Query 003966
Match_columns 783
No_of_seqs 457 out of 2572
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 09:49:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003966.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003966hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3org_A CMCLC; transporter, tra 100.0 8.2E-89 2.8E-93 801.9 41.1 599 87-769 8-626 (632)
2 3nd0_A SLL0855 protein; CLC fa 100.0 1.5E-69 5.2E-74 612.0 39.9 435 59-572 3-443 (466)
3 1ots_A Voltage-gated CLC-type 100.0 5.1E-68 1.8E-72 601.7 44.0 413 87-573 34-452 (465)
4 4ene_A CLC-EC1, H(+)/CL(-) exc 100.0 3.2E-67 1.1E-71 591.7 44.8 410 88-572 19-436 (446)
5 2d4z_A Chloride channel protei 99.8 9.8E-21 3.4E-25 197.0 15.6 174 576-767 1-245 (250)
6 4esy_A CBS domain containing m 99.7 1.7E-18 5.8E-23 169.6 9.6 150 586-770 15-164 (170)
7 3i8n_A Uncharacterized protein 99.7 8.3E-17 2.8E-21 150.1 11.9 127 586-768 3-129 (130)
8 3hf7_A Uncharacterized CBS-dom 99.7 6.8E-17 2.3E-21 150.9 11.1 128 588-769 1-128 (130)
9 3lv9_A Putative transporter; C 99.7 2.6E-16 9E-21 150.0 14.5 128 585-769 19-146 (148)
10 3k6e_A CBS domain protein; str 99.7 1.2E-16 4.3E-21 154.4 12.1 131 589-771 15-145 (156)
11 3kpb_A Uncharacterized protein 99.7 3.2E-16 1.1E-20 143.9 12.3 120 589-768 1-120 (122)
12 3lhh_A CBS domain protein; str 99.7 5E-16 1.7E-20 152.3 14.5 130 586-772 39-168 (172)
13 3lfr_A Putative metal ION tran 99.7 1.4E-16 4.8E-21 149.9 9.3 130 588-772 2-131 (136)
14 2ef7_A Hypothetical protein ST 99.7 7.6E-16 2.6E-20 143.7 14.1 127 586-770 1-127 (133)
15 3jtf_A Magnesium and cobalt ef 99.7 1.9E-16 6.4E-21 147.6 9.8 126 587-770 3-128 (129)
16 3oco_A Hemolysin-like protein 99.6 3.3E-16 1.1E-20 150.4 10.5 131 586-773 17-148 (153)
17 3nqr_A Magnesium and cobalt ef 99.6 1.5E-16 5.2E-21 147.6 7.7 124 588-767 2-125 (127)
18 2rih_A Conserved protein with 99.6 1.3E-15 4.6E-20 143.8 14.2 122 588-767 4-127 (141)
19 3gby_A Uncharacterized protein 99.6 4.3E-16 1.5E-20 144.7 9.6 124 587-768 3-126 (128)
20 3fv6_A YQZB protein; CBS domai 99.6 1.5E-15 5.2E-20 146.7 13.8 131 585-772 13-148 (159)
21 3ocm_A Putative membrane prote 99.6 1E-15 3.5E-20 150.6 12.6 132 586-775 33-164 (173)
22 2p9m_A Hypothetical protein MJ 99.6 7.5E-16 2.6E-20 144.6 11.0 127 585-768 4-136 (138)
23 2yzi_A Hypothetical protein PH 99.6 1.6E-15 5.4E-20 142.5 13.2 128 586-771 4-132 (138)
24 3fhm_A Uncharacterized protein 99.6 2.6E-15 9E-20 146.0 13.4 138 580-771 15-153 (165)
25 3k2v_A Putative D-arabinose 5- 99.6 1E-15 3.4E-20 146.2 10.1 121 589-764 28-148 (149)
26 4gqw_A CBS domain-containing p 99.6 9.5E-16 3.3E-20 146.0 9.7 142 587-769 3-144 (152)
27 3lqn_A CBS domain protein; csg 99.6 1.8E-15 6.3E-20 144.3 11.0 137 584-771 10-146 (150)
28 3oi8_A Uncharacterized protein 99.6 7.6E-16 2.6E-20 148.5 7.9 122 586-764 35-156 (156)
29 1pbj_A Hypothetical protein; s 99.6 3.2E-15 1.1E-19 137.6 11.7 123 589-769 1-123 (125)
30 3sl7_A CBS domain-containing p 99.6 1.3E-15 4.3E-20 149.7 9.4 158 588-772 3-160 (180)
31 1o50_A CBS domain-containing p 99.6 5.6E-15 1.9E-19 142.3 12.9 141 585-770 12-155 (157)
32 3ctu_A CBS domain protein; str 99.6 4.9E-15 1.7E-19 142.4 12.0 134 586-771 12-145 (156)
33 2emq_A Hypothetical conserved 99.6 6.5E-15 2.2E-19 141.4 12.4 137 585-772 7-143 (157)
34 2o16_A Acetoin utilization pro 99.6 4E-15 1.4E-19 144.0 10.4 133 587-768 3-135 (160)
35 2rc3_A CBS domain; in SITU pro 99.6 9.1E-15 3.1E-19 136.8 12.4 124 589-769 6-132 (135)
36 2nyc_A Nuclear protein SNF4; b 99.6 8.6E-15 3E-19 138.1 12.0 129 585-768 4-141 (144)
37 2j9l_A Chloride channel protei 99.6 9.5E-15 3.2E-19 144.2 12.8 158 584-772 6-169 (185)
38 3kxr_A Magnesium transporter, 99.6 8.9E-15 3E-19 147.9 12.4 127 587-775 52-181 (205)
39 1y5h_A Hypothetical protein RV 99.6 3.2E-15 1.1E-19 139.5 8.4 126 586-768 5-131 (133)
40 2pfi_A Chloride channel protei 99.6 1.3E-14 4.3E-19 140.3 12.8 135 586-771 10-150 (164)
41 2uv4_A 5'-AMP-activated protei 99.6 1.1E-14 3.9E-19 139.4 12.3 128 583-767 17-150 (152)
42 1pvm_A Conserved hypothetical 99.6 1.8E-14 6.2E-19 142.7 13.4 126 588-768 8-133 (184)
43 1yav_A Hypothetical protein BS 99.5 8.1E-15 2.8E-19 141.4 9.3 135 586-772 11-146 (159)
44 4fry_A Putative signal-transdu 99.5 2E-14 6.9E-19 138.2 11.0 129 589-772 7-139 (157)
45 3l2b_A Probable manganase-depe 99.5 4.4E-14 1.5E-18 146.5 12.9 162 588-767 6-243 (245)
46 3pc3_A CG1753, isoform A; CBS, 99.5 7.7E-14 2.6E-18 160.9 12.9 155 562-770 357-513 (527)
47 1vr9_A CBS domain protein/ACT 99.5 8.8E-14 3E-18 141.3 10.7 119 588-768 12-130 (213)
48 3ddj_A CBS domain-containing p 99.5 8.2E-14 2.8E-18 148.3 10.9 134 588-771 155-288 (296)
49 2oux_A Magnesium transporter; 99.5 8.9E-14 3.1E-18 147.9 9.9 125 587-773 135-264 (286)
50 2yvy_A MGTE, Mg2+ transporter 99.5 2.2E-13 7.5E-18 144.2 12.3 127 587-775 133-264 (278)
51 3t4n_C Nuclear protein SNF4; C 99.4 2.8E-13 9.7E-18 146.0 12.6 128 587-769 185-321 (323)
52 3kh5_A Protein MJ1225; AMPK, A 99.4 4.6E-13 1.6E-17 140.7 12.2 133 588-766 147-279 (280)
53 2yzq_A Putative uncharacterize 99.4 2.8E-13 9.6E-18 142.8 10.4 150 587-768 124-279 (282)
54 3kh5_A Protein MJ1225; AMPK, A 99.4 2.4E-12 8.2E-17 135.2 13.9 122 588-767 83-204 (280)
55 3ddj_A CBS domain-containing p 99.4 9.6E-13 3.3E-17 140.0 10.5 122 588-767 92-213 (296)
56 2zy9_A Mg2+ transporter MGTE; 99.4 1.7E-12 5.8E-17 147.4 11.8 121 587-769 153-278 (473)
57 2qrd_G Protein C1556.08C; AMPK 99.4 2.8E-12 9.5E-17 138.8 12.9 128 588-770 181-317 (334)
58 2yzq_A Putative uncharacterize 99.3 1.4E-12 4.8E-17 137.4 7.4 117 589-767 1-118 (282)
59 2v8q_E 5'-AMP-activated protei 99.3 1.4E-11 4.7E-16 133.2 13.9 146 586-768 32-177 (330)
60 3usb_A Inosine-5'-monophosphat 99.3 1.4E-11 5E-16 140.6 12.3 119 589-768 113-234 (511)
61 4fxs_A Inosine-5'-monophosphat 99.2 3.6E-12 1.2E-16 145.1 6.5 117 589-766 89-207 (496)
62 2qrd_G Protein C1556.08C; AMPK 99.2 3.3E-11 1.1E-15 130.3 12.9 146 586-768 19-172 (334)
63 3t4n_C Nuclear protein SNF4; C 99.2 4.2E-11 1.4E-15 128.9 12.3 132 590-769 115-249 (323)
64 2v8q_E 5'-AMP-activated protei 99.2 5.9E-11 2E-15 128.2 13.0 130 590-769 119-252 (330)
65 1zfj_A Inosine monophosphate d 99.2 4E-11 1.4E-15 137.1 11.7 117 590-767 91-210 (491)
66 4avf_A Inosine-5'-monophosphat 99.1 5.6E-12 1.9E-16 143.4 1.1 116 589-766 88-205 (490)
67 4af0_A Inosine-5'-monophosphat 99.1 5.9E-12 2E-16 140.2 1.0 121 592-774 141-261 (556)
68 4ene_A CLC-EC1, H(+)/CL(-) exc 99.1 4E-10 1.4E-14 126.7 15.7 185 91-298 239-423 (446)
69 1vrd_A Inosine-5'-monophosphat 99.1 5.4E-12 1.9E-16 144.4 0.3 119 589-768 95-215 (494)
70 1ots_A Voltage-gated CLC-type 99.1 5E-10 1.7E-14 126.6 15.9 185 90-297 253-437 (465)
71 1me8_A Inosine-5'-monophosphat 99.1 7.3E-12 2.5E-16 143.2 -0.7 126 587-769 94-222 (503)
72 3nd0_A SLL0855 protein; CLC fa 99.1 8.4E-10 2.9E-14 124.5 14.0 181 91-297 249-429 (466)
73 1jcn_A Inosine monophosphate d 99.0 8E-12 2.7E-16 143.6 -3.0 177 530-767 48-232 (514)
74 3org_A CMCLC; transporter, tra 99.0 6.6E-09 2.3E-13 122.1 18.9 194 327-561 5-211 (632)
75 2cu0_A Inosine-5'-monophosphat 98.9 1.2E-10 4E-15 132.8 -0.0 114 590-767 94-207 (486)
76 3ghd_A A cystathionine beta-sy 98.4 6E-07 2.1E-11 73.9 7.3 45 601-657 2-46 (70)
77 4esy_A CBS domain containing m 98.4 5.2E-07 1.8E-11 87.4 7.4 57 705-766 18-74 (170)
78 1vr9_A CBS domain protein/ACT 98.3 9.4E-07 3.2E-11 89.2 7.2 102 588-744 71-172 (213)
79 3ghd_A A cystathionine beta-sy 98.3 1.3E-06 4.4E-11 71.9 6.5 48 715-768 2-49 (70)
80 3fio_A A cystathionine beta-sy 98.1 5.8E-06 2E-10 67.2 7.3 48 600-659 1-48 (70)
81 3l2b_A Probable manganase-depe 98.1 3.6E-06 1.2E-10 86.6 7.0 60 705-769 7-66 (245)
82 3lhh_A CBS domain protein; str 98.1 3.6E-06 1.2E-10 81.7 6.1 59 705-768 42-103 (172)
83 2d4z_A Chloride channel protei 98.1 4.8E-06 1.6E-10 86.2 7.4 62 705-769 13-74 (250)
84 3lv9_A Putative transporter; C 98.0 5.9E-06 2E-10 77.8 7.1 60 705-769 23-85 (148)
85 2rih_A Conserved protein with 98.0 5.9E-06 2E-10 77.0 6.9 60 704-768 4-65 (141)
86 3fio_A A cystathionine beta-sy 98.0 6.4E-06 2.2E-10 67.0 6.1 48 715-768 2-49 (70)
87 2o16_A Acetoin utilization pro 98.0 5.1E-06 1.7E-10 79.5 6.3 60 704-768 4-63 (160)
88 3k2v_A Putative D-arabinose 5- 98.0 6.8E-06 2.3E-10 77.5 6.5 59 705-768 28-88 (149)
89 3oi8_A Uncharacterized protein 98.0 1.2E-05 4E-10 76.7 7.9 58 705-767 38-98 (156)
90 3kpb_A Uncharacterized protein 98.0 5.3E-06 1.8E-10 75.0 5.3 57 707-768 3-59 (122)
91 2yzi_A Hypothetical protein PH 98.0 9.2E-06 3.2E-10 75.2 7.0 56 705-765 7-62 (138)
92 3nqr_A Magnesium and cobalt ef 98.0 6.3E-06 2.1E-10 75.5 5.5 57 706-767 4-63 (127)
93 3jtf_A Magnesium and cobalt ef 98.0 7.9E-06 2.7E-10 75.1 6.0 58 705-767 5-65 (129)
94 2p9m_A Hypothetical protein MJ 97.9 1.2E-05 4.2E-10 74.3 6.9 57 705-766 8-65 (138)
95 3gby_A Uncharacterized protein 97.9 1E-05 3.5E-10 74.1 5.7 57 705-767 5-61 (128)
96 3lfr_A Putative metal ION tran 97.9 1E-05 3.5E-10 75.1 5.8 57 706-767 4-63 (136)
97 3fv6_A YQZB protein; CBS domai 97.9 1.5E-05 5.1E-10 76.0 6.7 57 705-767 17-73 (159)
98 3lqn_A CBS domain protein; csg 97.9 9.9E-06 3.4E-10 76.3 4.8 58 705-767 15-74 (150)
99 1pbj_A Hypothetical protein; s 97.8 1.8E-05 6.3E-10 71.7 6.0 56 706-767 2-57 (125)
100 4gqw_A CBS domain-containing p 97.8 1.7E-05 6E-10 74.3 5.9 56 705-765 5-62 (152)
101 3ctu_A CBS domain protein; str 97.8 1.6E-05 5.6E-10 75.3 5.6 58 706-768 16-75 (156)
102 3i8n_A Uncharacterized protein 97.8 1.1E-05 3.9E-10 74.1 4.2 59 705-768 6-67 (130)
103 1y5h_A Hypothetical protein RV 97.8 1.3E-05 4.6E-10 73.6 4.6 55 705-764 8-62 (133)
104 1yav_A Hypothetical protein BS 97.8 1.5E-05 5.1E-10 75.9 5.1 58 705-767 14-73 (159)
105 2emq_A Hypothetical conserved 97.8 1.9E-05 6.7E-10 74.7 5.9 58 705-767 11-70 (157)
106 3hf7_A Uncharacterized CBS-dom 97.8 1.5E-05 5E-10 73.5 4.8 59 706-768 3-63 (130)
107 3fhm_A Uncharacterized protein 97.8 1.5E-05 5.1E-10 76.6 5.1 60 704-768 23-85 (165)
108 1pvm_A Conserved hypothetical 97.8 2.7E-05 9.1E-10 76.3 6.9 58 705-767 9-66 (184)
109 3k6e_A CBS domain protein; str 97.8 1.9E-05 6.6E-10 75.4 5.7 57 707-768 17-75 (156)
110 2ef7_A Hypothetical protein ST 97.8 3.6E-05 1.2E-09 70.6 7.1 58 705-768 4-61 (133)
111 2nyc_A Nuclear protein SNF4; b 97.7 4.2E-05 1.4E-09 71.0 7.2 54 710-768 16-69 (144)
112 2j9l_A Chloride channel protei 97.7 2.1E-05 7.1E-10 76.7 5.1 60 704-768 10-77 (185)
113 2pfi_A Chloride channel protei 97.7 2.6E-05 8.9E-10 74.3 5.5 60 705-767 13-72 (164)
114 1o50_A CBS domain-containing p 97.7 3E-05 1E-09 73.7 5.6 57 705-767 16-73 (157)
115 3ocm_A Putative membrane prote 97.7 4.8E-05 1.6E-09 74.0 6.8 59 705-768 36-97 (173)
116 3sl7_A CBS domain-containing p 97.6 6.2E-05 2.1E-09 72.8 6.4 61 587-660 96-156 (180)
117 2rc3_A CBS domain; in SITU pro 97.6 7.8E-05 2.7E-09 68.6 6.7 60 587-660 72-131 (135)
118 3kxr_A Magnesium transporter, 97.6 9.3E-05 3.2E-09 74.1 7.6 60 588-660 115-174 (205)
119 2uv4_A 5'-AMP-activated protei 97.6 7.3E-05 2.5E-09 70.6 6.4 56 706-768 24-79 (152)
120 3oco_A Hemolysin-like protein 97.6 0.00012 4E-09 69.3 7.5 59 588-660 85-143 (153)
121 3pc3_A CG1753, isoform A; CBS, 97.5 8.7E-05 3E-09 85.2 6.5 61 704-769 383-445 (527)
122 4fry_A Putative signal-transdu 97.4 0.00013 4.5E-09 69.0 6.0 60 587-660 76-135 (157)
123 2yvy_A MGTE, Mg2+ transporter 97.1 0.00039 1.3E-08 72.8 6.0 60 588-660 198-257 (278)
124 2oux_A Magnesium transporter; 97.1 0.00046 1.6E-08 72.7 6.1 60 588-660 200-259 (286)
125 1me8_A Inosine-5'-monophosphat 97.0 0.00019 6.4E-09 81.9 2.0 62 587-659 159-220 (503)
126 2zy9_A Mg2+ transporter MGTE; 97.0 0.00091 3.1E-08 75.6 7.1 60 588-660 218-277 (473)
127 4fxs_A Inosine-5'-monophosphat 96.8 0.00076 2.6E-08 76.5 4.8 53 706-763 90-142 (496)
128 3usb_A Inosine-5'-monophosphat 96.7 0.0045 1.5E-07 70.5 10.2 62 587-660 173-234 (511)
129 1zfj_A Inosine monophosphate d 96.5 0.0021 7.1E-08 73.0 5.9 54 706-764 91-146 (491)
130 1vrd_A Inosine-5'-monophosphat 96.4 0.00058 2E-08 77.7 0.4 55 705-764 95-149 (494)
131 4af0_A Inosine-5'-monophosphat 95.8 0.0016 5.6E-08 72.8 0.0 58 588-658 199-256 (556)
132 1jcn_A Inosine monophosphate d 95.7 0.0021 7.3E-08 73.4 0.5 57 706-764 109-165 (514)
133 4avf_A Inosine-5'-monophosphat 95.6 0.002 6.9E-08 73.0 0.1 52 706-763 89-140 (490)
134 2cu0_A Inosine-5'-monophosphat 95.5 0.0024 8.4E-08 72.3 0.1 58 588-658 149-206 (486)
135 2pq4_B Periplasmic nitrate red 34.8 15 0.00052 25.2 1.4 25 242-266 4-28 (35)
136 2l2t_A Receptor tyrosine-prote 23.8 46 0.0016 24.1 2.3 21 336-356 11-31 (44)
No 1
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=100.00 E-value=8.2e-89 Score=801.94 Aligned_cols=599 Identities=24% Similarity=0.385 Sum_probs=453.6
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHH
Q 003966 87 LKWS-LACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIP 165 (783)
Q Consensus 87 ~~w~-~~~liGv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGip 165 (783)
.||+ +++++|+++|+++++++..++++++++.+... .... ...|+.|+.+++++++++++++.+++|.++|||||
T Consensus 8 ~r~~~~~~lvGi~~gl~~~~~~~~i~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp 83 (632)
T 3org_A 8 LRLVCFLTLLGVTAALFIFAVDLAVHGLEELRMKISR-LAGR---FAGYILYVVSGVALCLLSTFWCAVLSTEAEGSGLP 83 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HSCH---HHHHHHHHHHHHHHHHHHHHHHHHSCGGGCBCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhh---hHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHH
Confidence 3555 88999999999999999999999987654322 2211 34577788889999999999999999999999999
Q ss_pred HHHHHHhCCC--CCCcchhHHHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHhhcCCCCcccchhhhhh-ccCCcch
Q 003966 166 EIKAYLNGVD--TPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLR-YFNNDRD 242 (783)
Q Consensus 166 ev~~~lng~~--~~~~l~~~tl~~K~~~~~~sv~sG~s~G~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~-~f~~~~~ 242 (783)
|||++++|.. .++.+++|++++|++++++++++|+|+|||||+||+||++|+.+++. ++++ +++|+++
T Consensus 84 ~v~~~l~g~~~~~~~~~~~~~~~~K~~~~~l~igsG~s~GrEGP~vqiGa~ig~~~~~~---------~~f~~~~~~~~~ 154 (632)
T 3org_A 84 QMKSILSGFYDKMRSALELRVLFAKALGLICAIGGGLPVGWEGPNVHIACIIAHQFYRL---------GVFKELCTDRAL 154 (632)
T ss_dssp HHHHHTTTTHHHHGGGGSHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHTTS---------HHHHHHHHSHHH
T ss_pred HHHHHHhCccccccccccHHHHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHHHhhh---------hhhccccCCHHH
Confidence 9999999976 67789999999999999999999999999999999999999988751 1232 2347889
Q ss_pred hhhHHHhhhhhhhhhhccCcccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCcceeeeec
Q 003966 243 RRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVS 322 (783)
Q Consensus 243 ~r~lv~~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~~~~~~~~~~~~~fg~~~~~~f~~~ 322 (783)
||++++||+|||+||+|||||||++|++||+.++|+.+.+|+++++|++++++++.+... ...+.+|+. .|++
T Consensus 155 ~r~ll~aGaaAG~aaaF~aPlaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~~~--~~~~~~~~~----~~~~- 227 (632)
T 3org_A 155 RLQTLAAACAVGLASSFGAPLGGVLYSIETIASFYLVQAFWKGVLSALSGAIVYELLYTT--PLVEAFEGT----NFDA- 227 (632)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTCSEEETTHHHHHHHHHHHHHHHTTC------------------------
T ss_pred HHHHHHHHHHHHHHHHhCCccHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccC--ccccccccc----cccc-
Confidence 999999999999999999999999999999999999999999999999999887754210 000012211 1222
Q ss_pred CCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHhhhhccccccccCCCCCC
Q 003966 323 NVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPS 402 (783)
Q Consensus 323 ~~~~~~~~~~l~~~i~lGv~~Gllg~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~ 402 (783)
..++++.++ +++++|+++|++|.+|+++++++.+++ ++++.+.++++++++++++++++. +|..
T Consensus 228 --~~~~~~~~l-~~~~lGi~~Gl~g~~f~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~--~p~~--------- 291 (632)
T 3org_A 228 --SDVSRTQTL-LYAILGALMGVLGALFIRCVRSIYELR--MRHYPGTNRYFLVGVVALFASALQ--YPFR--------- 291 (632)
T ss_dssp ---CCCCSCTH-HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHSSTTCCTHHHHHHHHHHHHHHT--TTC----------
T ss_pred --cCCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcchhHHHHHHHHHHHHHHHH--HHHH---------
Confidence 235778899 999999999999999999999887652 222223456778887777766432 2322
Q ss_pred CCCCCCCCCCCCCcccccCCCCCchhhHHHhhcCcHHHHHHhhcCCCC---CCCchhHHHHHHHHHHHHHHHhhcCcccc
Q 003966 403 FPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTP---TEFQPSSILIFFILYCILGLITFGIAVPS 479 (783)
Q Consensus 403 ~~~~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~---~~~~~~~l~~~~~~k~~lt~~t~g~g~~g 479 (783)
.| .+ ++++.++.+|+..+. +++.+..+++++++|+++|++|+|+|+||
T Consensus 292 -------~g-------------~~---------~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~s~g~g~pG 342 (632)
T 3org_A 292 -------LF-------------AL---------DPRATINDLFKAVPLYQTDHFGWTELILMPIIKFILVALSIGLPLPA 342 (632)
T ss_dssp ----------------------------------CHHHHHHHHSCC----------CCSSHHHHHHHHHHHHHTTSSSBC
T ss_pred -------hc-------------CC---------cHHHHHHHHHcCCccccccchhHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 11 11 223455666654221 23445567788899999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHhhcc-C-CcchHHHHHHHhhhhhhhhhchhHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Q 003966 480 GLFLPIILMGSAYGRLLGMAMGSY-T-NIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTV 557 (783)
Q Consensus 480 G~f~P~l~iGa~~G~l~g~~~~~~-~-~~~~~~~alvGaaa~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~ia~~v 557 (783)
|+|+|++++||++|+++|.+++.. + .++|+.||++||||+++|++|+|+++ +|++|+||++++++|+|+++++||+|
T Consensus 343 Gif~P~l~iGA~~G~~~g~~~~~~~p~~~~p~~~a~vGmaa~~~~v~~ap~t~-vi~~E~tg~~~~~lpl~ia~~~a~~v 421 (632)
T 3org_A 343 GVFVPSFLIGAGFGRLYGELMRVVFGNAIVPGSYAVVGAAAFTAGVTRALSCA-VIIFEVTGQIRHLVPVLISVLLAVIV 421 (632)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSCCTTHH-HHHHHHTCCCSCSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCChhHHHHHHHHHHHHHHH
Confidence 999999999999999999987652 2 37899999999999999999998886 58999999999999999999999999
Q ss_pred HhhcCccHHHHHHHhcCCCCCCCCCCCcccccccccccccCCCeeEEcCcccHHHHHHHHh-cCCCCeeeeecCCCCCCC
Q 003966 558 GDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLR-NTTHNGFPVLDEGVVPPS 636 (783)
Q Consensus 558 ~~~~~~~iy~~~l~~kg~p~l~~~~~~~l~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~-~t~~~~fPVVd~~~~~~~ 636 (783)
++.+++++||.+++.|++|++++..++..++++|+|+|+++.++++++++++++|+.+.|+ +++|+++||+|++
T Consensus 422 ~~~~~~~iY~~~~~~k~lp~l~~~~~~~~~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~----- 496 (632)
T 3org_A 422 GNAFNRSLYETLVLMKHLPYMPILRRDRSPEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDAN----- 496 (632)
T ss_dssp HHHHCCCHHHHHHHHTTCCEEEEECTTCCTTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTT-----
T ss_pred HHHhCCCHHHHHHHhcCCCccccccccccccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecC-----
Confidence 9999889999999999999998766666689999999993339999999999999999999 8999999999986
Q ss_pred CCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhhhhHHHhhhcCCc-ccc----ccChhh-----hhhccC
Q 003966 637 GLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKI-EEV----AVTSEE-----MEMYID 706 (783)
Q Consensus 637 ~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~~~~d~~~~~~~i-~di----~~~~~~-----~~~~~d 706 (783)
++++|+|+++|+++.+.++.. +.+.+.+..+....+...++.+.-... ++. .....+ .+..-+
T Consensus 497 ------~~lvGiVt~~DL~~~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 569 (632)
T 3org_A 497 ------GYLLGAISRKEIVDRLQHVLE-DVPEPIAGHRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSS 569 (632)
T ss_dssp ------CBBCCEESHHHHTTTTTTC-------------------------------------------------------
T ss_pred ------CeEEEEEEHHHHHHHHHHHhh-hcccccccccceeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccc
Confidence 899999999999876654321 000000001111111122222111000 000 000000 011113
Q ss_pred ccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHhhh
Q 003966 707 LHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT 769 (783)
Q Consensus 707 l~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~~~ 769 (783)
++++|+++|++|++|+++.++.++|++++.+++||+ + +|+++||||++|+++.+.++
T Consensus 570 v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e-----~G~lvGIVT~~Dll~~~~~~ 626 (632)
T 3org_A 570 LVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT-E-----RGKLVGIVEREDVAYGYSNS 626 (632)
T ss_dssp -CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEE-E-----TTEEEEEEEGGGTEECCCC-
T ss_pred cchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEE-E-----CCEEEEEEehhhHHHHHhhh
Confidence 789999999999999999999999999999999999 5 78999999999999876554
No 2
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Probab=100.00 E-value=1.5e-69 Score=612.02 Aligned_cols=435 Identities=22% Similarity=0.370 Sum_probs=344.1
Q ss_pred CCcccccchhhhHhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH
Q 003966 59 LDYEINENDLFKHDWRSRSKVQVLQYIFLKWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFT 138 (783)
Q Consensus 59 ldy~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~liGv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (783)
.|||.. |+.+.++.+++.+.+..+..+..+++++++|+++|+++.+|+..+++++++++...... . ...+..|+.++
T Consensus 3 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~l~~~liGi~~Gl~~~~f~~~l~~~~~~~~~~~~~~-~-~~~~~~~~l~~ 79 (466)
T 3nd0_A 3 ADFETS-NRRWLDKLPRNLTDSARSLHPRTLVAAIVVGLITGVLGAGFKSAVNNMLQWRSQLAQIL-A-PIPPLAWLVTA 79 (466)
T ss_dssp ------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-T-TSCTHHHHHHH
T ss_pred ccHHHH-HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-c-cccHHHHHHHH
Confidence 699999 54443333222221111111234568999999999999999999999999998764331 1 22223355555
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhCCCCCCcchhHHHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHH
Q 003966 139 GVNFLLTLVAAVLCVCFAPTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASL 218 (783)
Q Consensus 139 ~~~~~~~~~a~~l~~~~~p~a~GsGipev~~~lng~~~~~~l~~~tl~~K~~~~~~sv~sG~s~G~EGP~vhiGa~igs~ 218 (783)
.++.++++++++++.+++|+++|||||||+++++|.+ +..++|+++.|++++++++++|+|+|||||++|+||++|++
T Consensus 80 ~~~~~~~~l~~~l~~~~~p~a~GsGIp~v~~~l~g~~--~~~~~~~~~~k~~~~~ltig~G~S~GrEGP~vqiGa~ig~~ 157 (466)
T 3nd0_A 80 LISGGMVALSFWLMKRFAPDTSGSGIPQIEGHLEGKL--PLVWQRVLPIKLVGGFLSLGAGMLAGFEGPTIQMGGSIGQM 157 (466)
T ss_dssp HHHHHHHHHHHHHHTTTCGGGSBCSHHHHHHHTTSSS--CCCHHHHHHHHHHHHHHHHHTTCSCCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCcCCCCHHHHHHHHcCCC--CCchHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHH
Confidence 5666677778888889999999999999999999853 44568999999999999999999999999999999999999
Q ss_pred hhcCCCCcccchhhhhhccCCcchhhhHHHhhhhhhhhhhccCcccceeeeeeecchhhh--hhhHHHHHHHHHHHHHHH
Q 003966 219 LGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWR--SALLWRTFFSTAVVVVVL 296 (783)
Q Consensus 219 l~~~~s~~~~l~~~~~~~f~~~~~~r~lv~~GaAAGvaaaF~APigGvLFalE~~~~~~~--~~~~~~~f~~~~va~~v~ 296 (783)
++| +++. +++|||++++||+|||+||+|||||+|++|++||+.++|+ ...++++++++.+++++.
T Consensus 158 l~~-----------~~~~--~~~~~r~ll~aGaAAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v~ 224 (466)
T 3nd0_A 158 TGG-----------WFKA--TQENQRILIAVGAGAGLATAFNAPLAGVALIGEEMHPRFRSQTLAYHSLLFGCVMATIIL 224 (466)
T ss_dssp HHH-----------HTTC--CHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHSSSCCCCSSCCTTHHHHHHHHHHHHHHH
T ss_pred HHH-----------HcCC--ChhHHHHHHHHHHHHHHHHHhCCchHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHH
Confidence 997 4443 6789999999999999999999999999999999998884 455779999999998888
Q ss_pred HHHHHHHhcCCccccCCCcceeeeecCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHH
Q 003966 297 RAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLA 376 (783)
Q Consensus 297 ~~~~~~~~~~~~~~fg~~~~~~f~~~~~~~~~~~~~l~~~i~lGv~~Gllg~~f~~l~~~~~~~~~~~~~~~~~~~~~~~ 376 (783)
+.+ +++.+ .|+++. ...++..++++++++|+++|++|.+|++++.++.+++++++ +..+++++
T Consensus 225 ~~~-----------~g~~~--~f~~~~-~~~~~~~~l~~~illGi~~Gl~g~lf~~~~~~~~~~~~~~~---~~~~~~~~ 287 (466)
T 3nd0_A 225 RMI-----------RGQSA--IISLTE-FKRVPLDSLWMFIILGILFGVMGYTFNRGLFKVLDWFDRLP---PLATKWKG 287 (466)
T ss_dssp HHH-----------TCSSC--SSCCTT-CCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---HHHHHHHH
T ss_pred HHH-----------cCCCC--ceecCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---cccHHHHH
Confidence 764 34443 455543 34567889999999999999999999999999888776542 23356777
Q ss_pred HHHHHHHHhhhhccccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCchhhHHHhhcCcHHHHHHhhcCCCCCCCchh
Q 003966 377 LSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPS 456 (783)
Q Consensus 377 ~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~ 456 (783)
++++++++++.+++|.. .| ++++.++.+++. ++++.
