BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003967
(783 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 169 bits (428), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 106/205 (51%), Positives = 129/205 (62%), Gaps = 8/205 (3%)
Query: 2 DLLNCESGSLRLL---DDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDN 58
DLL C + ++ L +D + V L EEVV SE I E R GET +N
Sbjct: 140 DLL-CGTQKMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQR 198
Query: 59 SSRSHQIIRLTIESSLR-ENSGCVKSFLAS-LNLVDLAGSERASQTNADGVRLKEGSHIN 116
SSRSH I R+ +ES + E S C S S LNLVDLAGSERA+QT A GVRLKEG +IN
Sbjct: 199 SSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNIN 258
Query: 117 RSLLTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGNARTAIICTISPALSHVEQTR 176
RSL L VI+KLS G+ G I YRDSKLTRILQ+SLGGNA+T IICTI+P ++T
Sbjct: 259 RSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--SFDETL 316
Query: 177 NTLSFATSAKEVTNNAQVNMVVSDK 201
L FA++AK + N VN V +D+
Sbjct: 317 TALQFASTAKYMKNTPYVNEVSTDE 341
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 150 bits (379), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/185 (45%), Positives = 112/185 (60%), Gaps = 1/185 (0%)
Query: 11 LRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLTI 70
L L + P+ G V+ L V + + + H++ + R VG T +N++SSRSH I +TI
Sbjct: 177 LELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITI 236
Query: 71 ESSLRENSGCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLTLTTVIRKLS 130
E S G + LNLVDLAGSER ++T A G RLKE + IN SL L VI L
Sbjct: 237 ECSEVGLDGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALV 296
Query: 131 GGKRIGHIPYRDSKLTRILQHSLGGNARTAIICTISPALSHVEQTRNTLSFATSAKEVTN 190
GK HIPYRDSKLTR+LQ SLGGNA+T ++ + PA +VE+T TL +A AK + N
Sbjct: 297 DGKST-HIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKN 355
Query: 191 NAQVN 195
+VN
Sbjct: 356 KPRVN 360
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 119/219 (54%), Gaps = 26/219 (11%)
Query: 2 DLLNCESGS-LRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSS 60
DLL+ E G L L ++PE G ++ L V ++ + + H++ + R VG T +N+ SS
Sbjct: 167 DLLSKEPGKRLELKENPETGVYIKDLSSFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVSS 226
Query: 61 RSHQIIRLTIESSLRENSGCVKSFLASLNLVDLAGSER---ASQTNADGV---------- 107
RSH I +T+E S R + G + LNLVDLAGSER A A G
Sbjct: 227 RSHAIFIITVECSERGSDGQDHIRVGKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGG 286
Query: 108 -----------RLKEGSHINRSLLTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGN 156
R KE S IN SL L VI L+G R HIPYRDSKLTR+LQ SLGGN
Sbjct: 287 GGGSGGGAGGERPKEASKINLSLSALGNVIAALAG-NRSTHIPYRDSKLTRLLQDSLGGN 345
Query: 157 ARTAIICTISPALSHVEQTRNTLSFATSAKEVTNNAQVN 195
A+T ++ T+ PA +++ +TL FA AK + N +VN
Sbjct: 346 AKTIMVATLGPASHSYDESLSTLRFANRAKNIKNKPRVN 384
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/186 (45%), Positives = 112/186 (60%), Gaps = 5/186 (2%)
Query: 11 LRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLTI 70
L L +D +G V+ L V + L L+ A R V T +ND SSRSH I + I
Sbjct: 161 LPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRI 220
Query: 71 ESS-LRENSGCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLTLTTVIRKL 129
E S + EN ++ + LNLVDLAGSER S+T A G L EG+ IN SL L VI KL
Sbjct: 221 ECSEVIENKEVIR--VGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKL 278
Query: 130 SGGKRIGHIPYRDSKLTRILQHSLGGNARTAIICTISPALSHVEQTRNTLSFATSAKEVT 189
G HIPYRDSKLTR+LQ SLGGN++T + ISPA ++ ++T +TL +A AK++
Sbjct: 279 VEGAT--HIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIK 336
Query: 190 NNAQVN 195
N ++N
Sbjct: 337 NKPRIN 342
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 135 bits (341), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 117/200 (58%), Gaps = 7/200 (3%)
Query: 1 MDLLNCESG---SLRLLDDP--EKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETAL 55
DLLN S L++ DDP ++G I++ L E V + + + ++ A+R T +
Sbjct: 169 FDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLM 228
Query: 56 NDNSSRSHQIIRLTIESSLRENSGCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHI 115
N SSRSH + +TI G + LNLVDLAGSE ++ A R +E +I
Sbjct: 229 NAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNI 288
Query: 116 NRSLLTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGNARTAIICTISPALSHVEQT 175
N+SLLTL VI L +R H+PYR+SKLTRILQ SLGG RT+II TISPA ++E+T
Sbjct: 289 NQSLLTLGRVITALV--ERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEET 346
Query: 176 RNTLSFATSAKEVTNNAQVN 195
+TL +A AK + N +VN
Sbjct: 347 LSTLEYAHRAKNILNKPEVN 366
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 117/200 (58%), Gaps = 7/200 (3%)
Query: 1 MDLLNCESG---SLRLLDDP--EKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETAL 55
DLLN S L++ DDP ++G I++ L E V + + + ++ A+R T +
Sbjct: 169 FDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLM 228
Query: 56 NDNSSRSHQIIRLTIESSLRENSGCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHI 115
N SSRSH + +TI G + LNLVDLAGSE ++ A R +E +I
Sbjct: 229 NAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNI 288
Query: 116 NRSLLTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGNARTAIICTISPALSHVEQT 175
N+SLLTL VI L +R H+PYR+SKLTRILQ SLGG RT+II TISPA ++E+T
Sbjct: 289 NQSLLTLGRVITALV--ERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEET 346
Query: 176 RNTLSFATSAKEVTNNAQVN 195
+TL +A AK + N +VN
Sbjct: 347 LSTLEYAHRAKNILNKPEVN 366
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 117/200 (58%), Gaps = 7/200 (3%)
Query: 1 MDLLNCESG---SLRLLDDP--EKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETAL 55
DLLN S L++ DDP ++G I++ L E V + + + ++ A+R T +
Sbjct: 171 FDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLM 230
Query: 56 NDNSSRSHQIIRLTIESSLRENSGCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHI 115
N SSRSH + +TI G + LNLVDLAGSE ++ A R +E +I
Sbjct: 231 NAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNI 290
Query: 116 NRSLLTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGNARTAIICTISPALSHVEQT 175
N+SLLTL VI L +R H+PYR+SKLTRILQ SLGG RT+II TISPA ++E+T
