Query 003967
Match_columns 783
No_of_seqs 324 out of 1692
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 15:10:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003967.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003967hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11995 DUF3490: Domain of un 100.0 7.7E-90 1.7E-94 658.3 14.9 161 600-765 1-161 (161)
2 KOG0245 Kinesin-like protein [ 100.0 1.4E-54 3E-59 500.1 16.1 220 1-221 153-380 (1221)
3 KOG4280 Kinesin-like protein [ 100.0 3E-53 6.4E-58 478.9 17.2 220 1-222 149-369 (574)
4 KOG0242 Kinesin-like protein [ 100.0 1.1E-52 2.4E-57 487.8 19.0 254 1-263 148-402 (675)
5 KOG0243 Kinesin-like protein [ 100.0 4.5E-52 9.8E-57 486.7 18.5 259 1-261 197-471 (1041)
6 PLN03188 kinesin-12 family pro 100.0 7.2E-48 1.6E-52 455.3 23.4 223 1-223 243-474 (1320)
7 KOG0240 Kinesin (SMY1 subfamil 100.0 2.5E-46 5.4E-51 414.8 17.7 258 1-262 148-438 (607)
8 KOG0241 Kinesin-like protein [ 100.0 1.9E-45 4.2E-50 417.7 18.8 261 1-262 157-428 (1714)
9 cd01373 KISc_KLP2_like Kinesin 100.0 8.9E-45 1.9E-49 393.2 18.7 187 1-188 149-337 (337)
10 cd01370 KISc_KIP3_like Kinesin 100.0 2.7E-44 5.8E-49 389.6 18.4 188 1-188 150-338 (338)
11 cd01364 KISc_BimC_Eg5 Kinesin 100.0 8.7E-43 1.9E-47 379.0 19.4 194 1-196 153-351 (352)
12 cd01368 KISc_KIF23_like Kinesi 100.0 6.2E-43 1.3E-47 380.1 18.1 186 1-186 145-345 (345)
13 cd01365 KISc_KIF1A_KIF1B Kines 100.0 1.3E-42 2.9E-47 378.5 19.7 195 1-195 152-356 (356)
14 cd01374 KISc_CENP_E Kinesin mo 100.0 1.3E-41 2.8E-46 365.6 18.3 187 1-188 135-321 (321)
15 cd01371 KISc_KIF3 Kinesin moto 100.0 2E-41 4.3E-46 366.3 19.4 187 1-188 146-333 (333)
16 cd01372 KISc_KIF4 Kinesin moto 100.0 6.7E-41 1.5E-45 362.4 19.5 189 1-189 142-341 (341)
17 cd01369 KISc_KHC_KIF5 Kinesin 100.0 7.6E-41 1.7E-45 360.0 19.4 184 1-188 142-325 (325)
18 cd01376 KISc_KID_like Kinesin 100.0 5.6E-41 1.2E-45 360.8 18.3 179 1-186 141-319 (319)
19 cd01367 KISc_KIF2_like Kinesin 100.0 8.4E-41 1.8E-45 360.0 17.7 177 1-186 145-322 (322)
20 cd01375 KISc_KIF9_like Kinesin 100.0 1.4E-40 3.1E-45 359.9 18.9 184 1-186 145-334 (334)
21 KOG0244 Kinesin-like protein [ 100.0 2.5E-42 5.3E-47 400.0 3.2 218 1-222 131-350 (913)
22 cd01366 KISc_C_terminal Kinesi 100.0 6.5E-40 1.4E-44 353.1 18.9 186 1-191 141-329 (329)
23 smart00129 KISc Kinesin motor, 100.0 1.2E-39 2.5E-44 351.4 19.4 194 1-195 142-335 (335)
24 PF00225 Kinesin: Kinesin moto 100.0 1.8E-39 4E-44 349.3 16.6 188 1-188 141-335 (335)
25 KOG0246 Kinesin-like protein [ 100.0 1.8E-38 3.9E-43 351.5 14.6 184 1-193 361-546 (676)
26 cd00106 KISc Kinesin motor dom 100.0 9.2E-38 2E-42 335.2 19.2 185 1-186 142-328 (328)
27 KOG0239 Kinesin (KAR3 subfamil 100.0 2.2E-38 4.8E-43 367.6 13.3 190 1-195 456-647 (670)
28 KOG0247 Kinesin-like protein [ 100.0 2.1E-36 4.5E-41 342.8 19.1 193 1-194 241-442 (809)
29 COG5059 KIP1 Kinesin-like prot 100.0 9.5E-36 2.1E-40 342.3 18.1 194 1-197 152-345 (568)
30 cd01363 Motor_domain Myosin an 100.0 2.3E-31 5E-36 265.8 11.8 134 32-167 53-186 (186)
31 COG5059 KIP1 Kinesin-like prot 89.4 0.079 1.7E-06 62.7 -1.1 80 43-129 486-565 (568)
32 PRK10884 SH3 domain-containing 76.5 7.7 0.00017 40.7 7.1 64 199-262 90-156 (206)
33 PF04420 CHD5: CHD5-like prote 74.2 16 0.00035 36.7 8.5 63 201-266 39-101 (161)
34 PF03999 MAP65_ASE1: Microtubu 65.7 4.5 9.7E-05 48.7 2.9 48 600-647 287-336 (619)
35 PF14282 FlxA: FlxA-like prote 63.4 30 0.00064 32.5 7.3 62 200-265 17-78 (106)
36 PF07989 Microtub_assoc: Micro 53.6 76 0.0017 28.3 7.8 61 201-261 6-73 (75)
37 TIGR03752 conj_TIGR03752 integ 40.0 50 0.0011 38.8 5.7 86 171-263 56-141 (472)
38 PF06005 DUF904: Protein of un 38.2 1.5E+02 0.0033 26.3 7.1 50 202-266 18-67 (72)
39 PF07106 TBPIP: Tat binding pr 32.6 1.3E+02 0.0027 30.2 6.6 18 204-221 88-105 (169)
40 PF04859 DUF641: Plant protein 30.4 1.5E+02 0.0032 29.4 6.4 66 641-708 52-117 (131)
41 PF08826 DMPK_coil: DMPK coile 28.9 2.7E+02 0.0059 24.1 7.0 32 228-259 29-60 (61)
42 COG3074 Uncharacterized protei 28.7 4.3E+02 0.0093 23.7 8.2 59 202-268 18-76 (79)
43 COG3883 Uncharacterized protei 28.6 91 0.002 34.2 5.1 60 202-262 38-97 (265)
44 PRK11637 AmiB activator; Provi 26.9 2.6E+02 0.0056 32.1 8.7 25 238-262 103-127 (428)
45 TIGR01961 NuoC_fam NADH (or F4 26.3 33 0.00071 32.5 1.1 34 736-772 70-103 (121)
46 PF09726 Macoilin: Transmembra 25.9 1.5E+02 0.0032 36.7 6.9 75 195-269 411-501 (697)
47 PRK13729 conjugal transfer pil 25.0 1.6E+02 0.0035 34.9 6.5 44 204-255 78-121 (475)
48 PLN03230 acetyl-coenzyme A car 24.8 2.1E+02 0.0046 33.4 7.4 66 177-254 56-121 (431)
49 PF10146 zf-C4H2: Zinc finger- 24.6 3.2E+02 0.007 29.3 8.3 57 201-265 31-87 (230)
50 KOG3990 Uncharacterized conser 23.8 1.4E+02 0.0031 32.6 5.4 36 202-245 225-260 (305)
51 PF14389 Lzipper-MIP1: Leucine 23.7 3.2E+02 0.007 25.0 7.0 30 233-262 56-85 (88)
52 PF14383 VARLMGL: DUF761-assoc 22.9 37 0.0008 26.1 0.6 21 727-747 5-25 (34)
53 PRK04406 hypothetical protein; 22.0 5.7E+02 0.012 22.8 8.0 50 204-261 6-55 (75)
54 PRK11637 AmiB activator; Provi 21.7 3.9E+02 0.0084 30.8 8.8 30 233-262 91-120 (428)
55 PF15372 DUF4600: Domain of un 20.9 3E+02 0.0065 27.2 6.5 62 201-262 14-82 (129)
56 PRK11546 zraP zinc resistance 20.8 1.3E+02 0.0027 30.3 4.0 27 237-263 88-114 (143)
57 PF05529 Bap31: B-cell recepto 20.7 2.8E+02 0.006 28.3 6.7 26 237-262 160-185 (192)
58 COG2433 Uncharacterized conser 20.6 1.8E+02 0.0038 35.5 5.8 29 234-262 477-505 (652)
59 PRK02119 hypothetical protein; 20.4 6.1E+02 0.013 22.5 7.8 51 204-262 4-54 (73)
No 1
>PF11995 DUF3490: Domain of unknown function (DUF3490); InterPro: IPR021881 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 160 amino acids in length. This domain is found associated with PF00225 from PFAM. This domain is found associated with PF00225 from PFAM. This domain has two conserved sequence motifs: EVE and ESA.
Probab=100.00 E-value=7.7e-90 Score=658.34 Aligned_cols=161 Identities=60% Similarity=1.007 Sum_probs=155.4
Q ss_pred hHHHHHHHHHHHhhhcccccchhhhhhhhhcCCCCCcceeeehhHHHHHHHHHHhhhCCCCCCCCCCCCCccHHHHHHHH
Q 003967 600 MFEEQRMQIVMLWHLCHVSIIHRTQFYLLFRGDPTDQIYMEVELRRLTWLEQHFAELGNASPALLGDEPAGSVASSVKAL 679 (783)
Q Consensus 600 ~F~~~q~eIieLW~~C~vslvHRTyFfLLFkGd~~D~iYmEVElRRLs~lk~~~~~~g~~~~~~~~~~~~~s~~ss~k~l 679 (783)
+||+||++||||||+|||||||||||||||||||+|+||||||||||+|||+||++ |+ || ++|++++|++||+|||
T Consensus 1 ~Fe~qq~~IIeLW~~C~VsLvHRTyFfLLFkGdpaD~iYmEVElRRLs~Lk~~fs~-~~--~~-~~~~~~~s~~sS~kaL 76 (161)
T PF11995_consen 1 EFERQQQEIIELWHACNVSLVHRTYFFLLFKGDPADSIYMEVELRRLSFLKETFSE-GG--QA-AGGGHTLSLASSIKAL 76 (161)
T ss_pred ChHHHHHHHHHHHHhcCcchhhhhhhhheecCCcccceEEEeehHHHHHHHHHhcc-CC--cc-cCCCCcccHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999 44 33 3455899999999999
Q ss_pred HHHHHHHHHHHhhhCCHHHHHHHHhhcCCCCCCccchhhhhhhccCCCcchhhHHHHHHHHHHHhhcccCCcchhhhhhc
Q 003967 680 KQEREYLAKRVSSKLTAEERELLYMKWDIPQVGKQRRLQLVNKLWTDPLNMQNVKESAEIVAQLVGFCESGEHASKEMFE 759 (783)
Q Consensus 680 ~rEr~~l~k~m~~rl~~~ere~ly~kwgi~l~~k~Rrlql~~~lWt~~~d~~hv~eSA~~Vaklvgf~e~~~~~~kemfg 759 (783)
+|||+||||||++|||.+|||+||.||||||+||||||||||+|||||+||+||+|||+|||||||||||| +|+|||||
T Consensus 77 ~rER~~L~k~m~~rls~eere~ly~kWgI~l~sK~RrlQL~~~LWt~~~d~~Hv~eSA~lVAkLvgf~e~g-~~~KEMFg 155 (161)
T PF11995_consen 77 RREREMLAKQMQKRLSREEREELYKKWGIPLDSKQRRLQLANRLWTDTKDMEHVRESAELVAKLVGFVEPG-QASKEMFG 155 (161)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhcccc-ccHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred ccccCC
Q 003967 760 LNFANP 765 (783)
Q Consensus 760 l~f~~~ 765 (783)
|||+||
T Consensus 156 LnF~~~ 161 (161)
T PF11995_consen 156 LNFTPP 161 (161)
T ss_pred cCCCCC
Confidence 999997
No 2
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.4e-54 Score=500.05 Aligned_cols=220 Identities=42% Similarity=0.601 Sum_probs=204.8
Q ss_pred CCCCC-CC-CCCceEEEcCCCCeEEcCcEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCceeEEEEEEEeeeccCC
Q 003967 1 MDLLN-CE-SGSLRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLTIESSLRENS 78 (783)
Q Consensus 1 ~DLL~-p~-~~~L~IrEDp~~G~~VegLtev~V~S~eel~~LL~~G~~~R~v~~T~~N~~SSRSH~IftI~Ie~~~~~~~ 78 (783)
+|||+ |. +++|+|||||.-|+||++|+...|.|+.|+..+|..|+++|++++|.||++|||||+||+|++.+....+.
T Consensus 153 rDLL~~p~~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~ 232 (1221)
T KOG0245|consen 153 RDLLNAPKSKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQD 232 (1221)
T ss_pred HHHhhCCCCCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeecccc
Confidence 59998 54 45999999999999999999999999999999999999999999999999999999999999999876655
Q ss_pred Cc-ceeeeeeeeeecCCCCccccccCccchhhHHhHHhhHhHHHHHHHHHHhhcC-----CCCCcccCCCCcchhhcccc
Q 003967 79 GC-VKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLTLTTVIRKLSGG-----KRIGHIPYRDSKLTRILQHS 152 (783)
Q Consensus 79 ~~-~~s~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~~-----~k~~hIPYRDSKLTrLLqdS 152 (783)
.. ....+|+|+|||||||||++.+++.|.|+|||.+|||||.+||.||.||++. ++..+||||||.||+||+++
T Consensus 233 ~~l~sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEn 312 (1221)
T KOG0245|consen 233 TGLDSEKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKEN 312 (1221)
T ss_pred CCCcceeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHh
Confidence 43 3457899999999999999999999999999999999999999999999862 24459999999999999999
Q ss_pred cCCCCccceEeccCCCCCCHHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHhcCC
Q 003967 153 LGGNARTAIICTISPALSHVEQTRNTLSFATSAKEVTNNAQVNMVVSDKRLVKQLQKEVARLEAELRSP 221 (783)
Q Consensus 153 LGGNskT~mIatVSPs~~~~eETLsTLrFAsRAk~Ikn~p~vN~~~s~~~lIk~Lq~EIa~Lk~eL~~~ 221 (783)
||||+||+|||+|||+..||+|||+||+||.|||+|+|+++||+..++ .||++|++||++|+..|+..