T Consensus 288 ~l~g~~~g~l~~~~p~~----------------~G------------------------~G~~~i~~~~~~----~~~~~ 323 (466)
T 3nd0_A 288 FLLGSIIGILSLFPLPL----------------TD------------------------GGDNAVLWAFNS----QSHFS 323 (466)
T ss_dssp HHHHHHHHHHTTSSSSC----------------SS------------------------SSHHHHHHHTTS----CCCHH
T ss_pred HHHHHHHHHHHHHHHHH----------------cC------------------------CcHHHHHHHHcC----CccHH
Confidence 88888889888887765 12 123445556643 46677
Q ss_pred HHHHHHHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHHhhcc---CCcchHHHHHHHhhhhhhhhhchhHHHHHH
Q 003966 457 SILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY---TNIDQGLYAVLGAASLMAGSMRMTVSLCVI 533 (783)
Q Consensus 457 ~l~~~~~~k~~lt~~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~~---~~~~~~~~alvGaaa~l~g~~r~pis~~vi 533 (783)
.+++++++|+++|++|+|+|+|||+|+|++++||++|+++|.+++.. ...+|+.||++||||+++|++|+|+|+++|
T Consensus 324 ~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~a~vGmaa~~a~v~~aPlt~ivl 403 (466)
T 3nd0_A 324 TLILVFCGRFLLTLICYGSGAIGGIFAPMLGIASIVSVAMARHFHLLFPSQIPEPAVMAIAGMGALVAATVRAPLTAILL 403 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCBCCSHHHHHHHHHHHHHHHHHHHHHHCTTTCSSTHHHHHHTTSHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCceehHHHHHHHHHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 88899999999999999999999999999999999999999988652 257999999999999999999999999999
Q ss_pred HHHHhCCchhHHHHHHHHHHHHHHHhhc-CccHHHHHHHh
Q 003966 534 FLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYEIILEL 572 (783)
Q Consensus 534 ~~ElTg~~~~l~pimia~~ia~~v~~~~-~~~iy~~~l~~ 572 (783)
++|+||++++++|+|+++++|+++++.+ ++++||.++++
T Consensus 404 v~Eltg~~~~~lpl~ia~~iA~~v~~~~~~~~iY~~~l~r 443 (466)
T 3nd0_A 404 TIEMTDNYFVILPLLVTCLVASVVAEALGGKPIYTVLLER 443 (466)
T ss_dssp HHHTTCCCTTHHHHHHHHHHHHHHHTTSCCCCHHHHHHHH
T ss_pred HHHHHCChHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 9999999999999999999999999999 79999999875
No 3
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=100.00 E-value=5.1e-68 Score=601.66 Aligned_cols=413 Identities=25% Similarity=0.419 Sum_probs=350.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHH
Q 003966 87 LKWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPE 166 (783)
Q Consensus 87 ~~w~~~~liGv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipe 166 (783)
..|++++++|+++|+++.+|+..+++++++++......... ....|+.|++++++++++++++++++.|+++||||||
T Consensus 34 ~~~~~~~liGv~~Gl~~~~f~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ll~~~l~~~~~p~a~GsGip~ 111 (465)
T 1ots_A 34 AILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTADN--YPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPE 111 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSSCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--cccHHHHHHHHHHHHHHHHHHHHHHhCccccCCChHH
Confidence 35679999999999999999999999999998764332111 1122445667888888999999999999999999999
Q ss_pred HHHHHhCCCCCCcchhHHHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHhhcCCCCcccchhhhhhccCCcchhhhH
Q 003966 167 IKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDL 246 (783)
Q Consensus 167 v~~~lng~~~~~~l~~~tl~~K~~~~~~sv~sG~s~G~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~l 246 (783)
++++++|.+ +...+|+++.|++++++++++|+|+|||||++|+||++|++++| +++. ++++|||++
T Consensus 112 v~~~l~~~~--~~~~~r~~~~k~~~~~lti~sG~s~GrEGP~vqiGa~ig~~l~~-----------~~~l-~~~~~~r~l 177 (465)
T 1ots_A 112 IEGALEDQR--PVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLD-----------IFRL-KGDEARHTL 177 (465)
T ss_dssp HHHHHTTCS--CCCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHH-----------HTTC-CSHHHHHHH
T ss_pred HHHHHhCCC--CCCcHHHHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHHHH-----------Hhcc-CCHHHHHHH
Confidence 999999843 35568999999999999999999999999999999999999997 4442 378899999
Q ss_pred HHhhhhhhhhhhccCcccceeeeeeecchhhhhhh--HHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCcceeeeecCC
Q 003966 247 ITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSAL--LWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNV 324 (783)
Q Consensus 247 v~~GaAAGvaaaF~APigGvLFalE~~~~~~~~~~--~~~~f~~~~va~~v~~~~~~~~~~~~~~~fg~~~~~~f~~~~~ 324 (783)
++||+|||+||+|||||||++|++||+.++|+.+. ++++++++.+++++.+.+ +|..+ .|+++.
T Consensus 178 i~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v~~~~-----------~G~~~--~f~~~~- 243 (465)
T 1ots_A 178 LATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIF-----------NHEVA--LIDVGK- 243 (465)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTTSCSSSCCCCCHHHHHHHHHHHHHHHHHH-----------SCSCC--SSCCCC-
T ss_pred HHHHHHHHHHHHHCCchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH-----------cCCCc--eeecCC-
Confidence 99999999999999999999999999999998776 899999998888888753 34444 344442
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHhhhhccccccccCCCCCCCC
Q 003966 325 PVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFP 404 (783)
Q Consensus 325 ~~~~~~~~l~~~i~lGv~~Gllg~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~ 404 (783)
....++.++++++++|+++|++|.+|++++.+..++++++++.+++++++++++++++++++.+++|.+
T Consensus 244 ~~~~~~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gl~~g~l~~~~P~~----------- 312 (465)
T 1ots_A 244 LSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPAT----------- 312 (465)
T ss_dssp CCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCGGG-----------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHHHHHHHHHHHHhHhh-----------
Confidence 234567889999999999999999999999999998887654334556678889999999999988876
Q ss_pred CCCCCCCCCCCcccccCCCCCchhhHHHhhcCcHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHhhcCccccccchH
Q 003966 405 ETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLP 484 (783)
Q Consensus 405 ~~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~l~~~~~~k~~lt~~t~g~g~~gG~f~P 484 (783)
.| ++++.++.+|+. ++++..+++++++|+++|++|+|+|+|||+|+|
T Consensus 313 -----lG------------------------~G~~~i~~~~~~----~~~~~~l~~~~~~K~~~t~lt~gsG~~GGif~P 359 (465)
T 1ots_A 313 -----SG------------------------GGFNLIPIATAG----NFSMGMLVFIFVARVITTLLCFSSGAPGGIFAP 359 (465)
T ss_dssp -----SS------------------------CSTTHHHHHHHT----CSCHHHHHHHHHHHHHHHHHHHHTTCSSBSHHH
T ss_pred -----cC------------------------ChHHHHHHHHcC----CchHHHHHHHHHHHHHHHHHHHcCCCChhhhHH
Confidence 22 122345556653 456778888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcc---CCcchHHHHHHHhhhhhhhhhchhHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhc
Q 003966 485 IILMGSAYGRLLGMAMGSY---TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF 561 (783)
Q Consensus 485 ~l~iGa~~G~l~g~~~~~~---~~~~~~~~alvGaaa~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~ 561 (783)
++++||++|+++|.+++.. ...+|+.||++||||+++|++|+|+|+++|++|+||++++++|+|+++++|+++++.+
T Consensus 360 sl~iGA~~G~~~g~~~~~~~p~~~~~~~~~alvGmaa~~a~v~raPlt~ivlv~Eltg~~~~llpl~ia~~iA~~v~~~~ 439 (465)
T 1ots_A 360 MLALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFT 439 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHTHHHHHTSCCHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999987642 3478999999999999999999999999999999999999999999999999999998
Q ss_pred -CccHHHHHHHhc
Q 003966 562 -NPSIYEIILELK 573 (783)
Q Consensus 562 -~~~iy~~~l~~k 573 (783)
++++||.+++++
T Consensus 440 ~~~~iY~~~l~~~ 452 (465)
T 1ots_A 440 GGKPLYSAILART 452 (465)
T ss_dssp TCCCHHHHHHHHH
T ss_pred CCCChHHHHHHHH
Confidence 689999999865
No 4
>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...
Probab=100.00 E-value=3.2e-67 Score=591.67 Aligned_cols=410 Identities=25% Similarity=0.425 Sum_probs=341.1
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHH
Q 003966 88 KW-SLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPE 166 (783)
Q Consensus 88 ~w-~~~~liGv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipe 166 (783)
+| ++++++|+++|+++.+|+..+++++++++....+. ....+..|+.++.++.++++++++++++++|+++||||||
T Consensus 19 ~~~~~~~liGi~~Gl~~~~f~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGip~ 96 (446)
T 4ene_A 19 AILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHT--ADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPE 96 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSSCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccchHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHH
Confidence 44 48999999999999999999999999988764432 1122333445556677778888999999999999999999
Q ss_pred HHHHHhCCCCCCcchhHHHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHhhcCCCCcccchhhhhhccCCcchhh-h
Q 003966 167 IKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRR-D 245 (783)
Q Consensus 167 v~~~lng~~~~~~l~~~tl~~K~~~~~~sv~sG~s~G~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r-~ 245 (783)
|+++++|. .+...+|+++.|++++++++++|+|+|||||+||+||++|++++| ++|. +++|+| +
T Consensus 97 v~~~l~~~--~~~~~~r~~~~k~~~~~lti~~G~s~GrEGP~vqiGa~ig~~~~~-----------~~~~--~~~~~r~~ 161 (446)
T 4ene_A 97 IEGALEDQ--RPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLD-----------IFRL--KGDEARHT 161 (446)
T ss_dssp HHHHHHTC--SCCCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHH-----------HTTC--CSHHHHHH
T ss_pred HHHHHhCC--CccchHHHHHHHHHHHHHHHhcCCccCCcchHHHHHHHHHHHHHH-----------HcCC--CHHHHHHH
Confidence 99999974 234458999999999999999999999999999999999999997 4443 567776 9
Q ss_pred HHHhhhhhhhhhhccCcccceeeeeeecchhhhh--hhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCcceeeeecC
Q 003966 246 LITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRS--ALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSN 323 (783)
Q Consensus 246 lv~~GaAAGvaaaF~APigGvLFalE~~~~~~~~--~~~~~~f~~~~va~~v~~~~~~~~~~~~~~~fg~~~~~~f~~~~ 323 (783)
+++||+|||+||+|||||+|++|++||+.++|+. +.++++++++.+++++.+.+ +++++ .|+++.
T Consensus 162 ll~aGaaAG~aaaF~aPlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v~~~~-----------~g~~~--~~~~~~ 228 (446)
T 4ene_A 162 LLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIF-----------NHEVA--LIDVGK 228 (446)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTSCSSSCCCCCHHHHHHHHHHHHHHHHHT-----------TTTCC--SCCCCC
T ss_pred HHHHHHHHHHHHHhCCcchHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH-----------cCCCc--eeecCC
Confidence 9999999999999999999999999999988776 56899999999988888753 34433 345442
Q ss_pred CcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHhhhhccccccccCCCCCCC
Q 003966 324 VPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSF 403 (783)
Q Consensus 324 ~~~~~~~~~l~~~i~lGv~~Gllg~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~ 403 (783)
...++..++++++++|+++|++|.+|++++.+..+++++++.+...+.++.+.+++++++++.++.|..
T Consensus 229 -~~~~~~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~l~~~~p~~---------- 297 (446)
T 4ene_A 229 -LSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPAT---------- 297 (446)
T ss_dssp -CCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCGGG----------
T ss_pred -CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHhHhh----------
Confidence 234567899999999999999999999999999998887654333334445566777888888887765
Q ss_pred CCCCCCCCCCCCcccccCCCCCchhhHHHhhcCcHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHhhcCccccccch
Q 003966 404 PETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFL 483 (783)
Q Consensus 404 ~~~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~l~~~~~~k~~lt~~t~g~g~~gG~f~ 483 (783)
.| +.|+. ++.+++ +++++..+++++++|+++|++|+|+|+|||+|+
T Consensus 298 ------~G------------~G~~~------------i~~~~~----~~~~~~~L~~~~~~K~~~t~lt~gsG~~GGif~ 343 (446)
T 4ene_A 298 ------SG------------GGFNL------------IPIATA----GNFSMGMLVFIFVARVITTLLCFSSGAPGGIFA 343 (446)
T ss_dssp ------SS------------CCSTH------------HHHHHT----TCSCHHHHHHHHHHHHHHHHHHHTTTCSSBSHH
T ss_pred ------cC------------CcHHH------------HHHHHc----CCchHHHHHHHHHHHHHHHHHHHccCCCcchhH
Confidence 22 12433 344443 346677888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcc---CCcchHHHHHHHhhhhhhhhhchhHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh
Q 003966 484 PIILMGSAYGRLLGMAMGSY---TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDS 560 (783)
Q Consensus 484 P~l~iGa~~G~l~g~~~~~~---~~~~~~~~alvGaaa~l~g~~r~pis~~vi~~ElTg~~~~l~pimia~~ia~~v~~~ 560 (783)
|++++||++|+++|.+++.. ...+|+.||++||||+++|++|+|+|+++|++|+||++++++|+|+++++|+++++.
T Consensus 344 Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~a~vGmaa~~a~~~~aPlt~~vl~~Eltg~~~~~lpl~ia~~ia~~v~~~ 423 (446)
T 4ene_A 344 PMLALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQF 423 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHTHHHHHHTCCHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHCChhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987652 247899999999999999999999999999999999999999999999999999999
Q ss_pred c-CccHHHHHHHh
Q 003966 561 F-NPSIYEIILEL 572 (783)
Q Consensus 561 ~-~~~iy~~~l~~ 572 (783)
+ ++++||.++++
T Consensus 424 ~~~~~iY~~~l~r 436 (446)
T 4ene_A 424 TGGKPLYSAILAR 436 (446)
T ss_dssp TTCCCHHHHHHHH
T ss_pred hCCCChHHHHHHH
Confidence 9 79999998875
No 5
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=99.84 E-value=9.8e-21 Score=197.01 Aligned_cols=174 Identities=20% Similarity=0.320 Sum_probs=124.7
Q ss_pred CCCCCCCCCcccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHH
Q 003966 576 PFLDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 655 (783)
Q Consensus 576 p~l~~~~~~~l~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl 655 (783)
|.|.|..+ .+.+++|+|+|++ +++++.+++++.++.++|.++++++|||||++ ++++++|+|+++||+
T Consensus 1 P~L~~~~~-~~~~~~v~diMt~--~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~---------~~~~LvGiIt~~dl~ 68 (250)
T 2d4z_A 1 PELSWSSA-NKYNIQVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTP---------DTNTLLGSIDRTEVE 68 (250)
T ss_dssp --CCCCCC-CCSSCBTTSSSBS--SCCCEETTCBHHHHHHHHHHCCCSEEEEESCT---------TTCBEEEEEEHHHHH
T ss_pred CCCCCCCc-ccCCCChHHhcCC--CCeEECCCCCHHHHHHHHHhcCCCEEEEEecC---------CCCeEEEEEEHHHHH
Confidence 56777666 7788999999999 99999999999999999999999999999873 337899999999999
Q ss_pred HHHHhchhhhhhc-cc---------hhHH-------HhhhhhhHH-----------------------------------
Q 003966 656 LALKKKWFLQEKR-RT---------EEWE-------VREKFSWVE----------------------------------- 683 (783)
Q Consensus 656 ~lL~~~~f~~~~~-~~---------~~~~-------~~~~~~~~d----------------------------------- 683 (783)
.++........+. +. ...+ ....+...+
T Consensus 69 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 148 (250)
T 2d4z_A 69 GLLQRRISAYRRQPAAAAEADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQ 148 (250)
T ss_dssp HHHHHHHHTTSSSCCCCCCBCCC---------------------------------------------------------
T ss_pred HHHHHhhhhhhhhhhhhhcccccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccc
Confidence 9876532111000 00 0000 000000000
Q ss_pred ----Hh----h--hcCCccccccChhh--------hhhccCccc-cccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeec
Q 003966 684 ----LA----E--REGKIEEVAVTSEE--------MEMYIDLHP-LTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK 744 (783)
Q Consensus 684 ----~~----~--~~~~i~di~~~~~~--------~~~~~dl~~-im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~ 744 (783)
.. . .....++++++.++ +++.+|+++ +||++|++|.+++||.+++.+|+++|++|+||++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~- 227 (250)
T 2d4z_A 149 TSGIYQKKQKGTGQVASRFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS- 227 (250)
T ss_dssp ------------------CCSCCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-
T ss_pred cccccccccccccccCcccccccChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE-
Confidence 00 0 01112333344333 667888885 7999999999999999999999999999999997
Q ss_pred cccCCCCcEEEEEehhhchhhHh
Q 003966 745 YEAAGVSPVVGILTRQDLRAFNI 767 (783)
Q Consensus 745 ~~~~~~~~vvGIITr~DLl~~~~ 767 (783)
+|+++|||||+||+++..
T Consensus 228 -----~GrLVGIVTrkDl~kai~ 245 (250)
T 2d4z_A 228 -----MGKLVGVVALAEIQAAIE 245 (250)
T ss_dssp -----TTEEEEEEEHHHHHHHHH
T ss_pred -----CCEEEEEEEHHHHHHHHH
Confidence 589999999999999764
No 6
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=99.75 E-value=1.7e-18 Score=169.57 Aligned_cols=150 Identities=19% Similarity=0.281 Sum_probs=114.1
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhh
Q 003966 586 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 665 (783)
Q Consensus 586 l~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~ 665 (783)
+++++|+|+|++ +++++++++++.++++.|.+++++++||+|++ ++++|+|+.+|+++.+.......
T Consensus 15 l~~~~V~diM~~--~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-----------g~lvGiit~~Dll~~~~~~~~~~ 81 (170)
T 4esy_A 15 IRQVPIRDILTS--PVVTVREDDTLDAVAKTMLEHQIGCAPVVDQN-----------GHLVGIITESDFLRGSIPFWIYE 81 (170)
T ss_dssp HHTSBGGGGCCS--CCCCEETTSBHHHHHHHHHHTTCSEEEEECTT-----------SCEEEEEEGGGGGGGTCCTTHHH
T ss_pred HcCCCHHHhcCC--CCcEECCcCcHHHHHHHHHHcCCeEEEEEcCC-----------ccEEEEEEHHHHHHHHhhccccc
Confidence 578899999999 99999999999999999999999999999987 89999999999976433221110
Q ss_pred hhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeecc
Q 003966 666 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 745 (783)
Q Consensus 666 ~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~ 745 (783)
.. ..........+... ..+......+.++|++++++|++++++.+|+++|.+.+++++||+|
T Consensus 82 ~~-----~~~~~~~~~~~~~~-----------~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd-- 143 (170)
T 4esy_A 82 AS-----EILSRAIPAPEVEH-----------LFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ-- 143 (170)
T ss_dssp HH-----HHHTTTSCHHHHHH-----------HHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE--
T ss_pred hh-----hhhhhccchhhHHh-----------hhccccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE--
Confidence 00 00000000000000 0011123567889999999999999999999999999999999997
Q ss_pred ccCCCCcEEEEEehhhchhhHhhhh
Q 003966 746 EAAGVSPVVGILTRQDLRAFNILTA 770 (783)
Q Consensus 746 ~~~~~~~vvGIITr~DLl~~~~~~~ 770 (783)
+|+++||||++|++++...+.
T Consensus 144 ----~g~lvGivt~~Dil~~l~~~~ 164 (170)
T 4esy_A 144 ----DGVPVGIVTRRDLLKLLLLEE 164 (170)
T ss_dssp ----TTEEEEEEEHHHHTTTSCCC-
T ss_pred ----CCEEEEEEEHHHHHHHHHhcc
Confidence 589999999999999876543
No 7
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=99.69 E-value=8.3e-17 Score=150.09 Aligned_cols=127 Identities=17% Similarity=0.227 Sum_probs=105.1
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhh
Q 003966 586 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 665 (783)
Q Consensus 586 l~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~ 665 (783)
+++++|+|+|++..+++++++++++.++++.|.+++++.+||+|++ .++++|+|+.+|++..+.+..
T Consensus 3 l~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~----------~~~~~Givt~~dl~~~~~~~~--- 69 (130)
T 3i8n_A 3 AQDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQ----------KDNIIGFVHRLELFKMQQSGS--- 69 (130)
T ss_dssp ----CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSS----------TTCEEEECCHHHHHHHHHTTT---
T ss_pred cCcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCC----------CCcEEEEEEHHHHHHHHhcCC---
Confidence 5778999999964478899999999999999999999999999863 169999999999987654321
Q ss_pred hhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeecc
Q 003966 666 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 745 (783)
Q Consensus 666 ~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~ 745 (783)
....++++| +++.++++++++.+++++|.+.+.+++||+|+
T Consensus 70 -------------------------------------~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~- 110 (130)
T 3i8n_A 70 -------------------------------------GQKQLGAVM-RPIQVVLNNTALPKVFDQMMTHRLQLALVVDE- 110 (130)
T ss_dssp -------------------------------------TTSBHHHHS-EECCEEETTSCHHHHHHHHHHHTCCEEEEECT-
T ss_pred -------------------------------------CcCCHHHHh-cCCcCcCCCCcHHHHHHHHHHcCCeEEEEEcC-
Confidence 012356677 45789999999999999999999999999997
Q ss_pred ccCCCCcEEEEEehhhchhhHhh
Q 003966 746 EAAGVSPVVGILTRQDLRAFNIL 768 (783)
Q Consensus 746 ~~~~~~~vvGIITr~DLl~~~~~ 768 (783)
+|+++|+||++|++++...
T Consensus 111 ----~g~~vGivt~~dil~~l~g 129 (130)
T 3i8n_A 111 ----YGTVLGLVTLEDIFEHLVG 129 (130)
T ss_dssp ----TSCEEEEEEHHHHHHHHHT
T ss_pred ----CCCEEEEEEHHHHHHHHcC
Confidence 7999999999999997653
No 8
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=99.69 E-value=6.8e-17 Score=150.93 Aligned_cols=128 Identities=13% Similarity=0.162 Sum_probs=106.1
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhh
Q 003966 588 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK 667 (783)
Q Consensus 588 ~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~ 667 (783)
+++|+|+|+++.+++++++++++.++++.|++++++.+||++++ +++++|+|+.+|+++.+.+.....
T Consensus 1 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~----------~~~lvGivt~~dl~~~~~~~~~~~-- 68 (130)
T 3hf7_A 1 KVSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDS----------LDDAISMLRVREAYRLMTEKKEFT-- 68 (130)
T ss_dssp CCBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSS----------GGGEEEEEEHHHHHHHHTSSSCCC--
T ss_pred CcCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCC----------CCcEEEEEEHHHHHHHHhccCccc--
Confidence 36899999754478999999999999999999999999999752 179999999999987654321000
Q ss_pred ccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeecccc
Q 003966 668 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA 747 (783)
Q Consensus 668 ~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~ 747 (783)
...++++| ++++++++++++.+++++|.+.+.+++||+|+
T Consensus 69 ------------------------------------~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~--- 108 (130)
T 3hf7_A 69 ------------------------------------KEIMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE--- 108 (130)
T ss_dssp ------------------------------------HHHHHHHS-BCCCEEETTCBHHHHHHHHHHHCCCEEEEECT---
T ss_pred ------------------------------------hhhHHHhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcC---
Confidence 01245567 67889999999999999999999999999997
Q ss_pred CCCCcEEEEEehhhchhhHhhh
Q 003966 748 AGVSPVVGILTRQDLRAFNILT 769 (783)
Q Consensus 748 ~~~~~vvGIITr~DLl~~~~~~ 769 (783)
+|+++||||++|++++...+
T Consensus 109 --~g~lvGiit~~Dil~~l~g~ 128 (130)
T 3hf7_A 109 --YGDIQGLVTVEDILEEIVGD 128 (130)
T ss_dssp --TSCEEEEEEHHHHHHHHHC-
T ss_pred --CCCEEEEeeHHHHHHHHhCC
Confidence 78999999999999987654
No 9
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=99.68 E-value=2.6e-16 Score=150.02 Aligned_cols=128 Identities=15% Similarity=0.235 Sum_probs=111.7
Q ss_pred cccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhh
Q 003966 585 WMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL 664 (783)
Q Consensus 585 ~l~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~ 664 (783)
.+.+++|+|+|+++.+++++++++++.++++.|.+++++.+||+|++ .++++|+|+.+|++..+.+..
T Consensus 19 ~l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~----------~~~lvGivt~~dl~~~~~~~~-- 86 (148)
T 3lv9_A 19 EFEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKN----------KDDILGFVHIRDLYNQKINEN-- 86 (148)
T ss_dssp GGGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSS----------TTSEEEEEEHHHHHHHHHHHS--
T ss_pred ccCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCC----------CCcEEEEEEHHHHHHHHhcCC--
Confidence 36789999999875578899999999999999999999999999873 158999999999987553211
Q ss_pred hhhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeec
Q 003966 665 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK 744 (783)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~ 744 (783)
..++.++| +++.++++++++.+++++|.+.+.+++||+|+
T Consensus 87 ---------------------------------------~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~ 126 (148)
T 3lv9_A 87 ---------------------------------------KIELEEIL-RDIIYISENLTIDKALERIRKEKLQLAIVVDE 126 (148)
T ss_dssp ---------------------------------------CCCGGGTC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred ---------------------------------------CccHHHhc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeC
Confidence 13567889 88999999999999999999999999999997
Q ss_pred cccCCCCcEEEEEehhhchhhHhhh
Q 003966 745 YEAAGVSPVVGILTRQDLRAFNILT 769 (783)
Q Consensus 745 ~~~~~~~~vvGIITr~DLl~~~~~~ 769 (783)
+|+++|+||++|++++...+
T Consensus 127 -----~g~~~Giit~~dil~~l~~~ 146 (148)
T 3lv9_A 127 -----YGGTSGVVTIEDILEEIVGE 146 (148)
T ss_dssp -----TSSEEEEEEHHHHHHHHHHT
T ss_pred -----CCCEEEEEEHHHHHHHHhCc
Confidence 78999999999999987764
No 10
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=99.68 E-value=1.2e-16 Score=154.35 Aligned_cols=131 Identities=15% Similarity=0.100 Sum_probs=109.2
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhc
Q 003966 589 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 668 (783)
Q Consensus 589 l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~ 668 (783)
.+++++|.++.+++++++++++.++++.|.+++++++||+|++ ++++|+|+.+|++..+.......
T Consensus 15 ~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~-----------~~lvGiit~~Di~~~~~~~~~~~--- 80 (156)
T 3k6e_A 15 GQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDE-----------KQFVGTIGLRDIMAYQMEHDLSQ--- 80 (156)
T ss_dssp TTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC------------CBEEEEEEHHHHHHHHHHHTCCH---
T ss_pred ccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCC-----------CcEEEEEEecchhhhhhhccccc---
Confidence 3688999987799999999999999999999999999999886 89999999999987654322110
Q ss_pred cchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccC
Q 003966 669 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA 748 (783)
Q Consensus 669 ~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~ 748 (783)
.. ....++.++|+++++++++++++.+++++|.+.+ .+||||+
T Consensus 81 -------------~~------------------~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~---- 123 (156)
T 3k6e_A 81 -------------EI------------------MADTDIVHMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVDA---- 123 (156)
T ss_dssp -------------HH------------------HTTSBGGGTCBCSCCCBCTTCCHHHHHHHTTTSS--EEEEECT----
T ss_pred -------------cc------------------ccccCHHHhhcCCceecccccHHHHHHHHHHHcC--CeEEEec----
Confidence 00 0124578899999999999999999999998765 5999998
Q ss_pred CCCcEEEEEehhhchhhHhhhhC
Q 003966 749 GVSPVVGILTRQDLRAFNILTAF 771 (783)
Q Consensus 749 ~~~~vvGIITr~DLl~~~~~~~~ 771 (783)
+|+++||||++|+++++....+
T Consensus 124 -~g~l~GiiT~~Dil~~~~~~~~ 145 (156)
T 3k6e_A 124 -EGIFQGIITRKSILKAVNALLH 145 (156)
T ss_dssp -TSBEEEEEEHHHHHHHHHHHSC
T ss_pred -CCEEEEEEEHHHHHHHHHHHhc
Confidence 8999999999999998865543
No 11
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=99.67 E-value=3.2e-16 Score=143.90 Aligned_cols=120 Identities=21% Similarity=0.269 Sum_probs=106.6
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhc
Q 003966 589 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 668 (783)
Q Consensus 589 l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~ 668 (783)
.+++|+|.+ ++.++++++++.++.+.|.+++++.+||+|++ ++++|+|+++|++..+.+..
T Consensus 1 ~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----------~~~~G~vt~~dl~~~~~~~~------ 61 (122)
T 3kpb_A 1 TLVKDILSK--PPITAHSNISIMEAAKILIKHNINHLPIVDEH-----------GKLVGIITSWDIAKALAQNK------ 61 (122)
T ss_dssp CBHHHHCCS--CCCCEETTSBHHHHHHHHHHHTCSCEEEECTT-----------SBEEEEECHHHHHHHHHTTC------
T ss_pred CchHHhhCC--CCEEeCCCCcHHHHHHHHHHcCCCeEEEECCC-----------CCEEEEEEHHHHHHHHHhcc------
Confidence 368999999 99999999999999999999999999999976 89999999999987554311
Q ss_pred cchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccC
Q 003966 669 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA 748 (783)
Q Consensus 669 ~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~ 748 (783)
..++++|++++.++++++++.+++++|.+.+.+++||+|+
T Consensus 62 ------------------------------------~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~---- 101 (122)
T 3kpb_A 62 ------------------------------------KTIEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDD---- 101 (122)
T ss_dssp ------------------------------------CBGGGTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECT----
T ss_pred ------------------------------------cCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECC----
Confidence 1467788899999999999999999999999999999997
Q ss_pred CCCcEEEEEehhhchhhHhh
Q 003966 749 GVSPVVGILTRQDLRAFNIL 768 (783)
Q Consensus 749 ~~~~vvGIITr~DLl~~~~~ 768 (783)
+|+++|+||++|+++++.+
T Consensus 102 -~g~~~Givt~~dl~~~l~~ 120 (122)
T 3kpb_A 102 -YRRVVGIVTSEDISRLFGG 120 (122)
T ss_dssp -TCBEEEEEEHHHHHHHHC-
T ss_pred -CCCEEEEEeHHHHHHHhhc
Confidence 7999999999999997654
No 12
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=99.67 E-value=5e-16 Score=152.34 Aligned_cols=130 Identities=19% Similarity=0.240 Sum_probs=109.3
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhh
Q 003966 586 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 665 (783)
Q Consensus 586 l~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~ 665 (783)
+..++|+|+|+++.+++++++++++.++++.|.+++++.+||+|++ .++++|+|+.+|++..+.+..
T Consensus 39 l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~----------~~~lvGivt~~dl~~~~~~~~--- 105 (172)
T 3lhh_A 39 LDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNN----------VDDMVGIISAKQLLSESIAGE--- 105 (172)
T ss_dssp ----CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSS----------TTSEEEEEEHHHHHHHHHTTC---
T ss_pred cCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCC----------CCeEEEEEEHHHHHHHHhhcC---
Confidence 5678999999943388999999999999999999999999999863 168999999999987553210
Q ss_pred hhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeecc
Q 003966 666 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 745 (783)
Q Consensus 666 ~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~ 745 (783)
..+++++| +++++|++++++.+++++|.+.+.+++||+|+
T Consensus 106 --------------------------------------~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~- 145 (172)
T 3lhh_A 106 --------------------------------------RLELVDLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDE- 145 (172)
T ss_dssp --------------------------------------CCCGGGGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECT-
T ss_pred --------------------------------------cccHHHHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeC-
Confidence 13578889 89999999999999999999999999999997
Q ss_pred ccCCCCcEEEEEehhhchhhHhhhhCC
Q 003966 746 EAAGVSPVVGILTRQDLRAFNILTAFP 772 (783)
Q Consensus 746 ~~~~~~~vvGIITr~DLl~~~~~~~~~ 772 (783)
+|+++||||++|++++...+...
T Consensus 146 ----~g~lvGiit~~Dil~~l~~~~~d 168 (172)
T 3lhh_A 146 ----YGDLKGLVTLQDMMDALTGEFFQ 168 (172)
T ss_dssp ----TSCEEEEEEHHHHHHHHHTTCC-
T ss_pred ----CCCEEEEeeHHHHHHHHhCCCcc
Confidence 78999999999999988776543
No 13
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=99.66 E-value=1.4e-16 Score=149.94 Aligned_cols=130 Identities=18% Similarity=0.243 Sum_probs=105.0
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhh
Q 003966 588 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK 667 (783)
Q Consensus 588 ~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~ 667 (783)
+++|+|+|+++.+++++++++++.++++.|.+++++.+||+|++ .++++|+|+.+|++..+.+..
T Consensus 2 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~----------~~~~vGivt~~dl~~~~~~~~----- 66 (136)
T 3lfr_A 2 DLQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGES----------HDDVLGVLLAKDLLPLILKAD----- 66 (136)
T ss_dssp -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSS----------TTCEEEEEEGGGGGGGGGSSS-----
T ss_pred CCChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCC----------CCcEEEEEEHHHHHHHHHhcc-----
Confidence 57899999943378999999999999999999999999999873 158999999999965432100
Q ss_pred ccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeecccc
Q 003966 668 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA 747 (783)
Q Consensus 668 ~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~ 747 (783)
.....++++|++ ++++++++++.+++++|.+.+.+++||+|+
T Consensus 67 ----------------------------------~~~~~v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~--- 108 (136)
T 3lfr_A 67 ----------------------------------GDSDDVKKLLRP-ATFVPESKRLNVLLREFRANHNHMAIVIDE--- 108 (136)
T ss_dssp ----------------------------------GGGCCGGGTCBC-CCEEETTCBHHHHHHHHHHHTCCEEEEECT---
T ss_pred ----------------------------------CCCcCHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeC---
Confidence 012356788865 899999999999999999999999999997
Q ss_pred CCCCcEEEEEehhhchhhHhhhhCC
Q 003966 748 AGVSPVVGILTRQDLRAFNILTAFP 772 (783)
Q Consensus 748 ~~~~~vvGIITr~DLl~~~~~~~~~ 772 (783)
+|+++||||++|++++...+...
