Your job contains 1 sequence.
>003969
MASFPTETLNLPPPINGQDSTSHNEPLQNADDEQIQPSIPQSTDDVTTTAAEKRKREDVA
TEGPQSESAEPSPSPSLHPLHKTSLCSYFRKVGTCCHGSTCRYAHGEEELRIRPDNTWDP
TSERAKKARKLEDGDKCEAKEDAVEEVMMTEAVVDGDGDGDQDVELSKCLVHLPRKWHSD
NLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR
SFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLKVKSA
RDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCK
LEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACK
YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML
IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR
LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG
PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED
VMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSN
CPEGSGKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRLL
HIM
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 003969
(783 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2056553 - symbol:AT2G28450 species:3702 "Arabi... 1490 3.5e-202 2
ZFIN|ZDB-GENE-030131-6876 - symbol:trmt2a "trm2 tRNA meth... 305 9.1e-54 4
DICTYBASE|DDB_G0293244 - symbol:DDB_G0293244 "tRNA (uraci... 284 3.4e-53 4
UNIPROTKB|F1P0L5 - symbol:TRMT2A "Uncharacterized protein... 283 1.1e-52 4
UNIPROTKB|F1PQ26 - symbol:TRMT2A "Uncharacterized protein... 282 8.1e-48 4
UNIPROTKB|Q8IZ69 - symbol:TRMT2A "tRNA (uracil-5-)-methyl... 279 1.4e-47 4
UNIPROTKB|F1RHM9 - symbol:TRMT2A "Uncharacterized protein... 266 3.2e-45 4
UNIPROTKB|F1M569 - symbol:Trmt2a "Protein Trmt2a" species... 260 9.4e-45 4
RGD|1310418 - symbol:Trmt2a "tRNA methyltransferase 2 hom... 260 9.5e-45 4
UNIPROTKB|D4A993 - symbol:Trmt2a "Protein Trmt2a" species... 260 1.1e-44 4
UNIPROTKB|F2Z2W7 - symbol:TRMT2A "tRNA (uracil-5-)-methyl... 244 3.0e-43 5
UNIPROTKB|Q96GJ1 - symbol:TRMT2B "tRNA (uracil(54)-C(5))-... 245 1.8e-39 3
UNIPROTKB|E1BMX2 - symbol:TRMT2A "Uncharacterized protein... 268 2.1e-38 5
FB|FBgn0036838 - symbol:CG3808 species:7227 "Drosophila m... 239 3.4e-37 3
UNIPROTKB|F1S1L6 - symbol:LOC100517798 "Uncharacterized p... 257 4.1e-37 3
MGI|MGI:2442530 - symbol:Trmt2b "TRM2 tRNA methyltransfer... 252 2.0e-36 3
MGI|MGI:96270 - symbol:Trmt2a "TRM2 tRNA methyltransferas... 243 2.1e-36 3
UNIPROTKB|E1BRR1 - symbol:LOC100858909 "Uncharacterized p... 275 6.6e-35 3
WB|WBGene00019241 - symbol:H24K24.4 species:6239 "Caenorh... 225 1.9e-34 5
ZFIN|ZDB-GENE-050809-101 - symbol:trmt2b "TRM2 tRNA methy... 227 1.1e-31 3
UNIPROTKB|Q8U1N4 - symbol:PF1172 "tRNA (uracil(54)-C(5))-... 130 3.7e-16 5
TIGR_CMR|CHY_1112 - symbol:CHY_1112 "23S rRNA (uracil-5-)... 184 6.7e-16 4
TAIR|locus:2094776 - symbol:AT3G21300 species:3702 "Arabi... 204 3.5e-15 4
GENEDB_PFALCIPARUM|PF11_0348 - symbol:PF11_0348 "hypothet... 160 1.4e-14 5
UNIPROTKB|Q8II27 - symbol:PF11_0348 "RNA (Uracil-5-)methy... 160 1.4e-14 5
TIGR_CMR|GSU_1452 - symbol:GSU_1452 "RNA methyltransferas... 178 2.3e-12 2
UNIPROTKB|O58864 - symbol:PH1137 "tRNA (uracil(54)-C(5))-... 110 2.7e-12 4
UNIPROTKB|Q9UZR7 - symbol:PYRAB10780 "tRNA (uracil(54)-C(... 112 3.2e-12 4
TIGR_CMR|BA_0333 - symbol:BA_0333 "RNA methyltransferase,... 173 5.4e-12 4
UNIPROTKB|O31503 - symbol:rlmCD "23S rRNA (uracil-C(5))-m... 192 7.6e-12 3
UNIPROTKB|O58994 - symbol:PH1259 "23S rRNA (uracil(747)-C... 141 2.2e-11 4
UNIPROTKB|Q9UZK1 - symbol:PYRAB11450 "23S rRNA (uracil(74... 131 1.3e-09 3
TIGR_CMR|BA_0426 - symbol:BA_0426 "RNA methyltransferase,... 157 4.0e-09 3
UNIPROTKB|Q8U2K7 - symbol:PF0827 "23S rRNA (uracil(747)-C... 117 2.2e-08 3
TIGR_CMR|DET_1065 - symbol:DET_1065 "RNA methyltransferas... 153 3.0e-08 3
UNIPROTKB|P75817 - symbol:rlmC "23S rRNA m5U747 methyltra... 118 1.1e-06 3
UNIPROTKB|P55135 - symbol:rlmD "23S rRNA m5U1939 methyltr... 150 1.7e-06 2
TIGR_CMR|SO_0980 - symbol:SO_0980 "RNA methyltransferase,... 146 3.0e-06 2
UNIPROTKB|Q9KL20 - symbol:rlmC "23S rRNA (uracil(747)-C(5... 142 3.6e-06 2
TIGR_CMR|VC_A0929 - symbol:VC_A0929 "TrmA family RNA meth... 142 3.6e-06 2
SGD|S000001764 - symbol:TRM2 "tRNA methyltransferase" spe... 139 8.1e-06 4
UNIPROTKB|Q9KPC1 - symbol:rlmD "23S rRNA (uracil(1939)-C(... 134 1.5e-05 2
TIGR_CMR|VC_2452 - symbol:VC_2452 "23S rRNA (uracil-5-)-... 134 1.5e-05 2
CGD|CAL0004099 - symbol:TRM2 species:5476 "Candida albica... 143 1.7e-05 2
TIGR_CMR|SO_3456 - symbol:SO_3456 "RNA methyltransferase,... 120 0.00020 2
POMBASE|SPAC4G8.07c - symbol:SPAC4G8.07c "tRNA (m5U54) me... 116 0.00032 4
TIGR_CMR|SO_0206 - symbol:SO_0206 "tRNA (uracil-5-)-methy... 104 0.00090 2
>TAIR|locus:2056553 [details] [associations]
symbol:AT2G28450 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0008173 "RNA methyltransferase activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000741
"karyogamy" evidence=RCA] [GO:0006606 "protein import into nucleus"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] InterPro:IPR000571 InterPro:IPR010280
InterPro:IPR012677 Pfam:PF00642 Pfam:PF05958 PROSITE:PS50103
SMART:SM00356 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0006396 InterPro:IPR025714 Pfam:PF13847 EMBL:AC006283
eggNOG:COG2265 GO:GO:0008173 EMBL:AY128289 EMBL:BT002293
IPI:IPI00526347 PIR:A84685 RefSeq:NP_180412.2 UniGene:At.44990
UniGene:At.66390 ProteinModelPortal:Q8L7S3 SMR:Q8L7S3 IntAct:Q8L7S3
PaxDb:Q8L7S3 PRIDE:Q8L7S3 EnsemblPlants:AT2G28450.1 GeneID:817393
KEGG:ath:AT2G28450 TAIR:At2g28450 HOGENOM:HOG000030531
InParanoid:Q8L7S3 KO:K15332 OMA:AHRVGMV PhylomeDB:Q8L7S3
ProtClustDB:CLSN2918116 Genevestigator:Q8L7S3 GO:GO:0001510
Uniprot:Q8L7S3
Length = 809
Score = 1490 (529.6 bits), Expect = 3.5e-202, Sum P(2) = 3.5e-202
Identities = 307/493 (62%), Positives = 362/493 (73%)
Query: 297 VKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGG 356
VKSARD VTPLA++SY+ QLE KK SI QMLKKL RNARKACPNG SLP+W++ SR+ GG
Sbjct: 255 VKSARDAVTPLAYLSYADQLEQKKTSIGQMLKKLARNARKACPNGNSLPQWVLTSRDRGG 314
Query: 357 LPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSE 416
L C LEGI+ SP+ NGYRNKCEFSVG SLQ KPTVGF LG+F GVTAVEEPVDCPNVS+
Sbjct: 315 LACNLEGIIESPITNGYRNKCEFSVGLSLQGKPTVGFSLGSFCAGVTAVEEPVDCPNVSK 374
Query: 417 IACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNIS 476
IA +YASIFQ+F++ S VWNRF++SGFWRQLTVREGR PG N E I+ I+
Sbjct: 375 IASQYASIFQKFIENSKFQVWNRFQHSGFWRQLTVREGRKPGV---FSNDEDAITR--IA 429
Query: 477 EVMLIAQVSSATFDDAVVNSEFERLXXXXXXXXXXSSPSLPLTALVIQDHQGVSNVAPAD 536
EVML+ QV D+A V +EFE L SSP+LPLT LV+Q+H G+SNVAP D
Sbjct: 430 EVMLMVQVCLTGSDEAEVATEFEELAKAFAEGARASSPTLPLTVLVVQNHSGISNVAPPD 489
Query: 537 APLRLLSIPKAD-GEPEE--SNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLG 593
APL++L+IP +D G +E +N + EARIHD I+NLRF ISPTAFFQVNT+ AEKLYS+
Sbjct: 490 APLQVLAIPISDNGTDQEQTTNVLTEARIHDHINNLRFSISPTAFFQVNTVTAEKLYSIA 549
Query: 594 GDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRF 653
GDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAV+DA RNA INGI NC+F
Sbjct: 550 GDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVADAERNATINGISNCKF 609
Query: 654 VCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPE 713
+C+KAEDVM SLLK YL+ + E+ +N D +P E + +
Sbjct: 610 ICSKAEDVMSSLLKQYLDVTQMEEAKPLSNAN---------DDLNKQIPSTEEMTNSE-- 658
Query: 714 NDIADSNCPEGSGK--EPQSQLQKDCTS-EGNSLAQP-FKNVVAIVDPPRGGLHPTVIKI 769
+AD N P + + E Q QKD +S E +P FKNVVAIVDPPR GLHP VIK
Sbjct: 659 -HVADQNLPPSNTQVEELQDNEQKDSSSLEPEKTTKPQFKNVVAIVDPPRSGLHPAVIKA 717
Query: 770 LRTHARLQRLLHI 782
LRTH RL+RL++I
Sbjct: 718 LRTHPRLKRLVYI 730
Score = 489 (177.2 bits), Expect = 3.5e-202, Sum P(2) = 3.5e-202
Identities = 98/225 (43%), Positives = 134/225 (59%)
Query: 26 PLQNADDEQIQPSIPQSTDDVTTTAAEKRKREDVATEGXXXXXXXXXXXXXXXXXXKTSL 85
P++ + +++ S +TD++ EKRKR D + KTSL
Sbjct: 28 PMETSSIDELPSSDSNATDNIEAVG-EKRKRAD--EDEKTNLESSDTKITTPSPWWKTSL 84
Query: 86 CSYFRKVGTCCHGSTCRYAHGEEELRIRPDNTWDPTSERAKKARKL-----EDGDKCEAK 140
CSYFR+ +C HG+ C+YAHGE ELR++PDNTWDPTSER KKA+ + E+ ++ E
Sbjct: 85 CSYFRREASCSHGNECKYAHGEAELRMKPDNTWDPTSERGKKAKAMKMSEHEEKEEDEVL 144
Query: 141 XXXXXXXXXXXXXXXXXXXXXXXXELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKK 200
LSKCLVHLP KW SD LKKFL + G+LYKSAKK++
Sbjct: 145 FTEQMMESIDGDEGGGGSVSVVDLSLSKCLVHLPNKWQSDELKKFLGEQGVLYKSAKKRR 204
Query: 201 GMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRSFDKN 245
GM VGFV FE+ EQL++ VE L+G ++ + LK+A+V+PR+FDKN
Sbjct: 205 GMIVGFVTFENAEQLQSGVEILDGKTVNSSNLKIADVLPRTFDKN 249
>ZFIN|ZDB-GENE-030131-6876 [details] [associations]
symbol:trmt2a "trm2 tRNA methyltransferase 2
homolog A (S. cerevisiae)" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008173 "RNA
methyltransferase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0016740
"transferase activity" evidence=IEA] [GO:0032259 "methylation"
evidence=IEA] [GO:0008168 "methyltransferase activity"
evidence=IEA] InterPro:IPR000504 InterPro:IPR010280
InterPro:IPR012677 Pfam:PF00076 Pfam:PF05958 PROSITE:PS01230
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6876
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006396
GO:GO:0008173 KO:K15332 GO:GO:0001510 CTD:27037 HOVERGEN:HBG052043
EMBL:BC045367 IPI:IPI00639711 RefSeq:NP_956223.1 UniGene:Dr.75151
ProteinModelPortal:Q7ZVY1 GeneID:334936 KEGG:dre:334936
InParanoid:Q7ZVY1 NextBio:20810602 ArrayExpress:Q7ZVY1
Uniprot:Q7ZVY1
Length = 619
Score = 305 (112.4 bits), Expect = 9.1e-54, Sum P(4) = 9.1e-54
Identities = 61/114 (53%), Positives = 77/114 (67%)
Query: 559 EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLT 618
E IH+ + L+F ISP +FFQ NT AAE LYS G+WA L D+ + DVCCGTGTIG++
Sbjct: 412 EEWIHEELLGLKFRISPHSFFQTNTPAAEILYSAVGEWAQLDQDSTVLDVCCGTGTIGIS 471
Query: 619 LAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
LA RV VIGIE+ AV DA NA+ NG+ N F C KAEDV ++L ++P
Sbjct: 472 LAKRVKKVIGIELCQEAVKDAEANAKANGLTNVEFHCGKAEDVFPTILNAVVSP 525
Score = 238 (88.8 bits), Expect = 9.1e-54, Sum P(4) = 9.1e-54
Identities = 59/156 (37%), Positives = 80/156 (51%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGG-LPCK 360
+ VTPL + Y QL K+ + +L+KL R N LP W+ +E + C
Sbjct: 192 NAVTPLWKVPYEEQLMMKEKEVEGVLQKLAREIGNN--NKAMLP-WLFVQKEKHNKMCCP 248
Query: 361 LEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIAC 419
LE I SPL GYRNKCEF +G + TVGF LG ++ G AV P + NV A
Sbjct: 249 LEAIRPSPLQTGYRNKCEFVIGVGADGEDRTVGFRLGKYKGGSCAVVSPSETTNVCSEAK 308
Query: 420 KYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGR 455
+ FQ+F++ + V++ G WRQLTVR R
Sbjct: 309 RVVQCFQQFIRTTPYAVYSPETYEGHWRQLTVRTTR 344
Score = 95 (38.5 bits), Expect = 9.1e-54, Sum P(4) = 9.1e-54
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 742 NSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
N++ P NV AIVDPPR GLH VI +R L+RL+++
Sbjct: 520 NAVVSP--NVTAIVDPPRAGLHSKVILAIRKAEHLKRLVYV 558
Score = 78 (32.5 bits), Expect = 9.1e-54, Sum P(4) = 9.1e-54
Identities = 27/104 (25%), Positives = 47/104 (45%)
Query: 172 HLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKT 231
+LP+ ++LKKFL HGI K FV F++ E+ A++ + G+ +
Sbjct: 80 NLPKYIGFNDLKKFLNKHGINPHKIKLLGRQKFAFVTFKNQEERDKAMKAVHGMQWKSNV 139
Query: 232 LKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASS 275
L V P++ P+ ++ ++S PG AE + S
Sbjct: 140 LSVRLAKPKA------DPILKKRKQEEEADSGQPG--AERNTGS 175
Score = 40 (19.1 bits), Expect = 8.0e-50, Sum P(4) = 8.0e-50
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 16 NGQDSTSHNEPLQNADDEQIQPSIPQSTDDVT 47
+GQ N Q A+ E+ +P Q + VT
Sbjct: 164 SGQPGAERNTGSQEAEKEEEEPPSIQIANAVT 195
>DICTYBASE|DDB_G0293244 [details] [associations]
symbol:DDB_G0293244 "tRNA
(uracil-5-)-methyltransferase" species:44689 "Dictyostelium
discoideum" [GO:0008173 "RNA methyltransferase activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0001510 "RNA methylation" evidence=IEA] InterPro:IPR010280
Pfam:PF05958 PROSITE:PS01230 dictyBase:DDB_G0293244
EMBL:AAFI02000200 GO:GO:0006396 eggNOG:COG2265 GO:GO:0008173
KO:K15332 GO:GO:0001510 OMA:YFHPQKL RefSeq:XP_629224.1
ProteinModelPortal:Q54C42 EnsemblProtists:DDB0191845 GeneID:8629106
KEGG:ddi:DDB_G0293244 InParanoid:Q54C42 Uniprot:Q54C42
Length = 646
Score = 284 (105.0 bits), Expect = 3.4e-53, Sum P(4) = 3.4e-53
Identities = 64/149 (42%), Positives = 91/149 (61%)
Query: 518 LTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTA 577
+T+L IQ + G+SN AP D L++ DG PE IH+++ +F +S A
Sbjct: 358 ITSLSIQLYDGISNSAPVD-----LAVETIDG-PEF--------IHENLLGCQFRVSANA 403
Query: 578 FFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVS 637
FFQ+NT A E LYS DWA + DT L D+CCGTGTIG ++ +V VIG+E++ AV
Sbjct: 404 FFQINTKATELLYSKVLDWAQVSQDTTLLDICCGTGTIGQCISKKVKKVIGLEISPDAVI 463
Query: 638 DAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
D+ NA++N I N ++ KAED + +LL
Sbjct: 464 DSINNAKLNKIDNAEYLVGKAEDTLPTLL 492
Score = 259 (96.2 bits), Expect = 3.4e-53, Sum P(4) = 3.4e-53
Identities = 61/170 (35%), Positives = 97/170 (57%)
Query: 291 DGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMK 350
D K+ + ++V P ++ Y QL+ KKN I +++ + RK + +LPEW++K
Sbjct: 150 DNRESKLLTIEEIVCPWYNIPYEEQLKKKKNQIEKVMINIKSTTRKESLH--NLPEWLVK 207
Query: 351 SREIGG--LPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEP 408
+ + C LE I+ SP+ YRNK ++++GY KP VGF LG G+T V +P
Sbjct: 208 RDKTKEEKMCCGLEEIVPSPVTENYRNKAQYTIGYDADNKPCVGFALGRTGNGITIVADP 267
Query: 409 VDCPNVSEIACKYASIFQEFLQQSDLPVWNR--F-KNS--GFWRQLTVRE 453
+ P +S+ + + +F E++ + +L NR F KNS GFWRQLTVR+
Sbjct: 268 SNAPLISKRSNEIRRLFNEYITEPNLGS-NRKPFDKNSHSGFWRQLTVRD 316
Score = 90 (36.7 bits), Expect = 3.4e-53, Sum P(4) = 3.4e-53
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 752 VAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
+ IVDPPRGGLH V+K +RT +++L+++
Sbjct: 504 IGIVDPPRGGLHGDVLKAIRTFEPIKKLVYV 534
Score = 83 (34.3 bits), Expect = 3.4e-53, Sum P(4) = 3.4e-53
