYCLPF--LADCKACDPSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSIL 459 (783)
Q Consensus 382 ~~~~~~~~~p~--~~~c~~~~~~~~~~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~l~ 459 (783)
+++++.++.|+ + ++++++.++++++++ ...+++..++
T Consensus 212 ~~g~l~~~~p~~~~----------------------------------------~g~G~~~i~~ll~~~-~~~~~~~~l~ 250 (355)
T PF00654_consen 212 VIGLLAFFFPEGSV----------------------------------------LGSGYELIQSLLSGS-PPWFSLGSLL 250 (355)
T ss_dssp HHHHHHHSSGG-SG----------------------------------------SSSSTTHHHHHCTT-----S-HHHHH
T ss_pred HHHHHHHHHhhhcc----------------------------------------cCCcHHHHHHHHcCC-cchhhHHHHH
Confidence 99999999886 4 112233455555432 2257788999
Q ss_pred HHHHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHHhhccC----CcchHHHHHHHhhhhhhhhhchhHHHHHHHH
Q 003966 460 IFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYT----NIDQGLYAVLGAASLMAGSMRMTVSLCVIFL 535 (783)
Q Consensus 460 ~~~~~k~~lt~~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~~~----~~~~~~~alvGaaa~l~g~~r~pis~~vi~~ 535 (783)
+++++|+++|++|+++|+|||.|+|++++||++|++++.+++... ..+|+.|+++||+|++++++|+|+++++|++
T Consensus 251 ~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~~~~~~~~~~~~~~~~~~~~al~G~~a~~~a~~~~Plt~~vl~~ 330 (355)
T PF00654_consen 251 LLFLLKFLATALTLGSGAPGGIFFPSLFIGAALGRLFGALLGSFFPGISSVDPGVYALVGMAAFLAAVTRAPLTAIVLVL 330 (355)
T ss_dssp HHHHHHHHHHHHHHHTT-BSBSHHHHHHHHHHHHHHHHHHHHHH-GGG-T-SHHHHHHHHTTHHHHHHCS-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccCCCCEEccHHHHHHHHHHHHHHHHHhhCCCcCCCchHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999999999999999999999999999999999999987641 2379999999999999999999999999999
Q ss_pred HHhCCchhHHHHHHHHHHHHHHHhh
Q 003966 536 ELTNNLLLLPITMIVLLIAKTVGDS 560 (783)
Q Consensus 536 ElTg~~~~l~pimia~~ia~~v~~~ 560 (783)
|+|||+++++|+|+++++|+.++++
T Consensus 331 Eltg~~~~~~p~lia~~~a~~v~~~ 355 (355)
T PF00654_consen 331 ELTGDFQLLLPLLIAVAVAYLVARW 355 (355)
T ss_dssp HHH--GGGHHHHHHHHHHHHHHHH-
T ss_pred HHhCCHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999873
No 13
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=2.1e-56 Score=497.96 Aligned_cols=385 Identities=24% Similarity=0.351 Sum_probs=306.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhCC---CC
Q 003966 100 GLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEIKAYLNGV---DT 176 (783)
Q Consensus 100 Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~~lng~---~~ 176 (783)
|+++..++..+++++++.+.... .+ +|+.+++.+++.+ +..+++.++.|+++||||||+++.+++. +.
T Consensus 1 g~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~p~~~~-~~~~~~~~~~p~~~gsGi~~v~~~~~~~~~~~~ 71 (390)
T cd01034 1 GLVALLFAKLADLALALFQRLTA----TH----PWLPLLLTPAGFA-LIAWLTRRFFPGAAGSGIPQVIAALELPSAAAR 71 (390)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHH----hc----hHHHHHHHHHHHH-HHHHHHHhhCCCCCCCCHHHHHHHHcccccccc
Confidence 56788999999999988775432 12 2333445565554 4455666789999999999999998852 35
Q ss_pred CCcchhHHHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHhhcCCCCcccchhhhhhccCCcchhhhHHHhhhhhhhh
Q 003966 177 PNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVC 256 (783)
Q Consensus 177 ~~~l~~~tl~~K~~~~~~sv~sG~s~G~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv~~GaAAGva 256 (783)
++.+++|+++.|++++++++++|+|+|||||++|+|+++|++++| +++. ++++|||++++||+|||+|
T Consensus 72 ~~~~~~r~~~~k~i~~~l~i~~G~s~GrEGP~v~iga~i~~~~~~-----------~~~~-~~~~~~r~li~~GaaAGla 139 (390)
T cd01034 72 RRLLSLRTAVGKILLTLLGLLGGASVGREGPSVQIGAAVMLAIGR-----------RLPK-WGGLSERGLILAGGAAGLA 139 (390)
T ss_pred cccccHHHHHHHHHHHHHHHHcCCCcCCcccHHHHHHHHHHHHHH-----------Hccc-CchHHHHHHHHHHHHHhHH
Confidence 568999999999999999999999999999999999999999997 3332 1368999999999999999
Q ss_pred hhccCcccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCcceeeeecCCcccccchhhhHH
Q 003966 257 AAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPV 336 (783)
Q Consensus 257 aaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~~~~~~~~~~~~~fg~~~~~~f~~~~~~~~~~~~~l~~~ 336 (783)
|+||||++|++|++||+.++|+.+..++.+.++.+++++.+.+ +++.+ .|+++. ...+++.+++++
T Consensus 140 a~F~aPlaG~lF~~E~~~~~~~~~~~~~~~~~~~~a~~~~~~~-----------~g~~~--~f~~~~-~~~~~~~~~~~~ 205 (390)
T cd01034 140 AAFNTPLAGIVFAIEELSRDFELRFSGLVLLAVIAAGLVSLAV-----------LGNYP--YFGVAA-VALPLGEAWLLV 205 (390)
T ss_pred HHhCCcchhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH-----------cCCCC--ccCCCC-CCcCCHHHHHHH
Confidence 9999999999999999999999888888888888887777643 23333 344442 233567889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hchhhhHHHHHHHHHHHHhhhhccccccccCCCCCCCCCCCCCCCCCCC
Q 003966 337 TLIGIIGGILGGLYNHILHKVLRLYNLINQ-KGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGN 415 (783)
Q Consensus 337 i~lGv~~Gllg~~f~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~p~~g~~g~ 415 (783)
+++|+++|++|.+|++.+.++.+++++... +.+.++++.+.+.+++++++.++.|... .|
T Consensus 206 illGii~G~~g~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~---------------~G---- 266 (390)
T cd01034 206 LVCGVVGGLAGGLFARLLVALSSGLPGWVRRFRRRRPVLFAALCGLALALIGLVSGGLT---------------FG---- 266 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHhCCCcc---------------cc----
Confidence 999999999999999999998888766432 2233445666677777777766554210 11
Q ss_pred cccccCCCCCchhhHHHhhcCcHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHhhcCccccccchHHHHHHHHHHHH
Q 003966 416 FKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRL 495 (783)
Q Consensus 416 ~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~l~~~~~~k~~lt~~t~g~g~~gG~f~P~l~iGa~~G~l 495 (783)
..|+. ++.+++.+ .. ....++++|+++|++|+|+|+|||.|.|++++||++|++
T Consensus 267 --------~G~~~------------i~~~~~~~--~~----~~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~iGa~~G~~ 320 (390)
T cd01034 267 --------TGYLQ------------ARAALEGG--GG----LPLWFGLLKFLATLLSYWSGIPGGLFAPSLAVGAGLGSL 320 (390)
T ss_pred --------CcHHH------------HHHHHhCC--Cc----ccHHHHHHHHHHHHHHHHcCCCcceechHHHHHHHHHHH
Confidence 01333 33344321 11 123456799999999999999999999999999999999
Q ss_pred HHHHhhccCCcchHHHHHHHhhhhhhhhhchhHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhc-CccHHH
Q 003966 496 LGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYE 567 (783)
Q Consensus 496 ~g~~~~~~~~~~~~~~alvGaaa~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~-~~~iy~ 567 (783)
++.+++ ..++..|+++||+|++++++|+|++++++++|+||++++++|+|+++++|+++++.+ ++++||
T Consensus 321 ~~~~~~---~~~~~~~a~~G~aA~laa~~~aPlt~~vl~~Elt~~~~~l~p~lia~~~A~~v~~~~~~~~iY~ 390 (390)
T cd01034 321 LAALLG---SVSQGALVLLGMAAFLAGVTQAPLTAFVIVMEMTGDQQMLLPLLAAALLASGVSRLVCPEPLYH 390 (390)
T ss_pred HHHHhc---CCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 999885 258999999999999999999999999999999999999999999999999999998 788885
No 14
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=2.1e-56 Score=496.56 Aligned_cols=385 Identities=19% Similarity=0.269 Sum_probs=308.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhCCC
Q 003966 96 GLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEIKAYLNGVD 175 (783)
Q Consensus 96 Gv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~~lng~~ 175 (783)
|+++|+++..|+..+++++++.+....+...+.....+++.....+++.+++++++..++. ..|+|+||+++++++.
T Consensus 1 G~~~gl~a~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ggl~~~l~~~~~~--~~g~gi~~v~~~~~~~- 77 (388)
T cd01033 1 GVGAGLGGGLLTLLLHGVQHLAFGYSEGSFLTGVAAVSPIRRALSLTVGGLIAGLGWYLLR--RKGKKLVSIKQAVRGK- 77 (388)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCccccchhhhccCChHHHHHHHHHHHHHHHHHHHHHh--ccCCCcccHHHHhcCC-
Confidence 6889999999999999999998864321111100011222334456666677776544333 4699999999999873
Q ss_pred CCCcchhHHHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHhhcCCCCcccchhhhhhccCCcchhhhHHHhhhhhhh
Q 003966 176 TPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGV 255 (783)
Q Consensus 176 ~~~~l~~~tl~~K~~~~~~sv~sG~s~G~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv~~GaAAGv 255 (783)
+.+++++.+.|.+++++++++|+|+|||||++|+|+++|+++++ +++. +++|||++++||+|||+
T Consensus 78 --~~~~~~~~~~k~~~~~l~ig~G~s~G~EGP~v~iGa~i~~~~~~-----------~~~~--~~~~~r~li~~GaaAGl 142 (388)
T cd01033 78 --KRMPFWETIIHAVLQIVTVGLGAPLGREVAPREVGALLAQRFSD-----------WLGL--TVADRRLLVACAAGAGL 142 (388)
T ss_pred --CCCCHHHHHHHHHHHHhhhhcCCCcCcccHHHHHHHHHHHHHHH-----------HhCC--CHHHHHHHHHHHHHHHH
Confidence 45889999999999999999999999999999999999999997 4444 67899999999999999
Q ss_pred hhhccCcccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCcceeeeecCCcccccchhhhH
Q 003966 256 CAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIP 335 (783)
Q Consensus 256 aaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~~~~~~~~~~~~~fg~~~~~~f~~~~~~~~~~~~~l~~ 335 (783)
||+||||++|++|++|++.++|+.+.++++++++.+++++.+.+ ++..+ .|.++. .++++.++++
T Consensus 143 aa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~-----------~g~~~--~f~~~~--~~~~~~~l~~ 207 (388)
T cd01033 143 AAVYNVPLAGALFALEILLRTISLRSVVAALATSAIAAAVASLL-----------KGDHP--IYDIPP--MQLSTPLLIW 207 (388)
T ss_pred HHHhCCchHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh-----------CCCCc--eeecCC--CCCCHHHHHH
Confidence 99999999999999999999999999999999998888888753 34444 455553 3345778999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHhhhhccccccccCCCCCCCCCCCCCCCCCCC
Q 003966 336 VTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGN 415 (783)
Q Consensus 336 ~i~lGv~~Gllg~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~p~~g~~g~ 415 (783)
++++|+++|++|.+|+++++++.+++++. .+..+.+.+.+++++++.++.|++ .|
T Consensus 208 ~illGi~~Gl~~~lf~~~~~~~~~~~~~~-----~~~~~~~~l~gl~~g~~~~~~p~~----------------~G---- 262 (388)
T cd01033 208 ALLAGPVLGVVAAGFRRLSQAARAKRPKG-----KRILWQMPLAFLVIGLLSIFFPQI----------------LG---- 262 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cchHHHHHHHHHHHHHHHHHHHHH----------------hC----
Confidence 99999999999999999999888766321 112234556677788777877865 12
Q ss_pred cccccCCCCCchhhHHHhhcCcHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHhhcCccccccchHHHHHHHHHHHH
Q 003966 416 FKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRL 495 (783)
Q Consensus 416 ~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~l~~~~~~k~~lt~~t~g~g~~gG~f~P~l~iGa~~G~l 495 (783)
++++.++.+++. +++...++.++++|+++|++|+|+|.|||+|.|++++||++|++
T Consensus 263 --------------------~G~~~i~~~~~~----~~~~~~ll~~~~~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~ 318 (388)
T cd01033 263 --------------------NGRALAQLAFST----TLTLSLLLILLVLKIVATLLALRAGAYGGLLTPSLALGALLGAL 318 (388)
T ss_pred --------------------CcHHHHHHHHcC----CchHHHHHHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHH
Confidence 122334444432 34556677788999999999999999999999999999999999
Q ss_pred HHHHhhc-cCCcchHHHHHHHhhhhhhhhhchhHHHHHHHHHHhC-CchhHHHHHHHHHHHHHHHhhcC
Q 003966 496 LGMAMGS-YTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTN-NLLLLPITMIVLLIAKTVGDSFN 562 (783)
Q Consensus 496 ~g~~~~~-~~~~~~~~~alvGaaa~l~g~~r~pis~~vi~~ElTg-~~~~l~pimia~~ia~~v~~~~~ 562 (783)
+|++++. .++.++..|+++||||++++++|+|++++++++|+|| +++.++|+|+++++|+.+++.+.
T Consensus 319 ~g~~~~~~~p~~~~~~~a~~GmaA~laa~~~aPlt~ivl~~Eltg~~~~~l~Pl~ia~~~a~~vs~~~~ 387 (388)
T cd01033 319 LGIVWNALLPPLSIAAFALIGAAAFLAATQKAPLTALILVLEFTRQNPLFLIPLMLAVAGAVAVSRFIL 387 (388)
T ss_pred HHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999865 2457889999999999999999999999999999999 99999999999999999998663
No 15
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-54 Score=488.39 Aligned_cols=409 Identities=28% Similarity=0.465 Sum_probs=324.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHH-HHHHHhccCCCCCCHHHH
Q 003966 89 WSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAA-VLCVCFAPTAAGPGIPEI 167 (783)
Q Consensus 89 w~~~~liGv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~l~~~~~p~a~GsGipev 167 (783)
+....++|+++++....++....+.......... ..+.. .+++.+.....++++++ +++.++.|+++|+|||++
T Consensus 23 i~~~~~lgvi~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~l~~~~~gl~~g~~~~~~~~p~~~g~Gi~~~ 97 (443)
T COG0038 23 IGIAAALGVIVGLFAVALDLALLLLGRLRGGLLS----AAQAP-GPWLLPLVPALGGLLVGALLVYKFAPEARGSGIPQA 97 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccc----ccccc-hhHHHHHHHHHHHHHHHHHHHHHhCccccCCChhHH
Confidence 4477788888888777777776666554432111 01111 12233344555566666 788899999999999999
Q ss_pred HHHHhCCCCCCcchhHHHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHhhcCCCCcccchhhhhhccCCcchhhhHH
Q 003966 168 KAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLI 247 (783)
Q Consensus 168 ~~~lng~~~~~~l~~~tl~~K~~~~~~sv~sG~s~G~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv 247 (783)
++.+++. ++.+++|..++|++++++++++|+|+|||||+||+|+++|+.+++ |++. ++.|||.++
T Consensus 98 i~a~~~~--~~~~~~~~~~vk~~~~~l~i~sG~s~GrEGP~vqiga~~g~~~~~-----------~l~~--~~~~~r~Ll 162 (443)
T COG0038 98 IEALHGR--KGRISPRVLPVKLVATLLTIGSGASLGREGPSVQIGAAIGSLLGR-----------LLKL--SREDRRILL 162 (443)
T ss_pred HHHHhcC--CCcccHHHHHHHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHH-----------HhCC--CHHHHHHHH
Confidence 9988874 567889999999999999999999999999999999999999997 5554 578999999
Q ss_pred HhhhhhhhhhhccCcccceeeeeeecchh-hhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCcceeeeecCCcc
Q 003966 248 TCGSSSGVCAAFRAPVGGVLFSLEEVATW-WRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPV 326 (783)
Q Consensus 248 ~~GaAAGvaaaF~APigGvLFalE~~~~~-~~~~~~~~~f~~~~va~~v~~~~~~~~~~~~~~~fg~~~~~~f~~~~~~~ 326 (783)
+||+|||+||+|||||+|++|++||+... |+.+.++++++++.++..+.+.+ ++.+. .+.+.. ..
T Consensus 163 ~~GaAaGlaaaF~aPlagvlF~~E~l~~~~~~~~~l~p~~vaa~va~~v~~~~-----------~~~~~--~~~~~~-~~ 228 (443)
T COG0038 163 AAGAAAGLAAAFNAPLAGALFAIEVLYGRFLEYRALVPVLVAAVVALLVAGLF-----------GGPHF--LLPIVT-TP 228 (443)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHc-----------CCCCc--eeeccc-cC
Confidence 99999999999999999999999999987 88888888888887777777643 22222 344443 45
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHhhhhccccccccCCCCCCCCCC
Q 003966 327 RYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPET 406 (783)
Q Consensus 327 ~~~~~~l~~~i~lGv~~Gllg~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~ 406 (783)
.++.++++.++++|+++|++|.+|.++..+.+++.++ .+..+.+.+.+.+++++.+.++.|..
T Consensus 229 ~~~~~~~~~~~~lGii~G~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~l~g~~~l~~P~~------------- 291 (443)
T COG0038 229 HMSLWDLLLYLVLGIIAGLFGVLLSRLLALSRRFFRR----LPLPPLLRPALGGLLVGALGLLFPEV------------- 291 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CcchHHHHHHHHHHHHHHHHHhchhh-------------
Confidence 6788999999999999999999999988766444433 23345677788888888888988876
Q ss_pred CCCCCCCCCcccccCCCCCchhhHHHhhcCcHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHhhcCccccccchHHH
Q 003966 407 CPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPII 486 (783)
Q Consensus 407 ~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~l~~~~~~k~~lt~~t~g~g~~gG~f~P~l 486 (783)
.|. .|+.+... ++ .++.+..++.++++|++.|.+|+|+|.|||+|+|++
T Consensus 292 ---lg~------------G~~~~~~~------------~~----~~~~~~~l~~l~~~K~l~t~~s~gSG~~GGif~Psl 340 (443)
T COG0038 292 ---LGN------------GYGLIQLA------------LA----GEGGLLVLLLLFLLKLLATLLSYGSGAPGGIFAPSL 340 (443)
T ss_pred ---hCC------------CccHHHHH------------Hc----cCccHHHHHHHHHHHHHHHHHHHhcCCCcceehHHH
Confidence 221 12222111 11 233333367788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccC---CcchHHHHHHHhhhhhhhhhchhHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhc-C
Q 003966 487 LMGSAYGRLLGMAMGSYT---NIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-N 562 (783)
Q Consensus 487 ~iGa~~G~l~g~~~~~~~---~~~~~~~alvGaaa~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~-~ 562 (783)
++||++|..+|.+++... ...++.|+++||+|++++++|+|++++++++|+||+++.++|+|+++++|+.+++.. +
T Consensus 341 ~iGa~lG~~~g~~~~~~~~~~~~~~~~~al~Gm~a~la~~~~aPlta~vlv~EmTg~~~~~l~ll~a~~ia~~~~~~~~~ 420 (443)
T COG0038 341 FIGAALGLAFGALLGLLFPPSILEPGLFALLGMAAFLAATTRAPLTAIVLVLEMTGNYQLLLPLLIACLIAYLVSRLLGG 420 (443)
T ss_pred HHHHHHHHHHHHHHHhhcCccccchHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999887632 345789999999999999999999999999999999999999999999999999988 8
Q ss_pred ccHHHHHHHhcCCCCCC
Q 003966 563 PSIYEIILELKGLPFLD 579 (783)
Q Consensus 563 ~~iy~~~l~~kg~p~l~ 579 (783)
.++|+..+++++.+..+
T Consensus 421 ~~~~~~~~~~~~~~~~~ 437 (443)
T COG0038 421 RPIYTQLLARRGAPILR 437 (443)
T ss_pred CcHHHHHHHhcCchhhh
Confidence 89999999999887543
No 16
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=100.00 E-value=2e-52 Score=466.30 Aligned_cols=380 Identities=28% Similarity=0.476 Sum_probs=312.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhCCC
Q 003966 96 GLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEIKAYLNGVD 175 (783)
Q Consensus 96 Gv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~~lng~~ 175 (783)
|+++|+++.+|+..+++.++++++...+.. .....+++++...+++++++++++..+..| ..|+|+|+++..+++.
T Consensus 1 Gi~~Gl~~~lf~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~v~l~~~~~~~-~~g~G~~~v~~~~~~~- 76 (383)
T cd00400 1 GVLSGLGAVLFRLLIELLQNLLFGGLPGEL--AAGSLSPLYILLVPVIGGLLVGLLVRLLGP-ARGHGIPEVIEAIALG- 76 (383)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcccccc--ccccccHHHHHHHHHHHHHHHHHHHHHhCc-ccCCChHHHHHHHHhC-
Confidence 688999999999999999998876532211 011223445566677777777777766666 8999999999988752
Q ss_pred CCCcchhHHHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHhhcCCCCcccchhhhhhccCCcchhhhHHHhhhhhhh
Q 003966 176 TPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGV 255 (783)
Q Consensus 176 ~~~~l~~~tl~~K~~~~~~sv~sG~s~G~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv~~GaAAGv 255 (783)
.+.+++++++.|++++++++++|+|+|||||++|+|+++|+++++ +++. ++.|+|.+++||+|||+
T Consensus 77 -~~~~~~~~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~~g~~~~~-----------~~~~--~~~~~~~l~~~G~aagl 142 (383)
T cd00400 77 -GGRLPLRVALVKFLASALTLGSGGSVGREGPIVQIGAAIGSWLGR-----------RLRL--SRNDRRILVACGAAAGI 142 (383)
T ss_pred -CCCCCHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHH-----------HhCC--CHHHHHHHHHHHHHHHH
Confidence 345789999999999999999999999999999999999999997 3333 56789999999999999
Q ss_pred hhhccCcccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCcceeeeecCCcccccchhhhH
Q 003966 256 CAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIP 335 (783)
Q Consensus 256 aaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~~~~~~~~~~~~~fg~~~~~~f~~~~~~~~~~~~~l~~ 335 (783)
+|+||||++|++|++|++.++++.+.++++++++.++.++.+.+ ++..+ .|+++. ..+++..++++
T Consensus 143 aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~a~~v~~~~-----------~~~~~--~~~~~~-~~~~~~~~~~~ 208 (383)
T cd00400 143 AAAFNAPLAGALFAIEVLLGEYSVASLIPVLLASVAAALVSRLL-----------FGAEP--AFGVPL-YDPLSLLELPL 208 (383)
T ss_pred HHhcCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-----------cCCCC--eeeCCC-CCcCCHHHHHH
Confidence 99999999999999999999998888999999988888888764 22222 455543 46788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHhhhhccccccccCCCCCCCCCCCCCCCCCCC
Q 003966 336 VTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGN 415 (783)
Q Consensus 336 ~i~lGv~~Gllg~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~p~~g~~g~ 415 (783)
++++|+++|++|.+|++++.++.+++++.+ .++.+.+++.+++++++.++.|+.. |.
T Consensus 209 ~il~Gv~~g~~g~~f~~~~~~~~~~~~~~~----~~~~~~~~i~gll~~~~~~~~p~~~----------------g~--- 265 (383)
T cd00400 209 YLLLGLLAGLVGVLFVRLLYKIERLFRRLP----IPPWLRPALGGLLLGLLGLFLPQVL----------------GS--- 265 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccC----CcHHHHHHHHHHHHHHHHHHHHHHH----------------cC---
Confidence 999999999999999999999888776542 3355667778888888888888761 21
Q ss_pred cccccCCCCCchhhHHHhhcCcHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHhhcCccccccchHHHHHHHHHHHH
Q 003966 416 FKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRL 495 (783)
Q Consensus 416 ~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~l~~~~~~k~~lt~~t~g~g~~gG~f~P~l~iGa~~G~l 495 (783)
| |+. +...++ ++++...++.+++.|++++++|+|+|+|||.|+|++++||++|++
T Consensus 266 --------G-~~~------------~~~~~~----~~~~~~~l~~~~~~K~~~t~l~~~sG~~GG~~~P~l~iGa~~G~~ 320 (383)
T cd00400 266 --------G-YGA------------ILLALA----GELSLLLLLLLLLLKLLATALTLGSGFPGGVFAPSLFIGAALGAA 320 (383)
T ss_pred --------c-HHH------------HHHHHc----CChhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHH
Confidence 1 222 222222 345566777888999999999999999999999999999999999
Q ss_pred HHHHhhcc---CCcchHHHHHHHhhhhhhhhhchhHHHHHHHHHHhCCchhHHHHHHHHHHHH
Q 003966 496 LGMAMGSY---TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAK 555 (783)
Q Consensus 496 ~g~~~~~~---~~~~~~~~alvGaaa~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~ia~ 555 (783)
+|++++.. ...++..|+++||+|++++++|+|++++++++|+||++++++|+|+++++||
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~G~aa~la~~~~aPlt~~vl~~Eltg~~~~l~p~~ia~~ia~ 383 (383)
T cd00400 321 FGLLLPALFPGLVASPGAYALVGMAALLAAVLRAPLTAILLVLELTGDYSLLLPLMLAVVIAY 383 (383)
T ss_pred HHHHHHHhCCcccCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHhCChhhHHHHHHHHHhcC
Confidence 99998752 3568999999999999999999999999999999999999999999998875
No 17
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=3.2e-49 Score=438.24 Aligned_cols=375 Identities=22% Similarity=0.318 Sum_probs=289.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHH
Q 003966 92 ACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEIKAYL 171 (783)
Q Consensus 92 ~~liGv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~~l 171 (783)
++++|+++|+++.+|+..++++.++++.. +|+. ..+++ .+++.+++..++.|. .|+|++|+++.+
T Consensus 2 a~~iGii~G~~~~~f~~~i~~~~~~~~~~------------~~~~-~~~p~-~g~~i~~l~~~~~~~-~~~g~~~v~~~~ 66 (378)
T cd03682 2 ALLIGLLVGSASALFLWSLDWATEFREAH------------PWLL-PFLPL-AGLLIGYLYQKFGKN-SEKGNNLIIEEI 66 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------hHHH-HHHHH-HHHHHHHHHHHhCcc-cCCChHHHHHHH
Confidence 67999999999999999999998875521 1221 22333 344555677666554 578999998877
Q ss_pred hCCCCCCcchhHHHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHhhcCCCCcccchhhhhhccCCcchhhhHHHhhh
Q 003966 172 NGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGS 251 (783)
Q Consensus 172 ng~~~~~~l~~~tl~~K~~~~~~sv~sG~s~G~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv~~Ga 251 (783)
++. .+.+++|.++.|++++.+++++|+|+|||||++|+|+++|+++++ ++|. +++++|++++||+
T Consensus 67 ~~~--~~~~~~~~~~~k~~~~~l~l~~G~s~G~Egp~v~~ga~~~~~~~~-----------~~~~--~~~~~r~l~~~g~ 131 (378)
T cd03682 67 HGP--EEGIPLRMAPLVLFGTVLTHLFGGSAGREGTAVQMGGSLADAFGR-----------VFKL--PEEDRRILLIAGI 131 (378)
T ss_pred Hcc--CCCCchHHHHHHHHHHHHHHHcCCccCCcchHHHHHHHHHHHHHH-----------HhCC--CHHHHHHHHHHHH
Confidence 652 356778999999999999999999999999999999999999997 3443 5568899999999
Q ss_pred hhhhhhhccCcccceeeeeeecc-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCcceeeeecCCcccccc
Q 003966 252 SSGVCAAFRAPVGGVLFSLEEVA-TWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHV 330 (783)
Q Consensus 252 AAGvaaaF~APigGvLFalE~~~-~~~~~~~~~~~f~~~~va~~v~~~~~~~~~~~~~~~fg~~~~~~f~~~~~~~~~~~ 330 (783)
|||++|+||||++|++|++|++. +.++.+.++++++++.+++.+.+.+ +.++ ..|.+.. ..++++
T Consensus 132 aAglaa~f~aPl~g~~f~~E~~~~~~~~~~~~~~~~i~~~~a~~v~~~~------------~~~~-~~~~~~~-~~~~~~ 197 (378)
T cd03682 132 AAGFAAVFGTPLAGAIFALEVLVLGRLRYSALIPCLVAAIVADWVSHAL------------GLEH-THYHIVF-IPTLDP 197 (378)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh------------CCCC-CccccCC-CCCCCH
Confidence 99999999999999999999985 5566666777777777776665542 1111 1244432 356788
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHhhhhccccccccCCCCCCCCCCCCCC
Q 003966 331 MDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTN 410 (783)
Q Consensus 331 ~~l~~~i~lGv~~Gllg~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~p~~ 410 (783)
.++++++++|+++|++|.+|+++.+++.+++++.. ..+++.+.+.+++++++.++.|.- .. .
T Consensus 198 ~~l~~~i~~Gi~~gl~g~~f~~~~~~~~~~~~~~~----~~~~~~~~iggl~~g~~~~~~~~~-------~~-------~ 259 (378)
T cd03682 198 LLFVKVILAGIIFGLAGRLFAELLHFLKKLLKKRI----KNPYLRPFVGGLLIILLVYLLGSR-------RY-------L 259 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CCcHHHHHHHHHHHHHHHHHhcCC-------cc-------c
Confidence 99999999999999999999999999888776432 223445666677777666554321 00 1
Q ss_pred CCCCCcccccCCCCCchhhHHHhhcCcHHHHHH-hhcCCCCCCCchhHHHHHHHHHHHHHHHhhcCccccccchHHHHHH
Q 003966 411 GRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRN-IFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMG 489 (783)
Q Consensus 411 g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~-lf~~~~~~~~~~~~l~~~~~~k~~lt~~t~g~g~~gG~f~P~l~iG 489 (783)
| ..|+.+ +. +++. +.+ ...++.|+++|++|+|+|+|||+|+|++++|
T Consensus 260 G------------~g~~~i------------~~~~~~~----~~~----~~~~l~K~~~t~~s~g~G~~GG~f~P~l~iG 307 (378)
T cd03682 260 G------------LGTPLI------------EDSFFGG----TVY----PYDWLLKLIFTVITLGAGFKGGEVTPLFFIG 307 (378)
T ss_pred c------------CCHHHH------------HHHHhcC----Cch----HHHHHHHHHHHHHHHhcCCCCceechHHHHH
Confidence 1 113322 22 2221 222 2235789999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCcchHHHHHHHhhhhhhhhhchhHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhcCccHHH
Q 003966 490 SAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYE 567 (783)
Q Consensus 490 a~~G~l~g~~~~~~~~~~~~~~alvGaaa~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~~~~iy~ 567 (783)
|++|+++++++ +.++..|+++||+|++++++|+|++++++++|+|| .+.++|+|+++++|+.+++ ++++|+
T Consensus 308 a~~G~~~~~~~----~~~~~~~~~~Gmaa~laa~~raPlt~ivl~~Eltg-~~~~~p~~ia~~ia~~~~~--~~~iy~ 378 (378)
T cd03682 308 ATLGNALAPIL----GLPVSLLAALGFVAVFAGATNTPLACIIMGIELFG-AENAPYFFIACLVAYLFSG--HTGIYG 378 (378)
T ss_pred HHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhC-ccchHHHHHHHHHHHHHhC--CCCCCC
Confidence 99999999998 46789999999999999999999999999999999 5788899999999999997 777874
No 18
>PRK03655 putative ion channel protein; Provisional
Probab=100.00 E-value=2e-46 Score=417.19 Aligned_cols=382 Identities=14% Similarity=0.205 Sum_probs=279.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHH
Q 003966 87 LKWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPE 166 (783)
Q Consensus 87 ~~w~~~~liGv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipe 166 (783)
..+++++++|+++|+++++|...+++++++.|....+....... ..| +.+.++.+.+++++++.++ .|...|+ .|+
T Consensus 11 ~l~~~ailvG~~aGl~a~lf~~li~~~~~l~~~~~~~~~~~~~~-~~~-~~~~~~~~gGllvgll~~~-~~~~~G~-~~~ 86 (414)
T PRK03655 11 LLSLPALAIGIASSLILIVVMKIASVLQNLLWQRLPGTLGIAQD-SPL-WIIGMLTLTGIAVGLVIRF-SPGHAGP-DPA 86 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccc-cch-HHHHHHHHHHHHHHHHHHH-cCCCCCC-hHH
Confidence 34579999999999999999999999999988653222111111 112 2234566777888877754 5766666 576
Q ss_pred HHHHHhCCCCCCcchhHHHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHhhcCCCCcccchhhhhhccCCcchhhhH
Q 003966 167 IKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDL 246 (783)
Q Consensus 167 v~~~lng~~~~~~l~~~tl~~K~~~~~~sv~sG~s~G~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~l 246 (783)
++...++ .++.+.+..|++++++++++|+|+|||||.||+||+++++++| +++ +..++|++
T Consensus 87 ~~~~~~~-----~~~~~~~~~~~~~~~l~l~~G~S~GrEGP~VqiGa~igs~~~r-----------~~~---~~~~~~~l 147 (414)
T PRK03655 87 TEPLIGA-----PVPPSALPGLLLALILGLAGGVSLGPEHPIMTVNIALAVAIGA-----------RLL---PRVNRMDW 147 (414)
T ss_pred HHHHhcC-----CCCccHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHH-----------Hhc---cCCChhHH
Confidence 6666432 4567889999999999999999999999999999999999997 331 33567889
Q ss_pred HHhhhhhhhhhhccCcccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCcceeeeecCCcc
Q 003966 247 ITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPV 326 (783)
Q Consensus 247 v~~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~~~~~~~~~~~~~fg~~~~~~f~~~~~~~ 326 (783)
+.||+|||+||+||||++|++|++||+.+.+.... |...+.+.+++++....... .++ +.+.++++. ..
T Consensus 148 ~~~gaAaGiaAaFnaPLaG~lFa~E~l~~~~~~~~-~~~~~~~v~aa~~a~~v~~~-------~~~--~~~~~~~~~-~~ 216 (414)
T PRK03655 148 TILASAGTIGALFGTPVAAALIFSQTLNGSNEVPL-WDRLFAPLMAAAAGALTTGL-------FFH--PHFSLPIAH-YG 216 (414)
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHH-------hCC--CCcceecCC-CC
Confidence 99999999999999999999999999987766422 22233333333332222111 111 222233332 34
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHhhhhcc-ccccccCCCCCCCCC
Q 003966 327 RYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCL-PFLADCKACDPSFPE 405 (783)
Q Consensus 327 ~~~~~~l~~~i~lGv~~Gllg~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~c~~~~~~~~~ 405 (783)
..+..++++++++|++||++|.+|++...++.+++++++. + .+...+.+++++++.++. |..
T Consensus 217 ~~~~~~~~~~l~lgi~~gl~G~lf~~~~~~~~~~~~~~~~--p---~~~~~lgGl~vg~l~l~~~~~~------------ 279 (414)
T PRK03655 217 QMEMTDILSGAIVAAIAIAAGMVAVWCLPRLHALMHRLKN--P---VLVLGIGGFILGILGVIGGPLT------------ 279 (414)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--c---hHHHHHHHHHHHHHHHHhCCcc------------
Confidence 4567789999999999999999999998888777664321 1 233456666777666543 322
Q ss_pred CCCCCCCCCCcccccCCCCCchhhHHHhhcCcHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHhhcCccccccchHH
Q 003966 406 TCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPI 485 (783)
Q Consensus 406 ~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~l~~~~~~k~~lt~~t~g~g~~gG~f~P~ 485 (783)
.| ..|+. ++.+... +++++..+++++++|+++|++|+|+|+|||+|+|+
T Consensus 280 ----~g------------~Gy~~------------i~~~~~~---~~~~~~~ll~l~l~K~lat~ls~~sG~~GGiF~Ps 328 (414)
T PRK03655 280 ----LF------------KGLDE------------MQQMAAN---QAFSASDYFLLAVVKLAALVVAAASGFRGGRIFPA 328 (414)
T ss_pred ----cc------------CCHHH------------HHHHHhc---CCccHHHHHHHHHHHHHHHHHHHccCCCCceehHH
Confidence 11 12433 3333321 34667778888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCcchHHHHHHHhhhhhhhhhc----hhHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Q 003966 486 ILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMR----MTVSLCVIFLELTNNLLLLPITMIVLLIAKTVG 558 (783)
Q Consensus 486 l~iGa~~G~l~g~~~~~~~~~~~~~~alvGaaa~l~g~~r----~pis~~vi~~ElTg~~~~l~pimia~~ia~~v~ 558 (783)
+++||++|..++++++ ..++...+++||+|+++|++| +|+++.||++|+| +.|+|++++++-|+-
T Consensus 329 L~iGA~~G~~~~~l~p---~~~~~~~v~~~m~a~la~vtr~p~~sp~ta~viv~em~-----~~~l~~~~~~~~~~~ 397 (414)
T PRK03655 329 VFVGVALGLMLHAHVP---AVPAAITVSCAILGIVLVVTRDGWLSLFMAAVVVPDTT-----LLPLLCIVMLPAWLL 397 (414)
T ss_pred HHHHHHHHHHHHHhcc---CCChHHHHHHHHHHHHHHHhccchhhHHHHHHHHhcch-----HHHHHHHHHHHHHHH
Confidence 9999999999999874 467888999999999999999 6999999999999 677777777777665
No 19
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.65 E-value=2.3e-15 Score=168.33 Aligned_cols=182 Identities=19% Similarity=0.215 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHH
Q 003966 88 KWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEI 167 (783)
Q Consensus 88 ~w~~~~liGv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev 167 (783)
.|...+++|+++|+++.+|+..+.+.++++.+... ......+++ ...+.+++.+.+..+..|...|+|.+++
T Consensus 201 ~~~~~illGii~G~~g~lF~~~~~~~~~~~~~~~~----~~~~~~~~~----~~~~~gl~~~~~~~~~~~~~~G~G~~~i 272 (390)
T cd01034 201 AWLLVLVCGVVGGLAGGLFARLLVALSSGLPGWVR----RFRRRRPVL----FAALCGLALALIGLVSGGLTFGTGYLQA 272 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----cccchhhHH----HHHHHHHHHHHHHHhCCCccccCcHHHH
Confidence 35689999999999999999998888765543211 111111111 1122223333333333457889999999
Q ss_pred HHHHhCCCCCCcchhHHHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHhhcCCCCcccchhhhhhccCCcchhhhHH
Q 003966 168 KAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLI 247 (783)
Q Consensus 168 ~~~lng~~~~~~l~~~tl~~K~~~~~~sv~sG~s~G~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv 247 (783)
+..+++. ..+.+..++.|++.+++++++|.++|+|+|++++||++|+.+++ +++ ..+.+.++
T Consensus 273 ~~~~~~~---~~~~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~iGa~~G~~~~~-----------~~~----~~~~~~~a 334 (390)
T cd01034 273 RAALEGG---GGLPLWFGLLKFLATLLSYWSGIPGGLFAPSLAVGAGLGSLLAA-----------LLG----SVSQGALV 334 (390)
T ss_pred HHHHhCC---CcccHHHHHHHHHHHHHHHHcCCCcceechHHHHHHHHHHHHHH-----------Hhc----CCCchHHH
Confidence 9888763 23557788999999999999999999999999999999999987 332 24788999
Q ss_pred HhhhhhhhhhhccCcccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHH
Q 003966 248 TCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRA 298 (783)
Q Consensus 248 ~~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~ 298 (783)
.||+||++|+++|||+++++|++|++.+ ...+.+.++++.+|..+.+.