T Consensus 109 --~g~lvGiit~~Dil~~l~~~~~d 131 (136)
T 3lfr_A 109 --YGGVAGLVTIEDVLEQIVGDIED 131 (136)
T ss_dssp --TSCEEEEEEHHHHHTTC------
T ss_pred --CCCEEEEEEHHHHHHHHhCCCcC
Confidence 78999999999999988766544
No 14
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=99.66 E-value=7.6e-16 Score=143.72 Aligned_cols=127 Identities=24% Similarity=0.303 Sum_probs=110.8
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhh
Q 003966 586 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 665 (783)
Q Consensus 586 l~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~ 665 (783)
|++++++|+|.+ ++.++++++++.++.+.|.+++++.+||+| + ++++|+|+++|++..+.+...
T Consensus 1 l~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-----------~~~~Givt~~dl~~~~~~~~~-- 64 (133)
T 2ef7_A 1 MEEEIVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVD-G-----------NKPVGIITERDIVKAIGKGKS-- 64 (133)
T ss_dssp CCCCBGGGTSBC--SCCEEETTCBHHHHHHHHHHHTCSEEEEEE-T-----------TEEEEEEEHHHHHHHHHTTCC--
T ss_pred CCcccHHHhccC--CCEEECCCCcHHHHHHHHHhcCCCEEEEEE-C-----------CEEEEEEcHHHHHHHHhcCCC--
Confidence 457899999999 899999999999999999999999999999 5 899999999999776543110
Q ss_pred hhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeecc
Q 003966 666 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 745 (783)
Q Consensus 666 ~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~ 745 (783)
....++++|++++.++++++++.++.++|.+.+.+++||+|+
T Consensus 65 -------------------------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~- 106 (133)
T 2ef7_A 65 -------------------------------------LETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDD- 106 (133)
T ss_dssp -------------------------------------TTCBGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECT-
T ss_pred -------------------------------------cccCHHHHcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECC-
Confidence 013467888889999999999999999999999999999997
Q ss_pred ccCCCCcEEEEEehhhchhhHhhhh
Q 003966 746 EAAGVSPVVGILTRQDLRAFNILTA 770 (783)
Q Consensus 746 ~~~~~~~vvGIITr~DLl~~~~~~~ 770 (783)
+|+++|+||++|+++.+.+..
T Consensus 107 ----~g~~~Giit~~dll~~~~~~~ 127 (133)
T 2ef7_A 107 ----KGNLKGIISIRDITRAIDDMF 127 (133)
T ss_dssp ----TSCEEEEEEHHHHHHHHHHHC
T ss_pred ----CCeEEEEEEHHHHHHHHHHHH
Confidence 789999999999999776554
No 15
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=99.66 E-value=1.9e-16 Score=147.58 Aligned_cols=126 Identities=17% Similarity=0.264 Sum_probs=105.2
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhh
Q 003966 587 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQE 666 (783)
Q Consensus 587 ~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~ 666 (783)
.+++|+|+|++..+++++++++++.++.+.|++++++.+||+|++ .++++|+|+.+|++..+.+
T Consensus 3 ~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~----------~~~~~Givt~~dl~~~~~~------ 66 (129)
T 3jtf_A 3 AERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDD----------RDNIIGILLAKDLLRYMLE------ 66 (129)
T ss_dssp -CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSS----------TTCEEEEEEGGGGGGGGTC------
T ss_pred CCCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCC----------CCcEEEEEEHHHHHhHhcc------
Confidence 467899999943388999999999999999999999999999873 1699999999998543211
Q ss_pred hccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccc
Q 003966 667 KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE 746 (783)
Q Consensus 667 ~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~ 746 (783)
...++.++|+ +++++++++++.+++++|.+.+.+++||+|+
T Consensus 67 ------------------------------------~~~~v~~~m~-~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~-- 107 (129)
T 3jtf_A 67 ------------------------------------PALDIRSLVR-PAVFIPEVKRLNVLLREFRASRNHLAIVIDE-- 107 (129)
T ss_dssp ------------------------------------TTSCGGGGCB-CCCEEETTCBHHHHHHHHHTSSCCEEEEECC--
T ss_pred ------------------------------------CCcCHHHHhC-CCeEeCCCCcHHHHHHHHHhcCCeEEEEEeC--
Confidence 0134667775 4889999999999999999999999999997
Q ss_pred cCCCCcEEEEEehhhchhhHhhhh
Q 003966 747 AAGVSPVVGILTRQDLRAFNILTA 770 (783)
Q Consensus 747 ~~~~~~vvGIITr~DLl~~~~~~~ 770 (783)
+|+++|+||++|++++...+.
T Consensus 108 ---~g~~~Giit~~Dil~~l~gei 128 (129)
T 3jtf_A 108 ---HGGISGLVTMEDVLEQIVGDI 128 (129)
T ss_dssp ----CCEEEEEEHHHHHHHHHHTC
T ss_pred ---CCCEEEEEEHHHHHHHHhCCC
Confidence 799999999999999877643
No 16
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=99.65 E-value=3.3e-16 Score=150.36 Aligned_cols=131 Identities=14% Similarity=0.154 Sum_probs=109.7
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeee-cCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhh
Q 003966 586 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVL-DEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL 664 (783)
Q Consensus 586 l~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVV-d~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~ 664 (783)
+.+++|+|+|+++.+++++++++++.++++.|.+++++.+||+ |++ .++++|+|+++|++..+.+..
T Consensus 17 l~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~----------~~~lvGivt~~dl~~~~~~~~-- 84 (153)
T 3oco_A 17 MNDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADND----------KDKIIGYAYNYDIVRQARIDD-- 84 (153)
T ss_dssp HHHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTE----------EEEEEEEEEHHHHHHHHHHHT--
T ss_pred cCCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCC----------CCcEEEEEEHHHHHhHHhcCC--
Confidence 4678999999854478899999999999999999999999999 542 179999999999987553211
Q ss_pred hhhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeec
Q 003966 665 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK 744 (783)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~ 744 (783)
...++++| ++++++.+++++.+++++|.+.+.+++||+|+
T Consensus 85 ---------------------------------------~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~ 124 (153)
T 3oco_A 85 ---------------------------------------KAKISTIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDE 124 (153)
T ss_dssp ---------------------------------------TSBGGGTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECT
T ss_pred ---------------------------------------CCcHHHHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeC
Confidence 13467889 89999999999999999999999999999997
Q ss_pred cccCCCCcEEEEEehhhchhhHhhhhCCc
Q 003966 745 YEAAGVSPVVGILTRQDLRAFNILTAFPH 773 (783)
Q Consensus 745 ~~~~~~~~vvGIITr~DLl~~~~~~~~~~ 773 (783)
+|+++||||++|++++...+...+
T Consensus 125 -----~g~~vGivt~~dil~~l~~~~~de 148 (153)
T 3oco_A 125 -----YGGTSGIITDKDVYEELFGNLRDE 148 (153)
T ss_dssp -----TSCEEEEECHHHHHHHHHC-----
T ss_pred -----CCCEEEEeeHHHHHHHHhccCCCc
Confidence 799999999999999888766543
No 17
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=99.65 E-value=1.5e-16 Score=147.65 Aligned_cols=124 Identities=20% Similarity=0.368 Sum_probs=102.7
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhh
Q 003966 588 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK 667 (783)
Q Consensus 588 ~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~ 667 (783)
+++|+|+|++..+++++++++++.++++.|.+++++.+||+|++ .++++|+|+.+|++..+.+..
T Consensus 2 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~----------~~~~vGivt~~dl~~~~~~~~----- 66 (127)
T 3nqr_A 2 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED----------KDHIEGILMAKDLLPFMRSDA----- 66 (127)
T ss_dssp -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSS----------TTCEEEEEEGGGGGGGGSTTC-----
T ss_pred CcCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCC----------CCcEEEEEEHHHHHHHHhccC-----
Confidence 57899999962259999999999999999999999999999873 158999999999965332110
Q ss_pred ccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeecccc
Q 003966 668 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA 747 (783)
Q Consensus 668 ~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~ 747 (783)
....++++|.+ ++++++++++.+++++|.+.+.+++||+|+
T Consensus 67 -----------------------------------~~~~v~~~m~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--- 107 (127)
T 3nqr_A 67 -----------------------------------EAFSMDKVLRT-AVVVPESKRVDRMLKEFRSQRYHMAIVIDE--- 107 (127)
T ss_dssp -----------------------------------CCCCHHHHCBC-CCEEETTCBHHHHHHHHHHTTCCEEEEECT---
T ss_pred -----------------------------------CCCCHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeC---
Confidence 01345667744 789999999999999999999999999997
Q ss_pred CCCCcEEEEEehhhchhhHh
Q 003966 748 AGVSPVVGILTRQDLRAFNI 767 (783)
Q Consensus 748 ~~~~~vvGIITr~DLl~~~~ 767 (783)
+|+++|+||++|++++..
T Consensus 108 --~g~~~Giit~~dll~~l~ 125 (127)
T 3nqr_A 108 --FGGVSGLVTIEDILELIV 125 (127)
T ss_dssp --TSCEEEEEEHHHHHHHC-
T ss_pred --CCCEEEEEEHHHHHHHHh
Confidence 789999999999998764
No 18
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=99.64 E-value=1.3e-15 Score=143.76 Aligned_cols=122 Identities=17% Similarity=0.253 Sum_probs=106.8
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCC--eEEEEEeHHHHHHHHHhchhhh
Q 003966 588 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVAT--ELHGLILRAHLVLALKKKWFLQ 665 (783)
Q Consensus 588 ~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~--~l~GiI~r~dLl~lL~~~~f~~ 665 (783)
+++++|+|.+ +++++++++++.++++.|.+++++.+||+|++ + +++|+|+++|++..+.+..
T Consensus 4 ~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----------~~~~~~Givt~~dl~~~~~~~~--- 67 (141)
T 2rih_A 4 AIRTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARD-----------NPKRPVAVVSERDILRAVAQRL--- 67 (141)
T ss_dssp -CBGGGGCCS--CCEEEETTCBHHHHHHHHHHHTCSEEEEEETT-----------EEEEEEEEEEHHHHHHHHHTTC---
T ss_pred ceEHHHHhcC--CCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CcceeEEEEEHHHHHHHHhcCC---
Confidence 4789999998 99999999999999999999999999999986 6 9999999999987553311
Q ss_pred hhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeecc
Q 003966 666 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 745 (783)
Q Consensus 666 ~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~ 745 (783)
+....+.++|++++.+++++ ++.+++++|.+.+.+++||+|+
T Consensus 68 ------------------------------------~~~~~v~~~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~- 109 (141)
T 2rih_A 68 ------------------------------------DLDGPAMPIANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNK- 109 (141)
T ss_dssp ------------------------------------CTTSBSGGGCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEECT-
T ss_pred ------------------------------------CCCCCHHHHcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcC-
Confidence 00135778899999999999 9999999999999999999997
Q ss_pred ccCCCCcEEEEEehhhchhhHh
Q 003966 746 EAAGVSPVVGILTRQDLRAFNI 767 (783)
Q Consensus 746 ~~~~~~~vvGIITr~DLl~~~~ 767 (783)
+|+++|+||++|++++..
T Consensus 110 ----~g~~~Giit~~dll~~~~ 127 (141)
T 2rih_A 110 ----NGELVGVLSIRDLCFERA 127 (141)
T ss_dssp ----TSCEEEEEEHHHHHSCHH
T ss_pred ----CCcEEEEEEHHHHHHHHH
Confidence 789999999999988654
No 19
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=99.64 E-value=4.3e-16 Score=144.74 Aligned_cols=124 Identities=12% Similarity=0.053 Sum_probs=108.0
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhh
Q 003966 587 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQE 666 (783)
Q Consensus 587 ~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~ 666 (783)
.+++++|+|.+ ++.++++++++.++.+.|++++++.+||+|+ ++++|+|+++|+.+.+.+..
T Consensus 3 ~s~~v~~~m~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~------------~~~~Givt~~dl~~~~~~~~---- 64 (128)
T 3gby_A 3 ASVTFSYLAET--DYPVFTLGGSTADAARRLAASGCACAPVLDG------------ERYLGMVHLSRLLEGRKGWP---- 64 (128)
T ss_dssp TTCBGGGGCBC--CSCCEETTSBHHHHHHHHHHHTCSEEEEEET------------TEEEEEEEHHHHHTTCSSSC----
T ss_pred cceEHHHhhcC--CcceECCCCCHHHHHHHHHHCCCcEEEEEEC------------CEEEEEEEHHHHHHHHhhCC----
Confidence 46899999999 8999999999999999999999999999987 69999999999965332110
Q ss_pred hccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccc
Q 003966 667 KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE 746 (783)
Q Consensus 667 ~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~ 746 (783)
.....++++|++++.++.+++++.+++++|.+.+.+++||+|+
T Consensus 65 -----------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~-- 107 (128)
T 3gby_A 65 -----------------------------------TVKEKLGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADE-- 107 (128)
T ss_dssp -----------------------------------CTTCBCCGGGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEECT--
T ss_pred -----------------------------------cccCcHHHHccCCCcEECCCCCHHHHHHHHHhCCCcEEEEECC--
Confidence 0013478889999999999999999999999999999999997
Q ss_pred cCCCCcEEEEEehhhchhhHhh
Q 003966 747 AAGVSPVVGILTRQDLRAFNIL 768 (783)
Q Consensus 747 ~~~~~~vvGIITr~DLl~~~~~ 768 (783)
+|+++|+||++|+++++.+
T Consensus 108 ---~g~~~Giit~~dll~~l~~ 126 (128)
T 3gby_A 108 ---DGRYEGVVSRKRILGFLAE 126 (128)
T ss_dssp ---TCBEEEEEEHHHHHHHHHT
T ss_pred ---CCCEEEEEEHHHHHHHHHh
Confidence 8999999999999997654
No 20
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=99.64 E-value=1.5e-15 Score=146.70 Aligned_cols=131 Identities=15% Similarity=0.129 Sum_probs=111.4
Q ss_pred cccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhh
Q 003966 585 WMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL 664 (783)
Q Consensus 585 ~l~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~ 664 (783)
.+..++|+|+|.+ ++ ++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|++..+.....
T Consensus 13 ~l~~~~v~~im~~--~~-~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~-----------~~~~Givt~~dl~~~~~~~~~- 77 (159)
T 3fv6_A 13 KLKKLQVKDFQSI--PV-VIHENVSVYDAICTMFLEDVGTLFVVDRD-----------AVLVGVLSRKDLLRASIGQQE- 77 (159)
T ss_dssp HHTTCBGGGSCBC--CC-EEETTSBHHHHHHHHHHHTCSEEEEECTT-----------SCEEEEEEHHHHHHHHTSCSC-
T ss_pred HHhhCCHHHHcCC--CE-EECCCCcHHHHHHHHHHCCCCEEEEEcCC-----------CcEEEEEeHHHHHHHhhccCc-
Confidence 3678899999987 65 99999999999999999999999999976 899999999999875532110
Q ss_pred hhhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccC--CCeeecCCCCHHHHHHHHHHcCCCEEEEe
Q 003966 665 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVV 742 (783)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~lpVV 742 (783)
.....++++|++ +++++.+++++.+++++|.+.+.+++||+
T Consensus 78 -------------------------------------~~~~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv 120 (159)
T 3fv6_A 78 -------------------------------------LTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVI 120 (159)
T ss_dssp -------------------------------------TTTCBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEE
T ss_pred -------------------------------------ccCcCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEE
Confidence 011356788887 88999999999999999999999999999
Q ss_pred eccccCCCC---cEEEEEehhhchhhHhhhhCC
Q 003966 743 PKYEAAGVS---PVVGILTRQDLRAFNILTAFP 772 (783)
Q Consensus 743 d~~~~~~~~---~vvGIITr~DLl~~~~~~~~~ 772 (783)
|+ +| +++|+||++|+++++.+-...
T Consensus 121 d~-----~g~~~~~vGiit~~dil~~l~~~~~~ 148 (159)
T 3fv6_A 121 KD-----TDKGFEVIGRVTKTNMTKILVSLSEN 148 (159)
T ss_dssp EE-----CSSSEEEEEEEEHHHHHHHHHHHHTT
T ss_pred eC-----CCcceeEEEEEEHHHHHHHHHHHhhc
Confidence 97 66 999999999999987765443
No 21
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=99.63 E-value=1e-15 Score=150.56 Aligned_cols=132 Identities=17% Similarity=0.167 Sum_probs=111.1
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhh
Q 003966 586 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 665 (783)
Q Consensus 586 l~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~ 665 (783)
+..++|+|+|+++.+++++++++++.++++.|++++++.+||+|++ .++++|+|+.+|++..+.+..
T Consensus 33 l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~----------~~~lvGivt~~Dl~~~~~~~~--- 99 (173)
T 3ocm_A 33 LAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGS----------LDEVVGIGRAKDLVADLITEG--- 99 (173)
T ss_dssp HTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSS----------TTSEEEEEEHHHHHHHHHHHS---
T ss_pred cCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCC----------CCCEEEEEEHHHHHHHHhcCC---
Confidence 4678999999754478999999999999999999999999999863 168999999999987553210
Q ss_pred hhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeecc
Q 003966 666 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 745 (783)
Q Consensus 666 ~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~ 745 (783)
..++. |.+++++|++++++.+++++|.+.+.+++||+|+
T Consensus 100 --------------------------------------~~~v~--~~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde- 138 (173)
T 3ocm_A 100 --------------------------------------RVRRN--RLRDPIIVHESIGILRLMDTLKRSRGQLVLVADE- 138 (173)
T ss_dssp --------------------------------------SCCGG--GSBCCCEECGGGCHHHHHHHHHHSTTCCEEEECT-
T ss_pred --------------------------------------cchhH--hcCCCeEECCCCcHHHHHHHHHHcCCeEEEEEeC-
Confidence 12345 3477889999999999999999999999999997
Q ss_pred ccCCCCcEEEEEehhhchhhHhhhhCCccc
Q 003966 746 EAAGVSPVVGILTRQDLRAFNILTAFPHLE 775 (783)
Q Consensus 746 ~~~~~~~vvGIITr~DLl~~~~~~~~~~l~ 775 (783)
+|+++||||++|+++....+...+..
T Consensus 139 ----~g~lvGiIT~~Dil~~l~~~i~de~~ 164 (173)
T 3ocm_A 139 ----FGAIEGLVTPIDVFEAIAGEFPDEDE 164 (173)
T ss_dssp ----TCCEEEEECHHHHHHHHHCCCCCTTS
T ss_pred ----CCCEEEEEeHHHHHHHHhCcCCCccc
Confidence 79999999999999998877665443
No 22
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=99.63 E-value=7.5e-16 Score=144.60 Aligned_cols=127 Identities=19% Similarity=0.302 Sum_probs=108.6
Q ss_pred cccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHH-HHHHHhchh
Q 003966 585 WMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHL-VLALKKKWF 663 (783)
Q Consensus 585 ~l~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dL-l~lL~~~~f 663 (783)
.+.+.+++|+|.+ ++.++++++++.++.+.|.+++++.+||+|++ ++++|+|+++|+ ...+.+...
T Consensus 4 ~l~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----------~~~~Givt~~dl~~~~~~~~~~ 70 (138)
T 2p9m_A 4 TLKNIKVKDVMTK--NVITAKRHEGVVEAFEKMLKYKISSLPVIDDE-----------NKVIGIVTTTDIGYNLIRDKYT 70 (138)
T ss_dssp -CTTCBGGGTSBC--SCCCEETTSBHHHHHHHHHHHTCCEEEEECTT-----------CBEEEEEEHHHHHHHHTTTCCC
T ss_pred ccccCCHHHhhcC--CceEECCCCcHHHHHHHHHHCCCcEEEEECCC-----------CeEEEEEEHHHHHHHHHhhccc
Confidence 4678999999998 89999999999999999999999999999976 899999999999 765432110
Q ss_pred hhhhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcC-----CCE
Q 003966 664 LQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVG-----LRH 738 (783)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~g-----lr~ 738 (783)
....++++|++++.++++++++.++.++|.+.+ .++
T Consensus 71 ---------------------------------------~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~ 111 (138)
T 2p9m_A 71 ---------------------------------------LETTIGDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQ 111 (138)
T ss_dssp ---------------------------------------SSCBHHHHSCSSCCCEETTSBHHHHHHHHTCC-----CCCE
T ss_pred ---------------------------------------CCcCHHHHhCCCcEEECCCCCHHHHHHHHHhcCCccccccE
Confidence 012456778889999999999999999999999 999
Q ss_pred EEEeeccccCCCCcEEEEEehhhchhhHhh
Q 003966 739 LLVVPKYEAAGVSPVVGILTRQDLRAFNIL 768 (783)
Q Consensus 739 lpVVd~~~~~~~~~vvGIITr~DLl~~~~~ 768 (783)
+||+|+ +|+++|+||++|+++...+
T Consensus 112 l~Vvd~-----~g~~~Giit~~dll~~~~~ 136 (138)
T 2p9m_A 112 LPVVDK-----NNKLVGIISDGDIIRTISK 136 (138)
T ss_dssp EEEECT-----TSBEEEEEEHHHHHHHHHH
T ss_pred EEEECC-----CCeEEEEEEHHHHHHHHHh
Confidence 999997 7899999999999987654
No 23
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=99.63 E-value=1.6e-15 Score=142.50 Aligned_cols=128 Identities=9% Similarity=0.163 Sum_probs=110.2
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHH-HHHhchhh
Q 003966 586 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL-ALKKKWFL 664 (783)
Q Consensus 586 l~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~-lL~~~~f~ 664 (783)
+..++++|+|.+ +++++++++++.++.+.|.+++++.+||+|++ ++++|+|+++|+++ .+.+..
T Consensus 4 l~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----------~~~~Givt~~dl~~~~~~~~~-- 68 (138)
T 2yzi_A 4 DMKAPIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDD-----------GNVVGFFTKSDIIRRVIVPGL-- 68 (138)
T ss_dssp CTTSBGGGTCBC--CCCEECTTSBHHHHHHHHHHHTCSEEEEECTT-----------SCEEEEEEHHHHHHHTTTTCC--
T ss_pred hhhhhHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CcEEEEEeHHHHHHHHHhcCC--
Confidence 567899999998 99999999999999999999999999999976 89999999999963 222110
Q ss_pred hhhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeec
Q 003966 665 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK 744 (783)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~ 744 (783)
.....++++|++++.++++++++.+++++|.+.+.+++ |+|+
T Consensus 69 -------------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~ 110 (138)
T 2yzi_A 69 -------------------------------------PYDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEE 110 (138)
T ss_dssp -------------------------------------CTTSBGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEE
T ss_pred -------------------------------------cccCCHHHHhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECC
Confidence 01235778899999999999999999999999999999 9997
Q ss_pred cccCCCCcEEEEEehhhchhhHhhhhC
Q 003966 745 YEAAGVSPVVGILTRQDLRAFNILTAF 771 (783)
Q Consensus 745 ~~~~~~~~vvGIITr~DLl~~~~~~~~ 771 (783)
+|+++|+||++|+++....+..
T Consensus 111 -----~g~~~Giit~~dil~~~~~~~~ 132 (138)
T 2yzi_A 111 -----EGKIVGIFTLSDLLEASRRRLE 132 (138)
T ss_dssp -----TTEEEEEEEHHHHHHHHHCCSC
T ss_pred -----CCCEEEEEEHHHHHHHHHHHHH
Confidence 7899999999999998776543
No 24
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=99.62 E-value=2.6e-15 Score=145.96 Aligned_cols=138 Identities=15% Similarity=0.103 Sum_probs=114.5
Q ss_pred CCCCCcccccccccccccC-CCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHH
Q 003966 580 AHPEPWMRTLTVGELIDAK-PPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL 658 (783)
Q Consensus 580 ~~~~~~l~~l~v~dvM~~~-~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL 658 (783)
......+..++|+|+|.++ .+++++++++++.++++.|.+++++.+||+|++ ++++|+|+++|+++.+
T Consensus 15 ~~~~~~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-----------~~~~Givt~~dl~~~~ 83 (165)
T 3fhm_A 15 ENLYFQGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDAD-----------GVVLGIFTERDLVKAV 83 (165)
T ss_dssp -CCCCSSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT-----------SCEEEEEEHHHHHHHH
T ss_pred chhhHhhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----------CeEEEEEEHHHHHHHH
Confidence 3445668899999999852 268899999999999999999999999999976 8999999999998765
Q ss_pred HhchhhhhhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCE
Q 003966 659 KKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRH 738 (783)
Q Consensus 659 ~~~~f~~~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~ 738 (783)
.+... ......++++|++++.++.+++++.+++++|.+.+.++
T Consensus 84 ~~~~~-------------------------------------~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~ 126 (165)
T 3fhm_A 84 AGQGA-------------------------------------ASLQQSVSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRH 126 (165)
T ss_dssp HHHGG-------------------------------------GGGTSBGGGTSBSSCCCBCTTCBHHHHHHHHHHHTCSE
T ss_pred HhcCC-------------------------------------ccccCCHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCE
Confidence 43210 00123577889999999999999999999999999999
Q ss_pred EEEeeccccCCCCcEEEEEehhhchhhHhhhhC
Q 003966 739 LLVVPKYEAAGVSPVVGILTRQDLRAFNILTAF 771 (783)
Q Consensus 739 lpVVd~~~~~~~~~vvGIITr~DLl~~~~~~~~ 771 (783)
+||+| +|+++|+||++|+++++..+..
T Consensus 127 lpVvd------~g~~~Giit~~dil~~~~~~~~ 153 (165)
T 3fhm_A 127 VPVEE------NGRLAGIISIGDVVKARIGEIE 153 (165)
T ss_dssp EEEEE------TTEEEEEEEHHHHHHHTTCC--
T ss_pred EEEEE------CCEEEEEEEHHHHHHHHHHHHH
Confidence 99998 4799999999999998766543
No 25
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=99.62 E-value=1e-15 Score=146.23 Aligned_cols=121 Identities=10% Similarity=0.117 Sum_probs=104.2
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhc
Q 003966 589 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 668 (783)
Q Consensus 589 l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~ 668 (783)
++++|+|.+..+++++++++++.++++.|.+++++.+||+|++ ++++|+|+++|++..+.+...
T Consensus 28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~-----------~~~~Givt~~dl~~~~~~~~~----- 91 (149)
T 3k2v_A 28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDD-----------MNIIGIFTDGDLRRVFDTGVD----- 91 (149)
T ss_dssp SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTT-----------CBEEEEEEHHHHHHHHCSSSC-----
T ss_pred cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCC-----------CcEEEEecHHHHHHHHhcCCC-----
Confidence 5999999864467899999999999999999999999999976 899999999999876543110
Q ss_pred cchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccC
Q 003966 669 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA 748 (783)
Q Consensus 669 ~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~ 748 (783)
.....+.++|++++.++.+++++.+++++|.+.+.+++||+|+
T Consensus 92 ---------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---- 134 (149)
T 3k2v_A 92 ---------------------------------MRDASIADVMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADG---- 134 (149)
T ss_dssp ---------------------------------CTTCBHHHHSEESCCEECTTCBHHHHHHHHHHHTCSEEEEEET----
T ss_pred ---------------------------------cccCcHHHHcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecC----
Confidence 0113467788889999999999999999999999999999996
Q ss_pred CCCcEEEEEehhhchh
Q 003966 749 GVSPVVGILTRQDLRA 764 (783)
Q Consensus 749 ~~~~vvGIITr~DLl~ 764 (783)
+ +++|+||++|+++
T Consensus 135 -~-~~~Giit~~dil~ 148 (149)
T 3k2v_A 135 -D-HLLGVVHMHDLLR 148 (149)
T ss_dssp -T-EEEEEEEHHHHTC
T ss_pred -C-EEEEEEEHHHhhc
Confidence 4 9999999999986
No 26
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=99.61 E-value=9.5e-16 Score=145.98 Aligned_cols=142 Identities=23% Similarity=0.301 Sum_probs=109.7
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhh
Q 003966 587 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQE 666 (783)
Q Consensus 587 ~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~ 666 (783)
+.++++|+|.++.+++++++++++.++++.|.+++++.+||+|++ ++++|+|+++|++..+.....
T Consensus 3 ~~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----------~~~~G~vt~~dl~~~~~~~~~--- 68 (152)
T 4gqw_A 3 GVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDED-----------WKLVGLVSDYDLLALDSGDST--- 68 (152)
T ss_dssp CCSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTT-----------CBEEEEEEHHHHTTCC----C---
T ss_pred ceEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCC-----------CeEEEEEEHHHHHHhhcccCc---
Confidence 468999999875568899999999999999999999999999986 899999999999653321100
Q ss_pred hccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccc
Q 003966 667 KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE 746 (783)
Q Consensus 667 ~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~ 746 (783)
...+.+..... .......+.++|+++++++++++++.+++++|.+.+.+++||+|+
T Consensus 69 --------------~~~~~~~~~~~--------~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~-- 124 (152)
T 4gqw_A 69 --------------WKTFNAVQKLL--------SKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDS-- 124 (152)
T ss_dssp --------------CHHHHHHHTC-------------CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECT--
T ss_pred --------------ccchHHHHHHH--------HHhccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECC--
Confidence 00000000000 001124577889999999999999999999999999999999997
Q ss_pred cCCCCcEEEEEehhhchhhHhhh
Q 003966 747 AAGVSPVVGILTRQDLRAFNILT 769 (783)
Q Consensus 747 ~~~~~~vvGIITr~DLl~~~~~~ 769 (783)
+|+++|+||++|+++++.+.
T Consensus 125 ---~g~~~Giit~~dil~~~~~~ 144 (152)
T 4gqw_A 125 ---DGKLVGIITRGNVVRAALQI 144 (152)
T ss_dssp ---TSBEEEEEEHHHHHHHHHC-
T ss_pred ---CCcEEEEEEHHHHHHHHHhc
Confidence 78999999999999987654
No 27
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=99.61 E-value=1.8e-15 Score=144.26 Aligned_cols=137 Identities=19% Similarity=0.122 Sum_probs=112.4
Q ss_pred CcccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchh
Q 003966 584 PWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWF 663 (783)
Q Consensus 584 ~~l~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f 663 (783)
..+..++++|+|.+..+++++++++++.++++.|.+++++.+||+|++ ++++|+|+++|++..+.....
T Consensus 10 ~~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~-----------~~~~Givt~~dl~~~~~~~~~ 78 (150)
T 3lqn_A 10 DEFQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPM-----------YKLHGLISTAMILDGILGLER 78 (150)
T ss_dssp HHHHHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-----------CBEEEEEEHHHHHHHTBCSSS
T ss_pred HhhhcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCC-----------CCEEEEEEHHHHHHHHHhhcc
Confidence 456789999999952268999999999999999999999999999976 899999999999876532110
Q ss_pred hhhhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEee
Q 003966 664 LQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVP 743 (783)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd 743 (783)
.. .+......+.++|++++.++.+++++.+++++|.+.+. +||+|
T Consensus 79 ~~---------------------------------~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd 123 (150)
T 3lqn_A 79 IE---------------------------------FERLEEMKVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVN 123 (150)
T ss_dssp BC---------------------------------GGGGGGCBGGGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEEC
T ss_pred cc---------------------------------hhHHhcCCHHHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEEC
Confidence 00 00011245788999999999999999999999999987 99999
Q ss_pred ccccCCCCcEEEEEehhhchhhHhhhhC
Q 003966 744 KYEAAGVSPVVGILTRQDLRAFNILTAF 771 (783)
Q Consensus 744 ~~~~~~~~~vvGIITr~DLl~~~~~~~~ 771 (783)
+ +|+++|+||++|+++++.+...
T Consensus 124 ~-----~g~~~Giit~~dil~~l~~~~~ 146 (150)
T 3lqn_A 124 E-----DGYFEGILTRRAILKLLNKKVR 146 (150)
T ss_dssp T-----TCBEEEEEEHHHHHHHHHHHC-
T ss_pred C-----CCcEEEEEEHHHHHHHHHHHhH
Confidence 7 7999999999999998776553
No 28
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=99.60 E-value=7.6e-16 Score=148.50 Aligned_cols=122 Identities=19% Similarity=0.290 Sum_probs=103.2
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhh
Q 003966 586 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 665 (783)
Q Consensus 586 l~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~ 665 (783)
++.++|+|+|+++.+++++++++++.++++.|.+++++.+||+|++ .++++|+|+.+|++..+.+.
T Consensus 35 l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~----------~~~lvGivt~~dl~~~~~~~---- 100 (156)
T 3oi8_A 35 FSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGED----------KDEVLGILHAKDLLKYMFNP---- 100 (156)
T ss_dssp HTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSS----------TTCEEEEEEGGGGGGGSSCG----
T ss_pred cCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCC----------CCcEEEEEEHHHHHHHHHcC----
Confidence 5678999999864478899999999999999999999999999875 14999999999996532110
Q ss_pred hhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeecc
Q 003966 666 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 745 (783)
Q Consensus 666 ~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~ 745 (783)
....++++|++ +++|++++++.+++++|.+.+.+++||+|+
T Consensus 101 -------------------------------------~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~- 141 (156)
T 3oi8_A 101 -------------------------------------EQFHLKSILRP-AVFVPEGKSLTALLKEFREQRNHMAIVIDE- 141 (156)
T ss_dssp -------------------------------------GGCCHHHHCBC-CCEEETTSBHHHHHHHHHHTTCCEEEEECT-
T ss_pred -------------------------------------CcccHHHHcCC-CEEECCCCCHHHHHHHHHhcCCeEEEEECC-
Confidence 01345677755 889999999999999999999999999998
Q ss_pred ccCCCCcEEEEEehhhchh
Q 003966 746 EAAGVSPVVGILTRQDLRA 764 (783)
Q Consensus 746 ~~~~~~~vvGIITr~DLl~ 764 (783)
+|+++||||++|+++
T Consensus 142 ----~g~~~Givt~~Dile 156 (156)
T 3oi8_A 142 ----YGGTSGLVTFEDIIE 156 (156)
T ss_dssp ----TSSEEEEEEHHHHCC
T ss_pred ----CCCEEEEEEHHHhcC
Confidence 789999999999863
No 29
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=99.60 E-value=3.2e-15 Score=137.64 Aligned_cols=123 Identities=11% Similarity=0.134 Sum_probs=104.2
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhc
Q 003966 589 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 668 (783)
Q Consensus 589 l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~ 668 (783)
++++|+|.+ ++.++++++++.++.+.|.+++++.+||+| + ++++|+|+++|++..+.+....
