BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003969
(783 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359478697|ref|XP_002282314.2| PREDICTED: zinc finger CCCH domain-containing protein 24-like
[Vitis vinifera]
Length = 843
Score = 974 bits (2519), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/794 (64%), Positives = 598/794 (75%), Gaps = 42/794 (5%)
Query: 1 MASFP------TETLNLPPPINGQDSTSHNEPLQNADDEQIQPSIPQSTDDVTTTAAEKR 54
MAS P +TLN P ING D+ P ++ DE+++PS+PQSTD + + EKR
Sbjct: 1 MASSPEDQTSAKQTLN--PSINGNDAPC--PPQEHVGDEELKPSVPQSTDVIES--GEKR 54
Query: 55 KREDVATEGPQSESAEPSPSPSLHPLHKTSLCSYFRK-VGTCCHGSTCRYAHGEEELRIR 113
KR D A S++ HPL KTSLCSYFR G+C HG CRYAHGEEELR R
Sbjct: 55 KRSDPA----DSDNCR-------HPLWKTSLCSYFRSHSGSCSHGDACRYAHGEEELRQR 103
Query: 114 PDNTWDPTSERAKKARKLEDGDKCEAKEDAVEEVMMTEAVVDGDGDGDQDVELSKCLVHL 173
PDNTWDPTSERAKK K E G+KC++KED +VMMTEAVVD D D LSKCL+HL
Sbjct: 104 PDNTWDPTSERAKKLLKSESGEKCDSKED---DVMMTEAVVDDDC---ADPGLSKCLLHL 157
Query: 174 PRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLK 233
P KWHSD L+ FL G++YKSAKKKKGM +GFV FES EQLKNA+EELEG SIGNK LK
Sbjct: 158 PPKWHSDQLRDFLGQQGVIYKSAKKKKGMMIGFVTFESAEQLKNAMEELEGKSIGNKNLK 217
Query: 234 VANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAGDGS 293
V +++PRSF+K S + L + ++ E+A+ G+ + SS G EDG+ + A D S
Sbjct: 218 VGDILPRSFEKKNNSALPLHQSTQKNMETALGGDDTDVSMSSFGLEDGDAVCDSSASD-S 276
Query: 294 GLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSRE 353
LK +SARDV TPLAH++Y+ QLEHKKNS+ Q LKKLTRNARKACPNGVSLPEWI+KSRE
Sbjct: 277 VLKARSARDVATPLAHLTYTDQLEHKKNSLMQTLKKLTRNARKACPNGVSLPEWILKSRE 336
Query: 354 IGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPN 413
IGGLPCK EGIL SPLVNGYRNKCEFSVGYSLQ KPTVGFMLGNFREG+TAVEEP DCPN
Sbjct: 337 IGGLPCKFEGILESPLVNGYRNKCEFSVGYSLQGKPTVGFMLGNFREGITAVEEPADCPN 396
Query: 414 VSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEV 473
VS IA +YA+IFQEFLQ S LP+WNRF N+GFWRQLTVREGR PGK E ISE
Sbjct: 397 VSMIARRYATIFQEFLQHSGLPLWNRFNNTGFWRQLTVREGRKPGKA-----AEAKISEP 451
Query: 474 NISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVA 533
+ISEV+++ QV S DD ++N EFERLA+AF GATASSP LPLTALV+QDH+G+SNVA
Sbjct: 452 SISEVLVMVQVCSKGIDDEILNGEFERLAQAFTMGATASSP-LPLTALVVQDHKGISNVA 510
Query: 534 PADAPLRLLSIPK--ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYS 591
ADAPLR L IPK +D P+ +VEARIHD ISNLRFCISPTAFFQVNTLAAEKLYS
Sbjct: 511 SADAPLRPLPIPKEGSDSGPDAGGQIVEARIHDYISNLRFCISPTAFFQVNTLAAEKLYS 570
Query: 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNC 651
L GDWA LGPDTLLFDVCCGTGTIGLTLAHRVGMV+GIEMNASAVSDA RNAE+NGIKNC
Sbjct: 571 LAGDWAGLGPDTLLFDVCCGTGTIGLTLAHRVGMVVGIEMNASAVSDAQRNAELNGIKNC 630
Query: 652 RFVCAKAEDVMGSLLKDYLNPLREEDE--HASEGSNKEITIAEEKDSSRDNVPENEGCSG 709
RFVCAKAEDVMGSLLK+YL+ + ++E S+ +K I+ +E+K S +N EG S
Sbjct: 631 RFVCAKAEDVMGSLLKEYLSVPQRQNEVPDFSQSDDKVISNSEDKMESINNALNPEGSSS 690
Query: 710 QDPENDIADSNCPEGSGKEPQSQLQKDCTS-EGNSLAQPFKNVVAIVDPPRGGLHPTVIK 768
+ E+ S C E +E +++L C+S +GN + FKN VAIVDPPRGGLHP VIK
Sbjct: 691 HELESGKGASGCLENVQRESKNELHNGCSSKDGNISVRQFKNFVAIVDPPRGGLHPIVIK 750
Query: 769 ILRTHARLQRLLHI 782
LRTHA L+RL++I
Sbjct: 751 ALRTHACLRRLVYI 764
>gi|224106744|ref|XP_002314271.1| predicted protein [Populus trichocarpa]
gi|222850679|gb|EEE88226.1| predicted protein [Populus trichocarpa]
Length = 830
Score = 941 bits (2431), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/760 (66%), Positives = 583/760 (76%), Gaps = 27/760 (3%)
Query: 32 DEQIQPSIPQSTDDVTTTAAEKRKREDVATEGPQSESAEPSPSPSLHPLHKTSLCSYFRK 91
++QIQPS Q DD TT EKRKRE T ++E+ + PSL+P HKTSLCSYFR+
Sbjct: 11 EQQIQPSNNQ--DDTATTTGEKRKREKTTTTTTEAETETET-DPSLNPFHKTSLCSYFRR 67
Query: 92 V--GTCCHGSTCRYAHGEEELRIRPDNTWDPTSERAKKARKLEDGDKCEAKEDAVEE-VM 148
+C HGS C+YAHGEEELR RPDNTWDPTSERAKKA KL+ + ++KE+ +E +M
Sbjct: 68 HMGASCSHGSACKYAHGEEELRPRPDNTWDPTSERAKKAIKLDTTNNNDSKEEDEDEEIM 127
Query: 149 MTEAVVDGDGDGDQDVE-LSKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFV 207
MT+ DGDGDG LSKCLVHLPRKW SD+L+KFL+D GIL+KSAKKKKGM+VGF+
Sbjct: 128 MTDIAADGDGDGGCLDTGLSKCLVHLPRKWLSDHLRKFLSDQGILFKSAKKKKGMSVGFL 187
Query: 208 KFESVEQLKNAVEELEGISIGNKTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGE 267
FE EQLK A+EELEG SIGNK +KVA+V+PR F++ IKS M N Q E A+ GE
Sbjct: 188 SFEDAEQLKKAIEELEGRSIGNKNIKVADVIPRQFEQKIKSAMAAPQNIPQTMEPALDGE 247
Query: 268 LAEAHASSNGHEDGNGNDEGLAGDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQML 327
A S + + DGS + K ARDV TPLAHM Y QLEHKKNSI QML
Sbjct: 248 NAGISRPS----------DAIGDDGSSSQAKCARDVATPLAHMPYDDQLEHKKNSIMQML 297
Query: 328 KKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQA 387
KKLTRNARKACPNGVSLPEWI+KSREIGGLPC+LEGIL SPL NGYRNKCEFSVGYSLQ
Sbjct: 298 KKLTRNARKACPNGVSLPEWILKSREIGGLPCELEGILESPLRNGYRNKCEFSVGYSLQG 357
Query: 388 KPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWR 447
KPTVGFMLGNFREGVTAVEEP+ CPNVS +ACKYASIFQEFLQQS LP+WNRFKN+GFWR
Sbjct: 358 KPTVGFMLGNFREGVTAVEEPLGCPNVSSVACKYASIFQEFLQQSGLPIWNRFKNTGFWR 417
Query: 448 QLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAA 507
QLTVREGR P K D+ I E +ISEVMLI QVSS FDD ++ +E LA AF
Sbjct: 418 QLTVREGRLPRKAADIA-----IPEAHISEVMLIVQVSSVGFDDDMITNELRGLAHAFTT 472
Query: 508 GATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADG--EPEESNDVVEARIHDS 565
GA S+P LPLTALVIQDHQG+SNVAPADAPLR L +P A+G E + +++V EARIHD
Sbjct: 473 GAAGSAPPLPLTALVIQDHQGLSNVAPADAPLRTLLLPNANGGSEVQATSNVAEARIHDY 532
Query: 566 ISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGM 625
ISNLRF ISPTAFFQVNTLAAEKLYSL GDWA LGPD+LLFD+CCGTGTIGLTLA RVGM
Sbjct: 533 ISNLRFSISPTAFFQVNTLAAEKLYSLAGDWAGLGPDSLLFDICCGTGTIGLTLADRVGM 592
Query: 626 VIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDE--HASEG 683
V+GIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV+GSLLK+YL+ ++E E +ASE
Sbjct: 593 VVGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVIGSLLKEYLDVPQKEGEQLNASEI 652
Query: 684 SNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCPEGSGKEPQSQLQKDCTS-EGN 742
+KEI + E ++ D+V ++ D N S E G+E QSQLQK CTS EG+
Sbjct: 653 RDKEIAMVEVNNAPMDDVLDSSKNPSHDLGNGEGASGESENDGQEIQSQLQKSCTSKEGS 712
Query: 743 SLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
S FKNVVAIVDPPRGGLHP VIK+LRTH+R++RL++I
Sbjct: 713 SSMLHFKNVVAIVDPPRGGLHPIVIKVLRTHSRVRRLVYI 752
>gi|255578870|ref|XP_002530289.1| RNA m5u methyltransferase, putative [Ricinus communis]
gi|223530187|gb|EEF32096.1| RNA m5u methyltransferase, putative [Ricinus communis]
Length = 863
Score = 937 bits (2423), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/721 (66%), Positives = 556/721 (77%), Gaps = 27/721 (3%)
Query: 76 SLHPLHKTSLCSYFRK-VGTCCHGSTCRYAHGEEELRIRPDNTWDPTSERAKKARKLE-D 133
S +P +KTSLCSYFR+ +C HGS C+YAHGEEELR RPDNTWDPTSERAKKA KLE +
Sbjct: 77 SHNPYYKTSLCSYFRRHSASCSHGSECKYAHGEEELRQRPDNTWDPTSERAKKAIKLEKN 136
Query: 134 GDKCEAKEDAVEEVMMTEAVVDGDGDGDQ-------DVELSKCLVHLPRKWHSDNLKKFL 186
D C+ KE+ EE+MMTE + D DGDG D ELSKCLVHLPRKW+SDN K FL
Sbjct: 137 SDNCDVKEEK-EEIMMTEMIGDDDGDGAGGEGGGCLDPELSKCLVHLPRKWNSDNFKNFL 195
Query: 187 ADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRSFDKNI 246
+ G+L+K AKKKKGM VGFV FE+ +QLK A E LEG S+GNK +KVA+V+PRS+DKNI
Sbjct: 196 NEQGVLFKWAKKKKGMVVGFVTFETADQLKKASEGLEGKSVGNKKVKVADVIPRSYDKNI 255
Query: 247 KSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLKVKSARDVVTP 306
KS M L N Q ES + GE A+ EDG+ ++ D S K KSA +VVTP
Sbjct: 256 KSAMALPHNNSQKMESLLDGENADVI------EDGDRSNGASKFDSSTSKAKSACEVVTP 309
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
LAHMSY QLEHKKNSI QMLKKLTRNARKACPNGVSLPEW++KSREIGGL C LEGIL
Sbjct: 310 LAHMSYEDQLEHKKNSIMQMLKKLTRNARKACPNGVSLPEWVLKSREIGGLACSLEGILE 369
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
SPLVNGYRNKCEFSVGYSLQ KP VGFMLGNFR+GVTAVEEP+DCPNVS IA KYA IFQ
Sbjct: 370 SPLVNGYRNKCEFSVGYSLQGKPIVGFMLGNFRDGVTAVEEPMDCPNVSSIASKYALIFQ 429
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
EFLQ+S LP+WNRFKN+GFWRQLTVREGR P K D++ +VN+SE+MLI QV
Sbjct: 430 EFLQESGLPIWNRFKNTGFWRQLTVREGRLPEKDADIK------GDVNMSEIMLIVQVCL 483
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
A FDD ++NSE RLA AF GA A+SP LPL LV+QDHQG+SNVAPADAPLR+L +P
Sbjct: 484 AGFDDELINSELWRLAHAFTTGAAANSPPLPLKVLVLQDHQGISNVAPADAPLRILPLPN 543
Query: 547 AD--GEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTL 604
+ E E + +VVEARIHD I+NLRF ISPTAFFQVNTLAAE+LYSL GDWA LGPDTL
Sbjct: 544 VESSSEAEATKNVVEARIHDHINNLRFSISPTAFFQVNTLAAERLYSLAGDWAGLGPDTL 603
Query: 605 LFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664
LFD+CCGTGTIGLTLAHRVGMV+GIEMNASAVSDAHRNAEINGI+NCRF+CAKAE VM S
Sbjct: 604 LFDICCGTGTIGLTLAHRVGMVVGIEMNASAVSDAHRNAEINGIRNCRFICAKAESVMAS 663
Query: 665 LLKDYLNPLREEDE--HASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCP 722
LLK+YLN +++DE +A E S+K++T E+KD+ NV + S + N +DS C
Sbjct: 664 LLKEYLNEPQKQDEVSYAGETSDKDLTACEDKDTPVGNVVDTTENSSHELGNGKSDSRCS 723
Query: 723 EGSGKEPQSQLQKDCTSEGNSLAQP-FKNVVAIVDPPRGGLHPTVIKILRTHARLQRLLH 781
E +E Q Q C S+ + + P FKNVVAIVDPPR GLHPTVIK LRTH+ L+RL++
Sbjct: 724 EDGEQEHQIHPQDSCASKDGTYSVPQFKNVVAIVDPPRNGLHPTVIKALRTHSHLRRLVY 783
Query: 782 I 782
I
Sbjct: 784 I 784
>gi|297746249|emb|CBI16305.3| unnamed protein product [Vitis vinifera]
Length = 788
Score = 931 bits (2407), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/793 (62%), Positives = 572/793 (72%), Gaps = 95/793 (11%)
Query: 1 MASFP------TETLNLPPPINGQDSTSHNEPLQNADDEQIQPSIPQSTDDVTTTAAEKR 54
MAS P +TLN P ING D+ P ++ DE+++PS+PQSTD + + EKR
Sbjct: 1 MASSPEDQTSAKQTLN--PSINGNDAPC--PPQEHVGDEELKPSVPQSTDVIES--GEKR 54
Query: 55 KREDVATEGPQSESAEPSPSPSLHPLHKTSLCSYFRK-VGTCCHGSTCRYAHGEEELRIR 113
KR D A S++ HPL KTSLCSYFR G+C HG CRYAHGEEELR R
Sbjct: 55 KRSDPA----DSDNCR-------HPLWKTSLCSYFRSHSGSCSHGDACRYAHGEEELRQR 103
Query: 114 PDNTWDPTSERAKKARKLEDGDKCEAKEDAVEEVMMTEAVVDGDGDGDQDVELSKCLVHL 173
PDNTWDPTSERAKK K E G+KC++KED +VMMTEAVVD D D LSKCL+HL
Sbjct: 104 PDNTWDPTSERAKKLLKSESGEKCDSKED---DVMMTEAVVDDDC---ADPGLSKCLLHL 157
Query: 174 PRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLK 233
P KWHSD L+ FL G++YKSAKKKKGM +GFV FES EQLKNA+EELEG SIGNK LK
Sbjct: 158 PPKWHSDQLRDFLGQQGVIYKSAKKKKGMMIGFVTFESAEQLKNAMEELEGKSIGNKNLK 217
Query: 234 VANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAGDGS 293
V +++PRSF+K S + L + ++ E+A LA D S
Sbjct: 218 VGDILPRSFEKKNNSALPLHQSTQKNMETA------------------------LASD-S 252
Query: 294 GLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSRE 353
LK +SARDV TPLAH++Y+ QLEHKKNS+ Q LKKLTRNARKACPNGVSLPEWI+KSRE
Sbjct: 253 VLKARSARDVATPLAHLTYTDQLEHKKNSLMQTLKKLTRNARKACPNGVSLPEWILKSRE 312
Query: 354 IGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPN 413
IGGLPCK EGIL SPLVNGYRNKCEFSVGYSLQ KPTVGFMLGNFREG+TAVEEP DCPN
Sbjct: 313 IGGLPCKFEGILESPLVNGYRNKCEFSVGYSLQGKPTVGFMLGNFREGITAVEEPADCPN 372
Query: 414 VSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEV 473
VS IA +YA+IFQEFLQ S LP+WNRF N+GFWRQLTVREGR PGK E ISE
Sbjct: 373 VSMIARRYATIFQEFLQHSGLPLWNRFNNTGFWRQLTVREGRKPGKAA-----EAKISEP 427
Query: 474 NISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVA 533
+ISEV+++ QV S DD ++N EFERLA+AF GATASSP LPLTALV+QDH+G+SNVA
Sbjct: 428 SISEVLVMVQVCSKGIDDEILNGEFERLAQAFTMGATASSP-LPLTALVVQDHKGISNVA 486
Query: 534 PADAPLRLLSIPK--ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYS 591
ADAPLR L IPK +D P+ +VEARIHD ISNLRFCISPTAFFQVNTLAAEKLYS
Sbjct: 487 SADAPLRPLPIPKEGSDSGPDAGGQIVEARIHDYISNLRFCISPTAFFQVNTLAAEKLYS 546
Query: 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNC 651
L GDWA LGPDTLLFDVCCGTGTIGLTLAHRVGMV+GIEMNASAVSDA RNAE+NGIKNC
Sbjct: 547 LAGDWAGLGPDTLLFDVCCGTGTIGLTLAHRVGMVVGIEMNASAVSDAQRNAELNGIKNC 606
Query: 652 RFVCAKAEDVMGSLLKDYLNPLREEDE--HASEGSNKEITIAEEKDSSRDNVPENEGCSG 709
RFVCAKAEDVMGSLLK+YL+ + ++E S+ +K I+ +E+K S +N EG S
Sbjct: 607 RFVCAKAEDVMGSLLKEYLSVPQRQNEVPDFSQSDDKVISNSEDKMESINNALNPEGSSS 666
Query: 710 QDPENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPPRGGLHPTVIKI 769
+ E+ + FKN VAIVDPPRGGLHP VIK
Sbjct: 667 HELES------------------------------VRQFKNFVAIVDPPRGGLHPIVIKA 696
Query: 770 LRTHARLQRLLHI 782
LRTHA L+RL++I
Sbjct: 697 LRTHACLRRLVYI 709
>gi|356544604|ref|XP_003540739.1| PREDICTED: zinc finger CCCH domain-containing protein 24-like
[Glycine max]
Length = 888
Score = 898 bits (2321), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/841 (59%), Positives = 578/841 (68%), Gaps = 121/841 (14%)
Query: 14 PINGQDSTSHNEPLQNA-DDEQIQPSIPQSTDDVTTTAAEKRKREDVATEGPQSESAEPS 72
P NG DSTS EP Q A +D Q+ DDV TA KRKR+D +
Sbjct: 18 PTNGHDSTS--EPHQTAPEDSQLN-----REDDVVPTA--KRKRDDDVEDR--------- 59
Query: 73 PSPSLHPLHKTSLCSYFRK-VGTCCHGSTCRYAHGEEELRIRPDNTWDPTSERAKKARKL 131
SLHPL KTSLCSYFR G+C HG CRYAHGEEELR RPDNTWDPTSERAKKA K
Sbjct: 60 ---SLHPLWKTSLCSYFRSHNGSCSHGGACRYAHGEEELRPRPDNTWDPTSERAKKALKT 116
Query: 132 EDGDKCEAKEDAVEEVMMTEAVVDGDGDG-DQDVELSKCLVHLPRKWHSDNLKKFLADHG 190
E + K EEVMMTEAVVD DG + L+ CLVHLPRKW S+NL+ FL++ G
Sbjct: 117 ES----DEKRAVSEEVMMTEAVVDDGDDGCGANHALNICLVHLPRKWSSENLRTFLSEQG 172
Query: 191 ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRSFDKNIKSPM 250
I +K AKKKKGM +GFV FE EQLK++ ELEG SIGNKT+KVANV+PRSF+K
Sbjct: 173 IPFKHAKKKKGMMIGFVTFEDEEQLKSSTMELEGKSIGNKTVKVANVLPRSFEK------ 226
Query: 251 TLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLKVKSARDVVTPLAHM 310
NA AS + E A +S+G DG N++ LA K ++ RD VTPLAHM
Sbjct: 227 --KSNAIVASRQELDEENAGVDVASSGTLDGETNNDNLA------KTRNVRDAVTPLAHM 278
Query: 311 SYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLV 370
+Y+ QLE K +S+ Q+LKKLTRNARKACPNGVSLPEWI+KSREIGGLPCKLEGI+ SP+V
Sbjct: 279 AYADQLEQKTSSLMQILKKLTRNARKACPNGVSLPEWILKSREIGGLPCKLEGIIASPIV 338
Query: 371 NGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQ 430
NGYRNKCEFSVGYSL+ K TVGFMLGNFREGVTAVEE VDCPNVS +ACKYA+IFQEFLQ
Sbjct: 339 NGYRNKCEFSVGYSLEGKVTVGFMLGNFREGVTAVEEAVDCPNVSTVACKYATIFQEFLQ 398
Query: 431 QSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFD 490
SDLPVWNRFKN+GFWRQLTVREGR+ G +D E ++EVMLI QVS+A+FD
Sbjct: 399 DSDLPVWNRFKNTGFWRQLTVREGRTNGNVVDAETFS------GVAEVMLIVQVSTASFD 452
Query: 491 DAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGE 550
DA V +EF+RLA+AF AGAT+ P LPLTALV+QDHQG+SNVAPADAPL L IP+A G+
Sbjct: 453 DAKVAAEFKRLAQAFVAGATSHCPILPLTALVVQDHQGISNVAPADAPLHSLPIPEAAGD 512
Query: 551 PE--ESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDV 608
PE E+N+ + RIHD I+NL+F ISPTAFFQVNTLAAEKLYSL GDW+ LGPDTLLFD+
Sbjct: 513 PEVDENNNAKDVRIHDHINNLQFSISPTAFFQVNTLAAEKLYSLAGDWSCLGPDTLLFDI 572
Query: 609 CCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
CCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKN +F+C+KAEDVMGSLL++
Sbjct: 573 CCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNVKFICSKAEDVMGSLLRE 632
Query: 669 YLNPLREE-DEHASEGSNKEITIAEEKDSS---------RDNVPEN----------EGCS 708
YLN +E+ D+ GS +I KDS+ PEN +GC+
Sbjct: 633 YLNVTKEQVDDPNISGSGNDIP----KDSACPEPENCEIASRCPENNIAEVGSEVQKGCT 688
Query: 709 GQ-----------------------------DP-----ENDI-ADSNCPEGSGKEPQS-- 731
+ DP NDI D CPE E S
Sbjct: 689 CEQADGISEQAEDVMGSLLRGDANVAKEQSDDPNVSGSSNDIPVDGTCPEPENGEITSHS 748
Query: 732 ---------QLQKDCTSE-GNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRLLH 781
++QK +SE G + Q FKNVVAIVDPPR GLHPTVIK LRTH L+RL++
Sbjct: 749 ENNNAEVGGEVQKGISSENGKTSLQQFKNVVAIVDPPRAGLHPTVIKALRTHPGLRRLVY 808
Query: 782 I 782
I
Sbjct: 809 I 809
>gi|356541487|ref|XP_003539207.1| PREDICTED: zinc finger CCCH domain-containing protein 24-like
[Glycine max]
Length = 833
Score = 897 bits (2319), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/800 (61%), Positives = 562/800 (70%), Gaps = 94/800 (11%)
Query: 14 PINGQDSTSHNEPLQNADDEQIQPSIPQSTDDVTTTAAEKRKREDVATEGPQSESAEPSP 73
P N DSTS EP Q A +E DDV TA KRKR D E
Sbjct: 18 PTNRHDSTS--EPHQTAPEEVEL----NREDDVVPTA--KRKRNDGVVE----------- 58
Query: 74 SPSLHPLHKTSLCSYFRKV-GTCCHGSTCRYAHGEEELRIRPDNTWDPTSERAKKARKLE 132
LHPL KTSLCSYFR G+C HG CRYAHGEEELR+RPDNTWDPTSERAKKA K E
Sbjct: 59 DRLLHPLWKTSLCSYFRSHNGSCSHGGACRYAHGEEELRLRPDNTWDPTSERAKKALKTE 118
Query: 133 DGDKCEAKEDAVEEVMMTEAVVDGDGDGDQDVE-----LSKCLVHLPRKWHSDNLKKFLA 187
DK EEVMMTEAVVD D LSKCLVHLPRKW S+N + FL+
Sbjct: 119 SDDK----RAVSEEVMMTEAVVDDGDADGDDGCGANHALSKCLVHLPRKWSSENFRTFLS 174
Query: 188 DHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRSFDKNIK 247
+ GI +K AKKKKGM +GFV FE EQLK++ +ELEG SIGNKT+KVA+V+PRSF+K
Sbjct: 175 EQGIAFKHAKKKKGMMIGFVTFEDEEQLKSSTKELEGKSIGNKTVKVADVLPRSFEK--- 231
Query: 248 SPMTLSGNAKQASESAVPGELAEA-HASSNGHEDGNGNDEGLAGDGSGLKVKSARDVVTP 306
NA AS EL E +S+G DG N++ LA K ++ RD VTP
Sbjct: 232 -----KSNASVASHQ----ELDEGVDVASSGTLDGETNNDNLA------KTRNVRDAVTP 276
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
LAHM+Y+ QLE KK+++ +LKKLTRNARKACPNGVSLPEWI+KSREIGGLPCKLEGI+
Sbjct: 277 LAHMAYADQLEQKKSALMLILKKLTRNARKACPNGVSLPEWILKSREIGGLPCKLEGIIA 336
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
SP+VNGYRNKCEFSVGYSL K TVGFMLGNFREGVTAVEE VDCPNVS IACKYA+IFQ
Sbjct: 337 SPIVNGYRNKCEFSVGYSLGGKVTVGFMLGNFREGVTAVEEAVDCPNVSTIACKYATIFQ 396
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
EFLQ SDLPVWNRFKN+GFWRQLTVREGR+ G +D E I+EVMLI QVS+
Sbjct: 397 EFLQDSDLPVWNRFKNTGFWRQLTVREGRTNGNAVDAETFG------GIAEVMLIVQVST 450
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
A+FDDA V +EF+RLA+AF GAT+ +LPLTALV+QDHQG+SNVAPADAPL LL IPK
Sbjct: 451 ASFDDAKVAAEFKRLAQAFVVGATSHCSTLPLTALVVQDHQGISNVAPADAPLHLLPIPK 510
Query: 547 A--DGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTL 604
A D E +E+N+ + RIHD ++NL+F ISPTAFFQVNTLAAEKLYSL GDWA LGPDTL
Sbjct: 511 AAGDSEVDENNNAKDVRIHDYVNNLQFSISPTAFFQVNTLAAEKLYSLAGDWACLGPDTL 570
Query: 605 LFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664
LFD+CCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKN +F+C+KAEDVMGS
Sbjct: 571 LFDICCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNIKFICSKAEDVMGS 630
Query: 665 LLKDYLNPLREE--DEHASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCP 722
LL+++LN +E+ D + S N + PE+ C +PEN S+CP
Sbjct: 631 LLREHLNVTKEQVDDPNISGKGN--------------DSPEDSACP--EPENGELASHCP 674
Query: 723 EGSGKEPQSQLQKDCTSE--------------------GNSLAQPFKNVVAIVDPPRGGL 762
E + E S++QK T E G + Q FKNVVAIVDPPR GL
Sbjct: 675 ENNNAEVGSEVQKGSTCEQADGISEQAEDVQKGSTSRNGKTSLQQFKNVVAIVDPPRAGL 734
Query: 763 HPTVIKILRTHARLQRLLHI 782
HPTVIK LRTH L+RL++I
Sbjct: 735 HPTVIKALRTHPGLRRLVYI 754
>gi|449502491|ref|XP_004161655.1| PREDICTED: zinc finger CCCH domain-containing protein 24-like
[Cucumis sativus]
Length = 889
Score = 883 bits (2282), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/823 (58%), Positives = 586/823 (71%), Gaps = 83/823 (10%)
Query: 10 NLPPPINGQDSTSHNEPLQNADDEQIQPSIPQSTDDV----TTTAAEKRKREDVATEGPQ 65
+L ++ QD T N P+ A +QP D+ + A EKRKR D P
Sbjct: 21 HLQTSMDAQDDT-ENLPVTTA----LQPESLTDQSDLQSNGASVAGEKRKRTD-----PD 70
Query: 66 SESAEPSPSPSLHPLHKTSLCSYFRK-VGTCCHGSTCRYAHGEEELRIRPDNTWDPTSER 124
S++A+P+P PS +PL KTSLCSYFR+ G+C HG CRYAHGEEELR RPD +WDPTSER
Sbjct: 71 SDAAKPNPDPSTNPLWKTSLCSYFRRHSGSCSHGIECRYAHGEEELRQRPDKSWDPTSER 130
Query: 125 AKKARKLEDGDKCEAKEDAVEEVMMTEAVVDGD----GDGDQDVELSKCLVHLPRKWHSD 180
AKK K +E EEVMMTE VVD D G+ +D EL+KCLVHLP KW+SD
Sbjct: 131 AKKVMK-------VGEEVKEEEVMMTEVVVDDDDDEVGNDGRDNELTKCLVHLPTKWNSD 183
Query: 181 NLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240
NL+ +L + +L+KSAKKKKGMTVGFV FES EQL+++VEEL+G IG K LKVA+V+PR
Sbjct: 184 NLRNYLNELSVLFKSAKKKKGMTVGFVSFESTEQLRSSVEELQGKIIGKKNLKVADVIPR 243
Query: 241 SFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLKVKSA 300
SF+K IKS + ++ ++ A + +S++G + GN ND + S LK KSA
Sbjct: 244 SFEKKIKSSIDCDNSSVSSA--------AFSLSSNDGEDAGNINDGSSTPNDSVLKGKSA 295
Query: 301 RDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCK 360
R+VV PLAHMSYS QL+HKKNS+ +LKKLTRNARKACP+GVSLPEWI+KSR+IGG+ C
Sbjct: 296 REVVAPLAHMSYSDQLDHKKNSLLHVLKKLTRNARKACPHGVSLPEWILKSRDIGGIACS 355
Query: 361 LEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
EGI+ SP++NGYRNKCEFSVGYSL+ KPTVGFMLGNFREGVTAVEEP +CPNVS I+CK
Sbjct: 356 FEGIIESPIINGYRNKCEFSVGYSLEGKPTVGFMLGNFREGVTAVEEPENCPNVSRISCK 415
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
YAS FQEFLQ S LP+WNRFKN GFWRQLTVREGR+PGK +D +N S+ +ISEVML
Sbjct: 416 YASTFQEFLQSSSLPIWNRFKNIGFWRQLTVREGRAPGKLIDSDN-----SDASISEVML 470
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
I QV S + ++ SEF+RLA+AFA G+ A+SP LPLTALVIQ HQG+SN APAD PL+
Sbjct: 471 IVQVCSVGVESELMTSEFKRLAQAFAEGSVANSPPLPLTALVIQHHQGISNAAPADTPLQ 530
Query: 541 LLSIPKA-DGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
L+IPK E E +ND VE RIHD ISNL+FCISPTAFFQVNTLAAEKLYSL GDWA+L
Sbjct: 531 PLTIPKVHSAELEATNDAVEPRIHDYISNLKFCISPTAFFQVNTLAAEKLYSLAGDWAEL 590
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659
GPDTLLFD+CCGTGTIGLTLAHRVGMV+GIEMNASAVSDA RNAEINGI NC+F+CAKAE
Sbjct: 591 GPDTLLFDICCGTGTIGLTLAHRVGMVVGIEMNASAVSDAQRNAEINGINNCKFICAKAE 650
Query: 660 DVMGSLLKDYLNPLREEDEH-----------ASEGSNKEITIAEEKD----SSRDNVPEN 704
DV+GSLLK+YL ++E+E+ ++ N+EI+ A EK+ + + EN
Sbjct: 651 DVIGSLLKEYLKGTKKEEENVCHSNGNDGTSSASNQNEEISGAPEKNEETPGASEKSGEN 710
Query: 705 EGC-----------------SGQD--------PENDIADSNCPEGSGKEPQSQLQKDCTS 739
+G S +D PEND E + ++ S+ CTS
Sbjct: 711 QGAKEKSDEVSETGERNALMSNKDQDPVVNHVPENDANGLETSEVASEKNGSK-HNCCTS 769
Query: 740 EGNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
E S + FKNVVAIVDPPRGGLHP V K+LRTH L+RL++I
Sbjct: 770 E--SGTKQFKNVVAIVDPPRGGLHPIVTKVLRTHTHLKRLVYI 810
>gi|449456002|ref|XP_004145739.1| PREDICTED: zinc finger CCCH domain-containing protein 24-like
[Cucumis sativus]
Length = 889
Score = 882 bits (2280), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/822 (58%), Positives = 582/822 (70%), Gaps = 81/822 (9%)
Query: 10 NLPPPINGQDSTSHNEPLQNADDEQIQPSIPQSTDDV----TTTAAEKRKREDVATEGPQ 65
+L ++ QD T N P+ A +QP D+ + A EKRKR D P
Sbjct: 21 HLQTSMDAQDDT-ENLPVTTA----LQPESLTDQSDLQSNGASVAGEKRKRTD-----PD 70
Query: 66 SESAEPSPSPSLHPLHKTSLCSYFRK-VGTCCHGSTCRYAHGEEELRIRPDNTWDPTSER 124
S++A+P+P PS +PL KTSLCSYFR+ G+C HG CRYAHGEEELR RPD +WDPTSER
Sbjct: 71 SDAAKPNPDPSTNPLWKTSLCSYFRRHSGSCSHGIECRYAHGEEELRQRPDKSWDPTSER 130
Query: 125 AKKARKLEDGDKCEAKEDAVEEVMMTEAVVDGD----GDGDQDVELSKCLVHLPRKWHSD 180
AKK K +E EEVMMTE VVD D G+ +D EL+KCLVHLP KW+SD
Sbjct: 131 AKKVMK-------VGEEVKEEEVMMTEVVVDDDDDEVGNDGRDNELTKCLVHLPTKWNSD 183
Query: 181 NLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240
NL+ +L + +L+KSAKKKKGMTVGFV FES EQL+++VEEL+G IG K LKVA+V+PR
Sbjct: 184 NLRNYLNELSVLFKSAKKKKGMTVGFVSFESTEQLRSSVEELQGKIIGKKNLKVADVIPR 243
Query: 241 SFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLKVKSA 300
SF+K IKS + ++ ++ A + +S++G + GN ND + S LK KSA
Sbjct: 244 SFEKKIKSSIDCDNSSVSSA--------AFSLSSNDGEDAGNINDGSSTPNDSVLKGKSA 295
Query: 301 RDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCK 360
R+VV PLAHMSYS QL+HKKNS+ +LKKLTRNARKACP+GVSLPEWI+KSR+IGG+ C
Sbjct: 296 REVVAPLAHMSYSDQLDHKKNSLLHVLKKLTRNARKACPHGVSLPEWILKSRDIGGIACS 355
Query: 361 LEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
EGI+ SP++NGYRNKCEFSVGYSL+ KPTVGFMLGNFREGVTAVEEP +CPNVS I+CK
Sbjct: 356 FEGIIESPIINGYRNKCEFSVGYSLEGKPTVGFMLGNFREGVTAVEEPENCPNVSRISCK 415
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
YAS FQEFLQ S LP+WNRFKN GFWRQLTVREGR+PGK +D +N S+ +ISEVML
Sbjct: 416 YASTFQEFLQSSSLPIWNRFKNIGFWRQLTVREGRAPGKLIDSDN-----SDASISEVML 470
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
I QV S + ++ SEF+RLA+AFA G+ A+SP LPLTALVIQ HQG+SN APAD PL+
Sbjct: 471 IVQVCSVGVESELMTSEFKRLAQAFAEGSVANSPPLPLTALVIQHHQGISNAAPADTPLQ 530
Query: 541 LLSIPKADG-EPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
L+IPK E E +ND VE RIHD ISNL+FCISPTAFFQVNTLAAEKLYSL GDWA+L
Sbjct: 531 PLTIPKVHSTELEATNDAVEPRIHDYISNLKFCISPTAFFQVNTLAAEKLYSLAGDWAEL 590
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659
GPDTLLFD+CCGTGTIGLTLAHRVGMV+GIEMNASAVSDA RNAEINGI NC+F+CAKAE
Sbjct: 591 GPDTLLFDICCGTGTIGLTLAHRVGMVVGIEMNASAVSDAQRNAEINGINNCKFICAKAE 650
Query: 660 DVMGSLLKDYLNPLREEDEH-----------ASEGSNKEITIAEEKD----SSRDNVPEN 704
DV+GSLLK+YL ++E+E+ ++ N+EI+ A EK+ + + EN
Sbjct: 651 DVIGSLLKEYLKGTKKEEENVCHSNGNDGTSSASNQNEEISGAPEKNEETPGASEKSGEN 710
Query: 705 EGCSGQ---------------DPENDIADSNCPEGSGK---------EPQSQLQKDCTSE 740
+G + D + D ++ PE E CTSE
Sbjct: 711 QGAKEKSDEVSETGERNALMSDKDQDPVVNHVPENDANGLETSEVASEKNGSKHNCCTSE 770
Query: 741 GNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
S + FKNVVAIVDPPRGGLHP V K+LRTH L+RL++I
Sbjct: 771 --SGTKQFKNVVAIVDPPRGGLHPIVTKVLRTHTHLKRLVYI 810
>gi|357472221|ref|XP_003606395.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]
gi|355507450|gb|AES88592.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]
Length = 850
Score = 865 bits (2234), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/779 (59%), Positives = 553/779 (70%), Gaps = 67/779 (8%)
Query: 11 LPPPINGQDSTSHNEPLQNADDEQIQPSIPQSTDDVTTTAAEKRKREDVATEGPQSESAE 70
L PIN DSTS P P I + +DV TT EKRKR+D +A+
Sbjct: 13 LETPINAHDSTSEPHPTPPK-----SPQINEPINDVVTT--EKRKRDD------GDGNAD 59
Query: 71 PSPSPSLHPLHKTSLCSYFRKVGTCCHGSTCRYAHGEEELRIRPDNTWDPTSERAKKARK 130
PSLHPL KTSLCSYFRK TC HG TCRYAH EEELR RPDNTWDPTSER KK K
Sbjct: 60 EDDKPSLHPLWKTSLCSYFRKHSTCSHGDTCRYAHSEEELRQRPDNTWDPTSERGKKMLK 119
Query: 131 LEDGDKCEAKEDAVEEVMMTEAVVDGDGDGD------QDVELSKCLVHLPRKWHSDNLKK 184
G+K K+ VMMTE V + DGDG + LSKCLVHLP KW S+NL+
Sbjct: 120 SVTGEKIAVKDG----VMMTELVDEVDGDGGGEEGFASNQALSKCLVHLPMKWTSENLRT 175
Query: 185 FLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRSFDK 244
FL + GI +K AK +KGM++GFV FE EQ+K++ ++L+G IGNKTL+VA+V PRSF+K
Sbjct: 176 FLNEQGIPFKHAKTRKGMSIGFVTFEDEEQMKSSAKDLQGKQIGNKTLEVADVNPRSFEK 235
Query: 245 NIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLKVKSARDVV 304
S S VP S+G ND+ L DGS K KS+R+VV
Sbjct: 236 K--------------SNSNVP---------SSGTLGDETNDDNLVIDGSESKKKSSREVV 272
Query: 305 TPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGI 364
TPLAH+SY+ QLE KK S+ Q+LKKL RNARKACPNGVS+PEWI+KSREIGGLPC LEGI
Sbjct: 273 TPLAHLSYADQLEQKKYSLMQILKKLPRNARKACPNGVSVPEWILKSREIGGLPCNLEGI 332
Query: 365 LGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASI 424
+ SP+VNGYRNKCEFS+G SL+ K TVGF LGNFREGVTAVEEPVDCPN+S IACKYA+I
Sbjct: 333 IESPIVNGYRNKCEFSIGNSLEGKVTVGFSLGNFREGVTAVEEPVDCPNISTIACKYAAI 392
Query: 425 FQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQV 484
FQEFLQ ++LPVWNRFKN GFWRQLTVREGRS G +D E + I+EVMLI QV
Sbjct: 393 FQEFLQHTELPVWNRFKNCGFWRQLTVREGRSNGNVVDAETFD------GIAEVMLIVQV 446
Query: 485 SSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSI 544
S+A+FD+A V++EF+RLA+AF GAT+ P+LPLTAL++QDHQG+SNVAP+DAPL L I
Sbjct: 447 STASFDNAQVDAEFKRLAQAFVTGATSHCPTLPLTALIVQDHQGISNVAPSDAPLHSLPI 506
Query: 545 PKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTL 604
D E + + + RIHD ISNLRF ISPT+FFQVNTLAAEKLYSL GDWA LGPDTL
Sbjct: 507 TAGDPERDVNISAADVRIHDYISNLRFSISPTSFFQVNTLAAEKLYSLAGDWACLGPDTL 566
Query: 605 LFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664
LFD+CCGTG IGLTLAHRVGMVIGIEMNA+AVSDAH+NAE NGIKNCRFVC+KAE V+GS
Sbjct: 567 LFDICCGTGAIGLTLAHRVGMVIGIEMNAAAVSDAHKNAENNGIKNCRFVCSKAEQVIGS 626
Query: 665 LLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCPEG 724
LLK+YL+ +E+ + S S ++PE+ C DP N S C E
Sbjct: 627 LLKEYLDVPKEQVDVPSIC------------GSVSDIPEDSACP--DPGNGENASPCSEN 672
Query: 725 SGKEPQSQLQKDCTSE-GNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
+ E ++++ K+ T E GN+ Q FKNVVAIVDPPR GLHPTVIK LRTH RL+RL++I
Sbjct: 673 NNLEIENEVPKESTPENGNTPVQQFKNVVAIVDPPRAGLHPTVIKALRTHTRLRRLVYI 731
>gi|30683900|ref|NP_180412.2| zinc finger CCCH domain-containing protein 24 [Arabidopsis
thaliana]
gi|75154217|sp|Q8L7S3.1|C3H24_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 24;
Short=AtC3H24
gi|22135822|gb|AAM91097.1| At2g28450/T1B3.3 [Arabidopsis thaliana]
gi|25090447|gb|AAN72304.1| At2g28450/T1B3.3 [Arabidopsis thaliana]
gi|330253030|gb|AEC08124.1| zinc finger CCCH domain-containing protein 24 [Arabidopsis
thaliana]
Length = 809
Score = 799 bits (2063), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/778 (55%), Positives = 533/778 (68%), Gaps = 96/778 (12%)
Query: 26 PLQNADDEQIQPSIPQSTDDVTTTAAEKRKR--EDVATEGPQSESAEPSPSPSLHPLHKT 83
P++ + +++ S +TD++ EKRKR ED T S++ +PSP KT
Sbjct: 28 PMETSSIDELPSSDSNATDNIEA-VGEKRKRADEDEKTNLESSDTKITTPSP----WWKT 82
Query: 84 SLCSYFRKVGTCCHGSTCRYAHGEEELRIRPDNTWDPTSERAKKARKLEDGDKCEAKEDA 143
SLCSYFR+ +C HG+ C+YAHGE ELR++PDNTWDPTSER KKA+ ++ E +E
Sbjct: 83 SLCSYFRREASCSHGNECKYAHGEAELRMKPDNTWDPTSERGKKAKAMK---MSEHEEKE 139
Query: 144 VEEVMMTEAV---VDGDGDGD-----QDVELSKCLVHLPRKWHSDNLKKFLADHGILYKS 195
+EV+ TE + +DGD G D+ LSKCLVHLP KW SD LKKFL + G+LYKS
Sbjct: 140 EDEVLFTEQMMESIDGDEGGGGSVSVVDLSLSKCLVHLPNKWQSDELKKFLGEQGVLYKS 199
Query: 196 AKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRSFDKNIKSPMTLSGN 255
AKK++GM VGFV FE+ EQL++ VE L+G ++ + LK+A+V+PR+FDKN +
Sbjct: 200 AKKRRGMIVGFVTFENAEQLQSGVEILDGKTVNSSNLKIADVLPRTFDKN---------D 250
Query: 256 AKQASESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLKVKSARDVVTPLAHMSYSVQ 315
A+++ VKSARD VTPLA++SY+ Q
Sbjct: 251 ARKS-------------------------------------VKSARDAVTPLAYLSYADQ 273
Query: 316 LEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRN 375
LE KK SI QMLKKL RNARKACPNG SLP+W++ SR+ GGL C LEGI+ SP+ NGYRN
Sbjct: 274 LEQKKTSIGQMLKKLARNARKACPNGNSLPQWVLTSRDRGGLACNLEGIIESPITNGYRN 333
Query: 376 KCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLP 435
KCEFSVG SLQ KPTVGF LG+F GVTAVEEPVDCPNVS+IA +YASIFQ+F++ S
Sbjct: 334 KCEFSVGLSLQGKPTVGFSLGSFCAGVTAVEEPVDCPNVSKIASQYASIFQKFIENSKFQ 393
Query: 436 VWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVN 495
VWNRF++SGFWRQLTVREGR PG N E I+ I+EVML+ QV D+A V
Sbjct: 394 VWNRFQHSGFWRQLTVREGRKPGV---FSNDEDAITR--IAEVMLMVQVCLTGSDEAEVA 448
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADG---EPE 552
+EFE LAKAFA GA ASSP+LPLT LV+Q+H G+SNVAP DAPL++L+IP +D + +
Sbjct: 449 TEFEELAKAFAEGARASSPTLPLTVLVVQNHSGISNVAPPDAPLQVLAIPISDNGTDQEQ 508
Query: 553 ESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGT 612
+N + EARIHD I+NLRF ISPTAFFQVNT+ AEKLYS+ GDWADLGPDTLLFDVCCGT
Sbjct: 509 TTNVLTEARIHDHINNLRFSISPTAFFQVNTVTAEKLYSIAGDWADLGPDTLLFDVCCGT 568
Query: 613 GTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GTIGLTLAHRVGMVIGIEMNASAV+DA RNA INGI NC+F+C+KAEDVM SLLK YL+
Sbjct: 569 GTIGLTLAHRVGMVIGIEMNASAVADAERNATINGISNCKFICSKAEDVMSSLLKQYLDV 628
Query: 673 LREED----EHASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCPEGSGK- 727
+ E+ +A++ NK+I EE +S +AD N P + +
Sbjct: 629 TQMEEAKPLSNANDDLNKQIPSTEEMTNSE----------------HVADQNLPPSNTQV 672
Query: 728 -EPQSQLQKDCTS-EGNSLAQP-FKNVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
E Q QKD +S E +P FKNVVAIVDPPR GLHP VIK LRTH RL+RL++I
Sbjct: 673 EELQDNEQKDSSSLEPEKTTKPQFKNVVAIVDPPRSGLHPAVIKALRTHPRLKRLVYI 730
>gi|334184534|ref|NP_001189623.1| zinc finger CCCH domain-containing protein 24 [Arabidopsis
thaliana]
gi|330253031|gb|AEC08125.1| zinc finger CCCH domain-containing protein 24 [Arabidopsis
thaliana]
Length = 804
Score = 789 bits (2038), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/771 (55%), Positives = 526/771 (68%), Gaps = 96/771 (12%)
Query: 26 PLQNADDEQIQPSIPQSTDDVTTTAAEKRKR--EDVATEGPQSESAEPSPSPSLHPLHKT 83
P++ + +++ S +TD++ EKRKR ED T S++ +PSP KT
Sbjct: 28 PMETSSIDELPSSDSNATDNIEA-VGEKRKRADEDEKTNLESSDTKITTPSP----WWKT 82
Query: 84 SLCSYFRKVGTCCHGSTCRYAHGEEELRIRPDNTWDPTSERAKKARKLEDGDKCEAKEDA 143
SLCSYFR+ +C HG+ C+YAHGE ELR++PDNTWDPTSER KKA+ ++ E +E
Sbjct: 83 SLCSYFRREASCSHGNECKYAHGEAELRMKPDNTWDPTSERGKKAKAMK---MSEHEEKE 139
Query: 144 VEEVMMTEAV---VDGDGDGDQ-----DVELSKCLVHLPRKWHSDNLKKFLADHGILYKS 195
+EV+ TE + +DGD G D+ LSKCLVHLP KW SD LKKFL + G+LYKS
Sbjct: 140 EDEVLFTEQMMESIDGDEGGGGSVSVVDLSLSKCLVHLPNKWQSDELKKFLGEQGVLYKS 199
Query: 196 AKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRSFDKNIKSPMTLSGN 255
AKK++GM VGFV FE+ EQL++ VE L+G ++ + LK+A+V+PR+FDKN +
Sbjct: 200 AKKRRGMIVGFVTFENAEQLQSGVEILDGKTVNSSNLKIADVLPRTFDKN---------D 250
Query: 256 AKQASESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLKVKSARDVVTPLAHMSYSVQ 315
A+++ VKSARD VTPLA++SY+ Q
Sbjct: 251 ARKS-------------------------------------VKSARDAVTPLAYLSYADQ 273
Query: 316 LEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRN 375
LE KK SI QMLKKL RNARKACPNG SLP+W++ SR+ GGL C LEGI+ SP+ NGYRN
Sbjct: 274 LEQKKTSIGQMLKKLARNARKACPNGNSLPQWVLTSRDRGGLACNLEGIIESPITNGYRN 333
Query: 376 KCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLP 435
KCEFSVG SLQ KPTVGF LG+F GVTAVEEPVDCPNVS+IA +YASIFQ+F++ S
Sbjct: 334 KCEFSVGLSLQGKPTVGFSLGSFCAGVTAVEEPVDCPNVSKIASQYASIFQKFIENSKFQ 393
Query: 436 VWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVN 495
VWNRF++SGFWRQLTVREGR PG N E I+ I+EVML+ QV D+A V
Sbjct: 394 VWNRFQHSGFWRQLTVREGRKPGV---FSNDEDAITR--IAEVMLMVQVCLTGSDEAEVA 448
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADG---EPE 552
+EFE LAKAFA GA ASSP+LPLT LV+Q+H G+SNVAP DAPL++L+IP +D + +
Sbjct: 449 TEFEELAKAFAEGARASSPTLPLTVLVVQNHSGISNVAPPDAPLQVLAIPISDNGTDQEQ 508
Query: 553 ESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGT 612
+N + EARIHD I+NLRF ISPTAFFQVNT+ AEKLYS+ GDWADLGPDTLLFDVCCGT
Sbjct: 509 TTNVLTEARIHDHINNLRFSISPTAFFQVNTVTAEKLYSIAGDWADLGPDTLLFDVCCGT 568
Query: 613 GTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GTIGLTLAHRVGMVIGIEMNASAV+DA RNA INGI NC+F+C+KAEDVM SLLK YL+
Sbjct: 569 GTIGLTLAHRVGMVIGIEMNASAVADAERNATINGISNCKFICSKAEDVMSSLLKQYLDV 628
Query: 673 LREED----EHASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCPEGSGK- 727
+ E+ +A++ NK+I EE +S +AD N P + +
Sbjct: 629 TQMEEAKPLSNANDDLNKQIPSTEEMTNSE----------------HVADQNLPPSNTQV 672
Query: 728 -EPQSQLQKDCTS-EGNSLAQP-FKNVVAIVDPPRGGLHPTVIKILRTHAR 775
E Q QKD +S E +P FKNVVAIVDPPR GLHP VIK LRTH R
Sbjct: 673 EELQDNEQKDSSSLEPEKTTKPQFKNVVAIVDPPRSGLHPAVIKALRTHPR 723
>gi|297822425|ref|XP_002879095.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297324934|gb|EFH55354.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 818
Score = 789 bits (2038), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/808 (53%), Positives = 536/808 (66%), Gaps = 108/808 (13%)
Query: 4 FPTETLNLPPPINGQDSTSHNEPLQNADDEQIQPSIPQSTDDVTTTAAEKRKREDVATEG 63
P T L PP +++ P+ + +++ PS + D EKRKR D E
Sbjct: 11 LPLPTKTLTPP-----ASAEPIPMDTSSIDEL-PSSDSNLTDNNEAVGEKRKRTD-EDEK 63
Query: 64 PQSESAEPSPSPSLHPLHKTSLCSYFRKVGTCCHGSTCRYAHGEEELRIRPDNTWDPTSE 123
P ES E +PS P KTSLCSYFR+ +C HGS C+YAHGE ELR++PDNTWDPTSE
Sbjct: 64 PNLESLETKITPS--PWWKTSLCSYFRREASCSHGSECKYAHGEAELRMKPDNTWDPTSE 121
Query: 124 RAKKARKLEDGDKCEAKEDAVEEVMMTEAV---VDGDGDGD-----QDVELSKCLVHLPR 175
R KK + ++ ++ E KED +EV+ TE + +DGD G D+ LSKCLVHLP
Sbjct: 122 RGKKVKAMKLSEQ-EEKED--DEVLFTEQMMESIDGDEGGGGSVSVVDLSLSKCLVHLPN 178
Query: 176 KWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235
KW SD LKKF + G+ YKSAKK++GM VGFV FE+ EQ+++ VE L+G ++ + LK+A
Sbjct: 179 KWQSDELKKFFGEQGVQYKSAKKRRGMIVGFVTFENAEQMQSGVEILDGKTVNSSNLKIA 238
Query: 236 NVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGL 295
+V+PR+FDKN +A+++
Sbjct: 239 DVLPRTFDKN---------DARKS------------------------------------ 253
Query: 296 KVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIG 355
VKSAR VTPLA +SY+ QLE KK SI QMLKKL RNARKACPNG SLP+W++ SR+ G
Sbjct: 254 -VKSARGAVTPLADLSYADQLEQKKTSIGQMLKKLARNARKACPNGNSLPQWVLTSRDRG 312
Query: 356 GLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVS 415
GL C LEGI+ SP+ NGYRNKCEFSVG SLQ KPTVGF LG+F GVTAVEEPVDCPNVS
Sbjct: 313 GLACNLEGIIESPITNGYRNKCEFSVGLSLQGKPTVGFSLGSFCAGVTAVEEPVDCPNVS 372
Query: 416 EIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNI 475
+IA +YASIFQ+F+++S L VWNRF++SGFWRQLTVREGR PG N E I+ I
Sbjct: 373 KIAVQYASIFQKFIEKSKLQVWNRFQHSGFWRQLTVREGRKPGV---FSNDEDAITR--I 427
Query: 476 SEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPA 535
+EVMLI QV D+ V +EFE +AKAFA GA ASSP+LPLT LV+Q+H G+SNVAP
Sbjct: 428 AEVMLIVQVCLTDSDETEVATEFEEMAKAFAEGARASSPTLPLTVLVVQNHSGISNVAPP 487
Query: 536 DAPLRLLSIPKAD---GEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSL 592
D+PL++L IP D + + +N + EARIHD I+NLRF ISPTAFFQVNT+ AEKLY++
Sbjct: 488 DSPLQVLPIPMLDNGTNQEQTTNALTEARIHDHINNLRFSISPTAFFQVNTVTAEKLYTI 547
Query: 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCR 652
GDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAV+DA RNA INGI NC+
Sbjct: 548 AGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVADAERNATINGISNCK 607
Query: 653 FVCAK---------AEDVMGSLLKDYLNPLREED----EHASEGSNKEITIAEEKDSSRD 699
F+C+K AE+VM SLLK YL+ E+ +A++ +K+I+ EE +S
Sbjct: 608 FICSKACILTITYLAENVMSSLLKQYLDVTEMEEAKPLSNANDDLDKQISSTEEMSNSE- 666
Query: 700 NVPENEGCSGQDPENDIADSNCPEGSGK--EPQSQLQKDCTS--EGNSLAQP-FKNVVAI 754
+AD N P + + E Q+ QKD +S E +P FKNVVAI
Sbjct: 667 ---------------HVADQNLPTTNSRVEELQNNEQKDISSSVEPEKSTKPQFKNVVAI 711
Query: 755 VDPPRGGLHPTVIKILRTHARLQRLLHI 782
VDPPR GLHP VIK LRTH RL+RL++I
Sbjct: 712 VDPPRSGLHPAVIKALRTHPRLKRLVYI 739
>gi|242072140|ref|XP_002446006.1| hypothetical protein SORBIDRAFT_06g000450 [Sorghum bicolor]
gi|241937189|gb|EES10334.1| hypothetical protein SORBIDRAFT_06g000450 [Sorghum bicolor]
Length = 862
Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/821 (51%), Positives = 512/821 (62%), Gaps = 145/821 (17%)
Query: 50 AAEKRKREDVATEGPQSESAEPSPSP---------------SLHPLHKTSLCSYFRKVGT 94
A EKRKRE EG S E +PS + HP+ KTSLCS+FR+ G
Sbjct: 21 AGEKRKRE----EGSVDASTEDAPSAPASTGSAEDAAGSGVARHPMWKTSLCSFFRRRGA 76
Query: 95 ----CCHGSTCRYAHGEEELRIRPDNTWDPTSERAKKARKLEDGDKCEAKEDAVEEVMMT 150
C HG +CRYAH EEELR RPD TWDPTS+RAKK RK+ EA+E+A EEV +
Sbjct: 77 GAEGCSHGESCRYAHTEEELRPRPDGTWDPTSDRAKKLRKVAA----EAQEEAEEEVTVD 132
Query: 151 EAVVDGDGDGDQDVELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFE 210
E +D KCLV LPR W +D LK FL + I Y +AKKKKGMTVGFV F+
Sbjct: 133 EQALD------------KCLVGLPRGWTADRLKSFLQEQEISYATAKKKKGMTVGFVTFQ 180
Query: 211 SVEQLKNAVEELEGISIGNKTLKVANVVPRSFDK-NIKSPMTLSGNAKQASESAVPGELA 269
SVEQL NAV+ L+ G K +K+ + RS K ++++P++ +G A + S E
Sbjct: 181 SVEQLTNAVQVLKENPSGGKEIKIVDANRRSHQKAHVEAPVSNTGTATENGSSPTNAEET 240
Query: 270 EAHASSNGHEDGNGNDEGLAGDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKK 329
A S + + +SARD VTPLAHM+Y QLEHKK S+AQ+LKK
Sbjct: 241 PAPESDSSSK------------------RSARDAVTPLAHMTYIDQLEHKKQSMAQILKK 282
Query: 330 LTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP 389
LTRNARKACP + LP+W++KS+EIGGLPCKLEGIL SP+VNGYRNKCEFSVGYSL+ K
Sbjct: 283 LTRNARKACPPAIPLPDWVLKSKEIGGLPCKLEGILESPVVNGYRNKCEFSVGYSLEGKK 342
Query: 390 TVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQL 449
TVGFMLGNFREGVTAVEEPV+CPNVSEI+CKYA +FQ+FLQ S P+W++ NSGFWRQL
Sbjct: 343 TVGFMLGNFREGVTAVEEPVNCPNVSEISCKYAQMFQDFLQSSGFPLWSKIDNSGFWRQL 402
Query: 450 TVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGA 509
TVREGR P + + +N +E ISEVMLI QV S D+A++ EF++L+ A GA
Sbjct: 403 TVREGRCPAEAVVSQN-----AESQISEVMLIVQVCSTGVDEALMKEEFDKLSAALIQGA 457
Query: 510 TASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNL 569
SP LPLT +V+QDH+G+SN AP D PL L +P D + D + RIHD ISNL
Sbjct: 458 ATCSPPLPLTTIVVQDHKGISNAAPTDCPLIPLLVPNGDQLDGTTED--KTRIHDHISNL 515
Query: 570 RFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGI 629
+F ISPTAFFQVNTLAAE+LY+L GDWA+L DTLLFDVCCGTGTIGLTLAHRVGMV+GI
Sbjct: 516 KFSISPTAFFQVNTLAAERLYTLAGDWANLNSDTLLFDVCCGTGTIGLTLAHRVGMVVGI 575
Query: 630 EMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEIT 689
EMN SAVSDAH+NA INGIKNCRFVC+KAEDVMG LL +YL GS ++
Sbjct: 576 EMNESAVSDAHKNALINGIKNCRFVCSKAEDVMGPLLTEYL------------GSPQQQA 623
Query: 690 IAEEKDSSRDNVPENE---GCSGQDPEN-DIADSNCPEGSGKEPQ--------------- 730
A E +S D+ +NE C+ D EN D + G G++P
Sbjct: 624 AASESNSEIDDTNKNEDTIDCTNCDGENIDSSKHRNDNGEGQQPMDTSVDYPTCASNEEV 683
Query: 731 ----------------SQLQKDC------------TSEGNSLAQ----------PFKNV- 751
+ +++C TS NSL Q P NV
Sbjct: 684 DGVNKVVDCSHDEHNVASGEQNCGEASLLNDKPIETSSDNSLEQGKACQDGSSNPNDNVL 743
Query: 752 ----------VAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
VAIVDPPR GLHPTVIK LRTH R++RL++I
Sbjct: 744 AANACQFKNVVAIVDPPRVGLHPTVIKALRTHPRIRRLVYI 784
>gi|38346207|emb|CAD39345.2| OSJNBa0094O15.14 [Oryza sativa Japonica Group]
gi|222628241|gb|EEE60373.1| hypothetical protein OsJ_13507 [Oryza sativa Japonica Group]
Length = 865
Score = 734 bits (1894), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/836 (50%), Positives = 513/836 (61%), Gaps = 131/836 (15%)
Query: 27 LQNADDEQIQPSIPQSTDDVTTTAAEKRKREDVATEGPQSESAEPSPSPSLHPLHKTSLC 86
++ D++ P P +D A EKRKRED A+ +A + + HP+ KTSLC
Sbjct: 3 MEMEDNKAPSPPSPMESD----VAGEKRKREDDASSSAVLAAAN-NTGGAQHPMWKTSLC 57
Query: 87 SYFRKVGT-----CCHGSTCRYAHGEEELRIRPDNTWDPTSERAKKARKLEDGDKCEAKE 141
S+FR+ C HG +CRYAH EEELR RPD TWDPTS+RAKK RK+
Sbjct: 58 SFFRRRAASSADGCSHGDSCRYAHSEEELRPRPDGTWDPTSDRAKKLRKV--------AA 109
Query: 142 DAVEEVMMTEAVVDGDGDGDQDVELSKCLVHLPRKWHSDNLKKFLADH------------ 189
D VEE ++T +D D L KCLV LPR W +D LK FL D
Sbjct: 110 DEVEEEVVT---ID-------DKALDKCLVGLPRGWANDRLKTFLQDKARTNYSSILPPA 159
Query: 190 ---GILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRSFDK-N 245
GI Y +AKKKKGMTVGFV FE++EQLKNA+E L G K +K+A+ RS K +
Sbjct: 160 LLLGISYATAKKKKGMTVGFVTFENIEQLKNAIEVLTENQSGGKEIKIADANRRSHQKLH 219
Query: 246 IKSPMTLSGNAKQ--ASESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLKVKSARDV 303
+ P++ +G + S PGE + A+ + KS RD
Sbjct: 220 TEKPVSDNGVTTENGTSVDVPPGETSAPEAAISNK-------------------KSVRDA 260
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
VTPLAHMSY+ QLEHKKNS+AQ+LK+LTRNARKACP G+ LP+W+ KS+EIGGLPCKLEG
Sbjct: 261 VTPLAHMSYNDQLEHKKNSVAQILKRLTRNARKACPTGIPLPDWVFKSKEIGGLPCKLEG 320
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
IL SP++NGYRNKCEFSVG+SL+ K TVGFMLGNFREGVTAVEEPVDCPNVSEI+CKYA
Sbjct: 321 ILESPVINGYRNKCEFSVGFSLEGKKTVGFMLGNFREGVTAVEEPVDCPNVSEISCKYAL 380
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
+FQ+FLQ S LPVWNR N GFWRQ TVREGR + + +E ISEVMLI Q
Sbjct: 381 MFQDFLQSSSLPVWNRVDNCGFWRQFTVREGRCQAQAV------AQNAENQISEVMLIVQ 434
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLS 543
V S DDAV+ EF++L A GA SP LPLT +V+QDH+G+SN APAD PL L
Sbjct: 435 VCSTGVDDAVMKDEFDKLTVALQQGAATCSPPLPLTTIVVQDHKGISNAAPADCPLIPLL 494
Query: 544 IPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDT 603
+PK D + V + RIHD I NL F ISPTAFFQVNTLAAE+LY+L GDWA+L T
Sbjct: 495 VPKVD---QSEGTVDKTRIHDHIGNLWFSISPTAFFQVNTLAAERLYTLAGDWANLNSGT 551
Query: 604 LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMG 663
LLFDVCCGTGTIGLTLAHRVGMV+GIEMN SAVSDA RNA ING+ NCRFVC KAEDVMG
Sbjct: 552 LLFDVCCGTGTIGLTLAHRVGMVVGIEMNESAVSDAERNALINGVSNCRFVCGKAEDVMG 611
Query: 664 SLLKDYLNPLREE---DEHASEGSNKEITIAEEKDSSRDNV----PENEGCSGQDPENDI 716
SLL +YL +++ E A G+ K+ + + +S +N+ +N+ Q +
Sbjct: 612 SLLTEYLGSPQQDIPVSEGAVSGTVKDEEVIDSSKNSGENLDSSMQKNDNGESQQLGDAP 671
Query: 717 ADS-----------------NCPEGSGKEPQSQLQKDCTSE------------------- 740
ADS N EGS E +D E
Sbjct: 672 ADSSSSAIDEIKGNSNDRVGNGLEGSHDEYNEVAGEDIHGEASLINESVDLKVSDCLEDR 731
Query: 741 -----GNSL---------AQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
G+S+ A F+++VAIVDPPR GLHPTVIK LRTH R++RL++I
Sbjct: 732 KTSDDGSSISNNDVTAATACQFEDIVAIVDPPRVGLHPTVIKALRTHPRIRRLVYI 787
>gi|414588199|tpg|DAA38770.1| TPA: hypothetical protein ZEAMMB73_141962 [Zea mays]
Length = 853
Score = 734 bits (1894), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/809 (51%), Positives = 503/809 (62%), Gaps = 123/809 (15%)
Query: 50 AAEKRKREDVATEGPQSESAEPSPSPSL------------HPLHKTSLCSYFRKVGT--- 94
A EKRKRE+ + + E A +P+ + HP+ KTSLCS+FR+ G
Sbjct: 14 AGEKRKREESSLDA-SIEDAPSAPASTCSAEDAAGSDVARHPMWKTSLCSFFRRRGAGAE 72
Query: 95 -CCHGSTCRYAHGEEELRIRPDNTWDPTSERAKKARKLEDGDKCEAKEDAVEEVMMTEAV 153
C HG +CRYAH EEELR RPD TWDPTS+RAK+ RK+ +E E
Sbjct: 73 GCSHGDSCRYAHTEEELRPRPDGTWDPTSDRAKELRKVAA---------EAQEEAEEEVT 123
Query: 154 VDGDGDGDQDVELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVE 213
VD + L KCLV LPR W +D LK L D GI Y +AKKKKGMTVGFV F+SVE
Sbjct: 124 VD-------EQSLDKCLVGLPRGWTADRLKSLLQDQGISYATAKKKKGMTVGFVTFQSVE 176
Query: 214 QLKNAVEELEGISIGNKTLKVANVVPRSFDK-NIKSPMTLSGNAKQ-ASESAVPGELAEA 271
QL NAV+ L+ K +K+ + RS K + +P++ +G A + S P E
Sbjct: 177 QLTNAVQVLKENPSDGKQIKIVDANRRSHQKAHAGAPVSNTGTATENGSSPTTPAEETSV 236
Query: 272 HASSNGHEDGNGNDEGLAGDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLT 331
S + + G ARD VTPLAHM+Y QLEHKK S+AQ+LKKLT
Sbjct: 237 PESVSSSKKG------------------ARDAVTPLAHMTYIDQLEHKKQSMAQILKKLT 278
Query: 332 RNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTV 391
RNARKACP + P+W+ KS+EIGGLPCK EGIL SP+VNGYRNKCEFSVGYSL+ K TV
Sbjct: 279 RNARKACPPTIPHPDWVFKSKEIGGLPCKFEGILESPVVNGYRNKCEFSVGYSLEGKKTV 338
Query: 392 GFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTV 451
GFMLGNFREGVTAVEEP +CPNVSEI+CKYA +FQ+FLQ S P+W++ NSGFWRQLTV
Sbjct: 339 GFMLGNFREGVTAVEEPENCPNVSEISCKYAKMFQDFLQSSSFPLWSKIDNSGFWRQLTV 398
Query: 452 REGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATA 511
REGR P + + +N +E ISEVMLI QV S + D+A++ EF++L+ A GA
Sbjct: 399 REGRCPAEAVVSQN-----AESQISEVMLIVQVCSTSVDEALMKEEFDKLSAALVQGAAT 453
Query: 512 SSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRF 571
SP LPLT +V+QDH+G+SN AP D PL L +PK D S D + RIHD ISNL+F
Sbjct: 454 CSPPLPLTTIVVQDHKGISNAAPTDCPLIPLLVPKGDKLDGTSED--KTRIHDHISNLKF 511
Query: 572 CISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEM 631
ISPTAFFQVNTLAAE+LY+L GDWA+L DTLLFDVCCGTGTIGLTLA RVGMV+GIEM
Sbjct: 512 SISPTAFFQVNTLAAERLYALAGDWANLNSDTLLFDVCCGTGTIGLTLAQRVGMVVGIEM 571
Query: 632 NASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEI--- 688
N SAVSDAHRNA INGIKNCRFVC KAEDVMG LL +YL + + A+ SN EI
Sbjct: 572 NESAVSDAHRNALINGIKNCRFVCGKAEDVMGPLLTEYLG--SPQQQAAASKSNSEIDDT 629
Query: 689 -----------TIAEEKDSSRDNVPENEGCSGQDP------------------------- 712
E DSS+ ++ GQ P
Sbjct: 630 SKTEDMIGCASYDGENIDSSKQ---RHDNAEGQQPMDTSVDHPTCASEVDGMDVVDCNHD 686
Query: 713 ENDIA--DSNCPEGS---GKE---------PQSQLQKDCTSEGN-----SLAQPFKNVVA 753
EN++A + NC E S GK Q + KD +S N + A FKNVVA
Sbjct: 687 ENNVASGEQNCGEASLINGKPIETSSDNSLEQGKTCKDGSSSPNNNVLAANACQFKNVVA 746
Query: 754 IVDPPRGGLHPTVIKILRTHARLQRLLHI 782
IVDPPR GLHPTVIK LRTH R++RL++I
Sbjct: 747 IVDPPRVGLHPTVIKALRTHPRIRRLVYI 775
>gi|357167086|ref|XP_003580997.1| PREDICTED: zinc finger CCCH domain-containing protein 24-like
[Brachypodium distachyon]
Length = 801
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/768 (52%), Positives = 485/768 (63%), Gaps = 110/768 (14%)
Query: 80 LHKTSLCSYFRKVGT----CCHGSTCRYAHGEEELRIRPDNTWDPTSERAKKARKLEDGD 135
+ KTSLCSYFR+ G C HG CRYAH +EELR RPD TWDPTS+RAKK RK+
Sbjct: 1 MSKTSLCSYFRRHGAGPDGCRHGEACRYAHTDEELRPRPDGTWDPTSDRAKKLRKV---- 56
Query: 136 KCEAKEDAVEEVMMTEAVVDGDGDGDQDVELSKCLVHLPRKWHSDNLKKFLADHGILYKS 195
+ E E +V D D L KCLV LPR W +D LK FL + GI Y +
Sbjct: 57 -------SAEAEEADEEMVTFD-----DKSLDKCLVGLPRAWVTDRLKTFLQEQGISYAT 104
Query: 196 AKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRSFDK-NIKSPMT--- 251
AKKKKGMTVGFV F +VE+LKNAVE LE S G K +K+A+ RS K + + P+T
Sbjct: 105 AKKKKGMTVGFVTFGTVEELKNAVEVLENQS-GGKEIKIADANRRSHQKSHTEGPVTDNG 163
Query: 252 -LSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLKVKSARDVVTPLAHM 310
+GN+ A +A + EA A+S K+ RD VTPLAHM
Sbjct: 164 AATGNSSVAPATAEGTPMPEAEAASK---------------------KTVRDAVTPLAHM 202
Query: 311 SYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLV 370
+Y+ QLEHKKNS+AQ+LKKLTRNA+KACP V P+W+ KS++IGGLPCKLEGIL SP++
Sbjct: 203 TYNDQLEHKKNSVAQLLKKLTRNAKKACPADVPNPDWVFKSKQIGGLPCKLEGILESPVI 262
Query: 371 NGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQ 430
+GYRNKCEFS G+SL+ K TVGFMLGNFREGVTAVEEPVDCPNVS +ACKYAS+FQ+FLQ
Sbjct: 263 DGYRNKCEFSAGHSLEGKKTVGFMLGNFREGVTAVEEPVDCPNVSGLACKYASMFQDFLQ 322
Query: 431 QSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFD 490
S LPVWNR NSGFWRQ TVREGRSP + + + +E I+EVMLI QV S D
Sbjct: 323 LSSLPVWNRMDNSGFWRQFTVREGRSPPQAVVAHD-----AETQIAEVMLIVQVCSTGVD 377
Query: 491 DAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGE 550
+ ++ E ++L+ GA P LPLT +V+QDH+G+SNVA AD PL L +PK D
Sbjct: 378 EVLMKDELDKLSTTLVRGAATCLPPLPLTTIVVQDHKGISNVAAADCPLIPLLVPKVDQS 437
Query: 551 PEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCC 610
EE+ D + RIHD ISNLRF ISPTAFFQVNTLAAE+LY+L GDWA+L DTLLFDVCC
Sbjct: 438 EEEAVD--KTRIHDYISNLRFSISPTAFFQVNTLAAERLYTLAGDWANLNSDTLLFDVCC 495
Query: 611 GTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDY- 669
GTGTIGLTLAHRVGMV+GIEMN SAV DA RNA ING+KNC FVC KAEDVMGSLL +Y
Sbjct: 496 GTGTIGLTLAHRVGMVVGIEMNESAVLDARRNALINGVKNCCFVCGKAEDVMGSLLTEYL 555
Query: 670 --------------------------------LNPLREEDEHASEGSNKEIT------IA 691
L+ L E++++ K+I+ ++
Sbjct: 556 GSPQQDIADSESNSEVGPTGKKEDTVSGNEENLDSLTEKNDNGESPQPKDISTDHPTRVS 615
Query: 692 EEKDSSRDNVPENEGCSGQDPENDIADSNCPEGSGKEPQSQLQK--DC------------ 737
+E + DN G + I N E S +S K DC
Sbjct: 616 DEANGGSDNRGSENLEGGHEYNEAIRKQNSEEASLINAESLDTKAADCLEHTKKSKDDSS 675
Query: 738 ---TSEGNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
TS + A FKN VAIVDPPR GLHPTVIK LRTH R++RL++I
Sbjct: 676 ISKTSVLPTGASQFKNFVAIVDPPRVGLHPTVIKALRTHPRIRRLVYI 723
>gi|4432832|gb|AAD20681.1| putative RNA methyltransferase [Arabidopsis thaliana]
Length = 850
Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/829 (49%), Positives = 519/829 (62%), Gaps = 157/829 (18%)
Query: 26 PLQNADDEQIQPSIPQSTDDVTTTAAEKRKR--EDVATEGPQSESAEPSPSPSLHPLHKT 83
P++ + +++ S +TD++ EKRKR ED T S++ +PSP KT
Sbjct: 28 PMETSSIDELPSSDSNATDNIEA-VGEKRKRADEDEKTNLESSDTKITTPSP----WWKT 82
Query: 84 SLCSYFRKVGTCCHGSTCRYAHGEEELRIRPDNTWDPTSERAKKARKLEDGDKCEAKEDA 143
SLCSYFR+ +C HG+ C+YAHGE ELR++PDNTWDPTSER KKA+ ++ E +E
Sbjct: 83 SLCSYFRREASCSHGNECKYAHGEAELRMKPDNTWDPTSERGKKAKAMK---MSEHEEKE 139
Query: 144 VEEVMMTEAV---VDGDGDGD-----QDVELSKCLVHLPRKWHSDNLKKFLADHGILYKS 195
+EV+ TE + +DGD G D+ LSKCLVHLP KW SD LKKFL + G+LYKS
Sbjct: 140 EDEVLFTEQMMESIDGDEGGGGSVSVVDLSLSKCLVHLPNKWQSDELKKFLGEQGVLYKS 199
Query: 196 AKKKKGMTVGFVKFESVEQLKNAVEE------------LEGISIGNKTLKVANVVPRSFD 243
AKK++GM VGFV FE+ EQL++ VE L+G ++ + LK+A+V+PR+FD
Sbjct: 200 AKKRRGMIVGFVTFENAEQLQSGVERMLYRNVFNVLQILDGKTVNSSNLKIADVLPRTFD 259
Query: 244 KNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLKVKSARDV 303
KN +A+++ VKSARD
Sbjct: 260 KN---------DARKS-------------------------------------VKSARDA 273
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWI--MKSREI------- 354
VTPLA++SY+ QLE KK SI QMLKKL R+ V L E + M+ + +
Sbjct: 274 VTPLAYLSYADQLEQKKTSIGQMLKKLVRSF-------VFLFELVRGMRVKLVQMGIHFH 326
Query: 355 -GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPN 413
G L + EGI+ SP+ NGYRNKCEFSVG SLQ KPTVGF LG+F GVTAVEEPVDCPN
Sbjct: 327 NGSLHRETEGIIESPITNGYRNKCEFSVGLSLQGKPTVGFSLGSFCAGVTAVEEPVDCPN 386
Query: 414 VSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEV 473
VS+IA +YASIFQ+F++ S VWNRF++SGFWRQLTVREGR PG N E I+
Sbjct: 387 VSKIASQYASIFQKFIENSKFQVWNRFQHSGFWRQLTVREGRKPGV---FSNDEDAITR- 442
Query: 474 NISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVA 533
I+EVML+ QV + V +EFE LAKAFA GA ASSP+LPLT LV+Q+H G+SNVA
Sbjct: 443 -IAEVMLMVQVCVL---NGKVATEFEELAKAFAEGARASSPTLPLTVLVVQNHSGISNVA 498
Query: 534 PADAPLRLLSIPKADG---EPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLY 590
P DAPL++L+IP +D + + +N + EARIHD I+NLRF ISPTAFFQVNT+ AEKLY
Sbjct: 499 PPDAPLQVLAIPISDNGTDQEQTTNVLTEARIHDHINNLRFSISPTAFFQVNTVTAEKLY 558
Query: 591 SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKN 650
S+ GDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAV+DA RNA INGI N
Sbjct: 559 SIAGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVADAERNATINGISN 618
Query: 651 CRFVCAK-----------------------------AEDVMGSLLKDYLNPLREED---- 677
C+F+C+K AEDVM SLLK YL+ + E+
Sbjct: 619 CKFICSKACILTVTYFVVGSIVLICLHGSSVGFVVQAEDVMSSLLKQYLDVTQMEEAKPL 678
Query: 678 EHASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCPEGSGK--EPQSQLQK 735
+A++ NK+I EE +S +AD N P + + E Q QK
Sbjct: 679 SNANDDLNKQIPSTEEMTNSE----------------HVADQNLPPSNTQVEELQDNEQK 722
Query: 736 DCTS-EGNSLAQP-FKNVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
D +S E +P FKNVVAIVDPPR GLHP VIK LRTH RL+RL++I
Sbjct: 723 DSSSLEPEKTTKPQFKNVVAIVDPPRSGLHPAVIKALRTHPRLKRLVYI 771
>gi|414588198|tpg|DAA38769.1| TPA: hypothetical protein ZEAMMB73_141962 [Zea mays]
Length = 764
Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/793 (51%), Positives = 489/793 (61%), Gaps = 123/793 (15%)
Query: 50 AAEKRKREDVATEGPQSESAEPSPSPSL------------HPLHKTSLCSYFRKVGT--- 94
A EKRKRE+ + + E A +P+ + HP+ KTSLCS+FR+ G
Sbjct: 14 AGEKRKREESSLDA-SIEDAPSAPASTCSAEDAAGSDVARHPMWKTSLCSFFRRRGAGAE 72
Query: 95 -CCHGSTCRYAHGEEELRIRPDNTWDPTSERAKKARKLEDGDKCEAKEDAVEEVMMTEAV 153
C HG +CRYAH EEELR RPD TWDPTS+RAK+ RK+ +E E
Sbjct: 73 GCSHGDSCRYAHTEEELRPRPDGTWDPTSDRAKELRKVAA---------EAQEEAEEEVT 123
Query: 154 VDGDGDGDQDVELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVE 213
VD + L KCLV LPR W +D LK L D GI Y +AKKKKGMTVGFV F+SVE
Sbjct: 124 VD-------EQSLDKCLVGLPRGWTADRLKSLLQDQGISYATAKKKKGMTVGFVTFQSVE 176
Query: 214 QLKNAVEELEGISIGNKTLKVANVVPRSFDK-NIKSPMTLSGNAKQ-ASESAVPGELAEA 271
QL NAV+ L+ K +K+ + RS K + +P++ +G A + S P E
Sbjct: 177 QLTNAVQVLKENPSDGKQIKIVDANRRSHQKAHAGAPVSNTGTATENGSSPTTPAEETSV 236
Query: 272 HASSNGHEDGNGNDEGLAGDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLT 331
S + + G ARD VTPLAHM+Y QLEHKK S+AQ+LKKLT
Sbjct: 237 PESVSSSKKG------------------ARDAVTPLAHMTYIDQLEHKKQSMAQILKKLT 278
Query: 332 RNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTV 391
RNARKACP + P+W+ KS+EIGGLPCK EGIL SP+VNGYRNKCEFSVGYSL+ K TV
Sbjct: 279 RNARKACPPTIPHPDWVFKSKEIGGLPCKFEGILESPVVNGYRNKCEFSVGYSLEGKKTV 338
Query: 392 GFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTV 451
GFMLGNFREGVTAVEEP +CPNVSEI+CKYA +FQ+FLQ S P+W++ NSGFWRQLTV
Sbjct: 339 GFMLGNFREGVTAVEEPENCPNVSEISCKYAKMFQDFLQSSSFPLWSKIDNSGFWRQLTV 398
Query: 452 REGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATA 511
REGR P + + +N +E ISEVMLI QV S + D+A++ EF++L+ A GA
Sbjct: 399 REGRCPAEAVVSQN-----AESQISEVMLIVQVCSTSVDEALMKEEFDKLSAALVQGAAT 453
Query: 512 SSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRF 571
SP LPLT +V+QDH+G+SN AP D PL L +PK D S D + RIHD ISNL+F
Sbjct: 454 CSPPLPLTTIVVQDHKGISNAAPTDCPLIPLLVPKGDKLDGTSED--KTRIHDHISNLKF 511
Query: 572 CISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEM 631
ISPTAFFQVNTLAAE+LY+L GDWA+L DTLLFDVCCGTGTIGLTLA RVGMV+GIEM
Sbjct: 512 SISPTAFFQVNTLAAERLYALAGDWANLNSDTLLFDVCCGTGTIGLTLAQRVGMVVGIEM 571
Query: 632 NASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEI--- 688
N SAVSDAHRNA INGIKNCRFVC KAEDVMG LL +YL + + A+ SN EI
Sbjct: 572 NESAVSDAHRNALINGIKNCRFVCGKAEDVMGPLLTEYLG--SPQQQAAASKSNSEIDDT 629
Query: 689 -----------TIAEEKDSSRDNVPENEGCSGQDP------------------------- 712
E DSS+ ++ GQ P
Sbjct: 630 SKTEDMIGCASYDGENIDSSKQ---RHDNAEGQQPMDTSVDHPTCASEVDGMDVVDCNHD 686
Query: 713 ENDIA--DSNCPEGS---GKE---------PQSQLQKDCTSEGN-----SLAQPFKNVVA 753
EN++A + NC E S GK Q + KD +S N + A FKNVVA
Sbjct: 687 ENNVASGEQNCGEASLINGKPIETSSDNSLEQGKTCKDGSSSPNNNVLAANACQFKNVVA 746
Query: 754 IVDPPRGGLHPTV 766
IVDPPR GLHPTV
Sbjct: 747 IVDPPRVGLHPTV 759
>gi|413917815|gb|AFW57747.1| hypothetical protein ZEAMMB73_428540 [Zea mays]
Length = 695
Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust.
Identities = 342/647 (52%), Positives = 416/647 (64%), Gaps = 80/647 (12%)
Query: 186 LADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRSFDKN 245
+A GI Y AKKKKGMTVGFV F+SVEQL NAV+ L+ G K +K+ + RS K
Sbjct: 1 MALQGISYAIAKKKKGMTVGFVTFQSVEQLTNAVQILKKNPSGGKEIKIVDANRRSHQKA 60
Query: 246 -----IKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLKVKSA 300
+ + T + N + A + E+ +SS K A
Sbjct: 61 HDGALVSNTGTTTENGSSPTTPAEETSVLESVSSSK---------------------KGA 99
Query: 301 RDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCK 360
RD VTPLA+M+Y QLEHK S+AQ+LKKLTRNARKACP + P+W+ KS+EIGGLPCK
Sbjct: 100 RDAVTPLANMTYIDQLEHKNQSMAQILKKLTRNARKACPPAIPHPDWVFKSKEIGGLPCK 159
Query: 361 LEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
EGIL SP+VNGYRNKCEFSVGYSL+ K TVGFMLGNFREGVTAVEEPV+CPNVSEI+CK
Sbjct: 160 FEGILESPVVNGYRNKCEFSVGYSLEGKKTVGFMLGNFREGVTAVEEPVNCPNVSEISCK 219
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
YA +FQ+FLQ S P+W+R NSGFWRQLTVREGR P + + +N +E ISEVML
Sbjct: 220 YAQMFQDFLQPSSFPLWSRIDNSGFWRQLTVREGRCPAEAVVSQN-----AESQISEVML 274
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
I QV S D+A++ EF++L+ GA SP LPLT +V+QDH+G+SN AP D PL
Sbjct: 275 IVQVCSTGVDEALMKEEFDKLSAILIQGAATCSPPLPLTTIVVQDHKGISNAAPTDCPLI 334
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
L +PK D + D + RIHD ISNL+F +SPTAFFQVNTLAAE+LY+L GDWA+L
Sbjct: 335 PLLVPKGDQLDGTTEDKI--RIHDHISNLKFSLSPTAFFQVNTLAAERLYTLAGDWANLN 392
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
DTLLFDVCCGTGTIGLTLA VGMV+GIEMN SAVS+A RNA +NGIKNCRFVC KAED
Sbjct: 393 SDTLLFDVCCGTGTIGLTLAQHVGMVVGIEMNESAVSNACRNALVNGIKNCRFVCGKAED 452
Query: 661 VMGSLLKDYLNPLREEDEHASEGSNKEITIA--------------EEKDSSRDNVPENEG 706
VMG LL +YL + + A+ SN EI A E DSS+ EG
Sbjct: 453 VMGPLLTEYLG--SPQQQAAASKSNSEIDDASKNEDTIGCASYDGENIDSSKQRNDNAEG 510
Query: 707 ------------CSGQDPENDIA--DSNCPEGS--GKEP----------QSQLQKDCTSE 740
C+ + EN++A + NC E S +P Q + KD +S
Sbjct: 511 QQPMGASVDHPTCASEVDENNVASGEQNCGEASLVNDKPIETASDNSLEQGKACKDGSSS 570
Query: 741 GN-----SLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
N + A FKNVVAIVD PR GL PTVIK LRTH R++RL+++
Sbjct: 571 PNNNVLAANACQFKNVVAIVDSPRVGLRPTVIKALRTHPRIRRLVYV 617
>gi|413917814|gb|AFW57746.1| hypothetical protein ZEAMMB73_428540 [Zea mays]
Length = 606
Score = 595 bits (1534), Expect = e-167, Method: Compositional matrix adjust.
Identities = 333/631 (52%), Positives = 402/631 (63%), Gaps = 80/631 (12%)
Query: 186 LADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRSFDKN 245
+A GI Y AKKKKGMTVGFV F+SVEQL NAV+ L+ G K +K+ + RS K
Sbjct: 1 MALQGISYAIAKKKKGMTVGFVTFQSVEQLTNAVQILKKNPSGGKEIKIVDANRRSHQKA 60
Query: 246 -----IKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLKVKSA 300
+ + T + N + A + E+ +SS K A
Sbjct: 61 HDGALVSNTGTTTENGSSPTTPAEETSVLESVSSSK---------------------KGA 99
Query: 301 RDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCK 360
RD VTPLA+M+Y QLEHK S+AQ+LKKLTRNARKACP + P+W+ KS+EIGGLPCK
Sbjct: 100 RDAVTPLANMTYIDQLEHKNQSMAQILKKLTRNARKACPPAIPHPDWVFKSKEIGGLPCK 159
Query: 361 LEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
EGIL SP+VNGYRNKCEFSVGYSL+ K TVGFMLGNFREGVTAVEEPV+CPNVSEI+CK
Sbjct: 160 FEGILESPVVNGYRNKCEFSVGYSLEGKKTVGFMLGNFREGVTAVEEPVNCPNVSEISCK 219
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
YA +FQ+FLQ S P+W+R NSGFWRQLTVREGR P + + +N +E ISEVML
Sbjct: 220 YAQMFQDFLQPSSFPLWSRIDNSGFWRQLTVREGRCPAEAVVSQN-----AESQISEVML 274
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
I QV S D+A++ EF++L+ GA SP LPLT +V+QDH+G+SN AP D PL
Sbjct: 275 IVQVCSTGVDEALMKEEFDKLSAILIQGAATCSPPLPLTTIVVQDHKGISNAAPTDCPLI 334
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
L +PK D + D + RIHD ISNL+F +SPTAFFQVNTLAAE+LY+L GDWA+L
Sbjct: 335 PLLVPKGDQLDGTTEDKI--RIHDHISNLKFSLSPTAFFQVNTLAAERLYTLAGDWANLN 392
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
DTLLFDVCCGTGTIGLTLA VGMV+GIEMN SAVS+A RNA +NGIKNCRFVC KAED
Sbjct: 393 SDTLLFDVCCGTGTIGLTLAQHVGMVVGIEMNESAVSNACRNALVNGIKNCRFVCGKAED 452
Query: 661 VMGSLLKDYLNPLREEDEHASEGSNKEITIA--------------EEKDSSRDNVPENEG 706
VMG LL +YL + + A+ SN EI A E DSS+ EG
Sbjct: 453 VMGPLLTEYLG--SPQQQAAASKSNSEIDDASKNEDTIGCASYDGENIDSSKQRNDNAEG 510
Query: 707 ------------CSGQDPENDIA--DSNCPEGS--GKEP----------QSQLQKDCTSE 740
C+ + EN++A + NC E S +P Q + KD +S
Sbjct: 511 QQPMGASVDHPTCASEVDENNVASGEQNCGEASLVNDKPIETASDNSLEQGKACKDGSSS 570
Query: 741 GN-----SLAQPFKNVVAIVDPPRGGLHPTV 766
N + A FKNVVAIVD PR GL PTV
Sbjct: 571 PNNNVLAANACQFKNVVAIVDSPRVGLRPTV 601
>gi|218194201|gb|EEC76628.1| hypothetical protein OsI_14559 [Oryza sativa Indica Group]
Length = 805
Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust.
Identities = 339/711 (47%), Positives = 409/711 (57%), Gaps = 135/711 (18%)
Query: 27 LQNADDEQIQPSIPQSTDDVTTTAAEKRKREDVATEGPQSESAEPSPSPSLHPLHKTSLC 86
++ D++ P P +D A EKRKRED A+ +A + + HP+ KTSLC
Sbjct: 3 MEMEDNKAPSPPSPMESD----VAEEKRKREDDASSSAVLAAAN-NTGGAQHPMWKTSLC 57
Query: 87 SYFRKVGT-----CCHGSTCRYAHGEEELRIRPDNTWDPTSERAKKARKLEDGDKCEAKE 141
S+FR+ C HG +CRYAH EEELR RPD TWDPTS+RAKK RK+
Sbjct: 58 SFFRRRAASSADGCSHGDSCRYAHSEEELRPRPDGTWDPTSDRAKKLRKV--------AA 109
Query: 142 DAVEEVMMTEAVVDGDGDGDQDVELSKCLVHLPRKWHSDNLKKFLADH------------ 189
D VEE ++T +D D L KCLV LPR W +D LK FL D
Sbjct: 110 DEVEEEVVT---ID-------DKALDKCLVGLPRGWANDRLKTFLQDKARTNYSSILPPA 159
Query: 190 ---GILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRSFDK-N 245
GI Y +AKKKKGMTVGFV FE++EQLKNA+E L G K +K+A+ RS K +
Sbjct: 160 LLLGISYATAKKKKGMTVGFVTFENIEQLKNAIEVLTENQSGGKEIKIADANRRSHQKLH 219
Query: 246 IKSPMTLSGNAKQ--ASESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLKVKSARDV 303
+ P++ +G + S PGE + A+ + KS RD
Sbjct: 220 TEKPVSDNGVTTENGTSVDVPPGETSAPEAAISNK-------------------KSVRDA 260
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
VTPLAHMSY+ QLEHK NS+AQ+LK+LTRNARKACP G+ LP+W+ KS+EIGGLPCKLEG
Sbjct: 261 VTPLAHMSYNDQLEHKNNSVAQILKRLTRNARKACPTGIPLPDWVFKSKEIGGLPCKLEG 320
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
IL SP++NGYRNKCEFSVG+SL+ K TV REG C+ +
Sbjct: 321 ILESPVINGYRNKCEFSVGFSLEGKKTV-------REG----------------RCRAQA 357
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
+ Q N E I SEVMLI Q
Sbjct: 358 VAQ--------------------------------------NAETQI-----SEVMLIVQ 374
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLS 543
V S DDAV+ EF++L A GA SP LPLT +V+QDH+G+SN APAD PL L
Sbjct: 375 VCSTGVDDAVMKDEFDKLTVALQQGAATCSPPLPLTTIVVQDHKGISNAAPADCPLIPLL 434
Query: 544 IPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDT 603
+PK D + V + RIHD I NL F ISPTAFFQVNTLAAE+LY+L GDWA+L T
Sbjct: 435 VPKVD---QSEGTVDKTRIHDHIGNLWFSISPTAFFQVNTLAAERLYTLAGDWANLNSGT 491
Query: 604 LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMG 663
LLFDVCCGTGTIGLTLAHRVGMV+GIEMN SAVSDA RNA ING+ NCRFVC KAEDVMG
Sbjct: 492 LLFDVCCGTGTIGLTLAHRVGMVVGIEMNESAVSDAERNALINGVSNCRFVCGKAEDVMG 551
Query: 664 SLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPEN 714
SLL +YL ++D SEG+ EE S N EN S Q +N
Sbjct: 552 SLLTEYLGS-PQQDIPVSEGAVSGTVKDEEVIDSSKNSGENLDSSMQKNDN 601
Score = 316 bits (810), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 196/430 (45%), Positives = 243/430 (56%), Gaps = 80/430 (18%)
Query: 417 IACKYASIFQEFLQQSDLPVWNRFKNS-----GFWRQ--LTVREGRSPGKPLDVENLEVN 469
+ CK I + PV N ++N GF + TVREGR + +
Sbjct: 314 LPCKLEGILES-------PVINGYRNKCEFSVGFSLEGKKTVREGRCRAQAV------AQ 360
Query: 470 ISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGV 529
+E ISEVMLI QV S DDAV+ EF++L A GA SP LPLT +V+QDH+G+
Sbjct: 361 NAETQISEVMLIVQVCSTGVDDAVMKDEFDKLTVALQQGAATCSPPLPLTTIVVQDHKGI 420
Query: 530 SNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKL 589
SN APAD PL L +PK D + V + RIHD I NL F ISPTAFFQVNTLAAE+L
Sbjct: 421 SNAAPADCPLIPLLVPKVD---QSEGTVDKTRIHDHIGNLWFSISPTAFFQVNTLAAERL 477
Query: 590 YSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIK 649
Y+L GDWA+L TLLFDVCCGTGTIGLTLAHRVGMV+GIEMN SAVSDA RNA ING+
Sbjct: 478 YTLAGDWANLNSGTLLFDVCCGTGTIGLTLAHRVGMVVGIEMNESAVSDAERNALINGVS 537
Query: 650 NCRFVCAKAEDVMGSLLKDYLNPLREE---DEHASEGSNKEITIAEEKDSSRDNV----P 702
NCRFVC KAEDVMGSLL +YL +++ E A G+ K+ + + +S +N+
Sbjct: 538 NCRFVCGKAEDVMGSLLTEYLGSPQQDIPVSEGAVSGTVKDEEVIDSSKNSGENLDSSMQ 597
Query: 703 ENEGCSGQDPENDIADS-----------------NCPEGSGKEPQSQLQKDCTSE----- 740
+N+ Q + ADS N EGS E +D E
Sbjct: 598 KNDNGKSQQLGDAPADSSSSAIDEIKGNSNDRVGNGLEGSHDEYNEVAGEDIHGEASLIN 657
Query: 741 -------------------GNSL---------AQPFKNVVAIVDPPRGGLHPTVIKILRT 772
G+S+ A F+++VAIVDPPR GLHPTVIK LRT
Sbjct: 658 ESVDLKVSDCLEDRKTSDDGSSISNNDVTAATACQFEDIVAIVDPPRVGLHPTVIKALRT 717
Query: 773 HARLQRLLHI 782
H R++RL++I
Sbjct: 718 HPRIRRLVYI 727
>gi|168039167|ref|XP_001772070.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676671|gb|EDQ63151.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 764
Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust.
Identities = 313/714 (43%), Positives = 409/714 (57%), Gaps = 121/714 (16%)
Query: 75 PSLHPLHKTSLCSYFRKVGTCCHGSTCRYAHGEEELRIRPDNTWDPTSERAKKARKLEDG 134
P+ + KTSLCSYFRK G C HG C++AHGE EL+ RPD +WDPTSER KK
Sbjct: 88 PANPAIAKTSLCSYFRKKG-CNHGENCKFAHGESELQQRPDGSWDPTSERGKK------- 139
Query: 135 DKCEAKEDAVEEVMMTEAVVDGDGDGDQDVELSKCLVHLPRKWHSDNLKKFLADHGILYK 194
KED V + KCLV++P W LK FL + G+ Y
Sbjct: 140 -----KEDKVSTEEQSSEES----------RYRKCLVNIPMNWSQQKLKSFLDEKGVTYS 184
Query: 195 SAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRSFDKNIKSPMTLSG 254
SA+K+K M VGF+ F + E+L + E L+G+ + NK LK+A+V+P+ ++N
Sbjct: 185 SAQKRKSMKVGFLGFRNQEELTKSAEILDGMPVANKRLKLADVLPQDDNEN--------- 235
Query: 255 NAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLKVKSARDVVTPLAHMSYSV 314
+A E +S VVTPLAH+SY
Sbjct: 236 ---KALEP----------------------------------YRSVTQVVTPLAHLSYED 258
Query: 315 QLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYR 374
QL KK I Q+LK+L RN RK CP+G+ LP+W+ +++ GLPC+ EGIL SP+V+GYR
Sbjct: 259 QLAKKKEEIIQVLKRLARNIRKGCPSGMLLPDWLAAAKDREGLPCEFEGILPSPVVDGYR 318
Query: 375 NKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSD 433
NKCEF++G K VGF LG+FREG+ A+ EP +C NVS +A + + FQ F++ S
Sbjct: 319 NKCEFAIGLGPDGKQRVVGFQLGSFREGINAIAEPGECRNVSSVALNFVAAFQTFIRASK 378
Query: 434 LPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAV 493
LPVW++ N+GFWR LT+REGR PG ++ I+EVMLI QV +
Sbjct: 379 LPVWDKKDNTGFWRMLTIREGREPGSADEIGK--------EIAEVMLIVQVCPTGVPEDR 430
Query: 494 VNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKAD----- 548
E+ ++A+ AT ++P LPLTAL++Q+H GVSN APAD PLR L +P D
Sbjct: 431 ATEEYSKMAEVLIEAATTATPQLPLTALLVQEHVGVSNSAPADCPLRALPLPGLDEIRNT 490
Query: 549 GEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDV 608
G+P D V IHD I +F ISPTAFFQVN+ AEKLYSL G WA LGPDTLLFDV
Sbjct: 491 GKPV---DEVLGHIHDYIGLSKFRISPTAFFQVNSAGAEKLYSLAGVWAGLGPDTLLFDV 547
Query: 609 CCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
CCGTG IGLTLA RVGMV+GIEMNASAV+DA NA++NGI NCRF+ KAEDV+G+LL++
Sbjct: 548 CCGTGAIGLTLAKRVGMVVGIEMNASAVADAQLNADLNGITNCRFIAGKAEDVIGNLLRE 607
Query: 669 YLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCPEGSGKE 728
Y A +G P ++ S +PE + E S +E
Sbjct: 608 Y----------AIDG------------------PVSQKAS--EPETGKS-----EASNEE 632
Query: 729 PQSQLQKDCTSEGNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
S L + F N+VAIVDPPR GLH V++ LR H +L+RL++I
Sbjct: 633 QVSTLVSPANQQNGDSRPRFNNIVAIVDPPRVGLHHVVLRTLRLHKQLRRLVYI 686
>gi|302768729|ref|XP_002967784.1| hypothetical protein SELMODRAFT_440228 [Selaginella moellendorffii]
gi|300164522|gb|EFJ31131.1| hypothetical protein SELMODRAFT_440228 [Selaginella moellendorffii]
Length = 650
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 265/628 (42%), Positives = 357/628 (56%), Gaps = 116/628 (18%)
Query: 159 DGDQDVE---LSKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQL 215
DGDQ+ L KC+ +LP D K+ L + I + SAKK+KG TVGFV+F++ E
Sbjct: 42 DGDQEGRSKGLRKCVQNLPWSMGGDAFKRLLEEQDIKFASAKKRKGKTVGFVEFDAAEHA 101
Query: 216 KNAVEELEGISIGN-KTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHAS 274
++A +LE ++ K KV++ +PRS++ + +GN E+A P
Sbjct: 102 EHAKVKLEAMTGSKGKKPKVSDALPRSWEAD------ETGNGDAKEENAEPP-------- 147
Query: 275 SNGHEDGNGNDEGLAGDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNA 334
K +VVTPLA SY QL K++ +A +L+K R+
Sbjct: 148 -----------------------KDVSEVVTPLASQSYEEQLREKRDGVATVLRKFVRHT 184
Query: 335 RKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFM 394
RK C +G +PEW+ +E GG+ C EGI+ SP+V GYRNKCEFS+G S + VGF
Sbjct: 185 RKCCVHGTPVPEWLTPGKEKGGMACDFEGIIASPVVEGYRNKCEFSIGSSADGESVVGFQ 244
Query: 395 LGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREG 454
+G FR+G+TA+ P +C NVS+IA YA + F++ S+ VWN+ NSGFWR LTVREG
Sbjct: 245 MGMFRKGITAIGNPRNCRNVSDIAKFYAGALESFIRTSEFQVWNKENNSGFWRMLTVREG 304
Query: 455 RSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSP 514
R P E + ++EVML+ QVS + + E+ER+A+ ++ A ++SP
Sbjct: 305 RHP------RTCEEKVP--TVAEVMLVVQVSPSGIANDAKMKEYERMARELSSAAFSASP 356
Query: 515 SLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCIS 574
+ LTAL++Q+H GVSN APADAPL L+IP +V IHD I +L+F IS
Sbjct: 357 PVTLTALLVQEHVGVSNAAPADAPLISLAIP--------GTEVSVQHIHDYIGDLQFRIS 408
Query: 575 PTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNAS 634
PTAFFQVN+ AAEKLY+L G+WA LGP+TLLFD+CCGTGTIGLTLA +VGMV+GIE+NA
Sbjct: 409 PTAFFQVNSFAAEKLYALAGEWAGLGPNTLLFDICCGTGTIGLTLARKVGMVVGIEINAD 468
Query: 635 AVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEK 694
AV+DA NA++N I NCRFVCAKAEDV +N L E E E
Sbjct: 469 AVTDALTNAKLNDISNCRFVCAKAEDV--------VNKLLNEYEVLPE------------ 508
Query: 695 DSSRDNVPENEGCSGQDPENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLAQPFKNVVAI 754
+SS DN + + + F NVV I
Sbjct: 509 ESSEDNAMDTD---------------------------------------KKRFSNVVVI 529
Query: 755 VDPPRGGLHPTVIKILRTHARLQRLLHI 782
VDPPR GLHPTV K LR H+RL+RL+++
Sbjct: 530 VDPPRSGLHPTVTKALRVHSRLKRLVYV 557
>gi|302821947|ref|XP_002992634.1| hypothetical protein SELMODRAFT_448840 [Selaginella moellendorffii]
gi|300139598|gb|EFJ06336.1| hypothetical protein SELMODRAFT_448840 [Selaginella moellendorffii]
Length = 636
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 265/628 (42%), Positives = 362/628 (57%), Gaps = 116/628 (18%)
Query: 159 DGDQDVE---LSKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQL 215
DGDQ+ L KC+ +LP D K+ L + I + SAKK+KG TVGFV+F+ E
Sbjct: 42 DGDQEGRSKGLRKCVQNLPWYMGGDAFKRLLEEQDIKFASAKKRKGKTVGFVEFDVAEHA 101
Query: 216 KNAVEELEGISIGN-KTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHAS 274
++A +LE ++ K KV++ +PRS++ + T +G+AK+ + + +P +++E
Sbjct: 102 EHAKVKLEAMTGSKGKKPKVSDALPRSWEAD----ETGNGDAKEEN-AELPRDVSE---- 152
Query: 275 SNGHEDGNGNDEGLAGDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNA 334
VVTPLA SY QL K++ +A +L+K R+
Sbjct: 153 ----------------------------VVTPLASQSYEEQLREKRDGVATVLRKFVRHT 184
Query: 335 RKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFM 394
RK C +G +PEW+ +E GG+ C EGI+ SP+V GYRNKCEFS+G+S + VGF
Sbjct: 185 RKCCVHGTPVPEWLTPGKEKGGMACDFEGIISSPVVEGYRNKCEFSIGFSADGESVVGFQ 244
Query: 395 LGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREG 454
+G FR+G+T + P +C NVS+IA YA F++ S+ VWN+ NSGFWR LTVREG
Sbjct: 245 MGMFRKGITTIGNPRNCRNVSDIAKFYAGALGSFIRTSEFQVWNKENNSGFWRMLTVREG 304
Query: 455 RSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSP 514
R P + EV + ++EVML+ QVS + E+ER+A+ ++ A ++SP
Sbjct: 305 RHPRTCQE----EVPM----VAEVMLVVQVSPSGIASDAKTKEYERMARELSSAAFSASP 356
Query: 515 SLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCIS 574
+ LTAL++Q+H GVSN APADAPL L+IP +V IHD I +L+F IS
Sbjct: 357 PVTLTALLVQEHVGVSNAAPADAPLISLAIP--------GTEVSVQYIHDYIGDLQFRIS 408
Query: 575 PTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNAS 634
PTAFFQVN+ AAEKLY+L G+WA LGP+TLLFD+CCGTGTIGLTLA +VGMV+GIE+NA
Sbjct: 409 PTAFFQVNSFAAEKLYALAGEWAGLGPNTLLFDICCGTGTIGLTLARKVGMVVGIEINAD 468
Query: 635 AVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEK 694
AV+DA NA++N I NCRFVCAKAEDV +N L E E E
Sbjct: 469 AVTDALTNAKLNNISNCRFVCAKAEDV--------VNKLLNEYEVLPE------------ 508
Query: 695 DSSRDNVPENEGCSGQDPENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLAQPFKNVVAI 754
+SS DN + + + F NVV I
Sbjct: 509 ESSEDNAMDTD---------------------------------------KKRFSNVVVI 529
Query: 755 VDPPRGGLHPTVIKILRTHARLQRLLHI 782
VDPPR GLHPTV K LR H+RL+RL+++
Sbjct: 530 VDPPRSGLHPTVTKALRVHSRLKRLVYV 557
>gi|302821949|ref|XP_002992635.1| hypothetical protein SELMODRAFT_448841 [Selaginella moellendorffii]
gi|300139599|gb|EFJ06337.1| hypothetical protein SELMODRAFT_448841 [Selaginella moellendorffii]
Length = 446
Score = 335 bits (859), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 188/454 (41%), Positives = 263/454 (57%), Gaps = 62/454 (13%)
Query: 159 DGDQD---VELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQL 215
DGDQ+ L KC+ +LP D K+ L + I + SAKK+KG TVGFV+F++ E
Sbjct: 42 DGDQEGWSKGLRKCVQNLPWSMGGDAFKRLLEEQDIKFASAKKRKGKTVGFVEFDAAEHA 101
Query: 216 KNAVEELEGISIGN-KTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHAS 274
++A +LE ++ K KV++ +PRS++ + +GN E+A P
Sbjct: 102 EHAKVKLEAMTGSKGKKPKVSDALPRSWEAD------ETGNGDAKEENAEP--------- 146
Query: 275 SNGHEDGNGNDEGLAGDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNA 334
K +VVTPLA SY QL K++ +A +L+K R+
Sbjct: 147 ----------------------PKDVSEVVTPLASQSYEEQLREKRDGVATVLRKFVRHT 184
Query: 335 RKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFM 394
RK C +G +PEW+ +E GG+ C EGI+ SP+V GYRNKCEFS+G+S + VGF
Sbjct: 185 RKCCVHGTPVPEWLTPGKEKGGMACDFEGIISSPVVEGYRNKCEFSIGFSADGESVVGFQ 244
Query: 395 LGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREG 454
+G FR+G+T + P +C NVS+IA YA + F++ S+ VWN+ NSGFWR LTVREG
Sbjct: 245 MGMFRKGITTIGNPRNCRNVSDIAKFYAGALESFIRTSEFQVWNKENNSGFWRMLTVREG 304
Query: 455 RSPGKPLDVENLEVNISEV-NISEVMLIAQVSSATF--DDAVVNSEFERLAKAFAAGATA 511
R P EV ++EVML+ Q DA + E+ER+A+ ++ A +
Sbjct: 305 RHP---------RTCQEEVPTVAEVMLVVQYLCRYLHVSDAKMK-EYERMARELSSAAFS 354
Query: 512 SSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRF 571
++P + LTAL++Q+H GVSN APADAPL L+IP +V IHD I +L+F
Sbjct: 355 AAPPVTLTALLVQEHVGVSNAAPADAPLISLAIP--------GTEVSVQYIHDYIGDLQF 406
Query: 572 CISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
ISPTAFFQVN+ AAEKLY+L G+WA LGP+TLL
Sbjct: 407 RISPTAFFQVNSFAAEKLYALAGEWAGLGPNTLL 440
>gi|308799347|ref|XP_003074454.1| tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes
(ISS) [Ostreococcus tauri]
gi|116000625|emb|CAL50305.1| tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes
(ISS), partial [Ostreococcus tauri]
Length = 652
Score = 295 bits (755), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 204/650 (31%), Positives = 314/650 (48%), Gaps = 113/650 (17%)
Query: 176 KWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235
+W D ++L G+ SA+ ++G GFV F V +E IG
Sbjct: 19 RWDDDAFARWLDGLGVRRASARTRRGRGYGFVTFGDVRDRLAGQRAMENAMIGGGG---- 74
Query: 236 NVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGL 295
++ MT V GE +A EDG + +
Sbjct: 75 -------RVRVREAMT-------RGRGGVVGEDGDA-------EDGRD----VVARANAR 109
Query: 296 KVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIG 355
+ RDV+TP+ SY QL KK +A+ L+++TR A A + +W+ +
Sbjct: 110 ARRDIRDVITPMWRASYGEQLCAKKEIVAESLREITRGAGMA-----ATCDWLRDALGRD 164
Query: 356 GLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVS 415
L C++EGI+ SP+++GYRNK EF++G S + T GF +G+FR+GV AV PV C N+S
Sbjct: 165 KLCCEIEGIVRSPVLDGYRNKSEFTIGPSADGEITCGFNVGSFRDGVVAVAPPVGCRNIS 224
Query: 416 EIACKYASIFQEFLQQ-----SDLPVWNRFKNSGFWRQLTVREGRSP------------- 457
E A Q +L++ LPV+++ +GFWR REG +
Sbjct: 225 ETAKYLGDATQTYLRERATAGEGLPVYDKRTATGFWRLFLCREGGTAPSSEHGWRHWLRP 284
Query: 458 ------------GKPLDVENLE------------VNISEVNISEVMLIAQVSSATFDDAV 493
G+P + EN+E ++ SEVM++ QV + + +
Sbjct: 285 GTGPPKPPTGENGEPAETENVEPFEYPDEEASLPAPTTKDEKSEVMVMFQVRRSGYTEEQ 344
Query: 494 VNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEE 553
+ E + A A ++P + + +V+Q + GVSNVAP DA +R + + E+
Sbjct: 345 IREECDGARDAVLEAAAKATPPINVKVIVVQFYDGVSNVAPDDAEIRDMRTFETS---EK 401
Query: 554 SNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTG 613
S+DV IH+ + L F +S TAFFQVNTLAAE LY L G+WA +LL DVCCGTG
Sbjct: 402 SSDV----IHERMCGLEFSLSATAFFQVNTLAAEALYRLAGEWASPNGKSLLLDVCCGTG 457
Query: 614 TIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPL 673
TIG+TLA V V+G+++ ++ DA NA++NG+ N ++ KAE V+ +L++Y + +
Sbjct: 458 TIGMTLAGNVKKVVGVDIVEESIKDAFVNAQLNGVTNTDWLAGKAEVVIPKVLREYNSRI 517
Query: 674 REEDEHASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCPEGS-GKEPQSQ 732
R + G+ ++ T SN PE S G + ++
Sbjct: 518 RPVVDAPKIGTKRKAT-----------------------------SNDPELSDGSDDEAA 548
Query: 733 LQKDCTSEGNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
+Q T+ + F +VVAIVDPPRGGLH +V+ LR RL+RL+++
Sbjct: 549 IQAAVTTIIDENEYEFDDVVAIVDPPRGGLHRSVLTALRREKRLKRLVYV 598
>gi|413917813|gb|AFW57745.1| hypothetical protein ZEAMMB73_428540 [Zea mays]
Length = 408
Score = 288 bits (738), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 168/331 (50%), Positives = 205/331 (61%), Gaps = 49/331 (14%)
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESND 556
EF++L+ GA SP LPLT +V+QDH+G+SN AP D PL L +PK D + D
Sbjct: 4 EFDKLSAILIQGAATCSPPLPLTTIVVQDHKGISNAAPTDCPLIPLLVPKGDQLDGTTED 63
Query: 557 VVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIG 616
+ RIHD ISNL+F +SPTAFFQVNTLAAE+LY+L GDWA+L DTLLFDVCCGTGTIG
Sbjct: 64 KI--RIHDHISNLKFSLSPTAFFQVNTLAAERLYTLAGDWANLNSDTLLFDVCCGTGTIG 121
Query: 617 LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREE 676
LTLA VGMV+GIEMN SAVS+A RNA +NGIKNCRFVC KAEDVMG LL +YL +
Sbjct: 122 LTLAQHVGMVVGIEMNESAVSNACRNALVNGIKNCRFVCGKAEDVMGPLLTEYLG--SPQ 179
Query: 677 DEHASEGSNKEITIA--------------EEKDSSRDNVPENEG------------CSGQ 710
+ A+ SN EI A E DSS+ EG C+ +
Sbjct: 180 QQAAASKSNSEIDDASKNEDTIGCASYDGENIDSSKQRNDNAEGQQPMGASVDHPTCASE 239
Query: 711 DPENDIA--DSNCPEGS--GKEP----------QSQLQKDCTSEGN-----SLAQPFKNV 751
EN++A + NC E S +P Q + KD +S N + A FKNV
Sbjct: 240 VDENNVASGEQNCGEASLVNDKPIETASDNSLEQGKACKDGSSSPNNNVLAANACQFKNV 299
Query: 752 VAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
VAIVD PR GL PTVIK LRTH R++RL+++
Sbjct: 300 VAIVDSPRVGLRPTVIKALRTHPRIRRLVYV 330
>gi|145340943|ref|XP_001415576.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144575799|gb|ABO93868.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 581
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 169/496 (34%), Positives = 259/496 (52%), Gaps = 51/496 (10%)
Query: 298 KSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPE-----WIMKSR 352
+ RDV+TPL ++SY QL KK +A+ ++ +TR R A W+ +
Sbjct: 72 RDIRDVITPLWNVSYGEQLARKKEIVAEAMRNITRGVRNASNKARKSGRRADVGWMRAAL 131
Query: 353 EIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCP 412
L C+L GI+ SP+++GYRNK EF++G S + T GF +G+FR+GVTAV P C
Sbjct: 132 GNDKLCCELGGIVRSPVLDGYRNKSEFTIGPSANGEITCGFNVGSFRDGVTAVAPPTGCR 191
Query: 413 NVSEIACKYASIFQEFLQQ-----SDLPVWNRFKNSGFWRQLTVRE-GRSPGKPLDVENL 466
N+S+ A Q +L+ LPV+++ K +GFWR RE G +P ++
Sbjct: 192 NISDTAKYLGDATQTYLRARAADGKGLPVYDKRKATGFWRLFLCREAGTAPASEHGWKHW 251
Query: 467 EVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDH 526
+ V+++ QV + + D V E + + A S+ + L ++Q
Sbjct: 252 ------LRTGAVLVMFQVCTRGYTDEQVKEECDGVLAAVEEAVAKSAKPINLKTCLVQFW 305
Query: 527 QGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAA 586
GVSNVAP DA ++ L + + E+S D+ IH+ + L+F +S TAFFQVNT+AA
Sbjct: 306 DGVSNVAPDDAEIKNL---RTNAPSEKSADI----IHEHMCGLQFSLSATAFFQVNTVAA 358
Query: 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN 646
E LY L G+WA G +LL DVCCGTGTIGLTLA V V+G+++ ++ DA NA++N
Sbjct: 359 EALYRLAGEWASPGGQSLLLDVCCGTGTIGLTLARAVKKVVGVDIVEESIRDAFTNAKLN 418
Query: 647 GIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEG 706
G+ N ++ KAE V+ +L DY +R + + +++ ++ D S D E
Sbjct: 419 GVDNTDWLAGKAEHVLPKVLNDYKTLIRPDGRAPKPFT--AVSVLDDPDLSADEETEAIV 476
Query: 707 CSGQDPENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPPRGGLHPTV 766
+ + ++ +N F +VVAIVDPPR GLH V
Sbjct: 477 EAKETTNAELVGAN-------------------------HEFDDVVAIVDPPRAGLHRHV 511
Query: 767 IKILRTHARLQRLLHI 782
+ LR RL+RL+++
Sbjct: 512 LSALRRENRLKRLVYV 527
>gi|297722731|ref|NP_001173729.1| Os04g0105000 [Oryza sativa Japonica Group]
gi|255675113|dbj|BAH92457.1| Os04g0105000 [Oryza sativa Japonica Group]
Length = 404
Score = 258 bits (659), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 153/317 (48%), Positives = 188/317 (59%), Gaps = 60/317 (18%)
Query: 523 IQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVN 582
+QDH+G+SN APAD PL L +PK D + V + RIHD I NL F ISPTAFFQVN
Sbjct: 13 MQDHKGISNAAPADCPLIPLLVPKVD---QSEGTVDKTRIHDHIGNLWFSISPTAFFQVN 69
Query: 583 TLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRN 642
TLAAE+LY+L GDWA+L TLLFDVCCGTGTIGLTLAHRVGMV+GIEMN SAVSDA RN
Sbjct: 70 TLAAERLYTLAGDWANLNSGTLLFDVCCGTGTIGLTLAHRVGMVVGIEMNESAVSDAERN 129
Query: 643 AEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREE---DEHASEGSNKEITIAEEKDSSRD 699
A ING+ NCRFVC KAEDVMGSLL +YL +++ E A G+ K+ + + +S +
Sbjct: 130 ALINGVSNCRFVCGKAEDVMGSLLTEYLGSPQQDIPVSEGAVSGTVKDEEVIDSSKNSGE 189
Query: 700 NV----PENEGCSGQDPENDIADS-----------------NCPEGSGKEPQSQLQKDCT 738
N+ +N+ Q + ADS N EGS E +D
Sbjct: 190 NLDSSMQKNDNGESQQLGDAPADSSSSAIDEIKGNSNDRVGNGLEGSHDEYNEVAGEDIH 249
Query: 739 SE------------------------GNSL---------AQPFKNVVAIVDPPRGGLHPT 765
E G+S+ A F+++VAIVDPPR GLHPT
Sbjct: 250 GEASLINESVDLKVSDCLEDRKTSDDGSSISNNDVTAATACQFEDIVAIVDPPRVGLHPT 309
Query: 766 VIKILRTHARLQRLLHI 782
VIK LRTH R++RL++I
Sbjct: 310 VIKALRTHPRIRRLVYI 326
>gi|260833806|ref|XP_002611903.1| hypothetical protein BRAFLDRAFT_106799 [Branchiostoma floridae]
gi|229297275|gb|EEN67912.1| hypothetical protein BRAFLDRAFT_106799 [Branchiostoma floridae]
Length = 650
Score = 232 bits (591), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 163/501 (32%), Positives = 235/501 (46%), Gaps = 69/501 (13%)
Query: 172 HLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKT 231
+LPR KK + + G+ K + + FV F E + A+E L +
Sbjct: 120 NLPRYAGFAQFKKRMVNQGLTPHKVKIIQRDNIAFVAFRCEEDRQKALEVLNSHVWKGCS 179
Query: 232 LKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAGD 291
L + P + P+ ++ S + + + GNDE D
Sbjct: 180 LSASKSNPAA------DPLVKKRKEREES------------GAGSSQKRARGNDE----D 217
Query: 292 GSGLKVKSARDV-VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMK 350
L VK + VTPL ++ Y QL+ K S +L KL+R P L W+++
Sbjct: 218 DEDLPVKDRLLLAVTPLWNVPYEEQLKQKTESQKVVLGKLSRAIENVNP---GLGSWVVQ 274
Query: 351 SR-EIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAK-PTVGFMLGNFREGVTAVEEP 408
R + + CKLE I SP++N YRNK EF++G S + K T+GF LG ++ G V P
Sbjct: 275 QRKQYDNMCCKLEDITPSPILNNYRNKNEFNIGISPEGKEKTIGFRLGRYKGGSCTVVSP 334
Query: 409 VDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEV 468
DCPN+ + A IFQ +L+QS ++ K+ G W+QLTVR +
Sbjct: 335 YDCPNLPDTAKDMVRIFQTYLEQSTRSGYDTEKHQGHWKQLTVRTTQG------------ 382
Query: 469 NISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQG 528
SEVM++ Q + + + E + L F+ G +T+L Q H+
Sbjct: 383 -------SEVMVMVQFNVQDLSEEEIEKEKQLLKDYFSTGP---GKDCGITSLFFQAHK- 431
Query: 529 VSNVAPADAPLRLLSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAA 586
+ G+ E S ++ + I + + + F ISP AFFQVNTLAA
Sbjct: 432 ----------------QRRPGDEEASYQLLLGKEVIQEKLLGMTFRISPDAFFQVNTLAA 475
Query: 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN 646
E LYS DW D D+ + DVCCGTGTIGLTLA V VIG+E+ AV DA NA IN
Sbjct: 476 EVLYSKVADWCDFTKDSTVLDVCCGTGTIGLTLAKHVKKVIGVELCQQAVEDAKVNANIN 535
Query: 647 GIKNCRFVCAKAEDVMGSLLK 667
GI N F+C KAED++ L++
Sbjct: 536 GIDNAEFLCGKAEDILPDLVR 556
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 750 NVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
++VA+VDPPR GLH VI +LR + L +L+++
Sbjct: 562 DLVAVVDPPRAGLHTRVISVLRKCSNLTKLVYV 594
>gi|327283217|ref|XP_003226338.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A-like
[Anolis carolinensis]
Length = 631
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 178/546 (32%), Positives = 250/546 (45%), Gaps = 60/546 (10%)
Query: 125 AKKARKLEDGDKCEAKEDAVE--EVMMTEAVVDGDGDGDQDVELSKCLVH-LPRKWHSDN 181
AK LE+ + AK D E T ++ D E+ K + LP+
Sbjct: 13 AKSLASLEETETIAAKGDVCEGNNAANTSSLYRYIKDDLFTSEIYKVEIQNLPKYIGFHE 72
Query: 182 LKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRS 241
+KKFLA +G+ K T FV F+S E+ AV+ L G+ N+ L + P++
Sbjct: 73 VKKFLAKYGVNPHKIKLLGKQTFAFVTFKSEEERDKAVKVLHGVRWKNQNLSIRLAKPKA 132
Query: 242 FDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLKVKSAR 301
P+ + ++ E + A A E G +E L K
Sbjct: 133 ------DPI-MKKRKREEGEGEETKDPAAAKCPMLSKE---GKNEPLD--------KQIA 174
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
DVVTPL + Y QL KK Q+L KLTR N LP ++ + GL L
Sbjct: 175 DVVTPLWTVPYEEQLAKKKQECEQVLLKLTRELGNN--NRALLPWLFLQKEKYSGLCSPL 232
Query: 362 EGILGSPLVNGYRNKCEFSVGYSL-QAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
EG+ SPL YRNKCEF +G L Q TVGF LG ++ G AV EP + ++ + K
Sbjct: 233 EGVKSSPLQTEYRNKCEFLIGIGLNQEDKTVGFRLGKYKGGTCAVVEPFETIHIPAVVKK 292
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
A FQ++++ + V++ G WRQLTVR R+ ++M
Sbjct: 293 VAKAFQDYIRSTPYNVYSPETYEGHWRQLTVRISRN-------------------QDIMA 333
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
I + + +AK F GA S +T+L + + D L
Sbjct: 334 IVYFNPQKVSKEGLTELQTSVAKYFMEGAGKES---GITSLYFVEEGQKKSPNREDLALE 390
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
++ K I++ + +RF ISP AFFQVNT AAE LYS DWA +G
Sbjct: 391 HVAGNK--------------YIYEDLLGMRFRISPHAFFQVNTQAAEVLYSAIQDWAQVG 436
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
P+T + DVCCGTGTIG+TLA +V VIGIE+ AV DA NA++N + N F C KAED
Sbjct: 437 PETTVLDVCCGTGTIGITLAKKVKKVIGIELCQEAVEDAKVNAQLNDLNNVEFYCGKAED 496
Query: 661 VMGSLL 666
++ L+
Sbjct: 497 LVPQLV 502
>gi|66800597|ref|XP_629224.1| hypothetical protein DDB_G0293244 [Dictyostelium discoideum AX4]
gi|60462618|gb|EAL60821.1| hypothetical protein DDB_G0293244 [Dictyostelium discoideum AX4]
Length = 646
Score = 223 bits (567), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 154/510 (30%), Positives = 238/510 (46%), Gaps = 85/510 (16%)
Query: 167 SKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGIS 226
S + LP+ S KFL + + +K KK + G V F+SVE +E +G
Sbjct: 58 SMVIFGLPKYLDSKKFTKFLEQNNVPFKKIKKIVKESFGIVSFDSVEDRDKYLEYFQGFQ 117
Query: 227 IGNKTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDE 286
+KT L AK+ + + E
Sbjct: 118 FNDKT-------------------KLKTEAKEEKSDRMKRKYEEKELDK----------- 147
Query: 287 GLAGDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPE 346
D K+ + ++V P ++ Y QL+ KKN I +++ + RK + +LPE
Sbjct: 148 --KEDNRESKLLTIEEIVCPWYNIPYEEQLKKKKNQIEKVMINIKSTTRKESLH--NLPE 203
Query: 347 WIMKSREIG--GLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTA 404
W++K + + C LE I+ SP+ YRNK ++++GY KP VGF LG G+T
Sbjct: 204 WLVKRDKTKEEKMCCGLEEIVPSPVTENYRNKAQYTIGYDADNKPCVGFALGRTGNGITI 263
Query: 405 VEEPVDCPNVSEIACKYASIFQEFLQQSDL----PVWNRFKNSGFWRQLTVREGRSPGKP 460
V +P + P +S+ + + +F E++ + +L +++ +SGFWRQLTVR+ +
Sbjct: 264 VADPSNAPLISKRSNEIRRLFNEYITEPNLGSNRKPFDKNSHSGFWRQLTVRDFTT---- 319
Query: 461 LDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLP--- 517
E M Q + + +E L FA SLP
Sbjct: 320 ---------------GETMATVQFNHKGLTAEELETEKNNLKNYFA--------SLPEEQ 356
Query: 518 -LTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPT 576
+T+L IQ + G+SN AP D L++ DG PE IH+++ +F +S
Sbjct: 357 RITSLSIQLYDGISNSAPVD-----LAVETIDG-PE--------FIHENLLGCQFRVSAN 402
Query: 577 AFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAV 636
AFFQ+NT A E LYS DWA + DT L D+CCGTGTIG ++ +V VIG+E++ AV
Sbjct: 403 AFFQINTKATELLYSKVLDWAQVSQDTTLLDICCGTGTIGQCISKKVKKVIGLEISPDAV 462
Query: 637 SDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
D+ NA++N I N ++ KAED + +LL
Sbjct: 463 IDSINNAKLNKIDNAEYLVGKAEDTLPTLL 492
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 752 VAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
+ IVDPPRGGLH V+K +RT +++L+++
Sbjct: 504 IGIVDPPRGGLHGDVLKAIRTFEPIKKLVYV 534
>gi|349732166|ref|NP_001093345.2| tRNA methyltransferase 2 homolog A [Xenopus laevis]
Length = 621
Score = 222 bits (566), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 159/503 (31%), Positives = 238/503 (47%), Gaps = 64/503 (12%)
Query: 172 HLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKT 231
+LP+ ++LKKFL +G+ K K T FV F+S E+ A++ + G+ N+
Sbjct: 76 NLPKYIGFNDLKKFLGKYGLNPHKIKLMKKQTFAFVTFKSEEERDKAMKVIHGVMWKNRP 135
Query: 232 LKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAGD 291
L V PR+ P+ Q + GE E+ + H D +E L+
Sbjct: 136 LSVRLAKPRA------DPIM------QKRKQEEDGEQPESKRQT-VHNDAE--EEPLS-- 178
Query: 292 GSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKS 351
K DVVTPL + Y QL+ K+ ++LK+LT+ + N L W+ +
Sbjct: 179 ------KQISDVVTPLWQVPYEEQLKIKEEECCKVLKQLTK---EIGVNNKPLMPWLFEQ 229
Query: 352 RE-IGGLPCKLEGILGSPLVNGYRNKCEFSVGYSL-QAKPTVGFMLGNFREGVTAVEEPV 409
++ L C LE ++ SP+ YRNK EF +GY + + TVG L ++ G AV EP
Sbjct: 230 KQKYNRLCCPLERVIPSPIQTEYRNKSEFLIGYGVNREDKTVGCRLSKYKGGTCAVVEPF 289
Query: 410 DCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVN 469
D N+ + FQE+++ + V++ G W+QLTVR R
Sbjct: 290 DTINIPPVTKNVVKAFQEYIRSTPYDVYSPETYDGHWKQLTVRTTRK------------- 336
Query: 470 ISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGV 529
+VM I + V+ L+ F G+ S +T+L +
Sbjct: 337 ------GQVMAIVYFNPQKLPKEVLTELKASLSDYFTKGSGKESG---VTSLYFVEEGQR 387
Query: 530 SNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKL 589
+ D P+ ++ + I++ + L F ISP AFFQVNTLAAE L
Sbjct: 388 KSPLLEDLPVEHVA--------------GDQYIYEDLLGLSFRISPHAFFQVNTLAAEVL 433
Query: 590 YSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIK 649
YS GDWA L DT + DVCCGTGTIG++LA +V V+GIE+ A++DA NA++N +
Sbjct: 434 YSAIGDWAQLDQDTTVLDVCCGTGTIGISLAKKVKKVVGIELCQEAIADAKANAQLNNLD 493
Query: 650 NCRFVCAKAEDVMGSLLKDYLNP 672
N F C KAED+ +L+ Y P
Sbjct: 494 NVEFRCGKAEDIFPTLINSYTFP 516
>gi|148745595|gb|AAI42551.1| LOC100101284 protein [Xenopus laevis]
Length = 612
Score = 222 bits (566), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 159/503 (31%), Positives = 238/503 (47%), Gaps = 64/503 (12%)
Query: 172 HLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKT 231
+LP+ ++LKKFL +G+ K K T FV F+S E+ A++ + G+ N+
Sbjct: 67 NLPKYIGFNDLKKFLGKYGLNPHKIKLMKKQTFAFVTFKSEEERDKAMKVIHGVMWKNRP 126
Query: 232 LKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAGD 291
L V PR+ P+ Q + GE E+ + H D +E L+
Sbjct: 127 LSVRLAKPRA------DPIM------QKRKQEEDGEQPESKRQT-VHNDAE--EEPLS-- 169
Query: 292 GSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKS 351
K DVVTPL + Y QL+ K+ ++LK+LT+ + N L W+ +
Sbjct: 170 ------KQISDVVTPLWQVPYEEQLKIKEEECCKVLKQLTK---EIGVNNKPLMPWLFEQ 220
Query: 352 RE-IGGLPCKLEGILGSPLVNGYRNKCEFSVGYSL-QAKPTVGFMLGNFREGVTAVEEPV 409
++ L C LE ++ SP+ YRNK EF +GY + + TVG L ++ G AV EP
Sbjct: 221 KQKYNRLCCPLERVIPSPIQTEYRNKSEFLIGYGVNREDKTVGCRLSKYKGGTCAVVEPF 280
Query: 410 DCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVN 469
D N+ + FQE+++ + V++ G W+QLTVR R
Sbjct: 281 DTINIPPVTKNVVKAFQEYIRSTPYDVYSPETYDGHWKQLTVRTTRK------------- 327
Query: 470 ISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGV 529
+VM I + V+ L+ F G+ S +T+L +
Sbjct: 328 ------GQVMAIVYFNPQKLPKEVLTELKASLSDYFTKGSGKESG---VTSLYFVEEGQR 378
Query: 530 SNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKL 589
+ D P+ ++ + I++ + L F ISP AFFQVNTLAAE L
Sbjct: 379 KSPLLEDLPVEHVA--------------GDQYIYEDLLGLSFRISPHAFFQVNTLAAEVL 424
Query: 590 YSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIK 649
YS GDWA L DT + DVCCGTGTIG++LA +V V+GIE+ A++DA NA++N +
Sbjct: 425 YSAIGDWAQLDQDTTVLDVCCGTGTIGISLAKKVKKVVGIELCQEAIADAKANAQLNNLD 484
Query: 650 NCRFVCAKAEDVMGSLLKDYLNP 672
N F C KAED+ +L+ Y P
Sbjct: 485 NVEFRCGKAEDIFPTLINSYTFP 507
>gi|126324739|ref|XP_001376871.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A
[Monodelphis domestica]
Length = 663
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 163/496 (32%), Positives = 228/496 (45%), Gaps = 58/496 (11%)
Query: 172 HLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKT 231
++PR ++KKFLA G+ K FV F+S E+ A++ L G +
Sbjct: 70 NVPRYVGFSDVKKFLAKFGLQPHKTKLFGHRPFAFVTFKSQEERDRAMKVLHGALWKGRC 129
Query: 232 LKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAGD 291
L + P++ PM AK+ G AEA + G + + +E +A
Sbjct: 130 LSIRLAKPKA------DPM-----AKKRKREGEEGGPAEAKRPAPGAAEPSSVEEPIA-- 176
Query: 292 GSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKS 351
K DVVTPL + Y QLE K+ Q+L+KLT+ N LP ++
Sbjct: 177 ------KQIADVVTPLWTLPYEEQLERKQQECEQVLQKLTKEIGNN--NRTLLPWLFVQK 228
Query: 352 REIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAK-PTVGFMLGNFREGVTAVEEPVD 410
++ L C LEG+ SPL YRNKCEF +G + + TVG LG ++ G AV EP D
Sbjct: 229 QKFNKLCCPLEGVKASPLQTEYRNKCEFLIGVGVGCQDKTVGCRLGKYKGGSCAVAEPFD 288
Query: 411 CPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNI 470
++ + FQE+++ + V++ G WRQLTVR RS
Sbjct: 289 TVHIPAGTKRVVRAFQEYIRSTPYSVYSPETYEGHWRQLTVRTSRS-------------- 334
Query: 471 SEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVS 530
E M I + L + F AG S +T+L +
Sbjct: 335 -----GETMAIVYFHPQKLSQEELAGLKASLGQHFTAGPGQPS---GVTSLYFVEEGQRK 386
Query: 531 NVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLY 590
+ D PL ++ E IH+ + L+F ISP AFFQVNT AAE LY
Sbjct: 387 SPNREDLPLEHVA--------------GEKYIHEELLGLKFRISPHAFFQVNTPAAEVLY 432
Query: 591 SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKN 650
+ DWA L + + DVCCGTGTIGL+LA V VIGIE+ AV DA NA++N + N
Sbjct: 433 TTIRDWAQLDGEITVLDVCCGTGTIGLSLAQTVKRVIGIELCQEAVEDARVNAKMNALDN 492
Query: 651 CRFVCAKAEDVMGSLL 666
F C KAED++ SL+
Sbjct: 493 IEFHCGKAEDLVPSLM 508
>gi|156402171|ref|XP_001639464.1| predicted protein [Nematostella vectensis]
gi|156226593|gb|EDO47401.1| predicted protein [Nematostella vectensis]
Length = 711
Score = 218 bits (556), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 159/502 (31%), Positives = 240/502 (47%), Gaps = 61/502 (12%)
Query: 170 LVHLPRKWHSDNLKKFL----ADHGILYKSAKKK---KGMTVGFVKFESVEQLKNAVEEL 222
L LPR + KK + A+H +K K K FV F + E+ A++ L
Sbjct: 150 LPKLPRGFGFKQFKKMIENQIANHKESFKPVKIKLVPPPANCAFVTFRNEEERMKALKIL 209
Query: 223 EGISIGNKTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGN 282
G K L+ K +K P+ + A + E + A A + +
Sbjct: 210 SGSKWRGKILRT------KLAKALKDPVVVKQKAAEGKERKRMIQEA-AERNPDAKRAKT 262
Query: 283 GNDEGLAGDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGV 342
G D+ + L D VTPL YS QLE K I + LKKLT+ + + +
Sbjct: 263 GGDKNQVDFFARL-----NDSVTPLWSKPYSEQLEFKNQKIEEFLKKLTKQIK----DMM 313
Query: 343 SLP-EWIMKSREI-GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFRE 400
L W+ + ++ G+ C+L+ SP+V+GYRNKCEF++ + TVGF +G+++E
Sbjct: 314 ELKGTWVEEESKVRNGICCELQKCEESPIVDGYRNKCEFTIAEGPKGAKTVGFRVGSYKE 373
Query: 401 GVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKP 460
G + V EP +C ++S+ A K AS FQ++++ S LP ++ ++G W+ LTVR
Sbjct: 374 GYSGVIEPFNCCHISKTAKKVASAFQKYIRNSPLPEYDLCFHTGHWQTLTVRS------- 426
Query: 461 LDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTA 520
+ E M I Q + + +E +++ + F G LT+
Sbjct: 427 ------------TVLGESMAIVQYNPQKMSATEIATENDKIRRYFLEG---EGKECNLTS 471
Query: 521 LVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQ 580
L Q + + + AP L + E IH+ I +++F ISP AFFQ
Sbjct: 472 LYAQVNATRAVGCQSPAPFTHL--------------LGEKVIHEVICDVKFGISPNAFFQ 517
Query: 581 VNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAH 640
VN+ AAEK+ + W +T L D+CCGTG+IGL LA V VIG+E+ SAV DA
Sbjct: 518 VNSKAAEKMIHIISRWMGEQKETTLLDICCGTGSIGLCLAKYVSKVIGVEVIQSAVEDAK 577
Query: 641 RNAEINGIKNCRFVCAKAEDVM 662
+NA +NGI N +VC KAEDV
Sbjct: 578 QNAIMNGITNAEYVCGKAEDVF 599
>gi|330796726|ref|XP_003286416.1| hypothetical protein DICPUDRAFT_94161 [Dictyostelium purpureum]
gi|325083611|gb|EGC37059.1| hypothetical protein DICPUDRAFT_94161 [Dictyostelium purpureum]
Length = 645
Score = 218 bits (556), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 152/511 (29%), Positives = 230/511 (45%), Gaps = 89/511 (17%)
Query: 166 LSKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGI 225
S L +LP+ KFL + + YK KK + G + F+SVE +E+L G
Sbjct: 65 FSLVLFNLPKYMDLKKFNKFLEQNKVPYKKTKKIVKESFGVISFDSVEVRDKFLEKLNGF 124
Query: 226 SIGNKTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGND 285
+G K LK E+ E A + ND
Sbjct: 125 EMGTKKLKC--------------------------------EIKEEKADRMKRKFNEQND 152
Query: 286 EGLAGDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLP 345
+ + K+K+ ++V P ++ Y QL+ KK I +L + RK + +LP
Sbjct: 153 DRES------KLKTIEEIVCPWYNIPYEEQLQKKKEQIINILINIKSETRKDSLH--NLP 204
Query: 346 EWIM---KSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGV 402
W+ K+RE + C LE I+ SP + YRNK ++++G P VGF LG GV
Sbjct: 205 FWLERRDKTRE-EKMCCPLEEIIASPTIQNYRNKAQYTIGLDENNVPCVGFALGRTGNGV 263
Query: 403 TAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLD 462
T V +P + P +S + + +F +++ +++ + GFWRQLTVR+
Sbjct: 264 TIVADPSNAPLISTRSNEIRRLFNDYIISHPRKPFDKNTHEGFWRQLTVRD--------- 314
Query: 463 VENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLP----L 518
+ E M Q + + +N E + L K F SLP L
Sbjct: 315 ----------FSTGESMATVQFNHKGLSEEEINKEKDNLKKFFE--------SLPADKQL 356
Query: 519 TALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAF 578
T+L IQ + G+SN AP D P + P IH+ + F +SP AF
Sbjct: 357 TSLSIQLYDGISNAAPVDLPTETIMGPNY--------------IHEKLLGYTFRVSPNAF 402
Query: 579 FQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSD 638
FQVNT A E LYS +WA + +T L DVCCGTGTIG + +V + G+E++ A++D
Sbjct: 403 FQVNTKATELLYSKVLEWAGVSENTHLLDVCCGTGTIGQCASKKVKCITGLEISPDAITD 462
Query: 639 AHRNAEINGIKNCRFVCAKAEDVMGSLLKDY 669
+ NA++N I N + KAED + S+L +
Sbjct: 463 SISNAQLNNITNAEYTLGKAEDTLPSMLTKF 493
>gi|349732168|ref|NP_001120451.2| TRM2 tRNA methyltransferase 2 homolog A [Xenopus (Silurana)
tropicalis]
Length = 622
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 154/503 (30%), Positives = 239/503 (47%), Gaps = 63/503 (12%)
Query: 172 HLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKT 231
+LP+ ++LKKFL +G+ K T FV F+S E+ A++ + G+ N+T
Sbjct: 76 NLPKYICFNDLKKFLGKYGLNPHKIKLMNKQTFAFVTFKSEEERDKAMKVIHGVKWKNRT 135
Query: 232 LKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAGD 291
L V PR+ D ++ G+ +Q ++ A+ N E+ E L+
Sbjct: 136 LSVRLAKPRA-DPIMQKRKQEEGDGEQPE--------SKRQAAHNDAEE-----EPLS-- 179
Query: 292 GSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKS 351
K+ DVVTPL + Y QL+ K+ ++LK+LT+ N L W+ +
Sbjct: 180 ------KTISDVVTPLWQVPYEEQLKIKEEECCKVLKQLTKEIGV---NNKPLAPWLFEQ 230
Query: 352 RE-IGGLPCKLEGILGSPLVNGYRNKCEFSVGYSL-QAKPTVGFMLGNFREGVTAVEEPV 409
++ L C LE ++ SP+ YRNK EF +GY + Q TVG L ++ G AV EP
Sbjct: 231 KQKYNRLCCPLERVIPSPIQTEYRNKSEFLIGYGVNQEDKTVGCRLSKYKGGTCAVVEPF 290
Query: 410 DCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVN 469
D N+ + FQE+++ + V++ +G W+QLTVR R
Sbjct: 291 DTINIPPVTKNVVRAFQEYIRSTPYDVYSPETYAGHWKQLTVRTSRK------------- 337
Query: 470 ISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGV 529
+VM I + ++ L+ F G+ S +T+L +
Sbjct: 338 ------GQVMAIVYFNPQKLPKEDLSELKTSLSMYFTEGSGKES---GVTSLYFVEEGQR 388
Query: 530 SNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKL 589
+ D P+ ++ + I++ + L F ISP AFFQVNT AAE L
Sbjct: 389 KSPHLEDLPVEHIA--------------GDQYIYEDLLGLTFRISPHAFFQVNTPAAEVL 434
Query: 590 YSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIK 649
YS DWA L +T + DVCCGTGTIG++LA +V V+GIE+ A++DA NA++N +
Sbjct: 435 YSAIADWAQLDQNTTVLDVCCGTGTIGISLAKKVKKVVGIELCQEAIADAKANAQLNNLD 494
Query: 650 NCRFVCAKAEDVMGSLLKDYLNP 672
N F C KAED+ +L+ + P
Sbjct: 495 NVEFRCGKAEDIFPTLIYSFTFP 517
>gi|170285270|gb|AAI61232.1| LOC100145545 protein [Xenopus (Silurana) tropicalis]
Length = 613
Score = 215 bits (548), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 154/503 (30%), Positives = 237/503 (47%), Gaps = 63/503 (12%)
Query: 172 HLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKT 231
+LP+ ++LKKFL +G+ K T FV F+S E+ A++ + G+ N+T
Sbjct: 67 NLPKYICFNDLKKFLGKYGLNPHKIKLMNKQTFAFVTFKSEEERDKAMKVIHGVKWKNRT 126
Query: 232 LKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAGD 291
L V PR+ P+ ++ GE E+ + H D +E L+
Sbjct: 127 LSVRLAKPRA------DPIMQKRKQEEGD-----GEQPESKRQA-AHNDAE--EEPLS-- 170
Query: 292 GSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKS 351
K+ DVVTPL + Y QL+ K+ ++LK+LT+ N L W+ +
Sbjct: 171 ------KTISDVVTPLWQVPYEEQLKIKEEECCKVLKQLTKEIGV---NNKPLAPWLFEQ 221
Query: 352 RE-IGGLPCKLEGILGSPLVNGYRNKCEFSVGYSL-QAKPTVGFMLGNFREGVTAVEEPV 409
++ L C LE ++ SP+ YRNK EF +GY + Q TVG L ++ G AV EP
Sbjct: 222 KQKYNRLCCPLERVIPSPIQTEYRNKSEFLIGYGVNQEDKTVGCRLSKYKGGTCAVVEPF 281
Query: 410 DCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVN 469
D N+ + FQE+++ + V++ +G W+QLTVR R
Sbjct: 282 DTINIPPVTKNVVRAFQEYIRSTPYDVYSPETYAGHWKQLTVRTSRK------------- 328
Query: 470 ISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGV 529
+VM I + ++ L+ F G+ S +T+L +
Sbjct: 329 ------GQVMAIVYFNPQKLPKEDLSELKTSLSMYFTEGSGKES---GVTSLYFVEEGQR 379
Query: 530 SNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKL 589
+ D P+ ++ + I++ + L F ISP AFFQVNT AAE L
Sbjct: 380 KSPHLEDLPVEHIA--------------GDQYIYEDLLGLTFRISPHAFFQVNTPAAEVL 425
Query: 590 YSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIK 649
YS DWA L +T + DVCCGTGTIG++LA +V V+GIE+ A++DA NA++N +
Sbjct: 426 YSAIADWAQLDQNTTVLDVCCGTGTIGISLAKKVKKVVGIELCQEAIADAKANAQLNNLD 485
Query: 650 NCRFVCAKAEDVMGSLLKDYLNP 672
N F C KAED+ +L+ + P
Sbjct: 486 NVEFRCGKAEDIFPTLIYSFTFP 508
>gi|387915936|gb|AFK11577.1| tRNA uracil-5-methyltransferase A -like protein [Callorhinchus
milii]
Length = 606
Score = 215 bits (547), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 162/497 (32%), Positives = 233/497 (46%), Gaps = 64/497 (12%)
Query: 172 HLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKT 231
+LP+ +L+KFLA +G+ K FV F+ E+ A+E L+G N++
Sbjct: 74 NLPKFVSFSDLRKFLARNGLNPHKIKLFGKRPFAFVTFKMEEERDKAMEALQGQVWKNRS 133
Query: 232 LKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAGD 291
L V P++ K N + VP E G +E L+
Sbjct: 134 LNVRLAKPKADPIAKKRKQEGVENDDHEQKRMVPAE---------------GLEEPLS-- 176
Query: 292 GSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIM-K 350
K DVVTPL ++ Y QL+ K+ ++ Q+L LTR N +L W+ +
Sbjct: 177 ------KQIADVVTPLWNVPYEKQLKTKEQNVLQVLGVLTREIGN---NNKALLPWVSEQ 227
Query: 351 SREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAK-PTVGFMLGNFREGVTAVEEPV 409
++ G C L+G+ SPL YRNKCEF +G + T+G LG ++ G AV EP
Sbjct: 228 KKKHGDTCCPLQGVKPSPLQTEYRNKCEFLIGVGANGEDKTIGCRLGKYKGGSCAVVEPF 287
Query: 410 DCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVN 469
+ ++ FQ++++ S V++ G W+QLTVR R+
Sbjct: 288 ETIHIPAKMKAVVKSFQDYIRSSPYCVYSPETYEGHWKQLTVRTTRA------------- 334
Query: 470 ISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGV 529
+++M I + LAK F G + +T+L
Sbjct: 335 ------NQIMAIVFFNPQKLGKPEQEQLQGELAKYFTEG---NGKECGVTSLYFAQEGQR 385
Query: 530 SNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKL 589
+ D PL ++ K I++ + L+F ISP AFFQVNT AAE L
Sbjct: 386 KSPNLEDLPLDHVTGDKY--------------IYEELLGLKFRISPHAFFQVNTQAAEVL 431
Query: 590 YSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIK 649
YS GDWADL DT++ DVCCGTGTIGL+LA RV VIGIEM +AV DA NAE+NGI
Sbjct: 432 YSAVGDWADLNQDTVVLDVCCGTGTIGLSLAKRVKKVIGIEMCQAAVEDAKVNAELNGIT 491
Query: 650 NCRFVCAKAEDVMGSLL 666
N F+C KAED+ +++
Sbjct: 492 NVEFLCGKAEDLFPTVI 508
>gi|412993521|emb|CCO14032.1| predicted protein [Bathycoccus prasinos]
Length = 833
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 201/700 (28%), Positives = 309/700 (44%), Gaps = 154/700 (22%)
Query: 173 LPRKWHSDNLKKFLADHGIL-YKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKT 231
LP +W + L + + + KK+ G T FV F ++ +++L+
Sbjct: 147 LPSRWDERRFRLALHEMRVTGHTKVKKRTGWTHAFVTFNFPKERDYCLKKLQ-------- 198
Query: 232 LKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAGD 291
R+ + + K + SA G + + ASS G + G A D
Sbjct: 199 -------ERAKQQREEEEEEKEKEGKSDAASA-GGAMMKGGASSKGWKFGKKVTMSEARD 250
Query: 292 GSGLKVKSA--------------RDVVTPLAHMSYSVQLEHKKNSIAQML---------- 327
G + RD V PL ++ YS QL+ KK + + L
Sbjct: 251 KGGKNSSNNEEKKEKKKTAKTEARDAVCPLWNVKYSEQLKMKKAKVRKALAMVTELVGKA 310
Query: 328 -KKLTRNARKACPNGVSLP------EWIM-KSREIGGLPCKLEGILGSPLVNGYRNKCEF 379
+K RN G + +W+ S C L GI+ SP++ GYRNK EF
Sbjct: 311 NEKFKRNNTNNNGKGSDVEGEEETEQWLKDASARKNKRCCDLVGIVRSPVLEGYRNKSEF 370
Query: 380 SVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQ-----QSDL 434
++G + Q +PT+GF +G FREG A+ EPV C N+S++A Q++L+ + L
Sbjct: 371 TIGNNNQGQPTIGFNVGLFREGNVAIGEPVGCRNISKVAICVQEAAQKYLRDVAGTEDAL 430
Query: 435 PVWNRFKNSGFWRQLTVREG-------------------RSPGKPLDVENLEVNISEVNI 475
P W++ SGFWR L VREG ++ P + L + E +
Sbjct: 431 PSWDKRNGSGFWRLLIVREGGCAPSMLGDSNSNNDNDSNQNCAAPAWRKWLRLEEGERDE 490
Query: 476 SEVMLIAQVSSATFDDA-------------------VVN----SEFE--RLAKAFA---- 506
E A+V+ DDA VV EFE ++ KA
Sbjct: 491 DEEDDNAEVTVNGIDDAEDALSLDAPTPKENSEVMVVVQINPGKEFEAAKMEKALKGIRD 550
Query: 507 AGATASSPSLP----LTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARI 562
A TA+S P +T + Q ++ VSN+A ADA L + G+ +N+ I
Sbjct: 551 AMETAASAFKPESFFITVQLRQHNELVSNMAAADAHTSELVV----GDRNTANNKPMV-I 605
Query: 563 HDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR 622
+ + L+F +S +AFFQVNT AAE LY+L G+WA ++LL DVCCGTGTIGLTLA+
Sbjct: 606 CEHMCGLKFSLSHSAFFQVNTAAAELLYALAGEWASPNGNSLLLDVCCGTGTIGLTLANS 665
Query: 623 VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASE 682
VG V+G+++ A+ DA +N+++N NC ++ KAED + +LK Y
Sbjct: 666 VGKVVGLDIVEDAIRDAEKNSKLNDRTNCEWIAGKAEDTLDVVLKKY------------- 712
Query: 683 GSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCPEGSGKEPQSQLQKDCTSEGN 742
G+D + ++N EGS E + + ++ +
Sbjct: 713 --------------------------GEDVKTVAGNTNEEEGSKDEHEEERRQ----QQQ 742
Query: 743 SLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
+ +VVAIVDPPR GLH V+ LR RL++++++
Sbjct: 743 KREFLYDDVVAIVDPPRCGLHKKVLNALRMETRLRKIVYV 782
>gi|384485443|gb|EIE77623.1| hypothetical protein RO3G_02327 [Rhizopus delemar RA 99-880]
Length = 571
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 137/366 (37%), Positives = 195/366 (53%), Gaps = 48/366 (13%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVS---LPEWIMKSREIGGLP 358
D VTPL M Y QL KKN Q LK LT +K +G+S I + E G LP
Sbjct: 121 DQVTPLWRMDYEQQL-VKKNR--QGLKALTALKKKV--SGLSNDKTKSQIGWALEPGMLP 175
Query: 359 CKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIA 418
C++ +GSP +N YR KCEF++G +L +PTVGF+LG +R+G+ AV EP +C NVS+ A
Sbjct: 176 CEMLPTIGSPEINNYRTKCEFTIGTNLDGEPTVGFLLGLYRDGIIAVLEPDECLNVSDTA 235
Query: 419 CKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEV 478
+ A ++++ SDLPV++R + G WR + ++P + EV
Sbjct: 236 KQIAKSMSDYIKASDLPVYDRVEKKGCWRTIM---AKTP----------------STGEV 276
Query: 479 MLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAP 538
M++ Q+SSA ++ E L + + + S +T L++Q G SN AP
Sbjct: 277 MILVQLSSADLSPERLDQEKANLIEFWEKKSPVS-----VTTLLLQVWNGSSNGFTDKAP 331
Query: 539 LRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWAD 598
+ L V +H+ + LRF +S +AFFQVNT A E LYS +W +
Sbjct: 332 VETL--------------VGSGYVHEELLGLRFRLSASAFFQVNTAATEILYSKCAEWCN 377
Query: 599 L--GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCA 656
+ T L D+CCGTGTIGLT+A V VIGIEM A+ DA NA +NG+ N + +
Sbjct: 378 IDSSKKTTLLDLCCGTGTIGLTMAKSVDKVIGIEMVPEAIEDAKINAALNGVNNVTYYAS 437
Query: 657 KAEDVM 662
K E+ M
Sbjct: 438 KVENAM 443
>gi|440792796|gb|ELR14004.1| tRNA methyltransferase, putative [Acanthamoeba castellanii str.