T Consensus 335 ~~G~aA~laa~~~aPlt~~vl~~Elt~~---~~~l~p~lia~~~A~~v~~~ 382 (390)
T cd01034 335 LLGMAAFLAGVTQAPLTAFVIVMEMTGD---QQMLLPLLAAALLASGVSRL 382 (390)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhCC---hhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999864 24555666666666655553
No 20
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.61 E-value=2.8e-15 Score=167.25 Aligned_cols=183 Identities=20% Similarity=0.192 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHH
Q 003966 88 KWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEI 167 (783)
Q Consensus 88 ~w~~~~liGv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev 167 (783)
.+.+.+++|+++|+++.+|+..+.++++++. ..++ .++. ..+.+++.+. +.++.|+..|+|.+.+
T Consensus 204 ~l~~~illGi~~Gl~~~lf~~~~~~~~~~~~--------~~~~--~~~~----~~l~gl~~g~-~~~~~p~~~G~G~~~i 268 (388)
T cd01033 204 LLIWALLAGPVLGVVAAGFRRLSQAARAKRP--------KGKR--ILWQ----MPLAFLVIGL-LSIFFPQILGNGRALA 268 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------cccc--hHHH----HHHHHHHHHH-HHHHHHHHhCCcHHHH
Confidence 3457899999999999999999888776431 1111 1111 1223334443 3466799999999888
Q ss_pred HHHHhCCCCCCcchhHHHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHhhcCCCCcccchhhhhhccCCcchhhhHH
Q 003966 168 KAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLI 247 (783)
Q Consensus 168 ~~~lng~~~~~~l~~~tl~~K~~~~~~sv~sG~s~G~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv 247 (783)
...+++..... .-+..++.|++.+.+++++|.++|.|+|++.+||++|+.+++ +++.+-++.+.+.++
T Consensus 269 ~~~~~~~~~~~-~ll~~~~~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~-----------~~~~~~p~~~~~~~a 336 (388)
T cd01033 269 QLAFSTTLTLS-LLLILLVLKIVATLLALRAGAYGGLLTPSLALGALLGALLGI-----------VWNALLPPLSIAAFA 336 (388)
T ss_pred HHHHcCCchHH-HHHHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHH-----------HHHHhCCcccHHHHH
Confidence 88877632222 236778999999999999999999999999999999999997 333222345667899
Q ss_pred HhhhhhhhhhhccCcccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHHH
Q 003966 248 TCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAF 299 (783)
Q Consensus 248 ~~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~~ 299 (783)
.||+||++|+++||||++++|++|++.. +...+.+.++++.+++.+.+.+
T Consensus 337 ~~GmaA~laa~~~aPlt~ivl~~Eltg~--~~~~l~Pl~ia~~~a~~vs~~~ 386 (388)
T cd01033 337 LIGAAAFLAATQKAPLTALILVLEFTRQ--NPLFLIPLMLAVAGAVAVSRFI 386 (388)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998652 3456677778888887777653
No 21
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.60 E-value=3.1e-14 Score=144.67 Aligned_cols=135 Identities=21% Similarity=0.282 Sum_probs=113.0
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhh
Q 003966 586 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 665 (783)
Q Consensus 586 l~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~ 665 (783)
+..++..|||++ +++++++++++.++.+.|++++...+||+|++ .+++|+|+++|+++--....|+
T Consensus 242 ~~~LtcadIMSr--dVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~-----------~rl~GiVt~~dl~~~a~~~p~q- 307 (382)
T COG3448 242 MGELTCADIMSR--DVVTVSTDTSIDHARKLLQEHRIKALPVLDEH-----------RRLVGIVTQRDLLKHARPSPFQ- 307 (382)
T ss_pred hccccHHHhcCc--cceecCCcCChHHHHHHHHHcCcccccccccc-----------cceeeeeeHHHHhhccCcchHH-
Confidence 457899999999 99999999999999999999999999999997 7999999999996521110000
Q ss_pred hhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeecc
Q 003966 666 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 745 (783)
Q Consensus 666 ~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~ 745 (783)
++. ++. .-.++.+|++...|+.+|++..+..-+|.+.|++++||+|+
T Consensus 308 ------------rlr---~~~-----------------~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~- 354 (382)
T COG3448 308 ------------RLR---FLR-----------------PPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDA- 354 (382)
T ss_pred ------------Hhh---ccC-----------------CCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcC-
Confidence 000 111 12478899999999999999999999999999999999998
Q ss_pred ccCCCCcEEEEEehhhchhhHhhhhC
Q 003966 746 EAAGVSPVVGILTRQDLRAFNILTAF 771 (783)
Q Consensus 746 ~~~~~~~vvGIITr~DLl~~~~~~~~ 771 (783)
+|+++||||..|++.+..++..
T Consensus 355 ----~g~lvGIvsQtDliaal~r~~~ 376 (382)
T COG3448 355 ----AGKLVGIVSQTDLIAALYRNWS 376 (382)
T ss_pred ----CCcEEEEeeHHHHHHHHHHHHH
Confidence 8999999999999998776554
No 22
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.57 E-value=1.3e-14 Score=145.27 Aligned_cols=123 Identities=20% Similarity=0.281 Sum_probs=110.7
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhh
Q 003966 586 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 665 (783)
Q Consensus 586 l~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~ 665 (783)
.-+.+++++|++ ++++++++++++++.+.|-+++.++.||+|+ ++++|+++.+|+..++.+..
T Consensus 169 iPk~~V~~~~s~--~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~------------dk~vGiit~~dI~~aia~g~--- 231 (294)
T COG2524 169 IPKEKVKNLMSK--KLITVRPDDTLREAAKLFYEKGIRGAPVVDD------------DKIVGIITLSDIAKAIANGN--- 231 (294)
T ss_pred cCcchhhhhccC--CceEecCCccHHHHHHHHHHcCccCCceecC------------CceEEEEEHHHHHHHHHcCC---
Confidence 346789999999 9999999999999999999999999999998 59999999999988765432
Q ss_pred hhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeecc
Q 003966 666 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 745 (783)
Q Consensus 666 ~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~ 745 (783)
....++++|.++++|+++|+.+.+|+++|...+..+|.|+|.
T Consensus 232 -------------------------------------~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds- 273 (294)
T COG2524 232 -------------------------------------LDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDS- 273 (294)
T ss_pred -------------------------------------ccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEcc-
Confidence 123578899999999999999999999999999999999998
Q ss_pred ccCCCCcEEEEEehhhchhhHh
Q 003966 746 EAAGVSPVVGILTRQDLRAFNI 767 (783)
Q Consensus 746 ~~~~~~~vvGIITr~DLl~~~~ 767 (783)
+|+.+|||||+|+++...
T Consensus 274 ----~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 274 ----NGKPVGIITRTDILTRIA 291 (294)
T ss_pred ----CCcEEEEEehHHHHHHhh
Confidence 899999999999998653
No 23
>PRK05277 chloride channel protein; Provisional
Probab=99.56 E-value=2.9e-14 Score=161.95 Aligned_cols=188 Identities=16% Similarity=0.184 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHH
Q 003966 88 KWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEI 167 (783)
Q Consensus 88 ~w~~~~liGv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev 167 (783)
.+...+++|+++|+++.+|+..+..++++..+. ..+ +...+ .....+.+++.+.+ .++.|+..|+|.+.+
T Consensus 216 ~l~~~i~lGi~~G~~g~lf~~~~~~~~~~~~~~-----~~~-~~~~~---~~~~~i~gl~~g~l-~~~~p~~~g~G~~~i 285 (438)
T PRK05277 216 TLWLFLLLGIIFGIFGVLFNKLLLRTQDLFDRL-----HGG-NKKRW---VLMGGAVGGLCGLL-GLLAPAAVGGGFNLI 285 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccc-ccHHH---HHHHHHHHHHHHHH-HHHhhhhcCChHHHH
Confidence 345688999999999999999988877653321 111 11111 12233334444443 467799999999999
Q ss_pred HHHHhCCCCCCcchhHHHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHhhcCCCCcccchhhhhhccCCcchhhhHH
Q 003966 168 KAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLI 247 (783)
Q Consensus 168 ~~~lng~~~~~~l~~~tl~~K~~~~~~sv~sG~s~G~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv 247 (783)
+..+++- .+-..-+..++.|++.+.+++++|.++|.++|++++||++|..++.. .+ .+++. ++.+...++
T Consensus 286 ~~~~~~~-~~~~~l~~~~~~K~i~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~----~~---~~~p~--~~~~~~~~a 355 (438)
T PRK05277 286 PIALAGN-FSIGMLLFIFVARFITTLLCFGSGAPGGIFAPMLALGTLLGLAFGMV----AA---ALFPQ--YHIEPGTFA 355 (438)
T ss_pred HHHHcCC-chHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH----HH---HHcCc--ccccHHHHH
Confidence 9888762 21112244679999999999999999999999999999999998861 11 12221 345677899
Q ss_pred HhhhhhhhhhhccCcccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHH
Q 003966 248 TCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRA 298 (783)
Q Consensus 248 ~~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~ 298 (783)
.+|+||++|+++|||+++++|++|.+.+ ...+.+.++++.+|..+.+.
T Consensus 356 ~~G~aA~la~~~~aPlt~~v~~~Eltg~---~~~l~p~lia~~~A~~v~~~ 403 (438)
T PRK05277 356 IAGMGALFAATVRAPLTGIVLVLEMTDN---YQLILPLIITCLGATLLAQF 403 (438)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhCC---hhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999997753 24455666666666666553
No 24
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.53 E-value=6e-14 Score=153.27 Aligned_cols=147 Identities=14% Similarity=0.102 Sum_probs=124.6
Q ss_pred CccHHHHHHHhcCCCC---CCCCCCCccc---ccccccccccCCC--eeEEcCcccHHHHHHHHhcCCCCeeeeecCCCC
Q 003966 562 NPSIYEIILELKGLPF---LDAHPEPWMR---TLTVGELIDAKPP--VITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVV 633 (783)
Q Consensus 562 ~~~iy~~~l~~kg~p~---l~~~~~~~l~---~l~v~dvM~~~~~--vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~ 633 (783)
..++|...+..+|... ...++...++ ..+|+|+|.+ + ++++++++++.++.+.|.+++...+||+|++
T Consensus 164 ~dsL~~~~l~~~g~~~~~~~~~~~~~~l~~~~~~~V~~im~~--~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~-- 239 (321)
T PRK11543 164 GDALAMAVMQARGFNEEDFARSHPAGALGARLLNKVHHLMRR--DDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQ-- 239 (321)
T ss_pred HHHHHHHHHHHcCCCHHHhccCCCCCHHHHHHHhHHHHHhcc--CCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCC--
Confidence 4478888888888766 6677778888 8999999999 6 9999999999999999998888999999986
Q ss_pred CCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccC
Q 003966 634 PPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT 713 (783)
Q Consensus 634 ~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~ 713 (783)
++++|+|+.+|+.+.+..... ....+.++|++
T Consensus 240 ---------g~~iG~vt~~dl~~~~~~~~~---------------------------------------~~~~v~~im~~ 271 (321)
T PRK11543 240 ---------QQVQGVFTDGDLRRWLVGGGA---------------------------------------LTTPVNEAMTR 271 (321)
T ss_pred ---------CcEEEEecHHHHHHHHhCCCC---------------------------------------cCCcHHHhcCC
Confidence 899999999999765432110 00135577888
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhh
Q 003966 714 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 765 (783)
Q Consensus 714 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~ 765 (783)
++.++.+++++.++++.|.+.+.+++||||+ +++++|+||++|++++
T Consensus 272 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-----~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 272 GGTTLQAQSRAIDAKEILMKRKITAAPVVDE-----NGKLTGAINLQDFYQA 318 (321)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-----CCeEEEEEEHHHHHhc
Confidence 9999999999999999999999999999997 6899999999999874
No 25
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.50 E-value=1.6e-13 Score=150.20 Aligned_cols=150 Identities=13% Similarity=0.178 Sum_probs=122.3
Q ss_pred CccHHHHHHHhcCCCC---CCCCCCCcc---cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCC
Q 003966 562 NPSIYEIILELKGLPF---LDAHPEPWM---RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPP 635 (783)
Q Consensus 562 ~~~iy~~~l~~kg~p~---l~~~~~~~l---~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~ 635 (783)
..++|...+..+|.-. ...++...+ ..++++|+|.+..+++++++++++.++.+.|.+++++.+||+|++
T Consensus 169 ~dsL~~~~l~~~g~~~~~~~~~~~~~~l~~~~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~---- 244 (326)
T PRK10892 169 GDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDN---- 244 (326)
T ss_pred HHHHHHHHHHHhCCCHHHHHhcCCCchhcccccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCC----
Confidence 4578888888888766 666666667 889999999852368899999999999999988888778888876
Q ss_pred CCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCC
Q 003966 636 SGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTP 715 (783)
Q Consensus 636 ~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p 715 (783)
++++|+|+.+|+.+.+.+... . ...+++++|.+++
T Consensus 245 -------g~lvGivt~~Dl~~~~~~~~~--------------------~------------------~~~~v~~im~~~~ 279 (326)
T PRK10892 245 -------MKIEGIFTDGDLRRVFDMGID--------------------L------------------RQASIADVMTPGG 279 (326)
T ss_pred -------CcEEEEEecHHHHHHHhcCCC--------------------c------------------ccCCHHHhcCCCC
Confidence 899999999999764432100 0 0124667888999
Q ss_pred eeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhH
Q 003966 716 YTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 766 (783)
Q Consensus 716 ~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~ 766 (783)
.++.+++++.+++++|.+.+.+++||+| +++++|+||++|+++..
T Consensus 280 ~~v~~~~~l~~a~~~m~~~~~~~lpVv~------~~~lvGiit~~dil~~~ 324 (326)
T PRK10892 280 IRVRPGILAVDALNLMQSRHITSVLVAD------GDHLLGVLHMHDLLRAG 324 (326)
T ss_pred EEECCCCCHHHHHHHHHHCCCcEEEEee------CCEEEEEEEhHHhHhcc
Confidence 9999999999999999999999999997 47899999999999853
No 26
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=99.49 E-value=1.4e-13 Score=154.04 Aligned_cols=163 Identities=23% Similarity=0.270 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHH
Q 003966 87 LKWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPE 166 (783)
Q Consensus 87 ~~w~~~~liGv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipe 166 (783)
..+...+++|+++|+++.+|+...+++++++.+. . . ++.+ ..++.+++.+. +.++.|+..|+|.++
T Consensus 204 ~~~~~~il~Gv~~g~~g~~f~~~~~~~~~~~~~~-----~---~--~~~~---~~~i~gll~~~-~~~~~p~~~g~G~~~ 269 (383)
T cd00400 204 LELPLYLLLGLLAGLVGVLFVRLLYKIERLFRRL-----P---I--PPWL---RPALGGLLLGL-LGLFLPQVLGSGYGA 269 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----C---C--cHHH---HHHHHHHHHHH-HHHHHHHHHcCcHHH
Confidence 3456789999999999999999998887654321 0 1 1111 22333444443 456679999999999
Q ss_pred HHHHHhCCCCCCcchhHHHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHhhcCCCCcccchhhhhhc-cC-Ccchhh
Q 003966 167 IKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRY-FN-NDRDRR 244 (783)
Q Consensus 167 v~~~lng~~~~~~l~~~tl~~K~~~~~~sv~sG~s~G~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~-f~-~~~~~r 244 (783)
+...+++. .+-..-...++.|++.+.+++++|.+.|.|+|++.+||++|..+++ +++. +. ++.+.+
T Consensus 270 ~~~~~~~~-~~~~~l~~~~~~K~~~t~l~~~sG~~GG~~~P~l~iGa~~G~~~~~-----------~~~~~~~~~~~~~~ 337 (383)
T cd00400 270 ILLALAGE-LSLLLLLLLLLLKLLATALTLGSGFPGGVFAPSLFIGAALGAAFGL-----------LLPALFPGLVASPG 337 (383)
T ss_pred HHHHHcCC-hhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHH-----------HHHHhCCcccCChH
Confidence 88877752 1111224578999999999999999999999999999999999997 3321 11 345788
Q ss_pred hHHHhhhhhhhhhhccCcccceeeeeeecch
Q 003966 245 DLITCGSSSGVCAAFRAPVGGVLFSLEEVAT 275 (783)
Q Consensus 245 ~lv~~GaAAGvaaaF~APigGvLFalE~~~~ 275 (783)
.++.||+||++++++|+|+++++|++|++.+
T Consensus 338 ~~~~~G~aa~la~~~~aPlt~~vl~~Eltg~ 368 (383)
T cd00400 338 AYALVGMAALLAAVLRAPLTAILLVLELTGD 368 (383)
T ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHHhCC
Confidence 9999999999999999999999999998763
No 27
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.46 E-value=6.3e-14 Score=145.69 Aligned_cols=150 Identities=21% Similarity=0.272 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHHhhcCccHHHHHHHhcCCCCCCCCCCCcccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCC
Q 003966 544 LPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHN 623 (783)
Q Consensus 544 l~pimia~~ia~~v~~~~~~~iy~~~l~~kg~p~l~~~~~~~l~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~ 623 (783)
-+|++-+.-=.+.|+..+|+.+|+.+++. +-++|+|+|.+..+..++++.+++.+..+.-++++|+
T Consensus 157 ~lPvlstsYDTFTVAtmIN~Al~n~lIKk--------------dI~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~s 222 (432)
T COG4109 157 GLPVLSTSYDTFTVATMINKALSNQLIKK--------------DIITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHS 222 (432)
T ss_pred CCceEEecccceeHHHHHHHHHHHhhhhh--------------heeeHHHhccccccceeccccccHHHHHHHHHHcCCC
Confidence 34555555555566666678888888864 3478999999766889999999999999999999999
Q ss_pred eeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhh
Q 003966 624 GFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEM 703 (783)
Q Consensus 624 ~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~ 703 (783)
.|||+|+. .+++|+|+.+|+.. ++ .
T Consensus 223 RfPVvn~~-----------~kvvGvVt~rDv~~---~~-----------------------------------------~ 247 (432)
T COG4109 223 RFPVVNRS-----------MKVVGVVTMRDVLD---KK-----------------------------------------P 247 (432)
T ss_pred ccceeccc-----------ceEEEEEEehhhhc---CC-----------------------------------------C
Confidence 99999987 89999999999843 10 0
Q ss_pred ccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHh
Q 003966 704 YIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 767 (783)
Q Consensus 704 ~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~ 767 (783)
...+..+|+++|++|.+.+|++.+.++|.-.|+..+||+|+ +++++|||||+|+++...
T Consensus 248 ~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~-----n~~llGiitR~dvlk~lq 306 (432)
T COG4109 248 STTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDS-----NNTLLGIITRQDVLKSLQ 306 (432)
T ss_pred CccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcC-----CceEEEEEEHHHHHHHHH
Confidence 13456789999999999999999999999999999999998 899999999999998654
No 28
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.45 E-value=4e-13 Score=157.92 Aligned_cols=181 Identities=18% Similarity=0.177 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHH
Q 003966 89 WSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEIK 168 (783)
Q Consensus 89 w~~~~liGv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~ 168 (783)
+.+.+++|+++|+++.+|+..+.+.+++.... .. +.++.. .+.+++.+.+ .++.|+..|+|.+.++
T Consensus 239 ~~~~~~lGv~~G~~~~~f~~~~~~~~~~~~~~--------~~--~~~~~~---~~~gl~~g~l-~~~~p~~~g~G~~~i~ 304 (574)
T PRK01862 239 VLLFVALGVLCGAAAPQFLRLLDASKNQFKRL--------PV--PLPVRL---ALGGLLVGVI-SVWVPEVWGNGYSVVN 304 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------CC--chhHHH---HHHHHHHHHH-HHHHHHHhcCCHHHHH
Confidence 44679999999999999999888776532211 11 111111 2333444433 4567999999999998
Q ss_pred HHHhCCCCCCcchhHHHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHhhcCCCCcccchhhhhhc-cCCc-chhhhH
Q 003966 169 AYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRY-FNND-RDRRDL 246 (783)
Q Consensus 169 ~~lng~~~~~~l~~~tl~~K~~~~~~sv~sG~s~G~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~-f~~~-~~~r~l 246 (783)
..+++-. .-..-...++.|++.+++++++|.++|.++|++.+||++|+.+++ +++. +.+. .+.-.+
T Consensus 305 ~~~~~~~-~~~~l~~~~~~K~~~t~~t~g~G~~GG~f~P~l~iGa~~G~~~g~-----------~~~~~~~~~~~~~~~~ 372 (574)
T PRK01862 305 TILHAPW-TWQALVAVLVAKLIATAATAGSGAVGGVFTPTLFVGAVVGSLFGL-----------AMHALWPGHTSAPFAY 372 (574)
T ss_pred HHHcCCc-hHHHHHHHHHHHHHHHHHHHccCCCccchhhHHHHHHHHHHHHHH-----------HHHHhCCCcccchHHH
Confidence 8887621 111124456899999999999999999999999999999999997 3332 2121 222348
Q ss_pred HHhhhhhhhhhhccCcccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHH
Q 003966 247 ITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRA 298 (783)
Q Consensus 247 v~~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~ 298 (783)
+.+|+||.+|+++|||+++++|++|.+.+ ...+.+.+++++++.++.+.
T Consensus 373 a~vGmaa~~aa~~~aPlt~i~l~~Elt~~---~~~~~P~~ia~~~a~~v~~~ 421 (574)
T PRK01862 373 AMVGMGAFLAGATQAPLMAILMIFEMTLS---YQVVLPLMVSCVVAYFTARA 421 (574)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHhCC---HhHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999998754 34566677777776666653
No 29
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.42 E-value=1.1e-12 Score=147.50 Aligned_cols=182 Identities=20% Similarity=0.265 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHH
Q 003966 88 KWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEI 167 (783)
Q Consensus 88 ~w~~~~liGv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev 167 (783)
.+.+.+++|+++|+++.+|+..+.+.+++.... +. .+++. ..+.+++.+.+. ++.|+..|.|.+.+
T Consensus 220 ~l~~~i~lGii~Gl~g~~f~~~~~~~~~~~~~~--------~~-~~~~~----~~lggli~g~l~-~~~p~~~G~G~~~i 285 (418)
T PRK01610 220 DYALIISTGLLAGLCGPLLLTLMNASHRGFVSL--------KL-APPWQ----LALGGLIVGLLS-LFTPAVWGNGYSVV 285 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--------cc-chhHH----HHHHHHHHHHHH-HHhhHHhCCcHHHH
Confidence 345789999999999999999887766543211 11 11111 233444545444 44599999999988
Q ss_pred HHHHhCCCCCCcchhHHHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHhhcCCCCcccchhhhhhc-cCCcch-hhh
Q 003966 168 KAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRY-FNNDRD-RRD 245 (783)
Q Consensus 168 ~~~lng~~~~~~l~~~tl~~K~~~~~~sv~sG~s~G~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~-f~~~~~-~r~ 245 (783)
+..+++.. .-.+-.-.++.|++.+.+++++|.+.|.+.|++.+||++|+.+++ ++.. +.+..+ .-.
T Consensus 286 ~~~~~~~~-~~~~l~~l~l~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~-----------~~~~~~~~~~~~~~~ 353 (418)
T PRK01610 286 QSFLTAPP-LLMLIAGIFLCKLLAVLASSGSGAPGGVFTPTLFVGLAIGMLYGR-----------SLGLWLPDGEEITLL 353 (418)
T ss_pred HHHHcCCh-hHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHH-----------HHHHhCCCcccchHH
Confidence 88877521 111112235889999999999999999999999999999999997 3322 222222 334
Q ss_pred HHHhhhhhhhhhhccCcccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHH
Q 003966 246 LITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRA 298 (783)
Q Consensus 246 lv~~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~ 298 (783)
+..+|+||.+|+++|||++++++++|.+.++ ..+.+.++++.+++.+.+.
T Consensus 354 ~a~vGmaA~laa~~~aPltaivl~~Eltg~~---~~~~p~~ia~~ia~~vs~~ 403 (418)
T PRK01610 354 LGLTGMATLLAATTHAPIMSTLMICEMTGEY---QLLPGLLIACVIASVISRT 403 (418)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHhCCH---hHHHHHHHHHHHHHHHHHH
Confidence 6679999999999999999999999997642 3355566666666666654
No 30
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=3.4e-12 Score=118.14 Aligned_cols=118 Identities=15% Similarity=0.177 Sum_probs=93.9
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
+++++++++++.++.+.|.+++.+.+||+|++ ++++|+++++|++..+.++...... .
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~-----------~~~~Giv~~~dl~~~~~~~~~~~~~-----------~ 59 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDEN-----------GKVVDVYSRFDVINLAKEGAYNNLD-----------L 59 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCC-----------CeEEEEEeHHHHHHHHhcCcccccc-----------C
Confidence 67899999999999999999999999999876 8999999999998765432210000 0
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
+..+ .+..++.|..++.++++++++.+++++|.+.+.+++||+|+ +++++|+||+
T Consensus 60 ~~~~--------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-----~~~~~Givt~ 114 (120)
T cd04641 60 TVGE--------------------ALERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDE-----NKRVEGIISL 114 (120)
T ss_pred CHHH--------------------HHhhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECC-----CCCEEEEEEH
Confidence 0000 01123456667789999999999999999999999999997 6899999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|+++
T Consensus 115 ~di~~ 119 (120)
T cd04641 115 SDILQ 119 (120)
T ss_pred HHhhc
Confidence 99976
No 31
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.40 E-value=1.8e-12 Score=145.46 Aligned_cols=130 Identities=18% Similarity=0.236 Sum_probs=110.9
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhh
Q 003966 586 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 665 (783)
Q Consensus 586 l~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~ 665 (783)
+++.+|+|+|+++.++++++.++++.++.+.+.+++|+.+||++++ .++++|+|+.+|++..+.++
T Consensus 188 l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~----------~d~ivGiv~~kDll~~~~~~---- 253 (408)
T TIGR03520 188 FGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKET----------IDNITGVLYIKDLLPHLNKK---- 253 (408)
T ss_pred cCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCC----------CCceEEEEEHHHHHhHhccC----
Confidence 5788999999988789999999999999999999999999999874 26899999999996532210
Q ss_pred hhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeecc
Q 003966 666 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 745 (783)
Q Consensus 666 ~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~ 745 (783)
..+++++| ++|++|++++++.++++.|++.+.+..+|+|+
T Consensus 254 --------------------------------------~~~l~~~~-~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE- 293 (408)
T TIGR03520 254 --------------------------------------NFDWQSLL-REPYFVPENKKLDDLLRDFQEKKNHLAIVVDE- 293 (408)
T ss_pred --------------------------------------CCCHHHHc-CCCeEeCCCCcHHHHHHHHHhcCceEEEEEcC-
Confidence 02344555 46889999999999999999999999999998
Q ss_pred ccCCCCcEEEEEehhhchhhHhhhhCCc
Q 003966 746 EAAGVSPVVGILTRQDLRAFNILTAFPH 773 (783)
Q Consensus 746 ~~~~~~~vvGIITr~DLl~~~~~~~~~~ 773 (783)
.|.++||||.+|++++...+..++
T Consensus 294 ----~G~~~GiVT~eDileeivgei~de 317 (408)
T TIGR03520 294 ----YGGTSGLVTLEDIIEEIVGDISDE 317 (408)
T ss_pred ----CCCEEEEEEHHHHHHHHhCCCCCc
Confidence 788999999999999988766544
No 32
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.38 E-value=6.1e-12 Score=140.23 Aligned_cols=152 Identities=20% Similarity=0.312 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHh-ccCCCCCCHHHH
Q 003966 89 WSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCF-APTAAGPGIPEI 167 (783)
Q Consensus 89 w~~~~liGv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~-~p~a~GsGipev 167 (783)
+.+.+++|+++|+++.+|+..+.++++++.+.. .+ .++ .+++.+++.+.+.... .|...|.|.+.+
T Consensus 200 l~~~i~~Gi~~gl~g~~f~~~~~~~~~~~~~~~-----~~----~~~----~~~iggl~~g~~~~~~~~~~~~G~g~~~i 266 (378)
T cd03682 200 FVKVILAGIIFGLAGRLFAELLHFLKKLLKKRI-----KN----PYL----RPFVGGLLIILLVYLLGSRRYLGLGTPLI 266 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----CC----cHH----HHHHHHHHHHHHHHHhcCCccccCCHHHH
Confidence 457899999999999999999988877644220 11 121 2233444444444332 345679998888
Q ss_pred HH-HHhCCCCCCcchhHHHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHhhcCCCCcccchhhhhhccCCcchhhhH
Q 003966 168 KA-YLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDL 246 (783)
Q Consensus 168 ~~-~lng~~~~~~l~~~tl~~K~~~~~~sv~sG~s~G~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~l 246 (783)
+. ..++ ..+...++.|++.+.+++++|.+.|.+.|++.+||++|+.+++ +++. +.-.+
T Consensus 267 ~~~~~~~-----~~~~~~~l~K~~~t~~s~g~G~~GG~f~P~l~iGa~~G~~~~~-----------~~~~-----~~~~~ 325 (378)
T cd03682 267 EDSFFGG-----TVYPYDWLLKLIFTVITLGAGFKGGEVTPLFFIGATLGNALAP-----------ILGL-----PVSLL 325 (378)
T ss_pred HHHHhcC-----CchHHHHHHHHHHHHHHHhcCCCCceechHHHHHHHHHHHHHH-----------HHCC-----CHHHH
Confidence 76 4433 3446778999999999999999999999999999999999997 4332 23478
Q ss_pred HHhhhhhhhhhhccCcccceeeeeeecc
Q 003966 247 ITCGSSSGVCAAFRAPVGGVLFSLEEVA 274 (783)
Q Consensus 247 v~~GaAAGvaaaF~APigGvLFalE~~~ 274 (783)
+.||+||.+++++|||+++++|++|.+.
T Consensus 326 ~~~Gmaa~laa~~raPlt~ivl~~Eltg 353 (378)
T cd03682 326 AALGFVAVFAGATNTPLACIIMGIELFG 353 (378)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhC
Confidence 9999999999999999999999999986
No 33
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.35 E-value=7.7e-12 Score=114.70 Aligned_cols=112 Identities=13% Similarity=0.141 Sum_probs=93.5
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
.+.++++++++.++.+.|.+.+++.+||+|++ ++++|+|+.+|+.+.+.+....
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-----------g~~~G~vt~~dl~~~~~~~~~~--------------- 55 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPH-----------GKLAGVLTKTDVVRQMGRCGGP--------------- 55 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECCC-----------CCEEEEEehHHHHHHHhhcCCC---------------
Confidence 35688999999999999999999999999986 8999999999997654321000
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
.....+.++|++++.++.+++++.++++.|.+.+.+++||+|+ +++++|+||+
T Consensus 56 ----------------------~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-----~~~~~Gvi~~ 108 (114)
T cd04619 56 ----------------------GCTAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDE-----NARPLGVLNA 108 (114)
T ss_pred ----------------------cccCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECC-----CCcEEEEEEh
Confidence 0012355677888999999999999999999999999999997 7899999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|+++
T Consensus 109 ~dl~~ 113 (114)
T cd04619 109 RDALK 113 (114)
T ss_pred Hhhcc
Confidence 99975
No 34
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.35 E-value=4.6e-12 Score=135.82 Aligned_cols=132 Identities=18% Similarity=0.329 Sum_probs=109.1
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhh
Q 003966 586 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 665 (783)
Q Consensus 586 l~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~ 665 (783)
++..+|+|+|+++.++++++.++++.++.+.+.+++|+.|||++++ .++++|+|+.+|++..+....
T Consensus 64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~----------~d~iiGiv~~kDll~~~~~~~--- 130 (292)
T PRK15094 64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED----------KDHIEGILMAKDLLPFMRSDA--- 130 (292)
T ss_pred cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCC----------CCcEEEEEEHHHHHhHhhccC---
Confidence 4677999999986679999999999999999999999999999863 168999999999975432100
Q ss_pred hhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeecc
Q 003966 666 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 745 (783)
Q Consensus 666 ~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~ 745 (783)
. ..++.++|. ++++|++++++.++++.|++.+.+.+||+|+
T Consensus 131 -~------------------------------------~~~l~~l~r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe- 171 (292)
T PRK15094 131 -E------------------------------------AFSMDKVLR-QAVVVPESKRVDRMLKEFRSQRYHMAIVIDE- 171 (292)
T ss_pred -C------------------------------------cCCHHHHcC-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeC-
Confidence 0 012345554 4668999999999999999999999999998
Q ss_pred ccCCCCcEEEEEehhhchhhHhhhhCCc
Q 003966 746 EAAGVSPVVGILTRQDLRAFNILTAFPH 773 (783)
Q Consensus 746 ~~~~~~~vvGIITr~DLl~~~~~~~~~~ 773 (783)
.|.++|+||++|++++...+...+
T Consensus 172 ----~G~viGiVTleDIle~ivGei~de 195 (292)
T PRK15094 172 ----FGGVSGLVTIEDILELIVGEIEDE 195 (292)
T ss_pred ----CCCEEEEeEHHHHHHHHhCCCccc
Confidence 788999999999999988766544
No 35
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=99.35 E-value=1.5e-11 Score=138.46 Aligned_cols=100 Identities=18% Similarity=0.252 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHHhhccCCcchHHHHHHHhhhhhhhhhchhHHHHHHHHH-HhC
Q 003966 461 FFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLE-LTN 539 (783)
Q Consensus 461 ~~~~k~~lt~~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~alvGaaa~l~g~~r~pis~~vi~~E-lTg 539 (783)
.++.|++.+++|+|+|.|+|.+.|++.+||++|..+++.++.. ..+...+..+||||.++++.++|++.+++.+| +++
T Consensus 85 ~~~~k~~~~~l~~gsG~s~G~EgP~v~iga~ig~~~~~~~~~~-~~~~~~l~~~g~aag~aa~f~aPl~g~lf~~E~~~~ 163 (402)
T cd01031 85 VLPVKFVGGVLALGSGLSLGREGPSVQIGAAIGQGVSKWFKTS-PEERRQLIAAGAAAGLAAAFNAPLAGVLFVLEELRH 163 (402)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHhHHHHhCCccHHHHHHHHHHHh
Confidence 4568999999999999999999999999999999999987532 34577899999999999999999999999999 677
Q ss_pred Cch--hHHHHHHHHHHHHHHHhhc
Q 003966 540 NLL--LLPITMIVLLIAKTVGDSF 561 (783)
Q Consensus 540 ~~~--~l~pimia~~ia~~v~~~~ 561 (783)
+++ .+.|+++++++|..+++.+
T Consensus 164 ~~~~~~~~~~~~a~~~a~~v~~~~ 187 (402)
T cd01031 164 SFSPLALLTALVASIAADFVSRLF 187 (402)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHH
Confidence 765 6899999999999999865
No 36
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.35 E-value=6.1e-12 Score=117.32 Aligned_cols=121 Identities=23% Similarity=0.365 Sum_probs=102.0
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhh
Q 003966 587 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQE 666 (783)
Q Consensus 587 ~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~ 666 (783)
..++++++|++ |++.+++++++.+++++|++.+++.+||+++ ++++|-|+.+++.+.+.+.. +
T Consensus 63 ~~ita~~iM~s--pvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~------------~k~VGsItE~~iv~~~le~~--e- 125 (187)
T COG3620 63 TRITAKTIMHS--PVVSVSPDDSISDVVNLMRDKGISQLPVIEE------------DKVVGSITENDIVRALLEGM--E- 125 (187)
T ss_pred ceEeHhhhccC--CeeEECchhhHHHHHHHHHHcCCccCceeeC------------CeeeeeecHHHHHHHHhccc--c-
Confidence 56899999999 9999999999999999999999999999988 69999999999987654321 0
Q ss_pred hccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccc
Q 003966 667 KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE 746 (783)
Q Consensus 667 ~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~ 746 (783)
++ ....++++|..+.++|++++++.-+.+++..+.. +.|++
T Consensus 126 ----------------~i------------------~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~~A--VlV~e--- 166 (187)
T COG3620 126 ----------------SI------------------RSLRVREVMGEPFPTVSPDESLNVISQLLEEHPA--VLVVE--- 166 (187)
T ss_pred ----------------ch------------------hhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhCCe--EEEEe---
Confidence 00 1234678888888999999999999999987654 66664
Q ss_pred cCCCCcEEEEEehhhchhhH
Q 003966 747 AAGVSPVVGILTRQDLRAFN 766 (783)
Q Consensus 747 ~~~~~~vvGIITr~DLl~~~ 766 (783)
+|+++||||++|+++..
T Consensus 167 ---~G~~vGIITk~DI~k~~ 183 (187)
T COG3620 167 ---NGKVVGIITKADIMKLL 183 (187)
T ss_pred ---CCceEEEEeHHHHHHHH
Confidence 68999999999999854
No 37
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.34 E-value=8.5e-12 Score=113.91 Aligned_cols=109 Identities=14% Similarity=0.195 Sum_probs=91.0
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.++++++++.++.+.|.+++++.+||+|++ ++++|+|+..|+.....+.+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~dl~~~~~~~~----------------- 53 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEE-----------NKVLGQVTLSDLLEIGPNDY----------------- 53 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CCEEEEEEHHHHHhhccccc-----------------
Confidence 45788999999999999998889999999976 89999999999965211000
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
....+.++|..++.++.+++++.+++++|.+.+.+++||+|+ +|+++|+||+
T Consensus 54 -----------------------~~~~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~-----~~~~~Giit~ 105 (111)
T cd04603 54 -----------------------ETLKVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDK-----EGKLVGTIYE 105 (111)
T ss_pred -----------------------cccChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcC-----CCeEEEEEEh
Confidence 001245667788889999999999999999999999999997 7899999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|+++
T Consensus 106 ~di~~ 110 (111)
T cd04603 106 RELLR 110 (111)
T ss_pred HHhhc
Confidence 99975
No 38
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.33 E-value=1.1e-11 Score=111.02 Aligned_cols=95 Identities=16% Similarity=0.221 Sum_probs=83.9
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
.++++++++++.++.+.|.+.+++++||+|++ +++++|+|+++|+.+.+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~----------~~~~~Givt~~Dl~~~~--------------------- 50 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSR----------KQQFVGMLTITDFILIL--------------------- 50 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCC----------CCEEEEEEEHHHHhhhe---------------------
Confidence 47889999999999999999999999999862 16899999999985311
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCC-CcEEEEEe
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV-SPVVGILT 758 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~-~~vvGIIT 758 (783)
. +.++.+++++.++.++|.+.+.+++||+|+ + |+++|+||
T Consensus 51 --------------------------------~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-----~~~~~~giit 91 (98)
T cd04618 51 --------------------------------R--LVSIHPERSLFDAALLLLKNKIHRLPVIDP-----STGTGLYILT 91 (98)
T ss_pred --------------------------------e--eEEeCCCCcHHHHHHHHHHCCCCEeeEEEC-----CCCCceEEee
Confidence 0 568999999999999999999999999997 5 89999999
Q ss_pred hhhchh
Q 003966 759 RQDLRA 764 (783)
Q Consensus 759 r~DLl~ 764 (783)
++|++.