T Consensus 1 m~v~~~m~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-----------~~~~G~it~~dl~~~~~~~~~~---- 62 (125)
T 1pbj_A 1 MRVEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVK-E-----------GVRVGIVTTWDVLEAIAEGDDL---- 62 (125)
T ss_dssp -CHHHHCBC--SCCEEETTCBHHHHHHHHHHHCCCEEEEEE-T-----------TEEEEEEEHHHHHHHHHHTCCT----
T ss_pred CCHHHhcCC--CceEECCCCcHHHHHHHHHHcCCCEEEEEe-C-----------CeeEEEEeHHHHHHHHhcCCcc----
Confidence 478999998 999999999999999999999999999999 5 8999999999998765431100
Q ss_pred cchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccC
Q 003966 669 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA 748 (783)
Q Consensus 669 ~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~ 748 (783)
....++++|++++.++.+++++.+++++|.+.+.+++||+|
T Consensus 63 ----------------------------------~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd----- 103 (125)
T 1pbj_A 63 ----------------------------------AEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE----- 103 (125)
T ss_dssp ----------------------------------TTSBHHHHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEE-----
T ss_pred ----------------------------------cccCHHHHcCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEE-----
Confidence 01346677888899999999999999999999999999998
Q ss_pred CCCcEEEEEehhhchhhHhhh
Q 003966 749 GVSPVVGILTRQDLRAFNILT 769 (783)
Q Consensus 749 ~~~~vvGIITr~DLl~~~~~~ 769 (783)
+|+++|+||++|+++....+
T Consensus 104 -~~~~~Gvit~~dl~~~l~~~ 123 (125)
T 1pbj_A 104 -DDEIIGVISATDILRAKMAK 123 (125)
T ss_dssp -TTEEEEEEEHHHHHHHHC--
T ss_pred -CCEEEEEEEHHHHHHHHHhc
Confidence 37899999999999876543
No 30
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=99.60 E-value=1.3e-15 Score=149.70 Aligned_cols=158 Identities=18% Similarity=0.232 Sum_probs=111.2
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhh
Q 003966 588 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK 667 (783)
Q Consensus 588 ~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~ 667 (783)
.++|+|+|.++.+++++++++++.++++.|.+++++.+||+|++ ++++|+|+++|++..+.... .
T Consensus 3 ~~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~-----------~~~~Givt~~dl~~~~~~~~----~ 67 (180)
T 3sl7_A 3 GYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDN-----------WTLVGVVSDYDLLALDSISG----R 67 (180)
T ss_dssp CCBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-----------CBEEEEEEHHHHTCC----------
T ss_pred ceeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCC-----------CeEEEEEEHHHHHhhhhhcc----c
Confidence 47899999875468899999999999999999999999999986 89999999999974321100 0
Q ss_pred ccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeecccc
Q 003966 668 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA 747 (783)
Q Consensus 668 ~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~ 747 (783)
.... ..... +.........+..- .........++++|++++++|++++++.+++++|.+.+.+++||+|+
T Consensus 68 ~~~~-~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--- 137 (180)
T 3sl7_A 68 SQND-TNLFP-----DVDSTWKTFNELQK-LISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDA--- 137 (180)
T ss_dssp -------------------CCCSHHHHHH-HHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECT---
T ss_pred cCCc-ccccc-----cccchhhhhHHHHH-HHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECC---
Confidence 0000 00000 00000000000000 00001224578899999999999999999999999999999999997
Q ss_pred CCCCcEEEEEehhhchhhHhhhhCC
Q 003966 748 AGVSPVVGILTRQDLRAFNILTAFP 772 (783)
Q Consensus 748 ~~~~~vvGIITr~DLl~~~~~~~~~ 772 (783)
+|+++|+||++|++++.......
T Consensus 138 --~g~~vGiit~~dil~~~~~~~~~ 160 (180)
T 3sl7_A 138 --DGKLIGILTRGNVVRAALQIKRN 160 (180)
T ss_dssp --TCBEEEEEEHHHHHHHHHHHHHT
T ss_pred --CCeEEEEEEHHHHHHHHHHHhhh
Confidence 79999999999999988765443
No 31
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.59 E-value=5.6e-15 Score=142.30 Aligned_cols=141 Identities=16% Similarity=0.169 Sum_probs=111.3
Q ss_pred cccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCe-eeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhch-
Q 003966 585 WMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNG-FPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKW- 662 (783)
Q Consensus 585 ~l~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~-fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~- 662 (783)
....++|+|+|.+ +++++++++++.++++.|.+++++. +||+|+ ++++|+|+++|++..+....
T Consensus 12 ~~~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~------------~~~vGivt~~dl~~~~~~~~~ 77 (157)
T 1o50_A 12 HMKVKDVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARD------------NKLVGMIPVMHLLKVSGFHFF 77 (157)
T ss_dssp TCBHHHHTTSSCC--CCEEECTTCBHHHHHHHHHHSTTCCEEEEEET------------TEEEEEEEHHHHHHHHHHHHH
T ss_pred hhccccHhhcccC--CCceECCCCCHHHHHHHHHhCCCCccEEEEEC------------CEEEEEEEHHHHHHHHhhhHH
Confidence 4567899999999 9999999999999999999999999 999987 48999999999987653210
Q ss_pred -hhhhhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEE
Q 003966 663 -FLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLV 741 (783)
Q Consensus 663 -f~~~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpV 741 (783)
+... ...+.+. . .......++++|++ +.++++++++.+++++|.+.+.+++||
T Consensus 78 ~~~~~--------------~~~~~~~---~--------~~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpV 131 (157)
T 1o50_A 78 GFIPK--------------EELIRSS---M--------KRLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPV 131 (157)
T ss_dssp CCCC---------------------C---C--------CCCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEE
T ss_pred hhhcc--------------HHHHHHH---H--------HHHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEE
Confidence 0000 0000000 0 00112457788999 999999999999999999999999999
Q ss_pred eeccccCCCCcEEEEEehhhchhhHhhhh
Q 003966 742 VPKYEAAGVSPVVGILTRQDLRAFNILTA 770 (783)
Q Consensus 742 Vd~~~~~~~~~vvGIITr~DLl~~~~~~~ 770 (783)
+|+ +|+++|+||++|+++...++.
T Consensus 132 vd~-----~g~~vGiit~~dll~~l~~~~ 155 (157)
T 1o50_A 132 VDE-----KGEIVGDLNSLEILLALWKGR 155 (157)
T ss_dssp ECT-----TSCEEEEEEHHHHHHHHHHSC
T ss_pred EcC-----CCEEEEEEEHHHHHHHHHHhh
Confidence 997 789999999999999876543
No 32
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=99.59 E-value=4.9e-15 Score=142.37 Aligned_cols=134 Identities=14% Similarity=0.093 Sum_probs=110.3
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhh
Q 003966 586 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 665 (783)
Q Consensus 586 l~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~ 665 (783)
+...+++|+|.+..+++++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+|++..+.......
T Consensus 12 l~~~~v~dim~p~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~-----------~~~~Giit~~dl~~~~~~~~~~~ 80 (156)
T 3ctu_A 12 FLLGQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDE-----------KQFVGTIGLRDIMAYQMEHDLSQ 80 (156)
T ss_dssp HHHTTGGGGEEEGGGCCCEETTSBHHHHHHHHTTCSSSEEEEECC------------CBEEEEEEHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHHcCcccCceEECCCCCHHHHHHHHHHCCCceEeEECCC-----------CEEEEEEcHHHHHHHHHhccccc
Confidence 3456799999943389999999999999999999999999999976 89999999999987665421100
Q ss_pred hhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeecc
Q 003966 666 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 745 (783)
Q Consensus 666 ~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~ 745 (783)
.+ .....++++|++++.++.+++++.+++++|.+.+ ++||+|+
T Consensus 81 ----------------~~------------------~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~--~lpVvd~- 123 (156)
T 3ctu_A 81 ----------------EI------------------MADTDIVHMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVDA- 123 (156)
T ss_dssp ----------------HH------------------HTTSBGGGGCBCSCCCBCSSCCHHHHHHHTTTSS--EEEEECT-
T ss_pred ----------------cc------------------cccCcHHHhccCCceeeCCCCcHHHHHHHHHHcC--eEEEEcC-
Confidence 00 0124578889999999999999999999999886 7999997
Q ss_pred ccCCCCcEEEEEehhhchhhHhhhhC
Q 003966 746 EAAGVSPVVGILTRQDLRAFNILTAF 771 (783)
Q Consensus 746 ~~~~~~~vvGIITr~DLl~~~~~~~~ 771 (783)
+|+++|+||++|+++++.+...
T Consensus 124 ----~g~~~Giit~~dil~~l~~~~~ 145 (156)
T 3ctu_A 124 ----EGIFQGIITRKSILKAVNALLH 145 (156)
T ss_dssp ----TSBEEEEEETTHHHHHHHHHSC
T ss_pred ----CCeEEEEEEHHHHHHHHHHHHH
Confidence 7999999999999998776554
No 33
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=99.58 E-value=6.5e-15 Score=141.44 Aligned_cols=137 Identities=20% Similarity=0.137 Sum_probs=109.8
Q ss_pred cccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhh
Q 003966 585 WMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL 664 (783)
Q Consensus 585 ~l~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~ 664 (783)
.+..++++|+|.+..+++++++++++.++++.|.+++++.+||+|++ ++++|+|+++|++..+.+...
T Consensus 7 ~l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~-----------~~~~Givt~~dl~~~~~~~~~- 74 (157)
T 2emq_A 7 EFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTS-----------YKLHGLISMTMMMDAILGLER- 74 (157)
T ss_dssp ---CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTT-----------CCEEEEEEHHHHHHHSBCSSS-
T ss_pred hHhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCC-----------CCEEEEeeHHHHHHHHhcccc-
Confidence 35678999999843367899999999999999999999999999976 899999999999765432100
Q ss_pred hhhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeec
Q 003966 665 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK 744 (783)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~ 744 (783)
+.. +......++++|++++.++++++++.+++++|.+.+. +||+|+
T Consensus 75 --------------~~~------------------~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~ 120 (157)
T 2emq_A 75 --------------IEF------------------ERLETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVEND 120 (157)
T ss_dssp --------------BCG------------------GGGGTCBGGGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECS
T ss_pred --------------cch------------------HHhcCCcHHHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcC
Confidence 000 0001245788999999999999999999999999987 999997
Q ss_pred cccCCCCcEEEEEehhhchhhHhhhhCC
Q 003966 745 YEAAGVSPVVGILTRQDLRAFNILTAFP 772 (783)
Q Consensus 745 ~~~~~~~~vvGIITr~DLl~~~~~~~~~ 772 (783)
+|+++|+||++|+++++......
T Consensus 121 -----~g~~~Giit~~dil~~~~~~~~~ 143 (157)
T 2emq_A 121 -----DGYFAGIFTRREVLKQLNKQLHR 143 (157)
T ss_dssp -----SSSEEEEEEHHHHHHHHHHTTCC
T ss_pred -----CCeEEEEEEHHHHHHHHHHHhhc
Confidence 78999999999999988766543
No 34
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=99.58 E-value=4e-15 Score=143.97 Aligned_cols=133 Identities=16% Similarity=0.251 Sum_probs=109.0
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhh
Q 003966 587 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQE 666 (783)
Q Consensus 587 ~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~ 666 (783)
..++|+|+|.+ +++++++++++.++++.|.+++++.+||+|++ ++++|+|+++|++..+........
T Consensus 3 ~~~~v~dim~~--~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-----------~~lvGivt~~dl~~~~~~~~~~~~ 69 (160)
T 2o16_A 3 LMIKVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDAN-----------KKLLGIVSQRDLLAAQESSLQRSA 69 (160)
T ss_dssp CCCBGGGTSEE--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-----------CBEEEEEEHHHHHHHHHHHCC---
T ss_pred CcCcHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CcEEEEEeHHHHHHHHHHhhcccc
Confidence 46789999998 89999999999999999999999999999976 899999999999876543110000
Q ss_pred hccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccc
Q 003966 667 KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE 746 (783)
Q Consensus 667 ~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~ 746 (783)
. ..+......+.++|++++.++.+++++.+++++|.+.+.+++||+|
T Consensus 70 ~------------------------------~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--- 116 (160)
T 2o16_A 70 Q------------------------------GDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA--- 116 (160)
T ss_dssp ------------------------------------CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE---
T ss_pred c------------------------------ccchhcccCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEE---
Confidence 0 0000112456788999999999999999999999999999999998
Q ss_pred cCCCCcEEEEEehhhchhhHhh
Q 003966 747 AAGVSPVVGILTRQDLRAFNIL 768 (783)
Q Consensus 747 ~~~~~~vvGIITr~DLl~~~~~ 768 (783)
+|+++|+||++|+++...+
T Consensus 117 ---~g~lvGiit~~dil~~~~~ 135 (160)
T 2o16_A 117 ---KDVLVGIITDSDFVTIAIN 135 (160)
T ss_dssp ---TTEEEEEECHHHHHHHHHH
T ss_pred ---CCEEEEEEEHHHHHHHHHH
Confidence 4789999999999987654
No 35
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=99.58 E-value=9.1e-15 Score=136.81 Aligned_cols=124 Identities=17% Similarity=0.156 Sum_probs=104.7
Q ss_pred cccccccc---cCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhh
Q 003966 589 LTVGELID---AKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 665 (783)
Q Consensus 589 l~v~dvM~---~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~ 665 (783)
++++|+|. + +++++++++++.++++.|.+++++.+||+| + ++++|+|+++|++..+..+...
T Consensus 6 ~~v~~im~~~~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-----------~~~~Givt~~dl~~~~~~~~~~- 70 (135)
T 2rc3_A 6 KTVKHLLQEKGH--TVVAIGPDDSVFNAMQKMAADNIGALLVMK-D-----------EKLVGILTERDFSRKSYLLDKP- 70 (135)
T ss_dssp CBHHHHHHHHCC--CCCEECTTSBHHHHHHHHHHHTCSEEEEEE-T-----------TEEEEEEEHHHHHHHGGGSSSC-
T ss_pred eeHHHHHhcCCC--CcEEECCCCcHHHHHHHHHhcCCCEEEEEE-C-----------CEEEEEEehHHHHHHHHHcCCC-
Confidence 38999999 7 899999999999999999999999999998 5 8999999999997522111000
Q ss_pred hhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeecc
Q 003966 666 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 745 (783)
Q Consensus 666 ~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~ 745 (783)
.....+.++|++++.++++++++.+++++|.+.+.+++||+|
T Consensus 71 ------------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-- 112 (135)
T 2rc3_A 71 ------------------------------------VKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-- 112 (135)
T ss_dssp ------------------------------------GGGSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE--
T ss_pred ------------------------------------cccCCHHHhccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe--
Confidence 012357788999999999999999999999999999999998
Q ss_pred ccCCCCcEEEEEehhhchhhHhhh
Q 003966 746 EAAGVSPVVGILTRQDLRAFNILT 769 (783)
Q Consensus 746 ~~~~~~~vvGIITr~DLl~~~~~~ 769 (783)
+|+++|+||++|++++..++
T Consensus 113 ----~g~~~Giit~~dll~~~~~~ 132 (135)
T 2rc3_A 113 ----DGKVIGLLSIGDLVKDAISQ 132 (135)
T ss_dssp ----TTEEEEEEEHHHHHHHHHC-
T ss_pred ----CCEEEEEEEHHHHHHHHHhc
Confidence 47899999999999977643
No 36
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=99.57 E-value=8.6e-15 Score=138.09 Aligned_cols=129 Identities=16% Similarity=0.276 Sum_probs=104.4
Q ss_pred ccccccccc---ccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhc
Q 003966 585 WMRTLTVGE---LIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKK 661 (783)
Q Consensus 585 ~l~~l~v~d---vM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~ 661 (783)
.+.+.+++| +|.+ +++++++++++.++++.|.+++++.+||+|++ ++++|+|+++|++..+.+.
T Consensus 4 ~~~~~~v~~~~~~~~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----------~~~~Givt~~dl~~~~~~~ 70 (144)
T 2nyc_A 4 HFLKIPIGDLNIITQD--NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN-----------GYLINVYEAYDVLGLIKGG 70 (144)
T ss_dssp GGGGSBGGGSSCCBCS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-----------CBEEEEEEHHHHHHHHHTC
T ss_pred chhhcchhhcCCCCCC--CceEECCCCcHHHHHHHHHHcCcceeeEEcCC-----------CcEEEEEcHHHHHHHhccc
Confidence 344567888 8887 89999999999999999999999999999976 8999999999998765432
Q ss_pred hhhhhhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccC------CCeeecCCCCHHHHHHHHHHcC
Q 003966 662 WFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT------TPYTVIESMSVAKAMVLFRQVG 735 (783)
Q Consensus 662 ~f~~~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~------~p~tV~~~~sL~~a~~lf~~~g 735 (783)
.+.. ....++++|++ ++.++++++++.+++++|.+.+
T Consensus 71 ~~~~-------------------------------------~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~ 113 (144)
T 2nyc_A 71 IYND-------------------------------------LSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKAR 113 (144)
T ss_dssp -----------------------------------------CCSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHT
T ss_pred cccc-------------------------------------CCccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCC
Confidence 1000 01234445544 5789999999999999999999
Q ss_pred CCEEEEeeccccCCCCcEEEEEehhhchhhHhh
Q 003966 736 LRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 768 (783)
Q Consensus 736 lr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~~ 768 (783)
.+++||+|+ +|+++|+||++|++++...
T Consensus 114 ~~~l~Vvd~-----~g~~~Giit~~dil~~l~~ 141 (144)
T 2nyc_A 114 VHRFFVVDD-----VGRLVGVLTLSDILKYILL 141 (144)
T ss_dssp CSEEEEECT-----TSBEEEEEEHHHHHHHHHH
T ss_pred CCEEEEECC-----CCCEEEEEEHHHHHHHHHh
Confidence 999999997 7899999999999997754
No 37
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=99.57 E-value=9.5e-15 Score=144.19 Aligned_cols=158 Identities=21% Similarity=0.368 Sum_probs=112.9
Q ss_pred CcccccccccccccCCC--eeEE--cCcccHHHHHHHHhcCCCCeeeee--cCCCCCCCCCCCCCCeEEEEEeHHHHHHH
Q 003966 584 PWMRTLTVGELIDAKPP--VITL--SGIEKVSQIVDVLRNTTHNGFPVL--DEGVVPPSGLANVATELHGLILRAHLVLA 657 (783)
Q Consensus 584 ~~l~~l~v~dvM~~~~~--vv~l--~~~~~v~~~~~~L~~t~~~~fPVV--d~~~~~~~~~~~~~~~l~GiI~r~dLl~l 657 (783)
..++..+|+|+|.+..+ ++++ ++++++.++.+.|.+++++.+||+ |++ ++++|+|+++|++..
T Consensus 6 ~~~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~-----------~~lvGiit~~dl~~~ 74 (185)
T 2j9l_A 6 EFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRES-----------QRLVGFVLRRDLIIS 74 (185)
T ss_dssp ---CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTT-----------CBEEEEEEHHHHHHH
T ss_pred hhhccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCC-----------CeEEEEEEHHHHHHH
Confidence 45678999999998211 7788 999999999999999999999999 554 899999999999887
Q ss_pred HHhchhhhhhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCC
Q 003966 658 LKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLR 737 (783)
Q Consensus 658 L~~~~f~~~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr 737 (783)
+.......... .+ . +...+.+ ...+. ........+++++|++++.+|++++++.+++++|.+.+.+
T Consensus 75 ~~~~~~~~~~~-~~-----~--~~~~~~~---~~~~~---~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~ 140 (185)
T 2j9l_A 75 IENARKKQDGV-VS-----T--SIIYFTE---HSPPL---PPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLR 140 (185)
T ss_dssp HHHHHTSCSCC-CT-----T--CEEECSS---SCCCC---CTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCS
T ss_pred HHhhcccCCCc-cc-----c--ceeeccc---CCccc---ccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCc
Confidence 65321000000 00 0 0000000 00000 0001123568899999999999999999999999999999
Q ss_pred EEEEeeccccCCCCcEEEEEehhhchhhHhhhhCC
Q 003966 738 HLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFP 772 (783)
Q Consensus 738 ~lpVVd~~~~~~~~~vvGIITr~DLl~~~~~~~~~ 772 (783)
++||+| +|+++|+||++|+++...+....
T Consensus 141 ~l~Vvd------~g~~vGiit~~dll~~l~~~~~~ 169 (185)
T 2j9l_A 141 QCLVTH------NGRLLGIITKKDVLKHIAQMANQ 169 (185)
T ss_dssp EEEEEE------TTEEEEEEEHHHHHHHHHHHCC-
T ss_pred EEEEEE------CCEEEEEEEHHHHHHHHHHhhcc
Confidence 999998 58999999999999987765543
No 38
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=99.57 E-value=8.9e-15 Score=147.87 Aligned_cols=127 Identities=16% Similarity=0.167 Sum_probs=108.5
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcC---CCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchh
Q 003966 587 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNT---THNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWF 663 (783)
Q Consensus 587 ~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t---~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f 663 (783)
...+|+++|++ ++++++++.++.++++.|++. +++.+||+|++ ++++|+|+.+||+.. .
T Consensus 52 ~~~~v~~iM~~--~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~-----------~~lvGivt~~dll~~---~-- 113 (205)
T 3kxr_A 52 SENEIGRYTDH--QMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEA-----------DKYLGTVRRYDIFKH---E-- 113 (205)
T ss_dssp CTTCGGGGCBC--CCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTT-----------CBEEEEEEHHHHTTS---C--
T ss_pred CcchHHhhccC--ceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCC-----------CeEEEEEEHHHHHhC---C--
Confidence 45689999999 999999999999999999986 67899999986 899999999998421 0
Q ss_pred hhhhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEee
Q 003966 664 LQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVP 743 (783)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd 743 (783)
....++++|++++++|++++++.++.++|++.+++++||||
T Consensus 114 ---------------------------------------~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD 154 (205)
T 3kxr_A 114 ---------------------------------------PHEPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVID 154 (205)
T ss_dssp ---------------------------------------TTSBGGGGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEEC
T ss_pred ---------------------------------------CcchHHHHhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEc
Confidence 01347888999999999999999999999999999999999
Q ss_pred ccccCCCCcEEEEEehhhchhhHhhhhCCccc
Q 003966 744 KYEAAGVSPVVGILTRQDLRAFNILTAFPHLE 775 (783)
Q Consensus 744 ~~~~~~~~~vvGIITr~DLl~~~~~~~~~~l~ 775 (783)
+ +|+++||||++|+++....+....+.
T Consensus 155 ~-----~g~lvGiIT~~Dil~~i~~e~~ed~~ 181 (205)
T 3kxr_A 155 D-----AGELIGRVTLRAATALVREHYEAQLM 181 (205)
T ss_dssp T-----TSBEEEEEEHHHHHHHHHHHHC----
T ss_pred C-----CCeEEEEEEHHHHHHHHHHHHHHHHH
Confidence 8 89999999999999988776655443
No 39
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=99.57 E-value=3.2e-15 Score=139.48 Aligned_cols=126 Identities=17% Similarity=0.282 Sum_probs=104.0
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHH-HHHhchhh
Q 003966 586 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL-ALKKKWFL 664 (783)
Q Consensus 586 l~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~-lL~~~~f~ 664 (783)
++.++++|+|.+ ++.++++++++.++.+.|.+++++.+||+|++ ++++|+|+++|++. .+.+...
T Consensus 5 ~~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----------~~~~Givt~~dl~~~~~~~~~~- 70 (133)
T 1y5h_A 5 FTMTTARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDD-----------DRLHGMLTDRDIVIKGLAAGLD- 70 (133)
T ss_dssp ---CCHHHHSEE--TCCCEETTSBHHHHHHHHHHHTCSEEEEECGG-----------GBEEEEEEHHHHHHTTGGGTCC-
T ss_pred hhhcCHHHHhcC--CceEeCCCCCHHHHHHHHHHhCCCeEEEECCC-----------CeEEEEEeHHHHHHHHHhcCCC-
Confidence 455799999998 89999999999999999999999999999876 89999999999963 3221100
Q ss_pred hhhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeec
Q 003966 665 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK 744 (783)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~ 744 (783)
.....++++|++++.++++++++.+++++|.+.+.+++||+|
T Consensus 71 -------------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd- 112 (133)
T 1y5h_A 71 -------------------------------------PNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS- 112 (133)
T ss_dssp -------------------------------------TTTSBHHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEE-
T ss_pred -------------------------------------ccccCHHHHhcCCCEEECCCCCHHHHHHHHHHcCCCEEEEEE-
Confidence 001346677888999999999999999999999999999998
Q ss_pred cccCCCCcEEEEEehhhchhhHhh
Q 003966 745 YEAAGVSPVVGILTRQDLRAFNIL 768 (783)
Q Consensus 745 ~~~~~~~~vvGIITr~DLl~~~~~ 768 (783)
+|+++|+||++|++++...
T Consensus 113 -----~g~~~Giit~~dil~~l~~ 131 (133)
T 1y5h_A 113 -----EHRLVGIVTEADIARHLPE 131 (133)
T ss_dssp -----TTEEEEEEEHHHHHHTCC-
T ss_pred -----CCEEEEEEEHHHHHHHHHh
Confidence 3789999999999986543
No 40
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=99.57 E-value=1.3e-14 Score=140.28 Aligned_cols=135 Identities=19% Similarity=0.274 Sum_probs=106.3
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhh
Q 003966 586 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 665 (783)
Q Consensus 586 l~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~ 665 (783)
...++++|+|.+ +++++++++++.++.+.|.+++++.+||+|++ ++++++|+|+++|++..+.......
T Consensus 10 ~~~~~v~dim~~--~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~---------~~~~~~Givt~~dl~~~~~~~~~~~ 78 (164)
T 2pfi_A 10 SHHVRVEHFMNH--SITTLAKDTPLEEVVKVVTSTDVTEYPLVEST---------ESQILVGIVQRAQLVQALQAEPPSR 78 (164)
T ss_dssp CCSCBHHHHCBC--CCCCEETTCBHHHHHHHHHTCCCSEEEEESCT---------TTCBEEEEEEHHHHHHHHHC-----
T ss_pred ccCCCHHHHcCC--CCeEECCCCcHHHHHHHHHhCCCCceeEEecC---------CCCEEEEEEEHHHHHHHHHhhcccc
Confidence 457899999999 89999999999999999999999999999861 1189999999999987664321000
Q ss_pred hhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCC------CeeecCCCCHHHHHHHHHHcCCCEE
Q 003966 666 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTT------PYTVIESMSVAKAMVLFRQVGLRHL 739 (783)
Q Consensus 666 ~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~------p~tV~~~~sL~~a~~lf~~~glr~l 739 (783)
.+ ... ..+.++|+++ +.++.+++++.+++++|.+.+.+++
T Consensus 79 ~~--------~~~--------------------------~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l 124 (164)
T 2pfi_A 79 AP--------GHQ--------------------------QCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSL 124 (164)
T ss_dssp ----------CCC--------------------------CBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEE
T ss_pred CC--------ccc--------------------------chhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEE
Confidence 00 000 1123334333 7899999999999999999999999
Q ss_pred EEeeccccCCCCcEEEEEehhhchhhHhhhhC
Q 003966 740 LVVPKYEAAGVSPVVGILTRQDLRAFNILTAF 771 (783)
Q Consensus 740 pVVd~~~~~~~~~vvGIITr~DLl~~~~~~~~ 771 (783)
||+| +|+++|+||++|+++...+...
T Consensus 125 pVvd------~g~l~Giit~~dil~~~~~~~~ 150 (164)
T 2pfi_A 125 FVTS------RGRAVGCVSWVEMKKAISNLTN 150 (164)
T ss_dssp EEEE------TTEEEEEEEHHHHHHHHHHHHS
T ss_pred EEEE------CCEEEEEEEHHHHHHHHHhhhC
Confidence 9998 4789999999999998876553
No 41
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=99.57 E-value=1.1e-14 Score=139.37 Aligned_cols=128 Identities=13% Similarity=0.181 Sum_probs=106.8
Q ss_pred CCcccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhch
Q 003966 583 EPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKW 662 (783)
Q Consensus 583 ~~~l~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~ 662 (783)
...+++++++|+ + +++++++++++.++.+.|.+++++.+||+|++ ++++|+|+++|++..+.+..
T Consensus 17 ~~~l~~~~v~~~--~--~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~-----------~~~vGivt~~dl~~~~~~~~ 81 (152)
T 2uv4_A 17 SKSLEELQIGTY--A--NIAMVRTTTPVYVALGIFVQHRVSALPVVDEK-----------GRVVDIYSKFDVINLAAEKT 81 (152)
T ss_dssp TSBHHHHTCSBC--S--SCCCEETTCBHHHHHHHHHHHCCSEEEEECTT-----------SBEEEEEEHHHHHHHHHCSS
T ss_pred HhhHHHccCCcc--C--CceEeCCCCcHHHHHHHHHHcCCceEeEECCC-----------CcEEEEEeHHHHHHHhcchh
Confidence 345788899998 6 78899999999999999999999999999976 89999999999987654321
Q ss_pred hhhhhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCcccccc------CCCeeecCCCCHHHHHHHHHHcCC
Q 003966 663 FLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTN------TTPYTVIESMSVAKAMVLFRQVGL 736 (783)
Q Consensus 663 f~~~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~------~~p~tV~~~~sL~~a~~lf~~~gl 736 (783)
+.. ....+.++|+ +++.++.+++++.+++++|.+.+.
T Consensus 82 ~~~-------------------------------------~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~ 124 (152)
T 2uv4_A 82 YNN-------------------------------------LDVSVTKALQHRSHYFEGVLKCYLHETLETIINRLVEAEV 124 (152)
T ss_dssp CCC-------------------------------------TTSBGGGGGGTCCHHHHTCSEECTTSBHHHHHHHHHHHTC
T ss_pred hhh-------------------------------------hcchHHHHHhhhhcccCCCeEECCCCcHHHHHHHHHHcCC
Confidence 000 0012445554 788999999999999999999999
Q ss_pred CEEEEeeccccCCCCcEEEEEehhhchhhHh
Q 003966 737 RHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 767 (783)
Q Consensus 737 r~lpVVd~~~~~~~~~vvGIITr~DLl~~~~ 767 (783)
+++||+|+ +|+++|+||++|+++...
T Consensus 125 ~~lpVvd~-----~g~~vGiit~~dil~~l~ 150 (152)
T 2uv4_A 125 HRLVVVDE-----NDVVKGIVSLSDILQALV 150 (152)
T ss_dssp SEEEEECT-----TSBEEEEEEHHHHHHHHC
T ss_pred eEEEEECC-----CCeEEEEEEHHHHHHHHH
Confidence 99999997 789999999999998764
No 42
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=99.56 E-value=1.8e-14 Score=142.69 Aligned_cols=126 Identities=18% Similarity=0.212 Sum_probs=108.7
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhh
Q 003966 588 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK 667 (783)
Q Consensus 588 ~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~ 667 (783)
.++++|+|.+ +++++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|++..+..+. .
T Consensus 8 ~~~v~~im~~--~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~-----------g~~vGivt~~dl~~~~~~~~----~ 70 (184)
T 1pvm_A 8 FMRVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN-----------GNDVGLLSERSIIKRFIPRN----K 70 (184)
T ss_dssp CCBGGGTSBT--TCCEEETTCBHHHHHHHHHHHTCCEEEEECTT-----------SCEEEEEEHHHHHHHTGGGC----C
T ss_pred ccCHHHhcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CcEEEEEeHHHHHHHHhhcc----c
Confidence 3799999998 99999999999999999999999999999876 89999999999976543210 0
Q ss_pred ccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeecccc
Q 003966 668 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA 747 (783)
Q Consensus 668 ~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~ 747 (783)
......++++|++++.++++++++.+++++|.+.+.+++||+|+
T Consensus 71 ---------------------------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--- 114 (184)
T 1pvm_A 71 ---------------------------------KPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDD--- 114 (184)
T ss_dssp ---------------------------------CGGGSBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECT---
T ss_pred ---------------------------------CcccCCHHHHhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEcC---
Confidence 00123578889999999999999999999999999999999997
Q ss_pred CCCCcEEEEEehhhchhhHhh
Q 003966 748 AGVSPVVGILTRQDLRAFNIL 768 (783)
Q Consensus 748 ~~~~~vvGIITr~DLl~~~~~ 768 (783)
+|+++|+||++|++++...
T Consensus 115 --~g~~~Givt~~dll~~~~~ 133 (184)
T 1pvm_A 115 --PGRVVGIVTLTDLSRYLSR 133 (184)
T ss_dssp --TCCEEEEEEHHHHTTTSCH
T ss_pred --CCeEEEEEEHHHHHHHHHh
Confidence 7899999999999987655
No 43
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=99.55 E-value=8.1e-15 Score=141.39 Aligned_cols=135 Identities=19% Similarity=0.118 Sum_probs=110.3
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhch-hh
Q 003966 586 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKW-FL 664 (783)
Q Consensus 586 l~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~-f~ 664 (783)
+..++++|+|.++.+++++++++++.++++.|.+++++.+||+|++ ++++|+|+++|++..+.+.. +.