Sbjct: 291 NQSLLTLGRVITALV--ERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEET 348
Query: 176 RNTLSFATSAKEVTNNAQVN 195
+TL +A AK + N +VN
Sbjct: 349 LSTLEYAHRAKNILNKPEVN 368
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/188 (42%), Positives = 111/188 (59%), Gaps = 2/188 (1%)
Query: 2 DLLNCESGSLRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSR 61
DLL SG L + +D +KG +V L + SE + HL+ R T +N SSR
Sbjct: 169 DLL-VNSGPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSR 227
Query: 62 SHQIIRLTIESSLRENSGCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLT 121
SH + ++ + + S +A ++L+DLAGSERAS + A G R EG++INRSLL
Sbjct: 228 SHAVFQIYLRQQDKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLA 287
Query: 122 LTTVIRKLSGGKRIG-HIPYRDSKLTRILQHSLGGNARTAIICTISPALSHVEQTRNTLS 180
L VI L+ KR HIPYR+SKLTR+L+ SLGGN +T +I +SP+ + T NTL
Sbjct: 288 LGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLK 347
Query: 181 FATSAKEV 188
+A AK++
Sbjct: 348 YANRAKDI 355
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 117/200 (58%), Gaps = 7/200 (3%)
Query: 1 MDLLNCESG---SLRLLDDP--EKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETAL 55
DLLN S L++ DDP ++G I++ L E V + + + ++ A+R T +
Sbjct: 169 FDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLM 228
Query: 56 NDNSSRSHQIIRLTIESSLRENSGCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHI 115
N SSRSH + +TI G + LNLVDLAGSE ++ A R +E +I
Sbjct: 229 NAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNI 288
Query: 116 NRSLLTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGNARTAIICTISPALSHVEQT 175
N+SLLTL VI L +R H+PYR+SKLTRILQ SLGG RT+II TISPA ++E+T
Sbjct: 289 NQSLLTLGRVITALV--ERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEET 346
Query: 176 RNTLSFATSAKEVTNNAQVN 195
+TL +A AK + N +VN
Sbjct: 347 LSTLEYAHRAKNILNKPEVN 366
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 117/200 (58%), Gaps = 7/200 (3%)
Query: 1 MDLLNCESG---SLRLLDDP--EKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETAL 55
DLLN S L++ DDP ++G I++ L E V + + + ++ A+R T +
Sbjct: 169 FDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLM 228
Query: 56 NDNSSRSHQIIRLTIESSLRENSGCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHI 115
N SSRSH + +TI G + LNLVDLAGSE ++ A R +E +I
Sbjct: 229 NAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNI 288
Query: 116 NRSLLTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGNARTAIICTISPALSHVEQT 175
N+SLLTL VI L +R H+PYR+SKLTRILQ SLGG RT+II TISPA ++E+T
Sbjct: 289 NQSLLTLGRVITALV--ERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEET 346
Query: 176 RNTLSFATSAKEVTNNAQVN 195
+TL +A AK + N +VN
Sbjct: 347 LSTLEYAHRAKNILNKPEVN 366
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 117/200 (58%), Gaps = 7/200 (3%)
Query: 1 MDLLNCESG---SLRLLDDP--EKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETAL 55
DLLN S L++ DDP ++G I++ L E V + + + ++ A+R T +
Sbjct: 168 FDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLM 227
Query: 56 NDNSSRSHQIIRLTIESSLRENSGCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHI 115
N SSRSH + +TI G + LNLVDLAGSE ++ A R +E +I
Sbjct: 228 NAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNI 287
Query: 116 NRSLLTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGNARTAIICTISPALSHVEQT 175
N+SLLTL VI L +R H+PYR+SKLTRILQ SLGG RT+II TISPA ++E+T
Sbjct: 288 NQSLLTLGRVITALV--ERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEET 345
Query: 176 RNTLSFATSAKEVTNNAQVN 195
+TL +A AK + N +VN
Sbjct: 346 LSTLEYAHRAKNILNKPEVN 365
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 117/200 (58%), Gaps = 7/200 (3%)
Query: 1 MDLLNCESG---SLRLLDDP--EKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETAL 55
DLLN S L++ DDP ++G I++ L E V + + + ++ A+R T +
Sbjct: 169 FDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLM 228
Query: 56 NDNSSRSHQIIRLTIESSLRENSGCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHI 115
N SSRSH + +TI G + LNLVDLAGSE ++ A R +E +I
Sbjct: 229 NAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNI 288
Query: 116 NRSLLTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGNARTAIICTISPALSHVEQT 175
N+SLLTL VI L +R H+PYR+SKLTRILQ SLGG RT+II TISPA ++E+T
Sbjct: 289 NQSLLTLGRVITALV--ERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEET 346
Query: 176 RNTLSFATSAKEVTNNAQVN 195
+TL +A AK + N +VN
Sbjct: 347 LSTLEYAHRAKNILNKPEVN 366
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 117/200 (58%), Gaps = 7/200 (3%)
Query: 1 MDLLNCESG---SLRLLDDP--EKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETAL 55
DLLN S L++ DDP ++G I++ L E V + + + ++ A+R T +
Sbjct: 160 FDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLM 219
Query: 56 NDNSSRSHQIIRLTIESSLRENSGCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHI 115
N SSRSH + +TI G + LNLVDLAGSE ++ A R +E +I
Sbjct: 220 NAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNI 279
Query: 116 NRSLLTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGNARTAIICTISPALSHVEQT 175
N+SLLTL VI L +R H+PYR+SKLTRILQ SLGG RT+II TISPA ++E+T
Sbjct: 280 NQSLLTLGRVITALV--ERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEET 337
Query: 176 RNTLSFATSAKEVTNNAQVN 195
+TL +A AK + N +VN
Sbjct: 338 LSTLEYAHRAKNILNKPEVN 357
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 119/209 (56%), Gaps = 4/209 (1%)
Query: 2 DLLNCESGSLRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSR 61
DLL+ +L + +D + V+ E V E + +I ++ R + T +N++SSR
Sbjct: 151 DLLDVSKVNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSR 210
Query: 62 SHQIIRLTIESSLRENSGCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLT 121
SH + + ++ EN K L LVDLAGSE+ S+T A+G L E +IN+SL
Sbjct: 211 SHSVFLINVKQENLENQ---KKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA 267
Query: 122 LTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGNARTAIICTISPALSHVEQTRNTLSF 181
L VI L+ G + HIPYRDSKLTRILQ SLGGNART I+ SPA + +T++TL F
Sbjct: 268 LGNVISALADGNKT-HIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDF 326