T Consensus 92 ~~d~~~ 97 (98)
T cd04618 92 SRRILK 97 (98)
T ss_pred hhhhhc
Confidence 999975
No 39
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.32 E-value=5.3e-12 Score=143.24 Aligned_cols=144 Identities=19% Similarity=0.221 Sum_probs=116.8
Q ss_pred ccHHHHHHHhcCCCCCCCCC-----CCcccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCC
Q 003966 563 PSIYEIILELKGLPFLDAHP-----EPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSG 637 (783)
Q Consensus 563 ~~iy~~~l~~kg~p~l~~~~-----~~~l~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~ 637 (783)
..++..+.+..|+-+++.+- ...++.+++.++|.+ +++++++++++.++.+.|.+++++.+||+|++
T Consensus 58 ~~MAiaLAr~GGiGvih~nl~~~~q~~~l~~VKv~~iMi~--~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~------ 129 (479)
T PRK07807 58 RRMAETVARRGGLVVLPQDIPIDVVAEVVAWVKSRDLVFD--TPVTLSPDDTVGDALALLPKRAHGAVVVVDEE------ 129 (479)
T ss_pred HHHHHHHHHCCCceEeeCCCCHHHHHHHHhhccccccccc--CCeEECCCCCHHHHHHHHHhcCCceEEEECCC------
Confidence 34555555555554443322 234678899999999 99999999999999999999999999999986
Q ss_pred CCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCee
Q 003966 638 LANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYT 717 (783)
Q Consensus 638 ~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~t 717 (783)
++++|+|+.+|+... . . ...++++|++++.+
T Consensus 130 -----gklvGIVT~rDL~~~-------~-~------------------------------------~~~V~diMt~~~it 160 (479)
T PRK07807 130 -----GRPVGVVTEADCAGV-------D-R------------------------------------FTQVRDVMSTDLVT 160 (479)
T ss_pred -----CeEEEEEeHHHHhcC-------c-c------------------------------------CCCHHHhccCCceE
Confidence 899999999998321 0 0 02356788899999
Q ss_pred ecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHhh
Q 003966 718 VIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 768 (783)
Q Consensus 718 V~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~~ 768 (783)
+++++++.+++++|.+.+.+++||+|+ +++++|+||++||++....
T Consensus 161 V~~d~sL~eAl~lM~~~~i~~LPVVD~-----~g~lvGIIT~~DIl~~~~~ 206 (479)
T PRK07807 161 LPAGTDPREAFDLLEAARVKLAPVVDA-----DGRLVGVLTRTGALRATIY 206 (479)
T ss_pred ECCCCcHHHHHHHHHhcCCCEEEEEcC-----CCeEEEEEEHHHHHHHhhC
Confidence 999999999999999999999999997 7899999999999986543
No 40
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.31 E-value=1.6e-11 Score=113.89 Aligned_cols=121 Identities=21% Similarity=0.267 Sum_probs=96.7
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.++++++++.++.+.|.+.+++.+||+|++ ++++|+|+.++++..+......... . ..
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~Giv~~~~l~~~~~~~~~~~~~------~---~~ 62 (124)
T cd04600 3 DVVTVTPDTSLEEAWALLRRHRIKALPVVDGD-----------RRLVGIVTQRDLLRHARPDGRRPLR------G---RL 62 (124)
T ss_pred CcEEeCCCCCHHHHHHHHHHcCCceeeEECCC-----------CCEEEEEEHHHHHhhhcccccchhh------h---hh
Confidence 77889999999999999999899999999876 8999999999997654321100000 0 00
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
+ ......++.++|++.++++++++++.+++++|.+.+.+.+||+|+ +|+++|+||+
T Consensus 63 ~-------------------~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~g~~~Gvit~ 118 (124)
T cd04600 63 R-------------------GRDKPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDE-----DRRLVGIVTQ 118 (124)
T ss_pred h-------------------cccccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcC-----CCCEEEEEEh
Confidence 0 001234567888899999999999999999999999999999997 7899999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|+++
T Consensus 119 ~di~~ 123 (124)
T cd04600 119 TDLIA 123 (124)
T ss_pred HHhhc
Confidence 99976
No 41
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.30 E-value=2.3e-11 Score=111.48 Aligned_cols=113 Identities=24% Similarity=0.278 Sum_probs=93.1
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.++++++++.++.+.|.+.+++.+||+|++ ++++|+++.+||+..+.+....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~dl~~~~~~~~~~--------------- 55 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRD-----------GGVVGIITLPDLLRALEADEAG--------------- 55 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCC-----------CCEEEEEEHHHHHHHHhccccc---------------
Confidence 66788999999999999999899999999986 8999999999997754321100
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
....++++|.+++.++.+++++.+++++|.+.+.+++||+|+ .+.++++|+||+
T Consensus 56 -----------------------~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~---~~~~~~~Gvit~ 109 (115)
T cd04593 56 -----------------------EPSAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDR---GNPGQVLGLLTR 109 (115)
T ss_pred -----------------------ccccHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeC---CCCCeEEEEEEh
Confidence 001245667788999999999999999999999999999987 112789999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|+++
T Consensus 110 ~di~~ 114 (115)
T cd04593 110 ENVLL 114 (115)
T ss_pred HHhhc
Confidence 99986
No 42
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.28 E-value=4.8e-11 Score=108.20 Aligned_cols=107 Identities=21% Similarity=0.315 Sum_probs=91.7
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.++++++++.++.+.+.+++++.+||+|++ ++++|+++.++++..+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~~l~~~~~~~~----------------- 54 (110)
T cd04605 3 PVVTISEDASIKEAAKLMIEENINHLPVVDED-----------GRLVGIVTSWDISKAVARDK----------------- 54 (110)
T ss_pred CCEEECCCCCHHHHHHHHHhCCCceEEEECCC-----------CcEEEEEeHHHHHHHHhhCc-----------------
Confidence 67789999999999999999999999999886 89999999999976432210
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
.++.++|++++.++.+++++.+++++|++.+.+.+||+++ +++++|+||+
T Consensus 55 -------------------------~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~G~v~~ 104 (110)
T cd04605 55 -------------------------KSVEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDA-----ENRVIGIITS 104 (110)
T ss_pred -------------------------cCHHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECC-----CCcEEEEEEH
Confidence 1234556678889999999999999999999999999997 7899999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|+.+
T Consensus 105 ~di~~ 109 (110)
T cd04605 105 EDISK 109 (110)
T ss_pred HHhhh
Confidence 99965
No 43
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.27 E-value=3.9e-11 Score=110.71 Aligned_cols=111 Identities=21% Similarity=0.199 Sum_probs=90.4
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.++++++++.++.+.|...+.+.+||+|++ ++++|+|+..+++.....+. +.
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-----------~~~~Givt~~dl~~~~~~~~---~~------------ 55 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDED-----------GDLVGVVSRKDLLKASIGGA---DL------------ 55 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----------CCEEEEEEHHHHHHHHHcCC---Cc------------
Confidence 67889999999999999988888999999986 78999999999976543211 00
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccC--CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCC---CcEE
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV---SPVV 754 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~---~~vv 754 (783)
....+.++|.+ .+.++++++++.+++++|.+.+.+++||+|+ + ++++
T Consensus 56 -----------------------~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~-----~~~~~~l~ 107 (118)
T cd04617 56 -----------------------QKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEK-----VDEGLEVI 107 (118)
T ss_pred -----------------------cCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeC-----CCccceEE
Confidence 00123445653 6779999999999999999999999999997 4 6899
Q ss_pred EEEehhhchh
Q 003966 755 GILTRQDLRA 764 (783)
Q Consensus 755 GIITr~DLl~ 764 (783)
|+||++|+++
T Consensus 108 Gvit~~~l~~ 117 (118)
T cd04617 108 GRITKTNITK 117 (118)
T ss_pred EEEEhhheec
Confidence 9999999975
No 44
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=3.4e-11 Score=109.42 Aligned_cols=109 Identities=27% Similarity=0.317 Sum_probs=92.2
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
+..+++++++++++.+.+.+.+++.+||+|++ ++++|+|+..++...+.... .
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~-----------~~~~G~v~~~~l~~~~~~~~----~------------ 54 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGD-----------GHLVGLLTRDDLIRALAEGG----P------------ 54 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCC-----------CcEEEEeeHHHHHHHHHhcC----C------------
Confidence 56788999999999999988889999999886 79999999999976543211 0
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
..++.++|+..+.++++++++.+++++|.+.+.+++||+|+ +++++|+||+
T Consensus 55 ------------------------~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~G~it~ 105 (111)
T cd04639 55 ------------------------DAPVRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDG-----SGRLVGLVTL 105 (111)
T ss_pred ------------------------CCcHHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcC-----CCCEEEEEEH
Confidence 01345667788889999999999999999999999999987 6899999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|+.+
T Consensus 106 ~dl~~ 110 (111)
T cd04639 106 ENVGE 110 (111)
T ss_pred HHhhc
Confidence 99976
No 45
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.27 E-value=2.4e-11 Score=114.96 Aligned_cols=132 Identities=21% Similarity=0.242 Sum_probs=96.3
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.++++++++.++.+.|.+++++.+||+|++ ++++|+|+++|+...+..+...... .+. ....
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~-----------~~~~Gvi~~~dl~~~~~~~~~~~~~----~~~-~~~~ 66 (135)
T cd04586 3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDD-----------GRLVGIVSEGDLLRRAELGTERRRA----RWL-DLLA 66 (135)
T ss_pred CCEEeCCCCCHHHHHHHHHHcCCCCceEECCC-----------CCEEEEeeHHHHHHHhcccCcchhh----hHH-HHhc
Confidence 67889999999999999999999999999986 8999999999997654332100000 000 0000
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
..++... ........++.++|+++++++.+++++.+++++|++.+.+++||+| +|+++|+||+
T Consensus 67 ~~~~~~~-----------~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd------~g~~~Gvit~ 129 (135)
T cd04586 67 GAEELAA-----------AFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR------GGRLVGIVSR 129 (135)
T ss_pred chHHHHH-----------HHHHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec------CCEEEEEEEh
Confidence 0000000 0000112457788989999999999999999999999999999998 4789999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|+++
T Consensus 130 ~di~~ 134 (135)
T cd04586 130 ADLLR 134 (135)
T ss_pred Hhhhc
Confidence 99876
No 46
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.27 E-value=2.8e-11 Score=109.62 Aligned_cols=105 Identities=24% Similarity=0.326 Sum_probs=90.9
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.+++++++++++.+.+.+++++.+||+|++ ++++|+|++.+++... .
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~~l~~~~------~-------------- 51 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEK-----------NKVVGIVTSKDVAGKD------P-------------- 51 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCC-----------CeEEEEecHHHHhccc------c--------------
Confidence 67889999999999999999888999999876 8999999999985310 0
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
..+++++|++.+.++++++++.++.++|.+.+.+.+||+|+ +|+++|++|+
T Consensus 52 ------------------------~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~G~it~ 102 (108)
T cd04596 52 ------------------------DTTIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDD-----NKKLLGIISR 102 (108)
T ss_pred ------------------------cccHHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcC-----CCCEEEEEEH
Confidence 01345667778889999999999999999999999999997 7899999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|+++
T Consensus 103 ~di~~ 107 (108)
T cd04596 103 QDVLK 107 (108)
T ss_pred HHhhc
Confidence 99975
No 47
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.25 E-value=4.5e-11 Score=110.52 Aligned_cols=120 Identities=24% Similarity=0.315 Sum_probs=96.2
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.++.+++++.++.+.|.+.+++.+||+|++ ++++|+++.++++..+.........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~G~v~~~~l~~~~~~~~~~~~~------------ 58 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNED-----------GKLVGLLTQRDLLRAALSSLSDNGE------------ 58 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCC-----------CCEEEEEEHHHHHHHhccccccccc------------
Confidence 56789999999999999999999999999886 8999999999997755321100000
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
+.. +.....++.++|++++.++.+++++.+++++|++.+.+.+||+|+ +++++|+||+
T Consensus 59 ---~~~--------------~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvit~ 116 (122)
T cd04803 59 ---ESL--------------TKERDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDD-----KGTLVGIITR 116 (122)
T ss_pred ---ccc--------------ccccCcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcC-----CCCEEEEEEH
Confidence 000 001234567788889999999999999999999999999999987 6899999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|+++
T Consensus 117 ~dl~~ 121 (122)
T cd04803 117 SDFLR 121 (122)
T ss_pred HHhhc
Confidence 99986
No 48
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.25 E-value=2e-11 Score=114.08 Aligned_cols=112 Identities=15% Similarity=0.207 Sum_probs=92.7
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.++++++++.++.+.|+++++..+||+|++ ++++|+|+.++++..+..+..
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~-----------~~~~Gii~~~dl~~~~~~~~~---------------- 55 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDES-----------GKILGMVTLGNLLSSLSSGKV---------------- 55 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----------CCEEEEEEHHHHHHHHHHhcc----------------
Confidence 67889999999999999999999999999886 799999999999765433210
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHH---------HcCCCEEEEeeccccCCC
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFR---------QVGLRHLLVVPKYEAAGV 750 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~---------~~glr~lpVVd~~~~~~~ 750 (783)
+....+.++|++++.++.+++++.++.+++. +.+.+++||+|+ +
T Consensus 56 ----------------------~~~~~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-----~ 108 (124)
T cd04608 56 ----------------------QPSDPVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEK-----Q 108 (124)
T ss_pred ----------------------CCCCcHHHHhhccceecCCCCCHHHHHhhcccCCceEEEecccccccccccc-----c
Confidence 0113467888899999999999999999653 236889999987 7
Q ss_pred CcEEEEEehhhchhh
Q 003966 751 SPVVGILTRQDLRAF 765 (783)
Q Consensus 751 ~~vvGIITr~DLl~~ 765 (783)
|+++||||++|++++
T Consensus 109 ~~~~Givt~~Dl~~~ 123 (124)
T cd04608 109 EKPIGIVTKIDLLSY 123 (124)
T ss_pred cceEEEEehhHhhhh
Confidence 899999999999875
No 49
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.25 E-value=2.4e-11 Score=138.64 Aligned_cols=149 Identities=15% Similarity=0.177 Sum_probs=110.5
Q ss_pred ccHHHHHHHhcCCCCCCCCCC--Cccc-ccccccccccC-CCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCC
Q 003966 563 PSIYEIILELKGLPFLDAHPE--PWMR-TLTVGELIDAK-PPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGL 638 (783)
Q Consensus 563 ~~iy~~~l~~kg~p~l~~~~~--~~l~-~l~v~dvM~~~-~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~ 638 (783)
..+--.+.+.+|+++.+...+ ...+ -.+++++|... .+..++++++++.++++.|.+++++.+||+|++
T Consensus 65 dalAiala~~gG~g~Ih~n~sie~qa~lV~kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~------- 137 (502)
T PRK07107 65 DNMAIALAREGGLSFIFGSQSIESEAAMVRRVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDG------- 137 (502)
T ss_pred HHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCC-------
Confidence 345555666777776543321 1111 23577777521 134689999999999999999999999999862
Q ss_pred CCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccC--CCe
Q 003966 639 ANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT--TPY 716 (783)
Q Consensus 639 ~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~--~p~ 716 (783)
.++++++|+|+..|+.... . . ....++++|++ +++
T Consensus 138 -~~~gkLvGIVT~~DLr~~~---~---~------------------------------------~~~~V~dIMt~~~~~i 174 (502)
T PRK07107 138 -TAHGKLLGIVTSRDYRISR---M---S------------------------------------LDTKVKDFMTPFEKLV 174 (502)
T ss_pred -CcCCEEEEEEEcHHhhccc---c---C------------------------------------CCCCHHHHhCCCCCeE
Confidence 1238999999999984210 0 0 01235677775 678
Q ss_pred eecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhH
Q 003966 717 TVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 766 (783)
Q Consensus 717 tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~ 766 (783)
++++++++.+|+++|.+.+++++||||+ +++++|+||++|+++..
T Consensus 175 tv~~d~~l~eAl~lM~e~~i~~LPVVD~-----~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 175 TANEGTTLKEANDIIWDHKLNTLPIVDK-----NGNLVYLVFRKDYDSHK 219 (502)
T ss_pred EECCCCcHHHHHHHHHHcCCCEEEEEcC-----CCeEEEEEEhHHHHhcc
Confidence 9999999999999999999999999997 78999999999999843
No 50
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=8.1e-11 Score=107.07 Aligned_cols=110 Identities=23% Similarity=0.302 Sum_probs=93.0
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.+++++++++++.+.+.+.+++.+||+|++ ++++|+|+..+++..+.....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-----------~~~~G~v~~~~l~~~~~~~~~---------------- 54 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPD-----------ERPIGIVTERDIVRAVAAGID---------------- 54 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-----------CCEEEEeeHHHHHHHHhccCC----------------
Confidence 56688999999999999998889999999986 899999999999765432110
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
...++.++|++++.++.+++++.++.++|.+.+...+||+++ +|+++|++|+
T Consensus 55 -----------------------~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~g~~~Gilt~ 106 (112)
T cd04624 55 -----------------------LDTPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDK-----GGELVGVISI 106 (112)
T ss_pred -----------------------CccCHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcC-----CCcEEEEEEH
Confidence 012345677788999999999999999999999999999997 7899999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|+++
T Consensus 107 ~dl~~ 111 (112)
T cd04624 107 RDLVR 111 (112)
T ss_pred HHhcc
Confidence 99986
No 51
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.23 E-value=5.5e-11 Score=108.44 Aligned_cols=112 Identities=20% Similarity=0.240 Sum_probs=91.9
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.++++++++.++.+.+.+++.+.+||+|++ ++++|+|+..++++.+....+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~G~v~~~~l~~~~~~~~~~~~------------- 57 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDN-----------GNLVGFLSEQDCLKQLLESSYHCD------------- 57 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCC-----------CeEEEEeehHHHHHHhhhhhhccC-------------
Confidence 56788999999999999988888899999886 899999999999765432110000
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
....+.++|++++.++.+++++.++++.|.+.+.+++||+| +++++|+||+
T Consensus 58 -----------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~------~~~~~Gvit~ 108 (114)
T cd04629 58 -----------------------GVATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVD------DGKLVGQISR 108 (114)
T ss_pred -----------------------CCccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEE------CCEEEEEEEH
Confidence 01235667778889999999999999999999999999998 3789999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|+++
T Consensus 109 ~di~~ 113 (114)
T cd04629 109 RDVLR 113 (114)
T ss_pred HHHhc
Confidence 99975
No 52
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.23 E-value=8.5e-11 Score=107.49 Aligned_cols=109 Identities=23% Similarity=0.308 Sum_probs=87.9
Q ss_pred CeeEEcCcccHHHHHHHHhcCC-CCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTT-HNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREK 678 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~-~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~ 678 (783)
++.++++++++.++.+.|.+.+ ...+||+|++ ++++|+|+.+|++....+.. .
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~dl~~~~~~~~-~-------------- 55 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNE-----------GRYVGIISLADLRAIPTSQW-A-------------- 55 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCC-----------CcEEEEEEHHHHHHHHHhhc-c--------------
Confidence 5778999999999999887654 7889999886 89999999999976442110 0
Q ss_pred hhhHHHhhhcCCccccccChhhhhhccCccccccC--CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEE
Q 003966 679 FSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGI 756 (783)
Q Consensus 679 ~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGI 756 (783)
...+.++|++ .+.++.+++++.++++.|++.+.+++||+|+ +++++|+
T Consensus 56 -------------------------~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~-----~~~~~Gv 105 (114)
T cd04801 56 -------------------------QTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVED-----SGQVIGL 105 (114)
T ss_pred -------------------------ccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcC-----CCcEEEE
Confidence 0123445543 2568999999999999999999999999997 6899999
Q ss_pred Eehhhchh
Q 003966 757 LTRQDLRA 764 (783)
Q Consensus 757 ITr~DLl~ 764 (783)
||++|+++
T Consensus 106 l~~~di~~ 113 (114)
T cd04801 106 ITEADLLR 113 (114)
T ss_pred Eeccceec
Confidence 99999975
No 53
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.23 E-value=1e-10 Score=105.65 Aligned_cols=106 Identities=21% Similarity=0.315 Sum_probs=90.7
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.+++++.++.++.+.|.+.+++.+||+|++ ++++|+++..|++......
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-----------~~~~G~v~~~dl~~~~~~~------------------ 53 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKD-----------NKLLGIVSLESLEQAYKEA------------------ 53 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCC-----------CcEEEEEEHHHHHHHhhcC------------------
Confidence 56788999999999999998899999999886 7999999999996532110
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
.++.++|.+.+.++++++++.++.+.|.+.+.+++||+++ +|+++|++|+
T Consensus 54 -------------------------~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~-----~g~~~Gvit~ 103 (109)
T cd04583 54 -------------------------KSLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDE-----DGKLVGLITR 103 (109)
T ss_pred -------------------------CcHhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECC-----CCeEEEEEeh
Confidence 1244566778889999999999999999999999999997 7899999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|+++
T Consensus 104 ~~l~~ 108 (109)
T cd04583 104 SSLVD 108 (109)
T ss_pred HHhhc
Confidence 99975
No 54
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.23 E-value=9.8e-11 Score=106.38 Aligned_cols=111 Identities=23% Similarity=0.291 Sum_probs=92.5
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.++++++++.++.+.+.+.+++.+||+|++ ++++|+++.++++..+......
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~Giv~~~~l~~~~~~~~~~--------------- 55 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDG-----------GRLVGIFSERDIVRKVALRGAS--------------- 55 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCC-----------CCEEEEEehHHHHHHHhhcCCC---------------
Confidence 56788999999999999999999999999886 7999999999997755321100
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
....+++++|++++.++.+++++.+++++|.+.+.+++||++ +++++|+||+
T Consensus 56 ----------------------~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~------~~~~~Gvit~ 107 (113)
T cd04623 56 ----------------------ALDTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVD------GGKLVGIVSI 107 (113)
T ss_pred ----------------------ccccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEe------CCEEEEEEEH
Confidence 001245667778889999999999999999999999999998 3789999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|+++
T Consensus 108 ~di~~ 112 (113)
T cd04623 108 GDVVK 112 (113)
T ss_pred HHhhc
Confidence 99976
No 55
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.23 E-value=1e-10 Score=106.10 Aligned_cols=107 Identities=23% Similarity=0.302 Sum_probs=91.1
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.++++++++.++.+.+++.+++.+||+|+ ++++|+++++|+...+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~------------~~~~G~v~~~dl~~~~~~~~----------------- 53 (110)
T cd04595 3 PVKTVRPEATIEEARELLLRYGHTALPVVEG------------GRVVGIISRRDVEKALRHGL----------------- 53 (110)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC------------CEEEEEEEHHHHHHHHhccc-----------------
Confidence 6788999999999999999888999999987 68999999999976442211
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
...++.++|++.+.++.+++++.+++++|.+.+.+++||++ +|+++|+||+
T Consensus 54 -----------------------~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~------~~~~~Gvvt~ 104 (110)
T cd04595 54 -----------------------GHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE------DGRLVGIVTR 104 (110)
T ss_pred -----------------------ccCcHHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe------CCEEEEEEEh
Confidence 01235567778899999999999999999999999999998 4789999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|+++
T Consensus 105 ~di~~ 109 (110)
T cd04595 105 TDLLR 109 (110)
T ss_pred HHhhc
Confidence 99975
No 56
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.23 E-value=1e-10 Score=106.78 Aligned_cols=109 Identities=22% Similarity=0.254 Sum_probs=91.3
Q ss_pred eeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhhh
Q 003966 601 VITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFS 680 (783)
Q Consensus 601 vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~~ 680 (783)
..++++++++.++.+.|.+.++..+||+|++ ++++|+++.+|++..+.+..-
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-----------~~~~G~v~~~dl~~~~~~~~~----------------- 55 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVDEN-----------GRLLGTVTDGDIRRALLKGLS----------------- 55 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEECCC-----------CCEEEEEEcHHHHHHHhcCCC-----------------
Confidence 4678999999999999998888899999876 899999999999764432110
Q ss_pred hHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehh
Q 003966 681 WVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQ 760 (783)
Q Consensus 681 ~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~ 760 (783)
....+.++|++.+.++++++++.+++++|++.+.+++||+|+ +++++|+||++
T Consensus 56 ----------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvit~~ 108 (113)
T cd04607 56 ----------------------LDDPVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDE-----EGRVVGLATLD 108 (113)
T ss_pred ----------------------cCCCHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECC-----CCCEEEEEEhH
Confidence 001345667788889999999999999999999999999997 78999999999
Q ss_pred hchh
Q 003966 761 DLRA 764 (783)
Q Consensus 761 DLl~ 764 (783)
|++.
T Consensus 109 di~~ 112 (113)
T cd04607 109 DLLS 112 (113)
T ss_pred Hhcc
Confidence 9975
No 57
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=1e-10 Score=107.03 Aligned_cols=112 Identities=13% Similarity=0.243 Sum_probs=91.4
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.++++++++.++++.|++.+++.+||+|++ .++++|+++.+|++..+.+.....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~----------~~~~~G~v~~~dl~~~~~~~~~~~-------------- 57 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRR----------ESDAYGIVTMRDILKKVVAEGRDP-------------- 57 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECC----------CCcEEEEEehHHHHHHHHhCCCCC--------------
Confidence 67889999999999999998888999999862 168999999999977543211000
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
...++.++|++++.++++++++.+++++|.+.+.+++||+| +++++|+||+
T Consensus 58 -----------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd------~~~~~Gvi~~ 108 (114)
T cd04630 58 -----------------------DRVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVE------NNELIGIISL 108 (114)
T ss_pred -----------------------CccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEee------CCEEEEEEEH
Confidence 01234566778888999999999999999999999999998 3789999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|+++
T Consensus 109 ~dl~~ 113 (114)
T cd04630 109 TDIFL 113 (114)
T ss_pred HHhhc
Confidence 99976
No 58
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=1e-10 Score=108.57 Aligned_cols=123 Identities=21% Similarity=0.267 Sum_probs=95.7
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhch-hhhhhccchhHHHhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKW-FLQEKRRTEEWEVREK 678 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~-f~~~~~~~~~~~~~~~ 678 (783)
++.++++++++.++.+.|.+.+++.+||+|++ .++++|+|+++|++..+.+.. +...+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~----------~~~~~G~v~~~dl~~~~~~~~~~~~~~~---------- 61 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEG----------TGKLVGIITATDILKYLGGGEKFNKIKT---------- 61 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCC----------CCEEEEEEEHHHHHHHhhccchhccccc----------
Confidence 56788999999999999999999999999873 179999999999987654321 000000
Q ss_pred hhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEe
Q 003966 679 FSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILT 758 (783)
Q Consensus 679 ~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIIT 758 (783)
. . .+.....++.++|++++.++++++++.++++.|++.+.+++||+|+ +|+++|+||
T Consensus 62 ------~------~------~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-----~~~~~Gvit 118 (125)
T cd04631 62 ------G------N------GLEAINEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDD-----DGKLVGIVT 118 (125)
T ss_pred ------c------c------cchhhhcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcC-----CCcEEEEEE
Confidence 0 0 0000123466778888999999999999999999999999999987 689999999
Q ss_pred hhhchhh
Q 003966 759 RQDLRAF 765 (783)
Q Consensus 759 r~DLl~~ 765 (783)
++|++++
T Consensus 119 ~~di~~~ 125 (125)
T cd04631 119 ERDLLKA 125 (125)
T ss_pred HHHhhcC
Confidence 9999863
No 59
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=1.5e-10 Score=107.58 Aligned_cols=120 Identities=16% Similarity=0.226 Sum_probs=92.0
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.++++++++.++.+.|.+.++..+||+|++ +++++|+|+..|+++.+....-..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~----------~~~~~Giv~~~dl~~~~~~~~~~~-------------- 57 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEE----------SGEVIGILSQRRLVEFLWENARSF-------------- 57 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCC----------CCcEEEEEEHHHHHHHHHHhHHhc--------------
Confidence 67789999999999999998888999999872 168999999999987553321000
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
+..+.. .....+..++|..++.++.+++++.+++++|.+.+.+++||+|+ +++++|+||+
T Consensus 58 ~~~~~~---------------~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-----~~~~vGiit~ 117 (123)
T cd04627 58 PGLDPL---------------YPIPLRDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDN-----QGNLIGNISV 117 (123)
T ss_pred cchhhh---------------hhhhhhhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECC-----CCcEEEEEeH
Confidence 000000 00012234567788889999999999999999999999999997 7899999999
Q ss_pred hhch
Q 003966 760 QDLR 763 (783)
Q Consensus 760 ~DLl 763 (783)
+|+.
T Consensus 118 ~di~ 121 (123)
T cd04627 118 TDVR 121 (123)
T ss_pred HHhh
Confidence 9984
No 60
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.21 E-value=1e-10 Score=106.42 Aligned_cols=112 Identities=23% Similarity=0.360 Sum_probs=93.3
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.++++++++.++.+.|++.+++.+||+|++ ++++|+|++.|+...+.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~G~v~~~~l~~~~~~~~~---------------- 54 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDD-----------GRLVGIVSLDDIREILFDPSL---------------- 54 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCC-----------CCEEEEEEHHHHHHHHhcccc----------------
Confidence 56789999999999999999999999999986 799999999999765432110
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
....++.++|++++.++++++++.++++.|.+.+.+++||+|+ . +++++|++|+
T Consensus 55 ----------------------~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~---~-~~~~~Gvvt~ 108 (114)
T cd04613 55 ----------------------YDLVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDD---D-PGKLLGILSR 108 (114)
T ss_pred ----------------------cccEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeC---C-CCEEEEEEEh
Confidence 0013456778889999999999999999999999999999973 1 3789999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|++.
T Consensus 109 ~di~~ 113 (114)
T cd04613 109 SDLLS 113 (114)
T ss_pred HHhhc
Confidence 99975
No 61
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.21 E-value=1.2e-10 Score=104.76 Aligned_cols=104 Identities=14% Similarity=0.112 Sum_probs=88.7
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.++++.+++.++.+.|.+.++..+||+|++ ++++|+++..|++....
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~-----------g~~~Giv~~~dl~~~~~-------------------- 50 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDAD-----------GQPLGFVTRREAARASG-------------------- 50 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCC-----------CCEEEEEeHHHHHHhcc--------------------
Confidence 56788999999999999998888999999876 89999999999964210
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
..+.++|++.+.++.+++++.+++++|.+.+...+||+|+ +++++|+||+
T Consensus 51 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvi~~ 100 (106)
T cd04582 51 -------------------------GCCGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDE-----DGRYVGEVTQ 100 (106)
T ss_pred -------------------------cchhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECC-----CCcEEEEEEH
Confidence 0133456667778999999999999999999999999997 7899999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|+++
T Consensus 101 ~~l~~ 105 (106)
T cd04582 101 RSIAD 105 (106)
T ss_pred HHhhc
Confidence 99976
No 62
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.21 E-value=1.2e-10 Score=106.19 Aligned_cols=111 Identities=21% Similarity=0.221 Sum_probs=91.7
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.++.+++++.++.+.+.+.+++.+||+|++ ++++|+++.+|+...+......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-----------~~~~G~v~~~dl~~~~~~~~~~--------------- 55 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDK-----------KRLVGIITRYDVLSYALESEEL--------------- 55 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCC-----------CCEEEEEEHHHHHHhhhhhhhh---------------
Confidence 34678999999999999999999999999886 7999999999997643221100
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
....+.++|.+++.++.+++++.++++.|++.+..++||+|+ +|+++|+||+
T Consensus 56 -----------------------~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-----~g~~~Gvvt~ 107 (113)
T cd04615 56 -----------------------KDAKVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDD-----KGKVGGIVTE 107 (113)
T ss_pred -----------------------cCCcHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECC-----CCeEEEEEEH
Confidence 012345667788899999999999999999999999999997 7899999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|+++
T Consensus 108 ~dl~~ 112 (113)
T cd04615 108 DDILR 112 (113)
T ss_pred HHhhc
Confidence 99975
No 63
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.21 E-value=8.9e-11 Score=108.53 Aligned_cols=120 Identities=23% Similarity=0.355 Sum_probs=93.7
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.++++++++.++.+.+.+.+++.+||+|++ ++++|++++.|++.......+..+.. .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~~l~~~~~~~~~~~~~~----------~ 60 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKA-----------GELIGIITRRDIIRAGSVRTSVEDQQ----------R 60 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCC-----------CcEEEEEEcHHHHhhccccccccchh----------h
Confidence 57789999999999999998899999999876 89999999999975321100000000 0
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
+ ......++.++|.+++.++.+++++.++++.|.+.+.+.+||+|+ +|+++|++|+
T Consensus 61 ~-------------------~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-----~g~~~Gvit~ 116 (122)
T cd04635 61 T-------------------QTKASPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNE-----KDQLVGIVDR 116 (122)
T ss_pred h-------------------hhhccCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcC-----CCcEEEEEEh
Confidence 0 000123456677788999999999999999999999999999997 7899999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|+++
T Consensus 117 ~dl~~ 121 (122)
T cd04635 117 HDVLK 121 (122)
T ss_pred HHhhc
Confidence 99986
No 64
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.21 E-value=1.4e-10 Score=103.25 Aligned_cols=94 Identities=18% Similarity=0.315 Sum_probs=83.9
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
+++++++++++.++.+.|.+.+...+||+|++ ++++|+++.+|+...
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-----------~~~~Giv~~~dl~~~---------------------- 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDD-----------GKLSGIITERDLIAK---------------------- 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCC-----------CCEEEEEEHHHHhcC----------------------
Confidence 67789999999999999998888999999976 899999999998431
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
..+.++++++++.++.++|.+.+.+++||+|+ +++++|+||+
T Consensus 49 ---------------------------------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~-----~~~~~Giit~ 90 (96)
T cd04614 49 ---------------------------------SEVVTATKRTTVSECAQKMKRNRIEQIPIING-----NDKLIGLLRD 90 (96)
T ss_pred ---------------------------------CCcEEecCCCCHHHHHHHHHHhCCCeeeEECC-----CCcEEEEEEH
Confidence 01568999999999999999999999999997 6899999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|+++
T Consensus 91 ~di~~ 95 (96)
T cd04614 91 HDLLK 95 (96)
T ss_pred HHhhc
Confidence 99986
No 65
>PRK11573 hypothetical protein; Provisional
Probab=99.20 E-value=1e-10 Score=131.31 Aligned_cols=135 Identities=13% Similarity=0.195 Sum_probs=111.5
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhh
Q 003966 586 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 665 (783)
Q Consensus 586 l~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~ 665 (783)
+++.+|+|+|+++.++++++.+.++.++.+.+++++|+.+||.+++ .+.++|+|..+|++..+.++.
T Consensus 184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~----------~D~IiGiv~~kDll~~~~~~~--- 250 (413)
T PRK11573 184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDS----------LDDAISMLRVREAYRLMTEKK--- 250 (413)
T ss_pred cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCC----------CCceEEEEEHHHHHHHhhccC---
Confidence 5788999999999999999999999999999999999999999764 268999999999976432210
Q ss_pred hhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeecc
Q 003966 666 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 745 (783)
Q Consensus 666 ~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~ 745 (783)
.... .++.+++ ++|+.|++++++.++++.|++.+.+...|+|+
T Consensus 251 ------------~~~~-----------------------~~l~~~~-r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE- 293 (413)
T PRK11573 251 ------------EFTK-----------------------ENMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE- 293 (413)
T ss_pred ------------cCCH-----------------------HHHHhhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEec-
Confidence 0000 0122333 57889999999999999999999999999998
Q ss_pred ccCCCCcEEEEEehhhchhhHhhhhCCcc
Q 003966 746 EAAGVSPVVGILTRQDLRAFNILTAFPHL 774 (783)
Q Consensus 746 ~~~~~~~vvGIITr~DLl~~~~~~~~~~l 774 (783)
.|...|+||.+|++++...+...+.
T Consensus 294 ----yG~~~GiVTleDilEeivGei~de~ 318 (413)
T PRK11573 294 ----YGDIQGLVTVEDILEEIVGDFTTSM 318 (413)
T ss_pred ----CCCeEEEeeHHHHHHHHhCCCCccc
Confidence 7889999999999999997765543
No 66
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.19 E-value=1.3e-10 Score=105.91 Aligned_cols=111 Identities=21% Similarity=0.199 Sum_probs=92.9
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.++++++++.++.+.+.+.+++.+||+|++ ++++|+++..++..++.+.. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~-----------~~~~G~v~~~~i~~~~~~~~-~~-------------- 56 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDED-----------GRLVGIFTDGDLRRALEKGL-DI-------------- 56 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCC-----------CCEEEEechHHHHHHHhccC-cc--------------
Confidence 56678999999999999988888899999986 89999999999987654321 00
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
....+.++|++.+.++.+++++.+++++|++.+...+||+++ +++++|+||+
T Consensus 57 -----------------------~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~iG~it~ 108 (114)
T cd04604 57 -----------------------LTLPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDD-----NGRPVGVLHI 108 (114)
T ss_pred -----------------------ccCCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECC-----CCCEEEEEEH
Confidence 001355677788889999999999999999999999999997 7899999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|+++
T Consensus 109 ~di~~ 113 (114)
T cd04604 109 HDLLR 113 (114)
T ss_pred HHhhc
Confidence 99976
No 67
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.19 E-value=2.3e-10 Score=103.77 Aligned_cols=108 Identities=21% Similarity=0.350 Sum_probs=91.5
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.++++++++.++.+.|.+.+++.+||+|+ ++++|+++.+++++...+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------------~~~~G~v~~~~l~~~~~~~~----------------- 52 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD------------GKLVGIVTLSDIAHAIARGL----------------- 52 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC------------CEEEEEEEHHHHHHHHhccc-----------------
Confidence 6778999999999999999888999999986 69999999999976543211
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
...++.++|++++.++.+++++.++++.|.+.+.+.+||+++ +++++|+||+
T Consensus 53 -----------------------~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~G~i~~ 104 (110)
T cd04588 53 -----------------------ELAKVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDD-----EGRPVGIITR 104 (110)
T ss_pred -----------------------cccCHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECC-----CCCEEEEEEh
Confidence 002345567788899999999999999999999999999987 7899999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|+++
T Consensus 105 ~dl~~ 109 (110)
T cd04588 105 TDILR 109 (110)
T ss_pred HHhhc
Confidence 99975
No 68
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.19 E-value=1.8e-10 Score=107.64 Aligned_cols=127 Identities=24% Similarity=0.259 Sum_probs=94.7
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.+++++.+++++.+.|.+.+++.+||+|++ ++++|+|+++|+..++.......... ..
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----------~~~~G~it~~dl~~~~~~~~~~~~~~---------~~ 61 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDN-----------GKLTGIVTRHDIVDFVVRDRDKARTG---------DR 61 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCC-----------CcEEEEEEHHHHHHHHhhhhhhcchh---------hh
Confidence 56788999999999999999999999999986 89999999999987653211000000 00
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
.. + .+.....++.++|+++++++.+++++.+++++|.+.+.+.+||+++ .++++++|+||+
T Consensus 62 ~~-~---------------~~~~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~---~~~~~~~Gvit~ 122 (128)
T cd04632 62 SG-E---------------KERMLDLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTP---DDDTKVVGILTK 122 (128)
T ss_pred hh-h---------------hhhhccCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEecc---CCCCcEEEEEEh
Confidence 00 0 0000113456788888999999999999999999999999999842 125889999999
Q ss_pred hhchhh
Q 003966 760 QDLRAF 765 (783)
Q Consensus 760 ~DLl~~ 765 (783)
+|++++
T Consensus 123 ~di~~~ 128 (128)
T cd04632 123 KDVLRA 128 (128)
T ss_pred HhhhcC
Confidence 999863
No 69
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.18 E-value=1.6e-10 Score=108.87 Aligned_cols=130 Identities=20% Similarity=0.266 Sum_probs=95.6
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.++++++++.++.+.+.+.+++.+||+|++ ++++|+|+..++...+.+........ ..
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~i~~~~l~~~~~~~~~~~~~~---------~~ 61 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNE-----------GRVVGIVSEGDLIRKIYKGKGLFYVT---------LL 61 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCC-----------CCEEEEEeHHHHHHHHhccCCccccc---------cc
Confidence 56789999999999999998889999999986 79999999999987654321000000 00
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
....+.+ ++ ..+ .....++.++|++++..+.+++++.+++++|.+.+.+.+||+| +++++|+||+
T Consensus 62 ~~~~~~~-----~~---~~~-~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~------~~~~iGvit~ 126 (132)
T cd04636 62 YSVIFLD-----ES---KIK-KLLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD------DGKLVGIISR 126 (132)
T ss_pred ccccccc-----hH---HHH-HHcCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEE------CCEEEEEEEH
Confidence 0000000 00 000 0012367788989999999999999999999999999999998 3789999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|+++
T Consensus 127 ~dl~~ 131 (132)
T cd04636 127 GDIIR 131 (132)
T ss_pred HHhhc
Confidence 99986
No 70
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.18 E-value=2.1e-10 Score=107.06 Aligned_cols=124 Identities=20% Similarity=0.261 Sum_probs=92.7
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.++++++++.++.+.|.+.+.+.+||+|++ ++++|+++..|++....+.......