Neff]
Length = 664
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 150/527 (28%), Positives = 244/527 (46%), Gaps = 101/527 (19%)
Query: 175 RKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKV 234
++W +KFL G+ + S +K + F + + +A+ +L+G ++ T++
Sbjct: 74 KRW-----EKFLRQKGVDFISTRKITAQRFAKISFATKAAMDDAIAKLDGATVRGSTIR- 127
Query: 235 ANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSG 294
AK A + EL + G +
Sbjct: 128 ---------------------AKVAKRAGGEIELEDKPVEKRQKTAGKAEEPP------- 159
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
K D+VTP+ + YS Q+ K+N + + LK + + RK + LP WI +++
Sbjct: 160 ---KDINDIVTPMWRLDYSDQVRKKRNVVLKKLKAVQKEIRKK--SAYDLPRWIAQAKTT 214
Query: 355 GGLPCKLEGILGS--PLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCP 412
C + + + +GYRNK F++G + +P +GF LG + T+V +P +C
Sbjct: 215 SQC-CSFKLFIQAEESQRDGYRNKNTFTIGRDVAGRPCIGFALGRTEDHQTSVADPSECR 273
Query: 413 NVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISE 472
N+ + A ++ Q+F++ S P + + ++GFWR+ VR R+
Sbjct: 274 NLPKEAKAARNLLQQFIESSPHPPYEKLGHTGFWREAVVRTTRA---------------- 317
Query: 473 VNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNV 532
EVML QV+ DAV E + + + A AS+ + P+++L +Q + GVSN
Sbjct: 318 ---GEVMLAIQVNG----DAVSADELQAVKTSLIEHAKAST-NPPISSLYLQSYSGVSNR 369
Query: 533 APADAPLRLLSIPKADGEPEESNDVVEARI---------HDSISN-----------LRFC 572
AP D LL G+P + + + + +I++ LRF
Sbjct: 370 APDDQETELLW-----GQPYIYETLFDLKYTSLYFLFLSYVAIADLRPHPPTHHVLLRFR 424
Query: 573 ISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG-------- 624
ISP++FFQVNT AE LY + GDW D++LFD+CCGTGTIGL+LA R
Sbjct: 425 ISPSSFFQVNTSGAEALYKVVGDWVAATKDSVLFDICCGTGTIGLSLASRAKEFPVSNPE 484
Query: 625 --MVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDY 669
V+G+++ SA+ DA NA++NGI N F KAEDV+ LL+ Y
Sbjct: 485 NDQVVGVDIVPSAIEDAEANAKLNGITNAHFFAGKAEDVLPDLLERY 531
>gi|387019435|gb|AFJ51835.1| tRNA (uracil-5-)-methyltransferase homolog A-like [Crotalus
adamanteus]
Length = 636
Score = 212 bits (540), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 164/498 (32%), Positives = 234/498 (46%), Gaps = 62/498 (12%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L +LP+ +KKFLA +G+ K T FV F+S E+ A++ L G+ N
Sbjct: 56 LQNLPKYIGFSEVKKFLARYGLNPHKIKLMGKQTFAFVTFKSEEERDKAMKVLHGVRWKN 115
Query: 230 KTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLA 289
+ L V P++ P+ ++ +E A+ ASS +G +E L+
Sbjct: 116 RNLGVRLAKPKA------DPILKKRRREEGAEEVS----AKRPASSK-----DGEEESLS 160
Query: 290 GDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIM 349
K DVVTPL + Y QL KK ++L KLTR N LP +
Sbjct: 161 --------KQIADVVTPLWTIPYEDQLVKKKQQCQEVLAKLTREVGNN--NRALLPWLFL 210
Query: 350 KSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSL-QAKPTVGFMLGNFREGVTAVEEP 408
+ + GL C LEG+ SPL YRNKCEF +G Q TVGF LG ++ G AV +P
Sbjct: 211 QKEKHDGLCCSLEGVKPSPLQTEYRNKCEFLIGSGPNQEDKTVGFRLGKYKGGSCAVVDP 270
Query: 409 VDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEV 468
D +V A K FQ++++ + V++ G W+QLTVR LD
Sbjct: 271 FDTIHVPAAAKKVVRAFQDYIRSTSYRVYSPETYEGHWKQLTVRTS------LD------ 318
Query: 469 NISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQG 528
+VM IA + + +A F G S L +++ Q
Sbjct: 319 -------GQVMAIAYFNPQKLSQEERATLQSSMATYFTEGPGKDSGITSL--YFVEEGQR 369
Query: 529 VSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEK 588
S P L L +N + I +++ L+F ISP AFFQVNT AAE
Sbjct: 370 KS---PNREDLIL------------NNIAGDKYIQENLLGLKFRISPHAFFQVNTKAAEV 414
Query: 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI 648
LYS DW ++ DT + DVCCGTG+IG++LA +V VIG+E+ AV DA NA++NG+
Sbjct: 415 LYSTIQDWVEINQDTTVLDVCCGTGSIGISLAQKVKKVIGVELCEEAVEDAKANAQLNGL 474
Query: 649 KNCRFVCAKAEDVMGSLL 666
N C KAE+++ L+
Sbjct: 475 MNVELHCGKAEELVPHLV 492
>gi|47227704|emb|CAG09701.1| unnamed protein product [Tetraodon nigroviridis]
Length = 586
Score = 212 bits (540), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 163/496 (32%), Positives = 234/496 (47%), Gaps = 60/496 (12%)
Query: 172 HLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKT 231
+LP+ ++LKKFLA HG+ K T FV F++ ++ A++ + G+ +
Sbjct: 53 NLPKFVGFNDLKKFLAKHGLNPHKIKLFGKQTFAFVTFKNEDERDKAMKMVHGVQWKGQV 112
Query: 232 LKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAGD 291
L V P++ D ++ KQ E GE A S+ E G+ +
Sbjct: 113 LAVRLAKPKA-DPILR-------KRKQQEE----GEGAGGQPSAKRAEAGDKEEP----- 155
Query: 292 GSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKS 351
L V+ A +VVTPL ++ Y QL+ K+ + +L++L + N LP +
Sbjct: 156 ---LSVQIA-NVVTPLWNVPYEEQLKWKEQEVVAVLQRLAKEIGNT--NKAMLPWLFAQK 209
Query: 352 REIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAK-PTVGFMLGNFREGVTAVEEPVD 410
+ + C LE I SP YRNKCEF + + T+GF LG ++ G AV P D
Sbjct: 210 GKYNKMCCPLEAIRPSPAQTEYRNKCEFLISTGANGEDKTIGFRLGKYKGGSCAVVGPAD 269
Query: 411 CPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNI 470
+VS A + FQ+F++ + V++ G W+QLTVR R+
Sbjct: 270 TCHVSAEAKRVVGQFQKFIRTTPYSVYSPETYEGHWKQLTVRTTRT-------------- 315
Query: 471 SEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVS 530
E M I D+ VN+ + K F G S L V + +
Sbjct: 316 -----EEAMAIVFFHPQKLDEEEVNALKASMRKHFTEGEGKDSGVTSLY-FVREGQRTSP 369
Query: 531 NVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLY 590
NV D P L++ IH+ + L+F ISP +FFQVNT AAE LY
Sbjct: 370 NVE--DLPCELVA--------------GHGWIHEELLGLKFRISPHSFFQVNTGAAEVLY 413
Query: 591 SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKN 650
S G+WA L DT + DVCCGTGTIG++LA RV VIGIE+ AV DA NA++NG+ N
Sbjct: 414 SAVGEWAQLDEDTTVLDVCCGTGTIGISLAKRVKKVIGIELCQEAVEDAKVNAQLNGLTN 473
Query: 651 CRFVCAKAEDVMGSLL 666
F C KAEDV ++L
Sbjct: 474 VEFHCGKAEDVFPNIL 489
>gi|118098389|ref|XP_415080.2| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A [Gallus
gallus]
Length = 602
Score = 212 bits (540), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 155/496 (31%), Positives = 228/496 (45%), Gaps = 71/496 (14%)
Query: 172 HLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKT 231
+LP+ +++KKFLA +G+ K T FV F+S E+ AV L G + +
Sbjct: 30 NLPKYIGFNDVKKFLAKYGLSPHKIKLLGKQTFAFVTFKSEEERDEAVRVLHGAAWKGRA 89
Query: 232 LKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAGD 291
L V P++ PM + +Q + E AE +
Sbjct: 90 LGVRAAKPKA------DPM--ARKRRQEERAGAGAEPAEPLS------------------ 123
Query: 292 GSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKS 351
K DVVTPL + Y QL K+ Q+L+KL + N LP ++
Sbjct: 124 ------KRIADVVTPLWAVPYEQQLAEKRRECEQVLQKLAKEIGNT--NRALLPWLFLQK 175
Query: 352 REIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSL-QAKPTVGFMLGNFREGVTAVEEPVD 410
++ + C +EG+ SPL YRNKCEF +G + Q TVG LG ++ G AV EP D
Sbjct: 176 QKYNKMCCPVEGVKASPLQTEYRNKCEFLIGIGVNQEDKTVGCRLGKYKGGTCAVVEPFD 235
Query: 411 CPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNI 470
++ +A K FQ++++ + V++ G W+QLTVR R+
Sbjct: 236 TIHIPAVAKKVVKAFQDYIRSTPYSVYSPETYEGHWKQLTVRTSRN-------------- 281
Query: 471 SEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVS 530
+M I + + LAK F GA S +T+L +
Sbjct: 282 -----GHIMAIVYFNPQKLSREELADLKAALAKHFTEGAGKESG---ITSLYFVEEGQRK 333
Query: 531 NVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLY 590
+ D PL ++ K I++ + L+F ISP AFFQVNT AAE LY
Sbjct: 334 SPNLEDLPLEHVAGDK--------------YIYEELLGLKFRISPHAFFQVNTQAAEVLY 379
Query: 591 SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKN 650
+ +WA L ++ + D+CCGTGTIG++LA +V VIGIE+ AV DA NA+IN + N
Sbjct: 380 AAIREWAQLSQESTVLDICCGTGTIGISLAKKVKKVIGIELCQEAVQDAKANAQINELSN 439
Query: 651 CRFVCAKAEDVMGSLL 666
F C KAED++ SL+
Sbjct: 440 IEFHCGKAEDIVPSLI 455
>gi|432875344|ref|XP_004072795.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A-like
[Oryzias latipes]
Length = 616
Score = 212 bits (539), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 183/590 (31%), Positives = 266/590 (45%), Gaps = 84/590 (14%)
Query: 95 CCHGSTCRYAHGEEELRIRPDNTWDPTSERAKKARKLEDGDKCEAKEDAVEEVMMTEAVV 154
C HG CR + DN ++ + ++ ED C + +A+ + E
Sbjct: 5 CAHGKPCR---------MMADNDGSLAADVSSNEKRPEDLQNCSS--NALSPDVKAEGDP 53
Query: 155 DGDGDGDQDVELSKCLV----------HLPRKWHSDNLKKFLADHGILYKSAKKKKGMTV 204
+G D D+ + + L +LP+ ++LKKFLA H I K T
Sbjct: 54 EGPSDPDKYRYIKEDLFTSEIYKVEIRNLPKFIGFNDLKKFLAKHSINPHKIKLIGKHTF 113
Query: 205 GFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAV 264
FV F++ E+ A + + G+ + L V P+ D +K KQ
Sbjct: 114 AFVTFKNEEERDKAHKLVHGMQWKGQVLSVRLAKPKE-DPILK-------KRKQ------ 159
Query: 265 PGELAEAHASSNGHEDGNGNDEGLAGDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIA 324
E+ E A + G++E L L V+ A +VVTPL + +Y QL+ K+ +
Sbjct: 160 --EVGEGGAGQPASKRAEGDEEELP-----LSVQIA-NVVTPLWNSTYEEQLKMKEQEVV 211
Query: 325 QMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEF--SVG 382
+L+KL + N LP + + + C LE I SP YRNKCEF SVG
Sbjct: 212 GVLQKLAKEI--GSTNKAMLPWLFAQKVKHNKMCCPLEAIRPSPTQTEYRNKCEFLISVG 269
Query: 383 YSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKN 442
+ K T+GF LG ++ G AV P +VS A FQ+F++ + ++
Sbjct: 270 ADGEDK-TIGFRLGKYKGGSCAVVGPSATCHVSAAAKTVVREFQKFIRTTPYSAYSPETY 328
Query: 443 SGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLA 502
G W+QLTVR R+ E M + + ++ +N+ +
Sbjct: 329 EGHWKQLTVRTTRA-------------------KEAMAVVFFNPQKLEEEDLNALKTSMR 369
Query: 503 KAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARI 562
F G S L ++D Q S P D P L++ E+ I
Sbjct: 370 TFFTEGDGKDSGVTSL--YFVRDGQRKSP-NPEDLPCELVA--------------GESCI 412
Query: 563 HDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR 622
H+ + LRF ISP +FFQVNT AAE LYS GDWA L D+ + DVCCGTGTIG++LA R
Sbjct: 413 HEELLGLRFRISPHSFFQVNTAAAEVLYSTVGDWAQLDQDSTVLDVCCGTGTIGISLAKR 472
Query: 623 VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
V VIGIE+ AV DA NA++NG+ N F C KAEDV +L ++P
Sbjct: 473 VKKVIGIELCQEAVEDAKVNAKLNGLSNVEFHCGKAEDVFPDILNALVSP 522
Score = 43.5 bits (101), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 742 NSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
N+L P ++ A+VDPPR GLHP VI +R L+RL+++
Sbjct: 517 NALVSP--SLTAVVDPPRAGLHPKVILAIRRAEHLKRLVYV 555
>gi|41053969|ref|NP_956223.1| tRNA (uracil-5-)-methyltransferase homolog A [Danio rerio]
gi|28279548|gb|AAH45367.1| Trm2 tRNA methyltransferase 2 homolog A (S. cerevisiae) [Danio
rerio]
Length = 619
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 155/503 (30%), Positives = 232/503 (46%), Gaps = 59/503 (11%)
Query: 172 HLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKT 231
+LP+ ++LKKFL HGI K FV F++ E+ A++ + G+ +
Sbjct: 80 NLPKYIGFNDLKKFLNKHGINPHKIKLLGRQKFAFVTFKNQEERDKAMKAVHGMQWKSNV 139
Query: 232 LKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAGD 291
L V P++ P+ ++ ++S PG E G+ E +
Sbjct: 140 LSVRLAKPKA------DPILKKRKQEEEADSGQPGA-----------ERNTGSQEAEKEE 182
Query: 292 GSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKS 351
++ A + VTPL + Y QL K+ + +L+KL AR+ N ++ W+
Sbjct: 183 EEPPSIQIA-NAVTPLWKVPYEEQLMMKEKEVEGVLQKL---AREIGNNNKAMLPWLFVQ 238
Query: 352 REI-GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPV 409
+E + C LE I SPL GYRNKCEF +G + TVGF LG ++ G AV P
Sbjct: 239 KEKHNKMCCPLEAIRPSPLQTGYRNKCEFVIGVGADGEDRTVGFRLGKYKGGSCAVVSPS 298
Query: 410 DCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVN 469
+ NV A + FQ+F++ + V++ G WRQLTVR R
Sbjct: 299 ETTNVCSEAKRVVQCFQQFIRTTPYAVYSPETYEGHWRQLTVRTTR-------------- 344
Query: 470 ISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGV 529
+ + M + + + + + L + F G +T+L
Sbjct: 345 -----LKQTMAMVFFNPQKLQEKELEELKQNLGQYFTEG---EGKECAVTSLYFVRMGQR 396
Query: 530 SNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKL 589
++ D P ++ E IH+ + L+F ISP +FFQ NT AAE L
Sbjct: 397 TSAGTEDLPCEHVT--------------GEEWIHEELLGLKFRISPHSFFQTNTPAAEIL 442
Query: 590 YSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIK 649
YS G+WA L D+ + DVCCGTGTIG++LA RV VIGIE+ AV DA NA+ NG+
Sbjct: 443 YSAVGEWAQLDQDSTVLDVCCGTGTIGISLAKRVKKVIGIELCQEAVKDAEANAKANGLT 502
Query: 650 NCRFVCAKAEDVMGSLLKDYLNP 672
N F C KAEDV ++L ++P
Sbjct: 503 NVEFHCGKAEDVFPTILNAVVSP 525
Score = 43.1 bits (100), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 742 NSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
N++ P NV AIVDPPR GLH VI +R L+RL+++
Sbjct: 520 NAVVSP--NVTAIVDPPRAGLHSKVILAIRKAEHLKRLVYV 558
>gi|301109485|ref|XP_002903823.1| tRNA (uracil-5-)-methyltransferase [Phytophthora infestans T30-4]
gi|262096826|gb|EEY54878.1| tRNA (uracil-5-)-methyltransferase [Phytophthora infestans T30-4]
Length = 815
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 133/344 (38%), Positives = 184/344 (53%), Gaps = 68/344 (19%)
Query: 342 VSLPEWIMKSREIG-----GLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLG 396
V+L E I ++ G GL C ++ I SP+ GYRNKCEFS G+ + KP VGF LG
Sbjct: 422 VALTEEIKGAKLTGFASHNGLCCPMDSIHASPVTEGYRNKCEFSFGFDKEDKPCVGFRLG 481
Query: 397 NFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRS 456
FREG V +P +C NVS+ ++ Q ++ SD+PV++ SG WR LTVR+ S
Sbjct: 482 LFREGSVVVSKPDECINVSKEMKAVCAVMQNIVETSDVPVYSVTTKSGVWRVLTVRQSVS 541
Query: 457 PGKPLDVENLEVNISEVNISEVMLIAQVS--------SATFDDAVVNSEFERLAKAFAAG 508
G E+M++ QV+ A D VV +RL
Sbjct: 542 TG------------------ELMVMVQVNLVGKTPEERAAVKDLVV----KRL------- 572
Query: 509 ATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVE-----ARIH 563
T S + +T++ IQ+++G+S AP+D ND VE ++
Sbjct: 573 -TDESNAFKITSVFIQEYEGLS--APSD------------------NDPVEHVYGKTKLE 611
Query: 564 DSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV 623
+ + +RF +SP AFFQVNT AEKLYSL +A+ TLL+DVCCGTGTIG+ + V
Sbjct: 612 EHLLGMRFSVSPNAFFQVNTHGAEKLYSLVKQYANADEHTLLYDVCCGTGTIGICASEGV 671
Query: 624 GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLK 667
G V+GIE+ A DA NA +N ++N FV +KAEDVM SLL+
Sbjct: 672 GKVVGIEICKPATDDAQVNAILNNVQNVSFVNSKAEDVMKSLLQ 715
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 29/181 (16%)
Query: 157 DGDGDQDVELSKCLVHLPRKWH-SDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQL 215
D ++DV K +V KW + L + L G+ + +K + ++ GFV F S E+
Sbjct: 14 DAHQEEDV---KAIVMNYGKWKDAKALTELLHQKGVSFLKVQKSRQLSFGFVVFNSKEER 70
Query: 216 KNAVEELEGISIGNKTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASS 275
A+ +L+ I + L+V + +P+ K I+ + KQ +
Sbjct: 71 AAAMPKLQTIQWNGELLEVKDALPKKSMKPIRKRNKRESDNKQGEDQ-----------QK 119
Query: 276 NGHEDGNGNDEGLAGDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNAR 335
ED + D RDVVTP A + Y QLE K+ + ++L K+ R+ R
Sbjct: 120 EQQEDVSQRD--------------VRDVVTPWASVPYDEQLERKEAEMKKVLVKIVRHTR 165
Query: 336 K 336
K
Sbjct: 166 K 166
>gi|328866133|gb|EGG14519.1| hypothetical protein DFA_12295 [Dictyostelium fasciculatum]
Length = 728
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 151/505 (29%), Positives = 223/505 (44%), Gaps = 75/505 (14%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
+ +LP+ +D KKFLA + I Y + KK G + + E+ + + +L G+
Sbjct: 113 VFNLPKFMSTDKFKKFLAKNNITYITCKKVFKEQFGIIVVDGPEKKEEVMTKLNGLDCEG 172
Query: 230 KTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLA 289
LKV L G+ K + + + N + N E
Sbjct: 173 GILKV----------------ILKGDGKNNKNNNNNNNNNNNNNNRNNQNNQNKEPE--- 213
Query: 290 GDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKAC--PNGVSLPEW 347
K+K DVV P + Y QL KK + ++L + +K C N P+W
Sbjct: 214 ------KLKVIEDVVNPWHSVDYQEQLARKKKYVTKVLADIVPAVKKDCGYNNTGKFPDW 267
Query: 348 IMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEE 407
+K+ C LE ++ SP+V+GYRNKC +++G P VGF LG GVT V +
Sbjct: 268 -LKNATKNTPCCPLEEVVASPVVDGYRNKCSYTIGLLSDGTPCVGFALGRTANGVTVVGD 326
Query: 408 PVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLE 467
P C +S + + + +++ S L + + ++GFWRQLTVR+
Sbjct: 327 PSGCRIISARSNAIRAHLETYVRASALKPYEKTTHTGFWRQLTVRD-------------- 372
Query: 468 VNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLP------LTAL 521
E M QV VV + G TA LP +T+
Sbjct: 373 -----FTTGEAMATVQVGPQGVAADVVKETID--------GLTAHFKDLPADSQAHVTSF 419
Query: 522 VIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQV 581
+Q + GVSN AP D P+ + P +H+ + F +S AFFQV
Sbjct: 420 QVQYYDGVSNAAPVDHPVTTVYGPD--------------HVHEKLLGYEFQVSSNAFFQV 465
Query: 582 NTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHR 641
N+ A EKLYS +WAD DT+L DVCCGTGTIG ++ V + G+E+ AV DA +
Sbjct: 466 NSAATEKLYSKVLEWADCAKDTVLLDVCCGTGTIGQCVSGNVRHIYGLELAPDAVKDAIK 525
Query: 642 NAEINGIKNCRFVCAKAEDVMGSLL 666
NA+ N I N ++ KAED M L+
Sbjct: 526 NAQHNNITNVDYLVGKAEDTMSGLV 550
>gi|170056918|ref|XP_001864248.1| 23S rRNA methyltransferase [Culex quinquefasciatus]
gi|167876535|gb|EDS39918.1| 23S rRNA methyltransferase [Culex quinquefasciatus]
Length = 619
Score = 209 bits (533), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 131/385 (34%), Positives = 202/385 (52%), Gaps = 45/385 (11%)
Query: 296 KVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIG 355
K ++ + VT LA++SY QL+ K++ + +LK K+CP S E K +E
Sbjct: 150 KRRTLEESVTALAYLSYEDQLKQKQSEMHNVLKGFGDEVWKSCPTLRSFIE--QKRKEHD 207
Query: 356 GLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVS 415
GLPCKLE I GSP V+GYRNKCEFS+G Q + VGF +G++ G VE P ++S
Sbjct: 208 GLPCKLEDIRGSPQVDGYRNKCEFSIGKDGQGEVRVGFRVGSYSNGFLEVESPDQLKHIS 267
Query: 416 EIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLE-VNISEVN 474
E +F+EF+Q+S+ V++ G++RQLTVR + G+ + V + + +
Sbjct: 268 EKMKSTVKLFEEFVQKSEYEVYSPETYKGYFRQLTVRTSNATGQVMVVIGIHPQELGKEK 327
Query: 475 ISEVM--LIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNV 532
+SE+ L++ +S + ++S + + + F +G A P T L + H
Sbjct: 328 LSELRSSLVSWFTSEKAKEIGISSIYFQTIEKFKSGQNAH----PTTHLWGETH------ 377
Query: 533 APADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSL 592
I + I L+F +SP AFFQ+NT +AE LY
Sbjct: 378 -----------------------------IIEEIHGLKFRVSPQAFFQINTPSAEILYQT 408
Query: 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCR 652
D A T + D+CCGTGTIGL A V+G+E+ A A++DA NA+ NGI+NC+
Sbjct: 409 AIDLAGTTKQTSILDICCGTGTIGLCFAKHCKQVLGVEIVAEAIADATHNAKENGIENCK 468
Query: 653 FVCAKAEDVMGSLLKDYLNPLREED 677
F A+D++ SL+++ N ++ED
Sbjct: 469 FYTGNADDLITSLVRN-ANVQKDED 492
>gi|348516356|ref|XP_003445705.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A
[Oreochromis niloticus]
Length = 605
Score = 206 bits (525), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 159/503 (31%), Positives = 239/503 (47%), Gaps = 62/503 (12%)
Query: 172 HLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKT 231
+LPR ++LKKFLA HG+ K T FV F++ E+ A++ + G+ +
Sbjct: 69 NLPRFVGFNDLKKFLAKHGLNPHKIKLFGRQTFAFVTFKNEEERDKAMKMVHGMQWKGQV 128
Query: 232 LKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAGD 291
L V P++ P+ + GE A ++G+ +E L+
Sbjct: 129 LSVKLAKPKA------DPILRKRKENE-------GESAGGPPPCKRTDEGDEEEEPLS-- 173
Query: 292 GSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKS 351
V+ A +VVTPL ++ Y QL+ K+ + +L+KL + N +P +
Sbjct: 174 -----VQIA-NVVTPLWNVPYDEQLKRKEQEVVAVLQKLAKEI--GSTNKAMVPWLFAQK 225
Query: 352 REIGGLPCKLEGILGSPLVNGYRNKCEF--SVGYSLQAKPTVGFMLGNFREGVTAVEEPV 409
+ + C LE + SP+ YRNKCEF SVG + K T+GF LG ++ G AV P
Sbjct: 226 GKYNNMCCPLEALRPSPIQTEYRNKCEFLISVGADGEDK-TIGFRLGKYKGGSCAVVGPA 284
Query: 410 DCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVN 469
D +V A K S FQ+F++ + V++ G W+QLTVR R+
Sbjct: 285 DTCHVPPEAKKVVSEFQKFIRTTPYSVYSPETYEGHWKQLTVRTTRT------------- 331
Query: 470 ISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGV 529
M + + ++ + + + + F G S +T+L
Sbjct: 332 ------KHAMAMVFFNPQKLEEEELGALKNSMKEYFTEGEGKDSG---VTSLYFVREGQR 382
Query: 530 SNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKL 589
+ P D P L++ E+ I + + L+F ISP +FFQVNT AAE L
Sbjct: 383 KSPNPEDLPCELVA--------------GESCIQEEMLGLKFRISPHSFFQVNTGAAEVL 428
Query: 590 YSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIK 649
YS G+ A L D++L DVCCGTGTIG++LA RV VIGIEM AV DA NA++NG+
Sbjct: 429 YSAVGELAKLDQDSILLDVCCGTGTIGISLAKRVKKVIGIEMCQEAVEDAKVNAKLNGLS 488
Query: 650 NCRFVCAKAEDVMGSLLKDYLNP 672
N F C KAEDV ++L ++P
Sbjct: 489 NVEFHCGKAEDVFPNILNAVVSP 511
>gi|452819944|gb|EME26994.1| methyltransferase [Galdieria sulphuraria]
Length = 546
Score = 205 bits (522), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 128/383 (33%), Positives = 204/383 (53%), Gaps = 55/383 (14%)
Query: 298 KSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGL 357
K+ DVV P H SY Q+ K+++I +L ++T + + +G SL W+ + +
Sbjct: 110 KAVADVVAPWRHYSYPEQIRRKRSAILAVLARITSSLKSQAGSG-SLT-WL---KSLQKR 164
Query: 358 PC-KLEGILGSPLVNG----YRNKCEFSVGYSLQ----AKPTVGFMLGNFREG---VTAV 405
PC LE ++ P G YRNK EF++G+S + + TVGF LG FREG V +V
Sbjct: 165 PCCTLESVIDMPEEEGARLFYRNKNEFTIGFSYKDDGLSIETVGFALGLFREGEVGVASV 224
Query: 406 EEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVEN 465
E +C S+ A A+I + F++ S LP +++ + GFWRQ TVREG
Sbjct: 225 NE--ECVTTSKKAIAIANILEVFIRSSQLPAYDKRTHKGFWRQATVREG----------- 271
Query: 466 LEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQD 525
E++++ QV + FD +++ E R+ + + ++ S +L + +V+Q+
Sbjct: 272 -------FRTKEILVLIQVQTEGFDRNIIHKETSRIVEFLLS--SSQSINLEVHGIVLQE 322
Query: 526 HQGVSNVAPAD-APLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTL 584
H G+SN P D P+ + G+P H+ + NL F I +FFQ NT
Sbjct: 323 HNGISNFVPTDKCPITIF------GQP---------YFHEQLMNLTFRIGSLSFFQTNTF 367
Query: 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAE 644
AAE+L ++ +W +L + + D+CCGTGTIG+ LA +V VIGIE+ AV+DA N E
Sbjct: 368 AAERLLNVIMEWGELTSHSTVLDLCCGTGTIGMCLASKVAQVIGIELVEEAVNDAKVNME 427
Query: 645 INGIKNCRFVCAKAEDVMGSLLK 667
+N I+N + K ED + + ++
Sbjct: 428 MNNIQNMTVLVGKVEDKLKTAIQ 450
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 26/32 (81%)
Query: 751 VVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
+VAI DPPR GLHP+VIK LR +++RL++I
Sbjct: 457 IVAIADPPRAGLHPSVIKTLRNVVQIKRLIYI 488
>gi|281206857|gb|EFA81041.1| hypothetical protein PPL_05876 [Polysphondylium pallidum PN500]
Length = 666
Score = 204 bits (520), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 123/373 (32%), Positives = 187/373 (50%), Gaps = 44/373 (11%)
Query: 297 VKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWI--MKSREI 354
+K D+ P + YSVQLE K+ ++ +L+ +T + RK C S P+W+ +K R +
Sbjct: 188 LKLIEDITNPWHKLEYSVQLEKKEANVTNVLRDMTSSIRKEC---TSQPQWLQALKGRVV 244
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
C LE I+ SP + YRNK +++G P VGF LG GVT V +P C +
Sbjct: 245 A---CPLEEIVPSPETSHYRNKTSYTIGRLEDGNPCVGFALGRTGNGVTVVGDPTPCLII 301
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
SE + QE+++ P +++ ++GFWRQL VR+
Sbjct: 302 SERSNAIRLHLQEYIRAHPRPPFDKTTHTGFWRQLNVRD-------------------FT 342
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+ M Q + + + E +L + FA A +T+L +Q + GVSN AP
Sbjct: 343 TGQTMATVQFNHRGLSEEEITGECNQLIELFAR---AKGTKAEVTSLSVQLYDGVSNAAP 399
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
D P++++ P+ I + + F +S AFFQVN+ AAE L+S
Sbjct: 400 VDLPVKIIDGPET--------------IVEKLLGKEFHVSSNAFFQVNSKAAESLFSKVT 445
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
+WA + +++ DVCCGTGTIG ++ + V G+EM AV+DA NAE NGIKN ++
Sbjct: 446 EWAGVNERSIVLDVCCGTGTIGQCISDKARHVYGLEMAPDAVADARVNAERNGIKNIDYI 505
Query: 655 CAKAEDVMGSLLK 667
KAED LL+
Sbjct: 506 VGKAEDTTDKLLQ 518
Score = 42.7 bits (99), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 751 VVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
++ IVDPPR GLH VIK LRT +++L+++
Sbjct: 532 IIGIVDPPRAGLHQNVIKSLRTLETMKKLVYV 563
>gi|410922567|ref|XP_003974754.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A-like
[Takifugu rubripes]
Length = 617
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 156/496 (31%), Positives = 230/496 (46%), Gaps = 61/496 (12%)
Query: 172 HLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKT 231
+LP+ ++LKKFLA HG+ K T FV F++ ++ A++ + G+ +
Sbjct: 67 NLPKFVGFNDLKKFLAKHGLNPHKIKLFGKQTFAFVTFKNEDERDKAMKMVHGMQWKGQV 126
Query: 232 LKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAGD 291
L V P++ P+ + E A S+ E G+ +
Sbjct: 127 LAVRLAKPKA------DPILRKRKQQGEGEGA-------GQPSAKRPEAGDKEEP----- 168
Query: 292 GSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKS 351
L V+ A +VVTPL ++ Y QL+ K+ + +L++L + N LP +
Sbjct: 169 ---LSVQIA-NVVTPLWNVPYEEQLKRKEEEVVAVLQRLAKEIGNT--NKAMLPWLFAQK 222
Query: 352 REIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAK-PTVGFMLGNFREGVTAVEEPVD 410
+ + C LE I SP YRNKCEF + + T+GF LG ++ G AV P D
Sbjct: 223 GKYNKMCCPLEPIRPSPAQTAYRNKCEFLISMGANGEDKTIGFRLGKYKGGSCAVVGPDD 282
Query: 411 CPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNI 470
+VS A + FQ+F++ + V++ G W+QLTVR R+
Sbjct: 283 TCHVSLEAKRVVCEFQKFIRTTPYSVYSPETYEGHWKQLTVRTTRT-------------- 328
Query: 471 SEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVS 530
E M I D+ V + + K F G S L V + +
Sbjct: 329 -----KEAMAIVFFHPQKLDEEEVKALKDSTRKHFTEGEGRDSGVTSLY-FVREGQRTSP 382
Query: 531 NVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLY 590
N+ D P L++ E IH+ + L+F ISP +FFQVNT AAE LY
Sbjct: 383 NIE--DLPCELVA--------------GEGCIHEELLGLKFRISPHSFFQVNTGAAEVLY 426
Query: 591 SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKN 650
S G+WA L D+ + DVCCGTGTIG++LA RV VIGIE+ AV DA NA++NG+ N
Sbjct: 427 SAVGEWAQLDQDSTVLDVCCGTGTIGISLAKRVKRVIGIELCQEAVEDAKVNAKLNGLTN 486
Query: 651 CRFVCAKAEDVMGSLL 666
F C KAED+ ++L
Sbjct: 487 VEFHCGKAEDIFPNIL 502
Score = 42.4 bits (98), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 750 NVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
NV AIVDPPR GLH VI +R L+RL+++
Sbjct: 509 NVTAIVDPPRAGLHSKVILAIRRAEHLKRLVYV 541
>gi|170039429|ref|XP_001847537.1| RNA m5u methyltransferase [Culex quinquefasciatus]
gi|167863014|gb|EDS26397.1| RNA m5u methyltransferase [Culex quinquefasciatus]
Length = 622
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 129/385 (33%), Positives = 198/385 (51%), Gaps = 45/385 (11%)
Query: 296 KVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIG 355
K ++ + VT LA++SY QL+ K++ + +LK K+CP S E + K +
Sbjct: 153 KRRTLEESVTALAYLSYEDQLKQKQSEMHNVLKGFGDEVWKSCPTMRSYVEEMRKLND-- 210
Query: 356 GLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVS 415
GLPCKLE I GSP V+GYRNKCEFS+G Q + VGF +G++ G VE P ++S
Sbjct: 211 GLPCKLEEIRGSPQVDGYRNKCEFSIGKDGQGEVRVGFRVGSYSNGFLEVESPDKLKHIS 270
Query: 416 EIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNI 475
E +F+EF+Q+S+ V++ G++RQLTVR + G+ + V + E
Sbjct: 271 EKMKSTVKLFEEFVQKSEYEVYSPETYKGYFRQLTVRTSNATGQVMVVIGIHPQELEEEK 330
Query: 476 SEVM---LIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNV 532
+ L++ +S + ++S + + + F +G A P T L + H
Sbjct: 331 LSELRSSLVSWFTSEKAKEIGISSIYFQTIEKFKSGQYAH----PTTHLWGETH------ 380
Query: 533 APADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSL 592
I + I L+F +SP AFFQ+NT +AE LY
Sbjct: 381 -----------------------------IIEEIHGLKFRVSPQAFFQINTPSAEILYQT 411
Query: 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCR 652
D A T + D+CCGTGTIGL A V+G+E+ A A++DA NA+ NGI+NC+
Sbjct: 412 AIDLAGTTKQTSILDICCGTGTIGLCFAKHCKQVLGVEIVAEAIADATHNAKENGIENCK 471
Query: 653 FVCAKAEDVMGSLLKDYLNPLREED 677
F A+D++ SL+++ N ++ED
Sbjct: 472 FYTGNADDLITSLVRN-ANVQKDED 495
>gi|290999475|ref|XP_002682305.1| S-adenosylmethionine-dependent methyltransferase [Naegleria
gruberi]
gi|284095932|gb|EFC49561.1| S-adenosylmethionine-dependent methyltransferase [Naegleria
gruberi]
Length = 580
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 129/384 (33%), Positives = 193/384 (50%), Gaps = 53/384 (13%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIM------KSREIG 355
+ VTPLAH++Y QL K+ ++++ +K+ LPE+ K +++
Sbjct: 137 EAVTPLAHLTYEEQLVKKEGETLDCMREMFSEIKKSYGTA-ELPEYYTIQPEDEKLKDVH 195
Query: 356 GLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVS 415
C GIL SP GYRN CEF+ GY+ + KPTVGF G F +G+ E P D VS
Sbjct: 196 LTWC---GILSSPQTEGYRNNCEFTCGYNSEDKPTVGFRQGLFSQGIFNAESPKDVKIVS 252
Query: 416 EIACKYASIFQEFLQQ--SDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEV 473
+ + + Q+F++Q + + ++G WR + VRE R+
Sbjct: 253 DSMKRAVLVLQKFIEQHHDTYKCYAQKTHTGLWRLMKVRENRN----------------- 295
Query: 474 NISEVMLIAQVSSATFDDAVVNSEFERLAKAFAA--GATASSPSLPLTALVIQDHQGVSN 531
E+++I Q++ + + + L F + +S S+ + L +Q H GVSN
Sbjct: 296 --GEMLIIVQINPTEISEEAMQTIKTNLISHFKSFDKNESSDLSINVKGLFLQQHTGVSN 353
Query: 532 VAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYS 591
AP DAPL LL E I + + L+F ISP +FFQVNT E LYS
Sbjct: 354 AAPTDAPLDLL--------------YGEQTIVEEVLGLKFNISPMSFFQVNTKGVEVLYS 399
Query: 592 LGGDWA------DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEI 645
+W + + +L DVC GTGTIG T+A V VIGIEM S+V+DA +NA++
Sbjct: 400 KVKEWTLESMDKESNKERVLLDVCSGTGTIGSTMASSVSRVIGIEMVESSVNDARKNAQL 459
Query: 646 NGIKNCRFVCAKAEDVMGSLLKDY 669
N I+N FVC KAED + + + ++
Sbjct: 460 NNIQNITFVCGKAEDTITTKMVEH 483
>gi|348682483|gb|EGZ22299.1| hypothetical protein PHYSODRAFT_496969 [Phytophthora sojae]
Length = 812
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 126/328 (38%), Positives = 169/328 (51%), Gaps = 51/328 (15%)
Query: 356 GLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVS 415
GL C ++ I SP+ GYRNKCEFS G+ + KP VGF LG FREG V +P +C NVS
Sbjct: 437 GLCCPMDSIHASPVTEGYRNKCEFSFGFDKENKPCVGFRLGLFREGSVVVSKPDECVNVS 496
Query: 416 EIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNI 475
++ Q ++ S++ V++ SG WR LTVR+ VN
Sbjct: 497 SEMKAVCAVMQNIVETSEILVYDVTTKSGVWRVLTVRQS------------------VNT 538
Query: 476 SEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPA 535
E+M + QV+ A E L T + S +T+ IQ+++G+S AP+
Sbjct: 539 GELMAMVQVNPA----GKTPEERAALKDLLVERLTDENNSFKITSFYIQEYEGLS--APS 592
Query: 536 DAPLRLLSIPKADGEPEESNDVVE-----ARIHDSISNLRFCISPTAFFQVNTLAAEKLY 590
D ND VE ++ + + +RF +SP AFFQVNT AE+LY
Sbjct: 593 D------------------NDPVEHVFGKTKLEEHLLGMRFDVSPNAFFQVNTRGAEELY 634
Query: 591 SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKN 650
SL AD TLL+DVCCGTGTIG+ + V V+GIE+ A DA NA +N +KN
Sbjct: 635 SLVKQHADADEHTLLYDVCCGTGTIGICASKGVAKVVGIEICKPATDDAEVNAVLNDVKN 694
Query: 651 CRFVCAKAEDVMGSLLKDYLNPLREEDE 678
F+ +KAEDVM KD L REE E
Sbjct: 695 VSFINSKAEDVM----KDLLRRKREESE 718
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 24/170 (14%)
Query: 168 KCLVHLPRKWHSDN-LKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGIS 226
K +V KW + L L G+ + +K + ++ GFV F S E+ A+ +++ I
Sbjct: 19 KVIVMNYGKWKAPKALSDVLHAKGVQFFKVQKSRQLSFGFVHFRSAEERAEAMPKMQAID 78
Query: 227 IGNKTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDE 286
+ L+V + +P+ K++K PM G + + + A+ ED + D
Sbjct: 79 WNGEPLEVKDALPK---KSMK-PMRTRGKRDRDGK-----DKADKDEEKQPEEDVSERD- 128
Query: 287 GLAGDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARK 336
RDVVTP A++ Y QLE K+ + ++L K+ R RK
Sbjct: 129 -------------VRDVVTPWANVPYEEQLERKEAEMKKVLVKIVRQTRK 165
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 751 VVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
VVAIVDPPR GLH V++ LR +QR++++
Sbjct: 724 VVAIVDPPRAGLHHNVLRALRACPPVQRIVYV 755
>gi|325185750|emb|CCA20230.1| tRNA (uracil5)methyltransferase putative [Albugo laibachii Nc14]
Length = 798
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 122/312 (39%), Positives = 165/312 (52%), Gaps = 39/312 (12%)
Query: 356 GLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVS 415
GL C E I SP+ GYRNKCEF++G+S +P VGF LG F++G V +P +C NVS
Sbjct: 423 GLCCPFESIEPSPVTEGYRNKCEFTLGFSEADQPCVGFRLGLFKKGSVIVSDPGNCINVS 482
Query: 416 EIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNI 475
I K + Q+ + S+ PV+N G W+QL VR
Sbjct: 483 PIMKKVCEVVQKMITASNFPVFNVETREGVWKQLAVRHS------------------TRT 524
Query: 476 SEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPA 535
++M++ QV+ + DD S+ L K G +L +T+L +Q +QG S A
Sbjct: 525 QQLMVVMQVNMSNLDD----SQQTNLQKVITDGLV---EALDVTSLYMQAYQGSSGGADQ 577
Query: 536 DAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGD 595
+ ++LL N V+ ++ D L F ISP AFFQVNT AAE LY+ +
Sbjct: 578 NGAVKLL----------HGNPVITEKLFD----LEFNISPEAFFQVNTDAAEILYAKVRE 623
Query: 596 WADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVC 655
+ TLL+DVCCGTGTIGL A G VIGIE+ +A DA RNA +N IKN FV
Sbjct: 624 MVQVNKKTLLYDVCCGTGTIGLCCAKDAGKVIGIEICKAATEDAERNAILNQIKNISFVN 683
Query: 656 AKAEDVMGSLLK 667
KAE+VM +L+
Sbjct: 684 DKAEEVMKDILQ 695
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 21/162 (12%)
Query: 176 KW-HSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKV 234
KW S ++ FL ++ + Y KK + + GF+ FE+ E + A+ +L+G+ K L+V
Sbjct: 16 KWKESKCMEDFLTENQVEYSRVKKVRHQSYGFILFETEETKEQALSKLQGLKWKEKLLEV 75
Query: 235 ANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSG 294
+V+P+ K +K ++ + E + ++ NG G D A D S
Sbjct: 76 KSVLPKRSLKPLKKRKKITKDE----------ETDDLPSTMNGK--GTQVDPAEAIDAS- 122
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARK 336
D VTP A + Y QLE K + + L ++ R+ RK
Sbjct: 123 -------DAVTPWATIPYQDQLEKKNALLKRALVRMVRHNRK 157
>gi|326436196|gb|EGD81766.1| hypothetical protein PTSG_02479 [Salpingoeca sp. ATCC 50818]
Length = 735
Score = 199 bits (507), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 152/492 (30%), Positives = 222/492 (45%), Gaps = 71/492 (14%)
Query: 181 NLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240
+LKK L G+ + KK + F+ F + E + A+E L G + L+ P
Sbjct: 153 SLKKMLRKQGVNFTRVKKLRNGDRAFLSFANAEDKQKAMETLNGFKYKGRVLEAVEGKP- 211
Query: 241 SFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLKVKSA 300
++ P N + + + G + + D S +
Sbjct: 212 -----MEDPFVRRMNDRAS-------------------DPGAKRSKTMDVDPSLPPEEQV 247
Query: 301 RDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWI-MKSREIGGLPC 359
D PL Y QL+ K+ + ++K+ R +KA W+ + +R+ G+PC
Sbjct: 248 ADRACPLWRKPYEEQLDIKRRLVVTTMRKMARQLKKANIQDA----WVEIATRKFAGMPC 303
Query: 360 KLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIA 418
L + SP+V+GYR KCEF++G + TVGF +G++ G V EP C NV + A
Sbjct: 304 VLLDTVPSPIVDGYRTKCEFTIGSGPDGQANTVGFRVGSYAAGSITVVEPSLCRNVPDRA 363
Query: 419 CKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEV 478
A Q+F++ S P + + G WRQL VR N +
Sbjct: 364 KTIAKHVQDFVRASSHPHYCLVTHKGCWRQLLVRV-------------------TNSGQA 404
Query: 479 MLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAP 538
+ + ++ A +D V E ERL K F + P+ +++Q S +A D P
Sbjct: 405 LAVLFLTDAELEDGAVAKEAERL-KEFV-----HEHNTPIDIMMLQVDNSASCMA-KDRP 457
Query: 539 LRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWAD 598
I K D + I + + L F ISP +FFQVNT AE LYSL GDW
Sbjct: 458 AP--HIIKGDSQ----------FIEEKLLGLNFRISPDSFFQVNTPGAEVLYSLIGDWCQ 505
Query: 599 LGPDT--LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCA 656
L D ++ D+CCGTGTIG TLA RV VIG+EM AV DA NA+ NGI N +
Sbjct: 506 LTDDKSDVVLDLCCGTGTIGQTLASRVQHVIGVEMVEDAVIDAKANAQRNGITNVTYHTG 565
Query: 657 KAEDVMGSLLKD 668
KAE+V+ L+KD
Sbjct: 566 KAEEVVPELVKD 577
Score = 42.7 bits (99), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 25/32 (78%)
Query: 751 VVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
++A+VDPPR GLHP+V+ +R +QRL+++
Sbjct: 584 LIAVVDPPRAGLHPSVVHAIRRCEGIQRLIYV 615
>gi|312372354|gb|EFR20335.1| hypothetical protein AND_20276 [Anopheles darlingi]
Length = 735
Score = 199 bits (506), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 132/395 (33%), Positives = 196/395 (49%), Gaps = 45/395 (11%)
Query: 289 AGDGSGLKVKSARDVV----TPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSL 344
A +G+G V + R V T LA++SY Q+ K++ + +L+K + P +L
Sbjct: 133 ASEGNGEPVNAKRRTVEASATALAYLSYDEQIVQKQSEMENVLQKFGKELWTTVP---TL 189
Query: 345 PEWIMKSREI-GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVT 403
++ K RE+ GLPC+LE I SP+ +GYRNKCEF+VG Q VGF +G++ G
Sbjct: 190 RSFVEKQRELYAGLPCELEAIRRSPVQDGYRNKCEFTVGKDAQGTKRVGFRVGSYSNGFL 249
Query: 404 AVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDV 463
VE ++ E K +IF+E++Q S L V++ G++RQLTVR + G
Sbjct: 250 EVESVQKLKHIPECMKKTVTIFEEYVQASSLEVYSAETYQGYFRQLTVRMSHATG----- 304
Query: 464 ENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVI 523
+VM+I V +A + + ++ A ++ + VI
Sbjct: 305 -------------QVMVIVGVHLQALSEAEQKDLKQSIVDCLSSEAGKAAGVCSIYFEVI 351
Query: 524 QDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNT 583
Q Q P I G E I D I L+F ISP AFFQ+NT
Sbjct: 352 QKRQQGQYTNP---------IEHLYG---------ETHIDDEILGLKFRISPQAFFQINT 393
Query: 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNA 643
LAA LY D A +T + D+CCGTGTIGL A V+G+++ A+ DA NA
Sbjct: 394 LAAGVLYQCAIDLAAPDNNTSVLDICCGTGTIGLCFARHCKQVLGVDIVPQAIEDAKYNA 453
Query: 644 EINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDE 678
E NGI+NC+F A+D + SL+++ N ++E+ E
Sbjct: 454 ERNGIENCKFYSGNADDFIMSLIRN-ANIVQEQKE 487
>gi|427789529|gb|JAA60216.1| Putative trna uracil-5-methyltransferase [Rhipicephalus pulchellus]
Length = 456
Score = 199 bits (506), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 128/345 (37%), Positives = 177/345 (51%), Gaps = 41/345 (11%)
Query: 326 MLKKLTRNARKACPNGVSLPEWIMKSREIGGL-PCKLEGILGSPLVNGYRNKCEFSVGYS 384
M K + + ARK L WI K RE+ L C LE I SP+V+GYRNK EF+VG
Sbjct: 56 MRKVMVKYARKLEQVNPGLKSWINKQREVHKLGVCPLEPIKASPVVDGYRNKNEFTVGRH 115
Query: 385 LQA-KPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNS 443
L+ + VGF + ++R+G +V D PNV E A K A FQ+++QQS +N +
Sbjct: 116 LETGEVVVGFRISSYRQGSMSVASAADLPNVPETAKKVAQCFQDYVQQSGKEPFNPETHE 175
Query: 444 GFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAK 503
G+WRQLTVR + +M IA + + ++ E E+L +
Sbjct: 176 GYWRQLTVRT-------------------TSKDHIMAIAVIHPQALSEEDISQEKEKLRQ 216
Query: 504 AFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEAR-I 562
F G ++ GV++ + ++D E E V I
Sbjct: 217 FFTEGPGKAA--------------GVTSFH-----FQRFDKKRSDEEQPEYEHVFGTEDI 257
Query: 563 HDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR 622
+++ L F +SP AFFQVNT AAE LY D ADL L D+CCGTGTIGL+LA +
Sbjct: 258 EENLLGLTFQVSPDAFFQVNTPAAEVLYRTAEDVADLNAQKTLLDICCGTGTIGLSLASK 317
Query: 623 VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLK 667
V V G+E+ AV +A RNAE+NGIKN FV KAEDV+ +++
Sbjct: 318 VKRVYGVELCRRAVQNAKRNAELNGIKNASFVQGKAEDVIQDVIR 362
>gi|405967502|gb|EKC32655.1| tRNA (uracil-5-)-methyltransferase-like protein A [Crassostrea
gigas]
Length = 487
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 140/432 (32%), Positives = 196/432 (45%), Gaps = 71/432 (16%)
Query: 252 LSGNAKQASESAVP---GELAEAHAS---SNGHEDGNGNDE--------GLAGDGSGLKV 297
+ G ++ ESA+ G A A A DG G+DE G G+ +
Sbjct: 17 IYGRNEEERESAITKINGHKASATADPLLKKRRADGQGDDEPSVKKRCVGEKGEENLSPD 76
Query: 298 KSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSRE-IGG 356
+ + V+PL +M Y QLE K I Q++K A + N SL +W+ + R+ G
Sbjct: 77 ERLKKAVSPLWNMPYDKQLESKSEEIGQIMKNF---ANQIFKNNASLRDWLTEQRKKYDG 133
Query: 357 LPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVS 415
C+L+ I SP+ GYRNKCEF++G + TVGF G +++G ++V EP N+
Sbjct: 134 HCCELQPIKPSPVQTGYRNKCEFTIGQDIDKNDNTVGFRFGQYKDGTSSVGEPHCLSNIP 193
Query: 416 EIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNI 475
+ FQ+F++ +N ++G WR LTVR RS
Sbjct: 194 DTMKTVVKSFQDFIRLGPYGAYNPETHAGHWRMLTVRTTRS------------------- 234
Query: 476 SEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPA 535
D + E RL + F++G SS L V D + P
Sbjct: 235 ---------------DEEIEKEKTRLHEYFSSGEGRSSGVTCLYFRVYSDRMTGNTTEPY 279
Query: 536 DAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGD 595
L + I +++ N+ F ISP AFFQVNT AE LY +
Sbjct: 280 KHVLG------------------KTNIQETLLNMNFEISPDAFFQVNTAGAEVLYEQIAE 321
Query: 596 WADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVC 655
W T + D+CCGTGTIGLTLA RV VIGIE+ A+ +A RNA INGI N + C
Sbjct: 322 WCGATTTTTVLDICCGTGTIGLTLAKRVSSVIGIELCPEAIENAKRNAHINGITNVTYHC 381
Query: 656 AKAEDVMGSLLK 667
KAEDV+ +K
Sbjct: 382 CKAEDVITQTMK 393
Score = 43.5 bits (101), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 750 NVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
+VVAIVDPPR GLHP V++ LR L++++ +
Sbjct: 399 DVVAIVDPPRAGLHPQVVRALRNSPFLKKIVFV 431
>gi|157107434|ref|XP_001649776.1| RNA m5u methyltransferase [Aedes aegypti]
gi|108884062|gb|EAT48287.1| AAEL000674-PA [Aedes aegypti]
Length = 625
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 160/504 (31%), Positives = 232/504 (46%), Gaps = 84/504 (16%)
Query: 172 HLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVG----FVKFESVEQLKNAVEELEGISI 227
+LP+ + LKK L L S K K M G FV F + + A++ L G
Sbjct: 69 NLPKYYGIAELKKLLNSE--LSLSTNKIKIMRPGCPFLFVCFRDEDSRQAAIKTLNGYIW 126
Query: 228 GNKTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEG 287
NK L+ P +P L K+ +E+A G
Sbjct: 127 KNKKLQAFEAKP--------APDPL---VKRRNEAA-----------------------G 152
Query: 288 LAGDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEW 347
G + K K+ + VT LA++SY QL K++ + +L KL + K CP +L +
Sbjct: 153 TDGVVTVKKRKTLEESVTALAYLSYEDQLVQKQSEMRNVLIKLGKEIWKTCP---ALRPY 209
Query: 348 IMKSREI-GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVE 406
+ + R++ GLPCKLE I SP +GYRNKCEFS+G Q + VGF +G++ G VE
Sbjct: 210 VEEQRKLHDGLPCKLERIRKSPQTDGYRNKCEFSIGKDDQGEIRVGFRVGSYSNGFLDVE 269
Query: 407 EPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENL 466
P + NVS+ ++EF++ S L +++ G +RQLTVR S G + V
Sbjct: 270 SPQNLKNVSDKMKDTVKFYEEFVRNSKLDIYSPETYQGHFRQLTVRTSSSTGDVMVV--- 326
Query: 467 EVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAA--GATASSPSLPLTALVIQ 524
+ I +++E L A F D++V F + G S+ L I
Sbjct: 327 -IGIHPQSLTEEEL------AQFKDSIVEH--------FTSDKGKEIGISSIYLEK--IG 369
Query: 525 DHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTL 584
+ V P + G E I D I L+F ISP AFFQ+NT
Sbjct: 370 KRESGQTVNPVE---------HLHG---------ETHIVDVIHGLKFRISPLAFFQINTP 411
Query: 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAE 644
+AE LY D AD T + D+CCGTGTIGL A V+G+E+ A+ DA NAE
Sbjct: 412 SAEVLYQCAIDLADATQQTSVLDICCGTGTIGLCFAKHCKQVLGVELIPQAIEDAKYNAE 471
Query: 645 INGIKNCRFVCAKAEDVMGSLLKD 668
+N I NC+ A+D++ SL+++
Sbjct: 472 LNKIDNCKLYAGNADDLITSLIRN 495
Score = 40.8 bits (94), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 742 NSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
N+ Q +N+VAIVDPPR GLH I LR L RL+++
Sbjct: 495 NANIQAGENLVAIVDPPRAGLHVRSITQLRNARGLNRLIYV 535
>gi|242006183|ref|XP_002423933.1| HpaII tiny fragments locus 9c protein, putative [Pediculus humanus
corporis]
gi|212507203|gb|EEB11195.1| HpaII tiny fragments locus 9c protein, putative [Pediculus humanus
corporis]
Length = 587
Score = 196 bits (497), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 136/415 (32%), Positives = 198/415 (47%), Gaps = 48/415 (11%)
Query: 255 NAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLKVKSARDVVTPLAHMSYSV 314
N K VP L + + ED L + LKV+ D TP + Y
Sbjct: 122 NLKAGEAKPVPDPLVKKRNLACTDEDDKSKKPKLDNNELFLKVE---DATTPYWQIPYEK 178
Query: 315 QLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYR 374
QLE K + I ++LK+ K P L W+++ + GLPC+L I S ++NGYR
Sbjct: 179 QLEKKTHLIEELLKQYGNKLVKVNPK--VLNWWLLQKAKYNGLPCELFPIKYSDVINGYR 236
Query: 375 NKCEFSVGYSLQ-AKPTVGFMLGNFREGVTAVEEPVD-CPNVSEIACKYASIFQEFLQQS 432
NKCEFS+G + + + TVGF LG++ +G T+V PVD PNV + A IFQ+F+Q S
Sbjct: 237 NKCEFSIGINKENGEKTVGFRLGSYAQGSTSVA-PVDNVPNVPQQMKDAAKIFQKFVQNS 295
Query: 433 DLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDA 492
+ V+N N G W+QLTVR G E+M+I + A
Sbjct: 296 EYDVFNYELNQGHWKQLTVRYG------------------FRTKELMIIIGIVPQELTQA 337
Query: 493 VVNSEFERLAKAFA--AGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGE 550
++ + F G SL L + + Q + E
Sbjct: 338 DLSLIKNNILNYFVEGEGKLCQVKSLYLQLMKKKRTQ--------------------NDE 377
Query: 551 PEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCC 610
+ E I + I F ISP AFFQ+NT AE LY + ++L D L DVCC
Sbjct: 378 VLYEHLFGETYITEKILGKTFRISPQAFFQINTNVAEILYDSIAELSELSKDVTLLDVCC 437
Query: 611 GTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
GTG+IG+ L+ + G V+G+E+++ A++DA NAE+NG+ N +F KAED++ +
Sbjct: 438 GTGSIGICLSDKCGEVLGLEISSEAIADAKANAELNGVNNTQFFSGKAEDILNCV 492
>gi|344295050|ref|XP_003419227.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A-like
[Loxodonta africana]
Length = 797
Score = 192 bits (488), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 148/498 (29%), Positives = 216/498 (43%), Gaps = 78/498 (15%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L ++PR ++++FL G+ K FV F S + A+ L G
Sbjct: 249 LQNVPRHASFSDVRRFLGRFGLQPHKTKLFGQPPCAFVTFRSAAERDKALRVLHGALWKG 308
Query: 230 KTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLA 289
+ L V P++ PM + +G G
Sbjct: 309 RPLSVRLARPKA------DPM-----------------------AKRRRREGEGEP---- 335
Query: 290 GDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIM 349
V DVVTPL + Y+ QLE K+ Q+L++L + N LP +
Sbjct: 336 ------PVTHIADVVTPLWTVPYAEQLERKRLECEQVLQRLAKEI--GSTNRALLPWLLT 387
Query: 350 KSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEP 408
+ + C LEG+ SPL YRNKCEF VG + + TVG LG ++ G AV P
Sbjct: 388 QRHKHNKACCPLEGVRPSPLQTEYRNKCEFLVGVGVDGEDNTVGCRLGRYKGGTCAVAAP 447
Query: 409 VDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEV 468
+ ++ E A + FQEF++ + ++ +G+W+QLTVR R
Sbjct: 448 FETMHIPEAAKQVVRAFQEFIRSTPYSAYDPETYAGYWKQLTVRTSRR------------ 495
Query: 469 NISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQG 528
+ M IA + LA+ F G +S G
Sbjct: 496 -------GQAMAIAYFHPQKLSQEELAGLKTCLAQHFTEGPGKAS--------------G 534
Query: 529 VSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEK 588
V+ + + R P +G P E + + IH+ + L F ISP AFFQVNT AAE
Sbjct: 535 VTCLYFVEEGQR--KTPSQEGLPLE-HMAGDRYIHEDLLGLTFQISPHAFFQVNTPAAEV 591
Query: 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI 648
LY++ DWA L ++ + DVCCGTGTIGL LA +V V+GIE+ AV DA NA +N +
Sbjct: 592 LYTVIQDWAQLDAESTVLDVCCGTGTIGLALARKVKKVVGIELCQEAVEDARVNACMNKL 651
Query: 649 KNCRFVCAKAEDVMGSLL 666
N F C +AED++ +L+
Sbjct: 652 SNVEFHCGRAEDLVATLV 669
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 749 KNVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
+ ++AI+DPPR GLH VI +R A L+RLL++
Sbjct: 675 QQLIAILDPPRAGLHSKVILAIRRAANLKRLLYV 708
>gi|395858828|ref|XP_003801760.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A [Otolemur
garnettii]
Length = 617
Score = 192 bits (487), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 155/500 (31%), Positives = 215/500 (43%), Gaps = 82/500 (16%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L ++PR ++++FL G+ K FV F S + A+ L G
Sbjct: 69 LQNVPRHASFSDVRRFLGRFGLQPHKTKLFGQPPCAFVTFRSAAERDKALRVLHGALWKG 128
Query: 230 KTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLA 289
+ L V P++ L+ +Q E P
Sbjct: 129 RPLSVRLARPKA--------DPLAKRRRQEGEGEPP------------------------ 156
Query: 290 GDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIM 349
V DVVTPL + Y+ QLE K+ Q+L+KL + N LP W++
Sbjct: 157 -------VTHVADVVTPLWTVPYAEQLERKRLECEQVLQKLAKEIGNT--NCAMLP-WLL 206
Query: 350 KSR-EIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEE 407
R + C LEG+ SP YRNKCEF VG + + TVG LG ++ G AV
Sbjct: 207 SQRHKHNKACCPLEGVHPSPQQTEYRNKCEFLVGVGVDGEDNTVGCRLGKYKGGSCAVAA 266
Query: 408 PVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLE 467
P D ++ E + FQEF++ + ++ +G WRQLTVR R
Sbjct: 267 PFDTVHIPEATKQVVKAFQEFIRSTPYSAYDPETYTGHWRQLTVRTSRR----------- 315
Query: 468 VNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQ 527
+ M IA + LA+ F AG +S
Sbjct: 316 --------GQAMAIAHFHPQKLSPGELAELKASLAQHFVAGPGKAS-------------- 353
Query: 528 GVSNVAPADAPLRLLSIPKADGEPEESNDVVEAR-IHDSISNLRFCISPTAFFQVNTLAA 586
GV+ + + R P +G P E V R IH+ + L F ISP AFFQVNTLAA
Sbjct: 354 GVTCLYFVEEGQR--KTPSQEGLPLE--HVAGDRCIHEDLLGLTFRISPHAFFQVNTLAA 409
Query: 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN 646
E LY++ +WA L + + DVCCGTGTIGL LA +V VIG+E+ AV DA NA N
Sbjct: 410 EVLYTVIQEWAQLDGGSTVLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDAWVNAHTN 469
Query: 647 GIKNCRFVCAKAEDVMGSLL 666
+ N F C +AED+M +L+
Sbjct: 470 ELSNVEFHCGRAEDLMPALI 489
>gi|16552598|dbj|BAB71349.1| unnamed protein product [Homo sapiens]
Length = 562
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 155/500 (31%), Positives = 219/500 (43%), Gaps = 82/500 (16%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L ++PR ++++FL G+ K FV F S + A+ L G
Sbjct: 77 LQNVPRHASFSDVRRFLGRFGLQPHKTKLFGQPPCAFVTFRSAAERDKALRVLHGALWKG 136
Query: 230 KTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLA 289
+ L V P++ PM + +Q ES P
Sbjct: 137 RPLSVRLARPKA------DPM--ARRRRQEGESEPP------------------------ 164
Query: 290 GDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIM 349
V DVVTPL + Y+ QLE K+ Q+L+KL + N LP W++
Sbjct: 165 -------VTRVADVVTPLWTVPYAEQLERKQLECEQVLQKLAKEIGST--NRALLP-WLL 214
Query: 350 KSR-EIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEE 407
+ R + C LEG+ SP YRNKCEF VG + + TVG LG ++ G AV
Sbjct: 215 EQRHKHNKACCPLEGVRPSPQQTEYRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAA 274
Query: 408 PVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLE 467
P D ++ E + FQEF++ + ++ +G W+QLTVR R
Sbjct: 275 PFDTVHIPEATKQVVKAFQEFIRSTPYSAYDPETYTGHWKQLTVRTSRR----------- 323
Query: 468 VNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQ 527
+ M IA + LA+ F AG +S
Sbjct: 324 --------HQAMAIAYFHPQKLSPEELAELKTSLAQHFTAGPGRAS-------------- 361
Query: 528 GVSNVAPADAPLRLLSIPKADGEPEESNDVVEAR-IHDSISNLRFCISPTAFFQVNTLAA 586
GV+ + + R P +G P E V R IH+ + L F ISP AFFQVNT AA
Sbjct: 362 GVTCLYFVEEGQR--KTPSQEGLPLE--HVAGDRCIHEDLLGLTFRISPHAFFQVNTPAA 417
Query: 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN 646
E LY++ DWA L +++ DVCCGTGTIGL LA +V VIG+E+ AV DA NA+ N
Sbjct: 418 EVLYTVIQDWAQLDAGSMVLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDARVNAQDN 477
Query: 647 GIKNCRFVCAKAEDVMGSLL 666
+ N F C +AED++ +L+
Sbjct: 478 ELSNVEFHCGRAEDLVPTLV 497
>gi|384229064|ref|NP_001244923.1| tRNA (uracil-5-)-methyltransferase homolog A isoform b [Homo
sapiens]
gi|119623401|gb|EAX02996.1| HpaII tiny fragments locus 9C, isoform CRA_b [Homo sapiens]
gi|119623402|gb|EAX02997.1| HpaII tiny fragments locus 9C, isoform CRA_b [Homo sapiens]
Length = 562
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 155/500 (31%), Positives = 219/500 (43%), Gaps = 82/500 (16%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L ++PR ++++FL G+ K FV F S + A+ L G
Sbjct: 77 LQNVPRHASFSDVRRFLGRFGLQPHKTKLFGQPPCAFVTFRSAAERDKALRVLHGALWKG 136
Query: 230 KTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLA 289
+ L V P++ PM + +Q ES P
Sbjct: 137 RPLSVRLARPKA------DPM--ARRRRQEGESEPP------------------------ 164
Query: 290 GDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIM 349
V DVVTPL + Y+ QLE K+ Q+L+KL + N LP W++
Sbjct: 165 -------VTRVADVVTPLWTVPYAEQLERKQLECEQVLQKLAKEIGST--NRALLP-WLL 214
Query: 350 KSR-EIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEE 407
+ R + C LEG+ SP YRNKCEF VG + + TVG LG ++ G AV
Sbjct: 215 EQRHKHNKACCPLEGVRPSPQQTEYRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAA 274
Query: 408 PVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLE 467
P D ++ E + FQEF++ + ++ +G W+QLTVR R
Sbjct: 275 PFDTVHIPEATKQVVKAFQEFIRSTPYSAYDPETYTGHWKQLTVRTSRR----------- 323
Query: 468 VNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQ 527
+ M IA + LA+ F AG +S
Sbjct: 324 --------HQAMAIAYFHPQKLSPEELAELKTSLAQHFTAGPGRAS-------------- 361
Query: 528 GVSNVAPADAPLRLLSIPKADGEPEESNDVVEAR-IHDSISNLRFCISPTAFFQVNTLAA 586
GV+ + + R P +G P E V R IH+ + L F ISP AFFQVNT AA
Sbjct: 362 GVTCLYFVEEGQR--KTPSQEGLPLE--HVAGDRCIHEDLLGLTFRISPHAFFQVNTPAA 417
Query: 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN 646
E LY++ DWA L +++ DVCCGTGTIGL LA +V VIG+E+ AV DA NA+ N
Sbjct: 418 EVLYTVIQDWAQLDAGSMVLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDARVNAQDN 477
Query: 647 GIKNCRFVCAKAEDVMGSLL 666
+ N F C +AED++ +L+
Sbjct: 478 ELSNVEFHCGRAEDLVPTLV 497
>gi|34222389|ref|NP_892029.2| tRNA (uracil-5-)-methyltransferase homolog A isoform a [Homo
sapiens]
gi|51173878|ref|NP_073564.3| tRNA (uracil-5-)-methyltransferase homolog A isoform a [Homo
sapiens]
gi|51316479|sp|Q8IZ69.2|TRM2A_HUMAN RecName: Full=tRNA (uracil-5-)-methyltransferase homolog A;
AltName: Full=HpaII tiny fragments locus 9c protein
gi|33869861|gb|AAH17184.2| TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae) [Homo
sapiens]
gi|39644624|gb|AAH13352.2| TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae) [Homo
sapiens]
gi|47678239|emb|CAG30240.1| Em:AC006547.2 [Homo sapiens]
gi|80477429|gb|AAI08252.1| TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae) [Homo
sapiens]
gi|109451268|emb|CAK54495.1| Em:AC006547.C22.2 [synthetic construct]
gi|109451846|emb|CAK54794.1| Em:AC006547.C22.2 [synthetic construct]
gi|119623400|gb|EAX02995.1| HpaII tiny fragments locus 9C, isoform CRA_a [Homo sapiens]
gi|261857608|dbj|BAI45326.1| TRM2 tRNA methyltransferase 2 homolog A [synthetic construct]
Length = 625
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 155/500 (31%), Positives = 218/500 (43%), Gaps = 82/500 (16%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L ++PR ++++FL G+ K FV F S + A+ L G
Sbjct: 77 LQNVPRHASFSDVRRFLGRFGLQPHKTKLFGQPPCAFVTFRSAAERDKALRVLHGALWKG 136
Query: 230 KTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLA 289
+ L V P++ PM + +Q ES P
Sbjct: 137 RPLSVRLARPKA------DPM--ARRRRQEGESEPP------------------------ 164
Query: 290 GDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIM 349
V DVVTPL + Y+ QLE K+ Q+L+KL + N LP W++
Sbjct: 165 -------VTRVADVVTPLWTVPYAEQLERKQLECEQVLQKLAKEIGST--NRALLP-WLL 214
Query: 350 KSREIGGLPC-KLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEE 407
+ R C LEG+ SP YRNKCEF VG + + TVG LG ++ G AV
Sbjct: 215 EQRHKHNKACCPLEGVRPSPQQTEYRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAA 274
Query: 408 PVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLE 467
P D ++ E + FQEF++ + ++ +G W+QLTVR R
Sbjct: 275 PFDTVHIPEATKQVVKAFQEFIRSTPYSAYDPETYTGHWKQLTVRTSRR----------- 323
Query: 468 VNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQ 527
+ M IA + LA+ F AG +S
Sbjct: 324 --------HQAMAIAYFHPQKLSPEELAELKTSLAQHFTAGPGRAS-------------- 361
Query: 528 GVSNVAPADAPLRLLSIPKADGEPEESNDVVEAR-IHDSISNLRFCISPTAFFQVNTLAA 586
GV+ + + R P +G P E V R IH+ + L F ISP AFFQVNT AA
Sbjct: 362 GVTCLYFVEEGQR--KTPSQEGLPLE--HVAGDRCIHEDLLGLTFRISPHAFFQVNTPAA 417
Query: 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN 646
E LY++ DWA L +++ DVCCGTGTIGL LA +V VIG+E+ AV DA NA+ N
Sbjct: 418 EVLYTVIQDWAQLDAGSMVLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDARVNAQDN 477
Query: 647 GIKNCRFVCAKAEDVMGSLL 666
+ N F C +AED++ +L+
Sbjct: 478 ELSNVEFHCGRAEDLVPTLV 497
>gi|114685141|ref|XP_001167055.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A isoform 5
[Pan troglodytes]
gi|410214294|gb|JAA04366.1| TRM2 tRNA methyltransferase 2 homolog A [Pan troglodytes]
gi|410214296|gb|JAA04367.1| TRM2 tRNA methyltransferase 2 homolog A [Pan troglodytes]
gi|410249454|gb|JAA12694.1| TRM2 tRNA methyltransferase 2 homolog A [Pan troglodytes]
gi|410335151|gb|JAA36522.1| TRM2 tRNA methyltransferase 2 homolog A [Pan troglodytes]
Length = 625
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 155/500 (31%), Positives = 217/500 (43%), Gaps = 82/500 (16%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L ++PR ++++FL G+ K FV F S + A+ L G
Sbjct: 77 LQNVPRHASFSDVRRFLGRFGLQPHKTKLFGQPPCAFVTFRSAAERDKALRVLHGALWKG 136
Query: 230 KTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLA 289
+ L V P++ PM + +Q ES P
Sbjct: 137 RPLSVRLARPKA------DPM--ARRRRQEGESEPP------------------------ 164
Query: 290 GDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIM 349
V DVVTPL + Y+ QLE K+ Q+L+KL + N LP W++
Sbjct: 165 -------VTRVADVVTPLWTVPYAEQLERKQLECEQVLQKLAKEIGST--NRALLP-WLL 214
Query: 350 KSREIGGLPC-KLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEE 407
+ R C LEG+ SP YRNKCEF VG + + TVG LG ++ G AV
Sbjct: 215 EQRHKHNKACCPLEGVRPSPQQTEYRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAA 274
Query: 408 PVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLE 467
P D ++ E + FQEF++ + ++ +G W+QLTVR R
Sbjct: 275 PFDTVHIPEATKQVVKAFQEFIRSTPYSAYDPETYTGHWKQLTVRTSRR----------- 323
Query: 468 VNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQ 527
+ M IA + LA+ F AG +S
Sbjct: 324 --------RQAMAIAYFHPQKLSPEELEELKTSLAQHFTAGPGRAS-------------- 361
Query: 528 GVSNVAPADAPLRLLSIPKADGEPEESNDVVEAR-IHDSISNLRFCISPTAFFQVNTLAA 586
GV+ + + R P +G P E V R IH+ + L F ISP AFFQVNT AA
Sbjct: 362 GVTCLYFVEEGQR--KTPSQEGLPLE--HVAGDRCIHEDLLGLTFRISPHAFFQVNTPAA 417
Query: 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN 646
E LY++ DWA L + + DVCCGTGTIGL LA +V VIG+E+ AV DA NA+ N
Sbjct: 418 EVLYTVIQDWAQLDAGSTVLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDARVNAQDN 477
Query: 647 GIKNCRFVCAKAEDVMGSLL 666
+ N F C +AED++ +L+
Sbjct: 478 ELSNVEFHCGRAEDLVPTLV 497
>gi|114685145|ref|XP_001166997.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A isoform 4
[Pan troglodytes]
Length = 562
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 155/500 (31%), Positives = 218/500 (43%), Gaps = 82/500 (16%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L ++PR ++++FL G+ K FV F S + A+ L G
Sbjct: 77 LQNVPRHASFSDVRRFLGRFGLQPHKTKLFGQPPCAFVTFRSAAERDKALRVLHGALWKG 136
Query: 230 KTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLA 289
+ L V P++ PM + +Q ES P
Sbjct: 137 RPLSVRLARPKA------DPM--ARRRRQEGESEPP------------------------ 164
Query: 290 GDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIM 349
V DVVTPL + Y+ QLE K+ Q+L+KL + N LP W++
Sbjct: 165 -------VTRVADVVTPLWTVPYAEQLERKQLECEQVLQKLAKEIGST--NRALLP-WLL 214
Query: 350 KSR-EIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEE 407
+ R + C LEG+ SP YRNKCEF VG + + TVG LG ++ G AV
Sbjct: 215 EQRHKHNKACCPLEGVRPSPQQTEYRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAA 274
Query: 408 PVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLE 467
P D ++ E + FQEF++ + ++ +G W+QLTVR R
Sbjct: 275 PFDTVHIPEATKQVVKAFQEFIRSTPYSAYDPETYTGHWKQLTVRTSRR----------- 323
Query: 468 VNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQ 527
+ M IA + LA+ F AG +S
Sbjct: 324 --------RQAMAIAYFHPQKLSPEELEELKTSLAQHFTAGPGRAS-------------- 361
Query: 528 GVSNVAPADAPLRLLSIPKADGEPEESNDVVEAR-IHDSISNLRFCISPTAFFQVNTLAA 586
GV+ + + R P +G P E V R IH+ + L F ISP AFFQVNT AA
Sbjct: 362 GVTCLYFVEEGQR--KTPSQEGLPLE--HVAGDRCIHEDLLGLTFRISPHAFFQVNTPAA 417
Query: 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN 646
E LY++ DWA L + + DVCCGTGTIGL LA +V VIG+E+ AV DA NA+ N
Sbjct: 418 EVLYTVIQDWAQLDAGSTVLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDARVNAQDN 477
Query: 647 GIKNCRFVCAKAEDVMGSLL 666
+ N F C +AED++ +L+
Sbjct: 478 ELSNVEFHCGRAEDLVPTLV 497
>gi|397485979|ref|XP_003814113.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A isoform 2
[Pan paniscus]
Length = 562
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 155/500 (31%), Positives = 218/500 (43%), Gaps = 82/500 (16%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L ++PR ++++FL G+ K FV F S + A+ L G
Sbjct: 77 LQNVPRHASFSDVRRFLGRFGLQPHKTKLFGQPPCAFVTFRSAAERDKALRVLHGALWKG 136
Query: 230 KTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLA 289
+ L V P++ PM + +Q ES P
Sbjct: 137 RPLSVRLARPKA------DPM--ARRRRQEGESEPP------------------------ 164
Query: 290 GDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIM 349
V DVVTPL + Y+ QLE K+ Q+L+KL + N LP W++
Sbjct: 165 -------VTRVADVVTPLWTVPYAEQLERKQLECEQVLQKLAKEIGST--NRALLP-WLL 214
Query: 350 KSR-EIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEE 407
+ R + C LEG+ SP YRNKCEF VG + + TVG LG ++ G AV
Sbjct: 215 EQRHKHNKACCPLEGVRPSPQQTEYRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAA 274
Query: 408 PVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLE 467
P D ++ E + FQEF++ + ++ +G W+QLTVR R
Sbjct: 275 PFDTVHIPEATKQVVKAFQEFIRSTPYSAYDPETYTGHWKQLTVRTSRR----------- 323
Query: 468 VNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQ 527
+ M IA + LA+ F AG +S
Sbjct: 324 --------RQAMAIAYFHPQKLSPEELAELKTSLAQHFTAGPGRAS-------------- 361
Query: 528 GVSNVAPADAPLRLLSIPKADGEPEESNDVVEAR-IHDSISNLRFCISPTAFFQVNTLAA 586
GV+ + + R P +G P E V R IH+ + L F ISP AFFQVNT AA
Sbjct: 362 GVTCLYFVEEGQR--KTPSQEGLPLE--HVAGDRCIHEDLLGLTFRISPHAFFQVNTPAA 417
Query: 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN 646
E LY++ DWA L + + DVCCGTGTIGL LA +V VIG+E+ AV DA NA+ N
Sbjct: 418 EVLYTVIQDWAQLDAGSTVLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDARVNAQDN 477
Query: 647 GIKNCRFVCAKAEDVMGSLL 666
+ N F C +AED++ +L+
Sbjct: 478 ELSNVEFHCGRAEDLVPTLV 497
>gi|426393552|ref|XP_004063082.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A isoform 1
[Gorilla gorilla gorilla]
Length = 625
Score = 190 bits (482), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 155/500 (31%), Positives = 218/500 (43%), Gaps = 82/500 (16%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L ++PR ++++FL G+ K FV F S + A+ L G
Sbjct: 77 LQNVPRHASFSDVRRFLGRFGLQPHKTKLFGQPPCAFVTFRSAAERDKALRVLHGALWKG 136
Query: 230 KTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLA 289
+ L V P++ PM + +Q ES P
Sbjct: 137 RPLSVRLARPKA------DPM--ARRRRQEGESEPP------------------------ 164
Query: 290 GDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIM 349
V DVVTPL + Y+ QLE K+ Q+L+KL + N LP W++
Sbjct: 165 -------VTRVADVVTPLWTVPYAEQLERKQLECEQVLQKLAKEIGST--NRALLP-WLL 214
Query: 350 KSR-EIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEE 407
+ R + C LEG+ SP YRNKCEF VG + + TVG LG ++ G AV
Sbjct: 215 EQRHKHNKACCPLEGVRPSPQQTEYRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAA 274
Query: 408 PVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLE 467
P D ++ E + FQEF++ + ++ +G W+QLTVR R
Sbjct: 275 PFDTVHIPEATKQVVKAFQEFIRSTPYSAYDPETYTGHWKQLTVRTSRR----------- 323
Query: 468 VNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQ 527
+ M IA + LA+ F AG +S
Sbjct: 324 --------RQAMAIAYFHPQKLSPEELAELKTSLAQHFTAGPGRAS-------------- 361
Query: 528 GVSNVAPADAPLRLLSIPKADGEPEESNDVVEAR-IHDSISNLRFCISPTAFFQVNTLAA 586
GV+ + + R P +G P E V R IH+ + L F ISP AFFQVNT AA
Sbjct: 362 GVTCLYFVEEGQR--KTPSQEGLPLE--HVAGDRCIHEDLLGLTFRISPHAFFQVNTPAA 417
Query: 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN 646
E LY++ DWA L + + DVCCGTGTIGL LA +V VIG+E+ AV DA NA+ N
Sbjct: 418 EVLYTVIQDWAQLDAGSTVLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDARVNAQDN 477
Query: 647 GIKNCRFVCAKAEDVMGSLL 666
+ N F C +AED++ +L+
Sbjct: 478 ELSNVEFHCGRAEDLVPTLV 497
>gi|426393554|ref|XP_004063083.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A isoform 2
[Gorilla gorilla gorilla]
Length = 562
Score = 190 bits (482), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 155/500 (31%), Positives = 218/500 (43%), Gaps = 82/500 (16%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L ++PR ++++FL G+ K FV F S + A+ L G
Sbjct: 77 LQNVPRHASFSDVRRFLGRFGLQPHKTKLFGQPPCAFVTFRSAAERDKALRVLHGALWKG 136
Query: 230 KTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLA 289
+ L V P++ PM + +Q ES P
Sbjct: 137 RPLSVRLARPKA------DPM--ARRRRQEGESEPP------------------------ 164
Query: 290 GDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIM 349
V DVVTPL + Y+ QLE K+ Q+L+KL + N LP W++
Sbjct: 165 -------VTRVADVVTPLWTVPYAEQLERKQLECEQVLQKLAKEIGST--NRALLP-WLL 214
Query: 350 KSR-EIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEE 407
+ R + C LEG+ SP YRNKCEF VG + + TVG LG ++ G AV
Sbjct: 215 EQRHKHNKACCPLEGVRPSPQQTEYRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAA 274
Query: 408 PVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLE 467
P D ++ E + FQEF++ + ++ +G W+QLTVR R
Sbjct: 275 PFDTVHIPEATKQVVKAFQEFIRSTPYSAYDPETYTGHWKQLTVRTSRR----------- 323
Query: 468 VNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQ 527
+ M IA + LA+ F AG +S
Sbjct: 324 --------RQAMAIAYFHPQKLSPEELAELKTSLAQHFTAGPGRAS-------------- 361
Query: 528 GVSNVAPADAPLRLLSIPKADGEPEESNDVVEAR-IHDSISNLRFCISPTAFFQVNTLAA 586
GV+ + + R P +G P E V R IH+ + L F ISP AFFQVNT AA
Sbjct: 362 GVTCLYFVEEGQR--KTPSQEGLPLE--HVAGDRCIHEDLLGLTFRISPHAFFQVNTPAA 417
Query: 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN 646
E LY++ DWA L + + DVCCGTGTIGL LA +V VIG+E+ AV DA NA+ N
Sbjct: 418 EVLYTVIQDWAQLDAGSTVLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDARVNAQDN 477
Query: 647 GIKNCRFVCAKAEDVMGSLL 666
+ N F C +AED++ +L+
Sbjct: 478 ELSNVEFHCGRAEDLVPTLV 497
>gi|397485977|ref|XP_003814112.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A isoform 1
[Pan paniscus]
Length = 625
Score = 190 bits (482), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 155/500 (31%), Positives = 218/500 (43%), Gaps = 82/500 (16%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L ++PR ++++FL G+ K FV F S + A+ L G
Sbjct: 77 LQNVPRHASFSDVRRFLGRFGLQPHKTKLFGQPPCAFVTFRSAAERDKALRVLHGALWKG 136
Query: 230 KTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLA 289
+ L V P++ PM + +Q ES P
Sbjct: 137 RPLSVRLARPKA------DPM--ARRRRQEGESEPP------------------------ 164
Query: 290 GDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIM 349
V DVVTPL + Y+ QLE K+ Q+L+KL + N LP W++
Sbjct: 165 -------VTRVADVVTPLWTVPYAEQLERKQLECEQVLQKLAKEIGST--NRALLP-WLL 214
Query: 350 KSR-EIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEE 407
+ R + C LEG+ SP YRNKCEF VG + + TVG LG ++ G AV
Sbjct: 215 EQRHKHNKACCPLEGVRPSPQQTEYRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAA 274
Query: 408 PVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLE 467
P D ++ E + FQEF++ + ++ +G W+QLTVR R
Sbjct: 275 PFDTVHIPEATKQVVKAFQEFIRSTPYSAYDPETYTGHWKQLTVRTSRR----------- 323
Query: 468 VNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQ 527
+ M IA + LA+ F AG +S
Sbjct: 324 --------RQAMAIAYFHPQKLSPEELAELKTSLAQHFTAGPGRAS-------------- 361
Query: 528 GVSNVAPADAPLRLLSIPKADGEPEESNDVVEAR-IHDSISNLRFCISPTAFFQVNTLAA 586
GV+ + + R P +G P E V R IH+ + L F ISP AFFQVNT AA
Sbjct: 362 GVTCLYFVEEGQR--KTPSQEGLPLE--HVAGDRCIHEDLLGLTFRISPHAFFQVNTPAA 417
Query: 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN 646
E LY++ DWA L + + DVCCGTGTIGL LA +V VIG+E+ AV DA NA+ N
Sbjct: 418 EVLYTVIQDWAQLDAGSTVLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDARVNAQDN 477
Query: 647 GIKNCRFVCAKAEDVMGSLL 666
+ N F C +AED++ +L+
Sbjct: 478 ELSNVEFHCGRAEDLVPTLV 497
>gi|403304276|ref|XP_003942731.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A [Saimiri
boliviensis boliviensis]
Length = 625
Score = 190 bits (482), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 153/499 (30%), Positives = 221/499 (44%), Gaps = 80/499 (16%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L ++PR ++++FLA G+ K FV F S + A+ L G
Sbjct: 77 LQNVPRHASFSDVRRFLARFGLQPHKTKLFGQPPCAFVTFRSAAERDKALRVLHGALWKG 136
Query: 230 KTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLA 289
+ L V P++ PM A++ + G E LA
Sbjct: 137 RPLSVRLARPKA------DPM-----ARRRRQ--------------------EGESEPLA 165
Query: 290 GDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIM 349
DVVTPL + Y+ QLE K+ Q+L+KL + N LP W++
Sbjct: 166 --------TRVADVVTPLWTVPYAEQLERKRLECEQVLQKLAKEIGST--NRALLP-WLL 214
Query: 350 KSREIGGLPC-KLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEE 407
+ R C LEG+ SP YRNKCEF VG + + TVG LG ++ G AV
Sbjct: 215 EQRHRHNKACCPLEGVRPSPQQTEYRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAA 274
Query: 408 PVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLE 467
P D ++ E + FQE+++ + ++ +G W+QLTVR R
Sbjct: 275 PFDTVHIPEATKQVVKAFQEYIRSTPYSAYDPETYTGHWKQLTVRTSRR----------- 323
Query: 468 VNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQ 527
+ M IA + + LA+ F AG +S
Sbjct: 324 --------RQAMAIAYFHPQKLNPEELAELKASLAQHFMAGPGRAS-------------- 361
Query: 528 GVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAE 587
GV+ + + R P +G P E + + IH+ + L F ISP AFFQVNT AAE
Sbjct: 362 GVTCLYFVEEGQR--KTPSQEGLPLE-HVAGDQCIHEDLLGLTFRISPHAFFQVNTPAAE 418
Query: 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEING 647
LY++ DWA L ++ + DVCCGTGTIGL LA +V VIG+E+ AV DA NA+ N
Sbjct: 419 VLYTVIRDWAQLDTESTVLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDARVNAQDNE 478
Query: 648 IKNCRFVCAKAEDVMGSLL 666
+ N F C +AED++ +L+
Sbjct: 479 LSNVEFHCGRAEDLVPALV 497
>gi|332017236|gb|EGI58019.1| tRNA (uracil-5-)-methyltransferase-like protein A [Acromyrmex
echinatior]
Length = 562
Score = 190 bits (482), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 157/507 (30%), Positives = 232/507 (45%), Gaps = 86/507 (16%)
Query: 173 LPRKWHSDNLKKFLADHGILYKSAKK--KKGMTVGFVKFESVEQLKNAVEELEGISIGNK 230
LP+ + KK L D L K +KG + +V F S E + A+ + GI N
Sbjct: 34 LPKYYGIGEFKKLLNDKLDLQSCKVKPPRKGSSWLYVCFRSEECRQRAITSINGILWKNN 93
Query: 231 TLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAG 290
L A V AK A + V +L E SSN + D +
Sbjct: 94 KL-TAQV------------------AKPAPDPFVKKKLEEE--SSNKRLKTDTEDSNCS- 131
Query: 291 DGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMK 350
+ + + TPL +M YS QLE K+ + +L K+ ++ +L EWI
Sbjct: 132 -----PMDRIKFITTPLWNMPYSDQLEFKQKEMKSILIKI---GQQILTESKTLTEWINS 183
Query: 351 SREI-GGLPCKLEGILGSPLVNGYRNKCEFSVGY-SLQAKPTVGFMLGNFREGVTAVEEP 408
+++ GLPCKL+ IL + + YRNKCEF+VG S Q+K +GF L + G TAV P
Sbjct: 184 QKKLYDGLPCKLQNILSADVTEAYRNKCEFTVGKDSEQSKIMIGFRLSTYASGSTAVG-P 242
Query: 409 VD----CPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVE 464
+D P +IA K I + F+++S+L +N +SG+WRQ+T R R+
Sbjct: 243 IDDLCHIPENMKIAIK---ILETFIRESNLEPFNPVDHSGYWRQVTARTTRA-------- 291
Query: 465 NLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQ 524
+ +MLI + + ++ +L F G + +T+L Q
Sbjct: 292 -----------NHLMLIVGIHPQNLNSNELDMLKSQLKIFFETGKGVDA---HVTSLYFQ 337
Query: 525 DHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEA----RIHDSISNLRFCISPTAFFQ 580
+I K E S+ + I +++ ++F +SP AFFQ
Sbjct: 338 ------------------TIDKKSIGGESSDTLYHINGTEYIEETLLGMKFRVSPQAFFQ 379
Query: 581 VNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAH 640
VNTL AE LY D A+ DT L DVCCGTGTIGL + G V+G+E+ A+ DA
Sbjct: 380 VNTLGAEVLYKAAIDLAEPTMDTALLDVCCGTGTIGLCFSKYCGEVLGVEIIPDAIQDAK 439
Query: 641 RNAEINGIKNCRFVCAKAEDVMGSLLK 667
NA N IKNC F KAED++ +++
Sbjct: 440 ENAVKNEIKNCEFFVGKAEDILLPIIQ 466
>gi|355784798|gb|EHH65649.1| hypothetical protein EGM_02448 [Macaca fascicularis]
Length = 624
Score = 189 bits (480), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 152/499 (30%), Positives = 216/499 (43%), Gaps = 80/499 (16%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L ++PR ++++FL G+ K FV F S + A+ L G
Sbjct: 77 LQNVPRHASFSDVRRFLGRFGLQPHKTKLFGQPPCAFVTFRSAAERDKALRVLHGALWKG 136
Query: 230 KTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLA 289
+ L V P++ PM + +Q ES P
Sbjct: 137 RPLSVRLARPKA------DPM--ARRRRQEGESEPPA----------------------- 165
Query: 290 GDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIM 349
DVVTPL + Y+ QLE K+ Q+L+KL + N LP W++
Sbjct: 166 --------TRVADVVTPLWTVPYAEQLERKQLECEQVLQKLAKEIGST--NRALLP-WLL 214
Query: 350 KSREIGGLPC-KLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEE 407
+ R C LEG+ SP YRNKCEF VG + + TVG LG ++ G AV
Sbjct: 215 EQRHKHNKACCPLEGVRPSPQQTEYRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAA 274
Query: 408 PVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLE 467
P D ++ E + FQEF++ + ++ +G W+QLTVR R
Sbjct: 275 PFDTVHIPEATKQVVKAFQEFIRSTPYSAYDPETYTGHWKQLTVRTSRR----------- 323
Query: 468 VNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQ 527
+ M IA + LA+ F AG +S
Sbjct: 324 --------RQAMAIAYFHPQKLSPEELAELKASLAQHFTAGPGRAS-------------- 361
Query: 528 GVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAE 587
GV+ + + R P +G P E + + IH+ + L F ISP AFFQVNT AAE
Sbjct: 362 GVTCLYFVEEGQR--KTPSQEGLPLE-HMAGDRCIHEDLLGLTFRISPHAFFQVNTPAAE 418
Query: 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEING 647
LY++ DWA L + + DVCCGTGTIGL LA +V VIG+E+ AV DA NA+ N
Sbjct: 419 VLYTVIQDWAQLDAGSTVLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDARVNAQDNE 478
Query: 648 IKNCRFVCAKAEDVMGSLL 666
+ N F C +AED++ +L+
Sbjct: 479 LSNVEFHCGRAEDLVPALV 497
>gi|402883565|ref|XP_003905284.1| PREDICTED: LOW QUALITY PROTEIN: tRNA (uracil-5-)-methyltransferase
homolog A [Papio anubis]
Length = 624
Score = 189 bits (479), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 154/500 (30%), Positives = 216/500 (43%), Gaps = 82/500 (16%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L ++PR ++++FL G+ K FV F S + A+ L G
Sbjct: 77 LQNVPRHASFSDVRRFLGRFGLQPHKTKLFGQPPCAFVTFRSAAERDKALRVLHGALWKG 136
Query: 230 KTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLA 289
+ L V P++ PM + +Q ES P
Sbjct: 137 RPLSVRLARPKA------DPM--ARRRRQEGESEPPA----------------------- 165
Query: 290 GDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIM 349
DVVTPL + Y+ QLE K+ Q+L+KL + N LP W++
Sbjct: 166 --------TRVADVVTPLWTVPYAEQLERKQLECEQVLQKLAKEIGST--NRALLP-WLL 214
Query: 350 KSREIGGLPC-KLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEE 407
+ R C LEG+ SP YRNKCEF VG + + TVG LG ++ G AV
Sbjct: 215 EQRHKHNKACCPLEGVRPSPQQTEYRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAA 274
Query: 408 PVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLE 467
P D ++ E + FQEF++ + ++ +G W+QLTVR R
Sbjct: 275 PFDTVHIPEATKQVVKAFQEFIRSTPYSAYDPETYTGHWKQLTVRTSRR----------- 323
Query: 468 VNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQ 527
+ M IA + LA+ F AG +S
Sbjct: 324 --------RQAMAIAYFHPQKLSPEELAELKASLAQHFTAGPGRAS-------------- 361
Query: 528 GVSNVAPADAPLRLLSIPKADGEPEESNDVVEAR-IHDSISNLRFCISPTAFFQVNTLAA 586
GV+ + + R P +G P E V R IH+ + L F ISP AFFQVNT AA
Sbjct: 362 GVTCLYFVEEGQR--KTPSQEGLPLE--HVAGDRCIHEDLLGLTFRISPHAFFQVNTPAA 417
Query: 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN 646
E LY++ DWA L + + DVCCGTGTIGL LA +V VIG+E+ AV DA NA+ N
Sbjct: 418 EVLYTVIQDWAQLDAGSTVLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDARVNAQDN 477
Query: 647 GIKNCRFVCAKAEDVMGSLL 666
+ N F C +AED++ +L+
Sbjct: 478 ELSNVEFHCGRAEDLVPALV 497
>gi|380811738|gb|AFE77744.1| tRNA (uracil-5-)-methyltransferase homolog A [Macaca mulatta]
gi|380811740|gb|AFE77745.1| tRNA (uracil-5-)-methyltransferase homolog A [Macaca mulatta]
gi|383417527|gb|AFH31977.1| tRNA (uracil-5-)-methyltransferase homolog A [Macaca mulatta]
gi|383417529|gb|AFH31978.1| tRNA (uracil-5-)-methyltransferase homolog A [Macaca mulatta]
gi|384946446|gb|AFI36828.1| tRNA (uracil-5-)-methyltransferase homolog A [Macaca mulatta]
gi|384946448|gb|AFI36829.1| tRNA (uracil-5-)-methyltransferase homolog A [Macaca mulatta]
Length = 624
Score = 189 bits (479), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 152/499 (30%), Positives = 216/499 (43%), Gaps = 80/499 (16%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L ++PR ++++FL G+ K FV F S + A+ L G
Sbjct: 77 LQNVPRHASFSDVRRFLGRFGLQPHKTKLFGQPPCAFVTFRSAAERDKALRVLHGALWKG 136
Query: 230 KTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLA 289
+ L V P++ PM + +Q ES P
Sbjct: 137 RPLSVRLARPKA------DPM--ARRRRQEGESEPPA----------------------- 165
Query: 290 GDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIM 349
DVVTPL + Y+ QLE K+ Q+L+KL + N LP W++
Sbjct: 166 --------TRVADVVTPLWTVPYAEQLERKQLECEQVLQKLAKEIGST--NRALLP-WLL 214
Query: 350 KSREIGGLPC-KLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEE 407
+ R C LEG+ SP YRNKCEF VG + + TVG LG ++ G AV
Sbjct: 215 EQRHKHNKACCPLEGVRPSPQQTEYRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAA 274
Query: 408 PVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLE 467
P D ++ E + FQEF++ + ++ +G W+QLTVR R
Sbjct: 275 PFDTVHIPEATKQVVKAFQEFIRSTPYSAYDPETYTGHWKQLTVRTSRR----------- 323
Query: 468 VNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQ 527
+ M IA + LA+ F AG +S
Sbjct: 324 --------RQAMAIAYFHPQKLSPEELAELKASLAQHFTAGPGRAS-------------- 361
Query: 528 GVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAE 587
GV+ + + R P +G P E + + IH+ + L F ISP AFFQVNT AAE
Sbjct: 362 GVTCLYFVEEGQR--KTPSQEGLPLE-HMAGDRCIHEDLLGLTFRISPHAFFQVNTPAAE 418
Query: 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEING 647
LY++ DWA L + + DVCCGTGTIGL LA +V VIG+E+ AV DA NA+ N
Sbjct: 419 VLYTVIQDWAQLDAGSTVLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDARVNAQDNE 478
Query: 648 IKNCRFVCAKAEDVMGSLL 666
+ N F C +AED++ +L+
Sbjct: 479 LSNVEFHCGRAEDLVPALV 497
>gi|355563469|gb|EHH20031.1| hypothetical protein EGK_02797 [Macaca mulatta]
Length = 624
Score = 188 bits (478), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 152/499 (30%), Positives = 215/499 (43%), Gaps = 80/499 (16%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L ++PR ++++FL G+ K FV F S + A+ L G
Sbjct: 77 LQNVPRHASFSDVRRFLGRFGLQPHKTKLFGQPPCAFVTFRSAAERDKALRVLHGALWKG 136
Query: 230 KTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLA 289
+ L V P++ PM + +Q ES P
Sbjct: 137 RPLSVRLARPKA------DPM--ARRRRQEGESEPPA----------------------- 165
Query: 290 GDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIM 349
DVVTPL + Y+ QLE K+ Q+L+KL + N LP W++
Sbjct: 166 --------TRVADVVTPLWTVPYAEQLERKQLECEQVLQKLAKEIGST--NRALLP-WLL 214
Query: 350 KSREIGGLPC-KLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEE 407
+ R C LEG+ SP YRNKCEF VG + + TVG LG ++ G AV
Sbjct: 215 EQRHKHNKACCPLEGVRPSPQQTEYRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAA 274
Query: 408 PVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLE 467
P D ++ E + FQEF++ + ++ +G W+QLTVR R
Sbjct: 275 PFDTVHIPEATKQVVKAFQEFIRSTPYSAYDPETYTGHWKQLTVRTSRR----------- 323
Query: 468 VNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQ 527
+ M IA + LA F AG +S
Sbjct: 324 --------RQAMAIAYFHPQKLSPEELAELKASLAHHFTAGPGRAS-------------- 361
Query: 528 GVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAE 587
GV+ + + R P +G P E + + IH+ + L F ISP AFFQVNT AAE
Sbjct: 362 GVTCLYFVEEGQR--KTPSQEGLPLE-HMAGDRCIHEDLLGLTFRISPHAFFQVNTPAAE 418
Query: 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEING 647
LY++ DWA L + + DVCCGTGTIGL LA +V VIG+E+ AV DA NA+ N
Sbjct: 419 VLYTVIQDWAQLDAGSTVLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDARVNAQDNE 478
Query: 648 IKNCRFVCAKAEDVMGSLL 666
+ N F C +AED++ +L+
Sbjct: 479 LSNVEFHCGRAEDLVPALV 497
>gi|348584682|ref|XP_003478101.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A-like [Cavia
porcellus]
Length = 619
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 152/498 (30%), Positives = 214/498 (42%), Gaps = 78/498 (15%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L +LPR ++++FL G+ K FV F S + A+ L G
Sbjct: 71 LQNLPRHASFSDVRRFLGRFGLQPHKTKLFGQPPCAFVTFRSAAERDKALRVLHGALWKG 130
Query: 230 KTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLA 289
+ L V P++ PM A HE G E L
Sbjct: 131 RPLSVRLARPKA------DPM----------------------ARKRQHE---GEVEPL- 158
Query: 290 GDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIM 349
V DVVTPL + Y+ QLE K+ Q+L++L + N LP +
Sbjct: 159 -------VAQIADVVTPLWTVPYAEQLERKRLECEQVLQRLAKEIGST--NRALLPWLLT 209
Query: 350 KSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEP 408
+ + C LEG+ SP YRNKCEF VG + K TVG LG ++ G AV P
Sbjct: 210 QRHKHNKACCPLEGVRPSPQQIEYRNKCEFLVGTGVDGKDNTVGCRLGKYKGGTCAVAAP 269
Query: 409 VDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEV 468
D ++ E + FQEF++ + ++ +G W+QLTVR R
Sbjct: 270 FDTVHIPEATKRVVKAFQEFIRSTPYSAYDPETYTGHWKQLTVRTSRR------------ 317
Query: 469 NISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQG 528
+ M IA + LA+ F G +S G
Sbjct: 318 -------GQAMAIAYFHPQKLSPEELAGLKASLAQHFMEGPGRAS--------------G 356
Query: 529 VSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEK 588
V+ + + R P +G P E + + I + + L F ISP AFFQVNT AAE
Sbjct: 357 VTCLYFVEEGQR--KTPSQEGLPLE-HVAGDQCIQEDLLGLTFRISPHAFFQVNTPAAEV 413
Query: 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI 648
LY++ DWA L + + DVCCGTGTIGL +A +V VIGIE++ AV DA NA+ N +
Sbjct: 414 LYTVIQDWAQLDEGSTVLDVCCGTGTIGLAIAQKVKRVIGIELSQEAVEDARANAQANEL 473
Query: 649 KNCRFVCAKAEDVMGSLL 666
N F C +AED++ +L+
Sbjct: 474 SNVEFHCGRAEDLVPALV 491
>gi|196010802|ref|XP_002115265.1| hypothetical protein TRIADDRAFT_59271 [Trichoplax adhaerens]
gi|190582036|gb|EDV22110.1| hypothetical protein TRIADDRAFT_59271 [Trichoplax adhaerens]
Length = 556
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 141/472 (29%), Positives = 209/472 (44%), Gaps = 101/472 (21%)
Query: 203 TVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRSFDKNIKSPMTLSGNAKQASES 262
T FV F S + + A++ ++G + K L+ K + P+ NA
Sbjct: 86 TFAFVTFGSEAERQKALKAIDGYNWKKKVLQA------KLAKPVVDPIAKKRNA------ 133
Query: 263 AVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNS 322
DG D + K + DVV PL SY QL+ KKN+
Sbjct: 134 --------------AGNDGTTGDVDSEQNKKRAKTLNILDVVIPLWDKSYDQQLKIKKNN 179
Query: 323 IAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVG 382
+ ++L+K T KLE I P +N YRNKCEF++G
Sbjct: 180 LDRILRKCTS---------------------------KLEAI-KVPEINNYRNKCEFAIG 211
Query: 383 --------YSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDL 434
S++A VGF LG++REG +V P DC NV E A A Q +QQS L
Sbjct: 212 QDSKDEVVISVRAGIAVGFRLGSYREGNLSVVPPTDCANVPEEAKAIAKAMQSLIQQSSL 271
Query: 435 PVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVV 494
PV++ ++G+WRQ+ VR NL + ++M I Q+ + +
Sbjct: 272 PVYSFVDHTGYWRQICVRR-----------NL--------LGQLMAIVQLHPQDLSEDQL 312
Query: 495 NSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEES 554
S + + + + ++ +Q S+ A + ++S K
Sbjct: 313 QSLKDEINRCL------EKCDCQVVSVYLQKQTTRSSAGNAGSVYEIISGSKY------- 359
Query: 555 NDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGT 614
+++ ++F ISP++FFQ NTLAAE LY DW T++ D+CCGTGT
Sbjct: 360 -------LYEDFLGMKFRISPSSFFQGNTLAAEVLYRNIRDWCPTKATTVVLDICCGTGT 412
Query: 615 IGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
IG+ +A V VIGIEM A+ DA NAE+N IKN F+C KAED + +L+
Sbjct: 413 IGILMAKNVNRVIGIEMVEDAIEDARVNAELNDIKNIEFICGKAEDKLPTLV 464
Score = 42.7 bits (99), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 751 VVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
V+AIVDPPR GLH VIK LR +++L+++
Sbjct: 473 VIAIVDPPRAGLHTRVIKALRRSLFIKKLIYV 504
>gi|10437555|dbj|BAB15067.1| unnamed protein product [Homo sapiens]
Length = 475
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 132/373 (35%), Positives = 182/373 (48%), Gaps = 43/373 (11%)
Query: 297 VKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSR-EIG 355
V DVVTPL + Y+ QLE K+ Q+L+KL + N LP W+++ R +
Sbjct: 15 VTRVADVVTPLWTVPYAEQLERKQLECEQVLQKLAKEIGST--NRALLP-WLLEQRHKHN 71
Query: 356 GLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNV 414
C LEG+ SP YRNKCEF VG + + TVG LG ++ G AV P D ++
Sbjct: 72 KACCPLEGVRPSPQQTEYRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAAPFDTVHI 131
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
E + FQEF++ + ++ +G W+QLTVR R
Sbjct: 132 PEATKQVVKAFQEFIRSTPYSAYDPETYTGHWKQLTVRTSRR------------------ 173
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+ M IA + LA+ F AG +S GV+ +
Sbjct: 174 -HQAMAIAYFHPQKLSPEELAELKTSLAQHFTAGPGRAS--------------GVTCLYF 218
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEAR-IHDSISNLRFCISPTAFFQVNTLAAEKLYSLG 593
+ R P +G P E V R IH+ + L F ISP AFFQVNT AAE LY++
Sbjct: 219 VEEGQR--KTPSQEGLPLE--HVAGDRCIHEDLLGLTFRISPHAFFQVNTPAAEVLYTVI 274
Query: 594 GDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRF 653
DWA L +++ DVCCGTGTIGL LA +V VIG+E+ AV DA NA+ N + N F
Sbjct: 275 QDWAQLDAGSMVLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDARVNAQDNELSNVEF 334
Query: 654 VCAKAEDVMGSLL 666
C +AED++ +L+
Sbjct: 335 HCGRAEDLVPTLV 347
>gi|431904427|gb|ELK09812.1| tRNA (uracil-5-)-methyltransferase like protein A [Pteropus alecto]
Length = 680
Score = 186 bits (472), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 148/498 (29%), Positives = 213/498 (42%), Gaps = 78/498 (15%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L ++PR ++++FL G+ K FV F S + A+ L G
Sbjct: 129 LQNVPRHASFSDVRRFLGRFGLQPHKTKLFGQPPCAFVTFRSAAERDKALRVLHGALWKG 188
Query: 230 KTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLA 289
+ L V P+ PM + ++ ES P
Sbjct: 189 RPLSVRLARPKV------DPM--AKKRRREDESEPPA----------------------- 217
Query: 290 GDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIM 349
DVVTPL + Y+ QLE K+ Q+L+KL + N LP +
Sbjct: 218 --------TCVNDVVTPLWTVPYAEQLERKRLECEQVLQKLAKEIGNT--NRALLPWLLS 267
Query: 350 KSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEP 408
+ + C L+G+ SP YRNKCEF VG + K TVG LG ++ G AV P
Sbjct: 268 QKHKHNKACCPLDGVRPSPQQTEYRNKCEFLVGVGVDGKDNTVGCRLGKYKGGTCAVAAP 327
Query: 409 VDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEV 468
D ++ + + FQEF++ + ++ SG W+QLTVR R
Sbjct: 328 FDTVHIPKATKQVVKTFQEFIRSTPYSAYDPETYSGHWKQLTVRTSRR------------ 375
Query: 469 NISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQG 528
+ M IA + LA+ F AG +S G
Sbjct: 376 -------GQAMAIAYFHPQKLSPEELTELKASLAQYFIAGPGKAS--------------G 414
Query: 529 VSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEK 588
V+ + R P +G P E + + IH+ + L F ISP AFFQVN+ AAE+
Sbjct: 415 VTCLYFVKEGQR--KAPSQEGLPLE-HVAGDRYIHEDLLGLTFQISPHAFFQVNSPAAEE 471
Query: 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI 648
LY++ DWA L ++ + DVCCGTGTIGL LA +V V+GIE+ AV DA NA N +
Sbjct: 472 LYTVIQDWAQLDSESTVLDVCCGTGTIGLALARKVKRVVGIELCQEAVEDARVNACNNEL 531
Query: 649 KNCRFVCAKAEDVMGSLL 666
N F C +AED++ +L+
Sbjct: 532 SNVEFHCGRAEDLVPALV 549
>gi|345791537|ref|XP_534759.3| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A [Canis
lupus familiaris]
Length = 683
Score = 186 bits (471), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 155/500 (31%), Positives = 215/500 (43%), Gaps = 82/500 (16%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L ++PR ++++FL G+ K FV F S + A+ L G
Sbjct: 134 LQNVPRHASFSDVRRFLGRFGLQPHKTKLFGQPPCAFVTFRSAAERDKALRVLHGALWKG 193
Query: 230 KTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLA 289
+ L V P++ PM A ED
Sbjct: 194 RPLSVRPARPKA------DPM----------------------ARKRRRED--------E 217
Query: 290 GDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIM 349
G+ + + DVVTPL + Y+ QLE K+ Q+L+KL + N LP W++
Sbjct: 218 GEPTATCIA---DVVTPLWTVPYAEQLERKRLECEQVLQKLAKEI--GSTNRALLP-WLL 271
Query: 350 KSR-EIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEE 407
R + C LEG+ SP YRNKCEF VG + + TVG LG ++ G AV
Sbjct: 272 SQRHKHNKACCPLEGVRPSPQQTEYRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAA 331
Query: 408 PVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLE 467
P D ++ + FQEF++ + +N SG W+QLTVR R
Sbjct: 332 PFDTVHIPGATKQVVKAFQEFIRSTPYSAYNPETYSGHWKQLTVRTSRR----------- 380
Query: 468 VNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQ 527
+ M I + LA+ F AG ++
Sbjct: 381 --------GQAMAIVYFHPQKLGPEELAGLKASLAQHFMAGPGKAT-------------- 418
Query: 528 GVSNVAPADAPLRLLSIPKADGEPEESNDVVEAR-IHDSISNLRFCISPTAFFQVNTLAA 586
GV+ + + R P +G P E V R IH+ + L F ISP AFFQVNTLAA
Sbjct: 419 GVTCLYFVEEGQR--KTPSQEGLPLE--HVAGDRCIHEDLLGLTFRISPHAFFQVNTLAA 474
Query: 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN 646
E LY++ DWA L + + DVCCGTGTIGL LA RV V+GIE+ AV DA NA N
Sbjct: 475 EVLYTVIQDWAQLDTGSTVLDVCCGTGTIGLALAPRVKRVVGIELCQEAVEDARVNARDN 534
Query: 647 GIKNCRFVCAKAEDVMGSLL 666
+ N F C +AED++ +L+
Sbjct: 535 ELSNVEFHCGRAEDLVPALV 554
>gi|301770471|ref|XP_002920643.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A-like
[Ailuropoda melanoleuca]
Length = 621
Score = 186 bits (471), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 156/501 (31%), Positives = 214/501 (42%), Gaps = 84/501 (16%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L ++PR ++++FL G+ K FV F S + A+ L G
Sbjct: 73 LQNVPRHASFSDVRRFLGRFGLQPHKTKLFGQPPCAFVTFRSAAERDKALRVLHGALWKG 132
Query: 230 KTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHED-GNGNDEGL 288
+ L V P++ PM A ED G +
Sbjct: 133 RPLSVRLARPKA------DPM----------------------ARKRRREDEGEPTTTCI 164
Query: 289 AGDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWI 348
A DVVTPL + Y+ QLE K+ Q+L+KL + N LP W+
Sbjct: 165 A------------DVVTPLWTVPYAEQLERKRLECEQVLQKLAKEIGST--NRALLP-WL 209
Query: 349 MKSR-EIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVE 406
+ R + C LEG+ SP YRNKCEF VG + + TVG LG ++ G AV
Sbjct: 210 LSQRHKHNKACCPLEGVRPSPQQTEYRNKCEFLVGIGVDGEDNTVGCRLGKYKGGTCAVA 269
Query: 407 EPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENL 466
P D ++ + FQEF++ + +N SG W+QLTVR R
Sbjct: 270 APFDTVHIPGATKQVVKAFQEFIRSTPYSAYNPETYSGHWKQLTVRTSRR---------- 319
Query: 467 EVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDH 526
+ M I + LA+ F AG ++
Sbjct: 320 ---------GQAMAIVYFHPQKLGPEELAGLKASLAQHFMAGPGKAT------------- 357
Query: 527 QGVSNVAPADAPLRLLSIPKADGEPEESNDVVEAR-IHDSISNLRFCISPTAFFQVNTLA 585
GV+ + + R P +G P E V R IH+ + L F ISP AFFQVNTLA
Sbjct: 358 -GVTCLYFVEEGQR--KTPSQEGLPLE--HVAGDRCIHEDLLGLTFRISPHAFFQVNTLA 412
Query: 586 AEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEI 645
AE LY++ DWA L + + DVCCGTGTIGL LA RV V+GIE+ AV DA NA
Sbjct: 413 AEVLYTVIQDWAQLDTGSTVLDVCCGTGTIGLALAPRVKRVVGIELCQEAVEDARVNARD 472
Query: 646 NGIKNCRFVCAKAEDVMGSLL 666
N + N F C +AED++ +L+
Sbjct: 473 NELTNVEFHCGRAEDLVPTLV 493
>gi|242002062|ref|XP_002435674.1| tRNA uracil-5-methyltransferase, putative [Ixodes scapularis]
gi|215499010|gb|EEC08504.1| tRNA uracil-5-methyltransferase, putative [Ixodes scapularis]
Length = 494
Score = 185 bits (470), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 130/389 (33%), Positives = 185/389 (47%), Gaps = 53/389 (13%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L+V ++ V Y QL+ K++ + ++L K R P +L W+ + RE
Sbjct: 67 LRVARIKESVAAWWDTPYEQQLQQKQDLVRKVLVKYARKLEATNP---ALRPWLKQQREA 123
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSL-QAKPTVGFMLGNFREGVTAVEEPVDCPN 413
G C + I SP+ GYRNK EFSVG L + TVGF L ++R+G +V P PN
Sbjct: 124 HGGCCPVLPIRASPVTEGYRNKNEFSVGRHLATGEATVGFRLSSYRQGSMSVAPPDALPN 183
Query: 414 VSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVR---EGRSPGKPLDVENLEVNI 470
V A FQE+++QS ++ + G+WRQLTVR EG
Sbjct: 184 VPASAKAVTRCFQEYVRQSGKEPFDPESHGGYWRQLTVRTSCEG---------------- 227
Query: 471 SEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVS 530
VM I + +A + E +L + F +G GV+
Sbjct: 228 ------HVMAIVVIHPQGLTEAEITEEKRKLREFFESGPGQVC--------------GVT 267
Query: 531 NVAPADAPLRLLSIPKADGEPEESNDVV-EARIHDSISNLRFCISPTAFFQVNTLAAEKL 589
++ L+ + +GE E + + + + L F + P AFFQVNT AAE L
Sbjct: 268 SLY-----LQRFDKKRPEGEQAEFEHLFGTTELEERVRGLSFRVGPDAFFQVNTPAAEVL 322
Query: 590 YSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIK 649
+ D A LGP T L DVCCGTGTIGL +A +V V G+E+ AV +A RNAE NGI
Sbjct: 323 LEVAEDLAALGPRTTLLDVCCGTGTIGLCMAAKVARVYGVEVCKRAVENAKRNAEANGIG 382
Query: 650 NCRFVCAKAEDVMGSLLKDYLNPLREEDE 678
N FV +AED M D ++ LR+ ++
Sbjct: 383 NASFVLGRAEDTM----HDVMHTLRDSED 407
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 749 KNVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
+++VA+VDPPR GLH V++ LR A ++RL++I
Sbjct: 406 EDMVAVVDPPRQGLHNKVLRALRATASIKRLVYI 439
>gi|432094832|gb|ELK26240.1| tRNA (uracil-5-)-methyltransferase like protein A [Myotis davidii]
Length = 632
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 149/498 (29%), Positives = 209/498 (41%), Gaps = 78/498 (15%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L ++PR ++++FL G+ K FV F + A+ L G
Sbjct: 84 LQNVPRHASFSDVRRFLGRFGLQPHKTKLFGQPPCAFVTFRCAAERDKALRVLHGALWKG 143
Query: 230 KTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLA 289
+ L V P++ PM +Q E P A
Sbjct: 144 RPLSVRLARPKA------DPM---ARKRQREEEGEPPATCVA------------------ 176
Query: 290 GDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIM 349
DVVTPL + Y QL+ K+ Q+L+KL + N LP I
Sbjct: 177 ------------DVVTPLWTVPYDEQLDRKRLECEQVLQKLAKEIGNT--NRALLPWLIS 222
Query: 350 KSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEP 408
+ + C LEG+ SP YRNKCEF VG + + TVG LG ++ G AV P
Sbjct: 223 QRHKHNKACCPLEGVRPSPQQTEYRNKCEFLVGIGVDGEDNTVGCRLGKYKGGTCAVAAP 282
Query: 409 VDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEV 468
D ++ E + FQEF++ + ++ SG W+QLTVR R
Sbjct: 283 FDTVHIPEATKQVVKAFQEFIRSTPYSAYDPETYSGHWKQLTVRTSRR------------ 330
Query: 469 NISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQG 528
+ M IA + L + F AG +S G
Sbjct: 331 -------GQAMAIAYFHPQKLSPEELAGLKAALVQHFTAGPGKAS--------------G 369
Query: 529 VSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEK 588
V+ + R P +G P E + + IH+ + L F ISP AFFQVNT AAE
Sbjct: 370 VTCLYFVKEGQR--KTPSQEGLPLE-HIAGDQYIHEDLLGLTFQISPHAFFQVNTPAAEV 426
Query: 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI 648
LY++ DWA L ++ + DVCCGTGTIGL LA +V V+GIE+ AV DA NA N +
Sbjct: 427 LYTVIQDWAQLDMESTVLDVCCGTGTIGLALARKVKRVVGIELCQEAVEDARVNANNNEL 486
Query: 649 KNCRFVCAKAEDVMGSLL 666
N F C +AED++ +L+
Sbjct: 487 SNVEFHCGRAEDLVPALV 504
>gi|338728838|ref|XP_001488208.2| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A [Equus
caballus]
Length = 637
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 153/500 (30%), Positives = 212/500 (42%), Gaps = 82/500 (16%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L ++PR ++++FL G+ K FV F S + A+ L G
Sbjct: 89 LQNVPRHASFSDVRRFLGRFGLQPHKTKLFGQPPCAFVTFRSAAERDKALRVLHGALWKG 148
Query: 230 KTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLA 289
+ L V P++ PM + + SE P
Sbjct: 149 RPLSVRLARPKA------DPM--ARKRRLESEGEPPATCVA------------------- 181
Query: 290 GDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIM 349
DVVTPL + Y+ QLE K+ Q+L+KL + N LP W+
Sbjct: 182 ------------DVVTPLWAVPYAEQLERKRLECEQVLQKLAKEI--GSTNRALLP-WLF 226
Query: 350 KSR-EIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEE 407
R + C LEG+ SP YRNKCEF +G + + TVG LG ++ G AV
Sbjct: 227 SQRHKHNKACCPLEGVRPSPQQTEYRNKCEFLIGVGVDGEDNTVGCRLGKYKGGTCAVAA 286
Query: 408 PVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLE 467
P D ++ E + FQEF++ + ++ SG W+QLTVR R
Sbjct: 287 PFDTVHIPEATKRVVKAFQEFIRSTPYSAYDPETYSGHWKQLTVRTSRR----------- 335
Query: 468 VNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQ 527
+ M IA + LA F AG +S
Sbjct: 336 --------GQAMAIAYFHPQKLSPEELAGLKASLAHHFMAGPGKAS-------------- 373
Query: 528 GVSNVAPADAPLRLLSIPKADGEPEESNDVVEAR-IHDSISNLRFCISPTAFFQVNTLAA 586
GV+ + + R P +G P E V R IH+ + L F ISP AFFQVNT AA
Sbjct: 374 GVTCLYFVEEGQR--KTPSQEGLPLE--HVAGDRCIHEDLLGLTFRISPHAFFQVNTPAA 429
Query: 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN 646
E LY++ DWA L + + DVCCGTGTIGL LA +V V+GIE+ AV DA NA N
Sbjct: 430 EVLYTVIQDWAQLDTGSTVLDVCCGTGTIGLALARKVKRVVGIELCQEAVEDARVNARDN 489
Query: 647 GIKNCRFVCAKAEDVMGSLL 666
+ N F C +AED++ +L+
Sbjct: 490 ELSNVEFHCGRAEDLVPTLV 509
>gi|125977774|ref|XP_001352920.1| GA17699 [Drosophila pseudoobscura pseudoobscura]
gi|54641671|gb|EAL30421.1| GA17699 [Drosophila pseudoobscura pseudoobscura]
Length = 631
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 121/385 (31%), Positives = 178/385 (46%), Gaps = 50/385 (12%)
Query: 289 AGDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWI 348
A DG + ++A + PLA ++Y QL+ K ++ +LKK T+ RK P +
Sbjct: 142 ATDGKPKRQRTAVEATCPLAGITYDDQLKQKSEEMSTLLKKYTQELRKINPQAKPHLDSF 201
Query: 349 MKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEP 408
K +L SP VNGYRNK EF+VG + + + VGF LG++ +G V E
Sbjct: 202 -----------KFNEVLPSPTVNGYRNKNEFTVGKNSEGEVVVGFRLGSYSDGSVEVAEV 250
Query: 409 VDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEV 468
D P++ + A A FQ+ ++QS +N N G +RQL VR + G
Sbjct: 251 QDLPHLPDQAKWAAQSFQKLVRQSKFQPFNPDGNVGHFRQLMVRCSSATG---------- 300
Query: 469 NISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQD--- 525
E+ML+A + S+ + + L + + + T+L QD
Sbjct: 301 --------ELMLVAGIYSSNLSEDEQQELKQELKSFYEHASEQDDATFKCTSLYYQDVKH 352
Query: 526 HQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLA 585
+ V P D L I D+I L+F ISP AFFQ+NT
Sbjct: 353 REAGQMVNPVDHILGT------------------THITDTIQGLQFRISPLAFFQINTEG 394
Query: 586 AEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEI 645
A LY D DT + D+CCGTGTI L A V+G+E+ A+ DA NAE
Sbjct: 395 ANVLYQQAIDLVAPTKDTTMLDICCGTGTIALAFAKHCKRVLGVEIVPDAIKDAQFNAEA 454
Query: 646 NGIKNCRFVCAKAEDVMGSLLKDYL 670
NGIKNC+F A+D + S++++ +
Sbjct: 455 NGIKNCKFFTGNADDFIKSMVREAM 479
>gi|307169861|gb|EFN62370.1| HpaII tiny fragments locus 9c protein [Camponotus floridanus]
Length = 583
Score = 182 bits (461), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 121/375 (32%), Positives = 184/375 (49%), Gaps = 56/375 (14%)
Query: 303 VVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI-GGLPCKL 361
+ TPL +M YS QLE K+ + +L K+ ++ S+ +WI +++ GLPCKL
Sbjct: 146 ITTPLWNMPYSSQLEFKQKEMKSILMKI---GQQIIRESKSMTDWINSQKKLYDGLPCKL 202
Query: 362 EGILGSPLVNGYRNKCEFSVGY-SLQAKPTVGFMLGNFREGVTAVEEPVD----CPNVSE 416
+ IL + ++ YRNKCEF++G S Q K T+GF L ++ G TAV P+D P +
Sbjct: 203 QNILSADIIEAYRNKCEFTIGKDSEQNKITIGFRLSSYASGSTAV-APIDNLCHIPKSMK 261
Query: 417 IACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNIS 476
A K + + F+ +S+L +N +SG+WRQ+T R R+ +
Sbjct: 262 TAVK---VLETFVNESNLEPFNPVCHSGYWRQVTARTTRA-------------------N 299
Query: 477 EVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPAD 536
+MLI + + ++ +L F G + + +T+L Q
Sbjct: 300 HLMLIVGIHPQDLSNEELDKLKSQLRIFFEEGGKGADAN--VTSLYFQ------------ 345
Query: 537 APLRLLSIPKADGEPEESNDVVEAR----IHDSISNLRFCISPTAFFQVNTLAAEKLYSL 592
+I K + E S + I +++ L+F +SP AFFQVN+ AE LY
Sbjct: 346 ------TIDKKNAGSESSGTLYHVNGTEYIEETLLGLKFRVSPQAFFQVNSSGAEVLYKA 399
Query: 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCR 652
D A D L DVCCGTGTIGL + G V+GIE+ A+ DA N NGI NC
Sbjct: 400 AIDLARPTKDMALLDVCCGTGTIGLCFSKHCGEVLGIEIIPDAIKDAKENVIKNGITNCE 459
Query: 653 FVCAKAEDVMGSLLK 667
F KAED++ +++
Sbjct: 460 FFVGKAEDILSPVIQ 474
>gi|193669328|ref|XP_001944973.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A-like
[Acyrthosiphon pisum]
Length = 650
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 126/379 (33%), Positives = 188/379 (49%), Gaps = 52/379 (13%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARK-ACPNGVSLPEWIMKSR-EIGGLPCKL 361
VTPL ++SY QL K NSI +L +R ++ C G+ W+ K + E GLPCKL
Sbjct: 224 VTPLYNISYDEQLIQKTNSIKNVLMDYSRRLKRIKCGQGIL--NWLKKQQDENNGLPCKL 281
Query: 362 EGILG----SPLVNGYRNKCEFSVGYSLQAK-PTVGFMLGNFREGVTAVEEPVDCPNVSE 416
I S GYRNKCEF++G ++ K P VGF +G + +G T+V P+D N+S
Sbjct: 282 LEIQSLKDDSEKCIGYRNKCEFTIGMDVENKEPVVGFRVGAYNQGKTSVA-PID--NISN 338
Query: 417 IACKYASI---FQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEV 473
+ + + FQ+ ++ S PV++ +G WRQLTVR +
Sbjct: 339 VPQRMKDVVKCFQDLVRASKFPVFDPENYTGHWRQLTVRLS------------------L 380
Query: 474 NISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVA 533
++MLI V + +++ +NS + + F GA A + +L Q + +
Sbjct: 381 KTEQLMLICVVHTENMEESALNSLKQLILSYFTEGAGAVCK---VDSLYFQKAKKRAAGE 437
Query: 534 PADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLG 593
PL LL + I + + L+ ISP +FFQ+NT A+E L+
Sbjct: 438 GNSFPLELLH--------------GQGYIVEEVKGLKLRISPESFFQINTAASEILFDAA 483
Query: 594 GDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRF 653
D A + T + DVCCG+GTIGL++A VIG+E+ AV+ A NA NGI N F
Sbjct: 484 KDLASINSQTTVLDVCCGSGTIGLSIAKDCAQVIGVEIQEEAVNMAKLNATENGITNAIF 543
Query: 654 VCAKAEDVMGSLLKDYLNP 672
KAE+VM +++ NP
Sbjct: 544 FAGKAEEVMNK--REFQNP 560
>gi|311271117|ref|XP_001927820.2| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A [Sus
scrofa]
Length = 621
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 148/499 (29%), Positives = 212/499 (42%), Gaps = 77/499 (15%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L ++PR ++++FL G+ K FV F S + A+ L G
Sbjct: 70 LQNVPRHASFSDVRRFLGRFGLQPHKTKLFGQPPCAFVTFRSAAERDKALCVLHGALWKG 129
Query: 230 KTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLA 289
+ L V P+ A+ A ED
Sbjct: 130 RPLSVRLARPK----------------------------ADPMARKRQRED--------E 153
Query: 290 GDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIM 349
G+ + DVVTPL + Y+ QLE K+ Q+L+KL + N LP W++
Sbjct: 154 GEPPASQATCIADVVTPLWTVPYAEQLERKRLECEQVLQKLAKEIGNT--NRALLP-WLL 210
Query: 350 KSREIGGLPC-KLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEE 407
R+ C LEG+ SP YRNKCEF VG + + TVG LG ++ G AV
Sbjct: 211 SQRQKHNKACCMLEGVKPSPQQTEYRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAA 270
Query: 408 PVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLE 467
P D ++ + FQEF++ + ++ SG W+QLTVR R
Sbjct: 271 PFDTVHIPTATKQVVKAFQEFIRSTPYSAYDPETYSGHWKQLTVRTSRR----------- 319
Query: 468 VNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQ 527
+ M IA + LA+ F G +S
Sbjct: 320 --------GQAMAIAYFHPQKLSPEELAGLKASLAQHFTTGPGKAS-------------- 357
Query: 528 GVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAE 587
GV+ + + R P +G P E + + I++ + L F ISP AFFQVNT AAE
Sbjct: 358 GVTCLYFVEEGQR--KTPSQEGLPLE-HVAGDQCIYEDLLGLTFRISPHAFFQVNTPAAE 414
Query: 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEING 647
LY++ DWA L + + DVCCGTGTIGL LA +V V+G+E++ AV DA NA N
Sbjct: 415 VLYTVIQDWAQLDTGSTVLDVCCGTGTIGLALARKVKRVVGVELSQEAVDDARVNALDNE 474
Query: 648 IKNCRFVCAKAEDVMGSLL 666
+ N F C +AED++ L+
Sbjct: 475 LSNVEFHCGRAEDLVPPLV 493
>gi|321474913|gb|EFX85877.1| hypothetical protein DAPPUDRAFT_208793 [Daphnia pulex]
Length = 530
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 150/503 (29%), Positives = 228/503 (45%), Gaps = 84/503 (16%)
Query: 171 VHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNK 230
++LP+ + + +LKKFL I K KG F F + E+ A+E+L+GI
Sbjct: 1 MNLPKYYGAGHLKKFLQRQDINTNKMKLMKGYV--FASFRNEEERDKAMEKLKGIVYKGN 58
Query: 231 TLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAG 290
TL D + PM + + A+A A +G + L
Sbjct: 59 TL----------DVKLAKPM---------QDPLIKKRKADAEAEVDGEKKARKE---LKT 96
Query: 291 DGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMK 350
+ + + + V P A YS QL KK + +LKKLT+ R A +I
Sbjct: 97 ETLTITEQITKKTV-PYAGKPYSEQLSLKKQDMLTVLKKLTKEVRNAHQKA---GHFIQS 152
Query: 351 SREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQA-KPTVGFMLGNFREGVTAVEEPV 409
+ G C+ ++ SP+ YRNKCEF+VG + + + T+GF + ++EG AV
Sbjct: 153 KKVAHGAICEFTEMIPSPVSEKYRNKCEFTVGVNPETDEITLGFRISTYKEGSYAVGPVS 212
Query: 410 DCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVN 469
+S+ + +F+E+ + S +N +SGFWRQ+ VR N
Sbjct: 213 HLAFISDAMREAVRVFEEYFRASGRKPYNPEDHSGFWRQVLVR---------------TN 257
Query: 470 ISEVNISEVMLIAQV-----SSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQ 524
++ EV+ + QV S D V SE +++A+A ++
Sbjct: 258 LA----GEVLAVVQVHPQNLSPEELDS--VKSELKKVAEA--------------NKIISL 297
Query: 525 DHQGVSNVAPADAPLRLLSIPKADGEPEESNDVV-EARIHDSISNLRFCISPTAFFQVNT 583
+ V PK GE ++ + + + L F ISP AFFQVNT
Sbjct: 298 YFEAVG--------------PKKSGEDSPPEHIMGSTHLVEKLCGLEFSISPLAFFQVNT 343
Query: 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNA 643
LAAE L++ + A++ +T + DVCCGTGTIGL+LA + V G+E+ SAV DA NA
Sbjct: 344 LAAEVLFNKIAEIAEIDSNTNILDVCCGTGTIGLSLAKKCRRVYGVELVESAVEDARSNA 403
Query: 644 EINGIKNCRFVCAKAEDVMGSLL 666
NGI NC FV KAED + +L+
Sbjct: 404 SKNGITNCVFVAGKAEDEVNNLI 426
Score = 43.1 bits (100), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 25/32 (78%)
Query: 751 VVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
+VAI+DPPR GLH ++LR+ R++RL++I
Sbjct: 443 IVAILDPPRAGLHKKCCQLLRSAERIERLIYI 474
>gi|296191372|ref|XP_002743598.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A [Callithrix
jacchus]
Length = 621
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 152/500 (30%), Positives = 220/500 (44%), Gaps = 83/500 (16%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L ++PR ++++FLA G+ K FV F S + A+ L G
Sbjct: 74 LQNVPRHASFSDVRRFLARFGLQPHKTKLFGQPPCAFVTFRSAAERDKALRILHGALWKG 133
Query: 230 KTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLA 289
+ L V P++ PM + +Q ES +
Sbjct: 134 RPLSVRLARPKA------DPM--ARRRRQEGESEL------------------------- 160
Query: 290 GDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIM 349
L + A DVVTPL + Y+ QLE K+ Q+L+KL + N LP W++
Sbjct: 161 -----LATRVA-DVVTPLWTVPYAEQLERKRLECEQVLQKLAKEIGST--NRALLP-WLV 211
Query: 350 KSREIGGLPC-KLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEE 407
+ R C LEG+ SP YRNKCEF VG + + TVG LG ++ G AV
Sbjct: 212 EQRHRHNKACCPLEGVRPSPQQTEYRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAA 271
Query: 408 PVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLE 467
P D ++ E + FQE+++ + ++ +G W+QLTVR R
Sbjct: 272 PFDTVHIPEATKQVVKAFQEYIRSTPYSAYDPETYTGHWKQLTVRTSRR----------- 320
Query: 468 VNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQ 527
+ M IA + + LA+ F +G +S
Sbjct: 321 --------RQAMAIAYFHPQKLNPEELAELKASLAQHFMSGPGRAS-------------- 358
Query: 528 GVSNVAPADAPLRLLSIPKADGEPEESNDVVEAR-IHDSISNLRFCISPTAFFQVNTLAA 586
GV+ + + R P +G P E V R IH+ + L F ISP AFFQV TLAA
Sbjct: 359 GVTCLYFVEEGQR--KTPSQEGLPLE--HVAGDRCIHEDLLGLTFRISPHAFFQV-TLAA 413
Query: 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN 646
E LY++ DW+ L D+ + DVCCGTGTI L L +V VIG+E+ AV DA NA+ N
Sbjct: 414 EVLYTIIQDWSQLDADSTVLDVCCGTGTIALLLFQKVKRVIGVELCPEAVEDARVNAQDN 473
Query: 647 GIKNCRFVCAKAEDVMGSLL 666
+ N F C +AED++ +L+
Sbjct: 474 ELSNVEFHCGRAEDLVPALV 493
>gi|58865360|ref|NP_001011895.1| tRNA (uracil-5-)-methyltransferase homolog A [Rattus norvegicus]
gi|53733829|gb|AAH83619.1| TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae) [Rattus
norvegicus]
gi|149019780|gb|EDL77928.1| rCG36750, isoform CRA_a [Rattus norvegicus]
Length = 615
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 147/498 (29%), Positives = 214/498 (42%), Gaps = 78/498 (15%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L ++PR ++++FL G+ K FV F S + A+ L G+
Sbjct: 68 LQNVPRHASFSDVRRFLGRFGLQSHKIKLFGQPPCAFVTFRSAAERDKALRVLHGVLWKG 127
Query: 230 KTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLA 289
+ L V P++ PM K+ E G++E A
Sbjct: 128 RPLSVRLARPKA------DPMA----RKRRQE---------------------GDNEPTA 156
Query: 290 GDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIM 349
DVVTPL + Y+ QLE K+ ++L+KL + N LP ++
Sbjct: 157 --------TQIADVVTPLWTVPYTEQLEQKRLECERVLQKLAKEIGNT--NHALLPWLLL 206
Query: 350 KSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEP 408
+ ++ C LEG+ SP YRNKCEF VG + + TVG LG ++ G AV P
Sbjct: 207 QRQQHNKACCPLEGVKPSPQQTEYRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAPP 266
Query: 409 VDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEV 468
D ++ + + FQEF++ + ++ +G W+QLTVR R
Sbjct: 267 FDTVHIPQATKQLVKAFQEFIRSTPYSAYDPETYTGHWKQLTVRTSRR------------ 314
Query: 469 NISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQG 528
+ M IA V L F G +S G
Sbjct: 315 -------GQAMAIAHFHPQKLSSEEVAGLKASLVCHFMEGPGKAS--------------G 353
Query: 529 VSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEK 588
V+++ + R P +G P E + + I + + L F ISP AFFQVNT AAE
Sbjct: 354 VTSLYFVEEGQR--KTPSQEGLPLE-HMAGDQCIQEDLLGLTFRISPHAFFQVNTPAAEV 410
Query: 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI 648
LY++ +WA L + + DVCCGTGTIGL LA +V VIGIE+ AV DA NA N +
Sbjct: 411 LYTVIQEWAQLDGGSTVLDVCCGTGTIGLALAPKVKKVIGIELCQEAVEDARMNALTNEL 470
Query: 649 KNCRFVCAKAEDVMGSLL 666
N F C +AED++ L+
Sbjct: 471 SNVEFHCGRAEDLVPGLV 488
>gi|297708304|ref|XP_002830909.1| PREDICTED: LOW QUALITY PROTEIN: tRNA (uracil-5-)-methyltransferase
homolog A [Pongo abelii]
Length = 625
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 151/500 (30%), Positives = 213/500 (42%), Gaps = 82/500 (16%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L ++PR ++++FL G+ K FV F S + A+ L G
Sbjct: 77 LQNVPRHASFSDVRRFLGRFGLQPHKTKLFGQPPCAFVTFRSAAERDKALRVLHGALWKG 136
Query: 230 KTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLA 289
+ L V P++ PM + +Q ES P
Sbjct: 137 RPLSVRLARPKA------DPM--ARRRRQEGESEPP------------------------ 164
Query: 290 GDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIM 349
V DVVTPL + Y+ QLE K+ Q+L+KL + N LP W++
Sbjct: 165 -------VTRVADVVTPLWTVPYAEQLERKQLECEQVLQKLAKEIGST--NRALLP-WLL 214
Query: 350 KSREIGGLPC-KLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEE 407
+ R C LEG+ SP YRNKCEF VG + + TVG LG ++ G AV
Sbjct: 215 EQRHKHNKACCPLEGVRPSPQQTEYRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAA 274
Query: 408 PVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLE 467
P D ++ E + FQEF++ + ++ +G W+QLTVR R
Sbjct: 275 PFDTVHIPEATKQVVKAFQEFIRSTPYSAYDPETYTGHWKQLTVRTSRR----------- 323
Query: 468 VNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQ 527
+ M IA + LA+ F AG +S
Sbjct: 324 --------RQAMAIAYFHPQKLSPEELAELKASLAQHFTAGPGRAS-------------- 361
Query: 528 GVSNVAPADAPLRLLSIPKADGEPEESNDVVEAR-IHDSISNLRFCISPTAFFQVNTLAA 586
GV+ + + R P +G P E V R IH+ + L F ISP AFFQVNT AA
Sbjct: 362 GVTCLYFVEEGQR--KTPSQEGLPLE--HVAGDRCIHEDLLGLTFRISPHAFFQVNTPAA 417
Query: 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN 646
E LY++ DWA + + DVCCG IGL LA +V VIG+E+ AV DA NA+ N
Sbjct: 418 EVLYTVIQDWAQRDAGSTVLDVCCGFRAIGLALARKVKRVIGVELCPEAVEDARVNAQDN 477
Query: 647 GIKNCRFVCAKAEDVMGSLL 666
+ N F C +AED++ +L+
Sbjct: 478 ELSNVEFHCGRAEDLVPALV 497
>gi|322788773|gb|EFZ14341.1| hypothetical protein SINV_01191 [Solenopsis invicta]
Length = 559
Score = 179 bits (455), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 126/366 (34%), Positives = 178/366 (48%), Gaps = 62/366 (16%)
Query: 303 VVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI-GGLPCKL 361
+ TPL +M Y QLE K+ + +L K+ + + + SL EWI +++ GLPCKL
Sbjct: 146 ITTPLWNMPYLDQLEFKQKEMRSILIKIGQ--KMLTESKYSLTEWINSQKKLYDGLPCKL 203
Query: 362 EGILGSPLVNGYRNKCEFSVGY-SLQAKPTVGFMLGNFREGVTAVEEPVD----CPNVSE 416
+ IL + YRNKCEF+VG S Q+K +GF L + G TAV P+D P +
Sbjct: 204 QNILSVDVTEAYRNKCEFTVGKDSEQSKIIIGFRLSTYASGSTAVG-PIDDLCHIPENMK 262
Query: 417 IACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNIS 476
IA K I + F+ +S+L +N +SG+WRQ+T R R+ +
Sbjct: 263 IAVK---ILETFICESNLEPFNPVDHSGYWRQVTARVTRA-------------------N 300
Query: 477 EVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPAD 536
+MLI + + + L F G A + +T+L Q
Sbjct: 301 HLMLIIGIHPQDLNTVELEKLKSELRTFFETGEGAQAH---VTSLYFQ------------ 345
Query: 537 APLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDW 596
+I K E I +++ ++F ISP AFFQVNTL AE LY D
Sbjct: 346 ------TIDKNGTE----------YIEETLLGMKFRISPQAFFQVNTLGAEVLYKAAIDL 389
Query: 597 ADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCA 656
A+ DT L DVCCGTGTIGL + G V+G+++ A+ DA NA N IKNC F
Sbjct: 390 AEPTLDTALLDVCCGTGTIGLCFSKHCGEVLGVDIIPDAIKDAKENAIKNNIKNCEFFVG 449
Query: 657 KAEDVM 662
KAED++
Sbjct: 450 KAEDIL 455
Score = 42.7 bits (99), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 750 NVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
N++AIVDPPR GLH + LR +L RL++I
Sbjct: 466 NIIAIVDPPRAGLHQKALLTLRKSKKLDRLVYI 498
>gi|410977194|ref|XP_004001634.1| PREDICTED: LOW QUALITY PROTEIN: tRNA (uracil-5-)-methyltransferase
homolog A [Felis catus]
Length = 583
Score = 179 bits (455), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 130/368 (35%), Positives = 177/368 (48%), Gaps = 43/368 (11%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSR-EIGGLPCK 360
DVVTPL + Y+ QLE K+ Q+L+KL + N LP W++ R + C
Sbjct: 166 DVVTPLWTVPYAEQLERKRLECEQVLQKLAKEIGST--NRALLP-WLLSQRHKHNKACCP 222
Query: 361 LEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIAC 419
LEG+ SP YRNKCEF VG + + TVG LG ++ G AV P D ++
Sbjct: 223 LEGVRPSPQQTEYRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAAPFDTVHIPGATK 282
Query: 420 KYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVM 479
+ FQEF++ + +N SG W+QLTVR R + M
Sbjct: 283 QVVKAFQEFIRSTPYSAYNPETYSGHWKQLTVRTSRR-------------------GQAM 323
Query: 480 LIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL 539
I + LA+ F AG ++ GV+ + +
Sbjct: 324 AIVYFHPQKLSPEELAGLKASLAQHFMAGPGKAT--------------GVTCLYFVEEGQ 369
Query: 540 RLLSIPKADGEPEESNDVVEAR-IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWAD 598
R P +G P E V R IH+ + L F ISP AFFQVNT AAE LY++ DWA
Sbjct: 370 R--KTPSLEGLPLE--HVAGDRCIHEDLLGLTFRISPHAFFQVNTPAAEVLYTVIQDWAQ 425
Query: 599 LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658
L + + DVCCGTGTIGL LA +V V+GIE+ AV DA NA+ N + N F C +A
Sbjct: 426 LDTGSTVLDVCCGTGTIGLALAPKVKRVVGIELCQEAVEDARVNAQDNELSNVEFHCGRA 485
Query: 659 EDVMGSLL 666
ED++ +L+
Sbjct: 486 EDLVPALV 493
>gi|195127973|ref|XP_002008441.1| GI11815 [Drosophila mojavensis]
gi|193920050|gb|EDW18917.1| GI11815 [Drosophila mojavensis]
Length = 597
Score = 179 bits (455), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 128/400 (32%), Positives = 190/400 (47%), Gaps = 50/400 (12%)
Query: 269 AEAHASSNGHEDGNGNDEGLAGDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLK 328
A+A A G ND GD + ++A + PLA M Y QLE K ++ +LK
Sbjct: 126 AKASADPLQKRRGEAND----GDVKPKRQRTAVEATCPLAEMPYEQQLEQKTEEMSALLK 181
Query: 329 KLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAK 388
K T+ R N + P + +G+L SP V GYRNK EF+VG + +
Sbjct: 182 KYTQELRHL--NADAKPHLD---------KFEFKGVLPSPTVQGYRNKNEFTVGKNAAGE 230
Query: 389 PTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQ 448
VGF LG++ +G V E + P++ A A FQ+ ++QS +N N G +RQ
Sbjct: 231 IVVGFRLGSYSDGSVEVAEVQELPHLPAQAKWAARSFQQLVRQSKFQPFNPDGNVGHFRQ 290
Query: 449 LTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAG 508
L VR + G E+ML+A + S+ ++ + E ++ KAF
Sbjct: 291 LMVRCSSATG------------------ELMLVAGIYSSNLNETEL-LELQQELKAFYEQ 331
Query: 509 ATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISN 568
+ + T+L QD V +A + + G I D+I
Sbjct: 332 PEQNE-THKCTSLYYQD------VKHREAGQMVNPVTHLSGS---------THITDTIQG 375
Query: 569 LRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIG 628
L+F ISP AFFQ+NT A+ LY D A +T++ D+CCGTGTI L A V+G
Sbjct: 376 LQFRISPLAFFQINTAGADVLYQQAIDLAAPNQETIMLDICCGTGTIALAFAKHCKQVLG 435
Query: 629 IEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
+E+ A+ DA NAE NGIKNC+F A+D + S++++
Sbjct: 436 VEIVPDAIKDAEHNAETNGIKNCKFFTGNADDYIKSMVRE 475
>gi|158300145|ref|XP_320147.4| AGAP012408-PA [Anopheles gambiae str. PEST]
gi|157013016|gb|EAA00138.4| AGAP012408-PA [Anopheles gambiae str. PEST]
Length = 577
Score = 179 bits (455), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 145/498 (29%), Positives = 220/498 (44%), Gaps = 76/498 (15%)
Query: 173 LPRKWHSDNLKKFLADHGILYKSAKK--KKGMTVGFVKFESVEQLKNAVEELEGISIGNK 230
LP+ + LKK L L + K K G F+ F + E + A++ L+G K
Sbjct: 31 LPKYYGIGELKKLLNVKMKLSTNKIKIMKPGSPFIFICFRNQEDREAAIKALDGYKWKGK 90
Query: 231 TLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAG 290
+L P +P L K+AS + G
Sbjct: 91 SLSAFEAKP--------APDPLIRRRKEASTAE--------------------------G 116
Query: 291 DGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMK 350
+ +K ++ T LA+++Y QL+ K++ + +L+K + + P +L ++ K
Sbjct: 117 EPLNIKRRTVEASATSLAYLTYDEQLKQKQSEMENVLQKFGKELWSSIP---TLRTFVEK 173
Query: 351 SREI-GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPV 409
R + GGLPC E I SP+ +GYRNKCEFS+G VGF +G++ G VE
Sbjct: 174 QRLLHGGLPCAFEPIRPSPMQDGYRNKCEFSIGKDALGVKRVGFRVGSYSNGFLEVESIA 233
Query: 410 DCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVN 469
++ E + +F++F+Q S V++ G +RQLTVR + G+ + V V
Sbjct: 234 HLKHIPECMKQTVVLFEQFVQSSPFDVYSAETYQGHFRQLTVRMSHATGQVMVV----VG 289
Query: 470 ISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGV 529
+ ++SE T ++V E L A SS VIQ Q
Sbjct: 290 VHLQSLSEE------EKQTMKSSIV----ECLTSEPGKQAGISSIHFE----VIQKRQQG 335
Query: 530 SNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKL 589
P + + E I D+I L F ISP AFFQ+NT AAE L
Sbjct: 336 QYTNPIE------------------HLYGETHIEDTILGLTFRISPAAFFQINTPAAEVL 377
Query: 590 YSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIK 649
Y D A T + D+CCGTGTIGL A V+G+++ A+ DA NA+ NGI+
Sbjct: 378 YQCAIDVAAPSKSTSILDICCGTGTIGLCFARHCKQVLGVDIVEQAIEDAKHNAQKNGIE 437
Query: 650 NCRFVCAKAEDVMGSLLK 667
NC F ++D++ SL++
Sbjct: 438 NCSFFAGNSDDLIMSLIR 455
>gi|346473930|gb|AEO36809.1| hypothetical protein [Amblyomma maculatum]
Length = 456
Score = 179 bits (454), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 133/343 (38%), Positives = 178/343 (51%), Gaps = 41/343 (11%)
Query: 328 KKLTRNARKACPNGVSLPEWIMKSREIGGL-PCKLEGILGSPLVNGYRNKCEFSVGYSLQ 386
K + + ARK L WI K RE L C LE I SP+V+GYRNK EF+VG L+
Sbjct: 58 KIMVKYARKLEQVNSGLKRWISKQREAHKLGVCPLESIRASPVVDGYRNKNEFTVGRHLE 117
Query: 387 A-KPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGF 445
+ TVGF + ++R+G +V + NV E A K A FQ++++QS +N + G+
Sbjct: 118 TGEATVGFRISSYRQGSMSVASADELSNVPESAKKVAKCFQDYVRQSGKEPFNPETHEGY 177
Query: 446 WRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAF 505
WRQLTVR R +M IA + + ++ E E+L + F
Sbjct: 178 WRQLTVRTTRQ-------------------GHIMAIAVIHPQALTEEEISEEKEKLRQFF 218
Query: 506 AAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEAR-IHD 564
G SS +T+ Q ++D E E V + I +
Sbjct: 219 TEGPGKSSN---ITSFHFQR----------------FDKKRSDEEQPEYEHVFGTQDIEE 259
Query: 565 SISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG 624
S+ NL F +SP AFFQVNT AAE LY + ADL DT L DVCCGTGTIGL+LA +V
Sbjct: 260 SLLNLIFQVSPDAFFQVNTPAAEVLYRTAEEVADLTLDTTLLDVCCGTGTIGLSLASKVN 319
Query: 625 MVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLK 667
V GIE+ AV +A RNAE+NGIKN FV KAEDV+ +++
Sbjct: 320 RVYGIEVCKRAVQNAKRNAELNGIKNASFVQGKAEDVIQDVIR 362
Score = 43.1 bits (100), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 26/34 (76%)