Query: 182 ATSAKEVTNNAQVNMVVSDKRLVKQLQKE 210
AK V N VN ++ + ++ +KE
Sbjct: 327 GRRAKTVKNVVCVNEELTAEEWKRRYEKE 355
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 118/208 (56%), Gaps = 4/208 (1%)
Query: 2 DLLNCESGSLRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSR 61
DLL ++ +L + ++ +G V+ L+E V + + ++ R V T +N SSR
Sbjct: 148 DLLAPQNDNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSR 207
Query: 62 SHQIIRLTIESSLRENSGCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLT 121
SH I +TI E +G KS L LVDLAGSE+ +T A G L+E IN+SL
Sbjct: 208 SHSIFVITITQKNVE-TGSAKS--GQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSA 264
Query: 122 LTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGNARTAIICTISPALSHVEQTRNTLSF 181
L VI L+ GK H+PYRDSKLTRILQ SLGGN+RT +I SP+ + +T +TL F
Sbjct: 265 LGMVINALTDGKS-SHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRF 323
Query: 182 ATSAKEVTNNAQVNMVVSDKRLVKQLQK 209
AK + N A+VN +S L + L K
Sbjct: 324 GMRAKSIKNKAKVNAELSPAELKQMLAK 351
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/195 (42%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 1 MDLLNCESG---SLRLLDDP--EKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETAL 55
DLLN S L++ DDP ++G I++ L E V + + + ++ A+R T +
Sbjct: 154 FDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLM 213
Query: 56 NDNSSRSHQIIRLTIESSLRENSGCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHI 115
N SSRSH + +TI G + LNLVDLAGSE ++ A R +E +I
Sbjct: 214 NAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNI 273
Query: 116 NRSLLTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGNARTAIICTISPALSHVEQT 175
N+SLLTL VI L +R H+PYR+SKLTRILQ SLGG RT+II TISPA ++E+T
Sbjct: 274 NQSLLTLGRVITALV--ERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEET 331
Query: 176 RNTLSFATSAKEVTN 190
+TL +A AK + N
Sbjct: 332 LSTLEYAHRAKNILN 346
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 123/200 (61%), Gaps = 10/200 (5%)
Query: 2 DLLNCESGS-LRLLDDP-EKGTIVEKLVEEV-VRDSEHLRHLIGICEAQRQVGETALNDN 58
DLL+ + + +R+ DD +KG+++ + +EE+ V + + L+ + +R+ T +N
Sbjct: 173 DLLSTDDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQ 232
Query: 59 SSRSHQIIRLTIESSLRENSGCVKSFL--ASLNLVDLAGSERASQT-NADGVRLKEGSHI 115
SSRSH + + + +REN + L LNLVDLAGSE S+ N G+R++E +I
Sbjct: 233 SSRSHTVFSIVVH--IRENGIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNI 290
Query: 116 NRSLLTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGNARTAIICTISPALSHVEQT 175
N+SLLTL VI L R H+PYR+SKLTR+LQ SLGG +T+II TISP +E+T
Sbjct: 291 NQSLLTLGRVITALV--DRAPHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEET 348
Query: 176 RNTLSFATSAKEVTNNAQVN 195
+TL +A AK + N +VN
Sbjct: 349 LSTLEYAHRAKNIQNKPEVN 368
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 127 bits (319), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 107/172 (62%), Gaps = 5/172 (2%)
Query: 20 GTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLTIESSLRE-NS 78
G V+ L + V + + L+ R V T +N+ SSRSH + ++T+ +L + S
Sbjct: 177 GPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKS 236
Query: 79 GCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLTLTTVIRKLS----GGKR 134
G + L+LVDLAGSERA++T A G RLKEGS+IN+SL TL VI L+ G +
Sbjct: 237 GTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNK 296
Query: 135 IGHIPYRDSKLTRILQHSLGGNARTAIICTISPALSHVEQTRNTLSFATSAK 186
+PYRDS LT +L+ SLGGN++TA++ T+SPA + ++T +TL +A AK
Sbjct: 297 NKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 348
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 125 bits (315), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 119/207 (57%), Gaps = 12/207 (5%)
Query: 2 DLLNCES-GSLRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSS 60
DLLN ++ G+LR+ + P G VE L + V ++ L+ R V T +N+ SS
Sbjct: 172 DLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSS 231
Query: 61 RSHQIIRLTIESSLRE-NSGCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSL 119
RSH + + + + ++ ++LVDLAGSERA T A G RLKEG++IN+SL
Sbjct: 232 RSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSL 291
Query: 120 LTLTTVIRKL----SG------GKRIGHIPYRDSKLTRILQHSLGGNARTAIICTISPAL 169
TL VI L SG K+ IPYRDS LT +L+ +LGGN+RTA++ +SPA
Sbjct: 292 TTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPAD 351
Query: 170 SHVEQTRNTLSFATSAKEVTNNAQVNM 196
+ ++T +TL +A AK++ N VN+
Sbjct: 352 INYDETLSTLRYADRAKQIRNTVSVNL 378
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 111/195 (56%), Gaps = 5/195 (2%)
Query: 2 DLLNCESGSLRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSR 61
DLL+ +L + +D + V+ E V + + I ++ R V T +N++SSR
Sbjct: 144 DLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSR 203
Query: 62 SHQIIRLTIESSLRENSGCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLT 121
SH I + ++ +EN+ + L LVDLAGSE+ S+T A+G L E +IN+SL
Sbjct: 204 SHSIFLINVK---QENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSA 260
Query: 122 LTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGNARTAIICTISPALSHVEQTRNTLSF 181
L VI L+ G ++PYRDSK+TRILQ SLGGN RT I+ SP+ + +T++TL F
Sbjct: 261 LGNVISALAEGST--YVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLF 318
Query: 182 ATSAKEVTNNAQVNM 196
AK + N VN+
Sbjct: 319 GQRAKTIKNTVCVNV 333
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 118/206 (57%), Gaps = 12/206 (5%)
Query: 2 DLLNCES-GSLRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSS 60
DLLN ++ G+LR+ + P G VE L + V ++ L+ R V T +N+ SS
Sbjct: 156 DLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSS 215
Query: 61 RSHQIIRLTIESSLRE-NSGCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSL 119
RSH + + + + ++ ++LVDLAGSERA T A G RLKEG++IN+SL
Sbjct: 216 RSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSL 275
Query: 120 LTLTTVIRKL----SG------GKRIGHIPYRDSKLTRILQHSLGGNARTAIICTISPAL 169
TL VI L SG K+ IPYRDS LT +L+ +LGGN+RTA++ +SPA
Sbjct: 276 TTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPAD 335
Query: 170 SHVEQTRNTLSFATSAKEVTNNAQVN 195
+ ++T +TL +A AK++ N VN
Sbjct: 336 INYDETLSTLRYADRAKQIRNTVSVN 361
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 111/195 (56%), Gaps = 5/195 (2%)