T Consensus 11 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~-----------~~lvGivt~~dl~~~~~~~~~~~ 79 (159)
T 1yav_A 11 LLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS-----------YRLHGLIGTNMIMNSIFGLERIE 79 (159)
T ss_dssp CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTT-----------CBEEEEEEHHHHHHHHBCSSSBC
T ss_pred HhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCC-----------CCEEEEeEHHHHHHHhhhhcccc
Confidence 5578999999764468899999999999999999999999999986 79999999999987654311 00
Q ss_pred hhhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeec
Q 003966 665 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK 744 (783)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~ 744 (783)
. +......++++|++++.++.+++++.+++++|.+.+. +||+|+
T Consensus 80 ~----------------------------------~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~ 123 (159)
T 1yav_A 80 F----------------------------------EKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVEND 123 (159)
T ss_dssp G----------------------------------GGTTTSBHHHHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECT
T ss_pred h----------------------------------hhhccCCHHHhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeC
Confidence 0 0001235678898999999999999999999999977 999997
Q ss_pred cccCCCCcEEEEEehhhchhhHhhhhCC
Q 003966 745 YEAAGVSPVVGILTRQDLRAFNILTAFP 772 (783)
Q Consensus 745 ~~~~~~~~vvGIITr~DLl~~~~~~~~~ 772 (783)
+|+++|+||++|+++...++...
T Consensus 124 -----~g~~vGiit~~dil~~~~~~~~~ 146 (159)
T 1yav_A 124 -----EQVFEGIFTRRVVLKELNKHIRS 146 (159)
T ss_dssp -----TCBEEEEEEHHHHHHHHHHHC--
T ss_pred -----CCeEEEEEEHHHHHHHHHHHHHh
Confidence 78999999999999988766544
No 44
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=99.54 E-value=2e-14 Score=138.20 Aligned_cols=129 Identities=18% Similarity=0.226 Sum_probs=107.4
Q ss_pred cccccccccC----CCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhh
Q 003966 589 LTVGELIDAK----PPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL 664 (783)
Q Consensus 589 l~v~dvM~~~----~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~ 664 (783)
.+|+|+|.++ .+++++++++++.++++.|.+++++.+||+| + ++++|+|+.+|+++.+......
T Consensus 7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~-----------~~~~Givt~~dl~~~~~~~~~~ 74 (157)
T 4fry_A 7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-G-----------DDIAGIVTERDYARKVVLQERS 74 (157)
T ss_dssp CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES-S-----------SSEEEEEEHHHHHHHSGGGTCC
T ss_pred HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee-C-----------CEEEEEEEHHHHHHHHHhccCC
Confidence 5799999952 2679999999999999999999999999965 4 7999999999997754321100
Q ss_pred hhhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeec
Q 003966 665 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK 744 (783)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~ 744 (783)
.....++++|++++.++.+++++.+++++|.+.+.+++||+|
T Consensus 75 -------------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd- 116 (157)
T 4fry_A 75 -------------------------------------SKATRVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD- 116 (157)
T ss_dssp -------------------------------------SSSCBHHHHSBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-
T ss_pred -------------------------------------ccccCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE-
Confidence 011346778889999999999999999999999999999998
Q ss_pred cccCCCCcEEEEEehhhchhhHhhhhCC
Q 003966 745 YEAAGVSPVVGILTRQDLRAFNILTAFP 772 (783)
Q Consensus 745 ~~~~~~~~vvGIITr~DLl~~~~~~~~~ 772 (783)
+|+++|+||++|+++++..+...
T Consensus 117 -----~g~~~Giit~~dil~~l~~~~~~ 139 (157)
T 4fry_A 117 -----GGKLIGLISIGDLVKSVIADQQF 139 (157)
T ss_dssp -----TTEEEEEEEHHHHHHHHHTTCCC
T ss_pred -----CCEEEEEEEHHHHHHHHHHHHHh
Confidence 47999999999999988766543
No 45
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=99.52 E-value=4.4e-14 Score=146.49 Aligned_cols=162 Identities=15% Similarity=0.168 Sum_probs=108.8
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhh
Q 003966 588 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK 667 (783)
Q Consensus 588 ~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~ 667 (783)
..+++|+|.+ +++++++++++.++++.|.+++++.+||+|++ ++++|+|+..|+++.+....-....
T Consensus 6 ~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~-----------~~l~Giit~~di~~~~~~~~~~~~~ 72 (245)
T 3l2b_A 6 KLKVEDLEMD--KIAPLAPEVSLKMAWNIMRDKNLKSIPVADGN-----------NHLLGMLSTSNITATYMDIWDSNIL 72 (245)
T ss_dssp CCBGGGSCCB--CCCCBCTTCBHHHHHHHHHHTTCSEEEEECTT-----------CBEEEEEEHHHHHHHHHCCCCTTHH
T ss_pred cCcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CEEEEEEEHHHHHHHHHHhhhhhhh
Confidence 4689999998 89999999999999999999999999999986 8999999999999877542100000
Q ss_pred --ccchhHHHhhhh-----------------------hhHHHhh------------------------------------
Q 003966 668 --RRTEEWEVREKF-----------------------SWVELAE------------------------------------ 686 (783)
Q Consensus 668 --~~~~~~~~~~~~-----------------------~~~d~~~------------------------------------ 686 (783)
......++.+.+ ....+.+
T Consensus 73 ~~~~~~~~~v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgdr~~~~~~~i~~~~~~liit~~~~~ 152 (245)
T 3l2b_A 73 AKSATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTP 152 (245)
T ss_dssp HHTTCCHHHHHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECSCHHHHHHHHHTTCSEEEECTTCCC
T ss_pred hhccCCHHHHHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECCCHHHHHHHHHcCCCEEEECCCCCC
Confidence 000000000000 0000000
Q ss_pred ---------hcC-----CccccccChhhhhhccCcccccc-CCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCC
Q 003966 687 ---------REG-----KIEEVAVTSEEMEMYIDLHPLTN-TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVS 751 (783)
Q Consensus 687 ---------~~~-----~i~di~~~~~~~~~~~dl~~im~-~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~ 751 (783)
... +-.|..-..........++++|+ +++.++++++++.++.++|.+.+++++||+|+ +|
T Consensus 153 ~~~v~~~a~~~~~~~i~t~~d~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~-----~~ 227 (245)
T 3l2b_A 153 SKEIIELAKKNNITVITTPHDSFTASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDE-----NN 227 (245)
T ss_dssp CHHHHHHHHHHTCEEEECSSCHHHHHHHGGGGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECT-----TC
T ss_pred CHHHHHHHHHcCCeEEEeCCChHHHHHHHhcCCceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcC-----CC
Confidence 000 00000000111234567889999 89999999999999999999999999999998 79
Q ss_pred cEEEEEehhhchhhHh
Q 003966 752 PVVGILTRQDLRAFNI 767 (783)
Q Consensus 752 ~vvGIITr~DLl~~~~ 767 (783)
+++|+||++|++++..
T Consensus 228 ~~~Giit~~dll~~~~ 243 (245)
T 3l2b_A 228 KVVGSIARFHLISTHK 243 (245)
T ss_dssp BEEEEEECC-------
T ss_pred eEEEEEEHHHhhchhh
Confidence 9999999999998653
No 46
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=99.49 E-value=7.7e-14 Score=160.94 Aligned_cols=155 Identities=14% Similarity=0.154 Sum_probs=124.3
Q ss_pred CccHHHHHHHhcCCCCCCCCCCCcccccccccccccCCCeeEEcCc-ccHHHHHHHHhcCCCCeeeeec-CCCCCCCCCC
Q 003966 562 NPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLSGI-EKVSQIVDVLRNTTHNGFPVLD-EGVVPPSGLA 639 (783)
Q Consensus 562 ~~~iy~~~l~~kg~p~l~~~~~~~l~~l~v~dvM~~~~~vv~l~~~-~~v~~~~~~L~~t~~~~fPVVd-~~~~~~~~~~ 639 (783)
....++.++..+++........+.+.+.+|+|+|++ ++++++++ +++.++++.|++++++.+||+| ++
T Consensus 357 s~~~~~~~l~~rg~~~~~~~~~~~l~~~~V~diM~~--~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~-------- 426 (527)
T 3pc3_A 357 TKFVSDNWMEARNFKEPVNEHGHWWWSLAIAELELP--APPVILKSDATVGEAIALMKKHRVDQLPVVDQDD-------- 426 (527)
T ss_dssp TTTTSHHHHHHTTSSCCCCTTCCTTTTSBGGGGCCC--CCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTT--------
T ss_pred hhhhcHHHHHhcCCccccccccccccCCcHHHhCcC--CCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCC--------
Confidence 444456777888876554445566889999999998 99999999 9999999999999999999999 54
Q ss_pred CCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeec
Q 003966 640 NVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVI 719 (783)
Q Consensus 640 ~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~ 719 (783)
++++|+|+++||++.+.+... .....+.++|++++++|+
T Consensus 427 ---g~lvGiVt~~Dll~~l~~~~~--------------------------------------~~~~~V~~im~~~~~~v~ 465 (527)
T 3pc3_A 427 ---GSVLGVVGQETLITQIVSMNR--------------------------------------QQSDPAIKALNKRVIRLN 465 (527)
T ss_dssp ---CCEEEEEEHHHHHHHHHHHCC--------------------------------------CTTSBGGGGEETTCCEEE
T ss_pred ---CEEEEEEEHHHHHHHHHhccC--------------------------------------cCCCcHHHHhcCCCeEEC
Confidence 899999999999876543110 011357889999999999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHhhhh
Q 003966 720 ESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTA 770 (783)
Q Consensus 720 ~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~~~~ 770 (783)
+++++.++.++|.+.+. +||||++ ..++++++||||++||++++.++.
T Consensus 466 ~~~~l~~a~~~m~~~~~--~pVVd~~-~~~~g~lvGIVT~~Dll~~l~~~~ 513 (527)
T 3pc3_A 466 ESEILGKLARVLEVDPS--VLILGKN-PAGKVELKALATKLDVTTFIAAGK 513 (527)
T ss_dssp TTSBHHHHHHHHTTCSE--EEEEEEC-SSSCEEEEEEEEHHHHHHHHHTCC
T ss_pred CCCcHHHHHHHHhhCCE--EEEEeCC-cccCCeEEEEEEHHHHHHHHHhcc
Confidence 99999999999987765 7999860 011289999999999999887654
No 47
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.48 E-value=8.8e-14 Score=141.35 Aligned_cols=119 Identities=16% Similarity=0.150 Sum_probs=104.8
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhh
Q 003966 588 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK 667 (783)
Q Consensus 588 ~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~ 667 (783)
..+++++|.+ +++++++++++.++.+.|.+++++++||+|++ ++++|+|+.+|+...+.
T Consensus 12 ~~~~~~~~~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~-----------~~l~Givt~~dl~~~~~-------- 70 (213)
T 1vr9_A 12 HMKVKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDRE-----------GHFRGVVNKEDLLDLDL-------- 70 (213)
T ss_dssp -CBGGGGCBS--CSCEEETTCBHHHHHHHHHHTTSSEEEEECTT-----------SBEEEEEEGGGGTTSCT--------
T ss_pred ccCHHHhhcC--CCeEECCCCcHHHHHHHHHHCCCCEEEEEcCC-----------CEEEEEEEHHHHHhhcC--------
Confidence 3578999999 99999999999999999999999999999976 89999999998843110
Q ss_pred ccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeecccc
Q 003966 668 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA 747 (783)
Q Consensus 668 ~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~ 747 (783)
...++++|++++.++++++++.++.++|.+.+.+++||+|+
T Consensus 71 ------------------------------------~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--- 111 (213)
T 1vr9_A 71 ------------------------------------DSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDE--- 111 (213)
T ss_dssp ------------------------------------TSBSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECT---
T ss_pred ------------------------------------CCcHHHHccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcC---
Confidence 02467889999999999999999999999999999999997
Q ss_pred CCCCcEEEEEehhhchhhHhh
Q 003966 748 AGVSPVVGILTRQDLRAFNIL 768 (783)
Q Consensus 748 ~~~~~vvGIITr~DLl~~~~~ 768 (783)
+|+++|+||++|+++....
T Consensus 112 --~g~lvGiit~~Dil~~~~~ 130 (213)
T 1vr9_A 112 --EMRLKGAVSLHDFLEALIE 130 (213)
T ss_dssp --TCBEEEEEEHHHHHHHHHH
T ss_pred --CCEEEEEEEHHHHHHHHHH
Confidence 7899999999999987654
No 48
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=99.48 E-value=8.2e-14 Score=148.26 Aligned_cols=134 Identities=19% Similarity=0.186 Sum_probs=112.9
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhh
Q 003966 588 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK 667 (783)
Q Consensus 588 ~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~ 667 (783)
..+++++|.+ ++.++++++++.++.+.|.+++++.+||+|++ ++++|+|+++|++..+.+.. ..
T Consensus 155 ~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~-----------~~~~Givt~~dl~~~~~~~~-~~-- 218 (296)
T 3ddj_A 155 IFPVKVFMST--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDD-----------NKVVGIVTVVNAIKQLAKAV-DK-- 218 (296)
T ss_dssp CCBHHHHSBC--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-----------SCEEEEEEHHHHHHHHHHHH-HH--
T ss_pred cccHHHhhcC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----------CEEEEEEEHHHHHHHHHHHH-hh--
Confidence 4589999998 89999999999999999999999999999976 89999999999988765311 00
Q ss_pred ccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeecccc
Q 003966 668 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA 747 (783)
Q Consensus 668 ~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~ 747 (783)
+.. +......+.++|+++++++.+++++.++.++|.+.+.+++||+|+
T Consensus 219 -----------~~~------------------~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~--- 266 (296)
T 3ddj_A 219 -----------LDP------------------DYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNK--- 266 (296)
T ss_dssp -----------TCT------------------HHHHTCBHHHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECT---
T ss_pred -----------cCh------------------hhhcCcCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEECC---
Confidence 000 001124577889999999999999999999999999999999997
Q ss_pred CCCCcEEEEEehhhchhhHhhhhC
Q 003966 748 AGVSPVVGILTRQDLRAFNILTAF 771 (783)
Q Consensus 748 ~~~~~vvGIITr~DLl~~~~~~~~ 771 (783)
+|+++|+||++|++++...+..
T Consensus 267 --~g~~~Giit~~Dil~~l~~~~~ 288 (296)
T 3ddj_A 267 --DNTIRGIITERDLLIALHHILV 288 (296)
T ss_dssp --TSCEEEEEEHHHHHHHHHHHHH
T ss_pred --CCeEEEEEcHHHHHHHHHHHhc
Confidence 7899999999999998877654
No 49
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=99.46 E-value=8.9e-14 Score=147.86 Aligned_cols=125 Identities=18% Similarity=0.143 Sum_probs=108.3
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcC-----CCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhc
Q 003966 587 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNT-----THNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKK 661 (783)
Q Consensus 587 ~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t-----~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~ 661 (783)
...+|+++|++ +++++++++++.++++.|+++ +++.+||+|++ ++++|+|+.+|++...
T Consensus 135 ~~~~v~~iM~~--~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~-----------~~lvGivt~~dll~~~--- 198 (286)
T 2oux_A 135 EDETAGAIMTT--EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQE-----------NHLVGVISLRDLIVND--- 198 (286)
T ss_dssp CTTBHHHHCBS--CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTT-----------CBEEEEEEHHHHTTSC---
T ss_pred ChHHHHHhCCC--CceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCC-----------CeEEEEEEHHHHHcCC---
Confidence 45789999999 999999999999999999987 78889999976 8999999999984310
Q ss_pred hhhhhhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEE
Q 003966 662 WFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLV 741 (783)
Q Consensus 662 ~f~~~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpV 741 (783)
....++++|++++++|++++++.++.++|.+.+++++||
T Consensus 199 -----------------------------------------~~~~v~~im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpV 237 (286)
T 2oux_A 199 -----------------------------------------DDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPV 237 (286)
T ss_dssp -----------------------------------------TTSBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEE
T ss_pred -----------------------------------------CCCcHHHHcCCCCeeecCCCCHHHHHHHHHHcCCcEEEE
Confidence 012467788899999999999999999999999999999
Q ss_pred eeccccCCCCcEEEEEehhhchhhHhhhhCCc
Q 003966 742 VPKYEAAGVSPVVGILTRQDLRAFNILTAFPH 773 (783)
Q Consensus 742 Vd~~~~~~~~~vvGIITr~DLl~~~~~~~~~~ 773 (783)
||+ +|+++|+||++|+++....+....
T Consensus 238 Vd~-----~g~lvGiIT~~Dil~~i~~e~~ed 264 (286)
T 2oux_A 238 TDY-----DDHLLGIVTVDDIIDVIDDEAASD 264 (286)
T ss_dssp ECT-----TCBEEEEEEHHHHHHHHHHHHHC-
T ss_pred EcC-----CCeEEEEEEHHHHHHHHHHHhHHH
Confidence 998 799999999999999877655443
No 50
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=99.45 E-value=2.2e-13 Score=144.21 Aligned_cols=127 Identities=20% Similarity=0.208 Sum_probs=105.2
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcC-----CCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhc
Q 003966 587 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNT-----THNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKK 661 (783)
Q Consensus 587 ~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t-----~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~ 661 (783)
...+++++|++ +++++++++++.++++.++++ +++.+||+|++ ++++|+|+.+|++.. .
T Consensus 133 ~~~~v~~iM~~--~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~-----------~~lvGivt~~dll~~---~ 196 (278)
T 2yvy_A 133 EEDEAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-----------GRLKGVLSLRDLIVA---D 196 (278)
T ss_dssp CTTBGGGTCBS--CCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTT-----------CBEEEEEEHHHHHHS---C
T ss_pred CcchHHhhcCC--CceEECCCCcHHHHHHHHHHccCCccceeEEEEECCC-----------CCEEEEEEHHHHhcC---C
Confidence 35689999999 999999999999999999986 67899999976 899999999998541 0
Q ss_pred hhhhhhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEE
Q 003966 662 WFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLV 741 (783)
Q Consensus 662 ~f~~~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpV 741 (783)
....++++|++++++|++++++.+++++|++.+.+++||
T Consensus 197 -----------------------------------------~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpV 235 (278)
T 2yvy_A 197 -----------------------------------------PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPV 235 (278)
T ss_dssp -----------------------------------------TTCBSTTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEE
T ss_pred -----------------------------------------CCCcHHHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEE
Confidence 013578899999999999999999999999999999999
Q ss_pred eeccccCCCCcEEEEEehhhchhhHhhhhCCccc
Q 003966 742 VPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLE 775 (783)
Q Consensus 742 Vd~~~~~~~~~vvGIITr~DLl~~~~~~~~~~l~ 775 (783)
||+ +|+++||||++|+++....+......
T Consensus 236 vd~-----~g~lvGivT~~Dil~~i~~e~~ed~~ 264 (278)
T 2yvy_A 236 VDE-----EGRLVGIVTVDDVLDVLEAEATEDIH 264 (278)
T ss_dssp ECT-----TSBEEEEEEHHHHHHHC---------
T ss_pred EeC-----CCeEEEEEEHHHHHHHHHHHhHHHHH
Confidence 998 79999999999999987766544433
No 51
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=99.45 E-value=2.8e-13 Score=145.95 Aligned_cols=128 Identities=17% Similarity=0.276 Sum_probs=108.2
Q ss_pred cccccccc---cccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchh
Q 003966 587 RTLTVGEL---IDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWF 663 (783)
Q Consensus 587 ~~l~v~dv---M~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f 663 (783)
.+.+++++ |.+ +++++++++++.++.+.|.+++++.+||+|++ ++++|+|+++|++..+....+
T Consensus 185 ~~~~v~~~~~~m~~--~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~-----------~~~~Giit~~dl~~~~~~~~~ 251 (323)
T 3t4n_C 185 LKIPIGDLNIITQD--NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN-----------GYLINVYEAYDVLGLIKGGIY 251 (323)
T ss_dssp CCSBGGGTTCSBCT--TCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-----------CBEEEEEETTHHHHHHHTTHH
T ss_pred hhCcHHHcCCCCCC--CcEEECCCCcHHHHHHHHHHcCCCEEEEECCC-----------CeEEEEEeHHHHHHHHhhchh
Confidence 34578899 888 89999999999999999999999999999986 899999999999887654221
Q ss_pred hhhhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccC------CCeeecCCCCHHHHHHHHHHcCCC
Q 003966 664 LQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT------TPYTVIESMSVAKAMVLFRQVGLR 737 (783)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~------~p~tV~~~~sL~~a~~lf~~~glr 737 (783)
.. ....++++|++ +++++++++++.+++++|.+.+.+
T Consensus 252 ~~-------------------------------------~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~ 294 (323)
T 3t4n_C 252 ND-------------------------------------LSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVH 294 (323)
T ss_dssp HH-------------------------------------TTSBHHHHGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCC
T ss_pred hh-------------------------------------ccCCHHHHHhhccccCCCCEEECCCCCHHHHHHHHHHhCCC
Confidence 10 01234455555 789999999999999999999999
Q ss_pred EEEEeeccccCCCCcEEEEEehhhchhhHhhh
Q 003966 738 HLLVVPKYEAAGVSPVVGILTRQDLRAFNILT 769 (783)
Q Consensus 738 ~lpVVd~~~~~~~~~vvGIITr~DLl~~~~~~ 769 (783)
++||+|+ +|+++|+||++|++++...+
T Consensus 295 ~l~Vvd~-----~~~l~Giit~~Dil~~l~~~ 321 (323)
T 3t4n_C 295 RFFVVDD-----VGRLVGVLTLSDILKYILLG 321 (323)
T ss_dssp EEEEECT-----TSBEEEEEEHHHHHHHHHHC
T ss_pred EEEEECC-----CCcEEEEEEHHHHHHHHHhc
Confidence 9999997 78999999999999987653
No 52
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=99.43 E-value=4.6e-13 Score=140.69 Aligned_cols=133 Identities=17% Similarity=0.246 Sum_probs=107.9
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhh
Q 003966 588 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK 667 (783)
Q Consensus 588 ~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~ 667 (783)
..+++++|.+ ++.++++++++.++.+.|.+++++.+||++ + ++++|+|+++|++..+.+.......
T Consensus 147 ~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-----------~~~~Givt~~dl~~~~~~~~~~~~~ 212 (280)
T 3kh5_A 147 NEVIDDYITR--DVIVATPGERLKDVARTMVRNGFRRLPVVS-E-----------GRLVGIITSTDFIKLLGSDWAFNHM 212 (280)
T ss_dssp TCBSGGGCBC--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-T-----------TEEEEEEEHHHHHHHHTSHHHHHHH
T ss_pred CCCHHHHhCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEE-C-----------CEEEEEEEHHHHHHHHhhhhhhhhh
Confidence 3578999998 899999999999999999999999999994 4 7999999999998876542211000
Q ss_pred ccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeecccc
Q 003966 668 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA 747 (783)
Q Consensus 668 ~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~ 747 (783)
. .-...+ ....+++++|+++++++++++++.+|.++|.+.+.+++||+|+
T Consensus 213 ~---------~~~~~~------------------~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~--- 262 (280)
T 3kh5_A 213 Q---------TGNVRE------------------ITNVRMEEIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDE--- 262 (280)
T ss_dssp H---------SCCTHH------------------HHHCBHHHHSBSSCCCBCTTCBHHHHHHHHHHHTCCEEEEECT---
T ss_pred c---------ccchhh------------------hhCCcHHHHhcCCCEEECCCCCHHHHHHHHHHCCCCEEEEECC---
Confidence 0 000000 1124577889999999999999999999999999999999997
Q ss_pred CCCCcEEEEEehhhchhhH
Q 003966 748 AGVSPVVGILTRQDLRAFN 766 (783)
Q Consensus 748 ~~~~~vvGIITr~DLl~~~ 766 (783)
+|+++|+||++|+++++
T Consensus 263 --~g~~~Givt~~dil~~l 279 (280)
T 3kh5_A 263 --NLRIKGIITEKDVLKYF 279 (280)
T ss_dssp --TCBEEEEEEHHHHGGGG
T ss_pred --CCeEEEEEeHHHHHHhh
Confidence 78999999999999864
No 53
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=99.42 E-value=2.8e-13 Score=142.76 Aligned_cols=150 Identities=15% Similarity=0.171 Sum_probs=107.1
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHH------HHHHh
Q 003966 587 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV------LALKK 660 (783)
Q Consensus 587 ~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl------~lL~~ 660 (783)
...+++++|.+ ++.++++++++.++.+.|.+++++.+||+|++ ++++|+|+++|++ +.+.+
T Consensus 124 ~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~-----------~~~~Giit~~dl~~~~~~~~~~~~ 190 (282)
T 2yzq_A 124 KGVEIEPYYQR--YVSIVWEGTPLKAALKALLLSNSMALPVVDSE-----------GNLVGIVDETDLLRDSEIVRIMKS 190 (282)
T ss_dssp GGCBSTTTSBS--CCCCEETTSBHHHHHHHHHTCSSSEEEEECTT-----------SCEEEEEEGGGGGGCGGGCC----
T ss_pred ccCcHHHHhCC--CCEEECCCCCHHHHHHHHHHcCCcEEEEEcCC-----------CeEEEEEEHHHHhhhhhhhhhhcc
Confidence 35678999988 89999999999999999999999999999876 7999999999997 22210
Q ss_pred chhhhhhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEE
Q 003966 661 KWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLL 740 (783)
Q Consensus 661 ~~f~~~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lp 740 (783)
......+. ..+ +. .....++.. .........+++++|++++.++.+++++.+|+++|.+.+++++|
T Consensus 191 ~~~~~~~~--~~~-~~-~~~~~~~~~----------~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lp 256 (282)
T 2yzq_A 191 TELAASSE--EEW-IL-ESHPTLLFE----------KFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLP 256 (282)
T ss_dssp ------------------------------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEE
T ss_pred chhhhhhh--hhh-hc-ccchHHHHh----------HhhhhhccCCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeE
Confidence 00000000 000 00 000000000 00011123568899999999999999999999999999999999
Q ss_pred EeeccccCCCCcEEEEEehhhchhhHhh
Q 003966 741 VVPKYEAAGVSPVVGILTRQDLRAFNIL 768 (783)
Q Consensus 741 VVd~~~~~~~~~vvGIITr~DLl~~~~~ 768 (783)
|+|+ +|+++|+||++|+++++.+
T Consensus 257 Vvd~-----~~~lvGiit~~Dil~~~~~ 279 (282)
T 2yzq_A 257 VIRG-----EGDLIGLIRDFDLLKVLVK 279 (282)
T ss_dssp EEET-----TTEEEEEEEHHHHGGGGCC
T ss_pred EECC-----CCCEEEEEeHHHHHHHHHh
Confidence 9997 7899999999999987653
No 54
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=99.38 E-value=2.4e-12 Score=135.20 Aligned_cols=122 Identities=20% Similarity=0.254 Sum_probs=107.0
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhh
Q 003966 588 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK 667 (783)
Q Consensus 588 ~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~ 667 (783)
+.+++|+|.+ +++++++++++.++++.|.+++++.+||+|++ ++++|+++.+|++..+.+...
T Consensus 83 ~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----------~~~~Givt~~dl~~~~~~~~~---- 145 (280)
T 3kh5_A 83 NEPVREIMEE--NVITLKENADIDEAIETFLTKNVGGAPIVNDE-----------NQLISLITERDVIRALLDKID---- 145 (280)
T ss_dssp TSBGGGTSBC--SCCCEETTCBHHHHHHHHHHTTCSEEEEECTT-----------CBEEEEEEHHHHHHHHGGGSC----
T ss_pred hhhHHHhcCC--CCEEECCCCCHHHHHHHHHhCCCCEEEEEcCC-----------CEEEEEEEHHHHHHHHhhcCC----
Confidence 4689999998 99999999999999999999999999999886 899999999999876543210
Q ss_pred ccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeecccc
Q 003966 668 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA 747 (783)
Q Consensus 668 ~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~ 747 (783)
....+.++|++++.++++++++.++.++|++.+.+++||+ +
T Consensus 146 -----------------------------------~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~--- 186 (280)
T 3kh5_A 146 -----------------------------------ENEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVV-S--- 186 (280)
T ss_dssp -----------------------------------TTCBSGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEE-E---
T ss_pred -----------------------------------CCCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEE-E---
Confidence 0124678888999999999999999999999999999999 5
Q ss_pred CCCCcEEEEEehhhchhhHh
Q 003966 748 AGVSPVVGILTRQDLRAFNI 767 (783)
Q Consensus 748 ~~~~~vvGIITr~DLl~~~~ 767 (783)
+|+++|+||++|+++...
T Consensus 187 --~~~~~Givt~~dl~~~~~ 204 (280)
T 3kh5_A 187 --EGRLVGIITSTDFIKLLG 204 (280)
T ss_dssp --TTEEEEEEEHHHHHHHHT
T ss_pred --CCEEEEEEEHHHHHHHHh
Confidence 689999999999998764
No 55
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=99.37 E-value=9.6e-13 Score=139.97 Aligned_cols=122 Identities=17% Similarity=0.240 Sum_probs=106.7
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhh
Q 003966 588 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK 667 (783)
Q Consensus 588 ~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~ 667 (783)
+.+++|+|.+ +++++.+++++.++++.|.+++++.+||+|++ ++++|+|+.+|++..+....
T Consensus 92 ~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~-----------~~lvGivt~~dl~~~~~~~~----- 153 (296)
T 3ddj_A 92 TTPIIDYMTP--NPVTVYNTSDEFTAINIMVTRNFGSLPVVDIN-----------DKPVGIVTEREFLLLYKDLD----- 153 (296)
T ss_dssp TSBGGGTSEE--SCCCEETTSCHHHHHHHHHHHTCSEEEEECTT-----------SCEEEEEEHHHHGGGGGGSC-----
T ss_pred cccHHHhccC--CCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCC-----------CcEEEEEeHHHHHHhhhccc-----
Confidence 5689999999 89999999999999999999999999999876 89999999999965432110
Q ss_pred ccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeecccc
Q 003966 668 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA 747 (783)
Q Consensus 668 ~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~ 747 (783)
....+.++|++++.++++++++.++.++|++.+.+++||+|+
T Consensus 154 -----------------------------------~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~--- 195 (296)
T 3ddj_A 154 -----------------------------------EIFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDD--- 195 (296)
T ss_dssp -----------------------------------CCCBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECT---
T ss_pred -----------------------------------ccccHHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcC---
Confidence 012466778889999999999999999999999999999997
Q ss_pred CCCCcEEEEEehhhchhhHh
Q 003966 748 AGVSPVVGILTRQDLRAFNI 767 (783)
Q Consensus 748 ~~~~~vvGIITr~DLl~~~~ 767 (783)
+|+++|+||++|+++...
T Consensus 196 --~~~~~Givt~~dl~~~~~ 213 (296)
T 3ddj_A 196 --DNKVVGIVTVVNAIKQLA 213 (296)
T ss_dssp --TSCEEEEEEHHHHHHHHH
T ss_pred --CCEEEEEEEHHHHHHHHH
Confidence 789999999999998765
No 56
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=99.36 E-value=1.7e-12 Score=147.39 Aligned_cols=121 Identities=20% Similarity=0.209 Sum_probs=106.2
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcC-----CCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhc
Q 003966 587 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNT-----THNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKK 661 (783)
Q Consensus 587 ~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t-----~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~ 661 (783)
...+++++|++ ++++++++++++++.+.++++ +++.+||+|++ ++++|+|+.+|++.. .
T Consensus 153 ~~~~v~~iM~~--~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~-----------~~lvGiVt~~Dll~~---~ 216 (473)
T 2zy9_A 153 EEDEAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-----------GRLKGVLSLRDLIVA---D 216 (473)
T ss_dssp CTTBSTTTCBS--CEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTT-----------SBEEEEEEHHHHHHS---C
T ss_pred CCCCHHHhCCC--CceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCC-----------CcEEEEEEHHHHhcC---C
Confidence 45789999999 999999999999999999986 46899999986 899999999998541 0
Q ss_pred hhhhhhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEE
Q 003966 662 WFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLV 741 (783)
Q Consensus 662 ~f~~~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpV 741 (783)
...+++++|++++++|++++++.++.++|++++++.+||
T Consensus 217 -----------------------------------------~~~~v~dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpV 255 (473)
T 2zy9_A 217 -----------------------------------------PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPV 255 (473)
T ss_dssp -----------------------------------------TTSBGGGTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEE
T ss_pred -----------------------------------------CCCcHHHHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEE
Confidence 013578899999999999999999999999999999999
Q ss_pred eeccccCCCCcEEEEEehhhchhhHhhh
Q 003966 742 VPKYEAAGVSPVVGILTRQDLRAFNILT 769 (783)
Q Consensus 742 Vd~~~~~~~~~vvGIITr~DLl~~~~~~ 769 (783)
||+ +|+++|+||++|+++....+
T Consensus 256 VDe-----~g~lvGiIT~~Dil~~i~~e 278 (473)
T 2zy9_A 256 VDE-----EGRLVGIVTVDDVLDVLEAE 278 (473)
T ss_dssp ECT-----TSBEEEEEEHHHHHHHHHHH
T ss_pred EcC-----CCEEEEEEehHhhHHHHHHH
Confidence 998 89999999999999876554
No 57
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=99.35 E-value=2.8e-12 Score=138.83 Aligned_cols=128 Identities=13% Similarity=0.146 Sum_probs=106.3
Q ss_pred cccccc---ccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhh
Q 003966 588 TLTVGE---LIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL 664 (783)
Q Consensus 588 ~l~v~d---vM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~ 664 (783)
+.++++ +|.+ ++.++++++++.++.+.|.+++++.+||+|++ ++++|+|+++|++..+.+..+.