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 167 SKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGIS 226
S + LP+ S KFL + + +K KK + G V F+SVE +E +G
Sbjct: 58 SMVIFGLPKYLDSKKFTKFLEQNNVPFKKIKKIVKESFGIVSFDSVEDRDKYLEYFQGFQ 117
Query: 227 IGNKT 231
+KT
Sbjct: 118 FNDKT 122
>UNIPROTKB|F1P0L5 [details] [associations]
symbol:TRMT2A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0008173 "RNA methyltransferase
activity" evidence=IEA] InterPro:IPR000504 InterPro:IPR010280
InterPro:IPR012677 Pfam:PF05958 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006396
GO:GO:0008173 GO:GO:0001510 GeneTree:ENSGT00530000063723
OMA:YFHPQKL EMBL:AADN02034792 IPI:IPI00591239
ProteinModelPortal:F1P0L5 Ensembl:ENSGALT00000003266 Uniprot:F1P0L5
Length = 615
Score = 283 (104.7 bits), Expect = 1.1e-52, Sum P(4) = 1.1e-52
Identities = 55/105 (52%), Positives = 74/105 (70%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I++ + L+F ISP AFFQVNT AAE LY+ +WA L ++ + D+CCGTGTIG++LA
Sbjct: 364 IYEELLGLKFRISPHAFFQVNTQAAEVLYAAIREWAQLSQESTVLDICCGTGTIGISLAK 423
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
+V VIGIE+ AV DA NA+IN + N F C KAED++ SL+
Sbjct: 424 KVKKVIGIELCQEAVQDAKANAQINELSNIEFHCGKAEDIVPSLI 468
Score = 257 (95.5 bits), Expect = 1.1e-52, Sum P(4) = 1.1e-52
Identities = 57/160 (35%), Positives = 85/160 (53%)
Query: 298 KSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGL 357
K DVVTPL + Y QL K+ Q+L+KL + N LP ++ ++ +
Sbjct: 137 KRIADVVTPLWAVPYEQQLAEKRRECEQVLQKLAKEIGNT--NRALLPWLFLQKQKYNKM 194
Query: 358 PCKLEGILGSPLVNGYRNKCEFSVGYSL-QAKPTVGFMLGNFREGVTAVEEPVDCPNVSE 416
C +EG+ SPL YRNKCEF +G + Q TVG LG ++ G AV EP D ++
Sbjct: 195 CCPVEGVKASPLQTEYRNKCEFLIGIGVNQEDKTVGCRLGKYKGGTCAVVEPFDTIHIPA 254
Query: 417 IACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRS 456
+A K FQ++++ + V++ G W+QLTVR R+
Sbjct: 255 VAKKVVKAFQDYIRSTPYSVYSPETYEGHWKQLTVRTSRN 294
Score = 88 (36.0 bits), Expect = 1.1e-52, Sum P(4) = 1.1e-52
Identities = 19/41 (46%), Positives = 29/41 (70%)
Query: 742 NSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
N LA P +N++ IVDPPR GLH VI +R +L++L+++
Sbjct: 469 NILA-P-QNLITIVDPPRAGLHSRVILAIRRAEQLKKLIYV 507
Score = 81 (33.6 bits), Expect = 1.1e-52, Sum P(4) = 1.1e-52
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 172 HLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKT 231
+LP+ +++KKFLA +G+ K T FV F+S E+ AV L G + +
Sbjct: 43 NLPKYIGFNDVKKFLAKYGLSPHKIKLLGKQTFAFVTFKSEEERDEAVRVLHGAAWKGRA 102
Query: 232 LKVANVVPRS 241
L V P++
Sbjct: 103 LGVRAAKPKA 112
>UNIPROTKB|F1PQ26 [details] [associations]
symbol:TRMT2A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008173 "RNA methyltransferase activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR010280 InterPro:IPR012677 Pfam:PF05958 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510
GeneTree:ENSGT00530000063723 OMA:YFHPQKL EMBL:AAEX03014849
Ensembl:ENSCAFT00000022517 Uniprot:F1PQ26
Length = 626
Score = 282 (104.3 bits), Expect = 8.1e-48, Sum P(4) = 8.1e-48
Identities = 63/123 (51%), Positives = 78/123 (63%)
Query: 545 PKADGEPEESNDVVEAR-IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDT 603
P +G P E V R IH+ + L F ISP AFFQVNTLAAE LY++ DWA L +
Sbjct: 377 PSQEGLPLEH--VAGDRCIHEDLLGLTFRISPHAFFQVNTLAAEVLYTVIQDWAQLDTGS 434
Query: 604 LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMG 663
+ DVCCGTGTIGL LA RV V+GIE+ AV DA NA N + N F C +AED++
Sbjct: 435 TVLDVCCGTGTIGLALAPRVKRVVGIELCQEAVEDARVNARDNELSNVEFHCGRAEDLVP 494
Query: 664 SLL 666
+L+
Sbjct: 495 ALV 497
Score = 244 (91.0 bits), Expect = 8.1e-48, Sum P(4) = 8.1e-48
Identities = 59/156 (37%), Positives = 80/156 (51%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPC-K 360
DVVTPL + Y+ QLE K+ Q+L+KL + N LP W++ R C
Sbjct: 170 DVVTPLWTVPYAEQLERKRLECEQVLQKLAKEIGST--NRALLP-WLLSQRHKHNKACCP 226
Query: 361 LEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIAC 419
LEG+ SP YRNKCEF VG + + TVG LG ++ G AV P D ++
Sbjct: 227 LEGVRPSPQQTEYRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAAPFDTVHIPGATK 286
Query: 420 KYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGR 455
+ FQEF++ + +N SG W+QLTVR R
Sbjct: 287 QVVKAFQEFIRSTPYSAYNPETYSGHWKQLTVRTSR 322
Score = 86 (35.3 bits), Expect = 8.1e-48, Sum P(4) = 8.1e-48
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 749 KNVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
+ +VAI+DPPR GLH VI +R L+RLL++
Sbjct: 503 QQLVAILDPPRAGLHSKVILAVRRAENLKRLLYV 536
Score = 51 (23.0 bits), Expect = 8.1e-48, Sum P(4) = 8.1e-48
Identities = 17/72 (23%), Positives = 29/72 (40%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L ++PR ++++FL G+ K FV F S + A+ L G
Sbjct: 77 LQNVPRHASFSDVRRFLGRFGLQPHKTKLFGQPPCAFVTFRSAAERDKALRVLHGALWKG 136
Query: 230 KTLKVANVVPRS 241
+ L V P++
Sbjct: 137 RPLSVRPARPKA 148
>UNIPROTKB|Q8IZ69 [details] [associations]
symbol:TRMT2A "tRNA (uracil-5-)-methyltransferase homolog
A" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0008173 "RNA methyltransferase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR010280 InterPro:IPR012677 Pfam:PF05958 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006396 EMBL:CH471176 eggNOG:COG2265 GO:GO:0008173 KO:K15332
GO:GO:0001510 EMBL:AC006547 UniGene:Hs.713579 EMBL:CR456354
EMBL:AK025106 EMBL:AK057029 EMBL:BC013352 EMBL:BC017184
EMBL:BC108251 IPI:IPI00337307 IPI:IPI00472176 RefSeq:NP_001244923.1
RefSeq:NP_073564.3 RefSeq:NP_892029.2 ProteinModelPortal:Q8IZ69
SMR:Q8IZ69 IntAct:Q8IZ69 STRING:Q8IZ69 PhosphoSite:Q8IZ69
DMDM:51316479 PaxDb:Q8IZ69 PRIDE:Q8IZ69 DNASU:27037
Ensembl:ENST00000252136 Ensembl:ENST00000403707
Ensembl:ENST00000404751 GeneID:27037 KEGG:hsa:27037 UCSC:uc002zrk.1
CTD:27037 GeneCards:GC22M020099 HGNC:HGNC:24974 HPA:HPA001077
MIM:611151 neXtProt:NX_Q8IZ69 PharmGKB:PA164726751
HOGENOM:HOG000232103 HOVERGEN:HBG052043 OrthoDB:EOG4RNB84
PhylomeDB:Q8IZ69 ChiTaRS:TRMT2A GenomeRNAi:27037 NextBio:49598
ArrayExpress:Q8IZ69 Bgee:Q8IZ69 CleanEx:HS_TRMT2A
Genevestigator:Q8IZ69 GermOnline:ENSG00000099899 Uniprot:Q8IZ69
Length = 625
Score = 279 (103.3 bits), Expect = 1.4e-47, Sum P(4) = 1.4e-47
Identities = 61/123 (49%), Positives = 79/123 (64%)
Query: 545 PKADGEPEESNDVVEAR-IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDT 603
P +G P E V R IH+ + L F ISP AFFQVNT AAE LY++ DWA L +
Sbjct: 377 PSQEGLPLEH--VAGDRCIHEDLLGLTFRISPHAFFQVNTPAAEVLYTVIQDWAQLDAGS 434
Query: 604 LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMG 663
++ DVCCGTGTIGL LA +V VIG+E+ AV DA NA+ N + N F C +AED++
Sbjct: 435 MVLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDARVNAQDNELSNVEFHCGRAEDLVP 494
Query: 664 SLL 666
+L+
Sbjct: 495 TLV 497
Score = 244 (91.0 bits), Expect = 1.4e-47, Sum P(4) = 1.4e-47
Identities = 59/161 (36%), Positives = 83/161 (51%)
Query: 297 VKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGG 356
V DVVTPL + Y+ QLE K+ Q+L+KL + N LP W+++ R
Sbjct: 165 VTRVADVVTPLWTVPYAEQLERKQLECEQVLQKLAKEIGST--NRALLP-WLLEQRHKHN 221
Query: 357 LPC-KLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNV 414
C LEG+ SP YRNKCEF VG + + TVG LG ++ G AV P D ++
Sbjct: 222 KACCPLEGVRPSPQQTEYRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAAPFDTVHI 281
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGR 455
E + FQEF++ + ++ +G W+QLTVR R
Sbjct: 282 PEATKQVVKAFQEFIRSTPYSAYDPETYTGHWKQLTVRTSR 322
Score = 88 (36.0 bits), Expect = 1.4e-47, Sum P(4) = 1.4e-47
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 749 KNVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
+++VAI+DPPR GLH VI +R L+RLL++
Sbjct: 503 QHLVAILDPPRAGLHSKVILAIRRAKNLRRLLYV 536
Score = 50 (22.7 bits), Expect = 1.4e-47, Sum P(4) = 1.4e-47
Identities = 17/72 (23%), Positives = 29/72 (40%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L ++PR ++++FL G+ K FV F S + A+ L G
Sbjct: 77 LQNVPRHASFSDVRRFLGRFGLQPHKTKLFGQPPCAFVTFRSAAERDKALRVLHGALWKG 136
Query: 230 KTLKVANVVPRS 241
+ L V P++
Sbjct: 137 RPLSVRLARPKA 148
Score = 37 (18.1 bits), Expect = 5.9e-25, Sum P(3) = 5.9e-25
Identities = 13/33 (39%), Positives = 14/33 (42%)
Query: 82 KTSLCSYFRKVGTCCHGSTCRYAHGEEELRIRP 114
KTSL +F G TC Y EE R P
Sbjct: 346 KTSLAQHFTAGPGRASGVTCLY-FVEEGQRKTP 377
>UNIPROTKB|F1RHM9 [details] [associations]
symbol:TRMT2A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008173 "RNA methyltransferase activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR010280 InterPro:IPR012677
Pfam:PF05958 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006396
GO:GO:0008173 GO:GO:0001510 GeneTree:ENSGT00530000063723
OMA:YFHPQKL EMBL:CT737345 UniGene:Ssc.15617
Ensembl:ENSSSCT00000011097 Uniprot:F1RHM9
Length = 620
Score = 266 (98.7 bits), Expect = 3.2e-45, Sum P(4) = 3.2e-45
Identities = 57/122 (46%), Positives = 77/122 (63%)
Query: 545 PKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTL 604
P +G P E + + I++ + L F ISP AFFQVNT AAE LY++ DWA L +
Sbjct: 372 PSQEGLPLE-HVAGDQCIYEDLLGLTFRISPHAFFQVNTPAAEVLYTVIQDWAQLDTGST 430
Query: 605 LFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664
+ DVCCGTGTIGL LA +V V+G+E++ AV DA NA N + N F C +AED++
Sbjct: 431 VLDVCCGTGTIGLALARKVKRVVGVELSQEAVDDARVNALDNELSNVEFHCGRAEDLVPP 490
Query: 665 LL 666
L+
Sbjct: 491 LV 492
Score = 242 (90.2 bits), Expect = 3.2e-45, Sum P(4) = 3.2e-45
Identities = 58/156 (37%), Positives = 81/156 (51%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPC-K 360
DVVTPL + Y+ QLE K+ Q+L+KL + N LP W++ R+ C
Sbjct: 165 DVVTPLWTVPYAEQLERKRLECEQVLQKLAKEIGNT--NRALLP-WLLSQRQKHNKACCM 221
Query: 361 LEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIAC 419
LEG+ SP YRNKCEF VG + + TVG LG ++ G AV P D ++
Sbjct: 222 LEGVKPSPQQTEYRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAAPFDTVHIPTATK 281
Query: 420 KYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGR 455
+ FQEF++ + ++ SG W+QLTVR R
Sbjct: 282 QVVKAFQEFIRSTPYSAYDPETYSGHWKQLTVRTSR 317
Score = 86 (35.3 bits), Expect = 3.2e-45, Sum P(4) = 3.2e-45
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 749 KNVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
+ +VAI+DPPR GLH VI +R L+RLL++
Sbjct: 498 QQLVAILDPPRAGLHSKVILAVRRAENLRRLLYV 531
Score = 46 (21.3 bits), Expect = 3.2e-45, Sum P(4) = 3.2e-45
Identities = 17/72 (23%), Positives = 29/72 (40%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L ++PR ++++FL G+ K FV F S + A+ L G
Sbjct: 69 LQNVPRHASFSDVRRFLGRFGLQPHKTKLFGQPPCAFVTFRSAAERDKALCVLHGALWKG 128
Query: 230 KTLKVANVVPRS 241
+ L V P++
Sbjct: 129 RPLSVRLARPKA 140
>UNIPROTKB|F1M569 [details] [associations]
symbol:Trmt2a "Protein Trmt2a" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0008173 "RNA methyltransferase
activity" evidence=IEA] InterPro:IPR000504 InterPro:IPR010280
InterPro:IPR012677 Pfam:PF05958 PROSITE:PS50102 SMART:SM00360
RGD:1310418 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 IPI:IPI00776864
Ensembl:ENSRNOT00000002580 ArrayExpress:F1M569 Uniprot:F1M569
Length = 614
Score = 260 (96.6 bits), Expect = 9.4e-45, Sum P(4) = 9.4e-45
Identities = 58/122 (47%), Positives = 75/122 (61%)
Query: 545 PKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTL 604
P +G P E + + I + + L F ISP AFFQVNT AAE LY++ +WA L +
Sbjct: 367 PSQEGLPLE-HMAGDQCIQEDLLGLTFRISPHAFFQVNTPAAEVLYTVIQEWAQLDGGST 425
Query: 605 LFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664
+ DVCCGTGTIGL LA +V VIGIE+ AV DA NA N + N F C +AED++
Sbjct: 426 VLDVCCGTGTIGLALAPKVKKVIGIELCQEAVEDARMNALTNELSNVEFHCGRAEDLVPG 485
Query: 665 LL 666
L+
Sbjct: 486 LV 487
Score = 238 (88.8 bits), Expect = 9.4e-45, Sum P(4) = 9.4e-45
Identities = 59/168 (35%), Positives = 86/168 (51%)
Query: 290 GDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIM 349
GD + A DVVTPL + Y+ QLE K+ ++L+KL + N LP W++
Sbjct: 149 GDNEPTATQIA-DVVTPLWTVPYTEQLEQKRLECERVLQKLAKEIGNT--NHALLP-WLL 204
Query: 350 KSREIGGLPC-KLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEE 407
R+ C LEG+ SP YRNKCEF VG + + TVG LG ++ G AV
Sbjct: 205 LQRQQHNKACCPLEGVKPSPQQTEYRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAP 264
Query: 408 PVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGR 455
P D ++ + + FQEF++ + ++ +G W+QLTVR R
Sbjct: 265 PFDTVHIPQATKQLVKAFQEFIRSTPYSAYDPETYTGHWKQLTVRTSR 312
Score = 84 (34.6 bits), Expect = 9.4e-45, Sum P(4) = 9.4e-45
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 749 KNVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
+ +VA++DPPR GLH VI +R ++RLL++
Sbjct: 493 QQLVAVLDPPRAGLHSKVILAMRKAENIKRLLYV 526
Score = 54 (24.1 bits), Expect = 9.4e-45, Sum P(4) = 9.4e-45
Identities = 17/72 (23%), Positives = 30/72 (41%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L ++PR ++++FL G+ K FV F S + A+ L G+
Sbjct: 67 LQNVPRHASFSDVRRFLGRFGLQSHKIKLFGQPPCAFVTFRSAAERDKALRVLHGVLWKG 126
Query: 230 KTLKVANVVPRS 241
+ L V P++
Sbjct: 127 RPLSVRLARPKA 138
>RGD|1310418 [details] [associations]
symbol:Trmt2a "tRNA methyltransferase 2 homolog A (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0008173 "RNA methyltransferase activity" evidence=IEA]
InterPro:IPR000504 InterPro:IPR010280 InterPro:IPR012677
Pfam:PF05958 PROSITE:PS50102 SMART:SM00360 RGD:1310418
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006396
eggNOG:COG2265 GO:GO:0008173 KO:K15332 GO:GO:0001510 EMBL:CH473999
CTD:27037 HOGENOM:HOG000232103 HOVERGEN:HBG052043 OrthoDB:EOG4RNB84
GeneTree:ENSGT00530000063723 EMBL:BC083619 IPI:IPI00391873
RefSeq:NP_001011895.1 UniGene:Rn.60258 Ensembl:ENSRNOT00000046183
GeneID:287953 KEGG:rno:287953 NextBio:627290 Genevestigator:Q5XIQ6
Uniprot:Q5XIQ6
Length = 615
Score = 260 (96.6 bits), Expect = 9.5e-45, Sum P(4) = 9.5e-45
Identities = 58/122 (47%), Positives = 75/122 (61%)