T Consensus 313 LGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpna-KLIRELreEv~rLksll~~~ 380 (1221)
T KOG0245|consen 313 LGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNA-KLIRELREEVARLKSLLRAQ 380 (1221)
T ss_pred cCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccH-HHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999665 68999999999999999753
No 3
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3e-53 Score=478.90 Aligned_cols=220 Identities=45% Similarity=0.646 Sum_probs=206.4
Q ss_pred CCCCCCCCC-CceEEEcCCCCeEEcCcEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCceeEEEEEEEeeeccCCC
Q 003967 1 MDLLNCESG-SLRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLTIESSLRENSG 79 (783)
Q Consensus 1 ~DLL~p~~~-~L~IrEDp~~G~~VegLtev~V~S~eel~~LL~~G~~~R~v~~T~~N~~SSRSH~IftI~Ie~~~~~~~~ 79 (783)
+|||++..+ .|.|+++|..|+||+||+++.|.++++++.+|..|.++|++++|.||..|||||+||+|+|++......+
T Consensus 149 ~DLL~~~~~~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~ 228 (574)
T KOG4280|consen 149 RDLLSPVNPKGLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGG 228 (574)
T ss_pred HHHhCccCcCCceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCC
Confidence 699999884 9999999999999999999999999999999999999999999999999999999999999994443445
Q ss_pred cceeeeeeeeeecCCCCccccccCccchhhHHhHHhhHhHHHHHHHHHHhhcCCCCCcccCCCCcchhhcccccCCCCcc
Q 003967 80 CVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGNART 159 (783)
Q Consensus 80 ~~~s~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~~~k~~hIPYRDSKLTrLLqdSLGGNskT 159 (783)
.....+|+|||||||||||..++++.|.|++|+.+||+||++||+||.+|+++.+ +||||||||||+||||||||||+|
T Consensus 229 ~~~~~~~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~-~HIPYRdSkLT~LLqdSLGGN~kT 307 (574)
T KOG4280|consen 229 LMSGRSSKLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSK-THIPYRDSKLTRLLQDSLGGNSKT 307 (574)
T ss_pred ccccccceeeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhcccc-CCCCcchhHHHHHHHHHcCCCceE
Confidence 5566789999999999999999999999999999999999999999999998654 599999999999999999999999
Q ss_pred ceEeccCCCCCCHHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHhcCCC
Q 003967 160 AIICTISPALSHVEQTRNTLSFATSAKEVTNNAQVNMVVSDKRLVKQLQKEVARLEAELRSPD 222 (783)
Q Consensus 160 ~mIatVSPs~~~~eETLsTLrFAsRAk~Ikn~p~vN~~~s~~~lIk~Lq~EIa~Lk~eL~~~~ 222 (783)
+|||||+|+..+++||++||+||+|||.|+|+|.+|++.. .++++.|++||++|+.++....
T Consensus 308 ~mianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~ined~~-~~~~~~lq~ei~~Lk~~l~~~~ 369 (574)
T KOG4280|consen 308 TMIANVSPSSDNYEETLSTLRFAQRAKAIKNKPVINEDPK-DALLRELQEEIERLKKELDPGG 369 (574)
T ss_pred EEEEecCchhhhhHHHHHHHHHHHHHHHhhccccccCCcc-hhhHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999999965 5789999999999999997643
No 4
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-52 Score=487.75 Aligned_cols=254 Identities=59% Similarity=0.775 Sum_probs=234.0
Q ss_pred CCCCCCCCCCceEEEcCCCCeEEcCcEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCceeEEEEEEEeeeccCCCc
Q 003967 1 MDLLNCESGSLRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLTIESSLRENSGC 80 (783)
Q Consensus 1 ~DLL~p~~~~L~IrEDp~~G~~VegLtev~V~S~eel~~LL~~G~~~R~v~~T~~N~~SSRSH~IftI~Ie~~~~~~~~~ 80 (783)
||||+|+.++|+|+||+.+|++|.||+++.|.|++++..||..|+.+|+++.|.+|..|||||+||+|+|++..+...
T Consensus 148 ~DLL~~~~~~L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~-- 225 (675)
T KOG0242|consen 148 RDLLNPDGGDLRLREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREAS-- 225 (675)
T ss_pred ccccCCCCCCceEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEecccccc--
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999876554
Q ss_pred ceeeeeeeeeecCCCCccccccCccchhhHHhHHhhHhHHHHHHHHHHhhcCCCCCcccCCCCcchhhcccccCCCCccc
Q 003967 81 VKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGNARTA 160 (783)
Q Consensus 81 ~~s~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~~~k~~hIPYRDSKLTrLLqdSLGGNskT~ 160 (783)
+..++|+|||||||||+.++++.|.|++||++||+||++||+||++|+++.+..||||||||||||||++|||||+|+
T Consensus 226 --~~~s~L~lIDLAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~ 303 (675)
T KOG0242|consen 226 --SRVSKLNLIDLAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTA 303 (675)
T ss_pred --chhheehhhhhhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEE
Confidence 167899999999999999999999999999999999999999999999987778999999999999999999999999
Q ss_pred eEeccCCCCCCHHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHhcCCCCCCchHHhhhhHHHHHHH
Q 003967 161 IICTISPALSHVEQTRNTLSFATSAKEVTNNAQVNMVVSDKRLVKQLQKEVARLEAELRSPDPSSSSCFRSLLMEKDLKI 240 (783)
Q Consensus 161 mIatVSPs~~~~eETLsTLrFAsRAk~Ikn~p~vN~~~s~~~lIk~Lq~EIa~Lk~eL~~~~~~~s~~~~~~l~ek~~~i 240 (783)
|||||+|+..+|+||.+||+||+|||+|++++.+|++..+..+++.++++++.|+.++.......... .+.+..+
T Consensus 304 ~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~~~~-----~~~~~~~ 378 (675)
T KOG0242|consen 304 IIATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELERLKKKLEPE-----REQELLI 378 (675)
T ss_pred EEEEeCchhhHHHHHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHhhccccccc-----hhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999997754433111 2566777
Q ss_pred HHHH-HHHHHHHHHHHHHhHHHHH
Q 003967 241 QQLE-REVKELKRQRDLAQPQFER 263 (783)
Q Consensus 241 ~qLe-~ei~eLk~qrd~aq~~le~ 263 (783)
++++ ++..++..+++.++...+.
T Consensus 379 ~~~e~~~~~~~~~~~~~~~~~~~~ 402 (675)
T KOG0242|consen 379 QKLEKEEVEELLPQRSEIQSLVEL 402 (675)
T ss_pred hHhhhhhHhhhhhhhhHHHHHHHH
Confidence 8888 8888888888888887763
No 5
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.5e-52 Score=486.74 Aligned_cols=259 Identities=39% Similarity=0.551 Sum_probs=230.9
Q ss_pred CCCCCCCCC---CceEEEcC-----CCCeEEcCcEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCceeEEEEEEEe
Q 003967 1 MDLLNCESG---SLRLLDDP-----EKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLTIES 72 (783)
Q Consensus 1 ~DLL~p~~~---~L~IrEDp-----~~G~~VegLtev~V~S~eel~~LL~~G~~~R~v~~T~~N~~SSRSH~IftI~Ie~ 72 (783)
+|||+|+.. .+++.+++ .+|++|.||.|+.|.++.|++.||..|...|++++|.||..|||||+||+|+|..
T Consensus 197 ~DLLa~~~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhi 276 (1041)
T KOG0243|consen 197 TDLLASEDTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHI 276 (1041)
T ss_pred HHhcCCccccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEE
Confidence 599988654 67777776 6899999999999999999999999999999999999999999999999999988
Q ss_pred eeccCCCcceeeeeeeeeecCCCCccccccCccchhhHHhHHhhHhHHHHHHHHHHhhcCCCCCcccCCCCcchhhcccc
Q 003967 73 SLRENSGCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHS 152 (783)
Q Consensus 73 ~~~~~~~~~~s~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~~~k~~hIPYRDSKLTrLLqdS 152 (783)
......|......|+|+||||||||..+++|+.+.|.+|++.||+||++||+||+||.+ +.+|||||+||||||||||
T Consensus 277 ke~t~~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe--~s~HIPYRESKLTRLLQDS 354 (1041)
T KOG0243|consen 277 KENTPEGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVE--HSGHIPYRESKLTRLLQDS 354 (1041)
T ss_pred ecCCCcchhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHc--cCCCCCchHHHHHHHHHHH
Confidence 76666665566789999999999999999999999999999999999999999999987 6689999999999999999
Q ss_pred cCCCCccceEeccCCCCCCHHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHhcCCCCCCchHH---
Q 003967 153 LGGNARTAIICTISPALSHVEQTRNTLSFATSAKEVTNNAQVNMVVSDKRLVKQLQKEVARLEAELRSPDPSSSSCF--- 229 (783)
Q Consensus 153 LGGNskT~mIatVSPs~~~~eETLsTLrFAsRAk~Ikn~p~vN~~~s~~~lIk~Lq~EIa~Lk~eL~~~~~~~s~~~--- 229 (783)
|||..||+|||||||+..+++||++||.||.|||.|+|+|.+|..+..+.+++.|-.||++|+.+|...+...+-++
T Consensus 355 LGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReKnGvyisee 434 (1041)
T KOG0243|consen 355 LGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEE 434 (1041)
T ss_pred hCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988776654322
Q ss_pred -----hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 003967 230 -----RSLLMEKDLKIQQLEREVKELKRQRDLAQPQF 261 (783)
Q Consensus 230 -----~~~l~ek~~~i~qLe~ei~eLk~qrd~aq~~l 261 (783)
.....++..+|++++.++..+++++...+..+
T Consensus 435 ~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~ 471 (1041)
T KOG0243|consen 435 RYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELY 471 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12344566777777777777777766665544
No 6
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=7.2e-48 Score=455.32 Aligned_cols=223 Identities=41% Similarity=0.587 Sum_probs=203.2
Q ss_pred CCCCCCCCCCceEEEcCCCCeEEcCcEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCceeEEEEEEEeeeccCC-C
Q 003967 1 MDLLNCESGSLRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLTIESSLRENS-G 79 (783)
Q Consensus 1 ~DLL~p~~~~L~IrEDp~~G~~VegLtev~V~S~eel~~LL~~G~~~R~v~~T~~N~~SSRSH~IftI~Ie~~~~~~~-~ 79 (783)
||||++....|.|++|+.+|++|.||+++.|.|++++..+|..|..+|++++|.+|..|||||+||+|+|++...... +
T Consensus 243 ~DLLsp~~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg 322 (1320)
T PLN03188 243 TDLLDPSQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADG 322 (1320)
T ss_pred eeccccccCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCCC
Confidence 799999888999999999999999999999999999999999999999999999999999999999999988654322 2
Q ss_pred cceeeeeeeeeecCCCCccccccCccchhhHHhHHhhHhHHHHHHHHHHhhcC---CCCCcccCCCCcchhhcccccCCC
Q 003967 80 CVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLTLTTVIRKLSGG---KRIGHIPYRDSKLTRILQHSLGGN 156 (783)
Q Consensus 80 ~~~s~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~~---~k~~hIPYRDSKLTrLLqdSLGGN 156 (783)
......|+|+|||||||||...+++.|.+++|+++||+||++||+||.+|+.. ++..||||||||||+||||+||||
T Consensus 323 ~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGN 402 (1320)
T PLN03188 323 LSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGN 402 (1320)
T ss_pred CcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCC
Confidence 22346799999999999999999999999999999999999999999999752 345699999999999999999999
Q ss_pred CccceEeccCCCCCCHHHHHHHHHHHHHhcccccccccccccCH-----HHHHHHHHHHHHHHHHHhcCCCC
Q 003967 157 ARTAIICTISPALSHVEQTRNTLSFATSAKEVTNNAQVNMVVSD-----KRLVKQLQKEVARLEAELRSPDP 223 (783)
Q Consensus 157 skT~mIatVSPs~~~~eETLsTLrFAsRAk~Ikn~p~vN~~~s~-----~~lIk~Lq~EIa~Lk~eL~~~~~ 223 (783)
|+|+|||||||+..+++||++||+||+||+.|+|.|.+|..+.+ ..+|++|+.|+.+|+.....+..
T Consensus 403 SKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~vn~LrelIr~Lk~EL~rLK~~~~~p~~ 474 (1320)
T PLN03188 403 AKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFLREVIRQLRDELQRVKANGNNPTN 474 (1320)
T ss_pred ceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999987543 34789999999999998766554
No 7
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=2.5e-46 Score=414.75 Aligned_cols=258 Identities=34% Similarity=0.508 Sum_probs=218.6
Q ss_pred CCCCCCCCCCceEEEcCCCCeEEcCcEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCceeEEEEEEEeeeccCCCc
Q 003967 1 MDLLNCESGSLRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLTIESSLRENSGC 80 (783)
Q Consensus 1 ~DLL~p~~~~L~IrEDp~~G~~VegLtev~V~S~eel~~LL~~G~~~R~v~~T~~N~~SSRSH~IftI~Ie~~~~~~~~~ 80 (783)
+|||+|.+.+|.|++|...++||+|+++..|.+++++++.|..|..+|.++.|.||.+|||||.||+|+|.+......
T Consensus 148 ~DLL~~~k~nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~~-- 225 (607)
T KOG0240|consen 148 RDLLDPEKTNLSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVEDK-- 225 (607)
T ss_pred HHHhCcccCCceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccch--
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999755433
Q ss_pred ceeeeeeeeeecCCCCccccccCccchhhHHhHHhhHhHHHHHHHHHHhhcCCCCCcccCCCCcchhhcccccCCCCccc
Q 003967 81 VKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGNARTA 160 (783)
Q Consensus 81 ~~s~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~~~k~~hIPYRDSKLTrLLqdSLGGNskT~ 160 (783)
....|+|+||||||||+++++++.|.-+.|+++||+||.|||+||++|++| ...|||||||||||||||+|||||||.