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~-----------~~~~Giv~~~dl~~~~~~~~~~~~~------------ 58 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEK-----------GKLIGNISASDLKGLLLSPDDLLLY------------ 58 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCC-----------CcEEEEEEHHHhhhhhcCcchhhcc------------
Confidence 56789999999999999998889999999886 8999999999997755322100000
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
...++. ++. ....+....|..++.++++++++.+++++|.+.+.+++||+|+ +++++|+||+
T Consensus 59 ~~~~~~-------~~~------~~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~-----~~~~~Giit~ 120 (126)
T cd04642 59 RTITFK-------ELS------EKFTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDE-----EGKPIGVITL 120 (126)
T ss_pred cchhhh-------hhh------hhcccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECC-----CCCEEEEEEH
Confidence 000000 000 0001223456678889999999999999999999999999997 7899999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
.|+++
T Consensus 121 ~dil~ 125 (126)
T cd04642 121 TDIIS 125 (126)
T ss_pred HHHhc
Confidence 99875
No 71
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.18 E-value=1.2e-10 Score=133.52 Aligned_cols=146 Identities=16% Similarity=0.161 Sum_probs=112.4
Q ss_pred CccHHHHHHHhcCCCCCCC-CCCCcccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCC
Q 003966 562 NPSIYEIILELKGLPFLDA-HPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLAN 640 (783)
Q Consensus 562 ~~~iy~~~l~~kg~p~l~~-~~~~~l~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~ 640 (783)
..-.++.+++.+|+-..+. ...+.++.++++|+|.+ ++.++++++++.++.+.|.+++++.+||+|++
T Consensus 307 ~~~~~~~w~~~~~~~~~~~~~~~~~l~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~--------- 375 (454)
T TIGR01137 307 TKFLNDEWMKDNGFLDDEVLTVFDVLKNATVKDLHLP--APVTVHPTETVGDAIEILREYGFDQLPVVTEA--------- 375 (454)
T ss_pred CcccChHHHHhcCCcccccccHHHHhccCCHHHhCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC---------
Confidence 4444567777777532211 12345889999999998 99999999999999999998899999999986
Q ss_pred CCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecC
Q 003966 641 VATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIE 720 (783)
Q Consensus 641 ~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~ 720 (783)
++++|+|+.+|++..+...... ....+.++|++++.++++
T Consensus 376 --~~~~Givt~~dl~~~~~~~~~~--------------------------------------~~~~v~~im~~~~~~v~~ 415 (454)
T TIGR01137 376 --GKVLGSVTLRELLSALFAGKAN--------------------------------------PDDAVSKVMSKKFIQIGE 415 (454)
T ss_pred --CeEEEEEEHHHHHHHHhccCCC--------------------------------------cCCCHHHhcCCCCeEECC
Confidence 7999999999997754321100 001355677788889999
Q ss_pred CCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhH
Q 003966 721 SMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 766 (783)
Q Consensus 721 ~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~ 766 (783)
++++.++.++|.+.+ .+||++ +++++|+||++|+++.+
T Consensus 416 ~~~l~~a~~~~~~~~---~~vV~~-----~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 416 GEKLSDLSKFLEKNS---SAIVTE-----EGKPIGVVTKIDLLSFL 453 (454)
T ss_pred cCcHHHHHHHHHHCC---eeEEEE-----CCEEEEEEEHHHHHHhh
Confidence 999999999999854 466665 68999999999999863
No 72
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.18 E-value=1.5e-10 Score=131.69 Aligned_cols=121 Identities=20% Similarity=0.333 Sum_probs=102.0
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhh
Q 003966 588 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK 667 (783)
Q Consensus 588 ~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~ 667 (783)
-++.++.|.+ +++++++++++.++.+.|++++++.+||+|++ .+.++++|+|+.+|++.... .
T Consensus 79 Vk~~~~~~~~--~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~--------~~~~~lvGIVt~rDL~~~~~-------~ 141 (450)
T TIGR01302 79 VKRAENGIIS--DPVTISPETTVADVLELMERKGISGIPVVEDG--------DMTGKLVGIITKRDIRFVKD-------K 141 (450)
T ss_pred hccccCceec--CceEeCCCCCHHHHHHHHHHcCCCEEEEEeCC--------CCCCeEEEEEEHHHHhhhhc-------C
Confidence 3467788988 89999999999999999999999999999874 11258999999999953110 0
Q ss_pred ccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCcccccc-CCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccc
Q 003966 668 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTN-TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE 746 (783)
Q Consensus 668 ~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~-~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~ 746 (783)
..+++++|+ .+++++++++++.+++++|++.+.+++||+|+
T Consensus 142 ------------------------------------~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe-- 183 (450)
T TIGR01302 142 ------------------------------------GKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDK-- 183 (450)
T ss_pred ------------------------------------CCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcC--
Confidence 123566777 48899999999999999999999999999998
Q ss_pred cCCCCcEEEEEehhhchhhH
Q 003966 747 AAGVSPVVGILTRQDLRAFN 766 (783)
Q Consensus 747 ~~~~~~vvGIITr~DLl~~~ 766 (783)
+|+++|+||++|+++..
T Consensus 184 ---~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 184 ---NGELVGLITMKDIVKRR 200 (450)
T ss_pred ---CCcEEEEEEhHHhhhcc
Confidence 88999999999999864
No 73
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.18 E-value=2.2e-10 Score=104.11 Aligned_cols=109 Identities=15% Similarity=0.215 Sum_probs=90.7
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.+++++++++++.+.+.+.+++.+||+|++ ++++|+++.+|+.........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-----------~~~~G~v~~~dl~~~~~~~~~---------------- 54 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNE-----------EKLKGVVTFTDILDLDLFESF---------------- 54 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCC-----------CCEEEEEehHHhHHHHhhccc----------------
Confidence 56789999999999999998899999999886 899999999999764321100
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
....+.++|++++.++.+++++.++++.|.+.+.+.+||+| +|+++|+||+
T Consensus 55 -----------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~------~~~~~G~it~ 105 (111)
T cd04626 55 -----------------------LEKKVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVD------DNKLIGVVRT 105 (111)
T ss_pred -----------------------ccCcHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeE------CCEEEEEEEh
Confidence 00134556778888999999999999999999999999998 3789999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|+++
T Consensus 106 ~di~~ 110 (111)
T cd04626 106 KDILD 110 (111)
T ss_pred HHhcc
Confidence 99875
No 74
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.17 E-value=2.5e-10 Score=105.62 Aligned_cols=121 Identities=21% Similarity=0.305 Sum_probs=94.6
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++++++++++++++.+.|++.+++.+||+|+ ++++|+++.+++...+.+.. ..... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~------------~~~~G~v~~~~l~~~~~~~~-~~~~~-----~----- 58 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED------------NELVGVISDRDYLKAISPFL-GTAGE-----T----- 58 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC------------CeEEEEEEHHHHHHHHHHHh-ccccc-----h-----
Confidence 5678999999999999999989999999986 79999999999977553211 00000 0
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
..++. ....+++++|+++++++.+++++.++++.|.+.+.+.+||+|+ +++++|++|+
T Consensus 59 -~~~~~----------------~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~-----~~~~~Gvit~ 116 (122)
T cd04637 59 -EKDLA----------------TLNRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDE-----NGQLIGIITW 116 (122)
T ss_pred -HHHHH----------------HHHhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECC-----CCCEEEEEEH
Confidence 00000 0012466778889999999999999999999999999999987 7899999999
Q ss_pred hhchhh
Q 003966 760 QDLRAF 765 (783)
Q Consensus 760 ~DLl~~ 765 (783)
+|++++
T Consensus 117 ~dll~~ 122 (122)
T cd04637 117 KDLLKY 122 (122)
T ss_pred HHhhhC
Confidence 999864
No 75
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.17 E-value=2.8e-10 Score=103.54 Aligned_cols=111 Identities=23% Similarity=0.298 Sum_probs=90.9
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.++++++++.++.+.|.+++++.+||+|+ ++++|++++.+++..+.... ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~------------~~~~G~i~~~~l~~~~~~~~----~~----------- 54 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN------------DRLVGIVTDRDIVVRAVAEG----RD----------- 54 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC------------CEEEEEEEhHHHHHHHhhcc----CC-----------
Confidence 6778999999999999999999999999987 79999999999863211100 00
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
. ...++.++|++.+.++.+++++.++.+.|.+.+.+++||+++ +++++|+||+
T Consensus 55 ---------------------~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~G~it~ 107 (113)
T cd04622 55 ---------------------P-DTTTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDD-----DGRLVGIVSL 107 (113)
T ss_pred ---------------------c-ccCCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECC-----CCcEEEEEEH
Confidence 0 011356677888899999999999999999999999999987 6899999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|+++
T Consensus 108 ~di~~ 112 (113)
T cd04622 108 GDLAR 112 (113)
T ss_pred HHhhc
Confidence 99975
No 76
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.17 E-value=2.7e-10 Score=103.20 Aligned_cols=109 Identities=21% Similarity=0.313 Sum_probs=91.2
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.++++++++.++.+.|.+.+.+.+||+|+ ++++|++++.|+.....+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------------~~~~G~v~~~dl~~~~~~~~~---------------- 53 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD------------GRLVGIVTLADIRRVPAEGRE---------------- 53 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC------------CeEEEEEEHHHHHHHHhcCcc----------------
Confidence 6778999999999999999888899999987 689999999999764322110
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
...++.++|.+++.++.+++++.++++.|.+.+.+++||+|+ +++++|+||+
T Consensus 54 -----------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~G~it~ 105 (111)
T cd04612 54 -----------------------ATVLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDD-----SGRLVGIVSR 105 (111)
T ss_pred -----------------------cccCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcC-----CCCEEEEEEH
Confidence 002344567788899999999999999999999999999987 7899999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|+++
T Consensus 106 ~di~~ 110 (111)
T cd04612 106 SDLLR 110 (111)
T ss_pred HHhhh
Confidence 99975
No 77
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.17 E-value=2.5e-10 Score=104.46 Aligned_cols=110 Identities=20% Similarity=0.285 Sum_probs=87.7
Q ss_pred CeeEEcCcccHHHHHHHHhcCC-CCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTT-HNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREK 678 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~-~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~ 678 (783)
++.++++++++.++.+.+.+.+ +..+||+|+ ++++|+++..|++..+......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------------~~~~G~v~~~dl~~~~~~~~~~-------------- 55 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEK------------GRLLGIFTERDIVRLTAIGKDL-------------- 55 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCC------------CcEEEEEeHHHHHHHHhcCCCc--------------
Confidence 4567899999999999998777 667777764 7899999999997654321100
Q ss_pred hhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCC--CCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEE
Q 003966 679 FSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIES--MSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGI 756 (783)
Q Consensus 679 ~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~--~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGI 756 (783)
....+.++|.+++.++.++ +++.+++++|.+.+...+||+|+ +|+++|+
T Consensus 56 ------------------------~~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~-----~~~~~Gv 106 (115)
T cd04620 56 ------------------------SDLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDD-----QGQLIGL 106 (115)
T ss_pred ------------------------cccCHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcC-----CCCEEEE
Confidence 0012455676778889887 79999999999999999999997 7899999
Q ss_pred Eehhhchh
Q 003966 757 LTRQDLRA 764 (783)
Q Consensus 757 ITr~DLl~ 764 (783)
||++|+++
T Consensus 107 it~~dl~~ 114 (115)
T cd04620 107 VTAESIRQ 114 (115)
T ss_pred EEhHHhhc
Confidence 99999986
No 78
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.17 E-value=2.6e-10 Score=104.93 Aligned_cols=120 Identities=25% Similarity=0.296 Sum_probs=94.4
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.++++++++.++.+.|.+.+++.+||+|+ ++++|++++.++...+........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~------------~~~~G~i~~~~l~~~~~~~~~~~~------------- 56 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR------------GKLVGIVTDRDLKLASPSKATTLD------------- 56 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC------------CeEEEEEeHHHHHHhhhccccccc-------------
Confidence 5678999999999999999989999999987 699999999999765432110000
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
..+. .. .....++.++|++++.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+||+
T Consensus 57 -~~~~----------~~----~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvvt~ 116 (122)
T cd04585 57 -IWEL----------YY----LLSKIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDD-----QGRLVGIITE 116 (122)
T ss_pred -chhh----------hh----hhcccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECC-----CCcEEEEEEH
Confidence 0000 00 00123567788889999999999999999999999999999987 6899999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|+++
T Consensus 117 ~di~~ 121 (122)
T cd04585 117 SDLFR 121 (122)
T ss_pred HHhhh
Confidence 99986
No 79
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.17 E-value=2.2e-10 Score=104.86 Aligned_cols=109 Identities=18% Similarity=0.322 Sum_probs=88.1
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.++++++++.++.+.|.+.+++.+||+|+. ++.++++|+++.+|++.....
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~--------~~~~~~~G~v~~~dl~~~~~~------------------- 55 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDG--------KSGGKLLGIVTSRDIDFLTDS------------------- 55 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCC--------CcCCEEEEEEEhHHhhhhhcc-------------------
Confidence 56788999999999999988888899999862 112899999999998531100
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecC--CCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEE
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIE--SMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGIL 757 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~--~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGII 757 (783)
..+++++|.+.+.++.. ++++.+++++|++.+.+++||+|+ +++++|+|
T Consensus 56 ------------------------~~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~-----~~~~~Gvi 106 (114)
T cd04602 56 ------------------------ETPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVND-----DGELVALV 106 (114)
T ss_pred ------------------------CCCHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECC-----CCeEEEEE
Confidence 01245667777777766 999999999999999999999997 78999999
Q ss_pred ehhhchh
Q 003966 758 TRQDLRA 764 (783)
Q Consensus 758 Tr~DLl~ 764 (783)
|++|+++
T Consensus 107 t~~di~~ 113 (114)
T cd04602 107 TRSDLKK 113 (114)
T ss_pred EHHHhhc
Confidence 9999875
No 80
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.17 E-value=1.8e-10 Score=134.82 Aligned_cols=161 Identities=18% Similarity=0.140 Sum_probs=114.6
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhc
Q 003966 589 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 668 (783)
Q Consensus 589 l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~ 668 (783)
.+++|+|.+ +++++++++++.++++.|.+++++.+||+|++ ++++|+|+++|+...+.+..-.....
T Consensus 68 ~~V~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----------g~l~Givt~~di~~~~~~~~~~~~~~ 134 (546)
T PRK14869 68 PQVRDLEID--KPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-----------GKLLGLVSLSDLARAYMDILDPEILS 134 (546)
T ss_pred CcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CEEEEEEEHHHHHHHHHhhcchhhhh
Confidence 689999998 99999999999999999999999999999986 89999999999988665422100000
Q ss_pred --cchhHHHhh------------------hh--------hhHHHhhhcC----------------------------Cc-
Q 003966 669 --RTEEWEVRE------------------KF--------SWVELAEREG----------------------------KI- 691 (783)
Q Consensus 669 --~~~~~~~~~------------------~~--------~~~d~~~~~~----------------------------~i- 691 (783)
...-.++.+ ++ ...+..+++. .+
T Consensus 135 ~~~~t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~ 214 (546)
T PRK14869 135 KSPTSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVS 214 (546)
T ss_pred hcCCCHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCC
Confidence 000000000 00 0000000000 00
Q ss_pred ------------------cccccChhhhhhccCcccccc-CCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCc
Q 003966 692 ------------------EEVAVTSEEMEMYIDLHPLTN-TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSP 752 (783)
Q Consensus 692 ------------------~di~~~~~~~~~~~dl~~im~-~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~ 752 (783)
.|.--+.....+...+.++|+ +++.++++++++.++.++|.+.+.+++||||+ +|+
T Consensus 215 ~~v~~la~~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~-----~g~ 289 (546)
T PRK14869 215 EDVLELAKENGVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDE-----DGK 289 (546)
T ss_pred HHHHHHHHhCCCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcC-----CCC
Confidence 000011122346678899999 89999999999999999999999999999998 899
Q ss_pred EEEEEehhhchhhHh
Q 003966 753 VVGILTRQDLRAFNI 767 (783)
Q Consensus 753 vvGIITr~DLl~~~~ 767 (783)
++|+||++|+++...
T Consensus 290 lvGiit~~dl~~~~~ 304 (546)
T PRK14869 290 VVGVISRYHLLSPVR 304 (546)
T ss_pred EEEEEEHHHhhcccc
Confidence 999999999998554
No 81
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.16 E-value=4e-10 Score=102.05 Aligned_cols=102 Identities=44% Similarity=0.682 Sum_probs=87.0
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
.+..+++++++.++.+.+.+.+++.+||+|+. ..+++++|+|+++++.....+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~--------~~~~~~~G~v~~~dl~~~~~~------------------- 55 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDST--------EESPRLVGYILRSQLVVALKN------------------- 55 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCC--------CCCCEEEEEEeHHHHHHHHHH-------------------
Confidence 67789999999999999999989999999872 002899999999998542210
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
+|.+++.++++++++.+++++|.+.+.+++||++ +|+++|+||+
T Consensus 56 ------------------------------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~------~~~~~Gvvt~ 99 (105)
T cd04591 56 ------------------------------YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD------EGRLVGIITR 99 (105)
T ss_pred ------------------------------hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE------CCeEEEEEEh
Confidence 4567788999999999999999999999999995 5789999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|+++
T Consensus 100 ~dl~~ 104 (105)
T cd04591 100 KDLLK 104 (105)
T ss_pred hhhhc
Confidence 99976
No 82
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.16 E-value=2.8e-10 Score=103.60 Aligned_cols=111 Identities=23% Similarity=0.269 Sum_probs=90.9
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.++++++++.++.+.|.+.+.+.+||+|+ ++++|+|+.+|++..+.......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~------------~~~~G~v~~~dl~~~~~~~~~~~-------------- 55 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG------------NKLVGIFTSKDIALRVVAQGLDP-------------- 55 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC------------CEEEEEEEhHHHHHHHHhcCCCc--------------
Confidence 5678899999999999998888889999986 69999999999964322110000
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
...++.++|++++.++.+++++.+++++|.+.+.+++||+++ +++++|+||+
T Consensus 56 -----------------------~~~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-----~~~~~Gvvs~ 107 (113)
T cd04587 56 -----------------------ESTLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDK-----SGQVVGLLDV 107 (113)
T ss_pred -----------------------CcCCHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECC-----CCCEEEEEEH
Confidence 002356678888999999999999999999999999999997 6899999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|++.
T Consensus 108 ~dl~~ 112 (113)
T cd04587 108 TKLTH 112 (113)
T ss_pred HHhcc
Confidence 99975
No 83
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.16 E-value=3.7e-10 Score=102.32 Aligned_cols=109 Identities=20% Similarity=0.293 Sum_probs=91.8
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.++++.+++.++.+.|.++++..+||+|+ ++++|+++.+|+......+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~------------~~~~G~v~~~~l~~~~~~~~~---------------- 53 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD------------GRPLGIVTERDILRLLASGPD---------------- 53 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC------------CEEEEEEeHHHHHHHHhcCCC----------------
Confidence 5678899999999999999888899999976 699999999999765432110
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
....+.++|++++.++++++++.++++.|.+.+.+.+||+|+ +++++|+||+
T Consensus 54 -----------------------~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~-----~~~~~Gvi~~ 105 (111)
T cd04611 54 -----------------------LQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDD-----DGELLGLLSQ 105 (111)
T ss_pred -----------------------CCcCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECC-----CCcEEEEEEh
Confidence 012355677788999999999999999999999999999997 7899999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|+++
T Consensus 106 ~di~~ 110 (111)
T cd04611 106 TDLLQ 110 (111)
T ss_pred HHhhc
Confidence 99975
No 84
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.15 E-value=1.7e-10 Score=132.00 Aligned_cols=126 Identities=13% Similarity=0.213 Sum_probs=102.8
Q ss_pred ccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhcc
Q 003966 590 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRR 669 (783)
Q Consensus 590 ~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~ 669 (783)
++++.|.. +++++++++++.++.+.+++++++.+||+|++ ..+++++|+|+.+|+... .+
T Consensus 97 ~~e~g~i~--dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~--------~~~gkLvGIVt~~DL~~~-------~~--- 156 (495)
T PTZ00314 97 RFENGFIM--DPYVLSPNHTVADVLEIKEKKGFSSILITVDG--------KVGGKLLGIVTSRDIDFV-------KD--- 156 (495)
T ss_pred cccccccc--CCeecCCCCCHHHHHHHHHHcCCcEEEEEeCC--------ccCCeEEEEEEHHHHhhc-------cc---
Confidence 36677887 88899999999999999999999999999873 123799999999998421 00
Q ss_pred chhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccC--CCeeecCCCCHHHHHHHHHHcCCCEEEEeecccc
Q 003966 670 TEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA 747 (783)
Q Consensus 670 ~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~ 747 (783)
...+++++|++ ++.++++++++.++.++|.+.+.+.+||+|+
T Consensus 157 ---------------------------------~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~--- 200 (495)
T PTZ00314 157 ---------------------------------KSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVND--- 200 (495)
T ss_pred ---------------------------------CCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC---
Confidence 01245677776 7889999999999999999999999999998
Q ss_pred CCCCcEEEEEehhhchhhHhhhhCCcccc
Q 003966 748 AGVSPVVGILTRQDLRAFNILTAFPHLER 776 (783)
Q Consensus 748 ~~~~~vvGIITr~DLl~~~~~~~~~~l~~ 776 (783)
+++++|+||++|+++.. .+|+..+
T Consensus 201 --~g~liGIIT~~DIl~~~---~~p~a~~ 224 (495)
T PTZ00314 201 --NGELVALVSRSDLKKNR---GYPNASL 224 (495)
T ss_pred --CCcEEEEEEehHhhhcc---cCchhhh
Confidence 88999999999999853 3454443
No 85
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.15 E-value=2.7e-10 Score=104.15 Aligned_cols=115 Identities=20% Similarity=0.248 Sum_probs=90.7
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
+++++++++++.++.+.+++.+.+.+||+|++ ++++|+++.++++..+.+.. .. +
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-----------~~~~Giv~~~dl~~~~~~~~-~~--------~----- 56 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKE-----------GKYVGTISLTDILWKLKGLE-NL--------D----- 56 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCC-----------CcEEEEEeHHHHHHHhhccC-ch--------h-----
Confidence 57889999999999999998889999999976 79999999999976543211 00 0
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
..++ ....+.++|++.+.++.+++++.+++++|.+.+ .+||+|+ +++++|+||+
T Consensus 57 -~~~~------------------~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~-----~~~~~Gvit~ 110 (116)
T cd04643 57 -LERL------------------VDLKVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDD-----DGIFIGIITR 110 (116)
T ss_pred -HHHH------------------hCCcHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeC-----CCeEEEEEEH
Confidence 0000 012356678888999999999999999998855 5999997 7899999999
Q ss_pred hhchhh
Q 003966 760 QDLRAF 765 (783)
Q Consensus 760 ~DLl~~ 765 (783)
+|++++
T Consensus 111 ~dil~~ 116 (116)
T cd04643 111 REILKA 116 (116)
T ss_pred HHhhcC
Confidence 999863
No 86
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.15 E-value=1.6e-10 Score=131.21 Aligned_cols=121 Identities=21% Similarity=0.225 Sum_probs=103.7
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhh
Q 003966 586 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 665 (783)
Q Consensus 586 l~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~ 665 (783)
++.+++.++|.+ ++++++++++++++.+.|++.+++.+||+|+ ++++|+|+.+|+... .
T Consensus 85 v~~VKv~eim~~--~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~------------gklvGIVT~rDL~~~-------~ 143 (475)
T TIGR01303 85 VAFVKSRDLVLD--TPITLAPHDTVSDAMALIHKRAHGAAVVILE------------DRPVGLVTDSDLLGV-------D 143 (475)
T ss_pred Hhhcchhhcccc--CCeEECCCCCHHHHHHHHHhcCCeEEEEEEC------------CEEEEEEEHHHhhcC-------C
Confidence 567888899998 8899999999999999999988888888875 689999999998310 0
Q ss_pred hhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeecc
Q 003966 666 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 745 (783)
Q Consensus 666 ~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~ 745 (783)
....++++|+++++++++++++.+++++|.+.+.+++||+|+
T Consensus 144 -------------------------------------~~~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~- 185 (475)
T TIGR01303 144 -------------------------------------RFTQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDA- 185 (475)
T ss_pred -------------------------------------CCCCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcC-
Confidence 012356778899999999999999999999999999999997
Q ss_pred ccCCCCcEEEEEehhhchhhHhhh
Q 003966 746 EAAGVSPVVGILTRQDLRAFNILT 769 (783)
Q Consensus 746 ~~~~~~~vvGIITr~DLl~~~~~~ 769 (783)
+++++|+||++||++.....
T Consensus 186 ----~g~LvGIIT~~DLl~~~~~~ 205 (475)
T TIGR01303 186 ----DGTLAGILTRTGALRATIYT 205 (475)
T ss_pred ----CCeEEEEEEHHHHHHHHhCC
Confidence 78999999999999865543
No 87
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.14 E-value=2.3e-10 Score=103.53 Aligned_cols=106 Identities=19% Similarity=0.296 Sum_probs=88.5
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.+++.++++.++.+.+.+.++..+||+|++ ++++|+++.+++.... .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~~l~~~~---~----------------- 51 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDDD-----------GKLVGIVTNRDLRFET---D----------------- 51 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCC-----------CEEEEEEEhhHeeecc---c-----------------
Confidence 56788999999999999998899999999986 8999999998884210 0
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecC-CCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEe
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIE-SMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILT 758 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~-~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIIT 758 (783)
....+.++|++.+.++.+ ++++.+++++|++.+.+.+||+|+ +++++|+||
T Consensus 52 -----------------------~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvi~ 103 (110)
T cd04601 52 -----------------------LDKPVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDD-----EGKLKGLIT 103 (110)
T ss_pred -----------------------CCCCHHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcC-----CCCEEEEEE
Confidence 001345667776777777 999999999999999999999997 789999999
Q ss_pred hhhchh
Q 003966 759 RQDLRA 764 (783)
Q Consensus 759 r~DLl~ 764 (783)
++|+++
T Consensus 104 ~~dil~ 109 (110)
T cd04601 104 VKDIEK 109 (110)
T ss_pred hhhhhc
Confidence 999976
No 88
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.14 E-value=3.5e-10 Score=107.43 Aligned_cols=133 Identities=18% Similarity=0.184 Sum_probs=95.8
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.+++++.++.++.+.|.+.+++.+||+|++ ++++|+|+..|++..+........+ ...+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~-----------~~~~Giv~~~dl~~~~~~~~~~~~~--~~~~------ 62 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDN-----------GKPVGVITYRDLAFAEFEDNERGLP--KKSI------ 62 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCC-----------CCEEEEEeHHHHHHHhhcccccccc--hhhh------
Confidence 56788999999999999999899999999986 8999999999998766432110000 0000
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
.+....+...+... .....+++++|.+.+.++.+++++.++++.|.+.+.+++||++ +++++|+||+
T Consensus 63 ---~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~------~~~~~Gvit~ 129 (135)
T cd04621 63 ---KMKRKAGQKRYRYV----KEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVD------NDNIVGVITK 129 (135)
T ss_pred ---hhhhhccccccccc----ccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEe------CCEEEEEEEH
Confidence 00000000000000 0012346778888889999999999999999999999999998 4789999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|+++
T Consensus 130 ~di~~ 134 (135)
T cd04621 130 TDICR 134 (135)
T ss_pred HHHhh
Confidence 99976
No 89
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.13 E-value=2.8e-10 Score=130.78 Aligned_cols=116 Identities=17% Similarity=0.234 Sum_probs=100.8
Q ss_pred ccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhcc
Q 003966 590 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRR 669 (783)
Q Consensus 590 ~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~ 669 (783)
+++|+|.+ +++++++++++.++.+.|.+++++.+||+|++ ++++|+|+++|+.... . .
T Consensus 88 ~~~dim~~--~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~-----------g~lvGiVt~~DL~~~~---~----~-- 145 (486)
T PRK05567 88 RSESGVVT--DPVTVTPDTTLAEALALMARYGISGVPVVDEN-----------GKLVGIITNRDVRFET---D----L-- 145 (486)
T ss_pred hhhhcccC--CCeEeCCCCCHHHHHHHHHHhCCCEEEEEccC-----------CEEEEEEEHHHhhhcc---c----C--
Confidence 57788988 99999999999999999999999999999986 8999999999984310 0 0
Q ss_pred chhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCcccccc-CCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccC
Q 003966 670 TEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTN-TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA 748 (783)
Q Consensus 670 ~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~-~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~ 748 (783)
..++.++|+ ++++++++++++.+++++|.+.+.+.+||+|+
T Consensus 146 ----------------------------------~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe---- 187 (486)
T PRK05567 146 ----------------------------------SQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDD---- 187 (486)
T ss_pred ----------------------------------CCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC----
Confidence 013456677 67889999999999999999999999999998
Q ss_pred CCCcEEEEEehhhchhhH
Q 003966 749 GVSPVVGILTRQDLRAFN 766 (783)
Q Consensus 749 ~~~~vvGIITr~DLl~~~ 766 (783)
+++++|+||++|+++..
T Consensus 188 -~g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 188 -NGRLKGLITVKDIEKAE 204 (486)
T ss_pred -CCcEEEEEEhHHhhhhh
Confidence 88999999999999864
No 90
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.13 E-value=3.4e-10 Score=101.60 Aligned_cols=103 Identities=19% Similarity=0.282 Sum_probs=87.6
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.++++++++.++.+.|++.+++.+||+|+ ++++|+++.+++.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~------------~~~~Giv~~~~l~~~~~-------------------- 49 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVED------------GKLVGIITSRDVRRAHP-------------------- 49 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC------------CEEEEEEehHHhhcccc--------------------
Confidence 5677899999999999999888899999984 79999999999854110
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
...+.++|++.+.++++++++.++++.|.+.+.+++||+| +++++|+||+
T Consensus 50 ------------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~------~~~~~G~it~ 99 (105)
T cd04599 50 ------------------------NRLVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLR------ERKLVGIITK 99 (105)
T ss_pred ------------------------cCCHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEE------CCEEEEEEEH
Confidence 0124556778899999999999999999999999999998 4789999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|++.
T Consensus 100 ~~l~~ 104 (105)
T cd04599 100 GTIAL 104 (105)
T ss_pred HHhcc
Confidence 99974
No 91
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.13 E-value=4.2e-10 Score=101.67 Aligned_cols=109 Identities=24% Similarity=0.322 Sum_probs=88.3
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.++++++++.++.+.+.+.+++.+||+|+ ++++|+++..|+.+.+..... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~------------~~~~G~v~~~dl~~~~~~~~~-~-------------- 54 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD------------GRVVGSIDESDLLDALIEGKA-K-------------- 54 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC------------CeeEEEEeHHHHHHHHhcccc-c--------------
Confidence 5678999999999999999999999999986 689999999999875432110 0
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
...++.++|++++.++++++++.++.++|++ . ..+||+++ +++++|+||+
T Consensus 55 -----------------------~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~-----~~~~~Gvvt~ 104 (110)
T cd04609 55 -----------------------FSLPVREVMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDE-----GGKFVGIITR 104 (110)
T ss_pred -----------------------cCcCHHHHhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEec-----CCeEEEEEeH
Confidence 0123456677788899999999999999998 3 45889987 7899999999
Q ss_pred hhchhh
Q 003966 760 QDLRAF 765 (783)
Q Consensus 760 ~DLl~~ 765 (783)
+|++++
T Consensus 105 ~di~~~ 110 (110)
T cd04609 105 ADLLKY 110 (110)
T ss_pred HHhhcC
Confidence 999864
No 92
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.12 E-value=7e-10 Score=100.84 Aligned_cols=110 Identities=17% Similarity=0.250 Sum_probs=87.7
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.++++++++.++.+.+.+.+...++|.++ ++++|+++.+|+++.+.... .+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~------------~~~~G~v~~~dl~~~~~~~~--~~~------------ 55 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVMER------------GELVGLLTFREVLQAMAQHG--AGV------------ 55 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEeeC------------CEEEEEEEHHHHHHHHHhcC--Cch------------
Confidence 5778999999999999998777777766654 79999999999976543210 000
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
....+.++|+..+.++.+++++.+++++|.+.+.+.+||++ +++++|+||+
T Consensus 56 -----------------------~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~------~~~~~Gvvt~ 106 (112)
T cd04625 56 -----------------------LDTTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD------GGTLLGVISF 106 (112)
T ss_pred -----------------------hcCCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE------CCEEEEEEEH
Confidence 01235567778888999999999999999999999999997 4789999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|+++
T Consensus 107 ~dl~~ 111 (112)
T cd04625 107 HDVAK 111 (112)
T ss_pred HHhhc
Confidence 99976
No 93
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.12 E-value=3.5e-10 Score=105.70 Aligned_cols=117 Identities=15% Similarity=0.213 Sum_probs=87.1
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.++++++++.++++.|.+.+.+.+||+|++ ++++|+++..|+......+.......
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-----------~~~~Giv~~~dl~~~~~~~~~~~~~~----------- 59 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSD-----------DNFIGVITAVDLLGEEPIKRIQEGGI----------- 59 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCC-----------CcEEEEEEHHHHhhChhhHHHHHcCC-----------
Confidence 46788999999999999988888899999976 79999999999975211000000000
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeee------cCCCCHHHHHHHHHHcCCCEEEEeeccccCCC-Cc
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTV------IESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV-SP 752 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV------~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~-~~ 752 (783)
.....+++++|++++.++ .+++++.+++++|.+.+.+++||+|+ + ++
T Consensus 60 ---------------------~~~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~-----~~~~ 113 (126)
T cd04640 60 ---------------------SRSELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDR-----EHHQ 113 (126)
T ss_pred ---------------------CchheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEEC-----CCCE
Confidence 000123456676555433 37899999999999999999999997 5 78
Q ss_pred EEEEEehhhchh
Q 003966 753 VVGILTRQDLRA 764 (783)
Q Consensus 753 vvGIITr~DLl~ 764 (783)
++|+||++|+++
T Consensus 114 ~~G~it~~di~~ 125 (126)
T cd04640 114 IRGIISTSDIAR 125 (126)
T ss_pred EEEEEeHHHHhh
Confidence 999999999976
No 94
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.12 E-value=3.6e-10 Score=129.36 Aligned_cols=115 Identities=13% Similarity=0.165 Sum_probs=96.1
Q ss_pred cccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHH
Q 003966 595 IDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWE 674 (783)
Q Consensus 595 M~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~ 674 (783)
|.+ +++++++++++.++.+.|.+++++.+||+|++ ...++++|+|+.+|+.... +
T Consensus 106 mi~--dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~--------~~~GklvGIVT~~DL~~v~---~------------ 160 (505)
T PLN02274 106 FVS--DPVVKSPSSTISSLDELKASRGFSSVCVTETG--------TMGSKLLGYVTKRDWDFVN---D------------ 160 (505)
T ss_pred ccC--CCeeeCCCCcHHHHHHHHHhcCCceEEEEeCC--------CcCCeEEEEEEHHHHhhcc---c------------
Confidence 667 88899999999999999999999999999872 1127999999999994321 0
Q ss_pred HhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCC--CeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCc
Q 003966 675 VREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTT--PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSP 752 (783)
Q Consensus 675 ~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~--p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~ 752 (783)
....++++|++. ..++++++++.+++++|.+.+.+.+||||+ +++
T Consensus 161 ----------------------------~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~-----~g~ 207 (505)
T PLN02274 161 ----------------------------RETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE-----DGE 207 (505)
T ss_pred ----------------------------cCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC-----CCe
Confidence 012355677666 679999999999999999999999999997 789
Q ss_pred EEEEEehhhchhhHh
Q 003966 753 VVGILTRQDLRAFNI 767 (783)
Q Consensus 753 vvGIITr~DLl~~~~ 767 (783)
++|+||++|+++...
T Consensus 208 LvGvITr~DIlk~~~ 222 (505)
T PLN02274 208 LVDLVTRTDVKRVKG 222 (505)
T ss_pred EEEEEEHHHHHHHhh
Confidence 999999999998654
No 95
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.12 E-value=6.9e-10 Score=100.73 Aligned_cols=109 Identities=22% Similarity=0.365 Sum_probs=89.0
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++++++++.+++++.+.|.+.+++.+||+|++ +++++|+++..++...+.+.. ..
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~----------~~~~~G~v~~~~l~~~~~~~~-~~-------------- 56 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGD----------LDNIIGVVHVKDLLRALAEGE-ED-------------- 56 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCC----------CceEEEEEEHHHHHHHHHcCC-Cc--------------
Confidence 57889999999999999998888999999863 168999999999977543211 00
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
..+.++| +++.++.+++++.+++++|.+.+.+++||+|+ +++++|+||+
T Consensus 57 -------------------------~~~~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvit~ 105 (111)
T cd04590 57 -------------------------LDLRDLL-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDE-----YGGTAGLVTL 105 (111)
T ss_pred -------------------------CCHHHHh-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEEC-----CCCEEEEeEH
Confidence 1122333 35678999999999999999999999999997 7899999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|+++
T Consensus 106 ~di~~ 110 (111)
T cd04590 106 EDILE 110 (111)
T ss_pred HHhhc
Confidence 99976
No 96
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.12 E-value=6.4e-10 Score=100.96 Aligned_cols=109 Identities=20% Similarity=0.298 Sum_probs=90.2
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.+++.+.+++++.+.+.+.++..+||+|+ ++++|+|+.+++...+......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~------------~~~~G~v~~~~l~~~~~~~~~~--------------- 54 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD------------GRLVGIVTDRDLRNRVVAEGLD--------------- 54 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC------------CEEEEEEEhHHHHHHHhccCCC---------------
Confidence 5678999999999999998888889999986 6999999999997543221100
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
...++.++|++++.++++++++.++++.|.+.+.+++||++ +++++|++|+
T Consensus 55 -----------------------~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~------~~~~~Giit~ 105 (111)
T cd04800 55 -----------------------PDTPVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVD------DGRLVGVISA 105 (111)
T ss_pred -----------------------ccCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeE------CCEEEEEEEH
Confidence 01235567778899999999999999999999999999998 3789999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|+++
T Consensus 106 ~di~~ 110 (111)
T cd04800 106 TDLLR 110 (111)
T ss_pred HHhhc
Confidence 99975
No 97
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.12 E-value=2.2e-10 Score=130.55 Aligned_cols=123 Identities=19% Similarity=0.238 Sum_probs=102.8
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhc-----CCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhc
Q 003966 587 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRN-----TTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKK 661 (783)
Q Consensus 587 ~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~-----t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~ 661 (783)
..-+++++|++ ++++++++++++++.+.+++ .+...+||+|++ ++++|+|+.+|++.. +
T Consensus 129 ~e~tvg~iMt~--~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~-----------~~l~GvV~l~dLl~a---~ 192 (449)
T TIGR00400 129 SDDSAGRIMTI--EYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNES-----------KHLKGVLSIRDLILA---K 192 (449)
T ss_pred CcchHHHhCcC--ceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCC-----------CeEEEEEEHHHHhcC---C
Confidence 45789999998 99999999999999999975 233567888876 899999999998431 0
Q ss_pred hhhhhhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEE
Q 003966 662 WFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLV 741 (783)
Q Consensus 662 ~f~~~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpV 741 (783)
+ ...++++|+++++++++++++.++.+.|++++...+||
T Consensus 193 -----~------------------------------------~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpV 231 (449)
T TIGR00400 193 -----P------------------------------------EEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPV 231 (449)
T ss_pred -----C------------------------------------CCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeE
Confidence 0 01356778888999999999999999999999999999
Q ss_pred eeccccCCCCcEEEEEehhhchhhHhhhhC
Q 003966 742 VPKYEAAGVSPVVGILTRQDLRAFNILTAF 771 (783)
Q Consensus 742 Vd~~~~~~~~~vvGIITr~DLl~~~~~~~~ 771 (783)
||+ +|+++|+||++|+++...++..