T Consensus 181 ~~~v~~l~~~m~~--~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~-----------~~~~Giit~~dl~~~~~~~~~~ 247 (334)
T 2qrd_G 181 RVPLNQMTIGTWS--NLATASMETKVYDVIKMLAEKNISAVPIVNSE-----------GTLLNVYESVDVMHLIQDGDYS 247 (334)
T ss_dssp CCBGGGSSCSBCS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-----------CBEEEEEETHHHHHHHTTSCGG
T ss_pred hCcHHHhCCcccC--CceEECCCCcHHHHHHHHHHcCCcEEEEEcCC-----------CcEEEEEEHHHHHHHhhccccc
Confidence 456778 5888 89999999999999999999999999999976 8999999999998766432110
Q ss_pred hhhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCcccccc------CCCeeecCCCCHHHHHHHHHHcCCCE
Q 003966 665 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTN------TTPYTVIESMSVAKAMVLFRQVGLRH 738 (783)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~------~~p~tV~~~~sL~~a~~lf~~~glr~ 738 (783)
. ....+.++|+ ++++++.+++++.++.++|.+.+.++
T Consensus 248 ~-------------------------------------~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~ 290 (334)
T 2qrd_G 248 N-------------------------------------LDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHR 290 (334)
T ss_dssp G-------------------------------------GGSBHHHHHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCE
T ss_pred c-------------------------------------ccCcHHHHHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCE
Confidence 0 0123445555 47889999999999999999999999
Q ss_pred EEEeeccccCCCCcEEEEEehhhchhhHhhhh
Q 003966 739 LLVVPKYEAAGVSPVVGILTRQDLRAFNILTA 770 (783)
Q Consensus 739 lpVVd~~~~~~~~~vvGIITr~DLl~~~~~~~ 770 (783)
+||+|+ +|+++|+||++|++++...+.
T Consensus 291 l~Vvd~-----~g~l~Giit~~dil~~~~~~~ 317 (334)
T 2qrd_G 291 LFVVDE-----NLKLEGILSLADILNYIIYDK 317 (334)
T ss_dssp EEEECT-----TCBEEEEEEHHHHHHHHHSCC
T ss_pred EEEECC-----CCeEEEEEeHHHHHHHHHhcc
Confidence 999997 789999999999999877543
No 58
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=99.31 E-value=1.4e-12 Score=137.39 Aligned_cols=117 Identities=21% Similarity=0.290 Sum_probs=87.9
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhc
Q 003966 589 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 668 (783)
Q Consensus 589 l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~ 668 (783)
++++|+|.+ +++++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+|++..+.+
T Consensus 1 m~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~-----------~~~~Giv~~~dl~~~~~~-------- 59 (282)
T 2yzq_A 1 MRVKTIMTQ--NPVTITLPATRNYALELFKKYKVRSFPVVNKE-----------GKLVGIISVKRILVNPDE-------- 59 (282)
T ss_dssp CBHHHHSEE--SCCCEESSCC------------CCEEEEECTT-----------CCEEEEEESSCC--------------
T ss_pred CchHHhccC--CCeEECCCCcHHHHHHHHHHcCCCeEEEEcCC-----------CcEEEEEEHHHHHhhhcc--------
Confidence 478999998 99999999999999999999999999999975 899999999998643210
Q ss_pred cchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccC
Q 003966 669 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA 748 (783)
Q Consensus 669 ~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~ 748 (783)
..++++|.+++.++++++++.++.++|.+.+.+++||+|+
T Consensus 60 ------------------------------------~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~---- 99 (282)
T 2yzq_A 60 ------------------------------------EQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDS---- 99 (282)
T ss_dssp ----------------------------------------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECT----
T ss_pred ------------------------------------CCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC----
Confidence 2356788888999999999999999999999999999997
Q ss_pred CCCcEEEEEehhhchh-hHh
Q 003966 749 GVSPVVGILTRQDLRA-FNI 767 (783)
Q Consensus 749 ~~~~vvGIITr~DLl~-~~~ 767 (783)
+|+++|+||++|+++ .+.
T Consensus 100 -~~~~~Giit~~di~~~~~~ 118 (282)
T 2yzq_A 100 -KGKPVGILTVGDIIRRYFA 118 (282)
T ss_dssp -TSCEEEEEEHHHHHHHTTT
T ss_pred -CCEEEEEEEHHHHHHHHHh
Confidence 689999999999998 554
No 59
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=99.29 E-value=1.4e-11 Score=133.17 Aligned_cols=146 Identities=14% Similarity=0.104 Sum_probs=109.6
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhh
Q 003966 586 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 665 (783)
Q Consensus 586 l~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~ 665 (783)
+++.+++|+|.++.+++++++++++.++++.|.+++++.+||+|++ .++++|+|+.+|++..+....-..
T Consensus 32 l~~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~----------~~~~vGivt~~Dll~~l~~~~~~~ 101 (330)
T 2v8q_E 32 MKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSK----------KQSFVGMLTITDFINILHRYYKSA 101 (330)
T ss_dssp HHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETT----------TTEEEEEEEHHHHHHHHHHHHHHH
T ss_pred HHcCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCC----------CCeEEEEEEHHHHHHHHHHHHhcc
Confidence 5678999999433399999999999999999999999999999874 168999999999987664311000
Q ss_pred hhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeecc
Q 003966 666 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 745 (783)
Q Consensus 666 ~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~ 745 (783)
+.... + .+.....++. -.+.++|.++++++++++++.+++++|++.+.+++||+|+
T Consensus 102 ~~~~~---~-l~~~~~~~~~-------------------~~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~- 157 (330)
T 2v8q_E 102 LVQIY---E-LEEHKIETWR-------------------EVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDP- 157 (330)
T ss_dssp TTTCC---C-GGGCBHHHHH-------------------HHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECT-
T ss_pred ccchh---H-HhhccHHHHH-------------------HHHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeC-
Confidence 00000 0 0001111111 0245778899999999999999999999999999999984
Q ss_pred ccCCCCcEEEEEehhhchhhHhh
Q 003966 746 EAAGVSPVVGILTRQDLRAFNIL 768 (783)
Q Consensus 746 ~~~~~~~vvGIITr~DLl~~~~~ 768 (783)
++|+++|+||++|+++....
T Consensus 158 ---~~~~~~Givt~~dl~~~~~~ 177 (330)
T 2v8q_E 158 ---ESGNTLYILTHKRILKFLKL 177 (330)
T ss_dssp ---TTCCEEEEECHHHHHHHHHH
T ss_pred ---CCCcEEEEEcHHHHHHHHHH
Confidence 14789999999999987643
No 60
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=99.26 E-value=1.4e-11 Score=140.65 Aligned_cols=119 Identities=14% Similarity=0.204 Sum_probs=102.8
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecC--CCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhh
Q 003966 589 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDE--GVVPPSGLANVATELHGLILRAHLVLALKKKWFLQE 666 (783)
Q Consensus 589 l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~--~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~ 666 (783)
++.++.|.+ +++++++++++.++.+.|.+++++++||+|+ + ++++|+|+.+|++. . .+
T Consensus 113 ~~~~~~m~~--d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~-----------~~lvGiVt~rDl~~---~----~~ 172 (511)
T 3usb_A 113 KRSESGVIS--DPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDE-----------RKLVGIITNRDMRF---I----QD 172 (511)
T ss_dssp HTSSSCSSS--SCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTT-----------CBEEEEEEHHHHTT---C----CC
T ss_pred hcccccccc--CCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCC-----------CEEEEEEEehHhhh---h----cc
Confidence 345677888 8899999999999999999999999999997 4 89999999999932 0 00
Q ss_pred hccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccC-CCeeecCCCCHHHHHHHHHHcCCCEEEEeecc
Q 003966 667 KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT-TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 745 (783)
Q Consensus 667 ~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~-~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~ 745 (783)
...+++++|++ +++++++++++.++.++|++.+.+.+||||+
T Consensus 173 ------------------------------------~~~~V~~vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe- 215 (511)
T 3usb_A 173 ------------------------------------YSIKISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDN- 215 (511)
T ss_dssp ------------------------------------SSSBHHHHCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECT-
T ss_pred ------------------------------------CCCcHHHhcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeC-
Confidence 11346778887 8999999999999999999999999999998
Q ss_pred ccCCCCcEEEEEehhhchhhHhh
Q 003966 746 EAAGVSPVVGILTRQDLRAFNIL 768 (783)
Q Consensus 746 ~~~~~~~vvGIITr~DLl~~~~~ 768 (783)
+|+++|+||++|+++....
T Consensus 216 ----~g~l~GiIT~~Dil~~~~~ 234 (511)
T 3usb_A 216 ----NGVLQGLITIKDIEKVIEF 234 (511)
T ss_dssp ----TSBEEEEEEHHHHHHHHHC
T ss_pred ----CCCEeeeccHHHHHHhhhc
Confidence 8999999999999997653
No 61
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=99.25 E-value=3.6e-12 Score=145.09 Aligned_cols=117 Identities=17% Similarity=0.273 Sum_probs=89.1
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhc
Q 003966 589 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 668 (783)
Q Consensus 589 l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~ 668 (783)
.+++++|.+ +++++++++++.++.+.|++++|+++||+|++ ++++|+|+.+||+. ..+
T Consensus 89 k~~~~~m~~--d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~-----------~~lvGiVt~rDL~~-------~~~-- 146 (496)
T 4fxs_A 89 KIFEAGVVT--HPVTVRPEQTIADVMELTHYHGFAGFPVVTEN-----------NELVGIITGRDVRF-------VTD-- 146 (496)
T ss_dssp HHCCC--CB--CCCCBCSSSBHHHHHHHHTSSCCCEEEEECSS-----------SBEEEEEEHHHHTT-------CCC--
T ss_pred ccccccccc--CceEECCCCCHHHHHHHHHHcCCcEEEEEccC-----------CEEEEEEEHHHHhh-------ccc--
Confidence 356788998 89999999999999999999999999999986 89999999999841 000
Q ss_pred cchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCcccccc-C-CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccc
Q 003966 669 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTN-T-TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE 746 (783)
Q Consensus 669 ~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~-~-~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~ 746 (783)
...+++++|+ + +++++++++++.+++++|++++++++||||+
T Consensus 147 ----------------------------------~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe-- 190 (496)
T 4fxs_A 147 ----------------------------------LTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVND-- 190 (496)
T ss_dssp ----------------------------------TTSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECT--
T ss_pred ----------------------------------CCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC--
Confidence 1245788888 4 5899999999999999999999999999998
Q ss_pred cCCCCcEEEEEehhhchhhH
Q 003966 747 AAGVSPVVGILTRQDLRAFN 766 (783)
Q Consensus 747 ~~~~~~vvGIITr~DLl~~~ 766 (783)
+|+++|+||++|+++..
T Consensus 191 ---~G~l~GiIT~~DIl~~~ 207 (496)
T 4fxs_A 191 ---EFQLKGMITAKDFHKAE 207 (496)
T ss_dssp ---TSBCCEEECCC-----C
T ss_pred ---CCCEEEeehHhHHHHhh
Confidence 89999999999999854
No 62
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=99.23 E-value=3.3e-11 Score=130.30 Aligned_cols=146 Identities=18% Similarity=0.190 Sum_probs=107.4
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhh
Q 003966 586 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 665 (783)
Q Consensus 586 l~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~ 665 (783)
+++.+++|+|.++.+++++++++++.++++.|.+++++.+||+|++ .++++|+|+.+|++..+....-..
T Consensus 19 l~~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~----------~~~~vGiv~~~Dl~~~~~~~~~~~ 88 (334)
T 2qrd_G 19 IRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSE----------ANKFAGLLTMADFVNVIKYYYQSS 88 (334)
T ss_dssp HHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETT----------TTEEEEEECHHHHHHHHHHHHHHC
T ss_pred HhcCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCC----------CCeEEEEEEHHHHHHHHHHHhhcc
Confidence 4568999999876679999999999999999999999999999873 269999999999988664311000
Q ss_pred -hhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCC--eeecCCCCHHHHHHHHHHcCCCEEEEe
Q 003966 666 -EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTP--YTVIESMSVAKAMVLFRQVGLRHLLVV 742 (783)
Q Consensus 666 -~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p--~tV~~~~sL~~a~~lf~~~glr~lpVV 742 (783)
... ..+..+.....++.+ -++++|.+++ +++++++++.+++++|++.+.+++||+
T Consensus 89 ~~~~---~~~~~~~~~~~~i~~-------------------~l~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv 146 (334)
T 2qrd_G 89 SFPE---AIAEIDKFRLLGLRE-------------------VERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLI 146 (334)
T ss_dssp SCGG---GGGGGGSCBHHHHHH-------------------HHHHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEE
T ss_pred CCcc---HHHHHhhhchhhHHH-------------------HHHhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEE
Confidence 000 000000011111110 0134566677 899999999999999999999999999
Q ss_pred eccccCCCC-c----EEEEEehhhchhhHhh
Q 003966 743 PKYEAAGVS-P----VVGILTRQDLRAFNIL 768 (783)
Q Consensus 743 d~~~~~~~~-~----vvGIITr~DLl~~~~~ 768 (783)
|+ ++ + ++|+||++|+++....
T Consensus 147 d~-----~~~~~~~~~~Givt~~dl~~~~~~ 172 (334)
T 2qrd_G 147 DV-----DGETGSEMIVSVLTQYRILKFISM 172 (334)
T ss_dssp EE-----ETTTTEEEEEEEEEHHHHHHHHHH
T ss_pred eC-----CCCcCccceEEEeeHHHHHHHHHh
Confidence 87 43 4 9999999999987653
No 63
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=99.21 E-value=4.2e-11 Score=128.85 Aligned_cols=132 Identities=6% Similarity=0.048 Sum_probs=100.8
Q ss_pred ccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhcc
Q 003966 590 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRR 669 (783)
Q Consensus 590 ~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~ 669 (783)
++.++|.+ +++++++++++.++++.|.+++++.+||+|++. . .+.++++|+|+.+|++..+....-.
T Consensus 115 ~~~~~~~~--~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~--~----~~~~~l~Givt~~di~~~l~~~~~~----- 181 (323)
T 3t4n_C 115 RALGVDQL--DTASIHPSRPLFEACLKMLESRSGRIPLIDQDE--E----THREIVVSVLTQYRILKFVALNCRE----- 181 (323)
T ss_dssp HHTTC------CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECT--T----TCCEEEEEEEEHHHHHHHHHHHCGG-----
T ss_pred HHhCCCCC--CceEeCCCCcHHHHHHHHHhCCeeEEEEEecCC--C----CCccceEEEecHHHHHHHHHhcCCc-----
Confidence 45566777 899999999999999999999999999999750 0 0111499999999998766431100
Q ss_pred chhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCcccc---ccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccc
Q 003966 670 TEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPL---TNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE 746 (783)
Q Consensus 670 ~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~i---m~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~ 746 (783)
.++ ....++++ |.++++++.+++++.++.++|.+.+.+++||+|+
T Consensus 182 ------------~~~------------------~~~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~-- 229 (323)
T 3t4n_C 182 ------------THF------------------LKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE-- 229 (323)
T ss_dssp ------------GGG------------------CCSBGGGTTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECT--
T ss_pred ------------hhh------------------hhCcHHHcCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECC--
Confidence 000 01235566 8889999999999999999999999999999997
Q ss_pred cCCCCcEEEEEehhhchhhHhhh
Q 003966 747 AAGVSPVVGILTRQDLRAFNILT 769 (783)
Q Consensus 747 ~~~~~~vvGIITr~DLl~~~~~~ 769 (783)
+|+++|+||++|+++....+
T Consensus 230 ---~~~~~Giit~~dl~~~~~~~ 249 (323)
T 3t4n_C 230 ---NGYLINVYEAYDVLGLIKGG 249 (323)
T ss_dssp ---TCBEEEEEETTHHHHHHHTT
T ss_pred ---CCeEEEEEeHHHHHHHHhhc
Confidence 78999999999999865543
No 64
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=99.21 E-value=5.9e-11 Score=128.19 Aligned_cols=130 Identities=18% Similarity=0.123 Sum_probs=102.4
Q ss_pred ccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecC-CCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhc
Q 003966 590 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDE-GVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 668 (783)
Q Consensus 590 ~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~-~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~ 668 (783)
+++++|.+ +++++++++++.++++.|.+++++.+||+|+ + ++++|+|+.+|++..+.... ...
T Consensus 119 ~~~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~-----------~~~~Givt~~dl~~~~~~~~-~~~-- 182 (330)
T 2v8q_E 119 VYLQDSFK--PLVCISPNASLFDAVSSLIRNKIHRLPVIDPES-----------GNTLYILTHKRILKFLKLFI-TEF-- 182 (330)
T ss_dssp HHSSSSCC--CCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTT-----------CCEEEEECHHHHHHHHHHHS-CSS--
T ss_pred HHhhcccC--CceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCC-----------CcEEEEEcHHHHHHHHHHHh-hcc--
Confidence 35678988 8999999999999999999999999999997 5 89999999999987664311 000
Q ss_pred cchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccc--ccc-CCCeeecCCCCHHHHHHHHHHcCCCEEEEeecc
Q 003966 669 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHP--LTN-TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 745 (783)
Q Consensus 669 ~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~--im~-~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~ 745 (783)
...++. ...+++ +|+ +++.++.+++++.++.++|.+.+.+++||+|+
T Consensus 183 -----------~~~~~~------------------~~~v~~~~v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~- 232 (330)
T 2v8q_E 183 -----------PKPEFM------------------SKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDE- 232 (330)
T ss_dssp -----------SCCGGG------------------GSBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECT-
T ss_pred -----------Cchhhh------------------cCCHHHhcccCcCCceEECCCCCHHHHHHHHHHcCCCeEEEECC-
Confidence 000000 011222 244 77889999999999999999999999999997
Q ss_pred ccCCCCcEEEEEehhhchhhHhhh
Q 003966 746 EAAGVSPVVGILTRQDLRAFNILT 769 (783)
Q Consensus 746 ~~~~~~~vvGIITr~DLl~~~~~~ 769 (783)
+|+++|+||++|+++....+
T Consensus 233 ----~~~l~Giit~~dl~~~~~~~ 252 (330)
T 2v8q_E 233 ----KGRVVDIYSKFDVINLAAEK 252 (330)
T ss_dssp ----TSBEEEEEEGGGTGGGGGSS
T ss_pred ----CCcEEEEEEHHHHHHHHhcc
Confidence 78999999999999876543
No 65
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=99.20 E-value=4e-11 Score=137.13 Aligned_cols=117 Identities=14% Similarity=0.207 Sum_probs=103.2
Q ss_pred ccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeec--CCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhh
Q 003966 590 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLD--EGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK 667 (783)
Q Consensus 590 ~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd--~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~ 667 (783)
+++|+|.+ +++++++++++.++++.|++++++.+||+| ++ ++++|+|+.+|++.. . +
T Consensus 91 ~~~~im~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~-----------~~lvGivt~~Dl~~~---~----~- 149 (491)
T 1zfj_A 91 RSENGVII--DPFFLTPEHKVSEAEELMQRYRISGVPIVETLAN-----------RKLVGIITNRDMRFI---S----D- 149 (491)
T ss_dssp HHTTTTSS--SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTT-----------CBEEEEEEHHHHHHC---S----C-
T ss_pred hHHhcCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCC-----------CEEEEEEEHHHHhhh---c----c-
Confidence 34789998 899999999999999999999999999998 54 899999999999531 0 0
Q ss_pred ccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccC-CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccc
Q 003966 668 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT-TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE 746 (783)
Q Consensus 668 ~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~-~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~ 746 (783)
...+++++|++ +++++++++++.+++++|++.+.+++||||+
T Consensus 150 -----------------------------------~~~~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~-- 192 (491)
T 1zfj_A 150 -----------------------------------YNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDN-- 192 (491)
T ss_dssp -----------------------------------SSSBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECT--
T ss_pred -----------------------------------CCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC--
Confidence 11357888988 8999999999999999999999999999998
Q ss_pred cCCCCcEEEEEehhhchhhHh
Q 003966 747 AAGVSPVVGILTRQDLRAFNI 767 (783)
Q Consensus 747 ~~~~~~vvGIITr~DLl~~~~ 767 (783)
+++++|+||++|+++...
T Consensus 193 ---~g~lvGivt~~Dil~~~~ 210 (491)
T 1zfj_A 193 ---SGRLSGLITIKDIEKVIE 210 (491)
T ss_dssp ---TSBEEEEEEHHHHHHHHH
T ss_pred ---CCcEEEEEEHHHHHHHHh
Confidence 899999999999999765
No 66
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=99.14 E-value=5.6e-12 Score=143.44 Aligned_cols=116 Identities=17% Similarity=0.234 Sum_probs=3.4
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhc
Q 003966 589 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 668 (783)
Q Consensus 589 l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~ 668 (783)
.+++++|.+ +++++++++++.++++.|++++++.+||+| + ++++|+|+.+||... .
T Consensus 88 k~~~~~m~~--~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~-----------g~lvGIVt~rDl~~~-------~--- 143 (490)
T 4avf_A 88 KKHETAIVR--DPVTVTPSTKIIELLQMAREYGFSGFPVVE-Q-----------GELVGIVTGRDLRVK-------P--- 143 (490)
T ss_dssp HHCCC---------------------------------------------------------------------------
T ss_pred cccccCccc--CceEeCCCCcHHHHHHHHHHhCCCEEEEEE-C-----------CEEEEEEEhHHhhhc-------c---
Confidence 457889998 889999999999999999999999999999 5 799999999998421 0
Q ss_pred cchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCcccccc-C-CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccc
Q 003966 669 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTN-T-TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE 746 (783)
Q Consensus 669 ~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~-~-~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~ 746 (783)
+...+++++|+ + +++++++++++.++.++|++.+++++||||+
T Consensus 144 ---------------------------------~~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe-- 188 (490)
T 4avf_A 144 ---------------------------------NAGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDE-- 188 (490)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------ccCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcC--
Confidence 01135778888 4 6899999999999999999999999999998
Q ss_pred cCCCCcEEEEEehhhchhhH
Q 003966 747 AAGVSPVVGILTRQDLRAFN 766 (783)
Q Consensus 747 ~~~~~~vvGIITr~DLl~~~ 766 (783)
+|+++|+||++|+++..
T Consensus 189 ---~g~lvGiIT~~Dil~~~ 205 (490)
T 4avf_A 189 ---NFYLRGLVTFRDIEKAK 205 (490)
T ss_dssp --------------------
T ss_pred ---CCcEEEEEehHHhhhhc
Confidence 89999999999999864
No 67
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=99.14 E-value=5.9e-12 Score=140.17 Aligned_cols=121 Identities=17% Similarity=0.247 Sum_probs=2.8
Q ss_pred ccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccch
Q 003966 592 GELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTE 671 (783)
Q Consensus 592 ~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~ 671 (783)
+..|.. +++++.|+.+|.++.+++++++|+++||+|+. ..+++|+|+|+.+|+.- .+
T Consensus 141 e~g~i~--dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g--------~~~~kLvGIvT~RD~rf-------~d------ 197 (556)
T 4af0_A 141 ENGFIT--DPLCLGPDATVGDVLEIKAKFGFCGVPITETG--------EPDSKLLGIVTGRDVQF-------QD------ 197 (556)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred ccCccC--CCeEcCCCCCHHHHHHHHHHhCCCcccccccc--------CcCCEEEEEEecccccc-------cc------
Confidence 345667 78999999999999999999999999999874 22379999999999832 00
Q ss_pred hHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCC
Q 003966 672 EWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVS 751 (783)
Q Consensus 672 ~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~ 751 (783)
....++++|++.++|++++.++++|.++|.++++..+||||+ ++
T Consensus 198 -------------------------------~~~~V~evMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~-----~g 241 (556)
T 4af0_A 198 -------------------------------AETPIKSVMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDS-----NG 241 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------cceEhhhhcccceEEecCCCCHHHHHHHHHHccccceeEEcc-----CC
Confidence 113578889999999999999999999999999999999998 89
Q ss_pred cEEEEEehhhchhhHhhhhCCcc
Q 003966 752 PVVGILTRQDLRAFNILTAFPHL 774 (783)
Q Consensus 752 ~vvGIITr~DLl~~~~~~~~~~l 774 (783)
+++|+||++|+.+. +.+|+-
T Consensus 242 ~LvGlIT~kDi~k~---~~~p~A 261 (556)
T 4af0_A 242 HLVSLVARSDLLKN---QNYPYA 261 (556)
T ss_dssp -------------------CTTC
T ss_pred cEEEEEEechhhhh---hhCCcc
Confidence 99999999999884 345543
No 68
>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...
Probab=99.13 E-value=4e-10 Score=126.66 Aligned_cols=185 Identities=14% Similarity=0.199 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHH
Q 003966 91 LACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEIKAY 170 (783)
Q Consensus 91 ~~~liGv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~~ 170 (783)
..+++|+++|+++.+|+..+.+.++++.+. ..+.+. .+.....+.+++.+. ..++.|+..|.|.+.++..
T Consensus 239 ~~illGi~~Gl~g~~f~~~~~~~~~~~~~~-----~~~~~~----~~~~~~~l~g~~~g~-l~~~~p~~~G~G~~~i~~~ 308 (446)
T 4ene_A 239 LYLILGIIFGIFGPIFNKWVLGMQDLLHRV-----HGGNIT----KWVLMGGAIGGLCGL-LGFVAPATSGGGFNLIPIA 308 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HTTCHH----HHHHHHHHHHHHHHH-HHHHCGGGSSCCSTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cccchh----HHHHHHHHHHHHHHH-HHHHhHhhcCCcHHHHHHH
Confidence 467899999999999999988877654332 111111 112222223333343 3456799999999888888
Q ss_pred HhCCCCCCcchhHHHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHhhcCCCCcccchhhhhhccCCcchhhhHHHhh
Q 003966 171 LNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCG 250 (783)
Q Consensus 171 lng~~~~~~l~~~tl~~K~~~~~~sv~sG~s~G~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv~~G 250 (783)
++|. .+-..-.-.++.|++.+.+|+++|.+.|.-.|+.-+||++|..+++. .+. +++. ...+-..+..+|
T Consensus 309 ~~~~-~~~~~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~----~~~---~~p~--~~~~~~~~a~vG 378 (446)
T 4ene_A 309 TAGN-FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMV----AVE---LFPQ--YHLEAGTFAIAG 378 (446)
T ss_dssp HTTC-SCHHHHHHHHHHHHHHHHHHHTTTCSSBSHHHHHHHHHHHHHHHHHH----HHH---HCGG--GTCCHHHHHHHH
T ss_pred HcCC-chHHHHHHHHHHHHHHHHHHHccCCCcchhHHHHHHHHHHHHHHHHH----HHH---hCCc--cccCHHHHHHHH
Confidence 8762 11111234568999999999999999999999999999999999862 110 1111 124566789999
Q ss_pred hhhhhhhhccCcccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHH
Q 003966 251 SSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRA 298 (783)
Q Consensus 251 aAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~ 298 (783)
+||-++++-|+|+.+++..+|.+.+ ...+.+.++++++|..+.+.
T Consensus 379 maa~~a~~~~aPlt~~vl~~Eltg~---~~~~lpl~ia~~ia~~v~~~ 423 (446)
T 4ene_A 379 MGALLAASIRAPLTGIILVLEMTDN---YQLILPMIITGLGATLLAQF 423 (446)
T ss_dssp HTHHHHHHTCCHHHHHHHHHHHHCC---GGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHCC---hhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999875 34566677777777666653
No 69
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=99.13 E-value=5.4e-12 Score=144.37 Aligned_cols=119 Identities=22% Similarity=0.264 Sum_probs=7.0
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhc
Q 003966 589 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 668 (783)
Q Consensus 589 l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~ 668 (783)
.+++|+|.+ +++++++++++.++++.|++++++.+||+|++ ++++|+|+++|++.. . .
T Consensus 95 ~~~~~iM~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~-----------~~lvGivt~~Dl~~~--~-~------ 152 (494)
T 1vrd_A 95 KKTENGIIY--DPITVTPDMTVKEAIDLMAEYKIGGLPVVDEE-----------GRLVGLLTNRDVRFE--K-N------ 152 (494)
T ss_dssp HTC-----------------------------------------------------------------------------
T ss_pred hhHhhcCcc--CCeEECCCCCHHHHHHHHHHcCceEEEEEcCC-----------CEEEEEEEHHHHHhh--c-C------
Confidence 467899998 99999999999999999999999999999976 799999999999541 0 0
Q ss_pred cchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccC--CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccc
Q 003966 669 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE 746 (783)
Q Consensus 669 ~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~ 746 (783)
....++++|++ ++.++++++++.+++++|.+.+++++||||+
T Consensus 153 ----------------------------------~~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~-- 196 (494)
T 1vrd_A 153 ----------------------------------LSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSK-- 196 (494)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------CCCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcC--
Confidence 01346788888 9999999999999999999999999999998
Q ss_pred cCCCCcEEEEEehhhchhhHhh
Q 003966 747 AAGVSPVVGILTRQDLRAFNIL 768 (783)
Q Consensus 747 ~~~~~~vvGIITr~DLl~~~~~ 768 (783)
+++++|+||++|+++....
T Consensus 197 ---~g~lvGiIt~~Dll~~~~~ 215 (494)
T 1vrd_A 197 ---DNKLVGLITIKDIMSVIEH 215 (494)
T ss_dssp ---------------CHHHHTC
T ss_pred ---CCeEEEEEEHHHHHhhhcc
Confidence 8999999999999997654
No 70
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=99.12 E-value=5e-10 Score=126.63 Aligned_cols=185 Identities=15% Similarity=0.216 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHH
Q 003966 90 SLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEIKA 169 (783)
Q Consensus 90 ~~~~liGv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~ 169 (783)
...+++|+++|+++.+|+....+.++++.+.. ..+.+ . ++...++.+++.+.+ .++.|+..|.|-..++.
T Consensus 253 ~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~-----~~~~~-~---~~~~~~i~gl~~g~l-~~~~P~~lG~G~~~i~~ 322 (465)
T 1ots_A 253 WLYLILGIIFGIFGPIFNKWVLGMQDLLHRVH-----GGNIT-K---WVLMGGAIGGLCGLL-GFVAPATSGGGFNLIPI 322 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCHH-H---HHHHHHHHHHHHHHH-HHHCGGGSSCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cCCch-h---HHHHHHHHHHHHHHH-HHHhHhhcCChHHHHHH
Confidence 35689999999999999999888876554321 11111 1 112223344444433 46679999999888888
Q ss_pred HHhCCCCCCcchhHHHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHhhcCCCCcccchhhhhhccCCcchhhhHHHh
Q 003966 170 YLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITC 249 (783)
Q Consensus 170 ~lng~~~~~~l~~~tl~~K~~~~~~sv~sG~s~G~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv~~ 249 (783)
.+++. .+-..-.-.++.|++.+.+|+++|.+.|.-.|+.-+||++|..+++. .+. +++. ...+-..+..+
T Consensus 323 ~~~~~-~~~~~l~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~----~~~---~~p~--~~~~~~~~alv 392 (465)
T 1ots_A 323 ATAGN-FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMV----AVE---LFPQ--YHLEAGTFAIA 392 (465)
T ss_dssp HHHTC-SCHHHHHHHHHHHHHHHHHHHHTTCSSBSHHHHHHHHHHHHHHHHHH----HHH---HCGG--GTCCHHHHHHH
T ss_pred HHcCC-chHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHHHHHHHHHHHHH----HHH---HCCc--ccccHHHHHHH
Confidence 88762 11112344678999999999999999999999999999999999861 110 1111 22456689999
Q ss_pred hhhhhhhhhccCcccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHH
Q 003966 250 GSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLR 297 (783)
Q Consensus 250 GaAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~ 297 (783)
|+||-++++.|+|+.+++..+|.+.++ ..+.+.+++++++..+.+
T Consensus 393 Gmaa~~a~v~raPlt~ivlv~Eltg~~---~~llpl~ia~~iA~~v~~ 437 (465)
T 1ots_A 393 GMGALLAASIRAPLTGIILVLEMTDNY---QLILPMIITGLGATLLAQ 437 (465)
T ss_dssp HHTHHHHHTSCCHHHHHHHHHHHHCCG---GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998643 345566666666655554
No 71
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=99.09 E-value=7.3e-12 Score=143.21 Aligned_cols=126 Identities=13% Similarity=0.149 Sum_probs=4.7
Q ss_pred cccccccc-cccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhh
Q 003966 587 RTLTVGEL-IDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 665 (783)
Q Consensus 587 ~~l~v~dv-M~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~ 665 (783)
++++..|+ |.+ +++++++++++.++++.|++++++.+||+|++ ...++++|+|+.+|++.. . .
T Consensus 94 ~~V~~~e~gM~~--~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~--------~~~g~lvGiVt~~Dl~~~--~----~ 157 (503)
T 1me8_A 94 HAVKNFKAGFVV--SDSNVKPDQTFADVLAISQRTTHNTVAVTDDG--------TPHGVLLGLVTQRDYPID--L----T 157 (503)
T ss_dssp HHHHTTTC------------------------------------------------------------------------
T ss_pred hhhhhcccCccc--CCeEECCCCcHHHHHHHHHHcCceEEEEEECC--------CcCCeEEEEEEHHHHHhh--h----c
Confidence 34555566 988 89999999999999999999999999999863 112689999999999642 0 0
Q ss_pred hhccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCC--CeeecCCCCHHHHHHHHHHcCCCEEEEee
Q 003966 666 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTT--PYTVIESMSVAKAMVLFRQVGLRHLLVVP 743 (783)
Q Consensus 666 ~~~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~--p~tV~~~~sL~~a~~lf~~~glr~lpVVd 743 (783)
+...+++++|+++ ++++++++++.+++++|++.+.+++||||
T Consensus 158 ------------------------------------~~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVD 201 (503)
T 1me8_A 158 ------------------------------------QTETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIID 201 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------------------cccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEc
Confidence 0113567888887 99999999999999999999999999999
Q ss_pred ccccCCCCcEEEEEehhhchhhHhhh
Q 003966 744 KYEAAGVSPVVGILTRQDLRAFNILT 769 (783)
Q Consensus 744 ~~~~~~~~~vvGIITr~DLl~~~~~~ 769 (783)
+ +++++|+||++|+++.....