Query: 2 DLLNCESGSLRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSR 61
DLL+ +L + +D + V+ E V + + I ++ R V T +N++SSR
Sbjct: 144 DLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSR 203
Query: 62 SHQIIRLTIESSLRENSGCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLT 121
SH I + ++ +EN+ + L LVDLAGSE+ S+T A+G L E +IN+SL
Sbjct: 204 SHSIFLINVK---QENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSA 260
Query: 122 LTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGNARTAIICTISPALSHVEQTRNTLSF 181
L VI L+ G ++PYRDSK+TRILQ SLGGN RT I+ SP+ + +T++TL F
Sbjct: 261 LGNVISALAEGST--YVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLF 318
Query: 182 ATSAKEVTNNAQVNM 196
AK + N VN+
Sbjct: 319 GQRAKTIKNTVCVNV 333
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/195 (43%), Positives = 115/195 (58%), Gaps = 12/195 (6%)
Query: 2 DLLNCESGSLRL-LDDPEKGTIVEKLVEEVVRDSEHLRHLIGICE---AQRQVGETALND 57
DLL + S + L + E+G +V V+EV D E L ++ + E A R G T LN
Sbjct: 152 DLLEVGTASRDIQLREDERGNVVLCGVKEV--DVEGLDEVLSLLEMGNAARHTGATHLNH 209
Query: 58 NSSRSHQIIRLTIESSLRENSGCVKS-----FLASLNLVDLAGSERASQTNADGVRLKEG 112
SSRSH + +T+E R S + ++ + VDLAGSER +T + G RLKE
Sbjct: 210 LSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKES 269
Query: 113 SHINRSLLTLTTVIRKLSGGKRIG-HIPYRDSKLTRILQHSLGGNARTAIICTISPALSH 171
IN SLL L VI L +R G HIPYRDSK+TRIL+ SLGGNA+T +I +SP+ S
Sbjct: 270 IQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSD 329
Query: 172 VEQTRNTLSFATSAK 186
++T NTL++A+ A+
Sbjct: 330 FDETLNTLNYASRAQ 344
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 118/206 (57%), Gaps = 12/206 (5%)
Query: 2 DLLNCES-GSLRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSS 60
DLLN ++ G+LR+ + P G VE L + V ++ L+ R V T +N+ SS
Sbjct: 156 DLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSS 215
Query: 61 RSHQIIRLTIESSLRE-NSGCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSL 119
RSH + + + + ++ ++LVDLAGSERA T A G RLKEG++IN+SL
Sbjct: 216 RSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSL 275
Query: 120 LTLTTVIRKL----SG------GKRIGHIPYRDSKLTRILQHSLGGNARTAIICTISPAL 169
TL VI L SG K+ IPYRDS LT +L+ +LGGN+RTA++ +SPA
Sbjct: 276 TTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPAD 335
Query: 170 SHVEQTRNTLSFATSAKEVTNNAQVN 195
+ ++T +TL +A AK++ N VN
Sbjct: 336 INYDETLSTLRYADRAKQIRNTVSVN 361
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 124 bits (310), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 118/206 (57%), Gaps = 12/206 (5%)
Query: 2 DLLNCES-GSLRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSS 60
DLLN ++ G+LR+ + P G VE L + V ++ L+ R V T +N+ SS
Sbjct: 156 DLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSS 215
Query: 61 RSHQIIRLTIESSLRE-NSGCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSL 119
RSH + + + + ++ ++LVDLAGSERA T A G RLKEG++IN+SL
Sbjct: 216 RSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSL 275
Query: 120 LTLTTVIRKL----SG------GKRIGHIPYRDSKLTRILQHSLGGNARTAIICTISPAL 169
TL VI L SG K+ IPYRDS LT +L+ +LGGN+RTA++ +SPA
Sbjct: 276 TTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPAD 335
Query: 170 SHVEQTRNTLSFATSAKEVTNNAQVN 195
+ ++T +TL +A AK++ N VN
Sbjct: 336 INYDETLSTLRYADRAKQIRNTVSVN 361
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 120 bits (300), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 112/198 (56%), Gaps = 16/198 (8%)
Query: 19 KGTI-VEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLTIESSLREN 77
KG + VE + + E L+ +I QR T +N+ SSRSH I+ + IES+ +
Sbjct: 162 KGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQT 221
Query: 78 SGCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLTLTTVIRKLSGGKRIGH 137
+ L+ VDLAGSER ++ + G +LKE IN+SL L VI LS G + H
Sbjct: 222 QAIAR---GKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQ--H 276
Query: 138 IPYRDSKLTRILQHSLGGNARTAIICTISPALSHVEQTRNTLSFATSAKEVTNNAQVNMV 197
IPYR+ KLT ++ SLGGNA+T + ISPA S++++T N+L++A+ + + N+ N+
Sbjct: 277 IPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVS 336
Query: 198 VSDKRLVKQLQKEVARLE 215
KEVARL+
Sbjct: 337 ----------SKEVARLK 344
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 119 bits (299), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 72/187 (38%), Positives = 107/187 (57%), Gaps = 5/187 (2%)
Query: 2 DLLNCESGSLRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSR 61
DLL+ +L + +D + V+ E V + + I ++ R V T +N++SSR
Sbjct: 144 DLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSR 203
Query: 62 SHQIIRLTIESSLRENSGCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLT 121
SH I + ++ +EN+ + L LVDLAGSE+ S+T A+G L E +IN+SL
Sbjct: 204 SHSIFLINVK---QENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSA 260
Query: 122 LTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGNARTAIICTISPALSHVEQTRNTLSF 181
L VI L+ G ++PYRDSK+TRILQ SLGGN RT I+ SP+ + +T++TL F
Sbjct: 261 LGNVISALAEGST--YVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLF 318
Query: 182 ATSAKEV 188
AK +
Sbjct: 319 GQRAKTI 325
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 113/210 (53%), Gaps = 27/210 (12%)
Query: 11 LRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLT- 69
L++ + P +G V+ L E VR E + + I + R V T +ND SSRSH + +
Sbjct: 217 LKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIML 276
Query: 70 --IESSLRENSGCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLTLTTVIR 127
I L + +S + + LVDLAGSERA T A G RL+EGS+IN+SL TL VI
Sbjct: 277 KQIHHDLETDDTTERS--SRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIA 334
Query: 128 KLSG----------------GKRIGH----IPYRDSKLTRILQHSLGGNARTAIICTISP 167
L+ G+ G +PYRDS LT +L+ SLGGN++TA+I ISP
Sbjct: 335 ALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISP 394
Query: 168 ALSHVEQTRNTLSFATSAKEVTNNAQVNMV 197
+ ++T +TL +A AK + A VN V
Sbjct: 395 --TDYDETLSTLRYADQAKRIRTRAVVNQV 422
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 111/191 (58%), Gaps = 13/191 (6%)
Query: 1 MDLLNCESGSLRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSS 60