T Consensus 232 VD~-----~g~lvGiIt~~Dil~~l~~~~~ 256 (449)
T TIGR00400 232 VDN-----EGRLVGIVTVDDIIDVIQSEAT 256 (449)
T ss_pred EcC-----CCeEEEEEEHHHHHHHHHhhhH
Confidence 998 7899999999999987766543
No 98
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.11 E-value=7.1e-10 Score=99.64 Aligned_cols=111 Identities=26% Similarity=0.378 Sum_probs=92.5
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.+++.++++.++.+.+.+.+++.+||+|++ ++++|+++++|+...+.+.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~G~v~~~~l~~~~~~~~~~~-------------- 56 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD-----------GRLVGIVTERDLLRALAEGGLDP-------------- 56 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCC-----------CCEEEEEeHHHHHHHHHhccCCc--------------
Confidence 56788999999999999999888999999986 79999999999977554321000
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
...+.++|..++.++.+++++.++++.|.+.+..++||+|+ +++++|++|+
T Consensus 57 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~G~i~~ 107 (113)
T cd02205 57 ------------------------LVTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDD-----EGRLVGIVTR 107 (113)
T ss_pred ------------------------cccHHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcC-----CCcEEEEEEH
Confidence 01134566778889999999999999999999999999997 7999999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|+++
T Consensus 108 ~dl~~ 112 (113)
T cd02205 108 SDILR 112 (113)
T ss_pred HHhhc
Confidence 99976
No 99
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.11 E-value=9.1e-10 Score=100.11 Aligned_cols=110 Identities=22% Similarity=0.279 Sum_probs=90.1
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.+++++.++.++.+.|.+.+++.+||+|+ ++++|+++..|++..+.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------------~~~~G~v~~~dl~~~~~~~~~~~-------------- 55 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN------------EKPVGIITERDLVKKVVSRNLKP-------------- 55 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC------------CEEEEEEEHHHHHHHHhhccCCc--------------
Confidence 5678899999999999999888999999986 58999999999976443211000
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
....+.++|++.+.++.+++++.+++++|.+.+.+.+||+|+ + +++|+||+
T Consensus 56 -----------------------~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~-~~~Gvi~~ 106 (112)
T cd04802 56 -----------------------REVPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDD-----D-ELVGIVTT 106 (112)
T ss_pred -----------------------ccCCHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC-----C-EEEEEEEh
Confidence 012345667778889999999999999999999999999986 4 89999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|+++
T Consensus 107 ~di~~ 111 (112)
T cd04802 107 TDIVM 111 (112)
T ss_pred hhhhc
Confidence 99975
No 100
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.10 E-value=9.7e-10 Score=99.84 Aligned_cols=109 Identities=17% Similarity=0.227 Sum_probs=89.5
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
+.++++++++++++.+.|.+.+++.+||+|+ +++.|+++..+++..+.+....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~------------~~~~G~v~~~~l~~~~~~~~~~--------------- 54 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG------------DPRLGIVTRTDLLDAVLLDGLP--------------- 54 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC------------CeEEEEEEHHHHHHHHHcCCCC---------------
Confidence 4568899999999999999888889999886 5899999999997654321100
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
....+.++|++++..+++++++.+++++|.+.+.+.+||+| +++++|+||+
T Consensus 55 -----------------------~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~------~~~~~G~it~ 105 (111)
T cd04589 55 -----------------------SSTPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVRE------GGEVVGVLEQ 105 (111)
T ss_pred -----------------------CCCCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEee------CCEEEEEEEh
Confidence 01234566778888999999999999999999999999997 4789999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|+++
T Consensus 106 ~dl~~ 110 (111)
T cd04589 106 TDLLS 110 (111)
T ss_pred HHhhc
Confidence 99975
No 101
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.09 E-value=1.4e-09 Score=99.45 Aligned_cols=113 Identities=22% Similarity=0.301 Sum_probs=95.2
Q ss_pred cccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchh
Q 003966 593 ELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEE 672 (783)
Q Consensus 593 dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~ 672 (783)
++|.+ +++++.+++++.++...|.+++...+||+++ .+++|+++.+|+...+....-.
T Consensus 3 ~~~~~--~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~------------~~l~Giit~~di~~~~~~~~~~-------- 60 (117)
T COG0517 3 DIMTK--DVITVKPDTSVRDALLLMSENGVSAVPVVDD------------GKLVGIITERDILRALAAGGKR-------- 60 (117)
T ss_pred ccccC--CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC------------CEEEEEEEHHHHHHHHhccCCc--------
Confidence 44556 8899999999999999999999999999987 4899999999998765432100
Q ss_pred HHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHH-cCCCEEEEeeccccCCCC
Q 003966 673 WEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQ-VGLRHLLVVPKYEAAGVS 751 (783)
Q Consensus 673 ~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~-~glr~lpVVd~~~~~~~~ 751 (783)
...+.++|.+++.++.+++++.++.++|.+ .+.+++||+++ ++
T Consensus 61 -------------------------------~~~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~-----~~ 104 (117)
T COG0517 61 -------------------------------LLPVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDD-----DG 104 (117)
T ss_pred -------------------------------cccHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEEC-----CC
Confidence 003566777789999999999999999999 69999999997 65
Q ss_pred -cEEEEEehhhch
Q 003966 752 -PVVGILTRQDLR 763 (783)
Q Consensus 752 -~vvGIITr~DLl 763 (783)
+++|++|++|++
T Consensus 105 ~~lvGivt~~di~ 117 (117)
T COG0517 105 GKLVGIITLSDIL 117 (117)
T ss_pred CeEEEEEEHHHcC
Confidence 999999999974
No 102
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.09 E-value=4e-10 Score=119.89 Aligned_cols=114 Identities=17% Similarity=0.212 Sum_probs=97.2
Q ss_pred ccccccccccCCC-eeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhh
Q 003966 588 TLTVGELIDAKPP-VITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQE 666 (783)
Q Consensus 588 ~l~v~dvM~~~~~-vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~ 666 (783)
.++++|+|.+ + +.++++++++.++.+.|.+.+++.+||+|++ ++++|+|+.+|+...+.... .
T Consensus 154 ~~~v~~im~~--~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~-----------g~~~Givt~~dl~~~~~~~~---~ 217 (268)
T TIGR00393 154 LVKVKDLMQT--TDLPLIAPTTSFKDALLEMSEKRLGSAIVCDEN-----------NQLVGVFTDGDLRRALLGGG---S 217 (268)
T ss_pred hhhHHHHhCC--CCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCC-----------CCEEEEEEcHHHHHHHhcCC---c
Confidence 4799999998 7 8899999999999999999899999999976 89999999999976442210 0
Q ss_pred hccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccc
Q 003966 667 KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE 746 (783)
Q Consensus 667 ~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~ 746 (783)
...+++++|.+++.++.+++++.+++++|.+.+.+++||+|+
T Consensus 218 ------------------------------------~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-- 259 (268)
T TIGR00393 218 ------------------------------------LKSEVRDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDD-- 259 (268)
T ss_pred ------------------------------------ccCcHHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECC--
Confidence 012356778888889999999999999999999999999997
Q ss_pred cCCCCcEEEEEe
Q 003966 747 AAGVSPVVGILT 758 (783)
Q Consensus 747 ~~~~~~vvGIIT 758 (783)
+|+++|+|+
T Consensus 260 ---~g~l~GvI~ 268 (268)
T TIGR00393 260 ---HNKVLGVLH 268 (268)
T ss_pred ---CCeEEEEEC
Confidence 789999985
No 103
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.07 E-value=1e-09 Score=124.36 Aligned_cols=133 Identities=21% Similarity=0.325 Sum_probs=111.3
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhh
Q 003966 586 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 665 (783)
Q Consensus 586 l~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~ 665 (783)
+++.+|+++|+++.++..++.+.++.++.+.+.+++|+.+||++++ .+.++|+|..+||+..+.+..-
T Consensus 203 l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~----------~D~iiGiv~~Kdll~~~~~~~~-- 270 (429)
T COG1253 203 LDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGD----------LDNIIGIVHVKDLLRALLDGQS-- 270 (429)
T ss_pred cCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCC----------CCcEEEEEEHHHHHHHHhcCcc--
Confidence 6789999999999999999999999999999999999999999943 2789999999999876543210
Q ss_pred hhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeecc
Q 003966 666 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 745 (783)
Q Consensus 666 ~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~ 745 (783)
. .+....+ ++|+.|++++++.++++.|++.+.+...|+|+
T Consensus 271 ~--------------------------------------~~~~~~~-~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE- 310 (429)
T COG1253 271 D--------------------------------------LDLRVLV-RPPLFVPETLSLSDLLEEFREERTHMAIVVDE- 310 (429)
T ss_pred c--------------------------------------cchhhcc-cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEc-
Confidence 0 0111111 38889999999999999999999999999998
Q ss_pred ccCCCCcEEEEEehhhchhhHhhhhCCcc
Q 003966 746 EAAGVSPVVGILTRQDLRAFNILTAFPHL 774 (783)
Q Consensus 746 ~~~~~~~vvGIITr~DLl~~~~~~~~~~l 774 (783)
.|.+.|+||..|++++...+...+-
T Consensus 311 ----yG~~~GlVTleDIiEeIvGei~de~ 335 (429)
T COG1253 311 ----YGGVEGLVTLEDIIEEIVGEIPDEH 335 (429)
T ss_pred ----CCCeEEEeEHHHHHHHHhCCCcCcc
Confidence 7899999999999999887666443
No 104
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.07 E-value=1.2e-09 Score=98.29 Aligned_cols=100 Identities=17% Similarity=0.124 Sum_probs=85.2
Q ss_pred eEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhhhh
Q 003966 602 ITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSW 681 (783)
Q Consensus 602 v~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~~~ 681 (783)
+++++++++.++.+.+.+.+++.+||+|+ ++++|+++.+|+.....
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~------------~~~~G~v~~~~l~~~~~---------------------- 49 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY------------NKFLGAVYLKDIENATY---------------------- 49 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC------------CEEEEEEEHHHHhhhcc----------------------
Confidence 46789999999999999989999999986 68999999999854100
Q ss_pred HHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhh
Q 003966 682 VELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQD 761 (783)
Q Consensus 682 ~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~D 761 (783)
.++.++|.+.+.++++++++.++++.|.+.+.+.+||++ +++++|+||++|
T Consensus 50 -----------------------~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~------~~~~iGvit~~d 100 (104)
T cd04594 50 -----------------------GDVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD------DGKFKGIVTLDS 100 (104)
T ss_pred -----------------------cchhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE------CCEEEEEEEHHH
Confidence 013445667788999999999999999999999999997 578999999999
Q ss_pred chh
Q 003966 762 LRA 764 (783)
Q Consensus 762 Ll~ 764 (783)
+++
T Consensus 101 l~~ 103 (104)
T cd04594 101 ILD 103 (104)
T ss_pred hhc
Confidence 875
No 105
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.06 E-value=1e-09 Score=98.79 Aligned_cols=104 Identities=24% Similarity=0.398 Sum_probs=88.9
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.+++.+.+++++.+.+.+.+++.+||+|+ ++++|+++..+++.. . .
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~------------~~~~g~v~~~~l~~~----~----~------------ 50 (107)
T cd04610 3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDN------------GKVVGIVSARDLLGK----D----P------------ 50 (107)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeeeEeEC------------CEEEEEEEHHHhhcc----C----c------------
Confidence 6788999999999999998888889999976 699999999998531 0 0
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
..+++++|+..+.++.+++++.+++++|++.+.+.+||+++ +|+++|+||+
T Consensus 51 ------------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~g~~~Gvi~~ 101 (107)
T cd04610 51 ------------------------DETVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDE-----NNNLVGIITN 101 (107)
T ss_pred ------------------------cccHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECC-----CCeEEEEEEH
Confidence 01245667788899999999999999999999999999997 7899999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|+++
T Consensus 102 ~di~~ 106 (107)
T cd04610 102 TDVIR 106 (107)
T ss_pred HHhhc
Confidence 99985
No 106
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.06 E-value=5.9e-10 Score=101.09 Aligned_cols=102 Identities=24% Similarity=0.244 Sum_probs=84.6
Q ss_pred EcCcccHHHHHHHHhcCCC-----CeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhh
Q 003966 604 LSGIEKVSQIVDVLRNTTH-----NGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREK 678 (783)
Q Consensus 604 l~~~~~v~~~~~~L~~t~~-----~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~ 678 (783)
+.+++++.++.+.|+++++ ..+||+|++ ++++|+|+.++++.. . .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-----------~~~~G~v~~~~l~~~----~----~----------- 51 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEE-----------GRLLGVVSLRDLLLA----D----P----------- 51 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCC-----------CCEEEEEEHHHHhcC----C----C-----------
Confidence 5678899999999987763 679999876 799999999888431 0 0
Q ss_pred hhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEe
Q 003966 679 FSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILT 758 (783)
Q Consensus 679 ~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIIT 758 (783)
...+.++|++++.++.+++++.++++.|.+.+.+++||+|+ +++++|+||
T Consensus 52 -------------------------~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvit 101 (109)
T cd04606 52 -------------------------DTPVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDE-----EGRLVGIIT 101 (109)
T ss_pred -------------------------cchHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECC-----CCcEEEEEE
Confidence 01245566778889999999999999999999999999997 789999999
Q ss_pred hhhchhh
Q 003966 759 RQDLRAF 765 (783)
Q Consensus 759 r~DLl~~ 765 (783)
++|+++.
T Consensus 102 ~~dll~~ 108 (109)
T cd04606 102 VDDVIDV 108 (109)
T ss_pred hHHhhhh
Confidence 9999874
No 107
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.05 E-value=1.4e-09 Score=100.16 Aligned_cols=119 Identities=23% Similarity=0.324 Sum_probs=92.7
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.+++++.++.++.+.+.+++++.+||+|++ ++++|+++.+++........ .....
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~~l~~~~~~~~-~~~~~----------- 58 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEE-----------GRLVGIVTDRDLRDASPSPF-TTLSE----------- 58 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCC-----------CcEEEEEEHHHHHHHhhhhc-ccchh-----------
Confidence 56788999999999999999999999999986 89999999999965432110 00000
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
.+. ......+++++|++.+.++.+++++.+++++|.+.+..++||++ +++++|++|+
T Consensus 59 ------------~~~-----~~~~~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~------~~~~~Gvv~~ 115 (121)
T cd04584 59 ------------HEL-----YLLLKMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVE------DGRLVGIITE 115 (121)
T ss_pred ------------hhh-----hhhcCcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEee------CCEEEEEEEH
Confidence 000 00012346677888899999999999999999999999999997 4789999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|+++
T Consensus 116 ~di~~ 120 (121)
T cd04584 116 TDLLR 120 (121)
T ss_pred HHhhc
Confidence 99976
No 108
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.04 E-value=1.4e-09 Score=100.37 Aligned_cols=120 Identities=23% Similarity=0.308 Sum_probs=92.6
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.++++++++.++.+.|.+.++..+||+|+ ++++|+++++++...+.... ..+.. .
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~------------~~~~G~v~~~~l~~~~~~~~-~~~~~---------~- 58 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG------------GKLVGIVTEKDIADALRSFR-PLVRD---------R- 58 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC------------CEEEEEEchHHHHHhhhhhh-hcccc---------h-
Confidence 5678999999999999999888899999986 79999999999976543211 00000 0
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
.. +......++.++|++++.++.+++++.+++++|.+.+.+++||+| +++++|+||+
T Consensus 59 ---~~--------------~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~------~~~~~Gvi~~ 115 (121)
T cd04633 59 ---HQ--------------ERRIRNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVD------DGKLVGIVTR 115 (121)
T ss_pred ---hh--------------hhhhhccCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEE------CCEEEEEEEH
Confidence 00 000012345667888899999999999999999999999999998 3789999999
Q ss_pred hhchhh
Q 003966 760 QDLRAF 765 (783)
Q Consensus 760 ~DLl~~ 765 (783)
+|++++
T Consensus 116 ~dl~~~ 121 (121)
T cd04633 116 TDILRY 121 (121)
T ss_pred HHhhcC
Confidence 999863
No 109
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.04 E-value=2.3e-09 Score=102.78 Aligned_cols=136 Identities=23% Similarity=0.288 Sum_probs=96.3
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhh-----ccchhHH
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK-----RRTEEWE 674 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~-----~~~~~~~ 674 (783)
+++++++++++.++.+.|++++++.+||+|+ ++++|++++.+++..+.......+. .......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~------------~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG------------GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELP 69 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC------------CeEEEEecHHHHHHHHHhccCccccccCCcceeeecc
Confidence 6778999999999999999999999999986 6899999999998766532210000 0000000
Q ss_pred HhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEE
Q 003966 675 VREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVV 754 (783)
Q Consensus 675 ~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vv 754 (783)
..+...+.+.... .++ ....++.++|++.+.++.+++++.+++++|.+.+.+++||++ +++++
T Consensus 70 ~~~~~~~~~~~~~----------~~~-~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~------~~~~~ 132 (143)
T cd04634 70 LREFINWEETKRA----------LTD-AGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVE------DGRLV 132 (143)
T ss_pred chheeehHHHHHH----------HHH-HhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE------CCEEE
Confidence 0000111111100 000 012456778889999999999999999999999999999998 37899
Q ss_pred EEEehhhchh
Q 003966 755 GILTRQDLRA 764 (783)
Q Consensus 755 GIITr~DLl~ 764 (783)
|+||++|+++
T Consensus 133 Gvvt~~dl~~ 142 (143)
T cd04634 133 GIVTRGDIIE 142 (143)
T ss_pred EEEEHHHhhc
Confidence 9999999875
No 110
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.04 E-value=1.7e-09 Score=99.48 Aligned_cols=113 Identities=20% Similarity=0.260 Sum_probs=89.6
Q ss_pred CeeEEcCcccHHHHHHHHhcCC-CCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTT-HNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREK 678 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~-~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~ 678 (783)
++.++++++++.++.+.++..+ ++.+||+|+ ++++|+|+.+++...+.+.. ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~------------~~~~G~v~~~~l~~~~~~~~-~~------------- 55 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD------------GRPVGLIMREALMELLSTPY-GR------------- 55 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC------------CeeEEEEEHHHHHHHHhchh-hH-------------
Confidence 5567899999999999998776 889999987 68999999999976543210 00
Q ss_pred hhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEE---EEeeccccCCCCcEEE
Q 003966 679 FSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHL---LVVPKYEAAGVSPVVG 755 (783)
Q Consensus 679 ~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~l---pVVd~~~~~~~~~vvG 755 (783)
+. ....++.++|++++.++.+++++.+++++|.+.+.+++ +||++ +++++|
T Consensus 56 ----~~-----------------~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-----~~~~~G 109 (119)
T cd04598 56 ----AL-----------------YGKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTE-----EGRYLG 109 (119)
T ss_pred ----HH-----------------HcCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEee-----CCeEEE
Confidence 00 00124667788899999999999999999999987544 68887 789999
Q ss_pred EEehhhchh
Q 003966 756 ILTRQDLRA 764 (783)
Q Consensus 756 IITr~DLl~ 764 (783)
+||++|+++
T Consensus 110 vvs~~di~~ 118 (119)
T cd04598 110 IGTVKDLLR 118 (119)
T ss_pred EEEHHHHhc
Confidence 999999975
No 111
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=99.02 E-value=2.6e-09 Score=118.28 Aligned_cols=185 Identities=23% Similarity=0.254 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhccC--CCCCCHH
Q 003966 88 KWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPT--AAGPGIP 165 (783)
Q Consensus 88 ~w~~~~liGv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~--a~GsGip 165 (783)
.+...+++|+++|+++.+|+....++.+++.+.. ++.... ....++.+++.+ ++.++.|+ ..|.|-.
T Consensus 163 ~~~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~-------~~~~~~---~l~~~i~gl~~g-~l~~~~p~~~~~g~G~~ 231 (355)
T PF00654_consen 163 ELPLFLLLGIICGLLGALFNRLLRWLRKFFRKLK-------RLKIPP---ILRPVIGGLVIG-LLAFFFPEGSVLGSGYE 231 (355)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TTCHHH---HHHHHHHHHHHH-HHHHSSGG-SGSSSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------ccccch---HHHHHHHHHHHH-HHHHHHhhhcccCCcHH
Confidence 4567899999999999999999988887544331 010110 112333444444 44467788 9999988
Q ss_pred HHHHHHhCCC--CCCcchhHHHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHhhcCCCCcccchhhhhhccCCc---
Q 003966 166 EIKAYLNGVD--TPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNND--- 240 (783)
Q Consensus 166 ev~~~lng~~--~~~~l~~~tl~~K~~~~~~sv~sG~s~G~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~--- 240 (783)
.++..+++.. ..-..-.-.++.|++.+.+++++|.+.|.-.|+.-+|+++|..++. ++..+-.+
T Consensus 232 ~i~~ll~~~~~~~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~~~-----------~~~~~~~~~~~ 300 (355)
T PF00654_consen 232 LIQSLLSGSPPWFSLGSLLLLFLLKFLATALTLGSGAPGGIFFPSLFIGAALGRLFGA-----------LLGSFFPGISS 300 (355)
T ss_dssp HHHHHCTT----S-HHHHHHHHHHHHHHHHHHHHTT-BSBSHHHHHHHHHHHHHHHHH-----------HHHHH-GGG-T
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhcCccCCCCEEccHHHHHHHHHHHHHH-----------HHHhhCCCcCC
Confidence 8988887631 1112223447899999999999999999999999999999999997 33332111
Q ss_pred chhhhHHHhhhhhhhhhhccCcccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHH
Q 003966 241 RDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLR 297 (783)
Q Consensus 241 ~~~r~lv~~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~ 297 (783)
.+...+..+|++|..+++.|+|+..+++.+|.+.+ .....+.++++.++..+.+
T Consensus 301 ~~~~~~al~G~~a~~~a~~~~Plt~~vl~~Eltg~---~~~~~p~lia~~~a~~v~~ 354 (355)
T PF00654_consen 301 VDPGVYALVGMAAFLAAVTRAPLTAIVLVLELTGD---FQLLLPLLIAVAVAYLVAR 354 (355)
T ss_dssp -SHHHHHHHHTTHHHHHHCS-HHHHHHHHHHHH-----GGGHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHhC
Confidence 14678999999999999999999999999999874 3455566666666655543
No 112
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.00 E-value=3.1e-09 Score=95.76 Aligned_cols=104 Identities=27% Similarity=0.357 Sum_probs=87.4
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.++++++++.++.+.+.+.+++.+||+|++ ++++|+++++++... .. +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~g~v~~~~l~~~---~~---~------------- 51 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKS-----------GELVGIITRKDLLRN---PE---E------------- 51 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCC-----------CcEEEEEEHHHHHhc---cc---c-------------
Confidence 57788999999999999998889999999886 789999999998531 00 0
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
..+.++|++.+.++.+++++.++.++|++.+.+.+||+|+ ++++|+||+
T Consensus 52 -------------------------~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~------~~~~G~it~ 100 (106)
T cd04638 52 -------------------------EQLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD------GKLVGIVTV 100 (106)
T ss_pred -------------------------chHHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC------CEEEEEEEH
Confidence 0134556678889999999999999999999999999984 589999999
Q ss_pred hhchh
Q 003966 760 QDLRA 764 (783)
Q Consensus 760 ~DLl~ 764 (783)
+|+++
T Consensus 101 ~d~~~ 105 (106)
T cd04638 101 ADIVR 105 (106)
T ss_pred HHhhc
Confidence 99875
No 113
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=98.97 E-value=5.4e-09 Score=119.48 Aligned_cols=187 Identities=16% Similarity=0.160 Sum_probs=120.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhchhhhH----HHHHHHHHHHHhhhh-ccccccccCC
Q 003966 329 HVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLI-----NQKGKMHKL----LLALSVSVFTSVCQY-CLPFLADCKA 398 (783)
Q Consensus 329 ~~~~l~~~i~lGv~~Gllg~~f~~l~~~~~~~~~~~-----~~~~~~~~~----~~~~~~~~~~~~~~~-~~p~~~~c~~ 398 (783)
....+...+++|+++|+++.+|.++..++.+++... .......++ ..+++.+++.+.+.. +.|..
T Consensus 29 ~~~~w~l~ilvGi~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~p~a----- 103 (466)
T cd03685 29 EFLKWIICLLIGIFTGLVAYFIDLAVENLAGLKFLVVKNYIEKGRLFTAFLVYLGLNLVLVLVAALLVAYIAPTA----- 103 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCccc-----
Confidence 345566779999999999999999999988775322 111111111 233344455554433 33432
Q ss_pred CCCCCCCCCCCCCCCCCcccccCCCCCchhhHHHhhcCcHHHHHHhhcCCC-CCCCchhHHHHHHHHHHHHHHHhhcCcc
Q 003966 399 CDPSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNT-PTEFQPSSILIFFILYCILGLITFGIAV 477 (783)
Q Consensus 399 ~~~~~~~~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~-~~~~~~~~l~~~~~~k~~lt~~t~g~g~ 477 (783)
.| ++...++...+... ++..++. -++.|++.+.+++|+|.
T Consensus 104 -----------~G------------------------sGip~v~~~l~g~~~~~~l~~r----~~~~K~i~~~l~vgsG~ 144 (466)
T cd03685 104 -----------AG------------------------SGIPEVKGYLNGVKIPHILRLK----TLLVKIVGVILSVSGGL 144 (466)
T ss_pred -----------CC------------------------CCHHHHHHHHcCcCccccchHH----HHHHHHHHHHHHHhcCC
Confidence 11 11122333333211 1111222 23579999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHHHhh-----------c-cCCcchHHHHHHHhhhhhhhhhchhHHHHHHHHHHhC-C--ch
Q 003966 478 PSGLFLPIILMGSAYGRLLGMAMG-----------S-YTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTN-N--LL 542 (783)
Q Consensus 478 ~gG~f~P~l~iGa~~G~l~g~~~~-----------~-~~~~~~~~~alvGaaa~l~g~~r~pis~~vi~~ElTg-~--~~ 542 (783)
|.|.+.|++.+||+.|..+++... . ....+-..+..+||||.++++.++|++.+++.+|.+. . .+
T Consensus 145 s~GrEGP~v~iGa~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~r~li~~GaAAGlaaaF~APl~G~lFa~E~l~~~~~~~ 224 (466)
T cd03685 145 ALGKEGPMIHIGACIAAGLSQGGSTSLRLDFRWFRYFRNDRDKRDFVTCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQA 224 (466)
T ss_pred CCCCCCCcchHHHHHHHHHhhccccccccchhhhhhccCHHHHHHHHHHHhhcchhhccCCCcceeeeeeehhhhhcchh
Confidence 999999999999999999997431 1 1224556789999999999999999999999999875 2 23
Q ss_pred hHHHHHHHHHHHHHHHh
Q 003966 543 LLPITMIVLLIAKTVGD 559 (783)
Q Consensus 543 ~l~pimia~~ia~~v~~ 559 (783)
...+.++++++|..+++
T Consensus 225 ~~~~~l~~s~ias~va~ 241 (466)
T cd03685 225 LTWRTFFSSMIVTFTLN 241 (466)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555555554
No 114
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.96 E-value=2.4e-09 Score=113.31 Aligned_cols=132 Identities=20% Similarity=0.291 Sum_probs=112.5
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhh
Q 003966 586 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 665 (783)
Q Consensus 586 l~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~ 665 (783)
+++++|.|+|.++.++..+..+++.+++++.+.++.|+.+||..++ -+..+|++..+|++++|.++.-
T Consensus 197 Le~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~----------~DnIiGvlh~r~llr~l~e~~~-- 264 (423)
T COG4536 197 LENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDD----------LDNIIGVLHVRDLLRLLNEKNE-- 264 (423)
T ss_pred cccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCC----------hhHhhhhhhHHHHHHHhhccCc--
Confidence 6799999999998899999999999999999999999999999774 1569999999999998876540
Q ss_pred hhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeecc
Q 003966 666 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 745 (783)
Q Consensus 666 ~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~ 745 (783)
++-.|+.+ . -..|++|++++++.+-+..|++.+-|.-.|||+
T Consensus 265 -------------~~k~d~~~-----------------------~-a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDE- 306 (423)
T COG4536 265 -------------FTKEDILR-----------------------A-ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDE- 306 (423)
T ss_pred -------------ccHhHHHH-----------------------H-hcCCeecCCCCcHHHHHHHHHHhcceEEEEEec-
Confidence 11122221 1 167899999999999999999999999999999
Q ss_pred ccCCCCcEEEEEehhhchhhHhhhhC
Q 003966 746 EAAGVSPVVGILTRQDLRAFNILTAF 771 (783)
Q Consensus 746 ~~~~~~~vvGIITr~DLl~~~~~~~~ 771 (783)
.|.+.|+||..|++++...+..
T Consensus 307 ----YG~i~GLVTLEDIlEEIVGdft 328 (423)
T COG4536 307 ----YGDIQGLVTLEDILEEIVGDFT 328 (423)
T ss_pred ----cCcEEeeeeHHHHHHHHhcccc
Confidence 7899999999999998876544
No 115
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=98.96 E-value=1.6e-08 Score=115.13 Aligned_cols=190 Identities=15% Similarity=0.126 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHH
Q 003966 88 KWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEI 167 (783)
Q Consensus 88 ~w~~~~liGv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev 167 (783)
.+...+++|+++|+++.+|+....++++++.+.. .....++. .++.+++.+.+ .++.|+..|+|-..+
T Consensus 206 ~l~~~i~lGi~~Gl~g~lf~~~~~~~~~~~~~~~--------~~~~~~~~---~~l~~l~~~~l-~~~~p~~~~~g~~~i 273 (445)
T cd03684 206 ELIPFILLGIFGGLYGAFFIKANIKWARFRKKSL--------LKRYPVLE---VLLVALITALI-SFPNPYTRLDMTELL 273 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------cchhHHHH---HHHHHHHHHHH-HhChHHHccchhhHH
Confidence 4557899999999999999999988877654331 00011111 22233333433 466799999986667
Q ss_pred HHHHhCCCC---------------CC-cc----hhHHHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHhhcCCCCcc
Q 003966 168 KAYLNGVDT---------------PN-MF----GATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNH 227 (783)
Q Consensus 168 ~~~lng~~~---------------~~-~l----~~~tl~~K~~~~~~sv~sG~s~G~EGP~vhiGa~igs~l~~~~s~~~ 227 (783)
+..+++... .. .. -.-.++.|++.+.+++++|.+.|.-.|+.-+||++|..++...
T Consensus 274 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~K~~~t~lt~gsG~~GG~f~P~l~iGA~~G~~~g~~~---- 349 (445)
T cd03684 274 ELLFNECEPGDDNSLCCYRDPPAGDGVYKALWSLLLALIIKLLLTIFTFGIKVPAGIFVPSMAVGALFGRIVGILV---- 349 (445)
T ss_pred HHHHhcCCCcccccccccccccCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcceeHHHHHHHHHHhHHHHHHH----
Confidence 766553110 00 11 1234689999999999999999999999999999999998621
Q ss_pred cchhhhh---h---ccC------CcchhhhHHHhhhhhhhhhhccCcccceeeeeeecchhhhhhhHHHHHHHHHHHHHH
Q 003966 228 RIKWQWL---R---YFN------NDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVV 295 (783)
Q Consensus 228 ~l~~~~~---~---~f~------~~~~~r~lv~~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v 295 (783)
+ .|. + +|. .+.+--.++.+|+||-+|++.|+|+.++++.+|.+.+ ...+.+.+.++.+|..+
T Consensus 350 ~---~~~~~~p~~~~~~~~~~~~~~~~~~~~alvGmaa~~a~~~raPlt~ivlv~ElTg~---~~~l~pl~ia~~iA~~v 423 (445)
T cd03684 350 E---QLAYSYPDSIFFACCTAGPSCITPGLYAMVGAAAFLGGVTRMTVSLVVIMFELTGA---LNYILPLMIAVMVSKWV 423 (445)
T ss_pred H---HHHhhCCcccccccccCCCCccCchHHHHHHHHHHhcchhccchhhhheeeeccCC---cccHHHHHHHHHHHHHH
Confidence 0 011 0 010 1123457899999999999999999999999999975 35667777777777777
Q ss_pred HHHH
Q 003966 296 LRAF 299 (783)
Q Consensus 296 ~~~~ 299 (783)
.+.+
T Consensus 424 s~~~ 427 (445)
T cd03684 424 ADAI 427 (445)
T ss_pred HHHh
Confidence 7643
No 116
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=98.93 E-value=2.7e-09 Score=118.32 Aligned_cols=125 Identities=19% Similarity=0.245 Sum_probs=107.8
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhh
Q 003966 586 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 665 (783)
Q Consensus 586 l~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~ 665 (783)
+...+++++|+. |.+++++..++.++.+.|.+.+.+...|++++ +.+.|||+++|+......+
T Consensus 146 ~~~trv~~~~~~--~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~-----------~~~~GIvT~~dl~~~v~~~---- 208 (610)
T COG2905 146 FILTRVGEVKTL--PAVTVSPQASIQDAARKMKDEGVSSLVVLDDS-----------GPLLGIVTRKDLRSRVIAD---- 208 (610)
T ss_pred HHHHHHHHHhcC--CCcccCccCcHHHHHHHHHhcCCCeEEEEcCC-----------CCccceeehHHHHHHHHhc----
Confidence 344689999999 99999999999999999999999988888876 8899999999997643221
Q ss_pred hhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeecc
Q 003966 666 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 745 (783)
Q Consensus 666 ~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~ 745 (783)
.++....++++|+.++++|..++.+-+|+-+|.+.+++|+||++
T Consensus 209 ----------------------------------g~~~~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e-- 252 (610)
T COG2905 209 ----------------------------------GRSKTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-- 252 (610)
T ss_pred ----------------------------------CCCcccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeec--
Confidence 11123467899999999999999999999999999999999997
Q ss_pred ccCCCCcEEEEEehhhchhhHh
Q 003966 746 EAAGVSPVVGILTRQDLRAFNI 767 (783)
Q Consensus 746 ~~~~~~~vvGIITr~DLl~~~~ 767 (783)
+|+++||||..||++...
T Consensus 253 ----~gq~~Gilt~~dIl~l~s 270 (610)
T COG2905 253 ----DGQPLGILTLTDILRLFS 270 (610)
T ss_pred ----CCeeeEEeeHHHHHHhhC
Confidence 589999999999998654
No 117
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=98.91 E-value=1.8e-08 Score=114.26 Aligned_cols=180 Identities=18% Similarity=0.227 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHH
Q 003966 90 SLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEIKA 169 (783)
Q Consensus 90 ~~~~liGv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~ 169 (783)
...+++|++.|+.+.++...+....+++. + ...+..+ -+.+.+.+.+ +..++.|+..|.|...+..
T Consensus 236 ~~~~~lGii~G~~g~~~~~~~~~~~~~~~--------~--~~~~~~~---~~~~~g~l~g-~~~l~~P~~lg~G~~~~~~ 301 (443)
T COG0038 236 LLYLVLGIIAGLFGVLLSRLLALSRRFFR--------R--LPLPPLL---RPALGGLLVG-ALGLLFPEVLGNGYGLIQL 301 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------c--CcchHHH---HHHHHHHHHH-HHHHhchhhhCCCccHHHH
Confidence 46789999999999887777644422211 1 1111111 1222333333 4457789999999888888
Q ss_pred HHhCCCCCCcc-hhHHHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHhhcCCCCcccchhhhhhccC-CcchhhhHH
Q 003966 170 YLNGVDTPNMF-GATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFN-NDRDRRDLI 247 (783)
Q Consensus 170 ~lng~~~~~~l-~~~tl~~K~~~~~~sv~sG~s~G~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~-~~~~~r~lv 247 (783)
..++.. ... ..-.++.|++.+.++++||.+.|.--|+.-+||++|..+++. +-..+. +..+.-.+.
T Consensus 302 ~~~~~~--~~~~l~~l~~~K~l~t~~s~gSG~~GGif~Psl~iGa~lG~~~g~~----------~~~~~~~~~~~~~~~a 369 (443)
T COG0038 302 ALAGEG--GLLVLLLLFLLKLLATLLSYGSGAPGGIFAPSLFIGAALGLAFGAL----------LGLLFPPSILEPGLFA 369 (443)
T ss_pred HHccCc--cHHHHHHHHHHHHHHHHHHHhcCCCcceehHHHHHHHHHHHHHHHH----------HHhhcCccccchHHHH
Confidence 777621 122 356789999999999999999999999999999999999972 111111 133455799
Q ss_pred HhhhhhhhhhhccCcccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHH
Q 003966 248 TCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRA 298 (783)
Q Consensus 248 ~~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~ 298 (783)
.+|++|-++++-|+|++++++++|.+..+ ......+.++.+++.+.+.
T Consensus 370 l~Gm~a~la~~~~aPlta~vlv~EmTg~~---~~~l~ll~a~~ia~~~~~~ 417 (443)
T COG0038 370 LLGMAAFLAATTRAPLTAIVLVLEMTGNY---QLLLPLLIACLIAYLVSRL 417 (443)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhCCc---chHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999764 5666777777777777764
No 118
>PRK03655 putative ion channel protein; Provisional
Probab=98.90 E-value=2.4e-08 Score=112.19 Aligned_cols=172 Identities=13% Similarity=0.084 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHH
Q 003966 88 KWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEI 167 (783)
Q Consensus 88 ~w~~~~liGv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev 167 (783)
.|...+++|++.|+++.+|+......+++.... ++ +++. ..+.+++.+.+.....|...|+|-.++
T Consensus 222 ~~~~~l~lgi~~gl~G~lf~~~~~~~~~~~~~~------~~----p~~~----~~lgGl~vg~l~l~~~~~~~g~Gy~~i 287 (414)
T PRK03655 222 DILSGAIVAAIAIAAGMVAVWCLPRLHALMHRL------KN----PVLV----LGIGGFILGILGVIGGPLTLFKGLDEM 287 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cc----chHH----HHHHHHHHHHHHHHhCCccccCCHHHH
Confidence 345678899999999999987766655432211 11 1111 233444555555444688899999999
Q ss_pred HHHHhCCCCCCcchhHHHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHhhcCCCCcccchhhhhhccCCcchhhhHH
Q 003966 168 KAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLI 247 (783)
Q Consensus 168 ~~~lng~~~~~~l~~~tl~~K~~~~~~sv~sG~s~G~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv 247 (783)
+..+++.+.+-..-.-..+.|++.+.+|+++|.+.|.-.|+.-+||++|+.+++ ++ .+.+....+
T Consensus 288 ~~~~~~~~~~~~~ll~l~l~K~lat~ls~~sG~~GGiF~PsL~iGA~~G~~~~~-----------l~----p~~~~~~~v 352 (414)
T PRK03655 288 QQMAANQAFSASDYFLLAVVKLAALVVAAASGFRGGRIFPAVFVGVALGLMLHA-----------HV----PAVPAAITV 352 (414)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHHHHHHccCCCCceehHHHHHHHHHHHHHHH-----------hc----cCCChHHHH
Confidence 988765222211111246799999999999999999999999999999999987 22 234567789
Q ss_pred Hhhhhhhhhhhcc----CcccceeeeeeecchhhhhhhHHHHHHHHHHHHHHH
Q 003966 248 TCGSSSGVCAAFR----APVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVL 296 (783)
Q Consensus 248 ~~GaAAGvaaaF~----APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~ 296 (783)
+||++|-++++-+ +|+.+++..+|.+ ..+.+.++++++++.