T Consensus 226 -~~~~gkLyLVDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g-~~shipYRDSKLTRILqdSLGGNsRTt 303 (607)
T KOG0240|consen 226 -RKLSGKLYLVDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEG-PKSHIPYRDSKLTRILQDSLGGNSRTT 303 (607)
T ss_pred -hhccccEEEEEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcC-CCCCCcchhhHHHHHHHHHhCCCcceE
Confidence 457899999999999999999999999999999999999999999999986 468999999999999999999999999
Q ss_pred eEeccCCCCCCHHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHH----------HHHHHHHhcCCCCCC---c-
Q 003967 161 IICTISPALSHVEQTRNTLSFATSAKEVTNNAQVNMVVSDKRLVKQLQKE----------VARLEAELRSPDPSS---S- 226 (783)
Q Consensus 161 mIatVSPs~~~~eETLsTLrFAsRAk~Ikn~p~vN~~~s~~~lIk~Lq~E----------Ia~Lk~eL~~~~~~~---s- 226 (783)
||+|++|+..+-.||.+||+|+.|||.|+|.+.+|...+.+...+.|..+ +..+..+|..-.... .
T Consensus 304 lIi~csPss~n~~ET~STl~fg~rak~ikN~v~~n~e~~~e~~~r~~e~~kd~~~~~~~~~~~~~~sl~~~~~~E~~~~d 383 (607)
T KOG0240|consen 304 LIICCSPSSLNEAETKSTLRFGNRAKTIKNTVWVNLELTAEEWKRKLEKKKDKNVALKEELEKLRNSLKRWRNGEEVKED 383 (607)
T ss_pred EEEecCCccccccccccchhhccccccccchhhhhhHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhcccCcccch
Confidence 99999999999999999999999999999999999998888777766543 333333333221111 0
Q ss_pred hHH--h------hhh--------HH---HHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003967 227 SCF--R------SLL--------ME---KDLKIQQLEREVKELKRQRDLAQPQFE 262 (783)
Q Consensus 227 ~~~--~------~~l--------~e---k~~~i~qLe~ei~eLk~qrd~aq~~le 262 (783)
..+ . ..+ .. .+.....+++++..|.+|+|....+++
T Consensus 384 e~~~~~~~~k~~~~~~~~~~~i~~~~~~~~~~~~~~~e~~~~L~qqlD~kd~~~n 438 (607)
T KOG0240|consen 384 EDFSLKEEAKMSAILSEEEMSITKLKGSLEEEEDILTERIESLYQQLDQKDDQIN 438 (607)
T ss_pred hhhhHHHHHHhhhhhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 000 01 134556688888888888887776665
No 8
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.9e-45 Score=417.73 Aligned_cols=261 Identities=36% Similarity=0.533 Sum_probs=220.9
Q ss_pred CCCCCCCCC--CceEEEcCCCCeEEcCcEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCceeEEEEEEEeeeccCC
Q 003967 1 MDLLNCESG--SLRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLTIESSLRENS 78 (783)
Q Consensus 1 ~DLL~p~~~--~L~IrEDp~~G~~VegLtev~V~S~eel~~LL~~G~~~R~v~~T~~N~~SSRSH~IftI~Ie~~~~~~~ 78 (783)
||||.|... .|++++|..-|+||.||++..|.|++|+-.++..|+++|++++|.||..|||||+||.|.|.+......
T Consensus 157 ~DLLdPk~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~k 236 (1714)
T KOG0241|consen 157 RDLLDPKGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLK 236 (1714)
T ss_pred hhhhCCCCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccc
Confidence 799998654 899999999999999999999999999999999999999999999999999999999999999755432
Q ss_pred -CcceeeeeeeeeecCCCCccccccCccchhhHHhHHhhHhHHHHHHHHHHhhcCC----CCCcccCCCCcchhhccccc
Q 003967 79 -GCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLTLTTVIRKLSGGK----RIGHIPYRDSKLTRILQHSL 153 (783)
Q Consensus 79 -~~~~s~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~~~----k~~hIPYRDSKLTrLLqdSL 153 (783)
+.....+|+|.+||||||||++++++.|.|++||.+||+||.+||.||.+|++.. +..+||||||.||+||||+|
T Consensus 237 tg~SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~L 316 (1714)
T KOG0241|consen 237 TGHSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNL 316 (1714)
T ss_pred cCcchhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhc
Confidence 2223368999999999999999999999999999999999999999999998632 34599999999999999999
Q ss_pred CCCCccceEeccCCCCCCHHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHhcCCCCCCchHHhhhh
Q 003967 154 GGNARTAIICTISPALSHVEQTRNTLSFATSAKEVTNNAQVNMVVSDKRLVKQLQKEVARLEAELRSPDPSSSSCFRSLL 233 (783)
Q Consensus 154 GGNskT~mIatVSPs~~~~eETLsTLrFAsRAk~Ikn~p~vN~~~s~~~lIk~Lq~EIa~Lk~eL~~~~~~~s~~~~~~l 233 (783)
||||+|+||+||||+..+|+||++||+||.|||.|+|++.+|....+ ..|++|++|+..|..+|..........++..+
T Consensus 317 GGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpna-rvirElReEve~lr~qL~~ae~~~~~el~e~l 395 (1714)
T KOG0241|consen 317 GGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNA-RVIRELREEVEKLREQLEQAEAMKLPELKEKL 395 (1714)
T ss_pred CCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchH-HHHHHHHHHHHHHHHHHhhhhhccchHHHHHH
Confidence 99999999999999999999999999999999999999999998544 67999999999999999886554444555555
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHhHHHH
Q 003967 234 MEKDLKIQQL----EREVKELKRQRDLAQPQFE 262 (783)
Q Consensus 234 ~ek~~~i~qL----e~ei~eLk~qrd~aq~~le 262 (783)
.+.+.-|+++ |+.+..+..+-...|++|+
T Consensus 396 ~esekli~ei~~twEEkl~ktE~in~erq~~L~ 428 (1714)
T KOG0241|consen 396 EESEKLIKEITVTWEEKLRKTEEINQERQAQLE 428 (1714)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444332 3333333444444444443
No 9
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=8.9e-45 Score=393.21 Aligned_cols=187 Identities=45% Similarity=0.591 Sum_probs=174.4
Q ss_pred CCCCCCCCCCceEEEcCCCCeEEcCcEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCceeEEEEEEEeeeccCCCc
Q 003967 1 MDLLNCESGSLRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLTIESSLRENSGC 80 (783)
Q Consensus 1 ~DLL~p~~~~L~IrEDp~~G~~VegLtev~V~S~eel~~LL~~G~~~R~v~~T~~N~~SSRSH~IftI~Ie~~~~~~~~~ 80 (783)
||||++....|+|++|+.+|++|+||+++.|.|++|+.++|..|..+|++++|.+|..|||||+||+|+|.+.......
T Consensus 149 ~DLL~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~- 227 (337)
T cd01373 149 TDLLDPTSRNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASS- 227 (337)
T ss_pred eeCCCCCCCCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCC-
Confidence 7999998889999999999999999999999999999999999999999999999999999999999999986544332
Q ss_pred ceeeeeeeeeecCCCCccccccCccchhhHHhHHhhHhHHHHHHHHHHhhcC--CCCCcccCCCCcchhhcccccCCCCc
Q 003967 81 VKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLTLTTVIRKLSGG--KRIGHIPYRDSKLTRILQHSLGGNAR 158 (783)
Q Consensus 81 ~~s~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~~--~k~~hIPYRDSKLTrLLqdSLGGNsk 158 (783)
.....|+|+|||||||||..++++.|.+++|+++||+||++|++||.+|++. .+..||||||||||+||+|+|||||+
T Consensus 228 ~~~~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~ 307 (337)
T cd01373 228 TNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAK 307 (337)
T ss_pred CcEEEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCce
Confidence 2345799999999999999999999999999999999999999999999852 23579999999999999999999999
Q ss_pred cceEeccCCCCCCHHHHHHHHHHHHHhccc
Q 003967 159 TAIICTISPALSHVEQTRNTLSFATSAKEV 188 (783)
Q Consensus 159 T~mIatVSPs~~~~eETLsTLrFAsRAk~I 188 (783)
|+|||||||+..+++||++||+||+|||.|
T Consensus 308 t~~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 308 TTIIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred EEEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999986
No 10
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=2.7e-44 Score=389.61 Aligned_cols=188 Identities=47% Similarity=0.671 Sum_probs=176.5
Q ss_pred CCCCCCCCCCceEEEcCCCCeEEcCcEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCceeEEEEEEEeeeccCCCc
Q 003967 1 MDLLNCESGSLRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLTIESSLRENSGC 80 (783)
Q Consensus 1 ~DLL~p~~~~L~IrEDp~~G~~VegLtev~V~S~eel~~LL~~G~~~R~v~~T~~N~~SSRSH~IftI~Ie~~~~~~~~~ 80 (783)
||||++...+|+|++|+.+|++|.|++++.|.|+++++++|..|.++|++++|.+|..|||||+||+|+|.+........
T Consensus 150 ~DLL~~~~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~ 229 (338)
T cd01370 150 RDLLSPSSGPLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASIN 229 (338)
T ss_pred EECCCCCCCCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCC
Confidence 69999888899999999999999999999999999999999999999999999999999999999999999876654333
Q ss_pred ceeeeeeeeeecCCCCccccccCccchhhHHhHHhhHhHHHHHHHHHHhhcCCC-CCcccCCCCcchhhcccccCCCCcc
Q 003967 81 VKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLTLTTVIRKLSGGKR-IGHIPYRDSKLTRILQHSLGGNART 159 (783)
Q Consensus 81 ~~s~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~~~k-~~hIPYRDSKLTrLLqdSLGGNskT 159 (783)
.....|+|+|||||||||..+++..|.+++|+++||+||++|++||.+|+.+.+ ..||||||||||+||+|+|||||+|
T Consensus 230 ~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t 309 (338)
T cd01370 230 QQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKT 309 (338)
T ss_pred CcEEEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeE
Confidence 456789999999999999999999999999999999999999999999987542 4799999999999999999999999
Q ss_pred ceEeccCCCCCCHHHHHHHHHHHHHhccc
Q 003967 160 AIICTISPALSHVEQTRNTLSFATSAKEV 188 (783)
Q Consensus 160 ~mIatVSPs~~~~eETLsTLrFAsRAk~I 188 (783)
+||+||||+..+++||++||+||+|||+|
T Consensus 310 ~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 310 VMIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred EEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999986
No 11
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=8.7e-43 Score=379.03 Aligned_cols=194 Identities=44% Similarity=0.608 Sum_probs=181.1
Q ss_pred CCCCCCC---CCCceEEEc--CCCCeEEcCcEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCceeEEEEEEEeeec
Q 003967 1 MDLLNCE---SGSLRLLDD--PEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLTIESSLR 75 (783)
Q Consensus 1 ~DLL~p~---~~~L~IrED--p~~G~~VegLtev~V~S~eel~~LL~~G~~~R~v~~T~~N~~SSRSH~IftI~Ie~~~~ 75 (783)
||||++. ..+|+|+++ ..+|++|+|++++.|.|++++..+|..|.++|++++|.+|..|||||+||+|+|.+...
T Consensus 153 ~DLL~~~~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~ 232 (352)
T cd01364 153 FDLLSSESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKET 232 (352)
T ss_pred eeCCCCccccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEecc
Confidence 6999986 469999999 58999999999999999999999999999999999999999999999999999998765
Q ss_pred cCCCcceeeeeeeeeecCCCCccccccCccchhhHHhHHhhHhHHHHHHHHHHhhcCCCCCcccCCCCcchhhcccccCC
Q 003967 76 ENSGCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGG 155 (783)
Q Consensus 76 ~~~~~~~s~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~~~k~~hIPYRDSKLTrLLqdSLGG 155 (783)
...+......|+|+||||||||+..+.++.+.+++|+..||+||++|++||.+|+.+ ..|||||+||||+||+|+|||
T Consensus 233 ~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~--~~~vpyR~S~LT~lL~~~Lgg 310 (352)
T cd01364 233 TISGEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEK--SPHIPYRESKLTRLLQDSLGG 310 (352)
T ss_pred CCCCCccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcC--CCCCCCcccHHHHHHHHhcCC
Confidence 444433446799999999999999999999999999999999999999999999873 479999999999999999999
Q ss_pred CCccceEeccCCCCCCHHHHHHHHHHHHHhccccccccccc
Q 003967 156 NARTAIICTISPALSHVEQTRNTLSFATSAKEVTNNAQVNM 196 (783)
Q Consensus 156 NskT~mIatVSPs~~~~eETLsTLrFAsRAk~Ikn~p~vN~ 196 (783)
||+|+||+||||+..+++||++||+||++|++|+|.|.+|.
T Consensus 311 ~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 311 RTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred CceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 99999999999999999999999999999999999999986
No 12
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=6.2e-43 Score=380.06 Aligned_cols=186 Identities=35% Similarity=0.519 Sum_probs=171.4
Q ss_pred CCCCCCCCC------CceEEEcCCCCeEEcCcEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCceeEEEEEEEeee
Q 003967 1 MDLLNCESG------SLRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLTIESSL 74 (783)
Q Consensus 1 ~DLL~p~~~------~L~IrEDp~~G~~VegLtev~V~S~eel~~LL~~G~~~R~v~~T~~N~~SSRSH~IftI~Ie~~~ 74 (783)
||||++... +|.|++|+.+|++|+||+++.|.|++|+..+|..|.++|++++|.+|..|||||+||+|+|.+..