Query: 545 PKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTL 604
P +G P E + + I + + L F ISP AFFQVNT AAE LY++ +WA L +
Sbjct: 368 PSQEGLPLE-HMAGDQCIQEDLLGLTFRISPHAFFQVNTPAAEVLYTVIQEWAQLDGGST 426
Query: 605 LFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664
+ DVCCGTGTIGL LA +V VIGIE+ AV DA NA N + N F C +AED++
Sbjct: 427 VLDVCCGTGTIGLALAPKVKKVIGIELCQEAVEDARMNALTNELSNVEFHCGRAEDLVPG 486
Query: 665 LL 666
L+
Sbjct: 487 LV 488
Score = 238 (88.8 bits), Expect = 9.5e-45, Sum P(4) = 9.5e-45
Identities = 59/168 (35%), Positives = 86/168 (51%)
Query: 290 GDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIM 349
GD + A DVVTPL + Y+ QLE K+ ++L+KL + N LP W++
Sbjct: 150 GDNEPTATQIA-DVVTPLWTVPYTEQLEQKRLECERVLQKLAKEIGNT--NHALLP-WLL 205
Query: 350 KSREIGGLPC-KLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEE 407
R+ C LEG+ SP YRNKCEF VG + + TVG LG ++ G AV
Sbjct: 206 LQRQQHNKACCPLEGVKPSPQQTEYRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAP 265
Query: 408 PVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGR 455
P D ++ + + FQEF++ + ++ +G W+QLTVR R
Sbjct: 266 PFDTVHIPQATKQLVKAFQEFIRSTPYSAYDPETYTGHWKQLTVRTSR 313
Score = 84 (34.6 bits), Expect = 9.5e-45, Sum P(4) = 9.5e-45
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 749 KNVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
+ +VA++DPPR GLH VI +R ++RLL++
Sbjct: 494 QQLVAVLDPPRAGLHSKVILAMRKAENIKRLLYV 527
Score = 54 (24.1 bits), Expect = 9.5e-45, Sum P(4) = 9.5e-45
Identities = 17/72 (23%), Positives = 30/72 (41%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L ++PR ++++FL G+ K FV F S + A+ L G+
Sbjct: 68 LQNVPRHASFSDVRRFLGRFGLQSHKIKLFGQPPCAFVTFRSAAERDKALRVLHGVLWKG 127
Query: 230 KTLKVANVVPRS 241
+ L V P++
Sbjct: 128 RPLSVRLARPKA 139
>UNIPROTKB|D4A993 [details] [associations]
symbol:Trmt2a "Protein Trmt2a" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0008173 "RNA methyltransferase
activity" evidence=IEA] InterPro:IPR000504 InterPro:IPR010280
InterPro:IPR012677 Pfam:PF05958 PROSITE:PS50102 SMART:SM00360
RGD:1310418 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 IPI:IPI00952015
Ensembl:ENSRNOT00000068114 ArrayExpress:D4A993 Uniprot:D4A993
Length = 627
Score = 260 (96.6 bits), Expect = 1.1e-44, Sum P(4) = 1.1e-44
Identities = 58/122 (47%), Positives = 75/122 (61%)
Query: 545 PKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTL 604
P +G P E + + I + + L F ISP AFFQVNT AAE LY++ +WA L +
Sbjct: 368 PSQEGLPLE-HMAGDQCIQEDLLGLTFRISPHAFFQVNTPAAEVLYTVIQEWAQLDGGST 426
Query: 605 LFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664
+ DVCCGTGTIGL LA +V VIGIE+ AV DA NA N + N F C +AED++
Sbjct: 427 VLDVCCGTGTIGLALAPKVKKVIGIELCQEAVEDARMNALTNELSNVEFHCGRAEDLVPG 486
Query: 665 LL 666
L+
Sbjct: 487 LV 488
Score = 238 (88.8 bits), Expect = 1.1e-44, Sum P(4) = 1.1e-44
Identities = 59/168 (35%), Positives = 86/168 (51%)
Query: 290 GDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIM 349
GD + A DVVTPL + Y+ QLE K+ ++L+KL + N LP W++
Sbjct: 150 GDNEPTATQIA-DVVTPLWTVPYTEQLEQKRLECERVLQKLAKEIGNT--NHALLP-WLL 205
Query: 350 KSREIGGLPC-KLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEE 407
R+ C LEG+ SP YRNKCEF VG + + TVG LG ++ G AV
Sbjct: 206 LQRQQHNKACCPLEGVKPSPQQTEYRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAP 265
Query: 408 PVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGR 455
P D ++ + + FQEF++ + ++ +G W+QLTVR R
Sbjct: 266 PFDTVHIPQATKQLVKAFQEFIRSTPYSAYDPETYTGHWKQLTVRTSR 313
Score = 84 (34.6 bits), Expect = 1.1e-44, Sum P(4) = 1.1e-44
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 749 KNVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
+ +VA++DPPR GLH VI +R ++RLL++
Sbjct: 494 QQLVAVLDPPRAGLHSKVILAMRKAENIKRLLYV 527
Score = 54 (24.1 bits), Expect = 1.1e-44, Sum P(4) = 1.1e-44
Identities = 17/72 (23%), Positives = 30/72 (41%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L ++PR ++++FL G+ K FV F S + A+ L G+
Sbjct: 68 LQNVPRHASFSDVRRFLGRFGLQSHKIKLFGQPPCAFVTFRSAAERDKALRVLHGVLWKG 127
Query: 230 KTLKVANVVPRS 241
+ L V P++
Sbjct: 128 RPLSVRLARPKA 139
>UNIPROTKB|F2Z2W7 [details] [associations]
symbol:TRMT2A "tRNA (uracil-5-)-methyltransferase homolog
A" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025714
Pfam:PF13847 EMBL:AC006547 HGNC:HGNC:24974 ChiTaRS:TRMT2A
IPI:IPI00878912 ProteinModelPortal:F2Z2W7 SMR:F2Z2W7 PRIDE:F2Z2W7
Ensembl:ENST00000439169 OMA:YFHPQKL ArrayExpress:F2Z2W7 Bgee:F2Z2W7
Uniprot:F2Z2W7
Length = 643
Score = 244 (91.0 bits), Expect = 3.0e-43, Sum P(5) = 3.0e-43
Identities = 59/161 (36%), Positives = 83/161 (51%)
Query: 297 VKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGG 356
V DVVTPL + Y+ QLE K+ Q+L+KL + N LP W+++ R
Sbjct: 165 VTRVADVVTPLWTVPYAEQLERKQLECEQVLQKLAKEIGST--NRALLP-WLLEQRHKHN 221
Query: 357 LPC-KLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNV 414
C LEG+ SP YRNKCEF VG + + TVG LG ++ G AV P D ++
Sbjct: 222 KACCPLEGVRPSPQQTEYRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAAPFDTVHI 281
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGR 455
E + FQEF++ + ++ +G W+QLTVR R
Sbjct: 282 PEATKQVVKAFQEFIRSTPYSAYDPETYTGHWKQLTVRTSR 322
Score = 186 (70.5 bits), Expect = 3.0e-43, Sum P(5) = 3.0e-43
Identities = 42/77 (54%), Positives = 50/77 (64%)
Query: 545 PKADGEPEESNDVVEAR-IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDT 603
P +G P E V R IH+ + L F ISP AFFQVNT AAE LY++ DWA L +
Sbjct: 377 PSQEGLPLEH--VAGDRCIHEDLLGLTFRISPHAFFQVNTPAAEVLYTVIQDWAQLDAGS 434
Query: 604 LLFDVCCGTGTIGLTLA 620
++ DVCCGTGTIGL LA
Sbjct: 435 MVLDVCCGTGTIGLALA 451
Score = 95 (38.5 bits), Expect = 3.0e-43, Sum P(5) = 3.0e-43
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 619 LAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
L +V VIG+E+ AV DA NA+ N + N F C +AED++ +L+
Sbjct: 468 LFQKVKRVIGVELCPEAVEDARVNAQDNELSNVEFHCGRAEDLVPTLV 515
Score = 88 (36.0 bits), Expect = 3.0e-43, Sum P(5) = 3.0e-43
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 749 KNVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
+++VAI+DPPR GLH VI +R L+RLL++
Sbjct: 521 QHLVAILDPPRAGLHSKVILAIRRAKNLRRLLYV 554
Score = 50 (22.7 bits), Expect = 3.0e-43, Sum P(5) = 3.0e-43
Identities = 17/72 (23%), Positives = 29/72 (40%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L ++PR ++++FL G+ K FV F S + A+ L G
Sbjct: 77 LQNVPRHASFSDVRRFLGRFGLQPHKTKLFGQPPCAFVTFRSAAERDKALRVLHGALWKG 136
Query: 230 KTLKVANVVPRS 241
+ L V P++
Sbjct: 137 RPLSVRLARPKA 148
Score = 37 (18.1 bits), Expect = 4.5e-20, Sum P(4) = 4.5e-20
Identities = 13/33 (39%), Positives = 14/33 (42%)
Query: 82 KTSLCSYFRKVGTCCHGSTCRYAHGEEELRIRP 114
KTSL +F G TC Y EE R P
Sbjct: 346 KTSLAQHFTAGPGRASGVTCLY-FVEEGQRKTP 377
>UNIPROTKB|Q96GJ1 [details] [associations]
symbol:TRMT2B "tRNA (uracil(54)-C(5))-methyltransferase
homolog" species:9606 "Homo sapiens" [GO:0030697
"S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase
activity" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
GO:GO:0005739 InterPro:IPR025714 Pfam:PF13847 EMBL:Z97985
eggNOG:COG2265 EMBL:CH471115 GO:GO:0030697 EMBL:AL109952 CTD:79979
HOVERGEN:HBG108599 KO:K15331 InterPro:IPR025823 EMBL:AK022749
EMBL:AL832849 EMBL:AL133275 EMBL:BC007526 EMBL:BC008067
EMBL:BC009437 EMBL:BC020116 EMBL:BC034272 IPI:IPI00550091
IPI:IPI00747797 IPI:IPI00749054 RefSeq:NP_001161442.1
RefSeq:NP_001161443.1 RefSeq:NP_001161444.1 RefSeq:NP_079193.2
UniGene:Hs.496501 ProteinModelPortal:Q96GJ1 SMR:Q96GJ1
PhosphoSite:Q96GJ1 DMDM:74762656 PRIDE:Q96GJ1
Ensembl:ENST00000338687 Ensembl:ENST00000372935
Ensembl:ENST00000372936 Ensembl:ENST00000372939
Ensembl:ENST00000545398 GeneID:79979 KEGG:hsa:79979 UCSC:uc004egq.3
UCSC:uc004egv.3 GeneCards:GC0XM100264 H-InvDB:HIX0016920
H-InvDB:HIX0029044 HGNC:HGNC:25748 HPA:HPA035120 neXtProt:NX_Q96GJ1
PharmGKB:PA164726782 InParanoid:Q96GJ1 OMA:STMTRCS PhylomeDB:Q96GJ1
ChiTaRS:TRMT2B GenomeRNAi:79979 NextBio:70009 ArrayExpress:Q96GJ1
Bgee:Q96GJ1 CleanEx:HS_TRMT2B Genevestigator:Q96GJ1 Uniprot:Q96GJ1
Length = 504
Score = 245 (91.3 bits), Expect = 1.8e-39, Sum P(3) = 1.8e-39
Identities = 50/109 (45%), Positives = 65/109 (59%)
Query: 559 EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLT 618
E I + + +L+ ISP AFFQ+NT AE LY G+ + DT+L D+CCGTG IGL+
Sbjct: 302 EPYIFEELLSLKIRISPDAFFQINTAGAEMLYRTVGELTGVNSDTILLDICCGTGVIGLS 361
Query: 619 LAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLK 667
LA V+GIE+ AV DA A NGI N F +AE ++ LLK
Sbjct: 362 LAQHTSRVLGIELLEQAVEDARWTAAFNGITNSEFHTGQAEKILPGLLK 410
Score = 230 (86.0 bits), Expect = 1.8e-39, Sum P(3) = 1.8e-39
Identities = 59/152 (38%), Positives = 82/152 (53%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
DVVTPL +SY QL+ K + ++L++L + NGVS+ + KS L C L
Sbjct: 86 DVVTPLWRLSYEEQLKVKFAAQKKILQRLESYIQML--NGVSVTTAVPKSER---LSCLL 140
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
I+ SP++NGYRNK FSV P TVGF LG +R+G + N+ E +
Sbjct: 141 HPIIPSPVINGYRNKSTFSVNRGPDGNPKTVGFYLGTWRDGNVVCVQSNHLKNIPEKHSQ 200
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVR 452
A ++ FL+QS L F G+WR+LTVR
Sbjct: 201 VAQYYEVFLRQSPLEPCLVFHEGGYWRELTVR 232
Score = 66 (28.3 bits), Expect = 1.8e-39, Sum P(3) = 1.8e-39
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 749 KNVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
+++VA+V+P R GLH VI+ +R + L+ +
Sbjct: 416 QSIVAVVNPARAGLHYKVIQAIRNFRAIHTLVFV 449
>UNIPROTKB|E1BMX2 [details] [associations]
symbol:TRMT2A "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008173 "RNA methyltransferase activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR010280 InterPro:IPR012677
Pfam:PF05958 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006396
GO:GO:0008173 GO:GO:0001510 GeneTree:ENSGT00530000063723
OMA:YFHPQKL EMBL:DAAA02045786 EMBL:DAAA02045787 IPI:IPI00694530
ProteinModelPortal:E1BMX2 Ensembl:ENSBTAT00000026476 Uniprot:E1BMX2
Length = 591
Score = 268 (99.4 bits), Expect = 2.1e-38, Sum P(5) = 2.1e-38
Identities = 59/123 (47%), Positives = 77/123 (62%)
Query: 545 PKADGEPEESNDVVEAR-IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDT 603
P +G P E V R I + + L F ISP AFFQVNT AAE LY+L DWA L +
Sbjct: 343 PSQEGLPLEH--VAGDRCIREDVLGLTFRISPHAFFQVNTAAAEVLYTLIQDWAQLDAGS 400
Query: 604 LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMG 663
+ DVCCGTGTIGL LA +V V+G+E++ AV DA NA N + N F C +AE+++
Sbjct: 401 TVLDVCCGTGTIGLALARKVKRVVGVELSQEAVEDARVNALDNELSNVEFHCGRAEELVP 460
Query: 664 SLL 666
+L+
Sbjct: 461 ALV 463
Score = 145 (56.1 bits), Expect = 2.1e-38, Sum P(5) = 2.1e-38
Identities = 31/84 (36%), Positives = 44/84 (52%)
Query: 373 YRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQ 431
YRNKCEF VG + + TVG L ++ G AV P D ++ + FQEF++
Sbjct: 205 YRNKCEFLVGVGVDGEDNTVGCRLSKYKSGTCAVAAPFDTVHIPGATKQVVRAFQEFIRS 264
Query: 432 SDLPVWNRFKNSGFWRQLTVREGR 455
+ ++ SG W+QLTVR R
Sbjct: 265 TPYSAYDPETYSGHWKQLTVRTSR 288
Score = 78 (32.5 bits), Expect = 2.1e-38, Sum P(5) = 2.1e-38
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 749 KNVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
+ +VAI+DPPR GLH + +R ++RLL++
Sbjct: 469 QQLVAILDPPRAGLHSKAVLAVRRAENVRRLLYV 502
Score = 74 (31.1 bits), Expect = 2.1e-38, Sum P(5) = 2.1e-38
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTR 332
DVVTPL + Y QLE K+ Q+L+KL R
Sbjct: 157 DVVTPLWAVPYEEQLERKRQECEQVLQKLAR 187
Score = 44 (20.5 bits), Expect = 1.5e-23, Sum P(3) = 1.5e-23
Identities = 14/33 (42%), Positives = 15/33 (45%)
Query: 82 KTSLCSYFRKVGTCCHGSTCRYAHGEEELRIRP 114
KTSL YF + G TC Y EE R P
Sbjct: 312 KTSLAQYFMEGPGKASGVTCLY-FVEEGQRKTP 343
Score = 42 (19.8 bits), Expect = 2.1e-38, Sum P(5) = 2.1e-38
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEG 224
L ++PR ++++FL G+ K FV F S + A+ L G
Sbjct: 61 LQNVPRHASFSDVRRFLGRFGLQPHKTKLFGQPPCAFVTFRSAAERDKALCVLHG 115
>FB|FBgn0036838 [details] [associations]
symbol:CG3808 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008173 "RNA methyltransferase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR010280 InterPro:IPR012677 Pfam:PF05958 PROSITE:PS01230
PROSITE:PS01231 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006396 GO:GO:0008173
GO:GO:0001510 EMBL:AY061614 ProteinModelPortal:Q95R49 SMR:Q95R49
PRIDE:Q95R49 FlyBase:FBgn0036838 InParanoid:Q95R49
OrthoDB:EOG470RZC ArrayExpress:Q95R49 Bgee:Q95R49 Uniprot:Q95R49
Length = 615
Score = 239 (89.2 bits), Expect = 3.4e-37, Sum P(3) = 3.4e-37
Identities = 55/143 (38%), Positives = 76/143 (53%)
Query: 536 DAPLRLLSIPKADGEPEESNDVVE--------ARIHDSISNLRFCISPTAFFQVNTLAAE 587
DAP + S+ D + E+ + I D+I L+F ISP AFFQ+NT A
Sbjct: 342 DAPYKCSSLYYQDVKHREAGQTINPVEHISGSTHITDTIQGLQFRISPLAFFQINTEGAN 401
Query: 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEING 647
LY D DT + D+CCGTGTI L A V+G+E+ A+ DA NAE NG
Sbjct: 402 VLYQKAIDLVAPTKDTTMLDICCGTGTITLAFAKHCKKVMGVEIVPDAIKDAEFNAEANG 461
Query: 648 IKNCRFVCAKAEDVMGSLLKDYL 670
IKN +F A+D + S++++ L
Sbjct: 462 IKNAKFFTGNADDFIKSMVREAL 484
Score = 211 (79.3 bits), Expect = 3.4e-37, Sum P(3) = 3.4e-37
Identities = 62/205 (30%), Positives = 105/205 (51%)
Query: 296 KVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIG 355
K ++A + PL+H++Y Q++ K ++ +L K T+ RK P + P + K +
Sbjct: 156 KQRTAVEATCPLSHIAYDQQIKQKSEEMSALLAKYTQELRKVNPR--AKPH-LDKFQ--- 209
Query: 356 GLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVS 415
+L SP VNGYRNK EF+VG + + VGF LG + +G V E D P++
Sbjct: 210 -----FHEVLPSPTVNGYRNKNEFTVGKNSVGEVVVGFRLGCYSDGSVEVAEVADLPHLP 264
Query: 416 EIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENL-EVNISEVN 474
E A A FQ+ +++S +N N G +RQL VR + G+ + V + N+SE
Sbjct: 265 EQAKWAARSFQDLVRKSKFLPFNPDGNIGHFRQLMVRCSSATGELMLVAGIYSSNLSE-- 322
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFE 499