T Consensus 353 ~~~m~a~la~vtr~p~~sp~ta~viv~em~--------~~~l~~~~~~~~~~~ 397 (414)
T PRK03655 353 SCAILGIVLVVTRDGWLSLFMAAVVVPDTT--------LLPLLCIVMLPAWLL 397 (414)
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHHhcch--------HHHHHHHHHHHHHHH
Confidence 9999999999999 6999999999987 334455555555543
No 119
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.81 E-value=2.2e-08 Score=95.00 Aligned_cols=116 Identities=13% Similarity=0.103 Sum_probs=79.7
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++.++++++++.++++.|.+.+.+.+||+|++ ++++|+|+..|++..+............+-.. .+..
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~-----------g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~-~~~~ 69 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSD-----------DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQ-TNTC 69 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCC-----------CeEEEEEEHHHHHHHHhhccccccccchhhcc-cccc
Confidence 57889999999999999998889999999986 89999999999988664322111000000000 0000
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeec
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK 744 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~ 744 (783)
...+++. ...+.+.|..++.++.+++++.+|+++|.+.+.+++||+|+
T Consensus 70 ~v~~i~~-----------------~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~ 117 (133)
T cd04592 70 LVSSVCT-----------------KGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR 117 (133)
T ss_pred cHHHHhh-----------------hhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence 0000000 00122334567889999999999999999999999999986
No 120
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=98.80 E-value=4.7e-08 Score=110.43 Aligned_cols=100 Identities=19% Similarity=0.175 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHHhhcc------------CCcchHHHHHHHhhhhhhhhhchhHH
Q 003966 462 FILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY------------TNIDQGLYAVLGAASLMAGSMRMTVS 529 (783)
Q Consensus 462 ~~~k~~lt~~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~~------------~~~~~~~~alvGaaa~l~g~~r~pis 529 (783)
++.|++.+.+++|+|.|.|...|+..+||+.|..+++.+... ...+...+..+|+||.++++.++|++
T Consensus 88 ~~~K~i~~~l~igsG~svGrEGP~V~iGa~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~r~ll~aGaaAGlaAaF~APia 167 (416)
T cd01036 88 LIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQGRSRTLGCHVHLFQLFRNPRDRRDFLVAGAAAGVASAFGAPIG 167 (416)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccchhhhccCHHHHHHHHHHHhhcchhhccCCcce
Confidence 457999999999999999999999999999999999976421 23455678999999999999999999
Q ss_pred HHHHHHHHhC-Cc--hhHHHHHHHHHHHHHHHhhc
Q 003966 530 LCVIFLELTN-NL--LLLPITMIVLLIAKTVGDSF 561 (783)
Q Consensus 530 ~~vi~~ElTg-~~--~~l~pimia~~ia~~v~~~~ 561 (783)
.+++.+|.+. ++ ..+.++++++++|..+.+.+
T Consensus 168 GvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~ 202 (416)
T cd01036 168 GLLFVLEEVSTFFPVRLAWRVFFAALVSAFVIQIY 202 (416)
T ss_pred eeeeeeHHhhccccHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999874 33 35788889999999888765
No 121
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.78 E-value=1.1e-08 Score=101.74 Aligned_cols=132 Identities=22% Similarity=0.343 Sum_probs=110.4
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhh
Q 003966 587 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQE 666 (783)
Q Consensus 587 ~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~ 666 (783)
..++|+|+|.++...++++...++.+++..+.++.|+.|||+.++ .+.+.|++..+||+..+....
T Consensus 65 adl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~ed----------kD~v~GIL~AKDLL~~~~~~~---- 130 (293)
T COG4535 65 ADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED----------KDHVEGILLAKDLLPFMRSDA---- 130 (293)
T ss_pred HHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCC----------chhhhhhhhHHHHHHHhcCCc----
Confidence 578999999998889999999999999999999999999999875 278999999999988765421
Q ss_pred hccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccc
Q 003966 667 KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE 746 (783)
Q Consensus 667 ~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~ 746 (783)
+. .|++++. ++...|+|+-.+.+.++-||....+...|||+
T Consensus 131 ----------~~--------------------------F~i~~lL-RPav~VPESKrvd~lLkeFR~~RnHMAIViDE-- 171 (293)
T COG4535 131 ----------EP--------------------------FDIKELL-RPAVVVPESKRVDRLLKEFRSQRNHMAIVIDE-- 171 (293)
T ss_pred ----------cc--------------------------ccHHHhc-ccceecccchhHHHHHHHHHhhcCceEEEEec--
Confidence 01 1233332 56668999999999999999999999999998
Q ss_pred cCCCCcEEEEEehhhchhhHhhhhCCcc
Q 003966 747 AAGVSPVVGILTRQDLRAFNILTAFPHL 774 (783)
Q Consensus 747 ~~~~~~vvGIITr~DLl~~~~~~~~~~l 774 (783)
-|-+.|.||-.|+++....+...+.
T Consensus 172 ---fGgVsGLVTIEDiLEqIVGdIEDE~ 196 (293)
T COG4535 172 ---FGGVSGLVTIEDILEQIVGDIEDEY 196 (293)
T ss_pred ---cCCeeeeEEHHHHHHHHhccccccc
Confidence 7889999999999998876665543
No 122
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.74 E-value=2e-08 Score=112.43 Aligned_cols=123 Identities=22% Similarity=0.228 Sum_probs=104.1
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcC-----CCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchh
Q 003966 589 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNT-----THNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWF 663 (783)
Q Consensus 589 l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t-----~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f 663 (783)
-+++.+|+. +.++++++.|++++++.+++. ....+.|+|++ ++++|+|+.++|+. .+
T Consensus 132 ~taG~~Mt~--e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~-----------~~L~Gvvsl~~Ll~---a~-- 193 (451)
T COG2239 132 DTAGRIMTT--EFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEK-----------GKLLGVVSLRDLLT---AE-- 193 (451)
T ss_pred hhhhcccee--eeEEeccCcCHHHHHHHHHHhcccccccceEEEECCc-----------cceEEEeeHHHHhc---CC--
Confidence 478999999 999999999999999999843 45678899987 89999999998853 10
Q ss_pred hhhhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEee
Q 003966 664 LQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVP 743 (783)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd 743 (783)
+ ...+.++|++.+++|++++..+++.++|+++++-++||||
T Consensus 194 ---~------------------------------------~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd 234 (451)
T COG2239 194 ---P------------------------------------DELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVD 234 (451)
T ss_pred ---c------------------------------------HhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceEC
Confidence 0 0135677888899999999999999999999999999999
Q ss_pred ccccCCCCcEEEEEehhhchhhHhhhhCCc
Q 003966 744 KYEAAGVSPVVGILTRQDLRAFNILTAFPH 773 (783)
Q Consensus 744 ~~~~~~~~~vvGIITr~DLl~~~~~~~~~~ 773 (783)
+ +++++|+||-.|+++...++....
T Consensus 235 ~-----~~~LiG~itiDDiidvi~eEa~eD 259 (451)
T COG2239 235 E-----DNRLIGIITIDDIIDVIEEEATED 259 (451)
T ss_pred C-----CCceeeeeeHHHHHHHHHHHHHHH
Confidence 8 899999999999998776654443
No 123
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=98.73 E-value=1.1e-07 Score=107.64 Aligned_cols=183 Identities=13% Similarity=0.136 Sum_probs=122.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---chhh----hHHHHHHHHHHHHhhh-hccccccccCCCCCCCCC
Q 003966 334 IPVTLIGIIGGILGGLYNHILHKVLRLYNLINQK---GKMH----KLLLALSVSVFTSVCQ-YCLPFLADCKACDPSFPE 405 (783)
Q Consensus 334 ~~~i~lGv~~Gllg~~f~~l~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~-~~~p~~~~c~~~~~~~~~ 405 (783)
...+++|++.|+++.+|....++..+++..+... .++. .++.+++.+++.+.+. ++.|..
T Consensus 3 ~~~~l~gv~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~p~a------------ 70 (426)
T cd03683 3 LFLALLGILMALISIAMDFAVEKLLNARRWLYSLLTGNSLLQYLVWVAYPVALVLFSALFCKYISPQA------------ 70 (426)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcc------------
Confidence 4567899999999999999999888777544321 1111 2333444444444433 234433
Q ss_pred CCCCCCCCCCcccccCCCCCchhhHHHhhcCcHHHHHHhhcCC-CCCCCchhHHHHHHHHHHHHHHHhhcCccccccchH
Q 003966 406 TCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSN-TPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLP 484 (783)
Q Consensus 406 ~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~-~~~~~~~~~l~~~~~~k~~lt~~t~g~g~~gG~f~P 484 (783)
..+| + ..++...+.. .++..++.. ++.|++.+.++.|+|.+-|...|
T Consensus 71 -----~GsG--------------I---------p~v~~~l~g~~~~~~l~~r~----~~~k~i~~~l~i~sG~svGrEGP 118 (426)
T cd03683 71 -----VGSG--------------I---------PEMKTILRGVVLPEYLTFKT----LVAKVIGLTCALGSGLPLGKEGP 118 (426)
T ss_pred -----CCCC--------------H---------HHHHHHHcCCCccccccHHH----HHHHHHHHHHHHhcCCCCCCCCc
Confidence 1111 0 1122222211 112223333 34699999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcc-----CCcchHHHHHHHhhhhhhhhhchhHHHHHHHHHHh-CCch--hHHHHHHHHHHHHH
Q 003966 485 IILMGSAYGRLLGMAMGSY-----TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT-NNLL--LLPITMIVLLIAKT 556 (783)
Q Consensus 485 ~l~iGa~~G~l~g~~~~~~-----~~~~~~~~alvGaaa~l~g~~r~pis~~vi~~ElT-g~~~--~l~pimia~~ia~~ 556 (783)
+..+||+.|..+++..... ...+-..+..+|+||.++++.++|++.+++.+|.. .+++ .+.+.++++++|..
T Consensus 119 ~v~iGa~i~~~~~~~~~~~~~~~~~~~~rr~Li~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~i~s~~a~~ 198 (426)
T cd03683 119 FVHISSIVAALLSKLTTFFSGIYENESRRMEMLAAACAVGVACTFGAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCGAF 198 (426)
T ss_pred hHHHHHHHHHHHHhhcccccccccCHHHHHHHHHhHhhhhhHHhcCCcceeeEEEeehhhhhccHHHHHHHHHHHHHHHH
Confidence 9999999999999987421 11233358899999999999999999999999976 3343 56777788888877
Q ss_pred HHhh
Q 003966 557 VGDS 560 (783)
Q Consensus 557 v~~~ 560 (783)
+.+.
T Consensus 199 v~~~ 202 (426)
T cd03683 199 TFRL 202 (426)
T ss_pred HHHH
Confidence 6654
No 124
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.72 E-value=2.5e-08 Score=79.57 Aligned_cols=55 Identities=29% Similarity=0.425 Sum_probs=51.3
Q ss_pred cccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHh
Q 003966 708 HPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 767 (783)
Q Consensus 708 ~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~ 767 (783)
+++|+++++++++++++.++.+.|++.+.+++||+|+ +++++|+||++||+++..
T Consensus 2 ~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~-----~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 2 GDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDE-----DGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEEST-----TSBEEEEEEHHHHHHHHH
T ss_pred eECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec-----CCEEEEEEEHHHHHhhhh
Confidence 4678899999999999999999999999999999998 899999999999998653
No 125
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.54 E-value=1.8e-07 Score=99.88 Aligned_cols=122 Identities=18% Similarity=0.332 Sum_probs=100.0
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
+++.++|..+++++++.-..+.+.++||.++. .-.++|+|+|+.+|+--+ ++
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g--------~~~~KLvG~vtsrdi~f~-~~------------------- 168 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDG--------KRGSKLVGIITSRDIQFL-ED------------------- 168 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCC--------cccceeEEEEehhhhhhh-hc-------------------
Confidence 45678999999999999999999999999765 233799999999998322 11
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
...-++++|...+++.+.+.++.++-+++++.....+||||+ ++++|-+|+|
T Consensus 169 -----------------------~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~-----~gelva~~~r 220 (503)
T KOG2550|consen 169 -----------------------NSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDD-----KGELVAMLSR 220 (503)
T ss_pred -----------------------ccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceecc-----CCceeeeeeh
Confidence 113357788888899999999999999999999999999998 8999999999
Q ss_pred hhchhhHhhhhCCccccccCC
Q 003966 760 QDLRAFNILTAFPHLERSKSG 780 (783)
Q Consensus 760 ~DLl~~~~~~~~~~l~~~~~~ 780 (783)
.||++ .+.+|...+...+
T Consensus 221 tDl~k---~~~yPlask~~~k 238 (503)
T KOG2550|consen 221 TDLMK---NRDYPLASKDSTK 238 (503)
T ss_pred hhhhh---hcCCCccccCccc
Confidence 99998 4567766654333
No 126
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.47 E-value=3.9e-07 Score=72.55 Aligned_cols=56 Identities=32% Similarity=0.588 Sum_probs=52.2
Q ss_pred cccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHH
Q 003966 591 VGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALK 659 (783)
Q Consensus 591 v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~ 659 (783)
|+|+|.+ +++++++++++.++.+.|++++++.+||+|++ ++++|+|+++||++.+.
T Consensus 1 v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLEEALEIMRKNGISRLPVVDED-----------GKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHHHHHHHHHHHTSSEEEEESTT-----------SBEEEEEEHHHHHHHHH
T ss_pred CeECCcC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-----------CEEEEEEEHHHHHhhhh
Confidence 5789999 99999999999999999999999999999987 89999999999987653
No 127
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.31 E-value=4.2e-06 Score=92.91 Aligned_cols=125 Identities=15% Similarity=0.211 Sum_probs=98.4
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
++..+.+++++.++++.|.+.+.+++||||+. ++.+|.+++.|...+.....+...... .+
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~-----------g~~v~~~s~~Dv~~l~~~~~~~~~~~~----~l---- 298 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIMSERRISALPVVDEN-----------GKKVGNYSRFDVIHLAREGTYNNLDLS----CL---- 298 (381)
T ss_pred hheeecCCCcHHHHHHHHHhcCcCcceEEcCC-----------CceecceehhhhhhhhhcCccCccchh----HH----
Confidence 57889999999999999999999999999987 677999999999887765443321110 00
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
. +....++.-....+++.++.+|.++++.+...+.++++|||+ +|+++|+||.
T Consensus 299 --~--------------------~~~~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~-----~~~l~GvvSL 351 (381)
T KOG1764|consen 299 --S--------------------EALSHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDE-----DGVLVGVISL 351 (381)
T ss_pred --H--------------------HHhhhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcC-----CCcEEEEeeH
Confidence 0 001112222233689999999999999999999999999998 8999999999
Q ss_pred hhchhhHhhhh
Q 003966 760 QDLRAFNILTA 770 (783)
Q Consensus 760 ~DLl~~~~~~~ 770 (783)
.|++.+.....
T Consensus 352 sDil~~l~~~p 362 (381)
T KOG1764|consen 352 SDILSYLVLTP 362 (381)
T ss_pred HHHHHHHHhCc
Confidence 99999887653
No 128
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.17 E-value=1.4e-05 Score=88.51 Aligned_cols=108 Identities=21% Similarity=0.223 Sum_probs=87.9
Q ss_pred eeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhhh
Q 003966 601 VITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFS 680 (783)
Q Consensus 601 vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~~ 680 (783)
.....++.+..++.+.+...+.+...|+|++ +++.|.|+.+++...++...
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~g~~~~~~~~~~~~~~~------------------ 302 (363)
T TIGR01186 252 PITKTADKGPRSALQLMRDERVDSLYVVDRQ-----------NKLVGVVDVESIKQARKKAQ------------------ 302 (363)
T ss_pred ceeecCCCCHHHHHHHHHhcCCceEEEEcCC-----------CCEEEEEeHHHHHHHhhcCC------------------
Confidence 3445667788999999998888899999887 89999999988865433210
Q ss_pred hHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehh
Q 003966 681 WVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQ 760 (783)
Q Consensus 681 ~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~ 760 (783)
.+.+.+.+...++.+++++.+++.+|.+.+.. +||+|+ +|+++|+||+.
T Consensus 303 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-----~~~~~g~i~~~ 351 (363)
T TIGR01186 303 -------------------------GLQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDE-----DQRLVGIVTRG 351 (363)
T ss_pred -------------------------chhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECC-----CCcEEEEEEHH
Confidence 12334456677899999999999999999998 999998 89999999999
Q ss_pred hchhhHhh
Q 003966 761 DLRAFNIL 768 (783)
Q Consensus 761 DLl~~~~~ 768 (783)
++++....
T Consensus 352 ~~~~~~~~ 359 (363)
T TIGR01186 352 SLVDALYD 359 (363)
T ss_pred HHHHHHHh
Confidence 99987654
No 129
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.17 E-value=1.3e-06 Score=89.93 Aligned_cols=58 Identities=22% Similarity=0.287 Sum_probs=54.0
Q ss_pred ccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhH
Q 003966 704 YIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 766 (783)
Q Consensus 704 ~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~ 766 (783)
.++..+||.++.+|+++++++.+|.+++.+++++.+||+|+ +.+++||||+.|+.+..
T Consensus 244 ~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~-----~~rl~GiVt~~dl~~~a 301 (382)
T COG3448 244 ELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDE-----HRRLVGIVTQRDLLKHA 301 (382)
T ss_pred cccHHHhcCccceecCCcCChHHHHHHHHHcCccccccccc-----ccceeeeeeHHHHhhcc
Confidence 35678999999999999999999999999999999999998 88999999999999843
No 130
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.13 E-value=1.5e-05 Score=89.24 Aligned_cols=120 Identities=16% Similarity=0.151 Sum_probs=92.5
Q ss_pred cccccccccCCC-eeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhh
Q 003966 589 LTVGELIDAKPP-VITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK 667 (783)
Q Consensus 589 l~v~dvM~~~~~-vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~ 667 (783)
+++.++|.+.+. .+...+.....++++.|+..+.+...|+|++ +++.|+|+..++.....+.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~g~~~~~~~~~~~~~~------ 336 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERG-----------NKFVGAVSIDSLKTALTQQ------ 336 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCC-----------CcEEEEEeHHHHHhhhhcC------
Confidence 566777754111 1233466788999999999999999999987 8999999999985533211
Q ss_pred ccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeecccc
Q 003966 668 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA 747 (783)
Q Consensus 668 ~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~ 747 (783)
.++.+.+++...+|.+++++.+++..+.+.... +||||+
T Consensus 337 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~--- 375 (400)
T PRK10070 337 -------------------------------------QGLDAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDE--- 375 (400)
T ss_pred -------------------------------------CchhhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECC---
Confidence 012334456677999999999999999997776 999998
Q ss_pred CCCCcEEEEEehhhchhhHhh
Q 003966 748 AGVSPVVGILTRQDLRAFNIL 768 (783)
Q Consensus 748 ~~~~~vvGIITr~DLl~~~~~ 768 (783)
+|+++|+||+.++++....
T Consensus 376 --~~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 376 --DQQYVGIISKGMLLRALDR 394 (400)
T ss_pred --CCcEEEEEEHHHHHHHHHh
Confidence 8999999999999997654
No 131
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.77 E-value=3.3e-05 Score=70.81 Aligned_cols=55 Identities=25% Similarity=0.314 Sum_probs=50.3
Q ss_pred cCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchh
Q 003966 705 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRA 764 (783)
Q Consensus 705 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~ 764 (783)
..+.++|.+.+.++++++++.+++++|++.+.+.+||+|+ +++++|+||++|+.+
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-----~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDD-----DGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECC-----CCeEEEEEEHHHhhc
Confidence 3467888889999999999999999999999999999997 789999999999864
No 132
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.76 E-value=5.1e-05 Score=69.59 Aligned_cols=54 Identities=17% Similarity=0.313 Sum_probs=50.4
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHH
Q 003966 589 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 655 (783)
Q Consensus 589 l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl 655 (783)
.+++|+|.+ ++.++++++++.++++.|.+.++..+||+|++ ++++|+|+.+++.
T Consensus 58 ~~v~dim~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-----------~~l~Givt~~dl~ 111 (113)
T cd04597 58 PRVRDVINR--KPVTARPNDPLREALNLMHEHNIRTLPVVDDD-----------GTPAGIITLLDLA 111 (113)
T ss_pred hhHHHhcCC--CCCEECCcCcHHHHHHHHHHcCCCEEEEECCC-----------CeEEEEEEHHHhh
Confidence 789999998 88899999999999999999999999999986 8999999999984
No 133
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.73 E-value=8.3e-06 Score=95.78 Aligned_cols=157 Identities=20% Similarity=0.292 Sum_probs=105.7
Q ss_pred HhcCCCCCCCCCC------Ccccccccccccc-cCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCC
Q 003966 571 ELKGLPFLDAHPE------PWMRTLTVGELID-AKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVAT 643 (783)
Q Consensus 571 ~~kg~p~l~~~~~------~~l~~l~v~dvM~-~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~ 643 (783)
+.+++|.+..... ..-...+++++|+ + +++++++++++.++.+.|.+++++.+||+|++ +
T Consensus 222 ~~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~-----------g 288 (546)
T PRK14869 222 KENGVTVISTPYDTFTTARLINQSIPVSYIMTTE--DLVTFSKDDYLEDVKEVMLKSRYRSYPVVDED-----------G 288 (546)
T ss_pred HhCCCeEEEecccHHHHHHHhhcCCCHHHhccCC--CcEEECCCCcHHHHHHHHHhcCCCceEEEcCC-----------C
Confidence 4456666543321 1124678999999 7 89999999999999999999999999999987 8
Q ss_pred eEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccC---ccccccCCCeee--
Q 003966 644 ELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYID---LHPLTNTTPYTV-- 718 (783)
Q Consensus 644 ~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~d---l~~im~~~p~tV-- 718 (783)
+++|+|+++|++...+++....+.. +... .... +++ .+...-+| +.++++..|+.+
T Consensus 289 ~lvGiit~~dl~~~~~~~~iLVD~~-----e~~q--~~~~-------~~~-----~~i~~iiDHH~~~~~~~~~pi~~~~ 349 (546)
T PRK14869 289 KVVGVISRYHLLSPVRKKVILVDHN-----EKSQ--AVEG-------IEE-----AEILEIIDHHRLGDIQTSNPIFFRN 349 (546)
T ss_pred CEEEEEEHHHhhccccCceEEEcCc-----cccc--cccc-------hhh-----ceEEEEecCCccCCCCCCCCcEEEe
Confidence 9999999999987544332211110 0000 0000 000 00001112 345666777665
Q ss_pred -cCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhh
Q 003966 719 -IESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 765 (783)
Q Consensus 719 -~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~ 765 (783)
+...+...+.++|++.+....|++. ...+.||+|..+.++.
T Consensus 350 ~~~gst~tiv~~~~~~~~i~~~~~ia------~~ll~gIlsDT~~f~~ 391 (546)
T PRK14869 350 EPVGSTSTIVARMYRENGIEPSPEIA------GLLLAAILSDTLLFKS 391 (546)
T ss_pred eeeeeHHHHHHHHHHHcCCCCCHHHH------HHHHHHHHHHhcCccC
Confidence 3466677899999999998888886 3568999999888864
No 134
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=97.55 E-value=7.1e-05 Score=85.64 Aligned_cols=112 Identities=11% Similarity=0.216 Sum_probs=87.6
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhc
Q 003966 589 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 668 (783)
Q Consensus 589 l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~ 668 (783)
.+++|+|.+ ++.++++++++.++.+.|+++++..+||+|++ ++++|+|+.+|++..+.++.
T Consensus 195 ~~v~~im~~--~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~-----------g~lvGiIt~~Dil~~l~~~~------ 255 (449)
T TIGR00400 195 EILSSIMRS--SVFSIVGVNDQEEVARLIQKYDFLAVPVVDNE-----------GRLVGIVTVDDIIDVIQSEA------ 255 (449)
T ss_pred CcHHHHhCC--CCeeECCCCCHHHHHHHHHHcCCCEEeEEcCC-----------CeEEEEEEHHHHHHHHHhhh------
Confidence 468999998 88899999999999999999999999999987 89999999999988765421
Q ss_pred cchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccC
Q 003966 669 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA 748 (783)
Q Consensus 669 ~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~ 748 (783)
.+ ++|+....+..+++.+.++...+.+.++..++|.-
T Consensus 256 ------------~e--------------------------d~~~~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~~----- 292 (449)
T TIGR00400 256 ------------TE--------------------------DFYMIAAVKPLDDSYFDTSILVMAKNRIIWLLVLL----- 292 (449)
T ss_pred ------------HH--------------------------HHHHhcCCCCCcchhhhchHHHHHHhccchHHHHH-----
Confidence 01 22223333444567889999999999998888863
Q ss_pred CCCcEEEEEehhhchhhHh
Q 003966 749 GVSPVVGILTRQDLRAFNI 767 (783)
Q Consensus 749 ~~~~vvGIITr~DLl~~~~ 767 (783)
+.|++| ..++..+-
T Consensus 293 ----~~~~~t-~~ii~~f~ 306 (449)
T TIGR00400 293 ----VSSTFT-ATIISNYE 306 (449)
T ss_pred ----HHHHHH-HHHHHHHH
Confidence 678888 66666443
No 135
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=97.51 E-value=8.8e-05 Score=70.08 Aligned_cols=62 Identities=21% Similarity=0.276 Sum_probs=55.7
Q ss_pred hccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHhhhh
Q 003966 703 MYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTA 770 (783)
Q Consensus 703 ~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~~~~ 770 (783)
..+..+.+|+++.+.|.+++++.++.++|+..|..++||++ +++++|-||-.|+.+...++.
T Consensus 63 ~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~------~~k~VGsItE~~iv~~~le~~ 124 (187)
T COG3620 63 TRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIE------EDKVVGSITENDIVRALLEGM 124 (187)
T ss_pred ceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceee------CCeeeeeecHHHHHHHHhccc
Confidence 44566889999999999999999999999999999999998 489999999999999876553
No 136
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=97.42 E-value=0.00016 Score=73.59 Aligned_cols=58 Identities=26% Similarity=0.287 Sum_probs=53.6
Q ss_pred CccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHhhh
Q 003966 706 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT 769 (783)
Q Consensus 706 dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~~~ 769 (783)
.++++|.++++++.+++|+.++.++|.+.++|..||+|+ ++++||+|.+|+.++..+.
T Consensus 173 ~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~------dk~vGiit~~dI~~aia~g 230 (294)
T COG2524 173 KVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD------DKIVGIITLSDIAKAIANG 230 (294)
T ss_pred hhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC------CceEEEEEHHHHHHHHHcC
Confidence 467889999999999999999999999999999999996 4999999999999987654
No 137
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.39 E-value=0.00028 Score=64.04 Aligned_cols=55 Identities=27% Similarity=0.338 Sum_probs=50.2
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHH
Q 003966 589 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 656 (783)
Q Consensus 589 l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~ 656 (783)
.++.++|.. ++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|+++
T Consensus 56 ~~v~~~~~~--~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~-----------~~~~Giit~~di~~ 110 (111)
T cd04603 56 LKVCEVYIV--PVPIVYCDSKVTDLLRIFRETEPPVVAVVDKE-----------GKLVGTIYERELLR 110 (111)
T ss_pred cChhheeec--CCcEECCCCcHHHHHHHHHHcCCCeEEEEcCC-----------CeEEEEEEhHHhhc
Confidence 468899988 88899999999999999999999999999986 89999999999864
No 138
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.38 E-value=0.0003 Score=62.72 Aligned_cols=48 Identities=21% Similarity=0.186 Sum_probs=42.5
Q ss_pred CeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhH
Q 003966 715 PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 766 (783)
Q Consensus 715 p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~ 766 (783)
++++++++++.++.++|++.+.+++||+|+ ++++++|+||++|+.+..
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~----~~~~~~Givt~~Dl~~~~ 50 (98)
T cd04618 3 LVVFDTKLPVKKAFNALVENGIRSAPLWDS----RKQQFVGMLTITDFILIL 50 (98)
T ss_pred EEEECCCCcHHHHHHHHHHcCCceEEEEeC----CCCEEEEEEEHHHHhhhe
Confidence 568999999999999999999999999986 137899999999998743
No 139
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.29 E-value=0.00035 Score=63.62 Aligned_cols=56 Identities=16% Similarity=0.278 Sum_probs=50.7
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHH
Q 003966 588 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 656 (783)
Q Consensus 588 ~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~ 656 (783)
..+++++|.+ +++++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|+++
T Consensus 58 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----------~~~~Gvi~~~dl~~ 113 (114)
T cd04619 58 TAPVENVMTR--AVVSCRPGDLLHDVWQVMKQRGLKNIPVVDEN-----------ARPLGVLNARDALK 113 (114)
T ss_pred cCCHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCeEEEECCC-----------CcEEEEEEhHhhcc
Confidence 3568899988 88999999999999999999999999999976 79999999999853
No 140
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.29 E-value=0.00052 Score=63.06 Aligned_cols=48 Identities=15% Similarity=0.175 Sum_probs=43.7
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhH
Q 003966 714 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 766 (783)
Q Consensus 714 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~ 766 (783)
+..++++++++.++.++|.+.+.+++||+|+ +++++|++|++|++...
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~-----~~~~~Giv~~~dl~~~~ 49 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDE-----NGKVVDVYSRFDVINLA 49 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC-----CCeEEEEEeHHHHHHHH
Confidence 4568999999999999999999999999997 78999999999999754
No 141
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.21 E-value=0.00071 Score=50.34 Aligned_cols=46 Identities=35% Similarity=0.499 Sum_probs=41.6
Q ss_pred CeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhh
Q 003966 715 PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 765 (783)
Q Consensus 715 p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~ 765 (783)
+.++.+++++.++.+.|++.+.+++||+++ +++++|+++++|+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~g~i~~~~l~~~ 47 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDE-----EGRLVGIVTRRDIIKA 47 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECC-----CCeEEEEEEHHHHHHh
Confidence 457899999999999999999999999997 6899999999998764
No 142
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.16 E-value=0.00089 Score=63.38 Aligned_cols=49 Identities=24% Similarity=0.251 Sum_probs=44.8
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHh
Q 003966 714 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 767 (783)
Q Consensus 714 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~ 767 (783)
.+.++.+++++.++.+.|.+.+...+||+|+ +++++|+||.+|+++...
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~-----~g~l~Givt~~Dl~~~~~ 50 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS-----DDFLEGILTLGDIQRFLF 50 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECC-----CCeEEEEEEHHHHHHHHh
Confidence 4678999999999999999999999999997 789999999999998654
No 143
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.13 E-value=0.00092 Score=59.14 Aligned_cols=47 Identities=26% Similarity=0.290 Sum_probs=43.1
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhh
Q 003966 714 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 765 (783)
Q Consensus 714 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~ 765 (783)
++.++.+++++.++.+.|.+.+.+.+||+|+ +++++|++|.+|+.+.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-----~~~~~Giv~~~dl~~~ 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDD-----DGKLSGIITERDLIAK 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECC-----CCCEEEEEEHHHHhcC
Confidence 5678999999999999999999999999997 7899999999998863
No 144
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=97.10 E-value=0.0013 Score=61.14 Aligned_cols=51 Identities=24% Similarity=0.406 Sum_probs=45.8
Q ss_pred CCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHhh
Q 003966 713 TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 768 (783)
Q Consensus 713 ~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~~ 768 (783)
+++.++++++++.++.+.|++.+.+++||+|+ +++++|+||.+|+++....
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~-----~~~~~Gii~~~dl~~~~~~ 52 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDE-----SGKILGMVTLGNLLSSLSS 52 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-----CCCEEEEEEHHHHHHHHHH
Confidence 45778999999999999999999999999997 7899999999999976554
No 145
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.02 E-value=0.0014 Score=75.87 Aligned_cols=57 Identities=21% Similarity=0.362 Sum_probs=51.7
Q ss_pred cccccccc-cCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHH
Q 003966 589 LTVGELID-AKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL 658 (783)
Q Consensus 589 l~v~dvM~-~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL 658 (783)
.+++|+|. + +++++++++++.++.+.|.+++.+.+||+|++ ++++|+|+++|++..+
T Consensus 147 ~~V~dim~~~--~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~-----------g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 147 QPVSEVMTKE--RLVTVPEGTTLEEALELLHEHRIEKLPVVDDN-----------GRLKGLITVKDIEKAE 204 (486)
T ss_pred CcHHHHcCCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----------CcEEEEEEhHHhhhhh
Confidence 46889998 6 88999999999999999999999999999987 8999999999997654
No 146
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.93 E-value=0.0051 Score=70.07 Aligned_cols=173 Identities=16% Similarity=0.128 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHH
Q 003966 89 WSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEIK 168 (783)
Q Consensus 89 w~~~~liGv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~ 168 (783)
.+..+++|+..|+.+.++...--...+.+-.. ..+.|.. ...+..+.+ ..+..+..|..+=.+..-+.
T Consensus 309 L~pFi~LGifgGl~G~~~ir~n~~~~~~rK~~-----~lg~~pv------~ev~~vt~i-TaiIs~~np~~r~~~~e~i~ 376 (696)
T KOG0475|consen 309 LLPFILLGIFGGLWGAFFIRLNIRFCRFRKSS-----KLGKFPV------LEVVFVTLV-TAIISLFNPETRFNMSELIT 376 (696)
T ss_pred chHHHHHHHhhhHHHHHHHHHHHHHHhccchh-----hccCCcc------hhHHHHHHH-HHHHHhcCHHHHhhHHHHHH
Confidence 34678999999999998877655554443322 1222321 111222233 33556777877766644455
Q ss_pred HHHhCCCCCC-------------cchhHHHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHhhcCCCCcc-cchhhhh
Q 003966 169 AYLNGVDTPN-------------MFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNH-RIKWQWL 234 (783)
Q Consensus 169 ~~lng~~~~~-------------~l~~~tl~~K~~~~~~sv~sG~s~G~EGP~vhiGa~igs~l~~~~s~~~-~l~~~~~ 234 (783)
..+|.-.... .+-...++.|++.++++.|++.+.|---|...+||+.|..+|-+.-+.+ +-+|..+
T Consensus 377 ~Lf~~C~~~~s~~l~~~~~~~~~~~L~~a~i~k~~~t~ftfGakvP~GifvPSmaiGA~aGr~vG~~~e~l~~~~~~~~f 456 (696)
T KOG0475|consen 377 ILFNKCSPSSSTSLPETTVYSAAILLLLALILKIALTIFTFGAKVPAGIFVPSLAIGAIAGRAVGIIVEQLAQNPDFNLF 456 (696)
T ss_pred HHHhhcCCcccccCcccchHHHHHHHHHHHHHHHHHHHhhhhccCccceecchHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 5555322111 1234567899999999999999999999999999999999884211110 0000000
Q ss_pred hccCCcchhhhHHHhhhhhhhhhhccCcccceeeeeeecch
Q 003966 235 RYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVAT 275 (783)
Q Consensus 235 ~~f~~~~~~r~lv~~GaAAGvaaaF~APigGvLFalE~~~~ 275 (783)
. .+-.---.....||||-++.+-|-|+.-|+-..|.+..
T Consensus 457 g--~~ci~Pg~Ya~vGaAA~LsGvtrltvtlVVImFELTG~ 495 (696)
T KOG0475|consen 457 G--LSCATPGAYALVGAAATLSGVTRLTVTLVVIMFELTGA 495 (696)
T ss_pred c--hhhcCchHHHHHHHHHHhcCcceeeEEEEEEeeeccCc
Confidence 0 01112334667899999999999999999999999865
No 147
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.92 E-value=0.0015 Score=59.07 Aligned_cols=54 Identities=24% Similarity=0.333 Sum_probs=49.0
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHH
Q 003966 589 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 655 (783)
Q Consensus 589 l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl 655 (783)
.++.++|.+ ++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|++
T Consensus 58 ~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----------~~~~Gvit~~di~ 111 (113)
T cd04607 58 DPVSEVMNR--NPITAKVGSSREEILALMRERSIRHLPILDEE-----------GRVVGLATLDDLL 111 (113)
T ss_pred CCHHHhhcC--CCEEEcCCCCHHHHHHHHHHCCCCEEEEECCC-----------CCEEEEEEhHHhc
Confidence 457889988 88899999999999999999999999999876 7899999999984
No 148
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=96.91 E-value=0.0019 Score=57.56 Aligned_cols=48 Identities=29% Similarity=0.352 Sum_probs=43.4
Q ss_pred CCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhh
Q 003966 713 TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 765 (783)
Q Consensus 713 ~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~ 765 (783)
+++.++++++++.++++.|++.+.++++|+|+ +|+++|++|++|+.+.
T Consensus 1 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~-----~g~~~Giv~~~dl~~~ 48 (106)
T cd04582 1 TEPITVRPDDPLSDALGLMDDSDLRALTVVDA-----DGQPLGFVTRREAARA 48 (106)
T ss_pred CCCcEecCCCcHHHHHHHHHhcCCCEEEEECC-----CCCEEEEEeHHHHHHh
Confidence 35678999999999999999999999999987 7899999999999874
No 149
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.90 E-value=0.0015 Score=60.02 Aligned_cols=57 Identities=28% Similarity=0.579 Sum_probs=51.1
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHH
Q 003966 587 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 656 (783)
Q Consensus 587 ~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~ 656 (783)
...+++++|.+ ++.++++++++.++++.|.+.+.+.+||+|++ ++++|+|+++|++.
T Consensus 67 ~~~~i~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----------g~~~Gvit~~di~~ 123 (124)
T cd04600 67 KPETVGDIMSP--PVVTVRPDTPIAELVPLLADGGHHHVPVVDED-----------RRLVGIVTQTDLIA 123 (124)
T ss_pred ccccHHHhccC--CCeeeCCCCcHHHHHHHHHhcCCCceeEEcCC-----------CCEEEEEEhHHhhc
Confidence 34578899988 89999999999999999999999999999976 89999999999853
No 150
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.90 E-value=0.0015 Score=58.78 Aligned_cols=57 Identities=21% Similarity=0.380 Sum_probs=50.6
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHH
Q 003966 588 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLA 657 (783)
Q Consensus 588 ~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~l 657 (783)
+.+++++|.+ +..++.+++++.++.+.+.+.+...+||+|++ ++++|+|+++|++..
T Consensus 52 ~~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----------~~~~Gvit~~dll~~ 108 (109)
T cd04606 52 DTPVSDIMDT--DVISVSADDDQEEVARLFEKYDLLALPVVDEE-----------GRLVGIITVDDVIDV 108 (109)
T ss_pred cchHHHHhCC--CCeEEcCCCCHHHHHHHHHHcCCceeeeECCC-----------CcEEEEEEhHHhhhh
Confidence 3568888987 88999999999999999999998899999876 799999999999753
No 151
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=96.87 E-value=0.0018 Score=59.03 Aligned_cols=57 Identities=23% Similarity=0.416 Sum_probs=51.5
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHH
Q 003966 587 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 656 (783)
Q Consensus 587 ~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~ 656 (783)
+..++.++|.+ +..++++++++.++++.|.+.+.+.+||+|++ ++++|+|++.|+++
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----------~~~~Gvvt~~di~~ 121 (122)
T cd04585 65 SKIKVSDIMTR--DPITVSPDASVEEAAELMLERKISGLPVVDDQ-----------GRLVGIITESDLFR 121 (122)
T ss_pred cccCHHHhccC--CCeEeCCCCcHHHHHHHHHHcCCCceeEECCC-----------CcEEEEEEHHHhhh
Confidence 45678899988 89999999999999999999999999999876 79999999999864
No 152
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.87 E-value=0.0016 Score=58.99 Aligned_cols=56 Identities=27% Similarity=0.512 Sum_probs=49.0
Q ss_pred ccccccccccCCCeeEEcCc--ccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHH
Q 003966 588 TLTVGELIDAKPPVITLSGI--EKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 656 (783)
Q Consensus 588 ~l~v~dvM~~~~~vv~l~~~--~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~ 656 (783)
+.++.++|.+ ++.+++++ +++.++++.|.+++...+||+|++ ++++|+|+++++++
T Consensus 57 ~~~i~~~~~~--~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~-----------~~~~Gvit~~dl~~ 114 (115)
T cd04620 57 DLPIGEVMTQ--PVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQ-----------GQLIGLVTAESIRQ 114 (115)
T ss_pred ccCHHHhcCC--CcEEEecccccCHHHHHHHHHHhCCceEEEEcCC-----------CCEEEEEEhHHhhc
Confidence 3568889988 88888877 789999999999999999999986 89999999999864
No 153
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=96.87 E-value=0.0014 Score=71.83 Aligned_cols=58 Identities=19% Similarity=0.241 Sum_probs=51.3
Q ss_pred ccCccccccC--CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhH
Q 003966 704 YIDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 766 (783)
Q Consensus 704 ~~dl~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~ 766 (783)
.+.++++|.+ ++.++++++++.++.++|++.+.+.+||+|+ +|+++|+||.+|+.+..