DLLN + LR+L+D ++ V L E +V ++ + +I + A R G+T N NSS
Sbjct: 204 FDLLN-KKAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSS 262
Query: 61 RSHQIIRLTIESSLRENSGCVKSFLASLNLVDLAGSERASQTN-ADGVRLKEGSHINRSL 119
RSH ++ + + R + +LVDLAG+ER + T+ AD EG+ IN+SL
Sbjct: 263 RSHACFQIILRAKGRMH--------GKFSLVDLAGNERGADTSSADRQTRMEGAEINKSL 314
Query: 120 LTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHS-LGGNARTAIICTISPALSHVEQTRNT 178
L L IR L G+ H P+R+SKLT++L+ S +G N+RT +I TISP +S E T NT
Sbjct: 315 LALKECIRAL--GQNKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNT 372
Query: 179 LSFATSAKEVT 189
L +A KE++
Sbjct: 373 LRYADRVKELS 383
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 115/202 (56%), Gaps = 8/202 (3%)
Query: 11 LRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLTI 70
L + D + VE + + E LR ++ +R V T +N+ SSRSH I+ + I
Sbjct: 163 LEIKKDSKGMVFVENVTTIPISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVI 222
Query: 71 ESSLRENSGCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLTLTTVIRKLS 130
ES + + L+ VDLAGSER ++ + G +LKE IN+SL L VI LS
Sbjct: 223 ESIDLQTQSAAR---GKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALS 279
Query: 131 GGKRIGHIPYRDSKLTRILQHSLGGNARTAIICTISPALSHVEQTRNTLSFATSAKEVTN 190
G + HIPYR+ KLT ++ SLGGNA+T + +SPA S++++T N+L +A+ + + N
Sbjct: 280 SGNQ--HIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTIVN 337
Query: 191 NAQVNMVVSDKRLVKQLQKEVA 212
+ + +S K +V+ L+K VA
Sbjct: 338 DPSKH--ISSKEMVR-LKKLVA 356
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 114 bits (284), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 113/195 (57%), Gaps = 12/195 (6%)
Query: 2 DLLNCESGSLRL-LDDPEKGTIVEKLVEEVVRDSEHLRHLIGICE---AQRQVGETALND 57
DLL + S + L + E+G +V V+EV D E L ++ + E A R G T LN
Sbjct: 152 DLLEVGTASRDIQLREDERGNVVLCGVKEV--DVEGLDEVLSLLEMGNAARHTGATHLNH 209
Query: 58 NSSRSHQIIRLTIESSLRENSGCVKS-----FLASLNLVDLAGSERASQTNADGVRLKEG 112
SSRSH + +T++ R S + ++ + VDLAGSER +T + G KE
Sbjct: 210 LSSRSHTVFTVTLKQRGRAPSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGELRKES 269
Query: 113 SHINRSLLTLTTVIRKLSGGKRIG-HIPYRDSKLTRILQHSLGGNARTAIICTISPALSH 171
IN SLL L VI L +R G +IPYRDSK+TRIL+ SLGGNA+T +I +SP+ S
Sbjct: 270 IQINSSLLALGNVISALGDPQRRGSNIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSD 329
Query: 172 VEQTRNTLSFATSAK 186
++T NTL++A+ A+
Sbjct: 330 FDETLNTLNYASRAQ 344
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 113 bits (283), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 114/214 (53%), Gaps = 8/214 (3%)
Query: 1 MDLLNCESGSLRLLDDPEKGTIVEKLVEEVVRD-SEHLRHLIGICEAQRQVGETALNDNS 59
+DLL+ SG L + +D ++ L ++ + ++ RH + R VG T LN S
Sbjct: 164 LDLLDPASGDLVIREDCRGNILIPGLSQKPISSFADFERHFL-PASRNRTVGATRLNQRS 222
Query: 60 SRSHQIIRLTIESSLRENSGCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSL 119
SRSH ++ + ++ RE + L L+DLAGSE +T G+RLKE IN SL
Sbjct: 223 SRSHAVLLVKVDQ--RERLAPFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSL 280
Query: 120 LTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGNARTAIICTISPALSHVEQTRNTL 179
L V+ L+ G + +PYRDSKLTR+LQ SLGG+A + +I I+P T + L
Sbjct: 281 FVLGKVVDALNQG--LPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSAL 338
Query: 180 SFATSAKEVTNNAQVNMVVSDKRL--VKQLQKEV 211
+FA +KEV N N + L VK QKE+
Sbjct: 339 NFAARSKEVINRPFTNESLQPHALGPVKLSQKEL 372
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 113 bits (282), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/181 (39%), Positives = 101/181 (55%), Gaps = 8/181 (4%)
Query: 15 DDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLTIESSL 74
DD T V + ++ E ++ +R T ND+SSRSH I + ++
Sbjct: 542 DDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGY- 600
Query: 75 RENSGCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLTLTTVIRKLSGGKR 134
NS +S +LNL+DLAGSER + + A+G RLKE IN+SL L VI L+ K
Sbjct: 601 --NSLTKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNL-KD 657
Query: 135 IGHIPYRDSKLTRILQHSLGGNARTAIICTISPALSHVEQTRNTLSFATSAKEVTNNAQV 194
H+PYR+SKLT +L+HSLGGN++T + ISP + +T N+L FAT NN ++
Sbjct: 658 GSHVPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATK----VNNTRI 713
Query: 195 N 195
N
Sbjct: 714 N 714
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 109/191 (57%), Gaps = 13/191 (6%)
Query: 1 MDLLNCESGSLRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSS 60
DLLN + LR+L+D + V L E +V ++ + +I + A R G+T N NSS
Sbjct: 224 FDLLN-KKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSS 282
Query: 61 RSHQIIRLTIESSLRENSGCVKSFLASLNLVDLAGSERASQTN-ADGVRLKEGSHINRSL 119
RSH ++ + + R + +LVDLAG+ER + T+ AD EG+ IN+SL
Sbjct: 283 RSHACFQILLRTKGRLH--------GKFSLVDLAGNERGADTSSADRQTRMEGAEINKSL 334
Query: 120 LTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHS-LGGNARTAIICTISPALSHVEQTRNT 178
L L IR L G+ H P+R+SKLT++L+ S +G N+RT +I ISP +S E T NT
Sbjct: 335 LALKECIRAL--GQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNT 392
Query: 179 LSFATSAKEVT 189
L +A KE++
Sbjct: 393 LRYADRVKELS 403
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 109/191 (57%), Gaps = 13/191 (6%)
Query: 1 MDLLNCESGSLRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSS 60
DLLN + LR+L+D + V L E +V ++ + +I + A R G+T N NSS
Sbjct: 152 FDLLN-KKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSS 210
Query: 61 RSHQIIRLTIESSLRENSGCVKSFLASLNLVDLAGSERASQTN-ADGVRLKEGSHINRSL 119
RSH ++ + + R + +LVDLAG+ER + T+ AD EG+ IN+SL
Sbjct: 211 RSHACFQILLRTKGRLH--------GKFSLVDLAGNERGADTSSADRQTRMEGAEINKSL 262
Query: 120 LTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHS-LGGNARTAIICTISPALSHVEQTRNT 178
L L IR L G+ H P+R+SKLT++L+ S +G N+RT +I ISP +S E T NT
Sbjct: 263 LALKECIRAL--GQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNT 320
Query: 179 LSFATSAKEVT 189
L +A KE++
Sbjct: 321 LRYADRVKELS 331
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 109/190 (57%), Gaps = 13/190 (6%)
Query: 1 MDLLNCESGSLRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSS 60
DLLN ++ LR+L+D ++ V L E V+ E + LI I + R G+T+ N +SS
Sbjct: 242 FDLLNRKT-KLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSS 300