E + + Q + ++D ++ ++
Sbjct: 323 -DEQVELKQELKSFYEDLAKDAPYK 346
Score = 76 (31.8 bits), Expect = 3.4e-37, Sum P(3) = 3.4e-37
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 750 NVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
+++A+VDPPR GLH I +R+ + RL+++
Sbjct: 494 DLIAVVDPPRAGLHHRSIAAIRSADAINRLVYV 526
>UNIPROTKB|F1S1L6 [details] [associations]
symbol:LOC100517798 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005739 "mitochondrion" evidence=IEA]
GO:GO:0005739 InterPro:IPR025714 Pfam:PF13847
GeneTree:ENSGT00530000063723 InterPro:IPR025823 OMA:STMTRCS
EMBL:FP015837 Ensembl:ENSSSCT00000013656 PROSITE:PS51621
Uniprot:F1S1L6
Length = 496
Score = 257 (95.5 bits), Expect = 4.1e-37, Sum P(3) = 4.1e-37
Identities = 51/109 (46%), Positives = 66/109 (60%)
Query: 559 EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLT 618
E I + + L+ ISP AFFQ+NT AE LY G+ + + DT+L D+CCGTG IGL+
Sbjct: 298 EPHIFEDLLGLKIRISPDAFFQINTAGAEMLYRTVGELSGVNSDTILLDICCGTGVIGLS 357
Query: 619 LAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLK 667
LA V+GIE+ AV DA A NGI NC F +AE ++ LLK
Sbjct: 358 LAQYTSQVLGIELVEQAVEDARWTAAFNGITNCEFHTGRAEKILPQLLK 406
Score = 197 (74.4 bits), Expect = 4.1e-37, Sum P(3) = 4.1e-37
Identities = 54/152 (35%), Positives = 79/152 (51%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
DVVTPL +SY QL+ K + ++L++L + NGVS+ +S GL C L
Sbjct: 82 DVVTPLWRLSYEEQLKVKFEAQKKILQRLESYLQML--NGVSVTTAAPRSE---GLCCCL 136
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
I+ SP+++GYRNK FSV P TVG+ LG +R+ + N+ E +
Sbjct: 137 HPIIPSPVIDGYRNKSTFSVNRGPDGNPKTVGYYLGTWRDRNIVCVQSNHLKNIPEKHNQ 196
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVR 452
A ++ FL+QS + F G WR+L VR
Sbjct: 197 VAQYYEIFLRQSPMEPCLLFHEGGHWRELIVR 228
Score = 62 (26.9 bits), Expect = 4.1e-37, Sum P(3) = 4.1e-37
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 751 VVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
+VA+V+P R GLH V++ +R ++ L+ +
Sbjct: 414 IVAVVNPARAGLHYQVVQAIRNCRAIRTLVFV 445
>MGI|MGI:2442530 [details] [associations]
symbol:Trmt2b "TRM2 tRNA methyltransferase 2B" species:10090
"Mus musculus" [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0008168 "methyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0030697 "S-adenosylmethionine-dependent tRNA
(m5U54) methyltransferase activity" evidence=IEA] [GO:0032259
"methylation" evidence=IEA] MGI:MGI:2442530 GO:GO:0005739
InterPro:IPR025714 Pfam:PF13847 EMBL:AL672215 eggNOG:COG2265
GO:GO:0030697 HOGENOM:HOG000232103 GeneTree:ENSGT00530000063723
CTD:79979 HOVERGEN:HBG108599 KO:K15331 OrthoDB:EOG4T1HMF
InterPro:IPR025823 EMBL:AK028999 EMBL:AK049523 EMBL:BC056937
IPI:IPI00453580 RefSeq:NP_001161466.1 RefSeq:NP_766128.2
UniGene:Mm.289368 ProteinModelPortal:Q8BQJ6 SMR:Q8BQJ6
PhosphoSite:Q8BQJ6 PRIDE:Q8BQJ6 Ensembl:ENSMUST00000087541
Ensembl:ENSMUST00000113252 GeneID:215201 KEGG:mmu:215201
UCSC:uc009ufq.2 InParanoid:Q8BQJ6 NextBio:374634 Bgee:Q8BQJ6
Genevestigator:Q8BQJ6 Uniprot:Q8BQJ6
Length = 493
Score = 252 (93.8 bits), Expect = 2.0e-36, Sum P(3) = 2.0e-36
Identities = 49/109 (44%), Positives = 67/109 (61%)
Query: 559 EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLT 618
E I + + L+ ISP AFFQ+NT AE LY + G+ + + ++LL D+CCGTG IGL+
Sbjct: 291 EPHIFEDLLGLKIRISPDAFFQINTAGAEMLYRIIGELSGVNSESLLLDICCGTGVIGLS 350
Query: 619 LAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLK 667
+A R V GIE+ AV DA A NG+ NC F +AE ++ LLK
Sbjct: 351 VAQRASQVHGIELVEQAVEDARWTAAFNGVTNCEFHAGRAETILPQLLK 399
Score = 197 (74.4 bits), Expect = 2.0e-36, Sum P(3) = 2.0e-36
Identities = 56/156 (35%), Positives = 81/156 (51%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
DVVTPL +SY QL+ K + ++L+ L + + +GVS + + + GL C L
Sbjct: 75 DVVTPLWRLSYEAQLKVKFEAQKKLLQSLESHLKVL--HGVSDT---VAAHQSEGLRCLL 129
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVD-CPNVSEIAC 419
I+ SP GYRNK FSV S P TVG+ LG +++G V P + N+ E
Sbjct: 130 HPIIPSPTTTGYRNKSTFSVYRSPDGNPKTVGYYLGTWKDG-NVVCLPCNHLKNIPEKHS 188
Query: 420 KYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGR 455
+ A ++ FL+QS + F G WR+L VR R
Sbjct: 189 QVAQYYEVFLRQSSVEPCLLFHEGGHWRELVVRTNR 224
Score = 61 (26.5 bits), Expect = 2.0e-36, Sum P(3) = 2.0e-36
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 749 KNVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
K VA+V+P R GLH V++ +R + L+ +
Sbjct: 405 KLTVAVVNPARAGLHYRVVRAIRNCRTIHTLVFV 438
>MGI|MGI:96270 [details] [associations]
symbol:Trmt2a "TRM2 tRNA methyltransferase 2A" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008168 "methyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0032259 "methylation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 MGI:MGI:96270
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 InterPro:IPR025714
Pfam:PF13847 eggNOG:COG2265 KO:K15332 CTD:27037
HOGENOM:HOG000232103 HOVERGEN:HBG052043 OrthoDB:EOG4RNB84
ChiTaRS:TRMT2A EMBL:X56044 EMBL:X05830 EMBL:AK080170 EMBL:BC046976
IPI:IPI00403912 PIR:S01176 RefSeq:NP_001074468.1
RefSeq:NP_001074469.1 RefSeq:NP_001182134.1 UniGene:Mm.271798
ProteinModelPortal:Q8BNV1 SMR:Q8BNV1 PhosphoSite:Q8BNV1
PaxDb:Q8BNV1 PRIDE:Q8BNV1 Ensembl:ENSMUST00000140206 GeneID:15547
KEGG:mmu:15547 UCSC:uc007ync.2 GeneTree:ENSGT00530000063723
NextBio:288470 Bgee:Q8BNV1 Genevestigator:Q8BNV1
GermOnline:ENSMUSG00000022721 Uniprot:Q8BNV1
Length = 574
Score = 243 (90.6 bits), Expect = 2.1e-36, Sum P(3) = 2.1e-36
Identities = 63/176 (35%), Positives = 90/176 (51%)
Query: 290 GDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIM 349
GD S V DVVTPL + Y+ QLE K+ ++L+KL + N LP W++
Sbjct: 149 GD-SEPSVTQIADVVTPLWTVPYTEQLEQKRLECERVLQKLAKEIGNT--NRALLP-WLL 204
Query: 350 KSREIGGLPC-KLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEE 407
R+ C LEG+ SP YRNKCEF VG + K TVG LG ++ G AV
Sbjct: 205 LQRQQHNKACCPLEGVKPSPQQTEYRNKCEFLVGVGVDGKDNTVGCRLGKYKGGTCAVAA 264
Query: 408 PVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDV 463
P D ++ E + FQEF++ + ++ +G W+QLTVR S G+ + +
Sbjct: 265 PFDTVHIPEATKQVVKAFQEFIRSTPYSAYDPETYTGHWKQLTVRTS-SRGQAMAI 319
Score = 227 (85.0 bits), Expect = 2.1e-36, Sum P(3) = 2.1e-36
Identities = 58/128 (45%), Positives = 74/128 (57%)
Query: 545 PKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTL 604
P +G P E + + I + + L F ISP AFFQVNT AAE LY++ +WA L +
Sbjct: 367 PSQEGLPLE-HMAGDQCIQEDLLGLTFRISPHAFFQVNTPAAEVLYTVIQEWAQLDGGST 425
Query: 605 LFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664
+ DVCCGTGTIGL LA +V V+GIE+ AV DA NA N K + KAE++
Sbjct: 426 VLDVCCGTGTIGLALAPKVKRVVGIELCQEAVEDARMNALTNDSKVILAI-RKAENIK-R 483
Query: 665 LLKDYLNP 672
LL NP
Sbjct: 484 LLYVSCNP 491
Score = 46 (21.3 bits), Expect = 2.1e-36, Sum P(3) = 2.1e-36
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEG 224
L ++PR ++++FL G+ K FV F S + A+ L G
Sbjct: 67 LQNVPRHASFSDVRRFLGRFGLQSHKIKLFGQPPCAFVTFRSAAERDKALRVLHG 121
>UNIPROTKB|E1BRR1 [details] [associations]
symbol:LOC100858909 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0008173 "RNA methyltransferase activity" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR010280
Pfam:PF05958 GO:GO:0005739 GO:GO:0006396 GO:GO:0008173
GO:GO:0001510 GeneTree:ENSGT00530000063723 InterPro:IPR025823
OMA:STMTRCS PROSITE:PS51621 EMBL:AADN02013219 IPI:IPI00584445
Ensembl:ENSGALT00000008098 Uniprot:E1BRR1
Length = 471
Score = 275 (101.9 bits), Expect = 6.6e-35, Sum P(3) = 6.6e-35
Identities = 57/111 (51%), Positives = 71/111 (63%)
Query: 559 EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLT 618
E I + + +LRF ISP AFFQVNT AE LY + + + DT+L DVCCGTGTIGL+
Sbjct: 269 EPHIFEDVLDLRFRISPDAFFQVNTSGAEVLYRVVRELSQAAGDTVLLDVCCGTGTIGLS 328
Query: 619 LAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDY 669
LA V VIG+E+ A+ DA NA NGI NC F KAE V+ +LL +
Sbjct: 329 LARHVSKVIGVEIVQKAIEDARWNAAFNGISNCEFHSGKAEAVIPALLSSW 379
Score = 162 (62.1 bits), Expect = 6.6e-35, Sum P(3) = 6.6e-35
Identities = 48/153 (31%), Positives = 74/153 (48%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
D VTPL + Y QL+ K S+ ++L+ LT + + G ++ ++ GL C L
Sbjct: 58 DAVTPLWRLPYQEQLQVKYESLREVLQTLTSHLLEL---GGAV-------QDPSGLCCPL 107
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFR-EGVTAVEEPVDCPNVSEIAC 419
+ ++ SP +NGYRNK FSV P TVG +G R + V N
Sbjct: 108 QPVVPSPTINGYRNKSTFSVNRGPDGNPKTVGLYVGTGRARNIVCVRTD-HMKNTPLQHK 166
Query: 420 KYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVR 452
+ A +++F+++S L F G WR+L VR
Sbjct: 167 QVAQCYEQFIRRSPLDSCILFHEGGHWRELVVR 199
Score = 80 (33.2 bits), Expect = 3.6e-13, Sum P(3) = 3.6e-13
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 719 SNCPEGSGKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQR 778
SNC SGK ++ + +S + A+P +VA+V+P R G+H V+K +R+ ++R
Sbjct: 359 SNCEFHSGKA-EAVIPALLSSWED--ARP---LVAVVNPSRAGIHHRVVKAIRSCRAIRR 412
Query: 779 LLHI 782
LL+I
Sbjct: 413 LLYI 416
Score = 52 (23.4 bits), Expect = 6.6e-35, Sum P(3) = 6.6e-35
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 118 WD---PTSERAKKARKLEDGDKC 137
WD PT ERA K R+ +D + C
Sbjct: 23 WDCRQPTGERAAKRRRKKDREGC 45
>WB|WBGene00019241 [details] [associations]
symbol:H24K24.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008168
"methyltransferase activity" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0008173 "RNA methyltransferase
activity" evidence=IEA] InterPro:IPR000504 InterPro:IPR010280
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS01231 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006396 EMBL:FO081563 InterPro:IPR025714 Pfam:PF13847
eggNOG:COG2265 GO:GO:0008173 KO:K15332 GO:GO:0001510
GeneTree:ENSGT00530000063723 OMA:YFHPQKL RefSeq:NP_503353.2
ProteinModelPortal:Q9N5L0 SMR:Q9N5L0 PaxDb:Q9N5L0
EnsemblMetazoa:H24K24.4.1 EnsemblMetazoa:H24K24.4.2 GeneID:186775
KEGG:cel:CELE_H24K24.4 UCSC:H24K24.4 CTD:186775 WormBase:H24K24.4
HOGENOM:HOG000153284 InParanoid:Q9N5L0 NextBio:932950
Uniprot:Q9N5L0
Length = 603
Score = 225 (84.3 bits), Expect = 1.9e-34, Sum P(5) = 1.9e-34
Identities = 59/156 (37%), Positives = 82/156 (52%)
Query: 298 KSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGL 357
K+AR+ VTPLA M Y QLE K+ + +++KL R + N V+ + K +
Sbjct: 119 KTARESVTPLAEMEYGKQLELKQQNSVGVVEKLYR---QLIQNKVA---HLGKQTQFRDR 172
Query: 358 PCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEI 417
L IL +P GYRNKCEF++G+ L + VGF+ G F + V PVD VS
Sbjct: 173 V--LREILPAPKTAGYRNKCEFTIGHDLNGEICVGFVGGRFSKNQHFVIPPVDVDIVSTQ 230
Query: 418 ACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVRE 453
EF+++S L +N F GFWR LT+RE
Sbjct: 231 MMAIVGDVHEFVKESALEPFNEFDRKGFWRMLTIRE 266
Score = 146 (56.5 bits), Expect = 1.9e-34, Sum P(5) = 1.9e-34
Identities = 32/71 (45%), Positives = 43/71 (60%)
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGM-----VIGIEMNASAVSDAHRNAEINGIKNC-RFV 654
P T+L D+CCGTGTIG L + IGIEM A AV DA +NA+ N ++ C +++
Sbjct: 435 PGTILLDICCGTGTIGQCLLKNIQKSQKVCCIGIEMIAEAVEDAKQNAKQNKMETCCKYI 494
Query: 655 CAKAEDVMGSL 665
KAED S+
Sbjct: 495 AGKAEDTFRSM 505
Score = 83 (34.3 bits), Expect = 1.9e-34, Sum P(5) = 1.9e-34
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
I++S+ + RF +SP AFFQ N+ AA LYS G+ L
Sbjct: 337 IYESLLDCRFRVSPPAFFQTNSQAAAVLYSTIGEHCGL 374
Score = 71 (30.1 bits), Expect = 1.9e-34, Sum P(5) = 1.9e-34
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 751 VVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
VV ++DPPR G+H VI R ++RL+ +
Sbjct: 520 VVGVLDPPRAGMHEKVILACREMETMRRLIFV 551
Score = 52 (23.4 bits), Expect = 1.9e-34, Sum P(5) = 1.9e-34
Identities = 26/91 (28%), Positives = 38/91 (41%)
Query: 182 LKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTL--KVANVVP 239
L+K L D KS K + +V FE+ E + A+ ++G L ++A
Sbjct: 47 LEKILGD----VKSKKVRHMSDYAYVTFETPEDAQKAINLVDGYDYKKFILSAQLAATEV 102
Query: 240 RSFDKNIKSPMTLSGNAKQASESAVPGELAE 270
+SF + T K A ES P LAE
Sbjct: 103 KSF-RPANPENTEPAQQKTARESVTP--LAE 130
>ZFIN|ZDB-GENE-050809-101 [details] [associations]
symbol:trmt2b "TRM2 tRNA methyltransferase 2
homolog B (S. cerevisiae)" species:7955 "Danio rerio" [GO:0008173
"RNA methyltransferase activity" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0032259 "methylation" evidence=IEA] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0008168 "methyltransferase activity"
evidence=IEA] InterPro:IPR010280 Pfam:PF05958
ZFIN:ZDB-GENE-050809-101 eggNOG:COG2265 GO:GO:0030697 GO:GO:0001510
HOGENOM:HOG000232103 GeneTree:ENSGT00530000063723 EMBL:AL929344
EMBL:BC139682 IPI:IPI00512387 RefSeq:NP_001116415.1
UniGene:Dr.51718 ProteinModelPortal:A4QP75
Ensembl:ENSDART00000041702 Ensembl:ENSDART00000143745 GeneID:606657
KEGG:dre:606657 CTD:79979 HOVERGEN:HBG108599 InParanoid:A4QP75
KO:K15331 OrthoDB:EOG4T1HMF NextBio:20892508 Bgee:A4QP75
InterPro:IPR025823 Uniprot:A4QP75
Length = 480
Score = 227 (85.0 bits), Expect = 1.1e-31, Sum P(3) = 1.1e-31
Identities = 50/114 (43%), Positives = 68/114 (59%)
Query: 559 EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLT 618
+ I++ + +F ISP +FFQVN AAE LY + + L DVCCGTG IG++
Sbjct: 278 QTHIYEEVLGFKFRISPDSFFQVNREAAEALYKTVAELSQPCVGGTLLDVCCGTGAIGIS 337
Query: 619 LAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE----DVMGSLLKD 668
L+ ++ VIGIE+ AV DA NA +N + NC F+ KAE D+MGSL D
Sbjct: 338 LSPQMERVIGIELIEQAVEDAKFNAALNRVCNCEFLAGKAEVVLPDLMGSLSSD 391
Score = 158 (60.7 bits), Expect = 1.1e-31, Sum P(3) = 1.1e-31
Identities = 49/159 (30%), Positives = 81/159 (50%)
Query: 302 DVVTPLAHMSYSVQL----EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGL 357
D VTPL M+Y QL EH+K + +M+K+L+++ +A + ++ P L
Sbjct: 68 DTVTPLWRMTYEDQLQWKYEHQKKILLKMMKELSQDPTRAFSDHLNFPL----------L 117
Query: 358 PCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSE 416