Query: 749 KNVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
K +VAIVDPPR GLH V++ LR A +++L+++
Sbjct: 368 KEIVAIVDPPRQGLHNKVLRTLRATASIKKLVYV 401
>gi|195496369|ref|XP_002095665.1| GE22531 [Drosophila yakuba]
gi|194181766|gb|EDW95377.1| GE22531 [Drosophila yakuba]
Length = 615
Score = 178 bits (452), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 124/391 (31%), Positives = 181/391 (46%), Gaps = 78/391 (19%)
Query: 296 KVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNG-VSLPEWIMKSREI 354
K ++A + PL+H++Y QL+ K +A +L K T+ RK P +L ++
Sbjct: 156 KQRTAVEATCPLSHIAYDQQLKQKSEEMAALLAKYTQELRKVNPRAKANLDKF------- 208
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
+ G+L SP VNGYRNK EF+VG + + VGF LG + +G V E D P++
Sbjct: 209 -----QFHGVLPSPTVNGYRNKNEFTVGKNSAGEVVVGFRLGCYSDGSVEVAEVADLPHL 263
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
E A A FQ+ +++S +N N G +RQL VR + G
Sbjct: 264 PEQAKWAARSFQDLVRRSKFLPFNPDGNVGHFRQLMVRCSSATG---------------- 307
Query: 475 ISEVMLIAQVSSATF--DDAV-----VNSEFERLAKAFAAGATASSPSLPLTALVIQDHQ 527
E+ML+A + S+ D+ V + S +E LAK
Sbjct: 308 --ELMLVAGIYSSNLSEDEQVELKQELKSFYEELAK------------------------ 341
Query: 528 GVSNVAPADAPLRLLSIPKADGEPEESNDVV--------EARIHDSISNLRFCISPTAFF 579
DAP + S+ D + E+ + I D+I L+F ISP AFF
Sbjct: 342 --------DAPYKCTSLYYQDVKHREAGQTINPVEHISGSTHITDTIQGLQFRISPLAFF 393
Query: 580 QVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDA 639
Q+NT A LY D DT + D+CCGTGTI L A V+G+E+ A+ DA
Sbjct: 394 QINTEGANVLYQKAIDLVAPTEDTTMLDICCGTGTITLAFAKHCKKVMGVEIVPDAIKDA 453
Query: 640 HRNAEINGIKNCRFVCAKAEDVMGSLLKDYL 670
NAE NGIKN +F A+D + S++++ L
Sbjct: 454 EFNAEANGIKNAKFFTGNADDFIKSMVREAL 484
>gi|354480617|ref|XP_003502501.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A-like
isoform 1 [Cricetulus griseus]
gi|344241497|gb|EGV97600.1| tRNA (uracil-5-)-methyltransferase-like A [Cricetulus griseus]
Length = 625
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 145/499 (29%), Positives = 209/499 (41%), Gaps = 80/499 (16%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L ++PR ++++FL G+ K FV F S + A+ L G
Sbjct: 78 LQNVPRHASFSDVRRFLGRFGLQSHKIKLFGQPPCAFVTFRSAAERDKALRVLHGALWKG 137
Query: 230 KTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLA 289
+ L V P++ PM + ++G+G
Sbjct: 138 RPLSVRLARPKA------DPM-----------------------ARKRRQEGDGEP---- 164
Query: 290 GDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIM 349
V DVVTPL + YS QLE K+ ++L+KL + N LP W++
Sbjct: 165 ------SVTQIADVVTPLWTVPYSEQLEQKRQECERVLQKLAKEI--GSTNRALLP-WLL 215
Query: 350 KSREIGGLPC-KLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEE 407
R+ C LEG+ SP YRNKCEF VG + + TVG G ++ G AV
Sbjct: 216 TQRQRHNKACCPLEGVRPSPQQTEYRNKCEFLVGVGIDGEDNTVGCRFGKYKGGTCAVAA 275
Query: 408 PVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLE 467
P D ++ E + FQEF++ + ++ +G W+QLTVR R
Sbjct: 276 PFDTVHIPEATKQVVKAFQEFIRSTPYLAYDPETYTGHWKQLTVRTSRR----------- 324
Query: 468 VNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQ 527
+ M I + L F G +S
Sbjct: 325 --------GQAMAIVYFHPQKLSSEEMAGLKASLVYHFMEGPGKAS-------------- 362
Query: 528 GVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAE 587
GV+ + + R P +G P E + + I + + L F ISP AFFQVNT AAE
Sbjct: 363 GVTCLYFVEEGQR--KTPSQEGLPLE-HMAGDQCIQEDLLGLTFRISPHAFFQVNTPAAE 419
Query: 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEING 647
LY++ +WA L + + DVCCGTGTIGL LA +V V+GIE+ AV DA NA N
Sbjct: 420 VLYTVIQEWAQLDGSSTVLDVCCGTGTIGLALARKVKRVVGIELCQEAVEDARVNALTNE 479
Query: 648 IKNCRFVCAKAEDVMGSLL 666
+ N F C +AED++ L+
Sbjct: 480 LSNVEFHCGRAEDLVPGLV 498
>gi|195020688|ref|XP_001985248.1| GH16956 [Drosophila grimshawi]
gi|193898730|gb|EDV97596.1| GH16956 [Drosophila grimshawi]
Length = 613
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 120/373 (32%), Positives = 175/373 (46%), Gaps = 46/373 (12%)
Query: 298 KSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGL 357
++A + PLA M Y QLE K ++ +LKK T+ R+ N + P
Sbjct: 153 RTAVEATCPLAEMPYEQQLEQKTEEMSALLKKYTQELRRL--NADAKPHLD--------- 201
Query: 358 PCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEI 417
+ G+L SP+V GYRNK EF+VG + + + VGF LG++ +G V E P++
Sbjct: 202 KFQFNGVLPSPIVQGYRNKNEFTVGKNAEGEIVVGFRLGSYSDGSVEVAEVQQLPHLPAQ 261
Query: 418 ACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISE 477
A A FQ+ ++QS +N N G +RQL VR + G E
Sbjct: 262 AKWAAQSFQQLVRQSKFQPFNPVGNVGHFRQLMVRSSSATG------------------E 303
Query: 478 VMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADA 537
+ML+A + S+ +A E ++ K F A ++ T+L QD + +
Sbjct: 304 LMLVAGIYSSNLSEAE-QLELQQELKNFYEQAEQNAEH-KCTSLYYQDVKHREAGQMVNP 361
Query: 538 PLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWA 597
LL I D+I L+F ISP AFFQ+NT A LY D A
Sbjct: 362 VTHLLG---------------STHITDTIQELQFRISPLAFFQINTAGANVLYQQAIDLA 406
Query: 598 DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAK 657
DT + D+CCGTGTI L A V+G+E+ A+ DA NA NGI NC+F
Sbjct: 407 APSKDTTMLDICCGTGTIALAFARHCKQVLGVEIVPDAIKDAEYNASANGITNCKFFAGN 466
Query: 658 AEDVMGSLLKDYL 670
A+D + S++++ L
Sbjct: 467 ADDFIKSMVREAL 479
>gi|307191668|gb|EFN75142.1| HpaII tiny fragments locus 9c protein [Harpegnathos saltator]
Length = 576
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 120/372 (32%), Positives = 178/372 (47%), Gaps = 55/372 (14%)
Query: 305 TPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI-GGLPCKLEG 363
TPL +M Y QLE K+ + +L K+ + K L +WI R++ GLPC+L+
Sbjct: 149 TPLWNMPYENQLEFKQKEMRSILIKIGQQMLK---ESRGLTDWINSQRKLYNGLPCELQN 205
Query: 364 ILGSPLVNGYRNKCEFSVGY-SLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYA 422
IL + + YRNKCEF++G S + + +GF L ++ G TAV D ++ +
Sbjct: 206 ILSANVTEAYRNKCEFTIGRGSERNEIMIGFRLSSYTSGSTAVGPIDDLCHIPQNMKTAV 265
Query: 423 SIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIA 482
I + F+ +SDL +N +SG+WRQ+ R R+ +MLI
Sbjct: 266 KILETFICESDLEPFNPVDHSGYWRQVAARTTRA-------------------GHLMLIV 306
Query: 483 QVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQ--DHQGVSNVAPADAPLR 540
+ + +L F G A + +T+L Q D +G+
Sbjct: 307 GIHPQDLSGDELEKLRSQLRTFFETGEGAKAC---VTSLYFQTIDKKGIGG--------- 354
Query: 541 LLSIPKADGEPEESNDVV-----EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGD 595
ESND + I +++ ++F +SP AFFQVNTL AE LY D
Sbjct: 355 ------------ESNDTLYHVSGTEYIEETLLGMKFRVSPQAFFQVNTLGAEVLYKAVID 402
Query: 596 WADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVC 655
A+ DT L DVCCGTGTIGL + G V+GIE+ A+ DA NA NG+ NC F
Sbjct: 403 LAESTTDTALLDVCCGTGTIGLCFSKHCGEVLGIEVIPDAIKDAKENAIKNGVTNCEFFV 462
Query: 656 AKAEDVMGSLLK 667
KAED++ +++
Sbjct: 463 GKAEDILSPVIQ 474
>gi|426247989|ref|XP_004023650.1| PREDICTED: LOW QUALITY PROTEIN: tRNA (uracil-5-)-methyltransferase
homolog A, partial [Ovis aries]
Length = 568
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 128/368 (34%), Positives = 173/368 (47%), Gaps = 37/368 (10%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSR-EIGGLPCK 360
DVVTPL + Y QLE K+ Q+L+KL R N LP W++ R + C
Sbjct: 108 DVVTPLWAVPYEEQLERKRQECEQVLQKLAREI--GSTNRALLP-WLLSQRHKHNKACCP 164
Query: 361 LEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIAC 419
LEG+ SP YRNKCEF VG + + TVG L +R G AV P D ++
Sbjct: 165 LEGVRPSPQQTEYRNKCEFLVGVGVDGEDNTVGCRLSKYRSGTCAVAAPFDTVHIPGATK 224
Query: 420 KYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVM 479
+ FQEF++ + ++ SG W+QLTVR R + M
Sbjct: 225 QVVKAFQEFIRSTPYSAYDPETYSGHWKQLTVRTSRR-------------------GQAM 265
Query: 480 LIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL 539
IA + LA+ F G +S +T L + + P
Sbjct: 266 AIAYFHPQNLSPEELAGLKTSLAQYFMEGPGKASG---VTCLYFVEEXXXXXRSTGKTP- 321
Query: 540 RLLSIPKADGEPEESNDVVEAR-IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWAD 598
+G P E V R I + + L F ISP AFFQVNT AAE LY+L DWA
Sbjct: 322 ------SQEGLPLE--HVAGDRCIREDVLGLTFRISPHAFFQVNTAAAEVLYTLIQDWAQ 373
Query: 599 LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658
L + + DVCCGTGTIGL LA +V V+G+E++ AV DA NA N + N F C +A
Sbjct: 374 LDAGSTVLDVCCGTGTIGLALARKVKRVVGVELSQEAVEDARVNALDNELSNVEFHCGRA 433
Query: 659 EDVMGSLL 666
E+++ +L+
Sbjct: 434 EELVPALV 441
>gi|354480619|ref|XP_003502502.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A-like
isoform 2 [Cricetulus griseus]
Length = 612
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 145/499 (29%), Positives = 209/499 (41%), Gaps = 80/499 (16%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L ++PR ++++FL G+ K FV F S + A+ L G
Sbjct: 65 LQNVPRHASFSDVRRFLGRFGLQSHKIKLFGQPPCAFVTFRSAAERDKALRVLHGALWKG 124
Query: 230 KTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLA 289
+ L V P++ PM + ++G+G
Sbjct: 125 RPLSVRLARPKA------DPM-----------------------ARKRRQEGDGEP---- 151
Query: 290 GDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIM 349
V DVVTPL + YS QLE K+ ++L+KL + N LP W++
Sbjct: 152 ------SVTQIADVVTPLWTVPYSEQLEQKRQECERVLQKLAKEI--GSTNRALLP-WLL 202
Query: 350 KSREIGGLPC-KLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEE 407
R+ C LEG+ SP YRNKCEF VG + + TVG G ++ G AV
Sbjct: 203 TQRQRHNKACCPLEGVRPSPQQTEYRNKCEFLVGVGIDGEDNTVGCRFGKYKGGTCAVAA 262
Query: 408 PVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLE 467
P D ++ E + FQEF++ + ++ +G W+QLTVR R
Sbjct: 263 PFDTVHIPEATKQVVKAFQEFIRSTPYLAYDPETYTGHWKQLTVRTSRR----------- 311
Query: 468 VNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQ 527
+ M I + L F G +S
Sbjct: 312 --------GQAMAIVYFHPQKLSSEEMAGLKASLVYHFMEGPGKAS-------------- 349
Query: 528 GVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAE 587
GV+ + + R P +G P E + + I + + L F ISP AFFQVNT AAE
Sbjct: 350 GVTCLYFVEEGQR--KTPSQEGLPLE-HMAGDQCIQEDLLGLTFRISPHAFFQVNTPAAE 406
Query: 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEING 647
LY++ +WA L + + DVCCGTGTIGL LA +V V+GIE+ AV DA NA N
Sbjct: 407 VLYTVIQEWAQLDGSSTVLDVCCGTGTIGLALARKVKRVVGIELCQEAVEDARVNALTNE 466
Query: 648 IKNCRFVCAKAEDVMGSLL 666
+ N F C +AED++ L+
Sbjct: 467 LSNVEFHCGRAEDLVPGLV 485
>gi|357603733|gb|EHJ63900.1| RNA m5u methyltransferase [Danaus plexippus]
Length = 605
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 116/368 (31%), Positives = 177/368 (48%), Gaps = 41/368 (11%)
Query: 301 RDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCK 360
+D VTP ++ Y QL K+ + +L K K N + E K + GL +
Sbjct: 146 KDAVTPYWNIPYEEQLALKEKEVKNLLMKFDNEVWKIDKNKRNSIE--SKRKLYNGLSFE 203
Query: 361 LEGILGSPLVNGYRNKCEFSVGYSLQA-KPTVGFMLGNFREGVTAVEEPVDCPNVSEIAC 419
L+ I SP+ GYRNKCEF+VG KPTVGF LG++ G V ++S+
Sbjct: 204 LKPIQRSPITAGYRNKCEFTVGIDDDTGKPTVGFRLGSYVTGTVGVAPVGGLTHISDKMK 263
Query: 420 KYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVM 479
+ +FQ F+++S++ ++ SG+WR LTVRE G ++M
Sbjct: 264 QAVLLFQNFVRKSNMSPFSPADYSGYWRYLTVRESTHNG------------------DIM 305
Query: 480 LIAQVSSATFDDAVVNSEFERLAKAFAAG-ATASSPSLPLTALVIQDHQGVSNVAPADAP 538
LI A + + + E L + ++ + + + ++ ++ + P
Sbjct: 306 LIV----AMYPQDLTKDKLEELKRELIEHFSSEEAQACGVKSVYFEEITKKRSGEDGSKP 361
Query: 539 LRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWAD 598
+ L+ I D+I L+F ISP AFFQ+NT A LY D ++
Sbjct: 362 IHLMG---------------ATHIVDTILGLQFRISPEAFFQINTAGANILYQSAIDLSN 406
Query: 599 LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658
+ + L D+CCGTGTIGL A VG V+G+E+ + AV DA NAE+N I NC F +A
Sbjct: 407 VNEKSTLIDICCGTGTIGLCFAKHVGKVLGVELVSEAVKDARYNAELNSIDNCSFFAGRA 466
Query: 659 EDVMGSLL 666
EDV+ S+L
Sbjct: 467 EDVLPSVL 474
>gi|124487423|ref|NP_001074468.1| tRNA (uracil-5-)-methyltransferase homolog A isoform 2 [Mus
musculus]
gi|74139903|dbj|BAE31790.1| unnamed protein product [Mus musculus]
gi|74141122|dbj|BAE22119.1| unnamed protein product [Mus musculus]
gi|74191426|dbj|BAE30293.1| unnamed protein product [Mus musculus]
gi|74191631|dbj|BAE30387.1| unnamed protein product [Mus musculus]
gi|74198831|dbj|BAE30643.1| unnamed protein product [Mus musculus]
gi|74198924|dbj|BAE30683.1| unnamed protein product [Mus musculus]
gi|74207465|dbj|BAE30911.1| unnamed protein product [Mus musculus]
gi|74212582|dbj|BAE31030.1| unnamed protein product [Mus musculus]
gi|74214625|dbj|BAE31153.1| unnamed protein product [Mus musculus]
gi|74219662|dbj|BAE29598.1| unnamed protein product [Mus musculus]
gi|74220248|dbj|BAE31303.1| unnamed protein product [Mus musculus]
gi|74225302|dbj|BAE31584.1| unnamed protein product [Mus musculus]
gi|74225530|dbj|BAE31672.1| unnamed protein product [Mus musculus]
gi|74228782|dbj|BAE21880.1| unnamed protein product [Mus musculus]
gi|148665091|gb|EDK97507.1| HpaII tiny fragments locus 9c, isoform CRA_a [Mus musculus]
Length = 613
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 145/498 (29%), Positives = 208/498 (41%), Gaps = 78/498 (15%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L ++PR ++++FL G+ K FV F S + A+ L G
Sbjct: 67 LQNVPRHASFSDVRRFLGRFGLQSHKIKLFGQPPCAFVTFRSAAERDKALRVLHGALWKG 126
Query: 230 KTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLA 289
L V P++ PM + SE +V
Sbjct: 127 CPLSVRLARPKA------DPMARKRRQEGDSEPSV------------------------- 155
Query: 290 GDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIM 349
DVVTPL + Y+ QLE K+ ++L+KL + N LP ++
Sbjct: 156 --------TQIADVVTPLWTVPYTEQLEQKRLECERVLQKLAKEIGNT--NRALLPWLLL 205
Query: 350 KSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEP 408
+ ++ C LEG+ SP YRNKCEF VG + K TVG LG ++ G AV P
Sbjct: 206 QRQQHNKACCPLEGVKPSPQQTEYRNKCEFLVGVGVDGKDNTVGCRLGKYKGGTCAVAAP 265
Query: 409 VDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEV 468
D ++ E + FQEF++ + ++ +G W+QLTVR
Sbjct: 266 FDTVHIPEATKQVVKAFQEFIRSTPYSAYDPETYTGHWKQLTVRTSSR------------ 313
Query: 469 NISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQG 528
+ M IA V L F G +S G
Sbjct: 314 -------GQAMAIAYFHPQKLSSEEVAGLKASLVCHFMEGPGKAS--------------G 352
Query: 529 VSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEK 588
V+++ + R P +G P E + + I + + L F ISP AFFQVNT AAE
Sbjct: 353 VTSLYFVEEGQR--KTPSQEGLPLE-HMAGDQCIQEDLLGLTFRISPHAFFQVNTPAAEV 409
Query: 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI 648
LY++ +WA L + + DVCCGTGTIGL LA +V V+GIE+ AV DA NA N +
Sbjct: 410 LYTVIQEWAQLDGGSTVLDVCCGTGTIGLALAPKVKRVVGIELCQEAVEDARMNALTNEL 469
Query: 649 KNCRFVCAKAEDVMGSLL 666
N F C +AED++ L+
Sbjct: 470 SNVEFHCGRAEDLVPGLV 487
>gi|351715469|gb|EHB18388.1| tRNA (uracil-5-)-methyltransferase-like protein A [Heterocephalus
glaber]
Length = 664
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 153/527 (29%), Positives = 215/527 (40%), Gaps = 108/527 (20%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L +LPR ++++FL G+ K FV F S + A+ L G
Sbjct: 88 LQNLPRHASFSDVRRFLGRFGLQPHKTKLFGQPPCAFVTFRSAAERDKALRVLHGALWKG 147
Query: 230 KTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLA 289
+ L V P++ PM A++ +
Sbjct: 148 RPLSVRLARPKA------DPM-----ARRRQQE--------------------------- 169
Query: 290 GDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIM 349
G+G L + A DVVTPL + Y+ QLE K+ Q+L++L + N LP +
Sbjct: 170 GEGEPLATQIA-DVVTPLWTVPYAEQLERKRLECEQVLQRLAKEI--GSTNRALLPWLLT 226
Query: 350 KSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEP 408
+ + C LEG+ SP YRNKCEF VG + K TVG LG ++ G AV P
Sbjct: 227 QRHKHNKACCPLEGVRPSPQQTEYRNKCEFLVGIGVDGKDNTVGCRLGKYKGGTCAVAAP 286
Query: 409 VDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEV 468
D ++ E + FQEF++ + ++ +G W+QLTVR R
Sbjct: 287 FDTVHIPEATKQVVKAFQEFIRSTPYSAYDPETYAGHWKQLTVRTSRR------------ 334
Query: 469 NISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQG 528
+ M IA + LA+ F G +S G
Sbjct: 335 -------GQAMAIAYFHPQKLSPEELTGLKTSLAQHFMEGPGRAS--------------G 373
Query: 529 VSNVAPADAPLRLLSIPKADGEPEESNDVVEAR-IHDSISNLRFCISPTAFFQVNTLAAE 587
V+ + R P +G P E V R I + + L F ISP AFFQVNT AE
Sbjct: 374 VTCLYFVKEGQR--KTPSQEGLPLE--HVAGDRCIQEDLLGLTFQISPHAFFQVNTPGAE 429
Query: 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEING 647
LY++ DWA L + + DVCCGTGTIGL LA +V VIGIE++ AV DA NA NG
Sbjct: 430 VLYTVIQDWAQLDKGSTVLDVCCGTGTIGLALAQKVKKVIGIELSQEAVEDARVNAHANG 489
Query: 648 ----------------------------IKNCRFVCAKAEDVMGSLL 666
+ N F C +AED++ +L+
Sbjct: 490 EYLQAMGRAGPEREGPQGPLIAMVLPPELNNVEFHCGRAEDLVPALV 536
>gi|195479026|ref|XP_002086546.1| GE22791 [Drosophila yakuba]
gi|194186336|gb|EDW99947.1| GE22791 [Drosophila yakuba]
Length = 615
Score = 176 bits (446), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 124/378 (32%), Positives = 181/378 (47%), Gaps = 52/378 (13%)
Query: 296 KVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNG-VSLPEWIMKSREI 354
K ++A + PL+H++Y QL+ K +A +L K T+ RK P +L ++
Sbjct: 156 KQRTAVEATCPLSHIAYDQQLKQKSEEMAALLAKYTQELRKVNPRAKANLDKF------- 208
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
+ G+L SP VNGYRNK EF+VG + + VGF LG + +G V E D P++
Sbjct: 209 -----QFHGVLPSPTVNGYRNKNEFTVGKNSAGEVVVGFRLGCYSDGSVEVAEVEDLPHL 263
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
E A A FQ+ +++S +N N G +RQL VR + G
Sbjct: 264 PEQAKWAARSFQDLVRRSKFLPFNPDGNVGHFRQLMVRCSSATG---------------- 307
Query: 475 ISEVMLIAQVSSATF--DDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNV 532
E+ML+A + S+ D+ V E ++ K F +P T+L QD V
Sbjct: 308 --ELMLVAGIYSSNLSGDEQV---ELKQELKFFYEELAKDAP-YKCTSLYYQD------V 355
Query: 533 APADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSL 592
+A + + G I D+I L+F ISP AFFQ+NT A LY
Sbjct: 356 KHREAGQTINPVEHISG---------STHITDTIQGLQFRISPLAFFQINTEGANVLYQK 406
Query: 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCR 652
D DT + D+CCGTGTI L A V+G+E+ A+ DA NAE NGIKN +
Sbjct: 407 AIDLVAPTEDTTMLDICCGTGTITLAFAKHCKKVMGVEIVPDAIKDAEFNAEANGIKNAK 466
Query: 653 FVCAKAEDVMGSLLKDYL 670
F A+D + S++++ L
Sbjct: 467 FFTGNADDFIKSMVREAL 484
>gi|74138627|dbj|BAE27134.1| unnamed protein product [Mus musculus]
Length = 634
Score = 176 bits (446), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 146/498 (29%), Positives = 210/498 (42%), Gaps = 78/498 (15%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L ++PR ++++FL G+ K FV F S + A+ L G
Sbjct: 67 LQNVPRHASFSDVRRFLGRFGLQSHKIKLFGQPPCAFVTFRSAAERDKALRVLHGALWKG 126
Query: 230 KTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLA 289
L V P++ PM +G +Q +S
Sbjct: 127 CPLSVRLARPKA------DPM--AGKRRQEGDSEP------------------------- 153
Query: 290 GDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIM 349
V DVVTPL + Y+ QLE K+ ++L+KL + N LP ++
Sbjct: 154 ------SVTQIADVVTPLWTVPYTEQLEQKRLECERVLQKLAKEIGNT--NRALLPWLLL 205
Query: 350 KSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEP 408
+ ++ C LEG+ SP YRNKCEF VG + K TVG LG ++ G AV P
Sbjct: 206 QRQQHNKACCPLEGVKPSPQQTEYRNKCEFLVGVGVDGKDNTVGCRLGKYKGGTCAVAAP 265
Query: 409 VDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEV 468
D ++ E + FQEF++ + ++ +G W+QLTVR
Sbjct: 266 FDTVHIPEATKQVVKAFQEFIRSTPYSAYDPETYTGHWKQLTVRTSSR------------ 313
Query: 469 NISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQG 528
+ M IA V L F G +S G
Sbjct: 314 -------GQAMAIAYFHPQKLSSEEVAGLKASLVCHFMEGPGKAS--------------G 352
Query: 529 VSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEK 588
V+++ + R P +G P E + + I + + L F ISP AFFQVNT AAE
Sbjct: 353 VTSLYFVEEGQR--KTPSQEGLPLE-HMAGDQCIQEDLLGLTFRISPHAFFQVNTPAAEV 409
Query: 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI 648
LY++ +WA L + + DVCCGTGTIGL LA +V V+GIE+ AV DA NA N +
Sbjct: 410 LYTVIQEWAQLDGGSTVLDVCCGTGTIGLALAPKVKRVVGIELCQEAVEDARMNALTNEL 469
Query: 649 KNCRFVCAKAEDVMGSLL 666
N F C +AED++ L+
Sbjct: 470 SNVEFHCGRAEDLVPGLV 487
>gi|195440654|ref|XP_002068155.1| GK12558 [Drosophila willistoni]
gi|194164240|gb|EDW79141.1| GK12558 [Drosophila willistoni]
Length = 612
Score = 176 bits (446), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 127/404 (31%), Positives = 185/404 (45%), Gaps = 52/404 (12%)
Query: 270 EAHASSNGHEDGNGNDEGLAGDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKK 329
EA AS++ DE G + K+A + PLA + Y QL+ K + ++ +LKK
Sbjct: 141 EAKASADPLHKRRAEDEA-NNSGQPKRRKTAVEATCPLAALPYEDQLKTKTDEMSSLLKK 199
Query: 330 LTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP 389
T+ RK P + + EG++ S +NGYRNK EF+VG + +
Sbjct: 200 YTQELRKVNPEAKPHLDKF-----------QFEGVIPSTTINGYRNKNEFTVGKNNNGEI 248
Query: 390 TVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQL 449
VGF LG++ +G V E + P++ + A A FQ ++QS +N N G +RQL
Sbjct: 249 VVGFRLGSYSDGSVEVAEIQELPHLPDAAKWAAESFQRLVRQSKFLPFNPVGNVGHFRQL 308
Query: 450 TVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGA 509
VR S E+ML+A V S+ + + E L +
Sbjct: 309 MVRYSNSA------------------HELMLVAGVYSSNLSETEQHELKEELKTFYEQQV 350
Query: 510 TASSPSLPLTALVIQD---HQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSI 566
SP ++L QD + V P + LL I D+I
Sbjct: 351 DPDSP-YKCSSLYYQDVKHREAGQMVNPVE---HLLG---------------STHITDTI 391
Query: 567 SNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMV 626
L+F ISP AFFQ+NT A LY D A D+ + D+CCGTGTI L+ A V
Sbjct: 392 QGLQFRISPLAFFQINTEGANVLYQKAIDLAAPTKDSTVLDICCGTGTIALSFAKHCKKV 451
Query: 627 IGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYL 670
+G+E+ A+ DA NAE NGIKNC+F A+D + S++ + L
Sbjct: 452 LGVEIVPDAIKDAEFNAEANGIKNCKFFTGNADDFIKSMVHEAL 495
>gi|148665095|gb|EDK97511.1| HpaII tiny fragments locus 9c, isoform CRA_e [Mus musculus]
Length = 626
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 124/371 (33%), Positives = 174/371 (46%), Gaps = 39/371 (10%)
Query: 297 VKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGG 356
V DVVTPL + Y+ QLE K+ ++L+KL + N LP +++ ++
Sbjct: 168 VTQIADVVTPLWTVPYTEQLEQKRLECERVLQKLAKEIGNT--NRALLPWLLLQRQQHNK 225
Query: 357 LPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVS 415
C LEG+ SP YRNKCEF VG + K TVG LG ++ G AV P D ++
Sbjct: 226 ACCPLEGVKPSPQQTEYRNKCEFLVGVGVDGKDNTVGCRLGKYKGGTCAVAAPFDTVHIP 285
Query: 416 EIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNI 475
E + FQEF++ + ++ +G W+QLTVR
Sbjct: 286 EATKQVVKAFQEFIRSTPYSAYDPETYTGHWKQLTVRTSSR------------------- 326
Query: 476 SEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPA 535
+ M IA V L F G +S GV+++
Sbjct: 327 GQAMAIAYFHPQKLSSEEVAGLKASLVCHFMEGPGKAS--------------GVTSLYFV 372
Query: 536 DAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGD 595
+ R P +G P E + + I + + L F ISP AFFQVNT AAE LY++ +
Sbjct: 373 EEGQR--KTPSQEGLPLE-HMAGDQCIQEDLLGLTFRISPHAFFQVNTPAAEVLYTVIQE 429
Query: 596 WADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVC 655
WA L + + DVCCGTGTIGL LA +V V+GIE+ AV DA NA N + N F C
Sbjct: 430 WAQLDGGSTVLDVCCGTGTIGLALAPKVKRVVGIELCQEAVEDARMNALTNELSNVEFHC 489
Query: 656 AKAEDVMGSLL 666
+AED++ L+
Sbjct: 490 GRAEDLVPGLV 500
>gi|194751718|ref|XP_001958172.1| GF10790 [Drosophila ananassae]
gi|190625454|gb|EDV40978.1| GF10790 [Drosophila ananassae]
Length = 613
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 141/470 (30%), Positives = 204/470 (43%), Gaps = 88/470 (18%)
Query: 204 VGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRSFDKNIKSPMTLSGNAKQASESA 263
FV F ++E + A+E L G K LK A A SA
Sbjct: 90 FAFVCFRTLEDQQRALETLNGYKWKGKVLK----------------------AIAAKASA 127
Query: 264 VPGELAEAHASSNGHEDGNGNDEGLAGDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSI 323
P L + A+ E A +G+ K ++A + PLA + Y Q+ HK +
Sbjct: 128 DP--LQKKRAA-----------EDQANNGNPKKQRTAIEATCPLAELPYEDQVRHKAEEM 174
Query: 324 AQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGY 383
+LKK T+ + P + I + G++ SP VNGYRNK EF+VG
Sbjct: 175 TNLLKKYTQELWRHNPQAKKTVDKI-----------QFHGVVPSPTVNGYRNKNEFTVGK 223
Query: 384 SLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNS 443
+ + + VGF LG + +G V D P++ E A A FQ+ ++QS +N N
Sbjct: 224 NSEGEIVVGFRLGCYSDGSVEVAGVEDLPHLPEQAKWAAQSFQKLVRQSKFLPFNPDGNL 283
Query: 444 GFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAK 503
G +RQL VR RS G E+ML+A + S+ D + E ++ K
Sbjct: 284 GHFRQLMVRCSRSTG------------------ELMLVAGIYSSNLDLSE-QRELKKELK 324
Query: 504 AFAAGATASSPSLPLTALVIQD---HQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEA 560
F + T+L QD + V P + L
Sbjct: 325 TFYENC--ENEPFKCTSLYYQDVKHREAGQMVNPVEHILGT------------------T 364
Query: 561 RIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLA 620
I D+I L+F ISP AFFQ+NT +A LY D DT L D+CCGTGTI L+ A
Sbjct: 365 HITDTIQGLKFRISPLAFFQINTESANLLYQKAIDLVGPTKDTTLLDICCGTGTITLSFA 424
Query: 621 HRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYL 670
V+G+E+ A+ DA NA +NGI N +F ++D + S+++D L
Sbjct: 425 KHCRKVMGVEIVPDAIRDAEFNAMVNGITNSKFYTGNSDDFIKSMVRDAL 474
>gi|148665092|gb|EDK97508.1| HpaII tiny fragments locus 9c, isoform CRA_b [Mus musculus]
Length = 606
Score = 176 bits (445), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 124/371 (33%), Positives = 174/371 (46%), Gaps = 39/371 (10%)
Query: 297 VKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGG 356
V DVVTPL + Y+ QLE K+ ++L+KL + N LP +++ ++
Sbjct: 148 VTQIADVVTPLWTVPYTEQLEQKRLECERVLQKLAKEIGNT--NRALLPWLLLQRQQHNK 205
Query: 357 LPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVS 415
C LEG+ SP YRNKCEF VG + K TVG LG ++ G AV P D ++
Sbjct: 206 ACCPLEGVKPSPQQTEYRNKCEFLVGVGVDGKDNTVGCRLGKYKGGTCAVAAPFDTVHIP 265
Query: 416 EIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNI 475
E + FQEF++ + ++ +G W+QLTVR
Sbjct: 266 EATKQVVKAFQEFIRSTPYSAYDPETYTGHWKQLTVRTSSR------------------- 306
Query: 476 SEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPA 535
+ M IA V L F G +S GV+++
Sbjct: 307 GQAMAIAYFHPQKLSSEEVAGLKASLVCHFMEGPGKAS--------------GVTSLYFV 352
Query: 536 DAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGD 595
+ R P +G P E + + I + + L F ISP AFFQVNT AAE LY++ +
Sbjct: 353 EEGQR--KTPSQEGLPLE-HMAGDQCIQEDLLGLTFRISPHAFFQVNTPAAEVLYTVIQE 409
Query: 596 WADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVC 655
WA L + + DVCCGTGTIGL LA +V V+GIE+ AV DA NA N + N F C
Sbjct: 410 WAQLDGGSTVLDVCCGTGTIGLALAPKVKRVVGIELCQEAVEDARMNALTNELSNVEFHC 469
Query: 656 AKAEDVMGSLL 666
+AED++ L+
Sbjct: 470 GRAEDLVPGLV 480
>gi|116283517|gb|AAH27431.1| TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae) [Mus
musculus]
gi|116283883|gb|AAH38486.1| TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae) [Mus
musculus]
Length = 602
Score = 176 bits (445), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 124/371 (33%), Positives = 174/371 (46%), Gaps = 39/371 (10%)
Query: 297 VKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGG 356
V DVVTPL + Y+ QLE K+ ++L+KL + N LP +++ ++
Sbjct: 144 VTQIADVVTPLWTVPYTEQLEQKRLECERVLQKLAKEIGNT--NRALLPWLLLQRQQHNK 201
Query: 357 LPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVS 415
C LEG+ SP YRNKCEF VG + K TVG LG ++ G AV P D ++
Sbjct: 202 ACCPLEGVKPSPQQTEYRNKCEFLVGVGVDGKDNTVGCRLGKYKGGTCAVAAPFDTVHIP 261
Query: 416 EIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNI 475
E + FQEF++ + ++ +G W+QLTVR
Sbjct: 262 EATKQVVKAFQEFIRSTPYSAYDPETYTGHWKQLTVRTSSR------------------- 302
Query: 476 SEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPA 535
+ M IA V L F G +S GV+++
Sbjct: 303 GQAMAIAYFHPQKLSSEEVAGLKASLVCHFMEGPGKAS--------------GVTSLYFV 348
Query: 536 DAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGD 595
+ R P +G P E + + I + + L F ISP AFFQVNT AAE LY++ +
Sbjct: 349 EEGQR--KTPSQEGLPLE-HMAGDQCIQEDLLGLTFRISPHAFFQVNTPAAEVLYTVIQE 405
Query: 596 WADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVC 655
WA L + + DVCCGTGTIGL LA +V V+GIE+ AV DA NA N + N F C
Sbjct: 406 WAQLDGGSTVLDVCCGTGTIGLALAPKVKRVVGIELCQEAVEDARMNALTNELSNVEFHC 465
Query: 656 AKAEDVMGSLL 666
+AED++ L+
Sbjct: 466 GRAEDLVPGLV 476
>gi|124487421|ref|NP_001074469.1| tRNA (uracil-5-)-methyltransferase homolog A isoform 1 [Mus
musculus]
Length = 613
Score = 175 bits (444), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 124/371 (33%), Positives = 174/371 (46%), Gaps = 39/371 (10%)
Query: 297 VKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGG 356
V DVVTPL + Y+ QLE K+ ++L+KL + N LP +++ ++
Sbjct: 155 VTQIADVVTPLWTVPYTEQLEQKRLECERVLQKLAKEIGNT--NRALLPWLLLQRQQHNK 212
Query: 357 LPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVS 415
C LEG+ SP YRNKCEF VG + K TVG LG ++ G AV P D ++
Sbjct: 213 ACCPLEGVKPSPQQTEYRNKCEFLVGVGVDGKDNTVGCRLGKYKGGTCAVAAPFDTVHIP 272
Query: 416 EIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNI 475
E + FQEF++ + ++ +G W+QLTVR
Sbjct: 273 EATKQVVKAFQEFIRSTPYSAYDPETYTGHWKQLTVRTSSR------------------- 313
Query: 476 SEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPA 535
+ M IA V L F G +S GV+++
Sbjct: 314 GQAMAIAYFHPQKLSSEEVAGLKASLVCHFMEGPGKAS--------------GVTSLYFV 359
Query: 536 DAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGD 595
+ R P +G P E + + I + + L F ISP AFFQVNT AAE LY++ +
Sbjct: 360 EEGQR--KTPSQEGLPLE-HMAGDQCIQEDLLGLTFRISPHAFFQVNTPAAEVLYTVIQE 416
Query: 596 WADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVC 655
WA L + + DVCCGTGTIGL LA +V V+GIE+ AV DA NA N + N F C
Sbjct: 417 WAQLDGGSTVLDVCCGTGTIGLALAPKVKRVVGIELCQEAVEDARMNALTNELSNVEFHC 476
Query: 656 AKAEDVMGSLL 666
+AED++ L+
Sbjct: 477 GRAEDLVPGLV 487
>gi|198433704|ref|XP_002130635.1| PREDICTED: similar to HpaII tiny fragments locus 9c [Ciona
intestinalis]
Length = 587
Score = 175 bits (444), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 118/369 (31%), Positives = 178/369 (48%), Gaps = 47/369 (12%)
Query: 301 RDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCK 360
++ V P SY QL+ K++S+ L ++ + + W+M+ ++ G C
Sbjct: 156 KNTVIPWWKSSYEEQLKLKQSSMFSSLLEIRKKVSAVDNLDNEVFVWLMQQKKESGAFCP 215
Query: 361 LEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
++ IL SP V GYRNKC F+VG + + + VGF LG +R+ V VE P +V ++ +
Sbjct: 216 MDDILPSPCVGGYRNKCGFTVGKNSEDQAMVGFRLGRYRDQVCNVENPSCLIHVPDVMKQ 275
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
F +++Q+S L V+N + GFW+Q+TVR +EN M+
Sbjct: 276 IVECFTQYVQRSKLSVYNTHTHEGFWKQITVRTT--------LEN-----------SSMV 316
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
I + D + +E + + F T+ V D V +
Sbjct: 317 IITMCKQNLTDEKIQTELQSVIDHFE------------TSNVKVDTMLYEGVPTHRCNSK 364
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWA--- 597
+SI G + I++ + +L+F ISP AFFQ NT AAE LY GD
Sbjct: 365 EISIKTLTG---------DGVIYEKLFDLKFRISPDAFFQCNTKAAEVLYKCIGDLVKQA 415
Query: 598 -DLGPD---TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRF 653
D PD T L DVCCGTGTIGLTL+ V ++G+++ A+ DA +NA +N I N F
Sbjct: 416 IDETPDSKETALLDVCCGTGTIGLTLSSCVNRLVGVDICEQAIIDAVKNATLNNITNAEF 475
Query: 654 VCAKAEDVM 662
KAEDV+
Sbjct: 476 YVGKAEDVL 484
Score = 43.9 bits (102), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 750 NVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
N+VA+VDPPR GLH VIK++R +Q L+++
Sbjct: 498 NLVAVVDPPRCGLHAKVIKVIRQCPAIQYLIYV 530
>gi|281353795|gb|EFB29379.1| hypothetical protein PANDA_009403 [Ailuropoda melanoleuca]
Length = 631
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 156/519 (30%), Positives = 214/519 (41%), Gaps = 102/519 (19%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L ++PR ++++FL G+ K FV F S + A+ L G
Sbjct: 70 LQNVPRHASFSDVRRFLGRFGLQPHKTKLFGQPPCAFVTFRSAAERDKALRVLHGALWKG 129
Query: 230 KTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHED-GNGNDEGL 288
+ L V P++ PM A ED G +
Sbjct: 130 RPLSVRLARPKA------DPM----------------------ARKRRREDEGEPTTTCI 161
Query: 289 AGDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWI 348
A DVVTPL + Y+ QLE K+ Q+L+KL + N LP W+
Sbjct: 162 A------------DVVTPLWTVPYAEQLERKRLECEQVLQKLAKEI--GSTNRALLP-WL 206
Query: 349 MKSR-EIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVE 406
+ R + C LEG+ SP YRNKCEF VG + + TVG LG ++ G AV
Sbjct: 207 LSQRHKHNKACCPLEGVRPSPQQTEYRNKCEFLVGIGVDGEDNTVGCRLGKYKGGTCAVA 266
Query: 407 EPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENL 466
P D ++ + FQEF++ + +N SG W+QLTVR R
Sbjct: 267 APFDTVHIPGATKQVVKAFQEFIRSTPYSAYNPETYSGHWKQLTVRTSRR---------- 316
Query: 467 EVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDH 526
+ M I + LA+ F AG ++
Sbjct: 317 ---------GQAMAIVYFHPQKLGPEELAGLKASLAQHFMAGPGKAT------------- 354
Query: 527 QGVSNVAPADAPLRLLSIPKADGEPEESNDVVEAR-IHDSISNLRFCISPTAFFQVNTLA 585
GV+ + + R P +G P E V R IH+ + L F ISP AFFQVNTLA
Sbjct: 355 -GVTCLYFVEEGQR--KTPSQEGLPLE--HVAGDRCIHEDLLGLTFRISPHAFFQVNTLA 409
Query: 586 AEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLA------------------HRVGMVI 627
AE LY++ DWA L + + DVCCGTGTIGL LA RV V+
Sbjct: 410 AEVLYTVIQDWAQLDTGSTVLDVCCGTGTIGLALAPVSLWDGVGRHESVLSWLQRVKRVV 469
Query: 628 GIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
GIE+ AV DA NA N + N F C +AED++ +L+
Sbjct: 470 GIELCQEAVEDARVNARDNELTNVEFHCGRAEDLVPTLV 508
>gi|380794931|gb|AFE69341.1| tRNA (uracil-5-)-methyltransferase homolog isoform a, partial
[Macaca mulatta]
Length = 440
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 122/368 (33%), Positives = 175/368 (47%), Gaps = 43/368 (11%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
DVVTPL +SY QL+ K + ++L++L + NGV++ + KS LPC L
Sbjct: 22 DVVTPLWRLSYEEQLKVKFEAQKKILQRLESYIQML--NGVNVTTAVPKSE---SLPCLL 76
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
I+ SP++NGYRNK FSV P TVG+ LG +R+G + N+ E +
Sbjct: 77 HPIIPSPVINGYRNKSTFSVNRGPDGNPKTVGYYLGTWRDGNIVCVRSNNLKNIPEKHSQ 136
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
A ++ FL+QS L F G+WR+L VR M
Sbjct: 137 VAQYYEVFLRQSPLEPCLVFHEGGYWRELIVRTNSQ-------------------GHTMA 177
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
I ++ + E + + F G A+ LT+L Q+ ++ + +P +
Sbjct: 178 IITFHPQKLSQEELHVQKETVKEFFIRGPGAACD---LTSLYFQE-STMTRCSHQQSPYQ 233
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
LL GEP I + + +L+ ISP AFFQ+NT AE LY G+ +
Sbjct: 234 LLF-----GEP---------YIFEELLSLKIRISPDAFFQINTAGAEMLYRTVGELTGVN 279
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
DT+L D+CCGTG IGL+LA V+GIE+ AV DA A NGI N F +AE
Sbjct: 280 SDTILLDICCGTGVIGLSLAQHTSQVLGIELVEQAVEDARWTAAFNGITNSEFHTGRAEK 339
Query: 661 VMGSLLKD 668
++ LLK
Sbjct: 340 ILPGLLKS 347
>gi|66518990|ref|XP_396538.2| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A-like [Apis
mellifera]
Length = 568
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 155/526 (29%), Positives = 225/526 (42%), Gaps = 86/526 (16%)
Query: 160 GDQDVELSKCLVH-LPRKWHSDNLKKFLADHGILYKSAKKKKGMTVG--FVKFESVEQLK 216
D E K VH LP+ + KK L + L K + G +V F + E +
Sbjct: 20 ADFTSEKYKIEVHGLPKYYGIGEFKKLLNEKLDLQSCKIKPPKRSSGWLYVSFRNEESRQ 79
Query: 217 NAVEELEGISIGNKTL--KVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHAS 274
A+E L GI N L ++A P F K K E+A E
Sbjct: 80 KAIETLNGILWKNYKLSAQIAKPAPDPFIKK-----------KLEEENARKRLKVEEDDQ 128
Query: 275 SNGHEDGNGNDEGLAGDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNA 334
S ED KVK PL +M Y QLE K+ ++ +L + +
Sbjct: 129 SISIED---------------KVKLT---TIPLWNMPYPSQLELKQKEMSSILTTICKQM 170
Query: 335 RKACPNGVSLPEWI-MKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYS-LQAKPTVG 392
K L +W+ + + GLPC+L IL + YRNKCEF+VG S + K +G
Sbjct: 171 LKESKG--DLLDWLNCQKNKYQGLPCELLPILSIDTIKEYRNKCEFTVGKSDKEDKIVIG 228
Query: 393 FMLGNFREGVTAVEEPVD----CPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQ 448
F L + G TAV P+D PN +I K + +EF++ ++L ++ SG+WRQ
Sbjct: 229 FRLSTYASGSTAVG-PIDNLCHIPNKMKIVVK---VLEEFMKSTELTPFDPVDYSGYWRQ 284
Query: 449 LTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAG 508
+TVR S +M+I + ++ +L F G
Sbjct: 285 VTVRTTLS-------------------DHLMVIVGIHPQDLTSEKLDELKLQLKTFFEIG 325
Query: 509 ATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEA--RIHDSI 566
+ +T+L +Q ++ I DG+ EE+ + I + +
Sbjct: 326 KGVQAR---VTSLYLQ----------------IMKIKSIDGKDEENFHHISGTKYIEEKL 366
Query: 567 SNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMV 626
+++F ISP AFFQVNTL A+ LY D A DT L D+CCGTGTIGL + G V
Sbjct: 367 LDMKFRISPQAFFQVNTLGAQVLYKAAIDLAKPNVDTALLDICCGTGTIGLAFSKYCGEV 426
Query: 627 IGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
G+EM A+ DA N N I NC F KAED++ +++ P
Sbjct: 427 FGLEMIEDAIKDAKENVIANKISNCEFFVGKAEDILSPVIRRTTKP 472
>gi|91088207|ref|XP_973242.1| PREDICTED: similar to CG3808 CG3808-PA [Tribolium castaneum]
gi|270011827|gb|EFA08275.1| hypothetical protein TcasGA2_TC005909 [Tribolium castaneum]
Length = 586
Score = 173 bits (439), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 141/469 (30%), Positives = 211/469 (44%), Gaps = 72/469 (15%)
Query: 199 KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRSFDKNIKSPMTLSGNAKQ 258
K+ FV F S E A+E L G K L+ P SP L K+
Sbjct: 85 KRNSPYAFVCFRSDEDRNKAIETLSGFKWKGKPLQAIRAKP--------SPDPLVKKRKE 136
Query: 259 ASESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLKVKSARDVVTPLAHMSYSVQLEH 318
SE G + + E+ K+KS+ PL + Y QL+
Sbjct: 137 DSEE---GPNKKIKIDNRSQEE---------------KLKSS---TIPLWDVPYEEQLKT 175
Query: 319 KKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSRE-IGGLPCKLEGILGSPLVNGYRNKC 377
K+ +LK+L + P+ L EW+ K +E GLPC+L I + +GYRNKC
Sbjct: 176 KQEEARNILKRLGNELARQNPD---LREWLNKQKEKFDGLPCELLNIRYADECDGYRNKC 232
Query: 378 EFSVGYSLQAK-PTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
F+VG + K PTVGF +G++ G+T V ++ E +FQ++++ SDL V
Sbjct: 233 SFTVGIDEETKLPTVGFRIGSYVNGITGVGSIESLKHIPESMKLAVKLFQDYVRASDLQV 292
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
+N ++G +RQLT+R + ++ML+ + + +
Sbjct: 293 FNFEVHTGHFRQLTIRTAQ--------------------DQIMLVVGIHPQDLSEEKLKV 332
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESND 556
L F GA + +T+L Q + V +A D +DG D
Sbjct: 333 FKNSLIHYFTEGAGKEA---KITSLYYQ--KIVKKIAGED----------SDGSEHLWGD 377
Query: 557 VVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIG 616
I +++ L+F ISP AFFQ+NT AE LY + A D+ + DVCCGTGTIG
Sbjct: 378 ---THICETLLGLKFKISPEAFFQINTKGAEILYKSIIELASPTEDSTVLDVCCGTGTIG 434
Query: 617 LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
L A V+GIE+ A+ DA NA++N I+N F KAE+++GS+
Sbjct: 435 LCFAKNCKKVLGIEIVPQAIIDAKANAKLNEIENSEFFEGKAEEILGSV 483
>gi|195591421|ref|XP_002085439.1| GD12311 [Drosophila simulans]
gi|194197448|gb|EDX11024.1| GD12311 [Drosophila simulans]
Length = 605
Score = 173 bits (439), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 121/377 (32%), Positives = 179/377 (47%), Gaps = 50/377 (13%)
Query: 296 KVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIG 355
K ++A + PL+H++Y QL+ K ++ +L K T+ R+ P +
Sbjct: 156 KQRTAVEATCPLSHIAYDQQLKQKSEEMSALLAKYTQELRRVNPRAKPHLDKF------- 208
Query: 356 GLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVS 415
+ G+L SP VNGYRNK EF+VG + + VGF LG + +G V E D P++
Sbjct: 209 ----QFHGVLPSPTVNGYRNKNEFTVGKNSAGEVVVGFRLGCYSDGSVEVAEVADLPHLP 264
Query: 416 EIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNI 475
E A A FQ+ +++S +N N G +RQL VR + G
Sbjct: 265 EQAKWAARSFQDLVRKSKFLPFNPDGNVGHFRQLMVRCSSATG----------------- 307
Query: 476 SEVMLIAQVSSATF--DDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVA 533
E+ML+A + S+ D+ V E ++ K+F +P T+L QD V
Sbjct: 308 -ELMLVAGIYSSNLSEDEQV---ELKQELKSFYEELGKDAP-YKCTSLYYQD------VK 356
Query: 534 PADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLG 593
+A + + G I D+I L+F ISP AFFQ+NT A LY
Sbjct: 357 HREAGQTINPVEHISG---------STHITDTIQGLQFRISPLAFFQINTEGANVLYQKA 407
Query: 594 GDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRF 653
D DT + D+CCGTGTI L A V+G+E+ A+ DA NAE NGIKN +F
Sbjct: 408 IDLVAPTKDTTMLDICCGTGTITLAFAKHCKKVMGVEIVPDAIKDAEFNAEANGIKNAKF 467
Query: 654 VCAKAEDVMGSLLKDYL 670
A+D + S++++ L
Sbjct: 468 FTGNADDFIKSMVREAL 484
>gi|194873870|ref|XP_001973294.1| GG13433 [Drosophila erecta]
gi|190655077|gb|EDV52320.1| GG13433 [Drosophila erecta]
Length = 615
Score = 173 bits (439), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 120/390 (30%), Positives = 176/390 (45%), Gaps = 76/390 (19%)
Query: 296 KVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIG 355
K ++A + PL+H++Y QL+ K ++ +L K T+ RK P +
Sbjct: 156 KQRTAVEATCPLSHIAYEQQLKQKSEDMSALLAKYTQELRKVNPRAKPHLDKF------- 208
Query: 356 GLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVS 415
+ + +L SP VNGYRNK EF+VG + + VGF LG + +G V E D P++
Sbjct: 209 ----QFQEVLPSPTVNGYRNKNEFTVGKNSAGEVVVGFRLGCYSDGSVEVAEVADLPHLP 264
Query: 416 EIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNI 475
E A A FQ+ +++S +N N G +RQL VR + G
Sbjct: 265 EQAKWAARSFQDLVRKSRFLPFNPDGNVGHFRQLMVRCSSATG----------------- 307
Query: 476 SEVMLIAQVSSATFDD-------AVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQG 528
E+ML+A + S+ D + S +E LAK
Sbjct: 308 -ELMLVAGIYSSNLSDDEQGELKQELKSFYEELAK------------------------- 341
Query: 529 VSNVAPADAPLRLLSIPKADGEPEESNDVV--------EARIHDSISNLRFCISPTAFFQ 580
DAP + S+ D + E+ ++ I D+I L+F ISP AFFQ
Sbjct: 342 -------DAPYKCTSLYYQDVKHREAGQMINPVEHIWGSTHITDTIQGLQFRISPLAFFQ 394
Query: 581 VNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAH 640
+NT A LY D DT + D+CCGTGTI L A V+G+E+ A+ DA
Sbjct: 395 INTEGANVLYQKAIDLVAPTKDTTMLDICCGTGTITLAFAKHCRKVMGVEIVPDAIKDAE 454
Query: 641 RNAEINGIKNCRFVCAKAEDVMGSLLKDYL 670
NAE NGIKN +F A D + S++++ L
Sbjct: 455 FNAEANGIKNAKFFTGNANDFIKSMVREAL 484
>gi|109131524|ref|XP_001091317.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog isoform 4
[Macaca mulatta]
Length = 504
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 122/368 (33%), Positives = 175/368 (47%), Gaps = 43/368 (11%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
DVVTPL +SY QL+ K + ++L++L + NGV++ + KS LPC L
Sbjct: 86 DVVTPLWRLSYEEQLKVKFEAQKKILQRLESYIQML--NGVNVTTAVPKSES---LPCLL 140
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
I+ SP++NGYRNK FSV P TVG+ LG +R+G + N+ E +
Sbjct: 141 HPIIPSPVINGYRNKSTFSVNRGPDGNPKTVGYYLGTWRDGNIVCVRSNNLKNIPEKHSQ 200
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
A ++ FL+QS L F G+WR+L VR M
Sbjct: 201 VAQYYEVFLRQSPLEPCLVFHEGGYWRELIVRTNSQ-------------------GHTMA 241
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
I ++ + E + + F G A+ LT+L Q+ ++ + +P +
Sbjct: 242 IITFHPQKLSQEELHVQKETVKEFFIRGPGAACD---LTSLYFQE-STMTRCSHQQSPYQ 297
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
LL GEP I + + +L+ ISP AFFQ+NT AE LY G+ +
Sbjct: 298 LLF-----GEP---------YIFEELLSLKIRISPDAFFQINTAGAEMLYRTVGELTGVN 343
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
DT+L D+CCGTG IGL+LA V+GIE+ AV DA A NGI N F +AE
Sbjct: 344 SDTILLDICCGTGVIGLSLAQHTSQVLGIELVEQAVEDARWTAAFNGITNSEFHTGRAEK 403
Query: 661 VMGSLLKD 668
++ LLK
Sbjct: 404 ILPGLLKS 411
>gi|195377591|ref|XP_002047572.1| GJ13518 [Drosophila virilis]
gi|194154730|gb|EDW69914.1| GJ13518 [Drosophila virilis]
Length = 603
Score = 173 bits (438), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 119/382 (31%), Positives = 180/382 (47%), Gaps = 46/382 (12%)
Query: 289 AGDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWI 348
AG+ + ++A + PLA M Y QLE K +A +L+K T+ R+ N + P
Sbjct: 143 AGEIKPKRQRTAVEATCPLAEMPYEKQLEQKTEEMATLLRKYTQELRRL--NADAKPHLD 200
Query: 349 MKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEP 408
+ +G+L SP V+GYRNK EF+VG + + VGF LG++ +G V E
Sbjct: 201 ---------KFQFKGVLPSPTVDGYRNKNEFTVGKNSDGEIVVGFRLGSYSDGSVEVAEV 251
Query: 409 VDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEV 468
P++ A A FQ+ ++QS +N N G +RQL VR + G
Sbjct: 252 QQLPHLPAQAKWAAQSFQQLVRQSKFQPFNPVGNVGHFRQLMVRSSTATG---------- 301
Query: 469 NISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQG 528
E+ML+A + S+ + E + + F ++ + T+L QD
Sbjct: 302 --------ELMLVAGIYSSNLSE-TEQQELQTELRTFYEQPEQNN-THKCTSLYYQD--- 348
Query: 529 VSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEK 588
V +A + + G I D+I L+F +SP AFFQ+NT A
Sbjct: 349 ---VKHREAGQMVNPVTHLSGS---------THITDTIQGLQFRVSPLAFFQINTAGANV 396
Query: 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI 648
LY D A DT + D+CCGTGTI L A V+G+E+ A+ DA NA+ N I
Sbjct: 397 LYQQAIDLAAPSRDTTMLDICCGTGTIALAFAKHCKQVLGVEIVPDAIKDAEYNAQENDI 456
Query: 649 KNCRFVCAKAEDVMGSLLKDYL 670
KNC+F A+D + S++++ L
Sbjct: 457 KNCKFFAGNADDFIKSMVREAL 478
>gi|402910788|ref|XP_003918033.1| PREDICTED: tRNA (uracil(54)-C(5))-methyltransferase homolog [Papio
anubis]
Length = 504
Score = 172 bits (437), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 122/368 (33%), Positives = 175/368 (47%), Gaps = 43/368 (11%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
DVVTPL +SY QL+ K + ++L++L + NGV++ + KS LPC L
Sbjct: 86 DVVTPLWRLSYEEQLKVKFEAQKKILQRLESYIQML--NGVNVTTAVPKSES---LPCLL 140
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
I+ SP++NGYRNK FSV P TVG+ LG +R+G + N+ E +
Sbjct: 141 HPIIPSPVINGYRNKSTFSVNRGPDGNPKTVGYYLGTWRDGNIVCVRSNNLKNIPEKHSQ 200
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
A ++ FL+QS L F G+WR+L VR M
Sbjct: 201 VAQYYEVFLRQSPLEPCLVFHEGGYWRELIVRTNSQ-------------------GHTMA 241
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
I ++ + E + + F G A+ LT+L Q+ ++ + +P +
Sbjct: 242 IITFHPQKLSQEELHVQKETVKEFFIRGPGAACD---LTSLYFQE-STMTRCSHQQSPYQ 297
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
LL GEP I + + +L+ ISP AFFQ+NT AE LY G+ +
Sbjct: 298 LLF-----GEP---------YIFEELLSLKIRISPDAFFQINTAGAEMLYRTVGELTGVN 343
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
DT+L D+CCGTG IGL+LA V+GIE+ AV DA A NGI N F +AE
Sbjct: 344 SDTILLDICCGTGVIGLSLAQHTSQVLGIELVEQAVEDARWTAAFNGITNSEFHTGRAEK 403
Query: 661 VMGSLLKD 668
++ LLK
Sbjct: 404 ILPGLLKS 411
>gi|10434333|dbj|BAB14223.1| unnamed protein product [Homo sapiens]
Length = 504
Score = 172 bits (437), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 126/371 (33%), Positives = 179/371 (48%), Gaps = 49/371 (13%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
DVVTPL +SY QL+ K + ++L++L + NGVS+ + KS L C L
Sbjct: 86 DVVTPLWRLSYEEQLKVKFAAQKKILQRLESYIQML--NGVSVTTAVPKSER---LSCLL 140
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
I+ SP++NGYRNK FSV P TVGF LG +R+G + N+ E +
Sbjct: 141 HPIIPSPVINGYRNKSTFSVNRGPDGNPKTVGFYLGTWRDGNVVCVQSNHLKNIPEKHSQ 200
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVR---EGRSPGKPLDVENLEVNISEVNISE 477
A ++ FL+QS L F G+WR+LTVR +GR+
Sbjct: 201 VAQYYEVFLRQSPLEPCLVFHEGGYWRELTVRTNSQGRT--------------------- 239
Query: 478 VMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADA 537
M I ++ + E + + F G A+ LT+L Q+ ++ + +
Sbjct: 240 -MAIITFHPQKLSQEELHVQKEIVKEFFIRGPGAACG---LTSLYFQE-STMTRCSHQQS 294
Query: 538 PLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWA 597
P +LL GEP I + + +L+ ISP AFFQ+NT AE LY G+
Sbjct: 295 PYQLLF-----GEP---------YIFEELLSLKIRISPDAFFQINTAGAEMLYRTVGELT 340
Query: 598 DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAK 657
+ DT+L D+CCGTG IGL+LA V+GIE+ AV DA A NGI N F +
Sbjct: 341 GVNSDTILLDICCGTGVIGLSLAQHTSRVLGIELLEQAVEDARWTAAFNGITNSEFHTGQ 400
Query: 658 AEDVMGSLLKD 668
AE ++ LLK
Sbjct: 401 AEKILPGLLKS 411
>gi|332254754|ref|XP_003276497.1| PREDICTED: tRNA (uracil(54)-C(5))-methyltransferase homolog isoform
1 [Nomascus leucogenys]
gi|332254756|ref|XP_003276498.1| PREDICTED: tRNA (uracil(54)-C(5))-methyltransferase homolog isoform
2 [Nomascus leucogenys]
gi|332254758|ref|XP_003276499.1| PREDICTED: tRNA (uracil(54)-C(5))-methyltransferase homolog isoform
3 [Nomascus leucogenys]
Length = 504
Score = 172 bits (437), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 124/368 (33%), Positives = 175/368 (47%), Gaps = 43/368 (11%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
DVVTPL +SY QL+ K + ++L++L + NGVS+ + S LPC L
Sbjct: 86 DVVTPLWRLSYEEQLKVKFAAQKKILQRLESYIQML--NGVSVTTAVPISER---LPCLL 140
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
I+ SP++NGYRNK FSV P TVGF LG +R+G + N+ E +
Sbjct: 141 HPIIPSPVINGYRNKSTFSVNRGPDGNPKTVGFYLGTWRDGNIVCVQSNHLKNIPEKHSQ 200
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
A ++ FL+QS L F G+WR+LTVR M
Sbjct: 201 VAQYYEVFLRQSPLEPCLVFHEGGYWRELTVRTNSQ-------------------GHTMA 241
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
I ++ + E + + F G A+ LT+L Q+ ++ + +P +
Sbjct: 242 IIIFHPQKLSQEELHVQKETVKEFFIRGPGAACD---LTSLYFQE-STMTRCSHQQSPYQ 297
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
LL GEP I + + +L+ ISP AFFQ+NT AE LY G+ +
Sbjct: 298 LLF-----GEP---------YIFEELLSLKIRISPDAFFQINTAGAEMLYRTVGELTGVN 343
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
DT+L D+CCGTG IGL+LA V+GIE+ AV DA A NGI N F +AE
Sbjct: 344 SDTILLDICCGTGVIGLSLAQHTSRVLGIELVEQAVEDARWTAAFNGITNSEFHTGQAEK 403
Query: 661 VMGSLLKD 668
++ LLK
Sbjct: 404 ILPGLLKS 411
>gi|397478215|ref|XP_003810448.1| PREDICTED: tRNA (uracil(54)-C(5))-methyltransferase homolog isoform
1 [Pan paniscus]
gi|397478217|ref|XP_003810449.1| PREDICTED: tRNA (uracil(54)-C(5))-methyltransferase homolog isoform
2 [Pan paniscus]
gi|397478219|ref|XP_003810450.1| PREDICTED: tRNA (uracil(54)-C(5))-methyltransferase homolog isoform
3 [Pan paniscus]
Length = 504
Score = 172 bits (437), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 124/368 (33%), Positives = 175/368 (47%), Gaps = 43/368 (11%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
DVVTPL +SY QL+ K + ++L++L + NGVS+ + KS L C L
Sbjct: 86 DVVTPLWRLSYEEQLKVKFAAQKKILQRLESYIQML--NGVSVTTAVPKSER---LACLL 140
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
I+ SP++NGYRNK FSV P TVGF LG +R+G + N+ E +
Sbjct: 141 HPIIPSPVINGYRNKSTFSVNRGPDGNPKTVGFYLGTWRDGNVVCVQSNHLKNIPEKHSQ 200
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
A ++ FL+QS L F G+WR+LTVR M
Sbjct: 201 VAQYYEVFLRQSPLEPCLVFHEGGYWRELTVRTNSQ-------------------GHTMA 241
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
I ++ + E + + F G A+ LT+L Q+ ++ + +P +
Sbjct: 242 IITFHPQKLSQEELHVQKEIVKEFFIRGPGAACG---LTSLYFQE-STMTRCSHQQSPYQ 297
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
LL GEP I + + +L+ ISP AFFQ+NT AE LY G+ +
Sbjct: 298 LLF-----GEP---------YIFEELLSLKIRISPDAFFQINTAGAEMLYRTVGELTGVN 343
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
DT+L D+CCGTG IGL+LA V+GIE+ AV DA A NGI N F +AE
Sbjct: 344 SDTILLDICCGTGVIGLSLAQHTSRVLGIELVEQAVEDARWTAAFNGITNSEFHTGQAEK 403
Query: 661 VMGSLLKD 668
++ LLK
Sbjct: 404 ILPGLLKS 411
>gi|332861165|ref|XP_521176.3| PREDICTED: tRNA (uracil(54)-C(5))-methyltransferase homolog isoform
3 [Pan troglodytes]
gi|332861167|ref|XP_003317598.1| PREDICTED: tRNA (uracil(54)-C(5))-methyltransferase homolog isoform
1 [Pan troglodytes]
gi|332861169|ref|XP_003317599.1| PREDICTED: tRNA (uracil(54)-C(5))-methyltransferase homolog isoform
2 [Pan troglodytes]
gi|410215758|gb|JAA05098.1| TRM2 tRNA methyltransferase 2 homolog B [Pan troglodytes]
gi|410215760|gb|JAA05099.1| TRM2 tRNA methyltransferase 2 homolog B [Pan troglodytes]
gi|410262174|gb|JAA19053.1| TRM2 tRNA methyltransferase 2 homolog B [Pan troglodytes]
gi|410262176|gb|JAA19054.1| TRM2 tRNA methyltransferase 2 homolog B [Pan troglodytes]
gi|410288436|gb|JAA22818.1| TRM2 tRNA methyltransferase 2 homolog B [Pan troglodytes]
gi|410348586|gb|JAA40897.1| TRM2 tRNA methyltransferase 2 homolog B [Pan troglodytes]
gi|410348588|gb|JAA40898.1| TRM2 tRNA methyltransferase 2 homolog B [Pan troglodytes]
Length = 504
Score = 172 bits (437), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 124/368 (33%), Positives = 175/368 (47%), Gaps = 43/368 (11%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
DVVTPL +SY QL+ K + ++L++L + NGVS+ + KS L C L
Sbjct: 86 DVVTPLWRLSYEEQLKVKFAAQKKILQRLESYIQML--NGVSVTTAVPKSER---LSCLL 140
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
I+ SP++NGYRNK FSV P TVGF LG +R+G + N+ E +
Sbjct: 141 HPIIPSPVINGYRNKSTFSVNRGPDGNPKTVGFYLGTWRDGNVVCVQSNHLKNIPEKHSQ 200
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
A ++ FL+QS L F G+WR+LTVR M
Sbjct: 201 VAQYYEVFLRQSPLEPCLVFHEGGYWRELTVRTNSQ-------------------GHTMA 241
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
I ++ + E + + F G A+ LT+L Q+ ++ + +P +
Sbjct: 242 IITFHPQKLSQEELHVQKEIVKEFFIRGPGAACG---LTSLYFQE-STMTRCSHQQSPYQ 297
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
LL GEP I + + +L+ ISP AFFQ+NT AE LY G+ +
Sbjct: 298 LLF-----GEP---------YIFEELLSLKIRISPDAFFQINTAGAEMLYRTVGELTGVN 343
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
DT+L D+CCGTG IGL+LA V+GIE+ AV DA A NGI N F +AE
Sbjct: 344 SDTILLDICCGTGVIGLSLAQHTSRVLGIELVEQAVEDARWTAAFNGITNSEFHTGQAEK 403
Query: 661 VMGSLLKD 668
++ LLK
Sbjct: 404 ILPGLLKS 411
>gi|14043085|gb|AAH07526.1| TRMT2B protein [Homo sapiens]
Length = 494
Score = 172 bits (436), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 124/368 (33%), Positives = 175/368 (47%), Gaps = 43/368 (11%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
DVVTPL +SY QL+ K + ++L++L + NGVS+ + KS L C L
Sbjct: 86 DVVTPLWRLSYEEQLKVKFAAQKKILQRLESYIQML--NGVSVTTAVPKSER---LSCLL 140
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
I+ SP++NGYRNK FSV P TVGF LG +R+G + N+ E +
Sbjct: 141 HPIIPSPVINGYRNKSTFSVNRGPDGNPKTVGFYLGTWRDGNVVCVQSNHLKNIPEKHSQ 200
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
A ++ FL+QS L F G+WR+LTVR M
Sbjct: 201 VAQYYEVFLRQSPLEPCLVFHEGGYWRELTVRTNSQ-------------------GHTMA 241
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
I ++ + E + + F G A+ LT+L Q+ ++ + +P +
Sbjct: 242 IITFHPQKLSQEELHVQKEIVKEFFIRGPGAACG---LTSLYFQE-STMTRCSHQQSPYQ 297
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
LL GEP I + + +L+ ISP AFFQ+NT AE LY G+ +
Sbjct: 298 LLF-----GEP---------YIFEELLSLKIRISPDAFFQINTAGAEMLYRTVGELTGVN 343
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
DT+L D+CCGTG IGL+LA V+GIE+ AV DA A NGI N F +AE
Sbjct: 344 SDTILLDICCGTGVIGLSLAQHTSRVLGIELLEQAVEDARWTAAFNGITNSEFHTGQAEK 403
Query: 661 VMGSLLKD 668
++ LLK
Sbjct: 404 ILPGLLKS 411
>gi|20149688|ref|NP_079193.2| tRNA (uracil(54)-C(5))-methyltransferase homolog isoform a [Homo
sapiens]
gi|269784676|ref|NP_001161442.1| tRNA (uracil(54)-C(5))-methyltransferase homolog isoform a [Homo
sapiens]
gi|269784680|ref|NP_001161444.1| tRNA (uracil(54)-C(5))-methyltransferase homolog isoform a [Homo
sapiens]
gi|74762656|sp|Q96GJ1.1|TRM2_HUMAN RecName: Full=tRNA (uracil(54)-C(5))-methyltransferase homolog;
AltName: Full=TRM2 homolog
gi|14495658|gb|AAH09437.1| TRMT2B protein [Homo sapiens]
gi|18042937|gb|AAH20116.1| TRMT2B protein [Homo sapiens]
gi|34783456|gb|AAH34272.1| TRM2 tRNA methyltransferase 2 homolog B (S. cerevisiae) [Homo
sapiens]
gi|119623236|gb|EAX02831.1| chromosome X open reading frame 34, isoform CRA_a [Homo sapiens]
gi|119623241|gb|EAX02836.1| chromosome X open reading frame 34, isoform CRA_a [Homo sapiens]
gi|119623243|gb|EAX02838.1| chromosome X open reading frame 34, isoform CRA_a [Homo sapiens]
Length = 504
Score = 172 bits (436), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 124/368 (33%), Positives = 175/368 (47%), Gaps = 43/368 (11%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
DVVTPL +SY QL+ K + ++L++L + NGVS+ + KS L C L
Sbjct: 86 DVVTPLWRLSYEEQLKVKFAAQKKILQRLESYIQML--NGVSVTTAVPKSER---LSCLL 140
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
I+ SP++NGYRNK FSV P TVGF LG +R+G + N+ E +
Sbjct: 141 HPIIPSPVINGYRNKSTFSVNRGPDGNPKTVGFYLGTWRDGNVVCVQSNHLKNIPEKHSQ 200
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
A ++ FL+QS L F G+WR+LTVR M
Sbjct: 201 VAQYYEVFLRQSPLEPCLVFHEGGYWRELTVRTNSQ-------------------GHTMA 241
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
I ++ + E + + F G A+ LT+L Q+ ++ + +P +
Sbjct: 242 IITFHPQKLSQEELHVQKEIVKEFFIRGPGAACG---LTSLYFQE-STMTRCSHQQSPYQ 297
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
LL GEP I + + +L+ ISP AFFQ+NT AE LY G+ +
Sbjct: 298 LLF-----GEP---------YIFEELLSLKIRISPDAFFQINTAGAEMLYRTVGELTGVN 343
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
DT+L D+CCGTG IGL+LA V+GIE+ AV DA A NGI N F +AE
Sbjct: 344 SDTILLDICCGTGVIGLSLAQHTSRVLGIELLEQAVEDARWTAAFNGITNSEFHTGQAEK 403
Query: 661 VMGSLLKD 668
++ LLK
Sbjct: 404 ILPGLLKS 411
>gi|189055144|dbj|BAG38128.1| unnamed protein product [Homo sapiens]
Length = 504
Score = 172 bits (435), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 124/368 (33%), Positives = 175/368 (47%), Gaps = 43/368 (11%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
DVVTPL +SY QL+ K + ++L++L + NGVS+ + KS L C L
Sbjct: 86 DVVTPLWRLSYEEQLKVKFAAQKKILQRLESYIQML--NGVSVTTAVPKSER---LSCLL 140
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
I+ SP++NGYRNK FSV P TVGF LG +R+G + N+ E +
Sbjct: 141 HPIIPSPVINGYRNKSTFSVNRGPDGNPKTVGFYLGTWRDGNVVCVQSNHLKNIPEKHSQ 200
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
A ++ FL+QS L F G+WR+LTVR M
Sbjct: 201 VAQYYEVFLRQSPLEPCLVFHEGGYWRELTVRTNSQ-------------------GHTMA 241
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
I ++ + E + + F G A+ LT+L Q+ ++ + +P +
Sbjct: 242 IITFHPQKLSQEELHVQKEIVKEFFIRGPGAACG---LTSLYFQE-STMARCSHQQSPYQ 297
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
LL GEP I + + +L+ ISP AFFQ+NT AE LY G+ +
Sbjct: 298 LLF-----GEP---------YIFEELLSLKIRISPDAFFQINTAGAEMLYRTVGELTGVN 343
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
DT+L D+CCGTG IGL+LA V+GIE+ AV DA A NGI N F +AE
Sbjct: 344 SDTILLDICCGTGVIGLSLAQHTSRVLGIELLEQAVEDARWTAAFNGITNSEFHTGQAEK 403
Query: 661 VMGSLLKD 668
++ LLK
Sbjct: 404 ILPGLLKS 411
>gi|197101097|ref|NP_001124606.1| tRNA (uracil(54)-C(5))-methyltransferase homolog [Pongo abelii]
gi|75071000|sp|Q5RFM7.1|TRM2_PONAB RecName: Full=tRNA (uracil(54)-C(5))-methyltransferase homolog;
AltName: Full=TRM2 homolog
gi|55725126|emb|CAH89430.1| hypothetical protein [Pongo abelii]
Length = 486
Score = 172 bits (435), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 127/368 (34%), Positives = 179/368 (48%), Gaps = 43/368 (11%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
DVVTPL +SY QL+ K + ++L++L + NGVS+ + KS L C L
Sbjct: 68 DVVTPLWRLSYEEQLKVKFAAQKKILQRLESYIQML--NGVSVTTAVPKSER---LSCLL 122
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
I+ SP++NGYRNK FSV P TVGF LG +R+G + N+ E +
Sbjct: 123 HPIIPSPVINGYRNKSTFSVNRGPDGNPKTVGFYLGTWRDGNMVCVQSNHLKNIPEKHSQ 182
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
A ++ FL+QS L F G+WR+LTVR S G + + + N+S+
Sbjct: 183 VAQYYEVFLRQSPLEPCLVFHEGGYWRELTVRTN-SQGHTMAI----ITFHPQNLSQEEF 237
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
Q +V F R GA LT+L Q+ ++ + +P +
Sbjct: 238 HVQ-------KEIVKEFFIR-----GPGAACD-----LTSLYFQE-STMTRCSHQQSPYQ 279
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
LL GEP I + + +L+ ISP AFFQ+NT AE LY G+ +
Sbjct: 280 LLF-----GEP---------YIFEELLSLKIRISPDAFFQINTAGAEMLYRTVGELTGVN 325
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
DT+L D+CCGTG IGL+L+ V+GIE+ AV DA A NGI N F +AE
Sbjct: 326 SDTILLDICCGTGVIGLSLSQHTSRVLGIELVEQAVEDARWTAAFNGITNSEFHTGRAEK 385
Query: 661 VMGSLLKD 668
++ LLK
Sbjct: 386 ILPGLLKS 393
>gi|195352293|ref|XP_002042647.1| GM14902 [Drosophila sechellia]
gi|194124531|gb|EDW46574.1| GM14902 [Drosophila sechellia]
Length = 615
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 119/375 (31%), Positives = 176/375 (46%), Gaps = 46/375 (12%)
Query: 296 KVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIG 355
K ++A + PL+H++Y QL+ K ++ +L K T+ RK P +
Sbjct: 156 KQRTAVEATCPLSHIAYDQQLKQKSEEMSALLAKYTQELRKVNPRAKPHLDKF------- 208
Query: 356 GLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVS 415
+ +L SP VNGYRNK EF+VG + + VGF LG + +G V E D P++
Sbjct: 209 ----QFHEVLPSPTVNGYRNKNEFTVGKNSAGEVVVGFRLGCYSDGSVEVAEVADLPHLP 264
Query: 416 EIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNI 475
E A A FQ+ +++S +N N G +RQL VR + G
Sbjct: 265 EQAKWAARSFQDLVRKSKFLPFNPDGNVGHFRQLMVRCSSATG----------------- 307
Query: 476 SEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPA 535
E+ML+A + S+ + +E + K+F +P T+L QD V
Sbjct: 308 -ELMLVAGIYSSNLSED-EQAELKEELKSFYEELGKDAP-YKCTSLYYQD------VKHR 358
Query: 536 DAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGD 595
+A + + G I D+I L+F ISP AFFQ+NT A LY D
Sbjct: 359 EAGQTINPVEHISG---------STHITDTIQGLQFRISPLAFFQINTEGANVLYQKAID 409
Query: 596 WADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVC 655
DT + D+CCGTGTI L A V+G+E+ A+ DA NAE NGIKN +F
Sbjct: 410 LVAPTKDTTMLDICCGTGTITLAFAKHCKKVMGVEIVPDAIKDAEFNAEANGIKNAKFFT 469
Query: 656 AKAEDVMGSLLKDYL 670
A+D + S++++ L
Sbjct: 470 GNADDFIKSMVREAL 484
>gi|24666579|ref|NP_649083.2| CG3808 [Drosophila melanogaster]
gi|23093152|gb|AAF49200.3| CG3808 [Drosophila melanogaster]
Length = 615
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 119/385 (30%), Positives = 181/385 (47%), Gaps = 66/385 (17%)
Query: 296 KVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIG 355
K ++A + PL+H++Y Q++ K ++ +L K T+ RK P +
Sbjct: 156 KQRTAVEATCPLSHIAYDQQIKQKSEEMSALLAKYTQELRKVNPRAKPHLDKF------- 208
Query: 356 GLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVS 415
+ +L SP VNGYRNK EF+VG + + VGF LG + +G V E D P++
Sbjct: 209 ----QFHEVLPSPTVNGYRNKNEFTVGKNSVGEVVVGFRLGCYSDGSVEVAEVADLPHLP 264
Query: 416 EIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNI 475
E A A FQ+ +++S +N N G +RQL VR + G
Sbjct: 265 EQAKWAARSFQDLVRKSKFLPFNPDGNIGHFRQLMVRCSSATG----------------- 307
Query: 476 SEVMLIAQVSSATF--DDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVA 533
E+ML+A + S+ D+ V E ++ K+F ++ ++N
Sbjct: 308 -ELMLVAGIYSSNLSEDEQV---ELKQELKSF--------------------YEDLAN-- 341
Query: 534 PADAPLRLLSIPKADGEPEESNDVV--------EARIHDSISNLRFCISPTAFFQVNTLA 585
DAP + S+ D + E+ + I D+I L+F ISP AFFQ+NT
Sbjct: 342 --DAPYKCSSLYYQDVKHREAGQTINPVEHISGSTHITDTIQGLQFRISPLAFFQINTEG 399
Query: 586 AEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEI 645
A LY D DT + D+CCGTGTI L A V+G+E+ A+ DA NAE
Sbjct: 400 ANVLYQKAIDLVAPTKDTTMLDICCGTGTITLAFAKHCKKVMGVEIVPDAIKDAEFNAEA 459
Query: 646 NGIKNCRFVCAKAEDVMGSLLKDYL 670
NGIKN +F A+D + S++++ L
Sbjct: 460 NGIKNAKFFTGNADDFIKSMVREAL 484
>gi|441618617|ref|XP_004088522.1| PREDICTED: LOW QUALITY PROTEIN: tRNA (uracil-5-)-methyltransferase
homolog A [Nomascus leucogenys]
Length = 617
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 153/502 (30%), Positives = 221/502 (44%), Gaps = 93/502 (18%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L ++PR ++++FL G+ K FV F S + A+ L G
Sbjct: 77 LQNVPRHASFSDVRRFLGRFGLQPHKTKLFGQPPCAFVTFRSAAERDKALRVLHGALWKG 136
Query: 230 KTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLA 289
+ L V P++ PM + +Q ES P
Sbjct: 137 RPLSVRLARPKA------DPM--ARRRRQEGESEPP------------------------ 164
Query: 290 GDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIM 349
V DVVTPL + Y+ QLE K+ Q+L+KL + N LP W++
Sbjct: 165 -------VTRVADVVTPLWTVPYAEQLERKQLECEQVLQKLAKEIGST--NRALLP-WLL 214
Query: 350 KSR-EIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEE 407
+ R + C LEG+ SP YRNKCEF VG + + TVG LG ++ G AV
Sbjct: 215 EQRHKHNKACCPLEGVRPSPQQTEYRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAA 274
Query: 408 PVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGF--WRQLTVREGRSPGKPLDVEN 465
P D ++ E + FQEF++ PV + W L+ +G N
Sbjct: 275 PFDTVHIPEATKQVVKAFQEFIRXG--PVTGLLGSPMVPSWVGLSTADG----------N 322
Query: 466 LEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQD 525
L + ++ + E +A++ ++ LA+ F AG +S
Sbjct: 323 LHHLLQKLGLEE---LAELKAS-------------LAQHFTAGPGRAS------------ 354
Query: 526 HQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEAR-IHDSISNLRFCISPTAFFQVNTL 584
GV+ + + R P +G P E V R IH+ + L F ISP AFFQVNT
Sbjct: 355 --GVTCLYFVEEGQR--KTPSQEGLPLE--HVAGDRCIHEDLLGLTFRISPHAFFQVNTP 408
Query: 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAE 644
AAE LY++ DWA L + + DVCCGTGTIGL LA +V VIG+E+ AV DA NA+
Sbjct: 409 AAEVLYTVIQDWAQLDAGSTVLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDARVNAQ 468
Query: 645 INGIKNCRFVCAKAEDVMGSLL 666
N + N F C +AED++ +L+
Sbjct: 469 DNELSNVEFHCGRAEDLVPTLV 490
>gi|426396671|ref|XP_004064554.1| PREDICTED: tRNA (uracil(54)-C(5))-methyltransferase homolog
[Gorilla gorilla gorilla]
Length = 504
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 123/368 (33%), Positives = 175/368 (47%), Gaps = 43/368 (11%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
DVVTPL +SY QL+ K + ++L++L + +GVS+ + KS L C L
Sbjct: 86 DVVTPLWRLSYEEQLKVKFAAQKKILQRLESYIQML--SGVSVTTAVPKSER---LSCLL 140
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
I+ SP++NGYRNK FSV P TVGF LG +R+G + N+ E +
Sbjct: 141 HPIIPSPVINGYRNKSTFSVNRGPDGNPKTVGFYLGTWRDGNVVCVQSNHLKNIPEKHSQ 200
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
A ++ FL+QS L F G+WR+LTVR M
Sbjct: 201 VAQYYEVFLRQSPLEPCLVFHEGGYWRELTVRTNSQ-------------------GHTMA 241
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
I ++ + E + + F G A+ LT+L Q+ ++ + +P +
Sbjct: 242 IITFHPQKLSQEELHVQKEIVKEFFIRGPGAACG---LTSLYFQE-STMTRCSHQQSPYQ 297
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
LL GEP I + + +L+ ISP AFFQ+NT AE LY G+ +
Sbjct: 298 LLF-----GEP---------YIFEELLSLKIRISPDAFFQINTAGAEMLYRTVGELTGVN 343
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
DT+L D+CCGTG IGL+LA V+GIE+ AV DA A NGI N F +AE
Sbjct: 344 SDTILLDICCGTGVIGLSLAQHTSRVLGIELVEQAVEDARWTAAFNGITNSEFHTGQAEK 403
Query: 661 VMGSLLKD 668
++ LLK
Sbjct: 404 ILPGLLKS 411
>gi|340721951|ref|XP_003399376.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A-like
[Bombus terrestris]
Length = 570
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 153/527 (29%), Positives = 226/527 (42%), Gaps = 88/527 (16%)
Query: 160 GDQDVELSKCLVH-LPRKWHSDNLKKFLADHGILYKSAKKKKGMTVG--FVKFESVEQLK 216
D E K VH LP+ + KK L + L K + G +V F + E +
Sbjct: 20 ADFTSEKYKIEVHGLPKYYGIGEFKKLLNEKLELQSCKIKPPKRSSGWLYVSFRNEENRR 79
Query: 217 NAVEELEGISIGNKTL--KVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHAS 274
A+E L GI N TL ++A P F K
Sbjct: 80 KAIEILNGILWKNCTLSAQIAKPAPDPFVKR----------------------------- 110
Query: 275 SNGHEDGNGNDEGLAGDGSGLKVKSARDVVT-PLAHMSYSVQLEHKKNSIAQMLKKLTRN 333
E+ L D + ++ + T PL M Y QLE K+ ++ +L + +
Sbjct: 111 -RLEEETTKKRLKLDKDDQNISIEDKVKLTTIPLWEMPYPSQLELKQKEMSLILSTICKQ 169
Query: 334 ARKACPNGVSLPEWIMKSR-EIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTV- 391
K L EW+ + + GLPC+L IL + + YRNKCEF+VG S + V
Sbjct: 170 MLKESKG--DLLEWLNHQKTKYHGLPCELLPILSTDTITEYRNKCEFTVGKSEKENEVVI 227
Query: 392 GFMLGNFREGVTAVEEPVD----CPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWR 447
GF L ++ G TAV P+D PN ++ K + +EF++ ++L ++ +SG+WR
Sbjct: 228 GFRLSSYASGSTAVG-PIDNLCHIPNTMKVVVK---VLEEFIKNTELKPFDPVDHSGYWR 283
Query: 448 QLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAA 507
Q+TVR + V ++S + E+ Q+ TF FE
Sbjct: 284 QVTVRSTLCNDLMVIVGMHPQDLSSEKLGEL----QLQLKTF--------FE-------- 323
Query: 508 GATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEA--RIHDS 565
T + +T+L +Q ++ + DG+ E + + I +
Sbjct: 324 --TGNGVQARVTSLYLQ----------------IMKLKSIDGKSENNFYHISGTKYIEEM 365
Query: 566 ISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGM 625
+ ++F ISP AFFQVNTL AE LY D A DT L D+CCGTGTIGL + G
Sbjct: 366 LLGMKFRISPQAFFQVNTLGAEVLYKAAIDLAKPTVDTALLDICCGTGTIGLAFSKYCGE 425
Query: 626 VIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
V GIEM A+ DA N N + NC F KAEDV+ +++ P
Sbjct: 426 VFGIEMIEDAIKDAKENVVANEVSNCEFFVGKAEDVLSPVIRRTTKP 472
>gi|16769886|gb|AAL29162.1| SD08036p [Drosophila melanogaster]
Length = 615
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 120/390 (30%), Positives = 177/390 (45%), Gaps = 76/390 (19%)
Query: 296 KVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIG 355
K ++A + PL+H++Y Q++ K ++ +L K T+ RK P +
Sbjct: 156 KQRTAVEATCPLSHIAYDQQIKQKSEEMSALLAKYTQELRKVNPRAKPHLDKF------- 208
Query: 356 GLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVS 415
+ +L SP VNGYRNK EF+VG + + VGF LG + +G V E D P++
Sbjct: 209 ----QFHEVLPSPTVNGYRNKNEFTVGKNSVGEVVVGFRLGCYSDGSVEVAEVADLPHLP 264
Query: 416 EIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNI 475
E A A FQ+ +++S +N N G +RQL VR + G
Sbjct: 265 EQAKWAARSFQDLVRKSKFLPFNPDGNIGHFRQLMVRCSSATG----------------- 307
Query: 476 SEVMLIAQVSSATF--DDAV-----VNSEFERLAKAFAAGATASSPSLPLTALVIQDHQG 528
E+ML+A + S+ D+ V + S +E LAK
Sbjct: 308 -ELMLVAGIYSSNLSEDEQVELKQELKSFYEDLAK------------------------- 341
Query: 529 VSNVAPADAPLRLLSIPKADGEPEESNDVV--------EARIHDSISNLRFCISPTAFFQ 580
DAP + S+ D + E+ + I D+I L+F ISP AFFQ
Sbjct: 342 -------DAPYKCSSLYYQDVKHREAGQTINPVEHISGSTHITDTIQGLQFRISPLAFFQ 394
Query: 581 VNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAH 640
+NT A LY D DT + D+CCGTGTI L A V+G+E+ A+ DA
Sbjct: 395 INTEGANVLYQKAIDLVAPTKDTTMLDICCGTGTITLAFAKHCKKVMGVEIVPDAIKDAE 454
Query: 641 RNAEINGIKNCRFVCAKAEDVMGSLLKDYL 670
NAE NGIKN +F A+D + S++++ L
Sbjct: 455 FNAEANGIKNAKFFTGNADDFIKSMVREAL 484
>gi|201065699|gb|ACH92259.1| FI05218p [Drosophila melanogaster]
Length = 640
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 119/385 (30%), Positives = 181/385 (47%), Gaps = 66/385 (17%)
Query: 296 KVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIG 355
K ++A + PL+H++Y Q++ K ++ +L K T+ RK P +
Sbjct: 181 KQRTAVEATCPLSHIAYDQQIKQKSEEMSALLAKYTQELRKVNPRAKPHLDKF------- 233
Query: 356 GLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVS 415
+ +L SP VNGYRNK EF+VG + + VGF LG + +G V E D P++
Sbjct: 234 ----QFHEVLPSPTVNGYRNKNEFTVGKNSVGEVVVGFRLGCYSDGSVEVAEVADLPHLP 289
Query: 416 EIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNI 475
E A A FQ+ +++S +N N G +RQL VR + G
Sbjct: 290 EQAKWAARSFQDLVRKSKFLPFNPDGNIGHFRQLMVRCSSATG----------------- 332
Query: 476 SEVMLIAQVSSATF--DDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVA 533
E+ML+A + S+ D+ V E ++ K+F ++ ++N
Sbjct: 333 -ELMLVAGIYSSNLSEDEQV---ELKQELKSF--------------------YEDLAN-- 366
Query: 534 PADAPLRLLSIPKADGEPEESNDVV--------EARIHDSISNLRFCISPTAFFQVNTLA 585
DAP + S+ D + E+ + I D+I L+F ISP AFFQ+NT
Sbjct: 367 --DAPYKCSSLYYQDVKHREAGQTINPVEHISGSTHITDTIQGLQFRISPLAFFQINTEG 424
Query: 586 AEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEI 645
A LY D DT + D+CCGTGTI L A V+G+E+ A+ DA NAE
Sbjct: 425 ANVLYQKAIDLVAPTKDTTMLDICCGTGTITLAFAKHCKKVMGVEIVPDAIKDAEFNAEA 484
Query: 646 NGIKNCRFVCAKAEDVMGSLLKDYL 670
NGIKN +F A+D + S++++ L
Sbjct: 485 NGIKNAKFFTGNADDFIKSMVREAL 509
>gi|380018590|ref|XP_003693210.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A-like [Apis
florea]
Length = 568
Score = 169 bits (428), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 147/523 (28%), Positives = 225/523 (43%), Gaps = 80/523 (15%)
Query: 160 GDQDVELSKCLVH-LPRKWHSDNLKKFLADHGILYKSAKKKKGMTVG--FVKFESVEQLK 216
D E K VH LP+ + KK L + L K + G +V F + E +
Sbjct: 20 ADFTSEKYKIEVHGLPKYYGIGEFKKLLNEKLDLQSCKIKPPKRSSGWLYVSFRNEESRQ 79
Query: 217 NAVEELEGISIGNKTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSN 276
A+E L GI N L + AK A + + +L E +A
Sbjct: 80 KAIETLNGILWKNYKLS-------------------AQIAKPAPDPFIKKKLEEENAKKR 120
Query: 277 GHEDGNGNDEGLAGDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARK 336
+ D+ + +K+ + PL +M Y QLE K+ + +L + + K
Sbjct: 121 LKIE---EDDQIISIEDKVKLTT-----IPLWNMPYPNQLELKQKEMNSILTTICKQMLK 172
Query: 337 ACPNGVSLPEWI-MKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYS-LQAKPTVGFM 394
L +W+ + + GLPC+L IL + YRNKCEF+VG S + K +GF
Sbjct: 173 ESKG--DLLDWLNCQKNKYQGLPCELLPILSIDTIKEYRNKCEFTVGKSDKEDKIVIGFR 230
Query: 395 LGNFREGVTAVEEPVDCPNVSEIACKY---ASIFQEFLQQSDLPVWNRFKNSGFWRQLTV 451
L + G TAV P+D N+ I K + +EF++ ++L ++ SG+WRQ+TV
Sbjct: 231 LSTYASGSTAVG-PID--NLCHIPSKMKVVVKVLEEFMKNTELTPFDPVDYSGYWRQVTV 287
Query: 452 REGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATA 511
R S +M+I + ++ +L F G
Sbjct: 288 RTTLS-------------------DHLMVIVGIHPQDLTSQKLDELKLQLKTFFEIGKGV 328
Query: 512 SSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEA--RIHDSISNL 569
+ +T+L +Q ++ I DG+ EE+ + I + + ++
Sbjct: 329 QAR---VTSLYLQ----------------IMKIKSIDGKDEENFHHISGTKYIEEKLLDM 369
Query: 570 RFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGI 629
+F ISP AFFQ+NTL A+ LY D A DT L D+CCGTGTIGL + G V G+
Sbjct: 370 KFRISPQAFFQINTLGAQVLYKAAIDLAKPNMDTALLDICCGTGTIGLAFSKYCGEVFGL 429
Query: 630 EMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
EM A+ DA N N I NC F KAED++ +++ P
Sbjct: 430 EMIEDAIKDAKENVIANKISNCEFFVGKAEDILSPVIRRTTKP 472
>gi|383847366|ref|XP_003699325.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A-like
[Megachile rotundata]
Length = 569
Score = 169 bits (428), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 148/510 (29%), Positives = 222/510 (43%), Gaps = 81/510 (15%)
Query: 173 LPRKWHSDNLKKFLADHGIL----YKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIG 228
LP+ + KK L + L K K+ G +V F + E + A+E+L GI
Sbjct: 34 LPKYYGIGEFKKLLNEKLELQICKIKPPKRSSGWI--YVSFRNEESRQKAIEKLNGILWK 91
Query: 229 NKTL--KVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDE 286
N L ++A P F K K E+ + A S ED
Sbjct: 92 NCKLNAQIAKPAPDPFIKR-----------KLEQETERKRLKVDEDAQSISIED------ 134
Query: 287 GLAGDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPE 346
KVK TPL + YS QLE K+ + +L + V +
Sbjct: 135 ---------KVKFT---TTPLWDVPYSSQLELKQKEMRHILTNICNQMLNESRKDVL--D 180
Query: 347 WIMKSRE-IGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQA-KPTVGFMLGNFREGVTA 404
W+ + +E GLPC+L IL + + GYRNKCEF+VG S + K T+GF L ++ G TA
Sbjct: 181 WLKQQKEKYEGLPCELLPILSTEVTTGYRNKCEFTVGRSTEKNKVTIGFRLSSYAAGSTA 240
Query: 405 VEEPVD--CPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLD 462
V P+D C ++ + + +EF+Q S+L + ++G+WRQ+TVR
Sbjct: 241 VG-PIDHLC-HIPDKMKAVVKVLEEFMQDSELKPFEPVDHTGYWRQVTVRTTLG------ 292
Query: 463 VENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALV 522
S++M+I V ++ +L + F G A + +T+L
Sbjct: 293 -------------SDLMVIVAVHPQDLTSEKLDEIKLQLKQFFETGKGAE---VHVTSLY 336
Query: 523 IQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVN 582
Q + N AD+ G + I +++ ++F +SP AFFQVN
Sbjct: 337 FQ----IMNKKSADS----------KGGDNYFHISGTRYIEETLLGMKFRVSPQAFFQVN 382
Query: 583 TLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRN 642
T+ A++LY D A DT L D+CCGTGTI L + V G+E+ A+ DA N
Sbjct: 383 TIGAQELYKAAIDLAKPTADTALLDICCGTGTIALAFSKYCSEVFGVEVVEDAIEDAKEN 442
Query: 643 AEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
A N I NC F KAED++ ++ P
Sbjct: 443 AVANQITNCEFFVGKAEDILSPIIHRTTKP 472
>gi|443694121|gb|ELT95334.1| hypothetical protein CAPTEDRAFT_135146 [Capitella teleta]
Length = 549
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 147/520 (28%), Positives = 224/520 (43%), Gaps = 105/520 (20%)
Query: 165 ELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEG 224
E+ K ++ P+++ + LKK L + K + FV F E + A+E L+G
Sbjct: 36 EIFKIEINHPKQYGTAQLKKRLQSLDLKPSKVKVITRERLSFVTFRCEEDREKALEVLQG 95
Query: 225 ISIGNKTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGN 284
K +KV K+A +A P HE G N
Sbjct: 96 HKWMGKNMKV----------------------KRARAAADP------MLRKRKHEAGELN 127
Query: 285 DEGLAGDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSL 344
D VTP +++Y QL+ K + + ++KL + P
Sbjct: 128 D-----------------AVTPWWNITYQDQLKKKNADMKEYIRKLGKIIEHNNP----- 165
Query: 345 PEWIMKSREI------GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQA-KPTVGFMLGN 397
+MK + I GL C+L+ ++ SP+ GYRNK EF++G S+ TVGF LG
Sbjct: 166 ---LMKKKLIEIRYNNDGLCCQLDEVVASPIEKGYRNKAEFTIGKSVDGIDKTVGFRLGQ 222
Query: 398 FREGVTAVEEPVDCPNVSEIACKYASIFQEFLQ-QSDLPVWNRFKNSGFWRQLTVREGRS 456
+R G V EP C N+ + A + Q++L+ QS+ + G W TVR
Sbjct: 223 YRSGNLCVVEPEKCLNIPPQTIQTAKMIQDYLRLQSEYCALDPESKVGHWMTATVRTNSQ 282
Query: 457 PGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGA-TASSPS 515
+EV + Q + +E E+L F + +
Sbjct: 283 -------------------NEVTAMLQFHPQALSQDELLAEEEKLRSFFLSPVGKETQEQ 323
Query: 516 LPLTALVIQDHQGVSNVAPADAPLRLLSIPKADG-EPEESNDVV---EARIHDSISNLRF 571
L + + + L + DG +P S+ + + +HD+++ F
Sbjct: 324 LKIISFFL-----------------LFQSDRHDGAKPSLSSRFLFHEQLTVHDTLT---F 363
Query: 572 CISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEM 631
+S AFFQVNT AAE+LYS + G + + DVCCGTGTIGL++A +V V+GIEM
Sbjct: 364 RVSLDAFFQVNTPAAERLYSQVAELCGGGASSTVLDVCCGTGTIGLSIAKQVEQVVGIEM 423
Query: 632 NASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLN 671
AV DA NAEINGI N F C KAE+++ +++ Y N
Sbjct: 424 CPDAVKDAKHNAEINGITNAEFHCGKAEELLPWMIRRYGN 463
Score = 42.7 bits (99), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 26/34 (76%)
Query: 749 KNVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
K VVA+VDPPR GLH +V+ +R A ++RL+++
Sbjct: 464 KEVVAVVDPPRAGLHNSVVLAIRKSAFVKRLVYV 497
>gi|296235980|ref|XP_002763130.1| PREDICTED: tRNA (uracil(54)-C(5))-methyltransferase homolog isoform
1 [Callithrix jacchus]
Length = 504
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 121/368 (32%), Positives = 172/368 (46%), Gaps = 43/368 (11%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
DVVTPL +SY QL+ K + ++L++L + NGV + + KS L C L
Sbjct: 86 DVVTPLWRLSYEEQLKVKFEAQKKILQRLESYIQML--NGVDVTTAVPKSER---LSCLL 140
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
I+ SP++NGYRNK FSV P TVG+ LG +R G + N+ E +
Sbjct: 141 HPIIPSPVINGYRNKSTFSVNRGPDGNPKTVGYYLGTWRGGNIVCVQSNHLKNIPEKHSQ 200
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
A ++ FL+QS + F G+WR+L VR M
Sbjct: 201 VAQYYEIFLRQSPMEPCLVFHEGGYWRELIVRTNSQ-------------------GHTMA 241
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
I + + + E + + F G A+ LT+L Q+ ++ + +P
Sbjct: 242 IITLHPQKLSQEELRGQKEIVKEFFIKGPGAACD---LTSLYFQE-STMTRCSHQQSPFE 297
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
LL GEP I + + +L+ ISP AFFQ+NT AE LY G+ A +
Sbjct: 298 LLF-----GEP---------YIFEELLSLKIRISPDAFFQINTAGAEMLYRTVGELAGVN 343
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
DT+L D+CCGTG IGL+LA V+GIE+ AV DA A NGI N F +AE
Sbjct: 344 SDTILLDICCGTGVIGLSLAQHTSQVLGIELVEQAVEDARWTAAYNGITNSEFHTGRAEK 403
Query: 661 VMGSLLKD 668
++ LLK
Sbjct: 404 ILPGLLKS 411
>gi|224098629|ref|XP_002187418.1| PREDICTED: tRNA (uracil(54)-C(5))-methyltransferase homolog
[Taeniopygia guttata]
Length = 467
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 122/369 (33%), Positives = 169/369 (45%), Gaps = 48/369 (13%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
+ VTPL +SY QL+ K S ++L+ L L E + +++ GGL C L
Sbjct: 54 NAVTPLWRLSYQEQLQVKYESQKKILQTLASR----------LEELGIDAQKPGGLCCPL 103
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
+ ++ SP+++GYRNK FSV P TVG +G RE N+ +
Sbjct: 104 QPVVPSPIISGYRNKSTFSVNRGPDGNPKTVGMYVGTGRERNIVCVNANHVENIPSKHKQ 163
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
A ++EF+ QS L F G WR+L VR R M
Sbjct: 164 VAQCYEEFICQSPLDSCILFHEGGHWRELVVRTTRC-------------------GHTMA 204
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
I + ++ L + F G A LT+L Q+ ++ + +P +
Sbjct: 205 IITFHPQQLGQEALATQKALLKEFFTCGPGAVCA---LTSLYFQE-STMTRCSHEQSPYQ 260
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
LL G P I + + L+F ISP AFFQVNT AE LY G+
Sbjct: 261 LL-----HGAPH---------IFEELHGLKFRISPDAFFQVNTAGAEVLYQAVGELCQAT 306
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
DT+L D+CCGTGTIGL+LAH+V VIG+E+ A+ DA NA NGI NC F KAE
Sbjct: 307 GDTVLLDICCGTGTIGLSLAHQVSKVIGVEVVEKAIEDAEWNAAFNGISNCEFHSGKAEA 366
Query: 661 VMGSLLKDY 669
V+ LL +
Sbjct: 367 VLPQLLALW 375
>gi|355704988|gb|EHH30913.1| hypothetical protein EGK_20733 [Macaca mulatta]
Length = 506
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 122/370 (32%), Positives = 175/370 (47%), Gaps = 45/370 (12%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
DVVTPL +SY QL+ K + ++L++L + NGV++ + KS LPC L
Sbjct: 86 DVVTPLWRLSYEEQLKVKFEAQKKILQRLESYIQML--NGVNVTTAVPKSES---LPCLL 140
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
I+ SP++NGYRNK FSV P TVG+ LG +R+G + N+ E +
Sbjct: 141 HPIIPSPVINGYRNKSTFSVNRGPDGNPKTVGYYLGTWRDGNIVCVRSNNLKNIPEKHSQ 200
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
A ++ FL+QS L F G+WR+L VR M
Sbjct: 201 VAQYYEVFLRQSPLEPCLVFHEGGYWRELIVRTNSQ-------------------GHTMA 241
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
I ++ + E + + F G A+ LT+L Q+ ++ + +P +
Sbjct: 242 IITFHPQKLSQEELHVQKETVKEFFIRGPGAACD---LTSLYFQE-STMTRCSHQQSPYQ 297
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
LL GEP I + + +L+ ISP AFFQ+NT AE LY G+ +
Sbjct: 298 LLF-----GEP---------YIFEELLSLKIRISPDAFFQINTAGAEMLYRTVGELTGVN 343
Query: 601 PDTLLFDVCCGTG--TIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658
DT+L D+CCGTG IGL+LA V+GIE+ AV DA A NGI N F +A
Sbjct: 344 SDTILLDICCGTGKCVIGLSLAQHTSQVLGIELVEQAVEDARWTAAFNGITNSEFHTGRA 403
Query: 659 EDVMGSLLKD 668
E ++ LLK
Sbjct: 404 EKILPGLLKS 413
>gi|156549461|ref|XP_001603783.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A-like
[Nasonia vitripennis]
Length = 615
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 141/506 (27%), Positives = 220/506 (43%), Gaps = 75/506 (14%)
Query: 173 LPRKWHSDNLKKFLADHGILYKSAKK--KKGMTVGFVKFESVEQLKNAVEELEGISIGNK 230
LP+ + KKFL + L + K K+G ++ F S E + A++ L GI +
Sbjct: 83 LPKHYGIGEFKKFLNEKLELNANKIKPPKRGSGWAYICFRSEENREKAIKVLNGIEWKHA 142
Query: 231 TL--KVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGL 288
L AN P + K KQ E A S + E L
Sbjct: 143 RLTAHAANPAPDPYMKR-----------KQ-----------ERRAESRKKARIDNPAESL 180
Query: 289 AGDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWI 348
+ + +K+ + TPL M Y QLE K+ + ++ +L + K L +W
Sbjct: 181 SPE-ERIKINT-----TPLFSMPYKEQLEFKQKEMRDVINRLGQEMSKV---NKDLEKWY 231
Query: 349 MKSREI-GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQ-AKPTVGFMLGNFREGVTAVE 406
++ GLPC+L I+ + + GYRNKCEF++G + +K +GF L ++ G AV
Sbjct: 232 NSQKQKHNGLPCELGEIVHTDVTEGYRNKCEFTIGLDVTGSKKMIGFRLSSYAAGSIAVG 291
Query: 407 EPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENL 466
D ++ + I ++F+ SDL ++ +SG+W+Q+T R R
Sbjct: 292 PIDDLCHIPQQMKTAIKILEKFVCDSDLDTFDPVTHSGYWKQVTARTTRK---------- 341
Query: 467 EVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDH 526
+ +ML+ ++ D S L + F A+ +T+L Q
Sbjct: 342 ---------NHLMLVVAINPQNMSDEDRKSLKNELKEFFEQHKEAN-----VTSLFFQTI 387
Query: 527 QGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAA 586
+ + +S I +++ + F ISP AFFQ+NTL A
Sbjct: 388 EKKGAGGEGGGVIEHIS--------------GTHYIEETLLGMTFRISPEAFFQINTLGA 433
Query: 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN 646
E LY+ + A DT L DVCCGTGTIGL+ A V+GIEM SA+ +A NA+ N
Sbjct: 434 EALYNTAIELAKPLTDTALLDVCCGTGTIGLSFAKHCDEVLGIEMTPSAIENAKVNAKEN 493
Query: 647 GIKNCRFVCAKAEDVMGSLLKDYLNP 672
+KNC F KAED++ ++ P
Sbjct: 494 DVKNCEFFVGKAEDILLPVINRTTKP 519
>gi|355757539|gb|EHH61064.1| hypothetical protein EGM_18991 [Macaca fascicularis]
Length = 506
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 122/370 (32%), Positives = 175/370 (47%), Gaps = 45/370 (12%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
DVVTPL +SY QL+ K + ++L++L + NGV++ + KS LPC L
Sbjct: 86 DVVTPLWRLSYEEQLKVKFEAQKKILQRLESYIQML--NGVNVTTAVPKSES---LPCLL 140
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
I+ SP++NGYRNK FSV P TVG+ LG +R+G + N+ E +
Sbjct: 141 HPIIPSPVINGYRNKSTFSVNRGPDGNPKTVGYYLGTWRDGNIVCVRSNNLKNIPEKHSQ 200
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
A ++ FL+QS L F G+WR+L VR M
Sbjct: 201 VAQYYEVFLRQSPLEPCLVFHEGGYWRELIVRTNSQ-------------------GHTMA 241
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
I ++ + E + + F G A+ LT+L Q+ ++ + +P +
Sbjct: 242 IITFHPQKLSQEELHVQKETVKEFFIRGPGAACD---LTSLYFQE-STMTRCSHQQSPYQ 297
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
LL GEP I + + +L+ ISP AFFQ+NT AE LY G+ +
Sbjct: 298 LLF-----GEP---------YIFEELLSLKIRISPDAFFQINTAGAEMLYRTVGELTGVN 343
Query: 601 PDTLLFDVCCGTG--TIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658
DT+L D+CCGTG IGL+LA V+GIE+ AV DA A NGI N F +A
Sbjct: 344 SDTILLDICCGTGKCVIGLSLAQHTSQVLGIELVEQAVEDARWTAAFNGITNSEFHTGRA 403
Query: 659 EDVMGSLLKD 668
E ++ LLK
Sbjct: 404 EKILPGLLKS 413
>gi|301786386|ref|XP_002928615.1| PREDICTED: LOW QUALITY PROTEIN: tRNA (uracil-5-)-methyltransferase
homolog [Ailuropoda melanoleuca]
Length = 544
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 119/368 (32%), Positives = 174/368 (47%), Gaps = 43/368 (11%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
DVVTPL +SY QL+ K + ++L++L +K NGV++ + GL C L
Sbjct: 126 DVVTPLWRLSYEEQLKVKFEAQKKILQRLESYLQKL--NGVNV---TTSASRAEGLSCLL 180
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
I+ SP++NGYRNK FSV P TVG+ LG +R+ N+ E +
Sbjct: 181 HPIIPSPVINGYRNKSTFSVNRGPDGNPKTVGYYLGTWRDRSIVCVWSNHLKNIPEKHNQ 240
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
A ++ FL+QS + F G+WR+L VR +M
Sbjct: 241 VAQYYEVFLRQSPMEPCLLFHEGGYWRELIVRTNSR-------------------GHMMA 281
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
I ++ + E + K F +G A LT+L Q+ + + + +P +
Sbjct: 282 IITFHPQELRQEELSVQKEAVKKFFTSGPGAVCD---LTSLYFQE-STMMHCSHQQSPYQ 337
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
LL GEP D++ +I ISP AFFQ+NT AE LY G+ + +
Sbjct: 338 LLF-----GEPHLYEDLLGLKIR---------ISPDAFFQINTAGAEVLYRTVGELSGVN 383
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
+T+L D+CCGTG IGL+LA V+GIE+ AV +A A NGI NC F +AE
Sbjct: 384 SNTILLDICCGTGVIGLSLAQYASQVLGIELVEQAVQNARXTAAFNGITNCEFHAGRAEK 443
Query: 661 VMGSLLKD 668
++ LLK
Sbjct: 444 ILPQLLKS 451
>gi|350407991|ref|XP_003488264.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A-like
[Bombus impatiens]
Length = 570
Score = 166 bits (421), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 145/520 (27%), Positives = 221/520 (42%), Gaps = 84/520 (16%)
Query: 160 GDQDVELSKCLVH-LPRKWHSDNLKKFLADHGILYKSAKKKKGMTVG--FVKFESVEQLK 216
D E K VH LP+ + KK L + L K + G +V F + E +
Sbjct: 20 ADFTSEKYKIEVHGLPKYYGIGEFKKLLNEKLELQSCKIKPPKRSSGWLYVSFRNEENRR 79
Query: 217 NAVEELEGISIGNKTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSN 276
A+E L GI L N K +++ A P +
Sbjct: 80 KAIEILNGI--------------------------LWKNCKLSAQIAKPA--PDPFVKRR 111
Query: 277 GHEDGNGNDEGLAGDGSGLKVKSARDVVT-PLAHMSYSVQLEHKKNSIAQMLKKLTRNAR 335
E+ L D + ++ + T PL M Y QLE K+ ++ +L + +
Sbjct: 112 LEEETTKKRLKLDKDDQNISIEDKVKLTTIPLWEMPYPSQLELKQKEMSLILSTICKQML 171
Query: 336 KACPNGVSLPEWIMKSR-EIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTV-GF 393
K L +W+ + + GLPC+L IL + + YRNKCEF+VG S + V GF
Sbjct: 172 KESKG--DLLDWLNHQKTKYHGLPCELLPILSTDTITEYRNKCEFTVGKSEKENEVVIGF 229
Query: 394 MLGNFREGVTAVEEPVD----CPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQL 449
L ++ G TAV P+D PN ++ K + +EF++ ++L ++ +SG+WRQ+
Sbjct: 230 RLSSYAAGSTAVG-PIDNLCHIPNTMKVVVK---VLEEFMKNTELKPFDPVDHSGYWRQV 285
Query: 450 TVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGA 509
TVR ++VM+I + + +L F G
Sbjct: 286 TVRSTLC-------------------NDVMVIVGMHPQDLSSEKLEELQLQLKTFFETGN 326
Query: 510 TASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEA--RIHDSIS 567
+ +T+L +Q ++ + D + E + + I + +
Sbjct: 327 GVQAR---VTSLYLQ----------------IMKLKSVDEKSENNFYHISGTKYIEEMLL 367
Query: 568 NLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVI 627
++F ISP AFFQVNTL AE LY D A DT L D+CCGTGTIGL + G V
Sbjct: 368 GMKFRISPQAFFQVNTLGAEVLYKAAIDLAKPTVDTALLDICCGTGTIGLAFSKYCGEVF 427
Query: 628 GIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLK 667
GIEM A+ DA N N + NC F KAEDV+ +++
Sbjct: 428 GIEMIEDAIKDAKENVVANEVSNCEFFVGKAEDVLSPVIR 467
>gi|300121541|emb|CBK22060.2| unnamed protein product [Blastocystis hominis]
Length = 628
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 118/328 (35%), Positives = 159/328 (48%), Gaps = 44/328 (13%)
Query: 350 KSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREG------VT 403
K+ E G C + IL V GYRNKC F++G P +GF +G+F G +
Sbjct: 219 KADEDEGQICSMLPILTHSKVEGYRNKCTFTIGKDRNGAPCIGFRMGSFINGNVIIGPIE 278
Query: 404 AVEEPV----DCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGK 459
P D VS + + + F+ ++ ++ GFWR L +R +
Sbjct: 279 YARSPFLTFSDVVVVSPLMKQVVKRVEAFIVSKSYQTYDMCQHLGFWRSLLLRYSERTNQ 338
Query: 460 PLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLT 519
L + + N E ++ + AQ + A DA SE + + K A S T
Sbjct: 339 LL-ILVVVGNPYERSLPK----AQEALAKLTDAT-RSEIDGVMKELLAFF-----SFRFT 387
Query: 520 ALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFF 579
L ++ +D P+ L GEP +E R+ D L F +SP AFF
Sbjct: 388 GL---------SMPGSDCPIVTLK-----GEP-----FIEERLFD----LSFRVSPYAFF 424
Query: 580 QVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDA 639
QVNT AE LY GDW L +TLL DVCCGTGTIGL LA RV +IG+++ ASA+ DA
Sbjct: 425 QVNTPVAEVLYKNIGDWLSLHENTLLLDVCCGTGTIGLCLASRVKFLIGVDIEASAIEDA 484
Query: 640 HRNAEINGIKNCRFVCAKAEDVMGSLLK 667
NAE NGIKNC F+C+ AE VM LLK
Sbjct: 485 RLNAEANGIKNCEFICSPAEKVMADLLK 512
>gi|148688457|gb|EDL20404.1| RIKEN cDNA 4732479N06, isoform CRA_b [Mus musculus]
gi|148688458|gb|EDL20405.1| RIKEN cDNA 4732479N06, isoform CRA_b [Mus musculus]
Length = 493
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 120/367 (32%), Positives = 170/367 (46%), Gaps = 43/367 (11%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
DVVTPL +SY QL+ K + ++L+ L + + +GVS + + + GL C L
Sbjct: 75 DVVTPLWRLSYEAQLKVKFEAQKKLLQSLESHLKVL--HGVSD---TVAAHQSEGLRCLL 129
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
I+ SP GYRNK FSV S P TVG+ LG +++G N+ E +
Sbjct: 130 HPIIPSPTTTGYRNKSTFSVYRSPDGNPKTVGYYLGTWKDGNVVCLPCNHLKNIPEKHSQ 189
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
A ++ FL+QS + F G WR+L VR R M
Sbjct: 190 VAQYYEVFLRQSSVEPCLLFHEGGHWRELVVRTNRQ-------------------GHTMA 230
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
I + V + L F G A LT+L Q+ ++ + +P +
Sbjct: 231 IVTFHPQGLSEEEVCVQKVTLKDFFTKGPGAICE---LTSLYFQE-STMTRCSHQQSPYQ 286
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
LL GEP D++ +I ISP AFFQ+NT AE LY + G+ + +
Sbjct: 287 LLF-----GEPHIFEDLLGLKIR---------ISPDAFFQINTAGAEMLYRIIGELSGVN 332
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
++LL D+CCGTG IGL+LA R V GIE+ AV DA A NG+ NC F +AE
Sbjct: 333 SESLLLDICCGTGVIGLSLAQRASQVHGIELVEQAVEDARWTAAFNGVTNCEFHAGRAET 392
Query: 661 VMGSLLK 667
++ LLK
Sbjct: 393 ILPQLLK 399
>gi|440899622|gb|ELR50897.1| tRNA (uracil-5-)-methyltransferase-like protein A, partial [Bos
grunniens mutus]
Length = 578
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 128/390 (32%), Positives = 174/390 (44%), Gaps = 65/390 (16%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSR-EIGGLPCK 360
DVVTPL + Y QLE K+ Q+L+KL R N LP W++ R + C
Sbjct: 101 DVVTPLWAVPYEEQLERKRQECEQVLQKLAREI--GSTNRALLP-WLLSQRHKHNKACCP 157
Query: 361 LEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIAC 419
LEG+ SP YRNKCEF VG + + TVG L ++ G AV P D ++
Sbjct: 158 LEGVRPSPQQTEYRNKCEFLVGVGVDGEDNTVGCRLSKYKSGTCAVAAPFDTVHIPGATK 217
Query: 420 KYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVM 479
+ FQEF++ + ++ SG W+QLTVR R + M
Sbjct: 218 QVVRAFQEFIRSTPYSAYDPETYSGHWKQLTVRTSRR-------------------GQAM 258
Query: 480 LIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL 539
IA + LA+ F G +S GV+ + +
Sbjct: 259 AIAYFHPQNLSPEELAGLKTSLAQYFMEGPGKAS--------------GVTCLYFVEEGQ 304
Query: 540 RLLSIPKADGEPEESNDVVEAR-IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWAD 598
R P +G P E V R I + + L F ISP AFFQVNT AAE LY+L DWA
Sbjct: 305 R--KTPSQEGLPLE--HVAGDRCIREDVLGLTFRISPHAFFQVNTAAAEVLYTLIQDWAQ 360
Query: 599 LGPDTLLFDVCCGTGTIGLTLA----------------------HRVGMVIGIEMNASAV 636
L + + DVCCGTGTIGL LA +V V+G+E++ AV
Sbjct: 361 LDAGSTVLDVCCGTGTIGLALARPLLHCPRTPGLGAHQSFLSPLQKVKRVVGVELSQEAV 420
Query: 637 SDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
DA NA N + N F C +AE+++ +L+
Sbjct: 421 EDARVNALDNELSNVEFHCGRAEELVPALV 450
>gi|350595838|ref|XP_003135289.2| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog, partial [Sus
scrofa]
Length = 615
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 122/368 (33%), Positives = 179/368 (48%), Gaps = 43/368 (11%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
DVVTPL +SY QL+ K + ++L++L + NGVS+ +S GL C L
Sbjct: 239 DVVTPLWRLSYEEQLKVKFEAQKKILQRLESYLQML--NGVSVTTAAPRSE---GLCCCL 293
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
I+ SP+++GYRNK FSV P TVG+ LG +R+ + N+ E +
Sbjct: 294 HPIIPSPVIDGYRNKSTFSVNRGPDGNPKTVGYYLGTWRDRNIVCVQSNHLKNIPEKHNQ 353
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
A ++ FL+QS + F G WR+L VR S G + + + + E+ E+ +
Sbjct: 354 VAQYYEIFLRQSPMEPCLLFHEGGHWRELIVRT-NSQGHTMAI--ITFHPQELRQEELCV 410
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
+ E + + F G A LT+L Q+ ++ + +P +
Sbjct: 411 ----------------QKETVKEFFTKGPGAVCD---LTSLYFQEST-MTRCSHQQSPYQ 450
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
LL GEP D++ +I ISP AFFQ+NT AE LY G+ + +
Sbjct: 451 LLF-----GEPHIFEDLLGLKIR---------ISPDAFFQINTAGAEMLYRTVGELSGVN 496
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
DT+L D+CCGTG IGL+LA V+GIE+ AV DA A NGI NC F +AE
Sbjct: 497 SDTILLDICCGTGVIGLSLAQYTSQVLGIELVEQAVEDARWTAAFNGITNCEFHTGRAEK 556
Query: 661 VMGSLLKD 668
++ LLK
Sbjct: 557 ILPQLLKS 564
>gi|269784754|ref|NP_766128.2| tRNA (uracil(54)-C(5))-methyltransferase homolog isoform a [Mus
musculus]
gi|269784756|ref|NP_001161466.1| tRNA (uracil(54)-C(5))-methyltransferase homolog isoform a [Mus
musculus]
gi|81897080|sp|Q8BQJ6.1|TRM2_MOUSE RecName: Full=tRNA (uracil(54)-C(5))-methyltransferase homolog;
AltName: Full=TRM2 homolog
gi|26340260|dbj|BAC33793.1| unnamed protein product [Mus musculus]
gi|34784571|gb|AAH56937.1| Trmt2b protein [Mus musculus]
Length = 493
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 119/367 (32%), Positives = 170/367 (46%), Gaps = 43/367 (11%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
DVVTPL +SY QL+ K + ++L+ L + + +GVS + + + GL C L
Sbjct: 75 DVVTPLWRLSYEAQLKVKFEAQKKLLQSLESHLKVL--HGVSD---TVAAHQSEGLRCLL 129
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
I+ SP GYRNK FSV S P TVG+ LG +++G N+ E +
Sbjct: 130 HPIIPSPTTTGYRNKSTFSVYRSPDGNPKTVGYYLGTWKDGNVVCLPCNHLKNIPEKHSQ 189
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
A ++ FL+QS + F G WR+L VR R M
Sbjct: 190 VAQYYEVFLRQSSVEPCLLFHEGGHWRELVVRTNRQ-------------------GHTMA 230
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
I + V + L F G A LT+L Q+ ++ + +P +
Sbjct: 231 IVTFHPQGLSEEEVCVQKVTLKDFFTKGPGAICE---LTSLYFQE-STMTRCSHQQSPYQ 286
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
LL GEP D++ +I ISP AFFQ+NT AE LY + G+ + +
Sbjct: 287 LLF-----GEPHIFEDLLGLKIR---------ISPDAFFQINTAGAEMLYRIIGELSGVN 332
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
++LL D+CCGTG IGL++A R V GIE+ AV DA A NG+ NC F +AE
Sbjct: 333 SESLLLDICCGTGVIGLSVAQRASQVHGIELVEQAVEDARWTAAFNGVTNCEFHAGRAET 392
Query: 661 VMGSLLK 667
++ LLK
Sbjct: 393 ILPQLLK 399
>gi|26324958|dbj|BAC26233.1| unnamed protein product [Mus musculus]
Length = 493
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 119/367 (32%), Positives = 170/367 (46%), Gaps = 43/367 (11%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
DVVTPL +SY QL+ K + ++L+ L + + +GVS + + + GL C L
Sbjct: 75 DVVTPLWRLSYEAQLKVKFEAQKKLLQSLESHLKVL--HGVSD---TVAAHQSEGLRCLL 129
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
I+ SP GYRNK FSV S P TVG+ LG +++G N+ E +
Sbjct: 130 HPIIPSPTTTGYRNKSTFSVYKSPDGNPKTVGYYLGTWKDGNVVCLPCNHLKNIPEKHSQ 189
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
A ++ FL+QS + F G WR+L VR R M
Sbjct: 190 VAQYYEVFLRQSSVEPCLLFHEGGHWRELVVRTNRQ-------------------GHTMA 230
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
I + V + L F G A LT+L Q+ ++ + +P +
Sbjct: 231 IVTFHPQGLSEEEVCVQKVTLKDFFTKGPGAICE---LTSLYFQE-STMTRCSHQQSPYQ 286
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
LL GEP D++ +I ISP AFFQ+NT AE LY + G+ + +
Sbjct: 287 LLF-----GEPHIFEDLLGLKIR---------ISPDAFFQINTAGAEMLYRIIGELSGVN 332
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
++LL D+CCGTG IGL++A R V GIE+ AV DA A NG+ NC F +AE
Sbjct: 333 SESLLLDICCGTGVIGLSVAQRASQVHGIELVEQAVEDARWTAAFNGVTNCEFHAGRAET 392
Query: 661 VMGSLLK 667
++ LLK
Sbjct: 393 ILPQLLK 399
>gi|291408091|ref|XP_002720420.1| PREDICTED: TRM2 tRNA methyltransferase 2 homolog B isoform 1
[Oryctolagus cuniculus]
Length = 503
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 121/368 (32%), Positives = 170/368 (46%), Gaps = 44/368 (11%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
DVVTPL +SY QL+ K + ++L++L + V+ S+E L C L
Sbjct: 86 DVVTPLWRLSYEEQLKVKFEAQKKILQRLESYLQMLQRVKVTAAA---TSKE---LCCLL 139
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
I+ SP++NGYRNK FSV P TVG+ LG +R+G + N+ E +
Sbjct: 140 HPIIPSPVINGYRNKSTFSVNRGPDGNPKTVGYYLGTWRDGNVVCVQSSHLKNIPEKHNQ 199
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
A ++ FL+QS L F G WR+LTVR M
Sbjct: 200 VAQYYEVFLRQSPLEPCLLFHEGGHWRELTVRTNHQ-------------------GHTMA 240
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
I + + E + + F G A LT+L Q+ ++ + +P +
Sbjct: 241 IVTFHPQELSQEELCVQKEAIKEFFLRGPGAVCD---LTSLYFQE-STMTRCSHQQSPYQ 296
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
LL GEP I + + L+ ISP AFFQVNT AE LY G+ + +
Sbjct: 297 LLF-----GEP---------YIFEGLLGLKIRISPDAFFQVNTAGAEMLYQTVGELSGVN 342
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
+T+L D+CCGTG IGL+LA V+GIE+ AV DA A NGI NC F +AE
Sbjct: 343 ANTILLDICCGTGAIGLSLAQHASQVLGIELVEQAVEDARWTAAFNGITNCEFHAGRAEK 402
Query: 661 VMGSLLKD 668
++ LLK
Sbjct: 403 ILPWLLKS 410
>gi|363745660|ref|XP_003643367.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog [Gallus
gallus]
Length = 478
Score = 162 bits (410), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 121/369 (32%), Positives = 168/369 (45%), Gaps = 48/369 (13%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
D VTPL + Y QL+ K S+ ++L+ LT + L E ++ GL C L
Sbjct: 65 DAVTPLWRLPYQEQLQVKYESLREVLQTLTSH----------LLELGGAVQDPSGLCCPL 114
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
+ ++ SP +NGYRNK FSV P TVG +G R N +
Sbjct: 115 QPVVPSPTINGYRNKSTFSVNRGPDGNPKTVGLYVGTGRGQNIVCVRTDHMKNTPLQHKQ 174
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
A +++F+++S L F G WR+L VR + M
Sbjct: 175 VAQCYEQFIRRSPLDSCILFHEGGHWRELVVRTSQH-------------------GHTMA 215
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
I + ++ L + F G A LT+L Q+ ++ + +P +
Sbjct: 216 IVTFHPQQLGQEALAAQKALLREFFTCGPGAVC---ALTSLYFQE-STMTRCSHEHSPFQ 271
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
LL GEP DV+ +LRF ISP AFFQVNT AE LY + + +
Sbjct: 272 LL-----HGEPHIFEDVL---------DLRFRISPDAFFQVNTSGAEVLYRVVRELSQAA 317
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
DT+L DVCCGTGTIGL+LA V VIG+E+ A+ DA NA NGI NC F KAE
Sbjct: 318 GDTVLLDVCCGTGTIGLSLARHVSKVIGVEIVQKAIEDARWNAAFNGISNCEFHSGKAEA 377
Query: 661 VMGSLLKDY 669
V+ +LL +
Sbjct: 378 VIPALLSSW 386
>gi|403346871|gb|EJY72844.1| HpaII tinys locus 9c protein [Oxytricha trifallax]
Length = 609
Score = 162 bits (409), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 133/519 (25%), Positives = 235/519 (45%), Gaps = 64/519 (12%)
Query: 162 QDVELSKCLVHL-PRKWHSDNLKKF---LADHGILYKSAKKKKGMTVGFVKFESVEQLKN 217
Q + +S C+ L P D +K F L + + KK+G F+ F EQLK+
Sbjct: 49 QVIPVSLCVTGLQPHMIEKDLIKFFMKALNREDLPLQGVLKKRGNNFAFLSFTDQEQLKS 108
Query: 218 AVEELEGISIGNKTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNG 277
K L + ++P +K T NAK+ + +
Sbjct: 109 F-----------KELFMTEIMPNMPKMRLKES-TKKINAKEYKPVKDREGMRQDADRKKE 156
Query: 278 HEDGNGNDEGLAGDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNA-RK 336
+ N E +A + +K+ S D VTP H+ Y Q++ K+ + ++LK T R
Sbjct: 157 RQIQNITPEEIAEE---MKI-SVEDRVTPYHHLDYPEQIKRKEQQLIEVLKGFTSQLERD 212
Query: 337 ACPNGVSLPEWIMKSREIGGLPCKLEGILGSPL--VNGYRNKCEFSVGYSLQAKPT-VGF 393
NG P W ++ LPC+L ++ L +N YRNK EF++G + VGF
Sbjct: 213 IQKNGEQRPSWFSMDKD---LPCELSHVIECDLDYINQYRNKVEFTIGRRFEDNEICVGF 269
Query: 394 MLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVRE 453
GN +G+ V+ P + ++S+ + + A I ++ ++ S + ++R N GFWR L RE
Sbjct: 270 NKGNMSKGIMYVDYPDNIKSISDSSVQVAKIVEKIVKDSGIEPYDRKINQGFWRILLYRE 329
Query: 454 GRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASS 513
+ + L IS V +SE L+ + + A++ + FA
Sbjct: 330 SKKTNQAL--------ISVV-VSEDYLVTEEQLTAIEQALIAN--------FAENTKLGQ 372
Query: 514 PSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCI 573
++ +++ + +S ++LLS + + + + +F +
Sbjct: 373 HTIVSLSMIFSNE--ISGAYKETDKVKLLS--------------GQMNYEEQLFDFKFTV 416
Query: 574 SPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNA 633
SP AFFQVNT EK+ L D+ + +T++ D+CCGTG IG+ L+ + VIG+++
Sbjct: 417 SPFAFFQVNTNVFEKMLKLIEDFTKINENTVVLDICCGTGAIGICLSAKARKVIGVDIIE 476
Query: 634 SAVSDAHRNAEINGI----KNCRFVCAKAEDVMGSLLKD 668
SA+ +A +N ++N C + +AE+V+ +++KD
Sbjct: 477 SAIENAKQNIQLNKDLIDPAKCEYYAGRAEEVLPNIVKD 515
>gi|304555603|ref|NP_001182134.1| tRNA (uracil-5-)-methyltransferase homolog A isoform 4 [Mus
musculus]
gi|51316456|sp|Q8BNV1.1|TRM2A_MOUSE RecName: Full=tRNA (uracil-5-)-methyltransferase homolog A;
AltName: Full=HpaII tiny fragments locus 9c protein
gi|26348397|dbj|BAC37838.1| unnamed protein product [Mus musculus]
Length = 574
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 125/377 (33%), Positives = 172/377 (45%), Gaps = 41/377 (10%)
Query: 297 VKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGG 356
V DVVTPL + Y+ QLE K+ ++L+KL + N LP +++ ++
Sbjct: 155 VTQIADVVTPLWTVPYTEQLEQKRLECERVLQKLAKEIGNT--NRALLPWLLLQRQQHNK 212
Query: 357 LPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVS 415
C LEG+ SP YRNKCEF VG + K TVG LG ++ G AV P D ++
Sbjct: 213 ACCPLEGVKPSPQQTEYRNKCEFLVGVGVDGKDNTVGCRLGKYKGGTCAVAAPFDTVHIP 272
Query: 416 EIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNI 475
E + FQEF++ + ++ +G W+QLTVR
Sbjct: 273 EATKQVVKAFQEFIRSTPYSAYDPETYTGHWKQLTVRTSSR------------------- 313
Query: 476 SEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPA 535
+ M IA V L F G +S GV+++
Sbjct: 314 GQAMAIAYFHPQKLSSEEVAGLKASLVCHFMEGPGKAS--------------GVTSLYFV 359
Query: 536 DAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGD 595
+ R P +G P E + + I + + L F ISP AFFQVNT AAE LY++ +
Sbjct: 360 EEGQR--KTPSQEGLPLE-HMAGDQCIQEDLLGLTFRISPHAFFQVNTPAAEVLYTVIQE 416
Query: 596 WADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVC 655
WA L + + DVCCGTGTIGL LA +V V+GIE+ AV DA NA N K
Sbjct: 417 WAQLDGGSTVLDVCCGTGTIGLALAPKVKRVVGIELCQEAVEDARMNALTNDSKVI-LAI 475
Query: 656 AKAEDVMGSLLKDYLNP 672
KAE++ LL NP
Sbjct: 476 RKAENI-KRLLYVSCNP 491
>gi|296478319|tpg|DAA20434.1| TPA: HpaII tiny fragments locus 9C [Bos taurus]
Length = 610
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 122/367 (33%), Positives = 167/367 (45%), Gaps = 43/367 (11%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
DVVTPL + Y QLE K+ Q+L+KL R S ++S L +L
Sbjct: 157 DVVTPLWAVPYEEQLERKRQECEQVLQKLARXVXAR----ASRAGRCVRSARFLHLAHRL 212
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
G YRNKCEF VG + + TVG L ++ G AV P D ++ +
Sbjct: 213 LGSXPGKSHTEYRNKCEFLVGVGVDGEDNTVGCRLSKYKSGTCAVAAPFDTVHIPGATKQ 272
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
FQEF++ + ++ SG W+QLTVR R + M
Sbjct: 273 VVRAFQEFIRSTPYSAYDPETYSGHWKQLTVRTSRR-------------------GQAMA 313
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
IA + LA+ F G +S GV+ + + R
Sbjct: 314 IAYFHPQNLSPEELAGLKTSLAQYFMEGPGKAS--------------GVTCLYFVEEGQR 359
Query: 541 LLSIPKADGEPEESNDVVEAR-IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
P +G P E V R I + + L F ISP AFFQVNT AAE LY+L DWA L
Sbjct: 360 --KTPSQEGLPLE--HVAGDRCIREDVLGLTFRISPHAFFQVNTAAAEVLYTLIQDWAQL 415
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659
+ + DVCCGTGTIGL LA +V V+G+E++ AV DA NA N + N F C +AE
Sbjct: 416 DAGSTVLDVCCGTGTIGLALARKVKRVVGVELSQEAVEDARVNALDNELSNVEFHCGRAE 475
Query: 660 DVMGSLL 666
+++ +L+
Sbjct: 476 ELVPALV 482
>gi|359074947|ref|XP_002694704.2| PREDICTED: LOW QUALITY PROTEIN: tRNA (uracil-5-)-methyltransferase
homolog A [Bos taurus]
Length = 627
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 122/367 (33%), Positives = 167/367 (45%), Gaps = 43/367 (11%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
DVVTPL + Y QLE K+ Q+L+KL R S ++S L +L
Sbjct: 174 DVVTPLWAVPYEEQLERKRQECEQVLQKLARXVXAR----ASRAGRCVRSARFLHLAHRL 229
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
G YRNKCEF VG + + TVG L ++ G AV P D ++ +
Sbjct: 230 LGSXPGKSHTEYRNKCEFLVGVGVDGEDNTVGCRLSKYKSGTCAVAAPFDTVHIPGATKQ 289
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
FQEF++ + ++ SG W+QLTVR R + M
Sbjct: 290 VVRAFQEFIRSTPYSAYDPETYSGHWKQLTVRTSRR-------------------GQAMA 330
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
IA + LA+ F G +S GV+ + + R
Sbjct: 331 IAYFHPQNLSPEELAGLKTSLAQYFMEGPGKAS--------------GVTCLYFVEEGQR 376
Query: 541 LLSIPKADGEPEESNDVVEAR-IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
P +G P E V R I + + L F ISP AFFQVNT AAE LY+L DWA L
Sbjct: 377 --KTPSQEGLPLE--HVAGDRCIREDVLGLTFRISPHAFFQVNTAAAEVLYTLIQDWAQL 432
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659
+ + DVCCGTGTIGL LA +V V+G+E++ AV DA NA N + N F C +AE
Sbjct: 433 DAGSTVLDVCCGTGTIGLALARKVKRVVGVELSQEAVEDARVNALDNELSNVEFHCGRAE 492
Query: 660 DVMGSLL 666
+++ +L+
Sbjct: 493 ELVPALV 499
>gi|298706853|emb|CBJ25817.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 714
Score = 159 bits (401), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 152/503 (30%), Positives = 221/503 (43%), Gaps = 65/503 (12%)
Query: 181 NLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240
+K L ++ + YK AKK +T G + FE+ EQ A+E+L I + V+ R
Sbjct: 89 QFEKILKNNSVQYKRAKKTPSITHGTLTFETAEQRAVAMEQLRKIVGARGGELMFAVLAR 148
Query: 241 SFDKN------------IKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGL 288
N +K+ + A +A+A AS G + E L
Sbjct: 149 QKQNNDIGRGNKRSARDGDDDGRGGDASKRPRQEAERKTVAQATASLYGVKT---YPEQL 205
Query: 289 AGDGSGLKVKSARD---VVTPLA-HMSYSVQL-EHKKNSIAQMLKKLTRNARKACPNGVS 343
A K K+ D + P+ + + E K+N Q +K+ P +
Sbjct: 206 A-----FKEKTLMDDLFLKLPIVIRNEWDKRFREWKRN---QGMKQGGGGGTLNKPAELR 257
Query: 344 LPEWI-MKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGV 402
P W M R G +P + I+ +P GYRNKCEF++ S T GF G F+ GV
Sbjct: 258 CPAWCRMFKRRDGTVPFDVSPIVPAPEPEGYRNKCEFTLSLSEDGLATAGFRAGRFQAGV 317
Query: 403 -TAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPL 461
VE P DCP V K F++ S P+++ G WR L R RS
Sbjct: 318 PITVESPKDCPQVHGDMKKLCVQMDAFMRSSPFPLYDDATKKGVWRLLVAR--RSAADKE 375
Query: 462 DVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTAL 521
+ + +N ++V +E E ERL K +AGA + L +L
Sbjct: 376 GMAMVVINPTDVKDTEEW---------------KKEEERLVKELSAGAQGEEGT-KLVSL 419
Query: 522 VIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQV 581
+Q++ G+S+ +P+RLL + R+ + + LRF ISP +FFQV
Sbjct: 420 WVQEYAGLSS-PDETSPMRLL--------------WGKERLEEELLGLRFTISPNSFFQV 464
Query: 582 NTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGL--TLAHRVGMVIGIEMNASAVSDA 639
NT AE LY + + +LG D ++ DVCCG GTIG+ A V G ++ A+ DA
Sbjct: 465 NTKGAEALYKVVIENLELGDDAVVLDVCCGAGTIGICAAAAGGAKQVYGSDICLPAIEDA 524
Query: 640 HRNAEINGIKNCRFVCAKAEDVM 662
RNA NGI NC FVC KAE V+
Sbjct: 525 RRNALANGIDNCEFVCGKAEAVV 547
>gi|297461681|ref|XP_002701792.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A [Bos
taurus]
Length = 606
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 120/367 (32%), Positives = 163/367 (44%), Gaps = 64/367 (17%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
DVVTPL + Y QLE K+ Q+L+KL R C + W E
Sbjct: 174 DVVTPLWAVPYEEQLERKRQECEQVLQKLARVRTSICFH------WPFLQTE-------- 219
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
YRNKCEF VG + + TVG L ++ G AV P D ++ +
Sbjct: 220 -----------YRNKCEFLVGVGVDGEDNTVGCRLSKYKSGTCAVAAPFDTVHIPGATKQ 268
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
FQEF++ + ++ SG W+QLTVR R + M
Sbjct: 269 VVRAFQEFIRSTPYSAYDPETYSGHWKQLTVRTSRR-------------------GQAMA 309
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
IA + LA+ F G +S GV+ + + R
Sbjct: 310 IAYFHPQNLSPEELAGLKTSLAQYFMEGPGKAS--------------GVTCLYFVEEGQR 355
Query: 541 LLSIPKADGEPEESNDVVEAR-IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
P +G P E V R I + + L F ISP AFFQVNT AAE LY+L DWA L
Sbjct: 356 --KTPSQEGLPLE--HVAGDRCIREDVLGLTFRISPHAFFQVNTAAAEVLYTLIQDWAQL 411
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659
+ + DVCCGTGTIGL LA +V V+G+E++ AV DA NA N + N F C +AE
Sbjct: 412 DAGSTVLDVCCGTGTIGLALARKVKRVVGVELSQEAVEDARVNALDNELSNVEFHCGRAE 471
Query: 660 DVMGSLL 666
+++ +L+
Sbjct: 472 ELVPALV 478
>gi|119623237|gb|EAX02832.1| chromosome X open reading frame 34, isoform CRA_b [Homo sapiens]
Length = 385
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 111/330 (33%), Positives = 154/330 (46%), Gaps = 41/330 (12%)
Query: 340 NGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNF 398
NGVS+ + KS L C L I+ SP++NGYRNK FSV P TVGF LG +
Sbjct: 3 NGVSVTTAVPKSER---LSCLLHPIIPSPVINGYRNKSTFSVNRGPDGNPKTVGFYLGTW 59
Query: 399 REGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPG 458
R+G + N+ E + A ++ FL+QS L F G+WR+LTVR
Sbjct: 60 RDGNVVCVQSNHLKNIPEKHSQVAQYYEVFLRQSPLEPCLVFHEGGYWRELTVRTNSQ-- 117
Query: 459 KPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPL 518
M I ++ + E + + F G A+ L
Sbjct: 118 -----------------GHTMAIITFHPQKLSQEELHVQKEIVKEFFIRGPGAACG---L 157
Query: 519 TALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAF 578
T+L Q+ ++ + +P +LL GEP I + + +L+ ISP AF
Sbjct: 158 TSLYFQE-STMTRCSHQQSPYQLLF-----GEP---------YIFEELLSLKIRISPDAF 202
Query: 579 FQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSD 638
FQ+NT AE LY G+ + DT+L D+CCGTG IGL+LA V+GIE+ AV D
Sbjct: 203 FQINTAGAEMLYRTVGELTGVNSDTILLDICCGTGVIGLSLAQHTSRVLGIELLEQAVED 262
Query: 639 AHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
A A NGI N F +AE ++ LLK
Sbjct: 263 ARWTAAFNGITNSEFHTGQAEKILPGLLKS 292
>gi|149640047|ref|XP_001513281.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog
[Ornithorhynchus anatinus]
Length = 481
Score = 157 bits (396), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 122/366 (33%), Positives = 167/366 (45%), Gaps = 43/366 (11%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
DVVTPL + Y QL+ K + ++L+ L R LPE + E LP L
Sbjct: 63 DVVTPLWRLDYQEQLKVKFEAQKRVLQTLASRLRAR-----GLPEPGTVAPESDELPWLL 117
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
I+ SP+++ YRNK FSV P TVG LG R+ N+ E +
Sbjct: 118 HPIIPSPVISEYRNKSTFSVNRGPDGNPKTVGQYLGTGRDRNIVCVRADQLKNIPEKHKQ 177
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
A ++ FLQ+S L F G WR+L VR +VM
Sbjct: 178 VAQCYEAFLQKSPLGPCLLFHRGGHWRELIVRTNAR-------------------GQVMA 218
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
I + + ++ E + + F G A L++L Q+ ++ + +P +
Sbjct: 219 IITFHPQQLNQEELWAQKEAVREFFTKGPGAVCG---LSSLYFQEST-MTRCSHRQSPYQ 274
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
LLS GEP I + +S L F ISP AFFQ+NT AE LY G + L
Sbjct: 275 LLS-----GEPY---------ILEELSGLTFRISPEAFFQINTPGAELLYQTEGRLSGLN 320
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
P T+L D+CCGTG IGL+LA RV V+G+E+ AV DA A NGI NC F AE
Sbjct: 321 PATVLLDICCGTGAIGLSLAPRVSRVLGVELIEQAVEDARWTAAFNGISNCEFHAGPAEK 380
Query: 661 VMGSLL 666
++ LL
Sbjct: 381 IVPQLL 386
>gi|261326189|emb|CBH09015.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 559
Score = 154 bits (390), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 107/340 (31%), Positives = 168/340 (49%), Gaps = 58/340 (17%)
Query: 348 IMKSREIGG---LPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTA 404
+M++ +GG GI SP GYRN +F+ G++ +PT+GF+ G+ +G+ A
Sbjct: 159 VMRAITLGGGTEYEKLFTGIHPSPHQTGYRNHVQFTFGFTEAGEPTIGFLKGSVIDGIYA 218
Query: 405 VEEPVD------CPNVSEIACKYASIFQEF--LQQSDLPVWNRFKNSGFWRQLTVREGRS 456
VE ++ P +A +++ F L++ L V+++ K GFWR+L VR
Sbjct: 219 VESVLEKDIETVNPLAKLVADAVMTVYHLFKPLEKGGLEVYDKIKEEGFWRRLQVRH--- 275
Query: 457 PGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS---------EFERLAKAFAA 507
N+ + EVM+ A++ + + + +V S + E L K A
Sbjct: 276 ------------NV----LGEVMVDAEMDTESVAEDIVASVKAQLVAALQGETLRKKLCA 319
Query: 508 GATASSPSLPLTALVIQDHQGVS-NVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSI 566
+ ++ + +Q H G N AP +AP +L A + + +
Sbjct: 320 AHGKDTANI----VSVQYHHGTGMNPAPPEAPRHVL--------------FGSATLTEHL 361
Query: 567 SNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMV 626
L+F +SPT+FFQVNT E L A+L P+T L D+CCGTGTIG+ LA V V
Sbjct: 362 LGLQFELSPTSFFQVNTAGMELLLRETVAVAELTPETTLLDLCCGTGTIGIALAKHVKRV 421
Query: 627 IGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
IGIE+ SAV DA NAE NG++N F C + E ++ S++
Sbjct: 422 IGIELVESAVRDARLNAERNGVRNATFNCGRVEHLLPSVI 461
Score = 42.4 bits (98), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 27/33 (81%)
Query: 750 NVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
++VAI+DPPR G+ PTV+K +R A ++RL++I
Sbjct: 471 DIVAILDPPRAGVTPTVLKWIRGTATIRRLVYI 503
>gi|3183977|emb|CAA39515.1| protein Htf9C [Mus musculus]
Length = 677
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 109/328 (33%), Positives = 153/328 (46%), Gaps = 37/328 (11%)
Query: 340 NGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNF 398
N LP +++ ++ C LEG+ SP YRNKCEF VG + K TVG LG +
Sbjct: 260 NRALLPWLLLQRQQHNKACCPLEGVKPSPQQTEYRNKCEFLVGVGVDGKDNTVGCRLGKY 319
Query: 399 REGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPG 458
+ G AV P D ++ E + FQEF++ + ++ +G W+QLTVR
Sbjct: 320 KGGTCAVAAPFDTVHIPEATKQVVKAFQEFIRSTPYSAYDPETYTGHWKQLTVRTS---- 375
Query: 459 KPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPL 518
+ + M IA V L F G +S
Sbjct: 376 ---------------SRGQAMAIAYFHPQKLSSEEVAGLKASLVCHFMEGPGKAS----- 415
Query: 519 TALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAF 578
GV+++ + R P +G P E + + I + + L F ISP AF
Sbjct: 416 ---------GVTSLYFVEEGQR--KTPSQEGLPLE-HMAGDQCIQEDLLGLTFRISPHAF 463
Query: 579 FQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSD 638
FQVNT AAE LY++ +WA L + + DVCCGTGTIGL LA +V V+GIE+ AV D
Sbjct: 464 FQVNTPAAEVLYTVIQEWAQLDGGSTVLDVCCGTGTIGLALAPKVKRVVGIELCQEAVED 523
Query: 639 AHRNAEINGIKNCRFVCAKAEDVMGSLL 666
A NA N + N F C +AED++ L+
Sbjct: 524 ARMNALTNELSNVEFHCGRAEDLVPGLV 551
>gi|407401660|gb|EKF28948.1| hypothetical protein MOQ_007288 [Trypanosoma cruzi marinkellei]
Length = 568
Score = 154 bits (388), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 114/326 (34%), Positives = 159/326 (48%), Gaps = 43/326 (13%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVD------CPNVSE 416
G+ SP + GYRN + S GY+ +P++GF+ G EG A+ + P +
Sbjct: 181 GVHASPELTGYRNHVQLSFGYTETGEPSIGFLKGAIIEGTCAIHSALGKDIVTMNPLARQ 240
Query: 417 IACKYASIFQEFL--QQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+A S+ FL ++ L V+++ K GFWR+L VR +D+E L++ +E +
Sbjct: 241 VAEAVMSVCHLFLLPEKGGLMVFDKVKQQGFWRKLQVRHNVLGEVMVDME-LDIESAEAS 299
Query: 475 I-SEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVS-NV 532
+ SEV T ++SE R +G + T + Q H G N
Sbjct: 300 VVSEV--------KTHLTNTLSSEKLRAELRMISGKETA------TVVSAQYHHGTGINS 345
Query: 533 APADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSL 592
+ AD P +L G P + + + LRF +SPT+FFQVNT E L
Sbjct: 346 SLADEPRHILF-----GTPT---------LTEHLLGLRFELSPTSFFQVNTSGMELLLCE 391
Query: 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCR 652
A LGP T L D+CCGTG IGLTLA V VIGIE+ SAV DA +NA+ N I N
Sbjct: 392 TAKVAALGPKTTLLDLCCGTGVIGLTLAKHVKRVIGIELVESAVRDARQNAKRNDITNVT 451
Query: 653 FVCAKAEDVMGSLLKDYLNPLREEDE 678
F C + E LL D +N L EED+
Sbjct: 452 FCCGRVEH----LLPDVINSLPEEDK 473
>gi|338729374|ref|XP_001492969.3| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog [Equus
caballus]
Length = 581
Score = 152 bits (384), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 117/360 (32%), Positives = 167/360 (46%), Gaps = 49/360 (13%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
DVVTPL +SY QL+ K + ++L++L + NGVS+ KS+ GL C L
Sbjct: 203 DVVTPLWRLSYEEQLKVKFEAQKKILQRLESYLQML--NGVSVTTAAPKSK---GLCCLL 257
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
I+ SP+++GYRNK FSV P TVG+ LG +R+G N+ E +
Sbjct: 258 HPIIPSPVIDGYRNKSTFSVNRGPDGNPKTVGYYLGTWRDGNIICVRSNQLKNMPEKHNQ 317
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
A ++ FL+QS L F G+WR+LTVR M
Sbjct: 318 VAQYYEVFLRQSPLEPCLLFHEGGYWRELTVRTNSQ-------------------GHTMA 358
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
I + + E + + F G A LT+L Q+ ++ + +P +
Sbjct: 359 IITFHPQKLTQEELCVQKETVKEFFTKGPGAVC---DLTSLYFQE-STMTRCSHQQSPYQ 414
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
LL GEP D++ +I ISP AFFQ+NT AE LY G+ + +
Sbjct: 415 LLF-----GEPHIFEDLLGLKIR---------ISPDAFFQINTSGAEMLYQTVGELSGVN 460
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN------GIKNCRFV 654
+T+L D+CCGTG IGL+LA V+GIE+ AV DA A N I+NCR +
Sbjct: 461 SNTILLDICCGTGVIGLSLAQYTSQVLGIELVEQAVEDARWTAAFNDHRVIQAIRNCRAI 520
>gi|115504421|ref|XP_001219003.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|83642485|emb|CAJ16516.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 559
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 105/340 (30%), Positives = 167/340 (49%), Gaps = 58/340 (17%)
Query: 348 IMKSREIGG---LPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTA 404
+M++ +GG GI SP GYRN +F+ G++ + T+GF+ G+ +G+ A
Sbjct: 159 VMRAITLGGGSEYEKLFTGIHPSPHQTGYRNHVQFTFGFTEAGEATIGFLKGSVIDGIYA 218
Query: 405 VEEPVD------CPNVSEIACKYASIFQEF--LQQSDLPVWNRFKNSGFWRQLTVREGRS 456
+E ++ P +A +++ F L++ L V+++ K GFWR+L VR
Sbjct: 219 IESVLEKDIETVNPLAKLVADAVMTVYHLFKPLEKGGLEVYDKIKEEGFWRRLQVRH--- 275
Query: 457 PGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS---------EFERLAKAFAA 507
N+ + EVM+ A++ + + + +V S + E L K A
Sbjct: 276 ------------NV----LGEVMVDAEMDTESVAEDIVASVKAQLVAALQGETLRKKLCA 319
Query: 508 GATASSPSLPLTALVIQDHQGVS-NVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSI 566