T Consensus 202 e-----~g~lvGiIT~~Dil~~~~~~ 222 (503)
T 1me8_A 202 D-----DQHLRYIVFRKDYDRSQVCH 222 (503)
T ss_dssp -------------------------C
T ss_pred C-----CCeEEEEEEecHHHHhhhcc
Confidence 8 78999999999999977643
No 72
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Probab=99.06 E-value=8.4e-10 Score=124.51 Aligned_cols=181 Identities=15% Similarity=0.173 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHH
Q 003966 91 LACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEIKAY 170 (783)
Q Consensus 91 ~~~liGv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~~ 170 (783)
..+++|+++|+++.+|+..+.+.++++.+. .+ .+++ ..+.+.+++.+.+ .++.|+..|.|.+.++..
T Consensus 249 ~~illGi~~Gl~g~lf~~~~~~~~~~~~~~-----~~----~~~~---~~~~l~g~~~g~l-~~~~p~~~G~G~~~i~~~ 315 (466)
T 3nd0_A 249 MFIILGILFGVMGYTFNRGLFKVLDWFDRL-----PP----LATK---WKGFLLGSIIGIL-SLFPLPLTDGGDNAVLWA 315 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CH----HHHH---HHHHHHHHHHHHH-TTSSSSCSSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cc----ccHH---HHHHHHHHHHHHH-HHHHHHHcCCcHHHHHHH
Confidence 468899999999999999887776543211 00 0111 1223334444433 467899999999889888
Q ss_pred HhCCCCCCcchhHHHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHhhcCCCCcccchhhhhhccCCcchhhhHHHhh
Q 003966 171 LNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCG 250 (783)
Q Consensus 171 lng~~~~~~l~~~tl~~K~~~~~~sv~sG~s~G~EGP~vhiGa~igs~l~~~~s~~~~l~~~~~~~f~~~~~~r~lv~~G 250 (783)
++|. .+-..-.-.++.|++.+.+|+++|.+.|.-.|+.-+||++|..+++. .+. +++. ...+-..+..+|
T Consensus 316 ~~~~-~~~~~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~----~~~---~~p~--~~~~~~~~a~vG 385 (466)
T 3nd0_A 316 FNSQ-SHFSTLILVFCGRFLLTLICYGSGAIGGIFAPMLGIASIVSVAMARH----FHL---LFPS--QIPEPAVMAIAG 385 (466)
T ss_dssp TTSC-CCHHHHHHHHHHHHHHHHHHHHTTCBCCSHHHHHHHHHHHHHHHHHH----HHH---HCTT--TCSSTHHHHHHT
T ss_pred HcCC-ccHHHHHHHHHHHHHHHHHHHhCCCCCceehHHHHHHHHHHHHHHHH----HHH---hCCc--cccCHHHHHHHH
Confidence 8762 11111235678999999999999999999999999999999999861 110 1111 134567899999
Q ss_pred hhhhhhhhccCcccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHH
Q 003966 251 SSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLR 297 (783)
Q Consensus 251 aAAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~ 297 (783)
+||-++++-|+|+++++..+|.+.++ ..+.+.++++++|..+.+
T Consensus 386 maa~~a~v~~aPlt~ivlv~Eltg~~---~~~lpl~ia~~iA~~v~~ 429 (466)
T 3nd0_A 386 MGALVAATVRAPLTAILLTIEMTDNY---FVILPLLVTCLVASVVAE 429 (466)
T ss_dssp TSHHHHHHHSCHHHHHHHHHHTTCCC---TTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHCCh---HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998753 345566666666555543
No 73
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=99.05 E-value=8e-12 Score=143.57 Aligned_cols=177 Identities=14% Similarity=0.193 Sum_probs=97.7
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHhhcCccHHHHHHHhcCCCCCCCC--CCCcc----cccccccccccCCCeeE
Q 003966 530 LCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAH--PEPWM----RTLTVGELIDAKPPVIT 603 (783)
Q Consensus 530 ~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~~~~iy~~~l~~kg~p~l~~~--~~~~l----~~l~v~dvM~~~~~vv~ 603 (783)
.+.|..|+|+++.+.+|+|.+.+-.. -...+.+.+...+|..++... ++... +-.+++|+|.+ ++++
T Consensus 48 ~v~l~~eLt~~~~~~iP~vsa~md~~-----t~~~la~~ia~~gg~gii~~~~t~e~~~~~v~~v~~~~~im~~--~~~~ 120 (514)
T 1jcn_A 48 EVDLTSALTRKITLKTPLISSPMDTV-----TEADMAIAMALMGGIGFIHHNCTPEFQANEVRKVKNFEQGFIT--DPVV 120 (514)
T ss_dssp GCBCCEESSSSCEESSCEEECCCTTT-----CSHHHHHHHHHTTCEEEECCSSCHHHHHHHHHHHHTCCTTSCS--SCCC
T ss_pred eeEEEeeccCCeeEeceEEEEehhhh-----hhhhHHHHHHhcCCeeEEecCCCHHHHHHHHHhhhhhhhcccc--CCEE
Confidence 45566799999888777765421110 022344445555554444321 11111 12468899998 8889
Q ss_pred EcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhccchhHHHhhhhhhHH
Q 003966 604 LSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVE 683 (783)
Q Consensus 604 l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~~~~~~~~~~~~~~d 683 (783)
+++++++.++.+.|.+++++.+||+|++ ..+++++|+|+++|+......
T Consensus 121 v~~~~tv~ea~~~m~~~~~~~~pVvd~~--------~~~~~lvGiVt~~Dl~~~~~~----------------------- 169 (514)
T 1jcn_A 121 LSPSHTVGDVLEAKMRHGFSGIPITETG--------TMGSKLVGIVTSRDIDFLAEK----------------------- 169 (514)
T ss_dssp CCC-----------------CEESCC----------------CCEECTTTTC----------------------------
T ss_pred ECCCCCHHHHHHHHHhcCCCEEEEEeCC--------CcCCEEEEEEEHHHHHhhhhc-----------------------
Confidence 9999999999999999999999999872 002799999999998432100
Q ss_pred HhhhcCCccccccChhhhhhccCccccccC--CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhh
Q 003966 684 LAEREGKIEEVAVTSEEMEMYIDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQD 761 (783)
Q Consensus 684 ~~~~~~~i~di~~~~~~~~~~~dl~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~D 761 (783)
+...+++++|++ +++++++++++.+++++|.+.+.+++||||+ +|+++|+||++|
T Consensus 170 ------------------~~~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~-----~g~lvGiIt~~D 226 (514)
T 1jcn_A 170 ------------------DHTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVND-----CDELVAIIARTD 226 (514)
T ss_dssp -----------------------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESS-----SSCCC----CCC
T ss_pred ------------------cCCCCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECC-----CCeEEEEEEHHH
Confidence 011357788988 9999999999999999999999999999998 899999999999
Q ss_pred chhhHh
Q 003966 762 LRAFNI 767 (783)
Q Consensus 762 Ll~~~~ 767 (783)
+++...
T Consensus 227 ll~~~~ 232 (514)
T 1jcn_A 227 LKKNRD 232 (514)
T ss_dssp CSSCCC
T ss_pred HHHHhh
Confidence 998654
No 74
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=99.00 E-value=6.6e-09 Score=122.09 Aligned_cols=194 Identities=12% Similarity=0.086 Sum_probs=130.5
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----chh-hhHHHHHHHHHHHHhhh-hccccccccCCCC
Q 003966 327 RYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQK----GKM-HKLLLALSVSVFTSVCQ-YCLPFLADCKACD 400 (783)
Q Consensus 327 ~~~~~~l~~~i~lGv~~Gllg~~f~~l~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~-~~~p~~~~c~~~~ 400 (783)
+|....+.+.+++|++.|+++.+|.+...++.+++..+... .++ ..++.+++.+++.+.+. ++.|...
T Consensus 5 ~~~~r~~~~~~lvGi~~gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~------ 78 (632)
T 3org_A 5 MYLLRLVCFLTLLGVTAALFIFAVDLAVHGLEELRMKISRLAGRFAGYILYVVSGVALCLLSTFWCAVLSTEAE------ 78 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccC------
Confidence 45566778888999999999999999998888766433211 011 12334555565555443 5666551
Q ss_pred CCCCCCCCCCCCCCCcccccCCCCCchhhHHHhhcCcHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHhhcCccccc
Q 003966 401 PSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSG 480 (783)
Q Consensus 401 ~~~~~~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~l~~~~~~k~~lt~~t~g~g~~gG 480 (783)
| +| -.++-..+ +...+.++. ...+. .++.|++.+++|+|+|.+.|
T Consensus 79 ----------G-sG-----------Ip~v~~~l-~g~~~~~~~--------~~~~~----~~~~K~~~~~l~igsG~s~G 123 (632)
T 3org_A 79 ----------G-SG-----------LPQMKSIL-SGFYDKMRS--------ALELR----VLFAKALGLICAIGGGLPVG 123 (632)
T ss_dssp ----------B-CS-----------HHHHHHHT-TTTHHHHGG--------GGSHH----HHHHHHHHHHHHHHTTCSCB
T ss_pred ----------C-CC-----------HHHHHHHH-hCccccccc--------cccHH----HHHHHHHHHHHHHhcCCCcc
Confidence 1 11 11111111 111000111 11222 34579999999999999999
Q ss_pred cchHHHHHHHHHHHHHHH--Hhhc--cCCcchHHHHHHHhhhhhhhhhchhHHHHHHHHHHhCC-c--hhHHHHHHHHHH
Q 003966 481 LFLPIILMGSAYGRLLGM--AMGS--YTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNN-L--LLLPITMIVLLI 553 (783)
Q Consensus 481 ~f~P~l~iGa~~G~l~g~--~~~~--~~~~~~~~~alvGaaa~l~g~~r~pis~~vi~~ElTg~-~--~~l~pimia~~i 553 (783)
...|++.+||++|..+++ .+.. ....+...+..+|+||.+|++.++|++.+++.+|.... + ..+.|.++++++
T Consensus 124 rEGP~vqiGa~ig~~~~~~~~f~~~~~~~~~~r~ll~aGaaAG~aaaF~aPlaGvlFalE~~~~~~~~~~~~~~~~as~~ 203 (632)
T 3org_A 124 WEGPNVHIACIIAHQFYRLGVFKELCTDRALRLQTLAAACAVGLASSFGAPLGGVLYSIETIASFYLVQAFWKGVLSALS 203 (632)
T ss_dssp SHHHHHHHHHHHHHHHTTSHHHHHHHHSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTCSEEETTHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHHHHhCCccHhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999998887 5542 11234467889999999999999999999999998753 3 246777888889
Q ss_pred HHHHHhhc
Q 003966 554 AKTVGDSF 561 (783)
Q Consensus 554 a~~v~~~~ 561 (783)
|..+.+.+
T Consensus 204 a~~v~~~~ 211 (632)
T 3org_A 204 GAIVYELL 211 (632)
T ss_dssp HHHHTTC-
T ss_pred HHHHHHHh
Confidence 98887765
No 75
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=98.92 E-value=1.2e-10 Score=132.84 Aligned_cols=114 Identities=25% Similarity=0.331 Sum_probs=2.1
Q ss_pred ccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhhcc
Q 003966 590 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRR 669 (783)
Q Consensus 590 ~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~~~ 669 (783)
+.+|+|.. +++++++++++.++.+.|++++++.+||+|+ ++++|+|+.+|++. + +
T Consensus 94 ~~~~~m~~--~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~------------~~lvGivt~~Dl~~---~------~-- 148 (486)
T 2cu0_A 94 RAERLIVE--DVITIAPDETVDFALFLMEKHGIDGLPVVED------------EKVVGIITKKDIAA---R------E-- 148 (486)
T ss_dssp TCC-----------------------------------------------------------------------------
T ss_pred chhhcccc--CceEECCCCCHHHHHHHHHHcCCcEEEEEEC------------CEEEEEEEHHHhcc---C------C--
Confidence 45778988 9999999999999999999999999999986 68999999999853 0 0
Q ss_pred chhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCC
Q 003966 670 TEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAG 749 (783)
Q Consensus 670 ~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~ 749 (783)
..+++++|+++++++++++++.+++++|++.+.+++||||+
T Consensus 149 ----------------------------------~~~v~~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde----- 189 (486)
T 2cu0_A 149 ----------------------------------GKLVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDE----- 189 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------CCCHHHHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEec-----
Confidence 12467788888999999999999999999999999999998
Q ss_pred CCcEEEEEehhhchhhHh
Q 003966 750 VSPVVGILTRQDLRAFNI 767 (783)
Q Consensus 750 ~~~vvGIITr~DLl~~~~ 767 (783)
+++++|+||++|+++...
T Consensus 190 ~g~lvGiiT~~Dil~~~~ 207 (486)
T 2cu0_A 190 RGKLVGLITMSDLVARKK 207 (486)
T ss_dssp -----------------C
T ss_pred CCeEEEEEEHHHHHHhhh
Confidence 789999999999998643
No 76
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=98.39 E-value=6e-07 Score=73.89 Aligned_cols=45 Identities=13% Similarity=0.307 Sum_probs=41.8
Q ss_pred eeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHH
Q 003966 601 VITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLA 657 (783)
Q Consensus 601 vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~l 657 (783)
++++++++++.++.+.|.+++++++||+|+ ++++|+|+.+|+++.
T Consensus 2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~------------~~lvGIvT~~Di~~~ 46 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG------------DEILGVVTERDILDK 46 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEET------------TEEEEEEEHHHHHHH
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEEEC------------CEEEEEEEHHHHHHH
Confidence 679999999999999999999999999986 799999999999754
No 77
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=98.36 E-value=5.2e-07 Score=87.44 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=53.6
Q ss_pred cCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhH
Q 003966 705 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 766 (783)
Q Consensus 705 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~ 766 (783)
+.++++|++++++|.+++++.+|.++|++.+++++||+|+ +|+++|+||.+|+++..
T Consensus 18 ~~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~-----~g~lvGiit~~Dll~~~ 74 (170)
T 4esy_A 18 VPIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQ-----NGHLVGIITESDFLRGS 74 (170)
T ss_dssp SBGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECT-----TSCEEEEEEGGGGGGGT
T ss_pred CCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcC-----CccEEEEEEHHHHHHHH
Confidence 6789999999999999999999999999999999999998 89999999999998753
No 78
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=98.28 E-value=9.4e-07 Score=89.23 Aligned_cols=102 Identities=13% Similarity=0.123 Sum_probs=54.6
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhchhhhhh
Q 003966 588 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK 667 (783)
Q Consensus 588 ~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~~~f~~~~ 667 (783)
+.+++|+|.+ +++++++++++.++.+.|.+++++.+||+|++ ++++|+|+++|++..+.......
T Consensus 71 ~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----------g~lvGiit~~Dil~~~~~~~~~~-- 135 (213)
T 1vr9_A 71 DSSVFNKVSL--PDFFVHEEDNITHALLLFLEHQEPYLPVVDEE-----------MRLKGAVSLHDFLEALIEALAMD-- 135 (213)
T ss_dssp TSBSGGGCBC--TTCCEETTSBHHHHHHHHHHCCCSEEEEECTT-----------CBEEEEEEHHHHHHHHHHSCC----
T ss_pred CCcHHHHccC--CCEEECCCCcHHHHHHHHHHhCCCEEEEEcCC-----------CEEEEEEEHHHHHHHHHHHhcCC--
Confidence 3469999998 89999999999999999999999999999986 89999999999987654321000
Q ss_pred ccchhHHHhhhhhhHHHhhhcCCccccccChhhhhhccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeec
Q 003966 668 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK 744 (783)
Q Consensus 668 ~~~~~~~~~~~~~~~d~~~~~~~i~di~~~~~~~~~~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~ 744 (783)
+... .+. +.+.....++.++.++|.+.+.+.++|++.
T Consensus 136 ---------------~~~~-------------------~l~------~~~~~~~~~l~~~~~~l~~~~~~~l~V~~~ 172 (213)
T 1vr9_A 136 ---------------VPGI-------------------RFS------VLLEDKPGELRKVVDALALSNINILSVITT 172 (213)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred ---------------CCcE-------------------EEE------EEeCCCCccHHHHHHHHHHCCCcEEEEEEE
Confidence 0000 000 011123345999999999999999999865
No 79
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=98.27 E-value=1.3e-06 Score=71.89 Aligned_cols=48 Identities=13% Similarity=0.190 Sum_probs=43.5
Q ss_pred CeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHhh
Q 003966 715 PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 768 (783)
Q Consensus 715 p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~~ 768 (783)
+++|.+++++.+|.++|++.+++++||+| +++++||||.+|+++....
T Consensus 2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d------~~~lvGIvT~~Di~~~~~~ 49 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVME------GDEILGVVTERDILDKVVA 49 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEE------TTEEEEEEEHHHHHHHTTT
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEEE------CCEEEEEEEHHHHHHHHHh
Confidence 57899999999999999999999999997 5799999999999876543
No 80
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=98.11 E-value=5.8e-06 Score=67.24 Aligned_cols=48 Identities=13% Similarity=0.284 Sum_probs=43.4
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHH
Q 003966 600 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALK 659 (783)
Q Consensus 600 ~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~ 659 (783)
+++++++++++.++++.|++++++.+||+|+ ++++|+|+++|+++.+.
T Consensus 1 ~~~~v~~~~~~~~a~~~m~~~~~~~~pV~d~------------~~l~Givt~~dl~~~~~ 48 (70)
T 3fio_A 1 KAIVVQPKDTVDRVAKILSRNKAGSAVVMEG------------DEILGVVTERDILDKVV 48 (70)
T ss_dssp CEEEECTTCBHHHHHHHHHHTTCSEEEEEET------------TEEEEEEEHHHHHHHTT
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC------------CEEEEEEEHHHHHHHHH
Confidence 4678999999999999999999999999986 79999999999987553
No 81
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=98.09 E-value=3.6e-06 Score=86.63 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=55.4
Q ss_pred cCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHhhh
Q 003966 705 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT 769 (783)
Q Consensus 705 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~~~ 769 (783)
..++++|++++.++++++++.+|+++|++.+++++||+|+ +|+++|+||.+|+++.+...
T Consensus 7 ~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~-----~~~l~Giit~~di~~~~~~~ 66 (245)
T 3l2b_A 7 LKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADG-----NNHLLGMLSTSNITATYMDI 66 (245)
T ss_dssp CBGGGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECT-----TCBEEEEEEHHHHHHHHHCC
T ss_pred CcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC-----CCEEEEEEEHHHHHHHHHHh
Confidence 4578999999999999999999999999999999999997 78999999999999877643
No 82
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=98.06 E-value=3.6e-06 Score=81.73 Aligned_cols=59 Identities=14% Similarity=0.109 Sum_probs=52.8
Q ss_pred cCcccccc--CCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCC-CcEEEEEehhhchhhHhh
Q 003966 705 IDLHPLTN--TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV-SPVVGILTRQDLRAFNIL 768 (783)
Q Consensus 705 ~dl~~im~--~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~-~~vvGIITr~DLl~~~~~ 768 (783)
..++++|. +++.++++++++.+|.++|++.+.+++||+|+ + ++++|+||.+|+++....
T Consensus 42 ~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~-----~~~~lvGivt~~dl~~~~~~ 103 (172)
T 3lhh_A 42 RTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRN-----NVDDMVGIISAKQLLSESIA 103 (172)
T ss_dssp -CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESS-----STTSEEEEEEHHHHHHHHHT
T ss_pred CCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeC-----CCCeEEEEEEHHHHHHHHhh
Confidence 45789998 67889999999999999999999999999987 6 899999999999987653
No 83
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=98.06 E-value=4.8e-06 Score=86.15 Aligned_cols=62 Identities=11% Similarity=0.230 Sum_probs=54.7
Q ss_pred cCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHhhh
Q 003966 705 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT 769 (783)
Q Consensus 705 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~~~ 769 (783)
+.++++|.+++++|.+++++.++.++|.+.+++++||||+ .++++++|+|||+||++.....
T Consensus 13 ~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~---~~~~~LvGiIt~~dl~~~l~~~ 74 (250)
T 2d4z_A 13 IQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDT---PDTNTLLGSIDRTEVEGLLQRR 74 (250)
T ss_dssp CBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESC---TTTCBEEEEEEHHHHHHHHHHH
T ss_pred CChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEec---CCCCeEEEEEEHHHHHHHHHHh
Confidence 5678999999999999999999999999999999999986 2236899999999999865543
No 84
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=98.05 E-value=5.9e-06 Score=77.80 Aligned_cols=60 Identities=18% Similarity=0.247 Sum_probs=54.0
Q ss_pred cCccccccC--CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCC-CcEEEEEehhhchhhHhhh
Q 003966 705 IDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV-SPVVGILTRQDLRAFNILT 769 (783)
Q Consensus 705 ~dl~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~-~~vvGIITr~DLl~~~~~~ 769 (783)
..++++|.+ ++.++++++++.++.++|++.+.+++||+|+ + ++++|+||++|+++....+
T Consensus 23 ~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~-----~~~~lvGivt~~dl~~~~~~~ 85 (148)
T 3lv9_A 23 KKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRK-----NKDDILGFVHIRDLYNQKINE 85 (148)
T ss_dssp CBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESS-----STTSEEEEEEHHHHHHHHHHH
T ss_pred CCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC-----CCCcEEEEEEHHHHHHHHhcC
Confidence 457889988 8999999999999999999999999999987 6 7999999999999875443
No 85
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=98.04 E-value=5.9e-06 Score=77.01 Aligned_cols=60 Identities=10% Similarity=0.144 Sum_probs=54.0
Q ss_pred ccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCC--cEEEEEehhhchhhHhh
Q 003966 704 YIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVS--PVVGILTRQDLRAFNIL 768 (783)
Q Consensus 704 ~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~--~vvGIITr~DLl~~~~~ 768 (783)
.+.++++|++++.++++++++.++.++|++.+.+++||+|+ ++ +++|+||++|+++....
T Consensus 4 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-----~~~~~~~Givt~~dl~~~~~~ 65 (141)
T 2rih_A 4 AIRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTAR-----DNPKRPVAVVSERDILRAVAQ 65 (141)
T ss_dssp -CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEET-----TEEEEEEEEEEHHHHHHHHHT
T ss_pred ceEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcC-----CCcceeEEEEEHHHHHHHHhc
Confidence 35678999999999999999999999999999999999997 67 99999999999986543
No 86
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=98.03 E-value=6.4e-06 Score=66.96 Aligned_cols=48 Identities=13% Similarity=0.190 Sum_probs=43.8
Q ss_pred CeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHhh
Q 003966 715 PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 768 (783)
Q Consensus 715 p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~~ 768 (783)
+.++++++++.++.++|++.+.+++||+| +++++|+||++|+++....
T Consensus 2 ~~~v~~~~~~~~a~~~m~~~~~~~~pV~d------~~~l~Givt~~dl~~~~~~ 49 (70)
T 3fio_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVME------GDEILGVVTERDILDKVVA 49 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEE------TTEEEEEEEHHHHHHHTTT
T ss_pred CeEECCCCcHHHHHHHHHHcCCCEEEEEE------CCEEEEEEEHHHHHHHHHH
Confidence 56899999999999999999999999998 4789999999999987644
No 87
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=98.03 E-value=5.1e-06 Score=79.54 Aligned_cols=60 Identities=22% Similarity=0.390 Sum_probs=54.5
Q ss_pred ccCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHhh
Q 003966 704 YIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 768 (783)
Q Consensus 704 ~~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~~ 768 (783)
.+.++++|++++.++.+++++.+|.++|++.+.+++||+|+ +++++|+||++|+++....
T Consensus 4 ~~~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~-----~~~lvGivt~~dl~~~~~~ 63 (160)
T 2o16_A 4 MIKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA-----NKKLLGIVSQRDLLAAQES 63 (160)
T ss_dssp CCBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-----TCBEEEEEEHHHHHHHHHH
T ss_pred cCcHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-----CCcEEEEEeHHHHHHHHHH
Confidence 35678999999999999999999999999999999999997 7899999999999986543
No 88
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=98.00 E-value=6.8e-06 Score=77.50 Aligned_cols=59 Identities=17% Similarity=0.173 Sum_probs=54.0
Q ss_pred cCccccccC--CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHhh
Q 003966 705 IDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 768 (783)
Q Consensus 705 ~dl~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~~ 768 (783)
..++++|++ ++.++++++++.++.++|.+.+.+++||+|+ +++++|+||++|+++....
T Consensus 28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~-----~~~~~Givt~~dl~~~~~~ 88 (149)
T 3k2v_A 28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDD-----DMNIIGIFTDGDLRRVFDT 88 (149)
T ss_dssp SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECT-----TCBEEEEEEHHHHHHHHCS
T ss_pred cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECC-----CCcEEEEecHHHHHHHHhc
Confidence 468899998 9999999999999999999999999999997 7899999999999986543
No 89
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=97.99 E-value=1.2e-05 Score=76.70 Aligned_cols=58 Identities=17% Similarity=0.231 Sum_probs=51.8
Q ss_pred cCccccccC--CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCC-CcEEEEEehhhchhhHh
Q 003966 705 IDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV-SPVVGILTRQDLRAFNI 767 (783)
Q Consensus 705 ~dl~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~-~~vvGIITr~DLl~~~~ 767 (783)
..++++|.+ ++.++++++++.++.++|++.+.+++||+|+ + ++++|+||.+|+++...
T Consensus 38 ~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~-----~~~~lvGivt~~dl~~~~~ 98 (156)
T 3oi8_A 38 LEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGE-----DKDEVLGILHAKDLLKYMF 98 (156)
T ss_dssp CBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS-----STTCEEEEEEGGGGGGGSS
T ss_pred CCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC-----CCCcEEEEEEHHHHHHHHH
Confidence 457889986 7889999999999999999999999999987 5 49999999999998643
No 90
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=97.99 E-value=5.3e-06 Score=75.04 Aligned_cols=57 Identities=21% Similarity=0.328 Sum_probs=52.2
Q ss_pred ccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHhh
Q 003966 707 LHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 768 (783)
Q Consensus 707 l~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~~ 768 (783)
++++|++++.++++++++.++.++|++.+.+++||+|+ +++++|+||++|+++....
T Consensus 3 v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-----~~~~~G~vt~~dl~~~~~~ 59 (122)
T 3kpb_A 3 VKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDE-----HGKLVGIITSWDIAKALAQ 59 (122)
T ss_dssp HHHHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECT-----TSBEEEEECHHHHHHHHHT
T ss_pred hHHhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECC-----CCCEEEEEEHHHHHHHHHh
Confidence 56788899999999999999999999999999999997 7899999999999986543
No 91
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=97.98 E-value=9.2e-06 Score=75.23 Aligned_cols=56 Identities=23% Similarity=0.256 Sum_probs=51.8
Q ss_pred cCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhh
Q 003966 705 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 765 (783)
Q Consensus 705 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~ 765 (783)
..++++|++++.++++++++.++.++|.+.+.+++||+|+ +++++|+||++|+++.
T Consensus 7 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-----~~~~~Givt~~dl~~~ 62 (138)
T 2yzi_A 7 APIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIND-----DGNVVGFFTKSDIIRR 62 (138)
T ss_dssp SBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECT-----TSCEEEEEEHHHHHHH
T ss_pred hhHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-----CCcEEEEEeHHHHHHH
Confidence 4578899999999999999999999999999999999997 7899999999999853
No 92
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=97.97 E-value=6.3e-06 Score=75.50 Aligned_cols=57 Identities=14% Similarity=0.203 Sum_probs=50.5
Q ss_pred CccccccCC--CeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCC-CcEEEEEehhhchhhHh
Q 003966 706 DLHPLTNTT--PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV-SPVVGILTRQDLRAFNI 767 (783)
Q Consensus 706 dl~~im~~~--p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~-~~vvGIITr~DLl~~~~ 767 (783)
.++++|.+. +.++++++++.+|.++|++.+.+++||+|+ + ++++|+||.+|+++...
T Consensus 4 ~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~-----~~~~~vGivt~~dl~~~~~ 63 (127)
T 3nqr_A 4 RVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE-----DKDHIEGILMAKDLLPFMR 63 (127)
T ss_dssp BHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS-----STTCEEEEEEGGGGGGGGS
T ss_pred CHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcC-----CCCcEEEEEEHHHHHHHHh
Confidence 456778754 889999999999999999999999999997 6 79999999999997643
No 93
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=97.96 E-value=7.9e-06 Score=75.11 Aligned_cols=58 Identities=12% Similarity=0.138 Sum_probs=51.0
Q ss_pred cCcccccc--CCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCC-CcEEEEEehhhchhhHh
Q 003966 705 IDLHPLTN--TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV-SPVVGILTRQDLRAFNI 767 (783)
Q Consensus 705 ~dl~~im~--~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~-~~vvGIITr~DLl~~~~ 767 (783)
..++++|+ +++.++++++++.+|.++|++.+.+++||+|+ + ++++|+||.+|+++...
T Consensus 5 ~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~-----~~~~~~Givt~~dl~~~~~ 65 (129)
T 3jtf_A 5 RTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYED-----DRDNIIGILLAKDLLRYML 65 (129)
T ss_dssp CBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESS-----STTCEEEEEEGGGGGGGGT
T ss_pred CCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcC-----CCCcEEEEEEHHHHHhHhc
Confidence 34677887 56789999999999999999999999999986 5 89999999999998643
No 94
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=97.93 E-value=1.2e-05 Score=74.27 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=52.2
Q ss_pred cCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhc-hhhH
Q 003966 705 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL-RAFN 766 (783)
Q Consensus 705 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DL-l~~~ 766 (783)
..++++|++++.++++++++.++.++|++.+.+++||+|+ +++++|+||++|+ ++..
T Consensus 8 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-----~~~~~Givt~~dl~~~~~ 65 (138)
T 2p9m_A 8 IKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDD-----ENKVIGIVTTTDIGYNLI 65 (138)
T ss_dssp CBGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECT-----TCBEEEEEEHHHHHHHHT
T ss_pred CCHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECC-----CCeEEEEEEHHHHHHHHH
Confidence 4578899999999999999999999999999999999997 7899999999999 7643
No 95
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=97.91 E-value=1e-05 Score=74.08 Aligned_cols=57 Identities=16% Similarity=0.026 Sum_probs=52.3
Q ss_pred cCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHh
Q 003966 705 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 767 (783)
Q Consensus 705 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~ 767 (783)
+.++++|++++.++++++++.+|.++|++.+.+++||+| +++++|+||++|+++...
T Consensus 5 ~~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd------~~~~~Givt~~dl~~~~~ 61 (128)
T 3gby_A 5 VTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLD------GERYLGMVHLSRLLEGRK 61 (128)
T ss_dssp CBGGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEE------TTEEEEEEEHHHHHTTCS
T ss_pred eEHHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEE------CCEEEEEEEHHHHHHHHh
Confidence 567899999999999999999999999999999999998 378999999999987544
No 96
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=97.91 E-value=1e-05 Score=75.13 Aligned_cols=57 Identities=11% Similarity=0.174 Sum_probs=50.6
Q ss_pred Ccccccc--CCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCC-CcEEEEEehhhchhhHh
Q 003966 706 DLHPLTN--TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV-SPVVGILTRQDLRAFNI 767 (783)
Q Consensus 706 dl~~im~--~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~-~~vvGIITr~DLl~~~~ 767 (783)
.++++|+ +++.++++++++.+|.++|++.+.+++||+|+ + ++++|+||.+|+++...
T Consensus 4 ~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~-----~~~~~vGivt~~dl~~~~~ 63 (136)
T 3lfr_A 4 QVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGE-----SHDDVLGVLLAKDLLPLIL 63 (136)
T ss_dssp BHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS-----STTCEEEEEEGGGGGGGGG
T ss_pred ChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcC-----CCCcEEEEEEHHHHHHHHH
Confidence 4567787 56789999999999999999999999999987 5 79999999999998654
No 97
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=97.89 E-value=1.5e-05 Score=76.05 Aligned_cols=57 Identities=26% Similarity=0.413 Sum_probs=51.9
Q ss_pred cCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHh
Q 003966 705 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 767 (783)
Q Consensus 705 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~ 767 (783)
+.++++|++ ++++.+++++.+|.++|.+.+.+++||+|+ +++++|+||++|+++...
T Consensus 17 ~~v~~im~~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~-----~~~~~Givt~~dl~~~~~ 73 (159)
T 3fv6_A 17 LQVKDFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDR-----DAVLVGVLSRKDLLRASI 73 (159)
T ss_dssp CBGGGSCBC-CCEEETTSBHHHHHHHHHHHTCSEEEEECT-----TSCEEEEEEHHHHHHHHT
T ss_pred CCHHHHcCC-CEEECCCCcHHHHHHHHHHCCCCEEEEEcC-----CCcEEEEEeHHHHHHHhh
Confidence 567889986 679999999999999999999999999997 789999999999998653
No 98
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=97.85 E-value=9.9e-06 Score=76.27 Aligned_cols=58 Identities=12% Similarity=0.122 Sum_probs=52.0
Q ss_pred cCcccccc--CCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHh
Q 003966 705 IDLHPLTN--TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 767 (783)
Q Consensus 705 ~dl~~im~--~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~ 767 (783)
+.++++|+ +++.++++++++.+|.++|++.+.+++||+|+ +++++|+||++|+++...
T Consensus 15 ~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~-----~~~~~Givt~~dl~~~~~ 74 (150)
T 3lqn_A 15 IFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDP-----MYKLHGLISTAMILDGIL 74 (150)
T ss_dssp CBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECT-----TCBEEEEEEHHHHHHHTB
T ss_pred CChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECC-----CCCEEEEEEHHHHHHHHH
Confidence 45678888 45889999999999999999999999999997 789999999999998654
No 99
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=97.83 E-value=1.8e-05 Score=71.67 Aligned_cols=56 Identities=18% Similarity=0.089 Sum_probs=50.4
Q ss_pred CccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHh
Q 003966 706 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 767 (783)
Q Consensus 706 dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~ 767 (783)
.++++|++++.++++++++.++.++|++.+.+++||+| +++++|+||++|+++...