Query: 61 RSHQIIRLTIESSLRENSGCVKSFLASLNLVDLAGSERASQTN-ADGVRLKEGSHINRSL 119
RSH + ++ + + +L+DLAG+ER + T+ AD EG+ IN+SL
Sbjct: 301 RSHAVFQIILRRKGK--------LHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSL 352
Query: 120 LTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHS-LGGNARTAIICTISPALSHVEQTRNT 178
L L IR L G+ H P+R SKLT++L+ S +G N+RT +I TISP ++ E T NT
Sbjct: 353 LALKECIRAL--GRNKPHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNT 410
Query: 179 LSFATSAKEV 188
L +A KE+
Sbjct: 411 LRYANRVKEL 420
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 97/183 (53%), Gaps = 15/183 (8%)
Query: 11 LRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLTI 70
+RL D V L E V+ + + + R T LN++SSRSH ++ +T+
Sbjct: 156 IRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTV 215
Query: 71 -----ESSLRENSGCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLTLTTV 125
+ LR LNLVDLAGSER ++ A+G RL+E HIN+SL L V
Sbjct: 216 RGVDCSTGLRTT--------GKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDV 267
Query: 126 IRKLSGGKRIGHIPYRDSKLTRILQHSLGGNARTAIICTISPALSHVEQTRNTLSFATSA 185
I L R GH+P+R+SKLT +LQ SL G+++T ++ +SP + +T +L FA
Sbjct: 268 IAALR--SRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERV 325
Query: 186 KEV 188
+ V
Sbjct: 326 RSV 328
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 101/186 (54%), Gaps = 11/186 (5%)
Query: 2 DLLNCESGSL--RLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNS 59
DLL+ E + R+ + + V + EE V D HLRHL+ + R TA N+ S
Sbjct: 197 DLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERS 256
Query: 60 SRSHQIIRLTIESSLRENSGCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSL 119
SRSH + +L + E + + S+NLVDLAGSE + R+ E +INRSL
Sbjct: 257 SRSHAVTKLELIGRHAEKQ---EISVGSINLVDLAGSESPKTS----TRMTETKNINRSL 309
Query: 120 LTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGNARTAIICTISPALSHVEQTRNTL 179
LT VI L+ ++ HIPYR+SKLT +L SLGGN++T + +SP +++ +L
Sbjct: 310 SELTNVI--LALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSL 367
Query: 180 SFATSA 185
FA S
Sbjct: 368 RFAASV 373
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 101/186 (54%), Gaps = 11/186 (5%)
Query: 2 DLLNCESGSL--RLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNS 59
DLL+ E + R+ + + V + EE V D HLRHL+ + R TA N+ S
Sbjct: 203 DLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERS 262
Query: 60 SRSHQIIRLTIESSLRENSGCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSL 119
SRSH + +L + E + + S+NLVDLAGSE + R+ E +INRSL
Sbjct: 263 SRSHAVTKLELIGRHAEKQ---EISVGSINLVDLAGSESPKTS----TRMTETKNINRSL 315
Query: 120 LTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGNARTAIICTISPALSHVEQTRNTL 179
LT VI L+ ++ HIPYR+SKLT +L SLGGN++T + +SP +++ +L
Sbjct: 316 SELTNVI--LALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSL 373
Query: 180 SFATSA 185
FA S
Sbjct: 374 RFAASV 379
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 101/186 (54%), Gaps = 11/186 (5%)
Query: 2 DLLNCESGSL--RLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNS 59
DLL+ E + R+ + + V + EE V D HLRHL+ + R TA N+ S
Sbjct: 211 DLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERS 270
Query: 60 SRSHQIIRLTIESSLRENSGCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSL 119
SRSH + +L + E + + S+NLVDLAGSE + R+ E +INRSL
Sbjct: 271 SRSHAVTKLELIGRHAEKQ---EISVGSINLVDLAGSESPKTS----TRMTETKNINRSL 323
Query: 120 LTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGNARTAIICTISPALSHVEQTRNTL 179
LT VI L+ ++ HIPYR+SKLT +L SLGGN++T + +SP +++ +L
Sbjct: 324 SELTNVI--LALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSL 381
Query: 180 SFATSA 185
FA S
Sbjct: 382 RFAASV 387
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 100/186 (53%), Gaps = 11/186 (5%)
Query: 2 DLLNCESGSL--RLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNS 59
DLL+ E + R+ + + V + EE V D HLRHL+ + R TA N+ S
Sbjct: 200 DLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERS 259
Query: 60 SRSHQIIRLTIESSLRENSGCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSL 119
SRSH + +L + E + + S+NLVDLAGSE + R+ E +INRSL
Sbjct: 260 SRSHAVTKLELIGRHAEKQ---EISVGSINLVDLAGSESPKTS----TRMTETKNINRSL 312
Query: 120 LTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGNARTAIICTISPALSHVEQTRNTL 179
LT VI L ++ HIPYR+SKLT +L SLGGN++T + +SP +++ +L
Sbjct: 313 SELTNVILALL--QKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSL 370
Query: 180 SFATSA 185
FA S
Sbjct: 371 RFAASV 376
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/139 (43%), Positives = 85/139 (61%), Gaps = 8/139 (5%)
Query: 48 RQVGETALNDNSSRSHQIIRLTIESSLRENSGCVKSFLASLNLVDLAGSERASQTNADGV 107
R TA N++SSRSH I + + S N+ +LNLVDLAGSER + + G
Sbjct: 259 RSTASTASNEHSSRSHSIFIIHLSGS---NAKTGAHSYGTLNLVDLAGSERINVSQVVGD 315
Query: 108 RLKEGSHINRSLLTLTTVIRKLS---GGKRIGHIPYRDSKLTRILQHSLGGNARTAIICT 164
RL+E +IN+SL L VI L KR HIP+R+SKLT +LQ+SL G+++T +
Sbjct: 316 RLRETQNINKSLSALGDVIHALGQPDSTKR--HIPFRNSKLTYLLQYSLTGDSKTLMFVN 373
Query: 165 ISPALSHVEQTRNTLSFAT 183
ISP+ SH+ +T N+L FA+
Sbjct: 374 ISPSSSHINETLNSLRFAS 392
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 91/150 (60%), Gaps = 11/150 (7%)
Query: 48 RQVGETALNDNSSRSHQIIRLTIESSLRENSGCVKSFLASLNLVDLAGSERASQTNADGV 107
R TA N++SSRSH I + +E +N G + LNLVDLAGSER + + G
Sbjct: 227 RSTASTAANEHSSRSHSIFIIHLEG---KNEGTGEKSQGILNLVDLAGSERLNSSMVVGE 283
Query: 108 RLKEGSHINRSLLTLTTVIRKLS---GGKRIGHIPYRDSKLTRILQHSLGGNARTAIICT 164
RL+E IN+SL L VI L+ G KR HIP+R+SKLT +LQ+SL G+++T +
Sbjct: 284 RLRETQSINKSLSCLGDVIHALNSPDGQKR--HIPFRNSKLTYLLQYSLIGSSKTLMFVN 341
Query: 165 ISPALSHVEQTRNTLSFAT---SAKEVTNN 191
ISPA H+ +T N+L FA+ + K +T N
Sbjct: 342 ISPAALHLNETINSLRFASKVNNTKMITRN 371
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 100/186 (53%), Gaps = 11/186 (5%)
Query: 2 DLLNCESGSL--RLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNS 59
DLL+ E + R+ + + V + EE V D HLRHL+ + R TA N+ S
Sbjct: 200 DLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERS 259
Query: 60 SRSHQIIRLTIESSLRENSGCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSL 119