+ ++ + +Q H G N AP +AP +L A + + +
Sbjct: 320 AHGKDTANI----VSVQYHHGTGMNPAPPEAPRHVL--------------FGSATLTEHL 361
Query: 567 SNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMV 626
L+F +SPT+FFQVNT E L A+L P+T L D+CCGTGTIG+ LA V V
Sbjct: 362 LGLQFELSPTSFFQVNTAGMELLLRETVAVAELTPETTLLDLCCGTGTIGIALAKHVKRV 421
Query: 627 IGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
IGIE+ SAV DA NAE NG++N F C + E ++ S++
Sbjct: 422 IGIELVESAVRDARLNAERNGVRNATFNCGRVEHLLPSVI 461
Score = 44.3 bits (103), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 28/34 (82%)
Query: 749 KNVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
K++VAI+DPPR G+ PTV+K +R A ++RL++I
Sbjct: 470 KDIVAILDPPRAGVTPTVLKWIRGTATIRRLVYI 503
>gi|354474931|ref|XP_003499683.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog [Cricetulus
griseus]
Length = 602
Score = 149 bits (375), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 112/368 (30%), Positives = 167/368 (45%), Gaps = 62/368 (16%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
DVVTPL +SY QL+ K + ++++ L + L
Sbjct: 203 DVVTPLWRLSYEEQLKVKFEAQKKIVQTLESYLQ------------------------VL 238
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
G+ G+P+++GYRNK FSV P TVG+ G +R+G N+ E +
Sbjct: 239 HGVSGTPIIDGYRNKSTFSVNRGPDGNPKTVGYYQGTWRDGNIVCVPCSHLKNIPEKHSQ 298
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
A ++ FL+QS + F G WR+LTVR S G + + + +S+ L
Sbjct: 299 VAQYYEVFLRQSSVEPCLLFHEGGHWRELTVRTN-SQGHTMAI----ITFHPQGLSQEEL 353
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
AQ T D F G A LT+L Q+ ++ + +P +
Sbjct: 354 CAQ--KVTLKD------------FFTQGPGAVC---ELTSLYFQE-STMTRCSHQQSPYQ 395
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
LL GEP I + + L+ ISP AFFQ+NT AE LY G+ + +
Sbjct: 396 LLF-----GEPH---------IFEDLLGLKIRISPDAFFQINTAGAELLYQTIGELSGVN 441
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
+++L D+CCGTG IGL+LA V+G+E+ AV DA A NG+ NC F +AE
Sbjct: 442 SNSILLDICCGTGVIGLSLAQCASQVLGVELVEQAVDDARWTAAFNGVTNCEFHAGRAEK 501
Query: 661 VMGSLLKD 668
++ LL+
Sbjct: 502 ILPQLLRS 509
>gi|157868729|ref|XP_001682917.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68126373|emb|CAJ04501.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 602
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 106/319 (33%), Positives = 156/319 (48%), Gaps = 40/319 (12%)
Query: 360 KLEGILGSPLVNGYRNKCEFSVGYSLQ-AKPTVGFMLGNFREGVTAVEEPVDCPN----- 413
+ GIL SP+ GYRN S G+ + P +GF G+ EG AV P P+
Sbjct: 177 RFAGILTSPMTEGYRNHVNLSFGFCADGSTPALGFQQGSLVEGTAAVL-PATLPDKDIVT 235
Query: 414 ----VSEIACKYASIFQEF--LQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLE 467
+A + EF + + L V+++ K SGFWR+L VR +DVE
Sbjct: 236 MNSAAKVVAAALMGVCMEFRDVARGALDVFDKVKASGFWRKLQVRHNVKGEVMMDVE--- 292
Query: 468 VNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQ 527
V+++ + Q F SE R+ A G + ++ + +L H
Sbjct: 293 VDVASTTADVWTAVRQRLVEVF-----TSEEMRVKLVAATGLSTAA----VVSLQCHTHT 343
Query: 528 GVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAE 587
G+S++ P D P +L G P + + ++ L F +SPTAFFQVNT E
Sbjct: 344 GISSL-PLDVPREVLY-----GAPT---------LTEYLAELCFELSPTAFFQVNTPGME 388
Query: 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEING 647
K+ + + A+L T L D+C GTGTIGLTL+ V VIGIE+ SAV++A RNA+ NG
Sbjct: 389 KMLTKVAEVAELSTGTTLLDLCSGTGTIGLTLSKHVKRVIGIELVESAVANARRNAQQNG 448
Query: 648 IKNCRFVCAKAEDVMGSLL 666
I N F C + E ++ S++
Sbjct: 449 ITNAEFHCGRVEHLLPSVI 467
>gi|71420165|ref|XP_811388.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70876047|gb|EAN89537.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 568
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 111/326 (34%), Positives = 162/326 (49%), Gaps = 43/326 (13%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVD------CPNVSE 416
G+ SP + GYRN + S GYS +P++GF+ G EG A+ + P +
Sbjct: 181 GVHVSPELTGYRNHVQLSFGYSETGEPSIGFLKGAMIEGTCAIHSALGKDIVTMNPLAKQ 240
Query: 417 IACKYASIFQEFL--QQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+A S+ FL ++ L V+++ K GFWR+L VR +D+E L+++ +E +
Sbjct: 241 VAEAVMSVCHLFLLPEKGGLMVFDKVKQQGFWRKLQVRHNVLGEVMVDME-LDIDSAEAS 299
Query: 475 I-SEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVS-NV 532
+ +EV + +++ F + + + + TAS S Q H G +
Sbjct: 300 VVNEVKM--HLTNTLFSEGLRAK-----LRMISGKETASVVS-------AQYHHGTGISS 345
Query: 533 APADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSL 592
+ AD P +L G P + + + LRF +SPT+FFQVNT E L
Sbjct: 346 SSADEPRHILF-----GTPT---------LTEHLLGLRFELSPTSFFQVNTSGMELLLCE 391
Query: 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCR 652
A LGP T L D+CCGTG IGLTLA V VIGIE+ SAV+DA +NA+ N I N
Sbjct: 392 TAKVAALGPKTTLLDLCCGTGVIGLTLAKHVKRVIGIELVESAVNDARQNAKRNDIANVT 451
Query: 653 FVCAKAEDVMGSLLKDYLNPLREEDE 678
F + E LL D +N L EED+
Sbjct: 452 FCSGRVEH----LLPDIINSLPEEDK 473
>gi|71415097|ref|XP_809627.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70874038|gb|EAN87776.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 568
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 110/325 (33%), Positives = 159/325 (48%), Gaps = 41/325 (12%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVD------CPNVSE 416
G+ SP + GYRN + S GYS +P++GF+ G EG A+ + P +
Sbjct: 181 GVHVSPELTGYRNHVQLSFGYSETGEPSIGFLKGAMIEGTCAIHSALGKDIVTMNPLARQ 240
Query: 417 IACKYASIFQEFL--QQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+A S+ FL ++ L V+++ K GFWR+L VR +D+E L+++ +E +
Sbjct: 241 VAEAVMSVCHLFLLPEKGGLMVFDKVKQQGFWRKLQVRHNVLGEVMVDME-LDIDSAEAS 299
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVS-NVA 533
+ +++V + + SE R +G +S + Q H G + +
Sbjct: 300 V-----VSEVKTHLIK--TLFSEGLRAKLRMISGKETAS------VVSAQYHHGTGISSS 346
Query: 534 PADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLG 593
D P +L G P + + + LRF +SPT+FFQVNT E L
Sbjct: 347 SVDEPRHILF-----GTPT---------LTEHLLGLRFELSPTSFFQVNTSGMELLLCET 392
Query: 594 GDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRF 653
A LGP T L D+CCGTG IGLTLA V VIGIE+ SAVSDA +NA+ N I N F
Sbjct: 393 AKVAALGPKTTLLDLCCGTGVIGLTLAKHVKRVIGIELVESAVSDARQNAKRNDIANVTF 452
Query: 654 VCAKAEDVMGSLLKDYLNPLREEDE 678
+ E LL D +N L EED+
Sbjct: 453 CSGRVEH----LLPDIINSLPEEDK 473
>gi|57997161|emb|CAI46112.1| hypothetical protein [Homo sapiens]
Length = 459
Score = 146 bits (369), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 100/302 (33%), Positives = 140/302 (46%), Gaps = 38/302 (12%)
Query: 368 PLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
P++NGYRNK FSV P TVGF LG +R+G + N+ E + A ++
Sbjct: 102 PVINGYRNKSTFSVNRGPDGNPKTVGFYLGTWRDGNVVCVQSNHLKNIPEKHSQVAQYYE 161
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
FL+QS L F G+WR+LTVR M I
Sbjct: 162 VFLRQSPLEPCLVFHEGGYWRELTVRTNSQ-------------------GHTMAIITFHP 202
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
++ + E + + F G A+ LT+L Q+ ++ + +P +LL
Sbjct: 203 QKLSQEELHVQKEIVKEFFIRGPGAACG---LTSLYFQE-STMTRCSHQQSPYQLLF--- 255
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
GEP I + + +L+ ISP AFFQ+NT AE LY G+ + DT+L
Sbjct: 256 --GEP---------YIFEELLSLKIRISPDAFFQINTAGAEMLYRTVGELTGVNSDTILL 304
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
D+CCGTG IGL+LA V+GIE+ AV DA A NGI N F +AE ++ LL
Sbjct: 305 DICCGTGVIGLSLAQHTSRVLGIELLEQAVEDARWTAAFNGITNSEFHTGQAEKILPGLL 364
Query: 667 KD 668
K
Sbjct: 365 KS 366
>gi|118369094|ref|XP_001017752.1| hypothetical protein TTHERM_00437560 [Tetrahymena thermophila]
gi|89299519|gb|EAR97507.1| hypothetical protein TTHERM_00437560 [Tetrahymena thermophila
SB210]
Length = 648
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 104/369 (28%), Positives = 171/369 (46%), Gaps = 47/369 (12%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGG-LPCKLE 362
V PL Y QLE KK +++K + A+ + + S P W+ + +I L C +
Sbjct: 221 VCPLWKTPYEEQLEIKKKDFIEIIKNFQKRAKDSIRSDESTPIWVTREPKITDFLECDEQ 280
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYA 422
YRNK EF++G + + VG+ NF +G+ +++ S+ + A
Sbjct: 281 YRFH------YRNKTEFTIGLNHLGEIKVGYNRTNFDKGIAFIDDANKNCVSSKESVILA 334
Query: 423 SIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIA 482
+ +++++ LPV++RF + GFWR VR+ E+ I+ V +
Sbjct: 335 QQLENYIKETGLPVYDRFVHQGFWRYFVVRQS-------------FKTKEILINIVAKGS 381
Query: 483 QVSSATFDDAVVNSEFER----LAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAP 538
S AT +FE+ L K F + + +T++ Q ++ S+ P D
Sbjct: 382 YCSDAT--------QFEQIKQGLIKIFQKESLPENFEYNITSIGFQSYEAPSDSIPQDGQ 433
Query: 539 LRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWA- 597
+ ++ ++ E +I F IS AF QV+T E+LY L G
Sbjct: 434 IDIIYGSRSYKE--------------NILGKTFDISANAFLQVHTPQCERLYKLIGSLTG 479
Query: 598 DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAK 657
+L T+ D+C G GTIG+ LA+ VIGIEM +A +DA N E NGI N + +C+K
Sbjct: 480 ELNEKTIFLDICSGIGTIGICLANSAKEVIGIEMVETACNDAKINIEQNGITNYKVICSK 539
Query: 658 AEDVMGSLL 666
EDV+ ++
Sbjct: 540 VEDVINEIV 548
>gi|407841046|gb|EKG00634.1| hypothetical protein TCSYLVIO_008409 [Trypanosoma cruzi]
Length = 568
Score = 146 bits (368), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 109/325 (33%), Positives = 160/325 (49%), Gaps = 41/325 (12%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVD------CPNVSE 416
G+ SP + GYRN + S GYS + ++GF+ G EG A+ + P +
Sbjct: 181 GVHVSPELTGYRNHVQLSFGYSETGESSIGFLKGAMIEGTCAIHSALGKDIVTMNPLAKQ 240
Query: 417 IACKYASIFQEFL--QQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+A S+ FL ++ L V+++ K GFWR+L VR +D+E L+++ +E +
Sbjct: 241 VAEAVMSVCHLFLLPEKGGLMVFDKVKQQGFWRKLQVRHNVLGEVMVDME-LDIDSAEAS 299
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVS-NVA 533
+ +++V + + + SE R + +G +S + Q H G + +
Sbjct: 300 V-----VSEVKTHLIN--TLFSEGLRAKLSMISGKETAS------VVSAQYHHGTGISSS 346
Query: 534 PADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLG 593
D P +L G P + + + LRF +SPT+FFQVNT E L
Sbjct: 347 SVDEPRHILF-----GTPT---------LTEHLLGLRFELSPTSFFQVNTSGMELLLCET 392
Query: 594 GDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRF 653
A LGP T L D+CCGTG IGLTLA V VIGIE+ SAVSDA +NA+ N I N F
Sbjct: 393 AKVAALGPKTTLLDLCCGTGVIGLTLAKHVKRVIGIELVESAVSDARQNAKRNDIANATF 452
Query: 654 VCAKAEDVMGSLLKDYLNPLREEDE 678
+ E LL D +N L EED+
Sbjct: 453 CSGRVEH----LLPDIINSLPEEDK 473
>gi|269784678|ref|NP_001161443.1| tRNA (uracil(54)-C(5))-methyltransferase homolog isoform b [Homo
sapiens]
gi|119623242|gb|EAX02837.1| chromosome X open reading frame 34, isoform CRA_e [Homo sapiens]
Length = 459
Score = 146 bits (368), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 100/302 (33%), Positives = 140/302 (46%), Gaps = 38/302 (12%)
Query: 368 PLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
P++NGYRNK FSV P TVGF LG +R+G + N+ E + A ++
Sbjct: 102 PVINGYRNKSTFSVNRGPDGNPKTVGFYLGTWRDGNVVCVQSNHLKNIPEKHSQVAQYYE 161
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
FL+QS L F G+WR+LTVR M I
Sbjct: 162 VFLRQSPLEPCLVFHEGGYWRELTVRTNSQ-------------------GHTMAIITFHP 202
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
++ + E + + F G A+ LT+L Q+ ++ + +P +LL
Sbjct: 203 QKLSQEELHVQKEIVKEFFIRGPGAACG---LTSLYFQE-STMTRCSHQQSPYQLLF--- 255
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
GEP I + + +L+ ISP AFFQ+NT AE LY G+ + DT+L
Sbjct: 256 --GEP---------YIFEELLSLKIRISPDAFFQINTAGAEMLYRTVGELTGVNSDTILL 304
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
D+CCGTG IGL+LA V+GIE+ AV DA A NGI N F +AE ++ LL
Sbjct: 305 DICCGTGVIGLSLAQHTSRVLGIELLEQAVEDARWTAAFNGITNSEFHTGQAEKILPGLL 364
Query: 667 KD 668
K
Sbjct: 365 KS 366
>gi|398014635|ref|XP_003860508.1| hypothetical protein, conserved [Leishmania donovani]
gi|322498729|emb|CBZ33802.1| hypothetical protein, conserved [Leishmania donovani]
Length = 603
Score = 145 bits (366), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 108/327 (33%), Positives = 156/327 (47%), Gaps = 56/327 (17%)
Query: 360 KLEGILGSPLVNGYRNKCEFSVGYSLQ-AKPTVGFMLGNFREGVTAVEEPVDCPN----- 413
+ GIL SP+ GYRN S G+ + P +GF G+ EG AV P P+
Sbjct: 177 RFAGILTSPVTEGYRNHVNLSFGFCADGSTPALGFQQGSLVEGTAAVL-PATLPDKDIVT 235
Query: 414 ----VSEIACKYASIFQEF--LQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLE 467
+A + EF + + L V+N+ K SGFWR+L VR
Sbjct: 236 MNSAAKVVAAALMDVCMEFRDVAKGGLDVFNKVKASGFWRKLQVRH-------------- 281
Query: 468 VNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFA--------AGATASSPSLPLT 519
N+ EVM+ + +A+ V + +RL + FA AT S + +
Sbjct: 282 -NVK----GEVMMDVEADAASTTADVWAAVRQRLVEVFACEEMRVKLVAATGLS-TAAVV 335
Query: 520 ALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFF 579
+L H G+S++ P D P +L G P + + ++ L F +SPTAFF
Sbjct: 336 SLQCHTHTGISSL-PLDVPREVLY-----GAPT---------LTEYLAGLCFELSPTAFF 380
Query: 580 QVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDA 639
QVNT E + + A+L T L D+C GTGTIGLTL+ V VIGIE+ SAV++A
Sbjct: 381 QVNTPGMETMMMKVAEVAELSAGTTLLDLCSGTGTIGLTLSKHVKRVIGIELVESAVANA 440
Query: 640 HRNAEINGIKNCRFVCAKAEDVMGSLL 666
RNA+ NGI N F C + E ++ S++
Sbjct: 441 RRNAQQNGITNAEFHCGRVEHLLPSVI 467
>gi|291408093|ref|XP_002720421.1| PREDICTED: TRM2 tRNA methyltransferase 2 homolog B isoform 2
[Oryctolagus cuniculus]
Length = 459
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 100/302 (33%), Positives = 138/302 (45%), Gaps = 38/302 (12%)
Query: 368 PLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
P++NGYRNK FSV P TVG+ LG +R+G + N+ E + A ++
Sbjct: 102 PVINGYRNKSTFSVNRGPDGNPKTVGYYLGTWRDGNVVCVQSSHLKNIPEKHNQVAQYYE 161
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
FL+QS L F G WR+LTVR M I
Sbjct: 162 VFLRQSPLEPCLLFHEGGHWRELTVRTNHQ-------------------GHTMAIVTFHP 202
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
+ + E + + F G A LT+L Q+ ++ + +P +LL
Sbjct: 203 QELSQEELCVQKEAIKEFFLRGPGAVCD---LTSLYFQE-STMTRCSHQQSPYQLLF--- 255
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
GEP I + + L+ ISP AFFQVNT AE LY G+ + + +T+L
Sbjct: 256 --GEP---------YIFEGLLGLKIRISPDAFFQVNTAGAEMLYQTVGELSGVNANTILL 304
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
D+CCGTG IGL+LA V+GIE+ AV DA A NGI NC F +AE ++ LL
Sbjct: 305 DICCGTGAIGLSLAQHASQVLGIELVEQAVEDARWTAAFNGITNCEFHAGRAEKILPWLL 364
Query: 667 KD 668
K
Sbjct: 365 KS 366
>gi|401421472|ref|XP_003875225.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322491461|emb|CBZ26733.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 604
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 174/383 (45%), Gaps = 72/383 (18%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+T H+ QL+ KK +++++ P GV + G
Sbjct: 137 LTQYEHLHMEEQLDRKKRHCLNVMQRI-------LPAGV---------YGYAAFQDRFAG 180
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAK-PTVGFMLGNFREGVTAVEEPVDCPNVS------- 415
IL SP+ GYRN S G+ P +GF G+ EG AV P P+ S
Sbjct: 181 ILTSPVTVGYRNHVNLSFGFCTDGNTPALGFQQGSLVEGTAAVL-PATLPDKSIVTMNSA 239
Query: 416 --EIACKYASIFQEF--LQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNIS 471
+A + EF + + L V+N+ K SGFWR+L VR N+
Sbjct: 240 AKVVAAALMDVCMEFRDVAKGGLDVFNKVKASGFWRKLQVRH---------------NVK 284
Query: 472 EVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAA--------GATASSPSLPLTALVI 523
EVM+ + +A+ V + +RL + FA+ AT S + + +L
Sbjct: 285 ----GEVMMDVEADAASTTANVWTAVRQRLVEVFASEEIRVKLVAATGLS-TAAVVSLQC 339
Query: 524 QDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNT 583
H G+S++ P D P +L G P + + ++ L F +SPTAFFQVNT
Sbjct: 340 HTHTGISSL-PLDVPREVLY-----GAPT---------LTEYLAGLCFELSPTAFFQVNT 384
Query: 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNA 643
E + + + A+L T L D+C GTGTIGLTL+ V VIGIE+ SAV++A RNA
Sbjct: 385 PGMETMLTKVAEVAELSAGTTLLDLCSGTGTIGLTLSKHVKRVIGIELVESAVANARRNA 444
Query: 644 EINGIKNCRFVCAKAEDVMGSLL 666
+ N I N F C + E ++ S++
Sbjct: 445 QQNSITNAEFHCGRVEHLLPSVI 467
>gi|146085495|ref|XP_001465291.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134069388|emb|CAM67541.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 603
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 108/327 (33%), Positives = 156/327 (47%), Gaps = 56/327 (17%)
Query: 360 KLEGILGSPLVNGYRNKCEFSVGYSLQ-AKPTVGFMLGNFREGVTAVEEPVDCPN----- 413
+ GIL SP+ GYRN S G+ + P +GF G+ EG AV P P+
Sbjct: 177 RFAGILTSPVTEGYRNHVNLSFGFCADGSTPALGFQQGSLVEGTAAVL-PATLPDKDIVT 235
Query: 414 ----VSEIACKYASIFQEF--LQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLE 467
+A + EF + + L V+N+ K SGFWR+L VR
Sbjct: 236 MNSAAKVVAAALMDMCMEFRDVAKGGLDVFNKVKASGFWRKLQVRH-------------- 281
Query: 468 VNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFA--------AGATASSPSLPLT 519
N+ EVM+ + +A+ V + +RL + FA AT S + +
Sbjct: 282 -NVK----GEVMMDVEADAASTTADVWAAVRQRLVEVFACEEMRVKLVAATGLS-TAAVV 335
Query: 520 ALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFF 579
+L H G+S++ P D P +L G P + + ++ L F +SPTAFF
Sbjct: 336 SLQCHTHTGISSL-PLDVPREVLY-----GAPT---------LTEYLAGLCFELSPTAFF 380
Query: 580 QVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDA 639
QVNT E + + A+L T L D+C GTGTIGLTL+ V VIGIE+ SAV++A
Sbjct: 381 QVNTPGMETMMMKVAEVAELSAGTTLLDLCSGTGTIGLTLSKHVKRVIGIELVESAVANA 440
Query: 640 HRNAEINGIKNCRFVCAKAEDVMGSLL 666
RNA+ NGI N F C + E ++ S++
Sbjct: 441 RRNAQQNGITNTEFHCGRVEHLLPSVI 467
>gi|296235982|ref|XP_002763131.1| PREDICTED: tRNA (uracil(54)-C(5))-methyltransferase homolog isoform
2 [Callithrix jacchus]
Length = 459
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 98/302 (32%), Positives = 138/302 (45%), Gaps = 38/302 (12%)
Query: 368 PLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
P++NGYRNK FSV P TVG+ LG +R G + N+ E + A ++
Sbjct: 102 PVINGYRNKSTFSVNRGPDGNPKTVGYYLGTWRGGNIVCVQSNHLKNIPEKHSQVAQYYE 161
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
FL+QS + F G+WR+L VR M I +
Sbjct: 162 IFLRQSPMEPCLVFHEGGYWRELIVRTNSQ-------------------GHTMAIITLHP 202
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
+ + E + + F G A+ LT+L Q+ ++ + +P LL
Sbjct: 203 QKLSQEELRGQKEIVKEFFIKGPGAACD---LTSLYFQE-STMTRCSHQQSPFELLF--- 255
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
GEP I + + +L+ ISP AFFQ+NT AE LY G+ A + DT+L
Sbjct: 256 --GEP---------YIFEELLSLKIRISPDAFFQINTAGAEMLYRTVGELAGVNSDTILL 304
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
D+CCGTG IGL+LA V+GIE+ AV DA A NGI N F +AE ++ LL
Sbjct: 305 DICCGTGVIGLSLAQHTSQVLGIELVEQAVEDARWTAAYNGITNSEFHTGRAEKILPGLL 364
Query: 667 KD 668
K
Sbjct: 365 KS 366
>gi|432903503|ref|XP_004077162.1| PREDICTED: tRNA (uracil(54)-C(5))-methyltransferase homolog-B-like
[Oryzias latipes]
Length = 491
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 120/386 (31%), Positives = 169/386 (43%), Gaps = 74/386 (19%)
Query: 302 DVVTPLAHMSYSVQLE----HKKNSIAQMLKKLTRNARKACP--NGVSLPEWIMKSREIG 355
D VTPL +SY QLE H++ +++Q++ L+ + + + P N ++ P
Sbjct: 67 DAVTPLWRLSYDEQLELKQKHQETTLSQLVGHLSGDPKSSSPVKNKLTFP---------- 116
Query: 356 GLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNV 414
L IL SP+ +GYRNK FSV TVGF LG ++G N+
Sbjct: 117 -----LLPILPSPVRDGYRNKSTFSVNRGADGNTKTVGFYLGTGKQGNIVCVNGDHLLNM 171
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
E A +Q+F++QS L F + G WR++TVR +
Sbjct: 172 PEKHKLVARCYQDFIRQSPLDPCLLFHSGGHWREVTVRTNAT------------------ 213
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
M I T V L F G + L +L Q+ ++
Sbjct: 214 -GHTMAIVYFHPQTLTPEEVAVHQTDLVDYFMRGPGSVCQ---LDSLFFQE-SSMTRCTH 268
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
+P +LL G+P I++++ +F ISP AFFQVN AAE LY G
Sbjct: 269 EKSPYQLLY-----GQPH---------IYETVLGFKFRISPDAFFQVNQGAAEVLY---G 311
Query: 595 DWADL------------GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRN 642
DL P L DVCCGTG IG+T + RV VIGIE+ AV DA N
Sbjct: 312 TLRDLISANTEKGEKQGKPTDTLLDVCCGTGAIGITTSPRVEKVIGIELIEQAVEDAVHN 371
Query: 643 AEINGIKNCRFVCAKAEDVMGSLLKD 668
A +N + NC+F+ KAE V+ L+ D
Sbjct: 372 AALNNVLNCKFISGKAEAVLPGLIVD 397
>gi|391325311|ref|XP_003737182.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A-like
[Metaseiulus occidentalis]
Length = 594
Score = 142 bits (357), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 116/374 (31%), Positives = 177/374 (47%), Gaps = 49/374 (13%)
Query: 298 KSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGL 357
+S DVV P Y QL K++SI ++L KL R+ + +++ +E G
Sbjct: 155 QSVLDVVIPWHGDPYDEQLRRKQSSIEEVLIKLERDLSRQ--QSKDFNDFVRALKEDTGR 212
Query: 358 P--CKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVD-CPNV 414
C + I GSP N YRNK EF+ G+ + +GF +++ G T V D ++
Sbjct: 213 KTICDVADICGSPRENFYRNKNEFTPGHDETGRLVLGFRKSSYKRGSTEVGRVCDGMKHI 272
Query: 415 SEIACKYASIF-QEFLQQSDL-PVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISE 472
+ A + A +F Q FLQ ++ P ++ G+WRQ+TVR SE
Sbjct: 273 PKRALEVAELFEQYFLQCAEARPPYDAQDERGYWRQVTVR-----------------TSE 315
Query: 473 VNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNV 532
+ V+++ T ++ V E +L + + + ++L Q SNV
Sbjct: 316 TDQCMVIVLMHPQDLTIEE--VEQEVSKLRTYYDSSLSGVV-----SSLYFQRFDKKSNV 368
Query: 533 APADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSL 592
P E ++V I + + +RF ISP +FFQVNT AAE LY
Sbjct: 369 YPL--------------EHVAGSEV----ITEELLGIRFEISPPSFFQVNTKAAEILYGR 410
Query: 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCR 652
+ A+L D+ + D+ CG G+IGLT+A +V VIG E+ AV +A R A +GI NC
Sbjct: 411 IFELAELAADSTVLDLFCGIGSIGLTMASKVKRVIGAEIIPDAVDNARRVASQHGINNCE 470
Query: 653 FVCAKAEDVMGSLL 666
F+ KAEDV+ L
Sbjct: 471 FIAGKAEDVLSLAL 484
>gi|342179905|emb|CCC89379.1| conserved hypothetical protein [Trypanosoma congolense IL3000]
Length = 566
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 107/326 (32%), Positives = 154/326 (47%), Gaps = 42/326 (12%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGV----TAVEEPVDCPNV--SE 416
G+ SP +GYRN + + G++ +P++GF+ G+ EG+ + +E+ + NV
Sbjct: 185 GVHPSPEQSGYRNHVQLTFGFTDAKEPSIGFLRGSVVEGMYTIDSVLEKDIVTVNVLAKL 244
Query: 417 IACKYASIFQEFL--QQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
IA S++ F + L V+++ K+ GFWR+L VR LDVE
Sbjct: 245 IAEAIMSVYYMFKPPNKGGLEVYDKTKDKGFWRRLQVRHNTLGEVMLDVE---------- 294
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVS-NVA 533
+ + VS+ DD V A A+ + H G N A
Sbjct: 295 ----VDMESVSTEVVDDVKVQLSGILQGSELRAKLCAACGKDTAAVVSAHYHHGTGMNPA 350
Query: 534 PADAPLRLLSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYS 591
P PE + ++ R + + +S L+F +SPT+FFQVNT E L
Sbjct: 351 P----------------PETTRHLLLGRSTLTERLSGLQFELSPTSFFQVNTAGMELLLH 394
Query: 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNC 651
A+L P T L D+CCGTGTIGL+LA V VIGIE+ SAV DA RNAE NGI N
Sbjct: 395 EAVAVAELRPSTTLLDLCCGTGTIGLSLAKYVKRVIGIELVESAVHDARRNAERNGICNT 454
Query: 652 RFVCAKAEDVMGSLLKDYLNPLREED 677
F C + E ++ ++ L P ED
Sbjct: 455 TFHCGRVEHLLPDIISQ-LGPDDRED 479
>gi|297260579|ref|XP_002798309.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A-like
[Macaca mulatta]
Length = 566
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 131/479 (27%), Positives = 184/479 (38%), Gaps = 122/479 (25%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229
L ++PR ++++FL G+ K FV F S + A+ L G
Sbjct: 77 LQNVPRHASFSDVRRFLGRFGLQPHKTKLFGQPPCAFVTFRSAAERDKALRVLHGALWKG 136
Query: 230 KTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLA 289
+ L V P++ PM + +Q ES P
Sbjct: 137 RPLSVRLARPKA------DPM--ARRRRQEGESEPPA----------------------- 165
Query: 290 GDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIM 349
DVVTPL + Y+ QLE K+ Q+L+KL
Sbjct: 166 --------TRVADVVTPLWTVPYAEQLERKQLECEQVLQKL------------------- 198
Query: 350 KSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEP 408
CEF VG + + TVG LG ++ G AV P
Sbjct: 199 ---------------------------CEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAAP 231
Query: 409 VDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEV 468
D ++ E + FQEF++ + ++ +G W+QLTVR R
Sbjct: 232 FDTVHIPEATKQVVKAFQEFIRSTPYSAYDPETYTGHWKQLTVRTSRR------------ 279
Query: 469 NISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQG 528
+ M IA + LA+ F AG +S G
Sbjct: 280 -------RQAMAIAYFHPQKLSPEELAELKASLAQHFTAGPGRAS--------------G 318
Query: 529 VSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEK 588
V+ + + R P +G P E + + IH+ + L F ISP AFFQVNT AAE
Sbjct: 319 VTCLYFVEEGQR--KTPSQEGLPLE-HMAGDRCIHEDLLGLTFRISPHAFFQVNTPAAEV 375
Query: 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEING 647
LY++ DWA L + + DVCCGTGTIGL LA +V VIG+E+ AV DA NA+ NG
Sbjct: 376 LYTVIQDWAQLDAGSTVLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDARVNAQDNG 434
>gi|145513256|ref|XP_001442539.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124409892|emb|CAK75142.1| unnamed protein product [Paramecium tetraurelia]
Length = 559
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 103/369 (27%), Positives = 168/369 (45%), Gaps = 51/369 (13%)
Query: 306 PLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGIL 365
PL + Y Q+E K + +++KKL RN P+WI+ + I L
Sbjct: 134 PLYQVKYEEQVEQKMAELKKVIKKL-RNQFIQKNGKEYAPDWILDTNLIK---------L 183
Query: 366 GSPLV------NGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIAC 419
P+ YRNKCEF++ Y+ Q + VGF +G+ ++ +VE+P CP +A
Sbjct: 184 NDPITCDEQFRFNYRNKCEFTISYNSQKEVCVGFNVGSVQKNNDSVEQPNTCPVTPAVAM 243
Query: 420 KYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVM 479
+ A+ FQ +LQ S +NR SG WR L+VR+ + L + V+I++ N+ +
Sbjct: 244 EIANKFQTYLQSSKFQPFNRQNGSGVWRMLSVRKSDRTKQLL----ISVSINKDNLQQ-- 297
Query: 480 LIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL 539
E+ + + S L L++ SN D
Sbjct: 298 ----------------DEYAVVCDELMTLFSTSYGEFSLQGLLLMH----SNKLGQD--- 334
Query: 540 RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
L+ D + N + I D N IS AF Q +T +KLY + D
Sbjct: 335 --LASSADDTKILFGNSYYQEIILDKKIN----ISYNAFSQNHTPQCDKLYQVIIDLCKN 388
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659
T D+C G+GTIG+ ++ ++ ++ IEMN S+ DA N ++N ++NC+ +C+K E
Sbjct: 389 KKITKFLDLCAGSGTIGICVSDQIQDILAIEMNKSSCEDACENYKLNNLQNCQIICSKVE 448
Query: 660 DVMGSLLKD 668
DV+ + +D
Sbjct: 449 DVIKKVAQD 457
>gi|348528981|ref|XP_003451993.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog-B-like
[Oreochromis niloticus]
Length = 491
Score = 137 bits (345), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 119/382 (31%), Positives = 169/382 (44%), Gaps = 74/382 (19%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACP--NGVSLPEWIMKSREIGGLPC 359
DVVTPL +SY QLE K+ + ++L +L+ + P + +S P LP
Sbjct: 71 DVVTPLWRLSYDKQLELKQQNQEKILSQLSGHLSGDSPVRDKLSFPV----------LP- 119
Query: 360 KLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIA 418
+L SP+ +GYRNK FSV + P TVGF +G R+G N+ +
Sbjct: 120 ----VLPSPVRDGYRNKSTFSVNRGVDGNPKTVGFYVGTGRKGNIVCVSGDHLLNMPQKH 175
Query: 419 CKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVR---EGRSPGKPLDVENLEVNISEVNI 475
A +Q+F++ S L F G WR++TVR EGR+
Sbjct: 176 KLVARCYQDFIRLSSLEPCLLFHTGGHWREITVRTNKEGRT------------------- 216
Query: 476 SEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPA 535
M I + A V L F G + L +L Q+ ++
Sbjct: 217 ---MAIVYFHPQSLTRAEVAVHKAELVDYFTQGPGSVCQ---LDSLYFQE-SSMTRCTHE 269
Query: 536 DAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGD 595
+P +LL G+P I++ I +F IS AFFQVN AAE LY+ D
Sbjct: 270 QSPYQLLY-----GQPH---------INEEILGFKFRISADAFFQVNQAAAEVLYATVRD 315
Query: 596 WADLGPDT-----------LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAE 644
P+T L DVCCGTG +G+T++ RV +IGIE+ AV DA NA
Sbjct: 316 LCV--PNTEQDGGQTKAGGTLLDVCCGTGAMGITISPRVDKIIGIELIEQAVEDAKHNAA 373
Query: 645 INGIKNCRFVCAKAEDVMGSLL 666
+N + NC F+ KAE V+ L+
Sbjct: 374 LNNVLNCEFISGKAEAVLPGLI 395
>gi|219110012|ref|XP_002176758.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411293|gb|EEC51221.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 695
Score = 136 bits (343), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 127/424 (29%), Positives = 185/424 (43%), Gaps = 104/424 (24%)
Query: 301 RDVVTPLAHMSYSVQLEHKKNSIAQMLKK---------------LTRNARKACPNGVSLP 345
RD V PL + Y Q++ K + +M+KK L+RN + N V +
Sbjct: 219 RDKVVPLWRLPYDKQVDTK---MKEMIKKCAMKIVAETKSRFRDLSRNENR---NNVQVY 272
Query: 346 EWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGY-----------------SLQAK 388
+W+ K R I +L ++ +P + RNK EF+ GY
Sbjct: 273 KWLTKQRCI-----ELSDMITAP--SKIRNKNEFTFGYRYLFGTNGGCSDEISEADFTKV 325
Query: 389 PTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQ 448
P+VGFM+ + GV+ P C N+ AC I +FLQ S LP ++ + GFWR
Sbjct: 326 PSVGFMVTGWAGGVS---RPHCCENIPREACMVVDIVDDFLQTSPLPPYDSKFHKGFWRT 382
Query: 449 LTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDA-----VVNSEFERLAK 503
LT+R R + + V+++ +S DA E ERL
Sbjct: 383 LTIRTSRRTKECM----------------VIIVHSPASGGVGDADGYAEHFEKEKERLV- 425
Query: 504 AFAAGA-----TASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVV 558
A GA A L +T++ Q+ +G+SN P D P++ + +
Sbjct: 426 ALLKGAELQTEVAELQPLKVTSIFYQEFEGLSNPKP-DHPVQHVYGKQF----------- 473
Query: 559 EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDW---ADLGP-DTLLFDVCCGTGT 614
+H+ + F ISP AFFQVNT AE LY L D P DT L DVCCGTGT
Sbjct: 474 ---LHERLGKCIFQISPGAFFQVNTEGAEILYQLVVDQIREVSQNPKDTTLLDVCCGTGT 530
Query: 615 IGLTLAHRVGMVIGIEMNAS--AVSDAHRNAEINGIKN--------CRFVCAKAEDVMGS 664
IGLT + + ++ S A++DA +NAE+NG FV +AE +M S
Sbjct: 531 IGLTCVTEGVVAEVVGVDISEPAINDARKNAELNGCGQYDKDTGGLIHFVAGRAEQIMTS 590
Query: 665 LLKD 668
++ D
Sbjct: 591 VISD 594
Score = 42.4 bits (98), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 738 TSEGNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
TS + Q K +VA+VDP R GLH V++ LR + R++R++++
Sbjct: 589 TSVISDAKQSGKKLVAVVDPARDGLHADVVRALRANERIKRIVYV 633
>gi|389603980|ref|XP_003723135.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322504877|emb|CBZ14664.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 604
Score = 136 bits (343), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 104/320 (32%), Positives = 157/320 (49%), Gaps = 42/320 (13%)
Query: 360 KLEGILGSPLVNGYRNKCEFSVGYSLQAKPT-VGFMLGNFREGVTAV-------EEPVDC 411
+ GI SPL GYRN S G+ + +GF G+ EG A+ ++ V
Sbjct: 177 RFLGIFTSPLREGYRNHVNLSFGFCADGTTSALGFQEGSLVEGTAAILPATLPGKDIVTM 236
Query: 412 PNVSEI-ACKYASIFQEF--LQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEV 468
V+++ A ++ EF + L V+++ K SGFWR+L VR +DVE
Sbjct: 237 NTVAKVVAAALMNVCAEFRNAAKGGLDVFDKVKASGFWRKLQVRHNVKGEVMMDVE---- 292
Query: 469 NISEVNISEVMLIAQVSSATFDDAV--VNSEFERLAKAFAAGATASSPSLPLTALVIQDH 526
+ A+V +A V S+ R+ AAG + ++ + +L H
Sbjct: 293 ------VDAASTTAEVWAAVRRRLVEVFTSDEMRVKLVVAAGLSTAA----VVSLQCHTH 342
Query: 527 QGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAA 586
G+S++ P D P +L G P + + ++ L F +SPTAFFQVNT
Sbjct: 343 TGISSL-PFDVPREVLF-----GTPT---------LTEYLAGLCFELSPTAFFQVNTPGM 387
Query: 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN 646
E + + + A+L T L D+C GTGTIGLTL+ V VIGIE+ SAV++A RNA+ N
Sbjct: 388 ETMLTKVTEVAELSTGTTLLDLCSGTGTIGLTLSKHVRRVIGIELVESAVANARRNAQQN 447
Query: 647 GIKNCRFVCAKAEDVMGSLL 666
GI N F C + E ++ S++
Sbjct: 448 GIANAEFHCGRVEHLLPSVI 467
>gi|392343320|ref|XP_003754851.1| PREDICTED: LOW QUALITY PROTEIN: tRNA
(uracil(54)-C(5))-methyltransferase homolog [Rattus
norvegicus]
gi|392355861|ref|XP_003752155.1| PREDICTED: LOW QUALITY PROTEIN: tRNA
(uracil(54)-C(5))-methyltransferase homolog [Rattus
norvegicus]
Length = 490
Score = 136 bits (343), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 117/368 (31%), Positives = 169/368 (45%), Gaps = 48/368 (13%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
D VTP + Y QL+ K + ++L+ L + +GVS + +S GL C L
Sbjct: 76 DAVTPFWRLRYEEQLKVKFEAQKKILQSLESYLQVL--HGVSATVAVSQSE---GLCCLL 130
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVD-CPNVSEIAC 419
I+ SP GY NK FSV S P TVG+ LG +R+G A+ P + N+ +
Sbjct: 131 HPIMPSPTTTGYXNKSTFSVNQSPDGNPKTVGYYLGTWRDG-NAICVPCNHLKNIPDKHS 189
Query: 420 KYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVM 479
+ A ++ FL QS + F G WR+L VR + PG + + V +S+
Sbjct: 190 QVAXYYEVFLXQSSVEPCLLFHEGGHWRELIVRTYK-PGHTMAI----VTFHPQGLSQEE 244
Query: 480 LIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL 539
L Q T D A GA LT+L Q+ ++ + +P
Sbjct: 245 LCVQ--KVTLKD----------FSAKGPGAVCE-----LTSLYFQE-STMTRCSHQQSPY 286
Query: 540 RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
LL GEP D++ +I ISP AFFQ+NT AE LY + + +
Sbjct: 287 XLLF-----GEPYIFEDLLGLKIQ---------ISPDAFFQINTAGAEILYQIIRELRRV 332
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659
D++L D CCGTGT+ L +A +V G E+ AV DA +A NG+ NC F +AE
Sbjct: 333 NSDSILLDTCCGTGTLWLDVASQVH---GFELVEQAVEDARWSAAFNGVTNCEFHAGRAE 389
Query: 660 DVMGSLLK 667
++ LLK
Sbjct: 390 TILPQLLK 397
>gi|340052218|emb|CCC46489.1| conserved hypothetical protein [Trypanosoma vivax Y486]
Length = 564
Score = 136 bits (342), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 98/315 (31%), Positives = 142/315 (45%), Gaps = 41/315 (13%)
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVD------CPNVSEIACK 420
SP V+GYRN + G++ +P +GF+ G EG+ ++ ++ P +A
Sbjct: 185 SPEVSGYRNHVLLTFGFTESGEPAIGFLKGAMVEGIHTIDSVLEKDIVTMSPLARVVAHA 244
Query: 421 YASIFQEFL--QQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEV 478
S++ F ++ L V ++ K GFWR+L VR +D+E L+ + N+ E
Sbjct: 245 VMSVYGFFRAPERGGLEVQDKLKGEGFWRRLQVRHNVRGEVMVDIE-LDADSVPPNLLEA 303
Query: 479 M---LIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPA 535
+ LI + + N + A +A H G P
Sbjct: 304 VKDRLIGVLQGMELQHELRNVSQKETAIVVSA----------------HYHHGTGMTTPP 347
Query: 536 DAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGD 595
R L G P + + +S L+F +SP +FFQVNT A E L
Sbjct: 348 PDAQRFLLF----GAPT---------LTEHLSGLQFKLSPASFFQVNTPAMELLLRELAT 394
Query: 596 WADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVC 655
A LGP T L D+CCG GTIGL LA V VIGIE+ SAV DA NAE+N I N F C
Sbjct: 395 MAVLGPGTTLLDLCCGPGTIGLALAKHVKRVIGIELVESAVQDAKLNAELNNISNTTFHC 454
Query: 656 AKAEDVMGSLLKDYL 670
+ E V+ +++ L
Sbjct: 455 GRVEHVLPEVIRGLL 469
>gi|410901216|ref|XP_003964092.1| PREDICTED: tRNA (uracil(54)-C(5))-methyltransferase homolog-B-like
[Takifugu rubripes]
Length = 486
Score = 135 bits (341), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 119/388 (30%), Positives = 165/388 (42%), Gaps = 75/388 (19%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTR--------NARKACPNGVSLPEWIMKSRE 353
DVVTPL MSY QL+ K+ +L++L+ +A N ++ P
Sbjct: 62 DVVTPLWRMSYEEQLDLKQKQQENILRQLSGYLLEDFQPHASSHLRNKLNFPV------- 114
Query: 354 IGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCP 412
LP IL SP +GYRNK FSV + P TVGF +G ++G
Sbjct: 115 ---LP-----ILPSPHKDGYRNKSTFSVNRGIDGNPKTVGFYVGTGKKGNIVCVNGDHLL 166
Query: 413 NVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISE 472
N+ E A +Q+F++ S L F G WR++T+R R
Sbjct: 167 NMPEKHKLVARCYQDFIRLSPLEPCLLFHTGGHWREITLRTNRQ---------------- 210
Query: 473 VNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNV 532
M I T A V L F G + L +L Q+ ++
Sbjct: 211 ---GHTMAIVYFHPQTLSPAEVALHKADLVDYFTRGPGSVC---QLDSLFFQE-STMTRT 263
Query: 533 APADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSL 592
++P +LL G+P I++ + +F IS AFFQVN +AAE LYS
Sbjct: 264 THEESPYQLL-----HGQPH---------IYEEVLGFKFRISADAFFQVNQVAAEVLYSA 309
Query: 593 GGDW-----------ADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHR 641
D +G L DVCCGTG IG+T + RV VIGIE+ AV DA
Sbjct: 310 VRDLCVPQHSVQEKRTKVGT---LLDVCCGTGAIGITTSPRVDRVIGIELVEQAVEDAKH 366
Query: 642 NAEINGIKNCRFVCAKAEDVMGSLLKDY 669
NA +N + NC F+ KAE V+ L+ +
Sbjct: 367 NAALNDVPNCEFIPGKAEVVLPGLMSQF 394
>gi|47223267|emb|CAF98651.1| unnamed protein product [Tetraodon nigroviridis]
Length = 764
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 113/378 (29%), Positives = 160/378 (42%), Gaps = 61/378 (16%)
Query: 302 DVVTPLAHMSYSVQLEHKKNS----IAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGL 357
DVVTPL +SY QLE K+ + Q+ L+ + + P+ + L
Sbjct: 8 DVVTPLWRLSYEEQLELKQKQQERILCQLCGYLSDDFQPQAPSHLR-----------NKL 56
Query: 358 PCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSE 416
L I SP+ +GYRNK FSV + P TVGF +G ++ N+ E
Sbjct: 57 TFPLLPIRPSPVRDGYRNKSTFSVNRGMDGNPKTVGFYIGTGKKANIVCVNGDHLLNMPE 116
Query: 417 IACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNIS 476
A +Q+F++ S L F + G WR++TVR R
Sbjct: 117 KHKLVARCYQDFIRLSPLEPCLLFHSGGHWREITVRTNRE-------------------G 157
Query: 477 EVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPAD 536
M I T + L F G + L +L Q+ ++ D
Sbjct: 158 HTMAIVYFHPQTLSPQEIAVHKADLVDYFTLGPGSVCQ---LDSLFFQE-STMTRTTHED 213
Query: 537 APLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDW 596
+P +LL G+P I++ + + RF IS AFFQVN AAE LYS D
Sbjct: 214 SPYQLL-----HGQPH---------IYEEVLSFRFRISADAFFQVNQAAAEVLYSTARDL 259
Query: 597 ADLGPDT--------LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI 648
P L DVCCGTG G+T + RV V+G+E+ AV DAH NA +N +
Sbjct: 260 CVPHPSVQGDRTRVGTLLDVCCGTGAFGITTSPRVDRVVGVELMEQAVEDAHHNASLNRV 319
Query: 649 KNCRFVCAKAEDVMGSLL 666
NC F+ +AE V+ L+
Sbjct: 320 LNCEFIPGRAEVVLPGLV 337
>gi|224010878|ref|XP_002294396.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220969891|gb|EED88230.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 548
Score = 134 bits (336), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 121/436 (27%), Positives = 181/436 (41%), Gaps = 100/436 (22%)
Query: 301 RDVVTPLAHMSYSVQLEHKKNSIAQM------------LKKLTRNARKACPNGVSLPEWI 348
RD +TPL M Y QL K + + + L + A++ + V L +W+
Sbjct: 38 RDAITPLWRMPYKEQLASKTRELTKKCAMKIVKEIKGKFRTLEQEAKRGHRDKVELYDWV 97
Query: 349 MKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYS------------------------ 384
R I ++E + SP + YRNKCEF+ GY
Sbjct: 98 GGKRVI-----EIEDPVPSPKIFEYRNKCEFTFGYHHVVEKAEEGGDGKKDGGDVGMEGV 152
Query: 385 --------LQAKPTVGFMLGNFREGVTAVEEPVDC-PNVSEIACKYASIFQEFLQQSDLP 435
++ P VGF+ + GV P C N+ + AC A I +FL S LP
Sbjct: 153 ETPASDAVVKKVPAVGFLPQGWNGGVY----PPHCLQNMPDWACSVADIMNDFLPTSPLP 208
Query: 436 VWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVN 495
++ + GF+R +T+R L V + + + S + D V
Sbjct: 209 PYDSKVHRGFFRTITIRCS------LRTRECMVIVLHAPAKGGVGAKEDRSDDYTD-VFE 261
Query: 496 SEFERLA----------------KAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL 539
SE +RL + + S + +T++ Q+++G+SN +P
Sbjct: 262 SEKQRLVDMLTKDALPTPKRDFPEGYVREVNESDGGIKVTSIFFQEYEGLSNPSPEHPVQ 321
Query: 540 RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWA-- 597
+ + I + + F ISP AFFQ NT AEKLYS+ D
Sbjct: 322 HVFG---------------KNCIEEKLGKCTFQISPGAFFQTNTAGAEKLYSMVVDRVKE 366
Query: 598 --DLGPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGI--KNC 651
+ DTLL DVCCGTGTIGLTL VG ++G+++ A+ DA NAE NG+
Sbjct: 367 VTNNPKDTLLVDVCCGTGTIGLTLMKEGVVGSLVGVDIAKPAILDARANAEKNGMTTNTT 426
Query: 652 RFVCAKAEDVMGSLLK 667
RFV + AE V+ +K
Sbjct: 427 RFVASPAEKVLPDEMK 442
Score = 43.5 bits (101), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 751 VVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
VVA+VDP R GLH TV+K LR R+QR++++
Sbjct: 450 VVAVVDPARDGLHGTVLKTLRMTERIQRIVYV 481
>gi|302838263|ref|XP_002950690.1| hypothetical protein VOLCADRAFT_33590 [Volvox carteri f.
nagariensis]
gi|300264239|gb|EFJ48436.1| hypothetical protein VOLCADRAFT_33590 [Volvox carteri f.
nagariensis]
Length = 211
Score = 134 bits (336), Expect = 3e-28, Method: Composition-based stats.
Identities = 70/123 (56%), Positives = 80/123 (65%), Gaps = 10/123 (8%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
IHDS+ LRF ISPTAFFQVNT A LY + GDWA GP TLL D+CCGTGTIG+TLA
Sbjct: 6 IHDSLCELRFRISPTAFFQVNTPATCALYKVVGDWAAAGPSTLLLDICCGTGTIGITLAG 65
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHAS 681
RV VIG++ ASA+ DA NA +NGI N FV KAED + +L HA
Sbjct: 66 RVSKVIGVDSVASAIEDARVNAALNGITNAEFVAGKAEDALPGILA----------AHAG 115
Query: 682 EGS 684
EGS
Sbjct: 116 EGS 118
>gi|341901047|gb|EGT56982.1| hypothetical protein CAEBREN_10396 [Caenorhabditis brenneri]
Length = 600
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 121/430 (28%), Positives = 182/430 (42%), Gaps = 111/430 (25%)
Query: 298 KSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGL 357
K+AR+ VTPLA M Y QLE K+ + + + KL + N ++ + R+
Sbjct: 122 KTARESVTPLADMEYEKQLELKQQNSEKTMDKLHGQLNR---NNIANIGKQSQFRQ---- 174
Query: 358 PCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEI 417
+L+ IL +P YRNKCEF++G L + +GF+ G F E V PV+ VS
Sbjct: 175 --RLQTILPAPKTTSYRNKCEFTIGNDLDGELCIGFVGGRFAEKKHFVIPPVNVDIVSNQ 232
Query: 418 ACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISE 477
EF++++ L ++ F+ GFWR LT+RE +
Sbjct: 233 MLAILKDASEFVKETGLEPFDEFERKGFWRMLTIREFG--------------------GD 272
Query: 478 VMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADA 537
VMLI V T + + +++ F T + + ++ Q+ +S DA
Sbjct: 273 VMLIFTVFPLTEQEKTEEVQ-KKIEARFLDFDTFKTKQYRVCSIYWQEMVHIS-----DA 326
Query: 538 P-LRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDW 596
P +L++ G P I++S+ + RF +SP AFFQ N+ AA LYS G+
Sbjct: 327 PNFKLIA-----GTP---------YIYESLLDCRFRVSPPAFFQTNSQAACVLYSKIGEL 372
Query: 597 ADLG-----------------------------------------------PDT------ 603
LG P+T
Sbjct: 373 CGLGEKASTTSDVPMETDEKPVEASEPSKAEELSKVEEDLDAPPAKIAKVEPETTTPEDH 432
Query: 604 --LLFDVCCGTGTIGLTLAHRVG-----MVIGIEMNASAVSDAHRNAEINGI-KNCRFVC 655
+L D+CCGTGTIG L + IGIEM A AV DA +NA+ N + K C+++
Sbjct: 433 GTILLDICCGTGTIGQCLLKTIQNTQKVCCIGIEMIAEAVEDAKQNAKQNKMEKCCKYIA 492
Query: 656 AKAEDVMGSL 665
KAED S+
Sbjct: 493 GKAEDTFRSM 502
>gi|426258378|ref|XP_004022790.1| PREDICTED: LOW QUALITY PROTEIN: tRNA
(uracil(54)-C(5))-methyltransferase homolog [Ovis aries]
Length = 544
Score = 132 bits (333), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 112/368 (30%), Positives = 167/368 (45%), Gaps = 43/368 (11%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
DVVTPL +SY QL+ K + ++L++L + NGV++ +S+ GL C L
Sbjct: 133 DVVTPLWRLSYEEQLKVKFEAQKKILQRLEFYLQGL--NGVNMTTTGPRSQ---GLCCFL 187
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
+ ++ SP+++GY NK F + P TVG LG +R+ N+ E +
Sbjct: 188 QPVIPSPVIDGYXNKSTFFLNQGPGGNPKTVGHYLGTWRDRDIVCVRSNRLKNIPEKHSQ 247
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
A ++ FL QS L F G+WR+LTV N + + + I
Sbjct: 248 VAQYYEVFLXQSPLGPCLLFHEGGYWRELTV-----------CTNSQGHTMAIIIFYPQE 296
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
+ Q + +AV EF F G A LT+L Q+ ++ + +
Sbjct: 297 LMQEELSVQKEAV--KEF------FTKGPGAVCD---LTSLYFQEST-TTHCSHQQSLYX 344
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
L G+P I + + L+ C+SP AFFQVNT AE LY G+ +
Sbjct: 345 FLF-----GDPH---------IFEDLLGLKICMSPDAFFQVNTAGAEMLYRTVGELRGVN 390
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
+T+L +VCCGTG +LA V+GIE+ A DA A GI NC F +AE
Sbjct: 391 SNTILLNVCCGTGVXSASLAQYASXVLGIELVEQAAEDARWTAAFAGITNCEFHPGQAEK 450
Query: 661 VMGSLLKD 668
++ LLK
Sbjct: 451 ILPQLLKS 458
>gi|313104036|sp|A4QP75.2|TRM2B_DANRE RecName: Full=tRNA (uracil(54)-C(5))-methyltransferase homolog-B;
AltName: Full=TRM2 homolog B
Length = 480
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 108/380 (28%), Positives = 169/380 (44%), Gaps = 69/380 (18%)
Query: 302 DVVTPLAHMSYSVQL----EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGL 357
D VTPL M+Y QL EH+K + +M+K+L+++ +A + ++ P
Sbjct: 68 DTVTPLWRMTYEDQLQWKYEHQKKILLKMMKELSQDPTRAFSDHLNFP------------ 115
Query: 358 PCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSE 416
L I+ SP+ +GYRNK FSV + P T+GF +G + G V ++
Sbjct: 116 ---LLPIVASPVRDGYRNKSTFSVNKGIDGNPKTLGFYIGTGKAGNIVC---VHADHLLS 169
Query: 417 IACKY---ASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEV 473
I K+ A +++F++ S L F + G WR++T+R +
Sbjct: 170 IPSKHKMVARCYEDFIRLSPLRPCILFDDGGHWREITIRTNST----------------- 212
Query: 474 NISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVA 533
M I + + L + F G A L +L Q+
Sbjct: 213 --GHTMAIVYFHPQSLTPEETDIHKAALVEYFTQGPGAICQ---LDSLYFQE-------- 259
Query: 534 PADAPLRLLSIPKADGEPEESNDVV-EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSL 592
++ + E + + + I++ + +F ISP +FFQVN AAE LY
Sbjct: 260 --------TTMTRCSHEQSQYQLLYGQTHIYEEVLGFKFRISPDSFFQVNREAAEALYKT 311
Query: 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCR 652
+ + L DVCCGTG IG++L+ ++ VIGIE+ AV DA NA +N + NC
Sbjct: 312 VAELSQPCVGGTLLDVCCGTGAIGISLSPQMERVIGIELIEQAVEDAKFNAALNRVCNCE 371
Query: 653 FVCAKAE----DVMGSLLKD 668
F+ KAE D+MGSL D
Sbjct: 372 FLAGKAEVVLPDLMGSLSSD 391
>gi|171545987|ref|NP_001116415.1| tRNA (uracil(54)-C(5))-methyltransferase homolog-B [Danio rerio]
gi|141795408|gb|AAI39683.1| Zgc:162982 protein [Danio rerio]
Length = 473
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 108/380 (28%), Positives = 169/380 (44%), Gaps = 69/380 (18%)
Query: 302 DVVTPLAHMSYSVQL----EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGL 357
D VTPL M+Y QL EH+K + +M+K+L+++ +A + ++ P
Sbjct: 61 DTVTPLWRMTYEDQLQWKYEHQKKILLKMMKELSQDPTRAFSDHLNFP------------ 108
Query: 358 PCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSE 416
L I+ SP+ +GYRNK FSV + P T+GF +G + G V ++
Sbjct: 109 ---LLPIVASPVRDGYRNKSTFSVNKGIDGNPKTLGFYIGTGKAGNIVC---VHADHLLS 162
Query: 417 IACKY---ASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEV 473
I K+ A +++F++ S L F + G WR++T+R +
Sbjct: 163 IPSKHKMVARCYEDFIRLSPLRPCILFDDGGHWREITIRTNST----------------- 205
Query: 474 NISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVA 533
M I + + L + F G A L +L Q+
Sbjct: 206 --GHTMAIVYFHPQSLTPEETDIHKAALVEYFTQGPGAICQ---LDSLYFQE-------- 252
Query: 534 PADAPLRLLSIPKADGEPEESNDVV-EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSL 592
++ + E + + + I++ + +F ISP +FFQVN AAE LY
Sbjct: 253 --------TTMTRCSHEQSQYQLLYGQTHIYEEVLGFKFRISPDSFFQVNREAAEALYKT 304
Query: 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCR 652
+ + L DVCCGTG IG++L+ ++ VIGIE+ AV DA NA +N + NC
Sbjct: 305 VAELSQPCVGGTLLDVCCGTGAIGISLSPQMERVIGIELIEQAVEDAKFNAALNRVCNCE 364
Query: 653 FVCAKAE----DVMGSLLKD 668
F+ KAE D+MGSL D
Sbjct: 365 FLAGKAEVVLPDLMGSLSSD 384
>gi|326918818|ref|XP_003205683.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog [Meleagris
gallopavo]
Length = 662
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 105/300 (35%), Positives = 140/300 (46%), Gaps = 38/300 (12%)
Query: 368 PLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
P VNGYRNK FSV P TVG +G R N+ + A ++
Sbjct: 351 PTVNGYRNKSTFSVNRGPDGNPKTVGLYVGTGRGQNIVCVRTDHMKNIPLKHKQVAQCYE 410
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
+F+++S L F G WR+L VR + G + V V ++ + L AQ +
Sbjct: 411 QFIRRSPLGSCILFHEGGHWRELVVRTSQH-GHTMAV----VTFHPQHLGQEALAAQKA- 464
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
L + F G A+ LT+L Q+ ++ + +P +LL
Sbjct: 465 -------------LLKEFFTCGPGAACA---LTSLYFQE-STMTRCSHEQSPFQLL---- 503
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
GEP DV++ L F ISP AFFQVNT AE LY + + +T+L
Sbjct: 504 -HGEPHIFEDVLD---------LTFRISPDAFFQVNTSGAEVLYQAVRELSQAATNTVLL 553
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
DVCCGTGTIGL+LA V VIG+E+ AV DA NA NGI NC F KAE V+ LL
Sbjct: 554 DVCCGTGTIGLSLARHVSKVIGVEIVQKAVEDARWNAAFNGISNCEFHSGKAEAVLPELL 613
>gi|449686477|ref|XP_002158803.2| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A-like [Hydra
magnipapillata]
Length = 685
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 138/302 (45%), Gaps = 42/302 (13%)
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQ-AKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYA 422
I+ SP+ + YRNK EF++G VGF LG+++ G + EP C N S A A
Sbjct: 261 IIKSPVTSHYRNKVEFTIGKGPDGVDNMVGFRLGSYKAGSLIIVEPTKCANCSCEAIAIA 320
Query: 423 SIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIA 482
F EFL+ + + G W+QLTVR S S++M I
Sbjct: 321 KDFSEFLRTLPYSSFCVSTHVGLWQQLTVRTSSS-------------------SDIMAII 361
Query: 483 QVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLL 542
Q++ E++ L T S+ +T+L I +N +L+
Sbjct: 362 QLNPQAI---CKKEEYDELILKLRKHFTGEFRSVKVTSLYISSSSQKNNNIDT---FKLI 415
Query: 543 SIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG-P 601
+ I +S+ L F IS AFFQVN AAE LY +W +
Sbjct: 416 YGSE--------------HITESLLGLNFRISVDAFFQVNKPAAEILYKTISEWCETSLN 461
Query: 602 DTLLFDVCCGTGTIGLTLAHRVGM-VIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
D L+ D+CCGTGTIG+ +A + V+GIE+ AV DA+ N+ NG+ N +F+C AE
Sbjct: 462 DALILDLCCGTGTIGICIAKNKRLPVVGIEICIQAVQDANFNSAANGVTNAKFICGAAEK 521
Query: 661 VM 662
V+
Sbjct: 522 VL 523
Score = 45.8 bits (107), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 749 KNVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
KN++AIVDPPR GLH V+K LR+ A +++++ +
Sbjct: 533 KNIIAIVDPPRAGLHKDVLKCLRSCAAIKKIIFV 566
>gi|119623238|gb|EAX02833.1| chromosome X open reading frame 34, isoform CRA_c [Homo sapiens]
gi|119623239|gb|EAX02834.1| chromosome X open reading frame 34, isoform CRA_c [Homo sapiens]
Length = 373
Score = 129 bits (323), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 100/313 (31%), Positives = 145/313 (46%), Gaps = 43/313 (13%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
DVVTPL +SY QL+ K + ++L++L + NGVS+ + KS L C L
Sbjct: 86 DVVTPLWRLSYEEQLKVKFAAQKKILQRLESYIQML--NGVSVTTAVPKSER---LSCLL 140
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
I+ SP++NGYRNK FSV P TVGF LG +R+G + N+ E +
Sbjct: 141 HPIIPSPVINGYRNKSTFSVNRGPDGNPKTVGFYLGTWRDGNVVCVQSNHLKNIPEKHSQ 200
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
A ++ FL+QS L F G+WR+LTVR M
Sbjct: 201 VAQYYEVFLRQSPLEPCLVFHEGGYWRELTVRTNSQ-------------------GHTMA 241
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
I ++ + E + + F G A+ LT+L Q+ ++ + +P +
Sbjct: 242 IITFHPQKLSQEELHVQKEIVKEFFIRGPGAACG---LTSLYFQEST-MTRCSHQQSPYQ 297
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
LL GEP I + + +L+ ISP AFFQ+NT AE LY G+ +
Sbjct: 298 LLF-----GEP---------YIFEELLSLKIRISPDAFFQINTAGAEMLYRTVGELTGVN 343
Query: 601 PDTLLFDVCCGTG 613
DT+L D+CCGTG
Sbjct: 344 SDTILLDICCGTG 356
>gi|397606347|gb|EJK59284.1| hypothetical protein THAOC_20517 [Thalassiosira oceanica]
Length = 768
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 120/453 (26%), Positives = 183/453 (40%), Gaps = 128/453 (28%)
Query: 300 ARDVVTPLAHMSYSVQLEHKKNS------------IAQMLKKLTRNARKACPN--GVSLP 345
RD +TPL +SY QL+ K I + + + AR+ PN + +
Sbjct: 251 VRDKITPLWRLSYKDQLDKKAREMVNKSAMKIVKEIKGKFRTIEKEARRD-PNRSKIEVY 309
Query: 346 EWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAK----------------- 388
+W+ R P +++ SP YRNKCEF+ G+SL K
Sbjct: 310 DWVKAKR-----PVEMDAPTPSPRQFEYRNKCEFTCGFSLSRKNGSGVEKDDGKVAATGI 364
Query: 389 ------------------PTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQ 430
P GF+ + GV P PN+ + AC + I +FL+
Sbjct: 365 EAKGELEDENANEEFVKTPACGFLAQGWSGGVYM---PHILPNIPDWACGLSDILNDFLK 421
Query: 431 QSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLI--------- 481
S +P ++ + G WR T+R + E ++I
Sbjct: 422 SSPIPPYDSKVHRGLWRVFTLR------------------CSIRTKEALVIVLHAPAKGG 463
Query: 482 AQVSSATFDD--AVVNSEFERLAKAFAAGAT-----------ASSP------SLPLTALV 522
A DD SE +RL + A S P + +T++
Sbjct: 464 AGARDGGLDDYTGTFESEKKRLVEMLTKEAIPVPTRDLPESHVSEPRARDGTDIRVTSIF 523
Query: 523 IQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVN 582
Q+ G+S+ P D P++ + V + + + + F ISP AFFQ N
Sbjct: 524 FQEFDGLSH-PPVDHPVQHV--------------VGKKTLDERLGKCTFQISPGAFFQTN 568
Query: 583 TLAAEKLYSLGGDWA----DLGPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAV 636
T AE LY++ D D +T+L DVCCGTGTIGLTL VG ++G+++ A A+
Sbjct: 569 TEGAEILYNIVVDRVREVTDNPKETMLVDVCCGTGTIGLTLLKEGVVGKLVGVDIAAPAI 628
Query: 637 SDAHRNAEINGIKN---CRFVCAKAEDVMGSLL 666
DA NA NG + +FV + AE+VM ++L
Sbjct: 629 EDAKVNAAKNGFADESVTKFVASPAENVMPAIL 661
Score = 42.7 bits (99), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 751 VVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
VVA+VDP R GLH VIK LR + R++RL+++
Sbjct: 670 VVAVVDPAREGLHGIVIKTLRANERIERLVYV 701
>gi|367467000|ref|ZP_09467028.1| RNA methyltransferase TrmA family [Patulibacter sp. I11]
gi|365817867|gb|EHN12813.1| RNA methyltransferase TrmA family [Patulibacter sp. I11]
Length = 477
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 99/353 (28%), Positives = 152/353 (43%), Gaps = 71/353 (20%)
Query: 306 PLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGIL 365
P +SY QLE K + L++L +A ++E I+
Sbjct: 106 PWQVLSYERQLEIKAEQVEDALRRLGGHA-----------------------DVEIEPIV 142
Query: 366 GSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF 425
+ YRNK E+S G + GF + + +E DC SE+ + +
Sbjct: 143 PAEQQWRYRNKLEYSFGEAQDGSLLCGFHAAGSWQRIEHIE---DCLLASEVGNQARRVV 199
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
++ L ++R GF R L VREG G+ L+V I S
Sbjct: 200 HQWCVDEGLGAYDRKLQQGFLRNLVVREGIRTGE------LQVRIV------------TS 241
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
FD +++ RL +A P+T L+ V
Sbjct: 242 VGEFDALSLST---RLQEAMDG---------PVTGLLWTQMHDVGETTYG---------- 279
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
GE E + +A +H+ IS LR ISP FFQ NT+ AEKLY + G++ADL L
Sbjct: 280 ---GETELVSG--DAYLHEEISGLRMRISPEGFFQTNTVMAEKLYGIAGEYADLQGWERL 334
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658
FD+ CG+G +GLT+A R G ++G+E+ ++ DA NA++N ++N RF+ + A
Sbjct: 335 FDLYCGSGAVGLTMAARAGELVGVEIVEDSIRDATYNAQLNDVRNARFLASDA 387
>gi|256070796|ref|XP_002571728.1| rna m5u methyltransferase [Schistosoma mansoni]
gi|360043147|emb|CCD78559.1| putative rna m5u methyltransferase [Schistosoma mansoni]
Length = 607
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 111/395 (28%), Positives = 171/395 (43%), Gaps = 69/395 (17%)
Query: 298 KSARDVVTPLAHMSYSV-QLEHKKNSIAQMLKKLTRNARKACP-----NGVSLPEWIMKS 351
++ RD + PL ++Y QL K+N + + L ++ R P + V E +
Sbjct: 151 ETLRDSILPLWRLNYDPDQLIEKRNLVLKCLAEIRRRLLLINPEIGNVDSVKFVEEYDSN 210
Query: 352 REIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAK-PTVGFMLGNFREGVTAVEEPVD 410
+ CKL I+ SP+ YRNK E +VGY + P +GF ++ G AV
Sbjct: 211 SQTT--ICKLAPIIPSPIQTEYRNKSELTVGYDMDGSGPVIGFRYSKYKGGSVAVGSFKS 268
Query: 411 CPNVSEIACKYASIFQEFL------QQSDLPVWNRF---KNSGFWRQLTVREGRSPGKPL 461
+ + K + Q FL + LP+ + F +G WR + +RE RS
Sbjct: 269 WNFMPRNSNKVINALQNFLTACFKGEFEQLPMLDAFDPITYNGNWRHVLIRESRS----- 323
Query: 462 DVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTAL 521
+ +++ +++ F + +N+ + L F G + S L L
Sbjct: 324 --------------GDTLVVLYINTYGFTEENINNLLDELRTWFQTGPGSDS-GLTSLYL 368
Query: 522 VIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQV 581
I G+ +D LR + G+P I + L F IS +AFFQV
Sbjct: 369 SICSRSGIKQ---SDEDLR-----QVFGKP---------YIIEQCCGLNFHISISAFFQV 411
Query: 582 NTLAAEKLYSLGGDWADLGPDT--------------LLFDVCCGTGTIGLTLAHRVGMVI 627
NTLAAE L+ +L + +L DVCCGTGTI L L+ VI
Sbjct: 412 NTLAAELLFERISCLCNLPSENEITCANKNPNEKKRILLDVCCGTGTIALCLSKHFDRVI 471
Query: 628 GIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
GI+M SA+ DA NA++N I+N F KAE+++
Sbjct: 472 GIDMCNSAIEDAKSNAKLNDIQNVEFFAGKAENML 506
>gi|403298771|ref|XP_003940180.1| PREDICTED: LOW QUALITY PROTEIN: tRNA
(uracil(54)-C(5))-methyltransferase homolog [Saimiri
boliviensis boliviensis]
Length = 510
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 108/374 (28%), Positives = 160/374 (42%), Gaps = 49/374 (13%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
DVVTPL +SY QL+ K + ++L++L + NGV + + KS + L L
Sbjct: 86 DVVTPLWRLSYEEQLKVKFEAQKKILQRLESYIQML--NGVDVTTAVSKSERLSFL---L 140
Query: 362 EGILGS-------PLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
I+ S P + N S S + +L +G + N+
Sbjct: 141 HPIIPSVSPHLPIPYLLSPLNANNISCSRSPDLRSKTMXILFLSVDGNIVCVQSNHLKNI 200
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
E + A ++ FL+QS L F G+WR+L VR
Sbjct: 201 PEKHTQVAQYYEVFLRQSPLEPCLVFHEGGYWRELIVRTNSQ------------------ 242
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
M I ++ + E + + F G A+ LT+L Q+ ++ +
Sbjct: 243 -GHTMAIITFHPQELSQEELHGQKEIVKEFFIRGPGAACD---LTSLYFQE-STMTRCSH 297
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
+P LL GEP I + + +L+ +SP AFFQ+NT AE LY G
Sbjct: 298 QQSPFELLF-----GEP---------YIFEELLSLKIRVSPDAFFQINTAGAEMLYRTVG 343
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
+ A + DT+L D+CCGTG IGL+LA V+GIE+ AV DA A NGI N F
Sbjct: 344 ELAGVNSDTILLDICCGTGVIGLSLAQHTSQVLGIELVEQAVEDARWTAAFNGITNSEFH 403
Query: 655 CAKAEDVMGSLLKD 668
+AE ++ LLK
Sbjct: 404 TGRAEKILPGLLKS 417
>gi|159483505|ref|XP_001699801.1| tRNA (uracil-5)-methyltransferase [Chlamydomonas reinhardtii]
gi|158281743|gb|EDP07497.1| tRNA (uracil-5)-methyltransferase [Chlamydomonas reinhardtii]
Length = 206
Score = 123 bits (308), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 73/105 (69%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
IHD++ L+F ISPTAFFQVN+ A LY L GDWA P TLL D+CCGTGTIGL LA
Sbjct: 5 IHDALCELKFRISPTAFFQVNSPATCVLYKLVGDWAAARPKTLLLDICCGTGTIGLMLAS 64
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
+V V+G++ SAV DA NA +NGI N FV KAED + S+L
Sbjct: 65 KVAKVVGVDNVESAVEDARVNAALNGIGNAEFVAGKAEDALQSIL 109
>gi|116630115|ref|YP_815287.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
gasseri ATCC 33323]
gi|116095697|gb|ABJ60849.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
gasseri ATCC 33323]
Length = 450
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 151/356 (42%), Gaps = 75/356 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
LAH+ Y QLE K+N + +L K + K+ L
Sbjct: 82 LAHIKYDKQLEFKRNQVVNLLHKADLDN------------------------IKVSQTLP 117
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
SP GYRNK + V + K +GF + + V P + + K I
Sbjct: 118 SPEETGYRNKAQVPVR-EVHGKLDIGFFRKHSHDLVPLTNFFTTDPEIDRVLIKVRDI-- 174
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
L+++ +P ++ N G R L VR ++ G E+M+I
Sbjct: 175 --LRKNHVPAYDEIHNKGEVRYLDVRRSKASG------------------EIMVIL---- 210
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
++ EF +L K + +T++V+ + +NV L
Sbjct: 211 -----VCLHKEFPQLKKVTKEISEIKG----VTSVVLNHNPKKTNVILGKKDYLLW---- 257
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
GEP+ I D I ++ F ISP +FFQ+N+L +LY L ADL PD ++
Sbjct: 258 --GEPQ---------ITDKIGDVSFKISPQSFFQINSLQTPRLYDLAIQKADLKPDDVVI 306
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
D G GTIGL++A V V G+E+ AV DA+ NA++NGI N +V KAE+VM
Sbjct: 307 DAYSGIGTIGLSVAKHVKAVRGMEVIKPAVDDANANAKLNGINNAEYVVGKAEEVM 362
>gi|420147968|ref|ZP_14655242.1| 23S rRNA (Uracil-5-)-methyltransferase [Lactobacillus gasseri CECT
5714]
gi|398400636|gb|EJN54183.1| 23S rRNA (Uracil-5-)-methyltransferase [Lactobacillus gasseri CECT
5714]
Length = 450
Score = 122 bits (307), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 151/356 (42%), Gaps = 75/356 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
LAH+ Y QLE K+N + +L K + K+ L
Sbjct: 82 LAHIKYDKQLEFKRNQVVNLLHKADLDN------------------------IKVSQTLP 117
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
SP GYRNK + V + K +GF + + V P + + K I
Sbjct: 118 SPEETGYRNKAQVPVR-EVHGKLDIGFFRKHSHDLVPLTNFFTTDPEIDRVLIKVRDI-- 174
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
L+++ +P ++ N G R L VR ++ G E+M+I
Sbjct: 175 --LRKNHVPAYDEIHNKGEVRYLDVRRSKASG------------------EIMVIL---- 210
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
++ EF +L K + +T++V+ + +NV L
Sbjct: 211 -----VCLHKEFPQLKKVTKEISEIKG----VTSVVLNHNPKKTNVILGKKDYLLW---- 257
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
GEP+ I D I ++ F ISP +FFQ+N+L +LY L ADL PD ++
Sbjct: 258 --GEPQ---------ITDKIGDVSFKISPQSFFQINSLQTPRLYDLAIQKADLKPDDVVI 306
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
D G GTIGL++A V V G+E+ AV DA+ NA++NGI N +V KAE+VM
Sbjct: 307 DAYSGIGTIGLSVAKHVKAVRGMEVIKPAVDDANANAKLNGINNAEYVVGKAEEVM 362
>gi|238854152|ref|ZP_04644499.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri
202-4]
gi|238833228|gb|EEQ25518.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri
202-4]
Length = 450
Score = 122 bits (307), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 151/356 (42%), Gaps = 75/356 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
LAH+ Y QLE K+N + +L K + K+ L
Sbjct: 82 LAHIKYDKQLEFKRNQVVNLLHKADLDN------------------------IKVSQTLP 117
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
SP GYRNK + V + K +GF + + V P + + K I
Sbjct: 118 SPEETGYRNKAQVPVR-EVHGKLDIGFFRKHSHDLVPLTNFFTTDPEIDRVLIKVRDI-- 174
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
L+++ +P ++ N G R L VR ++ G E+M+I
Sbjct: 175 --LRKNHVPAYDEIHNKGEVRYLDVRRSKASG------------------EIMVIL---- 210
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
++ EF +L K + +T++V+ + +NV L
Sbjct: 211 -----VCLHKEFPQLKKVTKEISEIKG----VTSVVLNHNPKKTNVILGKKDYLLW---- 257
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
GEP+ I D I ++ F ISP +FFQ+N+L +LY L ADL PD ++
Sbjct: 258 --GEPQ---------ITDKIGDVSFKISPQSFFQINSLQTPRLYDLAIQKADLKPDDVVI 306
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
D G GTIGL++A V V G+E+ AV DA+ NA++NGI N +V KAE+VM
Sbjct: 307 DAYSGIGTIGLSVAKHVKAVRGMEVIKPAVDDANANAKLNGINNAEYVVGKAEEVM 362
>gi|395729297|ref|XP_003775521.1| PREDICTED: LOW QUALITY PROTEIN: tRNA
(uracil(54)-C(5))-methyltransferase homolog [Pongo
abelii]
Length = 487
Score = 122 bits (306), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 98/314 (31%), Positives = 135/314 (42%), Gaps = 47/314 (14%)
Query: 356 GLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNV 414
GL C L I+ SP+V+GYRNK FSV L P TV + LG R+G + N+
Sbjct: 128 GLSCLLHPIIPSPVVSGYRNKSAFSVNQGLDGSPKTVEYDLGTXRDGNIVCVQSNHLKNI 187
Query: 415 SEIACKYASIFQEFLQQS-DLPVWNRFKNSGFWRQLTVREG--RSPGKPLDVENLEVNIS 471
E + A ++ L QS P R G+W +LTVR R + E++
Sbjct: 188 PEKHNQVAQYYEVVLPQSPKEPCLLR--EGGYWCELTVRTNSLRHTMAVITFHPQELSPE 245
Query: 472 EVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSN 531
E+++ E + EF K A +SP + HQ
Sbjct: 246 ELHVQETV----------------KEF--FIKGPGAVCDLTSPDFQESRTRFSHHQSTYQ 287
Query: 532 VAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYS 591
+ GEP D++ L+ CI P AFFQ+NT AE LY
Sbjct: 288 LL--------------FGEPHIFKDLL---------GLKVCICPDAFFQINTAGAEMLYX 324
Query: 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNC 651
+ G + + +T+L D+CCGTG I L LA + V+GI M AV DA + A NGI +
Sbjct: 325 IVGKLSGVNSNTILLDICCGTGVISLPLAQXISQVLGISMVGQAVEDARQTAAYNGITSF 384
Query: 652 RFVCAKAEDVMGSL 665
F +AE G L
Sbjct: 385 EFHTGQAEIFPGLL 398
>gi|282851234|ref|ZP_06260599.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri
224-1]
gi|311110290|ref|ZP_07711687.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri
MV-22]
gi|282557202|gb|EFB62799.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri
224-1]
gi|311065444|gb|EFQ45784.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri
MV-22]
Length = 448
Score = 122 bits (306), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 151/356 (42%), Gaps = 75/356 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
LAH+ Y QLE K+N + +L K + K+ L
Sbjct: 82 LAHIKYDKQLEFKRNQVVNLLHKADLDN------------------------IKVSQTLP 117
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
SP GYRNK + V + K +GF + + V P + + K I
Sbjct: 118 SPEETGYRNKAQVPVR-EVHGKLDIGFFRKHSHDLVPLTNFFTTDPEIDRVLIKVRDI-- 174
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
L+++ +P ++ N G R L VR ++ G E+M+I
Sbjct: 175 --LRKNHVPAYDEIHNKGEVRYLDVRRSKASG------------------EIMVIL---- 210
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
++ EF +L K + +T++V+ + +NV L
Sbjct: 211 -----VCLHKEFPQLKKVTKEISEIKG----VTSVVLNHNPKKTNVILGKKDYLLW---- 257
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
GEP+ I D I ++ F ISP +FFQ+N+L +LY L ADL PD ++
Sbjct: 258 --GEPQ---------ITDKIGDVSFKISPQSFFQINSLQTPRLYDLAIQKADLKPDDVVI 306
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
D G GTIGL++A V V G+E+ AV DA+ NA++NGI N +V KAE+VM
Sbjct: 307 DAYSGIGTIGLSVAKHVKAVRGMEVIKPAVDDANANAKLNGINNAEYVVGKAEEVM 362
>gi|352517636|ref|YP_004886953.1| putative RNA methyltransferase [Tetragenococcus halophilus NBRC
12172]
gi|348601743|dbj|BAK94789.1| putative RNA methyltransferase [Tetragenococcus halophilus NBRC
12172]
Length = 457
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 106/375 (28%), Positives = 162/375 (43%), Gaps = 79/375 (21%)
Query: 301 RDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCK 360
R + PL+H+ Y QL K+ + +LKK + +PE +
Sbjct: 81 RTGIAPLSHLKYEQQLVFKQEQVRNVLKKTAK-----------MPE------------IQ 117
Query: 361 LEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
+E +G GYRNK + + + GF N E + P+D + + A
Sbjct: 118 VEKTIGMQQPFGYRNKAQIPIR-KIDGILQTGFYRKNSHELI-----PIDHFFIQDPAID 171
Query: 421 YASI-FQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVM 479
A I +E LQQ ++ +N NSGF R + +R G + E+M
Sbjct: 172 AAIIVIREILQQFEVKAYNEKNNSGFLRHIVIRRGY------------------HTHEMM 213
Query: 480 LIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL 539
++ F E++A+A LP +IQ N+ P +
Sbjct: 214 VVLVTRKEHFFQG------EKIAQAI-------QEKLPEVVSIIQ------NINPKQTNV 254
Query: 540 RLLSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWA 597
L GE E+ V+ R ++D + + IS +F+QVNT AE LY + A
Sbjct: 255 IL-------GEQEK---VLLGRSYVYDQLLGKTYRISAKSFYQVNTPQAEVLYQKAFELA 304
Query: 598 DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAK 657
DL ++ D G GTIGL+LA++V V G+E AV DA NA++NGIKN +V K
Sbjct: 305 DLKKSDVVIDAYSGIGTIGLSLANQVAHVYGMETIKQAVIDAQENAKLNGIKNAEYVTGK 364
Query: 658 AEDVMGSLLKDYLNP 672
AED+M +D ++P
Sbjct: 365 AEDIMPRWKEDGIHP 379
>gi|268319959|ref|YP_003293615.1| 23S rRNA (uracil-5-)-methyltransferase RumA2 [Lactobacillus
johnsonii FI9785]
gi|262398334|emb|CAX67348.1| 23S rRNA (uracil-5-)-methyltransferase RumA2 [Lactobacillus
johnsonii FI9785]
Length = 449
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 102/357 (28%), Positives = 155/357 (43%), Gaps = 77/357 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
LAH+ Y QLE K+N + +L K + KA G ++P
Sbjct: 82 LAHIKYDKQLEFKRNQVVNLLHKADLDNVKA---GQTMP--------------------- 117
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
SP GYRNK + V + K +GF + + V P + + K I
Sbjct: 118 SPEETGYRNKAQVPVR-EVNGKLDIGFFRKHSHDLVPLTNFFTTDPEIDRVLLKVRDI-- 174
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
L+ + +P ++ +N G R L VR ++ G E+M+I
Sbjct: 175 --LRNNHVPAYDENRNKGEVRYLEVRHSKATG------------------EIMVIL---- 210
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLP-LTALVIQDHQGVSNVAPADAPLRLLSIP 545
++ +F +L G T + +T++V+ + +NV L
Sbjct: 211 -----VCLHKDFPQLK-----GVTKEISEIKGVTSVVLNHNPKKTNVILGKKDYLLW--- 257
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
GEP+ I D I ++ F ISP +FFQ+N+L +LY L ADL PD ++
Sbjct: 258 ---GEPQ---------ITDKIGDVSFKISPQSFFQINSLQTPRLYDLAIQKADLKPDDVV 305
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
D G GTIGL++A V V G+E+ AV DA+ NA++NGI N +V KAE+VM
Sbjct: 306 IDAYSGIGTIGLSVAKHVKAVRGMEVIKPAVEDANANAKLNGITNAEYVVGKAEEVM 362
>gi|227889470|ref|ZP_04007275.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
johnsonii ATCC 33200]
gi|227849948|gb|EEJ60034.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
johnsonii ATCC 33200]
Length = 450
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 153/356 (42%), Gaps = 75/356 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
LAH+ Y QLE K+N + +L K + K G ++P
Sbjct: 82 LAHIKYDKQLEFKRNQVVNLLHKADLDNVKV---GQTMP--------------------- 117
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
SP GYRNK + V + K +GF + + V P + + K I
Sbjct: 118 SPEETGYRNKAQVPVR-EVNGKLDIGFFRKHSHDLVPLTSFFTTDPEIDRVLIKVRDI-- 174
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
L+++ +P ++ N G R L VR ++ G E+M+I
Sbjct: 175 --LRKNHVPAYDEIHNKGEARYLEVRRSKATG------------------EIMVIL---- 210
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
++ +F +L + + +T++V+ + +NV L
Sbjct: 211 -----VCLHKDFPQLKEVTKEISEIKG----VTSVVLNHNPKKTNVILGKKDYLLW---- 257
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
GEP+ I D I N+ F ISP +FFQ+N+L +LY L ADL PD ++
Sbjct: 258 --GEPQ---------ITDKIGNVSFKISPQSFFQINSLQTPRLYDLAIQKADLKPDDVVI 306
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
D G GTIGL++A V V G+E+ AV DA+ NA++NGI N +V KAE+VM
Sbjct: 307 DAYSGIGTIGLSVAKHVKAVRGMEVIKPAVEDANANAKLNGITNAEYVVGKAEEVM 362
>gi|123470775|ref|XP_001318591.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121901354|gb|EAY06368.1| hypothetical protein TVAG_151750 [Trichomonas vaginalis G3]
Length = 534
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 99/324 (30%), Positives = 149/324 (45%), Gaps = 58/324 (17%)
Query: 373 YRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVD-CPNVSEIACKYASIFQEFLQQ 431
YRNK E +VG L+ VGF LG+ E V A P+D C NV ++A A F +F+
Sbjct: 193 YRNKVEMTVGADLEGNTVVGFNLGSKDEDVIA---PIDNCLNVPKVAPYLARKFTDFVTH 249
Query: 432 SDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDD 491
+ P+++R +NSG W+ +TVR L V + +V+ +V AQ++ +D
Sbjct: 250 AKSPIYDRSRNSGVWKFITVRTTEEGKTMLVVVVYKSEECQVDPDDV---AQLTETFQED 306
Query: 492 AVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEP 551
V+S + L + + P L ++ A + LR L
Sbjct: 307 --VDSLY--LCETTKYEGYGNDPVFTL----------LNGTATIEEKLRGLKF------- 345
Query: 552 EESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCG 611
IS + F FQ NT AE L+S A++ T+L DVCCG
Sbjct: 346 -------------DISPMSF-------FQTNTPGAEILFSRVESLAEVDKSTVLIDVCCG 385
Query: 612 TGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLN 671
TG IGL++A + VIGI++ A+ DA +NA N IKN F+ A A+DV+ +L
Sbjct: 386 TGVIGLSMAKKAKKVIGIDIEKDAIEDAKKNATKNKIKNAEFIAAPAQDVLPGIL----- 440
Query: 672 PLREEDEHASEGSNKEITIAEEKD 695
D+ +EGS + + +D
Sbjct: 441 -----DQCEAEGSRVVVIVDPPRD 459
>gi|328724849|ref|XP_001948014.2| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog
[Acyrthosiphon pisum]
Length = 463
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 104/369 (28%), Positives = 162/369 (43%), Gaps = 67/369 (18%)
Query: 304 VTPLAHMSYSVQL---EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCK 360
VTPL M Y QL +H N++ + L+ NA+ + LP K
Sbjct: 65 VTPLCRMPYEKQLVLKQHWTNTVCKELRSRLHNAKTL----IRLP--------------K 106
Query: 361 LEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGN-FREGVTAVEEPVDCPNVSEIA 418
+ I SP +N YRNK EF+ + P T+GF + N +E + V + N+ +
Sbjct: 107 VFPISSSPQINKYRNKDEFNFRPGIDGNPKTLGFFVSNPTKENIYCVS-AMKLINMKQSH 165
Query: 419 CKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGK-PLDVENLEVNISEVNISE 477
A +F+ F+++S+LP + GFWR + VR K + V N +EV + E
Sbjct: 166 KDIAQVFEAFVRKSELPASYDHMDGGFWRGIIVRSNLKGDKMAIVVANPRGYANEVMLDE 225
Query: 478 VMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADA 537
F+D + S+ + + H + + D+
Sbjct: 226 --------QRKFNDYL--------------------KSININVQSLYFHPSLHTRSSKDS 257
Query: 538 PLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWA 597
L+ DG+ I++ + + +F ISP +FFQ+NTLAAE LY
Sbjct: 258 TFILV-----DGD---------KYIYEDLCSFKFRISPDSFFQINTLAAEVLYKELFKLI 303
Query: 598 DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAK 657
+L + L D+C GTGT+ + + V +GIE A AV+DA A+IN I NC F+ K
Sbjct: 304 NLTKTSTLLDLCSGTGTVSIIGSQHVQSCVGIESVAQAVNDAKETAKINNIHNCDFIEGK 363
Query: 658 AEDVMGSLL 666
E V+ +L
Sbjct: 364 VEMVLKQVL 372
>gi|340500371|gb|EGR27257.1| RNA m5u methyltransferase, putative [Ichthyophthirius multifiliis]
Length = 520
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 156/337 (46%), Gaps = 49/337 (14%)
Query: 344 LPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVT 403
+P+W+ + E K+ I + YRNK EF++G + + + VGF NF + +
Sbjct: 164 IPKWVTRKPE----EEKIIFIECTENFFNYRNKSEFTIGKNHKDEIRVGFNRTNFNKKIA 219
Query: 404 AVEEPV-DCPNVSEIACKYASIFQEFL--QQSDLPVWNRFKNSGFWRQLTVREGRSPGKP 460
+++ +C + E K A I QE++ QS+ V++RF + GFWR L VR+ +
Sbjct: 220 FIDDAQKNCLSTLE-QIKIAEILQEYIIQNQSNFQVYDRFTHKGFWRYLVVRQSFQTFQI 278
Query: 461 LDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLP--L 518
L + ++ + DD+ E+L T + P +
Sbjct: 279 L----------------INIVVKYEKEFSDDSK-----EKLKNELIPLFTQKNQFEPYNI 317
Query: 519 TALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAF 578
+L IQ+++ S+ P + I G P + I F ISP AF
Sbjct: 318 VSLNIQNYEDPSDSIPHNG-----KIENIYGNPNYD---------EIILGNTFKISPNAF 363
Query: 579 FQVNTLAAEKLYSLGGDWAD-LG---PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNAS 634
QV+T +KLY+L G+ +G +T+ D+C G GTIG+ LA + +IGIE +
Sbjct: 364 LQVHTKQCQKLYNLIGNIIQKIGISDQNTIFLDICSGIGTIGICLAQKAKQIIGIECVET 423
Query: 635 AVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLN 671
A D N +IN ++N + V K EDV+ ++++ +N
Sbjct: 424 ACQDCEENIKINNVQNYKVVQGKVEDVIQNVVQPLIN 460
>gi|42519575|ref|NP_965505.1| hypothetical protein LJ1698 [Lactobacillus johnsonii NCC 533]
gi|51316712|sp|Q74I68.1|Y1698_LACJO RecName: Full=Uncharacterized RNA methyltransferase LJ_1698
gi|41583864|gb|AAS09471.1| hypothetical protein LJ_1698 [Lactobacillus johnsonii NCC 533]
Length = 450
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 99/356 (27%), Positives = 153/356 (42%), Gaps = 75/356 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
LAH+ Y QLE K+N + +L K + K G ++P
Sbjct: 82 LAHIKYDKQLEFKRNQVVNLLHKADLDNVKV---GQTMP--------------------- 117
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
SP GYRNK + V + K +GF + + V P + + K I
Sbjct: 118 SPEETGYRNKAQVPVR-EVNGKLDIGFFRKHSHDLVPLTSFFTTDPEIDRVLIKVRDI-- 174
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
L+++ +P ++ N G R L VR ++ G E+M+I
Sbjct: 175 --LRKNHVPAYDEIHNKGEVRYLEVRRSKATG------------------EIMVIL---- 210
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
++ +F +L + + +T++V+ + +NV L
Sbjct: 211 -----VCLHKDFPQLKEVTKEISEIKG----VTSVVLNHNPKKTNVILGKKDYLLW---- 257
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
GEP+ I D I ++ F ISP +FFQ+N+L +LY L ADL PD ++
Sbjct: 258 --GEPQ---------ITDKIGDVSFKISPQSFFQINSLQTPRLYDLAIQKADLKPDDVVI 306
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
D G GTIGL++A V V G+E+ AV DA+ NA++NGI N +V KAE+VM
Sbjct: 307 DAYSGIGTIGLSVAKHVKAVRGMEVIEPAVEDANANAKLNGITNAEYVVGKAEEVM 362
>gi|300361143|ref|ZP_07057320.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus gasseri
JV-V03]
gi|300353762|gb|EFJ69633.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus gasseri
JV-V03]
Length = 448
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 151/356 (42%), Gaps = 75/356 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
LAH+ Y QLE K+N + +L K + K+ L
Sbjct: 82 LAHIKYDKQLEFKRNQVVNLLHKADLDK------------------------IKVSQTLP 117
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
SP GYRNK + V + + +GF + + V P + + K I
Sbjct: 118 SPEETGYRNKAQVPVR-EVHGELDIGFFRKHSHDLVPLTNFFTTDPEIDRVLIKVRDI-- 174
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
L+++ +P ++ N G R L VR ++ G E+M+I
Sbjct: 175 --LRKNHVPAYDEIHNKGEVRYLDVRRSKATG------------------EIMVIL---- 210
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
++ +F +L K + +T++V+ + +NV L
Sbjct: 211 -----VCLHKDFPQLKKVTKEISEIEG----VTSVVLNHNPKKTNVILGKKDYLLW---- 257
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
GEP+ I D I ++ F ISP +FFQ+N+L +LY L ADL PD ++
Sbjct: 258 --GEPQ---------ITDKIGDVSFKISPQSFFQINSLQTPRLYDLAIQKADLKPDDVVI 306
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
D G GTIGL++A V V G+E+ AV DA+ NA++NGI N +V KAE+VM
Sbjct: 307 DAYSGIGTIGLSVAKHVKAVRGMEVIKPAVDDANANAKLNGIMNAEYVVGKAEEVM 362
>gi|417838059|ref|ZP_12484297.1| RNA methyltransferase, TrmA family [Lactobacillus johnsonii pf01]
gi|338761602|gb|EGP12871.1| RNA methyltransferase, TrmA family [Lactobacillus johnsonii pf01]
Length = 450
Score = 119 bits (298), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 101/357 (28%), Positives = 155/357 (43%), Gaps = 77/357 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
LAH+ Y QLE K+N + +L K + K G ++P
Sbjct: 82 LAHIKYDKQLEFKRNQVVNLLHKADLDNVKV---GHTMP--------------------- 117
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
SP GYRNK + V + K +GF + + V P + + K I
Sbjct: 118 SPEETGYRNKAQVPVR-EVNGKLDIGFFRKHSHDLVPLTNFFTTDPEIDRVLLKVRDI-- 174
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
L+ + +P ++ +N G R L VR ++ G E+M+I
Sbjct: 175 --LRNNHVPAYDENRNKGEVRYLEVRHSKATG------------------EIMVIL---- 210
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLP-LTALVIQDHQGVSNVAPADAPLRLLSIP 545
++ +F +L G T + +T++V+ + +NV L
Sbjct: 211 -----VCLHKDFPQLK-----GVTKEISEIKGVTSVVLNHNPKKTNVILGKKDYLLW--- 257
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
GEP+ I D I ++ F ISP +FFQ+N+L +LY+L ADL PD ++
Sbjct: 258 ---GEPQ---------ITDKIGDVSFKISPQSFFQINSLQTPRLYNLAIQKADLKPDDVV 305
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
D G GTIGL++A V V G+E+ AV DA+ NA++NGI N +V KAE+VM
Sbjct: 306 IDAYSGIGTIGLSVAKHVKAVRGMEVIKPAVEDANANAKLNGITNAEYVVGKAEEVM 362
>gi|126272598|ref|XP_001369338.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog [Monodelphis
domestica]
Length = 469
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 117/416 (28%), Positives = 170/416 (40%), Gaps = 65/416 (15%)
Query: 254 GNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLKVKSARDVVTPLAHMSYS 313
G+ + SA P + A A A+ D E LA D+VTPL + Y
Sbjct: 23 GSPRAWLSSACPEKAAVAPAAEEWGPDPGSWPERLA------------DLVTPLWRLDYE 70
Query: 314 VQLEHKKNSIAQMLKKLTRNARK-ACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNG 372
QL K +++ +L+ L R P+G E G L +L+ SP+++G
Sbjct: 71 QQLRVKTDALRGLLQWLEGRLRLLGSPDG-----------EAGVLCSRLQPFRPSPVLHG 119
Query: 373 YRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQ 431
YRNKC F+V +P TVG++LG+ E P ++ + + A +Q+FL+Q
Sbjct: 120 YRNKCNFAVRQGPDGRPRTVGYVLGSGGEQQPVCVRPGHLKHIPDAHQRVARCYQDFLEQ 179
Query: 432 SDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDD 491
+ L + SG W +LTVR + M I
Sbjct: 180 TPLDPYLDSDASGHWHELTVR-------------------STSQGHTMAIVTFQLQGLSP 220
Query: 492 AVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEP 551
+ E L + F G A L +L Q+ G P +LL+ G P
Sbjct: 221 EELQEPQEELREFFTRGPGAIC---ELASLYFQERSG-DQQQPC---YQLLA-----GNP 268
Query: 552 EESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCG 611
D + +F ISP AFFQ+N+ A E LY + G+ + P+TLL D+ G
Sbjct: 269 YLFED---------LPGFKFRISPGAFFQINSAAVEVLYRVVGELIGVDPNTLLLDLSQG 319
Query: 612 TGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLK 667
TG L+LA V+ + AV DA NGI N F E+V+ LLK
Sbjct: 320 TGATSLSLAPHTSQVLSTGLVGQAVEDAKWTTAFNGITNWEFHADHVENVVPQLLK 375
>gi|328773587|gb|EGF83624.1| hypothetical protein BATDEDRAFT_34298 [Batrachochytrium
dendrobatidis JAM81]
Length = 823
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 114/445 (25%), Positives = 194/445 (43%), Gaps = 87/445 (19%)
Query: 181 NLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV-VP 239
++KK L + I Y++ KK + F++ + ++ ++++G+ + ++V+N P
Sbjct: 237 DIKKLLTQNEISYRNVKKGPKWEYAIIAFDTEDHMEACRKKMQGMLYKKRVIEVSNANAP 296
Query: 240 RSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLKVKS 299
R+ PM ++ E +D DE L
Sbjct: 297 RT-----NKPM------RRGDEIT--------------DDDQRTPDERLF---------- 321
Query: 300 ARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRN----ARKACPNGVSLPEWIMKSREIG 355
D VTPL + Y QL K+ ++ +L K T+ ++ + P+ + E +++ E+
Sbjct: 322 --DQVTPLWRLPYEQQLVQKQKTMTNILNKYTKEMINVSQPSSPHSKATRELLLQKAEMS 379
Query: 356 -----------GLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTA 404
GL +L I SP+ GYR KCEFS G + VGF+LG F++G T+
Sbjct: 380 WVRKAKAAYNRGLLFQLNDIHPSPVTEGYRTKCEFSFGKDPNGEIAVGFLLGGFKDGTTS 439
Query: 405 VEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVE 464
+ P C +VS+ A K ++I + + S LPV++R SG+WR VR S GK
Sbjct: 440 IMGPNKCVHVSDTAKKISTILEGLAETSKLPVYDRETKSGYWRLAQVRTP-STGKN---- 494
Query: 465 NLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQ 524
M+ QV A +D+A ++E LAKA S LP I
Sbjct: 495 --------------MVFLQV--ALYDEA-TDAETSALAKA------EKSRILPY----IN 527
Query: 525 DHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVE--ARIHDSISNLRFCISPTAFFQVN 582
+ ++ + + S +P +S ++++ + + + + + F IS +FFQ+N
Sbjct: 528 EQAEKLGISIENVLYQESSALFCGFKPSDSFEILQGSSTVTEKLFDYTFKISSDSFFQIN 587
Query: 583 TLAAEKLYSLGGDWADLGPDTLLFD 607
T A E LYS+ D P FD
Sbjct: 588 TPATEVLYSIVKDLCLSSPVLRDFD 612
Score = 76.3 bits (186), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 50/73 (68%)
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659
G +T+L D+CCGTGTIG+TLA V+G+E+ A+ +A NA+ NG+ N ++C K E
Sbjct: 663 GSNTVLLDLCCGTGTIGITLASHFKKVVGVELVQEAIDNAIVNAQDNGVTNAVYLCGKVE 722
Query: 660 DVMGSLLKDYLNP 672
+ +G + ++++ P
Sbjct: 723 EKIGEVFRNHVGP 735
>gi|409385220|ref|ZP_11237905.1| RNA methyltransferase, TrmA family [Lactococcus raffinolactis 4877]
gi|399207348|emb|CCK18820.1| RNA methyltransferase, TrmA family [Lactococcus raffinolactis 4877]
Length = 455
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 113/418 (27%), Positives = 179/418 (42%), Gaps = 81/418 (19%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDG----SGLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGE+ E G + G G E + + + R + H++Y+ QL
Sbjct: 35 ENALPGEMIEMRVLKTGKKFGFGKVETYLTTSEHRVTDINLDYLRTGIADFGHLAYTEQL 94
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K+ I ++L K A KA P LE I SP V YRNK
Sbjct: 95 KFKRKQIVELLSK---TAHKA------------------DFPV-LEAI-ASPDVTKYRNK 131
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
V S+ GF + V + + P + E+ ++ L++ L
Sbjct: 132 ASIPVR-SVNGVLETGFFRKHSHTLVPVEDFFIQQPEIDEVVIAV----RDLLRKFGLKA 186
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFD--DAVV 494
+N +N+GF R + VR + G E+M+I A+F D ++
Sbjct: 187 YNEIENTGFVRNVVVRRAHATG------------------EIMVIFVTRKASFFKVDGLL 228
Query: 495 NSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEES 554
N+ L K F P ++Q+ N + + +I +D
Sbjct: 229 NA----LTKQF-----------PAIKSIMQN----VNASTGN------NIFGSDWNVLFG 263
Query: 555 NDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGT 614
D I D + ++ IS +F+QVNT AAE LY+ ++ADL + ++ D G GT
Sbjct: 264 QDF----ITDIMLERKYDISAPSFYQVNTPAAEVLYAKAIEFADLNAEDVVIDAYSGIGT 319
Query: 615 IGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
IGL+ A +V V G+E+ +AV +A +NAE+NGI N +V KAE VMG + + + P
Sbjct: 320 IGLSFADKVKHVYGVEVVEAAVENARKNAELNGIDNVTYVTGKAEKVMGDWVIEGVKP 377
>gi|321471308|gb|EFX82281.1| hypothetical protein DAPPUDRAFT_302582 [Daphnia pulex]
Length = 463
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 99/369 (26%), Positives = 152/369 (41%), Gaps = 57/369 (15%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
D VTPL + Y+ QLE K +++ KLT+ + P+ G+ C+L
Sbjct: 58 DAVTPLWRIPYAEQLEIKDKRNFEIMTKLTQRLKPHSPSK--------------GIICQL 103
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKY 421
+ L SP+ YRNK +F + Y + VG +G + + N
Sbjct: 104 KETLPSPVTLHYRNKNDFHIRYDSSGRVVVGLCVGKASRQTLRCIKADNLFNTHPTHTDV 163
Query: 422 ASIFQEFLQ-QSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
A + QE++Q +S V F+ G WR + VR E+M+
Sbjct: 164 ARVVQEYIQHESKWKVCEHFQRGGNWRSVLVRSNHK-------------------FELMV 204
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
I + ++ + SE ER+ A + V G + P
Sbjct: 205 IVTIHPQDLEEEEIRSEMERMKDYLLASSMGKQ-----IVSVYYQASGHTRATAEQCPFN 259
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
LL + I++ I + F ISP +FFQ+NT AA LY L
Sbjct: 260 LLH--------------GHSHIYERIGDYEFRISPESFFQINTEAARLLYDTVA--LQLA 303
Query: 601 PDTL--LFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658
P + + D+CCGTGT GL +A VIG+E++ SAV DA NA N I+N F+ +A
Sbjct: 304 PQRMSTVVDLCCGTGTQGLMVARHSRGVIGVELSRSAVEDARFNAAHNQIQNAEFIAGRA 363
Query: 659 EDVMGSLLK 667
E + +++
Sbjct: 364 EKLFKHIME 372
>gi|395244171|ref|ZP_10421145.1| 23S rRNA (Uracil-5-)-methyltransferase [Lactobacillus hominis CRBIP
24.179]
gi|394483620|emb|CCI82153.1| 23S rRNA (Uracil-5-)-methyltransferase [Lactobacillus hominis CRBIP
24.179]
Length = 448
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 97/356 (27%), Positives = 152/356 (42%), Gaps = 75/356 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
LAH+ Y QLE K+N + +L K + + G +LP
Sbjct: 82 LAHIKYDKQLEFKRNQVVNLLHKADLDKIEV---GQTLP--------------------- 117
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
SP GYRNK + V ++ + +GF + + V P + + I +
Sbjct: 118 SPQEVGYRNKAQVPVR-KVKGQLDIGFFRRHSHDLVPLTNFFTTDPEIDRVLVAVRDILR 176
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
++ ++P ++ N G R L VR ++ G E+M+I
Sbjct: 177 KY----NVPAYDEIHNKGEIRYLDVRRSKATG------------------EIMVIL---- 210
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
++ +FE L + +T++V+ + +NV L
Sbjct: 211 -----VALHKDFEHLQDITQEISQIDK----VTSIVLNHNPKKTNVILGKKDYLLW---- 257
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
GEP+ I D I ++ F ISP +FFQ+N+L +LY L ADL PD ++
Sbjct: 258 --GEPQ---------ITDKIGDVSFKISPQSFFQINSLQTPRLYDLAIQKADLKPDDVVI 306
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
D G GTIGL++A V V G+E+ AV DA+ NA++NGI N +V KAE+VM
Sbjct: 307 DAYSGIGTIGLSVAKHVKAVRGMEVIKPAVDDANANAKLNGITNAEYVVGKAEEVM 362
>gi|451821985|ref|YP_007458186.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451787964|gb|AGF58932.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 452
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 144/306 (47%), Gaps = 51/306 (16%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACKY 421
GI+GSP YRNK EF+ G + P ++G + G+ V+ DC V E K
Sbjct: 114 GIMGSPDQWEYRNKMEFTFGDEAKGAPLSLGMHMRGKSFGIVTVD---DCKLVDEDYRKI 170
Query: 422 ASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLI 481
+ E+ + +DLP + K G+ R L +R+ ++ G+ +L+
Sbjct: 171 IKLTVEYFRGTDLPYYRVMKAEGYLRHLVIRKAQNTGE-------------------ILV 211
Query: 482 AQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRL 541
V++ D + E+ +L K Q ++G N+ + L
Sbjct: 212 NLVTTTQIDFDL--GEYVKLLKD-------------------QSYKG--NLV---SILHT 245
Query: 542 LSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
+ ++D E +V+ + I +++ L+F ISP +FFQ NT AE LYS+ D+
Sbjct: 246 ENDSRSDAVIPEKVNVLHGKDYIRETLLGLQFNISPFSFFQTNTKGAESLYSIVKDFMGD 305
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659
D ++FD+ CGTGTIG +A V+GIE+ AV A NA++NG+ NC F+
Sbjct: 306 SQDKVVFDLYCGTGTIGQIVAPNAKKVVGIELIEEAVEAAKENAKLNGLNNCEFLAGDVA 365
Query: 660 DVMGSL 665
+++ ++
Sbjct: 366 EIIKTI 371
>gi|227893050|ref|ZP_04010855.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
ultunensis DSM 16047]
gi|227865163|gb|EEJ72584.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
ultunensis DSM 16047]
Length = 450
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 97/359 (27%), Positives = 153/359 (42%), Gaps = 81/359 (22%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
LAH+ Y QL K+N + +LKK + E+G L
Sbjct: 84 LAHIKYEKQLVFKRNQVVNLLKKAH-----------------LDDIEVGQ-------TLA 119
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
SP GYRNK + V ++ K +GF + + V P + + +
Sbjct: 120 SPEQKGYRNKAQVPVR-EVKGKLEIGFFRRHSHDLVPLTNFFTTDPEIDRVLVA----VR 174
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
+ L+++ +P ++ N G R L VR ++ G E+M+I
Sbjct: 175 DVLRRNQVPAYDEIHNKGEVRYLDVRRSKATG------------------EIMVIL---- 212
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
++++F +L + A +P +I +H PK
Sbjct: 213 -----VCLHNDFVQLPRV-----AAEISQIPGVTSIILNHN-----------------PK 245
Query: 547 ADGEPEESNDVV---EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDT 603
D V + I D I NL+F ISP +FFQ+N+L +LY+L + ADL P
Sbjct: 246 KTNVILGQKDYVVYGDDHITDQIGNLKFRISPKSFFQINSLQTPRLYNLAIEKADLKPSD 305
Query: 604 LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
++ D G GTIGL++A V V G+E+ A AV DA+ NA++N I N ++V KAE++M
Sbjct: 306 VVVDAYSGIGTIGLSVAKHVKAVRGMEVIADAVRDANANAKLNNISNAKYVTGKAEEIM 364
>gi|268567047|ref|XP_002647704.1| Hypothetical protein CBG17893 [Caenorhabditis briggsae]
Length = 546
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 118/421 (28%), Positives = 179/421 (42%), Gaps = 96/421 (22%)
Query: 182 LKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRS 241
L+K L D KS K + ++ F++ E + A++ L G N L A + +
Sbjct: 38 LEKILGD----VKSKKVRHMSDYAYITFDTPEDAQKAIQLLNGYEYKNSVL--AAHLATT 91
Query: 242 FDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLKVKSAR 301
KN+++P K +E AV K+AR
Sbjct: 92 EVKNLRAP------TKNNTEPAVQ--------------------------------KTAR 113
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
+ VTPLA M Y QLE K+ + +++ KL ++ N V E I K E +L
Sbjct: 114 ESVTPLAEMEYEKQLELKQQNSVKVMNKLHEQLQR---NKV---EKIGKQTEFRK---RL 164
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKY 421
+ IL SP GYRNKCEF++G+ L +GF+ G F E V P++ VS
Sbjct: 165 QQILPSPKTTGYRNKCEFTIGHDLNTDICIGFVGGRFAENRHFVIPPLNVDIVSPQMMSI 224
Query: 422 ASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLI 481
EF+++++L ++ F+ GFWR LTVRE +VMLI
Sbjct: 225 VGDAHEFVKETELAPFDEFERKGFWRLLTVREFG--------------------GDVMLI 264
Query: 482 AQVSSATFDDAVVNSEFE-RLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAP-L 539
V D A E + ++AK F T +S + ++ Q+ +S D P
Sbjct: 265 FTVFP--LDSAEKTEEVQKKIAKRFMDFETFTSKKYRVCSIYWQEMVHIS-----DTPNF 317
Query: 540 RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
+L++ G P I++S+ + RF +SP AFFQ N+ A LYS G+ L
Sbjct: 318 KLIA-----GTP---------YIYESLLDCRFRVSPPAFFQTNSQGASVLYSTIGELCGL 363
Query: 600 G 600
Sbjct: 364 A 364
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVG-----MVIGIEMNASAVSDAHRNAEINGI-KNCRFV 654
P T+L D+CCGTGTIG L + +GIEM AV DA +NA+ N + K C+++
Sbjct: 438 PGTILLDICCGTGTIGQCLLKNIENTQKVFCVGIEMITEAVEDAKQNAKQNKMEKCCKYI 497
Query: 655 CAKAEDVMGSL 665
KAED S+
Sbjct: 498 AGKAEDTFRSM 508
>gi|148688456|gb|EDL20403.1| RIKEN cDNA 4732479N06, isoform CRA_a [Mus musculus]
Length = 349
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 139/313 (44%), Gaps = 43/313 (13%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
DVVTPL +SY QL+ K + ++L+ L + + +GVS + + + GL C L
Sbjct: 75 DVVTPLWRLSYEAQLKVKFEAQKKLLQSLESHLKVL--HGVSD---TVAAHQSEGLRCLL 129
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
I+ SP GYRNK FSV S P TVG+ LG +++G N+ E +
Sbjct: 130 HPIIPSPTTTGYRNKSTFSVYRSPDGNPKTVGYYLGTWKDGNVVCLPCNHLKNIPEKHSQ 189
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
A ++ FL+QS + F G WR+L VR R M
Sbjct: 190 VAQYYEVFLRQSSVEPCLLFHEGGHWRELVVRTNRQ-------------------GHTMA 230
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
I + V + L F G A LT+L Q+ ++ + +P +
Sbjct: 231 IVTFHPQGLSEEEVCVQKVTLKDFFTKGPGAIC---ELTSLYFQE-STMTRCSHQQSPYQ 286
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
LL GEP D++ +I ISP AFFQ+NT AE LY + G+ + +
Sbjct: 287 LLF-----GEPHIFEDLLGLKIR---------ISPDAFFQINTAGAEMLYRIIGELSGVN 332
Query: 601 PDTLLFDVCCGTG 613
++LL D+CCGTG
Sbjct: 333 SESLLLDICCGTG 345
>gi|383754875|ref|YP_005433778.1| putative RNA methyltransferase [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381366927|dbj|BAL83755.1| putative RNA methyltransferase [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 457
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 101/362 (27%), Positives = 153/362 (42%), Gaps = 76/362 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLP-CKLEGIL 365
L H+ Y QL+ K+ Q++ +TR IG P +E +
Sbjct: 88 LQHLDYMAQLQAKRQ---QVIDAVTR---------------------IGKQPDLHVEPTI 123
Query: 366 GSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF 425
G+ YRNK +F +G + ++G F +G + + DC E + +
Sbjct: 124 GAATPWNYRNKMQFPIG-----RDKGKTIIGCFAQGSHEIIDTTDCHIQKEGNNEVVNAV 178
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
+E + + ++PV+N K++G R + R GR+ ++M++ +
Sbjct: 179 REIVTKLNIPVYNEDKHTGVLRHVVGRVGRN-------------------GDIMVVIVTA 219
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
+ T EF ++ +A LP V Q+ Q N +LL
Sbjct: 220 TKTMPK---EKEFVKMLRA----------RLPKVVSVHQNIQTYHNNVIMGRDTKLLW-- 264
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
G P I DSI L F ISP +FFQVNT AE LYS ++A+L +
Sbjct: 265 ---GRPT---------IQDSIGRLNFHISPRSFFQVNTSQAEVLYSKALEYANLTGQETV 312
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
D CGTGTI L LA + VIGIE+ A+ DA +NA N ++N F+ A VM L
Sbjct: 313 IDAYCGTGTITLFLAQKAHSVIGIEIVKPAILDAQKNARDNNVRNAEFIVGDATKVMPRL 372
Query: 666 LK 667
K
Sbjct: 373 FK 374
>gi|257869904|ref|ZP_05649557.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus gallinarum
EG2]
gi|257804068|gb|EEV32890.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus gallinarum
EG2]
Length = 467
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 101/373 (27%), Positives = 153/373 (41%), Gaps = 75/373 (20%)
Query: 301 RDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCK 360
R + PL+H+ Y QL K+ + +L K+ + P LP M+
Sbjct: 91 RTGIAPLSHLKYEKQLAFKQQQVENVLAKVAK-----MPQVEVLPTIGMEQ--------- 136
Query: 361 LEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
P GYRNK + V ++ + T GF N V + + P + +
Sbjct: 137 -------PF--GYRNKAQIPVQ-KIKGQLTTGFYRKNSHTLVPIEDFYIQDPAIDQAIVT 186
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
+I Q F ++ +N + GF R + +R G G E+M+
Sbjct: 187 VRNILQRF----NVKAYNEEAHEGFLRHVVIRRGHHSG------------------EMMV 224
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSNVAPADAPL 539
I A F E +A+ LP VIQ+ ++ +NV D
Sbjct: 225 ILVTRKAKFFKG------EEIAEVI-------HEELPEVVSVIQNINEEKTNVIMGDVEK 271
Query: 540 RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
L +A I D + + F IS +F+QVNT E LY + ADL
Sbjct: 272 VLYG---------------KASIDDQLFDKTFQISAKSFYQVNTAQTEVLYQKAFELADL 316
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659
PD ++ D G GTIG++LA RV V+G+E+ A AV DA NA NG++N + KAE
Sbjct: 317 QPDDIVVDAYAGIGTIGISLADRVQEVLGMEVVAEAVEDAKANAARNGLENVHYFVGKAE 376
Query: 660 DVMGSLLKDYLNP 672
+M L++ + P
Sbjct: 377 KIMPQWLREGIQP 389
>gi|225019491|ref|ZP_03708683.1| hypothetical protein CLOSTMETH_03444 [Clostridium methylpentosum
DSM 5476]
gi|224947712|gb|EEG28921.1| hypothetical protein CLOSTMETH_03444 [Clostridium methylpentosum
DSM 5476]
Length = 467
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 147/321 (45%), Gaps = 50/321 (15%)
Query: 352 REIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDC 411
R IGG+ +E IL +P GYRNK +F V K GF + + V DC
Sbjct: 116 RRIGGIDLTVERILSNPHTEGYRNKAQFPVALR-DGKAVAGF----YAKRSHRVVPCGDC 170
Query: 412 PNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNIS 471
S + +F+ + LP ++ ++G R L +RE + G
Sbjct: 171 RLQSPAFAPLVRVILDFIDEYHLPPYDETNHTGLIRNLYLREAPATG------------- 217
Query: 472 EVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSN 531
E+ + V + SA + LA+ A +P + + LV ++ Q +N
Sbjct: 218 EIMVCLVATKKHIPSA-----------DELARRL----VACNPKVK-SVLVNRNSQK-TN 260
Query: 532 VAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYS 591
V D G+P IHD + + +SP +F+QVN+L AE+LY
Sbjct: 261 VILGD------RCSVVWGKPV---------IHDVLRGVDVELSPLSFYQVNSLQAERLYD 305
Query: 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNC 651
L ++A L + L D+ CG GTIGL++A + VIG+E+ AV DA R+A+ NG++N
Sbjct: 306 LAEEYAHLTGEETLVDLYCGAGTIGLSMAGKAKRVIGVEIIPVAVEDARRSAQRNGVRNA 365
Query: 652 RFVCAKAEDVMGSLLKDYLNP 672
F+CA A++ SL + L P
Sbjct: 366 EFLCADAKEAARSLAQQGLRP 386
>gi|300854061|ref|YP_003779045.1| tRNA (uracil-5-) -methyltransferase, SAM-dependent [Clostridium
ljungdahlii DSM 13528]
gi|300434176|gb|ADK13943.1| tRNA (uracil-5-) -methyltransferase, SAM-dependent [Clostridium
ljungdahlii DSM 13528]
Length = 450
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 91/315 (28%), Positives = 144/315 (45%), Gaps = 59/315 (18%)
Query: 359 CKLE--GILGSPLVNGYRNKCEFSVGYSLQA-KPTVGFMLGNFREGVTAVEEPVDCPNVS 415
C E GI SP GYRNK EFS G + + T+G + GV V+ N +
Sbjct: 108 CDFEFLGIEKSPEKTGYRNKMEFSFGDEQRGGQLTLGMHIKGRSFGVVNVD------NCN 161
Query: 416 EIACKYASIFQE---FLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISE 472
+ + I + + ++ +LP + + G+ R L +R+GR+ G+ L
Sbjct: 162 LVDADFTLILDKVVTYFREKNLPYYKIKNHEGYLRNLVLRKGRNTGEIL----------- 210
Query: 473 VNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNV 532
+NI S FD F +L + T L ++ + +S++
Sbjct: 211 INI------VTTSQIQFD----LDGFNKLLQVLNYKGT-------LVGILHTVNDNLSDM 253
Query: 533 APADAPLRLLSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLY 590
AD + +++ R I + I L+F ISP +FFQ N+ EKLY
Sbjct: 254 VKAD-----------------NVEILYGRDYIMEEILGLKFKISPESFFQTNSRGTEKLY 296
Query: 591 SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKN 650
++ D+ +FD+ CGTGTIG L+ V VIG+E+ AV+ A+ NA++N IKN
Sbjct: 297 AMIKDFLGDASSKTVFDLYCGTGTIGQVLSSSVNKVIGVELIEKAVASANENAKLNNIKN 356
Query: 651 CRFVCAKAEDVMGSL 665
CRF+ +DV+ +L
Sbjct: 357 CRFIAGDVKDVLNTL 371
>gi|295692415|ref|YP_003601025.1| RNA methyltransferase [Lactobacillus crispatus ST1]
gi|295030521|emb|CBL50000.1| RNA methyltransferase [Lactobacillus crispatus ST1]
Length = 449
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 96/357 (26%), Positives = 155/357 (43%), Gaps = 77/357 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
LAH+ Y QLE K+N + +LKK + + G +LP
Sbjct: 82 LAHIKYDKQLEFKRNQVVNLLKKAHLDEIEV---GQTLP--------------------- 117
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
SP GYRNK + V + +GF + + V P + + +
Sbjct: 118 SPEQTGYRNKAQVPVR-EYNGQLEIGFFRRHSHDLVPLTNFFTTDPEIDRVLVA----VR 172
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
+ L++ + ++ N+G R L VR ++ G+ + V+L+++V
Sbjct: 173 DVLRKYKIAPYDEVNNTGIIRYLDVRRSKANGEIM----------------VILVSRVK- 215
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLP-LTALVIQDHQGVSNVAPADAPLRLLSIP 545
+F ++ G A +P ++ LV+ + +NV +
Sbjct: 216 ----------DFPQMT-----GVAAEISQIPKVSGLVLNYNPKKTNVILGKKDYLVFG-- 258
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
ND +I D I +L+F ISP +FFQ+N+L +LY L ADLG D ++
Sbjct: 259 ---------ND----QITDQIGDLKFRISPQSFFQINSLQTPRLYDLAIKQADLGSDDVV 305
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
D G GTIGL++A V V GIE+ A+ DA NAE+NGI+N ++ KAE++M
Sbjct: 306 IDAYSGIGTIGLSVAKHVKAVRGIEVVRDAIKDAKDNAELNGIENAKYYLGKAEEIM 362
>gi|385826377|ref|YP_005862719.1| hypothetical protein [Lactobacillus johnsonii DPC 6026]
gi|329667821|gb|AEB93769.1| hypothetical protein LJP_1447c [Lactobacillus johnsonii DPC 6026]
Length = 450
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 153/356 (42%), Gaps = 75/356 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
LA++ Y QLE K+N + +L K + K G ++P
Sbjct: 82 LANIKYDKQLEFKRNQVVNLLHKADLDNVKV---GQTMP--------------------- 117
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
SP GYRNK + V + K +GF + + V P + + K I
Sbjct: 118 SPEETGYRNKAQVPVR-EVNGKLDIGFFRKHSHDLVPLTSFFTTDPEIDRVLIKVRDI-- 174
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
L+++ +P ++ N G R L VR ++ G E+M+I
Sbjct: 175 --LRKNHVPAYDEIHNKGEVRYLEVRRSKATG------------------EIMVIL---- 210
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
++ +F +L + + +T++V+ + +NV L
Sbjct: 211 -----VCLHKDFPQLKEVTKEISEIKG----VTSVVLNHNPKKTNVILGKKDYLLW---- 257
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
GEP+ I D I ++ F ISP +FFQ+N+L +LY L ADL PD ++
Sbjct: 258 --GEPQ---------ITDKIGDVSFKISPQSFFQINSLQTPRLYDLAIQKADLKPDDVVI 306
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
D G GTIGL++A V V G+E+ AV DA+ NA++NGI N +V KAE+VM
Sbjct: 307 DAYSGIGTIGLSVAKHVKAVRGMEVIEPAVEDANANAKLNGITNAEYVVGKAEEVM 362
>gi|227877027|ref|ZP_03995119.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
crispatus JV-V01]
gi|256844662|ref|ZP_05550147.1| RNA methyltransferase [Lactobacillus crispatus 125-2-CHN]
gi|227863398|gb|EEJ70825.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
crispatus JV-V01]
gi|256613203|gb|EEU18407.1| RNA methyltransferase [Lactobacillus crispatus 125-2-CHN]
Length = 449
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 96/357 (26%), Positives = 155/357 (43%), Gaps = 77/357 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
LAH+ Y QLE K+N + +LKK + + G +LP
Sbjct: 82 LAHIKYDKQLEFKRNQVVNLLKKAHLDEIEV---GQTLP--------------------- 117
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
SP GYRNK + V + +GF + + V P + + +
Sbjct: 118 SPEQTGYRNKAQVPVR-EYNGQLEIGFFRRHSHDLVPLTNFFTTDPEIDRVLVA----VR 172
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
+ L++ + ++ N+G R L VR ++ G+ + V+L+++V
Sbjct: 173 DVLRKYKIAPYDEVNNTGIIRYLDVRRSKANGEIM----------------VILVSRVK- 215
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLP-LTALVIQDHQGVSNVAPADAPLRLLSIP 545
+F ++ G A +P ++ LV+ + +NV +
Sbjct: 216 ----------DFPQMM-----GVAAEISQIPKVSGLVLNYNPKKTNVILGKKDYLVFG-- 258
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
ND +I D I +L+F ISP +FFQ+N+L +LY L ADLG D ++
Sbjct: 259 ---------ND----QITDQIGDLKFRISPQSFFQINSLQTPRLYDLAIKQADLGSDDVV 305
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
D G GTIGL++A V V GIE+ A+ DA NAE+NGI+N ++ KAE++M
Sbjct: 306 IDAYSGIGTIGLSVAKHVKAVRGIEVVRDAIKDAKDNAELNGIENAKYYLGKAEEIM 362
>gi|262047051|ref|ZP_06020010.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
crispatus MV-3A-US]
gi|293381908|ref|ZP_06627876.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
crispatus 214-1]
gi|312984350|ref|ZP_07791691.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
crispatus CTV-05]
gi|423318076|ref|ZP_17295973.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
crispatus FB049-03]
gi|423321419|ref|ZP_17299291.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
crispatus FB077-07]
gi|260572628|gb|EEX29189.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
crispatus MV-3A-US]
gi|290921555|gb|EFD98589.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
crispatus 214-1]
gi|310894244|gb|EFQ43325.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
crispatus CTV-05]
gi|405595517|gb|EKB68905.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
crispatus FB077-07]
gi|405596915|gb|EKB70234.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
crispatus FB049-03]
Length = 449
Score = 116 bits (290), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 96/357 (26%), Positives = 155/357 (43%), Gaps = 77/357 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
LAH+ Y QLE K+N + +LKK + + G +LP
Sbjct: 82 LAHIKYDKQLEFKRNQVVNLLKKAHLDEIEV---GQTLP--------------------- 117
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
SP GYRNK + V + +GF + + V P + + +
Sbjct: 118 SPEQTGYRNKAQVPVR-EYNGQLEIGFFRRHSHDLVPLTNFFTTDPEIDRVLVA----VR 172
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
+ L++ + ++ N+G R L VR ++ G+ + V+L+++V
Sbjct: 173 DVLRKYKIAPYDEVNNTGIIRYLDVRRSKANGEIM----------------VILVSRVK- 215
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLP-LTALVIQDHQGVSNVAPADAPLRLLSIP 545
+F ++ G A +P ++ LV+ + +NV +
Sbjct: 216 ----------DFPQMM-----GVAAEISQIPKVSGLVLNYNPKKTNVILGKKDYLVFG-- 258
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
ND +I D I +L+F ISP +FFQ+N+L +LY L ADLG D ++
Sbjct: 259 ---------ND----QITDQIGDLKFRISPQSFFQINSLQTPRLYDLAIKQADLGSDDVV 305
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
D G GTIGL++A V V GIE+ A+ DA NAE+NGI+N ++ KAE++M
Sbjct: 306 IDAYSGIGTIGLSVAKHVKAVRGIEVVRDAIKDAKDNAELNGIENAKYYLGKAEEIM 362
>gi|256850547|ref|ZP_05555973.1| RNA methyltransferase [Lactobacillus crispatus MV-1A-US]
gi|256712570|gb|EEU27565.1| RNA methyltransferase [Lactobacillus crispatus MV-1A-US]
Length = 451
Score = 116 bits (290), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 96/357 (26%), Positives = 155/357 (43%), Gaps = 77/357 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
LAH+ Y QLE K+N + +LKK + + G +LP
Sbjct: 84 LAHIKYDKQLEFKRNQVVNLLKKAHLDEIEV---GQTLP--------------------- 119
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
SP GYRNK + V + +GF + + V P + + +
Sbjct: 120 SPEQTGYRNKAQVPVR-EYNGQLEIGFFRRHSHDLVPLTNFFTTDPEIDRVLVA----VR 174
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
+ L++ + ++ N+G R L VR ++ G+ + V+L+++V
Sbjct: 175 DVLRKYKIAPYDEVNNTGIIRYLDVRRSKANGEIM----------------VILVSRVK- 217
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLP-LTALVIQDHQGVSNVAPADAPLRLLSIP 545
+F ++ G A +P ++ LV+ + +NV +
Sbjct: 218 ----------DFPQMM-----GVAAEISQIPKVSGLVLNYNPKKTNVILGKKDYLVFG-- 260
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
ND +I D I +L+F ISP +FFQ+N+L +LY L ADLG D ++
Sbjct: 261 ---------ND----QITDQIGDLKFRISPQSFFQINSLQTPRLYDLAIKQADLGSDDVV 307
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
D G GTIGL++A V V GIE+ A+ DA NAE+NGI+N ++ KAE++M
Sbjct: 308 IDAYSGIGTIGLSVAKHVKAVRGIEVVRDAIKDAKDNAELNGIENAKYYLGKAEEIM 364
>gi|242018109|ref|XP_002429523.1| HpaII tiny fragments locus 9c protein, putative [Pediculus humanus
corporis]
gi|212514471|gb|EEB16785.1| HpaII tiny fragments locus 9c protein, putative [Pediculus humanus
corporis]
Length = 1002
Score = 116 bits (290), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 141/310 (45%), Gaps = 43/310 (13%)
Query: 360 KLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAV---EEPVDCPNVSE 416
K+E + SP++ GYRNKC+F VG +++ K TVGF L + + V ++ + P+ +
Sbjct: 419 KIEPLKTSPILQGYRNKCKFRVGKNIEGKTTVGFCLNDNENKILGVRPGDKLIHLPDSMK 478
Query: 417 IACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNIS 476
A K F++F++ S + + + SGFW +T+R +P L
Sbjct: 479 YAAKK---FEDFIRTSGKEPFVKKQKSGFWDHITIR--TTPEGSL--------------- 518
Query: 477 EVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPAD 536
ML+ + D + ++ + F G L + D V P
Sbjct: 519 --MLVVVMYHNNLSDESIIEIKNQVREYFVNGEGRDCKLHSLYFHTMYDKYPV----PPR 572
Query: 537 APLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDW 596
L LL E ++I L+F + P + VN+ ++E +Y+ +
Sbjct: 573 EKLELLH--------------GETHFLENICGLKFYVGPFSILNVNSSSSENIYNSIIEL 618
Query: 597 ADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCA 656
AD P+T++ D+C GTG I T+A+R VI IE ++ ++ A + E+N I+N F+
Sbjct: 619 ADPTPETIILDLCSGTGGIAFTIANRCKNVIAIESHSDHINYALKTKELNNIQNVEFIKG 678
Query: 657 KAEDVMGSLL 666
K ED +G +
Sbjct: 679 KVEDELGKVF 688
>gi|357051090|ref|ZP_09112286.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus
saccharolyticus 30_1]
gi|355380715|gb|EHG27851.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus
saccharolyticus 30_1]
Length = 457
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 101/373 (27%), Positives = 153/373 (41%), Gaps = 75/373 (20%)
Query: 301 RDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCK 360
R + PL+H+ Y QL K+ + +L K+ + P LP M+
Sbjct: 81 RTGIAPLSHLKYEKQLAFKQQQVENVLAKVAK-----MPQVEVLPTIGMEQ--------- 126
Query: 361 LEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
P GYRNK + V ++ + T GF N V + + P + +
Sbjct: 127 -------PF--GYRNKAQIPVQ-KIKGQLTTGFYRKNSHTLVPIEDFYIQDPAIDQAIVT 176
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
+I Q F ++ +N + GF R + +R G G E+M+
Sbjct: 177 VRNILQRF----NVKAYNEEAHEGFLRHVVIRRGHHSG------------------EMMV 214
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSNVAPADAPL 539
I A F E +A+ LP VIQ+ ++ +NV D
Sbjct: 215 ILVTRKAKFFKG------EEIAEVI-------HEELPEVVSVIQNINEEKTNVIMGDVEK 261
Query: 540 RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
L +A I D + + F IS +F+QVNT E LY + ADL
Sbjct: 262 VLYG---------------KASIDDQLFDKTFQISAKSFYQVNTAQTEVLYQKAFELADL 306
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659
PD ++ D G GTIG++LA RV V+G+E+ A AV DA NA NG++N + KAE
Sbjct: 307 QPDDIVVDAYAGIGTIGISLADRVQEVLGMEVVAEAVEDAKANAARNGLENVHYFVGKAE 366
Query: 660 DVMGSLLKDYLNP 672
+M L++ + P
Sbjct: 367 KIMPQWLREGIQP 379
>gi|359414932|ref|ZP_09207397.1| RNA methyltransferase, TrmA family [Clostridium sp. DL-VIII]
gi|357173816|gb|EHJ01991.1| RNA methyltransferase, TrmA family [Clostridium sp. DL-VIII]
Length = 452
Score = 115 bits (289), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 142/301 (47%), Gaps = 47/301 (15%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACKY 421
GI GSP YRNK EF+ G + +P ++G + G+ V+E C V E K
Sbjct: 114 GIQGSPNQWEYRNKMEFTFGDEAKGEPLSLGMHMRGKSFGILTVDE---CKLVDEDYRKI 170
Query: 422 ASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLI 481
+ ++ ++ DLP + K G+ R L +R+ ++ G+ +L+
Sbjct: 171 IKLTVDYFRKMDLPYYKVMKAEGYLRHLVIRKAQNTGE-------------------ILV 211
Query: 482 AQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRL 541
V++ D + E+ +L + S L +++ ++ S+ A P ++
Sbjct: 212 NLVTTTQIDFDL--GEYVKLLRE-------QSYKGNLVSIIHTENDSRSD---AVIPEKV 259
Query: 542 LSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGP 601
+ + D I +S+ L+F ISP +FFQ NT AE+LYS+ D+
Sbjct: 260 IVLFGKD------------YIRESLLGLQFNISPFSFFQTNTKGAEELYSIVKDFLGESE 307
Query: 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661
D ++FD+ CGTGTIG +A VIGIE+ AV A NA++NG+ NC F+ ++
Sbjct: 308 DKVVFDLYCGTGTIGQIVAPNAKKVIGIELIKEAVEAAKENAKLNGLDNCEFIAGDVAEI 367
Query: 662 M 662
+
Sbjct: 368 I 368
>gi|315037788|ref|YP_004031356.1| RNA methyltransferase [Lactobacillus amylovorus GRL 1112]
gi|325956263|ref|YP_004286873.1| RNA methyltransferase [Lactobacillus acidophilus 30SC]
gi|312275921|gb|ADQ58561.1| RNA methyltransferase [Lactobacillus amylovorus GRL 1112]
gi|325332828|gb|ADZ06736.1| RNA methyltransferase [Lactobacillus acidophilus 30SC]
Length = 448
Score = 115 bits (288), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 106/406 (26%), Positives = 170/406 (41%), Gaps = 81/406 (19%)
Query: 262 SAVPGELAEAHASSNGHEDGNGNDEGLAGDG-SGLKVKSARDVVT---PLAHMSYSVQLE 317
+A+PGE+ A E + + +K+K + V T LAH+ Y QLE
Sbjct: 33 NALPGEIVSAKILKVKKNFAFAKIEKIKKESPDRVKIKLNQWVQTGLASLAHIKYDKQLE 92
Query: 318 HKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKC 377
K+N + +LKK + + G +LP SP GYRNK
Sbjct: 93 FKRNQVVNLLKKAHLDDIEV---GQTLP---------------------SPEQTGYRNKA 128
Query: 378 EFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVW 437
+ V + + +GF + + V P + + I +++ +P +
Sbjct: 129 QVPVR-EINGQLEIGFFRRHSHDLVPLTNFFTTDPEIDRVLVAVRDILRKY----RVPAY 183
Query: 438 NRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSE 497
+ + G R L VR ++ G E+M+I ++++
Sbjct: 184 DEINHKGEVRYLDVRRSKATG------------------EIMVIL---------VCLHND 216
Query: 498 FERLAKAFAAGATASSPSLP-LTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESND 556
F RL G A +P +T L++ + +NV +L ND
Sbjct: 217 FPRLL-----GVAAEVSQIPGVTGLILNHNPKKTNVILGKKDYLVLG-----------ND 260
Query: 557 VVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIG 616
+I D I +L+F ISP +FFQ+N+L +LY L ADL P ++ D G GTIG
Sbjct: 261 ----QITDQIGDLKFRISPQSFFQINSLQTPRLYDLAIKKADLKPSDVVIDAYSGIGTIG 316
Query: 617 LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
L++A V V GIE+ A+ DA NA++N I N ++ KAE++M
Sbjct: 317 LSVAKHVKAVRGIEVVRDAIKDAKDNAKLNDIDNAKYYLGKAEEIM 362
>gi|355726271|gb|AES08817.1| TRM2 tRNA methyltransferase 2-like protein A [Mustela putorius
furo]
Length = 322
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 72/105 (68%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
IH+ + L F ISP AFFQVNTLAAE LY++ DWA L ++ + D+CCGTGTIGL LA
Sbjct: 96 IHEDLLGLTFRISPHAFFQVNTLAAEVLYTVIRDWAQLDTESTVLDICCGTGTIGLALAP 155
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
RV V+GIE+ AV DA NA N + N F C +AED++ +L+
Sbjct: 156 RVKRVVGIELCQEAVEDARVNARDNELSNVEFHCGRAEDLVPTLV 200
>gi|220931148|ref|YP_002508056.1| RNA methyltransferase [Halothermothrix orenii H 168]
gi|219992458|gb|ACL69061.1| RNA methyltransferase, TrmA family [Halothermothrix orenii H 168]
Length = 453
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 98/362 (27%), Positives = 152/362 (41%), Gaps = 76/362 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLP-CKLEGIL 365
L M YS+QL HK+ + L++ IGG ++ ++
Sbjct: 83 LQQMDYSLQLLHKQKIVKDTLER------------------------IGGFEEVRVNEVI 118
Query: 366 GSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF 425
G+ YRNK +F +G + + GF + V + + P ++ IA K SI
Sbjct: 119 GADHPWIYRNKAQFPLGSDNEGRVITGFYQKGTHQVVPHRQCVIQHPLINRIARKTISIL 178
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
+ DL V++ ++G R L VR G + ++ +LI
Sbjct: 179 NNY----DLTVYDEKTHTGLLRHLVVRVG------------------ICTNQALLIFVTR 216
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLLSI 544
F E + +A+ +P V+Q+ + +NV D L +
Sbjct: 217 DKKF------KELQEIARKLMT-------EIPELKGVLQNINPRRTNVIMGDKTLLI--- 260
Query: 545 PKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTL 604
+ ND D I ++R+ ISP +FFQVNTL E+LY+ +A L
Sbjct: 261 --------KGNDYY----IDYIGSIRYAISPHSFFQVNTLQTERLYNTVRKYAGLSGQET 308
Query: 605 LFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664
+ D CG G+IG+ LA V GIE+ SA+ DA RNA +NGI NC F+ K ED +
Sbjct: 309 VVDAYCGAGSIGIYLAGEARTVYGIEVVGSAIEDAERNAALNGINNCIFIKGKVEDKLPE 368
Query: 665 LL 666
L+
Sbjct: 369 LV 370
>gi|302875488|ref|YP_003844121.1| RNA methyltransferase, TrmA family [Clostridium cellulovorans 743B]
gi|307687940|ref|ZP_07630386.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
cellulovorans 743B]
gi|302578345|gb|ADL52357.1| RNA methyltransferase, TrmA family [Clostridium cellulovorans 743B]
Length = 455
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 98/363 (26%), Positives = 163/363 (44%), Gaps = 81/363 (22%)
Query: 309 HMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSP 368
++ Y QLE KKN + ++ +K + I G + EGI GSP
Sbjct: 86 YLDYEKQLEFKKNQVLKLFEK----------------------KNITGF--EFEGIEGSP 121
Query: 369 LVNGYRNKCEFSVG-YSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQE 427
+ YRNK EF+ G + T+G G+ V++ C V E Y +I +E
Sbjct: 122 EMFHYRNKMEFTFGDMEKGGEITLGLHARGMSFGILTVDQ---CYLVEE---DYRTILKE 175
Query: 428 ---FLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQV 484
++++ P + GF R L +R+G+ N E+M I V
Sbjct: 176 TLEYVKEKGFPKYRVMSREGFMRNLIIRQGK------------------NTRELM-INVV 216
Query: 485 SSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSI 544
+++ ++ + + ERL K LPL + +G+ L ++
Sbjct: 217 TTSQLNEDFIELK-ERLLK------------LPLENKI----KGI---------LHTIND 250
Query: 545 PKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPD 602
+D + V+ + I +++ L F ISP +FFQ N+ AEKLYS+ ++ D
Sbjct: 251 SFSDAVKIDELKVLYGQDYITENLLGLNFKISPLSFFQTNSKGAEKLYSIVKEYIGESDD 310
Query: 603 TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
++FD+ CGTGTIG +A + VIG+E+ AV A NAE+NG+ NC+F+ + +
Sbjct: 311 KVVFDLYCGTGTIGQIVAPKAKKVIGLELIEEAVKAAEINAELNGLTNCKFIAGDVAETI 370
Query: 663 GSL 665
++
Sbjct: 371 KTI 373
>gi|242018101|ref|XP_002429519.1| HpaII tiny fragments locus 9c protein, putative [Pediculus humanus
corporis]
gi|212514467|gb|EEB16781.1| HpaII tiny fragments locus 9c protein, putative [Pediculus humanus
corporis]
Length = 475
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 103/394 (26%), Positives = 162/394 (41%), Gaps = 72/394 (18%)
Query: 306 PLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIG-GLPCKLEGI 364
PL + Y Q++ K + + + KL PN L WI + +E G CK++ +
Sbjct: 29 PLWKIPYEEQIKQKTQTARKYIAKLCNLILTRNPN---LDGWIQRQKEENKGFLCKVDPM 85
Query: 365 LGSPLVNGYRNKCEFSVGY-SLQAKPTVGFMLGNFREGVTAV---EEPVDCPNVSEIACK 420
+ + NGY+ KCEF VG+ + + VGF + GV +V + + P+ ++ K
Sbjct: 86 VRTCNPNGYKAKCEFRVGFDEVSNERVVGFKCA--KSGVLSVCPGDRMIQLPHQMKLVVK 143
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
+F+++++QS LP + SGFW L VR + EVML
Sbjct: 144 ---LFEDYIKQSPLPPYVVETKSGFWHHLIVRVSMA-------------------GEVML 181
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
+ ++S + L+ F G V+NV
Sbjct: 182 LIDMNSKNLTLQQLQYVKSDLSNFFFNGDGR-----------------VANVQ------S 218
Query: 541 LLSIPKADGEPEESNDVVEA-----RIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGD 595
L P +G+ ++ +E R+ + + F I P F N +A+ Y D
Sbjct: 219 LYYHPHIEGQTDQVPSALELLGGMQRLIEPVMGTNFHIGPFTHFLTNACSAQTFYQAISD 278
Query: 596 WADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVC 655
GP+ + D+C G G IGLTLA + V IEM ++D A++N I N F+
Sbjct: 279 LVQPGPNVTIIDICAGIGAIGLTLAKKCKEVYAIEMLEQHIADGVLTAQMNNITNFSFLH 338
Query: 656 AKAEDVMGSLLKDYLNPLREEDEHASEGSNKEIT 689
AE+ +G LLK EG NKEI
Sbjct: 339 GIAEEQLGDLLK------------TLEGRNKEIV 360
>gi|150391401|ref|YP_001321450.1| RNA methyltransferase [Alkaliphilus metalliredigens QYMF]
gi|149951263|gb|ABR49791.1| RNA methyltransferase, TrmA family [Alkaliphilus metalliredigens
QYMF]
Length = 451
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 131/292 (44%), Gaps = 47/292 (16%)
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACKYA 422
I GSP GYRNK EFS G + P T+G + V++ C + E
Sbjct: 116 IEGSPEAFGYRNKMEFSFGDEEKGGPLTLGMHKRGKHHDIVTVDQ---CLIMDEDFRSIL 172
Query: 423 SIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIA 482
++ EF +Q ++P ++ ++ G+ R L VR+ K + + + S++NI L+
Sbjct: 173 TVILEFFKQREIPHYSSTRHEGYLRHLVVRKAHYT-KEILINLVTTTQSDINIEG--LVE 229
Query: 483 QVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLL 542
++ + + +V S F S L+ QD+
Sbjct: 230 EIKALSLKGKLVGS-----LHTFNDNLADMVQSDRTDVLIGQDY---------------- 268
Query: 543 SIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPD 602
+ + LRF IS +FFQ N+L AEKLYS+ D+ D
Sbjct: 269 -------------------FSEELLGLRFKISAFSFFQTNSLGAEKLYSIVRDFVGQADD 309
Query: 603 TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
++FD+ CGTGTIG +A + VIGIE+ AV+ A+ NA++NG+ NC F+
Sbjct: 310 QVVFDLYCGTGTIGQIVAQKAKKVIGIEIVEDAVTAANENAKLNGLTNCHFI 361
>gi|193699922|ref|XP_001950974.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A-like
[Acyrthosiphon pisum]
Length = 645
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 100/367 (27%), Positives = 167/367 (45%), Gaps = 55/367 (14%)
Query: 306 PLAHMSYSVQLEHKKNSIAQMLKKL-TRNARKACPNGVSLPEWI-MKSREIGG-LPCKLE 362
P + Y QL K + ++ T RK P L EW M+ R++ L +L
Sbjct: 131 PYHSIEYEEQLRKKSEEARILFQRFGTIIQRKQPP----LAEWCAMRKRQLNSDLAFELS 186
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKPT-VGFMLGNFREGVTAVEEPVDCPNVSEIACKY 421
I+ S V+ YRNKCE+SVG + + VG + + +G+ V P N+
Sbjct: 187 PIIPSQKVDRYRNKCEWSVGINPDSDSVAVGLRVKDSMDGIHYVGPPDCLRNLPMPMITL 246
Query: 422 ASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLI 481
A F++F++ N ++ WR + +R E+ EV +S V ++
Sbjct: 247 AKKFEDFVK-------NHSQDWRIWRNMIIRMN---------EDGEVMVSIVINQHLLDT 290
Query: 482 AQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDH--QGVSNVAPADAPL 539
Q+S+ K + + ++ + + +L Q H + +++