T Consensus 145 ~DLL~~~~~~~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~ 224 (345)
T cd01368 145 YDLLEDSPSSTKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAP 224 (345)
T ss_pred EeCCCCccccccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEec
Confidence 699987543 79999999999999999999999999999999999999999999999999999999999999876
Q ss_pred ccCCCc-----ceeeeeeeeeecCCCCccccccCccchhhHHhHHhhHhHHHHHHHHHHhhcCC----CCCcccCCCCcc
Q 003967 75 RENSGC-----VKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLTLTTVIRKLSGGK----RIGHIPYRDSKL 145 (783)
Q Consensus 75 ~~~~~~-----~~s~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~~~----k~~hIPYRDSKL 145 (783)
....+. .....|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|++.+ +..|||||||||
T Consensus 225 ~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkL 304 (345)
T cd01368 225 GDSDGDVDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKL 304 (345)
T ss_pred cCcccccccCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHH
Confidence 543221 23467999999999999999999999999999999999999999999998632 467999999999
Q ss_pred hhhcccccCCCCccceEeccCCCCCCHHHHHHHHHHHHHhc
Q 003967 146 TRILQHSLGGNARTAIICTISPALSHVEQTRNTLSFATSAK 186 (783)
Q Consensus 146 TrLLqdSLGGNskT~mIatVSPs~~~~eETLsTLrFAsRAk 186 (783)
|+||+|+|||||+|+||+||||+..+++||++||+||.+|+
T Consensus 305 T~lL~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 305 THLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred HHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999985
No 13
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=1.3e-42 Score=378.50 Aligned_cols=195 Identities=43% Similarity=0.609 Sum_probs=181.2
Q ss_pred CCCCCCCC---CCceEEEcCCCCeEEcCcEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCceeEEEEEEEeeeccC
Q 003967 1 MDLLNCES---GSLRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLTIESSLREN 77 (783)
Q Consensus 1 ~DLL~p~~---~~L~IrEDp~~G~~VegLtev~V~S~eel~~LL~~G~~~R~v~~T~~N~~SSRSH~IftI~Ie~~~~~~ 77 (783)
||||++.. ..|+|++|+.+|++|+|++++.|.|++++..+|..|.++|.+++|.+|..|||||+||+|+|.+.....
T Consensus 152 ~DLL~~~~~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~ 231 (356)
T cd01365 152 RDLLNPKKKNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDK 231 (356)
T ss_pred eeCCCCCccCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEeccc
Confidence 79999874 589999999999999999999999999999999999999999999999999999999999999865543
Q ss_pred C-CcceeeeeeeeeecCCCCccccccCccchhhHHhHHhhHhHHHHHHHHHHhhcCC------CCCcccCCCCcchhhcc
Q 003967 78 S-GCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLTLTTVIRKLSGGK------RIGHIPYRDSKLTRILQ 150 (783)
Q Consensus 78 ~-~~~~s~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~~~------k~~hIPYRDSKLTrLLq 150 (783)
. .......|+|+|||||||||...++..|.+++|+..||+||++|++||.+|+.+. +..||||||||||+||+
T Consensus 232 ~~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~ 311 (356)
T cd01365 232 ETDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLK 311 (356)
T ss_pred CCCCCceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHH
Confidence 2 2234568999999999999999999999999999999999999999999998743 35799999999999999
Q ss_pred cccCCCCccceEeccCCCCCCHHHHHHHHHHHHHhcccccccccc
Q 003967 151 HSLGGNARTAIICTISPALSHVEQTRNTLSFATSAKEVTNNAQVN 195 (783)
Q Consensus 151 dSLGGNskT~mIatVSPs~~~~eETLsTLrFAsRAk~Ikn~p~vN 195 (783)
++||||++|+||+||+|...+++||++||+||++|++|+|.|++|
T Consensus 312 ~~lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 312 ENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred HhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 999999999999999999999999999999999999999999886
No 14
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=1.3e-41 Score=365.60 Aligned_cols=187 Identities=63% Similarity=0.838 Sum_probs=176.2
Q ss_pred CCCCCCCCCCceEEEcCCCCeEEcCcEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCceeEEEEEEEeeeccCCCc
Q 003967 1 MDLLNCESGSLRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLTIESSLRENSGC 80 (783)
Q Consensus 1 ~DLL~p~~~~L~IrEDp~~G~~VegLtev~V~S~eel~~LL~~G~~~R~v~~T~~N~~SSRSH~IftI~Ie~~~~~~~~~ 80 (783)
||||++...+|+|++|+.+|++|.|++++.|.|++++..+|..|.++|+++.|.+|..|||||+||+|+|.+......+.
T Consensus 135 ~DLL~~~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~ 214 (321)
T cd01374 135 KDLLSPSPQELRIREDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSES 214 (321)
T ss_pred EEccCCCCCCceEEECCCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCC
Confidence 69999988899999999999999999999999999999999999999999999999999999999999999976655334
Q ss_pred ceeeeeeeeeecCCCCccccccCccchhhHHhHHhhHhHHHHHHHHHHhhcCCCCCcccCCCCcchhhcccccCCCCccc
Q 003967 81 VKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGNARTA 160 (783)
Q Consensus 81 ~~s~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~~~k~~hIPYRDSKLTrLLqdSLGGNskT~ 160 (783)
.....|+|+|||||||||..+.+ .+.+++|+.+||+||++|++||.+|+.+++..|||||+||||+||+++|||||+|+
T Consensus 215 ~~~~~s~l~~vDLAGsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~ 293 (321)
T cd01374 215 GTVRVSTLNLIDLAGSERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTA 293 (321)
T ss_pred CcEEEEEEEEEECCCCCccccCC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEE
Confidence 45678999999999999999888 89999999999999999999999999865467999999999999999999999999
Q ss_pred eEeccCCCCCCHHHHHHHHHHHHHhccc
Q 003967 161 IICTISPALSHVEQTRNTLSFATSAKEV 188 (783)
Q Consensus 161 mIatVSPs~~~~eETLsTLrFAsRAk~I 188 (783)
|||||||...+++||++||+||+||++|
T Consensus 294 ~i~~vsp~~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 294 IICTISPASSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred EEEEeCCccccHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999986
No 15
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=2e-41 Score=366.30 Aligned_cols=187 Identities=45% Similarity=0.658 Sum_probs=175.2
Q ss_pred CCCCCCCC-CCceEEEcCCCCeEEcCcEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCceeEEEEEEEeeeccCCC
Q 003967 1 MDLLNCES-GSLRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLTIESSLRENSG 79 (783)
Q Consensus 1 ~DLL~p~~-~~L~IrEDp~~G~~VegLtev~V~S~eel~~LL~~G~~~R~v~~T~~N~~SSRSH~IftI~Ie~~~~~~~~ 79 (783)
||||++.. .+|.|++++.+|++|.||+++.|.|++++..+|..|.++|+++.|.+|..|||||+||+|+|++......+
T Consensus 146 ~DLL~~~~~~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~ 225 (333)
T cd01371 146 RDLLGKDQKKKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDG 225 (333)
T ss_pred eeCCCCCCCCceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCC
Confidence 69999876 58999999999999999999999999999999999999999999999999999999999999987665434
Q ss_pred cceeeeeeeeeecCCCCccccccCccchhhHHhHHhhHhHHHHHHHHHHhhcCCCCCcccCCCCcchhhcccccCCCCcc
Q 003967 80 CVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGNART 159 (783)
Q Consensus 80 ~~~s~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~~~k~~hIPYRDSKLTrLLqdSLGGNskT 159 (783)
......|+|+|||||||||..+++..|.+++|+..||+||.+|++||.+|+.+ +..|||||+||||+||+++|||||+|
T Consensus 226 ~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~-~~~~ipyR~SkLT~lL~~~l~g~s~t 304 (333)
T cd01371 226 ENHIRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDG-KSTHIPYRDSKLTRLLQDSLGGNSKT 304 (333)
T ss_pred CCcEEEEEEEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhC-CCCcCCCccCHHHHHHHHhcCCCceE
Confidence 44556899999999999999999999999999999999999999999999874 44699999999999999999999999
Q ss_pred ceEeccCCCCCCHHHHHHHHHHHHHhccc
Q 003967 160 AIICTISPALSHVEQTRNTLSFATSAKEV 188 (783)
Q Consensus 160 ~mIatVSPs~~~~eETLsTLrFAsRAk~I 188 (783)
+||+||+|...+++||++||+||+|||.|
T Consensus 305 ~~I~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 305 VMCANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred EEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999986
No 16
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=6.7e-41 Score=362.39 Aligned_cols=189 Identities=39% Similarity=0.576 Sum_probs=175.3
Q ss_pred CCCCCCC---CCCceEEEcCCCCeEEcCcEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCceeEEEEEEEeeeccC
Q 003967 1 MDLLNCE---SGSLRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLTIESSLREN 77 (783)
Q Consensus 1 ~DLL~p~---~~~L~IrEDp~~G~~VegLtev~V~S~eel~~LL~~G~~~R~v~~T~~N~~SSRSH~IftI~Ie~~~~~~ 77 (783)
||||++. ...+.|++|+.+|++|.|++++.|.|++++..+|..|.++|.++.|.+|..|||||+||+|+|.+.....
T Consensus 142 ~DLL~~~~~~~~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~ 221 (341)
T cd01372 142 RDLLSPSTSEKSPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNG 221 (341)
T ss_pred ecCCCCcccCCCCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCC
Confidence 7999986 4699999999999999999999999999999999999999999999999999999999999999976542
Q ss_pred C-------CcceeeeeeeeeecCCCCccccccCccchhhHHhHHhhHhHHHHHHHHHHhhcCCC-CCcccCCCCcchhhc
Q 003967 78 S-------GCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLTLTTVIRKLSGGKR-IGHIPYRDSKLTRIL 149 (783)
Q Consensus 78 ~-------~~~~s~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~~~k-~~hIPYRDSKLTrLL 149 (783)
. .......|+|+||||||||+..++++.|.+++|+..||+||++|++||.+|+.+++ ..|||||+||||+||
T Consensus 222 ~~~~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL 301 (341)
T cd01372 222 PIAPMSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLL 301 (341)
T ss_pred ccccccccCCCceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHH
Confidence 1 22345689999999999999999999999999999999999999999999987542 479999999999999
Q ss_pred ccccCCCCccceEeccCCCCCCHHHHHHHHHHHHHhcccc
Q 003967 150 QHSLGGNARTAIICTISPALSHVEQTRNTLSFATSAKEVT 189 (783)
Q Consensus 150 qdSLGGNskT~mIatVSPs~~~~eETLsTLrFAsRAk~Ik 189 (783)
+|+||||++|+||+||||...+++||++||+||++|++|+
T Consensus 302 ~~~Lgg~s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 302 QDSLGGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred HHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999999985
No 17
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=7.6e-41 Score=360.02 Aligned_cols=184 Identities=43% Similarity=0.610 Sum_probs=173.4
Q ss_pred CCCCCCCCCCceEEEcCCCCeEEcCcEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCceeEEEEEEEeeeccCCCc
Q 003967 1 MDLLNCESGSLRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLTIESSLRENSGC 80 (783)
Q Consensus 1 ~DLL~p~~~~L~IrEDp~~G~~VegLtev~V~S~eel~~LL~~G~~~R~v~~T~~N~~SSRSH~IftI~Ie~~~~~~~~~ 80 (783)
||||++....+.|++++.+|++|+|++++.|.|++++..+|..|.++|++++|.+|..|||||+||+|+|.+......
T Consensus 142 ~DLL~~~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~-- 219 (325)
T cd01369 142 RDLLDVSKDNLQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETG-- 219 (325)
T ss_pred hhcccCccCCceEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCCC--
Confidence 799999888999999999999999999999999999999999999999999999999999999999999998654322
Q ss_pred ceeeeeeeeeecCCCCccccccCccchhhHHhHHhhHhHHHHHHHHHHhhcCCCCCcccCCCCcchhhcccccCCCCccc
Q 003967 81 VKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGNARTA 160 (783)
Q Consensus 81 ~~s~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~~~k~~hIPYRDSKLTrLLqdSLGGNskT~ 160 (783)
....|+|+||||||||+..++++.|.+++|+..||+||++|++||.+|+.++ ..||||||||||+||+|+|||||+|+
T Consensus 220 -~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~-~~~vpyR~S~LT~lL~~~L~g~s~t~ 297 (325)
T cd01369 220 -SKKRGKLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGK-STHIPYRDSKLTRILQDSLGGNSRTT 297 (325)
T ss_pred -CEEEEEEEEEECCCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCC-CCcCCCccCHHHHHHHHhcCCCCeEE
Confidence 3467899999999999999999999999999999999999999999998754 37999999999999999999999999
Q ss_pred eEeccCCCCCCHHHHHHHHHHHHHhccc
Q 003967 161 IICTISPALSHVEQTRNTLSFATSAKEV 188 (783)
Q Consensus 161 mIatVSPs~~~~eETLsTLrFAsRAk~I 188 (783)
||+||||+..+++||++||+||+|||.|
T Consensus 298 ~I~~vsp~~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 298 LIICCSPSSYNESETLSTLRFGARAKTI 325 (325)
T ss_pred EEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999986
No 18
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=5.6e-41 Score=360.83 Aligned_cols=179 Identities=37% Similarity=0.593 Sum_probs=169.8
Q ss_pred CCCCCCCCCCceEEEcCCCCeEEcCcEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCceeEEEEEEEeeeccCCCc
Q 003967 1 MDLLNCESGSLRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLTIESSLRENSGC 80 (783)
Q Consensus 1 ~DLL~p~~~~L~IrEDp~~G~~VegLtev~V~S~eel~~LL~~G~~~R~v~~T~~N~~SSRSH~IftI~Ie~~~~~~~~~ 80 (783)
||||++....+.|++++.+|++|.|++++.|.+++++..+|..|.++|.+++|.+|..|||||+||+|+|.+....