T Consensus 201 ~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~-----~g~lvGivt~~Dl~~~~ 260 (326)
T PRK10892 201 LLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDD-----NMKIEGIFTDGDLRRVF 260 (326)
T ss_pred cCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcC-----CCcEEEEEecHHHHHHH
Confidence 4567899987 8899999999999999999999988888887 78999999999997643
No 154
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=96.86 E-value=0.0013 Score=71.87 Aligned_cols=57 Identities=28% Similarity=0.320 Sum_probs=52.3
Q ss_pred cCccccccCC--CeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhH
Q 003966 705 IDLHPLTNTT--PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 766 (783)
Q Consensus 705 ~dl~~im~~~--p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~ 766 (783)
.+++++|+++ +.++++++++.++.+.|++.+..++||+|+ +|+++|+||.+|+.+..
T Consensus 197 ~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~-----~g~~iG~vt~~dl~~~~ 255 (321)
T PRK11543 197 NKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDA-----QQQVQGVFTDGDLRRWL 255 (321)
T ss_pred hHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC-----CCcEEEEecHHHHHHHH
Confidence 5688999998 999999999999999999999999999998 88999999999987644
No 155
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.85 E-value=0.0028 Score=57.04 Aligned_cols=49 Identities=22% Similarity=0.230 Sum_probs=44.0
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHh
Q 003966 714 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 767 (783)
Q Consensus 714 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~ 767 (783)
++.++++++++.++.+.|.+.+.+.+||+|+ +++++|+||++|+++...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-----~~~~~G~v~~~~l~~~~~ 50 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDP-----DERPIGIVTERDIVRAVA 50 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECC-----CCCEEEEeeHHHHHHHHh
Confidence 4678999999999999999999999999997 789999999999987543
No 156
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.80 E-value=0.0031 Score=57.67 Aligned_cols=49 Identities=33% Similarity=0.420 Sum_probs=44.5
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHh
Q 003966 714 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 767 (783)
Q Consensus 714 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~ 767 (783)
++.++++++++.++.+.|.+.+.+.+||+|+ +++++|+||.+|+.+...
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~-----~~~~~Givt~~dl~~~~~ 50 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDE-----DGDLVGVVSRKDLLKASI 50 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-----CCCEEEEEEHHHHHHHHH
Confidence 4578999999999999999999999999997 789999999999988664
No 157
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.79 E-value=0.0022 Score=57.57 Aligned_cols=56 Identities=20% Similarity=0.334 Sum_probs=50.2
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHH
Q 003966 588 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 656 (783)
Q Consensus 588 ~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~ 656 (783)
+.++.++|.+ ++.++++++++.++.+.|.+.+.+.+||+|++ ++++|+|++++++.
T Consensus 52 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----------~~~~G~it~~di~~ 107 (108)
T cd04596 52 DTTIEKVMTK--NPITVNPKTSVASVAHMMIWEGIEMLPVVDDN-----------KKLLGIISRQDVLK 107 (108)
T ss_pred cccHHHHhcC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEcCC-----------CCEEEEEEHHHhhc
Confidence 3568899988 88899999999999999999999999999976 79999999999853
No 158
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=96.78 E-value=0.0015 Score=73.63 Aligned_cols=64 Identities=25% Similarity=0.361 Sum_probs=57.4
Q ss_pred CccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHhhhhCCcc
Q 003966 706 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHL 774 (783)
Q Consensus 706 dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~~~~~~~l 774 (783)
.+.+.+..+|++|++++|+.+|.+.|...|...+.|+++ +++..||||++|+.+..+.+-.+..
T Consensus 150 rv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~-----~~~~~GIvT~~dl~~~v~~~g~~~~ 213 (610)
T COG2905 150 RVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDD-----SGPLLGIVTRKDLRSRVIADGRSKT 213 (610)
T ss_pred HHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcC-----CCCccceeehHHHHHHHHhcCCCcc
Confidence 456778899999999999999999999999999999998 8999999999999998887665543
No 159
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.77 E-value=0.0033 Score=56.39 Aligned_cols=49 Identities=29% Similarity=0.328 Sum_probs=44.2
Q ss_pred CCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhH
Q 003966 713 TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 766 (783)
Q Consensus 713 ~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~ 766 (783)
+++.++++++++.++++.|.+.+..++||+|+ +|+++|++|.+|+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-----~~~~~G~v~~~~l~~~~ 50 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDE-----DGRLVGIVTSWDISKAV 50 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECC-----CCcEEEEEeHHHHHHHH
Confidence 46678999999999999999999999999997 78999999999998643
No 160
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.76 E-value=0.0026 Score=58.65 Aligned_cols=52 Identities=17% Similarity=0.214 Sum_probs=46.6
Q ss_pred cccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHH
Q 003966 591 VGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 655 (783)
Q Consensus 591 v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl 655 (783)
+.++|.+ ++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|+.
T Consensus 70 ~~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----------~~~vGiit~~di~ 121 (123)
T cd04627 70 DLTIGTS--DVISINGDQPLIDALHLMHNEGISSVAVVDNQ-----------GNLIGNISVTDVR 121 (123)
T ss_pred hcccCcC--CceEeCCCCCHHHHHHHHHHcCCceEEEECCC-----------CcEEEEEeHHHhh
Confidence 3456777 88999999999999999999999999999886 7899999999984
No 161
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.76 E-value=0.0026 Score=57.41 Aligned_cols=56 Identities=21% Similarity=0.484 Sum_probs=49.9
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHH
Q 003966 587 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 655 (783)
Q Consensus 587 ~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl 655 (783)
.+.++.++|.+ ++.++++++++.++++.|.+++.+.+||+|++ ++++|+|++.|++
T Consensus 56 ~~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~-----------g~~~Gvvt~~dl~ 111 (113)
T cd04615 56 KDAKVREVMNS--PVITIDANDSIAKARWLMSNNNISRLPVLDDK-----------GKVGGIVTEDDIL 111 (113)
T ss_pred cCCcHHHhccC--CceEECCCCcHHHHHHHHHHcCCCeeeEECCC-----------CeEEEEEEHHHhh
Confidence 34568889988 88999999999999999999998899999886 7999999999985
No 162
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=96.75 E-value=0.0039 Score=46.21 Aligned_cols=47 Identities=30% Similarity=0.509 Sum_probs=41.4
Q ss_pred eeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHH
Q 003966 601 VITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL 658 (783)
Q Consensus 601 vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL 658 (783)
+.++++.+++.++.+.+.+.+++.+||++++ ++++|+++..++...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEE-----------GRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCC-----------CeEEEEEEHHHHHHhh
Confidence 4578899999999999999999999999886 7899999999997644
No 163
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.75 E-value=0.0031 Score=57.15 Aligned_cols=49 Identities=16% Similarity=0.181 Sum_probs=43.9
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHh
Q 003966 714 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 767 (783)
Q Consensus 714 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~ 767 (783)
.++++++++++.++.++|++.+.+.+||+|+ +++++|+++.+|+++...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-----~~~~~Giv~~~dl~~~~~ 50 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK-----EGKYVGTISLTDILWKLK 50 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECC-----CCcEEEEEeHHHHHHHhh
Confidence 3568999999999999999999999999997 789999999999987543
No 164
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.74 E-value=0.0026 Score=57.26 Aligned_cols=54 Identities=20% Similarity=0.269 Sum_probs=48.7
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHH
Q 003966 589 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 656 (783)
Q Consensus 589 l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~ 656 (783)
.++.++|.+ ++.++++++++.++++.|.+.+...+||+|+ ++++|+|++++++.
T Consensus 58 ~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~------------~~~~Gvvt~~dl~~ 111 (112)
T cd04625 58 TTVRAIMNP--EPIVASPDDSIDEVRRLMVERHLRYLPVLDG------------GTLLGVISFHDVAK 111 (112)
T ss_pred CCHHHHhCC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEEC------------CEEEEEEEHHHhhc
Confidence 568899988 7889999999999999999999999999985 79999999999854
No 165
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.74 E-value=0.0038 Score=56.59 Aligned_cols=49 Identities=27% Similarity=0.335 Sum_probs=43.8
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCC-CcEEEEEehhhchhhHh
Q 003966 714 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV-SPVVGILTRQDLRAFNI 767 (783)
Q Consensus 714 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~-~~vvGIITr~DLl~~~~ 767 (783)
++.++++++++.++.+.|++.+.+.+||+|+ + ++++|++|.+|+++...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~~G~v~~~dl~~~~~ 51 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKR-----RESDAYGIVTMRDILKKVV 51 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEEC-----CCCcEEEEEehHHHHHHHH
Confidence 4568999999999999999999999999997 6 89999999999987543
No 166
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.73 E-value=0.0029 Score=59.84 Aligned_cols=56 Identities=20% Similarity=0.427 Sum_probs=50.4
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHH
Q 003966 587 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 656 (783)
Q Consensus 587 ~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~ 656 (783)
...+++++|.+ ++..+.+++++.++++.|.+.+++.+||+++ ++++|+|+++++++
T Consensus 79 ~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~------------~~~~Gvit~~di~~ 134 (135)
T cd04621 79 VPLVAEDIMTE--EIITVSPNDDVVDAAKLMLEANISGLPVVDN------------DNIVGVITKTDICR 134 (135)
T ss_pred ccccHHHhcCC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEeC------------CEEEEEEEHHHHhh
Confidence 45679999988 8889999999999999999999999999986 68999999999854
No 167
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=96.71 E-value=0.0031 Score=56.75 Aligned_cols=48 Identities=19% Similarity=0.250 Sum_probs=43.4
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhH
Q 003966 714 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 766 (783)
Q Consensus 714 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~ 766 (783)
++.++++++++.++.+.|++.+.+++||+|+ +++++|+||++|+.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~G~v~~~~l~~~~ 49 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDD-----DGRLVGIVSLDDIREIL 49 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECC-----CCCEEEEEEHHHHHHHH
Confidence 4568999999999999999999999999997 68999999999998643
No 168
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.71 E-value=0.0032 Score=58.43 Aligned_cols=46 Identities=30% Similarity=0.470 Sum_probs=42.4
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchh
Q 003966 714 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRA 764 (783)
Q Consensus 714 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~ 764 (783)
++.++.+++++.++.+.|++.+.+++||+|+ +++++|+++.+|+.+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-----~~~~~Giv~~~dl~~ 47 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDS-----DDNFIGVITAVDLLG 47 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcC-----CCcEEEEEEHHHHhh
Confidence 4678999999999999999999999999997 789999999999985
No 169
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=96.68 E-value=0.0039 Score=56.56 Aligned_cols=49 Identities=24% Similarity=0.194 Sum_probs=44.0
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHh
Q 003966 714 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 767 (783)
Q Consensus 714 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~ 767 (783)
++.++.+++++.++.+.|.+.+...++|+|+ +++++|+++++|+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-----~~~~~G~v~~~dl~~~~~ 50 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDR-----DGGVVGIITLPDLLRALE 50 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcC-----CCCEEEEEEHHHHHHHHh
Confidence 4668999999999999999999999999997 789999999999987543
No 170
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.68 E-value=0.0031 Score=56.23 Aligned_cols=55 Identities=22% Similarity=0.331 Sum_probs=49.2
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHH
Q 003966 589 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 656 (783)
Q Consensus 589 l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~ 656 (783)
..++++|.+ +..++++++++.++++.+.+++.+.+||+|++ ++++|+|+.+++++
T Consensus 52 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----------g~~~Gvi~~~di~~ 106 (107)
T cd04610 52 ETVEEIMSK--DLVVAVPEMDIMDAARVMFRTGISKLPVVDEN-----------NNLVGIITNTDVIR 106 (107)
T ss_pred ccHHHhCCC--CCeEECCCCCHHHHHHHHHHhCCCeEeEECCC-----------CeEEEEEEHHHhhc
Confidence 458889987 88899999999999999999998999999986 79999999999853
No 171
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=96.67 E-value=0.003 Score=56.97 Aligned_cols=55 Identities=15% Similarity=0.289 Sum_probs=49.5
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHH
Q 003966 589 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 656 (783)
Q Consensus 589 l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~ 656 (783)
.++.++|.+ +..++++++++.++++.+.+++...+||+|++ ++++|+|++.|++.
T Consensus 59 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----------~~~iG~it~~di~~ 113 (114)
T cd04604 59 LPVADVMTR--NPKTIDPDALAAEALELMEENKITALPVVDDN-----------GRPVGVLHIHDLLR 113 (114)
T ss_pred CCHHHhhcc--CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-----------CCEEEEEEHHHhhc
Confidence 468899988 88899999999999999999888999999875 89999999999853
No 172
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.67 E-value=0.0028 Score=58.09 Aligned_cols=57 Identities=21% Similarity=0.430 Sum_probs=51.1
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHH
Q 003966 587 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 656 (783)
Q Consensus 587 ~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~ 656 (783)
...++.++|.+ ++.++++++++.++++.|.+.+.+.+||+|++ ++++|+|++.|++.
T Consensus 65 ~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----------~~~~Gvit~~dl~~ 121 (122)
T cd04803 65 RDVPVAEVMKT--DVLTVTPDTPLREAAEIMVENKIGCLPVVDDK-----------GTLVGIITRSDFLR 121 (122)
T ss_pred cCcCHHHhhCC--CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCC-----------CCEEEEEEHHHhhc
Confidence 45678899988 88999999999999999999998999999886 78999999999853
No 173
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.67 E-value=0.0044 Score=55.65 Aligned_cols=49 Identities=24% Similarity=0.283 Sum_probs=43.7
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHh
Q 003966 714 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 767 (783)
Q Consensus 714 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~ 767 (783)
++.++.+++++.++.+.|.+.+..++||+|+ +++++|++|++|+++...
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~Giv~~~~l~~~~~ 50 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDD-----GGRLVGIFSERDIVRKVA 50 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECC-----CCCEEEEEehHHHHHHHh
Confidence 4567899999999999999999999999997 689999999999987543
No 174
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.67 E-value=0.0029 Score=73.04 Aligned_cols=59 Identities=15% Similarity=0.256 Sum_probs=53.5
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHH
Q 003966 588 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLA 657 (783)
Q Consensus 588 ~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~l 657 (783)
+.+++|+|++.++++++++++++.++.+.|.+++.+.+||+|++ ++++|+|+++|+++.
T Consensus 160 ~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~-----------g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 160 DTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKN-----------GNLVYLVFRKDYDSH 218 (502)
T ss_pred CCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CeEEEEEEhHHHHhc
Confidence 46799999865578999999999999999999999999999986 799999999999774
No 175
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=96.66 E-value=0.0092 Score=66.54 Aligned_cols=133 Identities=17% Similarity=0.210 Sum_probs=97.6
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhh
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 679 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~ 679 (783)
+.+.+.+..++-+....+.+.+++.+||.|.+ .+++..+++-+-+++.+.......
T Consensus 163 ~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~----------~~~v~~ilt~~rIl~~l~~~~~~~-------------- 218 (381)
T KOG1764|consen 163 PFVSISPESSLLDAVLLLIKSRIHRVPVIDPE----------TGEVLYILTQRRILKFLWLNGRLL-------------- 218 (381)
T ss_pred CceeecCcHHHHHHHHHHHhCCccceeeeccc----------ccceeeehhHHHHHHHHHHhhccc--------------
Confidence 54889999999999999999999999999953 269999999999988775432111
Q ss_pred hhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEeh
Q 003966 680 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 759 (783)
Q Consensus 680 ~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr 759 (783)
....+... ++.|..+ -+......+.+++++.+|+++|++.++..+||||+ .++.+|++++
T Consensus 219 ~~~~~l~~--s~~dl~i-------------g~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~-----~g~~v~~~s~ 278 (381)
T KOG1764|consen 219 PLPSLLSK--SLSDLGI-------------GTWSNIASISEDTPVIEALKIMSERRISALPVVDE-----NGKKVGNYSR 278 (381)
T ss_pred ccHHHhhC--CHHHhCc-------------chhhhheeecCCCcHHHHHHHHHhcCcCcceEEcC-----CCceecceeh
Confidence 00111100 1111111 11124668899999999999999999999999998 7888999999
Q ss_pred hhchhhHhhhhCCcccc
Q 003966 760 QDLRAFNILTAFPHLER 776 (783)
Q Consensus 760 ~DLl~~~~~~~~~~l~~ 776 (783)
.|........-+..+..
T Consensus 279 ~Dv~~l~~~~~~~~~~~ 295 (381)
T KOG1764|consen 279 FDVIHLAREGTYNNLDL 295 (381)
T ss_pred hhhhhhhhcCccCccch
Confidence 99998776666555443
No 176
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.66 E-value=0.0027 Score=58.88 Aligned_cols=49 Identities=20% Similarity=0.315 Sum_probs=44.2
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHh
Q 003966 714 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 767 (783)
Q Consensus 714 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~ 767 (783)
.+.++++++++.++.+.|++.+.+.+||+|+ +++++|+||+.|+++...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~-----~~~~~Giv~~~dl~~~~~ 50 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDE-----KGKLIGNISASDLKGLLL 50 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECC-----CCcEEEEEEHHHhhhhhc
Confidence 4568999999999999999999999999997 789999999999987553
No 177
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=96.66 E-value=0.0025 Score=57.38 Aligned_cols=54 Identities=15% Similarity=0.253 Sum_probs=49.1
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHH
Q 003966 589 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 655 (783)
Q Consensus 589 l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl 655 (783)
.++.++|.+ +..++++++++.++++.+.+.+.+.+||++++ ++++|+|+.+|++
T Consensus 58 ~~v~~i~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~-----------~~~~Gvvs~~dl~ 111 (113)
T cd04587 58 TLVERVMTP--NPVCATSDTPVLEALHLMVQGKFRHLPVVDKS-----------GQVVGLLDVTKLT 111 (113)
T ss_pred CCHHHhcCC--CCeEEcCCCCHHHHHHHHHHcCCCcccEECCC-----------CCEEEEEEHHHhc
Confidence 568899988 88899999999999999999998899999986 7999999999985
No 178
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=96.63 E-value=0.0029 Score=72.72 Aligned_cols=59 Identities=25% Similarity=0.358 Sum_probs=53.3
Q ss_pred ccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHh
Q 003966 704 YIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 767 (783)
Q Consensus 704 ~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~ 767 (783)
.++++++|++++.++.+++++.++.+.|++.+.+.+||+|+ +++++|+||.+|+++...
T Consensus 334 ~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~-----~~~~~Givt~~dl~~~~~ 392 (454)
T TIGR01137 334 NATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTE-----AGKVLGSVTLRELLSALF 392 (454)
T ss_pred cCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-----CCeEEEEEEHHHHHHHHh
Confidence 35678899999999999999999999999999999999997 789999999999987543
No 179
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.63 E-value=0.0039 Score=56.42 Aligned_cols=49 Identities=24% Similarity=0.261 Sum_probs=42.5
Q ss_pred CCeeecCCCCHHHHHHHHHHcC-CCEEEEeeccccCCCCcEEEEEehhhchhhHh
Q 003966 714 TPYTVIESMSVAKAMVLFRQVG-LRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 767 (783)
Q Consensus 714 ~p~tV~~~~sL~~a~~lf~~~g-lr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~ 767 (783)
+..++++++++.++.+.|.+.+ .+.+||+|+ +++++|+||.+|+++...
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~-----~~~~~G~v~~~dl~~~~~ 51 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDN-----EGRYVGIISLADLRAIPT 51 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcC-----CCcEEEEEEHHHHHHHHH
Confidence 3458899999999999998775 899999997 789999999999987653
No 180
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=96.61 E-value=0.0036 Score=56.07 Aligned_cols=57 Identities=23% Similarity=0.408 Sum_probs=50.3
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHH
Q 003966 587 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 656 (783)
Q Consensus 587 ~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~ 656 (783)
...++.++|.+ ++.++++++++.++++.+.+.+...+||+|++ +++.|+|+++++++
T Consensus 54 ~~~~v~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~-----------~~~~Gvi~~~di~~ 110 (111)
T cd04611 54 LQTPVGEVMSS--PLLTVPADTSLYDARQLMREHGIRHLVVVDDD-----------GELLGLLSQTDLLQ 110 (111)
T ss_pred CCcCHHHhcCC--CceEECCCCCHHHHHHHHHHcCCeEEEEECCC-----------CcEEEEEEhHHhhc
Confidence 34678899988 88999999999999999998888889999986 79999999999853
No 181
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.59 E-value=0.0035 Score=57.43 Aligned_cols=57 Identities=19% Similarity=0.416 Sum_probs=50.7
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHH
Q 003966 587 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 656 (783)
Q Consensus 587 ~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~ 656 (783)
...++.++|.+ ++.++++++++.++.+.|.+.+.+.+||+|++ ++++|+++++|++.
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~-----------g~~~Gvit~~dl~~ 121 (122)
T cd04635 65 ASPTVEKIMST--PVYSVTPDDSIATAVELMLEHDIGRLPVVNEK-----------DQLVGIVDRHDVLK 121 (122)
T ss_pred ccCcHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCeeeEEcCC-----------CcEEEEEEhHHhhc
Confidence 35668889988 88999999999999999999999999999986 89999999999853
No 182
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.59 E-value=0.005 Score=57.07 Aligned_cols=48 Identities=38% Similarity=0.491 Sum_probs=43.0
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhH
Q 003966 714 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 766 (783)
Q Consensus 714 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~ 766 (783)
++.++.+++++.++.++|.+.+.+.+||+|+ +++++|+||++|+.+..
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~G~it~~dl~~~~ 49 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDD-----NGKLTGIVTRHDIVDFV 49 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECC-----CCcEEEEEEHHHHHHHH
Confidence 3457899999999999999999999999997 78999999999998643
No 183
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=96.58 E-value=0.0039 Score=56.57 Aligned_cols=55 Identities=16% Similarity=0.345 Sum_probs=47.2
Q ss_pred cccccccccCCCeeEEcC--cccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHH
Q 003966 589 LTVGELIDAKPPVITLSG--IEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 656 (783)
Q Consensus 589 l~v~dvM~~~~~vv~l~~--~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~ 656 (783)
..++++|.+ +..++.. ++++.++++.|++++...+||+|++ ++++|+|++++++.
T Consensus 57 ~~v~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~-----------~~~~Gvit~~di~~ 113 (114)
T cd04602 57 TPLSEVMTP--REVLVVAPTGITLEEANEILRESKKGKLPIVNDD-----------GELVALVTRSDLKK 113 (114)
T ss_pred CCHHHhcCC--CceEEECCCCCCHHHHHHHHHhcCCCceeEECCC-----------CeEEEEEEHHHhhc
Confidence 347789987 6666755 9999999999999999999999876 79999999999853
No 184
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.56 E-value=0.0039 Score=56.24 Aligned_cols=49 Identities=27% Similarity=0.257 Sum_probs=43.9
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHh
Q 003966 714 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 767 (783)
Q Consensus 714 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~ 767 (783)
++.++++++++.++.+.|.+.+.+.+||+|+ +++++|+||.+|+.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~G~v~~~~l~~~~~ 50 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDD-----NGNLVGFLSEQDCLKQLL 50 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECC-----CCeEEEEeehHHHHHHhh
Confidence 4678999999999999999999999999997 789999999999987543
No 185
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.55 E-value=0.0036 Score=56.21 Aligned_cols=54 Identities=17% Similarity=0.263 Sum_probs=48.8
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHH
Q 003966 589 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 655 (783)
Q Consensus 589 l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl 655 (783)
..+.++|.. ++.++++++++.++.+.|.+++.+.+||+|++ ++++|+|+++|+.
T Consensus 56 ~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----------~~~~G~it~~dl~ 109 (111)
T cd04639 56 APVRGVMRR--DFPTVSPSATLDAVLRLMQQGGAPAVPVVDGS-----------GRLVGLVTLENVG 109 (111)
T ss_pred CcHHHHhcC--CCcEECCCCcHHHHHHHHHhcCCceeeEEcCC-----------CCEEEEEEHHHhh
Confidence 357888988 88999999999999999999999999999876 7899999999985
No 186
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=96.54 E-value=0.0043 Score=55.42 Aligned_cols=54 Identities=24% Similarity=0.378 Sum_probs=48.7
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHH
Q 003966 589 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 655 (783)
Q Consensus 589 l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl 655 (783)
.++.++|.+ +..++++++++.++.+.+.+.+.+.+||+|++ ++++|+|++++++
T Consensus 54 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~-----------g~~~Gvit~~~l~ 107 (109)
T cd04583 54 KSLEDIMLE--DVFTVQPDASLRDVLGLVLKRGPKYVPVVDED-----------GKLVGLITRSSLV 107 (109)
T ss_pred CcHhHhhcC--CceEECCCCcHHHHHHHHHHcCCceeeEECCC-----------CeEEEEEehHHhh
Confidence 357788988 88899999999999999999899999999986 7999999999985
No 187
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.53 E-value=0.0044 Score=55.80 Aligned_cols=54 Identities=24% Similarity=0.537 Sum_probs=48.5
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHH
Q 003966 588 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 655 (783)
Q Consensus 588 ~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl 655 (783)
+.++.++|.+ ++..+++++++.++++.|.+.+.+.+||+|+ ++++|+|+++|++
T Consensus 57 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------------~~~~Gvi~~~di~ 110 (112)
T cd04802 57 EVPVGEVMST--PLITIDPNASLNEAAKLMAKHGIKRLPVVDD------------DELVGIVTTTDIV 110 (112)
T ss_pred cCCHHHhcCC--CcEEECCCCCHHHHHHHHHHcCCCeeEEeeC------------CEEEEEEEhhhhh
Confidence 4578899988 8889999999999999999999999999986 4899999999985
No 188
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=96.52 E-value=0.004 Score=55.69 Aligned_cols=55 Identities=18% Similarity=0.314 Sum_probs=47.4
Q ss_pred ccccccccccCCCeeEEcC-cccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHH
Q 003966 588 TLTVGELIDAKPPVITLSG-IEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 655 (783)
Q Consensus 588 ~l~v~dvM~~~~~vv~l~~-~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl 655 (783)
+.++.++|.+ ++..+.+ ++++.++++.+.+.+++.+||+|++ ++++|+|+++|++
T Consensus 53 ~~~v~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----------~~~~Gvi~~~dil 108 (110)
T cd04601 53 DKPVSEVMTP--ENLLTTVEGTSLEEALELLHEHKIEKLPVVDDE-----------GKLKGLITVKDIE 108 (110)
T ss_pred CCCHHHhccc--CceEEecCCCCHHHHHHHHHHhCCCeeeEEcCC-----------CCEEEEEEhhhhh
Confidence 3568889977 5566666 9999999999999999999999976 7999999999985
No 189
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.51 E-value=0.0044 Score=71.09 Aligned_cols=56 Identities=23% Similarity=0.328 Sum_probs=51.1
Q ss_pred ccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchh
Q 003966 704 YIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRA 764 (783)
Q Consensus 704 ~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~ 764 (783)
.+.+.++|.++|.++++++++.++.++|++.+.+.+||+|+ +++++|+||.+|+..
T Consensus 88 ~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~-----~gklvGIVT~rDL~~ 143 (479)
T PRK07807 88 WVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDE-----EGRPVGVVTEADCAG 143 (479)
T ss_pred hcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECC-----CCeEEEEEeHHHHhc
Confidence 35667889999999999999999999999999999999997 789999999999853
No 190
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=96.51 E-value=0.0055 Score=55.02 Aligned_cols=50 Identities=12% Similarity=0.122 Sum_probs=44.4
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCC-CcEEEEEehhhchhhHhh
Q 003966 714 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV-SPVVGILTRQDLRAFNIL 768 (783)
Q Consensus 714 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~-~~vvGIITr~DLl~~~~~ 768 (783)
+..++++++++.++.++|.+.+.+.+||+|+ + ++++|++|.+|+++....
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~-----~~~~~~G~v~~~~l~~~~~~ 52 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDG-----DLDNIIGVVHVKDLLRALAE 52 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECC-----CCceEEEEEEHHHHHHHHHc
Confidence 4568999999999999999999999999997 6 899999999999886543
No 191
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.51 E-value=0.0036 Score=56.34 Aligned_cols=55 Identities=24% Similarity=0.445 Sum_probs=49.3
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHH
Q 003966 589 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 656 (783)
Q Consensus 589 l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~ 656 (783)
.++.++|.+ +..++++++++.++++.|.+.+...+||+|++ ++++|+|++.|+++
T Consensus 58 ~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~G~it~~di~~ 112 (113)
T cd04622 58 TTVGDVMTR--GVVTVTEDDDVDEAARLMREHQVRRLPVVDDD-----------GRLVGIVSLGDLAR 112 (113)
T ss_pred CCHHHhccC--CccEECCCCCHHHHHHHHHHcCCCeeeEECCC-----------CcEEEEEEHHHhhc
Confidence 358899988 88899999999999999999999999999876 79999999999854
No 192
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=96.50 E-value=0.0035 Score=66.63 Aligned_cols=58 Identities=22% Similarity=0.288 Sum_probs=52.8
Q ss_pred ccCccccccCC-CeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhH
Q 003966 704 YIDLHPLTNTT-PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 766 (783)
Q Consensus 704 ~~dl~~im~~~-p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~ 766 (783)
.+.++++|+++ +.++.+++++.++.+.|++.+.+.+||+|+ +++++|+||.+|+.+..
T Consensus 154 ~~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~-----~g~~~Givt~~dl~~~~ 212 (268)
T TIGR00393 154 LVKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE-----NNQLVGVFTDGDLRRAL 212 (268)
T ss_pred hhhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC-----CCCEEEEEEcHHHHHHH
Confidence 46788999888 899999999999999999999999999997 78999999999998753
No 193
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.50 E-value=0.0043 Score=57.05 Aligned_cols=56 Identities=20% Similarity=0.415 Sum_probs=50.1
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHH
Q 003966 588 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 656 (783)
Q Consensus 588 ~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~ 656 (783)
..++.++|.+ ++.++++++++.++.+.+.+.+.+.+||+|++ ++++|+|+++|+++
T Consensus 69 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~-----------~~~~Gvit~~di~~ 124 (125)
T cd04631 69 NEPVRSIMTR--NVITITPDDSIKDAAELMLEKRVGGLPVVDDD-----------GKLVGIVTERDLLK 124 (125)
T ss_pred hcCHHHHhcC--CceEeCCCCcHHHHHHHHHHcCCceEEEEcCC-----------CcEEEEEEHHHhhc
Confidence 4568889988 89999999999999999999999999999875 79999999999854
No 194
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.48 E-value=0.0049 Score=70.59 Aligned_cols=57 Identities=25% Similarity=0.338 Sum_probs=51.1
Q ss_pred hccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCC---CcEEEEEehhhchh
Q 003966 703 MYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV---SPVVGILTRQDLRA 764 (783)
Q Consensus 703 ~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~---~~vvGIITr~DLl~ 764 (783)
...++++.|.+++.++++++++.++.++|++.+.+.+||+|+ + ++++|+||++|+..
T Consensus 78 ~Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~-----~~~~~~lvGIVt~rDL~~ 137 (450)
T TIGR01302 78 RVKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVED-----GDMTGKLVGIITKRDIRF 137 (450)
T ss_pred hhccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeC-----CCCCCeEEEEEEHHHHhh
Confidence 345667788899999999999999999999999999999997 5 69999999999974
No 195
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=96.48 E-value=0.0041 Score=55.87 Aligned_cols=55 Identities=25% Similarity=0.364 Sum_probs=49.5
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHH
Q 003966 588 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 656 (783)
Q Consensus 588 ~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~ 656 (783)
+.++.++|.+ ++.++++++++.++++.|.+++.+.+||+++ ++++|+++++|++.
T Consensus 56 ~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------------~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVMTA--PPITIPPDATVFEALLLMLERGIHHLPVVDD------------GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHhCC--CCeEECCCCcHHHHHHHHHHcCCCeeeEeEC------------CEEEEEEEHHHhhc
Confidence 3568899988 8889999999999999999999999999986 68999999999864
No 196
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=96.47 E-value=0.0048 Score=55.34 Aligned_cols=54 Identities=19% Similarity=0.325 Sum_probs=48.6
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHH
Q 003966 589 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 655 (783)
Q Consensus 589 l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl 655 (783)
.++.++|.+ ++.++++++++.++++.|.+.+.+.+||+|++ +++.|+|+++|++
T Consensus 55 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~G~i~~~dl~ 108 (110)
T cd04588 55 AKVKDVMTK--DVITIDEDEQLYDAIRLMNKHNVGRLIVTDDE-----------GRPVGIITRTDIL 108 (110)
T ss_pred cCHHHHhcC--CceEECCCCCHHHHHHHHHhcCCCEEEEECCC-----------CCEEEEEEhHHhh
Confidence 457788887 88999999999999999999998999999886 7999999999985
No 197
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.46 E-value=0.0046 Score=57.78 Aligned_cols=49 Identities=20% Similarity=0.175 Sum_probs=44.0
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHh
Q 003966 714 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 767 (783)
Q Consensus 714 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~ 767 (783)
++.++.+++++.++.+.|++.+.+++||+|+ +++++|+|+++|+++...
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~-----~~~~~G~i~~~~l~~~~~ 50 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDN-----EGRVVGIVSEGDLIRKIY 50 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECC-----CCCEEEEEeHHHHHHHHh
Confidence 4568999999999999999999999999997 789999999999987543
No 198
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.46 E-value=0.0053 Score=55.12 Aligned_cols=54 Identities=19% Similarity=0.382 Sum_probs=48.9
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHH
Q 003966 588 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 655 (783)
Q Consensus 588 ~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl 655 (783)
..++.++|.+ ++.++++++++.++++.|.+.+.+.+||+| + ++++|+|++.|++
T Consensus 55 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-----------~~~~Gvvt~~di~ 108 (110)
T cd04595 55 HAPVKDYMST--DVVTVPPDTPLSEVQELMVEHDIGRVPVVE-D-----------GRLVGIVTRTDLL 108 (110)
T ss_pred cCcHHHHhcC--CCEEECCCCcHHHHHHHHHHcCCCeeEEEe-C-----------CEEEEEEEhHHhh
Confidence 4568899988 888999999999999999999999999998 4 7999999999985
No 199
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.45 E-value=0.0043 Score=58.26 Aligned_cols=55 Identities=22% Similarity=0.462 Sum_probs=49.8
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHH
Q 003966 588 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 656 (783)
Q Consensus 588 ~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~ 656 (783)
..++.++|.+ ++.++.+++++.++++.|.+.+.+.+||+| + ++++|+|+++|+++
T Consensus 80 ~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~-----------g~~~Gvit~~di~~ 134 (135)
T cd04586 80 GRKVADVMTR--PVVTVGEDTPLAEVAELMEEHRIKRVPVVR-G-----------GRLVGIVSRADLLR 134 (135)
T ss_pred CCCHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCccCEec-C-----------CEEEEEEEhHhhhc
Confidence 4578899988 889999999999999999999999999999 5 89999999999853
No 200
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=96.43 E-value=0.0084 Score=53.09 Aligned_cols=51 Identities=31% Similarity=0.287 Sum_probs=44.8
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHhhh
Q 003966 714 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT 769 (783)
Q Consensus 714 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~~~ 769 (783)
++.++++++++.++.+.|.+.+.+++||+|+ +++++|+++++|+++.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~G~v~~~~l~~~~~~~ 52 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDD-----DGRLVGIVTERDLLRALAEG 52 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECC-----CCCEEEEEeHHHHHHHHHhc
Confidence 4567899999999999999999999999997 68999999999999866543
No 201
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=96.39 E-value=0.0059 Score=54.90 Aligned_cols=55 Identities=18% Similarity=0.262 Sum_probs=49.0
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHH
Q 003966 588 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 656 (783)
Q Consensus 588 ~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~ 656 (783)
..+++++|.+ +...+++++++.++++.|.+++...+||+|+ ++++|+|++++++.
T Consensus 56 ~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------------~~~~G~it~~dl~~ 110 (111)
T cd04589 56 STPVGEIATF--PLITVDPDDFLFNALLLMTRHRIHRVVVREG------------GEVVGVLEQTDLLS 110 (111)
T ss_pred CCCHHHHhCC--CcEEECCCCcHHHHHHHHHHhCccEEEEeeC------------CEEEEEEEhHHhhc
Confidence 3468889988 8889999999999999999999999999986 68999999999853
No 202
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=96.38 E-value=0.0056 Score=55.03 Aligned_cols=49 Identities=27% Similarity=0.379 Sum_probs=44.4
Q ss_pred ccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHH
Q 003966 594 LIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 656 (783)
Q Consensus 594 vM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~ 656 (783)
+|.+ ++.++++++++.++.+.|.+++.+.+||+++ ++++|+|+++++.+
T Consensus 56 ~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~------------~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDP--SPFTVSPRTSLEKVHQLFRKLGLRHLLVVDE------------GRLVGIITRKDLLK 104 (105)
T ss_pred hccC--CCceECCCCcHHHHHHHHHHcCCCEEEEEEC------------CeEEEEEEhhhhhc
Confidence 7877 8889999999999999999999999999964 79999999999854
No 203
>COG0517 FOG: CBS domain [General function prediction only]
Probab=96.38 E-value=0.0061 Score=55.17 Aligned_cols=52 Identities=21% Similarity=0.444 Sum_probs=48.4
Q ss_pred ccccccccCCCeeEEcCcccHHHHHHHHhc-CCCCeeeeecCCCCCCCCCCCCCC-eEEEEEeHHHH
Q 003966 590 TVGELIDAKPPVITLSGIEKVSQIVDVLRN-TTHNGFPVLDEGVVPPSGLANVAT-ELHGLILRAHL 654 (783)
Q Consensus 590 ~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~-t~~~~fPVVd~~~~~~~~~~~~~~-~l~GiI~r~dL 654 (783)
++.++|.+ +++++.+++++.++.+.|.+ .+++.+||+|++ + +++|++++.|+
T Consensus 63 ~v~~v~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~-----------~~~lvGivt~~di 116 (117)
T COG0517 63 PVKEVMTK--PVVTVDPDTPLEEALELMVERHKIRRLPVVDDD-----------GGKLVGIITLSDI 116 (117)
T ss_pred cHHHhccC--CcEEECCCCCHHHHHHHHHHHcCcCeEEEEECC-----------CCeEEEEEEHHHc
Confidence 68999998 89999999999999999999 699999999986 5 99999999986
No 204
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=96.36 E-value=0.0067 Score=54.33 Aligned_cols=55 Identities=22% Similarity=0.398 Sum_probs=49.4
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHH
Q 003966 589 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 656 (783)
Q Consensus 589 l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~ 656 (783)
+++.++|.+ ++.++.+++++.++++.|.+++.+.+||+|++ ++++|+|+..|+.+
T Consensus 56 ~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~G~it~~di~~ 110 (111)
T cd04612 56 VLVGDVMTR--DPVTASPDETLRDALKRMAERDIGRLPVVDDS-----------GRLVGIVSRSDLLR 110 (111)
T ss_pred cCHHHhccC--CCeEECCCCCHHHHHHHHHhCCCCeeeEEcCC-----------CCEEEEEEHHHhhh
Confidence 467788988 89999999999999999999998999999876 79999999999853
No 205
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.34 E-value=0.0052 Score=56.14 Aligned_cols=56 Identities=29% Similarity=0.587 Sum_probs=50.1
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHH
Q 003966 587 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 656 (783)
Q Consensus 587 ~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~ 656 (783)
...++.++|.+ +..++++++++.++++.|.+.+.+.+||+|+ ++++|+|+++|+++
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------------~~~~Gvi~~~dl~~ 120 (121)
T cd04633 65 RNLPVSDIMTR--PVITIEPDTSVSDVASLMLENNIGGLPVVDD------------GKLVGIVTRTDILR 120 (121)
T ss_pred hccCHHHHccC--CceEECCCCcHHHHHHHHHHcCCCcccEEEC------------CEEEEEEEHHHhhc
Confidence 45678899988 8899999999999999999999999999986 68999999999853
No 206
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=96.34 E-value=0.0064 Score=70.27 Aligned_cols=62 Identities=16% Similarity=0.280 Sum_probs=55.1
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003966 588 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 660 (783)
Q Consensus 588 ~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~ 660 (783)
+.++.++|++.++++++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|+++.+..