Sbjct: 291 EQLSNI---------------KCSISEWSKNNITENVVSLYFQVHGEKTLADCIGTTIEA 335
Query: 540 RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
LL K I + + NL ISP +F++N+L AE+L + D AD+
Sbjct: 336 ELLWGQKY--------------IVEKLLNLSLEISPATYFRLNSLGAEELCKVVADLADV 381
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659
+T + D+ CG+G + LTLA + V+GIE+ + + DA RNAEINGI NC F+ + E
Sbjct: 382 NENTTVLDLFCGSGCLALTLAKKCKQVVGIELIKANIMDAKRNAEINGIVNCEFIAGRTE 441
Query: 660 DVMGSLL 666
D++ S+L
Sbjct: 442 DILDSVL 448
>gi|390630876|ref|ZP_10258850.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Weissella confusa LBAE
C39-2]
gi|390483931|emb|CCF31198.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Weissella confusa LBAE
C39-2]
Length = 455
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 100/366 (27%), Positives = 152/366 (41%), Gaps = 89/366 (24%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ PLAH+ Y QL K+N I ++ KK + + G+ P
Sbjct: 85 IAPLAHLKYDAQLRFKQNQIQELFKKQHVDVEVSETLGMENP------------------ 126
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREG---VTAVEE-PVDCPNVSEIAC 419
GYRNK + L+ + T GF FR G + +E+ + P +
Sbjct: 127 -------TGYRNKAQIPT-RELRGELTTGF----FRRGSHNLMPIEDFYIQDPEID---- 170
Query: 420 KYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVM 479
K + ++ L++ +P +N F+++G R + VR G E+M
Sbjct: 171 KAIVVIRDILRKYHIPAYNEFEHTGVIRNIMVRRGYYS------------------HEMM 212
Query: 480 LIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSNVAPADAP 538
++ S A + E R A LP +IQ+ +Q +NV
Sbjct: 213 VVLVTRSKKLPGAEMIVEEIREA-------------LPEVKSIIQNVNQEKTNVILG--- 256
Query: 539 LRLLSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDW 596
E N+ + + I D++ +F I P +F+QVN E LY L D
Sbjct: 257 --------------EKNNTLWGKNVITDTLFGKKFAIGPNSFYQVNPQTTETLYQLAADK 302
Query: 597 ADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCA 656
A L D + D G GTI LT+A RV V+G+E+ AV DA RNA+ING+ N +F
Sbjct: 303 AGLNGDEEVIDAYSGIGTISLTIADRVKSVLGVEIVPGAVDDAKRNADINGVTNAKFELG 362
Query: 657 KAEDVM 662
KAE+ M
Sbjct: 363 KAEEKM 368
>gi|295426510|ref|ZP_06819160.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus amylolyticus
DSM 11664]
gi|295063878|gb|EFG54836.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus amylolyticus
DSM 11664]
Length = 450
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 99/359 (27%), Positives = 153/359 (42%), Gaps = 81/359 (22%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
LAH+ Y QLE K+N + +LKK A +GV + E L
Sbjct: 82 LAHIKYDKQLEFKRNQVVNLLKK-------AHLDGVKVNE-----------------TLP 117
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
SP GYRNK + V + + +GF + + V P + + I +
Sbjct: 118 SPEQTGYRNKAQVPVR-EVNGQLEIGFFRRHSHDLVPLTNFFTTDPEIDRVLVATRDILR 176
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
++ ++P ++ + G R L VR ++ GK + V+L+
Sbjct: 177 KY----EVPAYDEIHHKGEVRYLDVRRSKANGKLM----------------VILVC---- 212
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
++ +F +L K A +P + VI ++ PK
Sbjct: 213 -------LHKDFPQLPKV-----AAEISQIPEISSVILNYN-----------------PK 243
Query: 547 ADGEPEESNDVV---EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDT 603
ND V E + D I ++ F ISP +FFQ+N+L +LY L ADL +
Sbjct: 244 KTNVILGRNDYVVLGEDHLIDKIGDVEFRISPKSFFQINSLQTPRLYDLAIKKADLKAND 303
Query: 604 LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
++ D G GTIGL++A V V G+E AV DA+ NA++NGI+N ++V KAEDVM
Sbjct: 304 VVVDAYSGIGTIGLSVAKHVKAVRGMETIREAVEDANANAKLNGIENAQYVTGKAEDVM 362
>gi|160894134|ref|ZP_02074912.1| hypothetical protein CLOL250_01688 [Clostridium sp. L2-50]
gi|156864167|gb|EDO57598.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. L2-50]
Length = 463
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 102/358 (28%), Positives = 152/358 (42%), Gaps = 68/358 (18%)
Query: 310 MSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPL 369
MSY QLE K + ++L +GV ++ P EGI+GSP+
Sbjct: 86 MSYEHQLELKAGQVKKLL------------DGVI---------DLEAHPYDWEGIIGSPV 124
Query: 370 VNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPV-DCPNVSEIACKYASIFQEF 428
YRNK E+S G + P V LG ++ PV +C VSE + S EF
Sbjct: 125 TTAYRNKMEYSFGDEYKDGPLV---LGLHKKNSMYDIVPVCNCVIVSEDYNRIVSYTMEF 181
Query: 429 LQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSAT 488
+ L + ++ G R L +R+ ++ G L V+ T
Sbjct: 182 ARAHGLSYHKKMQHVGLLRHLVLRQSKTNGGLL----------------------VNLVT 219
Query: 489 FDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLLSIPKA 547
D + N + A+ G A LPL +I H ++A A P ++ +
Sbjct: 220 STDGLENLDL----NAYVEGLLA----LPLDGTIIGILHTANDSLADAVVPEKVTLLYGR 271
Query: 548 DGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFD 607
D I + + L F ISP +FFQ NT +AE+LYS ++A D L+FD
Sbjct: 272 D------------YIEEEVLGLHFQISPFSFFQTNTKSAERLYSKAREYAGDTKDKLIFD 319
Query: 608 VCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
+ GTGTI L+ VIG+E+ AV A NA+ NG+ NC F+ V+ ++
Sbjct: 320 LYSGTGTIAQMLSPVASKVIGVEIVEEAVEAARENAKSNGLDNCEFIAGDVLKVIDTI 377
>gi|297617338|ref|YP_003702497.1| TrmA family RNA methyltransferase [Syntrophothermus lipocalidus DSM
12680]
gi|297145175|gb|ADI01932.1| RNA methyltransferase, TrmA family [Syntrophothermus lipocalidus
DSM 12680]
Length = 458
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 108/373 (28%), Positives = 150/373 (40%), Gaps = 89/373 (23%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H+ YS QLE K+ + Q LK+ IG L C++ + G
Sbjct: 89 LQHIDYSRQLELKREVVVQALKR------------------------IGHLECEVLPVRG 124
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
YRNK +F G K G F+ G DC S +
Sbjct: 125 MDNPWHYRNKGQFHAG-----KNDGRVFFGFFKPGSYQAVPARDCLLFSPAVNNLLGYLE 179
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
+ L +S + V++ G R L +RE + G+ + V
Sbjct: 180 QSLTESGVEVYHPQTGDGRLRNLVIRESSATGEMMAV----------------------F 217
Query: 487 ATFDDAVVNSEF-ERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL------ 539
T + +NS F + L +AF P V Q N+ P +PL
Sbjct: 218 VTTHEKSLNSHFLQGLGEAF-----------PQLTSVYQ------NINPGRSPLALGPKF 260
Query: 540 RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
RLLS G+PE I D I +L F ISP +FFQVN + E LY + ++A+L
Sbjct: 261 RLLS-----GKPE---------ITDKIEHLSFEISPGSFFQVNRVQTELLYRIVSEFAEL 306
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659
+ D G GTI L LA R VI +E N AV+DA +NA NGIKN RF+ + E
Sbjct: 307 NGTETVLDAYSGVGTIALFLAERAKKVIAVEENEKAVADAQKNARGNGIKNVRFIAQRVE 366
Query: 660 DVMGSLLKDYLNP 672
D + + D+ P
Sbjct: 367 DWVTNAALDHERP 379
>gi|385817141|ref|YP_005853531.1| RNA methyltransferase [Lactobacillus amylovorus GRL1118]
gi|327183079|gb|AEA31526.1| RNA methyltransferase [Lactobacillus amylovorus GRL1118]
Length = 448
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 105/406 (25%), Positives = 170/406 (41%), Gaps = 81/406 (19%)
Query: 262 SAVPGELAEAHASSNGHEDGNGNDEGLAGDG-SGLKVKSARDVVT---PLAHMSYSVQLE 317
+A+PGE+ A E + + +K+K + V T LAH+ Y QLE
Sbjct: 33 NALPGEIVSAKILKVKKNFAFAKIEKIKKESPDRVKIKLNQWVQTGLASLAHIKYDKQLE 92
Query: 318 HKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKC 377
K+N + +LKK + + G +LP SP GYRNK
Sbjct: 93 FKRNQVVNLLKKAHLDDIEV---GQTLP---------------------SPEQTGYRNKA 128
Query: 378 EFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVW 437
+ V + + +GF + + V P + + I +++ +P +
Sbjct: 129 QVPVR-EINGQLEIGFFRRHSHDLVPLTNFFTTDPEIDRVLVAVRDILRKY----RVPAY 183
Query: 438 NRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSE 497
+ + G R L VR ++ G E+M+I ++++
Sbjct: 184 DEINHKGEVRYLDVRRSKATG------------------EIMVIL---------VCLHND 216
Query: 498 FERLAKAFAAGATASSPSLP-LTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESND 556
F +L G A +P +T L++ + +NV +L ND
Sbjct: 217 FPQLL-----GVAAEVSQIPGVTGLILNHNPKKTNVILGKKDYLVLG-----------ND 260
Query: 557 VVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIG 616
+I D I +L+F ISP +FFQ+N+L +LY L ADL P ++ D G GTIG
Sbjct: 261 ----QITDQIGDLKFRISPQSFFQINSLQTPRLYDLAIKKADLKPSDVVIDAYSGIGTIG 316
Query: 617 LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
L++A V V GIE+ A+ DA NA++N I N ++ KAE++M
Sbjct: 317 LSVAKHVKAVRGIEVVRDAIKDAKDNAKLNDIDNAKYYLGKAEEIM 362
>gi|150015413|ref|YP_001307667.1| RNA methyltransferase [Clostridium beijerinckii NCIMB 8052]
gi|149901878|gb|ABR32711.1| RNA methyltransferase, TrmA family [Clostridium beijerinckii NCIMB
8052]
Length = 452
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/305 (27%), Positives = 143/305 (46%), Gaps = 49/305 (16%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACKY 421
GI GSP YRNK EF+ G + +P ++G + G+ V+E C V E K
Sbjct: 114 GIQGSPNQWEYRNKMEFTFGDEAKGEPLSLGMHMRGKSFGILTVDE---CKLVDEDYRKI 170
Query: 422 ASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLI 481
+ ++ ++ DLP + K G+ R L +R+ ++ G+ +L+
Sbjct: 171 IRLTADYFREKDLPYYRIMKAEGYLRHLVIRKAQNTGE-------------------ILV 211
Query: 482 AQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRL 541
V++ D + E+ +L + + S +I N + +DA +
Sbjct: 212 NLVTTTQIDFDL--GEYVKLLRDQSYKGNLVS--------IIH----TENNSKSDAVI-- 255
Query: 542 LSIPKADGEPEESNDVV-EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
PE+ N + + I +++ L+F ISP +FFQ NT AE LYS+ ++
Sbjct: 256 ---------PEKVNVLFGKDYIRETLLELQFNISPFSFFQTNTKGAESLYSIVKEFMGDS 306
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
+ ++FD+ CGTGTIG +A VIGIE+ AV A NA++NG+ NC F+ +
Sbjct: 307 EEKIVFDLYCGTGTIGQIVAPNAKKVIGIELIEEAVEAARENAKLNGLNNCEFIAGDVAE 366
Query: 661 VMGSL 665
++ ++
Sbjct: 367 IIKTV 371
>gi|153815457|ref|ZP_01968125.1| hypothetical protein RUMTOR_01692 [Ruminococcus torques ATCC 27756]
gi|145847099|gb|EDK24017.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus torques
ATCC 27756]
Length = 500
Score = 113 bits (282), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 98/419 (23%), Positives = 173/419 (41%), Gaps = 107/419 (25%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL----- 361
+ MSY QLE K+ + L++ IGG P +L
Sbjct: 103 IQEMSYEKQLEFKERKVRGNLER------------------------IGGFPSELLERTK 138
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKY 421
E I+G YRNK +F G + P GF G + + +C + +
Sbjct: 139 EPIIGMETPFYYRNKAQFPFGTDKEGNPVTGFYAGRTHDIIANT----NCILGAAVNEHI 194
Query: 422 ASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLI 481
+F+++ + ++ +G +R + +R G + E+M+
Sbjct: 195 LESILDFMKKYKIRSYDEKTGTGLFRHVLLRYGFTT------------------KEIMVC 236
Query: 482 AQVSSATFDDAVVNSEF--------ERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVA 533
V+ D A + E+ E LAK + +SP+ T +++ D
Sbjct: 237 FVVNK---DKADKSGEWFPHQKELVEELAKIDGMTSITASPNTKRTNVIMGD-------- 285
Query: 534 PADAPLRLLSIPKADGEPEESNDVV--EARIHDSISNLRFCISPTAFFQVNTLAAEKLYS 591
+ +V+ + I D I ++++ ISP +F+QVN + EKLYS
Sbjct: 286 --------------------TFEVLWGQGYITDYIGSVKYQISPLSFYQVNPVQTEKLYS 325
Query: 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNC 651
++A L D ++D+ CG GTI L LA + V G+E+ A+ DA NA++NGI+N
Sbjct: 326 QALEYAGLKGDETVWDLYCGIGTISLFLAQKAKQVYGVEIVPPAIDDARENAQLNGIENA 385
Query: 652 RFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGCSGQ 710
+F K+E+++ KDY E++H E ++ ++ + + P +GC +
Sbjct: 386 QFFVGKSEEILPKYYKDY------EEQHGGEKAHADVIVVD---------PPRKGCDAK 429
>gi|332638824|ref|ZP_08417687.1| tRNA (uracil-5-)-methyltransferase related enzyme [Weissella
cibaria KACC 11862]
Length = 455
Score = 112 bits (281), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 100/366 (27%), Positives = 156/366 (42%), Gaps = 89/366 (24%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ PLAH++Y QL K+N I ++ KK + + G+ P
Sbjct: 85 IAPLAHLNYDAQLRFKQNQIQELFKKQHVDVEVSETLGMENP------------------ 126
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREG---VTAVEE-PVDCPNVSEIAC 419
GYRNK + L+ + T GF FR G + +E+ + P +
Sbjct: 127 -------TGYRNKAQIPT-RELRGELTTGF----FRRGSHNLMPIEDFYIQDPEID---- 170
Query: 420 KYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVM 479
K + ++ L++ +P +N F+++G R + VR G + + V L +V +E M
Sbjct: 171 KAIVVIRDILRKYHIPAYNEFEHTGVIRNIMVRRGYYSHEMMVV--LVTRSKKVPGAE-M 227
Query: 480 LIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSNVAPADAP 538
++A + A LP +IQ+ +Q +NV
Sbjct: 228 IVADIREA----------------------------LPEVKSIIQNVNQEKTNVILG--- 256
Query: 539 LRLLSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDW 596
E N+ + + I D++ +F I P +F+QVN E LY L D
Sbjct: 257 --------------EKNNTLWGKDVITDTLFGKKFVIGPNSFYQVNPQTTETLYQLAADK 302
Query: 597 ADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCA 656
A L D + D G GTI LT+A RV V+G+E+ AV DA RNA+ING+ N +F
Sbjct: 303 AGLTGDEEVIDAYSGIGTISLTIADRVKSVLGVEVVPGAVDDAKRNADINGVNNAKFELG 362
Query: 657 KAEDVM 662
KAE+ M
Sbjct: 363 KAEEKM 368
>gi|58336866|ref|YP_193451.1| RNA methyltransferase [Lactobacillus acidophilus NCFM]
gi|227903424|ref|ZP_04021229.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
acidophilus ATCC 4796]
gi|58254183|gb|AAV42420.1| RNA methyltransferase [Lactobacillus acidophilus NCFM]
gi|227868744|gb|EEJ76165.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
acidophilus ATCC 4796]
Length = 450
Score = 112 bits (281), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 95/356 (26%), Positives = 151/356 (42%), Gaps = 75/356 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
LAH+ Y QLE K+N + +LKK M + E+G +
Sbjct: 82 LAHIKYDKQLEFKRNQVVNLLKKAH-----------------MDNIEVGE-------TMA 117
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
SP GYRNK + V + + +GF + + V P + + I
Sbjct: 118 SPEQTGYRNKAQVPVR-EVNGQLEIGFFRRHSHDLVPLTNFFTTDPEIDRVLIAVRDI-- 174
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
L+++++P ++ + G R L VR ++ G E+M+I
Sbjct: 175 --LRKNNVPAYDEINHKGEVRYLDVRRSKATG------------------EIMVIL---- 210
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
++ +F +L + A + P + T L++ + +NV +
Sbjct: 211 -----ICLHKDFAQLPRI--AAEVSQIPGV--TGLILNHNPKKTNVILGKKDYLVFG--- 258
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
ND +I D I +L+F ISP +FFQ+N+L +LY L A L P ++
Sbjct: 259 --------ND----QITDKIGDLKFRISPQSFFQINSLQTPRLYDLAIKKAALKPSDVVI 306
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
D G GTIGL++A V V GIE+ A+ DA NAE+NGI N + KAE++M
Sbjct: 307 DAYSGIGTIGLSVAKHVKAVRGIEVVRDAIKDAKDNAELNGIDNAEYYLGKAEEIM 362
>gi|403515547|ref|YP_006656367.1| TrmA family RNA methyltransferase [Lactobacillus helveticus R0052]
gi|403080985|gb|AFR22563.1| TrmA family RNA methyltransferase [Lactobacillus helveticus R0052]
Length = 450
Score = 112 bits (281), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 105/407 (25%), Positives = 172/407 (42%), Gaps = 83/407 (20%)
Query: 262 SAVPGELAEAHASSNGHEDGNGNDEGLAGDG-SGLKVKSARDV---VTPLAHMSYSVQLE 317
+A+PGE+ A E + + +KVK + V + LAH+ Y QL+
Sbjct: 33 NALPGEVVSAKILKVKKNFAFAKIEKIKKESPDRVKVKLNQGVQSGLASLAHIKYDKQLD 92
Query: 318 HKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKC 377
K+N + +LKK +++ E+G L SP GYRNK
Sbjct: 93 FKRNQVVNLLKKAH-----------------LENIEVGE-------TLASPEEVGYRNKA 128
Query: 378 EFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVW 437
+ V + + +GF + + + P + + I +++ +P +
Sbjct: 129 QVPVR-EVNGQLEIGFFRRHSHDLMPLTHFFTTDPEIDRVLVAVRDILRKY----KVPAY 183
Query: 438 NRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSE 497
+ N G R L VR +S G E+M+I ++ +
Sbjct: 184 DEINNKGEVRYLEVRRSKSTG------------------EMMVIL---------VCLHKD 216
Query: 498 FERLAKAFAAGATASSPSLPLTALVIQDHQGVSNV--APADAPLRLLSIPKADGEPEESN 555
F +L A + P + + L++ + +NV P D + N
Sbjct: 217 FMQLPNV--AAEVSQIPGV--SGLILNHNPKKTNVILGPKDYLVF-------------GN 259
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
D +I D I +L+F ISP +FFQ+N+L +LY+L ADL PD ++ D G GTI
Sbjct: 260 D----QITDQIGDLKFRISPQSFFQINSLQTPRLYNLAIKQADLKPDDVVIDAYSGIGTI 315
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
GL++A V V GIE+ A+ DA NA++N I N ++ KAE++M
Sbjct: 316 GLSVAKHVKAVRGIEVVRDAIKDAKDNAKLNDITNAKYYLGKAEEIM 362
>gi|358337798|dbj|GAA28578.2| tRNA (uracil-5-)-methyltransferase homolog A [Clonorchis sinensis]
Length = 1305
Score = 112 bits (280), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 140/550 (25%), Positives = 213/550 (38%), Gaps = 105/550 (19%)
Query: 181 NLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240
LKK L + Y+ K +T F+ F +VE A+ L+G K+ + + +
Sbjct: 752 QLKKLLDSLNVKYRKVKLLPEVT--FITFCTVEDRDAAIAILDGYVWRGKSFEAKVAIGK 809
Query: 241 SFDKNIKSPMTLSGNAKQASESAVPGEL------AEAHASSNGHEDGNGN--DEGLAGD- 291
+ K T + A + GE A+ A+ G+ D +G E +A +
Sbjct: 810 ADPLLHKRHATADSSEAPAEKRTCVGEFLSSADQADRSAACGGYNDRSGTLLMEAMASNL 869
Query: 292 ------GSGLKVKSARDVVTPLAHMSYSV-QLEHKKNSIAQMLKKLTRNARKACPN--GV 342
+ RD+VTPL + Y+ QL K N + +L + ++ P+
Sbjct: 870 FAYGKVLRTRRKTRLRDIVTPLYRLPYNPDQLLEKSNHVISILALMRTRLIESNPSISDS 929
Query: 343 SLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAK-PTVGFMLGNFREG 401
L + + C L I+ SP+ YRNK E ++G L+ + P VGF L +R+G
Sbjct: 930 LLTLGLQRDSSDKLCVCPLLEIVPSPITAEYRNKSELTIGCDLEGQGPIVGFRLTKYRDG 989
Query: 402 VTAVEE-------PVDCPNVSEIACKYASIFQEFLQQSDLP---VWNRFKNSGFWRQLTV 451
+TAV P ++ + K+ F+ +S P ++ +SG WR L +
Sbjct: 990 LTAVGSFHHVDILPKSTVSILDEVQKFIDSFRNVQSESRCPPLTTYDPITHSGHWRHLLI 1049
Query: 452 REGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATA 511
RE R ++ + + Q+ DD ER F +
Sbjct: 1050 RESRL--------------GDLLLLLDIHPQQLKQEEMDDLC-----ERFRHWFVDDSAQ 1090
Query: 512 SSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRF 571
P +T+L + S L + +VE L F
Sbjct: 1091 GGPK--VTSLYFSTRRNTSEKFDTSNTRLLFG----------KDHIVE-----KCCGLEF 1133
Query: 572 CISPTAFFQVNTLAAEKLYSLGGDWA-----------------------------DLGPD 602
IS AFFQVNTLAAE LY +A D
Sbjct: 1134 RISLDAFFQVNTLAAELLYEEVSKFASGAYDSFSRTHSNTDYSQDDKDQPNISASDCHRS 1193
Query: 603 TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE--- 659
T L D+CCGTGTI L L+ IE+ SAV+DA +NA NGI+N F +A+
Sbjct: 1194 TCLLDICCGTGTIALCLSK-----ARIELVQSAVADAKQNATRNGIRNAHFYAGQADKVL 1248
Query: 660 -DVMGSLLKD 668
DVM ++ KD
Sbjct: 1249 FDVMSTIPKD 1258
Score = 43.9 bits (102), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 26/33 (78%)
Query: 750 NVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
N+VA+VDPPR G+ TVI+ LR RL+R++++
Sbjct: 1260 NIVAVVDPPRSGIRNTVIQTLRRCTRLERIVYV 1292
>gi|336431520|ref|ZP_08611369.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 2_1_58FAA]
gi|336013822|gb|EGN43694.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 2_1_58FAA]
Length = 462
Score = 112 bits (280), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 89/332 (26%), Positives = 136/332 (40%), Gaps = 55/332 (16%)
Query: 354 IGGLPCKLEGILGSPLVN-----GYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEP 408
IGG KL + P+V YRNK +F G GF G + +
Sbjct: 105 IGGFSPKLLEKIADPIVGMEIPFHYRNKAQFPFGKDKNGVTVTGFYAGRTHDIIANT--- 161
Query: 409 VDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEV 468
DC E + F++Q + ++ G R + +R G +
Sbjct: 162 -DCALGVEQNQEILETILSFMEQYQMEPYDEKTGKGLLRHVLIRYGFTT----------- 209
Query: 469 NISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQG 528
E+M+ +++ ERL + +T++ I +Q
Sbjct: 210 -------KEIMVCLVINAKKIPHC------ERLVELL-------QKIEGMTSITISVNQK 249
Query: 529 VSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEK 588
+NV D+ L +A I D I +++ ISP +FFQVN + EK
Sbjct: 250 NTNVIMGDSYEVLWG---------------QAFITDYIGEIKYQISPLSFFQVNPVQTEK 294
Query: 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI 648
LY L ++ DL D ++D+ CG GTI L LA + V G+E+ A+ DA +NA+INGI
Sbjct: 295 LYGLALEYVDLKGDETVWDLYCGIGTISLFLAQKAKQVYGVEIIPQAIEDARKNAQINGI 354
Query: 649 KNCRFVCAKAEDVMGSLLKDYLNPLREEDEHA 680
+N +F KAE+V+ DY E HA
Sbjct: 355 ENAKFYVGKAEEVLPGYYADYAKAHPGEQAHA 386
>gi|210621791|ref|ZP_03292820.1| hypothetical protein CLOHIR_00765 [Clostridium hiranonis DSM 13275]
gi|210154555|gb|EEA85561.1| hypothetical protein CLOHIR_00765 [Clostridium hiranonis DSM 13275]
Length = 456
Score = 112 bits (280), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 92/364 (25%), Positives = 158/364 (43%), Gaps = 77/364 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
+ + Y+ QLE K N + Q++ ++ + G ++ + I G+
Sbjct: 88 IQELDYNKQLELKTNEVKQVISRIGK------IEGATIHDTI-------GME-------- 126
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
+P YRNK +F V + +P +GF +++ V C E+ + + +
Sbjct: 127 TPF--RYRNKAQFPVQMR-KGEPVIGF----YKKKSHEVIPTAKCMIQHELNDEIIEVVR 179
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
EF+ ++++ V++ K+ G R + + G + G EVM++ +
Sbjct: 180 EFIVENNISVYDEVKHKGLLRHIVTKIGFTTG------------------EVMVVLVANG 221
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
+ +LAK LV+ + +NV
Sbjct: 222 KNIPNV------NKLAKMLEERIKG------FKTLVVNVNTNKTNVILG----------- 258
Query: 547 ADGEPEESNDVV--EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTL 604
N V+ +I+D I NL F ISP +FFQVN + E LY+ ++A+L +
Sbjct: 259 ------RENKVICGTGKINDYIGNLVFEISPLSFFQVNPVQTEVLYNKALEYANLTGNET 312
Query: 605 LFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664
+FD+ CG GTI L LA + V GIE+ A+ DA RNAE+NG++N F KAE+V+
Sbjct: 313 VFDIYCGIGTISLFLAQKAKKVYGIEIVEDAIKDAKRNAELNGLENTEFYAGKAEEVVPK 372
Query: 665 LLKD 668
+ K+
Sbjct: 373 MYKE 376
>gi|241688185|ref|XP_002412851.1| tRNA uracil-5-methyltransferase, putative [Ixodes scapularis]
gi|215506653|gb|EEC16147.1| tRNA uracil-5-methyltransferase, putative [Ixodes scapularis]
Length = 399
Score = 112 bits (280), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 102/357 (28%), Positives = 159/357 (44%), Gaps = 55/357 (15%)
Query: 319 KKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCE 378
K + +L+KL R A GV P + GLPC L ++ SP++ GYRNK E
Sbjct: 3 KYQDLTVVLQKLGRKLSAA---GVDFPA------DPKGLPCPLRPVVPSPVLEGYRNKDE 53
Query: 379 FSVGYSLQAKP-TVGFMLGN-FREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
FS+ +P VGF++G+ EG P I CK +S V
Sbjct: 54 FSIREGPSGEPKVVGFLVGSPTGEGKAVCVSPDHV-----IICK----------ESHKRV 98
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN-ISEVMLIAQVSSATFDDAVVN 495
N + R+G+ L L +++ +N +M + S+ T + ++
Sbjct: 99 ARVIGNRTQVQATECRQGK-----LQWHGLYLDLRVINSFFTLMPCPKYSAKTVTEQLI- 152
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQ--DHQGVSNVAPADAPLRLLSIPKADGEPEE 553
+E + L F G + +L Q H S+ AP LL P
Sbjct: 153 AEKQGLVDYFVHG---EGKDCNIASLYFQACPHTRCSH---EQAPFELLHGP-------- 198
Query: 554 SNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTG 613
+ + + +LRF +SP +FFQVN+ A +Y D + L D+CCGTG
Sbjct: 199 ------PHLQEEMGDLRFRLSPESFFQVNSAVAGFMYDAVRQMLDCNQHSTLLDICCGTG 252
Query: 614 TIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYL 670
TIGLT+A + V G++ ++ AV DA NA++NGI N RFV +AE ++ ++ ++
Sbjct: 253 TIGLTMARGIHSVFGMDASSQAVEDASYNAQLNGITNARFVAGRAEHLVPNMRNEFF 309
>gi|182419838|ref|ZP_02951078.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium butyricum
5521]
gi|237666723|ref|ZP_04526708.1| 23S rRNA-methyltransferase [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182376386|gb|EDT73968.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium butyricum
5521]
gi|237657922|gb|EEP55477.1| 23S rRNA-methyltransferase [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 451
Score = 112 bits (279), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 83/302 (27%), Positives = 142/302 (47%), Gaps = 49/302 (16%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKPT-VGFMLGNFREGVTAVEEPVDCPNVSEIACKY 421
GI GSP YRNK EF+ G + P VG + G+ V++ C + E K
Sbjct: 114 GIQGSPTQFEYRNKMEFTFGDEAKGAPLGVGMHMIGKSFGIVTVDQ---CMLIDEDYRKV 170
Query: 422 ASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLI 481
+ ++ ++ +LP + K G+ R L +R+ ++ G+ L NL V ++++ +
Sbjct: 171 IRLTVDYFREQNLPYYRIMKAEGYLRHLVIRKAKNTGELL--VNL-VTTTQIDFDLSDYV 227
Query: 482 AQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRL 541
+ + ++D +V+ +I N + +DA +
Sbjct: 228 KLLRNESYDGRLVS--------------------------IIH----TENDSKSDAVI-- 255
Query: 542 LSIPKADGEPEESNDVV-EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
PE+ N + + I + + L F ISP +FFQ NT AE+LYS+ D+
Sbjct: 256 ---------PEKVNVLYGKDYIREELLGLEFNISPFSFFQTNTKGAEQLYSMVRDFMGDS 306
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
+ ++FD+ CGTGTIG +A + VIGIE+ AV A NA++NG++NC F+ +
Sbjct: 307 ENKVVFDLYCGTGTIGQIVAPKAKKVIGIELIEEAVEAAKENAKLNGLENCEFLAGDVAE 366
Query: 661 VM 662
++
Sbjct: 367 II 368
>gi|158319641|ref|YP_001512148.1| RNA methyltransferase [Alkaliphilus oremlandii OhILAs]
gi|158139840|gb|ABW18152.1| RNA methyltransferase, TrmA family [Alkaliphilus oremlandii OhILAs]
Length = 452
Score = 112 bits (279), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 95/361 (26%), Positives = 150/361 (41%), Gaps = 74/361 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
+ HM Y QL K+N++ + LK+ IG + + LG
Sbjct: 83 IMHMDYEQQLRTKRNTVVEALKR------------------------IGKIDAVVHPTLG 118
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
YRNK +F VG L K +GF +++G + + C + I K + +
Sbjct: 119 MDNPYEYRNKAQFPVGI-LDGKSILGF----YKKGSHEIVDTEYCHIQAPINTKIVQVIK 173
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
+++ D+ V++ ++SG R + + G + G EVM+I +
Sbjct: 174 KYIDDFDVAVYDEKEHSGLIRHVVTKVGFATG------------------EVMVIMVTNG 215
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
F + + K G L ++V + +NV D L
Sbjct: 216 KEFP---YKDKLIEMLKENVEG---------LKSVVQNINMKNTNVIFGDTTFTLYG--- 260
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
E +I D I +L+F IS +F+QVN + LY ++ADL + +F
Sbjct: 261 ------------EDQIVDYIGDLKFNISARSFYQVNPAQTKVLYEKALEYADLTGNERVF 308
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
D+ CG GTI L LA + V GIE+ +A+ DA NA IN + N +F KAEDV+ L
Sbjct: 309 DIYCGIGTISLFLAKKAKEVHGIEIIDAAIEDARENARINHLTNTKFYVGKAEDVVPKLY 368
Query: 667 K 667
K
Sbjct: 369 K 369
>gi|161507077|ref|YP_001577031.1| RNA methyltransferase [Lactobacillus helveticus DPC 4571]
gi|260102784|ref|ZP_05753021.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
helveticus DSM 20075]
gi|160348066|gb|ABX26740.1| RNA methyltransferase [Lactobacillus helveticus DPC 4571]
gi|260083388|gb|EEW67508.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
helveticus DSM 20075]
Length = 450
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 95/358 (26%), Positives = 155/358 (43%), Gaps = 79/358 (22%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
LAH+ Y QL+ K+N + +LKK +++ E+G L
Sbjct: 82 LAHIKYDKQLDFKRNQVVNLLKKAH-----------------LENIEVGE-------TLA 117
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
SP GYRNK + V + + +GF + + + P + + I +
Sbjct: 118 SPEEVGYRNKAQVPVR-EVNGQLEIGFFRRHSHDLMPLTHFFTTDPEIDRVLVAVRDILR 176
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
++ +P ++ N+G R L VR +S G E+M+I
Sbjct: 177 KY----KVPAYDEINNNGEVRYLEVRRSKSTG------------------EMMVIL---- 210
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNV--APADAPLRLLSI 544
++ +F +L A + P + + L++ + +NV P D +
Sbjct: 211 -----VCLHKDFMQLPNV--AAEVSQIPGV--SGLILNHNPKKTNVILGPKDYLVF---- 257
Query: 545 PKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTL 604
ND +I D I +L+F ISP +FFQ+N+L +LY+L ADL PD +
Sbjct: 258 ---------GND----QITDQIGDLKFRISPQSFFQINSLQTPRLYNLAIKQADLKPDDV 304
Query: 605 LFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
+ D G GTIGL++A V V GIE+ A+ DA NA++N I N ++ KAE++M
Sbjct: 305 VIDAYSGIGTIGLSVAKHVKAVRGIEVVRDAIKDAKDNAKLNDITNAKYYLGKAEEIM 362
>gi|385814351|ref|YP_005850744.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lactobacillus
helveticus H10]
gi|323467070|gb|ADX70757.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lactobacillus
helveticus H10]
Length = 458
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 105/407 (25%), Positives = 173/407 (42%), Gaps = 83/407 (20%)
Query: 262 SAVPGELAEAHASSNGHEDGNGNDEGLAGDG-SGLKVKSARDV---VTPLAHMSYSVQLE 317
+A+PGE+ A E + + +KVK + V + LAH+ Y QL+
Sbjct: 35 NALPGEVVSAKILKVKKNFAFAKIEKIKKESPDRVKVKLNQGVQSGLASLAHIKYDKQLD 94
Query: 318 HKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKC 377
K+N + +LKK +++ E+G L SP GYRNK
Sbjct: 95 FKRNQVVNLLKKAH-----------------LENIEVGE-------TLASPEEVGYRNKA 130
Query: 378 EFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVW 437
+ V + + +GF + + + P + + I +++ +P +
Sbjct: 131 QVPVR-EVNGQLEIGFFRRHSHDLMPLTHFFTTDPEIDRVLVAVRDILRKY----KVPAY 185
Query: 438 NRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSE 497
+ N+G R L VR +S G E+M+I ++ +
Sbjct: 186 DEINNNGEVRYLEVRRSKSTG------------------EMMVIL---------VCLHKD 218
Query: 498 FERLAKAFAAGATASSPSLPLTALVIQDHQGVSNV--APADAPLRLLSIPKADGEPEESN 555
F +L A + P + + L++ + +NV P D + N
Sbjct: 219 FMQLPNV--AAEVSQIPGV--SGLILNHNPKKTNVILGPKDYLVF-------------GN 261
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
D +I D I +L+F ISP +FFQ+N+L +LY+L ADL PD ++ D G GTI
Sbjct: 262 D----QITDQIGDLKFRISPQSFFQINSLQTPRLYNLAIKQADLKPDDVVIDAYSGIGTI 317
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
GL++A V V GIE+ A+ DA NA++N I N ++ KAE++M
Sbjct: 318 GLSVAKHVKAVRGIEVVRDAIKDAKDNAKLNDITNAKYYLGKAEEIM 364
>gi|317498282|ref|ZP_07956581.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 5_1_63FAA]
gi|316894491|gb|EFV16674.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 5_1_63FAA]
Length = 454
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 132/309 (42%), Gaps = 55/309 (17%)
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
E I GSP V+GYRNK EFS G ++ P +G N + + DC V
Sbjct: 115 EEIKGSPKVHGYRNKMEFSFGDEVKDGPLALGMHKKNTFHDIVNI---TDCQIVDNDYNL 171
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
QQ +LP +++ ++ G++R L VR S G L VNI V S+V
Sbjct: 172 IVKCALNIAQQMELPFYHKMRHEGYFRHLVVRRAESSGDIL------VNI--VTTSQV-- 221
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVI----QDHQGVSNVAPAD 536
++ +L A LPL+ +I + +++V AD
Sbjct: 222 --------------EADLTKLRDALL--------ELPLSGKIIGILHTTNDSLADVVQAD 259
Query: 537 APLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDW 596
L + ++ I L+F ISP +FFQ NTL AE LY D+
Sbjct: 260 KIDILYG---------------QDYFYEEILGLKFKISPFSFFQTNTLGAEVLYKTARDF 304
Query: 597 ADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCA 656
D ++FD+ GTGTI LA V+G+E+ AV A NAE+NG+ NC F+
Sbjct: 305 VGETKDKVIFDLYSGTGTIAQMLAPVAKKVVGVEIVEEAVEAAKVNAELNGLDNCEFIAG 364
Query: 657 KAEDVMGSL 665
V+ L
Sbjct: 365 DVLKVVDEL 373
>gi|429763343|ref|ZP_19295695.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerostipes hadrus
DSM 3319]
gi|429178919|gb|EKY20184.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerostipes hadrus
DSM 3319]
Length = 455
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 132/309 (42%), Gaps = 55/309 (17%)
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
E I GSP V+GYRNK EFS G ++ P +G N + + DC V
Sbjct: 115 EEIKGSPKVHGYRNKMEFSFGDEVKDGPLALGMHKKNTFHDIVNI---TDCQIVDNDYNL 171
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
QQ +LP +++ ++ G++R L VR S G L VNI V S+V
Sbjct: 172 IVKCALNIAQQMELPFYHKMRHEGYFRHLVVRRAESSGDIL------VNI--VTTSQV-- 221
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVI----QDHQGVSNVAPAD 536
++ +L A LPL+ +I + +++V AD
Sbjct: 222 --------------EADLTKLRDALL--------ELPLSGKIIGILHTTNDSLADVVQAD 259
Query: 537 APLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDW 596
L + ++ I L+F ISP +FFQ NTL AE LY D+
Sbjct: 260 KIDILYG---------------QDYFYEEILGLKFKISPFSFFQTNTLGAEVLYKTARDF 304
Query: 597 ADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCA 656
D ++FD+ GTGTI LA V+G+E+ AV A NAE+NG+ NC F+
Sbjct: 305 VGETKDKVIFDLYSGTGTIAQMLAPVAKKVVGVEIVEEAVEAAKVNAELNGLDNCEFIAG 364
Query: 657 KAEDVMGSL 665
V+ L
Sbjct: 365 DVLKVVDEL 373
>gi|257868017|ref|ZP_05647670.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
EC30]
gi|257874347|ref|ZP_05654000.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
EC10]
gi|257802100|gb|EEV31003.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
EC30]
gi|257808511|gb|EEV37333.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
EC10]
Length = 474
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 98/373 (26%), Positives = 155/373 (41%), Gaps = 75/373 (20%)
Query: 301 RDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCK 360
R + PL+H+SY QL K+ + +L K+ + LPE +K+ P
Sbjct: 100 RTGIAPLSHLSYDKQLAFKQQQVENVLAKIAK-----------LPEIKVKA------PIG 142
Query: 361 LEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
+E P GYRNK + V + K T GF N V + + PN+ + K
Sbjct: 143 ME----KPF--GYRNKAQIPVQ-KIHGKLTTGFYRKNSHTLVPIEDFYIQDPNIDQAIIK 195
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
I Q F ++ +N + GF R + VR G G E+M+
Sbjct: 196 VRDILQRF----NVKAYNEEAHEGFLRHIVVRRGHHSG------------------EMMV 233
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSNVAPADAPL 539
+ F E +A+ +P VIQ+ ++ +NV +
Sbjct: 234 VLVTRKPKFFKG------EEIAEVI-------HEEIPEVVSVIQNINEEKTNVIMGEFER 280
Query: 540 RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
L ++ I D + F IS +F+Q+NT E LY + A L
Sbjct: 281 VLYG---------------KSSIDDQLLGKTFQISAKSFYQINTAQTEVLYQTAFEMAQL 325
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659
+ ++ D G GTIG++LA RV V+G+E+ AV+DA NA+ NG++N + KAE
Sbjct: 326 SENDIVVDAYAGIGTIGISLADRVKEVLGMEVIPEAVNDAKANAKRNGVENVHYFIGKAE 385
Query: 660 DVMGSLLKDYLNP 672
+M L++ + P
Sbjct: 386 KIMPQWLREGIQP 398
>gi|167766442|ref|ZP_02438495.1| hypothetical protein CLOSS21_00948 [Clostridium sp. SS2/1]
gi|167711851|gb|EDS22430.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. SS2/1]
gi|291560880|emb|CBL39680.1| 23S rRNA m(5)U-1939 methyltransferase [butyrate-producing bacterium
SSC/2]
Length = 543
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 131/309 (42%), Gaps = 55/309 (17%)
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
E I GSP V+GYRNK EFS G ++ P +G N + + DC V
Sbjct: 113 EEIKGSPKVHGYRNKMEFSFGDEVKDGPLALGMHKKNTFHDIVNI---TDCQIVDNDYNL 169
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
QQ +LP +++ ++ G++R L VR S G L VNI V S+V
Sbjct: 170 IVKCALNIAQQMELPFYHKMRHEGYFRHLVVRRAESSGDIL------VNI--VTTSQV-- 219
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVI----QDHQGVSNVAPAD 536
++ +L LPL+ +I + +++V AD
Sbjct: 220 --------------EADLTKLRDTLL--------ELPLSGKIIGILHTTNDSLADVVQAD 257
Query: 537 APLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDW 596
L + ++ I L+F ISP +FFQ NTL AE LY D+
Sbjct: 258 KIDILYG---------------QDYFYEEILGLKFKISPFSFFQTNTLGAEILYKTARDF 302
Query: 597 ADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCA 656
D ++FD+ GTGTI LA V+G+E+ AV A NAE+NG+ NC F+
Sbjct: 303 VGETKDKVIFDLYSGTGTIAQMLAPVAKKVVGVEIVEEAVEAAKVNAELNGLDNCEFIAG 362
Query: 657 KAEDVMGSL 665
V+ L
Sbjct: 363 DVLKVVDEL 371
>gi|324506298|gb|ADY42693.1| tRNA (uracil-5-)-methyltransferase A [Ascaris suum]
Length = 693
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 111/438 (25%), Positives = 172/438 (39%), Gaps = 103/438 (23%)
Query: 170 LVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFE--SVEQLKNAVEELEGISI 227
L +LPR +K FLA H L+KS+ +K M V F S E+ + A++ L G +
Sbjct: 69 LQNLPRYMGHKQIKTFLAKH--LHKSSLRKIRMFSDTVYFSLSSPEEARKAIDLLNGFEL 126
Query: 228 GNKTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEG 287
R I +P + G S S P
Sbjct: 127 KG----------RKMTARICAPEPIKGRDISRSHSDTPVS-------------------- 156
Query: 288 LAGDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKA-CPNGVSLPE 346
+SARD+VTPLA + Y+ QLE K ++ L R A + ++
Sbjct: 157 ----------RSARDIVTPLADIDYNEQLERKMADAKRLATTLVRQMVSANVKDARAINA 206
Query: 347 WIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVE 406
W + ++ I SP +GYRNKCEF+VG+ L+ VGF+ G F + +
Sbjct: 207 WKL-----------VQPIRRSPQTSGYRNKCEFTVGHDLEGNICVGFVGGRFSASLHYIL 255
Query: 407 EPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENL 466
C N+S+ + FQ+F+ S+ +N F+ G W+ LTVRE
Sbjct: 256 PMDKCTNISDRMKGIVNAFQKFVVDSEQAPFNEFERIGLWKMLTVREF------------ 303
Query: 467 EVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDH 526
+ +VM+I + T +SE E L +++
Sbjct: 304 --------VDDVMIIVTIFPMT------DSEKEG----------------QLKEALVERF 333
Query: 527 QGVSNVAPADAPLRLLSI-----PKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQV 581
V ++ + R+ SI A P + I+++I +RF +SP AFFQ
Sbjct: 334 LRVDALSEEENKFRVTSIYWQKLANASDPPIYEHIAGTPYIYETIVGVRFRVSPGAFFQT 393
Query: 582 NTLAAEKLYSLGGDWADL 599
N+ A LYS + +L
Sbjct: 394 NSYGAAVLYSTIAEKTNL 411
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 39/73 (53%), Gaps = 10/73 (13%)
Query: 603 TLLFDVCCGTGTIGLTLAHRVG--------MVIGIEMNASAVSDAHRNAEINGI--KNCR 652
T++ DVCCGTGTIGL L + ++GIE+ A+ DA NA N + C
Sbjct: 523 TVILDVCCGTGTIGLCLLSLLKNSKSAGRRYLVGIEVVPEAIEDAKCNASENMFTEEECC 582
Query: 653 FVCAKAEDVMGSL 665
FV KAE+V L
Sbjct: 583 FVSGKAEEVFRGL 595
>gi|334326476|ref|XP_001372851.2| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog [Monodelphis
domestica]
Length = 537
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 98/369 (26%), Positives = 155/369 (42%), Gaps = 39/369 (10%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
D + PL ++Y QL+ K S+ + L+ L RK G +PE + E L L
Sbjct: 111 DQMLPLWRLNYEEQLKVKFESLKKNLETLETRLRKI---GAGVPE--PSAAESKRLCSLL 165
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
+ SP+++GYRNK F + TVG+ L ++ +P ++ E +
Sbjct: 166 HPFIPSPVIDGYRNKSSFCINRGPDGNSETVGYYLKSWGGSNIFCVQPSHLKDIPEKHNQ 225
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
A F+ FLQQS L + + G W +L VR + M+
Sbjct: 226 IAQCFELFLQQSKLSSYIDSQKGGLWHELIVRT-------------------TFLGHTMV 266
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
I + + E + + F+ G + LT+L +++ S+ + P
Sbjct: 267 IIIFNPQELSQEEFCVQKEEIKEFFSTGPGSVCD---LTSLYVKERVLFSSSSITRTPRH 323
Query: 541 --LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWAD 598
L GEP + + I L+F ISP AFFQ+NT AAE LY G+
Sbjct: 324 QELTPFQLLAGEP---------YLFEEILGLKFRISPGAFFQLNTSAAEVLYRTVGELGR 374
Query: 599 LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658
+ +T++ D GTG GL+LA + V + + A+ DA A NGI N F
Sbjct: 375 VDSNTVILDFSHGTGATGLSLARQTSKVFRMGLVGEALEDAKWTAAFNGITNWEFCPGNV 434
Query: 659 EDVMGSLLK 667
++M +L+
Sbjct: 435 NEIMSQILE 443
>gi|317502259|ref|ZP_07960432.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 8_1_57FAA]
gi|336440301|ref|ZP_08619893.1| hypothetical protein HMPREF0990_02287 [Lachnospiraceae bacterium
1_1_57FAA]
gi|316896374|gb|EFV18472.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 8_1_57FAA]
gi|336013582|gb|EGN43459.1| hypothetical protein HMPREF0990_02287 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 590
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 98/419 (23%), Positives = 171/419 (40%), Gaps = 107/419 (25%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGG-----LPCKL 361
+ MSY QLE K+ + L++ IGG L C
Sbjct: 103 IQEMSYEKQLEFKERKVRGNLER------------------------IGGFSSELLECTK 138
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKY 421
E I+G YRNK +F G + P GF G + + +C + +
Sbjct: 139 EPIIGMETPFYYRNKAQFPFGTDKEGNPVTGFYAGRTHDIIANT----NCILGAAVNEHI 194
Query: 422 ASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLI 481
+F+++ + ++ +G +R + +R G + E+M+
Sbjct: 195 LESILDFMKKYKIRSYDEKTGTGLFRHVLLRYGFTT------------------KEIMVC 236
Query: 482 AQVSSATFDDAVVNSEF--------ERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVA 533
V+ D A + E+ E LAK + +SP+ T +++ D
Sbjct: 237 FVVNK---DKADKSGEWFPHQKELVEELAKIDGMTSITASPNTKRTNVIMGD-------- 285
Query: 534 PADAPLRLLSIPKADGEPEESNDVV--EARIHDSISNLRFCISPTAFFQVNTLAAEKLYS 591
+ +V+ + I D I ++++ ISP +F+QVN + EKLYS
Sbjct: 286 --------------------TFEVLWGQGYITDYIGSVKYQISPLSFYQVNPVQTEKLYS 325
Query: 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNC 651
++A L D ++D+ CG GTI L LA + V G+E+ A+ DA NA +NGI+N
Sbjct: 326 QALEYAGLKGDETVWDLYCGIGTISLFLAQKAKQVYGVEIVPPAIDDARENALLNGIENA 385
Query: 652 RFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGCSGQ 710
+F K+E+++ KDY E++H E ++ ++ + + P +GC +
Sbjct: 386 QFFVGKSEEILPKYYKDY------EEQHGGEKAHADVIVVD---------PPRKGCDAE 429
>gi|336435675|ref|ZP_08615390.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 1_4_56FAA]
gi|336001128|gb|EGN31274.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 1_4_56FAA]
Length = 489
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 100/401 (24%), Positives = 160/401 (39%), Gaps = 84/401 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
+ MSY QL K+ + L+++ G S PE K+ ++ I+G
Sbjct: 82 IQEMSYERQLAFKQAKVKGNLERI---------GGFS-PEVTEKT---------MDPIVG 122
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
YRNK +F G P GF G + + E DC + + +
Sbjct: 123 MDEPFYYRNKAQFPFGTDKAGNPVTGFYAGRTHD----IIENTDCALGISVNKEILELTL 178
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
EF+++ + +N G R +R G G E+M+ ++
Sbjct: 179 EFMKRYKIASYNETTGEGLIRHALIRYGFKTG------------------EIMVCYVING 220
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
A V E K +T++ I ++ +NV + L
Sbjct: 221 KKIPHAEVLVEKLSAIKG-------------MTSITISPNRNRTNVIMGETYETLWG--- 264
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
+ I D I ++R+ ISP +F+QVN EKLY L ++A L ++
Sbjct: 265 ------------QGYITDYIGDVRYQISPLSFYQVNPAQTEKLYGLALEYAQLSGHETVW 312
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
D+ CG GTI L LA + V G+E+ A+ DA RNA+INGI+N RF KAE+V+
Sbjct: 313 DLYCGIGTISLFLAQQAREVQGVEIVPQAIEDARRNAKINGIENARFYVGKAEEVLPKYY 372
Query: 667 KDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGC 707
++Y EH E + ++ + + P +GC
Sbjct: 373 ENYAK------EHPGEHARADVIVVD---------PPRKGC 398
>gi|257876913|ref|ZP_05656566.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
EC20]
gi|257811079|gb|EEV39899.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
EC20]
Length = 474
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 97/373 (26%), Positives = 152/373 (40%), Gaps = 75/373 (20%)
Query: 301 RDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCK 360
R + PL+H+SY QL K+ + +L K+ + LPE K
Sbjct: 100 RTGIAPLSHLSYDKQLAFKQQQVENVLAKIAK-----------LPE------------IK 136
Query: 361 LEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
+ +G GYRNK + V + K T GF N V + + PN+ + K
Sbjct: 137 VNAPIGMEKPFGYRNKAQIPVQ-KIHGKLTTGFYRKNSHTLVPIEDFYIQDPNIDQAIIK 195
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
I Q F ++ +N + GF R + VR G G E+M+
Sbjct: 196 VRDILQRF----NVKAYNEEAHEGFLRHIVVRRGHHSG------------------EMMV 233
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSNVAPADAPL 539
+ F E +A+ +P VIQ+ ++ +NV +
Sbjct: 234 VLVTRKPKFFKG------EEIAEVI-------HEEIPEVVSVIQNINEEKTNVIMGEFER 280
Query: 540 RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
L ++ I D + F IS +F+QVNT E LY + A L
Sbjct: 281 VLYG---------------KSSIDDQLLGKTFQISAKSFYQVNTAQTEVLYQTAFEMAHL 325
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659
+ ++ D G GTIG++LA RV V+G+E+ AV+DA NA+ NG++N + KAE
Sbjct: 326 SENDIVVDAYAGIGTIGISLADRVKEVLGMEVIPEAVNDAKANAKRNGVENVHYFIGKAE 385
Query: 660 DVMGSLLKDYLNP 672
+M L++ + P
Sbjct: 386 KIMPQWLREGIQP 398
>gi|260590015|ref|ZP_05855928.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Blautia hansenii DSM
20583]
gi|260539527|gb|EEX20096.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Blautia hansenii DSM
20583]
Length = 462
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 98/357 (27%), Positives = 153/357 (42%), Gaps = 64/357 (17%)
Query: 310 MSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPL 369
MSY QL K + +++ + + G P++I EGI GSP
Sbjct: 86 MSYEEQLNMKAAQVKKLIDEAVIRGGQVDTEGK--PDYI------------FEGIKGSPQ 131
Query: 370 VNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTA-VEEPVDCPNVSEIACKYASIFQEF 428
YRNK EFS G + P LG ++G T V DC V E K + E+
Sbjct: 132 EFAYRNKMEFSFGDKYKDGP---LSLGLHKKGSTYDVLNACDCKLVHEDMTKILTCILEY 188
Query: 429 LQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSAT 488
++ +++ +++GF R L +R G + G E+ ++ V SE+
Sbjct: 189 CREEGFSYYHKMQHTGFLRHLLLRRGNTTG--------EILVNLVTTSEI---------- 230
Query: 489 FDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKAD 548
++F L K A LPL ++ ++N L + ++D
Sbjct: 231 ------ETDFAELQKRLLA--------LPLEGKIVGFLHIINN--------SLSDVVRSD 268
Query: 549 GEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDV 608
E + ++ I L+F I+P +FFQ N+ AE LY ++ + +FD+
Sbjct: 269 ---ETRILYGQDYFYEEILGLKFKITPFSFFQPNSYGAEVLYKTAREYIGDTKEMTVFDL 325
Query: 609 CCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
GTGTI +A VIG+E+ AV A NA +NGI+NCRF+ A DV+ L
Sbjct: 326 YSGTGTISQIMASVAKEVIGVEIVEEAVKAAGENAHLNGIENCRFI---AGDVLKVL 379
>gi|331084332|ref|ZP_08333436.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 6_1_63FAA]
gi|330401596|gb|EGG81177.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 6_1_63FAA]
Length = 472
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 98/357 (27%), Positives = 153/357 (42%), Gaps = 64/357 (17%)
Query: 310 MSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPL 369
MSY QL K + +++ + + G P++I EGI GSP
Sbjct: 86 MSYEEQLNMKAAQVKKLIDEAVIRGGQVDTEGK--PDYI------------FEGIKGSPQ 131
Query: 370 VNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTA-VEEPVDCPNVSEIACKYASIFQEF 428
YRNK EFS G + P LG ++G T V DC V E K + E+
Sbjct: 132 EFAYRNKMEFSFGDEYKDGP---LSLGLHKKGSTYDVLNACDCKLVHEDMTKILTCILEY 188
Query: 429 LQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSAT 488
++ +++ +++GF R L +R G + G E+ ++ V SE+
Sbjct: 189 CREEGFSYYHKMQHTGFLRHLLLRRGNTTG--------EILVNLVTTSEI---------- 230
Query: 489 FDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKAD 548
++F L K A LPL ++ ++N L + ++D
Sbjct: 231 ------ETDFAELQKRLLA--------LPLEGKIVGFLHIINN--------SLSDVVRSD 268
Query: 549 GEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDV 608
E + ++ I L+F I+P +FFQ N+ AE LY ++ + +FD+
Sbjct: 269 ---ETRILYGQDYFYEEILGLKFKITPFSFFQPNSYGAEVLYKTAREYIGDTKEMTVFDL 325
Query: 609 CCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
GTGTI +A VIG+E+ AV A NA +NGI+NCRF+ A DV+ L
Sbjct: 326 YSGTGTISQIMASVAKEVIGVEIVEEAVKAAGENAHLNGIENCRFI---AGDVLKVL 379
>gi|422848369|ref|ZP_16895045.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK115]
gi|325690901|gb|EGD32902.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK115]
Length = 464
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 106/416 (25%), Positives = 167/416 (40%), Gaps = 77/416 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDGS----GLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGEL + G G E L + R + L H++Y QL
Sbjct: 46 ENALPGELIRMRVLKVNKKIGFGKVEEFFRTSDQRNENLDMAYLRTGIADLGHLNYPAQL 105
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K+ + L K+ + P + + + PL GYRNK
Sbjct: 106 DFKRKQVKDSLYKIAGLSDVEVPPTLGMEQ---------------------PL--GYRNK 142
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + + + + P + ++ ++ L++ DL
Sbjct: 143 AQVPVR-RVNGQLETGFFRKNSHDLLPIEDFYIQDPVIDQVIL----FTRDLLRRFDLKP 197
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
++ + +G R L VR G G E+M+I + V
Sbjct: 198 YDEQEKTGLIRNLVVRRGHYSG------------------EIMVILVTTRPKI--FRVEQ 237
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESND 556
+RL +AF A T +IQ+ + A R+L
Sbjct: 238 LIDRLTEAFPAIKT-----------IIQNINDQNTNAIFGKEWRVLY------------- 273
Query: 557 VVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIG 616
+ I D + F IS AF+QVNT AEKLY D+ADL D ++ D G GTIG
Sbjct: 274 -GQDYIMDQMLGNNFQISGPAFYQVNTQMAEKLYQTAIDFADLREDDVVIDAYSGIGTIG 332
Query: 617 LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
L++A V V G+E+ AV ++ +NA +NGI N +VC AE+ M + LK+ + P
Sbjct: 333 LSVAKHVKEVYGVEVIPEAVENSQKNATLNGITNAHYVCDTAENAMKTWLKEGIQP 388
>gi|295094140|emb|CBK83231.1| 23S rRNA m(5)U-1939 methyltransferase [Coprococcus sp. ART55/1]
Length = 550
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 89/307 (28%), Positives = 135/307 (43%), Gaps = 47/307 (15%)
Query: 358 PCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTA-VEEPVDCPNVSE 416
P + +GIL SP+ GYRNK EFS G + P LG ++ T + + DC V++
Sbjct: 113 PYEWQGILASPVTKGYRNKMEFSFGDEYKDGP---LALGLHKKNSTYDIVQMDDCYIVND 169
Query: 417 IACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNIS 476
K EF + + LP + + +++G R L +R + G
Sbjct: 170 DLNKIVKYTVEFCRAAGLPYYKKMQHTGLLRHLVIRRSATNGD----------------- 212
Query: 477 EVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPAD 536
+L+ V+S DA+ F R LPL I N + AD
Sbjct: 213 --LLVNLVTSTQNLDALDLDAFVR-----------GLLDLPLEG-KIAGILHTENDSMAD 258
Query: 537 APLRLLSIPKADGEPEESNDVVEAR-IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGD 595
A + + +N + I++++ L+F ISP +FFQ NT +AE+LY
Sbjct: 259 AVI-----------SDRTNLLYGTEYIYETVLGLQFKISPFSFFQTNTKSAERLYDKARS 307
Query: 596 WADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVC 655
+ D ++FD+ GTGTI LA VIG+E+ AV A NAE+NG+ NC F+
Sbjct: 308 YVGDTKDAVIFDLYSGTGTIAQLLAPVAKKVIGVEIVEEAVEAARVNAELNGLDNCEFIA 367
Query: 656 AKAEDVM 662
V+
Sbjct: 368 GDVLKVI 374
>gi|170594415|ref|XP_001901959.1| hypothetical protein [Brugia malayi]
gi|158590903|gb|EDP29518.1| conserved hypothetical protein [Brugia malayi]
Length = 659
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 115/427 (26%), Positives = 174/427 (40%), Gaps = 108/427 (25%)
Query: 298 KSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGL 357
++AR+ VTPLA + YS QLE K + ++ + A NG + +I L
Sbjct: 184 RTARERVTPLADIPYSEQLEIKMKDVKRIAMNFLKEMIVAHVNGAN-------RIDIESL 236
Query: 358 PCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVD-CPNVSE 416
+E I SP + GYRNKCEF++G+++ VGF+ G F V PVD C N+S
Sbjct: 237 ---IESIRPSPRITGYRNKCEFTIGHNIDGHICVGFVGGRFAANEHFV-VPVDTCDNISA 292
Query: 417 IACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVRE-GRSPGKPLDVENLEVNISEVNI 475
+ F++ + +S +N F+ G W+ L++RE G + + +E SE +
Sbjct: 293 HMKRIVGAFEKLVLESGESPFNEFERKGVWKMLSIREFGSDVMMIVTIFPMEDKESENAL 352
Query: 476 SEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPA 535
+++ + D NS F + + A AS P VI +H A
Sbjct: 353 KKLVEERFLQLGNLSDE--NSFFRITSLYWQRLANASDP-------VIYEHI-------A 396
Query: 536 DAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGD 595
AP I++ I + RF +SP++FFQ N+ A LY +
Sbjct: 397 GAPY----------------------IYEIILDARFRVSPSSFFQTNSACAAILYKTIAE 434
Query: 596 WADL----------------------------------GPD----------------TLL 605
L GP TL+
Sbjct: 435 KCGLCNVDNAAAQEAINADIVTAVFEKDLEEFAYENIDGPKTKIRKLEKVDTFEQQATLI 494
Query: 606 FDVCCGTGTIGLTLAHRVGMV-----IGIEMNASAVSDAHRNAEINGI--KNCRFVCAKA 658
D+CCGTGTIG++L V +GIE+ AV DA NA N + + +FV KA
Sbjct: 495 LDICCGTGTIGISLMKLAKTVSRKFLVGIEIIPEAVEDATINAIDNNLPSDSYKFVVGKA 554
Query: 659 EDVMGSL 665
E++ L
Sbjct: 555 ENIFFRL 561
>gi|336054639|ref|YP_004562926.1| RNA methyltransferase [Lactobacillus kefiranofaciens ZW3]
gi|333958016|gb|AEG40824.1| RNA methyltransferase [Lactobacillus kefiranofaciens ZW3]
Length = 456
Score = 109 bits (273), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 104/407 (25%), Positives = 173/407 (42%), Gaps = 83/407 (20%)
Query: 262 SAVPGELAEAHASSNGHEDGNGNDEGLAGDG-SGLKVKSARDV---VTPLAHMSYSVQLE 317
+A+PGE+ A E + + +KVK + V + LAH+ Y QL+
Sbjct: 33 NALPGEVVSAKILKVKKNFAFAKIEKIKKESPDRVKVKLNQGVQSGLASLAHIKYDKQLD 92
Query: 318 HKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKC 377
K+N + +LKK +++ E+G L SP GYRNK
Sbjct: 93 FKRNQVVNLLKKAH-----------------LENIEVGE-------TLASPEEVGYRNKA 128
Query: 378 EFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVW 437
+ V + + +GF + + + P + + I +++ +P +
Sbjct: 129 QVPVR-EVNGQLEIGFFRRHSHDLMPLTHFFTTDPEIDRVLVAVRDILRKY----KVPAY 183
Query: 438 NRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSE 497
+ N+G R L VR +S G E+M+I ++ +
Sbjct: 184 DEINNNGEVRYLEVRRSKSTG------------------EMMVIL---------VCLHKD 216
Query: 498 FERLAKAFAAGATASSPSLPLTALVIQDHQGVSNV--APADAPLRLLSIPKADGEPEESN 555
F +L A + P + + L++ + +NV P D + N
Sbjct: 217 FMQLPNV--AAEVSQIPGV--SGLILNHNPKKTNVILGPKDYLVF-------------GN 259
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
D +I+D I +L+F IS +FFQ+N+L +LY+L ADL PD ++ D G GTI
Sbjct: 260 D----QINDQIGDLKFRISSQSFFQINSLQTPRLYNLAIKQADLKPDDVVIDAYSGIGTI 315
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
GL++A V V GIE+ A+ DA NA++N I N ++ KAE++M
Sbjct: 316 GLSVAKHVKAVRGIEVVRDAIKDAKDNAKLNDITNAKYYLGKAEEIM 362
>gi|291548601|emb|CBL24863.1| 23S rRNA m(5)U-1939 methyltransferase [Ruminococcus torques L2-14]
Length = 567
Score = 109 bits (273), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 85/336 (25%), Positives = 138/336 (41%), Gaps = 65/336 (19%)
Query: 372 GYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQ 431
GYRNK +F G + P GF G + + DC E + I +++++
Sbjct: 128 GYRNKAQFPFGADKEGNPITGFYAGRTHDIIANT----DCALGVEKNKEILEIILQYMRE 183
Query: 432 SDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDD 491
+ + ++ G R + +R G E+M+ V+
Sbjct: 184 NKIKSYDEKTGKGLIRHVLIRYG------------------FKTKEIMVCLVVNGKRLPK 225
Query: 492 AVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEP 551
A ERL + +T++ I + NV D+ L
Sbjct: 226 A------ERLIEKLIQIEG-------MTSITISPNTRRDNVIMGDSYEILWG-------- 264
Query: 552 EESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCG 611
+ I D I N+++ ISP +F+QVN + EKLY L ++ADL D ++D+ CG
Sbjct: 265 -------QGYITDYIGNVKYQISPLSFYQVNPVQTEKLYRLALEYADLKGDETVWDLYCG 317
Query: 612 TGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLN 671
GTI L LA + V G+E+ A+ DA NA+IN I N F KAE+V+ +Y
Sbjct: 318 IGTISLFLAQKAKQVYGVEIVPQAIDDAKENAKINAIDNAEFFVGKAEEVLPEYYAEY-- 375
Query: 672 PLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGC 707
E EH + ++ ++ + + P +GC
Sbjct: 376 ----EREHNGKTAHADVIVVD---------PPRKGC 398
>gi|167767439|ref|ZP_02439492.1| hypothetical protein CLOSS21_01958 [Clostridium sp. SS2/1]
gi|167710731|gb|EDS21310.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. SS2/1]
gi|291558726|emb|CBL37526.1| 23S rRNA m(5)U-1939 methyltransferase [butyrate-producing bacterium
SSC/2]
Length = 457
Score = 109 bits (273), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 98/384 (25%), Positives = 165/384 (42%), Gaps = 93/384 (24%)
Query: 297 VKSARDVVTP------------LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSL 344
+++++D V+P L H++Y QLE+K N + L++
Sbjct: 62 IEASKDRVSPRCSKARQCGGCTLQHLAYEKQLEYKFNKVKNCLER--------------- 106
Query: 345 PEWIMKSREIGGLPC---KLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREG 401
IGGL K+E ILG YRNK +F VGY + GF G
Sbjct: 107 ---------IGGLENIEEKMEPILGMEEPFYYRNKAQFPVGYDKEGNLITGFYAGRTHHI 157
Query: 402 VTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPL 461
+ + P +I K ++++++++ ++ + G R + R G G+ +
Sbjct: 158 IDCTHCMIQHPVNEQILLK----VLDYMKKNNITAYDEKTHKGLVRHIVTRVGFKTGEIM 213
Query: 462 DVENLEVNISEVNISEV-MLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTA 520
L VN S+ N+ + MLI D++ E +T+
Sbjct: 214 VC--LVVNGSKKNLRNLEMLI---------DSLTEVE-------------------GMTS 243
Query: 521 LVIQDHQGVSNVAPADAPLRLL--SIPKADGEPEESNDVVEARIHDSISNLRFCISPTAF 578
+ + ++ +N R+L I + G+P I+D I N+++ I P +F
Sbjct: 244 ICVNINKEKTN--------RILGSKIEEVYGKP---------YIYDYIGNVKYQIGPLSF 286
Query: 579 FQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSD 638
FQVN + LY ++ADL + ++D+ CG GTI L LA + V G+E+ A+ D
Sbjct: 287 FQVNPTQTKVLYEKAMEYADLKGEETVWDLYCGIGTISLFLAQKAKKVYGVEIVKEAIDD 346
Query: 639 AHRNAEINGIKNCRFVCAKAEDVM 662
A NA++NG N F KAE+V+
Sbjct: 347 ARLNAKMNGFDNAEFFVGKAEEVL 370
>gi|308506397|ref|XP_003115381.1| hypothetical protein CRE_18824 [Caenorhabditis remanei]
gi|308255916|gb|EFO99868.1| hypothetical protein CRE_18824 [Caenorhabditis remanei]
Length = 636
Score = 109 bits (273), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 120/467 (25%), Positives = 189/467 (40%), Gaps = 101/467 (21%)
Query: 141 EDAVEEVMMTEAVVDGDGDGDQDVELSKCLVHLP-------RKWHSDNLKKFLADHGILY 193
ED + V TE ++ D +D + + VH+ K L+K L D
Sbjct: 10 EDLPKNVTETEEILSKSEDTKEDSGIDQDRVHIKGIPTFIGFKQFKKLLEKILGD----V 65
Query: 194 KSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRSFDKNIKSPMTLS 253
KS K + +V FE+ E + A++ L+G K + A++ KN+++P T
Sbjct: 66 KSKKVRYMADYAYVTFENAEDAQKAIKLLDGYDY-KKYVFTAHLAATEV-KNLRAPTT-- 121
Query: 254 GNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLKVKSARDVVTPLAHMSYS 313
++ P E K+AR+ VTPLA M Y
Sbjct: 122 -------KNTEPAEQ-----------------------------KTARESVTPLAEMEYE 145
Query: 314 VQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGY 373
QLE K+ + ++ KL +G I+ + G +LE IL SP GY
Sbjct: 146 KQLELKQQNSTNVMDKL---------HGQLQRNKIINIGKQGEFRKRLETILPSPKTTGY 196
Query: 374 RNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSD 433
RNKCEF++G+ L +GF+ G F E V PV+ V+ ++++++
Sbjct: 197 RNKCEFTIGHDLNRDICIGFVGGRFSENRHFVIPPVNVDIVTPQMMAILKDTHDYVKETG 256
Query: 434 LPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAV 493
L ++ F GFWR LTVRE +VMLI V +
Sbjct: 257 LEPFDEFDRKGFWRMLTVREFG--------------------GDVMLIFTVFPLESKEKT 296
Query: 494 VNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAP-LRLLSIPKADGEPE 552
+ +++A F T + S + ++ Q+ +S D P +L+ G P
Sbjct: 297 EEIQ-KQIADRFLNFETFTEKSYRVCSIYWQEMVHIS-----DTPNFKLIG-----GTP- 344
Query: 553 ESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
I++S+ + RF +SP AFFQ N+ A LYS G+ L
Sbjct: 345 --------YIYESLLDCRFRVSPPAFFQTNSQGASVLYSTIGELCGL 383
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 603 TLLFDVCCGTGTIGLTLAHRVG-----MVIGIEMNASAVSDAHRNAEINGI-KNCRFVCA 656
T+L D+CCGTGTIG L + IGIEM AV DA +NA+ N + K C+++
Sbjct: 470 TILLDICCGTGTIGQCLLKNIQSSQKVFCIGIEMIVEAVEDAKQNAKQNKMEKCCKYIAG 529
Query: 657 KAEDVMGSL 665
KAED S+
Sbjct: 530 KAEDTFRSM 538
>gi|422870640|ref|ZP_16917133.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK1087]
gi|328946582|gb|EGG40721.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK1087]
Length = 465
Score = 109 bits (272), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 109/412 (26%), Positives = 170/412 (41%), Gaps = 77/412 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDG----SGLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGEL + G G E L + R + L H++YS QL
Sbjct: 46 ENALPGELIRMRVLKVNKKIGFGKVEEFLRTSDQRNENLDMAYLRTGIADLGHLNYSAQL 105
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K+ + L K+ G+S ++ LP LG GYRNK
Sbjct: 106 DFKRKQVKDSLYKIA---------GLS---------DVEVLPT-----LGMEQPLGYRNK 142
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + + + + P + ++ ++ L++ DL
Sbjct: 143 AQVPVR-RVNGQLETGFFRKNSHDLLPIEDFYIQDPVIDQVIL----FTRDLLRRFDLKP 197
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
++ + +G R L VR G G E+MLI + V
Sbjct: 198 YDEQEKTGLIRNLVVRRGHYSG------------------EIMLILVTTRPKI--FRVEQ 237
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESND 556
ERL +AF P ++Q+ N P +A I D D
Sbjct: 238 LMERLTEAF-----------PAIKSIMQN----INDQPGNA------IFGKDWRTLYGQD 276
Query: 557 VVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIG 616
+ R+ + F IS AF+QVNT AEKLY D+++L D ++ D G GTIG
Sbjct: 277 YITDRMLGN----DFQISGPAFYQVNTEMAEKLYQTAIDFSELTADDVVLDAYSGIGTIG 332
Query: 617 LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
L++A V V G+E+ AV ++ +NA +NGI N +VCA AE+ + + LK+
Sbjct: 333 LSVAKHVKAVYGVEVIPEAVENSQKNAAVNGITNASYVCAPAEEAIQNWLKE 384
>gi|395238965|ref|ZP_10416865.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lactobacillus
gigeriorum CRBIP 24.85]
gi|394476969|emb|CCI86842.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lactobacillus
gigeriorum CRBIP 24.85]
Length = 449
Score = 109 bits (272), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 94/365 (25%), Positives = 152/365 (41%), Gaps = 93/365 (25%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
LAH++Y QL K+ + +LKK A + + + E + +EIG
Sbjct: 82 LAHLTYQKQLAFKRMQVVNLLKK-------AHLDSIKVNETVASPKEIG----------- 123
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
YRNK + V + K +GF + + V P + + +
Sbjct: 124 ------YRNKAQVPVRM-VSGKLEIGFFRKHSHDLVPLENFFTTDPEIDRVLLA----VR 172
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
+ L++ +P ++ + G R L VR R+ G E+M+I
Sbjct: 173 DLLREMKVPAYDELHHKGEVRYLEVRRSRATG------------------EIMVILICLH 214
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
F + +LAKA + + S V+ +H
Sbjct: 215 KDF------PQLRKLAKAISQISGVVS--------VVLNHN------------------- 241
Query: 547 ADGEPEESNDVV---------EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWA 597
P+++N ++ +A+I D I ++ F ISP +FFQ+N+L +LY L A
Sbjct: 242 ----PQKTNVILGKHDYLLAGKAQIVDKIGDISFSISPKSFFQINSLQTPRLYDLAIKQA 297
Query: 598 DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAK 657
DL P ++ D G GTIGL++A V V GIE+ AV DA+ NA++N I N +V K
Sbjct: 298 DLKPSDVVIDAYSGIGTIGLSVAKHVKEVRGIEIIDDAVRDANANAQLNQIHNASYVTGK 357
Query: 658 AEDVM 662
AE++M
Sbjct: 358 AEEIM 362
>gi|422846976|ref|ZP_16893659.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK72]
gi|325687169|gb|EGD29191.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK72]
Length = 464
Score = 109 bits (272), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 109/412 (26%), Positives = 170/412 (41%), Gaps = 77/412 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDG----SGLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGEL + G G E L + R + L H++YS QL
Sbjct: 46 ENALPGELIRMRVLKVNKKIGFGKVEEFLRTSDQRNENLDMAYLRTGIADLGHLNYSAQL 105
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K+ + L K+ G+S ++ LP LG GYRNK
Sbjct: 106 DFKRKQVKDSLYKIA---------GLS---------DVEVLPT-----LGMEQPLGYRNK 142
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + + + + P + ++ ++ L++ DL
Sbjct: 143 AQVPVR-RVNGQLETGFFRKNSHDLLPIEDFYIQDPVIDQVIL----FTRDLLRRFDLKP 197
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
++ + +G R L VR G G E+MLI + V
Sbjct: 198 YDEQEKTGLIRNLVVRRGHYSG------------------EIMLILVTTRPKI--FRVEQ 237
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESND 556
ERL +AF P ++Q+ N P +A I D D
Sbjct: 238 LMERLTEAF-----------PAIKSIMQN----INDQPGNA------IFGKDWRTLYGQD 276
Query: 557 VVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIG 616
+ R+ + F IS AF+QVNT AEKLY D+++L D ++ D G GTIG
Sbjct: 277 YITDRMLGN----DFQISGPAFYQVNTEMAEKLYQTAIDFSELTADDVVLDAYSGIGTIG 332
Query: 617 LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
L++A V V G+E+ AV ++ +NA +NGI N +VCA AE+ + + LK+
Sbjct: 333 LSVAKHVKAVYGVEVIPEAVENSQKNAAVNGITNASYVCAPAEEAIQNWLKE 384
>gi|331089004|ref|ZP_08337911.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 3_1_46FAA]
gi|330406456|gb|EGG85969.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 3_1_46FAA]
Length = 500
Score = 109 bits (272), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 98/419 (23%), Positives = 171/419 (40%), Gaps = 107/419 (25%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGG-----LPCKL 361
+ MSY QLE K+ + L++ IGG L C
Sbjct: 103 IQEMSYEKQLEFKERKVRGNLER------------------------IGGFSSELLECTK 138
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKY 421
E I+G YRNK +F G + P GF G + + +C + +
Sbjct: 139 EPIIGMETPFYYRNKAQFPFGTDKEGNPVTGFYAGRTHDIIANT----NCILGAAVNEHI 194
Query: 422 ASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLI 481
+F+++ + ++ +G +R + +R G + E+M+
Sbjct: 195 LESILDFMKKYKIRSYDEKTGTGLFRHVLLRYGFTT------------------KEIMVC 236
Query: 482 AQVSSATFDDAVVNSEF--------ERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVA 533
V+ D A + E+ E LAK + +SP+ T +++ D
Sbjct: 237 FVVNK---DKADKSGEWFPHQKELVEELAKIDGMTSITASPNTKRTNVIMGD-------- 285
Query: 534 PADAPLRLLSIPKADGEPEESNDVV--EARIHDSISNLRFCISPTAFFQVNTLAAEKLYS 591
+ +V+ + I D I ++++ ISP +F+QVN + EKLYS
Sbjct: 286 --------------------TFEVLWGQGYITDYIGSVKYQISPLSFYQVNPVQTEKLYS 325
Query: 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNC 651
++A L D ++D+ CG GTI L LA + V G+E+ A+ DA NA +NGI+N
Sbjct: 326 QALEYAGLKGDETVWDLYCGIGTISLFLAQKAKQVYGVEIVPPAIDDARENALLNGIENA 385
Query: 652 RFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGCSGQ 710
+F K+E+++ KDY E++H E ++ ++ + + P +GC +
Sbjct: 386 QFFVGKSEEILPKYYKDY------EEQHGGEKAHADVIVVD---------PPRKGCDAK 429
>gi|160937669|ref|ZP_02085029.1| hypothetical protein CLOBOL_02559 [Clostridium bolteae ATCC
BAA-613]
gi|158439314|gb|EDP17066.1| hypothetical protein CLOBOL_02559 [Clostridium bolteae ATCC
BAA-613]
Length = 459
Score = 109 bits (272), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 92/356 (25%), Positives = 145/356 (40%), Gaps = 68/356 (19%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L MSY QL+ K+ + L ++ + A EI LP I+G
Sbjct: 82 LQAMSYEEQLKFKERKVMNNLIRIGKFAED----------------EIHMLP-----IMG 120
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
YRNK +F G GF G A+ E DC E + I +
Sbjct: 121 MEEPWRYRNKAQFPFGKDKDGNVIAGFYAGR----THAIVEAEDCLLGVEENREILDIVK 176
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
F+++ + ++ + G R + +R+G G E+M+ ++
Sbjct: 177 RFMKEMKIEPYDELSHKGLVRHVLIRKGFKTG------------------EIMVCLVING 218
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
ERL + G +T++ +Q +NV + L
Sbjct: 219 NKLPSK------ERLVEMLTGGDGVKG----MTSISYSVNQEKTNVIMGKEIVNLYG--- 265
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
I D I N+++ ISP +F+QVN + E+LY ++A L + +++
Sbjct: 266 ------------PGYITDYIGNVKYQISPLSFYQVNPVQTERLYGTALEYAGLTGNEIVW 313
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
D+ CG GTI L LA + V G+E+ + A+ DA RNAEINGI N F KAE+V+
Sbjct: 314 DLYCGIGTISLFLAQKAQKVYGVEIVSQAIKDARRNAEINGIHNAEFFVGKAEEVL 369
>gi|404494023|ref|YP_006718129.1| TrmA family RNA methyltransferase [Pelobacter carbinolicus DSM
2380]
gi|77546046|gb|ABA89608.1| RNA methyltransferase, TrmA family [Pelobacter carbinolicus DSM
2380]
Length = 489
Score = 109 bits (272), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 110/421 (26%), Positives = 172/421 (40%), Gaps = 85/421 (20%)
Query: 288 LAGDGSGLKVKSARDVVT----PLAHMSYSVQLEHKKNSIAQMLKKLTRN-ARKACP--- 339
L DG G+ ++V+ P + +V+ E ++ I Q + LT++ ARK P
Sbjct: 47 LNDDGIGIGRYQGKEVLVAGSLPGEKVCVAVEHEGQRRIIGQFRRLLTKSPARKPSPCPS 106
Query: 340 ----NGVSLPEW---------IMKSREIGGLPCKLEGILGSPLVN-----GYRNKCEFSV 381
G SL K RE +L+G SP++ GYR + +V
Sbjct: 107 LRDCQGCSLMSMGYADQLDFKQTKVREALNAYPQLKGTDISPILAAEEPLGYRTSAKLAV 166
Query: 382 GYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFK 441
A+ ++G +R G V + CP + + + +E + + D+ ++N
Sbjct: 167 -----ARRNGRIVIGLYRRGSHEVADIGACPLHHPLVNRIVEVVREEIARQDIYLYNPVT 221
Query: 442 NSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERL 501
G R L ++ + GK + TF A +R
Sbjct: 222 RRGLLRYLLIKVSPATGKAM-------------------------VTFVTA------QRE 250
Query: 502 AKAFAAGATASSPSLPLTALVIQDHQGVS-NVAPADAPLRLLSIPKADGEPEESNDVVEA 560
K A A + +P V Q+ S NV LR++ G+P+
Sbjct: 251 YKRITALAKWVARKIPEVVSVQQNVNASSGNVIMGRETLRMV------GQPD-------- 296
Query: 561 RIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLA 620
+ D + N+R ISPT+FFQVN A ++Y+L WA L D+ CG G I L LA
Sbjct: 297 -LFDQVGNIRLRISPTSFFQVNHAQAARIYALVRRWAALESHEFALDLYCGIGGIALHLA 355
Query: 621 HRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDY-------LNPL 673
G VIG+EM AV +A +NA +N + NCRF+ +++ L+ D LNP
Sbjct: 356 QDAGRVIGVEMVEDAVRNAQQNAAMNNLANCRFLAGDTAELLQDLIVDLPSLATAVLNPP 415
Query: 674 R 674
R
Sbjct: 416 R 416
>gi|188588342|ref|YP_001919973.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
E3 str. Alaska E43]
gi|251777708|ref|ZP_04820628.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
E1 str. 'BoNT E Beluga']
gi|188498623|gb|ACD51759.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
E3 str. Alaska E43]
gi|243082023|gb|EES47913.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
E1 str. 'BoNT E Beluga']
Length = 450
Score = 109 bits (272), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 86/308 (27%), Positives = 138/308 (44%), Gaps = 55/308 (17%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQA-KPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKY 421
G+LGS YRNK EF+ G + ++G + G+ V+ C V E K
Sbjct: 114 GVLGSSEQWEYRNKMEFTFGDEEKGGDLSIGMHMRGKSFGIMTVDH---CKIVDEDYRKI 170
Query: 422 ASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLI 481
+ ++ + DLP + K G+ R L +R+ ++ G+ +L+
Sbjct: 171 IRLTADYFGKQDLPYYRVMKREGYLRHLVIRKAQNTGE-------------------ILV 211
Query: 482 AQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQG--VSNVAPADAPL 539
V++ D + SE+ L K+ QD++G VS + +
Sbjct: 212 NLVTTTQIDFDL--SEYVELLKS-------------------QDYKGTLVSILHTENNSF 250
Query: 540 RLLSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWA 597
IP E +V+ R I + + L F ISP +FFQ NT AE LYSL D+
Sbjct: 251 SDAVIP-------EKVNVLYGRDYIQEKLLGLNFKISPFSFFQTNTKGAESLYSLVRDFM 303
Query: 598 DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAK 657
+ ++FD+ CGTGTIG +A V+GIE+ AV A NA++NG+ NC F+
Sbjct: 304 GSSENKVVFDLYCGTGTIGQIVAPNAKKVVGIELIEEAVEAAKENAKLNGLNNCEFLAGD 363
Query: 658 AEDVMGSL 665
+++ ++
Sbjct: 364 VAEIIKTV 371
>gi|291542511|emb|CBL15621.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus bromii
L2-63]
Length = 454
Score = 108 bits (271), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 88/321 (27%), Positives = 144/321 (44%), Gaps = 52/321 (16%)
Query: 354 IGGLP-CKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCP 412
IGGL + I+ S + YRNK ++ VG GF + + DC
Sbjct: 108 IGGLDNVVFKPIISSDNITRYRNKAQYPVGLDRDGNVVTGFYSFHSHRIINCT----DCI 163
Query: 413 NVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISE 472
EI + I ++F+ +++ +++ G R + +R G G+ +
Sbjct: 164 LQPEIFARVIEITKDFIAKTNTEIYDETTGKGRLRHIYIRIGEVSGELM----------- 212
Query: 473 VNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLP-LTALVIQDHQGVSN 531
V + + +D +V ++ K+ LP L +++I ++ +N
Sbjct: 213 -----VCYVVNANGLKQEDLLV-----KMLKS----------ELPQLKSVIINSNREKTN 252
Query: 532 VAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYS 591
V + +I +D I D++ L+F ISP +F+Q+N AEKLY
Sbjct: 253 VVLGR---KNRTIYGSD------------HITDTLCGLQFKISPFSFWQINRKQAEKLYG 297
Query: 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNC 651
++A+L D +L D+ CGTGTIGLT+A +IG E+ AV DA+ NA+ NGI+N
Sbjct: 298 KAKEYANLKSDEILLDLYCGTGTIGLTMADSCKQLIGAEIVEDAVKDANENAKANGIENA 357
Query: 652 RFVCAKAEDVMGSLLKDYLNP 672
RF+C A L K+ L P
Sbjct: 358 RFICGDASAAAFQLEKEGLKP 378
>gi|154503473|ref|ZP_02040533.1| hypothetical protein RUMGNA_01297 [Ruminococcus gnavus ATCC 29149]
gi|153795573|gb|EDN77993.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus gnavus
ATCC 29149]
Length = 464
Score = 108 bits (271), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 136/332 (40%), Gaps = 55/332 (16%)
Query: 354 IGGLPCKLEGILGSPLVN-----GYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEP 408
IGG +L + P+V YRNK +F G GF G + +
Sbjct: 105 IGGFSPELLEKIADPIVGMEIPFHYRNKAQFPFGKDKNGVTVTGFYAGRTHDIIA----N 160
Query: 409 VDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEV 468
DC E + F++Q + ++ G R + +R G +
Sbjct: 161 TDCALGVEQNQEILETILSFMEQYQMEPYDEKTGKGLLRHVLIRYGFTT----------- 209
Query: 469 NISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQG 528
E+M+ +++ E+L + +T++ I +Q
Sbjct: 210 -------KEIMVCLVINAKKIPHC------EKLVELL-------QKIEGMTSITISVNQK 249
Query: 529 VSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEK 588
+NV D+ L +A I D I +++ ISP +FFQVN + EK
Sbjct: 250 NTNVIMGDSYEVLWG---------------QAFITDYIGEIKYQISPLSFFQVNPVQTEK 294
Query: 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI 648
LY L ++ADL D ++D+ CG GTI L LA V G+E+ A+ DA +NA+INGI
Sbjct: 295 LYGLALEYADLKGDETVWDLYCGIGTISLFLAQNAKQVYGVEIIPQAIEDARKNAQINGI 354
Query: 649 KNCRFVCAKAEDVMGSLLKDYLNPLREEDEHA 680
+N +F KAE+V+ DY E HA
Sbjct: 355 ENAKFYVGKAEEVLPGYYADYAKAHPGEQAHA 386
>gi|160878319|ref|YP_001557287.1| RNA methyltransferase [Clostridium phytofermentans ISDg]
gi|160426985|gb|ABX40548.1| RNA methyltransferase, TrmA family [Clostridium phytofermentans
ISDg]
Length = 468
Score = 108 bits (271), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 91/361 (25%), Positives = 153/361 (42%), Gaps = 77/361 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
+ +SY QL +K+N + LK++ G+ P +E I+G
Sbjct: 88 IQQLSYEEQLRYKQNKVLNCLKRI---------GGIENP--------------PMEPIVG 124
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGV-TAVEEPVDCPNVSEIACKYASIF 425
YRNK +F VG + +GF G + TA D IAC
Sbjct: 125 MENPYYYRNKAQFPVGKRTDGEVVIGFYAGRTHSIIDTAKCHIGDESTEPLIAC-----I 179
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
+ FL+Q ++ +++ + G R + +R G + E+M+ ++
Sbjct: 180 RNFLKQENISIYDEESHQGLVRHILLRVGFTT------------------KELMICVVIN 221
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLP----LTALVIQDHQGVSNVAPADAPLRL 541
+ ++L K A P+LP +T++ + + +NV + + L
Sbjct: 222 GKELPAS------DKLIKQILA-----CPNLPKDFRVTSICLNKNTKKTNVILGEEIIPL 270
Query: 542 LSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGP 601
I D I ++++ ISP +F+QVN + +KLY L D+ DL
Sbjct: 271 YG---------------PTYITDYIGDIKYQISPLSFYQVNPVQTKKLYELALDYTDLTG 315
Query: 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661
+ L++D+ CG GTI L LA + MV G+E+ A+ DA NA++N I N F AE+V
Sbjct: 316 NELVWDLYCGIGTISLFLAQKAKMVYGVEIIPQAIEDAKSNAKLNDINNAEFFVGAAEEV 375
Query: 662 M 662
+
Sbjct: 376 L 376
>gi|153854051|ref|ZP_01995384.1| hypothetical protein DORLON_01375 [Dorea longicatena DSM 13814]
gi|149753433|gb|EDM63364.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dorea longicatena DSM
13814]
Length = 470
Score = 108 bits (271), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 86/338 (25%), Positives = 142/338 (42%), Gaps = 71/338 (21%)
Query: 373 YRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQS 432
YRNK +F +G + GF G ++ E DC E+ + + +F+++
Sbjct: 135 YRNKAQFPIGTDKDGRVIAGFYAGR----THSIIENTDCALGVEVNEEILNCILDFMEEF 190
Query: 433 DLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATF--- 489
+P ++ K+ G R + +R G E+M+ ++ T
Sbjct: 191 KIPAYDEVKHKGLVRHVLLRYG------------------FKTDEIMVCLVINGKTIPHC 232
Query: 490 DDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADG 549
D V G P + T++ + + +NV D +RLL
Sbjct: 233 HDLV--------------GRLRQIPGM--TSITLSTNTAKTNVIMGDT-IRLLW------ 269
Query: 550 EPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVC 609
+ I D I +++ ISP +F+QVN + EKLY L D+A L + ++D+
Sbjct: 270 --------GQEFITDYIGEIKYQISPLSFYQVNPVQTEKLYGLALDYAGLTGNEAVWDLY 321
Query: 610 CGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDY 669
CG GTI L LA + V G+E+ A+ DA NA+IN I N F KAE+V+ K+Y
Sbjct: 322 CGIGTISLFLAKKAKQVYGVEIVPQAIDDAKNNAKINDITNAEFYVGKAEEVLPEYYKEY 381
Query: 670 LNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGC 707
E H E ++ ++ + + P +GC
Sbjct: 382 ------EKTHNGETAHADVIVVD---------PPRKGC 404
>gi|420264205|ref|ZP_14766838.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus sp. C1]
gi|394768581|gb|EJF48487.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus sp. C1]
Length = 455
Score = 108 bits (271), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 97/373 (26%), Positives = 154/373 (41%), Gaps = 75/373 (20%)
Query: 301 RDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCK 360
R + PL+H+SY QL K+ + +L K+ + LPE + + P
Sbjct: 81 RTGIAPLSHLSYDKQLAFKQQQVENVLAKIAK-----------LPEITVNA------PIG 123
Query: 361 LEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
+E P GYRNK + V + + T GF N V + + PN+ + K
Sbjct: 124 ME----KPF--GYRNKAQIPVQ-KIHGELTTGFYRKNSHTLVPIEDFYIQDPNIDQAIIK 176
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
I Q F ++ +N + GF R + VR G G E+M+
Sbjct: 177 VRDILQRF----NVKAYNEEAHEGFLRHIVVRRGHHSG------------------EMMV 214
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSNVAPADAPL 539
+ F E +A+ +P VIQ+ ++ +NV +
Sbjct: 215 VLVTRKPKFFKG------EEIAEVI-------HEEIPEVVSVIQNINEEKTNVIMGEFER 261
Query: 540 RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
L ++ I D + F IS +F+QVNT E LY + A L
Sbjct: 262 VLYG---------------KSSIDDQLLGKTFQISAKSFYQVNTAQTEVLYQTAFEMAQL 306
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659
+ ++ D G GTIG++LA RV V+G+E+ AV+DA NA+ NG++N + KAE
Sbjct: 307 SENDVVVDAYAGIGTIGISLADRVKEVLGMEVIPEAVNDAKANAKRNGVENVHYFIGKAE 366
Query: 660 DVMGSLLKDYLNP 672
+M L++ + P
Sbjct: 367 KIMPQWLREGIQP 379
>gi|365823446|ref|YP_003962414.2| hypothetical protein [Eubacterium limosum KIST612]
gi|358443928|gb|ADO39451.2| hypothetical protein ELI_4517 [Eubacterium limosum KIST612]
Length = 454
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 95/304 (31%), Positives = 131/304 (43%), Gaps = 56/304 (18%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYA 422
GI+ SP V YRNK E+S G ++ P +LG G DC +++ +
Sbjct: 118 GIIPSPEVFEYRNKMEYSFGDDVKDGP---LLLGMHERGSFYNIVKTDCCRLTD---EDF 171
Query: 423 SIFQE----FLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEV 478
+I Q + Q+ D +++ + GF R L +R+GR G+ L VN+
Sbjct: 172 NIIQRAVLGYFQEKDQTYFHKRSHEGFLRHLVIRKGRQTGEIL-----------VNL--- 217
Query: 479 MLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAP 538
V S+ E + F S + ++ + GV++V D
Sbjct: 218 --------------VTTSQSELDSADFTELLLTLELSGEIKGILHTINDGVADVVKKDDL 263
Query: 539 LRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWAD 598
L E IHD I L F IS +FFQ NTL AEKL S+ D+
Sbjct: 264 HILYG---------------EDCIHDKILGLEFEISTFSFFQTNTLGAEKLDSVVRDYVG 308
Query: 599 LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658
D +FD+ CGTGTI LA VIGIE+ AV A NAE NG+ NC F+ A
Sbjct: 309 DRQDKTIFDLYCGTGTIAQVLAPVAKKVIGIELIEEAVEAAKINAEANGLHNCAFI---A 365
Query: 659 EDVM 662
DVM
Sbjct: 366 GDVM 369
>gi|325264644|ref|ZP_08131374.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. D5]
gi|324030306|gb|EGB91591.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. D5]
Length = 567
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 111/488 (22%), Positives = 191/488 (39%), Gaps = 111/488 (22%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
+ +SY QLE K+N + L+++ G PE + + E I+G
Sbjct: 82 IQELSYEKQLEFKENKVKGNLERI----------GGFAPELLERVTE---------PIVG 122
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
+ YRNK +F G + P GF G + + + + P +I +
Sbjct: 123 MEVPFYYRNKAQFPFGTDKEGNPVTGFYAGRTHDIIANTDCALGVPVNKQIL----ELIL 178
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
F+++ + ++ G R +R G E+M+ ++
Sbjct: 179 AFMKKYGITAYDEKTGRGLIRHALIRFG------------------FVTKEIMVCLVING 220
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLP-LTALVIQDHQGVSNVAPADAPLRLLSIP 545
T + A +P +T++ ++ +NV D
Sbjct: 221 KTIPHS--------------AELIEELKEIPGMTSITTSVNRKKTNVIMGD--------- 257
Query: 546 KADGEPEESNDVV--EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDT 603
S D++ + I D I +++ ISP +F+QVN + EKLY L ++A L +
Sbjct: 258 --------SYDILWGQGFITDYIGGIKYQISPLSFYQVNPVQTEKLYGLALEYAGLKGNE 309
Query: 604 LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMG 663
++D+ CG GTI L LA + V G+E+ A+ DA NAEINGI N F +AEDV+
Sbjct: 310 TVWDLYCGIGTISLFLAQKAKQVYGVEIVPQAIEDARNNAEINGIGNAEFYTGRAEDVLP 369
Query: 664 SLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCPE 723
++Y EH E ++ ++ + + P +GC +S
Sbjct: 370 EYYREYAM------EHPGEKAHADVIVVD---------PPRKGCE---------ESLLKT 405
Query: 724 GSGKEPQSQLQKDCTSEGNSLAQPFKNV---------VAIVDPPRGGLHPTVIKILRTHA 774
+ EP + C S +LA+ K + V VD G+H + +L +H
Sbjct: 406 MAEMEPDRIVYVSCDSA--TLARDLKYLSGEGYELVRVRAVDQFPMGVHVETV-VLLSHK 462
Query: 775 RLQRLLHI 782
+ +HI
Sbjct: 463 KADSYIHI 470
>gi|163813943|ref|ZP_02205337.1| hypothetical protein COPEUT_00096 [Coprococcus eutactus ATCC 27759]
gi|158450813|gb|EDP27808.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Coprococcus eutactus
ATCC 27759]
Length = 457
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/307 (28%), Positives = 136/307 (44%), Gaps = 47/307 (15%)
Query: 358 PCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTA-VEEPVDCPNVSE 416
P + +GIL SP+ GYRNK EFS G + P LG ++ T + + DC V++
Sbjct: 113 PYEWQGILASPVTQGYRNKMEFSFGDEYKDGP---LALGLHKKNSTYDIVQMDDCYIVND 169
Query: 417 IACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNIS 476
K EF + + LP + + +++G R L +R + G
Sbjct: 170 DLNKIVKYTVEFCRAAGLPYYKKMQHTGLLRHLVIRRSATNGD----------------- 212
Query: 477 EVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPAD 536
+L+ V+S DA+ F R LPL I N + AD
Sbjct: 213 --LLVNLVTSTQNLDALDLDAFVR-----------GLLDLPLEG-KIAGILHTENDSMAD 258
Query: 537 APLRLLSIPKADGEPEESNDVVEAR-IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGD 595
A + + +N + I++++ L+F ISP +FFQ NT +AE+LY
Sbjct: 259 AVI-----------SDRTNLLYGTEYIYETVLGLQFKISPFSFFQTNTKSAERLYDKARS 307
Query: 596 WADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVC 655
+ D ++FD+ GTGTI LA VIG+E+ AV+ A NA++NG+ NC F+
Sbjct: 308 YVGDTKDAVIFDLYSGTGTIAQLLAPVAKKVIGVEIVEEAVAAARVNAKLNGLDNCEFIA 367
Query: 656 AKAEDVM 662
V+
Sbjct: 368 GDVLKVI 374
>gi|166030479|ref|ZP_02233308.1| hypothetical protein DORFOR_00140 [Dorea formicigenerans ATCC
27755]
gi|166029731|gb|EDR48488.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dorea formicigenerans
ATCC 27755]
Length = 467
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/359 (24%), Positives = 147/359 (40%), Gaps = 70/359 (19%)
Query: 354 IGGLPCKLEGILGSPLVN-----GYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEP 408
IG +P +L + P+V YRNK +F +G + GF G ++
Sbjct: 108 IGEVPTELLDKVMQPIVGMEEPFHYRNKAQFPIGTDKEGHIITGFYAGRTH----SIIPN 163
Query: 409 VDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEV 468
DC + K I F++ + + ++ K+ G R + +R G
Sbjct: 164 TDCALGVAVNQKILEIILHFMENNHISAYDEEKHKGLVRHVLIRYG-------------- 209
Query: 469 NISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQG 528
E+M+ ++ A E+L + +T++ I ++
Sbjct: 210 ----FKTDEIMVCLVINGEKLPHA------EKLVDKLCEISG-------MTSITISVNKA 252
Query: 529 VSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEK 588
+NV L + I D I N+++ ISP +F+QVN + EK
Sbjct: 253 KTNVIMGKEIKLLWG---------------QTYITDYIGNVKYQISPLSFYQVNPVQTEK 297
Query: 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI 648
LY L D+ADL + ++D+ CG GTI L LA V G+E+ A+ DA NA+IN I
Sbjct: 298 LYGLALDYADLNGNETVWDLYCGIGTISLFLAQNAKQVYGVEIVPQAIDDARNNAKINDI 357
Query: 649 KNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGC 707
N F KAE+V+ ++Y ++ H E ++ ++ + + P +GC
Sbjct: 358 TNAEFYVGKAEEVLPGYYREY------QESHGGETAHADVIVVD---------PPRKGC 401
>gi|401681596|ref|ZP_10813494.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
AS14]
gi|400185982|gb|EJO20201.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
AS14]
Length = 457
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 106/412 (25%), Positives = 167/412 (40%), Gaps = 77/412 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDG----SGLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGEL + G G E L + R + L H++YS QL
Sbjct: 33 ENALPGELIRMRVLKVNKKIGFGKVEEFLRTSDQRNENLDMAYLRTGIADLGHLNYSAQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K+ + L K+ + P + + + PL GYRNK
Sbjct: 93 DFKRKQVKDSLYKIAGLSDVEVPPTLGMEQ---------------------PL--GYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + + + + P + ++ ++ L++ DL
Sbjct: 130 AQVPVR-RVNGQLETGFFRKNSHDLLQIEDFYIQDPVIDQVIL----FTRDLLRRFDLKP 184
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
++ + +G R L VR G G E+M+I + V
Sbjct: 185 YDEQEKTGLIRNLVVRRGHYSG------------------EIMVILVTTRPKI--FRVEQ 224
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESND 556
ERL +AF P ++Q+ N P +A I D D
Sbjct: 225 LMERLTEAF-----------PAIKSIMQN----INDQPGNA------IFGKDWRTLYGQD 263
Query: 557 VVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIG 616
I D + F I+ AF+QVNT AEKLY D+++L D ++ D G GTIG
Sbjct: 264 Y----ITDQMLGNDFQIAAPAFYQVNTEMAEKLYQTAIDFSELTSDDVVLDAYSGIGTIG 319
Query: 617 LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
L++A V V G+E+ AV ++ +NA INGI N +VCA AE+ + + LK+
Sbjct: 320 LSVAKHVKQVYGVEVIPEAVENSRKNAAINGITNASYVCAPAEEAIQNWLKE 371
>gi|325570600|ref|ZP_08146326.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus casseliflavus
ATCC 12755]
gi|325156446|gb|EGC68626.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus casseliflavus
ATCC 12755]
Length = 465
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 97/373 (26%), Positives = 153/373 (41%), Gaps = 75/373 (20%)
Query: 301 RDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCK 360
R + PL+H+SY QL K+ + +L K+ + LPE + + P
Sbjct: 91 RTGIAPLSHLSYDKQLAFKQQQVENVLAKIAK-----------LPEITVNA------PIG 133
Query: 361 LEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
+E P GYRNK + V + + T GF N V + + PN+ + K
Sbjct: 134 ME----KPF--GYRNKAQIPVQ-KIHGELTTGFYRKNSHTLVPIEDFYIQDPNIDQAIIK 186
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
I Q F ++ +N + GF R + VR G G E+M+
Sbjct: 187 VRDILQRF----NVKAYNEEAHEGFLRHIVVRRGHHSG------------------EMMV 224
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSNVAPADAPL 539
+ F E +A+ +P VIQ+ ++ +NV +
Sbjct: 225 VLVTRKPKFFKG------EEIAEVI-------HEEIPEVVSVIQNINEEKTNVIMGEFER 271
Query: 540 RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
L ++ I D + F IS +F+QVNT E LY A L
Sbjct: 272 VLYG---------------KSSIDDQLLGKTFQISAKSFYQVNTAQTEVLYQTAFKMAHL 316
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659
+ ++ D G GTIG++LA RV V+G+E+ AV+DA NA+ NG++N + KAE
Sbjct: 317 SENDVVVDAYAGIGTIGISLADRVKEVLGMEVIPEAVNDAKANAKRNGVENVHYFIGKAE 376
Query: 660 DVMGSLLKDYLNP 672
+M L++ + P
Sbjct: 377 KIMPQWLREGIQP 389
>gi|160893502|ref|ZP_02074287.1| hypothetical protein CLOL250_01053 [Clostridium sp. L2-50]
gi|156864897|gb|EDO58328.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. L2-50]
Length = 483
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 100/401 (24%), Positives = 163/401 (40%), Gaps = 91/401 (22%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H+SY QLE+K N + + L+++ + + P+ +M E I G
Sbjct: 110 LQHISYEKQLEYKWNKVRECLRRIGK---------IENPDTLM------------EPIYG 148
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
YRNK +F VG +GF G ++ + C +E+ + I +
Sbjct: 149 MKEPYHYRNKAQFPVGRDKNGNIVIGFYAGRTH----SIIDSDTCAIGAEVNDQILPIIR 204
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
FL + ++ +N G R + R G + G EVM+ V+
Sbjct: 205 AFLTEYNISTYNETTGQGLVRHILTRVGFTTG------------------EVMVCLIVNG 246
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
A + RL K +G T+ L I + + P L
Sbjct: 247 KKLPHA--DELISRLTKI--SGMTS-------ICLNINTEKTNKILGPTCKTLW------ 289
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
G P I D I N+++ ISP +F+QVN + + LY ++ADL + ++
Sbjct: 290 --GSP---------YITDYIGNVKYRISPLSFYQVNPVQTKVLYEKALEYADLNGEETVW 338
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
D+ CG GTI L LA + V G+E+ A+ DA +NAE+N I N F KAE+V+ ++
Sbjct: 339 DMYCGIGTISLFLAQKAKQVYGVEIVPQAILDARKNAELNDIHNVEFFTGKAEEVVPAIY 398
Query: 667 KDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGC 707
E +GS+ ++ + + P +GC
Sbjct: 399 -----------EKGGDGSHADVVVVD---------PPRKGC 419
>gi|225571369|ref|ZP_03780365.1| hypothetical protein CLOHYLEM_07467 [Clostridium hylemonae DSM
15053]
gi|225159845|gb|EEG72464.1| hypothetical protein CLOHYLEM_07467 [Clostridium hylemonae DSM
15053]
Length = 475
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 103/412 (25%), Positives = 168/412 (40%), Gaps = 85/412 (20%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLKVKSARDVV-----TPLAHMSYSVQ 315
+ AV G++ EA + G +A D S +V DV + MSY+ Q
Sbjct: 36 KDAVIGDVVEAKVTKAKKNYGYARLVNIA-DESEFRVTPRCDVARQCGGCQIQAMSYARQ 94
Query: 316 LEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL-----EGILGSPLV 370
LE+K + L +L GG+P +L E + G
Sbjct: 95 LEYKNEKVRNNLIRL------------------------GGVPQELLDEVMEPVCGMEEP 130
Query: 371 NGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQ 430
YRNK +F VG + GF G + + ++ + EI +I F++
Sbjct: 131 YRYRNKAQFPVGTDREGNIITGFYAGRTHQIIPHMDCAIGRAENKEIL----NIIISFMK 186
Query: 431 QSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFD 490
+ L ++ + G R + +R G G E+M+ ++
Sbjct: 187 EFGLSPYDETSHKGLIRHILIRTGYRTG------------------EIMVCIVINGNGIP 228
Query: 491 DAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGE 550
++ ERLA+ + S + T +++ G+ L
Sbjct: 229 HG--DTLAERLAEIPGMTSVTYSVNREKTNVIMGREAGL-----------LWG------- 268
Query: 551 PEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCC 610
+A I D I ++++ ISP +F+QVN + E+LY ++A L D ++D+ C
Sbjct: 269 --------QAYITDYIGDIKYQISPLSFYQVNPVQTERLYETALEYAGLHGDETVWDLYC 320
Query: 611 GTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
G GTI L LA + V G+E+ A+ DA +NA+INGI+N RF KAEDV+
Sbjct: 321 GIGTISLFLAQKAKHVYGVEIVPQAIEDAKKNAQINGIENARFYVGKAEDVL 372
>gi|210623379|ref|ZP_03293776.1| hypothetical protein CLOHIR_01726 [Clostridium hiranonis DSM 13275]
gi|210153640|gb|EEA84646.1| hypothetical protein CLOHIR_01726 [Clostridium hiranonis DSM 13275]
Length = 458
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 139/307 (45%), Gaps = 53/307 (17%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVD-CPNVSEIACKY 421
G+ GSP GYRNK E++ G ++ P LG ++G + VD C V +
Sbjct: 114 GVQGSPDNVGYRNKMEYTFGDEVKGGP---LTLGLHKKGRHIDIQTVDGCMLVDS---DF 167
Query: 422 ASIFQE---FLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEV 478
+I +E F Q ++LP + + G+ R L VR+G ++ E+
Sbjct: 168 NTILKESLAFFQDAELPYYRVVNHEGYLRNLVVRKG------------------IHTDEI 209
Query: 479 MLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAP 538
M+ + V +S+ E FA + +++ + G+++ D
Sbjct: 210 MV----------NIVTSSQCEFDMSKFADMINGLELKGNVVSILHTINDGLADAVQCDEM 259
Query: 539 LRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWAD 598
L + +H+ I L+F ISP +FFQ NT AE+LY++ D+
Sbjct: 260 RILYGVD---------------YLHEEILGLKFKISPFSFFQTNTKGAEQLYTIARDFIG 304
Query: 599 LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658
+ ++FD+ GTG+IG +A + V GIE+ AV A+ NA++NG+ NC F+
Sbjct: 305 DHSNKVVFDLYSGTGSIGQLMAEKAKKVYGIEIIEEAVVAANENAKLNGLDNCEFIAGDV 364
Query: 659 EDVMGSL 665
+D + SL
Sbjct: 365 KDTVKSL 371
>gi|153809759|ref|ZP_01962427.1| hypothetical protein RUMOBE_00140 [Ruminococcus obeum ATCC 29174]
gi|149833937|gb|EDM89017.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus obeum
ATCC 29174]
Length = 462
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 92/359 (25%), Positives = 157/359 (43%), Gaps = 65/359 (18%)
Query: 310 MSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPL 369
MSY QL K+ I ++L++ + NG + EW EGI GSP+
Sbjct: 86 MSYEDQLHMKEIQIRELLEEALVQGGQIDENGNAAFEW--------------EGIHGSPI 131
Query: 370 VNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTA-VEEPVDCPNVSEIACKYASIFQEF 428
GYRNK EFS G ++ P LG ++G T + DC V + + +EF
Sbjct: 132 EFGYRNKMEFSFGDEVKDGP---LSLGLHKKGSTYDILNTDDCKLVHKDMTDILTCVREF 188
Query: 429 LQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSAT 488
++ + + +++G+ R L +R G + G+ ++ + + T
Sbjct: 189 FREKGASYYRKLQHTGYLRHLMLRRGVTSGE--------------------ILVHLVTTT 228
Query: 489 FDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKAD 548
++ + E L A LPL ++ + +L+ +D
Sbjct: 229 QEE----YDLEPLKDQLLA--------LPLEGRIV-------------GIMHILNDSLSD 263
Query: 549 GEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
+ ++ + ++++ L+F IS +FFQ N+LAAE LY++ D+ +F
Sbjct: 264 VVQSDETRILYGQDYFYETLLGLKFRISTFSFFQPNSLAAEVLYNIVRDYIQNTSGMEVF 323
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
D+ GTGTI LA VIG+E+ AV+ A NA++NG+ NC+F+ V+ L
Sbjct: 324 DLYSGTGTIAQLLAPVAKEVIGVEIVEDAVAAARENAKLNGLDNCKFIAGDVLKVLDDL 382
>gi|365851865|ref|ZP_09392280.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
parafarraginis F0439]
gi|363715806|gb|EHL99229.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
parafarraginis F0439]
Length = 390
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/111 (48%), Positives = 69/111 (62%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I D + L F ISP +F+QVN EKLY L + A+L D ++ D CG GTI L+LA
Sbjct: 268 ITDQLMGLDFEISPNSFYQVNPTQTEKLYQLAIEKAELSKDDVVIDAYCGIGTISLSLAK 327
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
V V G+E+ A+ DA RNA IN IKNC+FV AKAED + +D L+P
Sbjct: 328 VVRKVYGVEIVPEAIEDAKRNARINHIKNCKFVTAKAEDQLAKWQQDGLDP 378
>gi|187932429|ref|YP_001884796.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
B str. Eklund 17B]
gi|187720582|gb|ACD21803.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
B str. Eklund 17B]
Length = 450
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/308 (27%), Positives = 138/308 (44%), Gaps = 55/308 (17%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQA-KPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKY 421
G+LGS YRNK EF+ G + ++G + G+ V+ C V E +
Sbjct: 114 GVLGSSEQWEYRNKMEFTFGDEEKGGDLSIGMHMRGKSFGIMTVDH---CKIVDEDYRRI 170
Query: 422 ASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLI 481
+ ++ + DLP + K G+ R L +R+ ++ G+ +L+
Sbjct: 171 IRLTADYFGKQDLPYYRVMKREGYLRHLVIRKAQNTGE-------------------ILV 211
Query: 482 AQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQG--VSNVAPADAPL 539
V++ D + SE+ L K+ QD++G VS + +
Sbjct: 212 NLVTTTQIDFDL--SEYVELLKS-------------------QDYKGTLVSILHTENNSF 250
Query: 540 RLLSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWA 597
IP E +V+ R I + + L F ISP +FFQ NT AE LYSL D+
Sbjct: 251 SDAVIP-------EKVNVLYGRDYIQEKLLGLDFKISPFSFFQTNTKGAESLYSLVRDFM 303
Query: 598 DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAK 657
+ ++FD+ CGTGTIG +A V+GIE+ AV A NA++NG+ NC F+
Sbjct: 304 GSSENKVVFDLYCGTGTIGQIVAPNAKKVVGIELIEEAVEAAKENAKLNGLNNCEFLAGD 363
Query: 658 AEDVMGSL 665
+++ ++
Sbjct: 364 VAEIIKTV 371
>gi|317132473|ref|YP_004091787.1| RNA methyltransferase, TrmA family [Ethanoligenens harbinense
YUAN-3]
gi|315470452|gb|ADU27056.1| RNA methyltransferase, TrmA family [Ethanoligenens harbinense
YUAN-3]
Length = 453
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 94/320 (29%), Positives = 142/320 (44%), Gaps = 48/320 (15%)
Query: 353 EIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCP 412
I L + E I+G YRNK ++ VG+ +P GF V+A EE + P
Sbjct: 106 RIAKLEIEPEPIVGCEQTLAYRNKAQYPVGWR-DGRPVFGFYAPRSHRIVSA-EECLLQP 163
Query: 413 NVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISE 472
+V + F+ ++ ++D+ ++ G R + +R+ S G
Sbjct: 164 SVFK---NVLGAFERWMLENDVSTYDEQTGKGVLRHVFLRQAPSTG-------------- 206
Query: 473 VNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNV 532
E+M+ A VVN RL + ++V+ + +NV
Sbjct: 207 ----ELMICA----------VVNGGAGRLPNREQLIRYCLDAAPQTKSIVLNRNTAHTNV 252
Query: 533 APADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSL 592
D L AD RI D + LRF +SP +F+QVN+ AE+LY
Sbjct: 253 ILGDTCETLWG---AD------------RITDVLCGLRFSLSPLSFYQVNSRQAERLYHA 297
Query: 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCR 652
++ADL +L D+ CG GTIGL++A VG +IG+E+ AV+DA RNA NGI+N
Sbjct: 298 AAEFADLRKTDVLLDLYCGVGTIGLSMAGAVGRLIGVEVVPDAVADAKRNAAGNGIENAD 357
Query: 653 FVCAKAEDVMGSLLKDYLNP 672
F CA A + L + L P
Sbjct: 358 FFCADAGEATVRLQQQGLAP 377
>gi|295397194|ref|ZP_06807297.1| 23S rRNA (uracil-5-)-methyltransferase [Aerococcus viridans ATCC
11563]
gi|294974583|gb|EFG50307.1| 23S rRNA (uracil-5-)-methyltransferase [Aerococcus viridans ATCC
11563]
Length = 464
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 105/413 (25%), Positives = 164/413 (39%), Gaps = 80/413 (19%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDG---SGLKVKSARDVVT-PLAHMSYSVQL 316
E+A+PGE+ A S G + G G D G+ K + V T PL HM+Y QL
Sbjct: 44 ENALPGEVGTIKAISVGEKFGYGKMMQRTVDSPDRVGIVDKVSSQVGTMPLQHMTYEAQL 103
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K+ + + + + RE+ LP +GS YRNK
Sbjct: 104 AFKQKQVENAFSRFG----------------LAEGREV--LPT-----VGSEDTFKYRNK 140
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ +G + + GF N E + + + P + E IF Q L
Sbjct: 141 AQIPIGADDEGQLYSGFYRKNSHEIIPVEDFKIQLPGIDEAIASIVDIFN----QHGLKG 196
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATF--DDAVV 494
++ K+SG R + +R+G +++M+I ++ ++ +V
Sbjct: 197 YDEGKHSGLIRNIVIRKGYYT------------------NQMMVIIVINGKDLPEENQIV 238
Query: 495 NSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEES 554
E+L + + ++V+ + +N + L + K +
Sbjct: 239 TEIVEKLPE--------------VVSIVLSSNTKQTNFVMSGKQRVLYGVDKYE------ 278
Query: 555 NDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGT 614
D + + F IS +FFQ+NT AEKLY L D ADL + + D CG GT
Sbjct: 279 ---------DKMFDFTFDISSRSFFQINTPQAEKLYQLAIDAADLTGEETVVDAYCGIGT 329
Query: 615 IGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLK 667
I L LA + V G+E+ AV A NA N I N F +AE VMG +K
Sbjct: 330 ITLALAKKAKHVYGVEVVGDAVKMAKNNAAKNYINNVHFETGQAETVMGEWVK 382
>gi|406837752|ref|ZP_11097346.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus vini DSM 20605]
Length = 457
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 105/416 (25%), Positives = 160/416 (38%), Gaps = 78/416 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDG----SGLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGE AH G D + K+ + + PL H++Y QL
Sbjct: 37 ENALPGEKILAHVLKVSKNYGFAKVVERYNDSPERQANSKLAYLQTGIAPLQHLTYQAQL 96
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K+N + ++L K+ + P +G + PL YRNK
Sbjct: 97 QFKQNQLRELLHKVHLDQIAVAPT-------------VG---------MAEPL--HYRNK 132
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF + V + + P + +I I +EF ++P
Sbjct: 133 AQIPVR-MVNGQLETGFFKQRSHQFVVLHDFLIQDPRIDQILMVVRDILREF----EIPA 187
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
+N +SG R + +R G G EVM+I V S
Sbjct: 188 YNEPAHSGILRHIVIRRGHYSG------------------EVMVIL----------VTRS 219
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESND 556
A A P V+ +Q N+ PA + L K E+
Sbjct: 220 RKLPAANQIAQEIIEHCPD------VVSVYQ---NINPARTNVILGKTEKLLAGKEQ--- 267
Query: 557 VVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIG 616
I D ++ + F ISP +FFQVN+L EK+Y + A L + D CG GTI
Sbjct: 268 -----ITDQLNGINFAISPQSFFQVNSLQTEKIYQFAIEAAHLTGQETVIDAYCGIGTIS 322
Query: 617 LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
L LA + V+G+E+ A++DA +NA +N IKN F A + M L P
Sbjct: 323 LNLALQAKRVLGVEIVPEAIADAKKNAALNRIKNVEFQVGSAVEWMKKWADQDLKP 378
>gi|422876112|ref|ZP_16922582.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK1056]
gi|332362548|gb|EGJ40348.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK1056]
Length = 465
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 106/412 (25%), Positives = 167/412 (40%), Gaps = 77/412 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDG----SGLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGEL + G G E L + R + L H++YS QL
Sbjct: 46 ENALPGELIRMRVLKVNKKIGFGKVEEFLRTSDQRNENLDMAYLRTGIADLGHLNYSAQL 105
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K+ + L K+ + P + + + PL GYRNK
Sbjct: 106 DFKRKQVKDSLYKIAGLSDVEVPPTLGMEQ---------------------PL--GYRNK 142
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + + + + P + ++ ++ L++ DL
Sbjct: 143 AQVPVR-RVNGQLETGFFRKNSHDLLPIEDFYIQDPVIDQVIL----FTRDLLRRFDLKP 197
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
++ + +G R L VR G G E+MLI + V
Sbjct: 198 YDEQEKTGLIRNLVVRRGHYSG------------------EIMLILVTTRPKI--FRVEQ 237
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESND 556
E L +AF P ++Q+ N P +A I D D
Sbjct: 238 LMEHLTEAF-----------PAIKSIMQN----INDQPGNA------IFGKDWRTLYGQD 276
Query: 557 VVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIG 616
I D + F I+ AF+QVNT AEKLY D+++L D ++ D G GTIG
Sbjct: 277 Y----ITDQMLGHDFQIAAPAFYQVNTEMAEKLYQTAIDFSELTSDDVVLDAYSGIGTIG 332
Query: 617 LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
L++A +V V G+E+ AV ++ +NA INGI N +VCA AE+ + + LK+
Sbjct: 333 LSVAKQVKQVYGVEVIPEAVKNSRKNAAINGITNASYVCAPAEEAIQNWLKE 384
>gi|379013332|ref|YP_005271144.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acetobacterium woodii
DSM 1030]
gi|375304121|gb|AFA50255.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acetobacterium woodii
DSM 1030]
Length = 450
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/303 (30%), Positives = 133/303 (43%), Gaps = 52/303 (17%)
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKY 421
EG++ SP V GYRNK E+S G + + P MLG +G D +++
Sbjct: 112 EGMVASPEVFGYRNKMEYSFGDNEKDGP---LMLGLHEQGSFYNIVQTDHCQITDADFNQ 168
Query: 422 A--SIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVM 479
++ F+Q D R + GF R L VR+G+ G L +N+
Sbjct: 169 IQKAVLAYFVQTGDCYFHKR-SHEGFLRHLVVRKGKYTGDVL-----------INL---- 212
Query: 480 LIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL 539
A + T D+A AF A + ++ + GV++V A+
Sbjct: 213 --ATTTQGTLDEA-----------AFVKKLLALELEGQIRGILHTQNDGVADVVKAEISK 259
Query: 540 RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
L E +I D I L F I+ +FFQ NTL AEKLYS+ D+
Sbjct: 260 TLYG---------------EDKIEDQILGLSFEITSFSFFQTNTLGAEKLYSVVRDFVGQ 304
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659
+ +++D+ CGTGTI LA V+GIE+ AV A NA NG+ NC+F+ A
Sbjct: 305 EQNEVIYDLYCGTGTIAQVLAPVAQKVVGIELVPEAVEAAKVNAAKNGLDNCQFI---AG 361
Query: 660 DVM 662
DVM
Sbjct: 362 DVM 364
>gi|376262823|ref|YP_005149543.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp.
BNL1100]
gi|373946817|gb|AEY67738.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp.
BNL1100]
Length = 460
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/365 (25%), Positives = 156/365 (42%), Gaps = 85/365 (23%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLP-CKLEGIL 365
+ HMSY QL+ KK+++ Q + R IGGL + +
Sbjct: 90 VQHMSYQAQLDFKKDTVLQNI------------------------RRIGGLQDVTVNNTI 125
Query: 366 GSPLVNGYRNKCEFSVGYSLQAKPTVGFMLG---NFREGVTAVEEPVDCPNVSEIACKYA 422
G YRNK ++ VG S + +GF N +G +P + + ++
Sbjct: 126 GMENPYKYRNKVQYPVG-SNNGEIRIGFYETRSHNIIDGNLCDIQPDESNEIRDVV---- 180
Query: 423 SIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIA 482
+ F + + + +++ G R + VR+G G E+M++
Sbjct: 181 ---RNFCKDAGIAIYDEKTGKGLLRHVMVRKGFKTG------------------EIMVVL 219
Query: 483 QVSSATFDDAVVNSE--FERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
V+ D +V S+ ++L K F + ++++ + +N+ D +
Sbjct: 220 VVNG----DILVKSDELVKKLLKGFP----------DIKSIILNVNTRNTNIILGDKNIC 265
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
+ + I D I + RF ISP +FFQVN + E LY ++A L
Sbjct: 266 IYG---------------QKYITDFIGSFRFEISPLSFFQVNPIQTEVLYEKALEYAGLS 310
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
+ +FD+ CG GTI L L+ + V+G+E+ A A+SDA RNAEIN + N F+ +AE
Sbjct: 311 GNETVFDLYCGIGTISLFLSQKAKRVVGVEVVADAISDAKRNAEINDVSNVEFLVGEAEK 370
Query: 661 VMGSL 665
V+ L
Sbjct: 371 VIPEL 375
>gi|295109231|emb|CBL23184.1| 23S rRNA m(5)U-1939 methyltransferase [Ruminococcus obeum A2-162]
Length = 462
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 93/359 (25%), Positives = 155/359 (43%), Gaps = 65/359 (18%)
Query: 310 MSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPL 369
MSY QL K+ I ++L+ + NG++ EW EGI GSP+
Sbjct: 86 MSYENQLAMKETQIRELLEDALVQGGQVDENGLADFEW--------------EGIHGSPI 131
Query: 370 VNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTA-VEEPVDCPNVSEIACKYASIFQEF 428
GYRNK EFS G + P LG ++G T + DC V + +EF
Sbjct: 132 EFGYRNKMEFSFGDEYKDGP---LSLGLHKKGSTYDILNTDDCKLVHKDMTDILICVREF 188
Query: 429 LQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSAT 488
++ + + +++G+ R L +R G + G+ ++ + + T
Sbjct: 189 FREKGASYYRKLQHTGYLRHLMLRRGVTSGE--------------------ILVHLVTTT 228
Query: 489 FDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKAD 548
++ + E L + A LPL ++ + +L+ +D
Sbjct: 229 QEE----YDLEPLKEQLLA--------LPLEGKIV-------------GIMHILNDSLSD 263
Query: 549 GEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
+ ++ + ++++ L+F IS +FFQ N+LAAE LY++ ++ +F
Sbjct: 264 VVQSDETRILYGQDYFYETLLGLKFRISTFSFFQPNSLAAEVLYNIVREYIQNTSGMEVF 323
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
D+ GTGTI LA VIGIE+ AV A NA++NG+ NCRF+ V+ L
Sbjct: 324 DLYSGTGTIAQLLAPVAKEVIGIEIIEDAVKAARENAKLNGLDNCRFIAGDVLKVLDDL 382
>gi|429762233|ref|ZP_19294633.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerostipes hadrus
DSM 3319]
gi|429182047|gb|EKY23172.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerostipes hadrus
DSM 3319]
Length = 457
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 94/383 (24%), Positives = 163/383 (42%), Gaps = 91/383 (23%)
Query: 297 VKSARDVVTP------------LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSL 344
+++++D V+P L H++Y QLE+K N + L++
Sbjct: 62 IEASKDRVSPRCSKARQCGGCTLQHLAYEKQLEYKFNKVKNCLER--------------- 106
Query: 345 PEWIMKSREIGGLPC---KLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREG 401
IGGL K+E ILG YRNK +F VGY + GF G
Sbjct: 107 ---------IGGLENIEEKMEPILGMEEPFYYRNKAQFPVGYDKEGNLITGFYAGRTHHI 157
Query: 402 VTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPL 461
+ + P +I K ++++++++ ++ + G R + R G G+ +
Sbjct: 158 IDCTHCMIQHPVNEQILLK----VLDYMKKNNITAYDEKTHKGLVRHIVTRVGFKTGEIM 213
Query: 462 DVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTAL 521
L VN S+ N+ + ++ D++ E +T++
Sbjct: 214 VC--LVVNGSKKNLRNLEMLV--------DSLTEVE-------------------GMTSI 244
Query: 522 VIQDHQGVSNVAPADAPLRLL--SIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFF 579
+ ++ +N R+L + G+P I+D I N+++ I P +FF
Sbjct: 245 CVNINKEKTN--------RILGSKTEEVYGKP---------YIYDYIGNVKYQIGPLSFF 287
Query: 580 QVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDA 639
QVN + LY ++ADL + ++D+ CG GTI L LA + V G+E+ A+ DA
Sbjct: 288 QVNPTQTKVLYEKAMEYADLKGEETVWDLYCGIGTISLFLAQKAKKVYGVEIVKEAIDDA 347
Query: 640 HRNAEINGIKNCRFVCAKAEDVM 662
NA++NG N F KAE+V+
Sbjct: 348 RLNAKMNGFDNAEFFVGKAEEVL 370
>gi|427405677|ref|ZP_18895882.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sp. F0473]
gi|425708518|gb|EKU71557.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sp. F0473]
Length = 457
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 103/362 (28%), Positives = 145/362 (40%), Gaps = 76/362 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLP-CKLEGIL 365
L H+SY QL K+ + + IG LP + L
Sbjct: 88 LQHLSYEAQLAAKRRQVVDAMT------------------------HIGKLPHVPVRETL 123
Query: 366 GSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF 425
G+ YRNK +F VG Q + ++G F +G + + DC E + A+
Sbjct: 124 GAVSPWNYRNKMQFPVGIH-QGR----IVVGCFAQGSHRIIDTDDCHIQREGNNELANAV 178
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
++ + Q +P++N + G R + R G+ D E + V ++
Sbjct: 179 RDIVAQLRIPIYNEDTHRGVLRHIVGRVGK------DDELMAVIVT-------------- 218
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
T + EF R+ +A LP + Q+ Q N LL
Sbjct: 219 --TVKELPRRKEFIRMLRA----------RLPRLVSIQQNIQTYRNNVIMGRDTVLLW-- 264
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
G+P I D++ L F ISP +FFQVNT AE LY +ADL
Sbjct: 265 ---GKPT---------IRDTLGKLSFHISPRSFFQVNTAQAEVLYEQALQYADLHGTETA 312
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
D CGTGTI L LA + V GIE+ A+ DA +NA NGIKN F+ A VM SL
Sbjct: 313 IDAYCGTGTITLFLAQKARKVYGIEIVRPAILDAQKNARDNGIKNAEFIVGDATKVMPSL 372
Query: 666 LK 667
K
Sbjct: 373 YK 374
>gi|160942249|ref|ZP_02089558.1| hypothetical protein CLOBOL_07135 [Clostridium bolteae ATCC
BAA-613]
gi|158434806|gb|EDP12573.1| hypothetical protein CLOBOL_07135 [Clostridium bolteae ATCC
BAA-613]
Length = 477
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 137/312 (43%), Gaps = 49/312 (15%)
Query: 360 KLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFM--LGNFREGVTAVEEPVDCPNVSEI 417
+ +GI SP+ +GYRNK EFS G ++ P M G+F + VT E C V
Sbjct: 124 EFQGIKASPISSGYRNKMEFSFGDEVKDGPLALGMHKRGSFYDIVTTPE----CRIVHPD 179
Query: 418 ACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISE 477
C+ +E+ ++ + + + ++ G+ R L VR G+
Sbjct: 180 FCRILVATKEYFEELGVAFYKKLQHQGYLRHLLVRRAVKTGE------------------ 221
Query: 478 VMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPL----TALVIQDHQGVSNVA 533
+L+ V+S D +E E LA+ T LPL ++ ++ +++V
Sbjct: 222 -ILVDLVTSTQRDYLGERTEEEVLAEW-----TKKLVGLPLDGKLAGILHTENDSLADVV 275
Query: 534 PADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLG 593
+DA L + ++ + LRF ISP +FFQ N+L AE LY
Sbjct: 276 QSDATHILYG---------------QDYFYEELLGLRFRISPFSFFQTNSLGAEVLYDTA 320
Query: 594 GDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRF 653
+ D ++FD+ GTGTI LA V+G+E+ AV A NA +NG++NC F
Sbjct: 321 RGFVGDTKDRVVFDLYSGTGTIAQILAPVAKKVVGVEIVEEAVRSAQVNARLNGLENCEF 380
Query: 654 VCAKAEDVMGSL 665
+ V+ L
Sbjct: 381 LAGDVLKVIDEL 392
>gi|344238064|gb|EGV94167.1| tRNA (uracil-5-)-methyltransferase-like [Cricetulus griseus]
Length = 385
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 101/373 (27%), Positives = 151/373 (40%), Gaps = 90/373 (24%)
Query: 297 VKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGG 356
++ DVVTPL +SY QL+ K + ++++ L +
Sbjct: 9 LRRLADVVTPLWRLSYEEQLKVKFEAQKKIVQTLESYLQ--------------------- 47
Query: 357 LPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVS 415
L G+ G+P+++GYRNK FSV P TVG+ G +R+G N+
Sbjct: 48 ---VLHGVSGTPIIDGYRNKSTFSVNRGPDGNPKTVGYYQGTWRDGNIVCVPCSHLKNIP 104
Query: 416 EIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNI 475
E + A ++ FL+QS + F G WR+LTVR S G + + + +
Sbjct: 105 EKHSQVAQYYEVFLRQSSVEPCLLFHEGGHWRELTVRTN-SQGHTMAI----ITFHPQGL 159
Query: 476 SEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPA 535
S+ L AQ T D F G A LT+L Q+ ++ +
Sbjct: 160 SQEELCAQ--KVTLKD------------FFTQGPGAVC---ELTSLYFQE-STMTRCSHQ 201
Query: 536 DAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGD 595
+P +LL GEP D++ +I ISP AFFQ+NT
Sbjct: 202 QSPYQLLF-----GEPHIFEDLLGLKIR---------ISPDAFFQINT------------ 235
Query: 596 WADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVC 655
G IGL+LA V+G+E+ AV DA A NG+ NC F
Sbjct: 236 ----------------AGVIGLSLAQCASQVLGVELVEQAVDDARWTAAFNGVTNCEFHA 279
Query: 656 AKAEDVMGSLLKD 668
+AE ++ LL+
Sbjct: 280 GRAEKILPQLLRS 292
>gi|300915331|ref|ZP_07132645.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X561]
gi|307724834|ref|YP_003904585.1| TrmA family RNA methyltransferase [Thermoanaerobacter sp. X513]
gi|300888607|gb|EFK83755.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X561]
gi|307581895|gb|ADN55294.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X513]
Length = 453
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 96/361 (26%), Positives = 149/361 (41%), Gaps = 76/361 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
H+SY QL++K + L++ IG + K+ I+G
Sbjct: 85 FQHLSYEGQLKYKTQKVKDNLER------------------------IGKVYTKVHEIIG 120
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVD-CPNVSEIACKYASIF 425
YRNK +F VG L + GF + V P++ C E++ A
Sbjct: 121 MKEPQRYRNKAQFPVG-MLDGEVVTGFYAPRSHDIV-----PIESCMIQDEVSDYIARTI 174
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
+ ++++ ++ V++ G R + R G G EVM+I V+
Sbjct: 175 RNWIKKYNVSVYDEKAGKGLIRHIVTRVGFKTG------------------EVMVILVVN 216
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
E+L A L ++V+ + +NV + + +
Sbjct: 217 GKHIPYK------EQLIDALKKEING------LKSVVLNINTKRTNVIMGEDNITIYG-- 262
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
S++++ D I +++F ISP +FFQVN + E LY ++ADL D +
Sbjct: 263 --------SDNII-----DYIKDIKFEISPLSFFQVNPVQTEVLYGKALEYADLKGDETV 309
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
DV CG GTI L A + V GIE AV DA RNA INGIKN F+ +AE VM L
Sbjct: 310 IDVYCGIGTISLFAAQKAFFVYGIEAVHQAVEDAKRNAYINGIKNVEFISGQAEKVMPEL 369
Query: 666 L 666
+
Sbjct: 370 V 370
>gi|195977835|ref|YP_002123079.1| 23S rRNA-methyltransferase [Streptococcus equi subsp. zooepidemicus
MGCS10565]
gi|195974540|gb|ACG62066.1| 23S rRNA-methyltransferase [Streptococcus equi subsp. zooepidemicus
MGCS10565]
Length = 453
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 103/416 (24%), Positives = 165/416 (39%), Gaps = 77/416 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDG----SGLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGE+ + G G E L V R + L H+ Y QL
Sbjct: 33 ENALPGEIIQMRVLKVNKNSGFGKVETYLTTSPMRQKKLDVTYLRTGIADLGHLLYPQQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K+ + L K+ A + V + E I G YRNK
Sbjct: 93 LFKQKQVQDSLYKI------AGISNVEVKETI-----------------GMEYPYAYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF + E V + + + + + ++ L++ D+
Sbjct: 130 AQVPVR-RVNGQLETGFFRKHSHELVPISDFYIQDKEIDRLI----AFTRDLLRRFDIKP 184
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
++ + SG R L VR G G E+ML+ + +N
Sbjct: 185 YDEKEQSGLIRHLVVRRGHYSG------------------EIMLVLVTTRPKIFR--INQ 224
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESND 556
+RL F A +T+++ + +NV A RL
Sbjct: 225 MIDRLVAEFPA----------ITSILQNINDKPTNVIFGKAFTRLYG------------- 261
Query: 557 VVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIG 616
+ I D+I ++CIS +F+QVNT AEKLY D+++L D ++ D G GTIG
Sbjct: 262 --KETITDTILGNQYCISAQSFYQVNTTMAEKLYQTAIDFSELTADDVVIDAYSGIGTIG 319
Query: 617 LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
L+ A V V G+E+ +AV DA +NA +NGI N +V AE+ M + ++ + P
Sbjct: 320 LSFAKEVKAVYGVEVIEAAVRDAEKNAALNGITNAHYVADSAENAMANWCQEGIKP 375
>gi|417643628|ref|ZP_12293665.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus warneri
VCU121]
gi|330685548|gb|EGG97194.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU121]
Length = 453
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 144/357 (40%), Gaps = 74/357 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPE-WIMKSREIGGLPCKLEGIL 365
L HMSY QL KK + + + + + V + + W
Sbjct: 85 LQHMSYQAQLNMKKEQVVNLFHRKAKFTNTVIKDTVGMEDPW------------------ 126
Query: 366 GSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF 425
YRNK + VG S +P +GF +R+ + + C + + +
Sbjct: 127 ------RYRNKSQIPVGLSKDQQPIMGF----YRQRSHDIIDMESCLIQDQQHQQVMNDL 176
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
++ + + ++ V+N G R L VR G +++M+I
Sbjct: 177 KQLISELNISVYNEKTKKGLLRHLVVRTGHYT------------------NQLMIIL--- 215
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
V N + + A++ P++ I D SNV + L
Sbjct: 216 -------VTNGKAFKQAESLVDALVRKYPNVTSIKQNINDAH--SNVIMGPQSITLY--- 263
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
GE E I D +S + F IS +F+Q+N+ EKLY D+A L D ++
Sbjct: 264 ---GEEE---------IEDQLSEVTFNISDQSFYQINSHQTEKLYQQALDYAQLTGDEIV 311
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
D CG GTI + +A V G+E+ SA++DA++NA N ++N FVC KAE+V+
Sbjct: 312 LDTYCGIGTIAIYMAENARHVYGVEVVPSAINDANQNATKNQLENTTFVCGKAEEVI 368
>gi|167519923|ref|XP_001744301.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777387|gb|EDQ91004.1| predicted protein [Monosiga brevicollis MX1]
Length = 211
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/99 (52%), Positives = 66/99 (66%)
Query: 564 DSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV 623
++++ L F +SP AFFQVN AAE+LY L GDWA L + L D+C GTGTIG A+RV
Sbjct: 3 ETMNGLTFRVSPDAFFQVNIPAAEELYRLVGDWAGLSRECALLDICSGTGTIGQLYANRV 62
Query: 624 GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
VIG E+ SAV DA NAE+NG+ NC + +AE M
Sbjct: 63 RRVIGFELVESAVEDAKHNAELNGLTNCSYFAGRAEKTM 101
>gi|347521614|ref|YP_004779185.1| tRNA methyltransferase [Lactococcus garvieae ATCC 49156]
gi|385833001|ref|YP_005870776.1| tRNA methyltransferase [Lactococcus garvieae Lg2]
gi|343180182|dbj|BAK58521.1| tRNA methyltransferase [Lactococcus garvieae ATCC 49156]
gi|343182154|dbj|BAK60492.1| tRNA methyltransferase [Lactococcus garvieae Lg2]
Length = 462
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 108/417 (25%), Positives = 168/417 (40%), Gaps = 82/417 (19%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDG----SGLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGE + G G G E + + R + HM+Y QL
Sbjct: 47 ENALPGEEIKMKVLKVGKNFGFGKVEEWLSQSPDRVQDVNMTYLRTGIADFGHMTYPAQL 106
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K + +L+K NA K P++ + LG+ + YRNK
Sbjct: 107 HFKHKQVVDVLRK---NAHK--------PDF------------PVLDTLGAEQESQYRNK 143
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V S+ K GF N + V + + P + E+ + +E L + ++P
Sbjct: 144 AQVPVR-SVNGKTETGFFRKNSHDLVPIRDFYIQNPEIDELVNQ----VRESLIKLNIPP 198
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDD-AVVN 495
++ G R + +R G G ++MLI V+ F + +
Sbjct: 199 YDEQTKRGIVRNIVIRRGHHSG------------------QMMLILVVTKEKFAGLSELV 240
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
+E+ +F S+ + A + +LLS
Sbjct: 241 AEYSNKVDSFQLSINTSTGN-----------------AIFGSKFKLLS----------GK 273
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
D I DS+ F IS AF+QVNT AEKLY L D+ADL + ++ D G GTI
Sbjct: 274 DY----ITDSMLGKDFQISARAFYQVNTAQAEKLYQLAYDFADLKAEDVVIDAYSGIGTI 329
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL +A +V V G+E+ AV +A NA +NGI N ++ AE+VM L+D + P
Sbjct: 330 GLGMADKVAQVYGMEIIPEAVENAKTNAALNGITNAQYEVGPAEEVMPQWLQDGIQP 386
>gi|167039842|ref|YP_001662827.1| RNA methyltransferase [Thermoanaerobacter sp. X514]
gi|166854082|gb|ABY92491.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X514]
Length = 454
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 96/361 (26%), Positives = 149/361 (41%), Gaps = 76/361 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
H+SY QL++K + L++ IG + K+ I+G
Sbjct: 86 FQHLSYEGQLKYKTQKVKDNLER------------------------IGKVYTKVHEIIG 121
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVD-CPNVSEIACKYASIF 425
YRNK +F VG L + GF + V P++ C E++ A
Sbjct: 122 MKEPQRYRNKAQFPVG-MLDGEVVTGFYAPRSHDIV-----PIESCMIQDEVSDYIARTI 175
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
+ ++++ ++ V++ G R + R G G EVM+I V+
Sbjct: 176 RNWIKKYNVSVYDEKAGKGLIRHIVTRVGFKTG------------------EVMVILVVN 217
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
E+L A L ++V+ + +NV + + +
Sbjct: 218 GKHIPYK------EQLIDALKKEING------LKSVVLNINTKRTNVIMGEDNITIYG-- 263
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
S++++ D I +++F ISP +FFQVN + E LY ++ADL D +
Sbjct: 264 --------SDNII-----DYIKDIKFEISPLSFFQVNPVQTEVLYGKALEYADLKGDETV 310
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
DV CG GTI L A + V GIE AV DA RNA INGIKN F+ +AE VM L
Sbjct: 311 IDVYCGIGTISLFAAQKAFFVYGIEAVHQAVEDAKRNAYINGIKNVEFISGQAEKVMPEL 370
Query: 666 L 666
+
Sbjct: 371 V 371
>gi|410726572|ref|ZP_11364809.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp.
Maddingley MBC34-26]
gi|410600605|gb|EKQ55132.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp.