T Consensus 141 ~DLL~~~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~---- 216 (319)
T cd01376 141 YDLLEPAKKELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASN---- 216 (319)
T ss_pred eEccCCCCCCceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECCC----
Confidence 6999988889999999999999999999999999999999999999999999999999999999999999886331
Q ss_pred ceeeeeeeeeecCCCCccccccCccchhhHHhHHhhHhHHHHHHHHHHhhcCCCCCcccCCCCcchhhcccccCCCCccc
Q 003967 81 VKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGNARTA 160 (783)
Q Consensus 81 ~~s~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~~~k~~hIPYRDSKLTrLLqdSLGGNskT~ 160 (783)
....|+|+||||||||+..+++..|.+++|+..||+||++|++||.+|+.+ ..|||||+||||+||+|+|||||+|+
T Consensus 217 -~~~~s~l~~VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~--~~~ipyr~S~LT~lL~~~L~g~s~t~ 293 (319)
T cd01376 217 -IQLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKG--LPRIPYRESKLTRLLQDSLGGGSRCI 293 (319)
T ss_pred -ceEEEEEEEEECCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcC--CCcCCCccCHHHHHHHHhcCCCccEE
Confidence 246799999999999999999999999999999999999999999999864 47999999999999999999999999
Q ss_pred eEeccCCCCCCHHHHHHHHHHHHHhc
Q 003967 161 IICTISPALSHVEQTRNTLSFATSAK 186 (783)
Q Consensus 161 mIatVSPs~~~~eETLsTLrFAsRAk 186 (783)
||+||||...+++||++||+||+|||
T Consensus 294 ~i~~vsp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 294 MVANIAPERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred EEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999986
No 19
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=8.4e-41 Score=360.05 Aligned_cols=177 Identities=41% Similarity=0.607 Sum_probs=166.2
Q ss_pred CCCCCCCCCCceEEEcCCCCeEEcCcEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCceeEEEEEEEeeeccCCCc
Q 003967 1 MDLLNCESGSLRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLTIESSLRENSGC 80 (783)
Q Consensus 1 ~DLL~p~~~~L~IrEDp~~G~~VegLtev~V~S~eel~~LL~~G~~~R~v~~T~~N~~SSRSH~IftI~Ie~~~~~~~~~ 80 (783)
||||++ ..+|.|++|+.+|++|+|++++.|.|++|+..+|..|.++|+++.|.+|..|||||+||+|+|.+...
T Consensus 145 ~DLL~~-~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~----- 218 (322)
T cd01367 145 FDLLND-RKRLSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL----- 218 (322)
T ss_pred hhhccC-ccceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC-----
Confidence 699997 57899999999999999999999999999999999999999999999999999999999999998643
Q ss_pred ceeeeeeeeeecCCCCccccccC-ccchhhHHhHHhhHhHHHHHHHHHHhhcCCCCCcccCCCCcchhhcccccCCCCcc
Q 003967 81 VKSFLASLNLVDLAGSERASQTN-ADGVRLKEGSHINRSLLTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGNART 159 (783)
Q Consensus 81 ~~s~~SkL~fVDLAGSER~~kt~-s~G~rlkEg~~INkSLlaLg~VI~aLs~~~k~~hIPYRDSKLTrLLqdSLGGNskT 159 (783)
....|+|+||||||||+....+ ..+.+++|+.+||+||++|++||.+|+.++ .||||||||||+||+|+|||||+|
T Consensus 219 -~~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~--~~iPyRdSkLT~lL~~~L~g~~~t 295 (322)
T cd01367 219 -NKLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNK--AHVPFRGSKLTQVLRDSFIGNSKT 295 (322)
T ss_pred -CeeEEEEEEeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCC--CcCCCccCHHHHHHHHhhCCCCeE
Confidence 3457899999999999998765 568899999999999999999999998743 799999999999999999999999
Q ss_pred ceEeccCCCCCCHHHHHHHHHHHHHhc
Q 003967 160 AIICTISPALSHVEQTRNTLSFATSAK 186 (783)
Q Consensus 160 ~mIatVSPs~~~~eETLsTLrFAsRAk 186 (783)
+|||||||+..+++||++||+||+|+|
T Consensus 296 ~~I~~vsp~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 296 VMIATISPSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred EEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 999999999999999999999999986
No 20
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=1.4e-40 Score=359.90 Aligned_cols=184 Identities=41% Similarity=0.540 Sum_probs=171.6
Q ss_pred CCCCCCCC------CCceEEEcCCCCeEEcCcEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCceeEEEEEEEeee
Q 003967 1 MDLLNCES------GSLRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLTIESSL 74 (783)
Q Consensus 1 ~DLL~p~~------~~L~IrEDp~~G~~VegLtev~V~S~eel~~LL~~G~~~R~v~~T~~N~~SSRSH~IftI~Ie~~~ 74 (783)
||||++.. ..|.|++|+.++++|+|++++.|.+++|+..+|..|..+|++++|.+|..|||||+||+|+|.+..
T Consensus 145 ~DLL~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~ 224 (334)
T cd01375 145 YDLLGDTPEALESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRS 224 (334)
T ss_pred ecCCCCCccccccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEe
Confidence 79999874 589999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ccCCCcceeeeeeeeeecCCCCccccccCccchhhHHhHHhhHhHHHHHHHHHHhhcCCCCCcccCCCCcchhhcccccC
Q 003967 75 RENSGCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLG 154 (783)
Q Consensus 75 ~~~~~~~~s~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~~~k~~hIPYRDSKLTrLLqdSLG 154 (783)
....+ .....|+|+|||||||||..++++.+..++|+.+||+||++|++||.+|+.++ ..||||||||||+||+|+||
T Consensus 225 ~~~~~-~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~-~~~ipyRdSkLT~lL~d~Lg 302 (334)
T cd01375 225 REAGS-EVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKA-RTHVPYRNSKLTHVLRDSLG 302 (334)
T ss_pred cCCCC-CceEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCC-CCCCCCcccHHHHHHHHhcC
Confidence 54332 34568999999999999999999999999999999999999999999998743 47999999999999999999
Q ss_pred CCCccceEeccCCCCCCHHHHHHHHHHHHHhc
Q 003967 155 GNARTAIICTISPALSHVEQTRNTLSFATSAK 186 (783)
Q Consensus 155 GNskT~mIatVSPs~~~~eETLsTLrFAsRAk 186 (783)
|||+|+|||||||+..+++||++||+||+|++
T Consensus 303 g~~~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 303 GNCKTVMLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred CCceEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999985
No 21
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.5e-42 Score=399.96 Aligned_cols=218 Identities=41% Similarity=0.558 Sum_probs=198.9
Q ss_pred CCCCCCCCC--CceEEEcCCCCeEEcCcEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCceeEEEEEEEeeeccCC
Q 003967 1 MDLLNCESG--SLRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLTIESSLRENS 78 (783)
Q Consensus 1 ~DLL~p~~~--~L~IrEDp~~G~~VegLtev~V~S~eel~~LL~~G~~~R~v~~T~~N~~SSRSH~IftI~Ie~~~~~~~ 78 (783)
+|||.|... ++++++ +.+++.+.||++++|.+..++...|..|...|++++|.||..|||||+||+|++++......
T Consensus 131 ~dl~~~~~~~~~i~~~e-~~g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~ 209 (913)
T KOG0244|consen 131 LDLLKPSRLKANIKLRE-PKGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSK 209 (913)
T ss_pred hhhcChhhhhhceeccc-cCCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhc
Confidence 588885443 788888 77889999999999999999999999999999999999999999999999999998644332
Q ss_pred CcceeeeeeeeeecCCCCccccccCccchhhHHhHHhhHhHHHHHHHHHHhhcCCCCCcccCCCCcchhhcccccCCCCc
Q 003967 79 GCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGNAR 158 (783)
Q Consensus 79 ~~~~s~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~~~k~~hIPYRDSKLTrLLqdSLGGNsk 158 (783)
...++++|+|||||||||.++++++|.|++||.+||.+|++||+||.||...++.+|||||||||||||||+||||+.
T Consensus 210 --~s~~~sKlhlVDLAGSER~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~ 287 (913)
T KOG0244|consen 210 --RSSFCSKLHLVDLAGSERVKKTKAEGDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSD 287 (913)
T ss_pred --cchhhhhhheeeccccccccccccchhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcc
Confidence 235789999999999999999999999999999999999999999999988777789999999999999999999999
Q ss_pred cceEeccCCCCCCHHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHhcCCC
Q 003967 159 TAIICTISPALSHVEQTRNTLSFATSAKEVTNNAQVNMVVSDKRLVKQLQKEVARLEAELRSPD 222 (783)
Q Consensus 159 T~mIatVSPs~~~~eETLsTLrFAsRAk~Ikn~p~vN~~~s~~~lIk~Lq~EIa~Lk~eL~~~~ 222 (783)
|+||+||||+..+++||++||+||.||++|+|.|.+|.. .....+..++.+|..|+.+|-...
T Consensus 288 tlmiaCiSpadsn~~EtlnTl~ya~Rak~iknk~vvN~d-~~~~~~~~lK~ql~~l~~ell~~~ 350 (913)
T KOG0244|consen 288 TLMIACISPADSNAQETLNTLRYADRAKQIKNKPVVNQD-PKSFEMLKLKAQLEPLQVELLSKA 350 (913)
T ss_pred eeeeeecChhhhhhhhHHHHHHHhhHHHHhccccccccc-HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999994 344568899999999999886553
No 22
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=6.5e-40 Score=353.14 Aligned_cols=186 Identities=39% Similarity=0.549 Sum_probs=175.0
Q ss_pred CCCCCCC---CCCceEEEcCCCCeEEcCcEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCceeEEEEEEEeeeccC
Q 003967 1 MDLLNCE---SGSLRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLTIESSLREN 77 (783)
Q Consensus 1 ~DLL~p~---~~~L~IrEDp~~G~~VegLtev~V~S~eel~~LL~~G~~~R~v~~T~~N~~SSRSH~IftI~Ie~~~~~~ 77 (783)
||||++. ..+|.|++++.+|++|.|++++.|.|++++..+|..|.++|.++.|.+|..|||||+||+|+|.+.....
T Consensus 141 ~DLL~~~~~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~ 220 (329)
T cd01366 141 RDLLATKPAPKKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQT 220 (329)
T ss_pred EECCCCCcCCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCCC
Confidence 6999986 5699999999999999999999999999999999999999999999999999999999999999865432
Q ss_pred CCcceeeeeeeeeecCCCCccccccCccchhhHHhHHhhHhHHHHHHHHHHhhcCCCCCcccCCCCcchhhcccccCCCC
Q 003967 78 SGCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGNA 157 (783)
Q Consensus 78 ~~~~~s~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~~~k~~hIPYRDSKLTrLLqdSLGGNs 157 (783)
.....|+|+||||||||+..+.++.|.+++|+..||+||++|++||.+|+.+ ..|||||+||||+||+++||||+
T Consensus 221 ---~~~~~s~l~~VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~--~~~ipyr~S~LT~lL~~~l~g~~ 295 (329)
T cd01366 221 ---GEQTRGKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSK--DSHVPYRNSKLTYLLQDSLGGNS 295 (329)
T ss_pred ---CcEEEEEEEEEECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcC--CCcCCCcccHhHHHHHHhcCCCc
Confidence 2456899999999999999999999999999999999999999999999874 57999999999999999999999
Q ss_pred ccceEeccCCCCCCHHHHHHHHHHHHHhcccccc
Q 003967 158 RTAIICTISPALSHVEQTRNTLSFATSAKEVTNN 191 (783)
Q Consensus 158 kT~mIatVSPs~~~~eETLsTLrFAsRAk~Ikn~ 191 (783)
+|+||+||||...+++||++||+||++|++|++.
T Consensus 296 ~t~~i~~vsp~~~~~~etl~tL~~a~~~~~i~~~ 329 (329)
T cd01366 296 KTLMFVNISPLESNLSETLCSLRFASRVRSVELG 329 (329)
T ss_pred eEEEEEEeCCchhhHHHHHHHHHHHHHhhcccCC
Confidence 9999999999999999999999999999999863
No 23
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=1.2e-39 Score=351.44 Aligned_cols=194 Identities=47% Similarity=0.672 Sum_probs=182.7
Q ss_pred CCCCCCCCCCceEEEcCCCCeEEcCcEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCceeEEEEEEEeeeccCCCc
Q 003967 1 MDLLNCESGSLRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLTIESSLRENSGC 80 (783)
Q Consensus 1 ~DLL~p~~~~L~IrEDp~~G~~VegLtev~V~S~eel~~LL~~G~~~R~v~~T~~N~~SSRSH~IftI~Ie~~~~~~~~~ 80 (783)
+|||++...+|.|++++.+|++|.|++++.|.|++++..+|..|..+|.+++|.+|..|||||+||+|+|.+..... ..
T Consensus 142 ~DLL~~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~-~~ 220 (335)
T smart00129 142 RDLLNPSPKKLEIREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNS-SS 220 (335)
T ss_pred EECcCCCCCCcEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCC-CC
Confidence 69999998999999999999999999999999999999999999999999999999999999999999999763332 22
Q ss_pred ceeeeeeeeeecCCCCccccccCccchhhHHhHHhhHhHHHHHHHHHHhhcCCCCCcccCCCCcchhhcccccCCCCccc
Q 003967 81 VKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGNARTA 160 (783)
Q Consensus 81 ~~s~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~~~k~~hIPYRDSKLTrLLqdSLGGNskT~ 160 (783)
.....|+|+||||||+|+....++.|.+++|+..||+||.+|++||.+|+++.+..|||||+|+||+||+++|||+++|+
T Consensus 221 ~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~ 300 (335)
T smart00129 221 GSGKASKLNLVDLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTL 300 (335)
T ss_pred CCEEEEEEEEEECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEE
Confidence 34578999999999999999999999999999999999999999999999866778999999999999999999999999
Q ss_pred eEeccCCCCCCHHHHHHHHHHHHHhcccccccccc
Q 003967 161 IICTISPALSHVEQTRNTLSFATSAKEVTNNAQVN 195 (783)
Q Consensus 161 mIatVSPs~~~~eETLsTLrFAsRAk~Ikn~p~vN 195 (783)
||+||+|...+++||++||+||+++++|+|+|++|
T Consensus 301 ~i~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 301 MIANISPSLSNLEETLSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred EEEEcCCCccchHHHHHHHHHHHHHhhcccCCCcC
Confidence 99999999999999999999999999999999875
No 24
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=1.8e-39 Score=349.34 Aligned_cols=188 Identities=42% Similarity=0.625 Sum_probs=172.9
Q ss_pred CCCCCCC----CCCceEEEcCCCC-eEEcCcEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCceeEEEEEEEeeec
Q 003967 1 MDLLNCE----SGSLRLLDDPEKG-TIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLTIESSLR 75 (783)
Q Consensus 1 ~DLL~p~----~~~L~IrEDp~~G-~~VegLtev~V~S~eel~~LL~~G~~~R~v~~T~~N~~SSRSH~IftI~Ie~~~~ 75 (783)
||||++. ..+|.|++|+..| ++|.|++++.|.+++++..+|..|.++|.++.|.+|..|||||+||+|+|.+...