P I+ SP+ +GYRNK FSV + P T+GF +G + G V ++
Sbjct: 118 P-----IVASPVRDGYRNKSTFSVNKGIDGNPKTLGFYIGTGKAGNIVC---VHADHLLS 169
Query: 417 IACKY---ASIFQEFLQQSDLPVWNRFKNSGFWRQLTVR 452
I K+ A +++F++ S L F + G WR++T+R
Sbjct: 170 IPSKHKMVARCYEDFIRLSPLRPCILFDDGGHWREITIR 208
Score = 82 (33.9 bits), Expect = 1.1e-31, Sum P(3) = 1.1e-31
Identities = 14/32 (43%), Positives = 24/32 (75%)
Query: 751 VVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
+ A+V+P R GLH V++ LR H+ ++RL++I
Sbjct: 394 LTAVVNPSRAGLHYRVVRALRNHSAIRRLVYI 425
>UNIPROTKB|Q8U1N4 [details] [associations]
symbol:PF1172 "tRNA (uracil(54)-C(5))-methyltransferase"
species:186497 "Pyrococcus furiosus DSM 3638" [GO:0030488 "tRNA
methylation" evidence=ISS] [GO:0030697
"S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase
activity" evidence=ISS] InterPro:IPR001566 InterPro:IPR010280
Pfam:PF05958 PROSITE:PS01230 PROSITE:PS01231 GO:GO:0046872
GO:GO:0051539 GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340
eggNOG:COG2265 HOGENOM:HOG000029870 ProtClustDB:CLSK253194
TIGRFAMs:TIGR00479 EMBL:AE009950 GenomeReviews:AE009950_GR
OMA:YPAQLRF GO:GO:0030697 RefSeq:NP_578901.1
ProteinModelPortal:Q8U1N4 SMR:Q8U1N4 PRIDE:Q8U1N4 DNASU:1469041
EnsemblBacteria:EBPYRT00000004407 GeneID:1469041 KEGG:pfu:PF1172
Uniprot:Q8U1N4
Length = 411
Score = 130 (50.8 bits), Expect = 3.7e-16, Sum P(5) = 3.7e-16
Identities = 33/103 (32%), Positives = 55/103 (53%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I + + +++ I P +FFQ N+ A L + + G + D+ G GT G+ LA
Sbjct: 236 IMEELDGVKYLIHPNSFFQTNSYQAVNLVKTVEKFVE-GEKVV--DMYSGVGTFGVYLAK 292
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE-DVMG 663
+ V+G + NA A+ A++NAEIN ++ FV + E D+ G
Sbjct: 293 KGMKVVGFDSNAFAIEMANKNAEINNVEAEFFVASDREVDIKG 335
Score = 98 (39.6 bits), Expect = 3.7e-16, Sum P(5) = 3.7e-16
Identities = 27/96 (28%), Positives = 50/96 (52%)
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
I+ SP + G+RN+ + +V ++ A +GF V VEE CP + + K
Sbjct: 99 IIPSPRIFGHRNRIDLAV--TVNA---IGFREKGKWWSVVDVEE---CPVFGKTSKKAIE 150
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGK 459
+E++++ + W ++SGF R + +REG+ G+
Sbjct: 151 RLREYIEEEKVSTWKIREDSGFLRYMVLREGKFTGE 186
Score = 74 (31.1 bits), Expect = 3.7e-16, Sum P(5) = 3.7e-16
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 754 IVDPPRGGLHPTVIKILRTH 773
IVDPPR GLHP ++K L H
Sbjct: 340 IVDPPRAGLHPKLVKRLNDH 359
Score = 49 (22.3 bits), Expect = 3.7e-16, Sum P(5) = 3.7e-16
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 307 LAHMSYSVQLEHKKNSIAQML 327
L H++Y+ QLE KK + ++L
Sbjct: 73 LQHINYNSQLEFKKEKLRKIL 93
Score = 45 (20.9 bits), Expect = 3.7e-16, Sum P(5) = 3.7e-16
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 44 DDVTTTAAEKRKREDVATE 62
D+V EK+KR +ATE
Sbjct: 29 DEVEVLKTEKQKRAKIATE 47
>TIGR_CMR|CHY_1112 [details] [associations]
symbol:CHY_1112 "23S rRNA (uracil-5-)-methyltransferase
RumA" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0008649 "rRNA
methyltransferase activity" evidence=ISS] InterPro:IPR001566
InterPro:IPR010280 Pfam:PF05958 PROSITE:PS01230 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003723 GO:GO:0006396
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG2265 TIGRFAMs:TIGR00479 GO:GO:0008173 GO:GO:0001510
InterPro:IPR002792 PROSITE:PS50926 Pfam:PF01938
HOGENOM:HOG000029867 KO:K03215 OMA:FFQVNPV RefSeq:YP_359958.1
ProteinModelPortal:Q3AD26 STRING:Q3AD26 GeneID:3727523
KEGG:chy:CHY_1112 PATRIC:21275362 ProtClustDB:CLSK2396891
BioCyc:CHYD246194:GJCN-1111-MONOMER Uniprot:Q3AD26
Length = 441
Score = 184 (69.8 bits), Expect = 6.7e-16, Sum P(4) = 6.7e-16
Identities = 38/106 (35%), Positives = 60/106 (56%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I + + + + ++P +FFQ+N + AEK+Y + D+ DLG ++FD G G++ L A
Sbjct: 255 ITEELLGISYRLTPLSFFQINPVQAEKIYRIALDYLDLGKTDMVFDGYSGVGSLTLPAAR 314
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLK 667
V+G+E AV A NA++NGI N F K E+ + LLK
Sbjct: 315 IAASVVGVEEIRDAVEVAKTNAKLNGIANVNFFAGKVEEKLPWLLK 360
Score = 84 (34.6 bits), Expect = 6.7e-16, Sum P(4) = 6.7e-16
Identities = 36/147 (24%), Positives = 64/147 (43%)
Query: 348 IMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEE 407
IMK +IG + + +L + YR K F+ G S Q K +G+ + + V
Sbjct: 98 IMK--KIGRIDAPINSVLPNFAFYRYRQKVHFTFGSS-QNKLAIGYF--DRKNNWFPV-- 150
Query: 408 PVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGK---PLDVE 464
DC + + A E L L + F ++G R L VR+ + G+ +
Sbjct: 151 -TDCLIADKSLVEVAHYVTEILDAFKLKAY--FNDAGVLRHLVVRKSSTTGEIQVVITAV 207
Query: 465 NLEVNISEVNISEVMLIAQVSSATFDD 491
L N+ E+ ++++L ++ S TF +
Sbjct: 208 KLNFNVKEI-AAKILLNPEIQSLTFHE 233
Score = 44 (20.5 bits), Expect = 6.7e-16, Sum P(4) = 6.7e-16
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTR 332
L ++ Y QL KK + ++KK+ R
Sbjct: 79 LQNLDYEQQLVLKKTKVYNIMKKIGR 104
Score = 41 (19.5 bits), Expect = 6.7e-16, Sum P(4) = 6.7e-16
Identities = 9/30 (30%), Positives = 21/30 (70%)
Query: 754 IVDPPRGGLHPTVIK-ILRTHARLQRLLHI 782
I+DPPR G+ V++ I++ + +R++++
Sbjct: 369 ILDPPREGVKKEVLEEIIKLNP--ERIVYV 396
>TAIR|locus:2094776 [details] [associations]
symbol:AT3G21300 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0008173 "RNA methyltransferase activity" evidence=IEA;ISS]
InterPro:IPR001566 InterPro:IPR010280 Pfam:PF05958 PROSITE:PS01231
EMBL:CP002686 EMBL:AB023045 GO:GO:0003723 GO:GO:0006396
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
TIGRFAMs:TIGR00479 GO:GO:0008173 GO:GO:0001510 KO:K00599
InterPro:IPR002792 PROSITE:PS50926 OMA:FFQVNPV IPI:IPI00516831
RefSeq:NP_188767.2 UniGene:At.38085 ProteinModelPortal:Q9LU28
SMR:Q9LU28 STRING:Q9LU28 PRIDE:Q9LU28 EnsemblPlants:AT3G21300.1
GeneID:821684 KEGG:ath:AT3G21300 TAIR:At3g21300 PhylomeDB:Q9LU28
ProtClustDB:CLSN2680853 Genevestigator:Q9LU28 Uniprot:Q9LU28
Length = 554
Score = 204 (76.9 bits), Expect = 3.5e-15, Sum P(4) = 3.5e-15
Identities = 46/95 (48%), Positives = 60/95 (63%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPD--TLLFDVCCGTGTIGLTL 619
I + + L F IS +FFQ NT AE LY L + A L D ++ D+ CGTGTIGLTL
Sbjct: 358 ITEVLRGLTFQISANSFFQTNTHQAEVLYKLIEESAGLKGDGSEVVLDLFCGTGTIGLTL 417
Query: 620 AHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
A R V G E+ A++DAH+NA+INGI+N F+
Sbjct: 418 ARRAKHVYGYEVVPQAITDAHKNAQINGIENATFI 452
Score = 59 (25.8 bits), Expect = 3.5e-15, Sum P(4) = 3.5e-15
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 725 SGKEPQSQLQKDCTSEGNSLAQPF-KNVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
+G E + +Q D G F K + I DP R G+H +IK L + R++++
Sbjct: 444 NGIENATFIQGDLNKIGEDFGNNFPKPDIVISDPNRPGMHMKLIKFL-LKLKSPRIIYV 501
Score = 49 (22.3 bits), Expect = 3.5e-15, Sum P(4) = 3.5e-15
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 356 GLPCKLEGILGSPLVNGYRNKCEFSVG 382
GL L+ I+ + YRNK EFS G
Sbjct: 182 GLEIVLKPIVACDIQFHYRNKMEFSFG 208
Score = 39 (18.8 bits), Expect = 3.5e-15, Sum P(4) = 3.5e-15
Identities = 6/24 (25%), Positives = 15/24 (62%)
Query: 309 HMSYSVQLEHKKNSIAQMLKKLTR 332
++SY QL K+ + ++++ + R
Sbjct: 152 NLSYEAQLRAKEEQVHELIRHVGR 175
>GENEDB_PFALCIPARUM|PF11_0348 [details] [associations]
symbol:PF11_0348 "hypothetical protein"
species:5833 "Plasmodium falciparum" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0020011 "apicoplast" evidence=RCA]
InterPro:IPR010280 Pfam:PF05958 PROSITE:PS01230 PROSITE:PS01231
GO:GO:0030697 GO:GO:0001510 EMBL:AE014186 RefSeq:XP_001348019.2
ProteinModelPortal:Q8II27 EnsemblProtists:PF11_0348:mRNA
GeneID:810895 KEGG:pfa:PF11_0348 EuPathDB:PlasmoDB:PF3D7_1133800
HOGENOM:HOG000282436 ProtClustDB:CLSZ2432401 Uniprot:Q8II27
Length = 857
Score = 160 (61.4 bits), Expect = 1.4e-14, Sum P(5) = 1.4e-14
Identities = 34/113 (30%), Positives = 68/113 (60%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL--GPDTLLFDVCCGTGTIGLTL 619
+ ++I + +F ++P+ FFQVN + + LY D+ ++ G +FD+CCGTGTI +
Sbjct: 658 LEETILDNKFLLTPSCFFQVNRDSCQILYKRVIDYINIKEGIKNYIFDLCCGTGTISICA 717
Query: 620 AHRVGM----VIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
++ + +IGI++ S++ A++NA++N I N +F+ + E+ +K+
Sbjct: 718 SNVLKSNDVHIIGIDICESSIISANKNAKMNNINNYKFLHGRVEEFFQKEIKN 770
Score = 81 (33.6 bits), Expect = 1.4e-14, Sum P(5) = 1.4e-14
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 750 NVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
N++ IVDPPR GL +V+ IL H + +++++
Sbjct: 777 NIICIVDPPRNGLANSVLNILSAHHLINQIIYV 809
Score = 78 (32.5 bits), Expect = 1.4e-14, Sum P(5) = 1.4e-14
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 373 YRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSE 416
YRNKCEF++ Y +GF++G + T +++ N SE
Sbjct: 453 YRNKCEFTISYDENKNVEIGFVVGKMK---TCIKDATQDKNSSE 493
Score = 41 (19.5 bits), Expect = 1.4e-14, Sum P(5) = 1.4e-14
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 296 KVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNAR 335
K KS + VTP Y Q+ K N + + ++ N +
Sbjct: 322 KFKSIENFVTPFYKYPYQEQIIIKHNFLKKCKDQILFNLK 361
Score = 39 (18.8 bits), Expect = 1.4e-14, Sum P(5) = 1.4e-14
Identities = 16/69 (23%), Positives = 28/69 (40%)
Query: 176 KWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235
KW +N+K D I K + +++F+S + LK + +E N
Sbjct: 129 KWLRNNIKATFYDTYI-------PKNKPLAYIRFKSYDDLKTFEKLIENKRFYNDDSLSL 181
Query: 236 NVVPRSFDK 244
+ R F+K
Sbjct: 182 IKINRLFNK 190
>UNIPROTKB|Q8II27 [details] [associations]
symbol:PF11_0348 "RNA (Uracil-5-)methyltransferase,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0020011 "apicoplast" evidence=RCA]
InterPro:IPR010280 Pfam:PF05958 PROSITE:PS01230 PROSITE:PS01231
GO:GO:0030697 GO:GO:0001510 EMBL:AE014186 RefSeq:XP_001348019.2
ProteinModelPortal:Q8II27 EnsemblProtists:PF11_0348:mRNA
GeneID:810895 KEGG:pfa:PF11_0348 EuPathDB:PlasmoDB:PF3D7_1133800
HOGENOM:HOG000282436 ProtClustDB:CLSZ2432401 Uniprot:Q8II27
Length = 857
Score = 160 (61.4 bits), Expect = 1.4e-14, Sum P(5) = 1.4e-14
Identities = 34/113 (30%), Positives = 68/113 (60%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL--GPDTLLFDVCCGTGTIGLTL 619
+ ++I + +F ++P+ FFQVN + + LY D+ ++ G +FD+CCGTGTI +
Sbjct: 658 LEETILDNKFLLTPSCFFQVNRDSCQILYKRVIDYINIKEGIKNYIFDLCCGTGTISICA 717
Query: 620 AHRVGM----VIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
++ + +IGI++ S++ A++NA++N I N +F+ + E+ +K+
Sbjct: 718 SNVLKSNDVHIIGIDICESSIISANKNAKMNNINNYKFLHGRVEEFFQKEIKN 770
Score = 81 (33.6 bits), Expect = 1.4e-14, Sum P(5) = 1.4e-14
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 750 NVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
N++ IVDPPR GL +V+ IL H + +++++
Sbjct: 777 NIICIVDPPRNGLANSVLNILSAHHLINQIIYV 809
Score = 78 (32.5 bits), Expect = 1.4e-14, Sum P(5) = 1.4e-14
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 373 YRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSE 416
YRNKCEF++ Y +GF++G + T +++ N SE
Sbjct: 453 YRNKCEFTISYDENKNVEIGFVVGKMK---TCIKDATQDKNSSE 493
Score = 41 (19.5 bits), Expect = 1.4e-14, Sum P(5) = 1.4e-14
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 296 KVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNAR 335
K KS + VTP Y Q+ K N + + ++ N +
Sbjct: 322 KFKSIENFVTPFYKYPYQEQIIIKHNFLKKCKDQILFNLK 361
Score = 39 (18.8 bits), Expect = 1.4e-14, Sum P(5) = 1.4e-14
Identities = 16/69 (23%), Positives = 28/69 (40%)
Query: 176 KWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235
KW +N+K D I K + +++F+S + LK + +E N
Sbjct: 129 KWLRNNIKATFYDTYI-------PKNKPLAYIRFKSYDDLKTFEKLIENKRFYNDDSLSL 181
Query: 236 NVVPRSFDK 244
+ R F+K
Sbjct: 182 IKINRLFNK 190
>TIGR_CMR|GSU_1452 [details] [associations]
symbol:GSU_1452 "RNA methyltransferase, TrmA family"
species:243231 "Geobacter sulfurreducens PCA" [GO:0001510 "RNA
methylation" evidence=ISS] [GO:0006400 "tRNA modification"
evidence=ISS] [GO:0008175 "tRNA methyltransferase activity"
evidence=ISS] InterPro:IPR001566 InterPro:IPR010280 Pfam:PF05958
PROSITE:PS01230 PROSITE:PS01231 GO:GO:0046872 GO:GO:0051539
GO:GO:0003723 GO:GO:0006396 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG2265 TIGRFAMs:TIGR00479 GO:GO:0008173 GO:GO:0001510
InterPro:IPR002792 PROSITE:PS50926 HOGENOM:HOG000029867 KO:K03215
OMA:FFQVNPV RefSeq:NP_952503.1 ProteinModelPortal:Q74D67
GeneID:2687765 KEGG:gsu:GSU1452 PATRIC:22025747
ProtClustDB:CLSK2391137 BioCyc:GSUL243231:GH27-1431-MONOMER
Uniprot:Q74D67
Length = 495
Score = 178 (67.7 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 39/105 (37%), Positives = 58/105 (55%)
Query: 564 DSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV 623
+ + +RF ISP +FFQVN+ A +Y W+ L + D+ CG G I L LA
Sbjct: 283 EELGGIRFTISPRSFFQVNSGGARIIYETVRQWSSLTGKESVVDLYCGIGGIALFLAGTA 342
Query: 624 GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
V GIE+ +AV+DA NA +N I NC F A +++ L+++
Sbjct: 343 REVHGIEVVEAAVNDAESNARLNRIHNCSFEAGDAAELIEELVEE 387
Score = 67 (28.6 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 27/111 (24%), Positives = 47/111 (42%)
Query: 365 LGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASI 424
L SP YRN + V + + +P +G +R V + CP + + +
Sbjct: 134 LPSPNQLHYRNSAKLVVSGTFR-RPVIGI----YRRNSHQVMDIGTCPLHHPLINRVVTA 188
Query: 425 FQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDV-ENLEVNISEVN 474
+E + + + V+N SG R L VR G + V +E N +E++
Sbjct: 189 VKEGIAKCKVQVYNPRTGSGLLRYLVVRISERTGTAMAVFVTVERNYNEIH 239
>UNIPROTKB|O58864 [details] [associations]
symbol:PH1137 "tRNA (uracil(54)-C(5))-methyltransferase"
species:70601 "Pyrococcus horikoshii OT3" [GO:0030488 "tRNA
methylation" evidence=ISS] [GO:0030697
"S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase
activity" evidence=ISS] InterPro:IPR001566 InterPro:IPR010280
Pfam:PF05958 PROSITE:PS01230 PROSITE:PS01231 GO:GO:0046872