T Consensus 162 ~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~-----------g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 162 ETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNED-----------GELVDLVTRTDVKRVKGY 223 (505)
T ss_pred CCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----------CeEEEEEEHHHHHHHhhC
Confidence 46789999973348899999999999999999999999999986 799999999999987754
No 207
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=96.32 E-value=0.0065 Score=69.67 Aligned_cols=59 Identities=17% Similarity=0.289 Sum_probs=53.8
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003966 589 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 660 (783)
Q Consensus 589 l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~ 660 (783)
.+++++|++ +++++++++++.++++.|.+++.+.+||+|++ ++++|+|+++||++....
T Consensus 146 ~~V~dIMt~--~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~-----------g~LvGIIT~~DLl~~~~~ 204 (475)
T TIGR01303 146 TQVRDIMST--DLVTAPADTEPRKAFDLLEHAPRDVAPLVDAD-----------GTLAGILTRTGALRATIY 204 (475)
T ss_pred CCHHHHccC--CceEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CeEEEEEEHHHHHHHHhC
Confidence 468899998 99999999999999999999999999999976 899999999999886544
No 208
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.32 E-value=0.0094 Score=53.57 Aligned_cols=48 Identities=17% Similarity=0.206 Sum_probs=43.1
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhH
Q 003966 714 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 766 (783)
Q Consensus 714 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~ 766 (783)
++.++++++++.++.+.|.+.+.+.+||+|+ +++++|+++.+|+....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-----~~~~~G~v~~~dl~~~~ 49 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDN-----EEKLKGVVTFTDILDLD 49 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcC-----CCCEEEEEehHHhHHHH
Confidence 3568899999999999999999999999997 78999999999998643
No 209
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=96.31 E-value=0.0067 Score=55.35 Aligned_cols=48 Identities=35% Similarity=0.529 Sum_probs=43.2
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhH
Q 003966 714 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 766 (783)
Q Consensus 714 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~ 766 (783)
++.++++++++.++.+.|.+.+.+++||+|+ +++++|+++.+|+.+..
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~-----~~~~~G~v~~~~l~~~~ 49 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDE-----EGRLVGIVTDRDLRDAS 49 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECC-----CCcEEEEEEHHHHHHHh
Confidence 4568999999999999999999999999997 78999999999987643
No 210
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.29 E-value=0.0072 Score=53.58 Aligned_cols=53 Identities=21% Similarity=0.358 Sum_probs=48.0
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHH
Q 003966 589 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 655 (783)
Q Consensus 589 l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl 655 (783)
.++.++|.+ +..++++++++.++++.|.+++...+||+|+ ++++|+|++++++
T Consensus 51 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------------~~~~G~it~~~l~ 103 (105)
T cd04599 51 RLVADAMTR--EVVTISPEASLLEAKRLMEEKKIERLPVLRE------------RKLVGIITKGTIA 103 (105)
T ss_pred CCHHHHccC--CCEEECCCCCHHHHHHHHHHcCCCEeeEEEC------------CEEEEEEEHHHhc
Confidence 357788988 8889999999999999999999999999986 7999999999984
No 211
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=96.21 E-value=0.0083 Score=53.47 Aligned_cols=53 Identities=13% Similarity=0.201 Sum_probs=47.0
Q ss_pred ccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHH
Q 003966 590 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 656 (783)
Q Consensus 590 ~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~ 656 (783)
++.++|.+ +..++++++++.++++.|.+++.+.+||+|+ ++++|+|+++|+..
T Consensus 51 ~~~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~------------~~~iGvit~~dl~~ 103 (104)
T cd04594 51 DVVDYIVR--GIPYVRLTSTAEEAWEVMMKNKTRWCPVVDD------------GKFKGIVTLDSILD 103 (104)
T ss_pred chhhhhhc--CCcEEcCCCCHHHHHHHHHHcCcceEEEEEC------------CEEEEEEEHHHhhc
Confidence 46678877 7889999999999999999999999999984 79999999999853
No 212
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=96.11 E-value=0.012 Score=52.57 Aligned_cols=48 Identities=29% Similarity=0.328 Sum_probs=42.5
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHh
Q 003966 714 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 767 (783)
Q Consensus 714 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~ 767 (783)
++.++++++++.++.+.|++.+.+++||+| +++++|++|++|+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~------~~~~~G~v~~~dl~~~~~ 49 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVD------DGRVVGSIDESDLLDALI 49 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEee------CCeeEEEEeHHHHHHHHh
Confidence 356899999999999999999999999998 378999999999988643
No 213
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.11 E-value=0.0095 Score=54.53 Aligned_cols=55 Identities=24% Similarity=0.318 Sum_probs=49.5
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHH
Q 003966 589 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 656 (783)
Q Consensus 589 l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~ 656 (783)
.++.++|.+ ++..+++++++.++.+.+.+.+.+.+||+|++ ++++|+++++|++.
T Consensus 67 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~-----------~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIMTR--DPITVSPDTPVDEASKLLLENSISCLPVVDEN-----------GQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhhcC--CCeeeCCCCcHHHHHHHHHHcCCCeEeEECCC-----------CCEEEEEEHHHhhh
Confidence 468899988 89999999999999999999998999999886 79999999999864
No 214
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=96.10 E-value=0.01 Score=63.27 Aligned_cols=62 Identities=19% Similarity=0.319 Sum_probs=56.7
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003966 586 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 660 (783)
Q Consensus 586 l~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~ 660 (783)
.++.++..+|++ ++.++.+.++|..+.+.|--.+.+-+||+|++ .+++|+|+|+|+++.|+.
T Consensus 246 ~~~t~ieKVMtk--np~tv~~~tsVAsvaq~MiwE~iem~PVv~~n-----------~~llGiitR~dvlk~lq~ 307 (432)
T COG4109 246 KPSTTIEKVMTK--NPITVRAKTSVASVAQMMIWEGIEMLPVVDSN-----------NTLLGIITRQDVLKSLQM 307 (432)
T ss_pred CCCccHHHHhcc--CCeeecccchHHHHHHHHHhccceeeeEEcCC-----------ceEEEEEEHHHHHHHHHH
Confidence 356778889999 99999999999999999999999999999997 899999999999998865
No 215
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=95.93 E-value=0.011 Score=68.41 Aligned_cols=55 Identities=18% Similarity=0.314 Sum_probs=47.3
Q ss_pred ccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhch
Q 003966 707 LHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLR 763 (783)
Q Consensus 707 l~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl 763 (783)
..+.|..+|.++.+++++.++.++|++.+.+.+||+|+ ...+++++||||.+|+.
T Consensus 98 ~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~--~~~~gkLvGIVt~~DL~ 152 (495)
T PTZ00314 98 FENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVD--GKVGGKLLGIVTSRDID 152 (495)
T ss_pred cccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeC--CccCCeEEEEEEHHHHh
Confidence 45667789999999999999999999999999999986 01127899999999985
No 216
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=95.87 E-value=0.012 Score=66.47 Aligned_cols=56 Identities=14% Similarity=0.220 Sum_probs=49.4
Q ss_pred CccccccC--CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhh
Q 003966 706 DLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 765 (783)
Q Consensus 706 dl~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~ 765 (783)
.++++|.+ ++++++.+++++++.+++++.+.+++||.++ +.++++|||+.+|++..
T Consensus 192 ~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~----~~d~ivGiv~~kDll~~ 249 (408)
T TIGR03520 192 DTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKE----TIDNITGVLYIKDLLPH 249 (408)
T ss_pred EeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcC----CCCceEEEEEHHHHHhH
Confidence 46788876 6789999999999999999999999999975 23689999999999864
No 217
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.74 E-value=0.018 Score=54.78 Aligned_cols=48 Identities=21% Similarity=0.329 Sum_probs=42.8
Q ss_pred CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHh
Q 003966 714 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 767 (783)
Q Consensus 714 ~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~ 767 (783)
+++++++++++.++.+.|++.+...+||+|+ ++++|++|++|+++...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~------~~~~G~v~~~dl~~~~~ 49 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG------GKLVGIVSESDILKLLV 49 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC------CeEEEEecHHHHHHHHH
Confidence 5678999999999999999999999999983 68999999999987543
No 218
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=95.67 E-value=0.029 Score=64.08 Aligned_cols=97 Identities=23% Similarity=0.163 Sum_probs=72.6
Q ss_pred HHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHHhhc-----------c-CCcchHHHHHHHhhhhhhhhhchhHHH
Q 003966 463 ILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGS-----------Y-TNIDQGLYAVLGAASLMAGSMRMTVSL 530 (783)
Q Consensus 463 ~~k~~lt~~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~-----------~-~~~~~~~~alvGaaa~l~g~~r~pis~ 530 (783)
+.|.+-.+.+.+.|.-.|--.|.+-.||+.+..+||-=.. + ..-|-.=+..+|+||..+++.|+|+..
T Consensus 190 ~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S~~~r~~~r~fr~FrnDrdrRD~VscGaAAGVaAAF~APvGG 269 (762)
T KOG0474|consen 190 IVKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGSTSLRKDWRWFRYFRNDRDRRDLVSCGAAAGVAAAFRAPVGG 269 (762)
T ss_pred HHhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCccchhhhhhhhhhhcccchhhhhhhcchHHhHHHHhCCCccc
Confidence 3688889999999999999999999999999999874221 1 234556688999999999999999999
Q ss_pred HHHHHHHhCCc---hhHHHHHHHHHHHHHHHh
Q 003966 531 CVIFLELTNNL---LLLPITMIVLLIAKTVGD 559 (783)
Q Consensus 531 ~vi~~ElTg~~---~~l~pimia~~ia~~v~~ 559 (783)
+++.+|-.-++ .++.=+..+++++..+-+
T Consensus 270 vLFaLEE~aS~Wnq~L~WR~fFss~i~~f~l~ 301 (762)
T KOG0474|consen 270 VLFALEEGASWWNQALLWRTFFSSAIVAFVLR 301 (762)
T ss_pred eEEEechhhHHHHhhHHHHHHHHhHHHHHhHH
Confidence 99999965433 233333444444443333
No 219
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=95.63 E-value=0.017 Score=62.26 Aligned_cols=57 Identities=14% Similarity=0.226 Sum_probs=49.8
Q ss_pred CccccccC--CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhH
Q 003966 706 DLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 766 (783)
Q Consensus 706 dl~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~ 766 (783)
.++++|.+ ...++++++++.++.+.+++.+.+++||+++ +.++++|+|+.+|++...
T Consensus 68 ~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~----~~d~iiGiv~~kDll~~~ 126 (292)
T PRK15094 68 RVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE----DKDHIEGILMAKDLLPFM 126 (292)
T ss_pred EEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecC----CCCcEEEEEEHHHHHhHh
Confidence 56888987 6889999999999999999999999999986 127899999999998643
No 220
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.52 E-value=0.018 Score=61.14 Aligned_cols=112 Identities=21% Similarity=0.210 Sum_probs=76.6
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhh
Q 003966 587 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQE 666 (783)
Q Consensus 587 ~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~ 666 (783)
+-++++++|.+..+...-.+...-....+.+++.....+.+++.. ++.+|+|...++...
T Consensus 272 ~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~-----------~~~~g~v~~~~~~~~--------- 331 (386)
T COG4175 272 RVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRG-----------NKFVGVVSIDSLVKA--------- 331 (386)
T ss_pred heeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhcc-----------CceeeEEeccchhcc---------
Confidence 456788888741122222223333455566666655555566654 668888886665321
Q ss_pred hccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccc
Q 003966 667 KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE 746 (783)
Q Consensus 667 ~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~ 746 (783)
.+++.+.++..++++.+.....++.+. .++|+|+
T Consensus 332 -------------------------------------------~~~~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde-- 365 (386)
T COG4175 332 -------------------------------------------ALIDDVLTVDADTPLSEILARIRQAPC-PVAVVDE-- 365 (386)
T ss_pred -------------------------------------------cccccccccCccchHHHHHHHHhcCCC-ceeEEcC--
Confidence 123556688999999999999998877 7899998
Q ss_pred cCCCCcEEEEEehhhchhhHh
Q 003966 747 AAGVSPVVGILTRQDLRAFNI 767 (783)
Q Consensus 747 ~~~~~~vvGIITr~DLl~~~~ 767 (783)
+++++|+|++..+++...
T Consensus 366 ---~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 366 ---DGRYVGIISRGELLEALA 383 (386)
T ss_pred ---CCcEEEEecHHHHHHHHh
Confidence 899999999999988754
No 221
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=95.50 E-value=0.026 Score=51.28 Aligned_cols=55 Identities=11% Similarity=0.140 Sum_probs=46.2
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCC---eeeeecCCCCCCCCCCCCCCeEEEEEeHHHHH
Q 003966 588 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHN---GFPVLDEGVVPPSGLANVATELHGLILRAHLV 655 (783)
Q Consensus 588 ~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~---~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl 655 (783)
+.+++++|.+ ++..+++++++.++.+.|.+.+.. ..||++++ ++++|+|++.+++
T Consensus 60 ~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~-----------~~~~Gvvs~~di~ 117 (119)
T cd04598 60 KKPVSEVMDP--DPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEE-----------GRYLGIGTVKDLL 117 (119)
T ss_pred CCcHHHhcCC--CcEEecCCCCHHHHHHHHHcCCcccccccEEEeeC-----------CeEEEEEEHHHHh
Confidence 4568899988 899999999999999999877642 34688776 8999999999985
No 222
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=95.29 E-value=0.042 Score=61.48 Aligned_cols=49 Identities=12% Similarity=0.248 Sum_probs=41.6
Q ss_pred cCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHh
Q 003966 712 NTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 767 (783)
Q Consensus 712 ~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~ 767 (783)
.+...+|++++++.+++....+.+. -++|+| +|+++|+|++.++++...
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~------~~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 332 EAAPTVINPDTLMRDVLAARHRTGG-AILLVE------NGRIVGVIGDDNIYHALL 380 (382)
T ss_pred cccCcccCCCCcHHHHHHHHhcCCC-CeEEee------CCeEEEEEeHHHHHHHHh
Confidence 4556789999999999999988776 478887 489999999999998764
No 223
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.21 E-value=0.045 Score=48.65 Aligned_cols=45 Identities=27% Similarity=0.314 Sum_probs=40.4
Q ss_pred CeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchh
Q 003966 715 PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRA 764 (783)
Q Consensus 715 p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~ 764 (783)
..++..++++.++...|.+.+.+.+||+++ +++++|+++++|+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~g~v~~~~l~~ 47 (106)
T cd04638 3 VVYVTLPGTRDDVLELLKEYKVSGVPVVKK-----SGELVGIITRKDLLR 47 (106)
T ss_pred cEEECCCCCHHHHHHHHHHcCCCeEEEEcC-----CCcEEEEEEHHHHHh
Confidence 357888999999999999999999999997 689999999999875
No 224
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=94.57 E-value=0.044 Score=62.17 Aligned_cols=61 Identities=15% Similarity=0.314 Sum_probs=56.5
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003966 587 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 660 (783)
Q Consensus 587 ~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~ 660 (783)
.+..++|+|.+ +++++.++++-+++.+.+++++.-..||||++ ++++|+|+.+|++..++.
T Consensus 194 ~~~~i~~im~~--~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~-----------~~LiG~itiDDiidvi~e 254 (451)
T COG2239 194 PDELLKDLMED--DVVSVLADDDQEEVARLFEKYDLLAVPVVDED-----------NRLIGIITIDDIIDVIEE 254 (451)
T ss_pred cHhHHHHHhcc--cceeecccCCHHHHHHHHHHhCCeecceECCC-----------CceeeeeeHHHHHHHHHH
Confidence 35678899999 89999999999999999999999999999997 899999999999998875
No 225
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=94.17 E-value=0.089 Score=58.51 Aligned_cols=57 Identities=23% Similarity=0.317 Sum_probs=50.5
Q ss_pred ccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003966 590 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 660 (783)
Q Consensus 590 ~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~ 660 (783)
.+.+.|.+ +..++++++++.+++..+.++++. +||+|++ ++++|+|++.+++..|.+
T Consensus 303 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~-----------~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 303 GLQDVLID--DIYTVDAGTLLRETVRKVLKAGIK-VPVVDED-----------QRLVGIVTRGSLVDALYD 359 (363)
T ss_pred chhhhhcc--CCceECCCCcHHHHHHHHHhCCCC-EEEECCC-----------CcEEEEEEHHHHHHHHHh
Confidence 46677777 788999999999999999999988 9999987 899999999999987754
No 226
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=92.20 E-value=0.27 Score=55.47 Aligned_cols=57 Identities=18% Similarity=0.336 Sum_probs=49.1
Q ss_pred ccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003966 590 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 660 (783)
Q Consensus 590 ~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~ 660 (783)
++.+.+.+ +..++++++++.+++..+.++.+. +||+|++ ++++|+|++.+++..|..
T Consensus 338 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~-----------~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 338 GLDAALID--APLAVDAQTPLSELLSHVGQAPCA-VPVVDED-----------QQYVGIISKGMLLRALDR 394 (400)
T ss_pred chhhhhcc--CCceeCCCCCHHHHHHHHHhCCCc-EEEECCC-----------CcEEEEEEHHHHHHHHHh
Confidence 45666766 788999999999999999887665 9999987 999999999999988765
No 227
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=91.40 E-value=0.26 Score=56.97 Aligned_cols=135 Identities=18% Similarity=0.135 Sum_probs=88.9
Q ss_pred ccccccccccccCCCeeEEcCcccHH-HHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhh
Q 003966 586 MRTLTVGELIDAKPPVITLSGIEKVS-QIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL 664 (783)
Q Consensus 586 l~~l~v~dvM~~~~~vv~l~~~~~v~-~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~ 664 (783)
+....++|+|++-.++..+..+.++. +......+.+|+.+||.+.+ . ..-+|......++.++....
T Consensus 201 l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~---------~-~~~i~~~L~~~~~~~~~~~~-- 268 (498)
T KOG2118|consen 201 LTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQE---------P-KNKIGGLLVMNLLRLLQVEV-- 268 (498)
T ss_pred HHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCc---------c-cchhhHHHHhhhhhhhcccc--
Confidence 56778999999866777777777666 44445668899999999875 1 33444433333333222110
Q ss_pred hhhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeec
Q 003966 665 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK 744 (783)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~ 744 (783)
.....++...+......+++++++.+..+.|++... |+.|+.+
T Consensus 269 ------------------------------------~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~-H~~~v~~ 311 (498)
T KOG2118|consen 269 ------------------------------------PLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKS-HMAVVRN 311 (498)
T ss_pred ------------------------------------ccccccchhhhccccccCCCcccHHHHHHHHhhhhc-eeEEEec
Confidence 001123455566777789999999999999986665 6666665
Q ss_pred cccCCCCcEEEEEehhhchhhHhhhhCCccc
Q 003966 745 YEAAGVSPVVGILTRQDLRAFNILTAFPHLE 775 (783)
Q Consensus 745 ~~~~~~~~vvGIITr~DLl~~~~~~~~~~l~ 775 (783)
..--++++|..|+ .+...+...+..
T Consensus 312 -----~~~~~~~~~l~~~-~~~~~ev~de~d 336 (498)
T KOG2118|consen 312 -----GHVDIFVLTLEDL-EEVVKEVEDEED 336 (498)
T ss_pred -----CCcceeeEeccch-hhhcceeccccc
Confidence 4557999999998 666555554443
No 228
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=90.73 E-value=0.26 Score=53.89 Aligned_cols=57 Identities=19% Similarity=0.340 Sum_probs=51.3
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHH
Q 003966 588 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLA 657 (783)
Q Consensus 588 ~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~l 657 (783)
+.-+.|+|++ +.++.+...++.++-++|++++...+||||++ ++++-+|+|.||.+.
T Consensus 170 ~~~~~~vmt~--~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~-----------gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 170 SLLVSDVMTK--NPVTGAQGITLKEANEILKKIKKGKLPVVDDK-----------GELVAMLSRTDLMKN 226 (503)
T ss_pred cchhhhhccc--ccccccccccHHHHHHHHHhhhcCCcceeccC-----------Cceeeeeehhhhhhh
Confidence 4567899999 66888999999999999999999999999997 999999999999654
No 229
>PRK11573 hypothetical protein; Provisional
Probab=90.73 E-value=0.47 Score=53.81 Aligned_cols=57 Identities=2% Similarity=0.005 Sum_probs=47.2
Q ss_pred CccccccC--CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhH
Q 003966 706 DLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 766 (783)
Q Consensus 706 dl~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~ 766 (783)
.++++|.+ ...+++.++++.++.+++++.+..++||.++ +.+.++|+|..+|++...
T Consensus 188 ~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~----~~D~IiGiv~~kDll~~~ 246 (413)
T PRK11573 188 TVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRD----SLDDAISMLRVREAYRLM 246 (413)
T ss_pred ChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcC----CCCceEEEEEHHHHHHHh
Confidence 35566653 5578999999999999999999999999975 246799999999998643
No 230
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=88.23 E-value=0.81 Score=52.22 Aligned_cols=61 Identities=13% Similarity=0.154 Sum_probs=50.9
Q ss_pred CccccccC--CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHhhhh
Q 003966 706 DLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTA 770 (783)
Q Consensus 706 dl~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~~~~ 770 (783)
.++++|.+ ....++.+.+..++.+.+++.+..++||.++ +.+.++|+++.||++.+...+.
T Consensus 207 ~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~----~~D~iiGiv~~Kdll~~~~~~~ 269 (429)
T COG1253 207 TVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDG----DLDNIIGIVHVKDLLRALLDGQ 269 (429)
T ss_pred EeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcC----CCCcEEEEEEHHHHHHHHhcCc
Confidence 45667764 4467888999999999999999999999984 2577999999999999877653
No 231
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=87.37 E-value=0.63 Score=47.47 Aligned_cols=61 Identities=16% Similarity=0.178 Sum_probs=50.3
Q ss_pred ccccccC--CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHhhhhC
Q 003966 707 LHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAF 771 (783)
Q Consensus 707 l~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~~~~~ 771 (783)
++++|-+ .-.+++.+.++.+....+.+....+.||+.+ +++.+.||+--|||++++.....
T Consensus 69 vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~e----dkD~v~GIL~AKDLL~~~~~~~~ 131 (293)
T COG4535 69 VRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE----DKDHVEGILLAKDLLPFMRSDAE 131 (293)
T ss_pred HhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccC----CchhhhhhhhHHHHHHHhcCCcc
Confidence 4566653 3367899999999999999999999999975 36789999999999997665544
No 232
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=81.61 E-value=0.89 Score=53.47 Aligned_cols=67 Identities=13% Similarity=0.123 Sum_probs=57.0
Q ss_pred ccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHhhhhCCc
Q 003966 704 YIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPH 773 (783)
Q Consensus 704 ~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~~~~~~~ 773 (783)
.+.+.++|.++...+..+++..|..+......+|.+|+||+ ++.--++|.|.|+.|.....+++-|+
T Consensus 587 ~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s---~esmiLlGSV~R~~L~~ll~~~ig~~ 653 (931)
T KOG0476|consen 587 TVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVES---KESMILLGSVARRYLTALLQRHIGPE 653 (931)
T ss_pred EEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccC---cccceeeehhHHHHHHHHHHhhcCcc
Confidence 45678999999999999999999999998888999999987 45567999999999988766655444
No 233
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=80.40 E-value=3 Score=46.75 Aligned_cols=55 Identities=13% Similarity=0.174 Sum_probs=44.2
Q ss_pred ccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003966 590 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 660 (783)
Q Consensus 590 ~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~ 660 (783)
++.+ +.+ +..++++++++.+++....++++ .+||+|+ ++++|+|++.+++..|..
T Consensus 327 ~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~------------~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 327 EVES-LEA--APTVINPDTLMRDVLAARHRTGG-AILLVEN------------GRIVGVIGDDNIYHALLG 381 (382)
T ss_pred chhh-hcc--cCcccCCCCcHHHHHHHHhcCCC-CeEEeeC------------CeEEEEEeHHHHHHHHhc
Confidence 3444 455 67789999999999998888765 4888875 899999999999887653
No 234
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=72.20 E-value=5.4 Score=41.80 Aligned_cols=43 Identities=28% Similarity=0.264 Sum_probs=36.4
Q ss_pred ecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhh
Q 003966 718 VIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 765 (783)
Q Consensus 718 V~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~ 765 (783)
+.......+++..|...+...+||+|+ +|+++|.||+.|++.+
T Consensus 266 ~~~~~~~~~~ls~~~~~~~~~~~Vvd~-----~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 266 LLEGFVDRDALSDFLARGRSVLPVVDE-----DGRPLGTVTRADLLDE 308 (309)
T ss_pred cccchhhHHHHHHHHhcCCceeEEECC-----CCcEeeEEEHHHHhhh
Confidence 344555666888899999999999998 8999999999999864
No 235
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=67.88 E-value=9.3 Score=41.29 Aligned_cols=53 Identities=26% Similarity=0.369 Sum_probs=44.0
Q ss_pred ccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003966 594 LIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 660 (783)
Q Consensus 594 vM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~ 660 (783)
.+.+ ++.++..++++.+++....+.+ ..+||+|++ ++++|+|++.+++.+|..
T Consensus 332 ~~~~--~~~~v~~d~~~~~~~~~~~~~~-~p~aVvde~-----------~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 332 ALID--DVLTVDADTPLSEILARIRQAP-CPVAVVDED-----------GRYVGIISRGELLEALAR 384 (386)
T ss_pred cccc--cccccCccchHHHHHHHHhcCC-CceeEEcCC-----------CcEEEEecHHHHHHHHhc
Confidence 4555 7888999999999998887654 468999987 999999999999987753
No 236
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=63.77 E-value=4.5 Score=26.81 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.4
Q ss_pred hhhhHHHhhhhhhhhhhccCccc
Q 003966 242 DRRDLITCGSSSGVCAAFRAPVG 264 (783)
Q Consensus 242 ~~r~lv~~GaAAGvaaaF~APig 264 (783)
.||+|+..+++++.++++.++.+
T Consensus 3 sRR~fLk~~~a~~a~~~~~~~~~ 25 (26)
T PF10518_consen 3 SRRQFLKGGAAAAAAAALGGCAG 25 (26)
T ss_pred cHHHHHHHHHHHHHHHHhccccC
Confidence 59999999999999999988764
No 237
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=60.75 E-value=4.1e+02 Score=32.91 Aligned_cols=83 Identities=20% Similarity=0.268 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhhccCCcchHHHHHHHhhhhhhhhhchh----------HHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Q 003966 488 MGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMT----------VSLCVIFLELTNNLLLLPITMIVLLIAKTV 557 (783)
Q Consensus 488 iGa~~G~l~g~~~~~~~~~~~~~~alvGaaa~l~g~~r~p----------is~~vi~~ElTg~~~~l~pimia~~ia~~v 557 (783)
+||+.|...|.++.-.....+....+.|.+++++|.+|-. ++..++.+=..++..+.. .+.-+++|..+
T Consensus 197 ~Gaa~Gv~~Gli~~l~~~~~~~~~~~~af~GLlaG~fk~~gK~g~~~g~~l~~~il~~y~~~~~~~~~-~~~e~~ia~~l 275 (764)
T TIGR02865 197 AGAAGGVVIGVILGLANNANLYQIGVFGFAGLLGGIFKELGKIGTGIGYLVGFLILAFYTQGSVAFSL-ALYEALIATLL 275 (764)
T ss_pred HhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhhccCCcceeeHHHHHHHHHHHHHhccchhHHH-HHHHHHHHHHH
Confidence 5788888888877654455566667777888889988743 233333332223333322 23345555555
Q ss_pred HhhcCccHHHHHHH
Q 003966 558 GDSFNPSIYEIILE 571 (783)
Q Consensus 558 ~~~~~~~iy~~~l~ 571 (783)
--.++..+|+..-+
T Consensus 276 Fll~P~~~~~~~~~ 289 (764)
T TIGR02865 276 FLLIPNKIYKKLER 289 (764)
T ss_pred HHHhhHHHHHHHHh
Confidence 44447777776554
No 238
>PRK02509 hypothetical protein; Provisional
Probab=45.41 E-value=5.6e+02 Score=32.34 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=16.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHH
Q 003966 331 MDIIPVTLIGIIGGILGGLYN 351 (783)
Q Consensus 331 ~~l~~~i~lGv~~Gllg~~f~ 351 (783)
..+|...++.+++.+++.+|.
T Consensus 325 a~LP~~~iL~~ia~l~A~~~~ 345 (973)
T PRK02509 325 VQLPVYTILSILAGIIAFWLL 345 (973)
T ss_pred eHHHHHHHHHHHHHHHHHHHH
Confidence 347777788888888887775
No 239
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=44.82 E-value=30 Score=36.45 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHH
Q 003966 610 VSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 656 (783)
Q Consensus 610 v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~ 656 (783)
-.+++..+...+...+||+|++ ++++|.|++++++.
T Consensus 272 ~~~~ls~~~~~~~~~~~Vvd~~-----------g~~~G~vt~~~l~~ 307 (309)
T COG1125 272 DRDALSDFLARGRSVLPVVDED-----------GRPLGTVTRADLLD 307 (309)
T ss_pred hHHHHHHHHhcCCceeEEECCC-----------CcEeeEEEHHHHhh
Confidence 3345555555667789999997 99999999999864
No 240
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=43.46 E-value=31 Score=32.09 Aligned_cols=17 Identities=24% Similarity=0.616 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHH
Q 003966 334 IPVTLIGIIGGILGGLY 350 (783)
Q Consensus 334 ~~~i~lGv~~Gllg~~f 350 (783)
+..|++|+++|++|.++
T Consensus 66 i~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHH
Confidence 46788999999999775
No 241
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=36.82 E-value=18 Score=26.79 Aligned_cols=21 Identities=33% Similarity=0.412 Sum_probs=12.0
Q ss_pred CcchhhhHH--Hhhhhhhhhhhc
Q 003966 239 NDRDRRDLI--TCGSSSGVCAAF 259 (783)
Q Consensus 239 ~~~~~r~lv--~~GaAAGvaaaF 259 (783)
.+..||+|+ +.++.++++++.
T Consensus 7 ~~~~RRdFL~~at~~~gavG~~~ 29 (41)
T PF10399_consen 7 VDPTRRDFLTIATSAVGAVGAAA 29 (41)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHH
Confidence 456788876 666666666543
No 242
>PRK14216 camphor resistance protein CrcB; Provisional
Probab=34.09 E-value=49 Score=31.24 Aligned_cols=51 Identities=22% Similarity=0.229 Sum_probs=28.0
Q ss_pred hhhhHHHhhhhhhhhhhccCcccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHHH
Q 003966 242 DRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAF 299 (783)
Q Consensus 242 ~~r~lv~~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~~ 299 (783)
+.++++..+.+++++|..|-=++..+ ..+....-|.++..-+++++++..+
T Consensus 5 ~~~~~l~V~iGG~lGa~~Ry~l~~~~-------~~~~~~fP~gTl~vNv~GsfllG~~ 55 (132)
T PRK14216 5 DYRELAAVFAGGALGTLARAALSELA-------APDPARWPWPTFTVNVVGAFLLGYF 55 (132)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH-------hccCCCCcHHHHHHHHHHHHHHHHH
Confidence 34566677777777887775433221 1111122355666666777666544
No 243
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=31.93 E-value=69 Score=35.47 Aligned_cols=58 Identities=12% Similarity=0.149 Sum_probs=44.3
Q ss_pred cccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHH
Q 003966 591 VGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALK 659 (783)
Q Consensus 591 v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~ 659 (783)
-.|+++-..++..+++.+++.+-+..+++.+.+---|||+- |.+.|+|+..|++.-+-
T Consensus 267 k~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEY-----------G~i~GLVTLEDIlEEIV 324 (423)
T COG4536 267 KEDILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEY-----------GDIQGLVTLEDILEEIV 324 (423)
T ss_pred HhHHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEecc-----------CcEEeeeeHHHHHHHHh
Confidence 33444322356789999999999999887776666788876 99999999999976443
No 244
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=31.36 E-value=2.7e+02 Score=22.48 Aligned_cols=8 Identities=25% Similarity=0.588 Sum_probs=3.6
Q ss_pred cccccchh
Q 003966 61 YEINENDL 68 (783)
Q Consensus 61 y~~~~~~~ 68 (783)
|.+.||+.
T Consensus 3 YSESDnET 10 (60)
T PF06072_consen 3 YSESDNET 10 (60)
T ss_pred cCcccccc
Confidence 44444543
No 245
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.06 E-value=3.9e+02 Score=31.35 Aligned_cols=71 Identities=13% Similarity=0.235 Sum_probs=39.1
Q ss_pred hhhhccCcccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCcceeeeecCCcccccchhhh
Q 003966 255 VCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDII 334 (783)
Q Consensus 255 vaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~~~~~~~~~~~~~fg~~~~~~f~~~~~~~~~~~~~l~ 334 (783)
-+=.||.|=-+.|+++=+... . ..|+.+ +.+++.+.+ |..... ..-..-...+.
T Consensus 317 hGDVFR~P~~~~lLsv~vGsG---v----Q~l~M~-~vti~fA~l---------GflSPs---------~RGsLmT~~~~ 370 (628)
T KOG1278|consen 317 HGDVFRPPRNSMLLSVLVGSG---V----QLLGMI-LVTIFFACL---------GFLSPS---------SRGSLMTAMVL 370 (628)
T ss_pred ecccccCCCCCeEEEEEeccC---h----hhhHHH-HHHHHHHHh---------ccCCcc---------ccccHHHHHHH
Confidence 345788888888888777654 1 223333 333333332 122111 01122234577
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003966 335 PVTLIGIIGGILGGLYN 351 (783)
Q Consensus 335 ~~i~lGv~~Gllg~~f~ 351 (783)
+++++|+++|-.++-.-
T Consensus 371 l~v~~G~~agY~s~rly 387 (628)
T KOG1278|consen 371 LFVFMGFVAGYVSARLY 387 (628)
T ss_pred HHHHHHHhhhhhhhhhH
Confidence 88899999988876543
No 246
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=29.21 E-value=5.2e+02 Score=24.75 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003966 87 LKWSLACLVGLLTGLIATLINLAVE 111 (783)
Q Consensus 87 ~~w~~~~liGv~~Glva~~~~~~i~ 111 (783)
.-|++..++|++...+........+
T Consensus 8 GGWL~lp~iglils~l~~~~~l~~~ 32 (149)
T PF10754_consen 8 GGWLILPAIGLILSPLSTSLMLYLY 32 (149)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999988887776544
No 247
>PF04550 Phage_holin_2: Phage holin family 2 ; InterPro: IPR007633 This entry represents the Bacteriophage P2, GpY, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=28.24 E-value=2.4e+02 Score=24.67 Aligned_cols=52 Identities=21% Similarity=0.369 Sum_probs=31.9
Q ss_pred HHHhhcCccccccchHHHHHHHHHHHHHHHHhhccCCcchHHHHHHHhhhhhhh
Q 003966 469 GLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAG 522 (783)
Q Consensus 469 t~~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~alvGaaa~l~g 522 (783)
-.++-+-.++-=+|+-=..+|+...-.-|..+-.+++++| .|++|.+|.++-
T Consensus 22 k~L~s~Epit~RL~iGR~ilGs~~S~~Aga~Li~~Pdl~p--lAv~GlgsalGI 73 (89)
T PF04550_consen 22 KVLASNEPITLRLFIGRVILGSAVSVVAGAALIQFPDLPP--LAVIGLGSALGI 73 (89)
T ss_pred HHHccCCCCchhHHhHHHHHhhHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHh
Confidence 3344444455555555566677777666666655566665 577777777753
No 248
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=25.81 E-value=2.3e+02 Score=29.32 Aligned_cols=19 Identities=32% Similarity=0.613 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003966 134 FLYFTGVNFLLTLVAAVLC 152 (783)
Q Consensus 134 ~~~~~~~~~~~~~~a~~l~ 152 (783)
|++|+.+++.++++++.++
T Consensus 52 ~~~~~i~gi~~g~l~am~v 70 (224)
T PF13829_consen 52 WWYWLIIGILLGLLAAMIV 70 (224)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556667777777766544
No 249
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=24.43 E-value=69 Score=36.94 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHhhhhCCcccc
Q 003966 722 MSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLER 776 (783)
Q Consensus 722 ~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~~~~~~~l~~ 776 (783)
..++.+.+...+.|-.-++|++ ++++.|+|..+|+++.-+++.+.++.+
T Consensus 413 ~~l~~~~~~vs~~GGTPL~V~~------~~~~~GVI~LkDivK~Gi~ERf~elR~ 461 (681)
T COG2216 413 EDLDAAVDEVSRLGGTPLVVVE------NGRILGVIYLKDIVKPGIKERFAELRK 461 (681)
T ss_pred HHHHHHHHHHHhcCCCceEEEE------CCEEEEEEEehhhcchhHHHHHHHHHh
Confidence 3588899999999999999997 689999999999999877777666554
No 250
>PF04165 DUF401: Protein of unknown function (DUF401) ; InterPro: IPR007294 Members of this family are predicted to have 10 transmembrane regions.
Probab=22.98 E-value=6.6e+02 Score=28.31 Aligned_cols=25 Identities=44% Similarity=0.616 Sum_probs=20.9
Q ss_pred HHHHHHhhhhhhhhhchhHHHHHHH
Q 003966 510 LYAVLGAASLMAGSMRMTVSLCVIF 534 (783)
Q Consensus 510 ~~alvGaaa~l~g~~r~pis~~vi~ 534 (783)
.|+++.+++.++|++=.|+=.|.++
T Consensus 327 ~~~~la~~~g~~GvmlSP~HlCLvl 351 (385)
T PF04165_consen 327 PYLVLAYASGFAGVMLSPVHLCLVL 351 (385)
T ss_pred hHHHHHHHHHHHHHhhchHHHHHHH
Confidence 5777888888889999999888776
No 251
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.20 E-value=2.9e+02 Score=25.11 Aligned_cols=46 Identities=24% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccccCCCcceeeeecCCcccccchhhhHHHHHHHHHHHHHHH
Q 003966 286 FFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGL 349 (783)
Q Consensus 286 f~~~~va~~v~~~~~~~~~~~~~~~fg~~~~~~f~~~~~~~~~~~~~l~~~i~lGv~~Gllg~~ 349 (783)
+.+-.|+.+++-.+++|..+ .++++.| |-++.++++|.++|++-++
T Consensus 48 lssefIsGilVGa~iG~llD---~~agTsP---------------wglIv~lllGf~AG~lnv~ 93 (116)
T COG5336 48 LSSEFISGILVGAGIGWLLD---KFAGTSP---------------WGLIVFLLLGFGAGVLNVL 93 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HhcCCCc---------------HHHHHHHHHHHHHHHHHHH
Done!