Maddingley MBC34-26]
Length = 454
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 84/305 (27%), Positives = 141/305 (46%), Gaps = 49/305 (16%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACKY 421
GI GSP YRNK EF+ G + +P ++G + G+ V+E C V E K
Sbjct: 114 GIQGSPNQWEYRNKMEFTFGDEAKGEPLSLGMHMRGKSFGILTVDE---CKLVDEDYRKI 170
Query: 422 ASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLI 481
+ ++ + DL + K GF R L +R+ ++ G+ +L+
Sbjct: 171 IKLTVDYFRTKDLSYYKIMKAEGFLRHLVIRKAQNTGE-------------------ILV 211
Query: 482 AQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRL 541
V++ D + +E+ L + S S L +++ N + +DA +
Sbjct: 212 NLVTTTQIDFDL--TEYVNLLRN-------QSYSGNLVSII-----HTENDSRSDAVI-- 255
Query: 542 LSIPKADGEPEESNDVV-EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
PE+ N + + I + + L+F ISP +FFQ NT AE LY++ ++
Sbjct: 256 ---------PEKVNILYGKDYIREILLGLQFNISPFSFFQTNTKGAESLYTIVKEFMGDS 306
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
++FD+ CGTGTIG +A VIGIE+ AV A NA++NG+ NC F+ +
Sbjct: 307 DSKVVFDLYCGTGTIGQIVAPNAKKVIGIELIEEAVEAAKENAKLNGLDNCEFIAGDVAE 366
Query: 661 VMGSL 665
++ ++
Sbjct: 367 IIKTI 371
>gi|445059259|ref|YP_007384663.1| RNA methyltransferase [Staphylococcus warneri SG1]
gi|443425316|gb|AGC90219.1| RNA methyltransferase [Staphylococcus warneri SG1]
Length = 453
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 144/357 (40%), Gaps = 74/357 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPE-WIMKSREIGGLPCKLEGIL 365
L HMSY QL KK + + + + + V + + W
Sbjct: 85 LQHMSYQAQLNMKKEQVVNLFHRKAKFTNTVIKDTVGMEDPW------------------ 126
Query: 366 GSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF 425
YRNK + VG S +P +GF +R+ + + C + + +
Sbjct: 127 ------RYRNKSQIPVGLSKDQQPIMGF----YRQRSHDIIDMESCLIQDQQHQQVMNDL 176
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
++ + + ++ V+N G R L VR G +++M+I
Sbjct: 177 KQLISELNISVYNEKTKKGLLRHLVVRTGHYT------------------NQLMIIL--- 215
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
V N + + A++ P++ I D SNV + L
Sbjct: 216 -------VANGKAFKQAESLVDALVRKYPNVTSIKQNINDAH--SNVIMGPQSITLY--- 263
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
GE E I D +S + F IS +F+Q+N+ EKLY D+A L D ++
Sbjct: 264 ---GEEE---------IEDQLSEVTFNISDQSFYQINSHQTEKLYQQALDYAQLTGDEIV 311
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
D CG GTI + +A V G+E+ SA++DA++NA N ++N FVC KAE+V+
Sbjct: 312 LDTYCGIGTIAIYMAENARHVYGVEVVPSAINDANQNATKNQLENTTFVCGKAEEVI 368
>gi|346307516|ref|ZP_08849649.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dorea formicigenerans
4_6_53AFAA]
gi|345905449|gb|EGX75188.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dorea formicigenerans
4_6_53AFAA]
Length = 465
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 86/359 (23%), Positives = 147/359 (40%), Gaps = 70/359 (19%)
Query: 354 IGGLPCKLEGILGSPLVN-----GYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEP 408
IG +P +L + P+V YRNK +F +G + GF G ++
Sbjct: 106 IGEVPTELLDKVMQPIVGMEEPFHYRNKAQFPIGTDKEGHIITGFYAGRTH----SIIPN 161
Query: 409 VDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEV 468
DC + K I F++ + + ++ K+ G R + +R G
Sbjct: 162 TDCALGVAVNQKILEIILHFMENNHISAYDEEKHKGLVRHVLIRYG-------------- 207
Query: 469 NISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQG 528
E+M+ ++ A E+L + +T++ I ++
Sbjct: 208 ----FKTDEIMVCLVINGEKLPHA------EKLVDKLCEISG-------MTSITISVNKA 250
Query: 529 VSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEK 588
+NV + L + I D I N+++ ISP +F+QVN + EK
Sbjct: 251 KTNVIMGNEIKLLWG---------------QTYITDYIGNVKYQISPLSFYQVNPVQTEK 295
Query: 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI 648
LY L D+A L + ++D+ CG GTI L LA V G+E+ A+ DA NA+IN I
Sbjct: 296 LYGLALDYASLTGNETVWDLYCGIGTISLFLAQNAKQVYGVEIVPQAIDDARNNAKINDI 355
Query: 649 KNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGC 707
N F KAE+V+ ++Y ++ H E ++ ++ + + P +GC
Sbjct: 356 TNAEFYVGKAEEVLPEYYREY------QESHGGETAHADVIVVD---------PPRKGC 399
>gi|224476953|ref|YP_002634559.1| putative RNA methyltransferase [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222421560|emb|CAL28374.1| putative RNA methyltransferase [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 453
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 95/367 (25%), Positives = 154/367 (41%), Gaps = 74/367 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H++Y QLE K+N + + RK + E I G++
Sbjct: 85 LQHLAYDAQLEMKRNQVINLFH------RKGKYTDTIINETI--------------GMM- 123
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
+P YRNK + VG + K +GF +R+ + + +C I + + +
Sbjct: 124 NPW--SYRNKSQIPVGKNKDGKTVMGF----YRQRSHDIIDMDECIIQDSIQNQLMVMIK 177
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
E L + + ++N G R + +R G + EVM++ +
Sbjct: 178 ELLNKYKVSIYNEKSKEGLLRHVIIRVGYTS------------------REVMVVFVTNG 219
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLLSIP 545
F A V E+L +A +P VIQ+ ++ SNV L
Sbjct: 220 KKFKQASVI--IEKLVEA-----------VPNIKSVIQNINESHSNVIMGRHSKTLF--- 263
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
G+ E I D + ++ F IS +F+Q+N+ KLY+ ++A L D +
Sbjct: 264 ---GKDE---------IEDDLDSVEFKISDQSFYQINSEQTVKLYNKALEYAQLNGDETV 311
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
D CG GTIGL +A + V G+E+ +A+ DA +NAE+N N FVC KAE+V+
Sbjct: 312 LDTYCGIGTIGLYMAEKAKHVYGVEVVPAAIEDAKQNAELNSFNNTTFVCGKAEEVIMQW 371
Query: 666 LKDYLNP 672
D + P
Sbjct: 372 KADGIQP 378
>gi|260437263|ref|ZP_05791079.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Butyrivibrio crossotus
DSM 2876]
gi|292810573|gb|EFF69778.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Butyrivibrio crossotus
DSM 2876]
Length = 453
Score = 107 bits (266), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/303 (26%), Positives = 131/303 (43%), Gaps = 51/303 (16%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACKY 421
GI GSP+ YRNK EF+ G + P ++G N + V C N+ E K
Sbjct: 114 GITGSPVTTAYRNKMEFTFGDEFKDGPLSLGLHKKNSFYDILTV---TGCRNIDEDYSKI 170
Query: 422 ASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLI 481
I ++ + LP +++ + G+ R L VR+ G+ +I
Sbjct: 171 LKITVDYFNEKKLPFYHKMTHEGYLRNLLVRKAYKTGE--------------------II 210
Query: 482 AQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRL 541
+ ++T D ++ E L KA D++G N L
Sbjct: 211 IDIITSTQIDFDLSEYVELLKKA--------------------DYKGTLN-----GILHT 245
Query: 542 LSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
++ AD E V+ + I++ + L+F I+P +FFQ N+L AE LY+ ++
Sbjct: 246 VNDSLADAVINEGTKVLYGKDYIYEELLGLKFKITPFSFFQTNSLGAEVLYTKTREFVGE 305
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659
+ ++FD+ GTGTI LA V+G+E+ AV A NA +NG+ NC F+
Sbjct: 306 IDNQVVFDLYSGTGTIAQILAPVAKKVVGVEIIEEAVVAARENARLNGLDNCEFIAGDVL 365
Query: 660 DVM 662
V+
Sbjct: 366 KVI 368
>gi|422882551|ref|ZP_16929007.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK355]
gi|332359419|gb|EGJ37239.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK355]
Length = 469
Score = 107 bits (266), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 110/412 (26%), Positives = 169/412 (41%), Gaps = 77/412 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLA----GDGSGLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGEL + G G E L + R + L H++Y QL
Sbjct: 46 ENALPGELIRMRVLKVNKKIGFGKVEEFLRISDQRNENLDMAYLRTGIADLGHLNYPAQL 105
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K+ + L K+ GVS E +P L + PL GYRNK
Sbjct: 106 DFKRKQVKDSLYKIA---------GVSDVE----------VPPTLG--MEQPL--GYRNK 142
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + + + + P + ++ ++ L++ DL
Sbjct: 143 AQVPVR-RVNGQLETGFFRKNSHDLLPIEDFYIQDPVIDQVIL----FTRDLLRRFDLKP 197
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
++ + +G R L VR G G E+M+I + V
Sbjct: 198 YDEQEKTGLIRNLVVRRGHYSG------------------EIMVIMVTTRPKI--FRVEQ 237
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESND 556
ERL + F P ++Q+ N P +A I D D
Sbjct: 238 LMERLTETF-----------PAIKSIMQN----INDQPGNA------IFGKDWRTLYGQD 276
Query: 557 VVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIG 616
I D + F I+ AF+QVNT AEKLY D+++L D ++ D G GTIG
Sbjct: 277 Y----ITDQMLGNDFQIAAPAFYQVNTEMAEKLYQTAIDFSELTADDMVIDAYSGIGTIG 332
Query: 617 LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
L++A V V G+E+ AV ++ +NAEINGI N +VCA AE+ + + LK+
Sbjct: 333 LSVAKHVKQVYGMEVIPEAVENSRKNAEINGIANASYVCAPAEEAIQNWLKE 384
>gi|395241160|ref|ZP_10418178.1| 23S rRNA (Uracil-5-)-methyltransferase RumA2 [Lactobacillus
pasteurii CRBIP 24.76]
gi|394481451|emb|CCI84418.1| 23S rRNA (Uracil-5-)-methyltransferase RumA2 [Lactobacillus
pasteurii CRBIP 24.76]
Length = 449
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 103/413 (24%), Positives = 171/413 (41%), Gaps = 79/413 (19%)
Query: 262 SAVPGELAEAHASSNGHEDGNGNDEGLAGDG-SGLKVKSARDVVT---PLAHMSYSVQLE 317
+A+PGE+ A E + + + VK + V T LAH++Y QL+
Sbjct: 33 NALPGEIVRAKILKVKKSFAFARIEAIIKESPDRITVKLNQWVQTGLASLAHLTYDKQLD 92
Query: 318 HKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKC 377
K+ + +L+K + K+ + SP GYRNK
Sbjct: 93 FKRKQVVNLLQKAHLDQ------------------------IKVGQTVASPEETGYRNKA 128
Query: 378 EFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVW 437
+ V ++ + +GF + + V P + + I L+++ +P +
Sbjct: 129 QVPVR-RVKGQLEIGFFRKHSHDLVPLDNFFTTDPEIDRVLLAVRDI----LRKNQVPAY 183
Query: 438 NRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSE 497
+ ++ G R L VR R+ G E+M+I ++ +
Sbjct: 184 DELRHKGEVRYLEVRRSRATG------------------EIMVIL---------ICLHKD 216
Query: 498 FERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDV 557
F +L K A S + ++V+ + +NV L
Sbjct: 217 FPQLKKV----AKEISQIRDVVSVVLNHNPQKTNVILGKKDYLLAG-------------- 258
Query: 558 VEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGL 617
+A+I D I ++ F ISP +FFQ+N+L +LY L D A+L + ++ D G GTIGL
Sbjct: 259 -KAQIVDKIGDVEFRISPKSFFQINSLQTPRLYQLAIDKANLTKEDVVIDAYSGIGTIGL 317
Query: 618 TLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYL 670
++A V V GIE+ AV DA+ NA++N I N +V KAE++M KD L
Sbjct: 318 SVAKHVKEVRGIEIIDDAVKDANNNAKLNTINNASYVTGKAEEIMPQWAKDGL 370
>gi|313887799|ref|ZP_07821479.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312846142|gb|EFR33523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 443
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 104/373 (27%), Positives = 158/373 (42%), Gaps = 82/373 (21%)
Query: 310 MSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPL 369
+SY +L++KK I + K+ NG+ RE+ +P SP+
Sbjct: 79 LSYEEELKYKKELIENLFKE----------NGIE--------REMEIIP--------SPV 112
Query: 370 VNGYRNKCEFSVGYSLQAKP-TVGFMLGN-FREGVTAVEEPVDCPNVSEIACKYASIFQE 427
YRNK E++ G + P ++G + N F E + DC V E + +
Sbjct: 113 HKNYRNKMEYTFGDEYKGGPLSLGLHVKNRFHEIINTT----DCKIVDEDFNTIRAEVRT 168
Query: 428 FLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSA 487
+ + +NR ++ GF R L +R+ G E+M++ SS
Sbjct: 169 YFEDLGEAQYNRKRHEGFLRHLLIRKATKTG------------------EIMILLSTSSQ 210
Query: 488 TFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKA 547
+ D E F G L L ++ + V N A +DA +
Sbjct: 211 SQLD-------EEAFIKFLLG-------LDLKGQIVSIYH-VKNDALSDAIV-------- 247
Query: 548 DGEPEESNDVV-EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
PEE + + I + + LRF ISP +FFQ NT +AE LY + + D D L+F
Sbjct: 248 ---PEEIKLIYGKDHIEEEVLGLRFKISPFSFFQTNTKSAEVLYKMAREKID-AKDKLVF 303
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
D+ GTGTI LA VIG+E+ AV A NA++NGI N F+ + V+ L
Sbjct: 304 DLYSGTGTITQVLAESAKKVIGVEIVEEAVEAARENAKLNGIDNVEFIASDVLKVLDDLD 363
Query: 667 KD----YLNPLRE 675
K+ L+P RE
Sbjct: 364 KNPDLIVLDPPRE 376
>gi|323351306|ref|ZP_08086962.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
VMC66]
gi|322122530|gb|EFX94241.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
VMC66]
Length = 469
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 110/413 (26%), Positives = 171/413 (41%), Gaps = 79/413 (19%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDG----SGLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGEL + G G E L + R + L H++Y QL
Sbjct: 46 ENALPGELIRMRVLKVNKKIGFGKVEEFLRTSDQRNENLDMAYLRTGIADLGHLNYPAQL 105
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K+ + L K+ G+S ++ LP LG GYRNK
Sbjct: 106 DFKRKQVKDSLYKIA---------GLS---------DVEVLPT-----LGMEQPLGYRNK 142
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF-QEFLQQSDLP 435
+ V + + GF N + + + + P + ++ IF ++ L++ DL
Sbjct: 143 AQVPVR-RVNGQLETGFFRKNSHDLLPIEDFYIQDPVIDQVI-----IFTRDLLRRFDLK 196
Query: 436 VWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVN 495
++ + +G R L VR G G E+M+I + V
Sbjct: 197 PYDEQEKTGLIRNLVVRRGHYSG------------------EIMVILVTTRPKI--FRVE 236
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
ERL +AF P ++Q+ N P +A I D
Sbjct: 237 QLMERLTEAF-----------PAIKSIMQN----INDQPGNA------IFGKDWRTLYGQ 275
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
D + R+ + F IS AF+QVNT AEKLY D+++L D ++ D G GTI
Sbjct: 276 DYITDRMLGN----DFQISGPAFYQVNTEMAEKLYQTAIDFSELTSDDVVLDAYSGIGTI 331
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
GL++A V V G+E+ AV ++ +NA INGI N +VCA AE+ + + LK+
Sbjct: 332 GLSVAKHVKEVYGVEVIPEAVENSQKNAAINGITNASYVCAPAEEAIQNWLKE 384
>gi|307244550|ref|ZP_07526655.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
stomatis DSM 17678]
gi|306492077|gb|EFM64125.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
stomatis DSM 17678]
Length = 455
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 99/357 (27%), Positives = 153/357 (42%), Gaps = 74/357 (20%)
Query: 312 YSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVN 371
Y QLE K+N I ++ K G+ +++ GI GSP
Sbjct: 87 YEKQLEIKRNQILELFDK----------AGIKDYDFL--------------GIQGSPSQY 122
Query: 372 GYRNKCEFSVGYSLQAKPTVGFM--LGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFL 429
YRNK EF+ G + P M +G F + VT DC + E K +++
Sbjct: 123 AYRNKMEFTFGDEYKDGPLSLGMHKVGRFIDIVTVD----DCRIIDEDFRKIMVGTRDYF 178
Query: 430 QQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATF 489
++ LP + F + G+ R L VR G + G+ + VNI V+S+
Sbjct: 179 EEKGLPYYRTFNHQGYLRHLVVRRGENTGEIM-----------VNI--------VTSSQV 219
Query: 490 DDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADG 549
D + + K F G + L ++ + G+++ D LR+L
Sbjct: 220 DYRMEDY------KDFLLGLDLENQ---LVGILHTINDGLADAVQCD-ELRIL------- 262
Query: 550 EPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWA-DLGPDTLLFDV 608
D ++ + LRF ISP +FFQ NT AE LY++ ++A D G ++FD+
Sbjct: 263 ---HGRDY----FYEEVLGLRFKISPFSFFQTNTKGAEVLYTIAREFAGDKGDGKVVFDL 315
Query: 609 CCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
GTGTIG +A V GIE+ AV A+ NA +N + NC F+ ++ SL
Sbjct: 316 YSGTGTIGQLMAKTAKKVYGIELVEEAVVAANHNAGLNKLDNCEFIAGDVAKLVTSL 372
>gi|255305404|ref|ZP_05349576.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
ATCC 43255]
Length = 451
Score = 106 bits (265), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 136/308 (44%), Gaps = 55/308 (17%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREG----VTAVEEPVDCPNVSEIA 418
GI GSP YRNK E++ G ++ P LG ++G + VEE C V E
Sbjct: 114 GIEGSPENKYYRNKMEYTFGDEVKNGP---LTLGLHKKGKHIDIQTVEE---CMLVDEDF 167
Query: 419 CKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEV 478
K + EF + LP + + G+ R L VR+G ++ +E+
Sbjct: 168 SKILASSVEFFDEKKLPYYRTMNHKGYLRHLVVRKG------------------IHTNEI 209
Query: 479 ML-IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADA 537
M+ I S FD +EF+ L A L ++ + G+++ D
Sbjct: 210 MVNIVTSSQEDFD----MNEFKDLLLGIDLKA-------ELVGVLHTINDGLADAVQCD- 257
Query: 538 PLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWA 597
LR+L D I + I L+F ISP +FFQ NT AE LYS+ D+
Sbjct: 258 ELRVLY----------GRD----YIQEEILGLKFKISPFSFFQTNTKGAEVLYSIARDFI 303
Query: 598 DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAK 657
D ++FD+ GTG+IG +A V GIE+ AV A+ NA++NG+ NC F+
Sbjct: 304 GDYNDKVVFDLYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGD 363
Query: 658 AEDVMGSL 665
V+ L
Sbjct: 364 VAKVVKDL 371
>gi|20808229|ref|NP_623400.1| SAM-dependent methyltransferase [Thermoanaerobacter tengcongensis
MB4]
gi|50401766|sp|Q8R918.1|Y1812_THETN RecName: Full=Uncharacterized RNA methyltransferase TTE1812
gi|20516825|gb|AAM25004.1| SAM-dependent methyltransferases related to tRNA
(uracil-5-)-methyltransferase [Thermoanaerobacter
tengcongensis MB4]
Length = 452
Score = 106 bits (265), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 104/367 (28%), Positives = 150/367 (40%), Gaps = 84/367 (22%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H+SY QLE+K + L++ IG + K+ +G
Sbjct: 85 LQHLSYKGQLEYKTQKVKDNLER------------------------IGKIYTKVHYAIG 120
Query: 367 --SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVD-CPNVSEIACKYAS 423
+PL YRNK +F VG + K T GF + E V PVD C ++ K S
Sbjct: 121 MENPL--NYRNKGQFVVGEIGREKIT-GFYSFHSHEIV-----PVDNCLIQHPLSNKVVS 172
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
+ +E+L + D+ V++R K G R + + G EVM I
Sbjct: 173 VVKEWLNECDISVYDRKKGKGLIRHVVAKVAFKTG------------------EVMAII- 213
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLS 543
V+N E + P L L N+ + L +
Sbjct: 214 ---------VINGEDIPCKEELIEALKEKVPGLKSVIL---------NINTRRTKMILGN 255
Query: 544 IPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGP 601
N V+ + I D I +LRF ISP +FFQVN + E LY ++A L
Sbjct: 256 ----------KNIVIYGKNTIEDFIKDLRFEISPLSFFQVNPIQTEILYDKAIEYAGLTG 305
Query: 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661
++ DV G GTI L A + V GIE AV DA +NA++NG+KN +F+ KAE
Sbjct: 306 KEVVIDVYSGIGTISLFAAKKASFVYGIESVKEAVEDAEKNAQVNGVKNVKFIWGKAERE 365
Query: 662 MGSLLKD 668
+ L K+
Sbjct: 366 IAKLYKE 372
>gi|238855408|ref|ZP_04645719.1| 23S rRNA-methyltransferase RumA [Lactobacillus jensenii 269-3]
gi|260665351|ref|ZP_05866199.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
SJ-7A-US]
gi|313473079|ref|ZP_07813563.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
1153]
gi|238832006|gb|EEQ24332.1| 23S rRNA-methyltransferase RumA [Lactobacillus jensenii 269-3]
gi|239528690|gb|EEQ67691.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
1153]
gi|260560855|gb|EEX26831.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
SJ-7A-US]
Length = 447
Score = 106 bits (264), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 104/407 (25%), Positives = 169/407 (41%), Gaps = 80/407 (19%)
Query: 262 SAVPGELAEAHASSNGHEDGNGNDEGL---AGDGSGLKVKS-ARDVVTPLAHMSYSVQLE 317
+A+PGE+ EA E L + D +K+ + + LAH+ Y QL+
Sbjct: 33 NALPGEVVEAKILKVKKSFAFAKIEKLIKQSPDRVTIKLNQWVQTGLASLAHIKYDKQLD 92
Query: 318 HKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKC 377
K+ + +L+K N K+ + SP GYRNK
Sbjct: 93 FKRQQVINLLEKAHLNK-------------------------KVNATVASPEETGYRNKA 127
Query: 378 EFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVW 437
+ V ++ + +GF + + V P + + I L+++ +P +
Sbjct: 128 QVPVR-KVKGQLEIGFFRKHSHDLVPMENFFTTDPEIDRVLVATRDI----LRKNHIPAY 182
Query: 438 NRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSE 497
+ KN G R L VR ++ G E+M+I ++ +
Sbjct: 183 DEVKNKGEVRYLEVRRSKANG------------------EMMVIL---------VCLHKD 215
Query: 498 FERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDV 557
F +LAK A S + ++++ + +NV L G P+
Sbjct: 216 FPQLAKV----ADEISQISDVVSVILNHNPKKTNVILGKHDYLL------SGNPQ----- 260
Query: 558 VEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGL 617
I D I ++ F IS +FFQ+N+L +LY+L + A L D + D G GTIGL
Sbjct: 261 ----IEDKIGDVCFKISAQSFFQINSLQTPRLYNLAIEKAGLTSDDTVIDAYSGIGTIGL 316
Query: 618 TLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664
++A V V G+E+ AV DA NA +NGI+N +VC KAE++M S
Sbjct: 317 SVAKHVKSVRGVEIVKPAVQDAKENALLNGIENADYVCGKAEELMPS 363
>gi|408789980|ref|ZP_11201614.1| RNA methyltransferase, TrmA family [Lactobacillus florum 2F]
gi|408520719|gb|EKK20753.1| RNA methyltransferase, TrmA family [Lactobacillus florum 2F]
Length = 456
Score = 106 bits (264), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 94/371 (25%), Positives = 153/371 (41%), Gaps = 80/371 (21%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ PL H+ Y QLE K++ +A + +K N A G+ P
Sbjct: 87 IAPLQHLKYEKQLEFKQHQLALLFQKAQLNVTVAPTIGMEQPVQ---------------- 130
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
YRNK + V S+ + GF + + + P++ + E A A
Sbjct: 131 ---------YRNKAQIPVR-SINGQLETGFYRRHSHDLI-----PIEDFYIQEPAIDQAL 175
Query: 424 -IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIA 482
+ ++ L+ + +N + G R + VR G E+M++
Sbjct: 176 LVVRDVLRDFQVTAYNEENHRGVIRNIMVRYGHHS------------------HELMVVL 217
Query: 483 QVSSATFD-DAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRL 541
++ D +A+ + ++L + LT+L++ + N D L
Sbjct: 218 VINEELVDAEAITQAILKKLPQ--------------LTSLLVNVNHSHGNRLLGDKTYLL 263
Query: 542 LSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGP 601
+ I D I +F ISP +F+QVN + E+LY D A L P
Sbjct: 264 AG---------------QETITDEILGTKFMISPLSFYQVNPVQTERLYQQVLDKAALQP 308
Query: 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661
D L+ D CG G+I L LA +V V G+++ A+A++DA NA++NGI N FV KAED
Sbjct: 309 DDLVIDAYCGIGSISLVLAPKVKHVYGVDVVAAAITDAKANAKLNGIDNVTFVTNKAEDQ 368
Query: 662 MGSLLKDYLNP 672
+ D L+P
Sbjct: 369 LAKWEADGLHP 379
>gi|326804241|ref|YP_004322059.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aerococcus urinae
ACS-120-V-Col10a]
gi|326650795|gb|AEA00978.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aerococcus urinae
ACS-120-V-Col10a]
Length = 459
Score = 106 bits (264), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 99/368 (26%), Positives = 146/368 (39%), Gaps = 75/368 (20%)
Query: 306 PLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPE-WIMKSREIGGLPCKLEGI 364
PL HM+Y QL K+ + L+K + + + E W
Sbjct: 90 PLQHMAYPAQLAFKRQQVVNSLQKQGLLEKTQVLETIGMEEPW----------------- 132
Query: 365 LGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASI 424
YRNK + +G + K GF + V + + P + E K +I
Sbjct: 133 -------HYRNKAQIPIGQA-DGKLYTGFYRKGSHKLVPMTDYQIQLPGIDETLQKVLAI 184
Query: 425 FQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQV 484
L Q + ++ + G R L VR+G G +VML+
Sbjct: 185 ----LNQYPISAYDEDSHQGLLRHLIVRQGYYTG------------------QVMLVI-- 220
Query: 485 SSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSI 544
V+N + +L + AT L ++VI +Q +NV I
Sbjct: 221 --------VINGK--KLPEEEKIVATLKDELPDLVSIVINSNQKNTNV-----------I 259
Query: 545 PKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTL 604
D D+ E R+ D L F IS +FFQVNT AEKLY + ADL D +
Sbjct: 260 MGQDQRVVYGEDLYEDRMFD----LTFRISSKSFFQVNTSQAEKLYHQALEAADLKGDEV 315
Query: 605 LFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664
+ D CG GTI L LA V G+E+ A++ A NA++NG+ N F KAE+V+
Sbjct: 316 VVDAYCGIGTISLCLAQAAKEVYGVEVVPDAINQARENAQLNGLDNVTFQAGKAEEVIQD 375
Query: 665 LLKDYLNP 672
++ L P
Sbjct: 376 WVQAGLKP 383
>gi|357055866|ref|ZP_09116926.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
clostridioforme 2_1_49FAA]
gi|355381792|gb|EHG28907.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
clostridioforme 2_1_49FAA]
Length = 469
Score = 106 bits (264), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 137/312 (43%), Gaps = 49/312 (15%)
Query: 360 KLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFM--LGNFREGVTAVEEPVDCPNVSEI 417
+ +GI SP +GYRNK EFS G ++ P M G+F + VT E C V
Sbjct: 113 EFQGIKASPTSSGYRNKMEFSFGDEVKDGPLALGMHKRGSFYDIVTTPE----CRIVHPD 168
Query: 418 ACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISE 477
C+ +E+ ++ + + + ++ G+ R L VR G+
Sbjct: 169 FCRILVATKEYFEELGIAFYKKLQHQGYLRHLLVRRAVKTGE------------------ 210
Query: 478 VMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPL----TALVIQDHQGVSNVA 533
+L+ V+S + +E E L+K T LPL ++ ++ +++V
Sbjct: 211 -ILVDLVTSTQREYLGERTEEEVLSKW-----TEKLAGLPLDGRLAGILHTENDSLADVV 264
Query: 534 PADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLG 593
+DA L + ++ + LRF ISP +FFQ N+L AE LY
Sbjct: 265 QSDATHILYG---------------QDYFYEELLGLRFRISPFSFFQTNSLGAEILYDTV 309
Query: 594 GDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRF 653
+ D ++FD+ GTGTI LA V+G+E+ AV A NAE+NG++NC F
Sbjct: 310 RGFVGDTKDRVVFDLYSGTGTIAQILASVAKKVVGVEIVEEAVRSAKVNAELNGLENCEF 369
Query: 654 VCAKAEDVMGSL 665
+ V+ L
Sbjct: 370 LAGDVLKVIDEL 381
>gi|256752392|ref|ZP_05493252.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus
CCSD1]
gi|256748727|gb|EEU61771.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus
CCSD1]
Length = 453
Score = 106 bits (264), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 90/360 (25%), Positives = 150/360 (41%), Gaps = 76/360 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H+SY QL++K + L++ IG + ++ +G
Sbjct: 85 LQHLSYEGQLKYKTQKVKDNLER------------------------IGKVYTRVHDTIG 120
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVD-CPNVSEIACKYASIF 425
YRNK +F VG ++ K GF + V PV+ C EI+ + A +
Sbjct: 121 MEKPQRYRNKAQFPVG-MVEGKAVTGFYAPRSHDIV-----PVESCMIQHEISDEIARVV 174
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
+ ++++ ++ V++ G R + R G+ + V ++
Sbjct: 175 RNWIRKYNISVYDEKTGKGLIRHIVTRVAFKTGEVMAV----------------IVINGK 218
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
+ ++++ E + L ++VI + +NV + + +
Sbjct: 219 DIPYKKQLIDALKEEIR--------------GLKSVVININTKKTNVIMGEENITIYG-- 262
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
S++++ D I +++F ISP +FFQVN + E LY ++ADL + +
Sbjct: 263 --------SDNII-----DYIKDIKFEISPLSFFQVNPVQTEVLYGKALEYADLKGEETV 309
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
DV CG GTI L A + V GIE AV DA RNA INGIKN F+ AE VM L
Sbjct: 310 IDVYCGIGTISLFAAQKAAFVYGIEAVYQAVEDAKRNAYINGIKNVEFISGDAEKVMPEL 369
>gi|256852247|ref|ZP_05557633.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
27-2-CHN]
gi|260661721|ref|ZP_05862632.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
115-3-CHN]
gi|256615293|gb|EEU20484.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
27-2-CHN]
gi|260547468|gb|EEX23447.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
115-3-CHN]
Length = 447
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 112/451 (24%), Positives = 185/451 (41%), Gaps = 96/451 (21%)
Query: 216 KNAVEELEGISIGNKTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASS 275
KN + ELE + + + VA++ MT+ N +A+PGE+ EA
Sbjct: 3 KNQLVELEITDLSYEAMGVAHL----------DGMTIFVN------NALPGEVVEAKILK 46
Query: 276 NGHEDGNGNDEGL---AGDGSGLKVKS-ARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLT 331
E + + D +K+ + + LAH+ Y QLE K+ + +L+K
Sbjct: 47 VKKSFAFAKIENIIKQSPDRVTIKLNQWVQTGLASLAHIKYEKQLEFKRQQVINLLEKAH 106
Query: 332 RNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTV 391
N K+ + SP GYRNK + V +++ K +
Sbjct: 107 LNK-------------------------KVNETVASPEEVGYRNKAQVPVR-NVKGKLEI 140
Query: 392 GFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTV 451
GF + + V P + + I L+++ +P ++ KN G R L V
Sbjct: 141 GFFRKHSHDLVPMENFFTTDPEIDRVLVATRDI----LRKNHVPAYDEVKNKGEVRYLEV 196
Query: 452 REGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATA 511
R ++ S++M+I ++ +F +L K A
Sbjct: 197 RRSKAN------------------SDMMVIL---------VCLHKDFPQLVKV----ADE 225
Query: 512 SSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRF 571
S + ++++ + +NV L G P+ I D I ++RF
Sbjct: 226 ISQISGVVSVILNHNPKKTNVILGKHDYLL------AGNPQ---------IEDKIGDIRF 270
Query: 572 CISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEM 631
IS +FFQ+N+L +LY+L + A L + D G GTIGL++A V V G+E+
Sbjct: 271 KISAQSFFQINSLQTPRLYNLAIEKAGLSKKDTVIDAYSGIGTIGLSVAKHVKQVYGVEI 330
Query: 632 NASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
AV DA NA +NGI+N +VC KAE++M
Sbjct: 331 VKPAVQDARENALLNGIENAEYVCGKAEELM 361
>gi|227512910|ref|ZP_03942959.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
buchneri ATCC 11577]
gi|227083910|gb|EEI19222.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
buchneri ATCC 11577]
Length = 456
Score = 105 bits (263), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 96/371 (25%), Positives = 151/371 (40%), Gaps = 79/371 (21%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ PL H++Y QLE K++ I K+ + + G+ P
Sbjct: 85 IAPLQHLAYPAQLEFKRHQILNDFNKMKLDVEVSPTIGMDKPY----------------- 127
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
YRNK + V L + GF + + V + + P + K
Sbjct: 128 --------HYRNKAQIPVR-MLNGRLQTGFYRKHSHDLVPIEDFYIQDPEID----KAVV 174
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
I ++ L++ + ++ + G R + VR G + S M+I
Sbjct: 175 IVRDILRKFQITPYDEQTHRGVIRNIMVRRG-------------------HYSHEMMIVL 215
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLS 543
++ + + SE E +++ + LP ++Q N+ P +
Sbjct: 216 ITKS----KKLPSEAEIISE--------TVNQLPEVKSIVQ------NINPKNT------ 251
Query: 544 IPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGP 601
+ N V+ + I D + L F ISP +F+QVN + EKLY L A L
Sbjct: 252 ----NSLMGNQNKVLWGKGTITDQLMGLDFEISPNSFYQVNPIQTEKLYKLAIQKAQLNK 307
Query: 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661
D ++ D CG GTI L+LA V V G+E+ A+ DA RNA IN I NC+FV AKAE+
Sbjct: 308 DDIVIDAYCGIGTISLSLAKVVKKVYGVEIVPEAIEDAKRNAHINKISNCKFVVAKAEEQ 367
Query: 662 MGSLLKDYLNP 672
+G K L P
Sbjct: 368 LGKWQKAGLKP 378
>gi|389575978|ref|ZP_10166006.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium
cellulosolvens 6]
gi|389311463|gb|EIM56396.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium
cellulosolvens 6]
Length = 490
Score = 105 bits (263), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 106/420 (25%), Positives = 181/420 (43%), Gaps = 73/420 (17%)
Query: 260 SESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLKVKSARDVVTP------------L 307
+++ VPG+LAE G G L +++++D P L
Sbjct: 44 TKNTVPGDLAEIRIVKTQKTYGFGRLMRL--------LEASKDRTEPFCPIAGQCGGCQL 95
Query: 308 AHMSYSVQLEHKKNSIAQMLKKL--TRNARKACPNGVSLPEWIMKSREIGGLPCKLEGIL 365
HM+Y +L+ K+N + L+++ R+ G ++ G + ++E I+
Sbjct: 96 QHMTYEAELQLKENKVRNDLERIGGIVTERRTADAGSE-----DQADRTGNV--RMEPIV 148
Query: 366 GSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF 425
G + YRNK +F +G Q P GF G+ + E DC E +
Sbjct: 149 GMDVNRRYRNKAQFPIGEDGQGNPVAGFYAGHSHR-IIPCE---DCQLGVEENREILRAV 204
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
+++++ + +N G R + +R+G + G+ + V LI
Sbjct: 205 LDWMKEQRVAAYNEETGKGIVRHVLIRKGFATGEII----------------VCLIINAR 248
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
DA++ +RL S + + I + +NV +AP+R +
Sbjct: 249 ELPRKDALI----DRL-----------SVLKGMVGITISSNTKKTNVI-MNAPVRTIW-- 290
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
GE E D++ + +R+ ISP +F+QVN + EK+Y + ADL +
Sbjct: 291 -GRGEIE---DILRSEAFGV--QVRYSISPASFYQVNPVQTEKIYQKVLELADLSGTETV 344
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
D+ CG GTI L LA + VIG+E+ A+ DA +NA +NGI+N F KAE+V+ +L
Sbjct: 345 MDLYCGIGTISLFLAAKAAKVIGVEIVPEAIEDAKKNAAMNGIENAEFYVGKAEEVVPAL 404
>gi|422858137|ref|ZP_16904787.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK1057]
gi|327461108|gb|EGF07441.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK1057]
Length = 464
Score = 105 bits (263), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 106/412 (25%), Positives = 167/412 (40%), Gaps = 77/412 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDG----SGLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGEL + G G E L + R + L H++Y QL
Sbjct: 46 ENALPGELIRMRVLKVNKKIGFGKVEEFLRTSDQRNENLDMAYLRTGIADLGHLNYPAQL 105
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K+ + L K+ + P + + + PL GYRNK
Sbjct: 106 DFKRKQVKDSLYKIAGLSDVEVPPTLGMEQ---------------------PL--GYRNK 142
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + + + + P + ++ ++ L++ DL
Sbjct: 143 AQVPVR-RVNGQLETGFFRKNSHDLLPIEDFYIQDPVIDQVIL----FTRDLLRRFDLKP 197
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
++ + +G R L VR G G E+M+I + V
Sbjct: 198 YDEQEKTGLIRNLVVRRGHYSG------------------EIMVILVTTRPKI--FRVEQ 237
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESND 556
ERL +AF P ++Q+ N P +A I D D
Sbjct: 238 LMERLTEAF-----------PAIKSIMQN----INDQPGNA------IFGKDWRTLYGQD 276
Query: 557 VVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIG 616
I D + F IS AF+QVNT AEKLY D+++L D ++ D G GTIG
Sbjct: 277 Y----ITDQMLGNDFQISGPAFYQVNTEMAEKLYQTAIDFSELTTDDVVLDAYSGIGTIG 332
Query: 617 LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
L++A +V V G+E+ AV ++ +NA INGI N +VCA AE+ + + LK+
Sbjct: 333 LSVAKQVKEVYGVEVIPEAVENSRKNAAINGITNASYVCAPAEEAIQNWLKE 384
>gi|239638046|ref|ZP_04679005.1| 23S rRNA-methyltransferase RumA [Staphylococcus warneri L37603]
gi|239596329|gb|EEQ78867.1| 23S rRNA-methyltransferase RumA [Staphylococcus warneri L37603]
Length = 453
Score = 105 bits (263), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 89/357 (24%), Positives = 140/357 (39%), Gaps = 74/357 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPE-WIMKSREIGGLPCKLEGIL 365
L HMSY QL KK + + + + + V + E W
Sbjct: 85 LQHMSYQAQLNMKKEQVVNLFHRKSNFTNTVIKDTVGMEEPW------------------ 126
Query: 366 GSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF 425
YRNK + VG S P +GF +R+ + + C + + +
Sbjct: 127 ------RYRNKSQIPVGLSKNQLPIMGF----YRQRSHDIIDMDSCLIQDQQHQQVMNDV 176
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
++ + ++ V+N G R L +R G +++M+I
Sbjct: 177 KQLISNLNISVYNEKTKKGLLRHLVMRTGHYT------------------NQLMIIL--- 215
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
V N + + A+ P++ I D SNV + L
Sbjct: 216 -------VTNGKAFKQAQVMVDALVRKYPNVTSIKQNINDAH--SNVIMGHQSITLY--- 263
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
GE E I D ++ + F IS +F+Q+N+ EKLY D+A L + ++
Sbjct: 264 ---GEEE---------IKDQLNEVTFNISDQSFYQINSHQTEKLYQQALDYAQLTGNEIV 311
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
D CG GTIGL +A V G+E+ SA+ DA +NA IN +N FVC KAE+V+
Sbjct: 312 LDTYCGIGTIGLYMAENAKHVYGVEVVPSAIKDAKQNATINQFENTTFVCGKAEEVI 368
>gi|423080918|ref|ZP_17069531.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium difficile
002-P50-2011]
gi|423085399|ref|ZP_17073842.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium difficile
050-P50-2011]
gi|357549720|gb|EHJ31560.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium difficile
050-P50-2011]
gi|357551691|gb|EHJ33476.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium difficile
002-P50-2011]
Length = 545
Score = 105 bits (263), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 135/308 (43%), Gaps = 55/308 (17%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREG----VTAVEEPVDCPNVSEIA 418
GI GSP YRNK E++ G ++ P LG ++G + VEE C V E
Sbjct: 116 GIEGSPENKYYRNKMEYTFGDEVKNGP---LTLGLHKKGKHIDIQTVEE---CMLVDEDF 169
Query: 419 CKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEV 478
K EF + LP + + G+ R L VR+G ++ +E+
Sbjct: 170 SKILVSSVEFFNEKKLPYYRTMNHKGYLRHLVVRKG------------------IHTNEI 211
Query: 479 ML-IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADA 537
M+ I S FD +EF+ + A L ++ + G+++ D
Sbjct: 212 MVNIVTSSQEDFD----MNEFKDMLLGIDLKA-------ELVGVLHTINDGLADAVQCD- 259
Query: 538 PLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWA 597
LR+L D I + I L+F ISP +FFQ NT AE LYS+ D+
Sbjct: 260 ELRVLY----------GRD----YIQEEILGLKFKISPFSFFQTNTKGAEVLYSIARDFI 305
Query: 598 DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAK 657
D ++FD+ GTG+IG +A V GIE+ AV A+ NA++NG+ NC F+
Sbjct: 306 GDYNDKVVFDLYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGD 365
Query: 658 AEDVMGSL 665
V+ L
Sbjct: 366 VAKVVKDL 373
>gi|227523038|ref|ZP_03953087.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
hilgardii ATCC 8290]
gi|227089856|gb|EEI25168.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
hilgardii ATCC 8290]
Length = 456
Score = 105 bits (263), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 96/371 (25%), Positives = 151/371 (40%), Gaps = 79/371 (21%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ PL H++Y QLE K++ I K+ + + G+ P
Sbjct: 85 IAPLQHLAYPAQLEFKRHQILNDFNKMKLDVEVSPTIGMDKP------------------ 126
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
YRNK + V L + GF + + V + + P + K
Sbjct: 127 -------YHYRNKAQIPVR-MLNGRLQTGFYRKHSHDLVPIEDFYIQDPEID----KAVV 174
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
I ++ L++ + ++ + G R + VR G + S M+I
Sbjct: 175 IVRDILRKFQITPYDEQTHRGVIRNIMVRRG-------------------HYSHEMMIVL 215
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLS 543
++ + + SE E +++ + LP ++Q N+ P +
Sbjct: 216 ITKS----KKLPSEAEIISE--------TVNQLPEVKSIVQ------NINPKNT------ 251
Query: 544 IPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGP 601
+ N V+ + I D + L F ISP +F+QVN + EKLY L A L
Sbjct: 252 ----NSLMGNQNKVLWGKGTITDQLMGLDFEISPNSFYQVNPIQTEKLYKLAIQKAQLNK 307
Query: 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661
D ++ D CG GTI L+LA V V G+E+ A+ DA RNA IN I NC+FV AKAE+
Sbjct: 308 DDIVIDAYCGIGTISLSLAKVVKKVYGVEIVPEAIEDAKRNAHINKISNCKFVVAKAEEQ 367
Query: 662 MGSLLKDYLNP 672
+G K L P
Sbjct: 368 LGKWQKAGLKP 378
>gi|225376677|ref|ZP_03753898.1| hypothetical protein ROSEINA2194_02319 [Roseburia inulinivorans DSM
16841]
gi|225211560|gb|EEG93914.1| hypothetical protein ROSEINA2194_02319 [Roseburia inulinivorans DSM
16841]
Length = 498
Score = 105 bits (263), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 91/320 (28%), Positives = 147/320 (45%), Gaps = 39/320 (12%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKPTVGFM--LGNFREGVTAVEEPVDCPNVSEIACK 420
GI SP GYRNK EFS G + P M G+F + VT VE +C V E K
Sbjct: 119 GIKESPRQTGYRNKMEFSFGDEFKDGPLALGMHKRGSFYDIVT-VE---NCQIVDEDFRK 174
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLD--VENLEVNISEVNISEV 478
S+ + ++ ++ +++ +++G+ R L VR+ G+ L V + + + +++
Sbjct: 175 ILSVTLAYFREKNITYYHKLRHTGYLRHLLVRKAVKTGEILVDLVTTTQTDFPGIAAAQM 234
Query: 479 MLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAP 538
+ + ++A +E E L + + A A+ +T ++ H NVA
Sbjct: 235 DEVESTLNNAQENAFAGTE-EELLEGWKAALLAADYKGIMTGIL---HTRNDNVA----- 285
Query: 539 LRLLSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLG--- 593
D E DV+ + ++ + LRF I+P +FFQ N+L AE LY
Sbjct: 286 ---------DTVTNEGTDVLYGQDFFYEELLGLRFKITPFSFFQTNSLGAEVLYQTAREF 336
Query: 594 -GDWADLGPDT-------LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEI 645
GD G D ++FD+ GTGTI L+ VIG+E+ AV A NA++
Sbjct: 337 IGDALPSGTDADIAEHGKIVFDLYSGTGTIAQMLSPVAKKVIGVEIIEEAVEAAKENAQL 396
Query: 646 NGIKNCRFVCAKAEDVMGSL 665
NG+ NC F+ V+ S+
Sbjct: 397 NGLHNCEFIAGDVLKVIDSI 416
>gi|332798852|ref|YP_004460351.1| TrmA family RNA methyltransferase [Tepidanaerobacter acetatoxydans
Re1]
gi|438001891|ref|YP_007271634.1| RNA methyltransferase, TrmA family [Tepidanaerobacter acetatoxydans
Re1]
gi|332696587|gb|AEE91044.1| RNA methyltransferase, TrmA family [Tepidanaerobacter acetatoxydans
Re1]
gi|432178685|emb|CCP25658.1| RNA methyltransferase, TrmA family [Tepidanaerobacter acetatoxydans
Re1]
Length = 460
Score = 105 bits (263), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 91/368 (24%), Positives = 156/368 (42%), Gaps = 78/368 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L HM+Y QL K + + LK+ IG + ++ +G
Sbjct: 90 LQHMTYEAQLLFKTSKVKDSLKR------------------------IGHIDAEVIDTIG 125
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
YRNK ++ V AK ++G +++ + + +C I+ K I +
Sbjct: 126 MQQPWHYRNKSQYPV-----AKQGNSTVMGFYKKRSHDIVDLENCLIQHPISDKVMQIIK 180
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVM--LIAQV 484
+L + D+ +++ K+ G R + VR G EVM LIA
Sbjct: 181 RWLTRYDISIYDELKHEGLIRHVMVRVGNKS------------------KEVMAALIANG 222
Query: 485 SSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSI 544
D ++ ++ + G +L++ + +NV + + L
Sbjct: 223 KEIPHTDDLI-----KMLQCDIPG---------FKSLILNINTKKTNVIMGEKNITLYGS 268
Query: 545 PKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTL 604
P I+D I +++F +SP +FFQVN + AE LY+ ++A + D +
Sbjct: 269 P---------------YIYDYIGDIKFRLSPLSFFQVNPIQAEVLYNKVLEYAGITQDEI 313
Query: 605 LFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664
+ D+ CGTGTI L LA + GIE+ + AV+DA NA+INGI N F+ AE V+
Sbjct: 314 VLDLYCGTGTITLFLAQKAKKAYGIELVSQAVADARLNAKINGINNAEFIEGAAEAVLPK 373
Query: 665 LLKDYLNP 672
+ ++ + P
Sbjct: 374 MAEEGIKP 381
>gi|297205587|ref|ZP_06922983.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus jensenii
JV-V16]
gi|297150165|gb|EFH30462.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus jensenii
JV-V16]
Length = 481
Score = 105 bits (263), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 113/451 (25%), Positives = 185/451 (41%), Gaps = 96/451 (21%)
Query: 216 KNAVEELEGISIGNKTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASS 275
KN + ELE + + + VA++ MT+ N +A+PGE+ EA
Sbjct: 37 KNQLVELEITDLSYEAMGVAHL----------DGMTIFVN------NALPGEVVEAKILK 80
Query: 276 NGHEDGNGNDEGLAG---DGSGLKVKS-ARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLT 331
E + D +K+ + + LAH+ Y QLE K+ + +L+K
Sbjct: 81 VKKSFAFAKIENIIKQSPDRVTIKLNQWVQTGLASLAHIKYEKQLEFKRQQVINLLEKAH 140
Query: 332 RNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTV 391
N K V+ PE + GYRNK + V +++ K +
Sbjct: 141 LN--KKVNETVASPEEV-----------------------GYRNKAQVPVR-NVKGKLEI 174
Query: 392 GFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTV 451
GF + + V P + + I L+++ +P ++ KN G R L V
Sbjct: 175 GFFRKHSHDLVPMENFFTTDPEIDRVLVATRDI----LRKNHVPAYDEVKNKGEVRYLEV 230
Query: 452 REGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATA 511
R ++ S++M+I ++ +F +L K A
Sbjct: 231 RRSKAN------------------SDMMVIL---------VCLHKDFPQLVKV----ADE 259
Query: 512 SSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRF 571
S + ++++ + +NV L G P+ I D I ++RF
Sbjct: 260 ISQISGVVSVILNHNPKKTNVILGKHDYLL------AGNPQ---------IEDKIGDIRF 304
Query: 572 CISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEM 631
IS +FFQ+N+L +LY+L + A L + D G GTIGL++A V V G+E+
Sbjct: 305 KISAQSFFQINSLQTPRLYNLAIEKAGLSKKDTVIDAYSGIGTIGLSVAKHVKQVYGVEI 364
Query: 632 NASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
AV DA NA +NGI+N +VC KAE++M
Sbjct: 365 VKPAVQDARENALLNGIENAEYVCGKAEELM 395
>gi|422854537|ref|ZP_16901201.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK160]
gi|325696032|gb|EGD37923.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK160]
Length = 465
Score = 105 bits (263), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 108/412 (26%), Positives = 169/412 (41%), Gaps = 77/412 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDG----SGLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGEL + G G E L + R + L H++YS QL
Sbjct: 46 ENALPGELIRMRVLKVNKKIGFGKVEEFLRTSDQRNENLDMAYLRTGIADLGHLNYSAQL 105
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K+ + L K+ G+S ++ LP LG GYRNK
Sbjct: 106 DFKRKQVKDSLYKIA---------GLS---------DVEVLPT-----LGMEQPLGYRNK 142
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + + + + P + ++ ++ L++ DL
Sbjct: 143 AQVPVR-RVNGQLETGFFRKNSHDLLPIEDFYIQDPVIDQVIL----FTRDLLRRFDLKP 197
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
++ + +G R L VR G G E+M+I + V
Sbjct: 198 YDEQEKTGLIRNLVVRRGHYLG------------------EIMVILVTTRPKI--FRVER 237
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESND 556
E L +AF P ++Q+ N P +A I D D
Sbjct: 238 LMEHLTEAF-----------PAIKSIMQN----INDQPGNA------IFGKDWRTLYGQD 276
Query: 557 VVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIG 616
I D + F I+ AF+QVNT AEKLY D+++L D ++ D G GTIG
Sbjct: 277 Y----ITDQMLGNDFQIAAPAFYQVNTEMAEKLYQTAIDFSELTADDVVLDAYSGIGTIG 332
Query: 617 LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
L++A +V V G+E+ AV ++ +NAEIN I N +VCA AE+ + + LK+
Sbjct: 333 LSVAKQVKQVYGVEVIPEAVENSRKNAEINDITNASYVCAPAEEAIQNWLKE 384
>gi|337293768|emb|CCB91754.1| uncharacterized RNA methyltransferase pc1544 [Waddlia chondrophila
2032/99]
Length = 482
Score = 105 bits (263), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 133/300 (44%), Gaps = 28/300 (9%)
Query: 373 YRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQS 432
YRNK EFS L+ +G M+ R V ++E C + + S +++ ++S
Sbjct: 132 YRNKMEFSFSTDLEGNKYLGLMMDQGRGKVMDLQE---CHLTNPWFIETVSAVRDWWEES 188
Query: 433 DLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDA 492
+L ++ +K+ G R LTVREG G + VN++ S D A
Sbjct: 189 ELEAYHSYKDLGSLRTLTVREGIRTGDRM-----------VNLT--------VSGNPDFA 229
Query: 493 VVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPE 552
+ E P L+ + Q + P + + AD E
Sbjct: 230 LKKHHLEGFVAFVRDAIEPVDPDKRLSIFLTI--QQIKKGYPTQ--FYEMHLYGADTIRE 285
Query: 553 ESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGT 612
E + ++ + L F ISP AFFQ NTL AEKLYSL + A + + +++D+ CGT
Sbjct: 286 ELH--IQMLTEGGLEPLLFHISPAAFFQPNTLQAEKLYSLALELAQISKEQVVYDLYCGT 343
Query: 613 GTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GT+G+ A R V+G+E++ + DA NA+ N I+N + V+ + + L P
Sbjct: 344 GTLGICAAKRAKQVVGVELSPESAHDARHNAKENRIENLTILTGAVRRVLEEIKEKELFP 403
>gi|37588964|gb|AAH08067.2| TRMT2B protein [Homo sapiens]
Length = 289
Score = 105 bits (263), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 103/229 (44%), Gaps = 37/229 (16%)
Query: 440 FKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFE 499
F G+WR+LTVR M I ++ + E
Sbjct: 5 FHEGGYWRELTVRTNSQ-------------------GHTMAIITFHPQKLSQEELHVQKE 45
Query: 500 RLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVE 559
+ + F G A+ LT+L Q+ ++ + +P +LL GEP
Sbjct: 46 IVKEFFIRGPGAACG---LTSLYFQE-STMTRCSHQQSPYQLLF-----GEP-------- 88
Query: 560 ARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTL 619
I + + +L+ ISP AFFQ+NT AE LY G+ + DT+L D+CCGTG IGL+L
Sbjct: 89 -YIFEELLSLKIRISPDAFFQINTAGAEMLYRTVGELTGVNSDTILLDICCGTGVIGLSL 147
Query: 620 AHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
A V+GIE+ AV DA A NGI N F +AE ++ LLK
Sbjct: 148 AQHTSRVLGIELLEQAVEDARWTAAFNGITNSEFHTGQAEKILPGLLKS 196
>gi|422820971|ref|ZP_16869164.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK353]
gi|324991589|gb|EGC23522.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK353]
Length = 469
Score = 105 bits (262), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 110/412 (26%), Positives = 168/412 (40%), Gaps = 77/412 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDG----SGLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGEL + G G E L + R + L H++Y QL
Sbjct: 46 ENALPGELIRMRVLKVNKKIGFGKVEEFLRTSDQRNENLDMAYLRTGIADLGHLNYPAQL 105
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K+ + L K+ GVS E +P L + PL GYRNK
Sbjct: 106 DFKRKQVKDSLYKIA---------GVSDVE----------VPPTLG--MEQPL--GYRNK 142
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + + + + P + ++ ++ L++ DL
Sbjct: 143 AQVPVR-RVNGQLETGFFRKNSHDLLPIEDFYIQDPVIDQVIL----FTRDLLRRFDLKP 197
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
++ + +G R L VR G G E+M+I + V
Sbjct: 198 YDEQEKTGLIRNLVVRRGHYSG------------------EIMIILVTTRPKI--FRVEQ 237
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESND 556
E L +AF P ++Q+ N P +A I D D
Sbjct: 238 LMEHLTEAF-----------PAIKSIMQN----INDQPGNA------IFGKDWRTLYGQD 276
Query: 557 VVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIG 616
I D + F I+ AF+QVNT AEKLY D+++L D ++ D G GTIG
Sbjct: 277 Y----ITDQMLGNDFQIAAPAFYQVNTEMAEKLYQTALDFSELTADDVVIDAYSGIGTIG 332
Query: 617 LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
L++A V V G+E+ AV ++ +NAEINGI N +VCA AE+ + LK+
Sbjct: 333 LSVAKYVKQVYGVEVIPEAVENSRKNAEINGIANASYVCAPAEEAIQDWLKE 384
>gi|297620448|ref|YP_003708585.1| 23S rRNA (uracil-5-)-methyltransferase [Waddlia chondrophila WSU
86-1044]
gi|297375749|gb|ADI37579.1| 23S rRNA (Uracil-5-)-methyltransferase [Waddlia chondrophila WSU
86-1044]
Length = 482
Score = 105 bits (262), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 133/300 (44%), Gaps = 28/300 (9%)
Query: 373 YRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQS 432
YRNK EFS L+ +G M+ R V ++E C + + S +++ ++S
Sbjct: 132 YRNKMEFSFSTDLEGNKYLGLMMDQGRGKVMDLQE---CHLTNPWFIETVSAVRDWWEES 188
Query: 433 DLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDA 492
+L ++ +K+ G R LTVREG G + VN++ S D A
Sbjct: 189 ELEAYHSYKDLGSLRTLTVREGIRTGDRM-----------VNLT--------VSGNPDFA 229
Query: 493 VVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPE 552
+ E P L+ + Q + P + + AD E
Sbjct: 230 LKKHHLEGFVAFVRDAIEPVDPDKRLSIFLTI--QQIKKGYPTQ--FYEMHLYGADTIRE 285
Query: 553 ESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGT 612
E + ++ + L F ISP AFFQ NTL AEKLYSL + A + + +++D+ CGT
Sbjct: 286 ELH--IQMLTEGGLEPLLFHISPAAFFQPNTLQAEKLYSLALELAQISKEQVVYDLYCGT 343
Query: 613 GTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GT+G+ A R V+G+E++ + DA NA+ N I+N + V+ + + L P
Sbjct: 344 GTLGICAAKRAKQVVGVELSPESAHDARHNAKENRIENLTILTGAVRRVLEEIKEKELFP 403
>gi|164687720|ref|ZP_02211748.1| hypothetical protein CLOBAR_01362 [Clostridium bartlettii DSM
16795]
gi|164603494|gb|EDQ96959.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium bartlettii
DSM 16795]
Length = 453
Score = 105 bits (262), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 89/321 (27%), Positives = 142/321 (44%), Gaps = 53/321 (16%)
Query: 348 IMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEE 407
+ +S EI G + GI SP YRNK EF+ G ++ P +G ++G
Sbjct: 101 LFESHEITGF--EFLGIESSPNNTCYRNKMEFTFGNEMKDGP---LTIGMHKKGRHIDIL 155
Query: 408 PVD-CPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENL 466
VD C + + K + +EF + LP + + G+ R L VR+G
Sbjct: 156 TVDGCMLIDQDFIKILTATEEFFRAEGLPYYRGNDHKGYLRHLVVRKG------------ 203
Query: 467 EVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDH 526
+ +E+M++ V+S D + +++ + A +S
Sbjct: 204 ------IKTNEMMVMI-VTSTQLDYDM--DKYKNMLLGLDLDADLASV------------ 242
Query: 527 QGVSNVAPADAPLRLLSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTL 584
L L+ AD + V+ R I++ + LRF ISP +FFQ NTL
Sbjct: 243 ------------LHCLNDNLADAVKCDELRVLHGRDHIYEELLGLRFKISPFSFFQTNTL 290
Query: 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAE 644
AEKLYS+ ++ D +L+D+ GTGTIG L+ + V GIE+ AV A+ NA+
Sbjct: 291 GAEKLYSMAREFVGDYKDKVLYDLYSGTGTIGQVLSQKARKVYGIEIVEEAVEAANENAK 350
Query: 645 INGIKNCRFVCAKAEDVMGSL 665
+NG+ +C F+ + SL
Sbjct: 351 LNGLTHCEFIAGDVAKTVNSL 371
>gi|421498935|ref|ZP_15946002.1| RNA methyltransferase [Aeromonas media WS]
gi|407181975|gb|EKE55965.1| RNA methyltransferase [Aeromonas media WS]
Length = 447
Score = 105 bits (262), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 151/333 (45%), Gaps = 58/333 (17%)
Query: 337 ACPNGVSLPEWIMKS--REIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFM 394
A P + L + +++S ++G ++ ILG YRNK +++V S +A +GF
Sbjct: 83 AYPAQLKLKQSLVQSALEQVGLGETQVNPILGMDSPFAYRNKAQYAVRGS-EAGAEIGFY 141
Query: 395 LGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREG 454
+ + +TA DC + + + + ++++ D+ ++ ++G R L R+G
Sbjct: 142 RKHSHDLITAD----DCAVQDSLHVELNARVRGWMREHDIAAYDEVAHTGCVRNLMTRKG 197
Query: 455 RSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSP 514
G E+ + V +SE A F A A+
Sbjct: 198 FKSG--------ELMVVLVTLSE------------------------ALPFEAELLAALS 225
Query: 515 SLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVV--EARIHDSISNLRFC 572
LP+T LV + +N R+L SN V+ E I D I L F
Sbjct: 226 DLPITTLVQNINDERTN--------RILGT---------SNRVLLGEGVIRDKIHELAFE 268
Query: 573 ISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMN 632
ISP +FFQ N + LYS ++++L + +FD+ CG GTI L LA + V+GIE
Sbjct: 269 ISPLSFFQNNPSQTDVLYSKALEYSELTGNETVFDIYCGIGTISLFLAGKAAKVVGIESV 328
Query: 633 ASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
SA+SDA RNA +NGI++ F KAE +M L
Sbjct: 329 ESAISDARRNAALNGIEHTEFHVGKAEQLMPEL 361
>gi|392530283|ref|ZP_10277420.1| putative RNA methyltransferase [Carnobacterium maltaromaticum ATCC
35586]
Length = 458
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 105/409 (25%), Positives = 163/409 (39%), Gaps = 83/409 (20%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGND-EGLAGDGSGLKVKS---ARDVVTPLAHMSYSVQL 316
E+A+PGE E G G G + L S +++K R +TPL HM+Y+ QL
Sbjct: 40 ENALPGEQMEIKIHKTGKSFGYGKMMKRLTSSQSRVEIKDENYTRVGITPLQHMTYASQL 99
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPE-WIMKSREIGGLPCKLEGILGSPLVNGYRN 375
K+ + +++++ + + + E W GYRN
Sbjct: 100 VFKRQQLRNVMERIAKMPEVPVFETIGMAEPW------------------------GYRN 135
Query: 376 KCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLP 435
K + V K T GF N + + + + P + + I +EF ++
Sbjct: 136 KAQIPVRKQ-NDKLTTGFFRKNSHDLIAMEDFVIQDPKIDQAVVIVRDIMREF----NVK 190
Query: 436 VWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVN 495
+N N+G R + VR G G E+M++
Sbjct: 191 PYNEAANTGNLRHIVVRRGYHTG------------------EIMIVL------------- 219
Query: 496 SEFERLAKAFAAGAT--ASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEE 553
R K F A + +LP +IQ NV P+ ++L PE
Sbjct: 220 --VTRTNKLFPTSKILPAITEALPEVVSIIQ------NVNPSRTN-KILG-------PEN 263
Query: 554 SNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTG 613
+ D++ F IS +AF+QVN EKLY ++A+L + D CG G
Sbjct: 264 IVLWGQDYFTDTLLGNTFQISASAFYQVNPTQTEKLYQTVLEYAELTGKETVIDAYCGIG 323
Query: 614 TIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
TI L+LA V GIE+ +AV +A NA++NGI+N F AE+VM
Sbjct: 324 TISLSLAKEAKEVYGIEVVEAAVENAKNNAKLNGIENVTFEAGLAEEVM 372
>gi|304436318|ref|ZP_07396296.1| 23S rRNA (uracil-5-)-methyltransferase [Selenomonas sp. oral taxon
149 str. 67H29BP]
gi|304370723|gb|EFM24370.1| 23S rRNA (uracil-5-)-methyltransferase [Selenomonas sp. oral taxon
149 str. 67H29BP]
Length = 469
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 103/367 (28%), Positives = 144/367 (39%), Gaps = 76/367 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLP-CKLEGIL 365
L H+SY+ QL K+ + L IG LP + L
Sbjct: 97 LQHLSYAAQLRAKRQQVIDALS------------------------HIGKLPHVSVRETL 132
Query: 366 GSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF 425
+ YRNK +F VG AK + ++G F +G + + +C E A+
Sbjct: 133 AAQSPWNYRNKMQFPVGL---AKGKI--VVGCFAQGSHTIIDTENCHIQREPNNALANAV 187
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
+ Q +PV+N + G R + R G++ ++M + +
Sbjct: 188 RAIAAQLRIPVYNEDTHKGILRHIVGRVGQN-------------------GDLMAVIVTA 228
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
S A EF RL + LP V Q+ Q N LL
Sbjct: 229 SKQLPRA---KEFVRLLRE----------HLPNLVSVHQNIQTYRNNVIMGRDTVLLW-- 273
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
G+P I D + L F ISP +FFQVNT AE+LY +ADL +
Sbjct: 274 ---GKPT---------ILDGLGRLHFHISPRSFFQVNTQQAERLYEQALSYADLHGTETV 321
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
D CGTGTI L LA R V GIE+ A+ DA +NA N +KN F+ A VM +L
Sbjct: 322 IDAYCGTGTITLFLAQRARKVYGIEIVQPAILDARKNARDNHVKNAEFIVGDATKVMPAL 381
Query: 666 LKDYLNP 672
K + P
Sbjct: 382 YKQGIRP 388
>gi|422859860|ref|ZP_16906504.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK330]
gi|327470743|gb|EGF16199.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK330]
Length = 469
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 110/412 (26%), Positives = 168/412 (40%), Gaps = 77/412 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDG----SGLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGEL + G G E L + R + L H++Y QL
Sbjct: 46 ENALPGELIRMRVLKVNKKIGFGKVEEFLRTSDQRNENLDMAYLRTGIADLGHLNYPAQL 105
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K+ + L K+ GVS E +P L + PL GYRNK
Sbjct: 106 DFKRKQVKDSLYKIA---------GVSDVE----------VPPTLG--MEQPL--GYRNK 142
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + + + + P + ++ ++ L++ DL
Sbjct: 143 AQVPVR-RVNGQLETGFFRKNSHDLLPIEDFYIQDPVIDQVIL----FTRDLLRRFDLKP 197
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
++ + +G R L VR G G E+M+I + V
Sbjct: 198 YDEQEKTGLIRNLVVRRGHYSG------------------EIMIILVTTRPKI--FRVEQ 237
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESND 556
E L +AF P ++Q+ N P +A I D D
Sbjct: 238 LIEHLTEAF-----------PAIKSIMQN----INDQPGNA------IFGKDWRTLYGQD 276
Query: 557 VVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIG 616
I D + F I+ AF+QVNT AEKLY D+++L D ++ D G GTIG
Sbjct: 277 Y----ITDQMLGNDFQIAAPAFYQVNTEMAEKLYQTALDFSELTADDVVLDAYSGIGTIG 332
Query: 617 LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
L++A V V G+E+ AV ++ +NAEINGI N +VCA AE+ + LK+
Sbjct: 333 LSVAKHVKEVYGVEVIPEAVENSRKNAEINGIANASYVCAPAEEAIQDWLKE 384
>gi|392329520|ref|ZP_10274136.1| tRNA (uracil-5-)-methyltransferase [Streptococcus canis FSL Z3-227]
gi|391419392|gb|EIQ82203.1| tRNA (uracil-5-)-methyltransferase [Streptococcus canis FSL Z3-227]
Length = 453
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 104/417 (24%), Positives = 167/417 (40%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGL----AGDGSGLKVKSARDVVTPLAHMSYSVQL 316
++A+PGE+ + G G E + + + R + L H++Y QL
Sbjct: 33 DNALPGEVIDMRVLKINKNRGFGKVEAYHRLSSARNRDVNLAYLRTGIADLGHLAYEDQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K+ + L K+ G+S +E LG YRNK
Sbjct: 93 VFKQKQVQDSLYKIA---------GIS--------------DVAIESTLGMAEPLAYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF + E V + + +I C + ++ L++ D+
Sbjct: 130 AQVPVR-RVNGQLETGFFRKHSHELVPISDYYIQN---KDIDC-LINFVRDLLRRFDVKP 184
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS-ATFDDAVVN 495
+N + +G R + VR G G E+ML+ + F V+
Sbjct: 185 YNEIEQTGLLRNIVVRRGHYSG------------------EMMLVLVTTRPKVFR---VD 223
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
E++ +AF P +IQ+ + A R L
Sbjct: 224 QVIEKIVEAF-----------PEVVSIIQNINDKNTNAIFGKEFRTLY----------GR 262
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
D I D++ R+ IS +F+QVNT+ AEKLY D+++L D ++ D G GTI
Sbjct: 263 DT----ITDTMLGNRYEISAQSFYQVNTVMAEKLYQTAIDFSELSKDDVVIDAYSGIGTI 318
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL+ A V V G+E+ +AV DA +NA +NGI N FV AE+ M + KD + P
Sbjct: 319 GLSFAKTVKAVYGVEVIEAAVQDAQKNAALNGITNAHFVADTAENAMATWAKDGIKP 375
>gi|328908773|gb|AEB61054.1| tRNA (uracil-5-)-methyltransferasei-like protein, partial [Equus
caballus]
Length = 243
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 105/244 (43%), Gaps = 55/244 (22%)
Query: 425 FQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQV 484
++ FL+QS L F G+WR+LTVR S G +
Sbjct: 3 YEVFLRQSPLEPCLLFHEGGYWRELTVRTN-SQGHTM----------------------- 38
Query: 485 SSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSI 544
A++ ++L +A D ++ + +P +LL
Sbjct: 39 -------AIITFHPQKLTQALITVELGEKI----------DESTMTRCSHQQSPYQLLF- 80
Query: 545 PKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTL 604
GEP I + + L+ ISP AFFQ+NT AE LY G+ + + +T+
Sbjct: 81 ----GEPH---------IFEDLLGLKIRISPDAFFQINTSGAEMLYQTVGELSGVNSNTI 127
Query: 605 LFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664
L D+CCGTG IGL+LA V+GIE+ AV DA A NGI NC F AE ++
Sbjct: 128 LLDICCGTGVIGLSLAQYTSQVLGIELVEQAVEDARWTAAFNGITNCEFHTGWAEKILPQ 187
Query: 665 LLKD 668
LLK
Sbjct: 188 LLKS 191
>gi|225870131|ref|YP_002746078.1| RNA methyltransferase [Streptococcus equi subsp. equi 4047]
gi|225699535|emb|CAW93112.1| putative RNA methyltransferase [Streptococcus equi subsp. equi
4047]
Length = 543
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 102/416 (24%), Positives = 164/416 (39%), Gaps = 77/416 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDG----SGLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGE+ + G G E L V R + L H+ Y QL
Sbjct: 33 ENALPGEIIQMRVLKVNKNSGFGKVETYLTTSPMRQKKLDVTYLRTGIADLGHLLYPQQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K+ + L K+ A + V + E I G YRNK
Sbjct: 93 LFKQKQVQDSLYKI------AGISNVEVKETI-----------------GMEYPYAYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF + E V + + + + + ++ L++ D+
Sbjct: 130 AQVPVR-RVNGQLETGFFRKHSHELVPISDFYIQDKEIDRLI----AFTRDLLRRFDIKP 184
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
++ + SG R L VR G G E+ML+ + +N
Sbjct: 185 YDEKEQSGLIRHLVVRRGHYSG------------------EIMLVLVTTRPKIFR--INQ 224
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESND 556
+ L F A +T+++ + +NV A RL
Sbjct: 225 MIDSLVAEFPA----------ITSILQNINDKPTNVIFGKAFTRLYG------------- 261
Query: 557 VVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIG 616
+ I D+I ++CIS +F+QVNT AEKLY D+++L D ++ D G GTIG
Sbjct: 262 --KETITDTILGNQYCISAQSFYQVNTTMAEKLYQTAIDFSELTADDVVIDAYSGIGTIG 319
Query: 617 LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
L+ A V V G+E+ +AV DA +NA +NGI N +V AE+ M + ++ + P
Sbjct: 320 LSFAKEVKAVYGVEVIEAAVRDAEKNAALNGITNAYYVADSAENAMANWCQEGIKP 375
>gi|71997438|ref|NP_503353.2| Protein H24K24.4 [Caenorhabditis elegans]
gi|351064145|emb|CCD72437.1| Protein H24K24.4 [Caenorhabditis elegans]
Length = 603
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 94/305 (30%), Positives = 135/305 (44%), Gaps = 52/305 (17%)
Query: 298 KSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGL 357
K+AR+ VTPLA M Y QLE K+ + +++KL R + N V+ + R+
Sbjct: 119 KTARESVTPLAEMEYGKQLELKQQNSVGVVEKLYRQLIQ---NKVAHLGKQTQFRDRV-- 173
Query: 358 PCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEI 417
L IL +P GYRNKCEF++G+ L + VGF+ G F + V PVD VS
Sbjct: 174 ---LREILPAPKTAGYRNKCEFTIGHDLNGEICVGFVGGRFSKNQHFVIPPVDVDIVSTQ 230
Query: 418 ACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISE 477
EF+++S L +N F GFWR LT+RE +
Sbjct: 231 MMAIVGDVHEFVKESALEPFNEFDRKGFWRMLTIREFG--------------------GD 270
Query: 478 VMLIAQVSSATFDDAVVNSE--FERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPA 535
VMLI V +D V E +++ F T + ++ Q +S
Sbjct: 271 VMLIFTVFP--LEDGVERMEEIQKKIETRFLDFETFKEKKYRVCSIYWQQMVHIS----- 323
Query: 536 DAP-LRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
D P +L+ G P I++S+ + RF +SP AFFQ N+ AA LYS G
Sbjct: 324 DTPNFKLIG-----GTP---------YIYESLLDCRFRVSPPAFFQTNSQAAAVLYSTIG 369
Query: 595 DWADL 599
+ L
Sbjct: 370 EHCGL 374
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVG-----MVIGIEMNASAVSDAHRNAEINGIKN-CRFV 654
P T+L D+CCGTGTIG L + IGIEM A AV DA +NA+ N ++ C+++
Sbjct: 435 PGTILLDICCGTGTIGQCLLKNIQKSQKVCCIGIEMIAEAVEDAKQNAKQNKMETCCKYI 494
Query: 655 CAKAEDVMGSL 665
KAED S+
Sbjct: 495 AGKAEDTFRSM 505
>gi|225868865|ref|YP_002744813.1| RNA methyltransferase [Streptococcus equi subsp. zooepidemicus]
gi|225702141|emb|CAW99828.1| putative RNA methyltransferase [Streptococcus equi subsp.
zooepidemicus]
Length = 543
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 103/417 (24%), Positives = 165/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDG----SGLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGE+ + G G E L V R + L H+ Y QL
Sbjct: 33 ENALPGEIIQMRVLKVNKNSGFGKVETYLTTSPMRQKKLDVTYLRTGIADLGHLLYPQQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K+ + L K+ A + V + E I G YRNK
Sbjct: 93 LFKQKQVQDSLYKI------AGISNVEVKETI-----------------GMEYPYAYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF + E V + + + + + ++ L++ D+
Sbjct: 130 AQVPVR-RVNGQLETGFFRKHSHELVPISDFYIQDKEIDRLI----AFTRDLLRRFDIKP 184
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS-ATFDDAVVN 495
++ + SG R L VR G G E+ML+ + F +N
Sbjct: 185 YDEKEQSGLIRHLVVRRGHYSG------------------EIMLVLVTTRPKVFR---IN 223
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
+ L F A +T+++ + +NV A RL
Sbjct: 224 QMIDSLVAEFPA----------ITSILQNINDKPTNVIFGKAFTRLYG------------ 261
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
+ I D+I ++CIS +F+QVNT AEKLY D+++L D ++ D G GTI
Sbjct: 262 ---KETITDTILGNQYCISAQSFYQVNTTMAEKLYQTAIDFSELTADDVVIDAYSGIGTI 318
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL+ A V V G+E+ +AV DA +NA +NGI N +V AE+ M + ++ + P
Sbjct: 319 GLSFAKEVKAVYGVEVIEAAVRDAEKNAALNGITNAYYVADSAENAMANWCQEGIKP 375
>gi|343525700|ref|ZP_08762655.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
constellatus subsp. pharyngis SK1060 = CCUG 46377]
gi|343395970|gb|EGV08508.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
constellatus subsp. pharyngis SK1060 = CCUG 46377]
Length = 464
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 101/374 (27%), Positives = 153/374 (40%), Gaps = 77/374 (20%)
Query: 301 RDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLP-C 359
R + L H+SY QL K+ + L K I GL
Sbjct: 5 RTGIADLGHLSYPSQLAFKRKQVKDSLYK------------------------IAGLSNV 40
Query: 360 KLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIAC 419
++ LG GYRNK + V + + GF N + + + + P + ++
Sbjct: 41 EVSPTLGMERPLGYRNKAQVPVR-RVNGQLETGFFRKNSHDLLPIEDFYIQDPVIDQVIL 99
Query: 420 KYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVM 479
++ L++ DL ++ + +G R L VR G G E+M
Sbjct: 100 ----FTRDLLRRFDLKPYDEQEKTGLIRNLVVRRGHYSG------------------EIM 137
Query: 480 LI-AQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAP 538
+I S F V ERL +AF P++ I D +N
Sbjct: 138 VILVTTRSKIFR---VEQLIERLVEAF--------PAIESIMQNINDQN--TN------- 177
Query: 539 LRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWAD 598
+I D + D I D + N F I+ AF+QVNT AEKLY D+++
Sbjct: 178 ----TIFGKDWQTLHGRDY----ITDRMLNNDFQIAAPAFYQVNTEMAEKLYQTAIDFSE 229
Query: 599 LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658
L D ++ D G GTIGL++A +V V G+E+ AV ++ +NAEINGI N +VC A
Sbjct: 230 LAADDVVLDAYSGIGTIGLSVAKQVKQVYGVEVIPEAVENSQKNAEINGITNTHYVCDSA 289
Query: 659 EDVMGSLLKDYLNP 672
E+ M + K + P
Sbjct: 290 ENAMANWSKQDIKP 303
>gi|295092515|emb|CBK78622.1| 23S rRNA m(5)U-1939 methyltransferase [Clostridium cf.
saccharolyticum K10]
Length = 475
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 92/364 (25%), Positives = 154/364 (42%), Gaps = 67/364 (18%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEW-----IMKSREIGGLPCKL 361
+ ++Y QL K+ + LK++ +G+ LPE + + + G ++
Sbjct: 82 MQAVAYEEQLRFKERKVYNNLKRI------GGLSGLLLPEEKGQENLEGTEKKRGETVRM 135
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKY 421
E I+G YRNK +F G + GF G + E DC E +
Sbjct: 136 EPIIGMEEPWRYRNKAQFPFGRDKDGRIIAGFYAGR----THCIVENEDCLLGVEENREI 191
Query: 422 ASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKP---LDVENLEVNISEVNISEV 478
I + F+ + + +N + G R + +R+G G+ L + E+ E+ + +
Sbjct: 192 LDIIRNFMNEYKIEPYNEELHRGLVRHVLIRKGFRTGELMVCLILNGTELPKKEILVERL 251
Query: 479 MLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAP 538
+ IA ++S +F+ +N E VI + V+ P
Sbjct: 252 LKIAGMTSISFN---INRE---------------------KTNVILGKEIVNLYGPG--- 284
Query: 539 LRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWAD 598
I D I N+++ ISP +F+QVN + E+LY ++A
Sbjct: 285 ----------------------YITDYIGNVKYRISPLSFYQVNPVQTERLYGTALEYAG 322
Query: 599 LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658
L D ++D+ CG GTI L LA + V G+E+ A+ DA NAEING++N F KA
Sbjct: 323 LTGDETVWDLYCGIGTISLFLAQKAKQVYGVEIVPQAIDDARGNAEINGMENVEFFVGKA 382
Query: 659 EDVM 662
E+V+
Sbjct: 383 EEVL 386
>gi|377809949|ref|YP_005005170.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pediococcus claussenii
ATCC BAA-344]
gi|361056690|gb|AEV95494.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pediococcus claussenii
ATCC BAA-344]
Length = 454
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 96/397 (24%), Positives = 152/397 (38%), Gaps = 89/397 (22%)
Query: 266 GELAEAHASSNGHEDGNGNDEGLAGDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQ 325
G + E SS DG G + G + PL ++ Y QL K++ I
Sbjct: 60 GRVLEVLQSSPDRVDGLGKEYTQTG-------------IAPLQYLRYDAQLLFKQHQIEN 106
Query: 326 MLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSL 385
+LKK N G+ P GYRNK + V ++
Sbjct: 107 LLKKSHLNIHVDNTIGMDEPY-------------------------GYRNKAQIPVR-TV 140
Query: 386 QAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGF 445
+ GF N + V + + + ++ K ++ L+ + + + + G
Sbjct: 141 AEQLETGFFKRNSHDLVPIEDFRIQDTVIDDVIVK----VRDILRANQVVPYEEVNHQGI 196
Query: 446 WRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAF 505
R + VR GR G E+M++ + F ++ +++
Sbjct: 197 IRNVMVRRGRKSG------------------EIMVVLITNKEQFPNS------DQVFNEI 232
Query: 506 AAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDS 565
AA S + V G N+ + +P+ IHD
Sbjct: 233 AAINNVVSVYQNINNRVTNVMMGDKNILKSGSPV----------------------IHDQ 270
Query: 566 ISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGM 625
+ + F ISP++F+QVN + EKLY L D A L + + D+ CG GTI L +A
Sbjct: 271 LLGINFIISPSSFYQVNPVQTEKLYQLAIDKAGLTGNETVLDLYCGIGTISLAMAKHAKR 330
Query: 626 VIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
V+G+E+ A+ DA NA+ NGI N FV KAED M
Sbjct: 331 VMGVEVVPEAIHDAKMNAQSNGIDNVEFVINKAEDQM 367
>gi|225568809|ref|ZP_03777834.1| hypothetical protein CLOHYLEM_04888 [Clostridium hylemonae DSM
15053]
gi|225162308|gb|EEG74927.1| hypothetical protein CLOHYLEM_04888 [Clostridium hylemonae DSM
15053]
Length = 460
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 137/309 (44%), Gaps = 51/309 (16%)
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFM--LGNFREGVTAVEEPVDCPNVSEIAC 419
EGI SP YRNK EFS G + P M G+F + V DC V E
Sbjct: 115 EGIKPSPARQEYRNKMEFSFGDEYKDGPLALGMHKRGSFHDIVNVA----DCRIVDEDYR 170
Query: 420 KYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVM 479
K + + ++S LP ++R K++GF+R L VR+ VN E+
Sbjct: 171 KILACTLDCAKKSGLPYYHRMKHTGFFRHLLVRKA------------------VNTGEI- 211
Query: 480 LIAQVSSATFDDAVVNSEFER-LAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAP 538
LI V++ +D FE + + AG LPL + G+ +
Sbjct: 212 LIDIVTTTEYD-------FESGFGQEYWAGQLLD---LPLDGKI----AGILHTKNDSV- 256
Query: 539 LRLLSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDW 596
AD +E D++ + ++ + ++F I+P +FFQ N+L AE LY + +
Sbjct: 257 --------ADVVKDEGTDIIYGQDCFYEELLGMKFKITPFSFFQTNSLGAEVLYEMARTY 308
Query: 597 ADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCA 656
D ++FD+ GTGTI LA V+G+E+ AV+ A NA++NG+ NC F
Sbjct: 309 IGDTKDKVIFDLYSGTGTIAQILAPVAKRVVGVEIVEEAVAAAKENAKLNGLDNCTFWSG 368
Query: 657 KAEDVMGSL 665
V+ L
Sbjct: 369 DVLKVIDEL 377
>gi|268318102|ref|YP_003291821.1| TrmA family RNA methyltransferase [Rhodothermus marinus DSM 4252]
gi|262335636|gb|ACY49433.1| RNA methyltransferase, TrmA family [Rhodothermus marinus DSM 4252]
Length = 466
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 105/369 (28%), Positives = 153/369 (41%), Gaps = 88/369 (23%)
Query: 309 HMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLP-CKLEGILGS 367
H+ Y QLE K+ S+ + L GG ++ L S
Sbjct: 85 HVRYEAQLEAKRQSVYEALVHH------------------------GGFEDVEVRPTLPS 120
Query: 368 PLVNGYRNKCEFSV-------------GYSLQAKPTVGFML-GNFREGVTAVEEPVDCPN 413
P + GYRNK EFS G L VG + GNF + V +EE C
Sbjct: 121 PRLYGYRNKMEFSFSADRWLTPEEIASGRPLDRHFAVGLHVPGNFYK-VIDLEE---CHL 176
Query: 414 VSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEV 473
I + + + F + W+ ++ G+ R L +R G G
Sbjct: 177 PEPITVRLLNELRAFFKAKGWEPWDIRRHEGYLRHLVIRTGTRTG--------------- 221
Query: 474 NISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVA 533
EVM+ + ++ +D+A R+A+ GA +T LV + + V+
Sbjct: 222 ---EVMV--NLVTSRYDEA-------RMAEL---GAFLQEQFPEVTTLVNTINSRPAQVS 266
Query: 534 PADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLG 593
+A + IHD I RF I+P AFFQ NT AE+LY +
Sbjct: 267 YGEATYTIFG---------------PGVIHDCIGPFRFEIAPDAFFQTNTEQAERLYEVA 311
Query: 594 GDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRF 653
+ A L PD L++D+ CGTGTI + +A V V+G+E+ ASAV +A NA NGI NC F
Sbjct: 312 RELAALRPDDLVYDLYCGTGTISIFIAPHVRHVVGVELVASAVENARANAAANGITNCTF 371
Query: 654 VCAKAEDVM 662
V +V+
Sbjct: 372 VAGDLLEVL 380
>gi|82595216|ref|XP_725756.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23480877|gb|EAA17321.1| unnamed protein product [Plasmodium yoelii yoelii]
Length = 732
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 106/469 (22%), Positives = 178/469 (37%), Gaps = 144/469 (30%)
Query: 296 KVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIG 355
KVKS + VTPL Y Q++ K + + ++ N + +W+ ++ G
Sbjct: 225 KVKSIENYVTPLYKYKYEEQIKIKNKFLGKCKDQILNNLKN---------KWMKQNLVFG 275
Query: 356 GL----------------------------PCKLEGILG-------SPL------VNGYR 374
L C LE L SPL +NGYR
Sbjct: 276 ELNLNTSIENDENDDKFQINDMQTFNDDNNECSLEEKLKKYNFQIDSPLYPSDKNINGYR 335
Query: 375 NKCEFSVGYSLQAKPTVGFMLG---------------NFREG-VTAVEEPV--------- 409
NKCEF++ Y +GF++G NF E ++ + PV
Sbjct: 336 NKCEFTISYDENNNVEIGFVVGKVKTNMNETNDDNNCNFSENNISNNQSPVNESHQTKLR 395
Query: 410 ------------------DCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTV 451
DC ++ + + ++ S+ PV++R +G WR L +
Sbjct: 396 NKKQKQCYFLNPIVKSIDDCIHIHSCMKEVVKEMKSIIKDSNYPVFDRVYKTGIWRLLVI 455
Query: 452 REGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATA 511
R E+M+ Q S D E +RL
Sbjct: 456 RLNSKK-------------------ELMITVQTYSL---DQKKKREIKRLLINRLTKKKD 493
Query: 512 SS----PSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIH--DS 565
S + + +L +Q+H G SN D + N+ + H +
Sbjct: 494 ESYIEFSNFKVVSLYLQEH-GNSN----------------DSTNQSENEHLWGVEHLEEI 536
Query: 566 ISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPD--TLLFDVCCGTGTIGLTLA--- 620
I +F I+P+ FFQVN + E LY D+ ++ + +FD+CCGTGTI + +A
Sbjct: 537 ILGNKFLITPSCFFQVNHTSCEILYKKVIDYVNINKNMKNYIFDLCCGTGTISICIANAL 596
Query: 621 -HRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
H ++GI++ ++ A++NA+IN IKN +F+ + E++ +K+
Sbjct: 597 KHEDMHIVGIDICEESIISANQNAQINKIKNYKFIKGRVEELFAGEIKN 645
>gi|282892425|ref|ZP_06300775.1| hypothetical protein pah_c253o052 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338176544|ref|YP_004653354.1| RNA methyltransferase pc1544 [Parachlamydia acanthamoebae UV-7]
gi|281497827|gb|EFB40188.1| hypothetical protein pah_c253o052 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336480902|emb|CCB87500.1| uncharacterized RNA methyltransferase pc1544 [Parachlamydia
acanthamoebae UV-7]
Length = 484
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 136/303 (44%), Gaps = 32/303 (10%)
Query: 373 YRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQS 432
YRNK EFS L +G ++ + R V + E C + + + + + S
Sbjct: 133 YRNKMEFSFSTDLSQNKYLGLIMDSSRGKVFNLTE---CHLTNSWFVDALKVTRNWWESS 189
Query: 433 DLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDA 492
L ++ ++N+G R LT+REG+ G + M+I VS D A
Sbjct: 190 KLDAYHHYRNTGSLRTLTLREGQRTG------------------DRMVILTVSGNP-DYA 230
Query: 493 VVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPE 552
+ ++ + A P L+ + ++ HQ +A + L P+
Sbjct: 231 LHKNDLDAFVAGLRASIELDRPECRLS-IFLRIHQIAKGMASQFYEMVLYG-------PD 282
Query: 553 ESND--VVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCC 610
+ + ++++ + L F ISP+AFFQ NT AE+LYSL + + ++D+ C
Sbjct: 283 QIREKLYIQSQSEEQPVPLEFNISPSAFFQPNTRQAERLYSLALQLSSISTPITVYDLYC 342
Query: 611 GTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYL 670
GTGT+ + L+ V+G+E+ AV DA NA NG N F+C + + ++++ L
Sbjct: 343 GTGTLSICLSKFAKTVVGVEICPEAVLDARSNAAKNGCSNVHFLCGAVHEQLTKIIEENL 402
Query: 671 NPL 673
PL
Sbjct: 403 FPL 405
>gi|423068264|ref|ZP_17057052.1| hypothetical protein HMPREF9682_00273 [Streptococcus intermedius
F0395]
gi|355367155|gb|EHG14868.1| hypothetical protein HMPREF9682_00273 [Streptococcus intermedius
F0395]
Length = 451
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 102/380 (26%), Positives = 155/380 (40%), Gaps = 77/380 (20%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L + R + L H+SY QL K+ + L K I
Sbjct: 71 LDMAYLRTGIADLGHLSYPSQLAFKRKQVKDSLYK------------------------I 106
Query: 355 GGLP-CKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPN 413
GL ++ LG GYRNK + V + + GF N + + + + P
Sbjct: 107 AGLSNVEVSPTLGMEQPLGYRNKAQVPVR-RVNGQLETGFFRKNSHDLLPIEDFYIQDPV 165
Query: 414 VSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEV 473
+ ++ ++ L++ DL ++ + +G R L VR G G
Sbjct: 166 IDQVIL----FTRDLLRRFDLKPYDEQEKTGLIRNLVVRRGHYSG--------------- 206
Query: 474 NISEVMLI-AQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNV 532
E+M+I S F V ERL +AF P++ I D +N
Sbjct: 207 ---EIMVILVTTRSKIFR---VEQLIERLVEAF--------PAIESIMQNINDQN--TN- 249
Query: 533 APADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSL 592
+I D + D I D + N F I+ AF+QVNT AEKLY
Sbjct: 250 ----------TIFGKDWQTLHGRDY----ITDRMLNNDFQIAAPAFYQVNTEMAEKLYQT 295
Query: 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCR 652
D+++L D ++ D G GTIGL++A +V V G+E+ AV ++ +NAEINGI N
Sbjct: 296 AIDFSELAADDVVLDAYSGIGTIGLSVAKQVKQVYGVEVIPEAVENSQKNAEINGITNTH 355
Query: 653 FVCAKAEDVMGSLLKDYLNP 672
+VC AE+ M + K + P
Sbjct: 356 YVCDSAENAMANWSKQDIKP 375
>gi|422883897|ref|ZP_16930346.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK49]
gi|332361995|gb|EGJ39797.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK49]
Length = 466
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 104/412 (25%), Positives = 167/412 (40%), Gaps = 77/412 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDG----SGLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGEL + G G E L + R + L H++Y QL
Sbjct: 46 ENALPGELIRMRVLKVNKKIGFGKVEEFLRTSDQRNENLDMAYLRTGIADLGHLNYPAQL 105
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K+ + L K+ + P + + + PL GYRNK
Sbjct: 106 DFKRKQVKDSLYKIAGLSDVEVPPTLGMEQ---------------------PL--GYRNK 142
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + + + + P + ++ ++ L++ DL
Sbjct: 143 AQVPVR-RVNGQLETGFFRKNSHDLLPIEDFYIQDPVIDQVIL----FTRDLLRRFDLKP 197
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
++ + +G R L VR G G E+M+I + V
Sbjct: 198 YDEQEKTGLIRNLVVRRGHYSG------------------EIMVILVTTRPKI--FRVEQ 237
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESND 556
ERL +AF P ++Q+ N P +A I D +
Sbjct: 238 LMERLTEAF-----------PAIKSIMQN----INDQPGNA------IFGKDWRTLYGQN 276
Query: 557 VVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIG 616
I D + F I+ AF+QVNT AEKLY D+++L D ++ D G GTIG
Sbjct: 277 Y----ITDQMLGNDFQIAAPAFYQVNTEMAEKLYQTAIDFSELTADDVVLDAYSGIGTIG 332
Query: 617 LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
L++A +V V G+E+ AV ++ +NA INGI N +VCA AE+ + + LK+
Sbjct: 333 LSVAKQVKQVYGVEVIPEAVENSQKNAAINGITNASYVCAPAEEAIQNWLKE 384
>gi|414084845|ref|YP_006993556.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Carnobacterium
maltaromaticum LMA28]
gi|412998432|emb|CCO12241.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Carnobacterium
maltaromaticum LMA28]
Length = 434
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 105/409 (25%), Positives = 164/409 (40%), Gaps = 83/409 (20%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGND-EGLAGDGSGLKVK---SARDVVTPLAHMSYSVQL 316
E+A+PGE E G G G + L S +++K R +TPL HM+Y+ QL
Sbjct: 14 ENALPGEQMEIKIHKTGKSFGYGKMMKRLTSSQSRVEIKDENYTRVGITPLQHMTYASQL 73
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPE-WIMKSREIGGLPCKLEGILGSPLVNGYRN 375
K+ + +++++ + + + E W GYRN
Sbjct: 74 VFKRQQLRNVMERIAKMPEVPVFETIGMAEPW------------------------GYRN 109
Query: 376 KCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLP 435
K + V K T GF N + + + + P + + I +EF ++
Sbjct: 110 KAQIPVRKQ-NDKLTTGFFRKNSHDLIAMEDFVIQDPKIDQAVVIVRDIMREF----NVK 164
Query: 436 VWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVN 495
+N +N+G R + VR G G E+M++
Sbjct: 165 PYNEAENTGNLRHIVVRRGYHTG------------------EIMIVL------------- 193
Query: 496 SEFERLAKAFAAGAT--ASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEE 553
R K F A + +LP +IQ NV P+ ++L PE
Sbjct: 194 --VTRTNKLFPTSKILPAITEALPEVVSIIQ------NVNPSRTN-KILG-------PEN 237
Query: 554 SNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTG 613
+ D++ F IS +AF+QVN EKLY ++A+L + D CG G
Sbjct: 238 IVLWGQDYFTDTLLGNTFQISASAFYQVNPTQTEKLYQTVLEYAELTGKETVIDAYCGIG 297
Query: 614 TIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
TI L+LA V GIE+ +AV +A NA++NGI+N F AE+VM
Sbjct: 298 TISLSLAKEAKEVYGIEVVEAAVENAKNNAKLNGIENVTFEAGLAEEVM 346
>gi|379727788|ref|YP_005319973.1| TrmA family RNA methyltransferase [Melissococcus plutonius DAT561]
gi|376318691|dbj|BAL62478.1| TrmA family RNA methyltransferase [Melissococcus plutonius DAT561]
Length = 460
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 99/407 (24%), Positives = 168/407 (41%), Gaps = 79/407 (19%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGND---EGLAGDGSGLKVKSARDV-VTPLAHMSYSVQL 316
E+++PGE+ + G++ G + ++ + LK + PL HMSY QL
Sbjct: 37 ENSLPGEIVDILIVKVGNKFAFGKVIEWQKISPERRDLKNYVLLQTGIAPLQHMSYGEQL 96
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K+ + ++KK+ + P+ LP +G + GYRNK
Sbjct: 97 LFKQKQVKNVMKKIAK-----LPDTPVLPT------------------IGMAVPKGYRNK 133
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ + + GF N E + + + P + + + ++ L++ +
Sbjct: 134 AQIP-ARKVDNQLETGFFRKNSHELIPIQDFYIQDPKIDQAIL----VIRDILRRFQVKP 188
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
+N +++G RQ+ +R G E+M+I + +
Sbjct: 189 YNEQEHTGNLRQIIIRRGHYS------------------HEMMVILVTRTKKLFNH---- 226
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLLSIPKADGEPEESN 555
E+L K LP T +IQ+ + +NV + + L P
Sbjct: 227 --EQLVKEIMQ-------KLPETVSIIQNINPDKTNVIMGEESILLYGNP---------- 267
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
I+D + + IS +F+QVNT E LY ++A+L P + D CG GTI
Sbjct: 268 -----YINDQLLGKNYHISAASFYQVNTEQTEYLYKTAIEFAELSPTDQVVDAYCGIGTI 322
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
L+LA +V V G+E+ +A+ DA NA IN I+NC F KAE+VM
Sbjct: 323 ALSLAEQVKHVYGVEIIEAAILDARENAAINQIENCTFKIGKAEEVM 369
>gi|291547098|emb|CBL20206.1| 23S rRNA m(5)U-1939 methyltransferase [Ruminococcus sp. SR1/5]
Length = 484
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 95/357 (26%), Positives = 152/357 (42%), Gaps = 57/357 (15%)
Query: 310 MSYSVQLEHKKNSIAQMLKKLTRNA-RKACPNGVSLPEWIMKSREIGGLPCKLEGILGSP 368
MSY Q E K+ + ++L + + K NG E E +GI GSP
Sbjct: 44 MSYEAQKEMKERQVRELLDGAVKESLAKIGKNGDGTEEA-----EAADHLYHWDGIYGSP 98
Query: 369 LVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTA-VEEPVDCPNVSEIACKYASIFQE 427
+ GYRNK EFS G + P LG ++G T + DC V K +E
Sbjct: 99 IEFGYRNKMEFSFGDEYKDGP---LSLGLHKKGSTYDILNTDDCKLVHPDMTKILVCVRE 155
Query: 428 FLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSA 487
F + + + + ++ G+ R L +R G + G+ ++ V +
Sbjct: 156 FFLERNASFYKKLQHVGYLRHLLLRRGVTSGE--------------------ILVHVVTT 195
Query: 488 TFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKA 547
T ++ + E L + A LPL ++ G+ + +L+ +
Sbjct: 196 TQEE----YDLEPLKEQLLA--------LPLEGKIV----GI---------MHILNDSLS 230
Query: 548 DGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
D + ++ + ++ + L+F IS +FFQ N+LAAE LYS ++ D ++
Sbjct: 231 DVVQSDETKILYGKDYFYEELLGLKFKISTFSFFQPNSLAAEILYSKVREYVGDTRDKVV 290
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
FD+ GTGTI A VIG+E+ AV A NA +NGI NCRF+ V+
Sbjct: 291 FDLYSGTGTIAQLAASVASEVIGVEIVEDAVKAARENAALNGIDNCRFIAGDVLKVL 347
>gi|254974048|ref|ZP_05270520.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
QCD-66c26]
gi|255091449|ref|ZP_05320927.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
CIP 107932]
gi|255313180|ref|ZP_05354763.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
QCD-76w55]
gi|255515867|ref|ZP_05383543.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
QCD-97b34]
gi|255648960|ref|ZP_05395862.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
QCD-37x79]
gi|306519078|ref|ZP_07405425.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium difficile
QCD-32g58]
gi|384359715|ref|YP_006197567.1| putative tRNA (uracil-5-)-methyltransferase [Clostridium difficile
BI1]
Length = 451
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 135/308 (43%), Gaps = 55/308 (17%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREG----VTAVEEPVDCPNVSEIA 418
GI GSP YRNK E++ G ++ P LG ++G + VEE C V E
Sbjct: 114 GIEGSPENKYYRNKMEYTFGDEVKNGP---LTLGLHKKGKHIDIQTVEE---CMLVDEDF 167
Query: 419 CKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEV 478
K EF + LP + + G+ R L VR+G ++ +E+
Sbjct: 168 SKILVSSVEFFNEKKLPYYRTMNHKGYLRHLVVRKG------------------IHTNEI 209
Query: 479 ML-IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADA 537
M+ I S FD +EF+ + A L ++ + G+++ D
Sbjct: 210 MVNIVTSSQEDFD----MNEFKDMLLGIDLKA-------ELVGVLHTINDGLADAVQCD- 257
Query: 538 PLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWA 597
LR+L D I + I L+F ISP +FFQ NT AE LYS+ D+
Sbjct: 258 ELRVLY----------GRD----YIQEEILGLKFKISPFSFFQTNTKGAEVLYSIARDFI 303
Query: 598 DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAK 657
D ++FD+ GTG+IG +A V GIE+ AV A+ NA++NG+ NC F+
Sbjct: 304 GDYNDKVVFDLYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGD 363
Query: 658 AEDVMGSL 665
V+ L
Sbjct: 364 VAKVVKDL 371
>gi|418965024|ref|ZP_13516811.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
constellatus subsp. constellatus SK53]
gi|383343857|gb|EID22029.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
constellatus subsp. constellatus SK53]
Length = 461
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 102/380 (26%), Positives = 155/380 (40%), Gaps = 77/380 (20%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L + R + L H+SY QL K+ + L K I
Sbjct: 80 LDMAYLRTGIADLGHLSYPSQLAFKRKQVKDSLYK------------------------I 115
Query: 355 GGLP-CKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPN 413
GL ++ LG GYRNK + V + + GF N + + + + P
Sbjct: 116 AGLSNVEVSPTLGMEQPLGYRNKAQVPVR-RVNGQLETGFFRKNSHDLLPIEDFYIQDPV 174
Query: 414 VSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEV 473
+ ++ ++ L++ DL ++ + +G R L VR G G
Sbjct: 175 IDQVIL----FTRDLLRRFDLKPYDEQEKTGLIRNLVVRRGHYSG--------------- 215
Query: 474 NISEVMLI-AQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNV 532
E+M+I S F V ERL +AF P++ I D +N
Sbjct: 216 ---EIMVILVTTRSKIFR---VEQLIERLVEAF--------PAIESIMQNINDQN--TN- 258
Query: 533 APADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSL 592
+I D + D I D + N F I+ AF+QVNT AEKLY
Sbjct: 259 ----------TIFGKDWQTLHGRDY----ITDRMLNNDFQIAAPAFYQVNTEMAEKLYQT 304
Query: 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCR 652
D+++L D ++ D G GTIGL++A +V V G+E+ AV ++ +NAEINGI N
Sbjct: 305 AIDFSELAADDVVLDAYSGIGTIGLSVAKQVKQVYGVEVIPEAVENSQKNAEINGITNTH 364
Query: 653 FVCAKAEDVMGSLLKDYLNP 672
+VC AE+ M + K + P
Sbjct: 365 YVCDSAENAMANWSKQGIKP 384
>gi|345018106|ref|YP_004820459.1| TrmA family RNA methyltransferase [Thermoanaerobacter wiegelii
Rt8.B1]
gi|344033449|gb|AEM79175.1| RNA methyltransferase, TrmA family [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 455
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/360 (25%), Positives = 147/360 (40%), Gaps = 75/360 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H+SY QL++K + L++ IG + ++ +G
Sbjct: 85 LQHLSYEGQLKYKTQKVKDNLER------------------------IGKVYTRVHDTIG 120
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVD-CPNVSEIACKYASIF 425
YRNK +F VG GF + V PV+ C EI+ + A I
Sbjct: 121 MEKPQRYRNKAQFPVGMVEGKAAVTGFYAPRSHDIV-----PVESCMIQHEISDEIARIV 175
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
+ ++++ ++ V++ G R + R G+ + V ++
Sbjct: 176 RNWIRKYNISVYDEKTGKGLIRHIVTRVAFKTGEVMAV----------------IVINGK 219
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
+ ++++ E + L ++VI + +NV + + +
Sbjct: 220 DIQYKKQLIDALKEEIR--------------GLKSVVININTKKTNVIMGEENITIYG-- 263
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
S++++ D I +++F ISP +FFQVN + E LY ++ADL + +
Sbjct: 264 --------SDNII-----DYIKDIKFEISPLSFFQVNPVQTEVLYGKALEYADLKGEETV 310
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
DV CG GTI L A + V GIE AV DA RNA INGIKN F+ AE VM L
Sbjct: 311 IDVYCGIGTISLFAAQKAAFVYGIEAVHQAVEDAKRNAYINGIKNVEFISGDAEKVMPEL 370
>gi|397649484|ref|YP_006490011.1| RNA methyltransferase [Streptococcus mutans GS-5]
gi|392603053|gb|AFM81217.1| RNA methyltransferase [Streptococcus mutans GS-5]
Length = 454
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 154/378 (40%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L V R + L H++Y QL K+ + L K+ G+S
Sbjct: 71 LTVDYLRTGIADLGHLTYGQQLNFKRKQVINSLSKIA---------GIS----------- 110
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
++ LG YRNK + V + + GF FR+ A+ D
Sbjct: 111 ---DIEVADTLGMDNPTAYRNKAQVPVR-RVNGQLETGF----FRKNSHALMPIEDYYIQ 162
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+ + + ++ L++ DL ++ + +G R L VR G G+ +
Sbjct: 163 DKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYTGQIM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++ S F + E++ F P +IQ+ + A
Sbjct: 210 ----LVLVTTRSKIFR---IEQMIEKIVSEF-----------PAVKSIIQNINDRNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
+ R L GE D +E D++ R+ IS +F+QVNT+ AEKLY
Sbjct: 252 FGSEFRTLY-----GE-----DTIE----DTMLGNRYIISAQSFYQVNTVMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D++DL PD + D G GTIGL+ A +V +V G+E+ +AV DA +NA +N I N +V
Sbjct: 298 DFSDLTPDDTVIDAYSGIGTIGLSFAKKVKVVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
AE M S K + P
Sbjct: 358 ADSAEKAMASWSKRGIKP 375
>gi|450087446|ref|ZP_21854274.1| putative RNA methyltransferase [Streptococcus mutans NV1996]
gi|449217874|gb|EMC17901.1| putative RNA methyltransferase [Streptococcus mutans NV1996]
Length = 453
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 154/378 (40%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L V R + L H++Y QL K+ + L K+ G+S
Sbjct: 71 LTVDYLRTGIADLGHLTYGQQLNFKRKQVINSLSKIA---------GIS----------- 110
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
++ LG YRNK + V + + GF FR+ A+ D
Sbjct: 111 ---DIEVADTLGMDNPTAYRNKTQVPVR-RVNGQLETGF----FRKNSHALMPIEDYYIQ 162
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+ + + ++ L++ DL ++ + +G R L VR G G+ +
Sbjct: 163 DKDIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYTGQIM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++ S F + E++ F P +IQ+ + A
Sbjct: 210 ----LVLVTTRSKIFR---IEQMIEKIVSEF-----------PAVKSIIQNINDRNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
+ R L GE D +E D++ R+ IS +F+QVNT+ AEKLY
Sbjct: 252 FGSEFRTLY-----GE-----DTIE----DTMLGNRYIISAQSFYQVNTVMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D++DL PD + D G GTIGL+ A +V +V G+E+ +AV DA +NA +N I N +V
Sbjct: 298 DFSDLTPDDTVIDAYSGIGTIGLSFAKKVKVVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
AE M S K + P
Sbjct: 358 ADSAEKAMASWSKRGIKP 375
>gi|260685752|ref|YP_003216885.1| tRNA (Uracil-5-)-methyltransferase [Clostridium difficile R20291]
gi|260211768|emb|CBE02120.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
R20291]
Length = 453
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 135/308 (43%), Gaps = 55/308 (17%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREG----VTAVEEPVDCPNVSEIA 418
GI GSP YRNK E++ G ++ P LG ++G + VEE C V E
Sbjct: 116 GIEGSPENKYYRNKMEYTFGDEVKNGP---LTLGLHKKGKHIDIQTVEE---CMLVDEDF 169
Query: 419 CKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEV 478
K EF + LP + + G+ R L VR+G ++ +E+
Sbjct: 170 SKILVSSVEFFNEKKLPYYRTMNHKGYLRHLVVRKG------------------IHTNEI 211
Query: 479 ML-IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADA 537
M+ I S FD +EF+ + A L ++ + G+++ D
Sbjct: 212 MVNIVTSSQEDFD----MNEFKDMLLGIDLKA-------ELVGVLHTINDGLADAVQCD- 259
Query: 538 PLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWA 597
LR+L D I + I L+F ISP +FFQ NT AE LYS+ D+
Sbjct: 260 ELRVLY----------GRD----YIQEEILGLKFKISPFSFFQTNTKGAEVLYSIARDFI 305
Query: 598 DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAK 657
D ++FD+ GTG+IG +A V GIE+ AV A+ NA++NG+ NC F+
Sbjct: 306 GDYNDKVVFDLYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGD 365
Query: 658 AEDVMGSL 665
V+ L
Sbjct: 366 VAKVVKDL 373
>gi|449996741|ref|ZP_21823716.1| putative RNA methyltransferase [Streptococcus mutans A9]
gi|449182769|gb|EMB84780.1| putative RNA methyltransferase [Streptococcus mutans A9]
Length = 454
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 154/378 (40%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L V R + L H++Y QL K+ + L K+ G+S
Sbjct: 71 LTVDYLRTGIADLGHLTYGQQLNFKRKQVINSLSKIA---------GIS----------- 110
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
++ LG YRNK + V + + GF FR+ A+ D
Sbjct: 111 ---DIEVADTLGMDNPTAYRNKAQVPVR-RVNGQLETGF----FRKNSHALMPIEDYYIQ 162
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+ + + ++ L++ DL ++ + +G R L VR G G+ +
Sbjct: 163 DKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYTGQIM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++ S F + E++ F P +IQ+ + A
Sbjct: 210 ----LVLVTTRSKIFR---IEQMIEKIVSEF-----------PAVKSIIQNINDRNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
+ R L GE D +E D++ R+ IS +F+QVNT+ AEKLY
Sbjct: 252 FGSEFRTLY-----GE-----DTIE----DTMLGNRYIISAQSFYQVNTVMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D++DL PD + D G GTIGL+ A +V +V G+E+ +AV DA +NA +N I N +V
Sbjct: 298 DFSDLTPDDTVIDAYSGIGTIGLSFAKKVKVVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
AE M S K + P
Sbjct: 358 ADSAEKAMASWSKRGIKP 375
>gi|167037107|ref|YP_001664685.1| RNA methyltransferase [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|320115522|ref|YP_004185681.1| TrmA family RNA methyltransferase [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|166855941|gb|ABY94349.1| RNA methyltransferase, TrmA family [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319928613|gb|ADV79298.1| RNA methyltransferase, TrmA family [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 460
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/361 (24%), Positives = 148/361 (40%), Gaps = 75/361 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H+SY QL++K + L++ IG + ++ +G
Sbjct: 85 LQHLSYEGQLKYKTQKVKDNLER------------------------IGKVYTRVHDTIG 120
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVD-CPNVSEIACKYASIF 425
YRNK +F VG GF + V PV+ C EI+ + A I
Sbjct: 121 MEKPQRYRNKAQFPVGMVEGKAAVTGFYAPRSHDIV-----PVESCMIQHEISDEIARIV 175
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
+ ++++ ++ V++ G R + R G+ + V ++
Sbjct: 176 RNWIRKYNISVYDEKTGKGLIRHIATRVAFKTGEVMAV----------------IVINGK 219
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
+ ++++ E + L ++VI + +NV + + +
Sbjct: 220 DIPYKKQLIDALKEEIR--------------GLKSVVININTKKTNVIMGEENITIYG-- 263
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
S++++ D I +++F ISP +FFQVN + E LY ++ADL + +
Sbjct: 264 --------SDNII-----DYIKDIKFEISPLSFFQVNPVQTEVLYGKALEYADLKGEETV 310
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
DV CG GTI L A + V GIE AV DA RNA INGIKN F+ AE VM L
Sbjct: 311 IDVYCGIGTISLFAAQKAAFVYGIEAVHQAVEDAKRNAYINGIKNVEFISGDAEKVMPEL 370
Query: 666 L 666
+
Sbjct: 371 V 371
>gi|400927266|ref|YP_001086872.2| tRNA (Uracil-5-)-methyltransferase [Clostridium difficile 630]
gi|328887534|emb|CAJ67227.2| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
630]
Length = 453
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 135/308 (43%), Gaps = 55/308 (17%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREG----VTAVEEPVDCPNVSEIA 418
GI GSP YRNK E++ G ++ P LG ++G + VEE C V E
Sbjct: 114 GIEGSPENKYYRNKMEYTFGDEVKNGP---LTLGLHKKGKHIDIQTVEE---CMLVDEDF 167
Query: 419 CKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEV 478
K EF + LP + + G+ R L VR+G ++ +E+
Sbjct: 168 SKILVSSVEFFNEKKLPYYRTMNHKGYLRHLVVRKG------------------IHTNEI 209
Query: 479 ML-IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADA 537
M+ I S FD +EF+ + A L ++ + G+++ D
Sbjct: 210 MVNIVTSSQEDFD----MNEFKDMLLGIDLKA-------ELVGVLHTINDGLADAVQCD- 257
Query: 538 PLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWA 597
LR+L D I + I L+F ISP +FFQ NT AE LYS+ D+
Sbjct: 258 ELRVLY----------GRD----YIQEEILGLKFKISPFSFFQTNTKGAEVLYSIARDFI 303
Query: 598 DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAK 657
D ++FD+ GTG+IG +A V GIE+ AV A+ NA++NG+ NC F+
Sbjct: 304 GDYNDKVVFDLYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGD 363
Query: 658 AEDVMGSL 665
V+ L
Sbjct: 364 VAKVVKDL 371
>gi|422845170|ref|ZP_16891880.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus delbrueckii
subsp. lactis DSM 20072]
gi|325684651|gb|EGD26806.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus delbrueckii
subsp. lactis DSM 20072]
Length = 451
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 98/359 (27%), Positives = 149/359 (41%), Gaps = 75/359 (20%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+T LAH+ Y QLE K+ + ++L K + K +LP
Sbjct: 79 LTSLAHLKYDKQLEFKQKQVKELLSKAHLDQIKVAE---TLP------------------ 117
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
SPL GYRNK + V ++ + +GF + + V + + P + +
Sbjct: 118 ---SPLETGYRNKAQVPVR-MVKGQLEIGFFRRHSHDLVPLEDFFTNDPEIDRVLLA--- 170
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
++ L++ +P ++ K+ G R L VR G
Sbjct: 171 -VRDILREKRIPAYDEEKHQGQVRYLEVRRG----------------------------- 200
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLS 543
+AT D VV +R P L I++ GV ++ P R
Sbjct: 201 --TATGDMMVVLVCLDR-----------DFPGLHAVVDEIKEIAGVKSIFLNHNPKRTNV 247
Query: 544 IPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDT 603
I GE + + + I D I +L F ISP +FFQ+N+L +LY L D A L D
Sbjct: 248 IL---GE-HDYHLWGKRYIDDKIGDLTFEISPQSFFQINSLQTPRLYKLAIDQAGLTKDD 303
Query: 604 LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
L+ D G GTIGL+ A V V G+E+ +AV DA NA +N I N ++ KAE++M
Sbjct: 304 LIVDAYSGIGTIGLSAAKYVKEVRGVEVVKAAVKDAKNNARLNQIHNAKYYAGKAEELM 362
>gi|420144141|ref|ZP_14651629.1| tRNA methyltransferase [Lactococcus garvieae IPLA 31405]
gi|391855593|gb|EIT66142.1| tRNA methyltransferase [Lactococcus garvieae IPLA 31405]
Length = 475
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 99/373 (26%), Positives = 154/373 (41%), Gaps = 78/373 (20%)
Query: 301 RDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCK 360
R + HM+Y QL K + +L+K NA K P++
Sbjct: 104 RTGIADFGHMTYPAQLHFKHKQVVDVLRK---NAHK--------PDF------------P 140
Query: 361 LEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
+ LG+ + YRNK + V S+ K GF N + V + + P + E+ +
Sbjct: 141 VLDTLGAEQESQYRNKAQVPVR-SVNGKTETGFFRKNSHDLVPIRDFYIQNPEIDELVNQ 199
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
+E L + ++P ++ G R + +R G G ++ML
Sbjct: 200 ----VRESLIKLNIPPYDEQTKRGIVRNIVIRRGHHSG------------------QMML 237
Query: 481 IAQVSSATFDD-AVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL 539
I V+ F + + +E+ +F S+ + A +
Sbjct: 238 ILVVAKEKFTGLSELVAEYSNKVDSFQLSINTSTGN-----------------AIFGSKF 280
Query: 540 RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
+LLS D I DS+ F IS AF+QVNT AEKLY L D+ADL
Sbjct: 281 KLLS----------GKDY----ITDSMLGKDFQISARAFYQVNTAQAEKLYQLAYDFADL 326
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659
+ ++ D G GTIGL +A +V V G+E+ AV +A NA +NGI N ++ AE
Sbjct: 327 KAEDVVIDAYSGIGTIGLGMADKVAQVYGMEIIPEAVENAKTNAALNGITNAQYEVGPAE 386
Query: 660 DVMGSLLKDYLNP 672
+VM L+D + P
Sbjct: 387 EVMPQWLQDGIQP 399
>gi|255654431|ref|ZP_05399840.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
QCD-23m63]
Length = 451
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 135/308 (43%), Gaps = 55/308 (17%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREG----VTAVEEPVDCPNVSEIA 418
GI GSP YRNK E++ G ++ P LG ++G + VEE C V E
Sbjct: 114 GIEGSPENKYYRNKMEYTFGDEVKNGP---LTLGLHKKGKHIDIQTVEE---CMLVDEDF 167
Query: 419 CKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEV 478
K EF + LP + + G+ R L VR+G ++ +E+
Sbjct: 168 SKILVSSVEFFNEKKLPYYRTMNHKGYLRHLVVRKG------------------IHTNEI 209
Query: 479 ML-IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADA 537
M+ I S FD +EF K G S L ++ + G+++ D
Sbjct: 210 MVNIVTSSQEDFD----MNEF----KDMLLGIDLKSE---LVGVLHTINDGLADAVQCD- 257
Query: 538 PLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWA 597
LR+L D I + I L+F ISP +FFQ NT AE LYS+ D+
Sbjct: 258 ELRVLY----------GRD----YIQEEILGLKFKISPFSFFQTNTKGAEVLYSIARDFI 303
Query: 598 DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAK 657
D ++FD+ GTG+IG +A V GIE+ AV A+ NA++NG+ NC F+
Sbjct: 304 GDYNDKVVFDLYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGD 363
Query: 658 AEDVMGSL 665
V+ L
Sbjct: 364 VAKVVKDL 371
>gi|260682153|ref|YP_003213438.1| tRNA (Uracil-5-)-methyltransferase [Clostridium difficile CD196]
gi|260208316|emb|CBA60769.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
CD196]
Length = 456
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 135/308 (43%), Gaps = 55/308 (17%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREG----VTAVEEPVDCPNVSEIA 418
GI GSP YRNK E++ G ++ P LG ++G + VEE C V E
Sbjct: 119 GIEGSPENKYYRNKMEYTFGDEVKNGP---LTLGLHKKGKHIDIQTVEE---CMLVDEDF 172
Query: 419 CKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEV 478
K EF + LP + + G+ R L VR+G ++ +E+
Sbjct: 173 SKILVSSVEFFNEKKLPYYRTMNHKGYLRHLVVRKG------------------IHTNEI 214
Query: 479 ML-IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADA 537
M+ I S FD +EF+ + A L ++ + G+++ D
Sbjct: 215 MVNIVTSSQEDFD----MNEFKDMLLGIDLKA-------ELVGVLHTINDGLADAVQCD- 262
Query: 538 PLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWA 597
LR+L D I + I L+F ISP +FFQ NT AE LYS+ D+
Sbjct: 263 ELRVLY----------GRD----YIQEEILGLKFKISPFSFFQTNTKGAEVLYSIARDFI 308
Query: 598 DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAK 657
D ++FD+ GTG+IG +A V GIE+ AV A+ NA++NG+ NC F+
Sbjct: 309 GDYNDKVVFDLYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGD 368
Query: 658 AEDVMGSL 665
V+ L
Sbjct: 369 VAKVVKDL 376
>gi|296449152|ref|ZP_06890939.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile
NAP08]
gi|296880869|ref|ZP_06904817.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile
NAP07]
gi|296261971|gb|EFH08779.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile
NAP08]
gi|296428156|gb|EFH14055.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile
NAP07]
Length = 453
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 135/308 (43%), Gaps = 55/308 (17%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREG----VTAVEEPVDCPNVSEIA 418
GI GSP YRNK E++ G ++ P LG ++G + VEE C V E
Sbjct: 116 GIEGSPENKYYRNKMEYTFGDEVKNGP---LTLGLHKKGKHIDIQTVEE---CMLVDEDF 169
Query: 419 CKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEV 478
K EF + LP + + G+ R L VR+G ++ +E+
Sbjct: 170 SKILVSSVEFFNEKKLPYYRTMNHKGYLRHLVVRKG------------------IHTNEI 211
Query: 479 ML-IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADA 537
M+ I S FD +EF K G S L ++ + G+++ D
Sbjct: 212 MVNIVTSSQEDFD----MNEF----KDMLLGIDLKSE---LVGVLHTINDGLADAVQCD- 259
Query: 538 PLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWA 597
LR+L D I + I L+F ISP +FFQ NT AE LYS+ D+
Sbjct: 260 ELRVLY----------GRD----YIQEEILGLKFKISPFSFFQTNTKGAEVLYSIARDFI 305
Query: 598 DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAK 657
D ++FD+ GTG+IG +A V GIE+ AV A+ NA++NG+ NC F+
Sbjct: 306 GDYNDKVVFDLYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGD 365
Query: 658 AEDVMGSL 665
V+ L
Sbjct: 366 VAKVVKDL 373
>gi|392939253|ref|ZP_10304897.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermoanaerobacter
siderophilus SR4]
gi|392291003|gb|EIV99446.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermoanaerobacter
siderophilus SR4]
Length = 455
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/360 (25%), Positives = 147/360 (40%), Gaps = 75/360 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H+SY QL++K + L++ IG + ++ +G
Sbjct: 85 LQHLSYEGQLKYKTQKVKDNLER------------------------IGKVYTRVHDTIG 120
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVD-CPNVSEIACKYASIF 425
YRNK +F VG GF + V PV+ C EI+ + A I
Sbjct: 121 MEKPQRYRNKAQFPVGMVEGKAAVTGFYAPRSHDIV-----PVESCMIQHEISDEIARIV 175
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
+ ++++ ++ V++ G R + R G+ + V ++
Sbjct: 176 RNWIRKYNISVYDEKTGKGLIRHIVTRVAFKTGEVMAV----------------IVINGK 219
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
+ ++++ E + L ++VI + +NV + + +
Sbjct: 220 DIPYKKQLIDALKEEIR--------------GLKSVVININTKKTNVIMGEENITIYG-- 263
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
S++++ D I +++F ISP +FFQVN + E LY ++ADL + +
Sbjct: 264 --------SDNII-----DYIKDIKFEISPLSFFQVNPVQTEVLYGKALEYADLKGEETV 310
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
DV CG GTI L A + V GIE AV DA RNA INGIKN F+ AE VM L
Sbjct: 311 IDVYCGIGTISLFAAQKAAFVYGIEAVYQAVEDAKRNAYINGIKNVEFISGDAEKVMPEL 370
>gi|313123184|ref|YP_004033443.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
delbrueckii subsp. bulgaricus ND02]
gi|312279747|gb|ADQ60466.1| tRNA (Uracil-5-)-methyltransferase related enzyme [Lactobacillus
delbrueckii subsp. bulgaricus ND02]
Length = 451
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 98/359 (27%), Positives = 149/359 (41%), Gaps = 75/359 (20%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+T LAH+ Y QLE K+ + ++L K + K +LP
Sbjct: 79 LTSLAHLKYDKQLEFKQKQVKELLSKAHLDQIKVAE---TLP------------------ 117
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
SPL GYRNK + V ++ + +GF + + V + + P + +
Sbjct: 118 ---SPLETGYRNKAQVPVR-MVKGQLEIGFFRRHSHDLVPLEDFFTNDPEIDRVLLA--- 170
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
++ L++ +P ++ K+ G R L VR G
Sbjct: 171 -VRDILREKRIPAYDEEKHQGQVRYLEVRRG----------------------------- 200
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLS 543
+AT D VV +R P L I++ GV ++ P R
Sbjct: 201 --TATGDMMVVLVCLDR-----------DFPGLHAVVDEIKEIAGVKSIFLNHNPKRTNV 247
Query: 544 IPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDT 603
I GE + + + I D I +L F ISP +FFQ+N+L +LY L D A L D
Sbjct: 248 IL---GE-HDYHLWGKRYIDDKIGDLTFEISPQSFFQINSLQTPRLYKLAIDQAGLTKDD 303
Query: 604 LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
L+ D G GTIGL+ A V V G+E+ +AV DA NA +N I N ++ KAE++M
Sbjct: 304 LIVDAYSGIGTIGLSAAKYVKEVRGVEVVKAAVKDAKNNARLNQIHNAKYYAGKAEELM 362
>gi|266624563|ref|ZP_06117498.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium hathewayi
DSM 13479]
gi|288863579|gb|EFC95877.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium hathewayi
DSM 13479]
Length = 463
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 130/306 (42%), Gaps = 51/306 (16%)
Query: 360 KLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREG-VTAVEEPVDCPNVSEIA 418
+ EGIL SP GYRNK EFS G + P LG R G V DC V+
Sbjct: 118 EFEGILASPQPCGYRNKMEFSFGDEFKDGPMA---LGMHRRGSFYDVVTTTDCQIVNSDF 174
Query: 419 CKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEV 478
C+ +++ ++ L + + +++G+ R L VR V E+
Sbjct: 175 CEILKASKDYFEELGLGFYKKMQHTGYLRHLLVRRA------------------VKTGEI 216
Query: 479 MLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAP 538
++ D V S+ E FA SLPL ++
Sbjct: 217 LV----------DLVTTSQEEPDLMPFAERLL----SLPLNGRIV-------------GI 249
Query: 539 LRLLSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDW 596
L + +D + D++ + ++ + L+F ISP +FFQ N+L AE LY +
Sbjct: 250 LHTWNDSLSDAVKNDKTDILYGQDYFYEELLGLKFRISPFSFFQTNSLGAEVLYEKARSY 309
Query: 597 ADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCA 656
D ++FD+ GTGTI +A V+G+E+ AV A NA++NG++NC F+
Sbjct: 310 VGDTKDMVVFDLYSGTGTIAQMIAPVAKKVVGVEIVEEAVEAAKENAKMNGLENCEFIAG 369
Query: 657 KAEDVM 662
V+
Sbjct: 370 DVLKVI 375
>gi|326391815|ref|ZP_08213332.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus
JW 200]
gi|325992144|gb|EGD50619.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus
JW 200]
Length = 455
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/360 (25%), Positives = 147/360 (40%), Gaps = 75/360 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H+SY QL++K + L++ IG + ++ +G
Sbjct: 85 LQHLSYEGQLKYKTQKVKDNLER------------------------IGKVYTRVHDTIG 120
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVD-CPNVSEIACKYASIF 425
YRNK +F VG GF + V PV+ C EI+ + A I
Sbjct: 121 MEKPQRYRNKAQFPVGMVEGKAAVTGFYAPRSHDIV-----PVESCMIQHEISDEIARIV 175
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
+ ++++ ++ V++ G R + R G+ + V ++
Sbjct: 176 RNWIRKYNISVYDEKTGKGLIRHIVTRVAFKTGEVMAV----------------IVINGK 219
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
+ ++++ E + L ++VI + +NV + + +
Sbjct: 220 DIPYKKQLIDALKEEIR--------------GLKSVVININTKKTNVIMGEENITIYG-- 263
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
S++++ D I +++F ISP +FFQVN + E LY ++ADL + +
Sbjct: 264 --------SDNII-----DYIKDIKFEISPLSFFQVNPVQTEVLYGKALEYADLKGEETV 310
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
DV CG GTI L A + V GIE AV DA RNA INGIKN F+ AE VM L
Sbjct: 311 IDVYCGIGTISLFAAQKAAFVYGIEAVYQAVEDAKRNAYINGIKNVEFISGDAEKVMPEL 370
>gi|404416612|ref|ZP_10998429.1| RNA methyltransferase [Staphylococcus arlettae CVD059]
gi|403491016|gb|EJY96544.1| RNA methyltransferase [Staphylococcus arlettae CVD059]
Length = 457
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/356 (25%), Positives = 147/356 (41%), Gaps = 72/356 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L HMSY QL KK + +T RKA N + + I + P +
Sbjct: 85 LQHMSYDAQLAMKKEQV------ITLFHRKANFNSTIIDDTIGMTN-----PWR------ 127
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
YRNK + +G + + +GF +R+ + +C E + +
Sbjct: 128 ------YRNKSQIPIGKNSNDQAIMGF----YRQRSHDIINMDECLIQDEQHQHMMNFIK 177
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
+ + ++ ++N G R L VR G + +++M+I +
Sbjct: 178 QCCNELNISIYNEKTKKGLLRHLVVRTGH------------------HTNDLMVILVTNG 219
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
F A RL + F T+ ++ T SNV D L
Sbjct: 220 KQFPQA--QQLISRLIQNFPQ-VTSIKQNINTTH---------SNVIMGDQSYTLYG--- 264
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
E +I D++S + F IS +F+Q+N+ EKLY D+A+L + ++
Sbjct: 265 ------------EDKIIDTLSEITFKISDQSFYQINSAQTEKLYQKAIDYANLAGNEIVL 312
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
D CG GTIGL +A + V G+E+ A+ DA +NA++N +N FVC KAEDV+
Sbjct: 313 DTYCGIGTIGLYMAPKAKHVYGVEVVKEAIEDAKQNAQLNEFENTTFVCGKAEDVI 368
>gi|450012323|ref|ZP_21829568.1| putative RNA methyltransferase [Streptococcus mutans A19]
gi|450022783|ref|ZP_21830153.1| putative RNA methyltransferase [Streptococcus mutans U138]
gi|449188470|gb|EMB90178.1| putative RNA methyltransferase [Streptococcus mutans A19]
gi|449194505|gb|EMB95860.1| putative RNA methyltransferase [Streptococcus mutans U138]
Length = 451
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 154/378 (40%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L V R + L H++Y QL K+ + L K+ G+S
Sbjct: 71 LTVDYLRTGIADLGHLTYGQQLNFKRKQVINSLSKIA---------GIS----------- 110
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
++ LG YRNK + V + + GF FR+ A+ D
Sbjct: 111 ---DIEVADTLGMDNPTAYRNKAQVPVR-RVNGQLETGF----FRKNSHALMPIEDYYIQ 162
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+ + + ++ L++ DL ++ + +G R L VR G G+ +
Sbjct: 163 DKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYTGQIM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++ S F + E++ F P +IQ+ + A
Sbjct: 210 ----LVLVTTRSKIFR---IEQMIEKIVSEF-----------PTVKSIIQNINDRNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
+ R L GE D +E D++ R+ IS +F+QVNT+ AEKLY
Sbjct: 252 FGSEFRTLY-----GE-----DTIE----DTMLGNRYIISAQSFYQVNTVMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D++DL PD + D G GTIGL+ A +V +V G+E+ +AV DA +NA +N I N +V
Sbjct: 298 DFSDLTPDDTVIDAYSGIGTIGLSFAKKVKVVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
AE M S K + P
Sbjct: 358 ADSAEKAMASWSKRGIKP 375
>gi|255099546|ref|ZP_05328523.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
QCD-63q42]
Length = 451
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 134/308 (43%), Gaps = 55/308 (17%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREG----VTAVEEPVDCPNVSEIA 418
GI GSP YRNK E++ G ++ P LG ++G + VEE C V E
Sbjct: 114 GIEGSPENKYYRNKMEYTFGDEVKNGP---LTLGLHKKGKHIDIQTVEE---CMLVDEDF 167
Query: 419 CKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEV 478
K EF + LP + + G+ R L VR+G ++ +E+
Sbjct: 168 SKILVSSVEFFNEKKLPYYRTMNHKGYLRHLVVRKG------------------IHTNEI 209
Query: 479 ML-IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADA 537
M+ I S FD EF K G S L ++ + G+++ D
Sbjct: 210 MVNIVTSSQEDFD----MYEF----KDMLLGIDLKSE---LVGVLHTINDGLADAVQCD- 257
Query: 538 PLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWA 597
LR+L D I + I L+F ISP +FFQ NT AE LYS+ D+
Sbjct: 258 ELRVLY----------GRD----YIQEEILGLKFKISPFSFFQTNTKGAEVLYSIARDFI 303
Query: 598 DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAK 657
D ++FD+ GTG+IG +A V GIE+ AV A+ NA++NG+ NC F+
Sbjct: 304 GDYNDKVVFDLYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGD 363
Query: 658 AEDVMGSL 665
V+ L
Sbjct: 364 VAKVVKDL 371
>gi|326204866|ref|ZP_08194719.1| RNA methyltransferase, TrmA family [Clostridium papyrosolvens DSM
2782]
gi|325984915|gb|EGD45758.1| RNA methyltransferase, TrmA family [Clostridium papyrosolvens DSM
2782]
Length = 462
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 89/365 (24%), Positives = 151/365 (41%), Gaps = 85/365 (23%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLP-CKLEGIL 365
+ HMSY QL+ KK+++ Q + R IGGL K+ +
Sbjct: 90 VQHMSYQAQLDFKKDTVLQNI------------------------RRIGGLQNIKVNNTI 125
Query: 366 GSPLVNGYRNKCEFSVGYSLQAKPTVGFMLG---NFREGVTAVEEPVDCPNVSEIACKYA 422
G YRNK ++ VG S + +GF N + +P + N+ ++
Sbjct: 126 GMENPFKYRNKVQYPVG-SDKGDIRIGFYETRSHNIIDSNLCDIQPDESNNIRDVV---- 180
Query: 423 SIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIA 482
++F + + +++ G R + VR+G E+M++
Sbjct: 181 ---RDFCKDEGIAIYDEKTGKGLLRHVMVRKG------------------FKTEEIMVVL 219
Query: 483 QVSSATF--DDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
V+ D +VN E + ++++ + +N+ D +
Sbjct: 220 VVNGNKLAKSDELVNKLLEYFPD--------------IKSIILNVNTRNTNIILGDKNIC 265
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
+ + I D I + +F ISP +FFQVN + E LY ++A L
Sbjct: 266 IYG---------------QKYITDYIGSFKFEISPLSFFQVNPIQTEVLYEKALEYAGLS 310
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
+ +FD+ CG GTI L L+ + V+G+E+ A A+ DA RNAEING+ N F+ +AE
Sbjct: 311 GNETVFDLYCGIGTISLFLSQKAKHVVGVEVVADAICDAKRNAEINGVSNVEFLVGEAEK 370
Query: 661 VMGSL 665
V+ L
Sbjct: 371 VIPEL 375
>gi|238917477|ref|YP_002930994.1| hypothetical protein EUBELI_01555 [Eubacterium eligens ATCC 27750]
gi|238872837|gb|ACR72547.1| Hypothetical protein EUBELI_01555 [Eubacterium eligens ATCC 27750]
Length = 470
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 142/330 (43%), Gaps = 63/330 (19%)
Query: 346 EWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTA 404
E +++ G LP EGI+GSP+ YRNK EFS G + P +G N +
Sbjct: 111 EKLLREVVSGELP--FEGIIGSPVTEEYRNKMEFSFGDEYKDGPLALGLHKRNSMYDIVP 168
Query: 405 VEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVE 464
V E C + E K + Q++ + +LP ++ + G+ R L VR+ G+ L
Sbjct: 169 VTE---CKIIDEDYRKILTCVQDYAIEKELPFQHKLSHEGYLRHLLVRKSVKTGQILV-- 223
Query: 465 NLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQ 524
D V ++ E T+ LT ++
Sbjct: 224 --------------------------DIVTTTQIEHDFTELVNRLTSIEYKGTLTGVL-- 255
Query: 525 DHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTL 584
N + ADA + E +D +E + + LRF I+P +FFQ N+L
Sbjct: 256 ---HTFNDSLADA------VINEKTELLYGHDYIE----EELLGLRFKITPFSFFQTNSL 302
Query: 585 AAEKLYSLG---------GDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASA 635
AE LYS GD AD P +++D+ GTGTI L+ VIG+E+ A A
Sbjct: 303 GAEVLYSKAREYVLSGGFGDVADSKP--VIYDLYTGTGTIAQMLSPVASKVIGVEIVAEA 360
Query: 636 VSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
V A +NA NG+ NC F+ A+DV+ +L
Sbjct: 361 VEAAKKNAAQNGLTNCEFI---ADDVLKAL 387
>gi|449898381|ref|ZP_21790582.1| putative RNA methyltransferase [Streptococcus mutans R221]
gi|449259897|gb|EMC57413.1| putative RNA methyltransferase [Streptococcus mutans R221]
Length = 451
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 95/378 (25%), Positives = 153/378 (40%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L V R + L H++Y QL K+ + L K+T G+S
Sbjct: 71 LTVDYLRTGIADLGHLTYGQQLNFKRKQVINSLSKIT---------GIS----------- 110
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
++ LG YRNK + V + + GF N + + + + +
Sbjct: 111 ---DIEVADTLGMDNPTAYRNKAQVPVR-RVNGQLETGFFRKNSHDLMPIEDYYIQDKEI 166
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+ + ++ L++ DL ++ + +G R L VR G G+ +
Sbjct: 167 DRLI----NFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYTGQIM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++ S F + E++ F P +IQ+ + A
Sbjct: 210 ----LVLVTTRSKIFR---IEQMIEKIVSEF-----------PAVKSIIQNINDRNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
+ R L GE D +E D++ R+ IS +F+QVNT+ AEKLY
Sbjct: 252 FGSEFRTLY-----GE-----DTIE----DTMLGNRYIISAQSFYQVNTVMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D++DL PD + D G GTIGL+ A +V V G+E+ +AV DA +NA +N I N +V
Sbjct: 298 DFSDLAPDDTVIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
AE M S K + P
Sbjct: 358 ADSAEKAMASWSKRGIKP 375
>gi|315641084|ref|ZP_07896163.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus italicus DSM
15952]
gi|315483092|gb|EFU73609.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus italicus DSM
15952]
Length = 465
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 97/377 (25%), Positives = 151/377 (40%), Gaps = 83/377 (22%)
Query: 301 RDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCK 360
R + PL+H++Y QL K+ + +LKK+ P+ P M+
Sbjct: 89 RTGIAPLSHLTYEKQLSFKQEQVTNVLKKIAH-----MPDVTVSPTIAMEQP-------- 135
Query: 361 LEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
+ YRNK + V + + T GF + + + + P + E +
Sbjct: 136 ----------SHYRNKAQIPVQ-KINGQLTTGFYRKHSHTLIPLEDFYIQDPAIDEAISE 184
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
I Q F + +N + GF R + +R G + S M+
Sbjct: 185 IRDILQRF----GVKAYNEEAHEGFLRHIIIRRG-------------------HYSHQMM 221
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATAS--SPSLPLTALVIQD-HQGVSNVAPADA 537
+ V+ R K F A A LP +IQ+ ++ +NV
Sbjct: 222 VILVT--------------RKPKFFQADKIAEVIKEMLPEVVSIIQNVNEEKTNVIMGP- 266
Query: 538 PLRLLSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGD 595
+N V+ + I D + F IS +F+QVNT AEKLY + D
Sbjct: 267 ----------------TNRVLYGKSYIEDQLLGKTFRISAQSFYQVNTEQAEKLYQVAMD 310
Query: 596 WADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVC 655
+A L + + D G GTIGL+LA +V V G+E+ A AV DA NA INGI N ++
Sbjct: 311 FAQLSKNDTVVDAYSGIGTIGLSLADKVDHVYGMEIVAEAVKDAQTNAAINGITNATYLE 370
Query: 656 AKAEDVMGSLLKDYLNP 672
KAE +M ++ + P
Sbjct: 371 GKAEKIMHQWAREEVQP 387
>gi|283796600|ref|ZP_06345753.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. M62/1]
gi|291076020|gb|EFE13384.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. M62/1]
Length = 475
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 94/367 (25%), Positives = 153/367 (41%), Gaps = 73/367 (19%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPE--------WIMKSREIGGLP 358
+ ++Y QL K+ + LK++ +G+ LPE K RE
Sbjct: 82 MQAVAYEEQLRFKERKVYNNLKRI------GGLSGLLLPEEKGQENLKGTEKKRE---ET 132
Query: 359 CKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIA 418
++E I+G YRNK +F G + GF G + E DC E
Sbjct: 133 VRMEPIIGMEEPWRYRNKAQFPFGRDKDGRIIAGFYAGR----THCIVENEDCLLGVEEN 188
Query: 419 CKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKP---LDVENLEVNISEVNI 475
+ I + F+ + + +N + G R + +R+G G+ L + E+ E+ +
Sbjct: 189 REILDIIRNFMNEYKIEPYNEELHRGLVRHVLIRKGFRTGELMVCLILNGTELPKKEILV 248
Query: 476 SEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPA 535
++ IA ++S +F+ +N E VI + V+ P
Sbjct: 249 ERLLKIAGMTSISFN---INRE---------------------KTNVILGKEIVNLYGPG 284
Query: 536 DAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGD 595
I D I N+++ ISP +F+QVN + E+LY +
Sbjct: 285 -------------------------YITDYIGNVKYRISPLSFYQVNPVQTERLYGTALE 319
Query: 596 WADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVC 655
+A L D ++D+ CG GTI L LA + V G+E+ A+ DA NAEING++N F
Sbjct: 320 YAGLTGDETVWDLYCGIGTISLFLAQKAKQVYGVEIVPQAIDDARGNAEINGMENVEFFV 379
Query: 656 AKAEDVM 662
KAE+V+
Sbjct: 380 GKAEEVL 386
>gi|423088929|ref|ZP_17077297.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium difficile
70-100-2010]
gi|357558840|gb|EHJ40314.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium difficile
70-100-2010]
Length = 453
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 134/308 (43%), Gaps = 55/308 (17%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREG----VTAVEEPVDCPNVSEIA 418
GI GSP YRNK E++ G ++ P LG ++G + VEE C V E
Sbjct: 116 GIEGSPENKYYRNKMEYTFGDEVKNGP---LTLGLHKKGKHIDIQTVEE---CMLVDEDF 169
Query: 419 CKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEV 478
K EF + LP + + G+ R L VR+G ++ +E+
Sbjct: 170 SKILVSSVEFFNEKKLPYYRTMNHKGYLRHLVVRKG------------------IHTNEI 211
Query: 479 ML-IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADA 537
M+ I S FD EF+ + A L ++ + G+++ D
Sbjct: 212 MVNIVTSSQEDFD----MYEFKDMLLGIDLKA-------ELVGVLHTINDGLADAVQCD- 259
Query: 538 PLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWA 597
LR+L D I + I L+F ISP +FFQ NT AE LYS+ D+
Sbjct: 260 ELRVLY----------GRD----YIQEEILGLKFKISPFSFFQTNTKGAEVLYSIARDFI 305
Query: 598 DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAK 657
D ++FD+ GTG+IG +A V GIE+ AV A+ NA++NG+ NC F+
Sbjct: 306 GDYNDKVVFDLYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGD 365
Query: 658 AEDVMGSL 665
V+ L
Sbjct: 366 VAKVVKDL 373
>gi|418070993|ref|ZP_12708268.1| RNA methyltransferase [Lactobacillus rhamnosus R0011]
gi|423079419|ref|ZP_17068091.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
rhamnosus ATCC 21052]
gi|357540413|gb|EHJ24430.1| RNA methyltransferase [Lactobacillus rhamnosus R0011]
gi|357546738|gb|EHJ28646.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
rhamnosus ATCC 21052]
Length = 455
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 112/434 (25%), Positives = 177/434 (40%), Gaps = 115/434 (26%)
Query: 263 AVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLKVKSAR-DVVTP------------LAH 309
A+PGE+ A ++ +D L + K++SA D VTP L H
Sbjct: 38 ALPGEVVVAEVTAI-------HDRYL--EAKTHKIRSASPDRVTPTEPLFGQIGGVELNH 88
Query: 310 MSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPL 369
++Y QL K++ +AQ L K + +G L+ +G
Sbjct: 89 LAYPAQLRFKRDVVAQALAKF---------------------KPLGWQHYDLKPTIGMTH 127
Query: 370 VNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCP-----NVSEIACKYASI 424
YRNK +F V + G+ R G+ A P + + K +
Sbjct: 128 PTHYRNKAQFPVRE----------IDGHVRAGLYAPGSHRLIPLTHFLTQAPLTMKVVTT 177
Query: 425 FQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQV 484
+ L+ +P++N K++G + L VRE S G+ QV
Sbjct: 178 LCQLLEDLQIPIYNEKKHAGIVKTLVVRESFSTGQ----------------------VQV 215
Query: 485 SSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL----- 539
+ T NS +L K A TA + LP+ + Q N+ P + L
Sbjct: 216 TFIT------NSA--KLPKQ-AQLITAIAAQLPVVVSIAQ------NINPGNTSLIWGKD 260
Query: 540 -RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWAD 598
RLL+ G+P I +++S F +SP AF Q+N E+LY++ D
Sbjct: 261 SRLLA-----GQPY---------IQETLSGRTFQLSPQAFLQLNPKQTEQLYAIAKDALQ 306
Query: 599 LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658
L PD L D CG GT+G++LA+R + G++ A++DA NA+ NG N + KA
Sbjct: 307 LAPDDTLIDAYCGIGTVGMSLANRHQSIYGMDTIPEAIADAKANAKNNGFNNTHYFVGKA 366
Query: 659 EDVMGSLLKDYLNP 672
E + LK+ ++P
Sbjct: 367 ETLFPKWLKEGIHP 380
>gi|355678277|ref|ZP_09060956.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium citroniae
WAL-17108]
gi|354812723|gb|EHE97338.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium citroniae
WAL-17108]
Length = 464
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 94/366 (25%), Positives = 148/366 (40%), Gaps = 74/366 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L MSY QL+ K+ + L ++ R R+ EI LP I+G
Sbjct: 82 LQSMSYEEQLQFKERKVLNNLMRIGRFGRE----------------EINMLP-----IMG 120
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
YRNK +F G K GF G + + E DC E + I +
Sbjct: 121 MEHPWRYRNKAQFPFGRDKNGKIIAGFYAGRTHD----IIENDDCLLGVEENQEILGIIK 176
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
F+++ + ++ + G R +R+G G E+M+ ++
Sbjct: 177 RFMEEQGVEPYDETGHKGLVRHALIRKGFKTG------------------EIMVCLVING 218
Query: 487 ATFDDAVVNSEFERLAKAF--AAGATASSPSLPLTAL-VIQDHQGVSNVAPADAPLRLLS 543
+ ERL + G T+ S S+ VI + V+ P
Sbjct: 219 RKLSGKNAGTGEERLVEMLRQVKGMTSISYSINTEQTNVIMGKEIVNLYGPG-------- 270
Query: 544 IPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDT 603
I D I ++++ ISP +F+QVN + EKLY ++A+L +
Sbjct: 271 -----------------YIRDYIGDVQYQISPLSFYQVNPVQTEKLYKTALEYANLSGNE 313
Query: 604 LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMG 663
++D+ CG GTI L LA + V G+E+ A+ DA RNA +NG+ + F KAE+V
Sbjct: 314 TVWDLYCGIGTISLFLAQKAKQVYGVEIVPQAIEDARRNAAVNGMDHVEFFVGKAEEV-- 371
Query: 664 SLLKDY 669
LL+ Y
Sbjct: 372 -LLQQY 376
>gi|423198277|ref|ZP_17184860.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aeromonas hydrophila
SSU]
gi|404630501|gb|EKB27178.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aeromonas hydrophila
SSU]
Length = 450
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 90/331 (27%), Positives = 143/331 (43%), Gaps = 54/331 (16%)
Query: 337 ACPNGVSLPEWIMKS--REIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFM 394
A P + L + +++S ++G + ILG YRNK +++V +A +GF
Sbjct: 86 AYPAQLKLKQSLVQSALEQVGLGEAVVNPILGMETPFAYRNKAQYAV-RGCEAGAEIGFY 144
Query: 395 LGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREG 454
+ + +TA DC + + + + +++ D+ ++ ++GF R L R+G
Sbjct: 145 RKHSHDLITAD----DCAVQDSLHVELNARVRNWMRAHDIAAYDEVDHTGFVRNLMTRKG 200
Query: 455 RSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSP 514
G E+ + V + E + F A A+
Sbjct: 201 FKSG--------ELMVVLVTLGEEL------------------------PFEAELLAALS 228
Query: 515 SLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCIS 574
LP+T LV ++ +N D LL I D I L F IS
Sbjct: 229 DLPVTTLVQNINEARTNRILGDNNRVLLG---------------SGVIRDKIHELEFEIS 273
Query: 575 PTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNAS 634
P +FFQ N + LYS ++ +L + +FD+ CG GTI L LA + V+GIE S
Sbjct: 274 PLSFFQNNPSQTDVLYSKALEYCELTGNETVFDIYCGIGTISLFLAGKAAKVVGIESVES 333
Query: 635 AVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
A+SDA RNA +NGI+ F KAE +M +L
Sbjct: 334 AISDARRNAALNGIEQTEFHVGKAEQLMPAL 364
>gi|392989350|ref|YP_006487943.1| TrmA family RNA methyltransferase [Enterococcus hirae ATCC 9790]
gi|392336770|gb|AFM71052.1| TrmA family RNA methyltransferase [Enterococcus hirae ATCC 9790]
Length = 457
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 111/411 (27%), Positives = 161/411 (39%), Gaps = 87/411 (21%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGL---AGDGSGLK-VKSARDVVTPLAHMSYSVQL 316
E+A+PGE E G++ G G E + D LK + R + PLAH++Y QL
Sbjct: 38 ENALPGERVEVLVVKVGNKFGYGKVEKWLTESPDRQPLKDNRLLRTGIAPLAHLNYEQQL 97
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVN--GYR 374
K+ + ++ K I K E+ LP P+ N GYR
Sbjct: 98 LFKQKQVENVMSK------------------IAKMPEVDILPT-------IPMENPVGYR 132
Query: 375 NKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDL 434
NK + V + + GF N E V + + P + E + I Q F +
Sbjct: 133 NKAQIPVR-RMDGRLATGFYKKNSHELVEIEDYYIQDPAIDEAIKRVRDILQRFQVRG-- 189
Query: 435 PVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVV 494
+N KN G R + +R G + S M++ V+
Sbjct: 190 --YNEAKNEGQIRHIIIRRG-------------------HYSHEMMVVLVT--------- 219
Query: 495 NSEFERLAKAFAAGATAS--SPSLPLTALVIQD-HQGVSNVAPADAPLRLLSIPKADGEP 551
R K F AS LP VIQ+ ++ +NV D L
Sbjct: 220 -----RKEKFFKGKEIASIIHEELPEVVSVIQNINEEKTNVILGDKEKVLYG-------- 266
Query: 552 EESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCG 611
+ I D + + IS +F+QVNT EKLY ++A L + + D G
Sbjct: 267 -------RSYIEDQLLGKTYRISSKSFYQVNTEQTEKLYQTAIEFAALQKEDTVIDAYSG 319
Query: 612 TGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
GTIGL+LA +V V G+E+ A+ DA NA N I+N + KAE VM
Sbjct: 320 IGTIGLSLADKVKEVYGMELVPEAIEDAQFNALTNKIENAHYEVGKAETVM 370
>gi|390934467|ref|YP_006391972.1| TrmA family RNA methyltransferase [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389569968|gb|AFK86373.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 452
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 77/136 (56%), Gaps = 4/136 (2%)
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNL----RFCISPTAFFQVNTLAAEKLYSLGGDW 596
+L++ K++G+ N + +D I++ +F ISP +FFQVN + + LY ++
Sbjct: 241 VLNVNKSNGKQVMGNKNIVIYCNDYITDFIGDKKFEISPLSFFQVNPVQTKVLYEKALEY 300
Query: 597 ADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCA 656
ADL D +FDV CG GTI + A V GIE+ AV DA RNA INGI N F+
Sbjct: 301 ADLKGDETVFDVYCGIGTISIFFAEYARKVYGIEVIPDAVEDAKRNAAINGIYNAEFIAG 360
Query: 657 KAEDVMGSLLKDYLNP 672
KAEDVM L LNP
Sbjct: 361 KAEDVMKKLFDKGLNP 376
>gi|317498564|ref|ZP_07956857.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 5_1_63FAA]
gi|316894051|gb|EFV16240.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 5_1_63FAA]
Length = 360
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 141/314 (44%), Gaps = 55/314 (17%)
Query: 354 IGGLPC---KLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVD 410
IGGL K+E ILG YRNK +F VGY + GF G + +
Sbjct: 8 IGGLENIEEKMEPILGMEEPFYYRNKAQFPVGYDKEGNLITGFYAGRTHHIIDCTHCMIQ 67
Query: 411 CPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNI 470
P +I K ++++++++ ++ + G R + R G G+ + L VN
Sbjct: 68 HPVNEQILLK----VLDYMKKNNITAYDEKTHKGLVRHIVTRVGFKTGEIMVC--LVVNG 121
Query: 471 SEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVS 530
S+ N+ + ++ D++ E +T++ + ++ +
Sbjct: 122 SKKNLRNLEMLV--------DSLTEVE-------------------GMTSICVNINKEKT 154
Query: 531 NVAPADAPLRLL--SIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEK 588
N R+L I + G+P I+D I N+++ I P +FFQVN +
Sbjct: 155 N--------RILGSKIEEVYGKP---------YIYDYIGNVKYQIGPLSFFQVNPTQTKV 197
Query: 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI 648
LY ++ADL + +++D+ CG GTI L LA + V G+E+ A+ DA NA++NG
Sbjct: 198 LYEKAMEYADLKGEEIVWDLYCGIGTISLFLAQKAKKVYGVEIVKEAIDDARLNAKMNGF 257
Query: 649 KNCRFVCAKAEDVM 662
N F KAE+V+
Sbjct: 258 DNAEFFVGKAEEVL 271
>gi|419777531|ref|ZP_14303443.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
intermedius SK54]
gi|383845011|gb|EID82421.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
intermedius SK54]
Length = 480
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 100/379 (26%), Positives = 153/379 (40%), Gaps = 75/379 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L + R + L H+SY QL K+ + L K I
Sbjct: 100 LDMAYLRTGIADLGHLSYPSQLAFKRKQVKDSLYK------------------------I 135
Query: 355 GGLP-CKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPN 413
GL ++ LG GYRNK + V + + GF N + + + + P
Sbjct: 136 AGLSNVEVSPTLGMERPLGYRNKAQIPVR-RVNGQLETGFFRKNSHDLLPIEDFYIQDPV 194
Query: 414 VSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEV 473
+ ++ ++ L++ DL ++ + +G R L VR G G
Sbjct: 195 IDQVIL----FTRDLLRRFDLKPYDEREKTGLIRNLVVRRGHYSG--------------- 235
Query: 474 NISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVA 533
E+M+I + V ERL +AF P++ I D +N
Sbjct: 236 ---EIMVILVTTRPKI--LRVEQLIERLVEAF--------PAIESIMQNINDQN--TN-- 278
Query: 534 PADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLG 593
+I D D I D + N F I+ AF+QVNT AEKLY
Sbjct: 279 ---------TIFGKDWRTLHGRDY----ITDRMLNNDFQIAAPAFYQVNTEMAEKLYQTA 325
Query: 594 GDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRF 653
D+++L D ++ D G GTIGL++A +V V G+E+ AV ++ +NAEINGI N +
Sbjct: 326 IDFSELAADDVVLDAYSGIGTIGLSVAKQVKQVYGVEVIPEAVENSQKNAEINGITNTHY 385
Query: 654 VCAKAEDVMGSLLKDYLNP 672
VC AE+ M + K + P
Sbjct: 386 VCDSAENAMANWSKQDIKP 404
>gi|357057712|ref|ZP_09118570.1| hypothetical protein HMPREF9334_00287 [Selenomonas infelix ATCC
43532]
gi|355374960|gb|EHG22251.1| hypothetical protein HMPREF9334_00287 [Selenomonas infelix ATCC
43532]
Length = 465
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 103/368 (27%), Positives = 149/368 (40%), Gaps = 78/368 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPC--KLEGI 364
L H+SY QL K+ AQ++ LT IG LP +E +
Sbjct: 97 LQHLSYEAQLRAKR---AQVVDALT---------------------HIGKLPQIPVMETL 132
Query: 365 LGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASI 424
N YRNK +F +G ++ ++G F +G + +C A+
Sbjct: 133 RAEEPWN-YRNKMQFPIGRNIGK-----IVIGCFAQGSHRIINTENCHIQRAENNDLANA 186
Query: 425 FQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQV 484
+E +Q +PV+N + G R + R GRS +++M +
Sbjct: 187 AREIAEQLHIPVYNEDTHKGVLRHIVGRVGRS-------------------NDLMAVIVT 227
Query: 485 SSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSI 544
++ A +F R+ + LP V Q+ Q N +LL
Sbjct: 228 ATKQLPRA---KDFVRMMRE----------RLPNLVSVHQNIQTYRNNVIMGRDTQLLW- 273
Query: 545 PKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTL 604
G P I DS+ L F ISP +FFQVNT AE+LY +ADL
Sbjct: 274 ----GRPT---------IIDSLGRLNFHISPRSFFQVNTRQAERLYEQALAYADLHGTET 320
Query: 605 LFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664
+ D CGTGTI L LA + V GIE+ A+ DA +NA N +KN F+ A VM +
Sbjct: 321 VIDAYCGTGTITLFLAQKARKVYGIEIVQPAILDARKNARDNHVKNAEFIVGDATAVMPA 380
Query: 665 LLKDYLNP 672
L K + P
Sbjct: 381 LYKQGIRP 388
>gi|449951277|ref|ZP_21808625.1| putative RNA methyltransferase [Streptococcus mutans 11SSST2]
gi|449166466|gb|EMB69404.1| putative RNA methyltransferase [Streptococcus mutans 11SSST2]
Length = 453
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 153/378 (40%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L V R + L H++Y QL K+ + L K+ G+S
Sbjct: 71 LTVDYLRTGIADLGHLTYGQQLNFKRKQVINSLSKIA---------GIS----------- 110
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
++ LG YRNK + V + + GF FR+ A+ D
Sbjct: 111 ---DIEVADTLGMDNPTAYRNKAQVPVR-RVNGQLETGF----FRKNSHALMPIEDYYIQ 162
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+ + + ++ L++ DL ++ + +G R L VR G G+ +
Sbjct: 163 DKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYTGQIM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++ S F + E++ F P +IQ+ + A
Sbjct: 210 ----LVLVTTRSKIFR---IEQMIEKIVSEF-----------PAVKSIIQNINDRNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
+ R L GE D +E D++ R+ IS +F+QVNT+ AEKLY
Sbjct: 252 FGSEFRTLY-----GE-----DTIE----DTMLGNRYIISAQSFYQVNTVMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D++DL PD + D G GTIGL+ A +V V G+E+ +AV DA +NA +N I N +V
Sbjct: 298 DFSDLAPDDTVIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
AE M S K + P
Sbjct: 358 ADSAEKAMASWSKRGIKP 375
>gi|450030471|ref|ZP_21833223.1| putative RNA methyltransferase [Streptococcus mutans G123]
gi|449192752|gb|EMB94159.1| putative RNA methyltransferase [Streptococcus mutans G123]
Length = 454
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 153/378 (40%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L V R + L H++Y QL K+ + L K+ G+S
Sbjct: 71 LTVDYLRTGIADLGHLTYGQQLNFKRKQVINSLSKIA---------GIS----------- 110
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
+ LG YRNK + V + + GF FR+ A+ D
Sbjct: 111 ---DIDVADTLGMDNPTAYRNKAQVPVR-RVNGQLETGF----FRKNSHALMPIEDYYIQ 162
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+ + + ++ L++ DL ++ + +G R L VR G G+ +
Sbjct: 163 DKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYTGQIM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++ S F + E++ F P+ +IQ+ + A
Sbjct: 210 ----LVLVTTRSKIFR---IEQMIEKIVSEF-----------PVVKSIIQNINDRNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
+ R L GE D +E D++ R+ IS +F+QVNT+ AEKLY
Sbjct: 252 FGSEFRTLY-----GE-----DTIE----DTMLGNRYIISAQSFYQVNTVMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D++DL PD + D G GTIGL+ A +V V G+E+ +AV DA +NA +N I N +V
Sbjct: 298 DFSDLTPDDTVIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
AE M S K + P
Sbjct: 358 ADSAEKAMASWSKRGIKP 375
>gi|168179294|ref|ZP_02613958.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum NCTC 2916]
gi|182669610|gb|EDT81586.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum NCTC 2916]
Length = 450
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 84/318 (26%), Positives = 134/318 (42%), Gaps = 53/318 (16%)
Query: 348 IMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVG-YSLQAKPTVGFMLGNFREGVTAVE 406
+ KS+EI G G+ SP YRNK EF+ G T+G + N + V+
Sbjct: 101 LFKSKEIKGFD--FLGVEKSPEEYEYRNKMEFTFGDMEKGGDLTLGMHVKNRNFSIVTVD 158
Query: 407 EPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENL 466
+C V + + + LP + + GF R L +R+ ++ G+ L
Sbjct: 159 ---NCEIVDRDFRNILTTVVNYFNEKRLPKYRVMSHEGFLRNLVIRKAKNTGEIL----- 210
Query: 467 EVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDH 526
+NI S FD F+ + G + ++ +
Sbjct: 211 ------INI------VTTSQMEFD-------FKEIVDMLLKGECKGE----IKGILHTIN 247
Query: 527 QGVSNVAPADAPLRLLSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTL 584
+S+V D +++ R I + + L+F I+P AFFQ N+
Sbjct: 248 DTLSDVVQVDKL-----------------EILYGRDYIIEELLGLKFKIAPEAFFQTNSK 290
Query: 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAE 644
AEKLYS+ D+ ++FD+ CGTGTIG +A R VIG+E+ AV A+ NA+
Sbjct: 291 GAEKLYSIVKDFLGDASSKVVFDLYCGTGTIGQIVAPRAKKVIGVELIEEAVKAANENAK 350
Query: 645 INGIKNCRFVCAKAEDVM 662
+NG+ NC F+ V+
Sbjct: 351 LNGLNNCEFIAGDVAKVI 368
>gi|450143835|ref|ZP_21873667.1| putative RNA methyltransferase [Streptococcus mutans 1ID3]
gi|450160752|ref|ZP_21880180.1| putative RNA methyltransferase [Streptococcus mutans 66-2A]
gi|449151553|gb|EMB55285.1| putative RNA methyltransferase [Streptococcus mutans 1ID3]
gi|449239696|gb|EMC38407.1| putative RNA methyltransferase [Streptococcus mutans 66-2A]
Length = 451
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 94/378 (24%), Positives = 153/378 (40%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L V R + L H++Y QL K+ + L K+ G+S
Sbjct: 71 LTVDYLRTGIADLGHLTYGQQLNFKRKQVINSLSKIA---------GIS----------- 110
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
+ LG YRNK + V + + GF N + + + + ++
Sbjct: 111 ---DIDVADTLGMDNPTAYRNKAQVPVR-RVNGQLETGFFRKNSHDLMPIEDYYIQDKDI 166
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+ + ++ L++ DL ++ + +G R L VR G G+ +
Sbjct: 167 DRLI----NFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYTGQIM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++ S F + E++ F P +IQ+ + A
Sbjct: 210 ----LVLVTTRSKIFR---IEQMIEKIVSEF-----------PAVKSIIQNINDRNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
+ R L GE D +E D++ R+ IS +F+QVNT+ AEKLY +
Sbjct: 252 FGSEFRTLY-----GE-----DTIE----DTMLGNRYIISAQSFYQVNTVMAEKLYQIAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D++DL PD + D G GTIGL+ A +V V G+E+ +AV DA +NA +N I N +V
Sbjct: 298 DFSDLAPDDTVIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
AE M S K + P
Sbjct: 358 ADSAEKAMASWSKRGIKP 375
>gi|229552631|ref|ZP_04441356.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus LMS2-1]
gi|258540007|ref|YP_003174506.1| RNA methyltransferase [Lactobacillus rhamnosus Lc 705]
gi|385835657|ref|YP_005873431.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
rhamnosus ATCC 8530]
gi|229314002|gb|EEN79975.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus LMS2-1]
gi|257151683|emb|CAR90655.1| RNA methyltransferase [Lactobacillus rhamnosus Lc 705]
gi|355395148|gb|AER64578.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
rhamnosus ATCC 8530]
Length = 455
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 112/434 (25%), Positives = 176/434 (40%), Gaps = 115/434 (26%)
Query: 263 AVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLKVKSAR-DVVTP------------LAH 309
A+PGE+ A ++ +D L + K++SA D VTP L H
Sbjct: 38 ALPGEVVVAEVTAI-------HDRYL--EAKTHKIRSASPDRVTPTEPLFGQIGGVELNH 88
Query: 310 MSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPL 369
++Y QL K++ +AQ L K + +G L+ +G
Sbjct: 89 LAYPAQLRFKRDVVAQALAKF---------------------KPLGWQHYDLKPTIGMTH 127
Query: 370 VNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCP-----NVSEIACKYASI 424
YRNK +F V + G+ R G+ A P + + K
Sbjct: 128 PTHYRNKAQFPVRE----------IDGHVRAGLYAPGSHRLIPLTHFLTQAPLTMKVVKT 177
Query: 425 FQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQV 484
+ L+ +P++N K++G + L VRE S G+ QV
Sbjct: 178 LCQLLEDLQIPIYNEKKHAGIVKTLVVRESFSTGQ----------------------VQV 215
Query: 485 SSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL----- 539
+ T NS +L K A TA + LP+ + Q N+ P+ L
Sbjct: 216 TFIT------NSA--KLPKQ-AQLITAIAAQLPMVVSIAQ------NINPSSTSLIWGKE 260
Query: 540 -RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWAD 598
RLL+ G+P I +++S F +SP AF Q+N E+LY++ D
Sbjct: 261 SRLLA-----GQP---------YIQETLSGRTFQLSPQAFLQLNPKQTEQLYAIAKDALQ 306
Query: 599 LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658
L PD L D CG GT+G++LA+R + G++ A++DA NA+ NG N + KA
Sbjct: 307 LAPDDTLIDAYCGIGTVGMSLANRHQSIYGMDTIPEAIADAKDNAKNNGFNNTHYFVGKA 366
Query: 659 EDVMGSLLKDYLNP 672
E + LK+ ++P
Sbjct: 367 ETLFPKWLKEGIHP 380
>gi|168185623|ref|ZP_02620258.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
C str. Eklund]
gi|169296454|gb|EDS78587.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
C str. Eklund]
Length = 472
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 93/370 (25%), Positives = 153/370 (41%), Gaps = 75/370 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGI-- 364
+ H +Y QLE KKN + L+++ + E + + E C+ EGI
Sbjct: 88 IQHFNYEAQLEFKKNRVKDCLERIGK------------LEILTNNEETDKSNCENEGIIL 135
Query: 365 ---LGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKY 421
LG YRNK + VG + VGF + + + C E+
Sbjct: 136 HNTLGMKNPYRYRNKVQLPVGEE-NGEIKVGFYAPRSHDII----DMEICHIQDEVGDTV 190
Query: 422 ASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLI 481
S+ +E++++ ++ +N KN+G R + VR G N +EVM++
Sbjct: 191 VSLIKEWMKKYNIKPYNEQKNTGLVRHIMVRRG------------------FNTNEVMIV 232
Query: 482 AQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLP----LTALVIQDHQGVSNVAPADA 537
+ LP L L+++ G++++
Sbjct: 233 I---------------------------VTRTNELPYKEELIELILKKIDGITSIVQNIN 265
Query: 538 PLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWA 597
R I D I D I +F ISP +FFQVN + E LY+ ++A
Sbjct: 266 SKRTNVILGLKNINLYGKD----YISDYIGEFKFNISPLSFFQVNPVQTEVLYNKALEYA 321
Query: 598 DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAK 657
L + ++FD CGTGTI L L+ V G+E+ +A+ +A NAE N + N F+ K
Sbjct: 322 ALTGNEVVFDAYCGTGTISLFLSKNAKKVYGVEIVDAAIENAKINAEENNVDNAEFIVGK 381
Query: 658 AEDVMGSLLK 667
+E+V+ +L+K
Sbjct: 382 SEEVIPNLIK 391
>gi|241896472|ref|ZP_04783768.1| TrmA family tRNA (uracil-5-)-methyltransferase [Weissella
paramesenteroides ATCC 33313]
gi|241870194|gb|EER73945.1| TrmA family tRNA (uracil-5-)-methyltransferase [Weissella
paramesenteroides ATCC 33313]
Length = 469
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 98/378 (25%), Positives = 156/378 (41%), Gaps = 93/378 (24%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ PLAH+ Y QL+ K+ IA++ K + A G+ P
Sbjct: 99 IAPLAHLKYDAQLKFKQQQIAELFSKQHIDVNVAPTIGMENP------------------ 140
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREG---VTAVEE-PVDCPNVSEIAC 419
GYRNK + ++ + T GF FR G + +E+ + P +
Sbjct: 141 -------TGYRNKAQIP-AREIKGQLTTGF----FRRGSHRLMPIEDFYIQDPEID---- 184
Query: 420 KYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVM 479
K I ++ L++ +P ++ + G R + VR G S M
Sbjct: 185 KAIVIIRDILRKFHVPAYDEIHHKGVIRNIMVRRGYY-------------------SHEM 225
Query: 480 LIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPS----LPLTALVIQD-HQGVSNVAP 534
++ V+ + +R+ GA P LP +IQ+ +Q +NV
Sbjct: 226 MVVLVTRS-----------KRIP-----GANIIIPQIKEVLPEVTSIIQNVNQDKTNVIL 269
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
D L N V++ D++ + F I P +F+QVN E LY L
Sbjct: 270 GDVNHVLWG-----------NKVIK----DTLFDKTFAIGPNSFYQVNPQTTEILYKLAA 314
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D A+L + + D G GTI LT+A +V V+G+E+ AV DA RNA++N + N +F
Sbjct: 315 DKAELTGNETVIDAYSGIGTISLTIADKVKSVLGVEVVPGAVDDAKRNADLNNVHNVKFE 374
Query: 655 CAKAEDVMGSLLKDYLNP 672
KAE+ M + +D L P
Sbjct: 375 LGKAEEKMVAWQQDGLKP 392
>gi|341878549|gb|EGT34484.1| hypothetical protein CAEBREN_30330 [Caenorhabditis brenneri]
Length = 603
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 88/304 (28%), Positives = 138/304 (45%), Gaps = 50/304 (16%)
Query: 298 KSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGL 357
K+AR+ VTPLA M Y QLE K+ + + + KL + N ++ + R+
Sbjct: 124 KTARESVTPLADMEYEKQLELKQQNSEKTMDKLHGQLNR---NNIANIGKQSQFRQ---- 176
Query: 358 PCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEI 417
+L+ IL +P YRNKCEF++G L + +GF+ G F E V PV+ VS
Sbjct: 177 --RLQTILPAPKTTSYRNKCEFTIGIDLDGELCIGFVGGRFAEKKHFVIPPVNVDIVSNQ 234
Query: 418 ACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISE 477
EF++++ L ++ F+ GFWR LT+RE +
Sbjct: 235 MMAILKDASEFVKETGLEPFDEFERKGFWRMLTIREFG--------------------GD 274
Query: 478 VMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADA 537
VMLI V T + + +++ F T + + ++ Q+ +S DA
Sbjct: 275 VMLIFTVFPLTEQEKTEEVQ-KKIEARFLDFDTFKTKQYRVCSIYWQEMVHIS-----DA 328
Query: 538 P-LRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDW 596
P +L++ G P I++S+ + RF +SP AFFQ N+ AA LYS G+
Sbjct: 329 PNFKLIA-----GTP---------YIYESLLDCRFRVSPPAFFQTNSQAACVLYSKIGEL 374
Query: 597 ADLG 600
LG
Sbjct: 375 CGLG 378
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 603 TLLFDVCCGTGTIGLTLAHRVGMV-----IGIEMNASAVSDAHRNAEINGI-KNCRFVCA 656
T+L D+CCGTGTIG L + IGIEM A AV DA +NA+ N + K C+++
Sbjct: 437 TILLDICCGTGTIGQCLLKTIQSTQKVCCIGIEMIAEAVEDAKQNAKQNKMEKCCKYIAG 496
Query: 657 KAEDVMGSL 665
KAED S+
Sbjct: 497 KAEDTFRSM 505
>gi|415886105|ref|ZP_11547928.1| YefA [Bacillus methanolicus MGA3]
gi|387588758|gb|EIJ81079.1| YefA [Bacillus methanolicus MGA3]
Length = 460
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 98/366 (26%), Positives = 144/366 (39%), Gaps = 81/366 (22%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLP-CKLEGIL 365
L HMSY QL+ K+N + Q+L + IG L K+ IL
Sbjct: 88 LQHMSYEGQLQFKENQVRQVLTR------------------------IGKLEDVKVHPIL 123
Query: 366 GSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF 425
G YRNK + VG K GF E V E + P ++ K
Sbjct: 124 GMDNPWHYRNKAQVPVG-EKDGKLIAGFFKPRSHEIVDTNESLIQIPEIN----KAVQAV 178
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
+E + +P +N + G R + R G+ G+ + V++I + +
Sbjct: 179 KEICSELGIPAYNEEAHKGVLRHIMARYGKQTGELM----------------VVIITRTA 222
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
+ +V RL K + V NV P + L
Sbjct: 223 DIPHKNKLVKEIIARLPKVKSI---------------------VHNVNPKRTNVIL---- 257
Query: 546 KADGEPEE---SNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPD 602
GE N+V I+D I N++F IS +F+QVN + LY ++A L +
Sbjct: 258 ---GEKTTVLWGNEV----IYDYIGNVKFAISALSFYQVNPDQTKVLYDKALEYAGLTGE 310
Query: 603 TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
+ D CG GTI L LA + V G+E+ A+ DA RNAE+NGI N F +AE V+
Sbjct: 311 ETVIDAYCGIGTISLFLAQKAKKVFGVEVVPEAIEDAKRNAELNGITNAEFAVGEAEVVI 370
Query: 663 GSLLKD 668
K+
Sbjct: 371 PKWYKE 376
>gi|195171542|ref|XP_002026564.1| GL21973 [Drosophila persimilis]
gi|194111480|gb|EDW33523.1| GL21973 [Drosophila persimilis]
Length = 296
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 66/110 (60%)
Query: 561 RIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLA 620
I D+I L+F ISP AFFQ+NT A LY D +T + D+CCGTGTI L A
Sbjct: 35 HITDTIQGLQFRISPLAFFQINTEGANVLYQQAIDLVAPTKNTTMLDICCGTGTIALAFA 94
Query: 621 HRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYL 670
V+G+E+ A+ DA NAE NGIKNC+F A+D + S++++ +
Sbjct: 95 KHCKRVLGVEIVPDAIKDAQFNAEANGIKNCKFFTGNADDFIKSMVREAM 144
>gi|421894211|ref|ZP_16324702.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pediococcus
pentosaceus IE-3]
gi|385273039|emb|CCG90074.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pediococcus
pentosaceus IE-3]
Length = 455
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 102/370 (27%), Positives = 151/370 (40%), Gaps = 77/370 (20%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ PL H++Y QL+ K+N I +LKK S E + + +G
Sbjct: 85 IAPLQHITYDAQLKFKQNQIKNLLKK-------------SHLEDLEVADTVG-------- 123
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
+ +P GYRNK + V ++ K GF N + V + + P + ++ +
Sbjct: 124 -MENP--TGYRNKAQIPVR-KIKGKLQTGFFKRNSHDLVPIEDFYIQDPVIDKVIVEVRD 179
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
I +EF + + +N G R + VR GR G+ + V+LI +
Sbjct: 180 ILREFY----IDPYREAENKGIIRNIMVRRGRRSGQIM----------------VVLITR 219
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLL 542
+ +A AA S VIQ+ + +NV D R+L
Sbjct: 220 TKDV--------PHLAEITEAIAAIDGVVS--------VIQNINYKQTNVIMGDED-RVL 262
Query: 543 SIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPD 602
+ E+ IHD + L F IS +F+QVN + EKLY L D A L +
Sbjct: 263 A--------------GESVIHDELLGLDFIISAHSFYQVNPIQTEKLYQLAIDKAGLTGE 308
Query: 603 TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
+ DV G GTI L +A V G+E+ AV DA NA N N FV KAE+ M
Sbjct: 309 ETVIDVYSGIGTISLAMAKAAKKVYGVEIVKEAVQDAKINAFQNNASNTEFVVGKAEEQM 368
Query: 663 GSLLKDYLNP 672
+D L P
Sbjct: 369 QKWQEDGLKP 378
>gi|440780726|ref|ZP_20959197.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
pasteurianum DSM 525]
gi|440221314|gb|ELP60519.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
pasteurianum DSM 525]
Length = 454
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 91/322 (28%), Positives = 131/322 (40%), Gaps = 54/322 (16%)
Query: 348 IMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVG-YSLQAKPTVGFMLGNFREGVTAVE 406
+ K +I G + EGI SP YRNK EFS G + T+G + N G+ V
Sbjct: 101 LFKEADIEGF--EYEGIEKSPKEFEYRNKMEFSFGDVEKGGELTLGMHIRNKAFGIVNVH 158
Query: 407 EPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENL 466
E C VS+ + + + + K G+ R L +RE G+ L V +
Sbjct: 159 E---CTLVSKDFRVILDTVVNYFRDKNTTYYRIMKREGYLRNLVIRETEHTGEIL-VNLV 214
Query: 467 EVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDH 526
+ E NI E F + ++ +
Sbjct: 215 TTSQDEFNIEE---------------------------FTKLLLDLDLEDKIVGILHTTN 247
Query: 527 QGVSNVAPADAPLRLLSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTL 584
S+V AD D++ R I + + L+F ISP +FFQ NTL
Sbjct: 248 DSFSDVVAADRI-----------------DILYGRDYIVEKVLGLKFKISPLSFFQTNTL 290
Query: 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIG-LTLAHRVGMVIGIEMNASAVSDAHRNA 643
AEKLYS+ D+ L+FD+ CGTGTIG + A VIGIE+ AV A+ NA
Sbjct: 291 GAEKLYSIVMDFIGEAASKLIFDLYCGTGTIGQIAAAKNAKKVIGIELIEEAVKAANENA 350
Query: 644 EINGIKNCRFVCAKAEDVMGSL 665
++N + NC F+ V+ L
Sbjct: 351 KLNDLDNCNFIAGDVAKVIQDL 372
>gi|116493111|ref|YP_804846.1| tRNA (uracil-5-)-methyltransferase related enzyme [Pediococcus
pentosaceus ATCC 25745]
gi|116103261|gb|ABJ68404.1| 23S rRNA m(5)U-1939 methyltransferase [Pediococcus pentosaceus ATCC
25745]
Length = 455
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 102/370 (27%), Positives = 151/370 (40%), Gaps = 77/370 (20%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ PL H++Y QL+ K+N I +LKK S E + + +G
Sbjct: 85 IAPLQHITYDAQLKFKQNQIKNLLKK-------------SHLEDLEVADTVG-------- 123
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
+ +P GYRNK + V ++ K GF N + V + + P + ++ +
Sbjct: 124 -MENP--TGYRNKAQIPVR-KIKGKLQTGFFKRNSHDLVPIEDFYIQDPVIDKVIVEVRD 179
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
I +EF + + +N G R + VR GR G+ + V+LI +
Sbjct: 180 ILREFY----IDPYREAENKGIIRNIMVRRGRRSGQIM----------------VVLITR 219
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLL 542
+ +A AA S VIQ+ + +NV D R+L
Sbjct: 220 TKDV--------PHLAEITEAIAAIDGVVS--------VIQNINYKQTNVIMGDED-RVL 262
Query: 543 SIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPD 602
+ E+ IHD + L F IS +F+QVN + EKLY L D A L +
Sbjct: 263 A--------------GESVIHDELLGLDFIISAHSFYQVNPIQTEKLYQLAIDKAGLTGE 308
Query: 603 TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
+ DV G GTI L +A V G+E+ AV DA NA N N FV KAE+ M
Sbjct: 309 ETVIDVYSGIGTISLAMAKAAKKVYGVEIVKEAVQDAKINAFQNNASNTEFVVGKAEEQM 368
Query: 663 GSLLKDYLNP 672
+D L P
Sbjct: 369 QKWQEDGLKP 378
>gi|449920592|ref|ZP_21798576.1| putative RNA methyltransferase [Streptococcus mutans 1SM1]
gi|449158688|gb|EMB62100.1| putative RNA methyltransferase [Streptococcus mutans 1SM1]
Length = 454
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 153/378 (40%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L V R + L H++Y QL K+ + L K+ G+S
Sbjct: 71 LTVDYLRTGIADLGHLTYGQQLNFKRKQVINSLSKIA---------GIS----------- 110
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
++ LG YRNK + V + + GF FR+ A+ D
Sbjct: 111 ---DIEVADTLGMDNPTAYRNKAQVPVR-RVNGQLETGF----FRKNSHALMPIEDYYIQ 162
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+ + + ++ L++ DL ++ + +G R L VR G G+ +
Sbjct: 163 DKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYTGQIM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++ S F + E++ F P +IQ+ + A
Sbjct: 210 ----LVLVTTRSKIFR---IEQMIEKIVSEF-----------PAVKSIIQNINDRNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
+ R L GE D +E D++ R+ IS +F+QVNT+ AEKLY
Sbjct: 252 FGSEFRTLY-----GE-----DTIE----DTMLGNRYIISAQSFYQVNTVMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D++DL PD + D G GTIGL+ A +V V G+E+ +AV DA +NA +N I N +V
Sbjct: 298 DFSDLAPDDTVIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
AE M S K + P
Sbjct: 358 ADSAEKAMASWSKRGIKP 375
>gi|392428518|ref|YP_006469529.1| RNA methyltransferase [Streptococcus intermedius JTH08]
gi|391757664|dbj|BAM23281.1| RNA methyltransferase [Streptococcus intermedius JTH08]
Length = 451
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 100/379 (26%), Positives = 153/379 (40%), Gaps = 75/379 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L + R + L H+SY QL K+ + L K I
Sbjct: 71 LDMAYLRTGIADLGHLSYPSQLAFKRKQVKDSLYK------------------------I 106
Query: 355 GGLP-CKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPN 413
GL ++ LG GYRNK + V + + GF N + + + + P
Sbjct: 107 AGLSNVEVSPTLGMERPLGYRNKAQIPVR-RVNGQLETGFFRKNSHDLLPIEDFYIQDPV 165
Query: 414 VSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEV 473
+ ++ ++ L++ DL ++ + +G R L VR G G
Sbjct: 166 IDQVIL----FTRDLLRRFDLKPYDEREKTGLIRNLVVRRGHYSG--------------- 206
Query: 474 NISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVA 533
E+M+I + V ERL +AF P++ I D +N
Sbjct: 207 ---EIMVILVTTRPKI--LRVEQLIERLVEAF--------PAIESIMQNINDQN--TN-- 249
Query: 534 PADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLG 593
+I D D I D + N F I+ AF+QVNT AEKLY
Sbjct: 250 ---------TIFGKDWRTLHGRDY----ITDRMLNNDFQIAAPAFYQVNTEMAEKLYQTA 296
Query: 594 GDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRF 653
D+++L D ++ D G GTIGL++A +V V G+E+ AV ++ +NAEINGI N +
Sbjct: 297 IDFSELAADDVVLDAYSGIGTIGLSVAKQVKQVYGVEVIPEAVENSQKNAEINGITNTHY 356
Query: 654 VCAKAEDVMGSLLKDYLNP 672
VC AE+ M + K + P
Sbjct: 357 VCDSAENAMANWSKQDIKP 375
>gi|300813136|ref|ZP_07093513.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
delbrueckii subsp. bulgaricus PB2003/044-T3-4]
gi|300495890|gb|EFK31035.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
delbrueckii subsp. bulgaricus PB2003/044-T3-4]
Length = 448
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 98/359 (27%), Positives = 149/359 (41%), Gaps = 75/359 (20%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+T LAH+ Y QLE K+ + ++L K + K +LP
Sbjct: 79 LTGLAHLKYDKQLEFKQKQVKELLSKAHLDQIKVAE---TLP------------------ 117
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
SPL GYRNK + V ++ + +GF + + V + + P + +
Sbjct: 118 ---SPLETGYRNKAQVPVR-MVKGQLEIGFFRRHSHDLVPLEDFFTNDPEIDRVLLA--- 170
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
++ L++ +P ++ K+ G R L VR G
Sbjct: 171 -VRDILREKRIPAYDEEKHQGQVRYLEVRRG----------------------------- 200
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLS 543
+AT D VV +R P L I++ GV ++ P R
Sbjct: 201 --TATGDMMVVLVCLDR-----------DFPGLHAVVDEIKEIAGVKSIFLNHNPKRTNV 247
Query: 544 IPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDT 603
I GE + + + I D I +L F ISP +FFQ+N+L +LY L D A L D
Sbjct: 248 IL---GE-HDYHLWGKRYIDDKIGDLTFEISPQSFFQINSLQTPRLYKLAIDQAGLTKDD 303
Query: 604 LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
L+ D G GTIGL+ A V V G+E+ +AV DA NA +N I N ++ KAE++M
Sbjct: 304 LIVDAYSGIGTIGLSAAKYVKEVRGVEVVKAAVKDAKNNARLNQIHNAKYYAGKAEELM 362
>gi|227509977|ref|ZP_03940026.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
brevis subsp. gravesensis ATCC 27305]
gi|227190583|gb|EEI70650.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
brevis subsp. gravesensis ATCC 27305]
Length = 456
Score = 103 bits (256), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 95/371 (25%), Positives = 149/371 (40%), Gaps = 79/371 (21%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ PL H++Y QLE K++ I K+ + + G+ P
Sbjct: 85 IAPLQHLAYPAQLEFKRHQIQNDFNKMKLDVEVSPTIGMDKP------------------ 126
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
YRNK + V L + GF + + V + + P + K
Sbjct: 127 -------YHYRNKAQIPVR-MLNGRLQTGFYRKHSHDLVPIEDFYIQDPEID----KAVV 174
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
I ++ L++ + ++ + G R + VR G + S M+I
Sbjct: 175 IVRDILRKFQITPYDEQTHRGVIRNIMVRRG-------------------HYSHEMMIVL 215
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLS 543
++ + + SE E +++ LP ++Q N+ P +
Sbjct: 216 ITKS----KKLPSEAEIISETVN--------QLPEVKSIVQ------NINPKNT------ 251
Query: 544 IPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGP 601
+ N V+ + I D + L F ISP +F+QVN + EKLY L A L
Sbjct: 252 ----NSLMGNQNKVLWGKGTITDQLMGLDFEISPNSFYQVNPIQTEKLYKLAIQKAQLNK 307
Query: 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661
D ++ D CG GTI L+LA V V G+E+ A+ DA RNA IN I NC+ V AKAE+
Sbjct: 308 DDIVIDAYCGIGTISLSLAKVVKKVYGVEIVPEAIEDAKRNAHINKISNCKVVVAKAEEQ 367
Query: 662 MGSLLKDYLNP 672
+G K L P
Sbjct: 368 LGKWQKAGLKP 378
>gi|355671995|ref|ZP_09058151.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium citroniae
WAL-17108]
gi|354815280|gb|EHE99873.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium citroniae
WAL-17108]
Length = 466
Score = 103 bits (256), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 132/309 (42%), Gaps = 43/309 (13%)
Query: 360 KLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFM--LGNFREGVTAVEEPVDCPNVSEI 417
+ +GI SP V GYRNK EFS G ++ P M G+F + VT E C V
Sbjct: 113 EFQGIKASPAVKGYRNKMEFSFGDEVKDGPLALGMHKRGSFYDIVTTPE----CQIVHPD 168
Query: 418 ACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISE 477
C+ +E+ ++ + + ++ G+ R L VR V E+ +
Sbjct: 169 FCRILVATKEYFEELGTAFYRKLQHRGYLRHLLVRRA-------------VKTGEILVDL 215
Query: 478 VMLIAQVSSATFDDAVVNSEF-ERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPAD 536
V + D+ V SE+ ERL G A ++ ++ +++V +D
Sbjct: 216 VTSTQREYLGGRDEETVLSEWKERLLSLPVDGRFA--------GILHTENDSLADVVQSD 267
Query: 537 APLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDW 596
A L + ++ + LRF ISP +FFQ N+L AE LY +
Sbjct: 268 ATHILYG---------------QDYFYEELLGLRFRISPFSFFQTNSLGAEVLYDTARSF 312
Query: 597 ADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCA 656
D ++FD+ GTGTI LA V+G+E+ AV A NA +NG+ NC F+
Sbjct: 313 VGETRDKVVFDLYSGTGTIAQILAPVAKKVVGVEIVEEAVEAAGLNAGLNGLDNCEFIAG 372
Query: 657 KAEDVMGSL 665
V+ L
Sbjct: 373 DVLKVIDGL 381
>gi|450122106|ref|ZP_21866608.1| putative RNA methyltransferase [Streptococcus mutans ST6]
gi|449228367|gb|EMC27740.1| putative RNA methyltransferase [Streptococcus mutans ST6]
Length = 451
Score = 103 bits (256), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 153/378 (40%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L V R + L H++Y QL K+ + L K+ G+S
Sbjct: 71 LTVDYLRTGIADLGHLTYGQQLNFKRKQVINSLSKIA---------GIS----------- 110
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
++ LG YRNK + V + + GF FR+ A+ D
Sbjct: 111 ---DIEVADTLGMDNPTAYRNKAQVPVR-RVNGQLETGF----FRKNSHALMPIEDYYIQ 162
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+ + + ++ L++ DL ++ + +G R L VR G G+ +
Sbjct: 163 DKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYTGQIM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++ S F + E++ F P +IQ+ + A
Sbjct: 210 ----LVLVTTRSKIFR---IEQMIEKIVSEF-----------PAVKSIIQNINDRNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
+ R L GE D +E D++ R+ IS +F+QVNT+ AEKLY
Sbjct: 252 FGSEFRTLY-----GE-----DTIE----DTMLGNRYIISAQSFYQVNTVMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D++DL PD + D G GTIGL+ A +V V G+E+ +AV DA +NA +N I N +V
Sbjct: 298 DFSDLAPDDTVIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
AE M S K + P
Sbjct: 358 ADSAEKAMASWSKRGIKP 375
>gi|333372378|ref|ZP_08464307.1| 23S rRNA (uracil-5-)-methyltransferase [Desmospora sp. 8437]
gi|332974302|gb|EGK11234.1| 23S rRNA (uracil-5-)-methyltransferase [Desmospora sp. 8437]
Length = 465
Score = 103 bits (256), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 100/373 (26%), Positives = 151/373 (40%), Gaps = 87/373 (23%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLP-CKLEGIL 365
L H++Y QLE K+ + + IGGL + +L
Sbjct: 89 LQHIAYPAQLESKRRQVVDAFAR------------------------IGGLEEVTILPVL 124
Query: 366 GSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGV----TAVEEPVDCPNVSEIACKY 421
G YRNK + VG + K GF + + +++P + + ++
Sbjct: 125 GMEEPWSYRNKAQVPVGGG-KGKVEAGFYAAGSHQIIPFDRCLIQQPENDRTIQQV---- 179
Query: 422 ASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLI 481
+E++++ D+P ++ K+ G R + VR G ++ EVM++
Sbjct: 180 ----KEWIRELDIPPYDEKKHRGCLRHVMVRTG------------------IHTQEVMVV 217
Query: 482 AQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALV--IQDHQGVSNVAPADAPL 539
V N K A P L T+L+ IQ H+ +NV
Sbjct: 218 L----------VTNGPELPHRKQLVASLRERVPGL--TSLIQNIQPHR--TNVVLGKESR 263
Query: 540 RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
L GEP IHD I ++RF ISP +FFQVN + E LY A L
Sbjct: 264 VLW------GEPV---------IHDRIGHVRFAISPHSFFQVNPVQTEVLYEQVRRMAAL 308
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659
+ ++ D CG GTIGL LA V+G+E AV DA NAE+NGI + F AE
Sbjct: 309 TGEEIIIDAYCGIGTIGLYLAKEAARVLGVESIPQAVEDARHNAELNGIDHASFEAGPAE 368
Query: 660 DVMGSLLKDYLNP 672
+VM ++ + P
Sbjct: 369 EVMPRWAREGIRP 381
>gi|168186646|ref|ZP_02621281.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
C str. Eklund]
gi|169295463|gb|EDS77596.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
C str. Eklund]
Length = 450
Score = 103 bits (256), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 101/368 (27%), Positives = 147/368 (39%), Gaps = 75/368 (20%)
Query: 299 SARDVVTPLAH--MSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGG 356
S DV +H +SY QLE KK + KL NA I G
Sbjct: 72 SIFDVCGGCSHQFLSYEKQLEIKKEQVL----KLFENAN------------------IDG 109
Query: 357 LPCKLEGILGSPLVNGYRNKCEFSVG-YSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVS 415
+ GI GSP YRNK EF+ G + T+G G+ + + C V
Sbjct: 110 F--QFLGIQGSPEEFYYRNKMEFTFGDMEKGGELTLGMHAQGKSFGIISADV---CKIVD 164
Query: 416 EIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNI 475
E+ + LP + + G+ R L +R+G+ N
Sbjct: 165 SDFNLILKTVLEYFRAQGLPHYRIMSHEGYLRNLVIRKGK------------------NT 206
Query: 476 SEVML-IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
E+M+ + S FD +EF + K LT ++ + +S+V
Sbjct: 207 KEIMVNLVTTSQKDFD----LTEFTEMLKELNYEG-------ELTGILHTINDSLSDVVQ 255
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
AD+ L I + + L+F ISP +FFQ NT AE LYS+
Sbjct: 256 ADSMKVLFG---------------RDYIMEEVLGLKFKISPFSFFQTNTKGAEALYSIVR 300
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
++ ++FD+ CGTGTIG AH VIGIE+ AV A+ NA++NG+ NC F+
Sbjct: 301 EFMGDAKSKVVFDLYCGTGTIGQIAAHNAEKVIGIELIEEAVKAANENAKLNGLTNCEFL 360
Query: 655 CAKAEDVM 662
V+
Sbjct: 361 AGDVAKVI 368
>gi|145300530|ref|YP_001143371.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida
A449]
gi|142853302|gb|ABO91623.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida
A449]
Length = 456
Score = 103 bits (256), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 88/304 (28%), Positives = 135/304 (44%), Gaps = 56/304 (18%)
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
ILG YRNK +++V +A +GF + + +TA DC + + +
Sbjct: 121 ILGMESPFAYRNKAQYAV-RGCEAGAEIGFYRKHSHDLITAD----DCAVQDSLHVELNA 175
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
+ ++++ D+ ++ ++G R L R+G G E+ + V + E
Sbjct: 176 RVRNWMREHDIAAYDEVNHTGCVRNLMTRKGFKSG--------ELMVVLVTLGE------ 221
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLS 543
A F A A+ LP+T LV + +N R+L
Sbjct: 222 ------------------ALPFEAELLATLSDLPITTLVQNINDERTN--------RILG 255
Query: 544 IPKADGEPEESNDVV--EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGP 601
+N V+ E I D I L F ISP +FFQ N + LYS ++A+L
Sbjct: 256 ---------ANNRVLLGEGVIRDKIHELEFEISPLSFFQNNPTQTDVLYSSALEYAELTG 306
Query: 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661
+ +FD+ CG GTI L LA + V+GIE SA+SDA RNA +NGI++ F KAE +
Sbjct: 307 NETVFDIYCGIGTISLFLAGKAAKVVGIESVESAISDARRNAALNGIEHTEFHVGKAEQL 366
Query: 662 MGSL 665
M L
Sbjct: 367 MPEL 370
>gi|450005441|ref|ZP_21826649.1| putative RNA methyltransferase [Streptococcus mutans NMT4863]
gi|449188517|gb|EMB90224.1| putative RNA methyltransferase [Streptococcus mutans NMT4863]
Length = 453
Score = 103 bits (256), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 153/378 (40%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L V R + L H++Y QL K+ + L K+ G+S
Sbjct: 71 LTVDYLRTGIADLGHLTYGQQLNFKRKQVINSLSKIA---------GIS----------- 110
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
++ LG YRNK + V + + GF FR+ A+ D
Sbjct: 111 ---DIEVADTLGMDNPTAYRNKAQVPVR-RVNGQLETGF----FRKNSHALMPIEDYYIQ 162
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+ + + ++ L++ DL ++ + +G R L VR G G+ +
Sbjct: 163 DKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYTGQIM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++ S F + E++ F P +IQ+ + A
Sbjct: 210 ----LVLVTTRSKIFR---IEQMIEKIVSEF-----------PAVKSIIQNINDRNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
+ R L GE D +E D++ R+ IS +F+QVNT+ AEKLY
Sbjct: 252 FGSEFRTLY-----GE-----DTIE----DTMLGNRYIISAQSFYQVNTVMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D++DL PD + D G GTIGL+ A +V V G+E+ +AV DA +NA +N I N +V
Sbjct: 298 DFSDLAPDDTVIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
AE M S K + P
Sbjct: 358 ADSAEKAMASWSKRGIKP 375
>gi|349605299|gb|AEQ00584.1| tRNA (uracil-5-)-methyltransferase-like protein-like protein,
partial [Equus caballus]
Length = 252
Score = 103 bits (256), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 82/151 (54%), Gaps = 15/151 (9%)
Query: 518 LTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTA 577
LT+L Q+ ++ + +P +LL GEP D++ +I ISP A
Sbjct: 24 LTSLYFQE-STMTRCSHQQSPYQLLF-----GEPHIFEDLLGLKIR---------ISPDA 68
Query: 578 FFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVS 637
FFQ+NT AE LY G+ + + +T+L D+CCGTG IGL+LA V+GIE+ AV
Sbjct: 69 FFQINTSGAEMLYQTVGELSGVNSNTILLDICCGTGVIGLSLAQYTSQVLGIELVEQAVE 128
Query: 638 DAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
DA A NGI NC F +AE ++ LLK
Sbjct: 129 DARWTAAFNGITNCEFHTGRAEKILPQLLKS 159
>gi|377556200|ref|ZP_09785917.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lactobacillus
gastricus PS3]
gi|376168701|gb|EHS87444.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lactobacillus
gastricus PS3]
Length = 478
Score = 103 bits (256), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 102/416 (24%), Positives = 163/416 (39%), Gaps = 83/416 (19%)
Query: 249 PMTLSGNAKQASESAVPGELAEA--HASSNGHEDGNGNDEGLAGDGSGLKVKSARDVVTP 306
P T+ G A +AV + EA H D + AG G +
Sbjct: 54 PQTIPGEIIVAEVTAVHEKYLEAKIHRLKKASPDRVPPKDDYAGLAGGFE---------- 103
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H++Y QL +K+ + L K R G ++ +
Sbjct: 104 LEHLAYQRQLAYKRQVVLDSLAKF---------------------RPFGYQHYQVRPTIA 142
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
+P GYRNK +F + + + G N E + V V P + +
Sbjct: 143 APHPYGYRNKAQFQIR-QIDGQVVAGLYRANSHEVIDMVTCAVQMPATMQAMRQLV---- 197
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
+++Q+ +PV++ NSG + + +RE RS G +++ + S + +L+ ++ +
Sbjct: 198 QWIQELQIPVYDEEANSGIIKTIAIRESRSTG---EIQVTFITNSRKLPHKRLLLDKIQT 254
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
LP V+Q N P D PL
Sbjct: 255 ----------------------------ELPAVRSVMQ------NFNPGDTPLIW----- 275
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
G+ E + + + +S+ L F +S +F Q++ E LY DL P+ L
Sbjct: 276 --GK-ETTKLAGDDYLTESLMGLDFHLSARSFLQLHPEQTETLYEEAAKAIDLTPNDTLI 332
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
D G GTIGL+LA RV V+G+E AV+DA+RNA +N I N R+ AE+VM
Sbjct: 333 DAYAGIGTIGLSLASRVKRVLGMETIPEAVADANRNAALNEITNARYEVGTAEEVM 388
>gi|449931314|ref|ZP_21802300.1| putative RNA methyltransferase [Streptococcus mutans 3SN1]
gi|449943979|ref|ZP_21806565.1| putative RNA methyltransferase [Streptococcus mutans 11A1]
gi|449148949|gb|EMB52776.1| putative RNA methyltransferase [Streptococcus mutans 11A1]
gi|449162852|gb|EMB65973.1| putative RNA methyltransferase [Streptococcus mutans 3SN1]
Length = 451
Score = 103 bits (256), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 153/378 (40%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L V R + L H++Y QL K+ + L K+ G+S
Sbjct: 71 LTVDYLRTGIADLGHLTYGQQLNFKRKQVINSLSKIA---------GIS----------- 110
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
++ LG YRNK + V + + GF FR+ A+ D
Sbjct: 111 ---DIEVADTLGMDNPTAYRNKAQVPVR-RVNGQLETGF----FRKNSHALMPIEDYYIQ 162
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+ + + ++ L++ DL ++ + +G R L VR G G+ +
Sbjct: 163 DKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYTGQIM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++ S F + E++ F P +IQ+ + A
Sbjct: 210 ----LVLVTTRSKIFR---IEQMIEKIVSEF-----------PAVKSIIQNINDRNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
+ R L GE D +E D++ R+ IS +F+QVNT+ AEKLY
Sbjct: 252 FGSEFRTLY-----GE-----DTIE----DTMLGNRYIISAQSFYQVNTVMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D++DL PD + D G GTIGL+ A +V V G+E+ +AV DA +NA +N I N +V
Sbjct: 298 DFSDLAPDDTVIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
AE M S K + P
Sbjct: 358 ADSAEKAMASWSKRGIKP 375
>gi|402835968|ref|ZP_10884521.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Mogibacterium sp.