GO:GO:0051539 GO:GO:0003723 EMBL:BA000001 GenomeReviews:BA000001_GR
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG2265
HOGENOM:HOG000029870 ProtClustDB:CLSK253194 TIGRFAMs:TIGR00479
GO:GO:0030697 PIR:C71055 RefSeq:NP_143040.1
ProteinModelPortal:O58864 SMR:O58864
EnsemblBacteria:EBPYRT00000000785 GeneID:1443456 KEGG:pho:PH1137
OMA:LNGLNNC BioCyc:PHOR70601:GJWR-1127-MONOMER Uniprot:O58864
Length = 407
Score = 110 (43.8 bits), Expect = 2.7e-12, Sum P(4) = 2.7e-12
Identities = 28/87 (32%), Positives = 45/87 (51%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I + + ++ + I P +FFQ N+ A L + + G L D+ G GT G+ LA
Sbjct: 235 ITEKLDDVIYLIHPNSFFQTNSYQAVNLVKKVSELVE-GERVL--DMYSGVGTFGIYLAK 291
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGI 648
R V+G + N A+ A +NA+IN +
Sbjct: 292 RGFKVVGFDSNEFAIEMARKNAKINKV 318
Score = 102 (41.0 bits), Expect = 2.7e-12, Sum P(4) = 2.7e-12
Identities = 26/97 (26%), Positives = 54/97 (55%)
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFM-LGNFREGVTAVEEPVDCPNVSEIACKYA 422
++ SP + G+RN+ + +V +++ +GF G + + + ++E CP + + K
Sbjct: 98 VIPSPRIFGHRNRIDLAV--TVEG---IGFRERGKWWK-IVDIQE---CPVFGKTSRKAI 148
Query: 423 SIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGK 459
+EF+++ + VWN K+ GF R + +REG+ G+
Sbjct: 149 ERLREFIEEERISVWNVKKDEGFLRYMVLREGKFTGE 185
Score = 65 (27.9 bits), Expect = 2.7e-12, Sum P(4) = 2.7e-12
Identities = 13/17 (76%), Positives = 14/17 (82%)
Query: 754 IVDPPRGGLHPTVIKIL 770
IVDPPR GLHP +IK L
Sbjct: 339 IVDPPRVGLHPKLIKKL 355
Score = 48 (22.0 bits), Expect = 2.7e-12, Sum P(4) = 2.7e-12
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 307 LAHMSYSVQLEHKKNSIAQML 327
L H+SY QLE K I ++L
Sbjct: 72 LQHLSYDYQLEFKGERIRRLL 92
>UNIPROTKB|Q9UZR7 [details] [associations]
symbol:PYRAB10780 "tRNA
(uracil(54)-C(5))-methyltransferase" species:272844 "Pyrococcus
abyssi GE5" [GO:0030488 "tRNA methylation" evidence=IDA]
[GO:0030697 "S-adenosylmethionine-dependent tRNA (m5U54)
methyltransferase activity" evidence=IDA] InterPro:IPR001566
InterPro:IPR010280 Pfam:PF05958 PROSITE:PS01230 PROSITE:PS01231
GO:GO:0046872 GO:GO:0051539 GO:GO:0003723 Gene3D:2.40.50.140
InterPro:IPR012340 EMBL:AJ248286 EMBL:HE613800
GenomeReviews:AL096836_GR eggNOG:COG2265 HOGENOM:HOG000029870
ProtClustDB:CLSK253194 InterPro:IPR015985 Pfam:PF03848
TIGRFAMs:TIGR00479 PIR:H75085 RefSeq:NP_126758.1 PDB:2JJQ PDB:2VS1
PDBsum:2JJQ PDBsum:2VS1 ProteinModelPortal:Q9UZR7 SMR:Q9UZR7
EnsemblBacteria:EBPYRT00000003914 GeneID:1496434 KEGG:pab:PAB0719
OMA:YPAQLRF EvolutionaryTrace:Q9UZR7 GO:GO:0030697 Uniprot:Q9UZR7
Length = 405
Score = 112 (44.5 bits), Expect = 3.2e-12, Sum P(4) = 3.2e-12
Identities = 32/100 (32%), Positives = 48/100 (48%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I + + ++ + I P +FFQ N+ A L + + G L D+ G GT G+ LA
Sbjct: 234 IRERLDDVDYLIHPNSFFQTNSYQAVNLVRKVSELVE-GEKIL--DMYSGVGTFGIYLAK 290
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661
R V G + N A+ A RN EIN + + F A +V
Sbjct: 291 RGFNVKGFDSNEFAIEMARRNVEINNV-DAEFEVASDREV 329
Score = 98 (39.6 bits), Expect = 3.2e-12, Sum P(4) = 3.2e-12
Identities = 24/93 (25%), Positives = 50/93 (53%)
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFM-LGNFREGVTAVEEPVDCPNVSEIACKYA 422
++ SP + G+RN+ + ++ K +GF G + + + ++E CP + + +
Sbjct: 98 VVPSPKIFGHRNRIDLAI-----TKDGIGFRERGKWWK-IVDIDE---CPVFGKTSREAI 148
Query: 423 SIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGR 455
+EF+++ + VWN K+ GF R + +REG+
Sbjct: 149 ERLKEFIEEEKISVWNIKKDEGFLRYMVLREGK 181
Score = 67 (28.6 bits), Expect = 3.2e-12, Sum P(4) = 3.2e-12
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 754 IVDPPRGGLHPTVIKIL 770
IVDPPR GLHP ++K L
Sbjct: 338 IVDPPRAGLHPRLVKRL 354
Score = 47 (21.6 bits), Expect = 3.2e-12, Sum P(4) = 3.2e-12
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 307 LAHMSYSVQLEHKKNSIAQML 327
L H++Y QLE K+ + ++L
Sbjct: 72 LQHLNYDYQLEFKRKKLKRIL 92
Score = 44 (20.5 bits), Expect = 7.4e-06, Sum P(3) = 7.4e-06
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 210 ESVEQLKNAVEELEGISIGN 229
E++E+LK +EE E IS+ N
Sbjct: 146 EAIERLKEFIEE-EKISVWN 164
Score = 40 (19.1 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 1 MASFPTETLNLPPPINGQDSTS 22
M +F T+ NLP P N D S
Sbjct: 187 MVNFVTKEGNLPDPTNYFDFDS 208
>TIGR_CMR|BA_0333 [details] [associations]
symbol:BA_0333 "RNA methyltransferase, TrmA family"
species:198094 "Bacillus anthracis str. Ames" [GO:0008175 "tRNA
methyltransferase activity" evidence=ISS] [GO:0009451 "RNA
modification" evidence=ISS] InterPro:IPR001566 InterPro:IPR003402
InterPro:IPR010280 Pfam:PF02475 Pfam:PF05958 PROSITE:PS01230
PROSITE:PS01231 GO:GO:0046872 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0051539 GO:GO:0003723 GO:GO:0006396
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG2265 TIGRFAMs:TIGR00479 GO:GO:0008173 GO:GO:0001510
InterPro:IPR002792 PROSITE:PS50926 Pfam:PF01938
HOGENOM:HOG000029867 KO:K03215 OMA:FFQVNPV ProtClustDB:CLSK872793
RefSeq:NP_842880.1 RefSeq:YP_016949.1 RefSeq:YP_026598.1
ProteinModelPortal:Q81ZD6 IntAct:Q81ZD6 DNASU:1086870
EnsemblBacteria:EBBACT00000008764 EnsemblBacteria:EBBACT00000018128
EnsemblBacteria:EBBACT00000020474 GeneID:1086870 GeneID:2816104
GeneID:2852228 KEGG:ban:BA_0333 KEGG:bar:GBAA_0333 KEGG:bat:BAS0318
BioCyc:BANT260799:GJAJ-360-MONOMER
BioCyc:BANT261594:GJ7F-370-MONOMER Uniprot:Q81ZD6
Length = 458
Score = 173 (66.0 bits), Expect = 5.4e-12, Sum P(4) = 5.4e-12
Identities = 38/107 (35%), Positives = 59/107 (55%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I+D I +++F IS +F+QVN + LY ++A L + + D CG G+I L LA
Sbjct: 272 IYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGIGSISLFLAQ 331
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
+ V G+E+ A+ DA RNA +N + N F +AE V+ K+
Sbjct: 332 KAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE 378
Score = 64 (27.6 bits), Expect = 5.4e-12, Sum P(4) = 5.4e-12
Identities = 26/111 (23%), Positives = 47/111 (42%)
Query: 352 REIGGL-PCKLEGILG--SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEP 408
+ IGGL + +LG +P V YRNK + +G + G + G +R+G +
Sbjct: 111 QRIGGLGDVPVHPVLGMKNPWV--YRNKAQVPIG-----EREGGLVAGFYRQGTHDIINM 163
Query: 409 VDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGK 459
C +E + ++ + +N +N G R + R G+ G+
Sbjct: 164 ESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMARYGQVTGE 214
Score = 43 (20.2 bits), Expect = 5.4e-12, Sum P(4) = 5.4e-12
Identities = 6/24 (25%), Positives = 16/24 (66%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKL 330
L H++Y QL+ K+ + +++++
Sbjct: 90 LQHLTYEGQLQAKEKQVRDVMQRI 113
Score = 37 (18.1 bits), Expect = 5.4e-12, Sum P(4) = 5.4e-12
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 754 IVDPPRGGLHPTVIKIL 770
+VDPPR G ++ +
Sbjct: 386 VVDPPRKGCDEALLNTI 402
>UNIPROTKB|O31503 [details] [associations]
symbol:rlmCD "23S rRNA (uracil-C(5))-methyltransferase
RlmCD" species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0031167 "rRNA methylation" evidence=IDA] [GO:0070041 "rRNA
(uridine-C5-)-methyltransferase activity" evidence=IDA]
InterPro:IPR001566 InterPro:IPR010280 Pfam:PF05958 PROSITE:PS01230
PROSITE:PS01231 GO:GO:0046872 GO:GO:0051539 GO:GO:0003723
EMBL:AL009126 GenomeReviews:AL009126_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 eggNOG:COG2265 GO:GO:0070041
TIGRFAMs:TIGR00479 InterPro:IPR002792 PROSITE:PS50926 Pfam:PF01938
PIR:E69793 RefSeq:NP_388555.1 ProteinModelPortal:O31503 SMR:O31503
EnsemblBacteria:EBBACT00000001048 GeneID:936060 KEGG:bsu:BSU06730
PATRIC:18972992 GenoList:BSU06730 HOGENOM:HOG000029867 KO:K03215
OMA:FFQVNPV ProtClustDB:CLSK872793 BioCyc:BSUB:BSU06730-MONOMER
Uniprot:O31503
Length = 459
Score = 192 (72.6 bits), Expect = 7.6e-12, Sum P(3) = 7.6e-12
Identities = 41/104 (39%), Positives = 60/104 (57%)
Query: 559 EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLT 618
E I+D I +++F IS +F+QVN + LY ++A+L + + D CG GTI L
Sbjct: 269 EEYIYDLIGDVKFAISARSFYQVNPEQTKVLYDKALEYAELQGEETVIDAYCGIGTISLF 328
Query: 619 LAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
LA + V G+E+ A+ DA RNAE+NG N F +AE V+
Sbjct: 329 LAKQAKKVYGVEIVPEAIEDAKRNAELNGNTNAEFAVGEAETVI 372
Score = 44 (20.5 bits), Expect = 7.6e-12, Sum P(3) = 7.6e-12
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKL 330
L HM+Y QL K+ + +L+++
Sbjct: 88 LQHMTYEGQLLFKQKQVKDVLERI 111
Score = 41 (19.5 bits), Expect = 7.6e-12, Sum P(3) = 7.6e-12
Identities = 7/29 (24%), Positives = 18/29 (62%)
Query: 754 IVDPPRGGLHPTVIKILRTHARLQRLLHI 782
+VDPPR G +++ + + +R++++
Sbjct: 386 VVDPPRKGCDEALLRTI-VEMKPKRVVYV 413
>UNIPROTKB|O58994 [details] [associations]
symbol:PH1259 "23S rRNA
(uracil(747)-C(5))-methyltransferase" species:70601 "Pyrococcus
horikoshii OT3" [GO:0031167 "rRNA methylation" evidence=ISS]
[GO:0070041 "rRNA (uridine-C5-)-methyltransferase activity"
evidence=ISS] InterPro:IPR001566 InterPro:IPR010280 Pfam:PF05958
PROSITE:PS01230 PROSITE:PS01231 GO:GO:0046872 GO:GO:0051539
GO:GO:0003723 EMBL:BA000001 GenomeReviews:BA000001_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG2265 HOGENOM:HOG000029870 OMA:GCLWQGL
ProtClustDB:CLSK253194 GO:GO:0070041 InterPro:IPR015985
Pfam:PF03848 TIGRFAMs:TIGR00479 PIR:G71070 RefSeq:NP_143152.1
ProteinModelPortal:O58994 EnsemblBacteria:EBPYRT00000001556
GeneID:1443583 KEGG:pho:PH1259 BioCyc:PHOR70601:GJWR-1256-MONOMER
Uniprot:O58994
Length = 412
Score = 141 (54.7 bits), Expect = 2.2e-11, Sum P(4) = 2.2e-11
Identities = 37/99 (37%), Positives = 53/99 (53%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I + + + + I P+ FFQ N+ A L + + G L D+ G GT+ L LA
Sbjct: 237 IREKVEGITYLIHPSVFFQTNSYALPLLLKSVEKFCE-GSKVL--DLYSGIGTLSLYLAK 293
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
R V G+E+N ++V A R+AEIN I N F+ KAED
Sbjct: 294 RGFEVTGVEVNGTSVEMAKRSAEINSI-NATFIQGKAED 331
Score = 92 (37.4 bits), Expect = 2.2e-11, Sum P(4) = 2.2e-11
Identities = 39/141 (27%), Positives = 65/141 (46%)
Query: 342 VSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREG 401
+ L E I K I G+ +++G SP + +RN F + + +GF +
Sbjct: 83 LKLKEEIFK--RITGIEAEIKG---SPRIWYFRNISNFIITVN-----GIGFKEFGMPKT 132
Query: 402 VTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPL 461
V + E CP SE KY ++FL++S+L WN G L VREG+ G+ +
Sbjct: 133 VVNIRE---CPIFSERTPKYLKALKDFLRESNLKPWNW--REGDVHYLQVREGKFTGEVM 187
Query: 462 DVENLEVNISEVNISEVMLIA 482
N+ ++ +N E ++ A
Sbjct: 188 --VNIIAHVP-LNYREALMEA 205
Score = 41 (19.5 bits), Expect = 2.2e-11, Sum P(4) = 2.2e-11
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 754 IVDPPRGGL 762
IVDPPR GL
Sbjct: 341 IVDPPRKGL 349
Score = 38 (18.4 bits), Expect = 2.2e-11, Sum P(4) = 2.2e-11
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 86 CSYFRKVGTCCHGSTCRYAHGEEELRIRPD 115
CS+F K G C RY E+L+++ +
Sbjct: 63 CSHFGKCGGCLWQGL-RY---REQLKLKEE 88
Score = 38 (18.4 bits), Expect = 4.3e-06, Sum P(4) = 4.3e-06
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 174 PRKWHSDNLKKFLAD-HGILYK 194
PR W+ N+ F+ +GI +K
Sbjct: 104 PRIWYFRNISNFIITVNGIGFK 125
>UNIPROTKB|Q9UZK1 [details] [associations]
symbol:PYRAB11450 "23S rRNA
(uracil(747)-C(5))-methyltransferase" species:272844 "Pyrococcus
abyssi GE5" [GO:0031167 "rRNA methylation" evidence=IDA]
[GO:0070041 "rRNA (uridine-C5-)-methyltransferase activity"
evidence=IDA] InterPro:IPR001566 InterPro:IPR010280 Pfam:PF05958
PROSITE:PS01230 PROSITE:PS01231 GO:GO:0046872 GO:GO:0051539
GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340 EMBL:AJ248286
EMBL:HE613800 PIR:C75094 RefSeq:NP_126826.1
ProteinModelPortal:Q9UZK1 EnsemblBacteria:EBPYRT00000002314
GeneID:1496508 GenomeReviews:AL096836_GR KEGG:pab:PAB0760
eggNOG:COG2265 HOGENOM:HOG000029870 OMA:GCLWQGL
ProtClustDB:CLSK253194 GO:GO:0070041 InterPro:IPR015985
Pfam:PF03848 TIGRFAMs:TIGR00479 Uniprot:Q9UZK1
Length = 410
Score = 131 (51.2 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 44/137 (32%), Positives = 68/137 (49%)
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSL 592
AD+ L K D +P+ +++ I +SI L + I P+ FFQ N+ A L
Sbjct: 207 ADSVYWSLKRDKRD-DPKGIPTLIKGNEFIRESIEGLVYLIHPSTFFQTNSYALPILLKA 265
Query: 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCR 652
+A+ G L D+ G GT L LA + V G+E+N +V A ++AE+N + +
Sbjct: 266 VESFAE-GSKVL--DLYSGVGTFSLYLAKKGFEVTGVEVNEESVRVAKKSAEVNSL-DVS 321
Query: 653 FVCAKAEDVMGSLLKDY 669
F+ +AED LK Y
Sbjct: 322 FIPGRAEDAK---LKGY 335
Score = 87 (35.7 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 32/96 (33%), Positives = 45/96 (46%)
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
I GSP + +RN F V + +GF V +V+E CP SE Y
Sbjct: 98 IKGSPRIWFFRNISNFIVTVN-----GIGFKEFGMPRTVVSVDE---CPVFSERTKLYIR 149
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGK 459
+ FL+++ L WN +KN G L VREG+ G+
Sbjct: 150 AMKRFLRETGLNPWN-WKN-GDVHYLQVREGKFTGE 183
Score = 41 (19.5 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 754 IVDPPRGGL 762
IVDPPR GL
Sbjct: 339 IVDPPRKGL 347
>TIGR_CMR|BA_0426 [details] [associations]
symbol:BA_0426 "RNA methyltransferase, TrmA family"
species:198094 "Bacillus anthracis str. Ames" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0008175 "tRNA methyltransferase
activity" evidence=ISS] InterPro:IPR001566 InterPro:IPR010280
Pfam:PF05958 PROSITE:PS01230 PROSITE:PS01231 GO:GO:0046872
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0051539
GO:GO:0003723 GO:GO:0006396 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 eggNOG:COG2265 TIGRFAMs:TIGR00479 OMA:YPAQLRF
GO:GO:0008173 GO:GO:0001510 KO:K00599 InterPro:IPR002792
PROSITE:PS50926 Pfam:PF01938 HOGENOM:HOG000029867
RefSeq:NP_842968.1 RefSeq:YP_017052.1 RefSeq:YP_026694.1
ProteinModelPortal:Q81Z48 DNASU:1087369