T Consensus 141 ~DLL~~~~~~~~~~l~i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~ 220 (335)
T PF00225_consen 141 YDLLSPNNSKSRKPLKIREDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDR 220 (335)
T ss_dssp EETTSTTSSSTTSEBEEEEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEET
T ss_pred hhhcCccccccccccceeeccccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccc
Confidence 6999987 3479999999887 9999999999999999999999999999999999999999999999999999876
Q ss_pred cCCCcc-eeeeeeeeeecCCCCccccccCc-cchhhHHhHHhhHhHHHHHHHHHHhhcCCCCCcccCCCCcchhhccccc
Q 003967 76 ENSGCV-KSFLASLNLVDLAGSERASQTNA-DGVRLKEGSHINRSLLTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSL 153 (783)
Q Consensus 76 ~~~~~~-~s~~SkL~fVDLAGSER~~kt~s-~G~rlkEg~~INkSLlaLg~VI~aLs~~~k~~hIPYRDSKLTrLLqdSL 153 (783)
...... ....|+|+||||||+|+..+.++ .+.+++|+..||+||.+|++||.+|+.+....|||||+||||+||+|+|
T Consensus 221 ~~~~~~~~~~~s~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l 300 (335)
T PF00225_consen 221 DPSDDEESVKHSRLTFVDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSL 300 (335)
T ss_dssp TTTTEEEEEEEEEEEEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGT
T ss_pred cccccccceeecceeeeecccccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccc
Confidence 654432 24789999999999999998886 4888999999999999999999999986457899999999999999999
Q ss_pred CCCCccceEeccCCCCCCHHHHHHHHHHHHHhccc
Q 003967 154 GGNARTAIICTISPALSHVEQTRNTLSFATSAKEV 188 (783)
Q Consensus 154 GGNskT~mIatVSPs~~~~eETLsTLrFAsRAk~I 188 (783)
||||+|+||+||+|...+++||++||+||.+|++|
T Consensus 301 ~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 301 GGNSKTILIVCVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp SSSSEEEEEEEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred cccccceeEEEcCCccccHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999987
No 25
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.8e-38 Score=351.50 Aligned_cols=184 Identities=40% Similarity=0.566 Sum_probs=168.5
Q ss_pred CCCCCCCCCCceEEEcCCCCeEEcCcEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCceeEEEEEEEeeeccCCCc
Q 003967 1 MDLLNCESGSLRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLTIESSLRENSGC 80 (783)
Q Consensus 1 ~DLL~p~~~~L~IrEDp~~G~~VegLtev~V~S~eel~~LL~~G~~~R~v~~T~~N~~SSRSH~IftI~Ie~~~~~~~~~ 80 (783)
||||+. +..|+++||.+..+.|.||+|..|.+.++++.||..|++.|+.|.|..|..|||||+||+|.+....
T Consensus 361 fDLL~~-k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~------ 433 (676)
T KOG0246|consen 361 YDLLND-KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG------ 433 (676)
T ss_pred hhhhcc-ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCC------
Confidence 799995 7899999999999999999999999999999999999999999999999999999999999997641
Q ss_pred ceeeeeeeeeecCCCCccccccCc-cchhhHHhHHhhHhHHHHHHHHHHhhcCCCCCcccCCCCcchhhcccccCC-CCc
Q 003967 81 VKSFLASLNLVDLAGSERASQTNA-DGVRLKEGSHINRSLLTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGG-NAR 158 (783)
Q Consensus 81 ~~s~~SkL~fVDLAGSER~~kt~s-~G~rlkEg~~INkSLlaLg~VI~aLs~~~k~~hIPYRDSKLTrLLqdSLGG-Nsk 158 (783)
...+.+++.||||||+||...+.. +.+...||+-|||||+||..||+||. +...|+|||.||||.+|+|||-| |++
T Consensus 434 ~~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg--~nk~H~PFR~SKLTqVLRDSFIGenSr 511 (676)
T KOG0246|consen 434 EFKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALG--RNKSHLPFRGSKLTQVLRDSFIGENSR 511 (676)
T ss_pred cceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhc--CCCCCCCchhhhHHHHHHHhhcCCCCc
Confidence 134689999999999999877654 44566799999999999999999994 46689999999999999999988 999
Q ss_pred cceEeccCCCCCCHHHHHHHHHHHHHhcccccccc
Q 003967 159 TAIICTISPALSHVEQTRNTLSFATSAKEVTNNAQ 193 (783)
Q Consensus 159 T~mIatVSPs~~~~eETLsTLrFAsRAk~Ikn~p~ 193 (783)
|+||+||||.....+.||+||+||.|+|+......
T Consensus 512 TcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 512 TCMIATISPGISSCEHTLNTLRYADRVKELSVDGG 546 (676)
T ss_pred eEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCCCC
Confidence 99999999999999999999999999999866554
No 26
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=9.2e-38 Score=335.24 Aligned_cols=185 Identities=48% Similarity=0.645 Sum_probs=173.3
Q ss_pred CCCCCCC--CCCceEEEcCCCCeEEcCcEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCceeEEEEEEEeeeccCC
Q 003967 1 MDLLNCE--SGSLRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLTIESSLRENS 78 (783)
Q Consensus 1 ~DLL~p~--~~~L~IrEDp~~G~~VegLtev~V~S~eel~~LL~~G~~~R~v~~T~~N~~SSRSH~IftI~Ie~~~~~~~ 78 (783)
+|||++. ..+|.|++|+.+|++|.|++++.|.|++++..+|..|.++|.++.|.+|..|||||+||+|+|.+......
T Consensus 142 ~DLL~~~~~~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~ 221 (328)
T cd00106 142 YDLLSPEPPSKPLSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTND 221 (328)
T ss_pred EECCCCCCCCCCcEEEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCC
Confidence 6999997 88999999999999999999999999999999999999999999999999999999999999999765433
Q ss_pred CcceeeeeeeeeecCCCCccccccCccchhhHHhHHhhHhHHHHHHHHHHhhcCCCCCcccCCCCcchhhcccccCCCCc
Q 003967 79 GCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGNAR 158 (783)
Q Consensus 79 ~~~~s~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~~~k~~hIPYRDSKLTrLLqdSLGGNsk 158 (783)
.. ....|+|+||||||+|+..+.+..+.+++|+..||+||.+|++||.+|+.+.+..|||||+||||+||+|+|||+++
T Consensus 222 ~~-~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~ 300 (328)
T cd00106 222 GR-SIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSK 300 (328)
T ss_pred Cc-cEEEEEEEEEECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCe
Confidence 21 35689999999999999999999999999999999999999999999987554579999999999999999999999
Q ss_pred cceEeccCCCCCCHHHHHHHHHHHHHhc
Q 003967 159 TAIICTISPALSHVEQTRNTLSFATSAK 186 (783)
Q Consensus 159 T~mIatVSPs~~~~eETLsTLrFAsRAk 186 (783)
|+||+||+|...+++||++||+||+|||
T Consensus 301 t~~I~~vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 301 TLMIANISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred EEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999986
No 27
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=2.2e-38 Score=367.63 Aligned_cols=190 Identities=42% Similarity=0.548 Sum_probs=177.0
Q ss_pred CCCCCCC--CCCceEEEcCCCCeEEcCcEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCceeEEEEEEEeeeccCC
Q 003967 1 MDLLNCE--SGSLRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLTIESSLRENS 78 (783)
Q Consensus 1 ~DLL~p~--~~~L~IrEDp~~G~~VegLtev~V~S~eel~~LL~~G~~~R~v~~T~~N~~SSRSH~IftI~Ie~~~~~~~ 78 (783)
||||++. ...+.|+++++++++|.+++.+.|.+.+++..++..|..+|++++|.+|+.|||||+||+|+|......
T Consensus 456 ~DlL~~~~~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~-- 533 (670)
T KOG0239|consen 456 RDLLSDESYVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINEL-- 533 (670)
T ss_pred HHhccccccccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccC--
Confidence 6999876 469999999999999999999999999999999999999999999999999999999999999876322
Q ss_pred CcceeeeeeeeeecCCCCccccccCccchhhHHhHHhhHhHHHHHHHHHHhhcCCCCCcccCCCCcchhhcccccCCCCc
Q 003967 79 GCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGNAR 158 (783)
Q Consensus 79 ~~~~s~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~~~k~~hIPYRDSKLTrLLqdSLGGNsk 158 (783)
......+.|+|||||||||++++++.|.|++|+.+||+||++||+||.||+. +..||||||||||+|||++|||++|
T Consensus 534 -t~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~--k~~HiPyRNSKLT~lLq~sLGG~sK 610 (670)
T KOG0239|consen 534 -TGIRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALAS--KRSHIPYRNSKLTQLLQDSLGGDSK 610 (670)
T ss_pred -cccccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhh--cCCCCcccccchHHHhHhhhCCccc
Confidence 2244678999999999999999999999999999999999999999999976 6689999999999999999999999
Q ss_pred cceEeccCCCCCCHHHHHHHHHHHHHhcccccccccc
Q 003967 159 TAIICTISPALSHVEQTRNTLSFATSAKEVTNNAQVN 195 (783)
Q Consensus 159 T~mIatVSPs~~~~eETLsTLrFAsRAk~Ikn~p~vN 195 (783)
|+|+++|||...++.||+++|+||+|++.+...+-.-
T Consensus 611 TLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~~ 647 (670)
T KOG0239|consen 611 TLMFVNISPAAAALFETLCSLRFATRVRSVELGSARK 647 (670)
T ss_pred eeeEEEeCccHHHHhhhhhccchHHHhhceecccccc
Confidence 9999999999999999999999999999998776653
No 28
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.1e-36 Score=342.81 Aligned_cols=193 Identities=35% Similarity=0.484 Sum_probs=175.7
Q ss_pred CCCCCCCCC-----C-ceEEEcCCCCeEEcCcEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCceeEEEEEEEeee
Q 003967 1 MDLLNCESG-----S-LRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLTIESSL 74 (783)
Q Consensus 1 ~DLL~p~~~-----~-L~IrEDp~~G~~VegLtev~V~S~eel~~LL~~G~~~R~v~~T~~N~~SSRSH~IftI~Ie~~~ 74 (783)
||||.+... . +.+++|.++..||.|+++|.|.|.+|++.||..|.++|+++.|.+|..|||||+||+|.|.+..
T Consensus 241 YDLLe~~s~q~~~~~~~ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~ 320 (809)
T KOG0247|consen 241 YDLLEDASFQGKLQKLKLLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAP 320 (809)
T ss_pred HHhhccccccchhhhhhhhhhccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecc
Confidence 799976432 3 7789999999999999999999999999999999999999999999999999999999999876
Q ss_pred ccCCCcceeeeeeeeeecCCCCccccccCccchhhHHhHHhhHhHHHHHHHHHHhhcCC---CCCcccCCCCcchhhccc
Q 003967 75 RENSGCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLTLTTVIRKLSGGK---RIGHIPYRDSKLTRILQH 151 (783)
Q Consensus 75 ~~~~~~~~s~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~~~---k~~hIPYRDSKLTrLLqd 151 (783)
+.. +.....+|.|.|||||||||..++++.|.|++||++||.||++||+||.+|...+ ...+|||||||||++++.
T Consensus 321 ~~~-~s~~i~vSqlsLvDLAGSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~ 399 (809)
T KOG0247|consen 321 RSQ-DSNQITVSQLSLVDLAGSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKN 399 (809)
T ss_pred ccc-ccCceeEEeeeeeecccchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHH
Confidence 552 2334568999999999999999999999999999999999999999999998643 346999999999999999
Q ss_pred ccCCCCccceEeccCCCCCCHHHHHHHHHHHHHhccccccccc
Q 003967 152 SLGGNARTAIICTISPALSHVEQTRNTLSFATSAKEVTNNAQV 194 (783)
Q Consensus 152 SLGGNskT~mIatVSPs~~~~eETLsTLrFAsRAk~Ikn~p~v 194 (783)
+|.|+.+.+||+||+|...+|+|+++.|+||+-|..|.....+
T Consensus 400 ~f~G~gki~MIV~vnp~~e~YdEnl~vlkFaeiaq~v~v~~~~ 442 (809)
T KOG0247|consen 400 YFDGKGKIRMIVCVNPKAEDYDENLNVLKFAEIAQEVEVARPV 442 (809)
T ss_pred hcCCCCcEEEEEecCCchhhHHHHHHHHHHHHhcccccccCcc
Confidence 9999999999999999999999999999999999998765554
No 29
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=9.5e-36 Score=342.29 Aligned_cols=194 Identities=48% Similarity=0.668 Sum_probs=181.8
Q ss_pred CCCCCCCCCCceEEEcCCCCeEEcCcEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCceeEEEEEEEeeeccCCCc
Q 003967 1 MDLLNCESGSLRLLDDPEKGTIVEKLVEEVVRDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLTIESSLRENSGC 80 (783)
Q Consensus 1 ~DLL~p~~~~L~IrEDp~~G~~VegLtev~V~S~eel~~LL~~G~~~R~v~~T~~N~~SSRSH~IftI~Ie~~~~~~~~~ 80 (783)
+|||.+....+.+++|...|++|.|+++..|.++++++.+|..|..+|+++.|.+|..|||||+||++++.+.......
T Consensus 152 ~DLl~~~~~~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~~- 230 (568)
T COG5059 152 YDLLSPNEESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGT- 230 (568)
T ss_pred HhhccCccccccccccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCccc-
Confidence 6999987777899999999999999999999999999999999999999999999999999999999999997654432
Q ss_pred ceeeeeeeeeecCCCCccccccCccchhhHHhHHhhHhHHHHHHHHHHhhcCCCCCcccCCCCcchhhcccccCCCCccc
Q 003967 81 VKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGNARTA 160 (783)
Q Consensus 81 ~~s~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaLg~VI~aLs~~~k~~hIPYRDSKLTrLLqdSLGGNskT~ 160 (783)
...++++||||||||++..++..+.+++||..||+||++||+||.+|...++..|||||+|||||+||++|||+++|+
T Consensus 231 --~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~ 308 (568)
T COG5059 231 --SETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTR 308 (568)
T ss_pred --eecceEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEE
Confidence 223689999999999999999999999999999999999999999998755778999999999999999999999999
Q ss_pred eEeccCCCCCCHHHHHHHHHHHHHhcccccccccccc
Q 003967 161 IICTISPALSHVEQTRNTLSFATSAKEVTNNAQVNMV 197 (783)
Q Consensus 161 mIatVSPs~~~~eETLsTLrFAsRAk~Ikn~p~vN~~ 197 (783)
|||||+|...++++|.+||+||.+|+.|++.+.+|..