CM50]
gi|402272726|gb|EJU21943.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Mogibacterium sp.
CM50]
Length = 613
Score = 103 bits (256), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 136/294 (46%), Gaps = 40/294 (13%)
Query: 373 YRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQS 432
YRNK EF+V + + P VGF + G + + DC A+ ++ L+
Sbjct: 266 YRNKAEFAVAM-MSSGPLVGFN----KRGSNKIVDCTDCLLQKRATMAAANAIRKLLRGK 320
Query: 433 DLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDA 492
+ V++ +GF R T++ G E+MLI +S +A
Sbjct: 321 LISVYDARHGNGFLRGFTIKVCEGTG------------------EMMLIFTGTSKQLPNA 362
Query: 493 VVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPE 552
++ A A +T P L ++V++ ++ ++ +++
Sbjct: 363 --EKVIYTISDAIDAVSTDEEPYF-LQSVVVEVNKA-KDIRETATAYEVVA--------- 409
Query: 553 ESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGT 612
SN V + + ++F IS AF+QVNT KLY+ ++A L +FD+ CG
Sbjct: 410 GSNTVTDI----TGGGMKFEISAPAFYQVNTKQMIKLYAKVREYACLKGGETVFDLYCGI 465
Query: 613 GTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
GTIGL++A GM+IGIE +AV DA+RNA INGI N R+ +AE +M LL
Sbjct: 466 GTIGLSMASEAGMIIGIESVKNAVIDANRNAVINGIVNARYYAGRAEQMMPRLL 519
>gi|418362862|ref|ZP_12963480.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida
01-B526]
gi|356685868|gb|EHI50487.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida
01-B526]
Length = 450
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 88/304 (28%), Positives = 135/304 (44%), Gaps = 56/304 (18%)
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
ILG YRNK +++V +A +GF + + +TA DC + + +
Sbjct: 115 ILGMESPFAYRNKAQYAV-RGCEAGAEIGFYRKHSHDLITAD----DCAVQDSLHVELNA 169
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
+ ++++ D+ ++ ++G R L R+G G E+ + V + E
Sbjct: 170 RVRNWMREHDIAAYDEVNHTGCVRNLMTRKGFKSG--------ELMVVLVTLGE------ 215
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLS 543
A F A A+ LP+T LV + +N R+L
Sbjct: 216 ------------------ALPFEAELLATLSDLPITTLVQNINDERTN--------RILG 249
Query: 544 IPKADGEPEESNDVV--EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGP 601
+N V+ E I D I L F ISP +FFQ N + LYS ++A+L
Sbjct: 250 ---------ANNRVLLGEGVIRDKIHELEFEISPLSFFQNNPTQTDVLYSSALEYAELTG 300
Query: 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661
+ +FD+ CG GTI L LA + V+GIE SA+SDA RNA +NGI++ F KAE +
Sbjct: 301 NETVFDIYCGIGTISLFLAGKAAKVVGIESVESAISDARRNAALNGIEHTEFHVGKAEQL 360
Query: 662 MGSL 665
M L
Sbjct: 361 MPEL 364
>gi|199597997|ref|ZP_03211421.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
rhamnosus HN001]
gi|199591087|gb|EDY99169.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
rhamnosus HN001]
Length = 455
Score = 102 bits (255), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 110/428 (25%), Positives = 175/428 (40%), Gaps = 103/428 (24%)
Query: 263 AVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLKVKSAR-DVVTP------------LAH 309
A+PGE+ A ++ +D L + K++SA D VTP L H
Sbjct: 38 ALPGEVVVAEVTAI-------HDRYL--EAKTHKIRSASSDRVTPTEPLFGQIGGVELNH 88
Query: 310 MSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPL 369
++Y QL K++ +AQ L K + +G L+ +G
Sbjct: 89 LAYPAQLRFKRDVVAQALAKF---------------------KPLGWQHYDLKPTIGMTH 127
Query: 370 VNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCP-----NVSEIACKYASI 424
YRNK +F V + G+ R G+ A P + + K +
Sbjct: 128 PTHYRNKAQFPVRE----------INGHVRAGLYAPGSHRLIPLTHFLTQAPLTMKVVTT 177
Query: 425 FQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQV 484
+ L+ +P++N K++G + L VRE S G+ QV
Sbjct: 178 LCQLLEDLQIPIYNEKKHAGIVKTLVVRESFSAGQ----------------------VQV 215
Query: 485 SSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSI 544
+ T NS +L K A TA + LP+ + Q+ + RLL+
Sbjct: 216 TFIT------NSA--KLPKQ-AQLITAIAAQLPMVVSIAQNINLGNTSLIWGKESRLLA- 265
Query: 545 PKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTL 604
G+P I +++S F +SP AF Q+N E+LY++ D L PD
Sbjct: 266 ----GQPY---------IQETLSGRTFQLSPQAFLQLNPKQTEQLYAIAKDALQLAPDDT 312
Query: 605 LFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664
L D CG GT+G++LA+R + G++ A++DA NA+ NG N R+ KAE +
Sbjct: 313 LIDAYCGIGTVGMSLANRHQSIYGMDTIPEAIADAKANAKNNGFNNTRYFVGKAETLFPK 372
Query: 665 LLKDYLNP 672
LK+ ++P
Sbjct: 373 WLKEGIHP 380
>gi|450101655|ref|ZP_21859124.1| putative RNA methyltransferase [Streptococcus mutans SF1]
gi|450170602|ref|ZP_21883566.1| putative RNA methyltransferase [Streptococcus mutans SM4]
gi|449219878|gb|EMC19820.1| putative RNA methyltransferase [Streptococcus mutans SF1]
gi|449245500|gb|EMC43835.1| putative RNA methyltransferase [Streptococcus mutans SM4]
Length = 451
Score = 102 bits (255), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 153/378 (40%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L V R + L H++Y QL K+ + L K+ G+S
Sbjct: 71 LTVDYLRTGIADLGHLTYGQQLNFKRKQVINSLSKIA---------GIS----------- 110
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
++ LG YRNK + V + + GF FR+ A+ D
Sbjct: 111 ---DIEVADTLGMDNPTAYRNKTQVPVR-RVNGQLETGF----FRKNSHALMPIEDYYIQ 162
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+ + + ++ L++ DL ++ + +G R L VR G G+ +
Sbjct: 163 DKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYTGQIM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++ S F + E++ F P +IQ+ + A
Sbjct: 210 ----LVLVTTRSKIFR---IEQMIEKIVSEF-----------PAVKSIIQNINDRNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
+ R L GE D +E D++ R+ IS +F+QVNT+ AEKLY
Sbjct: 252 FGSEFRTLY-----GE-----DTIE----DTMLGNRYIISAQSFYQVNTVMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D++DL PD + D G GTIGL+ A +V V G+E+ +AV DA +NA +N I N +V
Sbjct: 298 DFSDLAPDDTVIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
AE M S K + P
Sbjct: 358 ADSAEKAMASWSKRGIKP 375
>gi|312873424|ref|ZP_07733475.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
LEAF 2052A-d]
gi|311091108|gb|EFQ49501.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
LEAF 2052A-d]
Length = 447
Score = 102 bits (255), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 97/360 (26%), Positives = 150/360 (41%), Gaps = 78/360 (21%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ LAHM Y QLE KK + +L+K+ N K+
Sbjct: 79 LAALAHMKYERQLEFKKQQVVNLLEKVHLNK-------------------------KVND 113
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
L SP YRNK + V + + VGF FR+ + D +
Sbjct: 114 CLASPESTAYRNKAQVPVRM-VNGQLEVGF----FRKHSHDLVPMTDFLTTDKKIDAAVV 168
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
++ L++ ++P ++ K++G R L +R ++ G+ + ++L+
Sbjct: 169 AVRDILRKFNVPAYDEIKHNGEVRYLEIRRSKANGQLM----------------IVLVCL 212
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQ-GVSNVAPADAPLRLL 542
S DAVV + SL A VI +H +NV +
Sbjct: 213 HKSFNNLDAVVQA----------------IQSLDNVACVILNHNPHKTNVILGEKEY--- 253
Query: 543 SIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPD 602
I +GE I D I +L F IS +FFQ+N+L +LY+L A L D
Sbjct: 254 -ILAGNGE-----------IVDKIGDLSFKISSQSFFQINSLQTPRLYNLAIQKAQLTAD 301
Query: 603 TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
++ D G GTIGL++A V V+G+E+ AV DA +NA +NGI N + KAE++M
Sbjct: 302 DVVIDAYSGIGTIGLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGINNAEYFEGKAEELM 361
>gi|289422763|ref|ZP_06424602.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
anaerobius 653-L]
gi|289156818|gb|EFD05444.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
anaerobius 653-L]
Length = 452
Score = 102 bits (255), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 99/357 (27%), Positives = 152/357 (42%), Gaps = 74/357 (20%)
Query: 312 YSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVN 371
Y QLE KK+ + + K L E+ + GI SP
Sbjct: 87 YEKQLEIKKDQVLDLFDK------------AGLKEY------------EFVGINPSPSSV 122
Query: 372 GYRNKCEFSVGYSLQAKPTVGFM--LGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFL 429
YRNK E++ G + P M +G F + VT DC V + + ++F
Sbjct: 123 AYRNKMEYTFGDEYKDGPLSLGMHKVGRFIDIVTVD----DCRIVDQDFKTIMTRTRDFF 178
Query: 430 QQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATF 489
++ LP + F + G+ R L VR+G + G+ L VNI V+S+
Sbjct: 179 EEKGLPYYRSFNHQGYLRHLVVRKGENTGE------LMVNI-------------VTSSQL 219
Query: 490 DDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADG 549
D + E+ K F G S L ++ + G+++ D +R+L
Sbjct: 220 DYNM--DEY----KEFLLGLDLDSE---LVGVLHTINDGLADAVQCD-EMRILY------ 263
Query: 550 EPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWA-DLGPDTLLFDV 608
D ++ + LRF +SP +FFQ NT AE LY++ +A D G ++FD+
Sbjct: 264 ----GRDY----FYEEVLGLRFKVSPFSFFQTNTKGAEALYTIARKFAGDRGHGKVVFDL 315
Query: 609 CCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
GTGTIG +A V GIE+ AV A++NA +N + NC F+ V+ SL
Sbjct: 316 YSGTGTIGQLMAKTAKKVYGIELVEEAVVAANQNAVLNNLDNCEFIAGDVAKVVSSL 372
>gi|161508136|ref|YP_001578104.1| methyltransferase [Lactobacillus helveticus DPC 4571]
gi|160349125|gb|ABX27799.1| Methyltransferase [Lactobacillus helveticus DPC 4571]
Length = 448
Score = 102 bits (255), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 105/402 (26%), Positives = 164/402 (40%), Gaps = 76/402 (18%)
Query: 262 SAVPGELAEAHASSNGHEDGNGNDEGLAGDG-SGLKVKSARDVVTPLAHMSYSVQLEHKK 320
+A+PGE+ +A + + + +KV + V T LAH+ Y QLE K+
Sbjct: 33 NALPGEVVKAQILKDKKSYAFARISEIVKESPDRVKVPLRQYVQTGLAHLKYDKQLEFKQ 92
Query: 321 NSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFS 380
+ ++L K + K +LP SPL GYRNK +
Sbjct: 93 KQVKELLSKAHLDQIKVAE---TLP---------------------SPLETGYRNKAQVP 128
Query: 381 VGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRF 440
V ++ + +GF + + V + + P + + ++ L++ +P ++
Sbjct: 129 VR-MVKGQLEIGFFRRHSHDLVPLEDFFTNDPEIDRVLLA----VRDILREKRIPAYDEE 183
Query: 441 KNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFER 500
K+ G R L VR G +AT D VV +R
Sbjct: 184 KHQGQVRYLEVRRG-------------------------------TATGDMMVVLVCLDR 212
Query: 501 LAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEA 560
P L I++ GV ++ P R I GE + + +
Sbjct: 213 -----------DFPGLHAVVDEIKEIAGVKSIFLNHNPKRTNVIL---GE-HDYHLWGKR 257
Query: 561 RIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLA 620
I D I +L F ISP +FFQ+N+L LY L + A L D L+ D G GTIGL+ A
Sbjct: 258 YIDDKIGDLTFEISPQSFFQINSLQTPHLYKLAINQAGLTKDDLIVDAYSGIGTIGLSAA 317
Query: 621 HRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
V V G+E+ +AV DA NA +N I N ++ KAE++M
Sbjct: 318 KYVKEVRGVEVIKAAVKDAKNNARLNQIHNAKYYVGKAEELM 359
>gi|421838985|ref|ZP_16272678.1| 23S rRNA (uracil-5-)-methyltransferase RumA, partial [Clostridium
botulinum CFSAN001627]
gi|409736425|gb|EKN37839.1| 23S rRNA (uracil-5-)-methyltransferase RumA, partial [Clostridium
botulinum CFSAN001627]
Length = 440
Score = 102 bits (255), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 86/316 (27%), Positives = 134/316 (42%), Gaps = 49/316 (15%)
Query: 348 IMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVG-YSLQAKPTVGFMLGNFREGVTAVE 406
+ KS+EI G G+ SP YRNK EF+ G T+G + N + V+
Sbjct: 101 LFKSKEIKGFD--FLGVEKSPEEYEYRNKMEFTFGDMEKGGDLTLGMHVKNRNFSIVTVD 158
Query: 407 EPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENL 466
+C V + + + LP + + GF R L +R+ ++ G+ L
Sbjct: 159 ---NCEIVDRDFRNILTTVVNYFNEKRLPKYRVMSHEGFLRNLVIRKAKNTGEIL----- 210
Query: 467 EVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDH 526
+NI S FD F+ + G + ++ +
Sbjct: 211 ------INI------VTTSQMEFD-------FKEIVDMLLKGECKGE----IKGILHTIN 247
Query: 527 QGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAA 586
+S+V D L +L D I + + L+F I+P AFFQ N+ A
Sbjct: 248 DTLSDVVQVDK-LEILY----------GRD----YIIEELLGLKFKIAPEAFFQTNSKGA 292
Query: 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN 646
EKLYS+ D+ ++FD+ CGTGTIG +A R VIG+E+ AV A+ NA++N
Sbjct: 293 EKLYSIVKDFLGDASSKVVFDLYCGTGTIGQIVAPRAKKVIGVELIEEAVKAANENAKLN 352
Query: 647 GIKNCRFVCAKAEDVM 662
G+ NC F+ V+
Sbjct: 353 GLNNCEFIAGDVAKVI 368
>gi|422862228|ref|ZP_16908860.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK408]
gi|327474823|gb|EGF20228.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK408]
Length = 469
Score = 102 bits (255), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 104/412 (25%), Positives = 166/412 (40%), Gaps = 77/412 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDG----SGLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGEL + G G E L + R + L H++Y QL
Sbjct: 46 ENALPGELIRMRVLKVNKKIGFGKVEEFLRTSDQRNENLDMAYLRTGIADLGHLNYPAQL 105
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K+ + L K+ + P + + + PL GYRNK
Sbjct: 106 DFKRKQVKDSLYKIAGLSDVEVPPTLGMEQ---------------------PL--GYRNK 142
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + + + + P + ++ ++ L++ DL
Sbjct: 143 AQVPVR-RVNGQLETGFFRKNSHDLLPIEDFYIQDPVIDQVIL----FTRDLLRRFDLKP 197
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
++ + +G R L VR G G E+M+I + V
Sbjct: 198 YDEQEKTGLIRNLVVRRGHYLG------------------EIMVILVTTRPKI--FRVER 237
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESND 556
E L +AF P ++Q+ N P +A I D D
Sbjct: 238 LMEHLTEAF-----------PAIKSIMQN----INDQPGNA------IFGKDWRTLYGQD 276
Query: 557 VVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIG 616
I D + F I+ AF+QVNT AEKLY D+++L D ++ D G GTIG
Sbjct: 277 Y----ITDQMLGNDFQIAAPAFYQVNTEMAEKLYQTAIDFSELTADDVVLDAYSGIGTIG 332
Query: 617 LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
L++A +V V G+E+ AV ++ +NAEIN I N +VCA AE+ + + LK+
Sbjct: 333 LSVAKQVKQVYGVEVIPEAVENSRKNAEINDITNASYVCAPAEEAIQNWLKE 384
>gi|449959267|ref|ZP_21810100.1| putative RNA methyltransferase [Streptococcus mutans 4VF1]
gi|450138035|ref|ZP_21871956.1| putative RNA methyltransferase [Streptococcus mutans NLML1]
gi|449169281|gb|EMB72060.1| putative RNA methyltransferase [Streptococcus mutans 4VF1]
gi|449234483|gb|EMC33489.1| putative RNA methyltransferase [Streptococcus mutans NLML1]
Length = 451
Score = 102 bits (255), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 153/378 (40%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L V R + L H++Y QL K+ + L K+ G+S
Sbjct: 71 LTVDYLRTGIADLGHLTYGQQLNFKRKQVINSLSKIA---------GIS----------- 110
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
++ LG YRNK + V + + GF FR+ A+ D
Sbjct: 111 ---DIEVADTLGMDNPTAYRNKAQVPVR-RVNGQLETGF----FRKNSHALMPIEDYYIQ 162
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+ + + ++ L++ DL ++ + +G R L VR G G+ +
Sbjct: 163 DKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYTGQIM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++ S F + E++ F P +IQ+ + A
Sbjct: 210 ----LVLVTTRSKIFR---IEQMIEKIVSEF-----------PAVKSIIQNINDRNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
+ R L GE D +E D++ R+ IS +F+QVNT+ AEKLY
Sbjct: 252 FGSEFRTLY-----GE-----DTIE----DTMLGNRYVISAQSFYQVNTIMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D++DL PD + D G GTIGL+ A +V V G+E+ +AV DA +NA +N I N +V
Sbjct: 298 DFSDLTPDDTVIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
AE M S K + P
Sbjct: 358 ADSAEKAMASWSKRGIKP 375
>gi|422851360|ref|ZP_16898030.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK150]
gi|325694948|gb|EGD36853.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK150]
Length = 456
Score = 102 bits (255), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 103/412 (25%), Positives = 167/412 (40%), Gaps = 77/412 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDG----SGLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGEL + G G E L + R + L H++Y QL
Sbjct: 33 ENALPGELIRMRVLKVNKKIGFGKVEEFLRTSDQRNENLDMAYLRTGIADLGHLNYPAQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K+ + L K+ + P + + + PL GYRNK
Sbjct: 93 DFKRKQVKDSLYKIAGLSDVEVPPTLGMEQ---------------------PL--GYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + + + + P + ++ ++ L++ DL
Sbjct: 130 AQVPVR-RVNGQLETGFFRKNSHDLLPIEDFYIQDPVIDQVIL----FTRDLLRRFDLKP 184
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
++ + +G R L VR G G E+M+I + V
Sbjct: 185 YDEQEKTGLIRNLVVRRGHYSG------------------EIMVILVTTRPKIFR--VEQ 224
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESND 556
+RL +AF P ++Q+ N P +A I D D
Sbjct: 225 LMDRLTEAF-----------PAIKSIMQN----INDQPGNA------IFGKDWRMLYGQD 263
Query: 557 VVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIG 616
I D + F I+ AF+QVNT AEKLY D+++L + ++ D G GTIG
Sbjct: 264 Y----ITDQMLGNDFQIAAPAFYQVNTEMAEKLYQTAIDFSELTTEDVVLDAYSGIGTIG 319
Query: 617 LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
L++A +V V G+E+ AV ++ +NA INGI N +VCA AE+ + + LK+
Sbjct: 320 LSVAKQVKQVYGVEVIPEAVENSQKNAAINGITNASYVCAPAEEAIQNWLKE 371
>gi|259501117|ref|ZP_05744019.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
DSM 13335]
gi|302190435|ref|ZP_07266689.1| RNA methyltransferase [Lactobacillus iners AB-1]
gi|309806175|ref|ZP_07700192.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
LactinV 03V1-b]
gi|259167811|gb|EEW52306.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
DSM 13335]
gi|308167456|gb|EFO69618.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
LactinV 03V1-b]
Length = 450
Score = 102 bits (255), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 97/360 (26%), Positives = 150/360 (41%), Gaps = 78/360 (21%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ LAHM Y QLE KK + +L+K+ N K+
Sbjct: 79 LAALAHMKYERQLEFKKKQVVNLLEKVHLNK-------------------------KVND 113
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
L SP YRNK + V + + VGF FR+ + D +
Sbjct: 114 CLASPESTAYRNKAQVPVRM-VNGQLEVGF----FRKHSHDLVPMTDFLTTDKKIDAAVV 168
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
++ L++ ++P ++ K++G R L +R ++ G+ + ++L+
Sbjct: 169 AVRDILRKFNVPAYDEIKHNGEVRYLEIRRSKANGQLM----------------IVLVCL 212
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQ-GVSNVAPADAPLRLL 542
S DAVV + SL A VI +H +NV +
Sbjct: 213 HKSFNNLDAVVQA----------------IKSLDNVACVILNHNPHKTNVILGEKEY--- 253
Query: 543 SIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPD 602
I +GE I D I +L F IS +FFQ+N+L +LY+L A L D
Sbjct: 254 -ILAGNGE-----------IVDKIGDLSFKISSQSFFQINSLQTPRLYNLAIQKAQLTAD 301
Query: 603 TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
++ D G GTIGL++A V V+G+E+ AV DA +NA +NGI N + KAE++M
Sbjct: 302 DVVIDAYSGIGTIGLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGINNAEYFEGKAEELM 361
>gi|414563650|ref|YP_006042611.1| RNA methyltransferase [Streptococcus equi subsp. zooepidemicus ATCC
35246]
gi|338846715|gb|AEJ24927.1| RNA methyltransferase [Streptococcus equi subsp. zooepidemicus ATCC
35246]
Length = 451
Score = 102 bits (255), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 102/416 (24%), Positives = 163/416 (39%), Gaps = 77/416 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDG----SGLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGE+ + G G E L V R + L H+ Y QL
Sbjct: 33 ENALPGEIIQMRVLKVNKNSGFGKVEAYLTTSPVRQEKLDVTYLRTGIADLGHLLYPQQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K+ + L K+ A + V + E I G YRNK
Sbjct: 93 LFKQKQVQDSLYKI------AGISNVEVKETI-----------------GMEYPYAYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF + E V + + + + + ++ L++ D+
Sbjct: 130 AQVPVR-RVNGQLETGFFRKHSHELVPISDFYIQDKEIDRLI----AFTRDLLRRFDIKP 184
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
++ + SG R L VR G G E+ML+ + +N
Sbjct: 185 YDEKEQSGLIRHLVVRRGHYSG------------------EIMLVLVTTRPKIFR--INQ 224
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESND 556
+ L F A +T+++ + +NV A RL
Sbjct: 225 MIDSLVAEFPA----------ITSILQNINDKPTNVIFGKAFTRLYG------------- 261
Query: 557 VVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIG 616
+ I D+I ++CIS +F+QVNT AEKLY D+++L D ++ D G GTIG
Sbjct: 262 --KETITDTILGNQYCISAQSFYQVNTTMAEKLYQTAIDFSELTADDVVIDAYSGIGTIG 319
Query: 617 LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
L+ A V V G+E+ +AV DA +NA NGI N +V AE+ M + ++ + P
Sbjct: 320 LSFAKEVKAVYGVEVIEAAVRDAEKNAARNGITNAHYVADSAENAMANWCQEGIKP 375
>gi|328957913|ref|YP_004375299.1| putative RNA methyltransferase [Carnobacterium sp. 17-4]
gi|328674237|gb|AEB30283.1| putative RNA methyltransferase [Carnobacterium sp. 17-4]
Length = 458
Score = 102 bits (255), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 106/414 (25%), Positives = 160/414 (38%), Gaps = 93/414 (22%)
Query: 261 ESAVPGELAEAHASSNGHEDG---------NGNDEGLAGDGSGLKVKSARDVVTPLAHMS 311
E+A+PGE E G G + D + D + +V +TPL HM
Sbjct: 40 ENALPGEQVEVKIHKTGKSFGYAKVLNRLNSSEDRVVIQDENYTRVG-----ITPLQHMR 94
Query: 312 YSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVN 371
Y QL KK + ++++ + LPE +P + +P +
Sbjct: 95 YPAQLNFKKQQVMNSMQRIAK-----------LPE----------VPVYDTIGMANP--S 131
Query: 372 GYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQ 431
GYRNK + V + K T GF N E + + P + E I +E+
Sbjct: 132 GYRNKAQIPVR-KINDKLTTGFFRKNSHEVIPMENFYIQDPKIDETIIAVRDIMREY--- 187
Query: 432 SDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDD 491
+ +N +N+G R + VR G G E+M++
Sbjct: 188 -GVKPYNENENTGNLRHIIVRRGYYTG------------------EIMIVL--------- 219
Query: 492 AVVNSEFERLAKAFAAGATASS--PSLPLTALVIQD-HQGVSNVAPADAPLRLLSIPKAD 548
R AK F ++P ++Q+ + +NV D + L
Sbjct: 220 ------VTRTAKLFPTSKIIPDILEAIPEVVSIVQNVNPKHTNVILGDDAIVLYG----- 268
Query: 549 GEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDV 608
E + D++ F IS +F+QVN L EKLY D+A+L + + D
Sbjct: 269 ----------EDKFRDTLLGNTFEISHRSFYQVNPLQTEKLYQTVLDFAELTGEETVIDA 318
Query: 609 CCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
G GTI LTLA V GIE+ AV +A NAE+N I+N F AE+VM
Sbjct: 319 YSGIGTITLTLAKNAKHVYGIEIIEPAVENAKANAELNNIENVTFEAGAAEEVM 372
>gi|116513601|ref|YP_812507.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
delbrueckii subsp. bulgaricus ATCC BAA-365]
gi|385815209|ref|YP_005851600.1| RNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus
2038]
gi|418030034|ref|ZP_12668551.1| Methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1632]
gi|418035311|ref|ZP_12673768.1| Methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1519]
gi|116092916|gb|ABJ58069.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
delbrueckii subsp. bulgaricus ATCC BAA-365]
gi|325125246|gb|ADY84576.1| RNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus
2038]
gi|354688497|gb|EHE88536.1| Methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1632]
gi|354690300|gb|EHE90248.1| Methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1519]
Length = 451
Score = 102 bits (255), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 97/356 (27%), Positives = 147/356 (41%), Gaps = 75/356 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
LAH+ Y QLE K+ + ++L K + K +LP
Sbjct: 82 LAHLKYDKQLEFKQKQVKELLSKAHLDQIKVAE---TLP--------------------- 117
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
SPL GYRNK + V ++ + +GF + + V + + P + + +
Sbjct: 118 SPLETGYRNKAQVPVR-MVKGQLEIGFFRRHSHDLVPLEDFFTNDPEIDRVLLA----VR 172
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
+ L++ +P ++ K+ G R L VR G +
Sbjct: 173 DILREKRIPAYDEEKHQGQVRYLEVRRG-------------------------------T 201
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
AT D VV +R P L I++ GV ++ P R I
Sbjct: 202 ATGDMMVVLVCLDR-----------DFPGLHAVVDEIKEIAGVKSIFLNHNPKRTNVIL- 249
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
GE + + + I D I +L F ISP +FFQ+N+L +LY L D A L D L+
Sbjct: 250 --GE-HDYHLWGKRYIDDKIGDLTFEISPQSFFQINSLQTPRLYKLAIDQAGLTKDDLIV 306
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
D G GTIGL+ A V V G+E+ +AV DA NA +N I N ++ KAE++M
Sbjct: 307 DAYSGIGTIGLSAAKYVKEVRGVEVVKAAVKDAKNNARLNQIHNAKYYVGKAEELM 362
>gi|299144530|ref|ZP_07037609.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus sp. oral
taxon 386 str. F0131]
gi|298517618|gb|EFI41358.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus sp. oral
taxon 386 str. F0131]
Length = 520
Score = 102 bits (255), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 66/108 (61%)
Query: 559 EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLT 618
E + D + +F +SP +FFQVNT EKLY D+ ++ ++FD+ CG GTI L
Sbjct: 233 EDYLTDELCGFKFKLSPVSFFQVNTTQTEKLYQEAIDYLEINKQDIIFDLYCGIGTISLF 292
Query: 619 LAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
A VIG+E+ +A+ DA +NAE N + N RF+C K+E+++ LL
Sbjct: 293 AARNAKKVIGVEIVENAIEDARKNAEFNSVDNVRFICGKSEEILEKLL 340
>gi|406881326|gb|EKD29426.1| TrmA [uncultured bacterium (gcode 4)]
Length = 466
Score = 102 bits (255), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 136/313 (43%), Gaps = 53/313 (16%)
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTA---VEEPVDCPNVSEIACK 420
I+ SP ++GYRNK EFS G + K + FR G A + +DC +
Sbjct: 119 IVASPEIHGYRNKVEFSWGKYISFKEDIR---DEFRFGFHAQWQFDRIIDCTYCVLADEE 175
Query: 421 YASIFQE---FLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISE 477
++F E F + S LP ++ N GFWR VR+ R E
Sbjct: 176 INALFHEVDTFSRASGLPTYDPKTNIGFWRHFVVRKARFT------------------DE 217
Query: 478 VMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADA 537
+MLI V+ TF + +E + + FA A P + L++ + G ++V +A
Sbjct: 218 IMLIFSVND-TFPEYTKKNEEDIIV--FAEQLIAQFPHIASVYLLL--NSGRADVVTGEA 272
Query: 538 PLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWA 597
L G+ A I + + F I+P +FFQ N+L AEKLY D +
Sbjct: 273 VL-------LKGK---------ATITEHLLGKSFEINPKSFFQTNSLGAEKLYQTALDLS 316
Query: 598 DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAK 657
LL D+ GTGT+G+ + R V +E+ A D +NA N I N FV AK
Sbjct: 317 SSRWGVLL-DLYAGTGTLGILFSDRFEQVYSVELVPQASQDGEKNARRNSIDNIEFVNAK 375
Query: 658 AEDVMGSLLKDYL 670
E L+D+L
Sbjct: 376 VE----VFLEDFL 384
>gi|331269931|ref|YP_004396423.1| TrmA family RNA methyltransferase [Clostridium botulinum BKT015925]
gi|329126481|gb|AEB76426.1| RNA methyltransferase, TrmA family [Clostridium botulinum
BKT015925]
Length = 450
Score = 102 bits (255), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 103/357 (28%), Positives = 149/357 (41%), Gaps = 77/357 (21%)
Query: 310 MSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPL 369
+SY QLE KK+ + KL NA G+S E++ GI GSP
Sbjct: 85 LSYEKQLEIKKDQVL----KLFENA------GISGFEFL--------------GIQGSPE 120
Query: 370 VNGYRNKCEFSVG-YSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEF 428
YRNK EF+ G + T+G G+ + +E C V E+
Sbjct: 121 EFEYRNKMEFTFGDMEKGGELTLGMHAQGKSFGIISADE---CKIVDSDFNIILKTVLEY 177
Query: 429 LQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML-IAQVSSA 487
+ DLP + + G+ R L +R+GR N ++M+ + S
Sbjct: 178 FRGKDLPHYRIMSHEGYLRNLVIRKGR------------------NTQDIMVNLVTTSQR 219
Query: 488 TFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKA 547
FD SEF L K L ++ + +S+V AD
Sbjct: 220 DFD----LSEFVELLKGLNYKG-------ELKGILHTVNDSLSDVVQAD----------- 257
Query: 548 DGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
S +V+ R I + + L+F ISP +FFQ NT AE LYS+ D+ ++
Sbjct: 258 ------SMEVLFGRDYIMEEVLGLKFKISPFSFFQTNTKGAEALYSIVRDFMGDAKSKVV 311
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
FD+ CGTGTIG AH VIGIE+ A A+ NA++NG+ NC F+ V+
Sbjct: 312 FDLYCGTGTIGQIAAHNASKVIGIELIEEAAKAANENAKLNGLNNCEFLAGDVAKVI 368
>gi|422826606|ref|ZP_16874785.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK678]
gi|324994724|gb|EGC26637.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK678]
Length = 464
Score = 102 bits (255), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 107/412 (25%), Positives = 168/412 (40%), Gaps = 77/412 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDG----SGLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGEL + G G E L + R + L H++YS QL
Sbjct: 46 ENALPGELIRMRVLKVNKKIGFGKVEEFLRTSDQRNENLDMAYLRTGIADLGHLNYSAQL 105
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K+ + L K+ G+S ++ LP LG GYRNK
Sbjct: 106 DFKRKQVKDSLYKIA---------GLS---------DVEVLPT-----LGMEQPLGYRNK 142
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + + + + P + ++ ++ L++ DL
Sbjct: 143 AQVPVR-RVNGQLETGFFRKNSHDLLPIEDFYIQDPVIDQVIL----FTRDLLRRFDLKP 197
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
++ + +G R L VR G G E+M+I + V
Sbjct: 198 YDEQEKTGLIRNLVVRRGHYSG------------------EIMVILVTTRPKIFR--VEQ 237
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESND 556
E L +AF P ++Q+ N P +A I D +
Sbjct: 238 LMECLTEAF-----------PAIKSIMQN----INDQPGNA------IFGKDWRTLYGQN 276
Query: 557 VVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIG 616
I D + F I+ AF+QVNT AEKLY D+++L D ++ D G GTIG
Sbjct: 277 Y----ITDQMLGNDFQIAAPAFYQVNTEMAEKLYQTAIDFSELTADDVVLDAYSGIGTIG 332
Query: 617 LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
L++A V V G+E+ AV ++ +NA INGI N +VCA AE+ + + LK+
Sbjct: 333 LSVAKHVKQVYGVEVIPEAVENSRKNAAINGITNASYVCASAEEAIQNWLKE 384
>gi|450050762|ref|ZP_21840445.1| putative RNA methyltransferase [Streptococcus mutans NFSM1]
gi|449202395|gb|EMC03316.1| putative RNA methyltransferase [Streptococcus mutans NFSM1]
Length = 451
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 153/378 (40%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L V R + L H++Y QL K+ + L K+ G+S
Sbjct: 71 LTVDYLRTGIADLGHLTYGQQLNFKRKQVINSLSKIA---------GIS----------- 110
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
++ LG YRNK + V + + GF FR+ A+ D
Sbjct: 111 ---DIEVADTLGMDNPTAYRNKAQVPVR-RVNGQLETGF----FRKNSHALMPIEDYYIQ 162
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+ + + ++ L++ DL ++ + +G R L VR G G+ +
Sbjct: 163 DKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYTGQIM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++ S F + E++ F P +IQ+ + A
Sbjct: 210 ----LVLVTTRSKIFR---IEQMVEKIVSEF-----------PAVKSIIQNINDRNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
+ R L GE D +E D++ R+ IS +F+QVNT+ AEKLY
Sbjct: 252 FGSEFRTLY-----GE-----DTIE----DTMLGNRYIISAQSFYQVNTVMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D++DL PD + D G GTIGL+ A +V V G+E+ +AV DA +NA +N I N +V
Sbjct: 298 DFSDLAPDDTVIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
AE M S K + P
Sbjct: 358 ADSAEKAMASWSKRGIKP 375
>gi|450061908|ref|ZP_21844032.1| putative RNA methyltransferase [Streptococcus mutans NLML5]
gi|450104861|ref|ZP_21859494.1| putative RNA methyltransferase [Streptococcus mutans SF14]
gi|450176169|ref|ZP_21885623.1| putative RNA methyltransferase [Streptococcus mutans SM1]
gi|449206490|gb|EMC07192.1| putative RNA methyltransferase [Streptococcus mutans NLML5]
gi|449225332|gb|EMC24939.1| putative RNA methyltransferase [Streptococcus mutans SF14]
gi|449245731|gb|EMC44059.1| putative RNA methyltransferase [Streptococcus mutans SM1]
Length = 451
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 153/378 (40%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L V R + L H++Y QL K+ + L K+ G+S
Sbjct: 71 LTVDYLRTGIADLGHLTYGQQLNFKRKQVINSLSKIA---------GIS----------- 110
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
++ LG YRNK + V + + GF FR+ A+ D
Sbjct: 111 ---DIEVADTLGMDNPTAYRNKAQVPVR-RVNGQLETGF----FRKNSHALMPIEDYYIQ 162
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+ + + ++ L++ DL ++ + +G R L VR G G+ +
Sbjct: 163 DKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYTGQIM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++ S F + E++ F P +IQ+ + A
Sbjct: 210 ----LVLVTTRSKIFR---IEQMIEKIVSEF-----------PAVKSIIQNINDRNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
+ R L GE D +E D++ R+ IS +F+QVNT+ AEKLY
Sbjct: 252 FGSEFRTLY-----GE-----DTIE----DTMLGNRYVISAQSFYQVNTVMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D++DL PD + D G GTIGL+ A +V V G+E+ +AV DA +NA +N I N +V
Sbjct: 298 DFSDLTPDDTVIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
AE M S K + P
Sbjct: 358 ADSAEKAMASWSKRGIKP 375
>gi|349611721|ref|ZP_08890951.1| hypothetical protein HMPREF1027_00378 [Lactobacillus sp. 7_1_47FAA]
gi|348608186|gb|EGY58171.1| hypothetical protein HMPREF1027_00378 [Lactobacillus sp. 7_1_47FAA]
Length = 447
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 97/360 (26%), Positives = 150/360 (41%), Gaps = 78/360 (21%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ LAHM Y QLE KK + +L+K+ N K+
Sbjct: 79 LAALAHMKYERQLEFKKQQVVNLLEKVHLNK-------------------------KVND 113
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
L SP YRNK + V + + VGF FR+ + D +
Sbjct: 114 CLASPESTAYRNKAQVPVRM-VNGQLEVGF----FRKHSHDLVPMTDFLTTDKKIDAAVV 168
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
++ L++ ++P ++ K++G R L +R ++ G+ + ++L+
Sbjct: 169 AVRDILRKFNVPAYDEIKHNGEVRYLEIRRSKANGQLM----------------IVLVCL 212
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQ-GVSNVAPADAPLRLL 542
S DAVV + SL A VI +H +NV +
Sbjct: 213 HKSFKNLDAVVQA----------------IQSLDNVACVILNHNPHKTNVILGEKEY--- 253
Query: 543 SIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPD 602
I +GE I D I +L F IS +FFQ+N+L +LY+L A L D
Sbjct: 254 -ILAGNGE-----------IVDKIGDLSFKISSQSFFQINSLQTPRLYNLAIQKAQLTSD 301
Query: 603 TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
++ D G GTIGL++A V V+G+E+ AV DA +NA +NGI N + KAE++M
Sbjct: 302 DVVIDAYSGIGTIGLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGINNAEYFEGKAEELM 361
>gi|332686169|ref|YP_004455943.1| TrmA family RNA methyltransferase [Melissococcus plutonius ATCC
35311]
gi|332370178|dbj|BAK21134.1| RNA methyltransferase, TrmA family [Melissococcus plutonius ATCC
35311]
Length = 460
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 99/407 (24%), Positives = 167/407 (41%), Gaps = 79/407 (19%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGND---EGLAGDGSGLKVKSARDV-VTPLAHMSYSVQL 316
E+++PGE+ + G++ G + ++ + LK + PL HMSY QL
Sbjct: 37 ENSLPGEIVDILIVKVGNKFAFGKVIEWQKISPERRDLKNYVLLQTGIAPLQHMSYGEQL 96
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K+ + ++KK+ + P+ LP +G + GYRNK
Sbjct: 97 LFKQKQVKNVMKKIAK-----LPDTPVLPT------------------IGMAVPKGYRNK 133
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ + + GF N E + + + P + + + ++ L++ +
Sbjct: 134 AQIP-ARKVDNQLETGFFRKNSHELIPIQDFYIQDPKIDQAIL----VIRDILRRFQVKP 188
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
+N +++G RQ+ +R G E+M+I + +
Sbjct: 189 YNEQEHTGNLRQIIIRRGHYS------------------HEMMVILVTRTKKLFNH---- 226
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLLSIPKADGEPEESN 555
E+L K LP T +IQ+ + +NV + + L P
Sbjct: 227 --EQLVKEIMQ-------KLPETISIIQNINPDKTNVIMGEESILLYGNP---------- 267
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
I+D + + IS +F+QVNT E LY ++A L P + D CG GTI
Sbjct: 268 -----YINDQLLGKNYHISAASFYQVNTEQTEYLYKTAIEFAGLSPTDQVVDAYCGIGTI 322
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
L+LA +V V G+E+ +A+ DA NA IN I+NC F KAE+VM
Sbjct: 323 ALSLAEQVKHVYGVEIIEAAILDARENAAINQIENCTFNIGKAEEVM 369
>gi|450000586|ref|ZP_21825244.1| putative RNA methyltransferase [Streptococcus mutans N29]
gi|449185683|gb|EMB87560.1| putative RNA methyltransferase [Streptococcus mutans N29]
Length = 453
Score = 102 bits (254), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 152/378 (40%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L V R + L H++Y QL K+ + L K+ G+S
Sbjct: 71 LTVDYLRTGIADLGHLTYGQQLNFKRKQVINSLSKIA---------GIS----------- 110
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
++ LG YRNK + V + + GF FR+ A+ D
Sbjct: 111 ---DIEVADTLGMDNPTAYRNKAQVPVR-RVNGQLETGF----FRKNSHALMPIEDYYIQ 162
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+ + + ++ L++ DL ++ +G R L VR G G+ +
Sbjct: 163 DKEIDRLINFTRDLLRRFDLKPYDEKDQTGLIRNLVVRRGHYTGQIM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++ S F + E++ F P +IQ+ + A
Sbjct: 210 ----LVLVTTRSKIFR---IEQMIEKIVSEF-----------PAVKSIIQNINDRNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
+ R L GE D +E D++ R+ IS +F+QVNT+ AEKLY
Sbjct: 252 FGSEFRTLY-----GE-----DTIE----DTMLGNRYIISAQSFYQVNTVMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D++DL PD + D G GTIGL+ A +V V G+E+ +AV DA +NA +N I N +V
Sbjct: 298 DFSDLAPDDTVIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
AE M S K + P
Sbjct: 358 ADSAEKAMASWSKRGIKP 375
>gi|422823303|ref|ZP_16871491.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK405]
gi|422855238|ref|ZP_16901896.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK1]
gi|422865215|ref|ZP_16911840.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK1058]
gi|324993953|gb|EGC25872.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK405]
gi|327463215|gb|EGF09536.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK1]
gi|327489947|gb|EGF21736.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK1058]
Length = 465
Score = 102 bits (254), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 107/412 (25%), Positives = 168/412 (40%), Gaps = 77/412 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDG----SGLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGEL + G G E L + R + L H++YS QL
Sbjct: 46 ENALPGELIRMRVLKVNKKIGFGKVEEFLRTSDQRNENLDMAYLRTGIADLGHLNYSAQL 105
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K+ + L K+ G+S ++ LP LG GYRNK
Sbjct: 106 DFKRKQVKDSLYKIA---------GLS---------DVEVLPT-----LGMEQPLGYRNK 142
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + + + + P + ++ ++ L++ DL
Sbjct: 143 AQVPVR-RVNGQLETGFFRKNSHDLLPIEDFYIQDPVIDQVIL----FTRDLLRRFDLKP 197
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
++ + +G R L VR G G E+M+I + V
Sbjct: 198 YDEQEKTGLIRNLVVRRGHYSG------------------EIMVILVTTRPKIFR--VEQ 237
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESND 556
E L +AF P ++Q+ N P +A I D +
Sbjct: 238 LMECLTEAF-----------PAIKSIMQN----INDQPGNA------IFGKDWRTLYGQN 276
Query: 557 VVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIG 616
I D + F I+ AF+QVNT AEKLY D+++L D ++ D G GTIG
Sbjct: 277 Y----ITDQMLGNDFQIAAPAFYQVNTEMAEKLYQTAIDFSELTADDVVLDAYSGIGTIG 332
Query: 617 LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
L++A V V G+E+ AV ++ +NA INGI N +VCA AE+ + + LK+
Sbjct: 333 LSVAKHVKQVYGVEVIPEAVENSRKNAAINGITNASYVCASAEEAIQNWLKE 384
>gi|387786403|ref|YP_006251499.1| putative RNA methyltransferase [Streptococcus mutans LJ23]
gi|379132804|dbj|BAL69556.1| putative RNA methyltransferase [Streptococcus mutans LJ23]
Length = 451
Score = 102 bits (254), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 153/378 (40%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L V R + L H++Y QL K+ + L K+ G+S
Sbjct: 71 LTVDYLRTGIADLGHLTYGQQLNFKRKQVINSLSKIA---------GIS----------- 110
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
++ LG YRNK + V + + GF FR+ A+ D
Sbjct: 111 ---DIEVADTLGMDNPTAYRNKAQVPVR-RVNGQLETGF----FRKNSHALMPIEDYYIQ 162
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+ + + ++ L++ DL ++ + +G R L VR G G+ +
Sbjct: 163 DKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYTGQIM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++ S F + E++ F P +IQ+ + A
Sbjct: 210 ----LVLVTTRSKIFR---IEQMIEKIISEF-----------PAVKSIIQNINDRNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
+ R L GE D +E D++ R+ IS +F+QVNT+ AEKLY
Sbjct: 252 FGSEFRTLY-----GE-----DTIE----DTMLGNRYIISAQSFYQVNTVMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D++DL PD + D G GTIGL+ A +V V G+E+ +AV DA +NA +N I N +V
Sbjct: 298 DFSDLAPDDTVIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
AE M S K + P
Sbjct: 358 ADSAEKAMASWSKRGIKP 375
>gi|449990523|ref|ZP_21821591.1| putative RNA methyltransferase [Streptococcus mutans NVAB]
gi|449181612|gb|EMB83687.1| putative RNA methyltransferase [Streptococcus mutans NVAB]
Length = 454
Score = 102 bits (254), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 153/378 (40%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L V R + L H++Y QL K+ + L K+ G+S
Sbjct: 71 LTVDYLRTGIADLGHLTYGQQLNFKRKQVINSLSKIA---------GIS----------- 110
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
++ LG YRNK + V + + GF FR+ A+ D
Sbjct: 111 ---DIEVADTLGMDNPTAYRNKAQVPVR-RVNGQLETGF----FRKNSHALMPIEDYYIQ 162
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+ + + ++ L++ DL ++ + +G R L VR G G+ +
Sbjct: 163 DKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYTGQIM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++ S F + E++ F P +IQ+ + A
Sbjct: 210 ----LVLVTTRSKIFR---IEQMVEKIVSEF-----------PAVKSIIQNINDRNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
+ R L GE D +E D++ R+ IS +F+QVNT+ AEKLY
Sbjct: 252 FGSEFRTLY-----GE-----DTIE----DTMLGNRYIISAQSFYQVNTVMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D++DL PD + D G GTIGL+ A +V V G+E+ +AV DA +NA +N I N +V
Sbjct: 298 DFSDLTPDDTVIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
AE M S K + P
Sbjct: 358 ADSAEKAMASWSKRGIKP 375
>gi|418575679|ref|ZP_13139828.1| putative RNA methyltransferase [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
gi|379325877|gb|EHY93006.1| putative RNA methyltransferase [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
Length = 458
Score = 102 bits (254), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 87/356 (24%), Positives = 147/356 (41%), Gaps = 72/356 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L HM+Y QL KK + + + R+ G + +G
Sbjct: 90 LQHMTYQAQLNMKKEQVVNLFQ-----------------------RKAGFKDTIIHDTIG 126
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
YRNK + VG + + K GF +R+ + + +C ++ + + +
Sbjct: 127 MENPWYYRNKSQIPVGKNNENKVITGF----YRQRSHDIIDMDECLIQDQLHQEVINKLK 182
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
+ + ++ V+N K G R + +R G E+M+I +
Sbjct: 183 AWFNELNISVYNERKKQGMMRHVVIRTGHHS------------------RELMVIFVTNG 224
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
F + +E RL + F A + + D SNV L
Sbjct: 225 KKFKQGDILTE--RLKQHFPAIVSIKQN--------VNDTH--SNVIMGQNSYTLY---- 268
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
G+ E I D++S++ F I+ +F+Q+N++ EKLY D+A+L + +
Sbjct: 269 --GKDE---------IVDTLSDVTFKINDQSFYQINSIQTEKLYQRAIDYAELQGEETVL 317
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
D CG GTIGL +A + V G+E+ A++DA +NA IN +N FVC KAE+V+
Sbjct: 318 DTYCGIGTIGLYMAPKAKHVYGVEVVPEAITDAQQNATINQFENTTFVCGKAEEVI 373
>gi|225388648|ref|ZP_03758372.1| hypothetical protein CLOSTASPAR_02384 [Clostridium asparagiforme
DSM 15981]
gi|225045246|gb|EEG55492.1| hypothetical protein CLOSTASPAR_02384 [Clostridium asparagiforme
DSM 15981]
Length = 467
Score = 102 bits (254), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 85/307 (27%), Positives = 128/307 (41%), Gaps = 44/307 (14%)
Query: 360 KLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFM--LGNFREGVTAVEEPVDCPNVSEI 417
+ +GI GSP+ +GYRNK EFS G + P M G+F + VT P C V
Sbjct: 113 EFQGIKGSPISDGYRNKMEFSFGDEFKGGPLALGMHKRGSFYDIVTT---P-GCRIVHGD 168
Query: 418 ACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISE 477
CK + + + + + G+ R L VR G+ L V++
Sbjct: 169 FCKILESTRAYFAELGTAFLGKLSHKGYLRHLLVRRAVKTGEIL-----------VDLVT 217
Query: 478 VMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADA 537
+ + +D V+ ERL G A
Sbjct: 218 TTQTEYLGTDMQEDQVLGGWKERLLGLELEGRFA-------------------------G 252
Query: 538 PLRLLSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGD 595
L L+ AD + DV+ + ++ + LRF ISP +FFQ N+L AE LY +
Sbjct: 253 ILHTLNDSLADVVQSDRTDVLYGQDYFYEELLGLRFRISPFSFFQTNSLGAEVLYDMARS 312
Query: 596 WADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVC 655
+ D ++FD+ GTGTI LA V+G+E+ AV A NA++NG++NC F+
Sbjct: 313 YVGETKDKVVFDLYSGTGTIAQILAPVAKKVVGVEIVEEAVEAARMNAKLNGLENCEFLA 372
Query: 656 AKAEDVM 662
V+
Sbjct: 373 GDVLKVI 379
>gi|449911011|ref|ZP_21794966.1| putative RNA methyltransferase [Streptococcus mutans OMZ175]
gi|449258825|gb|EMC56384.1| putative RNA methyltransferase [Streptococcus mutans OMZ175]
Length = 451
Score = 102 bits (254), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 153/378 (40%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L V R + L H++Y QL K+ + L K+ G+S
Sbjct: 71 LTVDYLRTGIADLGHLTYGQQLNFKRKQVINSLSKIA---------GIS----------- 110
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
++ LG YRNK + V + + GF FR+ A+ D
Sbjct: 111 ---DIEVADTLGMDNPTAYRNKAQVPVR-RVNGQLETGF----FRKNSHALMPIEDYYIQ 162
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+ + + ++ L++ DL ++ + +G R L VR G G+ +
Sbjct: 163 DKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYTGQIM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++ S F + E++ F P +IQ+ + A
Sbjct: 210 ----LVLVTTRSKIFR---IEQMVEKIVSEF-----------PAVKSIIQNINDRNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
+ R L GE D +E D++ R+ IS +F+QVNT+ AEKLY
Sbjct: 252 FGSEFRTLY-----GE-----DTIE----DTMLGNRYIISAQSFYQVNTVMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D++DL PD + D G GTIGL+ A +V V G+E+ +AV DA +NA +N I N +V
Sbjct: 298 DFSDLAPDDTVIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
AE M S K + P
Sbjct: 358 ADSAEKAMASWSKRGIKP 375
>gi|309804713|ref|ZP_07698778.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
LactinV 09V1-c]
gi|309808903|ref|ZP_07702784.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
LactinV 01V1-a]
gi|325911406|ref|ZP_08173818.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
UPII 143-D]
gi|308166105|gb|EFO68323.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
LactinV 09V1-c]
gi|308167901|gb|EFO70038.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
LactinV 01V1-a]
gi|325476756|gb|EGC79910.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
UPII 143-D]
Length = 449
Score = 102 bits (254), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 97/360 (26%), Positives = 150/360 (41%), Gaps = 78/360 (21%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ LAHM Y QLE KK + +L+K+ N K+
Sbjct: 79 LAALAHMKYERQLEFKKQQVVNLLEKVHLNK-------------------------KVND 113
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
L SP YRNK + V + + VGF FR+ + D +
Sbjct: 114 CLASPESTAYRNKAQVPVRM-VNGQLEVGF----FRKHSHDLVPMTDFLTTDKKIDAAVV 168
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
++ L++ ++P ++ K++G R L +R ++ G+ + ++L+
Sbjct: 169 AVRDILRKFNVPAYDEIKHNGEVRYLEIRRSKANGQLM----------------IVLVCL 212
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQ-GVSNVAPADAPLRLL 542
S DAVV + SL A VI +H +NV +
Sbjct: 213 HKSFKNLDAVVQA----------------IQSLDNVACVILNHNPHKTNVILGEKEY--- 253
Query: 543 SIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPD 602
I +GE I D I +L F IS +FFQ+N+L +LY+L A L D
Sbjct: 254 -ILAGNGE-----------IVDKIGDLSFKISSQSFFQINSLQTPRLYNLAIQKAQLTSD 301
Query: 603 TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
++ D G GTIGL++A V V+G+E+ AV DA +NA +NGI N + KAE++M
Sbjct: 302 DVVIDAYSGIGTIGLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGINNAEYFEGKAEELM 361
>gi|117620248|ref|YP_858149.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
gi|117561655|gb|ABK38603.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
Length = 450
Score = 102 bits (254), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 88/304 (28%), Positives = 135/304 (44%), Gaps = 56/304 (18%)
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
ILG YRNK +++V A +GF + + +TA DC + + +
Sbjct: 115 ILGMDSPFAYRNKAQYAV-RGCDAGAEIGFYRKHSHDLITAD----DCAVQDSLHVELNA 169
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
+ ++++ D+ ++ ++G R L R+G G E+ + V + E +
Sbjct: 170 RVRNWMREHDIAAYDEVNHTGCVRNLMTRKGFKSG--------ELMVVLVTLGEEL---- 217
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLS 543
F A AS LP+T LV ++ +N R+L
Sbjct: 218 --------------------PFEAELLASLSELPVTTLVQNINEERTN--------RILG 249
Query: 544 IPKADGEPEESNDVV--EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGP 601
+N V+ E I D I L F ISP +FFQ N + LYS ++A+L
Sbjct: 250 ---------ATNRVLLGEGVIRDKIHELEFEISPLSFFQNNPSQTDVLYSSALEYAELTG 300
Query: 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661
+ +FD+ CG GTI L LA + V+GIE SA+SDA RNA +NGI++ F KAE +
Sbjct: 301 NETVFDIYCGIGTISLFLAGKAAKVVGIESVESAISDARRNAALNGIEHTEFHVGKAEQL 360
Query: 662 MGSL 665
M L
Sbjct: 361 MPEL 364
>gi|450071561|ref|ZP_21848179.1| putative RNA methyltransferase [Streptococcus mutans M2A]
gi|449212221|gb|EMC12595.1| putative RNA methyltransferase [Streptococcus mutans M2A]
Length = 451
Score = 102 bits (254), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 153/378 (40%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L V R + L H++Y QL K+ + L K+ G+S
Sbjct: 71 LTVDYLRTGIADLGHLTYGQQLNFKRKQVINSLSKIA---------GIS----------- 110
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
++ LG YRNK + V + + GF FR+ A+ D
Sbjct: 111 ---DIEVADTLGMDNPTAYRNKAQVPVR-RVNGQLETGF----FRKNSHALMPIEDYYIQ 162
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+ + + ++ L++ DL ++ + +G R L VR G G+ +
Sbjct: 163 DKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYTGQIM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++ S F + E++ F P +IQ+ + A
Sbjct: 210 ----LILVTTRSKIFR---IEQMIEKIISEF-----------PAVKSIIQNINDRNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
+ R L GE D +E D++ R+ IS +F+QVNT+ AEKLY
Sbjct: 252 FGSEFRTLY-----GE-----DTIE----DTMLGNRYIISAQSFYQVNTVMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D++DL PD + D G GTIGL+ A +V V G+E+ +AV DA +NA +N I N +V
Sbjct: 298 DFSDLTPDDTVIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
AE M S K + P
Sbjct: 358 ADSAEKAMASWSKRGIKP 375
>gi|422878542|ref|ZP_16925008.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK1059]
gi|422928392|ref|ZP_16961334.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
ATCC 29667]
gi|422931368|ref|ZP_16964299.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK340]
gi|332366968|gb|EGJ44708.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK1059]
gi|339616716|gb|EGQ21357.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
ATCC 29667]
gi|339619668|gb|EGQ24243.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK340]
Length = 469
Score = 102 bits (254), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 103/412 (25%), Positives = 167/412 (40%), Gaps = 77/412 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDGS----GLKVKSARDVVTPLAHMSYSVQL 316
E+A+ GEL + G G E L + R + L H++Y QL
Sbjct: 46 ENALSGELIRMRVLKVNKKIGFGKVEEFLRTSDQRNENLDMAYLRTGIADLGHLNYPAQL 105
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K+ + L K+ + P + + + PL GYRNK
Sbjct: 106 DFKRKQVKDSLYKIAGLSDVEVPPTLGMEQ---------------------PL--GYRNK 142
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + + + + P + ++ ++ L++ DL
Sbjct: 143 AQVPVR-RVNGQLETGFFRKNSHDLLPIEDFYIQDPIIDQVIL----FTRDLLRRFDLKP 197
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
++ + +G R L VR G G E+M+I + V
Sbjct: 198 YDEQEKTGLIRNLVVRRGHYSG------------------EIMVILVTTRPKI--FRVEQ 237
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESND 556
+RL +AF P ++Q+ N P +A I D D
Sbjct: 238 LMDRLTEAF-----------PAIKSIMQN----INDQPGNA------IFGKDWRTLYGQD 276
Query: 557 VVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIG 616
+ R+ + F IS AF+QVNT AEKLY D+++L D ++ D G GTIG
Sbjct: 277 YITDRMLGN----DFQISGPAFYQVNTEMAEKLYQTAIDFSELTSDDVVLDAYSGIGTIG 332
Query: 617 LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
L++A +V V G+E+ AV ++ +NA INGI N +VCA AE+ + + LK+
Sbjct: 333 LSVAKQVKQVYGVEVIPEAVENSRKNAAINGITNASYVCAPAEEAIQNWLKE 384
>gi|449888256|ref|ZP_21787218.1| putative RNA methyltransferase [Streptococcus mutans SA41]
gi|449251500|gb|EMC49511.1| putative RNA methyltransferase [Streptococcus mutans SA41]
Length = 456
Score = 102 bits (254), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 95/379 (25%), Positives = 154/379 (40%), Gaps = 75/379 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L V R + L H++Y QL K+ + L K+ G+S
Sbjct: 71 LTVDYLRTGIADLGHLTYGQQLNFKRKQVINSLSKIA---------GIS----------- 110
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
++ LG YRNK + V + + GF N + + P++ +
Sbjct: 111 ---DIEVADTLGMDNPTAYRNKAQVPVR-RVNGQLETGFFRKNSHDLM-----PIEDYYI 161
Query: 415 SEIAC-KYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEV 473
+ + + ++ L++ DL ++ + +G R L VR G G+ +
Sbjct: 162 QDKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYTGQIM------------ 209
Query: 474 NISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVA 533
+++ S F + E++ F P +IQ+ + A
Sbjct: 210 -----LVLVTTRSKIFR---IEQMIEKIVSEF-----------PAVKSIIQNINDRNTNA 250
Query: 534 PADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLG 593
+ R L GE D +E D++ R+ IS +F+QVNT+ AEKLY
Sbjct: 251 IFGSEFRTLY-----GE-----DTIE----DTMLGNRYIISAQSFYQVNTVMAEKLYQTA 296
Query: 594 GDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRF 653
D++DL PD + D G GTIGL+ A +V V G+E+ +AV DA +NA +N I N +
Sbjct: 297 IDFSDLAPDDTVIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHY 356
Query: 654 VCAKAEDVMGSLLKDYLNP 672
V AE M S K + P
Sbjct: 357 VADSAEKAMASWSKRGIKP 375
>gi|401565317|ref|ZP_10806157.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sp.
FOBRC6]
gi|400187906|gb|EJO22096.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sp.
FOBRC6]
Length = 466
Score = 102 bits (254), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 103/368 (27%), Positives = 144/368 (39%), Gaps = 78/368 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL--EGI 364
L H+SY QL K+ AQ++ LT IG LP L E +
Sbjct: 97 LQHLSYEEQLHAKR---AQVVDALT---------------------HIGKLPQILVNETL 132
Query: 365 LGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASI 424
N YRNK +F +G ++G F +G + +C + A+
Sbjct: 133 RADDTWN-YRNKMQFPIGLHKGR-----LVVGCFAQGSHRIINTENCHIQRSANNELANT 186
Query: 425 FQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQV 484
E ++ +PV+N + G R + R GR E+M +
Sbjct: 187 VHEVAEKLHIPVYNEDTHKGILRHIVGRVGRR-------------------GELMAVIVT 227
Query: 485 SSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSI 544
++ A +F RL + LP V Q+ Q N LL
Sbjct: 228 ATKQLPRA---KDFVRLLRE----------RLPHLVSVHQNIQTYRNNVIMGRDTELLW- 273
Query: 545 PKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTL 604
G P I D++ L F ISP +FFQVNT AE+LY +ADL
Sbjct: 274 ----GRPT---------ILDTLGRLNFHISPRSFFQVNTRQAERLYEQALTYADLHGTET 320
Query: 605 LFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664
+ D CGTGTI L LA + V GIE+ A+ DA +NA N +KN F+ A VM +
Sbjct: 321 VIDAYCGTGTITLFLAQKARKVYGIEIVQPAILDARKNARDNHVKNAEFIVGDATAVMPA 380
Query: 665 LLKDYLNP 672
L K + P
Sbjct: 381 LYKQGIRP 388
>gi|395850672|ref|XP_003797901.1| PREDICTED: tRNA (uracil(54)-C(5))-methyltransferase homolog,
partial [Otolemur garnettii]
Length = 251
Score = 102 bits (254), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 81/149 (54%), Gaps = 15/149 (10%)
Query: 518 LTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTA 577
LT+L Q+ ++ + +P +LL GEP I + I L+ ISP A
Sbjct: 24 LTSLYFQE-STMTRCSHQQSPYQLLF-----GEPH---------IFEDILGLKIRISPEA 68
Query: 578 FFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVS 637
FFQ+NT AE LY + + + DT+L D+CCGTG IGL+LA V+GIE+ AV
Sbjct: 69 FFQINTAGAEMLYRTVRELSGVNSDTILLDICCGTGVIGLSLAQHTSHVLGIELVEQAVE 128
Query: 638 DAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
DA A+ NGI NC F +AE ++ LL
Sbjct: 129 DARWTADFNGITNCEFHTGRAERILPQLL 157
>gi|290580745|ref|YP_003485137.1| RNA methyltransferase [Streptococcus mutans NN2025]
gi|449969565|ref|ZP_21813305.1| putative RNA methyltransferase [Streptococcus mutans 2VS1]
gi|450059156|ref|ZP_21843362.1| putative RNA methyltransferase [Streptococcus mutans NLML4]
gi|450093191|ref|ZP_21856474.1| putative RNA methyltransferase [Streptococcus mutans W6]
gi|450147749|ref|ZP_21875247.1| putative RNA methyltransferase [Streptococcus mutans 14D]
gi|450164465|ref|ZP_21881386.1| putative RNA methyltransferase [Streptococcus mutans B]
gi|254997644|dbj|BAH88245.1| putative RNA methyltransferase [Streptococcus mutans NN2025]
gi|449174084|gb|EMB76600.1| putative RNA methyltransferase [Streptococcus mutans 2VS1]
gi|449203223|gb|EMC04095.1| putative RNA methyltransferase [Streptococcus mutans NLML4]
gi|449217410|gb|EMC17465.1| putative RNA methyltransferase [Streptococcus mutans W6]
gi|449236609|gb|EMC35519.1| putative RNA methyltransferase [Streptococcus mutans 14D]
gi|449241940|gb|EMC40550.1| putative RNA methyltransferase [Streptococcus mutans B]
Length = 454
Score = 102 bits (254), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 152/378 (40%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L V R + L H++Y QL K+ + L K+ G+S
Sbjct: 71 LTVDYLRTGIADLGHLTYGQQLNFKRKQVINSLSKIA---------GIS----------- 110
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
+ LG YRNK + V + + GF FR+ A+ D
Sbjct: 111 ---DIDVADTLGMDNPTAYRNKAQVPVR-RVNGQLETGF----FRKNSHALMPIEDYYIQ 162
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+ + + ++ L++ DL ++ + +G R L VR G G+ +
Sbjct: 163 DKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYTGQIM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++ S F + E++ F P +IQ+ + A
Sbjct: 210 ----LVLVTTRSKIFR---IEQMIEKIVSEF-----------PAVKSIIQNINDRNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
+ R L GE D +E D++ R+ IS +F+QVNT+ AEKLY
Sbjct: 252 FGSEFRTLY-----GE-----DTIE----DTMLGNRYIISAQSFYQVNTVMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D++DL PD + D G GTIGL+ A +V V G+E+ +AV DA +NA +N I N +V
Sbjct: 298 DFSDLTPDDTVIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
AE M S K + P
Sbjct: 358 ADSAEKAMASWSKRGIKP 375
>gi|450034933|ref|ZP_21834721.1| putative RNA methyltransferase [Streptococcus mutans M21]
gi|450109389|ref|ZP_21861411.1| putative RNA methyltransferase [Streptococcus mutans SM6]
gi|449196049|gb|EMB97347.1| putative RNA methyltransferase [Streptococcus mutans M21]
gi|449226279|gb|EMC25829.1| putative RNA methyltransferase [Streptococcus mutans SM6]
Length = 451
Score = 102 bits (254), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 153/378 (40%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L V R + L H++Y QL K+ + L K+ G+S
Sbjct: 71 LTVDYLRTGIADLGHLTYGQQLNFKRKQVINSLSKIA---------GIS----------- 110
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
++ LG YRNK + V + + GF FR+ A+ D
Sbjct: 111 ---DIEVADTLGMDNPTAYRNKAQVPVR-RVNGQLETGF----FRKNSHALMPIEDYYIQ 162
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+ + + ++ L++ DL ++ + +G R L VR G G+ +
Sbjct: 163 DKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYTGQIM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++ S F + E++ F P +IQ+ + A
Sbjct: 210 ----LVLVTTRSKIFR---IEQMIEKIVSEF-----------PAVKSIIQNINDRNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
+ R L GE D +E D++ R+ IS +F+QVNT+ AEKLY
Sbjct: 252 FGSEFRTLY-----GE-----DTIE----DTMLGNRYIISAQSFYQVNTVMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D++DL PD + D G GTIGL+ A +V V G+E+ +AV DA +NA +N I N +V
Sbjct: 298 DFSDLTPDDTVIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
AE M S K + P
Sbjct: 358 ADSAEKAMASWSKRGIKP 375
>gi|220930233|ref|YP_002507142.1| TrmA family RNA methyltransferase [Clostridium cellulolyticum H10]
gi|220000561|gb|ACL77162.1| RNA methyltransferase, TrmA family [Clostridium cellulolyticum H10]
Length = 460
Score = 102 bits (253), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 87/363 (23%), Positives = 154/363 (42%), Gaps = 87/363 (23%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLP-CKLEGIL 365
+ HM+Y QL+ KK+++ Q + R IGG+ + +
Sbjct: 90 VQHMTYQAQLDFKKDTVLQNI------------------------RRIGGIQDVVVNDTI 125
Query: 366 GSPLVNGYRNKCEFSVGYSLQAKPTVGFMLG---NFREGVTAVEEPVDCPNVSEIACKYA 422
G YRNK ++ VG+ + T+GF N +G +P + + +I
Sbjct: 126 GMENPYKYRNKVQYPVGWD-NGEITIGFYETRSHNIIDGSLCDIQPDESNKIRDIV---- 180
Query: 423 SIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIA 482
+ F + + + +++ G R + VR+G +E+M++
Sbjct: 181 ---RSFCKDAGIAIYDEKTGKGLLRHVMVRKG------------------FRTNEIMVVL 219
Query: 483 QVSSATF---DDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL 539
++ DD V ++L + F + ++++ + +N+ + +
Sbjct: 220 VINGDKLLKSDDLV-----KKLLEEFP----------DIKSIILNVNTKNTNIILGNKNI 264
Query: 540 RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
+ + I D I + +F ISP +FFQVN + E LY ++A L
Sbjct: 265 CIYG---------------QMYITDFIGSFKFEISPLSFFQVNPIQTEVLYEKALEYAGL 309
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659
+ +FD+ CG GTI L L+ R VIG+E+ A+SDA RNAE+NGI N F+ +AE
Sbjct: 310 SGNETVFDLYCGIGTISLYLSQRAKRVIGVEVVPDAISDARRNAELNGITNVEFLVGEAE 369
Query: 660 DVM 662
V+
Sbjct: 370 KVI 372
>gi|433449204|ref|ZP_20412068.1| tRNA (uracil-5-)-methyltransferase-like protein [Weissella ceti
NC36]
gi|429538718|gb|ELA06756.1| tRNA (uracil-5-)-methyltransferase-like protein [Weissella ceti
NC36]
Length = 455
Score = 102 bits (253), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 92/365 (25%), Positives = 147/365 (40%), Gaps = 87/365 (23%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ PLAH++Y QL+HK+ +A + K + A G+ P W
Sbjct: 85 IAPLAHLNYDAQLKHKQKQVADVFNKQHVDVEIAPTMGMDNP-W---------------- 127
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDC----PNVSEIAC 419
GYRNK + + T GF +R G + E D P + E
Sbjct: 128 --------GYRNKAQIPTR-EINGLLTTGF----YRRGSHRLVEIEDFLIQDPKIDEAIL 174
Query: 420 KYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVM 479
+ ++ L++ +N + G R + VR G S M
Sbjct: 175 ----VVRDILRKYHTEAYNEEIHKGTIRNIMVRRGYY-------------------SHEM 211
Query: 480 LIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL 539
++ V+ S LPL +++QD + + + +
Sbjct: 212 MVVLVTR--------------------------SKKLPLAEVIVQDIRAA--LPEVKSIV 243
Query: 540 RLLSIPKADGEPEESNDVV--EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWA 597
+ ++ K + E N+++ ++ I D + F I P +F+QVN E+LY + A
Sbjct: 244 QNVNQEKTNVIMGEKNNILWGKSTIKDQLLGKTFAIGPNSFYQVNPQMTERLYEMAAQKA 303
Query: 598 DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAK 657
+L + D G GTI L +A +V VIG+E+ A AV DA RNA+IN IKN +F K
Sbjct: 304 ELKSTDTVIDAYSGIGTISLAIADQVKQVIGVEIVAGAVDDAKRNADINNIKNVKFELGK 363
Query: 658 AEDVM 662
AE+ M
Sbjct: 364 AEEKM 368
>gi|307244221|ref|ZP_07526336.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
stomatis DSM 17678]
gi|306492371|gb|EFM64409.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
stomatis DSM 17678]
Length = 544
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/318 (25%), Positives = 143/318 (44%), Gaps = 51/318 (16%)
Query: 352 REIGGLP-CKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVD 410
+ IGGL ++ +G YRNK +F V K +GF +R+ + +
Sbjct: 105 KRIGGLENVQVFDTIGMEKPFRYRNKAQFPVQME-DGKLKIGF----YRKKSHDIIDIDK 159
Query: 411 CPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNI 470
C E I ++++++ ++ +++ + G R + + G + G
Sbjct: 160 CLIQDEKNDLIIDIIRKYIEEENISIYDEKSHKGLLRHIVTKVGFTSG------------ 207
Query: 471 SEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVS 530
+VM++ + F + +RL ++ T+LV+ ++ +
Sbjct: 208 ------QVMVVLVATEDRFKN------LDRLIESLKDQVEG------FTSLVVNINKDKT 249
Query: 531 NVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLY 590
NV L L +I K +I D+I +L+F ISP +FFQVN + + LY
Sbjct: 250 NVI-----LGLKNINKYGN----------GKIVDNIGDLKFEISPLSFFQVNPIQTDVLY 294
Query: 591 SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKN 650
+ ++ADL +FD+ CG GTI L LA + V G+E+ A+ DA NA++NG+ N
Sbjct: 295 NKALEYADLKEGDRVFDIYCGIGTISLFLAQKAEFVYGVEIVEDAIKDARLNAKLNGMDN 354
Query: 651 CRFVCAKAEDVMGSLLKD 668
F KAE+V+ + K+
Sbjct: 355 LEFFVGKAEEVVPEIYKE 372
>gi|309809377|ref|ZP_07703239.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
SPIN 2503V10-D]
gi|308170288|gb|EFO72319.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
SPIN 2503V10-D]
Length = 449
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 97/360 (26%), Positives = 150/360 (41%), Gaps = 78/360 (21%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ LAHM Y QLE KK + +L+K+ N K+
Sbjct: 79 LAALAHMKYERQLEFKKQQVVNLLEKVHLNK-------------------------KVND 113
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
L SP YRNK + V + + VGF FR+ + D +
Sbjct: 114 CLASPESTAYRNKAQVPVR-MVNGQLEVGF----FRKHSHDLVPMTDFLTTDKKIDAAVV 168
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
++ L++ ++P ++ K++G R L +R ++ G+ + ++L+
Sbjct: 169 AVRDILRKFNVPAYDEIKHNGEVRYLEIRRSKANGQLM----------------IVLVCL 212
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQ-GVSNVAPADAPLRLL 542
S DAVV + SL A VI +H +NV +
Sbjct: 213 HKSFKNLDAVVQA----------------IQSLDNVACVILNHNPHKTNVILGEKEY--- 253
Query: 543 SIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPD 602
I +GE I D I +L F IS +FFQ+N+L +LY+L A L D
Sbjct: 254 -ILAGNGE-----------IVDKIGDLSFKISSQSFFQINSLQTPRLYNLAIQKAQLTSD 301
Query: 603 TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
++ D G GTIGL++A V V+G+E+ AV DA +NA +NGI N + KAE++M
Sbjct: 302 DVVIDAYSGIGTIGLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGINNAEYFEGKAEELM 361
>gi|284042250|ref|YP_003392590.1| RNA methyltransferase, TrmA family [Conexibacter woesei DSM 14684]
gi|283946471|gb|ADB49215.1| RNA methyltransferase, TrmA family [Conexibacter woesei DSM 14684]
Length = 456
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 94/369 (25%), Positives = 145/369 (39%), Gaps = 90/369 (24%)
Query: 306 PLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGIL 365
P + Y QLE K + L+++ + +GG +LE I+
Sbjct: 88 PWQILPYERQLEIKSKQVDDALRRIGK---------------------LGGF--ELEPIV 124
Query: 366 GSPLVNGYRNKCEFSVGYSLQAKP---TVGFMLGNFREGVTAVEEPVDCPNVSEIACKYA 422
+ YRNK E+S G A+ GF + + + DC SE
Sbjct: 125 PALETWRYRNKLEYSFGTEGTAERGELIFGFHAPGEWDRIVPI---ADCMLASERGNAVR 181
Query: 423 SIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIA 482
F ++ L ++R GF R +REGR G + + V +
Sbjct: 182 DQVLAFCREQGLTAYDRRTRRGFLRNCVIREGRRTG-------------QFQVRLVTMPG 228
Query: 483 QVSSATFDDAV-----VNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADA 537
++ F +AV + ++F+ L + A G
Sbjct: 229 ELDREAFAEAVDCDGLLWTQFDGLGETTAEG----------------------------- 259
Query: 538 PLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWA 597
D E +D +E + ++ + F +SP AFFQVNT AEKLY+L GD+A
Sbjct: 260 ----------DTELIAGSDYLE----EELNGMSFRVSPNAFFQVNTEMAEKLYALAGDYA 305
Query: 598 DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAK 657
L L+D+ CG GT+GLT+A R G + G+E+ A+ DA NA +N I N RF
Sbjct: 306 SLAGFERLYDLYCGIGTVGLTMAPRAGELWGLEIIEDAIGDAIANARLNEIDNARFFAGD 365
Query: 658 AEDVMGSLL 666
+ L+
Sbjct: 366 VRTALRLLV 374
>gi|450126922|ref|ZP_21868416.1| putative RNA methyltransferase [Streptococcus mutans U2A]
gi|449231166|gb|EMC30378.1| putative RNA methyltransferase [Streptococcus mutans U2A]
Length = 454
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 94/378 (24%), Positives = 152/378 (40%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L V R + L H++Y QL K+ + L K+ G+S
Sbjct: 71 LTVDYLRTGIADLGHLTYGQQLNFKRKQVINSLSKIA---------GIS----------- 110
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
+ LG YRNK + V + + GF N + + + + ++
Sbjct: 111 ---DIDVADTLGMDKPTAYRNKAQVPVR-RVNGQLETGFFRKNSHDLMPIEDYYIQDKDI 166
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+ + ++ L++ DL ++ + +G R L VR G G+ +
Sbjct: 167 DRLI----NFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYTGQIM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++ S F + E++ F P +IQ+ + A
Sbjct: 210 ----LVLVTTRSKIFR---IEQMIEKIVSEF-----------PAVKSIIQNINDRNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
+ R L GE D +E D++ R+ IS +F+QVNT+ AEKLY
Sbjct: 252 FGSEFRTLY-----GE-----DTIE----DTMLGNRYIISAQSFYQVNTVMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D++DL PD + D G GTIGL+ A +V V G+E+ +AV DA +NA +N I N +V
Sbjct: 298 DFSDLTPDDTVIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
AE M S K + P
Sbjct: 358 ADSAEKAMASWSKRGIKP 375
>gi|283796109|ref|ZP_06345262.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. M62/1]
gi|291076323|gb|EFE13687.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. M62/1]
Length = 560
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/309 (26%), Positives = 130/309 (42%), Gaps = 41/309 (13%)
Query: 361 LEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFM--LGNFREGVTAVEEPVDCPNVSEIA 418
EGI+GSP YRNK EFS G ++ P M G+F + VT C V E
Sbjct: 117 FEGIIGSPAAERYRNKMEFSFGDEVKDGPLALGMHKRGSFYDVVTVG----GCRIVHEDF 172
Query: 419 CKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEV 478
K +EF ++ +P + + + +G+ R L VR G E+ I + ++
Sbjct: 173 TKILLCTKEFFEERQIPFYKKMQQTGYLRHLLVRRAVKTG--------EILIDLITTTQT 224
Query: 479 MLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAP 538
+ ++ ++N E++ G A L
Sbjct: 225 HTLQTEQFGGTEEELLNQWREKILSLSLEGTLAGILHTKNDTL----------------- 267
Query: 539 LRLLSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDW 596
AD +E +++ + ++ + L+F ISP +FFQ N+L AE LY ++
Sbjct: 268 --------ADAVKDEGTEILFGQDYFYEELLGLKFRISPFSFFQTNSLGAEVLYEKTREY 319
Query: 597 ADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCA 656
++FD+ GTGTI LA V+G+E+ AV + NAE NG+ NC F+
Sbjct: 320 VGGVDGKVVFDLYSGTGTIAQILAPVAQKVVGVEIVEEAVEASRVNAERNGLSNCEFIAG 379
Query: 657 KAEDVMGSL 665
V+G L
Sbjct: 380 DVLKVVGEL 388
>gi|168181545|ref|ZP_02616209.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum Bf]
gi|237796317|ref|YP_002863869.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
Ba4 str. 657]
gi|182674982|gb|EDT86943.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum Bf]
gi|229260413|gb|ACQ51446.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
Ba4 str. 657]
Length = 453
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 134/318 (42%), Gaps = 53/318 (16%)
Query: 348 IMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVG-YSLQAKPTVGFMLGNFREGVTAVE 406
+ KS+EI G G+ SP YRNK EF+ G T+G + N + V+
Sbjct: 101 LFKSKEIRGFD--FLGVEKSPEEYEYRNKMEFTFGDMEKGGDLTLGMHVKNRNFSIVTVD 158
Query: 407 EPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENL 466
+ C V + + + LP + + GF R L +R+ ++ G+ L
Sbjct: 159 K---CEIVDRDFRNILTTVVNYFNEKRLPKYRVMSHEGFLRNLVIRKAKNTGEIL----- 210
Query: 467 EVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDH 526
+NI S FD F+ + G + ++ +
Sbjct: 211 ------INI------VTTSQMEFD-------FKEIVDMLLKGECKGE----IKGILHTIN 247
Query: 527 QGVSNVAPADAPLRLLSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTL 584
+S+V D +++ R I + + L+F I+P AFFQ N+
Sbjct: 248 DTLSDVVQVDKL-----------------EILYGRDYIIEELLGLKFKIAPEAFFQTNSK 290
Query: 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAE 644
AEKLYS+ D+ ++FD+ CGTGTIG +A + VIG+E+ AV A+ NA+
Sbjct: 291 GAEKLYSIVKDFLGDASSKVVFDLYCGTGTIGQIVASKAKKVIGVELIEEAVKAANENAK 350
Query: 645 INGIKNCRFVCAKAEDVM 662
+NG+ NC F+ V+
Sbjct: 351 LNGLNNCEFIAGDVAKVI 368
>gi|239628824|ref|ZP_04671855.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239518970|gb|EEQ58836.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 475
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 91/356 (25%), Positives = 150/356 (42%), Gaps = 49/356 (13%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L MSY QL K+N + L ++ + K EI LP I+G
Sbjct: 82 LQAMSYEEQLRFKENKVLNNLMRIGK----------------FKRDEIKMLP-----IMG 120
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
YRNK +F G + + GF G + + DC E + I +
Sbjct: 121 MENPWRYRNKAQFPFGRNKDGEIIAGFYAGRTHDIIGND----DCLLGVEENQEILGIIK 176
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
F++++ L ++ + G R + +R+G G E+M+ V+
Sbjct: 177 GFMKENGLEPYDENAHKGLVRHVLIRKGFKTG------------------ELMVCLVVNG 218
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
T + E + A + A + + L +++ V + + +
Sbjct: 219 RT-----LGGRLEDGLRDSRADSLADNSADRLAGCLVEKLCQVKGMTSISYSVNMEKTNV 273
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
G+ E N I D I ++++ ISP +F+QVN + EKLY ++ADL + ++
Sbjct: 274 IMGK-EVVNLYGPGYITDYIGDVQYQISPLSFYQVNPVQTEKLYGTALEYADLSGNETVW 332
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
D+ CG GTI L LA + V G+E+ A+ DA RNA +NG+ N F KAE+V+
Sbjct: 333 DLYCGIGTISLFLAQKAKKVYGVEIIPQAIEDARRNAALNGMDNVEFFVGKAEEVL 388
>gi|429728481|ref|ZP_19263202.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
anaerobius VPI 4330]
gi|429149594|gb|EKX92571.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
anaerobius VPI 4330]
Length = 452
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 90/306 (29%), Positives = 138/306 (45%), Gaps = 50/306 (16%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKPTVGFM--LGNFREGVTAVEEPVDCPNVSEIACK 420
GI SP YRNK E++ G + P M +G F + VT DC V +
Sbjct: 114 GINPSPSSVAYRNKMEYTFGDEYKDGPLSLGMHKVGRFIDIVTVD----DCRIVDQDFKT 169
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
+ ++F ++ LP + F + G+ R L VR+G + G+ L VNI
Sbjct: 170 IMTRTRDFFEEKGLPYYRSFNHQGYLRHLVVRKGENTGE------LMVNI---------- 213
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
V+S+ D + E+ K F G S L ++ + G+++ D +R
Sbjct: 214 ---VTSSQLDYNM--DEY----KDFLLGLDLDSE---LVGVLHTINDGLADAVQCD-EMR 260
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWA-DL 599
+L D ++ + LRF +SP +FFQ NT AE LY++ +A D
Sbjct: 261 ILY----------GRDY----FYEEVLGLRFKVSPFSFFQTNTKGAEALYTIARKFAGDR 306
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659
G ++FD+ GTGTIG +A V GIE+ AV A++NA +N + NC F+
Sbjct: 307 GHGKVVFDLYSGTGTIGQLMAKTAKKVYGIELVEEAVVAANQNAVLNNLDNCEFIAGDVA 366
Query: 660 DVMGSL 665
V+ SL
Sbjct: 367 KVVSSL 372
>gi|160879502|ref|YP_001558470.1| RNA methyltransferase [Clostridium phytofermentans ISDg]
gi|160428168|gb|ABX41731.1| RNA methyltransferase, TrmA family [Clostridium phytofermentans
ISDg]
Length = 463
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 134/309 (43%), Gaps = 44/309 (14%)
Query: 360 KLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREG-VTAVEEPVDCPNVSEIA 418
+ +GI GSPL GYRNK EFS G + P LG ++G + DC V E
Sbjct: 115 EFQGIEGSPLEFGYRNKMEFSFGDEFKDGP---LALGLHKKGSFYDIVTTSDCKLVHEDY 171
Query: 419 CKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEV 478
+ ++ +L +++ + G+ R L +R G E+ +S + S+
Sbjct: 172 NRILGCVLSLAKEYNLNYYHKMSHEGYLRHLLIRRAARTG--------EILVSLITTSQT 223
Query: 479 MLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAP 538
+ +VN E E L K S +L L ++
Sbjct: 224 ------------NVLVNGEEEFLNKL-----RESLKNLSLEGSIV-------------GI 253
Query: 539 LRLLSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDW 596
L ++ AD + D+++ + I + + L+F IS +FFQ N+L AE LY+ D+
Sbjct: 254 LHTVNDSLADVVQSDRTDILDGQDFIFEEVLGLKFKISTFSFFQTNSLGAEVLYNCVRDF 313
Query: 597 ADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCA 656
D L+FD+ GTGTI LA VIG+E+ AV A NA +N + NC F+
Sbjct: 314 VGETKDKLIFDLYSGTGTIAQLLAPVAKKVIGVEIVGEAVVAARENASLNKLTNCEFIAG 373
Query: 657 KAEDVMGSL 665
V+ ++
Sbjct: 374 DVLKVIDTI 382
>gi|24379246|ref|NP_721201.1| RNA methyltransferase [Streptococcus mutans UA159]
gi|449863153|ref|ZP_21778084.1| putative RNA methyltransferase [Streptococcus mutans U2B]
gi|449872208|ref|ZP_21781416.1| putative RNA methyltransferase [Streptococcus mutans 8ID3]
gi|449984603|ref|ZP_21819149.1| putative RNA methyltransferase [Streptococcus mutans NFSM2]
gi|50401575|sp|Q8DUV4.1|Y788_STRMU RecName: Full=Uncharacterized RNA methyltransferase SMU_788
gi|24377161|gb|AAN58507.1|AE014920_5 putative RNA methyltransferase [Streptococcus mutans UA159]
gi|449154673|gb|EMB58238.1| putative RNA methyltransferase [Streptococcus mutans 8ID3]
gi|449180021|gb|EMB82203.1| putative RNA methyltransferase [Streptococcus mutans NFSM2]
gi|449265136|gb|EMC62463.1| putative RNA methyltransferase [Streptococcus mutans U2B]
Length = 451
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 153/378 (40%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L V R + L H++Y QL K+ + L K+ G+S
Sbjct: 71 LTVDYLRTGIADLGHLTYGQQLNFKRKQVINSLSKIA---------GIS----------- 110
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
++ LG YRNK + V + + GF FR+ A+ D
Sbjct: 111 ---DIEVADTLGMDNPTAYRNKAQVPVR-RVNGQLETGF----FRKNSHALMPIEDYYIQ 162
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+ + + ++ L++ DL ++ + +G R L VR G G+ +
Sbjct: 163 DKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYTGQIM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++ S F + E++ F P +IQ+ + A
Sbjct: 210 ----LVLVTTRSKIFR---IEQMIEKIISEF-----------PAVKSIIQNINDRNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
+ R L GE D +E D++ R+ IS +F+QVNT+ AEKLY
Sbjct: 252 FGSEFRTLY-----GE-----DTIE----DTMLGNRYIISAQSFYQVNTVMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D++DL PD + D G GTIGL+ A +V V G+E+ +AV DA +NA +N I N +V
Sbjct: 298 DFSDLTPDDTVIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
AE M S K + P
Sbjct: 358 ADSAEKAMASWSKRGIKP 375
>gi|330828283|ref|YP_004391235.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Aeromonas veronii
B565]
gi|423211028|ref|ZP_17197581.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aeromonas veronii
AER397]
gi|328803419|gb|AEB48618.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Aeromonas veronii
B565]
gi|404614030|gb|EKB11034.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aeromonas veronii
AER397]
Length = 450
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 148/333 (44%), Gaps = 58/333 (17%)
Query: 337 ACPNGVSLPEWIMKS--REIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFM 394
A P + L + +++S ++G ++ ILG YRNK +++V A +GF
Sbjct: 86 AYPAQLKLKQALVQSALEQVGLGDTPVKDILGMESPFAYRNKAQYAV-RGCDAGAEIGFY 144
Query: 395 LGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREG 454
+ + +TA DC + + + + ++++ ++ ++ +SG R L R+G
Sbjct: 145 RKHSHDLITAD----DCAVQDPLHVELNARVRNWMREHNIAAYDEVNHSGCVRNLMTRKG 200
Query: 455 RSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSP 514
G E+ + V + E A F A A+
Sbjct: 201 FKSG--------ELMVVLVTLGE------------------------ALPFEAELLAALS 228
Query: 515 SLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVV--EARIHDSISNLRFC 572
LP+T LV + +N R+L +N V+ E I D I L F
Sbjct: 229 DLPVTTLVQNINDERTN--------RILG---------ATNRVLLGEGVIRDKIHELEFE 271
Query: 573 ISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMN 632
ISP +FFQ N + LYS ++A+L + +FD+ CG GTI L LA + V+GIE
Sbjct: 272 ISPLSFFQNNPTQTDVLYSSALEYAELTGNETVFDIYCGIGTISLFLAGKAAKVVGIESV 331
Query: 633 ASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
SA+SDA RNA +NGI++ F KAE +M L
Sbjct: 332 ESAISDARRNAALNGIEHTEFHVGKAEQLMPEL 364
>gi|387927857|ref|ZP_10130536.1| RNA methyltransferase, TrmA family protein [Bacillus methanolicus
PB1]
gi|387590001|gb|EIJ82321.1| RNA methyltransferase, TrmA family protein [Bacillus methanolicus
PB1]
Length = 456
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 95/366 (25%), Positives = 146/366 (39%), Gaps = 81/366 (22%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLP-CKLEGIL 365
L H+SY QL++K+N + Q+L + IG L K+ I+
Sbjct: 88 LQHISYEGQLKYKENQVRQVLTR------------------------IGKLEDVKVHPII 123
Query: 366 GSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF 425
G YRNK + VG K GF E V E + P ++E+
Sbjct: 124 GMDNPWNYRNKAQVPVG-EKDGKLIAGFFKPRSHEIVDTNESLIQLPEINEVV----RTV 178
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
+E + +P +N + G R + R G+ G+ + V++I + +
Sbjct: 179 KEICIELGIPAYNEEAHKGVLRHIIARYGKQTGELM----------------VVIITRTA 222
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
+ +V RL K + V NV P + L
Sbjct: 223 DIPHKNKLVKEIIARLPKVKSI---------------------VHNVNPKRTNVIL---- 257
Query: 546 KADGEPEE---SNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPD 602
GE N+V I+D I N++F IS +F+QVN + LY ++A L +
Sbjct: 258 ---GEKTTVLWGNEV----IYDYIGNVKFAISALSFYQVNPDQTKVLYDKALEYAGLTGE 310
Query: 603 TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
+ D CG GTI L LA + V G+E+ A+ DA RNA++NGI N F +AE V+
Sbjct: 311 ETVIDAYCGIGTISLFLAQKAKKVFGVEVVPEAIEDAKRNAKLNGITNAEFAVGEAEIVI 370
Query: 663 GSLLKD 668
K+
Sbjct: 371 PKWYKE 376
>gi|384485771|gb|EIE77951.1| hypothetical protein RO3G_02655 [Rhizopus delemar RA 99-880]
Length = 275
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 93/186 (50%), Gaps = 20/186 (10%)
Query: 477 EVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPAD 536
++M++ Q+ + D + E ER+ + ++ T L++Q G SN
Sbjct: 9 DIMILIQLRTTELSDQQLTQEKERIINYW----NGLKQTINTTTLLLQTWDGDSNGITDK 64
Query: 537 APLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDW 596
+L + + +++ + RF IS +AFFQVNT A E LYS +W
Sbjct: 65 GHTEIL--------------IGDGYVYEKLLGCRFRISSSAFFQVNTPATELLYSKCAEW 110
Query: 597 ADLGPD--TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
++ + T L D+CCGTGTIG+T+A V VIGIEM A+ DA NA+IN I N +
Sbjct: 111 CNINKEKKTTLLDLCCGTGTIGITMAKSVDKVIGIEMIPEAIVDAKANAKINNITNAYYY 170
Query: 655 CAKAED 660
K ED
Sbjct: 171 ANKVED 176
>gi|422343785|ref|ZP_16424712.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas noxia
F0398]
gi|355378201|gb|EHG25392.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas noxia
F0398]
Length = 465
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 99/366 (27%), Positives = 147/366 (40%), Gaps = 74/366 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H+SY QL+ K+ +A+ L + + + +P K
Sbjct: 96 LQHLSYEAQLDAKRAQVAEALTHIGK---------------------LSQIPVKETMRAE 134
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
P YRNK +F +G + + K ++G F +G + + +C + +
Sbjct: 135 EPW--NYRNKMQFPIGIN-KGK----ILVGCFAQGSHNIIDTKNCHIQHTANNDLGNAMR 187
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
+ ++ +PV+N + G R + R GR+ L+A + +
Sbjct: 188 DIVEHLHIPVYNEDTHKGVMRHIIGRVGRNND---------------------LMAVIVT 226
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
AT +RL +A LP + Q+ Q N +LL
Sbjct: 227 AT----------KRLPRAKDV-VRMLRERLPNLVSIHQNIQTYHNNVIMGRDTQLLW--- 272
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
G P I DS+ L F ISP +FFQVNT AE+LY +ADL +
Sbjct: 273 --GRPT---------IIDSLGRLNFHISPRSFFQVNTRQAERLYEQTLAYADLHGTETVI 321
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
D CGTGTI L LA R V GIE+ A+ DA +NA N IKN F+ A VM +L
Sbjct: 322 DAYCGTGTITLFLAQRARKVYGIEIVQPAILDARKNARDNHIKNAEFIVGDATAVMPALY 381
Query: 667 KDYLNP 672
K + P
Sbjct: 382 KQGIRP 387
>gi|449891037|ref|ZP_21787689.1| putative RNA methyltransferase [Streptococcus mutans SF12]
gi|449256902|gb|EMC54713.1| putative RNA methyltransferase [Streptococcus mutans SF12]
Length = 451
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 153/378 (40%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L V R + L H++Y QL K+ + L K+ G+S
Sbjct: 71 LTVDYLRTGIADLGHLTYGQQLNFKRKQVINSLSKIA---------GIS----------- 110
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
++ LG YRNK + V + + GF FR+ A+ D
Sbjct: 111 ---DIEVADTLGMDNPTAYRNKAQVPVR-RVNGQLETGF----FRKNSHALMPIEDYYIQ 162
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+ + + ++ L++ DL ++ + +G R L VR G G+ +
Sbjct: 163 DKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYTGQIM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++ S F + E++ F P +IQ+ + A
Sbjct: 210 ----LVLVTTRSKIFR---IEQMVEKIVSEF-----------PAVKSIIQNINDRNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
+ R L GE D +E D++ R+ IS +F+QVNT+ AEKLY
Sbjct: 252 FGSEFRTLY-----GE-----DTIE----DTMLGNRYIISAQSFYQVNTVMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D++DL PD + D G GTIGL+ A +V V G+E+ +AV DA +NA +N I N +V
Sbjct: 298 DFSDLTPDDTVIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
AE M S K + P
Sbjct: 358 ADSAEKAMASWSKRGIKP 375
>gi|389576327|ref|ZP_10166355.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium
cellulosolvens 6]
gi|389311812|gb|EIM56745.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium
cellulosolvens 6]
Length = 560
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/308 (27%), Positives = 139/308 (45%), Gaps = 18/308 (5%)
Query: 361 LEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTA-VEEPVDCPNVSEIAC 419
EG+ GSP+ NGYRNK E+S G + P LG ++ T + DC V E
Sbjct: 161 FEGVKGSPVNNGYRNKMEYSFGDDQKDGP---LTLGLHKKASTYDILTADDCQIVHEDFN 217
Query: 420 KYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVM 479
+ +F + + P + + G+ R L VR G+ L V+ + + E+++SE
Sbjct: 218 RILRCVLDFCTEKNWPYLRKMTHVGYLRHLLVRRAVMTGEIL-VDLVTTSQYEMDLSEGN 276
Query: 480 LIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL 539
Q++ + + + R ++ A + LTA + Q + L
Sbjct: 277 PRKQLTG----EEMSRTREMRTEESLTA---EQGDLMELTARI----QALELEGEITGIL 325
Query: 540 RLLSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWA 597
++ AD + D++ R ++ + L+F I+P +FFQ N+ AE LY ++
Sbjct: 326 HTVNDSLADVVQNDHTDILAGRDYFYEELLGLKFKITPFSFFQTNSKGAEVLYRTAREFL 385
Query: 598 DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAK 657
+ +FD+ GTGTI LA V+G+E+ AV A NA +NG+ NCRF+
Sbjct: 386 GDIDNQTVFDLYSGTGTIAQMLAPVAKNVVGVEIVEEAVEAAKENAALNGLDNCRFIAGD 445
Query: 658 AEDVMGSL 665
V+ L
Sbjct: 446 VLKVLDEL 453
>gi|292670870|ref|ZP_06604296.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas noxia ATCC
43541]
gi|292647491|gb|EFF65463.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas noxia ATCC
43541]
Length = 465
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 98/368 (26%), Positives = 148/368 (40%), Gaps = 78/368 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H+SY QL+ K+ +A+ L + + + +P K
Sbjct: 96 LQHLSYEAQLDAKRAQVAEALTHIGK---------------------LSQIPVKETMRAE 134
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
P YRNK +F +G + + K ++G F +G + + +C A+ +
Sbjct: 135 EPW--NYRNKMQFPIGIN-KGK----ILVGCFAQGSHNIIDTKNCHIQHTANNDLANAMR 187
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
+ ++ +PV+N + G R + R GR+ +++M + ++
Sbjct: 188 DIVEHLHIPVYNEDTHKGVMRHIIGRVGRN-------------------NDLMAVIVTAT 228
Query: 487 ATFDDA--VVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSI 544
A VV ERL P + Q+ Q N +LL
Sbjct: 229 KHLPRAKDVVRMLRERL---------------PNLVSIHQNIQTYHNNVIMGRDTQLLW- 272
Query: 545 PKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTL 604
G P I DS+ L F ISP +FFQVNT AE+LY +ADL
Sbjct: 273 ----GRPT---------IIDSLGRLNFHISPRSFFQVNTRQAERLYEQALAYADLHGTET 319
Query: 605 LFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664
+ D CGTGTI L LA R V GIE+ A+ DA +NA N +KN F+ A VM +
Sbjct: 320 VIDAYCGTGTITLFLAQRARKVYGIEIVQPAILDARKNARDNHVKNAEFIVGDATAVMPA 379
Query: 665 LLKDYLNP 672
L K + P
Sbjct: 380 LYKQGIRP 387
>gi|450066794|ref|ZP_21846195.1| putative RNA methyltransferase [Streptococcus mutans NLML9]
gi|449208593|gb|EMC09177.1| putative RNA methyltransferase [Streptococcus mutans NLML9]
Length = 451
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 152/378 (40%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L V R + L H++Y QL K+ + L K+ G+S
Sbjct: 71 LTVDYLRTGIADLGHLTYGQQLNFKRKQVINSLSKIA---------GIS----------- 110
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
+ LG YRNK + V + + GF FR+ A+ D
Sbjct: 111 ---DIDVADTLGMDNPTAYRNKAQVPVR-RVNGQLETGF----FRKNSHALMPIEDYYIQ 162
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+ + + ++ L++ DL ++ + +G R L VR G G+ +
Sbjct: 163 DKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYTGQIM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++ S F + E++ F P +IQ+ + A
Sbjct: 210 ----LVLVTTRSKIFR---IEQMIEKIVSEF-----------PAVKSIIQNINDRNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
+ R L GE D +E D++ R+ IS +F+QVNT+ AEKLY
Sbjct: 252 FGSEFRTLY-----GE-----DTIE----DTMLGNRYIISAQSFYQVNTVMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D++DL PD + D G GTIGL+ A +V V G+E+ +AV DA +NA +N I N +V
Sbjct: 298 DFSDLTPDDTVIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
AE M S K + P
Sbjct: 358 ADSAEKAMASWSKRGIKP 375
>gi|294887409|ref|XP_002772095.1| RNA m5u methyltransferase, putative [Perkinsus marinus ATCC 50983]
gi|239876033|gb|EER03911.1| RNA m5u methyltransferase, putative [Perkinsus marinus ATCC 50983]
Length = 534
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 103/398 (25%), Positives = 169/398 (42%), Gaps = 79/398 (19%)
Query: 306 PLAHMSYSVQLEHKKNSIAQMLKKLTRNARKAC-PNGVSLPEWIMKSREIGGLPCKLEGI 364
PL SY+ QL K+ I + TR + C P W + G C + I
Sbjct: 158 PLFTYSYAEQLRLKEQFIMHAARNFTREVKAHCEKRQYPFPNWARVHKNKPG--CTVHEI 215
Query: 365 LGSPLVN--GYRNKCEFSVGYS-LQ-AKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
+GSP N GYRNKCEF++GYS Q +KP VGF + +E P++ AC
Sbjct: 216 VGSPETNLEGYRNKCEFTIGYSDFQCSKPEVGF-VRRVEGHELLIESGKALPHIP--ACM 272
Query: 421 YA---SIFQEFLQQSD-LPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNIS 476
A + + L+ D + ++R + G WRQ+ +R SP +
Sbjct: 273 KAIEGELRKLVLENYDQVKPFSRHQKKGTWRQVMLR--WSPSR----------------- 313
Query: 477 EVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPAD 536
+ ML+ + ++ A + K +A A S +P++++ +Q + GV +
Sbjct: 314 DQMLMVVMCCEPYELAT------NIIKTWAESAANKSLPVPVSSVFMQTNNGVCDA---- 363
Query: 537 APLRLLSIPKADGEPEESNDVV-EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGD 595
D + E+ + + + R+ + L F + P +FFQ N + +KLY++
Sbjct: 364 ----------CDMKAEDLHHIYGDTRVMMDMLGLEFPLQPASFFQTNVVMCKKLYTMAVR 413
Query: 596 WADLG-PD----------------TLLFDVCCGTGTIGLTLAHRVG-------MVIGIEM 631
A G PD + DVC G GTI A +G V G+E+
Sbjct: 414 LALTGSPDGDDLPKLEELDSAKMPAAVVDVCSGVGTITQVFASILGPKPDGKPRVYGLEL 473
Query: 632 NASAVSDAHRNAEINGI-KNCRFVCAKAEDVMGSLLKD 668
AV DA +A N + + RF+ +AE+ + ++K+
Sbjct: 474 VPDAVEDAKASARANKLDSSVRFIAGRAEETIEDVIKE 511
>gi|399924483|ref|ZP_10781841.1| RNA methyltransferase [Peptoniphilus rhinitidis 1-13]
Length = 442
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 97/319 (30%), Positives = 140/319 (43%), Gaps = 56/319 (17%)
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGN-FREGVTAVEEPVDCPNVSEIACKY 421
I+ SP YRNK E++ G + P +G + N F E + E C V K
Sbjct: 107 IVPSPSHKFYRNKMEYTFGDEYKGGPLALGLHVKNRFHEIINTSE----CNIVDSDFNKI 162
Query: 422 ASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLI 481
S + + + +NR + GF R L +R+G G E+M++
Sbjct: 163 RSEVRNYFENLGKSHYNRKTHLGFLRHLLIRKGTKTG------------------EIMVL 204
Query: 482 AQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRL 541
S+ SE +R AF SL L ++ V N +DA +
Sbjct: 205 LATST--------QSELDR--DAFVKFLL----SLELYGKIVSIFH-VKNDTLSDAIV-- 247
Query: 542 LSIPKADGEPEESNDVV-EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
PEE N + + I + + L+F ISP +FFQ NT +AE LY++ + D
Sbjct: 248 ---------PEEINLIYGKNHIQEEVLGLKFKISPFSFFQTNTKSAEILYNIAREKID-A 297
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
D L+FD+ GTGTI LA VIG+E+ AV A NA++NGIKN F+
Sbjct: 298 KDKLVFDLYSGTGTITQMLAGSAKKVIGVEIVEEAVEAARENAKLNGIKNVEFIAEDVLK 357
Query: 661 VMGSLLKD----YLNPLRE 675
V+ SL K+ L+P RE
Sbjct: 358 VLDSLEKNPDIIVLDPPRE 376
>gi|239625789|ref|ZP_04668820.1| RNA methyltransferase [Clostridiales bacterium 1_7_47_FAA]
gi|239520019|gb|EEQ59885.1| RNA methyltransferase [Clostridiales bacterium 1_7_47FAA]
Length = 462
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 86/305 (28%), Positives = 130/305 (42%), Gaps = 41/305 (13%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREG--VTAVEEPVDCPNVSEIACK 420
GI SPL GYRNK EFS G ++ P LG R G V P DC V C+
Sbjct: 116 GIKASPLEKGYRNKMEFSFGDEVKDGP---LALGMHRRGSFYDIVTTP-DCQIVHPDFCR 171
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
+E+ ++ + + ++ G+ R L VR G E+ + V ++
Sbjct: 172 ILVATKEYFEELGTAFYKKLQHKGYLRHLLVRRAVKTG--------EILVDLVTSTQREY 223
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
+ A AV++ ERL G A ++ ++ +++V +DA
Sbjct: 224 LGGRDEA----AVLSGWKERLLALPVDGRFA--------GILHTENDSLADVVQSDATHV 271
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
L + ++ + LRF ISP +FFQ N++ AE LY +
Sbjct: 272 LYG---------------QDFFYEELLGLRFRISPFSFFQTNSMGAEVLYDTARGFVGET 316
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
D ++FD+ GTGTI LA V+G+E+ AV A NA +NG+ NC FV
Sbjct: 317 KDKVVFDLYSGTGTIAQILAPVAKKVVGVEIVEEAVEAAKVNAGLNGLDNCEFVAGDVLK 376
Query: 661 VMGSL 665
V+ L
Sbjct: 377 VIDDL 381
>gi|331702034|ref|YP_004398993.1| RNA methyltransferase, TrmA family [Lactobacillus buchneri NRRL
B-30929]
gi|329129377|gb|AEB73930.1| RNA methyltransferase, TrmA family [Lactobacillus buchneri NRRL
B-30929]
Length = 456
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 94/371 (25%), Positives = 145/371 (39%), Gaps = 79/371 (21%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ PL H+ Y QL+ K++ I K+ + G+ P
Sbjct: 85 IAPLQHLKYDAQLKFKQHQIQVDFDKMKLDVTVNPTIGMDDP------------------ 126
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
YRNK + V S+ + GF + + V + + P + E
Sbjct: 127 -------THYRNKAQIPVR-SINGQLQTGFYRKHSHDLVPIEDFYIQDPKIDEAVVVVRD 178
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
I ++F Q ++ N G R + VR G S M+I
Sbjct: 179 ILRKFRVQP----YDEQTNKGVVRNIMVRRGYY-------------------SHEMMIVL 215
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLS 543
++ E+L + A SLP ++Q NV P
Sbjct: 216 ITRT-----------EKLPSSSEIVAEVEQ-SLPEVKSIVQ------NVNPE-------- 249
Query: 544 IPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGP 601
K + + N V+ + I D++ L+F IS ++F+QVN + EKLY L ADL
Sbjct: 250 --KTNALMGKKNKVLAGKSTIEDTLLGLKFDISASSFYQVNPVQTEKLYDLATKKADLSA 307
Query: 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661
D ++ D CG GTI L++A V G+E+ AV DA +NA++N + N FV +KAE
Sbjct: 308 DDVVIDAYCGIGTISLSMARVAKQVYGVEIVPEAVEDAKKNAKLNNLTNVHFVASKAETQ 367
Query: 662 MGSLLKDYLNP 672
M +D L P
Sbjct: 368 MAKWQEDGLKP 378
>gi|253580204|ref|ZP_04857471.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848723|gb|EES76686.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 454
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 137/313 (43%), Gaps = 47/313 (15%)
Query: 354 IGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTA-VEEPVDCP 412
+ G + EGI GSP+ YRNK EFS G + + P LG ++G T V DC
Sbjct: 107 LNGTDYQWEGIHGSPIEFRYRNKMEFSFGDAYKDGP---LTLGLHKKGSTYDVLTADDCQ 163
Query: 413 NVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISE 472
V E K + E+ + ++ + + +++G+ R L +R G + G+
Sbjct: 164 LVHEDMTKILTCVHEYFLKRNVSYYKKMQHTGYLRHLLLRRGVTTGE------------- 210
Query: 473 VNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNV 532
++ V + + ++ + S E L G +I D +S+V
Sbjct: 211 -------ILVHVITTSQEEHDLESLKEELLALPLEGKIVGIMH------IIND--SLSDV 255
Query: 533 APADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSL 592
+D L + ++++ LRF IS +FFQ N+LAAE LYS+
Sbjct: 256 VQSDETRILYG---------------QDFFYETLLGLRFKISTFSFFQPNSLAAEVLYSI 300
Query: 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCR 652
++ D ++FD+ GTGTI A VIG+E+ AV A +NA +N + NC+
Sbjct: 301 VREYIGDTKDKVVFDLYSGTGTIAQLAASVADEVIGVEIVEEAVEAAKQNAALNNLSNCK 360
Query: 653 FVCAKAEDVMGSL 665
F+ V+ L
Sbjct: 361 FIVGDVLKVLDDL 373
>gi|449964926|ref|ZP_21811574.1| putative RNA methyltransferase [Streptococcus mutans 15VF2]
gi|449172024|gb|EMB74666.1| putative RNA methyltransferase [Streptococcus mutans 15VF2]
Length = 451
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 96/378 (25%), Positives = 152/378 (40%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L V R + L H++Y QL K+ + K+ G+S
Sbjct: 71 LTVDYLRTGIADLGHLTYGQQLNFKRKQVINSFSKIA---------GIS----------- 110
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
++ LG YRNK + V + + GF FR+ A+ D
Sbjct: 111 ---DIEVADTLGMDNPTAYRNKAQVPVR-RVNGQLETGF----FRKNSHALMPIEDYYIQ 162
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+ + + ++ L++ DL ++ + +G R L VR G G+ +
Sbjct: 163 DKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYTGQIM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++ S F + E++ F P +IQ+ + A
Sbjct: 210 ----LVLVTTRSKIFR---IEQMIEKIVSEF-----------PAVKSIIQNINDRNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
+ R L GE D +E D++ R+ IS +F+QVNT+ AEKLY
Sbjct: 252 FGSEFRTLY-----GE-----DTIE----DTMLGNRYIISAQSFYQVNTVMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D++DL PD + D G GTIGL+ A +V V G+E+ +AV DA +NA +N I N +V
Sbjct: 298 DFSDLAPDDTVIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
AE M S K + P
Sbjct: 358 ADSAEKAMASWSKRGIKP 375
>gi|406027506|ref|YP_006726338.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus buchneri CD034]
gi|405125995|gb|AFS00756.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus buchneri CD034]
Length = 456
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 94/371 (25%), Positives = 145/371 (39%), Gaps = 79/371 (21%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ PL H+ Y QL+ K++ I K+ + G+ P
Sbjct: 85 IAPLQHLKYDAQLKFKQHQIQVDFDKMKLDVTVNPTIGMDDP------------------ 126
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
YRNK + V S+ + GF + + V + + P + E
Sbjct: 127 -------THYRNKAQIPVR-SINGQLQTGFYRKHSHDLVPIEDFYIQDPKIDEAVVVVRD 178
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
I ++F Q ++ N G R + VR G + S M+I
Sbjct: 179 ILRKFRVQP----YDEQTNKGVVRNIMVRRG-------------------HYSHEMMIVL 215
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLS 543
++ E+L + A SLP ++Q NV P
Sbjct: 216 ITRT-----------EKLPSSSEIVAEIEQ-SLPEVKSIVQ------NVNPE-------- 249
Query: 544 IPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGP 601
K + + N V+ + I D++ L+F IS ++F+QVN + EKLY L ADL
Sbjct: 250 --KTNALMGKKNKVLAGKSTIEDTLLGLKFDISASSFYQVNPVQTEKLYDLATKKADLSA 307
Query: 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661
D ++ D CG GTI L++A V G+E+ AV DA +NA++N + N FV KAE
Sbjct: 308 DDVVIDAYCGIGTISLSMARVAKQVYGVEIVPEAVEDAKKNAKLNNLTNVHFVTGKAETQ 367
Query: 662 MGSLLKDYLNP 672
M +D L P
Sbjct: 368 MAKWQEDGLKP 378
>gi|314934062|ref|ZP_07841425.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus caprae
C87]
gi|313653173|gb|EFS16932.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus caprae
C87]
Length = 455
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 98/384 (25%), Positives = 156/384 (40%), Gaps = 85/384 (22%)
Query: 292 GSGLKVKS-ARDVVTP------------LAHMSYSVQLEHKKNSIAQMLKKLTRNARKAC 338
G L+VKS ++D V P L HM+Y QL+ KK + + + + +
Sbjct: 57 GKLLEVKSKSKDRVEPPCVYYYKCGGCQLQHMTYQAQLDMKKEQVVNLFHR--KGPFEDT 114
Query: 339 PNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNF 398
P ++ +G YRNK + VG + K GF +
Sbjct: 115 P---------------------IQPTVGMEQPWRYRNKSQIPVGKDKENKAITGF----Y 149
Query: 399 REGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPG 458
R+ + + C E K + +++L + ++ ++N SG R L VR G
Sbjct: 150 RQRSHDIIDMDSCLIQDEQHQKIMNHVKQWLNELNISIYNEKNQSGLMRHLVVRTG---- 205
Query: 459 KPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPL 518
+ E+M+I + F +A V ++L A+ P++
Sbjct: 206 --------------YHTDEMMVIFVTNGKKFKNADV--LVQKLISAY--------PNVTS 241
Query: 519 TALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAF 578
I D SNV + L + +I D +S + F IS +F
Sbjct: 242 IKQNINDTH--SNVIMGRQSVTLYG---------------KDKIVDQLSEVTFNISDQSF 284
Query: 579 FQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSD 638
+Q+N+ EKLY D+A L + ++ D CG GTIGL +A + V G+E+ SA+ D
Sbjct: 285 YQINSAQTEKLYQQAIDYAQLTGEEIVLDTYCGIGTIGLYMAPQAKHVYGVEVVPSAIKD 344
Query: 639 AHRNAEINGIKNCRFVCAKAEDVM 662
A NA N + N F C KAEDV+
Sbjct: 345 AEENATKNQLNNTTFECGKAEDVI 368
>gi|297545033|ref|YP_003677335.1| TrmA family RNA methyltransferase [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296842808|gb|ADH61324.1| RNA methyltransferase, TrmA family [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 453
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 95/361 (26%), Positives = 148/361 (40%), Gaps = 76/361 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
H+SY QL++K + L++ IG + K+ I+G
Sbjct: 85 FQHLSYEGQLKYKTQKVKDNLER------------------------IGKVYTKVHEIIG 120
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVD-CPNVSEIACKYASIF 425
YRNK +F VG L + GF + V P++ C +EI+ A
Sbjct: 121 MKEPQRYRNKAQFPVG-MLDGEVVTGFYAPRSHDIV-----PIESCMIQNEISDNIARTV 174
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
+ ++++ ++ V++ G R + R G EVM+I V+
Sbjct: 175 RNWIKKYNVSVYDEKAGKGLIRHIVTRVAFKTG------------------EVMVILVVN 216
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
E+L A L ++V+ + +NV + +
Sbjct: 217 GKHIPYK------EQLIDALKKEIKG------LKSVVLNINTKRTNVIMGKDNITIYG-- 262
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
S++++ D I +++F ISP +FFQVN + E LY ++ADL + +
Sbjct: 263 --------SDNII-----DYIKDIKFEISPLSFFQVNPVQTEVLYGKVLEYADLKGNETV 309
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
DV CG GTI L A + V GIE AV DA RNA INGIKN F+ +AE VM L
Sbjct: 310 IDVYCGIGTISLFAAQKAFFVYGIEAVHQAVEDAKRNAYINGIKNVEFISGQAEKVMPEL 369
Query: 666 L 666
+
Sbjct: 370 V 370
>gi|402837954|ref|ZP_10886469.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacteriaceae
bacterium OBRC8]
gi|402274385|gb|EJU23569.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacteriaceae
bacterium OBRC8]
Length = 544
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 81/138 (58%), Gaps = 2/138 (1%)
Query: 531 NVAPADAPLRLLSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEK 588
N P + ++ ++ K + + N ++ R I D I NL F I P +F+QVN++ EK
Sbjct: 232 NKIPVKSIVQNVNTKKTNVILSDKNILLYGREYIQDMIENLTFNIYPNSFYQVNSIQMEK 291
Query: 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI 648
+Y D+A+L ++D+ CG GTI L L+ + V GIE+ A A+ A +NA+IN I
Sbjct: 292 MYKRALDYANLQGTETVYDLYCGIGTITLLLSQKCKTVYGIEVVAQAIESAKQNAKINNI 351
Query: 649 KNCRFVCAKAEDVMGSLL 666
+N +F+C K ED + +L+
Sbjct: 352 ENAKFICGKVEDEIENLV 369
>gi|70954218|ref|XP_746166.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56526695|emb|CAH88281.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 733
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/350 (23%), Positives = 150/350 (42%), Gaps = 86/350 (24%)
Query: 370 VNGYRNKCEFSVGYSLQAKPTVGFMLG---------------NFREG-VTAVEEPV---- 409
+NGYRNKCEF++ Y +GF++G NF E ++ PV
Sbjct: 332 INGYRNKCEFTISYDENNNVEIGFVVGKVKTNMNETNDENNCNFSENNISNNPSPVNESH 391
Query: 410 -----------------------DCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFW 446
DC ++ + + ++ S+ PV++R +G W
Sbjct: 392 QTKLRNKKQKQCYFLNPIVKSIDDCIHIHSCMKEVVKEMKSIIKDSNYPVFDRVYKTGIW 451
Query: 447 RQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFA 506
R L +R + V+ ++ + + +LI +++ D++ + EF
Sbjct: 452 RLLVIRLNSKKELMITVQTYSLDQKKKRDIKRLLINRLTKKK-DESFM--EF-------- 500
Query: 507 AGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIH--D 564
+ +L +Q+H G SN D + N+ + H +
Sbjct: 501 -------SGFKVVSLYLQEH-GNSN----------------DSTDQSQNEHLWGVEHLEE 536
Query: 565 SISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPD--TLLFDVCCGTGTIGLTLA-- 620
+I +F I+P+ FFQVN + E LY D+ ++ + +FD+CCGTGTI + +A
Sbjct: 537 TILGNKFLITPSCFFQVNHTSCEILYKKVIDYVNINKNMKNYIFDLCCGTGTISICIANA 596
Query: 621 --HRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
H ++GI++ ++ A++NA+IN IKN +F+ + E++ +K+
Sbjct: 597 LKHEDTHIVGIDICEESIISANKNAQINKIKNYKFIKGRVEELFAGEIKN 646
>gi|347752051|ref|YP_004859616.1| TrmA family RNA methyltransferase [Bacillus coagulans 36D1]
gi|347584569|gb|AEP00836.1| RNA methyltransferase, TrmA family [Bacillus coagulans 36D1]
Length = 457
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 94/364 (25%), Positives = 144/364 (39%), Gaps = 89/364 (24%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
LAH+ Y QL +K+N + Q L ++ K+EG
Sbjct: 88 LAHIRYDGQLMYKENQVRQALARIG----------------------------KIEGARI 119
Query: 367 SPLVN-----GYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKY 421
P++ YRNK + VG K GF E + A E + P V+E
Sbjct: 120 HPMIGMDNPWHYRNKAQVPVGEK-NGKLVAGFFKPRTHEILDADESVIQLPAVNEAV--- 175
Query: 422 ASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLI 481
+ +E ++ +P ++ +SG R + VR GR G+ + V+LI
Sbjct: 176 -QVVKEICRELGIPAYDEEHHSGVLRHIMVRYGRKTGELM----------------VVLI 218
Query: 482 AQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRL 541
+ +V+ RL Q V N+ P + L
Sbjct: 219 TRTVELPHRKKLVDLVVSRLP---------------------QVKSIVHNINPKRTNVIL 257
Query: 542 LSIPKADGEPEE---SNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWAD 598
GE + N+V I+D I +++F IS +F+QVN + + LY ++A+
Sbjct: 258 -------GEKTKVLWGNEV----IYDKIGDIKFAISAPSFYQVNPVQTKVLYEKALEYAE 306
Query: 599 LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658
L + D CG GTI L LA + V G+E+ A+ DA RNA +NGI N F A
Sbjct: 307 LTGSETVIDAYCGIGTISLFLAQKARKVFGVEIVPEAIEDAKRNAALNGITNVEFEAGTA 366
Query: 659 EDVM 662
E V+
Sbjct: 367 ETVI 370
>gi|423070573|ref|ZP_17059349.1| hypothetical protein HMPREF9177_00666 [Streptococcus intermedius
F0413]
gi|355365659|gb|EHG13381.1| hypothetical protein HMPREF9177_00666 [Streptococcus intermedius
F0413]
Length = 451
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 101/380 (26%), Positives = 153/380 (40%), Gaps = 77/380 (20%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L + R + L H+SY QL K+ + L K I
Sbjct: 71 LDMAYLRTGIADLGHLSYPSQLAFKRKQVKDSLYK------------------------I 106
Query: 355 GGLP-CKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPN 413
GL ++ LG YRNK + V + + GF N + + + + P
Sbjct: 107 AGLSNVEVSPTLGMEQPLDYRNKAQIPVR-RVNGQLETGFFRKNSHDLLPIEDFYIQDPV 165
Query: 414 VSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEV 473
+ ++ ++ L++ DL ++ + +G R L VR G G
Sbjct: 166 IDQVIL----FTRDLLRRFDLKPYDEKEKTGLIRNLVVRRGHYSG--------------- 206
Query: 474 NISEVMLI-AQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNV 532
E+M+I S F V ERL +AF P++ I D +N
Sbjct: 207 ---EIMVILVTTRSKIFR---VEQLIERLVEAF--------PAIESIMQNINDQN--TN- 249
Query: 533 APADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSL 592
+I D D I D + N F I+ AF+QVNT AEKLY
Sbjct: 250 ----------TIFGKDWRTLHGRDY----ITDRMLNNDFQIAAPAFYQVNTEMAEKLYQT 295
Query: 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCR 652
D+++L D ++ D G GTIGL++A +V V G+E+ AV ++ +NAEINGI N
Sbjct: 296 AIDFSELAADDVVLDAYSGIGTIGLSVAKQVKQVYGVEVIPEAVENSQKNAEINGITNTH 355
Query: 653 FVCAKAEDVMGSLLKDYLNP 672
+VC AE+ M + K + P
Sbjct: 356 YVCDSAENAMANWSKQDIKP 375
>gi|345018081|ref|YP_004820434.1| TRAM domain-containing protein [Thermoanaerobacter wiegelii Rt8.B1]
gi|344033424|gb|AEM79150.1| deoxyribonuclease/rho motif-related TRAM [Thermoanaerobacter
wiegelii Rt8.B1]
Length = 391
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 135/297 (45%), Gaps = 52/297 (17%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKPTVGFML-GNFREGVTAVEEPVDCPNVSEIACKY 421
GI+ SP +GYRNK E++ G + +G G F E + + C V + K
Sbjct: 114 GIVKSPKEHGYRNKMEYTFGKDKEGNAALGLHRKGRFYEVIMTDK----CNIVEDDFLKA 169
Query: 422 ASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLI 481
++ ++ + LP +++ + GF R L VR+ G+ L N+ V +++ LI
Sbjct: 170 LNLTFDYAIKKGLPFYDKKTHEGFLRHLVVRKASKSGEIL--LNI-VTTTQLQHDFTELI 226
Query: 482 AQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL-- 539
+ +A F+ +V G + N + +DA +
Sbjct: 227 ERYKNANFESRLV-------------GVLHTQ-----------------NDSWSDAVVCE 256
Query: 540 RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
RL + D EE I +L+F IS +FFQ N+ AEKLY ++A
Sbjct: 257 RLEVLYGRDYLIEE------------ILDLKFKISAFSFFQTNSYGAEKLYETVREFAGD 304
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCA 656
D ++FD+ GTGTIG+ +A VIGIE+ AV A +NAE+NG++NC F+
Sbjct: 305 VSDKIVFDLYSGTGTIGIIMAPMAKKVIGIELVEEAVMSARKNAELNGLENCTFIAG 361
>gi|336115310|ref|YP_004570077.1| TrmA family RNA methyltransferase [Bacillus coagulans 2-6]
gi|335368740|gb|AEH54691.1| RNA methyltransferase, TrmA family [Bacillus coagulans 2-6]
Length = 457
Score = 101 bits (252), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 94/364 (25%), Positives = 144/364 (39%), Gaps = 89/364 (24%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
LAH+ Y QL +K+N + Q L ++ K+EG
Sbjct: 88 LAHIRYDGQLMYKENQVRQALARIG----------------------------KIEGARI 119
Query: 367 SPLVN-----GYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKY 421
P++ YRNK + VG K GF E + A E + P V+E
Sbjct: 120 HPMIGMDNPWHYRNKAQVPVGEK-NGKLVAGFFKPRTHEILDADESVIQLPAVNEAV--- 175
Query: 422 ASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLI 481
+ +E ++ +P ++ +SG R + VR GR G+ + V+LI
Sbjct: 176 -QVVKEICRELGIPAYDEEHHSGVLRHIMVRYGRKTGELM----------------VVLI 218
Query: 482 AQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRL 541
+ +V+ RL Q V N+ P + L
Sbjct: 219 TRTVELPHRKKLVDLVVSRLP---------------------QVKSIVHNINPKRTNVIL 257
Query: 542 LSIPKADGEPEE---SNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWAD 598
GE + N+V I+D I +++F IS +F+QVN + + LY ++A+
Sbjct: 258 -------GEKTKVLWGNEV----IYDKIGDIKFAISAPSFYQVNPVQTKVLYEKALEYAE 306
Query: 599 LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658
L + D CG GTI L LA + V G+E+ A+ DA RNA +NGI N F A
Sbjct: 307 LTGSETVIDAYCGIGTISLFLAQKARKVFGVEIVPEAIEDAKRNAALNGITNVEFEAGTA 366
Query: 659 EDVM 662
E V+
Sbjct: 367 ETVI 370
>gi|339449293|ref|ZP_08652849.1| RNA methyltransferase, TrmA family protein [Lactobacillus
fructivorans KCTC 3543]
Length = 458
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 67/104 (64%)
Query: 559 EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLT 618
+A I D + + +F ISP +F+QVN + EKLYSL D A L D ++ D CG GTI L
Sbjct: 267 KAYIEDELLDTKFLISPMSFYQVNPIQTEKLYSLAIDKAQLSKDDVVVDAYCGIGTISLA 326
Query: 619 LAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
+A +V V G+++ + A+ DA +NA++N I N FV AKAED M
Sbjct: 327 MAPKVKHVYGVDVVSEAIEDARKNAKLNQIDNATFVIAKAEDQM 370
>gi|407478175|ref|YP_006792052.1| TrmA family RNA methyltransferase [Exiguobacterium antarcticum B7]
gi|407062254|gb|AFS71444.1| RNA methyltransferase, TrmA family [Exiguobacterium antarcticum B7]
Length = 454
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 92/375 (24%), Positives = 148/375 (39%), Gaps = 92/375 (24%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H+SY +L+ K N + +L GL + +G
Sbjct: 85 LQHLSYEAELQFKHNRVRDAFARL------------------------AGLEIPVHETMG 120
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
GYRNK + V + + M G +++ + + C ++ + +
Sbjct: 121 MEDPWGYRNKAQVPVAFQ-----SNKLMAGFYQKRSHRIIDMDYCLIQNKENDEAIQAVR 175
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
+ L +P ++ KNSG R + R G + + ++L+ +V
Sbjct: 176 KVLADLKVPAYDEKKNSGVIRHIMARHGYHTNELM----------------IVLVTKVKQ 219
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
D +V +G+ P + SI +
Sbjct: 220 LRGVDKIV--------------------------------EGILKAVP-----NVTSI-Q 241
Query: 547 ADGEPEESNDVVEAR---------IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWA 597
+ P+E+N ++ R I D I+ L + ISP +FFQVN L EKLY ++A
Sbjct: 242 HNINPDETNVILGKRNIVLHGPSVIRDQIAGLTYEISPHSFFQVNPLQTEKLYGKALEYA 301
Query: 598 DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAK 657
L D ++ D CG G+I L+LA + V GIEM A+ DA RNA+ NGI N F
Sbjct: 302 QLTGDEIVVDAYCGIGSISLSLAQQAKHVYGIEMVPQAIDDARRNAKANGIDNVSFEYGT 361
Query: 658 AEDVMGSLLKDYLNP 672
AE VM +L+K+ + P
Sbjct: 362 AETVMPALVKNGIKP 376
>gi|424787508|ref|ZP_18214274.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
intermedius BA1]
gi|422113803|gb|EKU17530.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
intermedius BA1]
Length = 543
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 99/379 (26%), Positives = 152/379 (40%), Gaps = 75/379 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L + R + L H+SY QL K+ + L K I
Sbjct: 71 LDMAYLRTGIADLGHLSYPSQLAFKRKQVKDSLYK------------------------I 106
Query: 355 GGLP-CKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPN 413
GL ++ LG GYRNK + V + + GF N + + + + P
Sbjct: 107 AGLSNVEVSPTLGMEQPLGYRNKAQIPVR-RVNGQLETGFFRKNSHDLLPIEDFYIQDPV 165
Query: 414 VSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEV 473
+ ++ ++ L++ DL ++ + +G R L VR G G
Sbjct: 166 IDQVIL----FTRDLLRRFDLKPYDEKEKTGLIRNLVVRRGHYSG--------------- 206
Query: 474 NISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVA 533
E+M+I + V ERL + F P++ I D +N
Sbjct: 207 ---EIMVILVTTRPKI--FRVEQLIERLVETF--------PAIESIMQNINDQN--TN-- 249
Query: 534 PADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLG 593
+I D D I D + N F I+ AF+QVNT AEKLY
Sbjct: 250 ---------TIFGKDWRTLHGRDY----IIDRMLNNDFQIAAPAFYQVNTEMAEKLYQTA 296
Query: 594 GDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRF 653
D+++L D ++ D G GTIGL++A +V V G+E+ AV ++ +NAEINGI N +
Sbjct: 297 IDFSELAADDVVLDAYSGIGTIGLSVAKQVKQVYGVEVIPEAVENSQKNAEINGITNTHY 356
Query: 654 VCAKAEDVMGSLLKDYLNP 672
VC AE+ M + K + P
Sbjct: 357 VCDSAENAMANWSKQGIKP 375
>gi|423201182|ref|ZP_17187762.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aeromonas veronii
AER39]
gi|404617754|gb|EKB14688.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aeromonas veronii
AER39]
Length = 450
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 138/314 (43%), Gaps = 58/314 (18%)
Query: 354 IGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPN 413
+G P K ILG YRNK +++V A +GF + + +TA + V P
Sbjct: 107 LGDTPVK--DILGMESPFAYRNKAQYAV-RGCDAGAEIGFYRKHSHDLITADDCAVQDPL 163
Query: 414 VSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEV 473
E+ + + +++ D+ ++ +SG R L R+G G E+ + V
Sbjct: 164 HVELNAR----VRNWMRAHDIAAYDEVNHSGCVRNLMTRKGFKSG--------ELMVVLV 211
Query: 474 NISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVA 533
+ E + F A A+ LP+T LV + +N
Sbjct: 212 TLGEEL------------------------PFEAELLAALSDLPVTTLVQNINDERTN-- 245
Query: 534 PADAPLRLLSIPKADGEPEESNDVV--EARIHDSISNLRFCISPTAFFQVNTLAAEKLYS 591
R+L +N V+ E I D I L F ISP +FFQ N + LYS
Sbjct: 246 ------RILG---------ATNRVLLGEGVIRDKIHELEFEISPLSFFQNNPTQTDVLYS 290
Query: 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNC 651
++A+L + +FD+ CG GTI L LA + V+GIE SA+SDA RNA +NGI++
Sbjct: 291 SALEYAELTGNETVFDIYCGIGTISLFLAGKAAKVVGIESVESAISDARRNAALNGIEHT 350
Query: 652 RFVCAKAEDVMGSL 665
F KAE +M L
Sbjct: 351 EFHVGKAEQLMPEL 364
>gi|238926776|ref|ZP_04658536.1| TrmA family RNA methyltransferase [Selenomonas flueggei ATCC 43531]
gi|238885308|gb|EEQ48946.1| TrmA family RNA methyltransferase [Selenomonas flueggei ATCC 43531]
Length = 465
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 100/362 (27%), Positives = 147/362 (40%), Gaps = 74/362 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H+SY QL K+ +A L + + LP+ +P +E +
Sbjct: 97 LQHLSYEAQLRTKRAQVADALIHIGK-----------LPQ----------IPV-METLRA 134
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
N YRNK +F +G + + ++G F +G + +C A+ +
Sbjct: 135 EEPWN-YRNKMQFPIG-----RNSGKIVIGCFAQGSHRIINTENCHIQRAENNDLANAAR 188
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
E +Q +PV+N + G R + R GRS +++M I ++
Sbjct: 189 EIAEQLHIPVYNEDTHKGVLRHIVGRVGRS-------------------NDLMAIIVTAT 229
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
A +F R+ + LP V Q+ Q N +LL
Sbjct: 230 KQLPRA---KDFVRMMR----------ERLPNLVSVHQNIQTYRNNVIMGRDTQLLW--- 273
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
G P I DS+ L F ISP +FFQVNT AE+LY +ADL +
Sbjct: 274 --GRPT---------IIDSLGRLNFHISPRSFFQVNTRQAERLYEQALTYADLHGTETVI 322
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
D CGTGTI L LA + V GIE+ A+ DA +NA N +KN F+ A VM +L
Sbjct: 323 DAYCGTGTITLFLAQKARKVYGIEIVQPAILDARKNARDNNVKNAEFIVGDATAVMPALY 382
Query: 667 KD 668
K
Sbjct: 383 KQ 384
>gi|355630232|ref|ZP_09050761.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp.