SRSH + +L + E + + S+NLVDLAGSE + R+ E +I RSL
Sbjct: 260 SRSHAVTKLELIGRHAEKQ---EISVGSINLVDLAGSESPKTS----TRMTETKNIKRSL 312
Query: 120 LTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGNARTAIICTISPALSHVEQTRNTL 179
LT VI L+ ++ HIPYR+SKLT +L SLGGN++T + +SP +++ +L
Sbjct: 313 SELTNVI--LALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSL 370
Query: 180 SFATSA 185
FA S
Sbjct: 371 RFAASV 376
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 95/163 (58%), Gaps = 18/163 (11%)
Query: 24 EKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLTIESSLRENSGCVKS 83
E++VE +++ + LR TA N++SSRSH I + + S N+
Sbjct: 188 EEMVEIILKKANKLR----------STASTASNEHSSRSHSIFIIHLSGS---NAKTGAH 234
Query: 84 FLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLTLTTVIRKLS---GGKRIGHIPY 140
+LNLVDLAGSER + + G RL+E +IN+SL L VI L KR HIP+
Sbjct: 235 SYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKR--HIPF 292
Query: 141 RDSKLTRILQHSLGGNARTAIICTISPALSHVEQTRNTLSFAT 183
R+SKLT +LQ+SL G+++T + ISP+ SH+ +T N+L FA+
Sbjct: 293 RNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFAS 335
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/139 (43%), Positives = 85/139 (61%), Gaps = 8/139 (5%)
Query: 48 RQVGETALNDNSSRSHQIIRLTIESSLRENSGCVKSFLASLNLVDLAGSERASQTNADGV 107
R TA N++SSRSH I + + S N+ +LNLVDLAGSER + + G
Sbjct: 214 RSTASTASNEHSSRSHSIFIIHLSGS---NAKTGAHSYGTLNLVDLAGSERINVSQVVGD 270
Query: 108 RLKEGSHINRSLLTLTTVIRKLS---GGKRIGHIPYRDSKLTRILQHSLGGNARTAIICT 164
RL+E +IN+SL L VI L KR HIP+R+SKLT +LQ+SL G+++T +
Sbjct: 271 RLRETQNINKSLSCLGDVIHALGQPDSTKR--HIPFRNSKLTYLLQYSLTGDSKTLMFVN 328
Query: 165 ISPALSHVEQTRNTLSFAT 183
ISP+ SH+ +T N+L FA+
Sbjct: 329 ISPSSSHINETLNSLRFAS 347
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 94/163 (57%), Gaps = 18/163 (11%)
Query: 24 EKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLTIESSLRENSGCVKS 83
E++VE +++ + LR TA N++SSRSH I + + S N+
Sbjct: 189 EEMVEIILKKANKLR----------STASTASNEHSSRSHSIFIIHLSGS---NAKTGAH 235
Query: 84 FLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLTLTTVIRKLS---GGKRIGHIPY 140
+LNLVDLAGS R + + G RL+E +IN+SL L VI L KR HIP+
Sbjct: 236 SYGTLNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKR--HIPF 293
Query: 141 RDSKLTRILQHSLGGNARTAIICTISPALSHVEQTRNTLSFAT 183
R+SKLT +LQ+SL G+++T + ISP+ SH+ +T N+L FA+
Sbjct: 294 RNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFAS 336
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 84/139 (60%), Gaps = 8/139 (5%)
Query: 48 RQVGETALNDNSSRSHQIIRLTIESSLRENSGCVKSFLASLNLVDLAGSERASQTNADGV 107
R TA N++SSRSH I + + S N+ +LNLVDLAGSER + + G
Sbjct: 203 RSTASTASNEHSSRSHSIFIIHLSGS---NAKTGAHSYGTLNLVDLAGSERINVSQVVGD 259
Query: 108 RLKEGSHINRSLLTLTTVIRKLS---GGKRIGHIPYRDSKLTRILQHSLGGNARTAIICT 164
RL+E +I +SL L VI L KR HIP+R+SKLT +LQ+SL G+++T +
Sbjct: 260 RLRETQNIKKSLSCLGDVIHALGQPDSTKR--HIPFRNSKLTYLLQYSLTGDSKTLMFVN 317
Query: 165 ISPALSHVEQTRNTLSFAT 183
ISP+ SH+ +T N+L FA+
Sbjct: 318 ISPSSSHINETLNSLRFAS 336
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 94/163 (57%), Gaps = 18/163 (11%)
Query: 24 EKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLTIESSLRENSGCVKS 83
E++VE +++ + LR TA N++SS SH I + + S N+
Sbjct: 189 EEMVEIILKKANKLR----------STASTASNEHSSASHSIFIIHLSGS---NAKTGAH 235
Query: 84 FLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLTLTTVIRKLS---GGKRIGHIPY 140
+LNLVDLAGSER + + G RL+E +IN+SL L VI L KR HIP+
Sbjct: 236 SYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKR--HIPF 293
Query: 141 RDSKLTRILQHSLGGNARTAIICTISPALSHVEQTRNTLSFAT 183
R+SKLT +LQ+SL G+++T + ISP+ SH+ +T N+L FA+
Sbjct: 294 RNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFAS 336
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 88/152 (57%), Gaps = 11/152 (7%)
Query: 37 LRHLIGICEAQRQVGETALNDNSSRSHQIIRLTIESSLRENSGCVKSFLASLNLVDLAGS 96
L H++ + R+V T +N NSSRSH I+ + ++S K+ + +N+VDLAGS
Sbjct: 195 LHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKS---------KTHHSRMNIVDLAGS 245
Query: 97 ERASQTNADGVRLKEGSHINRSLLTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGN 156
E +T +GV +EG +IN LL++ V+ ++ G + IPYRDS LT +LQ SL
Sbjct: 246 EGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTV--IPYRDSVLTTVLQASLTAQ 303
Query: 157 ARTAIICTISPALSHVEQTRNTLSFATSAKEV 188
+ + ISP + +T +TL F TSAK++
Sbjct: 304 SYLTFLACISPHQCDLSETLSTLRFGTSAKKL 335
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 86/150 (57%), Gaps = 11/150 (7%)
Query: 37 LRHLIGICEAQRQVGETALNDNSSRSHQIIRLTIESSLRENSGCVKSFLASLNLVDLAGS 96
L H++ + R+V T +N NSSRSH I+ + ++S K+ + +N+VDLAGS
Sbjct: 195 LHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKS---------KTHHSRMNIVDLAGS 245
Query: 97 ERASQTNADGVRLKEGSHINRSLLTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGN 156
E +T +GV +EG +IN LL++ V+ ++ G + IPYRDS LT +LQ SL
Sbjct: 246 EGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTV--IPYRDSVLTTVLQASLTAQ 303
Query: 157 ARTAIICTISPALSHVEQTRNTLSFATSAK 186
+ + ISP + +T +TL F TSAK
Sbjct: 304 SYLTFLACISPHQCDLSETLSTLRFGTSAK 333
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 97/178 (54%), Gaps = 3/178 (1%)
Query: 11 LRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLTI 70
+ ++++P+ G ++ L + E L+ E R + +N NSSRSH I + +
Sbjct: 185 MTIVENPQ-GVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYL 243
Query: 71 ESSLRENSGCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLTLTTVIRKLS 130
E+ R S K + +NLVDLAGSER ++ ++G LKE ++IN+SL L I L
Sbjct: 244 EAHSRTLSE-EKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALG 302
Query: 131 GGKRIGHIPYRDSKLTRILQHSLGGNARTAIICTISPALSHVEQTRNTLSFATSAKEV 188
KR HIP+R KLT L+ SLGGN ++ I + +E+T ++L FA+ K V
Sbjct: 303 DQKR-DHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 85/144 (59%), Gaps = 9/144 (6%)
Query: 48 RQVGETALNDNSSRSHQIIRLTIESSLRENSGCVKSFLASLNLVDLAGSERASQTNADGV 107
R++G + ND SSRSH I+ + ++ + S L + +DLAGSER + T +
Sbjct: 198 RKIGVNSQNDESSRSHAILNIDLKDINKNTS------LGKIAFIDLAGSERGADTVSQNK 251
Query: 108 RLK-EGSHINRSLLTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGNARTAIICTIS 166