T Consensus 2 ~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd------~~~~~G~it~~dl~~~~~ 57 (125)
T 1pbj_A 2 RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK------EGVRVGIVTTWDVLEAIA 57 (125)
T ss_dssp CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE------TTEEEEEEEHHHHHHHHH
T ss_pred CHHHhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe------CCeeEEEEeHHHHHHHHh
Confidence 35678889999999999999999999999999999998 478999999999987544
No 100
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=97.82 E-value=1.7e-05 Score=74.32 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=51.3
Q ss_pred cCccccccC--CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhh
Q 003966 705 IDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 765 (783)
Q Consensus 705 ~dl~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~ 765 (783)
+.++++|.+ ++.++.+++++.+|.++|++.+.+++||+|+ +++++|+||++|+++.
T Consensus 5 ~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-----~~~~~G~vt~~dl~~~ 62 (152)
T 4gqw_A 5 YTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDE-----DWKLVGLVSDYDLLAL 62 (152)
T ss_dssp SBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECT-----TCBEEEEEEHHHHTTC
T ss_pred EEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeC-----CCeEEEEEEHHHHHHh
Confidence 467888988 7999999999999999999999999999997 7899999999999853
No 101
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=97.81 E-value=1.6e-05 Score=75.32 Aligned_cols=58 Identities=17% Similarity=0.277 Sum_probs=51.9
Q ss_pred Ccccccc--CCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHhh
Q 003966 706 DLHPLTN--TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 768 (783)
Q Consensus 706 dl~~im~--~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~~ 768 (783)
.++++|. +++.++++++++.+|.++|.+.+.+++||+|+ +|+++|+||++|+++....
T Consensus 16 ~v~dim~p~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~-----~~~~~Giit~~dl~~~~~~ 75 (156)
T 3ctu_A 16 QEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTD-----EKQFVGTIGLRDIMAYQME 75 (156)
T ss_dssp TGGGGEEEGGGCCCEETTSBHHHHHHHHTTCSSSEEEEECC------CBEEEEEEHHHHHHHHHH
T ss_pred HHHHHcCcccCceEECCCCCHHHHHHHHHHCCCceEeEECC-----CCEEEEEEcHHHHHHHHHh
Confidence 5678888 67899999999999999999999999999997 7899999999999987654
No 102
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=97.81 E-value=1.1e-05 Score=74.09 Aligned_cols=59 Identities=12% Similarity=0.243 Sum_probs=51.1
Q ss_pred cCccccccC--CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCC-CcEEEEEehhhchhhHhh
Q 003966 705 IDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV-SPVVGILTRQDLRAFNIL 768 (783)
Q Consensus 705 ~dl~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~-~~vvGIITr~DLl~~~~~ 768 (783)
..++++|++ ...++++++++.+|.++|++.+.+++||+|+ + ++++|+||++|+++....
T Consensus 6 ~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~-----~~~~~~Givt~~dl~~~~~~ 67 (130)
T 3i8n_A 6 VPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSE-----QKDNIIGFVHRLELFKMQQS 67 (130)
T ss_dssp -CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESS-----STTCEEEECCHHHHHHHHHT
T ss_pred CCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeC-----CCCcEEEEEEHHHHHHHHhc
Confidence 457888984 4558999999999999999999999999997 5 899999999999987543
No 103
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=97.80 E-value=1.3e-05 Score=73.61 Aligned_cols=55 Identities=18% Similarity=0.197 Sum_probs=50.8
Q ss_pred cCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchh
Q 003966 705 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRA 764 (783)
Q Consensus 705 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~ 764 (783)
..++++|.+++.++++++++.++.++|.+.+.+++||+|+ +++++|+||++|+++
T Consensus 8 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-----~~~~~Givt~~dl~~ 62 (133)
T 1y5h_A 8 TTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGD-----DDRLHGMLTDRDIVI 62 (133)
T ss_dssp CCHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECG-----GGBEEEEEEHHHHHH
T ss_pred cCHHHHhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECC-----CCeEEEEEeHHHHHH
Confidence 4567889889999999999999999999999999999987 789999999999984
No 104
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=97.80 E-value=1.5e-05 Score=75.92 Aligned_cols=58 Identities=9% Similarity=0.104 Sum_probs=52.5
Q ss_pred cCccccccC--CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHh
Q 003966 705 IDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 767 (783)
Q Consensus 705 ~dl~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~ 767 (783)
..++++|++ ++.++++++++.+|.++|++.+.+++||+|+ +++++|+||++|+++...
T Consensus 14 ~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~-----~~~lvGivt~~dl~~~~~ 73 (159)
T 1yav_A 14 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDP-----SYRLHGLIGTNMIMNSIF 73 (159)
T ss_dssp CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECT-----TCBEEEEEEHHHHHHHHB
T ss_pred hhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECC-----CCCEEEEeEHHHHHHHhh
Confidence 456788887 8999999999999999999999999999997 789999999999988654
No 105
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=97.80 E-value=1.9e-05 Score=74.75 Aligned_cols=58 Identities=10% Similarity=0.187 Sum_probs=52.7
Q ss_pred cCccccccC--CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHh
Q 003966 705 IDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 767 (783)
Q Consensus 705 ~dl~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~ 767 (783)
..++++|.+ ++.++++++++.+|.++|++.+.+++||+|+ +++++|+||++|+++...
T Consensus 11 ~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~-----~~~~~Givt~~dl~~~~~ 70 (157)
T 2emq_A 11 MTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDT-----SYKLHGLISMTMMMDAIL 70 (157)
T ss_dssp CBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECT-----TCCEEEEEEHHHHHHHSB
T ss_pred CcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcC-----CCCEEEEeeHHHHHHHHh
Confidence 567889986 8899999999999999999999999999997 789999999999987643
No 106
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=97.80 E-value=1.5e-05 Score=73.48 Aligned_cols=59 Identities=2% Similarity=-0.011 Sum_probs=50.2
Q ss_pred Ccccccc--CCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHhh
Q 003966 706 DLHPLTN--TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 768 (783)
Q Consensus 706 dl~~im~--~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~~ 768 (783)
.++++|. +++.++++++++.+|.++|++.+.+++||+++ ++++++|+||.+|+++....
T Consensus 3 ~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~----~~~~lvGivt~~dl~~~~~~ 63 (130)
T 3hf7_A 3 SVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRD----SLDDAISMLRVREAYRLMTE 63 (130)
T ss_dssp BHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESS----SGGGEEEEEEHHHHHHHHTS
T ss_pred CHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcC----CCCcEEEEEEHHHHHHHHhc
Confidence 4567785 46789999999999999999999999999964 14799999999999986543
No 107
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=97.80 E-value=1.5e-05 Score=76.56 Aligned_cols=60 Identities=20% Similarity=0.135 Sum_probs=53.3
Q ss_pred ccCccccccC---CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHhh
Q 003966 704 YIDLHPLTNT---TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 768 (783)
Q Consensus 704 ~~dl~~im~~---~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~~ 768 (783)
.+.++++|++ ++.++.+++++.+|.++|++.+.+++||+|+ +++++|+||++|+++....
T Consensus 23 ~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~-----~~~~~Givt~~dl~~~~~~ 85 (165)
T 3fhm_A 23 ATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDA-----DGVVLGIFTERDLVKAVAG 85 (165)
T ss_dssp SCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECT-----TSCEEEEEEHHHHHHHHHH
T ss_pred hcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcC-----CCeEEEEEEHHHHHHHHHh
Confidence 3556788875 6899999999999999999999999999997 7899999999999986554
No 108
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=97.79 E-value=2.7e-05 Score=76.28 Aligned_cols=58 Identities=21% Similarity=0.198 Sum_probs=53.5
Q ss_pred cCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHh
Q 003966 705 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 767 (783)
Q Consensus 705 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~ 767 (783)
+.++++|++++.++.+++++.+|.++|.+.+.+++||+|+ +++++|+||++|+++...
T Consensus 9 ~~v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~-----~g~~vGivt~~dl~~~~~ 66 (184)
T 1pvm_A 9 MRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDD-----NGNDVGLLSERSIIKRFI 66 (184)
T ss_dssp CBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECT-----TSCEEEEEEHHHHHHHTG
T ss_pred cCHHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-----CCcEEEEEeHHHHHHHHh
Confidence 5678999999999999999999999999999999999997 789999999999988644
No 109
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=97.79 E-value=1.9e-05 Score=75.42 Aligned_cols=57 Identities=18% Similarity=0.277 Sum_probs=49.4
Q ss_pred ccccccC--CCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHhh
Q 003966 707 LHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 768 (783)
Q Consensus 707 l~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~~ 768 (783)
+.++|.+ +..+|.+++|+.+|+++|.+.+.+++||+|+ +++++|+||.+|+++....
T Consensus 17 ~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~-----~~~lvGiit~~Di~~~~~~ 75 (156)
T 3k6e_A 17 EETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTD-----EKQFVGTIGLRDIMAYQME 75 (156)
T ss_dssp GGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC------CBEEEEEEHHHHHHHHHH
T ss_pred HHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcC-----CCcEEEEEEecchhhhhhh
Confidence 4566653 6789999999999999999999999999997 7899999999999886654
No 110
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=97.77 E-value=3.6e-05 Score=70.63 Aligned_cols=58 Identities=16% Similarity=0.149 Sum_probs=52.0
Q ss_pred cCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHhh
Q 003966 705 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 768 (783)
Q Consensus 705 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~~ 768 (783)
..++++|++++.++++++++.+|.++|++.+.+++||+| +++++|+||++|+++....
T Consensus 4 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd------~~~~~Givt~~dl~~~~~~ 61 (133)
T 2ef7_A 4 EIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD------GNKPVGIITERDIVKAIGK 61 (133)
T ss_dssp CBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE------TTEEEEEEEHHHHHHHHHT
T ss_pred ccHHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE------CCEEEEEEcHHHHHHHHhc
Confidence 457889999999999999999999999999999999998 4789999999999876543
No 111
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=97.75 E-value=4.2e-05 Score=71.01 Aligned_cols=54 Identities=7% Similarity=0.090 Sum_probs=49.8
Q ss_pred cccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHhh
Q 003966 710 LTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 768 (783)
Q Consensus 710 im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~~ 768 (783)
+|.+++.++.+++++.+|.++|.+.+.+++||+|+ +++++|+||++|+++....
T Consensus 16 ~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-----~~~~~Givt~~dl~~~~~~ 69 (144)
T 2nyc_A 16 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE-----NGYLINVYEAYDVLGLIKG 69 (144)
T ss_dssp CBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-----TCBEEEEEEHHHHHHHHHT
T ss_pred CCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcC-----CCcEEEEEcHHHHHHHhcc
Confidence 78888999999999999999999999999999997 7899999999999986543
No 112
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=97.74 E-value=2.1e-05 Score=76.67 Aligned_cols=60 Identities=20% Similarity=0.156 Sum_probs=52.9
Q ss_pred ccCccccccCC----Ceee--cCCCCHHHHHHHHHHcCCCEEEEe--eccccCCCCcEEEEEehhhchhhHhh
Q 003966 704 YIDLHPLTNTT----PYTV--IESMSVAKAMVLFRQVGLRHLLVV--PKYEAAGVSPVVGILTRQDLRAFNIL 768 (783)
Q Consensus 704 ~~dl~~im~~~----p~tV--~~~~sL~~a~~lf~~~glr~lpVV--d~~~~~~~~~vvGIITr~DLl~~~~~ 768 (783)
...++++|.+. ++++ .+++++.+|.++|++.+.+++||+ |+ +++++|+||++|+++....
T Consensus 10 ~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~-----~~~lvGiit~~dl~~~~~~ 77 (185)
T 2j9l_A 10 KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRE-----SQRLVGFVLRRDLIISIEN 77 (185)
T ss_dssp CCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTT-----TCBEEEEEEHHHHHHHHHH
T ss_pred cCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECC-----CCeEEEEEEHHHHHHHHHh
Confidence 45677888876 7889 999999999999999999999999 66 7899999999999987654
No 113
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=97.73 E-value=2.6e-05 Score=74.28 Aligned_cols=60 Identities=13% Similarity=0.192 Sum_probs=52.6
Q ss_pred cCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHh
Q 003966 705 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 767 (783)
Q Consensus 705 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~ 767 (783)
..++++|++++.++++++++.+|.++|.+.+.+++||+|+ .++++++|+||++|+++...
T Consensus 13 ~~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~---~~~~~~~Givt~~dl~~~~~ 72 (164)
T 2pfi_A 13 VRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVES---TESQILVGIVQRAQLVQALQ 72 (164)
T ss_dssp CBHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESC---TTTCBEEEEEEHHHHHHHHH
T ss_pred CCHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEec---CCCCEEEEEEEHHHHHHHHH
Confidence 4567889999999999999999999999999999999983 11589999999999987654
No 114
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=97.71 E-value=3e-05 Score=73.72 Aligned_cols=57 Identities=16% Similarity=0.170 Sum_probs=52.0
Q ss_pred cCccccccCCCeeecCCCCHHHHHHHHHHcCCCE-EEEeeccccCCCCcEEEEEehhhchhhHh
Q 003966 705 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRH-LLVVPKYEAAGVSPVVGILTRQDLRAFNI 767 (783)
Q Consensus 705 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~-lpVVd~~~~~~~~~vvGIITr~DLl~~~~ 767 (783)
..++++|.+++.++.+++++.+|.++|++.+.+. +||+|+ + +++|+||++|+++...
T Consensus 16 ~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~-----~-~~vGivt~~dl~~~~~ 73 (157)
T 1o50_A 16 KDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD-----N-KLVGMIPVMHLLKVSG 73 (157)
T ss_dssp HHHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEET-----T-EEEEEEEHHHHHHHHH
T ss_pred ccHhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEEC-----C-EEEEEEEHHHHHHHHh
Confidence 3467899999999999999999999999999999 999997 6 9999999999998643
No 115
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=97.69 E-value=4.8e-05 Score=73.96 Aligned_cols=59 Identities=20% Similarity=0.052 Sum_probs=52.1
Q ss_pred cCcccccc--CCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCC-CcEEEEEehhhchhhHhh
Q 003966 705 IDLHPLTN--TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV-SPVVGILTRQDLRAFNIL 768 (783)
Q Consensus 705 ~dl~~im~--~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~-~~vvGIITr~DLl~~~~~ 768 (783)
..++++|. +.++++++++++.+++++|++.+.+++||+|+ + ++++|+||.+|+++....
T Consensus 36 ~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~-----~~~~lvGivt~~Dl~~~~~~ 97 (173)
T 3ocm_A 36 RSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRG-----SLDEVVGIGRAKDLVADLIT 97 (173)
T ss_dssp SCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESS-----STTSEEEEEEHHHHHHHHHH
T ss_pred CCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeC-----CCCCEEEEEEHHHHHHHHhc
Confidence 45788896 46789999999999999999999999999986 5 799999999999987543
No 116
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=97.61 E-value=6.2e-05 Score=72.79 Aligned_cols=61 Identities=21% Similarity=0.368 Sum_probs=55.6
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003966 587 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 660 (783)
Q Consensus 587 ~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~ 660 (783)
.+.+++++|.+ +++++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|+++.+.+
T Consensus 96 ~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----------g~~vGiit~~dil~~~~~ 156 (180)
T 3sl7_A 96 YGKVVGDLMTP--SPLVVRDSTNLEDAARLLLETKFRRLPVVDAD-----------GKLIGILTRGNVVRAALQ 156 (180)
T ss_dssp TTCBHHHHSEE--SCCCEETTSBHHHHHHHHTTSTTCEEEEECTT-----------CBEEEEEEHHHHHHHHHH
T ss_pred ccccHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCEEEEECCC-----------CeEEEEEEHHHHHHHHHH
Confidence 35679999998 88999999999999999999999999999976 899999999999987754
No 117
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=97.61 E-value=7.8e-05 Score=68.64 Aligned_cols=60 Identities=18% Similarity=0.236 Sum_probs=54.6
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003966 587 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 660 (783)
Q Consensus 587 ~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~ 660 (783)
.+.+++|+|.+ ++.++++++++.++++.|.+++.+.+||+| + ++++|+|+++|++..+.+
T Consensus 72 ~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~-----------g~~~Giit~~dll~~~~~ 131 (135)
T 2rc3_A 72 KDTQVKEIMTR--QVAYVDLNNTNEDCMALITEMRVRHLPVLD-D-----------GKVIGLLSIGDLVKDAIS 131 (135)
T ss_dssp GGSBGGGTSBC--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-T-----------TEEEEEEEHHHHHHHHHC
T ss_pred ccCCHHHhccC--CCeEECCCCcHHHHHHHHHHhCCCEEEEEe-C-----------CEEEEEEEHHHHHHHHHh
Confidence 46789999998 899999999999999999999999999999 5 899999999999886643
No 118
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=97.60 E-value=9.3e-05 Score=74.06 Aligned_cols=60 Identities=13% Similarity=0.221 Sum_probs=55.5
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003966 588 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 660 (783)
Q Consensus 588 ~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~ 660 (783)
+.+++++|.+ +++++++++++.++.+.|++++.+.+||||++ |+++|+|+++|++..+..
T Consensus 115 ~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~-----------g~lvGiIT~~Dil~~i~~ 174 (205)
T 3kxr_A 115 HEPLISLLSE--DSRALTANTTLLDAAEAIEHSREIELPVIDDA-----------GELIGRVTLRAATALVRE 174 (205)
T ss_dssp TSBGGGGCCS--SCCCEETTSCHHHHHHHHHTSSCSEEEEECTT-----------SBEEEEEEHHHHHHHHHH
T ss_pred cchHHHHhcC--CCeEECCCCCHHHHHHHHHhcCCCEEEEEcCC-----------CeEEEEEEHHHHHHHHHH
Confidence 4679999998 89999999999999999999999999999987 899999999999987754
No 119
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=97.60 E-value=7.3e-05 Score=70.58 Aligned_cols=56 Identities=21% Similarity=0.188 Sum_probs=49.5
Q ss_pred CccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchhhHhh
Q 003966 706 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 768 (783)
Q Consensus 706 dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~~~~~ 768 (783)
.+.++ +++.++.+++++.+|.++|++.+.+.+||+|+ +|+++|+||++|+++....
T Consensus 24 ~v~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~-----~~~~vGivt~~dl~~~~~~ 79 (152)
T 2uv4_A 24 QIGTY--ANIAMVRTTTPVYVALGIFVQHRVSALPVVDE-----KGRVVDIYSKFDVINLAAE 79 (152)
T ss_dssp TCSBC--SSCCCEETTCBHHHHHHHHHHHCCSEEEEECT-----TSBEEEEEEHHHHHHHHHC
T ss_pred cCCcc--CCceEeCCCCcHHHHHHHHHHcCCceEeEECC-----CCcEEEEEeHHHHHHHhcc
Confidence 45555 77889999999999999999999999999997 7899999999999986543
No 120
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=97.57 E-value=0.00012 Score=69.27 Aligned_cols=59 Identities=14% Similarity=0.177 Sum_probs=54.1
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003966 588 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 660 (783)
Q Consensus 588 ~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~ 660 (783)
..+++++| + ++.++++++++.++++.|.+++.+.+||+|++ |+++|+|+++|++..+..
T Consensus 85 ~~~v~~~m-~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~-----------g~~vGivt~~dil~~l~~ 143 (153)
T 3oco_A 85 KAKISTIM-R--DIVSVPENMKVPDVMEEMSAHRVPMAIVIDEY-----------GGTSGIITDKDVYEELFG 143 (153)
T ss_dssp TSBGGGTC-B--CCEEEETTSBHHHHHHHHHHTTCSCEEEECTT-----------SCEEEEECHHHHHHHHHC
T ss_pred CCcHHHHh-C--CCeEECCCCCHHHHHHHHHHcCCcEEEEEeCC-----------CCEEEEeeHHHHHHHHhc
Confidence 56799999 7 88999999999999999999999999999986 899999999999987754
No 121
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=97.50 E-value=8.7e-05 Score=85.21 Aligned_cols=61 Identities=20% Similarity=0.330 Sum_probs=55.6
Q ss_pred ccCccccccCCCeeecCC-CCHHHHHHHHHHcCCCEEEEee-ccccCCCCcEEEEEehhhchhhHhhh
Q 003966 704 YIDLHPLTNTTPYTVIES-MSVAKAMVLFRQVGLRHLLVVP-KYEAAGVSPVVGILTRQDLRAFNILT 769 (783)
Q Consensus 704 ~~dl~~im~~~p~tV~~~-~sL~~a~~lf~~~glr~lpVVd-~~~~~~~~~vvGIITr~DLl~~~~~~ 769 (783)
...++++|.++++++.++ +++.+++++|++.+++++||+| + +++++||||++||++....+
T Consensus 383 ~~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~-----~g~lvGiVt~~Dll~~l~~~ 445 (527)
T 3pc3_A 383 SLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQD-----DGSVLGVVGQETLITQIVSM 445 (527)
T ss_dssp TSBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTT-----TCCEEEEEEHHHHHHHHHHH
T ss_pred CCcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECC-----CCEEEEEEEHHHHHHHHHhc
Confidence 356889999999999999 9999999999999999999999 6 78999999999999876654
No 122
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=97.44 E-value=0.00013 Score=69.03 Aligned_cols=60 Identities=25% Similarity=0.370 Sum_probs=55.0
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003966 587 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 660 (783)
Q Consensus 587 ~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~ 660 (783)
.+.+++|+|.+ ++.++++++++.++++.|.+++++.+||+| + ++++|+|+++|++..+.+
T Consensus 76 ~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~-----------g~~~Giit~~dil~~l~~ 135 (157)
T 4fry_A 76 KATRVEEIMTA--KVRYVEPSQSTDECMALMTEHRMRHLPVLD-G-----------GKLIGLISIGDLVKSVIA 135 (157)
T ss_dssp SSCBHHHHSBS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-T-----------TEEEEEEEHHHHHHHHHT
T ss_pred cccCHHHHcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEE-C-----------CEEEEEEEHHHHHHHHHH
Confidence 35789999998 899999999999999999999999999999 4 899999999999987765
No 123
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=97.13 E-value=0.00039 Score=72.82 Aligned_cols=60 Identities=17% Similarity=0.317 Sum_probs=53.9
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003966 588 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 660 (783)
Q Consensus 588 ~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~ 660 (783)
+.+++++|.+ +++++++++++.++.+.|++++.+.+||||++ |+++|+|+++|++..+..
T Consensus 198 ~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----------g~lvGivT~~Dil~~i~~ 257 (278)
T 2yvy_A 198 RTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEE-----------GRLVGIVTVDDVLDVLEA 257 (278)
T ss_dssp TCBSTTTSBS--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-----------SBEEEEEEHHHHHHHC--
T ss_pred CCcHHHHhCC--CCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCC-----------CeEEEEEEHHHHHHHHHH
Confidence 5689999988 89999999999999999999999999999986 899999999999876543
No 124
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=97.10 E-value=0.00046 Score=72.68 Aligned_cols=60 Identities=13% Similarity=0.307 Sum_probs=55.1
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003966 588 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 660 (783)
Q Consensus 588 ~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~ 660 (783)
+.+++++|.+ +++++++++++.++.+.|.+++.+.+||||++ |+++|+|+++|++..+..
T Consensus 200 ~~~v~~im~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~-----------g~lvGiIT~~Dil~~i~~ 259 (286)
T 2oux_A 200 DTLIADILNE--RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYD-----------DHLLGIVTVDDIIDVIDD 259 (286)
T ss_dssp TSBHHHHSBS--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-----------CBEEEEEEHHHHHHHHHH
T ss_pred CCcHHHHcCC--CCeeecCCCCHHHHHHHHHHcCCcEEEEEcCC-----------CeEEEEEEHHHHHHHHHH
Confidence 5678999998 89999999999999999999999999999986 899999999999887654
No 125
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=96.99 E-value=0.00019 Score=81.87 Aligned_cols=62 Identities=15% Similarity=0.280 Sum_probs=0.0
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHH
Q 003966 587 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALK 659 (783)
Q Consensus 587 ~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~ 659 (783)
.+.+++|+|++..+++++++++++.++++.|++++.+.+||+|++ ++++|+|+++|+++.+.
T Consensus 159 ~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~-----------g~lvGiIT~~Dil~~~~ 220 (503)
T 1me8_A 159 TETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDD-----------QHLRYIVFRKDYDRSQV 220 (503)
T ss_dssp -------------------------------------------------------------------------
T ss_pred ccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CeEEEEEEecHHHHhhh
Confidence 356899999982129999999999999999999999999999986 89999999999977553
No 126
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=96.95 E-value=0.00091 Score=75.59 Aligned_cols=60 Identities=17% Similarity=0.317 Sum_probs=55.6
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003966 588 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 660 (783)
Q Consensus 588 ~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~ 660 (783)
+.+++|+|++ +++++++++++.++.+.|++++.+.+||||++ ++++|+|+++|+++.+.+
T Consensus 218 ~~~v~dim~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~-----------g~lvGiIT~~Dil~~i~~ 277 (473)
T 2zy9_A 218 RTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEE-----------GRLVGIVTVDDVLDVLEA 277 (473)
T ss_dssp TSBGGGTSBS--SCCCEESSSBHHHHHHHHHHHTCSEEEEECTT-----------SBEEEEEEHHHHHHHHHH
T ss_pred CCcHHHHhCC--CCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCC-----------CEEEEEEehHhhHHHHHH
Confidence 5689999998 89999999999999999999999999999987 899999999999987754
No 127
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=96.79 E-value=0.00076 Score=76.55 Aligned_cols=53 Identities=30% Similarity=0.362 Sum_probs=47.7
Q ss_pred CccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhch
Q 003966 706 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLR 763 (783)
Q Consensus 706 dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl 763 (783)
..+++|.++|+++++++++.++.++|++.+.+.+||+|+ +++++||||++|+.
T Consensus 90 ~~~~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~-----~~~lvGiVt~rDL~ 142 (496)
T 4fxs_A 90 IFEAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTE-----NNELVGIITGRDVR 142 (496)
T ss_dssp HCCC--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECS-----SSBEEEEEEHHHHT
T ss_pred ccccccccCceEECCCCCHHHHHHHHHHcCCcEEEEEcc-----CCEEEEEEEHHHHh
Confidence 346778899999999999999999999999999999997 78999999999997
No 128
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=96.69 E-value=0.0045 Score=70.46 Aligned_cols=62 Identities=16% Similarity=0.283 Sum_probs=55.1
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003966 587 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 660 (783)
Q Consensus 587 ~~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL~~ 660 (783)
.+.+++|+|++ .+++++++++++.++.+.|++++.+.+||||++ ++++|+|+++|+++.+..
T Consensus 173 ~~~~V~~vM~~-~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~-----------g~l~GiIT~~Dil~~~~~ 234 (511)
T 3usb_A 173 YSIKISDVMTK-EQLITAPVGTTLSEAEKILQKYKIEKLPLVDNN-----------GVLQGLITIKDIEKVIEF 234 (511)
T ss_dssp SSSBHHHHCCC-CCCCCEETTCCHHHHHHHHHHHTCSEEEEECTT-----------SBEEEEEEHHHHHHHHHC
T ss_pred CCCcHHHhccc-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCC-----------CCEeeeccHHHHHHhhhc
Confidence 35678999985 368899999999999999999999999999987 899999999999887654
No 129
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=96.51 E-value=0.0021 Score=73.01 Aligned_cols=54 Identities=20% Similarity=0.287 Sum_probs=50.0
Q ss_pred CccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEee--ccccCCCCcEEEEEehhhchh
Q 003966 706 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVP--KYEAAGVSPVVGILTRQDLRA 764 (783)
Q Consensus 706 dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd--~~~~~~~~~vvGIITr~DLl~ 764 (783)
+++++|+++++++++++++.++.++|++.+.+.+||+| + +++++|+||++|++.
T Consensus 91 ~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~-----~~~lvGivt~~Dl~~ 146 (491)
T 1zfj_A 91 RSENGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLA-----NRKLVGIITNRDMRF 146 (491)
T ss_dssp HHTTTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTT-----TCBEEEEEEHHHHHH
T ss_pred hHHhcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCC-----CCEEEEEEEHHHHhh
Confidence 35678999999999999999999999999999999998 6 789999999999985
No 130
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=96.40 E-value=0.00058 Score=77.70 Aligned_cols=55 Identities=29% Similarity=0.331 Sum_probs=1.5
Q ss_pred cCccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchh
Q 003966 705 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRA 764 (783)
Q Consensus 705 ~dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~ 764 (783)
.++.++|.++++++++++++.++.++|++.+.+.+||+|+ +++++|+||++|+..
T Consensus 95 ~~~~~iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~-----~~~lvGivt~~Dl~~ 149 (494)
T 1vrd_A 95 KKTENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDE-----EGRLVGLLTNRDVRF 149 (494)
T ss_dssp HTC---------------------------------------------------------
T ss_pred hhHhhcCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcC-----CCEEEEEEEHHHHHh
Confidence 3567789999999999999999999999999999999997 789999999999974
No 131
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=95.75 E-value=0.0016 Score=72.83 Aligned_cols=58 Identities=21% Similarity=0.332 Sum_probs=0.0
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHH
Q 003966 588 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL 658 (783)
Q Consensus 588 ~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL 658 (783)
+.+++|+|++ +++++++..++.++.++|++++...+||||++ ++|+|+|+++|+.+.-
T Consensus 199 ~~~V~evMT~--~lvt~~~~~~leeA~~iL~~~kieklpVVd~~-----------g~LvGlIT~kDi~k~~ 256 (556)
T 4af0_A 199 ETPIKSVMTT--EVVTGSSPITLEKANSLLRETKKGKLPIVDSN-----------GHLVSLVARSDLLKNQ 256 (556)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ceEhhhhccc--ceEEecCCCCHHHHHHHHHHccccceeEEccC-----------CcEEEEEEechhhhhh
Confidence 5689999999 99999999999999999999999999999987 9999999999997643
No 132
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=95.67 E-value=0.0021 Score=73.38 Aligned_cols=57 Identities=19% Similarity=0.218 Sum_probs=28.2
Q ss_pred CccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhchh
Q 003966 706 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRA 764 (783)
Q Consensus 706 dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl~ 764 (783)
.+.++|.++|+++++++++.++.++|++.+.+.+||+|+ ...+++++|+||++|+..
T Consensus 109 ~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~--~~~~~~lvGiVt~~Dl~~ 165 (514)
T 1jcn_A 109 NFEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITET--GTMGSKLVGIVTSRDIDF 165 (514)
T ss_dssp TCCTTSCSSCCCCCC-----------------CEESCC----------CCEECTTTTC-
T ss_pred hhhhccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeC--CCcCCEEEEEEEHHHHHh
Confidence 456788889999999999999999999999999999985 000379999999999976
No 133
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=95.63 E-value=0.002 Score=73.00 Aligned_cols=52 Identities=29% Similarity=0.403 Sum_probs=2.5
Q ss_pred CccccccCCCeeecCCCCHHHHHHHHHHcCCCEEEEeeccccCCCCcEEEEEehhhch
Q 003966 706 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLR 763 (783)
Q Consensus 706 dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~lpVVd~~~~~~~~~vvGIITr~DLl 763 (783)
.++++|.++|.++++++++.++.++|++.+.+.+||+| +++++||||.+|+.
T Consensus 89 ~~~~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd------~g~lvGIVt~rDl~ 140 (490)
T 4avf_A 89 KHETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE------QGELVGIVTGRDLR 140 (490)
T ss_dssp HCCC------------------------------------------------------
T ss_pred ccccCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE------CCEEEEEEEhHHhh
Confidence 45778889999999999999999999999999999998 47899999999996
No 134
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=95.48 E-value=0.0024 Score=72.34 Aligned_cols=58 Identities=29% Similarity=0.382 Sum_probs=0.0
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCCeEEEEEeHHHHHHHH
Q 003966 588 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL 658 (783)
Q Consensus 588 ~l~v~dvM~~~~~vv~l~~~~~v~~~~~~L~~t~~~~fPVVd~~~~~~~~~~~~~~~l~GiI~r~dLl~lL 658 (783)
+.+++|+|.+ +++++++++++.++++.|++++.+.+||+|++ ++++|+|+++|+++.+
T Consensus 149 ~~~v~~im~~--~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~-----------g~lvGiiT~~Dil~~~ 206 (486)
T 2cu0_A 149 GKLVKELMTK--EVITVPESIEVEEALKIMIENRIDRLPVVDER-----------GKLVGLITMSDLVARK 206 (486)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CCCHHHHccC--CCeEECCcCcHHHHHHHHHHcCCCEEEEEecC-----------CeEEEEEEHHHHHHhh
Confidence 5679999998 88999999999999999999999999999986 8999999999997653
No 135
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=34.77 E-value=15 Score=25.20 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=19.1
Q ss_pred hhhhHHHhhhhhhhhhhccCcccce
Q 003966 242 DRRDLITCGSSSGVCAAFRAPVGGV 266 (783)
Q Consensus 242 ~~r~lv~~GaAAGvaaaF~APigGv 266 (783)
.||+|+-..++++.+++.+.++.+.
T Consensus 4 sRR~FLK~~aaa~Aaaaag~~~~~~ 28 (35)
T 2pq4_B 4 SRRSFMKANAVAAAAAAAGLSVPGV 28 (35)
T ss_dssp CSHHHHHHHHHHHHHHHHCCCCSSS
T ss_pred cHHHHHHHHHHHHHHHHhcccchhH
Confidence 5899998888877777777776643
No 136
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=23.77 E-value=46 Score=24.10 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003966 336 VTLIGIIGGILGGLYNHILHK 356 (783)
Q Consensus 336 ~i~lGv~~Gllg~~f~~l~~~ 356 (783)
.+..|+++|+++.+..-+..+
T Consensus 11 aIA~gVVgGv~~v~ii~~~~~ 31 (44)
T 2l2t_A 11 LIAAGVIGGLFILVIVGLTFA 31 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEeehHHHHHHHHHHHHHH
Confidence 477888888888776554433
Done!