T Consensus 309 ~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~ 345 (568)
T COG5059 309 VICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSS 345 (568)
T ss_pred EEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCc
Confidence 9999999999999999999999999999999999963
No 30
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=99.97 E-value=2.3e-31 Score=265.80 Aligned_cols=134 Identities=45% Similarity=0.651 Sum_probs=123.3
Q ss_pred CCHHHHHHHHHHHHhhcccccccCCCCCCCceeEEEEEEEeeeccCCCcceeeeeeeeeecCCCCccccccCccchhhHH
Q 003967 32 RDSEHLRHLIGICEAQRQVGETALNDNSSRSHQIIRLTIESSLRENSGCVKSFLASLNLVDLAGSERASQTNADGVRLKE 111 (783)
Q Consensus 32 ~S~eel~~LL~~G~~~R~v~~T~~N~~SSRSH~IftI~Ie~~~~~~~~~~~s~~SkL~fVDLAGSER~~kt~s~G~rlkE 111 (783)
...+++..+|..|.++|+++.|.+|..|||||+||+|+|.+......+......++|+||||||||+..++++.+.+++|
T Consensus 53 ~~~~~~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e 132 (186)
T cd01363 53 RTVTDVIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTE 132 (186)
T ss_pred HHHHHHHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCCCccceeeeeEEEEEccccccccccCCchhhHHH
Confidence 34566999999999999999999999999999999999998776554444567899999999999999999999999999
Q ss_pred hHHhhHhHHHHHHHHHHhhcCCCCCcccCCCCcchhhcccccCCCCccceEeccCC
Q 003967 112 GSHINRSLLTLTTVIRKLSGGKRIGHIPYRDSKLTRILQHSLGGNARTAIICTISP 167 (783)
Q Consensus 112 g~~INkSLlaLg~VI~aLs~~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIatVSP 167 (783)
++.||+||++|++||.+|++ +..||||||||||+||||+|||||+|+||+||||
T Consensus 133 ~~~in~sl~~L~~~i~~l~~--~~~~vpyr~SkLT~lL~~~L~g~~~t~~i~~vsP 186 (186)
T cd01363 133 TANINKSLSTLGNVISALAE--RDSHVPYRESKLTRLLQDSLGGNSRTLMVACISP 186 (186)
T ss_pred HHHHhhHHHHHHHHHHHHhc--CCCCCCCcccHHHHHHHHhcCCCCeEEEEEEeCc
Confidence 99999999999999999987 4469999999999999999999999999999998
No 31
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=89.40 E-value=0.079 Score=62.73 Aligned_cols=80 Identities=39% Similarity=0.441 Sum_probs=65.6
Q ss_pred HHHhhcccccccCCCCCCCceeEEEEEEEeeeccCCCcceeeeeeeeeecCCCCccccccCccchhhHHhHHhhHhHHHH
Q 003967 43 ICEAQRQVGETALNDNSSRSHQIIRLTIESSLRENSGCVKSFLASLNLVDLAGSERASQTNADGVRLKEGSHINRSLLTL 122 (783)
Q Consensus 43 ~G~~~R~v~~T~~N~~SSRSH~IftI~Ie~~~~~~~~~~~s~~SkL~fVDLAGSER~~kt~s~G~rlkEg~~INkSLlaL 122 (783)
.....+..+.+.+|..++++|++|+........... ... ++.|||||+||. -..+-|.++++...+|++|..+
T Consensus 486 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~----~~~--~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~ 558 (568)
T COG5059 486 KASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSSTK----ELS--LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSL 558 (568)
T ss_pred hhccchhhcccchhhhhcccchhhhhcccchhhhhH----HHH--hhhhhccccccc-hhhhhHHHHHhhHhhhhccccc
Confidence 456678888999999999999999877644321111 111 799999999999 8889999999999999999999
Q ss_pred HHHHHHh
Q 003967 123 TTVIRKL 129 (783)
Q Consensus 123 g~VI~aL 129 (783)
+.+|.++
T Consensus 559 ~d~~~~~ 565 (568)
T COG5059 559 GDVIHAL 565 (568)
T ss_pred hhhhhhc
Confidence 9999876
No 32
>PRK10884 SH3 domain-containing protein; Provisional
Probab=76.51 E-value=7.7 Score=40.67 Aligned_cols=64 Identities=25% Similarity=0.287 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCCCc---hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003967 199 SDKRLVKQLQKEVARLEAELRSPDPSSS---SCFRSLLMEKDLKIQQLEREVKELKRQRDLAQPQFE 262 (783)
Q Consensus 199 s~~~lIk~Lq~EIa~Lk~eL~~~~~~~s---~~~~~~l~ek~~~i~qLe~ei~eLk~qrd~aq~~le 262 (783)
+....+..+++|++.|+++|........ ..+...+.+.+..+.+|++++.+|++++..++.+++
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~ 156 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVD 156 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556688899999999999987654321 122333334455566667777777776666666654
No 33
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=74.20 E-value=16 Score=36.67 Aligned_cols=63 Identities=22% Similarity=0.384 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCchHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhc
Q 003967 201 KRLVKQLQKEVARLEAELRSPDPSSSSCFRSLLMEKDLKIQQLEREVKELKRQRDLAQPQFERKAH 266 (783)
Q Consensus 201 ~~lIk~Lq~EIa~Lk~eL~~~~~~~s~~~~~~l~ek~~~i~qLe~ei~eLk~qrd~aq~~le~~~~ 266 (783)
....++|++|+.+|+.|++..+... ++. .-...++++.++++|++++++++...++.++..+.
T Consensus 39 ~~~~~~l~~Ei~~l~~E~~~iS~qD--eFA-kwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~ 101 (161)
T PF04420_consen 39 SKEQRQLRKEILQLKRELNAISAQD--EFA-KWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLS 101 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS-TTT--SHH-HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCcHH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457889999999999998875543 222 22245788999999999999999998888885443
No 34
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=65.67 E-value=4.5 Score=48.66 Aligned_cols=48 Identities=31% Similarity=0.554 Sum_probs=1.1
Q ss_pred hHHHHHHHHHHHhhhcccccchhhhhhhhhcCCCCCcce--eeehhHHHH
Q 003967 600 MFEEQRMQIVMLWHLCHVSIIHRTQFYLLFRGDPTDQIY--MEVELRRLT 647 (783)
Q Consensus 600 ~F~~~q~eIieLW~~C~vslvHRTyFfLLFkGd~~D~iY--mEVElRRLs 647 (783)
-.++.|.+|-+||+.|++|--.|..|.-.|-.+.++.+- +|.|+-||.
T Consensus 287 ~I~~~R~ei~elWd~~~~s~eer~~F~~~~~d~~~E~lL~~hE~Ei~~Lk 336 (619)
T PF03999_consen 287 FIEKKRQEIEELWDKCHYSEEERQAFTPFYIDSYTEELLELHEEEIERLK 336 (619)
T ss_dssp ------------------------------------------------HH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 357789999999999999999999988888766666554 888988764
No 35
>PF14282 FlxA: FlxA-like protein
Probab=63.45 E-value=30 Score=32.54 Aligned_cols=62 Identities=24% Similarity=0.313 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCchHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 003967 200 DKRLVKQLQKEVARLEAELRSPDPSSSSCFRSLLMEKDLKIQQLEREVKELKRQRDLAQPQFERKA 265 (783)
Q Consensus 200 ~~~lIk~Lq~EIa~Lk~eL~~~~~~~s~~~~~~l~ek~~~i~qLe~ei~eLk~qrd~aq~~le~~~ 265 (783)
....|..|+++|..|..+|......... -..++..+++.|..+|..|+.|+..++.+.....
T Consensus 17 ~~~~I~~L~~Qi~~Lq~ql~~l~~~~~~----~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 17 SDSQIEQLQKQIKQLQEQLQELSQDSDL----DAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999765542110 1235677888888888888888887777665433
No 36
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=53.57 E-value=76 Score=28.28 Aligned_cols=61 Identities=23% Similarity=0.304 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHH-------hcCCCCCCchHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 003967 201 KRLVKQLQKEVARLEAE-------LRSPDPSSSSCFRSLLMEKDLKIQQLEREVKELKRQRDLAQPQF 261 (783)
Q Consensus 201 ~~lIk~Lq~EIa~Lk~e-------L~~~~~~~s~~~~~~l~ek~~~i~qLe~ei~eLk~qrd~aq~~l 261 (783)
...|..|++|+-.|+-+ |....+.....+-....+....+..|.+++.++++.+..+...+
T Consensus 6 e~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~ 73 (75)
T PF07989_consen 6 EEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKAI 73 (75)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677788777666544 44333333223333333445566667777777777766665544
No 37
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=40.04 E-value=50 Score=38.81 Aligned_cols=86 Identities=23% Similarity=0.173 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHhcCCCCCCchHHhhhhHHHHHHHHHHHHHHHHH
Q 003967 171 HVEQTRNTLSFATSAKEVTNNAQVNMVVSDKRLVKQLQKEVARLEAELRSPDPSSSSCFRSLLMEKDLKIQQLEREVKEL 250 (783)
Q Consensus 171 ~~eETLsTLrFAsRAk~Ikn~p~vN~~~s~~~lIk~Lq~EIa~Lk~eL~~~~~~~s~~~~~~l~ek~~~i~qLe~ei~eL 250 (783)
-..+|+.||--. .|+++... ......-+.|++|+++|+......+..-...+.+.-.+...+.++|+.++.++
T Consensus 56 TP~DTlrTlva~--~k~~r~~~-----~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~ 128 (472)
T TIGR03752 56 TPADTLRTLVAE--VKELRKRL-----AKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQL 128 (472)
T ss_pred CccchHHHHHHH--HHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 457888887432 22222110 01112234566777777665544433222333333445555666777777777
Q ss_pred HHHHHHHhHHHHH
Q 003967 251 KRQRDLAQPQFER 263 (783)
Q Consensus 251 k~qrd~aq~~le~ 263 (783)
+.+++.++.+|+.
T Consensus 129 ~~~l~~l~~~l~~ 141 (472)
T TIGR03752 129 QGLIDQLQRRLAG 141 (472)
T ss_pred HHHHHHHHHHHhh
Confidence 7777777777753
No 38
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=38.15 E-value=1.5e+02 Score=26.29 Aligned_cols=50 Identities=22% Similarity=0.239 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCchHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhc
Q 003967 202 RLVKQLQKEVARLEAELRSPDPSSSSCFRSLLMEKDLKIQQLEREVKELKRQRDLAQPQFERKAH 266 (783)
Q Consensus 202 ~lIk~Lq~EIa~Lk~eL~~~~~~~s~~~~~~l~ek~~~i~qLe~ei~eLk~qrd~aq~~le~~~~ 266 (783)
..|..|+.||..|+.+-. ........|..++..|+.++...+.++...++
T Consensus 18 eti~~Lq~e~eeLke~n~---------------~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~ 67 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNN---------------ELKEENEELKEENEQLKQERNAWQERLRSLLG 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777777776542 22356677888999999999888888875443
No 39
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=32.59 E-value=1.3e+02 Score=30.21 Aligned_cols=18 Identities=56% Similarity=0.650 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 003967 204 VKQLQKEVARLEAELRSP 221 (783)
Q Consensus 204 Ik~Lq~EIa~Lk~eL~~~ 221 (783)
+..++.++..|+.+|...
T Consensus 88 l~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 88 LAELKKEVKSLEAELASL 105 (169)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555555443
No 40
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=30.43 E-value=1.5e+02 Score=29.37 Aligned_cols=66 Identities=20% Similarity=0.323 Sum_probs=44.8
Q ss_pred ehhHHHHHHHHHHhhhCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHhhcCC
Q 003967 641 VELRRLTWLEQHFAELGNASPALLGDEPAGSVASSVKALKQEREYLAKRVSSKLTAEERELLYMKWDI 708 (783)
Q Consensus 641 VElRRLs~lk~~~~~~g~~~~~~~~~~~~~s~~ss~k~l~rEr~~l~k~m~~rl~~~ere~ly~kwgi 708 (783)
.|||||+-||+.|.. .+..|...+.. -.+-....+.|-+..|-..+.++.-+...+=|-.+.|+-+
T Consensus 52 sEL~~Ls~LK~~y~~-~~~~~~~~~~~-l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L 117 (131)
T PF04859_consen 52 SELRRLSELKRRYRK-KQSDPSPQVAR-LAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKL 117 (131)
T ss_pred HHHHHHHHHHHHHHc-CCCCCCccccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 399999999999986 33332211111 1222355667888888889999888888887777776643
No 41
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=28.91 E-value=2.7e+02 Score=24.09 Aligned_cols=32 Identities=28% Similarity=0.478 Sum_probs=25.4
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 003967 228 CFRSLLMEKDLKIQQLEREVKELKRQRDLAQP 259 (783)
Q Consensus 228 ~~~~~l~ek~~~i~qLe~ei~eLk~qrd~aq~ 259 (783)
.+...|.+.+.++..|+.+|..|+.+.+.+++
T Consensus 29 ~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 29 AFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44667788888888899999999998887765
No 42
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.65 E-value=4.3e+02 Score=23.71 Aligned_cols=59 Identities=22% Similarity=0.215 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCchHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccC
Q 003967 202 RLVKQLQKEVARLEAELRSPDPSSSSCFRSLLMEKDLKIQQLEREVKELKRQRDLAQPQFERKAHKE 268 (783)
Q Consensus 202 ~lIk~Lq~EIa~Lk~eL~~~~~~~s~~~~~~l~ek~~~i~qLe~ei~eLk~qrd~aq~~le~~~~~~ 268 (783)
..|.-||-||..|+.+-... .....+....+..|+++.++|+.+-..-|.++...++++
T Consensus 18 dTI~LLQmEieELKEknn~l--------~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkm 76 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSL--------SQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGKM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34667888888888765432 222334455667788888888888887787777655554
No 43
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.63 E-value=91 Score=34.20 Aligned_cols=60 Identities=23% Similarity=0.271 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCchHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003967 202 RLVKQLQKEVARLEAELRSPDPSSSSCFRSLLMEKDLKIQQLEREVKELKRQRDLAQPQFE 262 (783)
Q Consensus 202 ~lIk~Lq~EIa~Lk~eL~~~~~~~s~~~~~~l~ek~~~i~qLe~ei~eLk~qrd~aq~~le 262 (783)
.-+.+++++...++.++......- ..+.....+.+.++.+.+.++++|+.+++.+..++.