+ + +G++INRSLL L IR + K HIP+RDS+LT++L+ G +++ +I IS
Sbjct: 252 QTQTDGANINRSLLALKECIRAMDSDKN--HIPFRDSELTKVLRDIFVGKSKSIMIANIS 309
Query: 167 PALSHVEQTRNTLSFATSAKEVTN 190
P +S EQT NTL +++ K N
Sbjct: 310 PTISCCEQTLNTLRYSSRVKNKGN 333
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 94/172 (54%), Gaps = 8/172 (4%)
Query: 15 DDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLTIESSL 74
D ++GT + + + + + ++ R T N+ SSRSH + + I
Sbjct: 173 DHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHING-- 230
Query: 75 RENSGCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLTLTTVIRKLS---G 131
N ++ LNLVDLAGSER + + G RL+E +IN+SL L VI L+
Sbjct: 231 -RNLHTGETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDA 289
Query: 132 GKRIGHIPYRDSKLTRILQHSLGGNARTAIICTISPALSHVEQTRNTLSFAT 183
GKR +IP+R+SKLT +LQ+SL G+++T + I P +H+ +T N+L FA+
Sbjct: 290 GKR--YIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFAS 339
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 85/148 (57%), Gaps = 9/148 (6%)
Query: 40 LIGICEAQRQVGETALNDNSSRSHQIIRLTIESSLRENSGCVKSFLASLNLVDLAGSERA 99
L+ + R V TA N+ SSRSH + +L I E+S A L+LVDLAGSER
Sbjct: 229 LLHLARQNRAVARTAQNERSSRSHSVFQLQISG---EHSSRGLQCGAPLSLVDLAGSERL 285
Query: 100 SQTNADGV----RLKEGSHINRSLLTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGG 155
A G RL+E IN SL TL VI LS + H+PYR+SKLT +LQ+SLGG
Sbjct: 286 DPGLALGPGERERLRETQAINSSLSTLGLVIMALS--NKESHVPYRNSKLTYLLQNSLGG 343
Query: 156 NARTAIICTISPALSHVEQTRNTLSFAT 183
+A+ + ISP +V ++ N+L FA+
Sbjct: 344 SAKMLMFVNISPLEENVSESLNSLRFAS 371
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 116 NRSLLTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGNARTAIICTISPALSHVEQT 175
N+SL L VI L+ G + H+PYRDSK+TRILQ SLGGN RT I+ SP++ + +T
Sbjct: 1 NKSLSALGNVISALAEGTKT-HVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAET 59
Query: 176 RNTLSFATSAKEVTNNAQVNM 196
++TL F AK + N VN+
Sbjct: 60 KSTLMFGQRAKTIKNTVSVNL 80
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Query: 114 HINRSLLTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGNARTAIICTISPALSHVE 173
+IN+SL L VI L+ G + H+PYRDSK+TRILQ SL GN RT I+ SP++ +
Sbjct: 3 NINKSLSALGNVISALAEGTKT-HVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEA 61
Query: 174 QTRNTLSFATSAKEVTNNAQVNM 196
+T++TL F AK + N VN+
Sbjct: 62 ETKSTLMFGQRAKTIKNTVSVNL 84
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 2 DLLNCESGSLRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSR 61
DLL+ +L + +D + V+ E V E + +I +A R V T +N++SSR
Sbjct: 144 DLLDVSKTNLAVHEDKNRVPYVKGCTERFVSSPEEVMDVIDEGKANRHVAVTNMNEHSSR 203
Query: 62 SHQIIRLTIESSLRENSGCVKSFLASLNLVDLAGSER 98
SH I + I+ +EN K L LVDLAGSE+
Sbjct: 204 SHSIFLINIK---QENVETEKKLSGKLYLVDLAGSEK 237
>pdb|2VMK|A Chain A, Crystal Structure Of E. Coli Rnase E Apoprotein -
Catalytic Domain
pdb|2VMK|B Chain B, Crystal Structure Of E. Coli Rnase E Apoprotein -
Catalytic Domain
pdb|2VMK|C Chain C, Crystal Structure Of E. Coli Rnase E Apoprotein -
Catalytic Domain
pdb|2VMK|D Chain D, Crystal Structure Of E. Coli Rnase E Apoprotein -
Catalytic Domain
Length = 515
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 51 GETALNDNSSRSHQIIRLTIESSLRENSGCVKSF----LASLNLVDLAGSERASQTNADG 106
G + DN S S I+RL E +L+EN+ V + +AS L + + A +T DG
Sbjct: 409 GTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDG 468
Query: 107 VR 108
VR
Sbjct: 469 VR 470
>pdb|2VRT|A Chain A, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna
Fragments - Catalytic Domain
pdb|2VRT|B Chain B, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna
Fragments - Catalytic Domain
pdb|2VRT|C Chain C, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna
Fragments - Catalytic Domain
pdb|2VRT|D Chain D, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna
Fragments - Catalytic Domain
Length = 509
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 51 GETALNDNSSRSHQIIRLTIESSLRENSGCVKSF----LASLNLVDLAGSERASQTNADG 106
G + DN S S I+RL E +L+EN+ V + +AS L + + A +T DG
Sbjct: 409 GTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDG 468
Query: 107 VR 108
VR
Sbjct: 469 VR 470
>pdb|2BX2|L Chain L, Catalytic Domain Of E. Coli Rnase E
pdb|2C0B|L Chain L, Catalytic Domain Of E. Coli Rnase E In Complex With 13-Mer
Rna
pdb|2C4R|L Chain L, Catalytic Domain Of E. Coli Rnase E
Length = 517
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 51 GETALNDNSSRSHQIIRLTIESSLRENSGCVKSF----LASLNLVDLAGSERASQTNADG 106
G + DN S S I+RL E +L+EN+ V + +AS L + + A +T DG
Sbjct: 416 GTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDG 475
Query: 107 VR 108
VR
Sbjct: 476 VR 477
>pdb|2YGU|A Chain A, Crystal Structure Of Fire Ant Venom Allergen, Sol I 2
pdb|2YGU|B Chain B, Crystal Structure Of Fire Ant Venom Allergen, Sol I 2
pdb|2YGU|C Chain C, Crystal Structure Of Fire Ant Venom Allergen, Sol I 2
pdb|2YGU|D Chain D, Crystal Structure Of Fire Ant Venom Allergen, Sol I 2
pdb|2YGU|E Chain E, Crystal Structure Of Fire Ant Venom Allergen, Sol I 2
pdb|2YGU|F Chain F, Crystal Structure Of Fire Ant Venom Allergen, Sol I 2
pdb|2YGU|G Chain G, Crystal Structure Of Fire Ant Venom Allergen, Sol I 2
pdb|2YGU|H Chain H, Crystal Structure Of Fire Ant Venom Allergen, Sol I 2
Length = 125
Score = 29.3 bits (64), Expect = 9.2, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 709 PQVGKQRRLQLVNKLWTDPLNMQNVKESA 737
P V K+R +++ K+ TDP N++N K+ A
Sbjct: 51 PAVIKERSMKMCTKIITDPANVENCKKVA 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.128 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,135,535
Number of Sequences: 62578
Number of extensions: 753705
Number of successful extensions: 1857
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1670
Number of HSP's gapped (non-prelim): 75
length of query: 783
length of database: 14,973,337
effective HSP length: 106
effective length of query: 677
effective length of database: 8,340,069
effective search space: 5646226713
effective search space used: 5646226713
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)