EnsemblBacteria:EBBACT00000008947 EnsemblBacteria:EBBACT00000018008
EnsemblBacteria:EBBACT00000024397 GeneID:1087369 GeneID:2819883
GeneID:2849334 KEGG:ban:BA_0426 KEGG:bar:GBAA_0426 KEGG:bat:BAS0414
ProtClustDB:CLSK886880 BioCyc:BANT260799:GJAJ-456-MONOMER
BioCyc:BANT261594:GJ7F-464-MONOMER Uniprot:Q81Z48
Length = 459
Score = 157 (60.3 bits), Expect = 4.0e-09, Sum P(3) = 4.0e-09
Identities = 37/111 (33%), Positives = 60/111 (54%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I +++ +L F +S AFFQ+N LY+ A L + + D CG GTIGL LA+
Sbjct: 274 IQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTIGLWLAN 333
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
V G+++ A++DA +NA+ +G N ++ KAE + +K+ P
Sbjct: 334 DAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKEGWRP 384
Score = 55 (24.4 bits), Expect = 4.0e-09, Sum P(3) = 4.0e-09
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNA--RKACPN-GVSLPEWIMKSR 352
L H+ Y QL K++ + Q +K +N+ K P G+ P W +++
Sbjct: 91 LQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENP-WHYRNK 138
Score = 50 (22.7 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 22/100 (22%), Positives = 38/100 (38%)
Query: 360 KLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIAC 419
K+ LG YRNK + VG K G N + + + +E A
Sbjct: 122 KIRPTLGMENPWHYRNKSQLQVGRK-DEKVITGLYKQNSHQLIDIAHCMIQHKATNE-AT 179
Query: 420 KYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGK 459
K + + L++ ++ ++N K G R + R G+
Sbjct: 180 K---VVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTGE 216
Score = 42 (19.8 bits), Expect = 4.0e-09, Sum P(3) = 4.0e-09
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 752 VAIVDPPRGG----LHPTVIKI 769
V +VDPPR G L T++K+
Sbjct: 386 VIVVDPPRTGCDDKLLETILKV 407
>UNIPROTKB|Q8U2K7 [details] [associations]
symbol:PF0827 "23S rRNA
(uracil(747)-C(5))-methyltransferase" species:186497 "Pyrococcus
furiosus DSM 3638" [GO:0031167 "rRNA methylation" evidence=ISS]
[GO:0070041 "rRNA (uridine-C5-)-methyltransferase activity"
evidence=ISS] InterPro:IPR001566 InterPro:IPR010280 Pfam:PF05958
PROSITE:PS01230 PROSITE:PS01231 GO:GO:0046872 GO:GO:0051539
GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG2265
HOGENOM:HOG000029870 ProtClustDB:CLSK253194 GO:GO:0070041
TIGRFAMs:TIGR00479 EMBL:AE009950 RefSeq:NP_578556.1
ProteinModelPortal:Q8U2K7 PRIDE:Q8U2K7
EnsemblBacteria:EBPYRT00000005959 GeneID:1468683
GenomeReviews:AE009950_GR KEGG:pfu:PF0827 OMA:VECRILE
Uniprot:Q8U2K7
Length = 409
Score = 117 (46.2 bits), Expect = 2.2e-08, Sum P(3) = 2.2e-08
Identities = 35/112 (31%), Positives = 55/112 (49%)
Query: 549 GEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDV 608
GEP + + I + I +++ + P FFQ N+ A L + D G L D+
Sbjct: 222 GEPIHLGE--KEFISEKIFGIKYLLRPGIFFQTNSYALPLLLKAVEGFLD-GSKVL--DL 276
Query: 609 CCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
G GT L L + V+G+E+N +AV A +AE+N + N F +AE+
Sbjct: 277 YSGIGTFSLYLTKKGFNVVGVEINKTAVEVAKLSAELNSL-NVEFKAKRAEE 327
Score = 93 (37.8 bits), Expect = 2.2e-08, Sum P(3) = 2.2e-08
Identities = 36/108 (33%), Positives = 49/108 (45%)
Query: 352 REIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDC 411
R I G+ + ILGSP + +RN F V + G L F T V+ +C
Sbjct: 89 RRITGIEAE---ILGSPRIWEFRNISNFIVSVN-------GIGLKEFARPKTVVDLK-EC 137
Query: 412 PNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGK 459
P S Y +EFL++S L WN +K G L VREG+ G+
Sbjct: 138 PVFSNRTPLYIRAMKEFLRESGLKPWN-WKE-GDVHYLQVREGKFTGE 183
Score = 38 (18.4 bits), Expect = 2.2e-08, Sum P(3) = 2.2e-08
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 754 IVDPPRGGL 762
I+DPPR GL
Sbjct: 337 ILDPPRKGL 345
>TIGR_CMR|DET_1065 [details] [associations]
symbol:DET_1065 "RNA methyltransferase, TrmA family"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0008173 "RNA methyltransferase
activity" evidence=ISS] InterPro:IPR010280 Pfam:PF05958
PROSITE:PS01230 PROSITE:PS01231 GO:GO:0006396 EMBL:CP000027
GenomeReviews:CP000027_GR Gene3D:2.40.50.140 InterPro:IPR012340
eggNOG:COG2265 HOGENOM:HOG000029870 GO:GO:0008173 GO:GO:0001510
KO:K00599 RefSeq:YP_181780.1 ProteinModelPortal:Q3Z7L9
STRING:Q3Z7L9 GeneID:3229662 KEGG:det:DET1065 PATRIC:21609175
OMA:CANSRIV ProtClustDB:CLSK837125
BioCyc:DETH243164:GJNF-1066-MONOMER Uniprot:Q3Z7L9
Length = 395
Score = 153 (58.9 bits), Expect = 3.0e-08, Sum P(3) = 3.0e-08
Identities = 39/100 (39%), Positives = 51/100 (51%)
Query: 563 HDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR 622
HD + FCIS +FFQVN AEK+ L +L L D G GT + L+
Sbjct: 212 HDLLLGHDFCISAASFFQVNNPQAEKMAGLIKKHLNLSGGETLVDAYAGVGTFAVLLSPD 271
Query: 623 VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
VI IE +A+A+ DA N I GI N + +K EDV+
Sbjct: 272 CNRVIAIEESAAAIKDARLN--IAGIDNIELIQSKTEDVI 309
Score = 49 (22.3 bits), Expect = 3.0e-08, Sum P(3) = 3.0e-08
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 754 IVDPPRGGLHPTVI 767
I+DP R G HP+V+
Sbjct: 320 ILDPSRSGAHPSVL 333
Score = 40 (19.1 bits), Expect = 3.0e-08, Sum P(3) = 3.0e-08
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 339 PNGVSLPEWIMKSR-EIGGLPCK-LEGILGSPLVNGYRNKCEFSV 381
P+ + L I+ + E GL + ++ S GYRN FS+
Sbjct: 91 PHQLKLKHQIILAEFEKAGLDSTYISEVIPSAAEYGYRNHARFSI 135
>UNIPROTKB|P75817 [details] [associations]
symbol:rlmC "23S rRNA m5U747 methyltransferase"
species:83333 "Escherichia coli K-12" [GO:0070475 "rRNA base
methylation" evidence=IMP] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0016436 "rRNA (uridine) methyltransferase activity"
evidence=IEA;IMP] HAMAP:MF_01012 InterPro:IPR010280
InterPro:IPR011825 Pfam:PF05958 PROSITE:PS01230 PROSITE:PS01231
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0051539 eggNOG:COG2265
GO:GO:0070475 PIR:C64824 RefSeq:NP_415380.1 RefSeq:YP_489132.1
ProteinModelPortal:P75817 SMR:P75817 IntAct:P75817 PRIDE:P75817
EnsemblBacteria:EBESCT00000003640 EnsemblBacteria:EBESCT00000017223
GeneID:12930993 GeneID:947260 KEGG:ecj:Y75_p0832 KEGG:eco:b0859
PATRIC:32116923 EchoBASE:EB3201 EcoGene:EG13427
HOGENOM:HOG000218547 KO:K03212 OMA:QPQHAAI ProtClustDB:PRK03522
BioCyc:EcoCyc:G6449-MONOMER BioCyc:ECOL316407:JW0843-MONOMER
BioCyc:MetaCyc:G6449-MONOMER Genevestigator:P75817 GO:GO:0016436
TIGRFAMs:TIGR02085 Uniprot:P75817
Length = 375
Score = 118 (46.6 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 31/106 (29%), Positives = 53/106 (50%)
Query: 548 DGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFD 607
+GE E +A + + +++ I P +FFQ N A +LY+ DW P ++D
Sbjct: 181 EGETEIYLTEQQA-LAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWD 239
Query: 608 VCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRF 653
+ CG G GL A + GIE+ + A++ A ++A G+ +F
Sbjct: 240 LFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQF 285
Score = 74 (31.1 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 24/88 (27%), Positives = 46/88 (52%)
Query: 372 GYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV-SEIACKYASIFQEFLQ 430
G+RNK + V S++ KP +G + R+G E+ DCP + A +A++ + F+
Sbjct: 54 GFRNKAKMVVSGSVE-KPLLGML---HRDGTP--EDLCDCPLYPASFAPVFAAL-KPFIA 106
Query: 431 QSDLPVWNRFKNSGFWRQLTVREGRSPG 458
++ L +N + G + + + E +S G
Sbjct: 107 RAGLTPYNVARKRGELKYILLTESQSDG 134
Score = 37 (18.1 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 752 VAIVDPPRGGLHPTVIKILRTHA 774
+ +V+PPR G+ + L T A
Sbjct: 303 LVLVNPPRRGIGKPLCDYLSTMA 325
>UNIPROTKB|P55135 [details] [associations]
symbol:rlmD "23S rRNA m5U1939 methyltransferase"
species:83333 "Escherichia coli K-12" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0070475 "rRNA base methylation" evidence=IDA]
[GO:0070041 "rRNA (uridine-C5-)-methyltransferase activity"
evidence=IDA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA;IDA] [GO:0046872 "metal ion binding" evidence=IEA]
HAMAP:MF_01010 InterPro:IPR001566 InterPro:IPR010280 Pfam:PF05958
PROSITE:PS01230 PROSITE:PS01231 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0046872
GO:GO:0051539 GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 eggNOG:COG2265 GO:GO:0070041 TIGRFAMs:TIGR00479
EMBL:U29580 InterPro:IPR002792 PROSITE:PS50926 Pfam:PF01938
GO:GO:0070475 KO:K03215 HOGENOM:HOG000029868 PIR:E65060
RefSeq:NP_417265.1 RefSeq:YP_490993.1 PDB:1UWV PDB:2BH2 PDBsum:1UWV
PDBsum:2BH2 ProteinModelPortal:P55135 SMR:P55135 DIP:DIP-12119N
IntAct:P55135 PRIDE:P55135 EnsemblBacteria:EBESCT00000000123
EnsemblBacteria:EBESCT00000015733 GeneID:12933291 GeneID:947243
KEGG:ecj:Y75_p2722 KEGG:eco:b2785 PATRIC:32120986 EchoBASE:EB1228
EcoGene:EG11247 OMA:HNGAGIA ProtClustDB:PRK13168
BioCyc:EcoCyc:EG11247-MONOMER BioCyc:ECOL316407:JW2756-MONOMER
BioCyc:MetaCyc:EG11247-MONOMER EvolutionaryTrace:P55135
Genevestigator:P55135 Uniprot:P55135
Length = 433
Score = 150 (57.9 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 32/98 (32%), Positives = 51/98 (52%)
Query: 563 HDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR 622
+DS + LR SP F QVN +K+ + +W D+ P+ + D+ CG G L LA +
Sbjct: 249 YDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ 307
Query: 623 VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
V+G+E + V +NA +NG++N F E+
Sbjct: 308 AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEE 345
Score = 38 (18.4 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 15 INGQDSTSHNEPLQNADDEQIQPSIPQSTDDVTTTAAEKR 54
+N DS N I +PQ +VT T +K+
Sbjct: 21 VNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQ 60
Score = 37 (18.1 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 23 HNEPLQNADDEQIQ 36
H PL +AD E+++
Sbjct: 207 HTAPLSSADREKLE 220
>TIGR_CMR|SO_0980 [details] [associations]
symbol:SO_0980 "RNA methyltransferase, TrmA family"
species:211586 "Shewanella oneidensis MR-1" [GO:0001510 "RNA
methylation" evidence=ISS] [GO:0008173 "RNA methyltransferase
activity" evidence=ISS] HAMAP:MF_01012 InterPro:IPR001566
InterPro:IPR010280 InterPro:IPR011825 Pfam:PF05958 PROSITE:PS01230
PROSITE:PS01231 GO:GO:0046872 GO:GO:0051539 GO:GO:0003723
EMBL:AE014299 GenomeReviews:AE014299_GR eggNOG:COG2265
TIGRFAMs:TIGR00479 GO:GO:0001510 HOGENOM:HOG000218547 KO:K03212
OMA:QPQHAAI ProtClustDB:PRK03522 GO:GO:0016436 TIGRFAMs:TIGR02085
RefSeq:NP_716609.2 ProteinModelPortal:Q8EI67 GeneID:1168823
KEGG:son:SO_0980 PATRIC:23521611 Uniprot:Q8EI67
Length = 386
Score = 146 (56.5 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 35/113 (30%), Positives = 60/113 (53%)
Query: 550 EPEESNDVVE-ARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWA-DLGPDTLLFD 607
E +E + E R+ + +++ I P +FFQ N A KLY +W + P +L +D
Sbjct: 188 EGDEEIFLTENTRLEERFNDVPLFIRPKSFFQTNPHVAAKLYQTAREWVGEFAPKSL-WD 246
Query: 608 VCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
+ CG G GL A + + GIE+ A A++ A +A++ G+ N +F+ + D
Sbjct: 247 LFCGVGGFGLHCASKDIPLTGIEIEAEAIACAKMSAQMMGLDNVQFMALDSTD 299
Score = 38 (18.4 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 736 DCTSEGNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHA 774
D T A K + IV+PPR G+ ++ L A
Sbjct: 296 DSTDFAKGDAAATKPDLIIVNPPRRGIGESLCDALSEFA 334
>UNIPROTKB|Q9KL20 [details] [associations]
symbol:rlmC "23S rRNA (uracil(747)-C(5))-methyltransferase
RlmC" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0009451 "RNA modification" evidence=ISS] HAMAP:MF_01012
InterPro:IPR010280 InterPro:IPR011825 Pfam:PF05958 PROSITE:PS01230
PROSITE:PS01231 GO:GO:0046872 GO:GO:0051539 EMBL:AE003853
GenomeReviews:AE003853_GR eggNOG:COG2265 GO:GO:0001510 KO:K03212
OMA:QPQHAAI ProtClustDB:PRK03522 GO:GO:0016436 TIGRFAMs:TIGR02085
PIR:A82399 RefSeq:NP_233314.1 ProteinModelPortal:Q9KL20
DNASU:2612926 GeneID:2612926 KEGG:vch:VCA0929 PATRIC:20086390
Uniprot:Q9KL20
Length = 375
Score = 142 (55.0 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 35/106 (33%), Positives = 56/106 (52%)
Query: 550 EPEESNDVVEAR-IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWA-DLGPDTLLFD 607
E EE + E + + + +++ I P +FFQ N AE+LY+ W ++ P T ++D
Sbjct: 181 EGEEEIFLTETQSLLEHFNDVPMVIRPKSFFQTNPKVAEQLYATARTWVREIAP-TQMWD 239
Query: 608 VCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRF 653
+ CG G L A V GIE+ A++ A R+A++ GI N F
Sbjct: 240 LFCGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSF 285
Score = 41 (19.5 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 8/51 (15%), Positives = 24/51 (47%)
Query: 409 VDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGK 459
V CP + + + + +++ + +P +N+ K G + + + + G+
Sbjct: 85 VTCPLYPQPMQELLAYLENWIRIAGIPPYNKLKKKGELKFILLTRSENSGQ 135
>TIGR_CMR|VC_A0929 [details] [associations]
symbol:VC_A0929 "TrmA family RNA methyltransferase,
putative" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0009451 "RNA modification" evidence=ISS] HAMAP:MF_01012
InterPro:IPR010280 InterPro:IPR011825 Pfam:PF05958 PROSITE:PS01230
PROSITE:PS01231 GO:GO:0046872 GO:GO:0051539 EMBL:AE003853
GenomeReviews:AE003853_GR eggNOG:COG2265 GO:GO:0001510 KO:K03212
OMA:QPQHAAI ProtClustDB:PRK03522 GO:GO:0016436 TIGRFAMs:TIGR02085
PIR:A82399 RefSeq:NP_233314.1 ProteinModelPortal:Q9KL20
DNASU:2612926 GeneID:2612926 KEGG:vch:VCA0929 PATRIC:20086390
Uniprot:Q9KL20
Length = 375
Score = 142 (55.0 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 35/106 (33%), Positives = 56/106 (52%)
Query: 550 EPEESNDVVEAR-IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWA-DLGPDTLLFD 607
E EE + E + + + +++ I P +FFQ N AE+LY+ W ++ P T ++D
Sbjct: 181 EGEEEIFLTETQSLLEHFNDVPMVIRPKSFFQTNPKVAEQLYATARTWVREIAP-TQMWD 239
Query: 608 VCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRF 653
+ CG G L A V GIE+ A++ A R+A++ GI N F
Sbjct: 240 LFCGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSF 285
Score = 41 (19.5 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 8/51 (15%), Positives = 24/51 (47%)