T Consensus 38 s~l~~~~~~~~~~q~ei~~L~~qi-~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 38 SKLSELQKEKKNIQNEIESLDNQI-EEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443322111 122334445555666666666666666655555443
No 44
>PRK11637 AmiB activator; Provisional
Probab=26.94 E-value=2.6e+02 Score=32.14 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Q 003967 238 LKIQQLEREVKELKRQRDLAQPQFE 262 (783)
Q Consensus 238 ~~i~qLe~ei~eLk~qrd~aq~~le 262 (783)
.+|.+++.++.+++.+++..+..+.
T Consensus 103 ~ei~~l~~eI~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 103 KQIDELNASIAKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444443
No 45
>TIGR01961 NuoC_fam NADH (or F420H2) dehydrogenase, subunit C. This model describes the C subunit of the NADH dehydrogenase complex I in bacteria, as well as many instances of the corresponding mitochondrial subunit (NADH dehydrogenase subunit 9) and of the F420H2 dehydrogenase in Methanosarcina. Complex I contains subunits designated A-N. This C subunit often occurs as a fusion protein with the D subunit. This model excludes the NAD(P)H and plastoquinone-dependent form of chloroplasts and
Probab=26.29 E-value=33 Score=32.51 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=23.8
Q ss_pred HHHHHHHHhhcccCCcchhhhhhcccccCCCCCCCCC
Q 003967 736 SAEIVAQLVGFCESGEHASKEMFELNFANPSDKKTWM 772 (783)
Q Consensus 736 SA~~Vaklvgf~e~~~~~~kemfgl~f~~~~~~~~~~ 772 (783)
|-+-+-.-..+.| ....||||+.|.=.++.|+|+
T Consensus 70 Sis~i~p~A~~~E---REi~DmfGi~f~Ghpd~rr~l 103 (121)
T TIGR01961 70 SLTSVFPTANWYE---RETYDMYGIVFDGHPDLRRIL 103 (121)
T ss_pred chHHhhhcccHHH---HHHHhhcCcEeCCCCCCcccc
Confidence 3333334444445 779999999999888878883
No 46
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=25.88 E-value=1.5e+02 Score=36.73 Aligned_cols=75 Identities=25% Similarity=0.376 Sum_probs=0.0
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHhcCCCCCCch-------------HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh---
Q 003967 195 NMVVSDKRLVKQLQKEVARLEAELRSPDPSSSS-------------CFRSLLMEKDLKIQQLEREVKELKRQRDLAQ--- 258 (783)
Q Consensus 195 N~~~s~~~lIk~Lq~EIa~Lk~eL~~~~~~~s~-------------~~~~~l~ek~~~i~qLe~ei~eLk~qrd~aq--- 258 (783)
+........+..|..+|++|+.+|...+..... .++..|.....+.++|+..+..|.+++..=.
T Consensus 411 ~~~~~~~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l 490 (697)
T PF09726_consen 411 NAQNSEPDAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSL 490 (697)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhccCC
Q 003967 259 PQFERKAHKEP 269 (783)
Q Consensus 259 ~~le~~~~~~~ 269 (783)
+++|+++.+++
T Consensus 491 ~~LEkrL~eE~ 501 (697)
T PF09726_consen 491 QQLEKRLAEER 501 (697)
T ss_pred HHHHHHHHHHH
No 47
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=25.05 E-value=1.6e+02 Score=34.86 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCchHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003967 204 VKQLQKEVARLEAELRSPDPSSSSCFRSLLMEKDLKIQQLEREVKELKRQRD 255 (783)
Q Consensus 204 Ik~Lq~EIa~Lk~eL~~~~~~~s~~~~~~l~ek~~~i~qLe~ei~eLk~qrd 255 (783)
..+|+++++.|+.++... .....+.+.+|++++.+++.|+.|.+
T Consensus 78 asELEKqLaaLrqElq~~--------saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 78 AAQMQKQYEEIRRELDVL--------NKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHH--------hhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 455666666665554311 12233445566666666666666654
No 48
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=24.80 E-value=2.1e+02 Score=33.42 Aligned_cols=66 Identities=12% Similarity=0.232 Sum_probs=45.9
Q ss_pred HHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHhcCCCCCCchHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 003967 177 NTLSFATSAKEVTNNAQVNMVVSDKRLVKQLQKEVARLEAELRSPDPSSSSCFRSLLMEKDLKIQQLEREVKELKRQR 254 (783)
Q Consensus 177 sTLrFAsRAk~Ikn~p~vN~~~s~~~lIk~Lq~EIa~Lk~eL~~~~~~~s~~~~~~l~ek~~~i~qLe~ei~eLk~qr 254 (783)
-.|+|-++.+-+++.|+.+. .+.+.-|.+|+..|+.|+.--... . .+...+|.+|++.+.+++++.
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~-l~fe~pi~ele~ki~el~~~~~~~----~-------~~~~~ei~~l~~~~~~~~~~i 121 (431)
T PLN03230 56 GALKILNRFKPLKNKPKPVT-LPFEKPIVDLENRIDEVRELANKT----G-------VDFSAQIAELEERYDQVRREL 121 (431)
T ss_pred cHHHHHHhcCCCCCCCCCCc-cchhhHHHHHHHHHHHHHhhhhcc----c-------ccHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999775 466777889999999887532211 1 123456777777777666544
No 49
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=24.60 E-value=3.2e+02 Score=29.33 Aligned_cols=57 Identities=21% Similarity=0.278 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCchHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 003967 201 KRLVKQLQKEVARLEAELRSPDPSSSSCFRSLLMEKDLKIQQLEREVKELKRQRDLAQPQFERKA 265 (783)
Q Consensus 201 ~~lIk~Lq~EIa~Lk~eL~~~~~~~s~~~~~~l~ek~~~i~qLe~ei~eLk~qrd~aq~~le~~~ 265 (783)
...|.+|++|+..|..|-. .+...|......|..||..|++++.+++..+..+.+..
T Consensus 31 e~~L~e~~kE~~~L~~Er~--------~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~ 87 (230)
T PF10146_consen 31 EKCLEEYRKEMEELLQERM--------AHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLY 87 (230)
T ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888888888876653 23445666667777788888887777777666655433
No 50
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.80 E-value=1.4e+02 Score=32.55 Aligned_cols=36 Identities=36% Similarity=0.589 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCchHHhhhhHHHHHHHHHHHH
Q 003967 202 RLVKQLQKEVARLEAELRSPDPSSSSCFRSLLMEKDLKIQQLER 245 (783)
Q Consensus 202 ~lIk~Lq~EIa~Lk~eL~~~~~~~s~~~~~~l~ek~~~i~qLe~ 245 (783)
..|.+|++||++|+..|...+ .++.+++.+|-.|.-
T Consensus 225 V~i~~lkeeia~Lkk~L~qkd--------q~ileKdkqisnLKa 260 (305)
T KOG3990|consen 225 VKIQKLKEEIARLKKLLHQKD--------QLILEKDKQISNLKA 260 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhhH--------HHHHhhhhhhhccCc
Confidence 357899999999999886543 345566666655443
No 51
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=23.68 E-value=3.2e+02 Score=24.96 Aligned_cols=30 Identities=27% Similarity=0.084 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003967 233 LMEKDLKIQQLEREVKELKRQRDLAQPQFE 262 (783)
Q Consensus 233 l~ek~~~i~qLe~ei~eLk~qrd~aq~~le 262 (783)
..+.=.+|..+|.+|..|+++...++.++-
T Consensus 56 ~keLL~EIA~lE~eV~~LE~~v~~L~~~l~ 85 (88)
T PF14389_consen 56 AKELLEEIALLEAEVAKLEQKVLSLYRQLF 85 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556778888888888888888776653
No 52
>PF14383 VARLMGL: DUF761-associated sequence motif
Probab=22.90 E-value=37 Score=26.13 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=15.8
Q ss_pred CcchhhHHHHHHHHHHHhhcc
Q 003967 727 PLNMQNVKESAEIVAQLVGFC 747 (783)
Q Consensus 727 ~~d~~hv~eSA~~Vaklvgf~ 747 (783)
+.+-.+-+.+..+||+|+|+-
T Consensus 5 ~~~~~~~~r~P~vvarLMGld 25 (34)
T PF14383_consen 5 TDDESPGTRAPGVVARLMGLD 25 (34)
T ss_pred cccccccccChhHHHHHhccc
Confidence 344556677889999999983
No 53
>PRK04406 hypothetical protein; Provisional
Probab=22.00 E-value=5.7e+02 Score=22.81 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCchHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 003967 204 VKQLQKEVARLEAELRSPDPSSSSCFRSLLMEKDLKIQQLEREVKELKRQRDLAQPQF 261 (783)
Q Consensus 204 Ik~Lq~EIa~Lk~eL~~~~~~~s~~~~~~l~ek~~~i~qLe~ei~eLk~qrd~aq~~l 261 (783)
+..+...|.+|+..+.. ....+.+.+..+.+..++|..|++++..+..++
T Consensus 6 ~~~le~Ri~~LE~~lAf--------QE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 6 IEQLEERINDLECQLAF--------QEQTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777766632 122333444444455555555555555554444
No 54
>PRK11637 AmiB activator; Provisional
Probab=21.69 E-value=3.9e+02 Score=30.76 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003967 233 LMEKDLKIQQLEREVKELKRQRDLAQPQFE 262 (783)
Q Consensus 233 l~ek~~~i~qLe~ei~eLk~qrd~aq~~le 262 (783)
+.+.+.+|..++.++..++.+++.++.+++
T Consensus 91 i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 91 LRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666666666666655
No 55
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=20.86 E-value=3e+02 Score=27.23 Aligned_cols=62 Identities=23% Similarity=0.267 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCchHHhh------h-hHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003967 201 KRLVKQLQKEVARLEAELRSPDPSSSSCFRS------L-LMEKDLKIQQLEREVKELKRQRDLAQPQFE 262 (783)
Q Consensus 201 ~~lIk~Lq~EIa~Lk~eL~~~~~~~s~~~~~------~-l~ek~~~i~qLe~ei~eLk~qrd~aq~~le 262 (783)
..+..+|+++|..|+..+......+...+.+ + ......-+.+|+++..-|..|+....-+++
T Consensus 14 ~E~N~QLekqi~~l~~kiek~r~n~~drl~siR~ye~Ms~~~l~~llkqLEkeK~~Le~qlk~~e~rLe 82 (129)
T PF15372_consen 14 LELNDQLEKQIIILREKIEKIRGNPSDRLSSIRRYEQMSVESLNQLLKQLEKEKRSLENQLKDYEWRLE 82 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccccHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467789999999999997665543322211 1 122334556677777777777666666665
No 56
>PRK11546 zraP zinc resistance protein; Provisional
Probab=20.78 E-value=1.3e+02 Score=30.27 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003967 237 DLKIQQLEREVKELKRQRDLAQPQFER 263 (783)
Q Consensus 237 ~~~i~qLe~ei~eLk~qrd~aq~~le~ 263 (783)
..+|.++.+||.+|+.++...+-.++-
T Consensus 88 ~~kI~aL~kEI~~Lr~kL~e~r~~~~~ 114 (143)
T PRK11546 88 SSKINAVAKEMENLRQSLDELRVKRDI 114 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456889999999999988877776663
No 57
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=20.68 E-value=2.8e+02 Score=28.30 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003967 237 DLKIQQLEREVKELKRQRDLAQPQFE 262 (783)
Q Consensus 237 ~~~i~qLe~ei~eLk~qrd~aq~~le 262 (783)
+.++++++++++..+.+.+.++.|.+
T Consensus 160 ~~ei~~lk~el~~~~~~~~~LkkQ~~ 185 (192)
T PF05529_consen 160 SEEIEKLKKELEKKEKEIEALKKQSE 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555554444444444443
No 58
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=20.65 E-value=1.8e+02 Score=35.47 Aligned_cols=29 Identities=24% Similarity=0.463 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003967 234 MEKDLKIQQLEREVKELKRQRDLAQPQFE 262 (783)
Q Consensus 234 ~ek~~~i~qLe~ei~eLk~qrd~aq~~le 262 (783)
..++..|..|++++.+-+...+.+...++
T Consensus 477 ~~~~~~I~~L~~~L~e~~~~ve~L~~~l~ 505 (652)
T COG2433 477 RARDRRIERLEKELEEKKKRVEELERKLA 505 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666665555
No 59
>PRK02119 hypothetical protein; Provisional
Probab=20.36 E-value=6.1e+02 Score=22.47 Aligned_cols=51 Identities=16% Similarity=0.232 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCchHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003967 204 VKQLQKEVARLEAELRSPDPSSSSCFRSLLMEKDLKIQQLEREVKELKRQRDLAQPQFE 262 (783)
Q Consensus 204 Ik~Lq~EIa~Lk~eL~~~~~~~s~~~~~~l~ek~~~i~qLe~ei~eLk~qrd~aq~~le 262 (783)
+..+...|.+|+..+.. ....+.+.+..+.+..++|..|++++..+..++.
T Consensus 4 ~~~~e~Ri~~LE~rla~--------QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~ 54 (73)
T PRK02119 4 QQNLENRIAELEMKIAF--------QENLLEELNQALIEQQFVIDKMQVQLRYMANKLK 54 (73)
T ss_pred hHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777666532 1223334444555555555555555555544443
Done!