Query: 409 VDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGK 459
V CP + + + + +++ + +P +N+ K G + + + + G+
Sbjct: 85 VTCPLYPQPMQELLAYLENWIRIAGIPPYNKLKKKGELKFILLTRSENSGQ 135
>SGD|S000001764 [details] [associations]
symbol:TRM2 "tRNA methyltransferase" species:4932
"Saccharomyces cerevisiae" [GO:0030697
"S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase
activity" evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0008168 "methyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0032259 "methylation"
evidence=IEA] [GO:0001510 "RNA methylation" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0008173 "RNA
methyltransferase activity" evidence=IEA] [GO:0000014
"single-stranded DNA specific endodeoxyribonuclease activity"
evidence=IDA] [GO:0051908 "double-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IDA] [GO:0006281 "DNA
repair" evidence=IGI;IMP] [GO:0006302 "double-strand break repair"
evidence=IGI;IMP] [GO:0030696 "tRNA (m5U54) methyltransferase
activity" evidence=IMP;IDA] [GO:0006400 "tRNA modification"
evidence=IDA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR010280 InterPro:IPR025795 Pfam:PF05958 PROSITE:PS01230
PROSITE:PS01231 SGD:S000001764 EMBL:BK006944 GO:GO:0006302
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG2265 GO:GO:0030697 InterPro:IPR002792 PROSITE:PS50926
Pfam:PF01938 GO:GO:0000014 GO:GO:0051908 EMBL:Z25734 EMBL:Z14126
GeneTree:ENSGT00530000063723 KO:K15331 EMBL:AJ250970 EMBL:Z28281
EMBL:AY260897 PIR:S37744 RefSeq:NP_012982.2
ProteinModelPortal:P33753 SMR:P33753 MINT:MINT-2781813
STRING:P33753 PaxDb:P33753 PeptideAtlas:P33753 EnsemblFungi:YKR056W
GeneID:853930 KEGG:sce:YKR056W CYGD:YKR056w HOGENOM:HOG000029869
OMA:YGYRTKL OrthoDB:EOG4HHS9R NextBio:975297 Genevestigator:P33753
GermOnline:YKR056W GO:GO:0030696 Uniprot:P33753
Length = 639
Score = 139 (54.0 bits), Expect = 8.1e-06, Sum P(4) = 8.1e-06
Identities = 26/61 (42%), Positives = 40/61 (65%)
Query: 605 LFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664
L D CG+G + + V VIG+E++A +VS A +NA+ NG++NCRF+ KAE + S
Sbjct: 492 LVDAYCGSGLFSICSSKGVDKVIGVEISADSVSFAEKNAKANGVENCRFIVGKAEKLFES 551
Query: 665 L 665
+
Sbjct: 552 I 552
Score = 51 (23.0 bits), Expect = 8.1e-06, Sum P(4) = 8.1e-06
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 743 SLAQPFKNVVAIVDPPRGGLHPTVIKILRTH 773
S+ P +N I+DPPR G +K L +
Sbjct: 551 SIDTPSENTSVILDPPRKGCDELFLKQLAAY 581
Score = 39 (18.8 bits), Expect = 8.1e-06, Sum P(4) = 8.1e-06
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 243 DKNIKSPMTLSGNAK 257
+K + SP+T SGN +
Sbjct: 88 NKRLSSPLTDSGNRR 102
Score = 38 (18.4 bits), Expect = 8.1e-06, Sum P(4) = 8.1e-06
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 549 GEPEESNDVVEARIHDSISNLRFCISPT 576
G P+ D ++ H SI ++ C+ T
Sbjct: 332 GRPQWRKDTLDIGGHGSILDIDECVLAT 359
>UNIPROTKB|Q9KPC1 [details] [associations]
symbol:rlmD "23S rRNA (uracil(1939)-C(5))-methyltransferase
RlmD" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0008649 "rRNA
methyltransferase activity" evidence=ISS] HAMAP:MF_01010
InterPro:IPR001566 InterPro:IPR010280 Pfam:PF05958 PROSITE:PS01230
PROSITE:PS01231 GO:GO:0046872 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0051539 GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG2265 TIGRFAMs:TIGR00479 InterPro:IPR002792
PROSITE:PS50926 Pfam:PF01938 GO:GO:0008649 KO:K03215 OMA:HNGAGIA
ProtClustDB:PRK13168 EMBL:AF175295 PIR:A82075 RefSeq:NP_232081.1
ProteinModelPortal:Q9KPC1 DNASU:2612994 GeneID:2612994
KEGG:vch:VC2452 PATRIC:20083925 Uniprot:Q9KPC1
Length = 440
Score = 134 (52.2 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 44/147 (29%), Positives = 67/147 (45%)
Query: 518 LTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTA 577
L AL+ QD Q +++ A + L L + +A GE + EA + + R P+
Sbjct: 215 LGALIEQDQQRLTDFASQNQ-LTLYLMLEA-GELQHVQG--EAPYCEETGS-RLSFLPSH 269
Query: 578 FFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVS 637
F QVN + + +W ++ P + D+ CG G L LA + V+G+E V
Sbjct: 270 FIQVNRAVNQHMVVQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAVVGVEGVDEMVQ 329
Query: 638 DAHRNAEINGIKNCRFVCAKAEDVMGS 664
A NA++N I N F A E M S
Sbjct: 330 HATHNAKLNQINNVAFYQANLEQDMTS 356
Score = 46 (21.3 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKK 329
L H+ + Q+ HK+ +++Q++ K
Sbjct: 93 LQHLDRAGQIHHKQQALSQLMVK 115
>TIGR_CMR|VC_2452 [details] [associations]
symbol:VC_2452 "23S rRNA (uracil-5-)-methyltransferase
RumA" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0008649 "rRNA
methyltransferase activity" evidence=ISS] HAMAP:MF_01010
InterPro:IPR001566 InterPro:IPR010280 Pfam:PF05958 PROSITE:PS01230
PROSITE:PS01231 GO:GO:0046872 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0051539 GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG2265 TIGRFAMs:TIGR00479 InterPro:IPR002792
PROSITE:PS50926 Pfam:PF01938 GO:GO:0008649 KO:K03215 OMA:HNGAGIA
ProtClustDB:PRK13168 EMBL:AF175295 PIR:A82075 RefSeq:NP_232081.1
ProteinModelPortal:Q9KPC1 DNASU:2612994 GeneID:2612994
KEGG:vch:VC2452 PATRIC:20083925 Uniprot:Q9KPC1
Length = 440
Score = 134 (52.2 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 44/147 (29%), Positives = 67/147 (45%)
Query: 518 LTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTA 577
L AL+ QD Q +++ A + L L + +A GE + EA + + R P+
Sbjct: 215 LGALIEQDQQRLTDFASQNQ-LTLYLMLEA-GELQHVQG--EAPYCEETGS-RLSFLPSH 269
Query: 578 FFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVS 637
F QVN + + +W ++ P + D+ CG G L LA + V+G+E V
Sbjct: 270 FIQVNRAVNQHMVVQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAVVGVEGVDEMVQ 329
Query: 638 DAHRNAEINGIKNCRFVCAKAEDVMGS 664
A NA++N I N F A E M S
Sbjct: 330 HATHNAKLNQINNVAFYQANLEQDMTS 356
Score = 46 (21.3 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKK 329
L H+ + Q+ HK+ +++Q++ K
Sbjct: 93 LQHLDRAGQIHHKQQALSQLMVK 115
>CGD|CAL0004099 [details] [associations]
symbol:TRM2 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0006400
"tRNA modification" evidence=IEA] [GO:0051908 "double-stranded DNA
specific 5'-3' exodeoxyribonuclease activity" evidence=IEA]
[GO:0030696 "tRNA (m5U54) methyltransferase activity" evidence=IEA]
[GO:0000014 "single-stranded DNA specific endodeoxyribonuclease
activity" evidence=IEA] InterPro:IPR010280 InterPro:IPR025795
Pfam:PF05958 PROSITE:PS01230 PROSITE:PS01231 PROSITE:PS51622
CGD:CAL0004099 Gene3D:2.40.50.140 InterPro:IPR012340
EMBL:AACQ01000045 EMBL:AACQ01000042 SUPFAM:SSF50249 eggNOG:COG2265
GO:GO:0030697 GO:GO:0001510 InterPro:IPR002792 PROSITE:PS50926
Pfam:PF01938 KO:K15331 RefSeq:XP_718150.1 RefSeq:XP_718419.1
ProteinModelPortal:Q5A908 STRING:Q5A908 GeneID:3639959
GeneID:3640235 KEGG:cal:CaO19.10837 KEGG:cal:CaO19.3327
Uniprot:Q5A908
Length = 551
Score = 143 (55.4 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 35/106 (33%), Positives = 51/106 (48%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPD--TLLFDVCCGTGTIGLTL 619
+ + I+ F S FFQ N + L D L D CG+G +T
Sbjct: 356 VQEYINGYIFEFSAGEFFQNNNSILPIVIDYVRSNLSLSEDQPNYLVDAYCGSGLFSITC 415
Query: 620 AHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
+ V VIG+E++A ++ A RNAE N IKN F+ KAE++ S+
Sbjct: 416 SSNVSKVIGVEISADSIRFAKRNAEKNNIKNANFIVGKAEEIFASI 461
Score = 39 (18.8 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 743 SLAQPFKNVVAIVDPPRGG 761
S+ P I+DPPR G
Sbjct: 460 SIDTPNNQTSVILDPPRKG 478
>TIGR_CMR|SO_3456 [details] [associations]
symbol:SO_3456 "RNA methyltransferase, TrmA family"
species:211586 "Shewanella oneidensis MR-1" [GO:0001510 "RNA
methylation" evidence=ISS] [GO:0008173 "RNA methyltransferase
activity" evidence=ISS] HAMAP:MF_01010 InterPro:IPR001566
InterPro:IPR010280 PROSITE:PS01230 PROSITE:PS01231 GO:GO:0046872
GO:GO:0051539 GO:GO:0003723 EMBL:AE014299 GenomeReviews:AE014299_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR025714 Pfam:PF13847 eggNOG:COG2265 TIGRFAMs:TIGR00479
GO:GO:0006364 GO:GO:0008173 GO:GO:0001510 InterPro:IPR002792
PROSITE:PS50926 Pfam:PF01938 KO:K03215 HOGENOM:HOG000029868
ProtClustDB:PRK13168 RefSeq:NP_719005.1 ProteinModelPortal:Q8EBQ3
GeneID:1171132 KEGG:son:SO_3456 PATRIC:23526608 OMA:YSPNRRT
Uniprot:Q8EBQ3
Length = 449
Score = 120 (47.3 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 36/107 (33%), Positives = 48/107 (44%)
Query: 574 SPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNA 633
+P F QVN + + + DW P + D+ CG G L LA VIG+E
Sbjct: 276 TPGNFVQVNAQINKAMVAQALDWLAPQPGERILDLFCGMGNFSLPLARMGADVIGVEGVP 335
Query: 634 SAVSDAHRNAEINGIKNCRF----VCA--KAEDVMGSLLKDYLNPLR 674
VS A NA NG+ N F + A +E MG + K L+P R
Sbjct: 336 EMVSQARENAVANGLSNLTFYHGDLSADLSSEPWMGKIDKLLLDPAR 382
Score = 50 (22.7 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSR 352
L HMS + Q EHK ++ ++ K P +S W + R
Sbjct: 94 LQHMSLTAQREHKSAALVDIMAKFAGAEGSLAP-ALSGEGWHYRRR 138
>POMBASE|SPAC4G8.07c [details] [associations]
symbol:SPAC4G8.07c "tRNA (m5U54) methyltransferase Trm2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005634
"nucleus" evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0030488 "tRNA methylation" evidence=ISS] [GO:0030696 "tRNA
(m5U54) methyltransferase activity" evidence=ISS] [GO:0030697
"S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR010280 InterPro:IPR025795 Pfam:PF05958
PROSITE:PS01230 PROSITE:PS01231 PomBase:SPAC4G8.07c GO:GO:0005739
GO:GO:0005634 EMBL:CU329670 GO:GO:0046872 GO:GO:0051539
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG2265 GO:GO:0030697 InterPro:IPR002792 PROSITE:PS50926
Pfam:PF01938 OMA:HNGAGIA KO:K15331 HOGENOM:HOG000029869
OrthoDB:EOG4HHS9R GO:GO:0030696 PIR:T38852 RefSeq:NP_593067.1
ProteinModelPortal:Q09833 STRING:Q09833 EnsemblFungi:SPAC4G8.07c.1
GeneID:2543535 KEGG:spo:SPAC4G8.07c NextBio:20804544 Uniprot:Q09833
Length = 527
Score = 116 (45.9 bits), Expect = 0.00032, Sum P(4) = 0.00032
Identities = 39/152 (25%), Positives = 63/152 (41%)
Query: 522 VIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQV 581
+I+D Q +N A + + DG+ D + + + +L F AFFQ
Sbjct: 290 IIEDVQSRANTFKRGATILMRDSATEDGKHCVITDH-KMIVREQFGDLSFTFPAGAFFQN 348
Query: 582 NTLAAEKLYSLGGDWADLGP--------DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNA 633
N EK S + L P D CG+G + + VIG+E++A
Sbjct: 349 NNSILEKFTSYVREQL-LNPFGRKEHQRPKYFVDAYCGSGLFSVACSKGFLSVIGVEISA 407
Query: 634 SAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
+V A NA+ N + N F+ +AE + S+
Sbjct: 408 DSVRYAEENAKRNNVSNATFIVGQAEKIFSSI 439
Score = 51 (23.0 bits), Expect = 0.00032, Sum P(4) = 0.00032
Identities = 20/73 (27%), Positives = 36/73 (49%)
Query: 357 LPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFRE-GVTAVEEPVDCPNVS 415
LP ++ +GSPL YR K + + + T G ++ F+E G V + +CP +
Sbjct: 224 LPA-IKDTVGSPLQYNYRTK--ITPHFDVPKGGTKGPLIIGFQEKGRRRVMDIEECPIAT 280
Query: 416 E-IACKYASIFQE 427
+ I +Y I ++
Sbjct: 281 KTINEEYPKIIED 293
Score = 44 (20.5 bits), Expect = 0.00032, Sum P(4) = 0.00032
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 742 NSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
+S+ P ++DPPR G + + L ++ R+++I
Sbjct: 437 SSIETPPNETAMVIDPPRKGCDQSFLNQLLEYSPY-RIVYI 476
Score = 37 (18.1 bits), Expect = 0.00032, Sum P(4) = 0.00032
Identities = 6/10 (60%), Positives = 6/10 (60%)
Query: 86 CSYFRKVGTC 95
C YF K G C
Sbjct: 182 CPYFAKCGGC 191
Score = 37 (18.1 bits), Expect = 0.00032, Sum P(4) = 0.00032
Identities = 37/143 (25%), Positives = 48/143 (33%)
Query: 169 CLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIG 228
CL +L S + FL IL SA+ K F+ S K A +E IS
Sbjct: 5 CLKYLTNGLRSKQMINFLCIQNIL--SARTLKICRFRFLPTPSHPTHKMA-QETRAIS-- 59
Query: 229 NKTLKVANVVPRSFDKN-IKSPMT--LSGNAKQAS-ESAVPGE-LAEAHASSXXXXXXXX 283
+ AN R K K P+ SG+ E+ + LA
Sbjct: 60 -SISEAANKRARKLSKRRAKKPVEEGSSGHVLLLEIENLIEKPVLANVPFERFQEIEVKI 118
Query: 284 XXXXLAGDGSGLKVKSARDVVTP 306
+GDG GL VV P
Sbjct: 119 SYLSSSGDGIGLVCNDQYAVVVP 141
>TIGR_CMR|SO_0206 [details] [associations]
symbol:SO_0206 "tRNA (uracil-5-)-methyltransferase"
species:211586 "Shewanella oneidensis MR-1" [GO:0006400 "tRNA
modification" evidence=ISS] HAMAP:MF_01011 InterPro:IPR010280
InterPro:IPR011869 Pfam:PF05958 PROSITE:PS01230 PROSITE:PS01231
EMBL:AE014299 GenomeReviews:AE014299_GR eggNOG:COG2265
GO:GO:0030697 GO:GO:0001510 HOGENOM:HOG000218626 KO:K00557
ProtClustDB:PRK05031 TIGRFAMs:TIGR02143 RefSeq:NP_715847.1
ProteinModelPortal:Q8CX51 SMR:Q8CX51 GeneID:1168091
KEGG:son:SO_0206 PATRIC:23520087 OMA:YNIEANG Uniprot:Q8CX51
Length = 366
Score = 104 (41.7 bits), Expect = 0.00091, Sum P(2) = 0.00090
Identities = 31/112 (27%), Positives = 51/112 (45%)
Query: 557 VVEA-RIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
VVE+ +++D + + + +F Q N A K+ D LL ++ CG G
Sbjct: 167 VVESLQVNDKVFHYKQI--ENSFTQPNAKVAIKMLEWAIDVTQNSQGDLL-ELYCGNGNF 223
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLK 667
+ LA V+ E+ +V A N EINGI N + + AE+ ++ K
Sbjct: 224 SIALAQNFNRVLATELAKPSVDAAQYNIEINGIDNLQIIRMSAEEFSDAMAK 275
Score = 58 (25.5 bits), Expect = 0.00091, Sum P(2) = 0.00090
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 740 EGNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARL 776
EG L N + VDPPR G+ P + +++ + R+
Sbjct: 283 EGIDLDSYLCNTI-FVDPPRAGIDPATLDLVQGYERI 318
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.131 0.382 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 783 719 0.00085 121 3 11 23 0.46 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 47
No. of states in DFA: 623 (66 KB)
Total size of DFA: 371 KB (2183 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 64.86u 0.12s 64.98t Elapsed: 00:00:03
Total cpu time: 64.86u 0.12s 64.98t Elapsed: 00:00:03
Start: Fri May 10 12:20:32 2013 End: Fri May 10 12:20:35 2013