7_3_54FAA]
gi|354818740|gb|EHF03206.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp.
7_3_54FAA]
Length = 458
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 132/311 (42%), Gaps = 50/311 (16%)
Query: 360 KLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFM--LGNFREGVTAVEEPVDCPNVSEI 417
+ EGI GSPL + YRNK EFS G ++ P M G+F + VT E C V +
Sbjct: 111 EFEGIKGSPLADCYRNKMEFSFGDEVKDGPLALGMHKRGSFYDVVTTGE----CRIVHKD 166
Query: 418 ACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPL-DVENLEVNISEVNIS 476
C + + ++ ++ + + +++G+ R L VR G+ L D+ + +++ +
Sbjct: 167 FCDILLCTKAYFEEKEVGFYKKMQHTGYLRHLLVRRAVKTGEILLDL----ITTTQIGVE 222
Query: 477 EVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPAD 536
E K AG +LPL
Sbjct: 223 E------------------------EKELLAGWLERLLALPLEG-------------KMA 245
Query: 537 APLRLLSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
L + AD +E +V+ + + + L+F ISP +FFQ N+L AE LY
Sbjct: 246 GILHTKNDSLADAVKDEGTEVLYGKDYFFEELLGLKFRISPFSFFQTNSLGAEVLYEKTR 305
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
++ ++FD+ GTGTI LA V+G+E+ AV A NA +NG+ NC F+
Sbjct: 306 EYVGETKGKVVFDLYSGTGTIAQILAPVAEKVVGVEIVKEAVEAAKENARLNGLDNCEFI 365
Query: 655 CAKAEDVMGSL 665
V+ L
Sbjct: 366 AGDVLKVVDEL 376
>gi|218134835|ref|ZP_03463639.1| hypothetical protein BACPEC_02738 [[Bacteroides] pectinophilus ATCC
43243]
gi|217990220|gb|EEC56231.1| 23S rRNA (uracil-5-)-methyltransferase RumA [[Bacteroides]
pectinophilus ATCC 43243]
Length = 489
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/362 (24%), Positives = 151/362 (41%), Gaps = 68/362 (18%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L MSY QL K+N +A LK+L G+ +++M + G+
Sbjct: 92 LQEMSYEAQLRFKQNKVANNLKRL---------GGLGEADYVMHP---------IVGMTA 133
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
YRNK +F VG +GF G + + + +DC + I +
Sbjct: 134 PDEPYHYRNKAQFPVGCDRDGNIKIGFYAGRTHD----IIDYMDCCIGDPVNKDILRIVR 189
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
+++ +++ +N +SG R + +R GR+ G+ V L+
Sbjct: 190 QWMTDNNIKPYNEENHSGVVRHILIRTGRATGEIC----------------VCLVINADK 233
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
D++V LAK +T+++I ++ +NV L P
Sbjct: 234 LQRYDSLVGE----LAKIDG-----------MTSIMINVNREKTNVILGRHCETLWGRPY 278
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
I D I ++R+ ISP +F+QVN + +++Y ++A L + ++
Sbjct: 279 ---------------IEDCIGDVRYRISPLSFYQVNPVQTKRMYDKVLEYAQLTGNEAVW 323
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
D+ CG GTI L LA V G+E+ A+ DA NA +N I N +F KAE+V+
Sbjct: 324 DLYCGIGTISLFLAKNAKKVYGVEIVPQAIEDAGNNAALNNIDNAQFFVGKAEEVVPEFY 383
Query: 667 KD 668
K+
Sbjct: 384 KN 385
>gi|403046142|ref|ZP_10901616.1| RNA methyltransferase [Staphylococcus sp. OJ82]
gi|402764090|gb|EJX18178.1| RNA methyltransferase [Staphylococcus sp. OJ82]
Length = 453
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 88/356 (24%), Positives = 150/356 (42%), Gaps = 72/356 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L HM+Y QL KK + + RKA + I+ IG +
Sbjct: 85 LQHMTYQAQLNMKKEQVVNLFH------RKA-----DFKDTIIHDT-IG---------MD 123
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
+P YRNK + VG + + K GF +R+ + + +C + + +
Sbjct: 124 NPWF--YRNKSQVPVGKNNENKVITGF----YRQRSHDIIDMDECLIQDNMHQDVLNQLK 177
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
+ + ++ ++N K G R + +R G E+M++ +
Sbjct: 178 LWFNELNISIYNERKKQGLMRHVVIRTGHHS------------------RELMVVFVTNG 219
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
F + V +E +L AF P + + D SNV + L
Sbjct: 220 KKFKQSDVLTE--KLVAAF--------PEIVSVKHNVNDTH--SNVIMGETSYTLYG--- 264
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
+A I D++S++ F IS +F+Q+N++ EKLY ++A+L + +
Sbjct: 265 ------------KAEIQDTLSDVTFKISDQSFYQINSIQTEKLYQRAIEYAELKGEETIL 312
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
D CG GTIGL +A + V G+E+ A++DA +NA +N +N FVC KAE+V+
Sbjct: 313 DTYCGIGTIGLYMAPKAQHVYGVEIVPEAIADAKQNATLNQFENTTFVCGKAEEVI 368
>gi|341820372|emb|CCC56641.1| trmA family tRNA (Uracil-5-)-methyltransferase [Weissella
thailandensis fsh4-2]
Length = 469
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 96/378 (25%), Positives = 157/378 (41%), Gaps = 93/378 (24%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ PLAH+ Y QL+ K+ IA++ K + A G+ P
Sbjct: 99 IAPLAHLKYDAQLKFKQQQIAELFNKQHVDVNVAPTIGMENP------------------ 140
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREG---VTAVEE-PVDCPNVSEIAC 419
GYRNK + ++ + T GF FR G + +E+ + P +
Sbjct: 141 -------TGYRNKAQIP-AREIKGQLTTGF----FRRGSHRLMPIEDFYIQDPEID---- 184
Query: 420 KYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVM 479
K I ++ L++ + ++ + G R + VR G S M
Sbjct: 185 KAIVIIRDILRKFHIAAYDEVHHKGVIRNIMVRRGYY-------------------SHEM 225
Query: 480 LIAQVSSATFDDAVVNSEFERLAKAFAAGATASSP----SLPLTALVIQD-HQGVSNVAP 534
++ V+ + +R+ GA P +LP +IQ+ +Q +NV
Sbjct: 226 MVVLVTRS-----------KRIP-----GANIIIPQIKEALPEVTSIIQNINQDKTNVIL 269
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
D L N V++ D++ + F I P +F+QVN E LY L
Sbjct: 270 GDVNHVLWG-----------NKVIK----DTLFDKTFAIGPNSFYQVNPQTTEVLYKLAA 314
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D A+L + + D G GTI LT+A +V V+G+E+ +A+ DA RNA++N + N +F
Sbjct: 315 DKAELTGNETVIDAYSGIGTISLTIADKVKSVLGVEVVPAAIDDAKRNADLNNVHNVKFE 374
Query: 655 CAKAEDVMGSLLKDYLNP 672
KAE+ M + +D L P
Sbjct: 375 LGKAEEKMVAWQQDGLQP 392
>gi|406678513|ref|ZP_11085688.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aeromonas veronii
AMC35]
gi|404621626|gb|EKB18492.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aeromonas veronii
AMC35]
Length = 450
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 149/333 (44%), Gaps = 58/333 (17%)
Query: 337 ACPNGVSLPEWIMKS--REIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFM 394
A P + L + +++S ++G ++ ILG YRNK +++V A +GF
Sbjct: 86 AYPAQLKLKQALVQSALEQVGLGDTPVKDILGMESPFAYRNKAQYAV-RGCDAGAEIGFY 144
Query: 395 LGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREG 454
+ + +TA + V P E+ + + +++ D+ ++ +SG R L R+G
Sbjct: 145 RKHSHDLITADDCAVQDPLHVELNAR----VRNWMRAHDIAAYDEVNHSGCVRNLMTRKG 200
Query: 455 RSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSP 514
G E+ + V + E + F A A+
Sbjct: 201 FKSG--------ELMVVLVTLGEEL------------------------PFEAELLAALS 228
Query: 515 SLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVV--EARIHDSISNLRFC 572
LP+T LV Q ++N + R+L N V+ E I D I L F
Sbjct: 229 DLPVTTLV----QNINN----ERTNRILG---------AINRVLLGEGVIRDKIHELEFE 271
Query: 573 ISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMN 632
ISP +FFQ N + LYS ++A+L + +FD+ CG GTI L LA + V+GIE
Sbjct: 272 ISPLSFFQNNPTQTDVLYSSALEYAELTGNETVFDIYCGIGTISLFLAGKAAKVVGIESV 331
Query: 633 ASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
SA+SDA RNA +NGI++ F KAE +M L
Sbjct: 332 ESAISDARRNAALNGIEHTEFHVGKAEQLMPEL 364
>gi|417004784|ref|ZP_11943423.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
agalactiae FSL S3-026]
gi|341577766|gb|EGS28173.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
agalactiae FSL S3-026]
Length = 551
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 105/416 (25%), Positives = 165/416 (39%), Gaps = 77/416 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGN-DEGLAGD---GSGLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGE+ + G G +E L GL R + L H++Y QL
Sbjct: 33 ENALPGEIIKMRVLKLRKRIGYGKVEEYLTTSPHRNEGLDYTYLRTGIADLGHLTYEQQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K+ +A L K+ + +E LG + YRNK
Sbjct: 93 LFKQKQVADNLYKIAHIS-----------------------DVLVEPTLGMTIPLAYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N V+ + + + + + ++ L++ D+
Sbjct: 130 AQVPVR-RVDGQLETGFFRKNSHTLVSIEDYLIQEKEIDALI----NFTRDLLRKFDVKP 184
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
++ + SG R L VR G G+ + +++ F ++
Sbjct: 185 YDEEQQSGLIRNLVVRRGHYTGQLM-----------------LVLVTTRPKIFR---IDQ 224
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESND 556
E+L AF PS+ I D SNV R L +D
Sbjct: 225 MIEKLVSAF--------PSVVSIMQNINDRN--SNVIFG-KEFRTLY----------GSD 263
Query: 557 VVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIG 616
+E D + + IS +F+QVNT AEKLY D++DL + ++ D G GTIG
Sbjct: 264 TIE----DQMLGNTYAISAQSFYQVNTEMAEKLYQKAIDFSDLNSEDIVIDAYSGIGTIG 319
Query: 617 LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
L++A +V V G+E+ AVSDA NA NGI N +V AE+ M LK+ + P
Sbjct: 320 LSVAKQVKHVYGVEVVEKAVSDAKENATRNGITNSTYVADSAENAMAKWLKEGIKP 375
>gi|304316267|ref|YP_003851412.1| TrmA family RNA methyltransferase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302777769|gb|ADL68328.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 452
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 68/114 (59%)
Query: 559 EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLT 618
+ I D I + +F ISP +FFQVN + + LY ++ADL D ++ DV CG GTI +
Sbjct: 263 DGYITDYIGDKKFEISPLSFFQVNPIQTKVLYEKALEYADLKGDEIVIDVYCGIGTISIF 322
Query: 619 LAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
A V V GIE+ + AV DA RNA INGI N F+ KAE VM L K+ L P
Sbjct: 323 FAKYVKHVYGIEVVSDAVEDAKRNAAINGINNADFIAGKAEHVMKRLYKEGLMP 376
>gi|46447178|ref|YP_008543.1| rRNA methyltransferse [Candidatus Protochlamydia amoebophila UWE25]
gi|51316628|sp|Q6MAY1.1|Y1544_PARUW RecName: Full=Uncharacterized RNA methyltransferase pc1544
gi|46400819|emb|CAF24268.1| putative rRNA methyltransferse [Candidatus Protochlamydia
amoebophila UWE25]
Length = 442
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 127/289 (43%), Gaps = 32/289 (11%)
Query: 373 YRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQS 432
YRNK E + + +G ++ R V ++E C + + A Q++ S
Sbjct: 95 YRNKMELTFSSDKAGRRYLGLIMQGTRGHVFQMKE---CLLANGWFAQAARAIQKWWDNS 151
Query: 433 DLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDA 492
D+ ++ K+ G R LT+REG G L VML S D A
Sbjct: 152 DVQAYHAIKDRGSLRTLTLREGLRTGDRL----------------VMLTV---SGNPDYA 192
Query: 493 VVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPE 552
+ S+ + + S+ L+ V Q ++ P + LL P E
Sbjct: 193 LTKSQLQSFVQVLRDSIELSNSDQKLS--VFLRIQQIAKGRPTNFYEMLLYGPDHIREKL 250
Query: 553 ESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGT 612
D EA I L F ISP+AFFQ NT AEKLYS ADL +++D+ CGT
Sbjct: 251 YLPDFNEA-----IQTLNFRISPSAFFQPNTEQAEKLYSQALKLADLSASHVVYDLYCGT 305
Query: 613 GTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661
GT+G+ A V VIGIE++ +V DA N + NG+ N V K+ DV
Sbjct: 306 GTLGICSAKYVKEVIGIELSRESVLDARENVKENGLSN---VTIKSGDV 351
>gi|77413832|ref|ZP_00790011.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae 515]
gi|77160132|gb|EAO71264.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae 515]
Length = 453
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 104/416 (25%), Positives = 166/416 (39%), Gaps = 77/416 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGN-DEGLAGD---GSGLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGE+ + G G +E L GL R + L H++Y QL
Sbjct: 33 ENALPGEIIQMRVLKLRKRIGYGKVEEYLTTSPHRNEGLDYTYLRTGIADLGHLTYEQQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K+ +A L K+ + +E LG + YRNK
Sbjct: 93 LFKQKQVADNLYKIAHIS-----------------------DVLVEPTLGMTIPLAYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N V+ + + + + + ++ L++ D+
Sbjct: 130 AQVPVR-RVDGQLETGFFRKNSHTLVSIEDYLIQEKEIDALI----NFTRDLLRKFDVKP 184
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
++ + SG R L VR G G+ + +++ F +++
Sbjct: 185 YDEEQQSGLIRNLVVRRGHYTGQLM-----------------LVLVTTRPKIF---LIDQ 224
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESND 556
E+L AF PS+ I D SNV I + +D
Sbjct: 225 MIEKLVSAF--------PSVVSIMQNINDRN--SNV-----------IFGKEFRTLYGSD 263
Query: 557 VVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIG 616
+E D + + IS +F+QVNT AEKLY D++DL + ++ D G GTIG
Sbjct: 264 TIE----DQMLGNTYAISAQSFYQVNTEMAEKLYQKAIDFSDLNSEDIVIDAYSGIGTIG 319
Query: 617 LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
L++A +V V G+E+ AVSDA NA NGI N +V AE+ M LK+ + P
Sbjct: 320 LSVAKQVKHVYGVEVVEKAVSDAKENATRNGITNSTYVADSAENAMAKWLKEGIKP 375
>gi|326391400|ref|ZP_08212937.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus
JW 200]
gi|325992535|gb|EGD50990.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus
JW 200]
Length = 450
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 133/297 (44%), Gaps = 52/297 (17%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKPTVGFML-GNFREGVTAVEEPVDCPNVSEIACKY 421
GI+ SP +GYRNK E++ G + +G G F E + + C V + K
Sbjct: 114 GIVKSPKEHGYRNKMEYTFGKDKEGNAALGLHRKGRFYEVIMTDK----CNIVEDDFLKA 169
Query: 422 ASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLI 481
++ ++ + LP +++ + GF R L VR+ G+ L N+ V +++ LI
Sbjct: 170 LNLTFDYAIKKALPFYDKKTHEGFLRHLVVRKASKSGEIL--LNI-VTTTQLQHDFTELI 226
Query: 482 AQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL-- 539
+ +A F +V G + N + +DA +
Sbjct: 227 ERYKNANFGSRLV-------------GVLHTQ-----------------NDSWSDAVVCE 256
Query: 540 RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
RL + D EE I +L+F IS +FFQ N+ AEKLY ++A
Sbjct: 257 RLEVLYGRDYLIEE------------ILDLKFKISAFSFFQTNSYGAEKLYETVREFAGD 304
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCA 656
D ++FD+ GTGTIG+ +A VIGIE+ AV A NAE+NG+KNC F+
Sbjct: 305 VSDKIVFDLYSGTGTIGIIMAPMAKKVIGIELVEEAVMSARENAELNGLKNCTFIAG 361
>gi|407472955|ref|YP_006787355.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium acidurici
9a]
gi|407049463|gb|AFS77508.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium acidurici
9a]
Length = 454
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 129/302 (42%), Gaps = 54/302 (17%)
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFML---GNFREGVTAVEEPVDCPNVSEIACK 420
I+ SP YRNK EF+ G ++ + + G F E V DC V E
Sbjct: 116 IVPSPNKFEYRNKMEFTFG-DVEKGGELALGMHEKGRFYEIVVVD----DCKIVDEDFTS 170
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
+ E+ ++ P +N+ ++ G R L VR K + + + +N+ + E+ L
Sbjct: 171 ILTTILEYFREKKTPFYNKNRHEGILRHLVVR------KAIKEKQILINLVTSSQGELQL 224
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
V D +NS+ + + G + + S L QD+
Sbjct: 225 DELVEKIK--DLKLNSKLKGILHTINDGLSDTVQSDETRILYGQDY-------------- 268
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
I + + L+F IS +FFQ N+L AEKLYS+ D+A
Sbjct: 269 ---------------------ITEELLGLKFKISAFSFFQTNSLGAEKLYSVVRDFAGET 307
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
D ++FD+ CGTGTI +A V GIE+ AV A NAE+NG+ NC F+ A D
Sbjct: 308 KDKVVFDLYCGTGTIAQIVAPIAKKVYGIEIVEEAVERAKENAELNGLDNCEFI---AGD 364
Query: 661 VM 662
VM
Sbjct: 365 VM 366
>gi|345304392|ref|YP_004826294.1| RNA methyltransferase, TrmA family [Rhodothermus marinus
SG0.5JP17-172]
gi|345113625|gb|AEN74457.1| RNA methyltransferase, TrmA family [Rhodothermus marinus
SG0.5JP17-172]
Length = 466
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 104/369 (28%), Positives = 153/369 (41%), Gaps = 88/369 (23%)
Query: 309 HMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLP-CKLEGILGS 367
H+ Y QLE K+ S+ + L GG ++ L S
Sbjct: 85 HVRYEAQLEAKRQSVYEALVHH------------------------GGFEDVEVRPTLPS 120
Query: 368 PLVNGYRNKCEFSV-------------GYSLQAKPTVGFML-GNFREGVTAVEEPVDCPN 413
P + GYRNK EFS G L VG + GNF + V +EE C
Sbjct: 121 PRLYGYRNKMEFSFSADRWLTPDEIASGRPLDRHFAVGLHVPGNFYK-VIDLEE---CHL 176
Query: 414 VSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEV 473
I + + + F + W+ ++ G+ R L +R G G
Sbjct: 177 PEPITVRLLNELRAFFKAKGWEPWDIRRHEGYLRHLVIRTGTRTG--------------- 221
Query: 474 NISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVA 533
EVM+ + ++ +D+A R+A+ GA +T LV + + V+
Sbjct: 222 ---EVMV--NLVTSRYDEA-------RMAEL---GAFLQEQFPEVTTLVNTINTRPAQVS 266
Query: 534 PADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLG 593
+A + IHD I RF I+P AFFQ NT AE+LY++
Sbjct: 267 YGEATYTIFG---------------PGVIHDCIGPFRFEIAPDAFFQTNTEQAERLYAVT 311
Query: 594 GDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRF 653
+ A L PD L++D+ CGTGTI + +A +V VIG+E+ SAV +A NA N I NC F
Sbjct: 312 RELAALRPDDLVYDLYCGTGTISIFIAPQVRHVIGVELVESAVENARANAAANHITNCTF 371
Query: 654 VCAKAEDVM 662
V +V+
Sbjct: 372 VAGDLLEVL 380
>gi|73662203|ref|YP_300984.1| RNA methyltransferase [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72494718|dbj|BAE18039.1| putative RNA methyltransferase [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 453
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 90/356 (25%), Positives = 142/356 (39%), Gaps = 72/356 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L HM+Y QL KK + + + R+ G + +G
Sbjct: 85 LQHMTYQAQLNMKKEQVVNLFQ-----------------------RKAGFKDTIIHDTIG 121
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
YRNK + VG + + K GF + + E + E+ K + F
Sbjct: 122 MENPWYYRNKSQIPVGKNNENKVITGFYRQRSHDIINMDECLIQDQLHQEVINKLKAWFN 181
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
E ++ V+N K G R + +R G E+M+I +
Sbjct: 182 EL----NISVYNERKKQGMMRHVVIRTGHHS------------------RELMVIFVTNG 219
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
F + +E RL + F A + + D SNV L
Sbjct: 220 KKFKQGDILTE--RLKQHFPAIVSIKQN--------VNDTH--SNVIMGQNSYTLY---- 263
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
G+ E I D +S++ F I+ +F+Q+N++ EKLY D+A+L + +
Sbjct: 264 --GKDE---------IVDMLSDVTFKINDQSFYQINSIQTEKLYQRAIDYAELQGEETVL 312
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
D CG GTIGL +A + V G+E+ A++DA +NA IN +N FVC KAE+V+
Sbjct: 313 DTYCGIGTIGLYMAPKAKHVYGVEVVPEAITDAQQNATINQFENTTFVCGKAEEVI 368
>gi|416356062|ref|ZP_11681924.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
C str. Stockholm]
gi|338195101|gb|EGO87432.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
C str. Stockholm]
Length = 400
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 103/357 (28%), Positives = 149/357 (41%), Gaps = 77/357 (21%)
Query: 310 MSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPL 369
+SY QLE KK+ + KL NA G+S E++ GI GSP
Sbjct: 35 LSYEKQLEIKKDQVL----KLFENA------GISGFEFL--------------GIQGSPE 70
Query: 370 VNGYRNKCEFSVG-YSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEF 428
YRNK EF+ G + T+G G+ + +E C V E+
Sbjct: 71 EFEYRNKMEFTFGDMEKGGELTLGMHAQGKSFGIISADE---CKIVDSDFNLILKTVLEY 127
Query: 429 LQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML-IAQVSSA 487
+ +LP + + G+ R L +R+GR N E+M+ + S
Sbjct: 128 FRGKELPHYRIMSHEGYLRNLVIRKGR------------------NTQEIMVNLVTTSQR 169
Query: 488 TFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKA 547
FD SEF L K L ++ + +S+V AD
Sbjct: 170 EFD----LSEFVELLKGLNYKG-------ELKGILHTVNDSLSDVVQAD----------- 207
Query: 548 DGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
S +V+ R I + + L+F ISP +FFQ NT AE LYS+ D+ ++
Sbjct: 208 ------SMEVLFGRDYIMEEVLGLKFKISPFSFFQTNTKGAEALYSIVRDFMGDAKSKVV 261
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
FD+ CGTGTIG AH VIGIE+ A A+ NA++NG+ NC F+ V+
Sbjct: 262 FDLYCGTGTIGQIAAHNAEKVIGIELIEEAAKAANENAKLNGLNNCEFLAGDVAKVI 318
>gi|347534735|ref|YP_004841405.1| RNA methyltransferase [Lactobacillus sanfranciscensis TMW 1.1304]
gi|345504791|gb|AEN99473.1| Uncharacterized RNA methyltransferase [Lactobacillus
sanfranciscensis TMW 1.1304]
Length = 458
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 94/369 (25%), Positives = 147/369 (39%), Gaps = 75/369 (20%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ PL H+SY QLE K++ IA+M KK + G+ P M+ R +P ++
Sbjct: 88 IAPLQHLSYDKQLEFKQHQIAEMFKKDHIDVEVNPTIGMEKP---MQYRNKAQIPVRM-- 142
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
+ + L G+ + +S P F + N P + K
Sbjct: 143 -INNRLETGFYRR------HSHDLIPIEDFYIQN--------------PEID----KAIV 177
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
+ ++ L++ ++ +N + G R + VR G E+M++
Sbjct: 178 VVRDVLRKYNIAAYNEVTHEGLIRNIMVRYGFYS------------------HEMMIVI- 218
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLS 543
VVN A+ P+L +L++ + G N D L
Sbjct: 219 ---------VVNGRDLPHAQEITHDIMEKIPNL--DSLMMNINTGKGNKLMGDKNFML-- 265
Query: 544 IPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDT 603
E N I D + +F ISP +F+QVN EKLY L + A L D
Sbjct: 266 --------EGKN-----YIMDQLMGTKFMISPLSFYQVNPFQTEKLYKLAIEKAKLTKDD 312
Query: 604 LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMG 663
++ D CG GTI L +A V V G+++ A+ DA NA++N I N FV KAE M
Sbjct: 313 IVIDAYCGIGTISLAMAPNVKHVYGVDVVKEAIEDARTNAKLNHIDNATFVVGKAEKQMK 372
Query: 664 SLLKDYLNP 672
+D + P
Sbjct: 373 QWAEDGIKP 381
>gi|323693629|ref|ZP_08107829.1| RNA methyltransferase [Clostridium symbiosum WAL-14673]
gi|323502320|gb|EGB18182.1| RNA methyltransferase [Clostridium symbiosum WAL-14673]
Length = 461
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 132/311 (42%), Gaps = 50/311 (16%)
Query: 360 KLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFM--LGNFREGVTAVEEPVDCPNVSEI 417
+ EGI GSPL + YRNK EFS G ++ P M G+F + VT E C V +
Sbjct: 111 EFEGIKGSPLADCYRNKMEFSFGDEVKDGPLALGMHKRGSFYDVVTTGE----CRIVHKD 166
Query: 418 ACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPL-DVENLEVNISEVNIS 476
C + + ++ ++ + + +++G+ R L VR G+ L D+ + +++ +
Sbjct: 167 FCDILLCTKAYFEEKEVGFYKKMQHTGYLRHLLVRRAVKTGEILLDL----ITTTQIGVE 222
Query: 477 EVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPAD 536
E K AG +LPL
Sbjct: 223 E------------------------EKELLAGWLERLLALPLEG-------------KMA 245
Query: 537 APLRLLSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
L + AD +E +V+ + + + L+F ISP +FFQ N+L AE LY
Sbjct: 246 GILHTKNDSLADAVKDEGTEVLYGKDYFFEELLGLKFRISPFSFFQTNSLGAEVLYEKTR 305
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
++ ++FD+ GTGTI LA V+G+E+ AV A NA +NG+ NC F+
Sbjct: 306 EYVGETKGKVVFDLYSGTGTIAQILAPVAEKVVGVEIVKEAVEAAKENARLNGLDNCEFI 365
Query: 655 CAKAEDVMGSL 665
V+ L
Sbjct: 366 AGDVLKVVDEL 376
>gi|423205265|ref|ZP_17191821.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aeromonas veronii
AMC34]
gi|404624348|gb|EKB21183.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aeromonas veronii
AMC34]
Length = 450
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 148/333 (44%), Gaps = 58/333 (17%)
Query: 337 ACPNGVSLPEWIMKS--REIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFM 394
A P + L + +++S ++G ++ ILG YRNK +++V A +GF
Sbjct: 86 AYPAQLKLKQALVQSALEQVGLGDTPVKDILGMESPFAYRNKAQYAV-RGCDAGAEIGFY 144
Query: 395 LGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREG 454
+ + +TA DC + + + + ++++ ++ ++ +SG R L R+G
Sbjct: 145 RKHSHDLITAD----DCAVQDPLHVELNARVRNWMREHNIAAYDEVNHSGCVRNLMTRKG 200
Query: 455 RSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSP 514
G E+ + V + E + F A A+
Sbjct: 201 FKSG--------ELMVVLVTLGEEL------------------------PFEAELLAALS 228
Query: 515 SLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVV--EARIHDSISNLRFC 572
LP+T LV + +N R+L +N V+ E I D I L F
Sbjct: 229 DLPVTTLVQNINDERTN--------RILG---------ATNRVLLGEGVIRDKIHELEFE 271
Query: 573 ISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMN 632
ISP +FFQ N + LYS ++A+L + +FD+ CG GTI L LA + V+GIE
Sbjct: 272 ISPLSFFQNNPTQTDVLYSSALEYAELTGNETVFDIYCGIGTISLFLAGKAAKVVGIESV 331
Query: 633 ASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
SA+SDA RNA +NGI++ F KAE +M L
Sbjct: 332 ESAISDARRNAALNGIEHTEFHVGKAEQLMPEL 364
>gi|291521671|emb|CBK79964.1| 23S rRNA m(5)U-1939 methyltransferase [Coprococcus catus GD/7]
Length = 458
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 86/357 (24%), Positives = 148/357 (41%), Gaps = 75/357 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
+ H+SY QL K+N + +L ++ + +++M I+G
Sbjct: 87 IQHLSYERQLAFKENKVRNLLSRVGH-----------IEDYVMHP------------IIG 123
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
YRNK +F VG + GF G+ V + + P V+E + I +
Sbjct: 124 MEHPYYYRNKAQFPVGLGKDGQIVTGFYAGHTHVIVDSAHCCIQAP-VNE---QLLVIVK 179
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
+++ D+ ++ + G R + R G E+M+ ++
Sbjct: 180 KWMTDHDIAPYDETTHKGLVRHILTRVG------------------FKTKEIMVCLIING 221
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLP-LTALVIQDHQGVSNVAPADAPLRLLSIP 545
+ E L +A +P +T++ +Q +NV + L
Sbjct: 222 KKLPHS------ESLVEALR--------EIPGMTSISFNINQDKTNVILGSKVVTLWG-- 265
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
+ I D I ++R+ ISP +F+QVN + EKLY +A+ GP+ ++
Sbjct: 266 -------------QDYITDYIGDVRYQISPLSFYQVNPVQTEKLYGAALKFANPGPNDVI 312
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
+D+ CG GTI L +A + V G+E+ A+ DA RNA IN I N F KAE+V+
Sbjct: 313 WDLYCGIGTISLFMAKKAKQVYGVEIVPQAIDDAKRNAAINDIHNAEFYVGKAEEVL 369
>gi|358062698|ref|ZP_09149339.1| hypothetical protein HMPREF9473_01401 [Clostridium hathewayi
WAL-18680]
gi|356699073|gb|EHI60592.1| hypothetical protein HMPREF9473_01401 [Clostridium hathewayi
WAL-18680]
Length = 569
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/310 (26%), Positives = 132/310 (42%), Gaps = 46/310 (14%)
Query: 360 KLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREG----VTAVEEPVDCPNVS 415
+ EGI SP+ GYRNK EFS G + P LG R G V VE C V
Sbjct: 111 EFEGIKASPVAEGYRNKMEFSFGDEYKDGP---LALGMHRRGSFHDVVTVE---GCRIVH 164
Query: 416 EIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNI 475
+ +E+ + ++ + + ++ G+ R L VR G+
Sbjct: 165 KDFTDILRATKEYFGELNVGFYKKLRHVGYLRHLLVRRAVKTGE---------------- 208
Query: 476 SEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPA 535
+L+A V+S + ++ E + + +A+ A ++ + +++V +
Sbjct: 209 ---ILVALVTSTQTE--LLPGEEDGILEAWKNRLLALELEGTFAGILHIKNDSLADVVQS 263
Query: 536 DAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGD 595
D + L + ++ + LRF ISP +FFQ N+L AE LY
Sbjct: 264 DETVVLYG---------------QEFFYEELLGLRFKISPFSFFQTNSLGAEVLYETARG 308
Query: 596 WADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVC 655
+ D ++FD+ GTGTI +A V+G+E+ A AV A NA +NG+ NC F+
Sbjct: 309 YVGDTKDKVVFDLYSGTGTIAQMIAPVAEKVVGVEIVAEAVEAARINAGLNGLNNCEFIA 368
Query: 656 AKAEDVMGSL 665
V+ L
Sbjct: 369 GDVLKVIDDL 378
>gi|325913301|ref|ZP_08175669.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
UPII 60-B]
gi|325477404|gb|EGC80548.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
UPII 60-B]
Length = 448
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 96/360 (26%), Positives = 150/360 (41%), Gaps = 78/360 (21%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ LAHM Y QLE KK + +L+K+ N K+
Sbjct: 79 LAALAHMKYERQLEFKKQQVVNLLEKVHLNK-------------------------KVND 113
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
L SP YRNK + V + + VGF FR+ + D +
Sbjct: 114 CLASPESTAYRNKAQVPVRM-VNGQLEVGF----FRKHSHDLVPMTDFLTTDKKIDAAVV 168
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
++ L++ ++P ++ K++G R L +R ++ G+ + ++L+
Sbjct: 169 AVRDILRKFNVPAYDEIKHNGEVRYLEIRRSKANGQLM----------------IVLVCL 212
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQ-GVSNVAPADAPLRLL 542
S DAVV + SL A VI +H +NV +
Sbjct: 213 HKSFNNLDAVVQA----------------IQSLDNVACVILNHNPHKTNVILGEKEY--- 253
Query: 543 SIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPD 602
I +GE I D I +L F IS +FFQ+N+L +LY+L A L +
Sbjct: 254 -ILAGNGE-----------IVDKIGDLSFKISSQSFFQINSLQTPRLYNLAIQKAQLTAN 301
Query: 603 TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
++ D G GTIGL++A V V+G+E+ AV DA +NA +NGI N + KAE++M
Sbjct: 302 DVVIDAYSGIGTIGLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGINNAEYFEGKAEELM 361
>gi|449903000|ref|ZP_21791853.1| putative RNA methyltransferase [Streptococcus mutans M230]
gi|449261735|gb|EMC59200.1| putative RNA methyltransferase [Streptococcus mutans M230]
Length = 451
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 94/378 (24%), Positives = 151/378 (39%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L V R + L H++Y QL K+ + L K+ G+S
Sbjct: 71 LTVDYLRTGIADLGHLTYGQQLNFKRKQVINSLSKIA---------GIS----------- 110
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
+ LG YRNK + V + + GF N + + + + +
Sbjct: 111 ---DIDVADTLGMDNPTAYRNKAQLPVR-RVNGQLETGFFRKNSHDLMPIEDYYIQDKEI 166
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+ + ++ L++ DL ++ + +G R L VR G G+ +
Sbjct: 167 DRLI----NFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYTGQIM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++ S F + E++ F P +IQ+ + A
Sbjct: 210 ----LVLVTTRSKIFR---IEQMIEKIISEF-----------PAVKSIIQNINDRNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
+ R L GE D +E D++ R+ IS +F+QVNT+ AEKLY
Sbjct: 252 FGSEFRTLY-----GE-----DTIE----DTMLGNRYIISAQSFYQVNTVMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D++DL PD + D G GTIGL+ A +V V G+E+ +AV DA +NA +N I N +V
Sbjct: 298 DFSDLTPDDTVIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
AE M S K + P
Sbjct: 358 ADSAEKAMASWSKRGIKP 375
>gi|363890176|ref|ZP_09317518.1| 23S rRNA (uracil-5-)-methyltransferase RumA, partial
[Eubacteriaceae bacterium CM5]
gi|361965904|gb|EHL18863.1| 23S rRNA (uracil-5-)-methyltransferase RumA, partial
[Eubacteriaceae bacterium CM5]
Length = 386
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 81/138 (58%), Gaps = 2/138 (1%)
Query: 531 NVAPADAPLRLLSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEK 588
N P + ++ ++ K + + N ++ R I D I NL F I P +F+QVN++ EK
Sbjct: 232 NKIPVKSIVQNVNTKKTNVILSDKNILLYGREYIQDMIENLTFNIYPNSFYQVNSIQMEK 291
Query: 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI 648
+Y D+A+L ++D+ CG GTI L L+ + V GIE+ A A+ A +NA+IN I
Sbjct: 292 MYKRALDYANLQGTETVYDLYCGIGTITLLLSQKCKTVYGIEVVAQAIESAKQNAKINNI 351
Query: 649 KNCRFVCAKAEDVMGSLL 666
+N +F+C K ED + +L+
Sbjct: 352 ENAKFICGKVEDEIENLV 369
>gi|389615133|dbj|BAM20557.1| RNA m5u methyltransferase, partial [Papilio polytes]
Length = 232
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 59/96 (61%)
Query: 571 FCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIE 630
F ISP A FQVNT AE LY D + D + D+CCGTGTIGL A G V+G+E
Sbjct: 1 FRISPEAXFQVNTAGAEILYXNAIDLSQTTNDXTVIDICCGTGTIGLCFAKHCGRVLGVE 60
Query: 631 MNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
+ A AV DA NAE+N NC F C +AED + S++
Sbjct: 61 LVAEAVRDARANAELNAADNCEFFCGRAEDALPSVM 96
>gi|371943803|gb|AEX61631.1| putative RNA methyltransferase [Megavirus courdo7]
Length = 379
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/311 (25%), Positives = 130/311 (41%), Gaps = 57/311 (18%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYA 422
I+ SP++N YRNK F VG+ ++ +G+ L + + V D ++
Sbjct: 36 SIISSPIINFYRNKLRFDVGFDIKGNIVIGYALPKKQSNIRYVFPADDMKHLHPRMKLII 95
Query: 423 SIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIA 482
Q +L + P ++ + N+ +T+R + + N +N E +I ++ +
Sbjct: 96 YWLQLYLNNNIKPWYSYYHNTSTLSSITIRTSFHTNDSIVIVN--INCEEYDIDDI--VN 151
Query: 483 QVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLL 542
+ F D F + K P T +I H
Sbjct: 152 YFTQMDFSDW---ENFNFVIK------------FPKTQHIIIGHD--------------- 181
Query: 543 SIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYS----LGGDWAD 598
IH+ + F IS +FFQVNTLA E LY+ L + +
Sbjct: 182 ------------------YIHEKLDQYTFKISHESFFQVNTLATEVLYNTIKLLAIKYFN 223
Query: 599 LGPDT-LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAK 657
D+ +L D+CCGTGTI LA V+GI++ +S++ DA+ N N I+N F+CA
Sbjct: 224 QCHDSNILLDLCCGTGTIATYLASTFTHVVGIDIKSSSIIDANENKHHNNIQNIDFICAP 283
Query: 658 AEDVMGSLLKD 668
E+V+ ++ D
Sbjct: 284 IENVLDQVIID 294
>gi|28212064|ref|NP_783008.1| tRNA (uracil-5-) -methyltransferase [Clostridium tetani E88]
gi|50401759|sp|Q891A0.1|Y2481_CLOTE RecName: Full=Uncharacterized RNA methyltransferase CTC_02481
gi|28204507|gb|AAO36945.1| tRNA (uracil-5-) -methyltransferase [Clostridium tetani E88]
Length = 460
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/360 (23%), Positives = 146/360 (40%), Gaps = 74/360 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L HMSY QL K+ + L +L GG+ ++E +LG
Sbjct: 88 LQHMSYKEQLNFKRQKVKDALLRL------------------------GGIDVEVEEVLG 123
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
YRNK + +G + K +GF + + + C E A K I +
Sbjct: 124 MENPYRYRNKVQLPIGKE-KGKVNIGF----YAPRSHNIIDLKSCFIQDEKADKIIKILK 178
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
E++++ ++ +++ ++ G R + VR G+ + ++L+ +
Sbjct: 179 EWIEKFNVSIYDEKEHKGNLRHIMVRTAFRTGQIM----------------IVLVTKDKK 222
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
+ ++N E L + +S +NV + L
Sbjct: 223 LPHKEELINKLTEDLEGVVSIIQNMNSQK--------------TNVVLGKESIVLWG--- 265
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
+ +I D I N +F I+P +FFQVN + E LY+ ++ADL D ++F
Sbjct: 266 ------------KDKIIDYIGNFKFAITPLSFFQVNPIQTEVLYNKALEYADLKGDEVVF 313
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
D CGTGTI L L+ + V G+E+ A+ A NA N + N F+ ++E ++ L+
Sbjct: 314 DAYCGTGTISLFLSQKAKKVYGVEIVNEAIESAKLNARENNVDNVDFIVGESEQIIPELI 373
>gi|403389595|ref|ZP_10931652.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. JC122]
Length = 451
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 133/301 (44%), Gaps = 47/301 (15%)
Query: 363 GILGSPLVNGYRNKCEFSVG-YSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKY 421
GI SP+V YRNK EF+ G + T+G + N + V+ +C V
Sbjct: 115 GIEESPVVFEYRNKMEFTFGDMEKGGELTLGMHVKNRNFSIITVD---NCKIVDNDFRTI 171
Query: 422 ASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLI 481
+ + ++LP + K+ GF R L VR+ + G+ L VN+
Sbjct: 172 LTTTLNHFKNTELPYYKVLKHEGFLRNLVVRKAINTGEIL-----------VNL------ 214
Query: 482 AQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRL 541
+ ++D L K F + + + + +++ + +S+V AD L
Sbjct: 215 VTTTQNSYD----------LTK-FVEELKSLNLNGKIVSIIHTLNDSLSDVVQADEIKVL 263
Query: 542 LSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGP 601
+ I + + L+F I+P AFFQ NT AEKLYS+ D+
Sbjct: 264 YG---------------KDYIVEDLLGLKFKINPFAFFQTNTKGAEKLYSMVRDFMGDSE 308
Query: 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661
+ ++FD+ CGTGTIG +A + V+GIE+ AV A NA++N + NC F+ V
Sbjct: 309 NKIVFDLYCGTGTIGQIVAPKAKKVLGIELIEEAVDAAKENAKLNNLDNCEFIAGDVAKV 368
Query: 662 M 662
+
Sbjct: 369 I 369
>gi|411012117|ref|ZP_11388446.1| RNA methyltransferase [Aeromonas aquariorum AAK1]
Length = 450
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 130/302 (43%), Gaps = 52/302 (17%)
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
ILG YRNK +++V +A +GF + + +TA DC + + +
Sbjct: 115 ILGMETPFAYRNKAQYAV-RGCEAGAEIGFYRKHSHDLITAD----DCAVQDSLHVELNA 169
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
+ ++++ D+ ++ ++G R L R+G G E+ + V + E +
Sbjct: 170 RVRNWMREYDIAAYDEVAHTGCVRNLMTRKGFKSG--------ELMVVLVTLGEEL---- 217
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLS 543
F A A+ LP+T LV ++ +N D LL
Sbjct: 218 --------------------PFEAELLAALQDLPVTTLVQNINEARTNRILGDNNRVLLG 257
Query: 544 IPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDT 603
I D I L F ISP +FFQ N + LYS ++ +L +
Sbjct: 258 ---------------SGVIRDKIHELEFEISPLSFFQNNPSQTDVLYSKALEYCELTGNE 302
Query: 604 LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMG 663
+FD+ CG GTI L LA + V+GIE SA+SDA RNA +NGI+ F KAE +M
Sbjct: 303 TVFDIYCGIGTISLFLAGKAAKVVGIESVESAISDARRNAALNGIEQTEFHVGKAEQLMP 362
Query: 664 SL 665
+L
Sbjct: 363 AL 364
>gi|404393662|ref|ZP_10985572.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacteriaceae
bacterium CM2]
gi|404278834|gb|EJZ44330.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacteriaceae
bacterium CM2]
Length = 544
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 67/105 (63%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I D I NL F I P +F+QVN++ EK+Y D+A+L ++D+ CG GTI L L+
Sbjct: 265 IQDMIENLTFNIYPNSFYQVNSIQMEKMYKRALDYANLQGTETVYDLYCGIGTITLLLSQ 324
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
+ V GIE+ A A+ A +NA+IN I+N +F+C K ED + +L+
Sbjct: 325 KCKTVYGIEVVAQAIESAKQNAKINNIENAKFICGKVEDEIENLV 369
>gi|225386438|ref|ZP_03756202.1| hypothetical protein CLOSTASPAR_00185 [Clostridium asparagiforme
DSM 15981]
gi|225047456|gb|EEG57702.1| hypothetical protein CLOSTASPAR_00185 [Clostridium asparagiforme
DSM 15981]
Length = 506
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 98/366 (26%), Positives = 154/366 (42%), Gaps = 65/366 (17%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKL--TRNAR---KACPN---GVSLPEWIMKSREIGGLP 358
L M Y QL K+ I LK++ N R + C + G E ++ G
Sbjct: 101 LQMMDYEAQLRFKERKIYNNLKRIGGMENLRLPGEECGSEDEGAGTGE---RAGADGRKI 157
Query: 359 CKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIA 418
++E I+G YRNK +F G S + GF G ++ E DC E
Sbjct: 158 VRMEPIMGMEEPWRYRNKAQFPFGMSKDGRVITGFYAGR----THSIIENEDCLLGVEEN 213
Query: 419 CKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEV 478
+ I +EF+++ + ++ + G R +R+G + G+ + L VN ++ EV
Sbjct: 214 REILRIVREFMEEFGVKPYDEEGHRGLVRHCLIRKGFATGEIMVC--LVVNGRKLPKDEV 271
Query: 479 ML--IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPAD 536
++ + QV T VN+E +NV D
Sbjct: 272 LVERLRQVDGMTSISLCVNTE-------------------------------KTNVILGD 300
Query: 537 APLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDW 596
+ L I D I ++++ ISP +F+QVN KLY ++
Sbjct: 301 EVVNLWG---------------PGYITDYIGDVKYQISPLSFYQVNPAQTVKLYGTALEY 345
Query: 597 ADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCA 656
A L + ++D+ CG GTI L LA + V G+E+ A+ DA RNA+INGI+N F
Sbjct: 346 AGLTGEETVWDLYCGIGTISLFLAQKAKKVYGVEIVPQAIEDARRNAKINGIENVEFFVG 405
Query: 657 KAEDVM 662
KAE+V+
Sbjct: 406 KAEEVL 411
>gi|172058513|ref|YP_001814973.1| RNA methyltransferase [Exiguobacterium sibiricum 255-15]
gi|171991034|gb|ACB61956.1| RNA methyltransferase, TrmA family [Exiguobacterium sibiricum
255-15]
Length = 454
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 74/131 (56%), Gaps = 9/131 (6%)
Query: 551 PEESNDVVEAR---------IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGP 601
P+E+N ++ R I D I+ L + ISP +FFQVN L EKLY ++A L
Sbjct: 246 PDETNVILGKRNIVLHGPSVIRDQIAGLTYEISPHSFFQVNPLQTEKLYGKALEYAQLTG 305
Query: 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661
D ++ D CG G+I L+LA + V GIEM A+ DA RNA+ NGI N F AE V
Sbjct: 306 DEIVVDAYCGIGSISLSLAQKAKHVYGIEMVPQAIDDARRNAKANGIDNVSFEYGTAETV 365
Query: 662 MGSLLKDYLNP 672
M +L+K + P
Sbjct: 366 MPALVKGGIKP 376
>gi|333896487|ref|YP_004470361.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333111752|gb|AEF16689.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 453
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 95/371 (25%), Positives = 153/371 (41%), Gaps = 84/371 (22%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H++YS QLE KK+ + + LK++ + I+ IG +
Sbjct: 85 LQHLTYSGQLEFKKHVVGESLKRIGKID-------------IVVFDTIG---------MA 122
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
PL YR+K E+ + K GF E V ++ C S ++
Sbjct: 123 DPL--HYRDKAEYPLSIK-NGKIEGGFYASKSHE-VVGIDS---CMIQSSVSVNAMKTVV 175
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
E+ + V+++ GF R + + G + EVM+I
Sbjct: 176 EWANDYKITVYDKKTGKGFLRHVITKVGFAT------------------KEVMVII---- 213
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQG-VSNVAPADAPLRLLSIP 545
A+S +P ++ +G + N+ +L++
Sbjct: 214 -----------------------VANSRDIPHKKELVSRLKGKIENLKSV-----VLNVN 245
Query: 546 KADGEPEESNDVV----EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGP 601
+++G+ N+ + + I D I + +F ISP +FFQVN + + LY ++ADL
Sbjct: 246 RSNGKQVMGNENIVIYGDDYITDFIGDKKFEISPLSFFQVNPVQTKVLYEKALEYADLKG 305
Query: 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661
D ++FDV CG GTI + A V GIE+ AV DA +NA ING+ N F+ KAED+
Sbjct: 306 DEIVFDVYCGIGTISIFFAKHARKVYGIEVIPDAVEDARQNAAINGVNNAEFIAGKAEDI 365
Query: 662 MGSLLKDYLNP 672
M L L P
Sbjct: 366 MIELCNKGLKP 376
>gi|421770570|ref|ZP_16207263.1| RNA methyltransferase TrmA family [Lactobacillus rhamnosus LRHMDP2]
gi|421773491|ref|ZP_16210135.1| RNA methyltransferase, TrmA family [Lactobacillus rhamnosus
LRHMDP3]
gi|411181827|gb|EKS48988.1| RNA methyltransferase TrmA family [Lactobacillus rhamnosus LRHMDP2]
gi|411181957|gb|EKS49115.1| RNA methyltransferase, TrmA family [Lactobacillus rhamnosus
LRHMDP3]
Length = 455
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 111/434 (25%), Positives = 176/434 (40%), Gaps = 115/434 (26%)
Query: 263 AVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLKVKSAR-DVVTP------------LAH 309
A+PGE+ A ++ +D L + K++SA D VTP L H
Sbjct: 38 ALPGEVVVAEVTAI-------HDRYL--EAKTHKIRSASPDRVTPKEPLFGQIGGVELNH 88
Query: 310 MSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPL 369
++Y QL K++ +AQ L K + +G L+ +G
Sbjct: 89 LAYPAQLRFKRDVVAQALAKF---------------------KPLGWQHYDLKPTIGMTH 127
Query: 370 VNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCP-----NVSEIACKYASI 424
YRNK +F V + G+ R G+ A P + + K +
Sbjct: 128 PTHYRNKAQFPVRE----------IDGHVRAGLYAPGSHRLIPLTHFLTQAPLTMKVVTT 177
Query: 425 FQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQV 484
+ L+ +P++N K++G + L VRE S G+ QV
Sbjct: 178 LCQLLEDLQIPIYNEKKHAGIVKTLVVRESFSTGQ----------------------VQV 215
Query: 485 SSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL----- 539
+ T NS +L K A TA + LP+ + Q N+ P + L
Sbjct: 216 TFIT------NSA--KLPKQ-AQLITAIAAQLPMVISIAQ------NINPGNTSLIWGKD 260
Query: 540 -RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWAD 598
RLL+ G+P I +++S F +SP AF Q+N E+LY++ D
Sbjct: 261 SRLLA-----GQPY---------IQETLSGRTFQLSPQAFLQLNPKQTEQLYAIAKDALQ 306
Query: 599 LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658
L PD L D CG GT+G++LA+R + G++ A++DA NA+ N N + KA
Sbjct: 307 LAPDDTLIDAYCGIGTVGMSLANRHQSIYGMDTIPEAIADAKANAKNNVFNNTHYFVGKA 366
Query: 659 EDVMGSLLKDYLNP 672
E + LK+ ++P
Sbjct: 367 ETLFPKWLKEGIHP 380
>gi|410495134|ref|YP_006904980.1| hypothetical protein SDSE_1428 [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
gi|410440294|emb|CCI62922.1| K00599 [Streptococcus dysgalactiae subsp. equisimilis AC-2713]
Length = 451
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 101/416 (24%), Positives = 167/416 (40%), Gaps = 77/416 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLA----GDGSGLKVKSARDVVTPLAHMSYSVQL 316
++A+PGE+ + G G E + V R + H++Y QL
Sbjct: 33 DNALPGEIIDMRVLKVNKNSGFGKVEAYQKLSPARNQAIDVTYLRTGIADFGHLAYEDQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K+ + L K+ A N V++ ++ IG + +PL YRNK
Sbjct: 93 RFKQKQVQDNLYKI------AGINDVTV------NQTIG---------MDNPL--AYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF + + V + + + + + +E L++ D+
Sbjct: 130 AQVPVR-RVNGQLETGFFRKHSHDLVPISDYYIQDKEIDRLI----NFTRELLRRFDVKP 184
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
++ + +G R + VR G G+ + ++L+ S D V++
Sbjct: 185 YDEKEQTGLIRHIVVRRGHYSGEMM----------------LVLVTTRSKVFRVDQVISK 228
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESND 556
E S P +IQ+ + A D + L G+
Sbjct: 229 IVE---------------SFPAVVSIIQNINDKNTNAIFDKDFKTLY-----GKDT---- 264
Query: 557 VVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIG 616
I DS+ F IS +F+QVNT+ AEKLY ++DL D ++ D G GTIG
Sbjct: 265 -----ITDSMLGNDFAISAQSFYQVNTVMAEKLYQTAIAFSDLSEDDVVIDAYSGIGTIG 319
Query: 617 LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
L+ A V V G+E+ +AV DA +NA NGI N FV AE+ M + K+ + P
Sbjct: 320 LSFAKTVKAVYGVEVIEAAVKDAQQNAARNGITNVHFVADTAENAMATWAKEGIKP 375
>gi|449882791|ref|ZP_21784801.1| putative RNA methyltransferase [Streptococcus mutans SA38]
gi|449926485|ref|ZP_21800785.1| putative RNA methyltransferase [Streptococcus mutans 4SM1]
gi|449160637|gb|EMB63889.1| putative RNA methyltransferase [Streptococcus mutans 4SM1]
gi|449250436|gb|EMC48495.1| putative RNA methyltransferase [Streptococcus mutans SA38]
Length = 451
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 94/378 (24%), Positives = 151/378 (39%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L V R + L H++Y QL K+ + L K+ G+S
Sbjct: 71 LTVDYLRTGIADLGHLTYGQQLNFKRKQVINSLSKIA---------GIS----------- 110
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
+ LG YRNK + V + + GF N + + + + +
Sbjct: 111 ---DIDVADTLGMDNPTAYRNKAQVPVR-RVNGQLETGFFRKNSHDLMPIEDYYIQDKEI 166
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+ + ++ L++ DL ++ + +G R L VR G G+ +
Sbjct: 167 DRLI----NFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYTGQIM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++ S F + E++ F P +IQ+ + A
Sbjct: 210 ----LVLVTTRSKIFR---IEQMIEKIISEF-----------PAVKSIIQNINDRNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
+ R L GE D +E D++ R+ IS +F+QVNT+ AEKLY
Sbjct: 252 FGSEFRTLY-----GE-----DTIE----DTMLGNRYIISAQSFYQVNTVMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D++DL PD + D G GTIGL+ A +V V G+E+ +AV DA +NA +N I N +V
Sbjct: 298 DFSDLAPDDTVIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
AE M S K + P
Sbjct: 358 SDSAEKAMASWSKRGIKP 375
>gi|312870826|ref|ZP_07730932.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
LEAF 3008A-a]
gi|312873060|ref|ZP_07733119.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
LEAF 2062A-h1]
gi|311091293|gb|EFQ49678.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
LEAF 2062A-h1]
gi|311093702|gb|EFQ52040.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
LEAF 3008A-a]
Length = 450
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 95/360 (26%), Positives = 149/360 (41%), Gaps = 78/360 (21%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ LAHM Y QLE KK + +L+K+ N K+
Sbjct: 79 LAALAHMKYERQLEFKKQQVVNLLEKVHLNK-------------------------KVND 113
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
L SP YRNK + V + + VGF FR+ + D +
Sbjct: 114 CLASPESTAYRNKAQVPVRM-VNGQLEVGF----FRKHSHDLVPMTDFLTTDKKIDAAVV 168
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
++ L++ ++P ++ K++G R L +R ++ G+ + ++L+
Sbjct: 169 AVRDILRKFNVPAYDEIKHNGEVRYLEIRRSKANGQLM----------------IVLVCL 212
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQ-GVSNVAPADAPLRLL 542
S D VV + SL A VI +H +NV +
Sbjct: 213 HKSFNNLDTVVQA----------------IQSLDNVACVILNHNPHKTNVILGEKEY--- 253
Query: 543 SIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPD 602
I +GE I D I +L F IS +FFQ+N+L +LY+L A L D
Sbjct: 254 -ILAGNGE-----------IVDKIGDLSFKISSQSFFQINSLQTPRLYNLAIQKAQLTAD 301
Query: 603 TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
++ D G GTIGL++A V V+G+E+ AV DA +NA +NG+ N + KAE++M
Sbjct: 302 DVVIDAYSGIGTIGLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGVNNAEYFEGKAEELM 361
>gi|302672182|ref|YP_003832142.1| 23S rRNA methyltransferase [Butyrivibrio proteoclasticus B316]
gi|302396655|gb|ADL35560.1| 23S rRNA methyltransferase [Butyrivibrio proteoclasticus B316]
Length = 496
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 148/327 (45%), Gaps = 45/327 (13%)
Query: 361 LEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPV-DCPNVSEIAC 419
+E I+G YRNK +F +G K G ++ F G T PV DC +
Sbjct: 119 MEPIIGMDEPWRYRNKAQFPIG-----KDKNGRIIAGFYAGRTHSIIPVTDCLIGTAENK 173
Query: 420 KYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVM 479
S+ ++++++ ++ G R + +R+G + G+ + V
Sbjct: 174 DILSVIISHMEKNNIEPYDETSGKGLMRHVLIRKGFTSGQIM----------------VC 217
Query: 480 LIAQVSSATFDD--AVVNSEFERLAKAFAAG----ATASSPSLPLTALVIQDHQGVSNVA 533
L+ + + A +N++ E A + +G T S +T++ + + +NV
Sbjct: 218 LVLNYKGISKNKKFAGINADGENTAIEYISGQKELVTRLSQIKGMTSISVSINTDKTNV- 276
Query: 534 PADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLG 593
I + ND I D++ L F ISP +F+QVN + EKLY
Sbjct: 277 ----------IMGTEIHTIWGNDT----ISDTLCGLEFDISPLSFYQVNPVQCEKLYGQA 322
Query: 594 GDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRF 653
++A L + ++D+ CG GTI L++A + G V G+E+ A+ DA +NA NG+ N F
Sbjct: 323 IEYAGLTGEETVWDLYCGIGTITLSMAKKAGHVYGVEIIPDAIEDAKKNALRNGLTNADF 382
Query: 654 VCAKAEDVMGSLLKDYLNPLREEDEHA 680
C KAE+V+ + L E+D+HA
Sbjct: 383 FCGKAEEVLPDFYAN--GRLEEKDKHA 407
>gi|309803859|ref|ZP_07697944.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
LactinV 11V1-d]
gi|308164093|gb|EFO66355.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
LactinV 11V1-d]
Length = 450
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 95/360 (26%), Positives = 149/360 (41%), Gaps = 78/360 (21%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ LAHM Y QLE KK + +L+K+ N K+
Sbjct: 79 LAALAHMKYERQLEFKKQQVVNLLEKVHLNK-------------------------KVND 113
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
L SP YRNK + V + + VGF FR+ + D +
Sbjct: 114 CLASPESTAYRNKAQVPVRM-VNGQLEVGF----FRKHSHDLVPMTDFLTTDKKIDAAVV 168
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
++ L++ ++P ++ K++G R L +R ++ G+ + ++L+
Sbjct: 169 AVRDILRKFNVPAYDEIKHNGEVRYLEIRRSKANGQLM----------------IVLVCL 212
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQ-GVSNVAPADAPLRLL 542
S D VV + SL A VI +H +NV +
Sbjct: 213 HKSFNNLDTVVQA----------------IQSLDNVACVILNHNPHKTNVILGEKEY--- 253
Query: 543 SIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPD 602
I +GE I D I +L F IS +FFQ+N+L +LY+L A L D
Sbjct: 254 -ILAGNGE-----------IVDKIGDLSFKISSQSFFQINSLQTPRLYNLAIQKAQLTAD 301
Query: 603 TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
++ D G GTIGL++A V V+G+E+ AV DA +NA +NG+ N + KAE++M
Sbjct: 302 DVVIDAYSGIGTIGLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGVNNAEYFEGKAEELM 361
>gi|332983359|ref|YP_004464800.1| 23S rRNA m(5)U-1939 methyltransferase [Mahella australiensis 50-1
BON]
gi|332701037|gb|AEE97978.1| 23S rRNA m(5)U-1939 methyltransferase [Mahella australiensis 50-1
BON]
Length = 456
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 126/296 (42%), Gaps = 50/296 (16%)
Query: 373 YRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQS 432
YRNK + VG +P +GF + V P+ P V + A K ++++
Sbjct: 129 YRNKAQLPVG-VFSGRPVMGFFAAGTHDIVDIDTCPIQHPAV-DAAIKAV---KDYVSSY 183
Query: 433 DLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDA 492
++ V++ G R + VR G + G +VM++
Sbjct: 184 NVAVYDEMTGKGLLRHIMVRVGFNSG------------------QVMVVP---------- 215
Query: 493 VVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPE 552
V+N + AK F T ++ Q+ G+++V R I + +
Sbjct: 216 VINGDSIPHAKEF-------------TDMLRQNIDGLASVVLNINRRRTNVILGSQCKVI 262
Query: 553 ESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGT 612
ND I D++ L F ISP +FFQVN E LY+ ++A L + D CG
Sbjct: 263 YGND----HIMDTLCGLTFKISPLSFFQVNPRQTEVLYTKAIEYAGLDGTQTVLDAYCGI 318
Query: 613 GTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
GTI L A + + GIE AV DA NA +N I N F+CAKAED +G ++D
Sbjct: 319 GTISLIAAQKAAKIYGIEEIQQAVDDARENARLNDISNVEFICAKAEDAIGRFIED 374
>gi|450081553|ref|ZP_21851793.1| putative RNA methyltransferase [Streptococcus mutans N66]
gi|449215137|gb|EMC15352.1| putative RNA methyltransferase [Streptococcus mutans N66]
Length = 451
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 95/372 (25%), Positives = 151/372 (40%), Gaps = 73/372 (19%)
Query: 301 RDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCK 360
R + L H++Y QL K+ + L K+ G+S +
Sbjct: 77 RTGIADLGHLTYGQQLNFKRKQVINSLSKIA---------GIS--------------DIE 113
Query: 361 LEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
+ LG YRNK + V + + GF FR+ A+ D + +
Sbjct: 114 VADTLGMDNPTAYRNKAQVPVR-RVNGQLETGF----FRKNSHALMPIEDYYIQDKEIDR 168
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
+ ++ L++ DL ++ + +G R L VR G G+ + ++
Sbjct: 169 LINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYTGQIM-----------------LV 211
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
+ S F + E++ F P +IQ+ + A + R
Sbjct: 212 LVTTRSKIFR---IEQMIEKIISEF-----------PAVKSIIQNINDRNTNAIFGSEFR 257
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
L GE D +E D++ R+ IS +F+QVNT+ AEKLY D++DL
Sbjct: 258 TLY-----GE-----DTIE----DTMLGNRYIISAQSFYQVNTVMAEKLYQTAIDFSDLT 303
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
PD + D G GTIGL+ A +V V G+E+ +AV DA +NA +N I N +V AE
Sbjct: 304 PDDTVIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYVADSAEK 363
Query: 661 VMGSLLKDYLNP 672
M S K + P
Sbjct: 364 AMASWSKRGIKP 375
>gi|255528224|ref|ZP_05395044.1| RNA methyltransferase, TrmA family [Clostridium carboxidivorans P7]
gi|296188118|ref|ZP_06856510.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
carboxidivorans P7]
gi|255508074|gb|EET84494.1| RNA methyltransferase, TrmA family [Clostridium carboxidivorans P7]
gi|296047244|gb|EFG86686.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
carboxidivorans P7]
Length = 450
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 80/304 (26%), Positives = 137/304 (45%), Gaps = 47/304 (15%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQA-KPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKY 421
GI SP YRNK EF+ G + + T+G + G+ V+ +C V E K
Sbjct: 114 GIETSPEEFEYRNKMEFTFGDEEKGGELTLGMHIKGKSFGIVNVD---NCKIVDEDFRKI 170
Query: 422 ASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLI 481
+ +++ LP + K G+ R L +R+G++ G E+ ++ V S++
Sbjct: 171 LDFTVNYFRKNPLPYYRVMKREGYLRNLVIRKGKNTG--------EILVNLVTTSQI--- 219
Query: 482 AQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRL 541
+ F ++++N + AG L ++ + S+V AD L
Sbjct: 220 -DFNLEEFKESLLNLSY--------AGE--------LKGILHTINDSFSDVVQADEIKVL 262
Query: 542 LSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGP 601
I + + L+F I+P +FFQ N+ AEKLYS+ ++
Sbjct: 263 YG---------------RDYIIEELMGLKFKIAPESFFQTNSKGAEKLYSIVKEFLGDAS 307
Query: 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661
++FD+ CGTGTIG +A V+GIE+ AV A+ N+++NG+ NC F+ V
Sbjct: 308 SKVVFDLYCGTGTIGQIVAPNAKKVLGIELIEEAVKAANENSKLNGLNNCEFIAGDVAKV 367
Query: 662 MGSL 665
+ ++
Sbjct: 368 IKTV 371
>gi|312867756|ref|ZP_07727962.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
parasanguinis F0405]
gi|311096819|gb|EFQ55057.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
parasanguinis F0405]
Length = 452
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 109/417 (26%), Positives = 167/417 (40%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDG----SGLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGE+ + G G E L + R + L H++Y QL
Sbjct: 33 ENALPGEVIRMRVLKVNKKIGYGKVEEYLEKSPHRNEELDLAYLRSGIADLGHLAYPEQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K + L K+ G+S E +P L + P+ YRNK
Sbjct: 93 KFKAKQVKDSLYKMA---------GISDIE----------VPLTLG--MDHPV--QYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + + + + P + ++ + + F DL
Sbjct: 130 AQVPVR-RVNGQVETGFFRKNSHDLMPIEDFYIQDPVIDQVILALRDLIRRF----DLKP 184
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS-ATFDDAVVN 495
++ + SG R L VR G G E+M+I + F V+
Sbjct: 185 YDEKEQSGLIRNLVVRRGHHSG------------------EIMVILVTTRPKVFR---VD 223
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
E+L K F P V+Q+ + A R+L G+
Sbjct: 224 QLIEQLIKQF-----------PAIKSVMQNINDQNTNAIFGKEWRVLY-----GQD---- 263
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
I D + F IS AF+QVNT AEKLY D+A+L D ++ D G GTI
Sbjct: 264 -----YITDQMLGNSFQISGPAFYQVNTEMAEKLYQTAIDFAELKEDDVVIDAYSGIGTI 318
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL++A V V G+E+ AV ++ +NA INGI N +VC AE+ M + LK+ + P
Sbjct: 319 GLSVAKHVKEVYGVEVIPEAVENSQKNASINGITNAHYVCDTAENAMKNWLKEGIQP 375
>gi|371944974|gb|AEX62795.1| putative RNA methyltransferase [Moumouvirus Monve]
Length = 378
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 76/119 (63%), Gaps = 8/119 (6%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLY----SLGGDWADLGPDTLLFDVCCGTGTIGL 617
I++ + N F ISP +FFQVNT A E LY L + + + +LFD+CCGTGTIG
Sbjct: 183 IYEKLDNYIFKISPESFFQVNTYATEVLYGTIKQLVVKYFNKCDNNILFDLCCGTGTIGT 242
Query: 618 TLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD----YLNP 672
+A+ VIGI++ +S+++DA N +IN IKN F+CA E+++ +++ D Y+NP
Sbjct: 243 YVANIFTQVIGIDIKSSSINDAIFNQKINNIKNSHFICAPIENILDNIIDDMINKYINP 301
>gi|258508829|ref|YP_003171580.1| RNA methyltransferase [Lactobacillus rhamnosus GG]
gi|385828488|ref|YP_005866260.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus GG]
gi|257148756|emb|CAR87729.1| RNA methyltransferase [Lactobacillus rhamnosus GG]
gi|259650133|dbj|BAI42295.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus GG]
Length = 455
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 111/434 (25%), Positives = 174/434 (40%), Gaps = 115/434 (26%)
Query: 263 AVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLKVKSAR-DVVTP------------LAH 309
A+PGE+ A ++ +D L + K++SA D VTP L H
Sbjct: 38 ALPGEVVVAEVTAI-------HDRYL--EAKTHKIRSASPDRVTPTEPLFGQIGGVELNH 88
Query: 310 MSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPL 369
++Y QL K++ +AQ L K + +G L+ G
Sbjct: 89 LAYPAQLRFKRDVVAQALAKF---------------------KPLGWQHYDLKPTSGMTH 127
Query: 370 VNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCP-----NVSEIACKYASI 424
YRNK +F V + G+ R G+ A P + + K +
Sbjct: 128 PTHYRNKAQFPVRE----------IDGHVRAGLYAPGSHRLIPLTHFLTQAPLTMKVVTT 177
Query: 425 FQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQV 484
+ L+ +P++N K++G + L VRE S G+ QV
Sbjct: 178 LCQLLEDLQIPIYNEKKHAGIVKTLVVRESFSTGQ----------------------VQV 215
Query: 485 SSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL----- 539
+ T NS +L K A T + LP+ + Q N+ P + L
Sbjct: 216 TFIT------NSA--KLPKQ-AQLITTIAAQLPMVVSIAQ------NINPGNTSLIWGKD 260
Query: 540 -RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWAD 598
RLL+ G+P I +++S F +SP AF Q+N E+LY++ D
Sbjct: 261 SRLLA-----GQPY---------IQETLSGRTFQLSPQAFLQLNPKQTEQLYAIAKDALQ 306
Query: 599 LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658
L PD L D CG GT+G++LA+R + G++ A++DA NA+ NG N + KA
Sbjct: 307 LAPDDTLIDAYCGIGTVGMSLANRHQSIYGMDTIPEAIADAKANAKNNGFNNTHYFVGKA 366
Query: 659 EDVMGSLLKDYLNP 672
E + LK+ + P
Sbjct: 367 ETLFPKWLKEGIRP 380
>gi|260887170|ref|ZP_05898433.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sputigena
ATCC 35185]
gi|260863232|gb|EEX77732.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sputigena
ATCC 35185]
Length = 466
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 98/367 (26%), Positives = 150/367 (40%), Gaps = 76/367 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLP-CKLEGIL 365
L H+SY QL K+ + +++ IGGL ++ +L
Sbjct: 96 LQHLSYGGQLHWKRQQVVDAVER------------------------IGGLSGIEVLPVL 131
Query: 366 GSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF 425
G+ YRNK +F VG K ++G F +G + + DC + ++
Sbjct: 132 GAKEPWLYRNKMQFPVG-----KKRGKTVIGCFAKGSHDIIDTRDCRIQKDGNNTIVNVM 186
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
+E +++ +PV++ +++G R + R G EN E M++ +
Sbjct: 187 REIVERLHIPVYDEDRHTGVLRHIVGRIG---------EN----------GEAMVVLVTA 227
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
+ A E RL + +P V Q+ Q N +LL
Sbjct: 228 TKDLPKA---KEITRLLRE----------RVPNLKSVQQNIQTYRNNVILGRETKLLW-- 272
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
G+P I D I LRF IS +FFQVNT A LY ++ADL +
Sbjct: 273 ---GKPT---------IPDRIGRLRFSISARSFFQVNTEQAAVLYEKALEYADLSGKETV 320
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
D CGTGTI L LA + V GIE+ A+ DA +NA N IKN F+ A ++M L
Sbjct: 321 IDAYCGTGTITLFLAQKAHRVYGIEIVKPAIEDAKKNARDNHIKNAAFLVGDATELMPRL 380
Query: 666 LKDYLNP 672
+ + P
Sbjct: 381 CHENIRP 387
>gi|339301899|ref|ZP_08650978.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus agalactiae
ATCC 13813]
gi|319744646|gb|EFV96993.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus agalactiae
ATCC 13813]
Length = 468
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 104/416 (25%), Positives = 165/416 (39%), Gaps = 77/416 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGN-DEGLAGD---GSGLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGE+ + G G +E L GL R + L H++Y QL
Sbjct: 48 ENALPGEIIKMRVLKLRKRIGYGKVEEYLTTSPHRNEGLDYTYLRTGIADLGHLTYEQQL 107
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K+ +A L K+ + +E LG + YRNK
Sbjct: 108 LFKQKQVADNLYKIAHIS-----------------------DVLVEPTLGMTIPLAYRNK 144
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N V+ + + + + + ++ L++ D+
Sbjct: 145 AQVPVR-RVDGQLETGFFRKNSHTLVSIEDYLIQEKEIDALI----NFTRDLLRKFDVKP 199
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
++ + SG R L VR G G+ + +++ F ++
Sbjct: 200 YDEEQQSGLIRNLVVRRGHYTGQLM-----------------LVLVTTRPKIFR---IDQ 239
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESND 556
E+L AF PS+ I D SNV I + +D
Sbjct: 240 MIEKLVSAF--------PSVVSIMQNINDRN--SNV-----------IFGKEFRTLYGSD 278
Query: 557 VVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIG 616
+E D + + IS +F+QVNT AEKLY D++DL + ++ D G GTIG
Sbjct: 279 TIE----DQMLGNTYAISAQSFYQVNTEMAEKLYQKAIDFSDLNSEDIVIDAYSGIGTIG 334
Query: 617 LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
L++A +V V G+E+ AVSDA NA NGI N +V AE+ M LK+ + P
Sbjct: 335 LSVAKQVKHVYGVEVVEKAVSDAKENATRNGITNSTYVADSAENAMAKWLKEGIKP 390
>gi|334703208|ref|ZP_08519074.1| RNA methyltransferase [Aeromonas caviae Ae398]
Length = 450
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 92/334 (27%), Positives = 145/334 (43%), Gaps = 54/334 (16%)
Query: 337 ACPNGVSLPEWIMKS--REIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFM 394
A P ++L + +++S ++G + ILG YRNK +++V S +A +GF
Sbjct: 86 AYPAQLALKQSLVQSALEQVGLGEAVVNPILGMETPFAYRNKAQYAVRGS-EAGAEIGFY 144
Query: 395 LGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREG 454
+ + +TA DC + + + + ++++ D+ ++ ++G R L R+G
Sbjct: 145 RKHSHDLITAD----DCAVQDSLHVELNARVRNWMREHDIAAYDEVAHTGCVRNLMTRKG 200
Query: 455 RSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSP 514
G E+ + V + E A F A A+
Sbjct: 201 FKSG--------ELMVVLVTLGE------------------------ALPFEAELLAALA 228
Query: 515 SLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCIS 574
LP+T LV ++ +N D LL I D I L F IS
Sbjct: 229 DLPVTTLVQNINEARTNRILGDKNRVLLG---------------SGVIRDKIHELEFEIS 273
Query: 575 PTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNAS 634
P +FFQ N + LYS ++ +L +FD+ CG GTI L LA + V+GIE S
Sbjct: 274 PLSFFQNNPSQTDVLYSKALEYCELTGSETVFDIYCGIGTISLFLAGKAAKVVGIESVES 333
Query: 635 AVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
A+SDA RNA +NGI+ F KAE +M +L D
Sbjct: 334 AISDARRNAALNGIEQTEFHVGKAEQLMPALYAD 367
>gi|148380817|ref|YP_001255358.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A str. ATCC 3502]
gi|148290301|emb|CAL84425.1| putative RNA methyltransferase [Clostridium botulinum A str. ATCC
3502]
Length = 456
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 87/316 (27%), Positives = 135/316 (42%), Gaps = 49/316 (15%)
Query: 348 IMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVG-YSLQAKPTVGFMLGNFREGVTAVE 406
+ KS+EI G G+ SP YRNK EF+ G T+G + N + V+
Sbjct: 106 LFKSKEIKGFD--FLGVEKSPEEYEYRNKMEFTFGDMEKGGDLTLGMHVKNRNFSIVTVD 163
Query: 407 EPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENL 466
+C V + + + LP + + GF R L +R+ ++ G+ L
Sbjct: 164 ---NCEIVDRDFRNILTTVVNYFNEKRLPKYRVMSHEGFLRNLVIRKAKNTGEIL----- 215
Query: 467 EVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDH 526
VNI S FD + + L K G + ++ +
Sbjct: 216 ------VNI------VTTSQMEFDFKEI---VDMLLKVECKGE--------IKGILHTIN 252
Query: 527 QGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAA 586
+S+V D L +L D I + + L+F I+P AFFQ N+ A
Sbjct: 253 DTLSDVVQVDK-LEILY----------GRD----YIIEELLGLKFKIAPEAFFQTNSKGA 297
Query: 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN 646
EKLYS+ D+ ++FD+ CGTGTIG +A + VIG+E+ AV A+ NA++N
Sbjct: 298 EKLYSIVKDFLGDASSKVVFDLYCGTGTIGQIVAPKAKKVIGVELIEEAVKAANENAKLN 357
Query: 647 GIKNCRFVCAKAEDVM 662
G+ NC F+ V+
Sbjct: 358 GLNNCEFIAGDVAKVI 373
>gi|414157419|ref|ZP_11413719.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
F0442]
gi|410868735|gb|EKS16700.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
F0442]
Length = 451
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 106/416 (25%), Positives = 168/416 (40%), Gaps = 77/416 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDG----SGLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGE+ + G G E L + R + L H++Y QL
Sbjct: 33 ENALPGEIIRMRVLKVNKKIGYGKVEEYLEKSPHRNEELDLAYLRSGIADLGHLAYPEQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K + L K+ G++ E +P L + P+ YRNK
Sbjct: 93 KFKAKQVKDSLYKMA---------GITDIE----------VPLTLG--MDHPV--QYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + + + + P + ++ +E +++ DL
Sbjct: 130 AQVPVR-RVNGQVETGFFRKNSHDLMPIEDFYIQDPVIDQVVLA----LRELIRRFDLKP 184
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
++ + SG R L VR G G E+M+I + V+
Sbjct: 185 YDEKEQSGLIRNLVVRRGHHSG------------------EIMVILVTTRPKIFR--VDQ 224
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESND 556
++L K F P V+Q+ + A R+L G+
Sbjct: 225 LIDQLIKQF-----------PEIVSVMQNINDQNTNAIFGKEWRVLY-----GQD----- 263
Query: 557 VVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIG 616
I D + F IS AF+QVNT AEKLY D+A+L D ++ D G GTIG
Sbjct: 264 ----YITDQMMGNSFQISGPAFYQVNTEMAEKLYQTAIDFAELSEDDVVIDAYSGIGTIG 319
Query: 617 LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
L++A V V G+E+ AV ++ +NA INGI N +VC AE+ M + LK+ + P
Sbjct: 320 LSVAKHVKGVYGVEVIPEAVENSQKNASINGITNAHYVCDTAENAMKNWLKEGVQP 375
>gi|323484926|ref|ZP_08090281.1| hypothetical protein HMPREF9474_02032 [Clostridium symbiosum
WAL-14163]
gi|323401807|gb|EGA94150.1| hypothetical protein HMPREF9474_02032 [Clostridium symbiosum
WAL-14163]
Length = 457
Score = 100 bits (248), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 131/311 (42%), Gaps = 50/311 (16%)
Query: 360 KLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFM--LGNFREGVTAVEEPVDCPNVSEI 417
+ EGI GSPL + YRNK EFS G ++ P M G+F + VT E C V +
Sbjct: 111 EFEGIKGSPLADCYRNKMEFSFGDEVKDGPLALGMHKRGSFYDVVTTGE----CRIVHKD 166
Query: 418 ACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPL-DVENLEVNISEVNIS 476
C + + ++ ++ + + +++G+ R L VR G+ L D+ + +++ +
Sbjct: 167 FCDILLCTKAYFEEKEVGFYKKMQHTGYLRHLLVRRAVKTGEILLDL----ITTTQIGVE 222
Query: 477 EVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPAD 536
E K AG LPL
Sbjct: 223 E------------------------EKELLAGWLERLLVLPLEG-------------KMA 245
Query: 537 APLRLLSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
L + AD +E +V+ + + + L+F ISP +FFQ N+L AE LY
Sbjct: 246 GILHTKNDSLADAVKDEGTEVLYGKDYFFEELLGLKFRISPFSFFQTNSLGAEVLYEKTR 305
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
++ ++FD+ GTGTI LA V+G+E+ AV A NA +NG+ NC F+
Sbjct: 306 EYVGETKGKVVFDLYSGTGTIAQILAPVAEKVVGVEIVKEAVEAAKENARLNGLDNCEFI 365
Query: 655 CAKAEDVMGSL 665
V+ L
Sbjct: 366 AGDVLKVVDEL 376
>gi|392355868|ref|XP_003752156.1| PREDICTED: LOW QUALITY PROTEIN: tRNA
(uracil(54)-C(5))-methyltransferase homolog [Rattus
norvegicus]
Length = 346
Score = 100 bits (248), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 109/244 (44%), Gaps = 37/244 (15%)
Query: 425 FQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQV 484
++ FL QS + F G WR+L VR + PG + + V +S+ L Q
Sbjct: 48 YEVFLXQSSVEPCLLFHEGGHWRELIVRTYK-PGHTMAI----VTFHPQGLSQEELCVQ- 101
Query: 485 SSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSI 544
T D A GA LT+L Q+ ++ + +P LL
Sbjct: 102 -KVTLKD----------FSAKGPGAVCE-----LTSLYFQE-STMTRCSHQQSPYXLLF- 143
Query: 545 PKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTL 604
GEP D++ +I ISP AFFQ+NT AE LY + + + D++
Sbjct: 144 ----GEPYIFEDLLGLKIQ---------ISPDAFFQINTAGAEILYQIIRELRRVNSDSI 190
Query: 605 LFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664
L D CCGTG +GL+LA V G E+ AV DA +A NG+ NC F +AE ++
Sbjct: 191 LLDTCCGTGVVGLSLARVASQVHGFELVEQAVEDARWSAAFNGVTNCEFHAGRAETILPQ 250
Query: 665 LLKD 668
LLK
Sbjct: 251 LLKS 254
>gi|404369919|ref|ZP_10975246.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp.
7_2_43FAA]
gi|226913952|gb|EEH99153.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp.
7_2_43FAA]
Length = 453
Score = 99.8 bits (247), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 140/316 (44%), Gaps = 71/316 (22%)
Query: 363 GILGSPLVNGYRNKCEFSVG-YSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKY 421
G++GS YRNK EF+ G + + T+G + G+ V++ C V E +
Sbjct: 114 GVVGSKEQWEYRNKMEFTFGDFEKGGELTLGMHMKGKSFGIITVDK---CLIVDE---DF 167
Query: 422 ASIFQE---FLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEV 478
++ +E + + +LP + K G+ R L +R+ +N E+
Sbjct: 168 KTVIRETVNYFKDKELPYYRVMKREGYLRHLVIRKA------------------INTGEL 209
Query: 479 ML-IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADA 537
M+ I + FD SE+ L K+ Q ++G
Sbjct: 210 MVNIVTTTQINFD----LSEYVDLLKS-------------------QTYKG--------- 237
Query: 538 PLRLLSIPKADGE-------PEESNDVV-EARIHDSISNLRFCISPTAFFQVNTLAAEKL 589
+L+SI + PE+ N + + I +++ L+F ISP +FFQ NT AE L
Sbjct: 238 --KLVSILHTENNSFSDAVIPEKVNLLFGKDYITENLLGLQFKISPFSFFQTNTKGAESL 295
Query: 590 YSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIK 649
YS+ D+ D ++FD+ CGTGTIG A V+GIE+ AV A NA++N +
Sbjct: 296 YSIVRDFMGESNDKVVFDLYCGTGTIGQIAASNAKKVVGIELIEEAVEAAKENAKLNNLN 355
Query: 650 NCRFVCAKAEDVMGSL 665
NC F+ +++ ++
Sbjct: 356 NCEFLAGDVAEIIKTV 371
>gi|68069515|ref|XP_676669.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56496471|emb|CAH94117.1| conserved hypothetical protein [Plasmodium berghei]
Length = 744
Score = 99.8 bits (247), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 80/349 (22%), Positives = 152/349 (43%), Gaps = 85/349 (24%)
Query: 370 VNGYRNKCEFSVGYSLQAKPTVGFMLG---------------NFREG-VTAVEEPV---- 409
+NGYRNKCEF++ Y +GF++G NF E ++ PV
Sbjct: 344 INGYRNKCEFTISYDENNNVEIGFVVGKVKTNMNETNDENNCNFSENNISNNPSPVNESH 403
Query: 410 -----------------------DCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFW 446
DC ++ + + ++ S+ PV++R +G W
Sbjct: 404 QAKLRNKKQKQCYFLNPIVKNIDDCIHIHSCMKEVVKEMKSIIKDSNYPVFDRVYKTGIW 463
Query: 447 RQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFA 506
R L +R + V+ ++ + + +LI +++ D++ + EF
Sbjct: 464 RLLVIRLNSKKELMITVQTYSLDQKKKRDIKRLLINRLTKKK-DESFM--EF-------- 512
Query: 507 AGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIH--D 564
+ + +L +Q+H G SN D + N+ + H +
Sbjct: 513 -------SNFRVVSLYLQEH-GNSN----------------DSTNQSQNEHLWGVEHLEE 548
Query: 565 SISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPD--TLLFDVCCGTGTIGLTLAHR 622
I +F I+P+ FFQVN + E LY D+ ++ + +FD+CCGTGTI + +A+
Sbjct: 549 IILGNKFLITPSCFFQVNHTSCEILYKKVIDYVNINKNMKNYIFDLCCGTGTISICIANA 608
Query: 623 V---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
+ +++GI++ ++ A++NA+IN IKN +F+ + E++ +K+
Sbjct: 609 MKHEDIIVGIDICEESIISANKNAQINKIKNYKFIKGRVEELFSGEIKN 657
>gi|429767350|ref|ZP_19299550.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium celatum
DSM 1785]
gi|429181058|gb|EKY22249.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium celatum
DSM 1785]
Length = 455
Score = 99.8 bits (247), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 134/297 (45%), Gaps = 55/297 (18%)
Query: 363 GILGSPLVNGYRNKCEFSVG-YSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKY 421
G+ GS YRNK EF+ G + T+G + GV V+ +C V E
Sbjct: 114 GVKGSENCWEYRNKMEFTFGDLEKGGELTLGMHMKGKSFGVLTVD---NCMIVDEDFRTV 170
Query: 422 ASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLI 481
E+ +++ LP + + G+ R L +R+ + G+ +++
Sbjct: 171 LKTTVEYFRKTGLPYYRVMRREGYLRHLVIRKATNTGE-------------------LMV 211
Query: 482 AQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQG--VSNVAPADAPL 539
V++ D + +E+ L KA Q+++G VS + + L
Sbjct: 212 NLVTTTQIDFDL--TEYTELLKA-------------------QNYKGELVSILHTENNSL 250
Query: 540 RLLSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWA 597
+P E +V+ R I +++ L+F ISP +FFQ N+ AE LYSL D+
Sbjct: 251 SDAVVP-------EKVNVLFGRDYIVETLLGLKFKISPFSFFQTNSKGAESLYSLVRDFM 303
Query: 598 DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
G + ++FD+ CGTGTIG A V+G+E+ AV A NA++NG+ NC F+
Sbjct: 304 GDGENKVVFDLYCGTGTIGQIAAPNAKKVVGLELIEEAVEAAKENAKLNGLNNCEFI 360
>gi|225027843|ref|ZP_03717035.1| hypothetical protein EUBHAL_02103 [Eubacterium hallii DSM 3353]
gi|224954790|gb|EEG35999.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium hallii DSM
3353]
Length = 560
Score = 99.8 bits (247), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 89/361 (24%), Positives = 148/361 (40%), Gaps = 74/361 (20%)
Query: 309 HMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSP 368
++SY QL+ KK + ++++K GL +E I GSP
Sbjct: 102 NLSYEQQLDLKKRQVEELIEK-------------------------NGLSFDIENIYGSP 136
Query: 369 LVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVS-EIACKYASIFQ 426
+ GYRNK EF+ G + P +G N + ++ DC V + +I +
Sbjct: 137 ITEGYRNKMEFTFGDEEKDGPLALGMHKKNSFYDIVTLD---DCRIVDPDFNVLLQAILK 193
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
F ++ + +++ ++ GF R L +R G L NL V ++ + E + + S
Sbjct: 194 YFKEKGE-TYFHKIRHEGFLRHLVMRRSVKTGDILI--NL-VTTTQSRLDESEFVNMILS 249
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
D VV ++ + +++V +D L
Sbjct: 250 QKIDGKVV-------------------------GILHTLNDNLADVVQSDETKTLYG--- 281
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
+ ++ + N+RF ISP +FFQ NTL AE LY ++ D L++
Sbjct: 282 ------------QDYFYEYLYNMRFKISPFSFFQTNTLGAEVLYDKVREYVGETKDKLIY 329
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
D+ GTGTI LA V+G+E+ AV A +NA N + NC F+ V+ +L
Sbjct: 330 DLYTGTGTIAQMLASVASKVVGVEIVEEAVEAAKKNAVDNHLDNCEFIAGDVLKVVDNLT 389
Query: 667 K 667
K
Sbjct: 390 K 390
>gi|329920434|ref|ZP_08277166.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
SPIN 1401G]
gi|328936110|gb|EGG32563.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
SPIN 1401G]
Length = 448
Score = 99.8 bits (247), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 95/360 (26%), Positives = 150/360 (41%), Gaps = 78/360 (21%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ LAHM Y QLE KK + +L+K+ N K+
Sbjct: 79 LAALAHMKYERQLEFKKQQVVNLLEKVHLNK-------------------------KVND 113
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
L SP YRNK + V + + VGF FR+ + D +
Sbjct: 114 CLASPESTAYRNKAQVPVRM-VNGQLEVGF----FRKHSHDLVPMTDFLTTDKKIDAAVV 168
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
++ L++ ++P ++ K++G R L +R ++ G+ + ++L+
Sbjct: 169 AVRDILRKFNVPAYDEIKHNGEVRYLEIRRSKANGQLM----------------IVLVCL 212
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQ-GVSNVAPADAPLRLL 542
S DAVV + SL A VI +H +NV +
Sbjct: 213 HKSFKNLDAVVQA----------------IQSLDNVACVILNHNPHKTNVILGEKEY--- 253
Query: 543 SIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPD 602
I +GE I D I +L F IS +FFQ+N+L +LY+L A L +
Sbjct: 254 -ILAGNGE-----------IVDKIGDLSFKISSQSFFQINSLQTPRLYNLAIQKAQLTAN 301
Query: 603 TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
++ D G GTIGL++A V V+G+E+ AV DA +NA +NG+ N + KAE++M
Sbjct: 302 DVVIDAYSGIGTIGLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGVNNAEYFEGKAEELM 361
>gi|164686694|ref|ZP_02210722.1| hypothetical protein CLOBAR_00289 [Clostridium bartlettii DSM
16795]
gi|164604084|gb|EDQ97549.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium bartlettii
DSM 16795]
Length = 466
Score = 99.8 bits (247), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 67/110 (60%)
Query: 559 EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLT 618
+ I D I L F ISP +FFQVN L E LY+ ++A+LG + +FD+ CG GTI L
Sbjct: 276 DGMIRDYIGELVFEISPLSFFQVNPLQTEVLYNKALEYANLGENDTVFDIYCGIGTISLF 335
Query: 619 LAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
LA + V GIE+ A+ DA RNA+IN + N F KAE+V+ + K+
Sbjct: 336 LAQKAKKVYGIEIVEDAIKDAKRNAKINNMDNVEFYVGKAEEVVPKMYKE 385
>gi|449935890|ref|ZP_21803672.1| putative RNA methyltransferase [Streptococcus mutans 2ST1]
gi|450153122|ref|ZP_21877047.1| putative RNA methyltransferase [Streptococcus mutans 21]
gi|449166026|gb|EMB68985.1| putative RNA methyltransferase [Streptococcus mutans 2ST1]
gi|449239361|gb|EMC38086.1| putative RNA methyltransferase [Streptococcus mutans 21]
Length = 451
Score = 99.8 bits (247), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 152/378 (40%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L V R + L H++Y QL K+ + L K+ G+S
Sbjct: 71 LTVDYLRTGIADLGHLTYGQQLNFKRKQVINSLSKIA---------GIS----------- 110
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
++ LG YRNK + V + + GF FR+ A+ D
Sbjct: 111 ---DIEVADTLGMDNPTAYRNKAQVPVR-RVNGQLETGF----FRKNSHALMPIEDYYIQ 162
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+ + + ++ L+ DL ++ + +G R L VR G G+ +
Sbjct: 163 DKEIDRLINFTRDLLRCFDLKPYDEKEQTGLIRNLVVRRGHYTGQIM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++ S F + E++ F P +IQ+ + A
Sbjct: 210 ----LVLVTTRSKIFR---IEQMIEKIISEF-----------PAVKSIIQNINDRNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
+ R L GE D +E D++ R+ IS +F+QVNT+ AEKLY
Sbjct: 252 FGSEFRTLY-----GE-----DTIE----DTMLGNRYIISAQSFYQVNTVMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D++DL PD + D G GTIGL+ A +V V G+E+ +AV DA +NA +N I N +V
Sbjct: 298 DFSDLTPDDTVIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
AE M S K + P
Sbjct: 358 ADSAEKAMASWSKRGIKP 375
>gi|387819135|ref|YP_005679482.1| TrmA family RNA methyltransferase [Clostridium botulinum H04402
065]
gi|322807179|emb|CBZ04753.1| RNA methyltransferase, TrmA family [Clostridium botulinum H04402
065]
Length = 453
Score = 99.8 bits (247), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 87/316 (27%), Positives = 135/316 (42%), Gaps = 49/316 (15%)
Query: 348 IMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVG-YSLQAKPTVGFMLGNFREGVTAVE 406
+ KS+EI G G+ SP YRNK EF+ G T+G + N + V+
Sbjct: 101 LFKSKEIKGFD--FLGVEKSPEEYEYRNKMEFTFGDMEKGGDLTLGMHVKNRNFSIVTVD 158
Query: 407 EPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENL 466
+C V + + + LP + + GF R L +R+ ++ G+ L
Sbjct: 159 ---NCEIVDRDFRNILTTVVNYFNEKRLPKYRVMSHEGFLRNLVIRKAKNTGEIL----- 210
Query: 467 EVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDH 526
VNI S FD + + L K G + ++ +
Sbjct: 211 ------VNI------VTTSQMEFDFKEI---VDMLLKVECKGE--------IKGILHTIN 247
Query: 527 QGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAA 586
+S+V D L +L D I + + L+F I+P AFFQ N+ A
Sbjct: 248 DTLSDVVQVDK-LEILY----------GRD----YIIEELLGLKFKIAPEAFFQTNSKGA 292
Query: 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN 646
EKLYS+ D+ ++FD+ CGTGTIG +A + VIG+E+ AV A+ NA++N
Sbjct: 293 EKLYSIVKDFLGDASSKVVFDLYCGTGTIGQIVAPKAKKVIGVELIEEAVKAANENAKLN 352
Query: 647 GIKNCRFVCAKAEDVM 662
G+ NC F+ V+
Sbjct: 353 GLNNCEFIAGDVAKVI 368
>gi|153931008|ref|YP_001385124.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A str. ATCC 19397]
gi|153937829|ref|YP_001388593.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A str. Hall]
gi|152927052|gb|ABS32552.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A str. ATCC 19397]
gi|152933743|gb|ABS39242.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A str. Hall]
Length = 450
Score = 99.8 bits (247), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 87/316 (27%), Positives = 135/316 (42%), Gaps = 49/316 (15%)
Query: 348 IMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVG-YSLQAKPTVGFMLGNFREGVTAVE 406
+ KS+EI G G+ SP YRNK EF+ G T+G + N + V+
Sbjct: 101 LFKSKEIKGFD--FLGVEKSPEEYEYRNKMEFTFGDMEKGGDLTLGMHVKNRNFSIVTVD 158
Query: 407 EPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENL 466
+C V + + + LP + + GF R L +R+ ++ G+ L
Sbjct: 159 ---NCEIVDRDFRNILTTVVNYFNEKRLPKYRVMSHEGFLRNLVIRKAKNTGEIL----- 210
Query: 467 EVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDH 526
VNI S FD + + L K G + ++ +
Sbjct: 211 ------VNI------VTTSQMEFDFKEI---VDMLLKVECKGE--------IKGILHTIN 247
Query: 527 QGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAA 586
+S+V D L +L D I + + L+F I+P AFFQ N+ A
Sbjct: 248 DTLSDVVQVDK-LEILY----------GRD----YIIEELLGLKFKIAPEAFFQTNSKGA 292
Query: 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN 646
EKLYS+ D+ ++FD+ CGTGTIG +A + VIG+E+ AV A+ NA++N
Sbjct: 293 EKLYSIVKDFLGDASSKVVFDLYCGTGTIGQIVAPKAKKVIGVELIEEAVKAANENAKLN 352
Query: 647 GIKNCRFVCAKAEDVM 662
G+ NC F+ V+
Sbjct: 353 GLNNCEFIAGDVAKVI 368
>gi|227498264|ref|ZP_03928414.1| RNA methyltransferase [Acidaminococcus sp. D21]
gi|226903726|gb|EEH89644.1| RNA methyltransferase [Acidaminococcus sp. D21]
Length = 460
Score = 99.8 bits (247), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 69/111 (62%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
IHD + +L F ISP +FFQVNTL A++LY +A L + D+ CGTGTI L LA
Sbjct: 272 IHDRLGDLTFVISPHSFFQVNTLQAQRLYETALSYAALEGKENVIDLYCGTGTITLFLAQ 331
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
+ +GIE+ A A++DA +NA N IKN F+CA A + L++D + P
Sbjct: 332 KARHALGIEIVAPAIADARKNARDNHIKNSEFICADAAKELPLLVRDGIRP 382
>gi|441432344|ref|YP_007354386.1| SAM-dependent methyltransferase [Acanthamoeba polyphaga
moumouvirus]
gi|440383424|gb|AGC01950.1| SAM-dependent methyltransferase [Acanthamoeba polyphaga
moumouvirus]
Length = 354
Score = 99.8 bits (247), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 76/119 (63%), Gaps = 8/119 (6%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLY----SLGGDWADLGPDTLLFDVCCGTGTIGL 617
I++ + N F ISP +FFQVNT A E LY L + + + +LFD+CCGTGTIG
Sbjct: 159 IYEKLDNYIFKISPESFFQVNTYATEVLYGTIKQLVIKYFNKCDNNILFDLCCGTGTIGT 218
Query: 618 TLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD----YLNP 672
+A+ VIGI++ +S+++DA N +IN IKN F+CA E+++ +++ D Y+NP
Sbjct: 219 YVANIFTQVIGIDIKSSSINDAIFNQKINNIKNSHFICAPIENILDNIIDDMINKYINP 277
>gi|315653825|ref|ZP_07906741.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus iners ATCC
55195]
gi|315488521|gb|EFU78167.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus iners ATCC
55195]
Length = 447
Score = 99.8 bits (247), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 96/360 (26%), Positives = 149/360 (41%), Gaps = 78/360 (21%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ LAHM Y QLE KK + +L+K+ N K+
Sbjct: 79 LAALAHMKYERQLEFKKQQVVNLLEKVHLNK-------------------------KVND 113
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
L SP YRNK + V + + VGF FR+ + D +
Sbjct: 114 CLASPESTAYRNKAQVPVRM-VNGQLEVGF----FRKHSHDLVPMTDFLTTDKKIDAAVV 168
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
++ L++ ++P ++ K++G R L +R ++ + + ++L+
Sbjct: 169 AVRDILRKFNVPAYDEIKHNGEVRYLEIRRSKANDQLM----------------IVLVCL 212
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQ-GVSNVAPADAPLRLL 542
S DAVV + SL A VI +H +NV +
Sbjct: 213 HKSFKNLDAVVQA----------------IKSLDDVACVILNHNPHKTNVILGEKEY--- 253
Query: 543 SIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPD 602
I +GE I D I +L F IS +FFQ+N+L +LY+L A L D
Sbjct: 254 -ILAGNGE-----------IVDKIGDLSFKISSQSFFQINSLQTPRLYNLAIQKAQLTAD 301
Query: 603 TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
++ D G GTIGL++A V V+G+E+ AV DA +NA +NGI N + KAE++M
Sbjct: 302 DVVIDAYSGIGTIGLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGINNAEYFEGKAEELM 361
>gi|255505413|ref|ZP_05345917.3| 23S rRNA (uracil-5-)-methyltransferase RumA [Bryantella
formatexigens DSM 14469]
gi|255268319|gb|EET61524.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Marvinbryantia
formatexigens DSM 14469]
Length = 466
Score = 99.8 bits (247), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 84/303 (27%), Positives = 139/303 (45%), Gaps = 52/303 (17%)
Query: 361 LEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVT-AVEEPVDCPNVSEIAC 419
+E I+G YRNK ++ +G K G ++ F G T ++ + C +E+
Sbjct: 128 MEPIIGMEQPFYYRNKAQYPIG-----KDKDGHIVAGFYAGRTHSIIDNRRCFLGAEVNE 182
Query: 420 KYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVM 479
+ +I ++++ + ++ G R + +R G E+M
Sbjct: 183 EILNIIISYMEKEFVSPYDEKTGRGLVRHVLIRCG------------------FTTKEIM 224
Query: 480 LIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL 539
+ V+ T E+L +A P++ T++ I ++ +NV +
Sbjct: 225 VCLIVNGTTLPKE------EKLVEALR-----KVPNM--TSISINTNREKTNVIMGK-DV 270
Query: 540 RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
RLL G P I D I N+R+ ISP +FFQVN + EKLYSL ++A L
Sbjct: 271 RLLW-----GRP---------YIEDYIGNIRYQISPLSFFQVNPVQTEKLYSLALEYAGL 316
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659
++D+ CG GTI L LA + V G+E+ A+ DA RNA+INGI N +F +AE
Sbjct: 317 TGKETVWDLYCGIGTISLFLAQQARQVYGVEVIPQAIDDACRNAKINGIANAQFFVGRAE 376
Query: 660 DVM 662
+++
Sbjct: 377 EIL 379
>gi|421146271|ref|ZP_15605988.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
agalactiae GB00112]
gi|401687055|gb|EJS83018.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
agalactiae GB00112]
Length = 453
Score = 99.8 bits (247), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 104/416 (25%), Positives = 165/416 (39%), Gaps = 77/416 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGN-DEGLAGD---GSGLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGE+ + G G +E L GL R + L H++Y QL
Sbjct: 33 ENALPGEIIKMRVLKLRKRIGYGKVEEYLTTSPHRNEGLDYTYLRTGIADLGHLTYEQQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K+ +A L K+ + +E LG + YRNK
Sbjct: 93 LFKQKQVADNLYKIAHIS-----------------------DVLVEPTLGMTIPLAYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N V+ + + + + + ++ L++ D+
Sbjct: 130 AQVPVR-RVDGQLETGFFRKNSHTLVSIEDYLIQEKEIDALI----NFTRDLLRKFDVKP 184
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
++ + SG R L VR G G+ + +++ F ++
Sbjct: 185 YDEEQQSGLIRNLVVRRGHYTGQLM-----------------LVLVTTRPKIFR---IDQ 224
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESND 556
E+L AF PS+ I D SNV I + +D
Sbjct: 225 MIEKLVSAF--------PSVVSIMQNINDRN--SNV-----------IFGKEFRTLYGSD 263
Query: 557 VVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIG 616
+E D + + IS +F+QVNT AEKLY D++DL + ++ D G GTIG
Sbjct: 264 TIE----DQMLGNTYAISAQSFYQVNTEMAEKLYQKAIDFSDLNSEDIVIDAYSGIGTIG 319
Query: 617 LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
L++A +V V G+E+ AVSDA NA NGI N +V AE+ M LK+ + P
Sbjct: 320 LSVAKQVKHVYGVEVVEKAVSDAKENATRNGITNSTYVADSAENAMAKWLKEGIKP 375
>gi|289578813|ref|YP_003477440.1| TrmA family RNA methyltransferase [Thermoanaerobacter italicus Ab9]
gi|289528526|gb|ADD02878.1| RNA methyltransferase, TrmA family [Thermoanaerobacter italicus
Ab9]
Length = 453
Score = 99.8 bits (247), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 93/360 (25%), Positives = 147/360 (40%), Gaps = 74/360 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
H+SY QL++K + L++ IG + K+ I+G
Sbjct: 85 FQHLSYEGQLKYKTQKVKDNLER------------------------IGKVYTKVHEIIG 120
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
YRNK +F VG L + GF + + +E C +E + A +
Sbjct: 121 MKEPQRYRNKAQFPVG-MLDGEVVTGFYAPRSHD-IAPIE---SCMIQNETSDNIARTVR 175
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
++++ ++ V++ G R + R G EVM+I V+
Sbjct: 176 NWIKKYNVSVYDEKAGKGLIRHIVTRVAFKTG------------------EVMVILVVNG 217
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
E+L A L ++V+ + +NV + + +
Sbjct: 218 KHIPYK------EQLIDALKKEIKG------LKSVVLNINTKRTNVIMGEDNITIYG--- 262
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
S++++ D I +++F ISP +FFQVN + E LY ++ADL + +
Sbjct: 263 -------SDNII-----DYIKDIKFEISPLSFFQVNPVQTEVLYGKVLEYADLKGNETVI 310
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
DV CG GTI L A + V GIE AV DA RNA INGIKN F+ +AE VM L+
Sbjct: 311 DVYCGIGTISLFAAQKAFFVYGIEAVHQAVEDAKRNAYINGIKNVEFISGQAEKVMPELV 370
>gi|158319773|ref|YP_001512280.1| RNA methyltransferase [Alkaliphilus oremlandii OhILAs]
gi|158139972|gb|ABW18284.1| RNA methyltransferase, TrmA family [Alkaliphilus oremlandii OhILAs]
Length = 450
Score = 99.8 bits (247), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 87/329 (26%), Positives = 143/329 (43%), Gaps = 50/329 (15%)
Query: 340 NGVSLPEWIMKSR-EIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGN 397
N ++L E ++S E GL GI SP + YRNK E++ G + P ++G + N
Sbjct: 89 NELALKEKQIRSLFEKEGLHVNFLGIEASPSIKAYRNKMEYTFGDEERGGPLSLGLHMKN 148
Query: 398 -FREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRS 456
F E V DC V E +++ +Q +P +N+ ++ G R L +R+ S
Sbjct: 149 RFYESVNTW----DCNIVDEDFTLIRESIRDYFEQKKVPFYNKRQHKGVLRHLVIRKAVS 204
Query: 457 PGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSL 516
SE++ V+ T + ++ E A + + S
Sbjct: 205 S------------------SEIL----VNLVTTSQSPIHHE------ALKDMILSLNLSG 236
Query: 517 PLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPT 576
+ ++ + G+ + AD L I + + L+F ISP
Sbjct: 237 RIAGILHTINDGLGDTVKADQMELLYG---------------RDYIVEELLGLKFKISPF 281
Query: 577 AFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAV 636
+FFQ N+L AEKLY++ ++A D ++FD+ GTGTI +A VIGIE+ AV
Sbjct: 282 SFFQTNSLGAEKLYTIAREFAGDIDDKIVFDLYSGTGTIAQIMAPVAKKVIGIEIVEEAV 341
Query: 637 SDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
A NA++NG+ N F+ + + L
Sbjct: 342 EMAKENAKMNGLDNVEFIAGDVLEAVNDL 370
>gi|330839061|ref|YP_004413641.1| RNA methyltransferase, TrmA family [Selenomonas sputigena ATCC
35185]
gi|329746825|gb|AEC00182.1| RNA methyltransferase, TrmA family [Selenomonas sputigena ATCC
35185]
Length = 458
Score = 99.8 bits (247), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 98/367 (26%), Positives = 150/367 (40%), Gaps = 76/367 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLP-CKLEGIL 365
L H+SY QL K+ + +++ IGGL ++ +L
Sbjct: 88 LQHLSYGGQLHWKRQQVVDAVER------------------------IGGLSGIEVLPVL 123
Query: 366 GSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF 425
G+ YRNK +F VG K ++G F +G + + DC + ++
Sbjct: 124 GAKEPWLYRNKMQFPVG-----KKRGKTVIGCFAKGSHDIIDTRDCRIQKDGNNTIVNVM 178
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
+E +++ +PV++ +++G R + R G EN E M++ +
Sbjct: 179 REIVERLHIPVYDEDRHTGVLRHIVGRIG---------EN----------GEAMVVLVTA 219
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
+ A E RL + +P V Q+ Q N +LL
Sbjct: 220 TKDLPKA---KEITRLLRE----------RVPNLKSVQQNIQTYRNNVILGRETKLLW-- 264
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
G+P I D I LRF IS +FFQVNT A LY ++ADL +
Sbjct: 265 ---GKPT---------IPDRIGRLRFSISARSFFQVNTEQAAVLYEKALEYADLSGKETV 312
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
D CGTGTI L LA + V GIE+ A+ DA +NA N IKN F+ A ++M L
Sbjct: 313 IDAYCGTGTITLFLAQKAHRVYGIEIVKPAIEDAKKNARDNHIKNAAFLVGDATELMPRL 372
Query: 666 LKDYLNP 672
+ + P
Sbjct: 373 CHENIRP 379
>gi|77406146|ref|ZP_00783219.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae H36B]
gi|77175269|gb|EAO78065.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae H36B]
Length = 453
Score = 99.8 bits (247), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 104/416 (25%), Positives = 165/416 (39%), Gaps = 77/416 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGN-DEGLAGD---GSGLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGE+ + G G +E L GL R + L H++Y QL
Sbjct: 33 ENALPGEIIKMRVLKLRKRIGYGKVEEYLTTSPHRNEGLDYTYLRTGIADLGHLTYEQQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K+ +A L K+ + +E LG + YRNK
Sbjct: 93 LFKQKQVADNLYKIAHIS-----------------------DVLVEPTLGMTIPLAYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N V+ + + + + + ++ L++ D+
Sbjct: 130 AQVPVR-RVDGQLETGFFRKNSHTLVSIEDYLIQEKEIDALI----NFTRDLLRKFDVKP 184
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
++ + SG R L VR G G+ + +++ F ++
Sbjct: 185 YDEEQQSGLIRNLVVRRGHYTGQLM-----------------LVLVTTRPKIFR---IDQ 224
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESND 556
E+L AF PS+ I D SNV I + +D
Sbjct: 225 MIEKLVSAF--------PSVVSIMQNINDRN--SNV-----------IFGKEFRTLYGSD 263
Query: 557 VVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIG 616
+E D + + IS +F+QVNT AEKLY D++DL + ++ D G GTIG
Sbjct: 264 TIE----DQMLGNTYAISAQSFYQVNTEMAEKLYQKAIDFSDLNSEDIVIDAYSGIGTIG 319
Query: 617 LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
L++A +V V G+E+ AVSDA NA NGI N +V AE+ M LK+ + P
Sbjct: 320 LSVAKQVKHVYGVEVVEKAVSDAKENATRNGITNSTYVADSAENAMAKWLKEGIKP 375
>gi|392969916|ref|ZP_10335327.1| uncharacterized RNA methyltransferase [Staphylococcus equorum
subsp. equorum Mu2]
gi|392512063|emb|CCI58526.1| uncharacterized RNA methyltransferase [Staphylococcus equorum
subsp. equorum Mu2]
Length = 453
Score = 99.8 bits (247), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 89/356 (25%), Positives = 151/356 (42%), Gaps = 72/356 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L HM+Y QL KK + + RKA + I+ IG +
Sbjct: 85 LQHMTYQAQLNMKKEQVVNLFH------RKA-----DFKDTIIHDT-IG---------MD 123
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
+P YRNK + VG + + K GF +R+ + + +C + + +
Sbjct: 124 NPWF--YRNKSQVPVGKNNENKVITGF----YRQRSHDIIDMDECLIQDNMHQDVLNQLK 177
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
+ + ++ ++N K G R + +R G E+M++ +
Sbjct: 178 LWFNELNISIYNERKKQGLMRHVVIRTGHHS------------------RELMVVFVTNG 219
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
F + V +E +L AF P + + D SNV + L
Sbjct: 220 KKFKQSDVLTE--KLVAAF--------PEIVSVKHNVNDTH--SNVIMGETSYTLY---- 263
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
G+ E I D++S++ F IS +F+Q+N++ EKLY ++A+L + +
Sbjct: 264 --GKDE---------IQDTLSDVTFKISDQSFYQINSIQTEKLYQRAIEYAELKGEETIL 312
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
D CG GTIGL +A + V G+E+ A++DA +NA +N +N FVC KAE+V+
Sbjct: 313 DTYCGIGTIGLYMAPKAQHVYGVEIVPEAIADAKQNATLNQFENTTFVCGKAEEVI 368
>gi|22536806|ref|NP_687657.1| RNA methyltransferase [Streptococcus agalactiae 2603V/R]
gi|25010677|ref|NP_735072.1| hypothetical protein gbs0613 [Streptococcus agalactiae NEM316]
gi|76788448|ref|YP_329346.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
agalactiae A909]
gi|76799166|ref|ZP_00781348.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
agalactiae 18RS21]
gi|77407748|ref|ZP_00784502.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae COH1]
gi|406709096|ref|YP_006763822.1| RNA methyltransferase [Streptococcus agalactiae GD201008-001]
gi|424049832|ref|ZP_17787383.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
agalactiae ZQ0910]
gi|50401576|sp|Q8E0T7.1|Y633_STRA5 RecName: Full=Uncharacterized RNA methyltransferase SAG0633
gi|50401578|sp|Q8E6F5.1|Y613_STRA3 RecName: Full=Uncharacterized RNA methyltransferase gbs0613
gi|22533652|gb|AAM99529.1|AE014220_1 RNA methyltransferase, TrmA family [Streptococcus agalactiae
2603V/R]
gi|23095031|emb|CAD46257.1| Unknown [Streptococcus agalactiae NEM316]
gi|76563505|gb|ABA46089.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
agalactiae A909]
gi|76585475|gb|EAO62051.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
agalactiae 18RS21]
gi|77173614|gb|EAO76729.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae COH1]
gi|389648675|gb|EIM70169.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
agalactiae ZQ0910]
gi|406649981|gb|AFS45382.1| RNA methyltransferase [Streptococcus agalactiae GD201008-001]
Length = 451
Score = 99.8 bits (247), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 104/416 (25%), Positives = 165/416 (39%), Gaps = 77/416 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGN-DEGLAGD---GSGLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGE+ + G G +E L GL R + L H++Y QL
Sbjct: 33 ENALPGEIIKMRVLKLRKRIGYGKVEEYLTTSPHRNEGLDYTYLRTGIADLGHLTYEQQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K+ +A L K+ + +E LG + YRNK
Sbjct: 93 LFKQKQVADNLYKIAHIS-----------------------DVLVEPTLGMTIPLAYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N V+ + + + + + ++ L++ D+
Sbjct: 130 AQVPVR-RVDGQLETGFFRKNSHTLVSIEDYLIQEKEIDALI----NFTRDLLRKFDVKP 184
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
++ + SG R L VR G G+ + +++ F ++
Sbjct: 185 YDEEQQSGLIRNLVVRRGHYTGQLM-----------------LVLVTTRPKIFR---IDQ 224
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESND 556
E+L AF PS+ I D SNV I + +D
Sbjct: 225 MIEKLVSAF--------PSVVSIMQNINDRN--SNV-----------IFGKEFRTLYGSD 263
Query: 557 VVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIG 616
+E D + + IS +F+QVNT AEKLY D++DL + ++ D G GTIG
Sbjct: 264 TIE----DQMLGNTYAISAQSFYQVNTEMAEKLYQKAIDFSDLNSEDIVIDAYSGIGTIG 319
Query: 617 LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
L++A +V V G+E+ AVSDA NA NGI N +V AE+ M LK+ + P
Sbjct: 320 LSVAKQVKHVYGVEVVEKAVSDAKENATRNGITNSTYVADSAENAMAKWLKEGIKP 375
>gi|352685232|ref|YP_004897217.1| RNA methyltransferase [Acidaminococcus intestini RyC-MR95]
gi|350279887|gb|AEQ23077.1| RNA methyltransferase [Acidaminococcus intestini RyC-MR95]
Length = 463
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 69/111 (62%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
IHD + +L F ISP +FFQVNTL A++LY +A L + D+ CGTGTI L LA
Sbjct: 275 IHDRLGDLTFVISPHSFFQVNTLQAQRLYETALSYAALEGKENVIDLYCGTGTITLFLAQ 334
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
+ +GIE+ A A++DA +NA N IKN F+CA A + L++D + P
Sbjct: 335 KARHALGIEIVAPAIADARKNARDNHIKNSEFICADAAKELPLLVRDGIRP 385
>gi|312875412|ref|ZP_07735416.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
LEAF 2053A-b]
gi|311089075|gb|EFQ47515.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
LEAF 2053A-b]
Length = 450
Score = 99.4 bits (246), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 95/360 (26%), Positives = 149/360 (41%), Gaps = 78/360 (21%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ LAHM Y QLE KK + +L+K+ N K+
Sbjct: 79 LAALAHMKYERQLEFKKQQVVNLLEKVHLNK-------------------------KVND 113
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
L SP YRNK + V + + VGF FR+ + D +
Sbjct: 114 CLASPESTAYRNKAQVPVRM-VNGQLEVGF----FRKHSHDLVPMTDFLTTDKKIDAAVV 168
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
++ L++ ++P ++ K++G R L +R ++ G+ + ++L+
Sbjct: 169 AVRDILRKFNVPAYDEIKHNGEVRYLEIRRSKANGQLM----------------IVLVCL 212
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQ-GVSNVAPADAPLRLL 542
S D VV + SL A VI +H +NV +
Sbjct: 213 HKSFNNLDTVVQA----------------IQSLDNVACVILNHNPHKTNVILGEKEY--- 253
Query: 543 SIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPD 602
I +GE I D I +L F IS +FFQ+N+L +LY+L A L +
Sbjct: 254 -ILAGNGE-----------IVDKIGDLSFKISSQSFFQINSLQTPRLYNLAIQKAQLTAN 301
Query: 603 TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
++ D G GTIGL++A V V+G+E+ AV DA +NA +NGI N + KAE++M
Sbjct: 302 DVVIDAYSGIGTIGLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGINNAEYFEGKAEELM 361
>gi|322385303|ref|ZP_08058948.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus cristatus
ATCC 51100]
gi|417922035|ref|ZP_12565525.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
cristatus ATCC 51100]
gi|321270562|gb|EFX53477.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus cristatus
ATCC 51100]
gi|342833920|gb|EGU68200.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
cristatus ATCC 51100]
Length = 453
Score = 99.4 bits (246), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 114/455 (25%), Positives = 183/455 (40%), Gaps = 93/455 (20%)
Query: 216 KNAVEELEGISIGNKTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASS 275
KN + E+E + + ++ VA V R F E+A+P E+
Sbjct: 4 KNDIIEVEIVDLSHEGAGVAKVDGRVF----------------FIENALPSEVIRMRVLK 47
Query: 276 NGHEDGNGNDEGLAGDGSG----LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLT 331
+ G G E + + R + L H++Y QL K + L K+
Sbjct: 48 VNKKIGFGRVEEFVNKSDQRNEHVDLAYLRTGIADLGHLAYPAQLAFKGKQVQDCLYKIA 107
Query: 332 RNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTV 391
G+S E + E G+ PL YRNK + V + +
Sbjct: 108 ---------GISDVEVL----ETLGM--------DQPL--AYRNKAQVPVR-RVNGQLET 143
Query: 392 GFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTV 451
GF N + + + + P + ++ ++ L++ L ++ + +G R L V
Sbjct: 144 GFFRKNSHDLLPIEDFYIQDPIIDQVIV----FVRDLLRRFALKPYDEKEGTGLIRNLVV 199
Query: 452 REGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATA 511
R G + G+ + I N S++ + Q+ ERL +AF
Sbjct: 200 RRGHNSGEIM-------VILVTNRSKIFRVEQL-------------IERLTEAF------ 233
Query: 512 SSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRF 571
P ++Q+ N P +A I + D I DS+ +F
Sbjct: 234 -----PAIKSIMQN----INDQPGNA------IFGREFRTLYGQDF----ITDSMLGKQF 274
Query: 572 CISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEM 631
I+ AF+QVNT AEKLY D+AD + ++ D G GTIGL+LA RV V G+E+
Sbjct: 275 QIAAPAFYQVNTEMAEKLYQTAFDFADFKKEDIVLDAYSGIGTIGLSLADRVQQVYGVEV 334
Query: 632 NASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
AV ++ RNAE+NGI + +VCA AE + + L
Sbjct: 335 IPEAVENSQRNAELNGITSASYVCAPAEKAIQTWL 369
>gi|429736141|ref|ZP_19270058.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sp. oral
taxon 138 str. F0429]
gi|429156047|gb|EKX98688.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sp. oral
taxon 138 str. F0429]
Length = 466
Score = 99.4 bits (246), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 101/367 (27%), Positives = 144/367 (39%), Gaps = 76/367 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG-IL 365
L H+SY QL K+ AQ++ LT IG LP L L
Sbjct: 97 LQHLSYEEQLHAKR---AQVVDALT---------------------HIGKLPQILVNETL 132
Query: 366 GSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF 425
+ YRNK +F +G ++G F +G + +C + A+
Sbjct: 133 RADAPWNYRNKMQFPIGLHKGR-----LIVGCFAQGSHRIINTENCHIQRSANNELANTV 187
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
+E ++ + V+N + G R + R GR +E+M + +
Sbjct: 188 REVAEKLHISVYNEDTHKGILRHIVGRVGRG-------------------NELMAVIVTA 228
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
+ A +F RL + LP V Q+ Q N LL
Sbjct: 229 TKQLPHA---KDFVRLLRE----------RLPHLVSVHQNIQTYRNNVIMGRDTELLW-- 273
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
G P I D++ L F ISP +FFQVNT AE+LY +ADL +
Sbjct: 274 ---GRPT---------ILDTLGRLNFHISPRSFFQVNTRQAERLYEQALAYADLHGTETV 321
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
D CGTGTI L LA + V GIE+ A+ DA +NA N +KN F+ A VM +L
Sbjct: 322 IDAYCGTGTITLFLAQKARKVYGIEIVQPAILDARKNARDNHVKNAEFIVGDATAVMPAL 381
Query: 666 LKDYLNP 672
K + P
Sbjct: 382 YKQGIRP 388
>gi|153939426|ref|YP_001392140.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
F str. Langeland]
gi|384463128|ref|YP_005675723.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
F str. 230613]
gi|152935322|gb|ABS40820.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
F str. Langeland]
gi|295320145|gb|ADG00523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
F str. 230613]
Length = 453
Score = 99.4 bits (246), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 86/316 (27%), Positives = 135/316 (42%), Gaps = 49/316 (15%)
Query: 348 IMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVG-YSLQAKPTVGFMLGNFREGVTAVE 406
+ KS+EI G G+ SP YRNK EF+ G T+G + N + V+
Sbjct: 101 LFKSKEIKGFD--FLGVEKSPEEYEYRNKMEFTFGDMEKGGDLTLGMHVKNRNFSIVTVD 158
Query: 407 EPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENL 466
+C V + + + LP + + GF R L +R+ ++ G+ L
Sbjct: 159 ---NCEIVDRDFRNILTTVVNYFNEKRLPKYRVMSHEGFLRNLVIRKAKNTGEIL----- 210
Query: 467 EVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDH 526
+NI S FD + + L K G + ++ +
Sbjct: 211 ------INI------VTTSQMEFDFKEI---VDMLLKVECKGE--------IKGILHTIN 247
Query: 527 QGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAA 586
+S+V D L +L D I + + L+F I+P AFFQ N+ A
Sbjct: 248 DTLSDVVQVDK-LEILY----------GRD----YIIEELLGLKFKIAPEAFFQTNSKGA 292
Query: 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN 646
EKLYS+ D+ ++FD+ CGTGTIG +A + VIG+E+ AV A+ NA++N
Sbjct: 293 EKLYSIVKDFLGDASSKVVFDLYCGTGTIGQIVAPKAKKVIGVELIEEAVKAANENAKLN 352
Query: 647 GIKNCRFVCAKAEDVM 662
G+ NC F+ V+
Sbjct: 353 GLNNCEFIAGDVAKVI 368
>gi|336420681|ref|ZP_08600843.1| hypothetical protein HMPREF0993_00220 [Lachnospiraceae bacterium
5_1_57FAA]
gi|336005913|gb|EGN35956.1| hypothetical protein HMPREF0993_00220 [Lachnospiraceae bacterium
5_1_57FAA]
Length = 565
Score = 99.4 bits (246), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 84/321 (26%), Positives = 138/321 (42%), Gaps = 55/321 (17%)
Query: 354 IGGLPCK-----LEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEP 408
IG +P + LE I+G YRNK +F +G + GF G ++
Sbjct: 106 IGEVPAEVLDQALEPIVGMENPFHYRNKAQFPIGTDNEGHIITGFYAGR----THSIIPN 161
Query: 409 VDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEV 468
DC E+ F+++ + ++ ++ G R + +R G
Sbjct: 162 TDCALGVEVNEVILKQILTFMEEYKISAYDETEHKGLVRHVLIRYGFVT----------- 210
Query: 469 NISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQG 528
E+M+ ++ + +E RLAK +T++ + ++
Sbjct: 211 -------KEIMVCLVINGNHLPHGEILAE--RLAKIEG-----------MTSITLSINKE 250
Query: 529 VSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEK 588
+NV I + EP + I D I+N+++ ISP +F+QVN + EK
Sbjct: 251 KTNV-----------IMGSKIEPLWG----KTYITDYIANVKYQISPLSFYQVNPVQTEK 295
Query: 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI 648
LY L ++A L ++D+ CG GTI L LA + V G+E+ A+ DA NA+INGI
Sbjct: 296 LYGLALEYAGLTGKETVWDLYCGIGTISLFLAQKAKEVYGVEIVPQAIEDASNNAKINGI 355
Query: 649 KNCRFVCAKAEDVMGSLLKDY 669
+N RF KAE+V+ Y
Sbjct: 356 ENARFYVGKAEEVLPEYYAQY 376
>gi|77411137|ref|ZP_00787490.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae
CJB111]
gi|77162860|gb|EAO73818.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae
CJB111]
Length = 451
Score = 99.4 bits (246), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 104/416 (25%), Positives = 165/416 (39%), Gaps = 77/416 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGN-DEGLAGD---GSGLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGE+ + G G +E L GL R + L H++Y QL
Sbjct: 33 ENALPGEIIKMRILKLRKRIGYGKVEEYLTTSPHRNEGLDYTYLRTGIADLGHLTYEQQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K+ +A L K+ + +E LG + YRNK
Sbjct: 93 LFKQKQVADNLYKIAHIS-----------------------DVLVEPTLGMTIPLAYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N V+ + + + + + ++ L++ D+
Sbjct: 130 AQVPVR-RVDGQLETGFFRKNSHTLVSIEDYLIQEKEIDALI----NFTRDLLRKFDVKP 184
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
++ + SG R L VR G G+ + +++ F ++
Sbjct: 185 YDEEQQSGLIRNLVVRRGHYTGQLM-----------------LVLVTTRPKIFR---IDQ 224
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESND 556
E+L AF PS+ I D SNV I + +D
Sbjct: 225 MIEKLVSAF--------PSVVSIMQNINDRN--SNV-----------IFGKEFRTLYGSD 263
Query: 557 VVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIG 616
+E D + + IS +F+QVNT AEKLY D++DL + ++ D G GTIG
Sbjct: 264 TIE----DQMLGNTYAISAQSFYQVNTEMAEKLYQKAIDFSDLNSEDIVIDAYSGIGTIG 319
Query: 617 LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
L++A +V V G+E+ AVSDA NA NGI N +V AE+ M LK+ + P
Sbjct: 320 LSVAKQVKHVYGVEVVEKAVSDAKENATRNGITNSTYVADSAENAMAKWLKEGIKP 375
>gi|335031494|ref|ZP_08524926.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
anginosus SK52 = DSM 20563]
gi|333769382|gb|EGL46507.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
anginosus SK52 = DSM 20563]
Length = 543
Score = 99.0 bits (245), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 101/420 (24%), Positives = 165/420 (39%), Gaps = 85/420 (20%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDG----SGLKVKSARDVVTPLAHMSYSVQL 316
E+A+P E + G G E + V R + L H+ YS QL
Sbjct: 33 ENALPTERIRMRILKVNKKIGFGKVEAYLTKSLYRNEDVDVAYLRTGIADLGHLKYSEQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K + L K+ G ++ LG YRNK
Sbjct: 93 KFKTKKVRDSLYKIA-----------------------GIADIEVAPTLGMEHPLHYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + + + + P + ++ ++ L++ DL
Sbjct: 130 AQVPVR-RVNGQLETGFFRKNSHDLMPIEDFYIQDPVIDQVVLA----VRDLLRRFDLKP 184
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
++ + SG R + VR G G E+M+I + +N
Sbjct: 185 YDEKEQSGLIRNIVVRRGHYSG------------------EIMVILVTTRPKIFR--INQ 224
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL----RLLSIPKADGEPE 552
ERL F+A + + Q ++N P +A L R+L
Sbjct: 225 LIERLVAQFSAIKSVT--------------QNINN-QPGNAILGKEFRVLY--------- 260
Query: 553 ESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGT 612
D + R+ D+ F I+ AF+QVNT AEKLY + D+A+L + ++ D G
Sbjct: 261 -GQDYITDRMLDN----DFQIAAPAFYQVNTEMAEKLYQMAIDFAELSTEDIVVDAYSGI 315
Query: 613 GTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GTIGL++A V V G+E+ AV ++ +NAE+NGI N ++C AE+ + L + P
Sbjct: 316 GTIGLSVAKHVKEVYGVEVIPQAVENSKKNAELNGISNAHYICDSAENAIKKWLNQGIKP 375
>gi|197302873|ref|ZP_03167925.1| hypothetical protein RUMLAC_01602 [Ruminococcus lactaris ATCC
29176]
gi|197298110|gb|EDY32658.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus lactaris
ATCC 29176]
Length = 555
Score = 99.0 bits (245), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 125/297 (42%), Gaps = 50/297 (16%)
Query: 373 YRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQS 432
YRNK +F G + P GF G + + E + EI I ++++++
Sbjct: 130 YRNKAQFPFGTDKEGNPVTGFYAGRTHDIIANTECILGVEQNREIL----EIILQYMKEN 185
Query: 433 DLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDA 492
+ ++ G R + +R G + E+M+ ++ A
Sbjct: 186 CVAAYDEKSGKGLIRHVLIRYGFTT------------------KEIMVCLVINGTKLPKA 227
Query: 493 VVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPE 552
+RL K + +T++ + + NV ++ L
Sbjct: 228 ------DRLIKKL-------TQLEGMTSITLSPNTRRDNVIMGNSYEVLWG--------- 265
Query: 553 ESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGT 612
+ I D I N+++ ISP +F+QVN + EKLY L ++ADL ++D+ CG
Sbjct: 266 ------QGFITDYIGNVKYQISPLSFYQVNPVQTEKLYGLALEYADLKGTETVWDLYCGI 319
Query: 613 GTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDY 669
GTI L LA + V G+E+ A+ DA NA+IN I N F KAE+V+ ++Y
Sbjct: 320 GTISLFLAQKAKQVYGVEIVPQAIEDAKNNAKINEINNAAFYVGKAEEVLPDYYEEY 376
>gi|450131653|ref|ZP_21869614.1| putative RNA methyltransferase [Streptococcus mutans NLML8]
gi|449153659|gb|EMB57309.1| putative RNA methyltransferase [Streptococcus mutans NLML8]
Length = 451
Score = 99.0 bits (245), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 94/378 (24%), Positives = 151/378 (39%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L V R + L H++Y QL K+ + L K+ G+S
Sbjct: 71 LTVDYLRTGIADLGHLTYGQQLNFKRKQVINSLSKIA---------GIS----------- 110
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
++ LG YRNK + V + + GF N + + + + +
Sbjct: 111 ---DIEVADTLGMDNPTAYRNKAQVPVR-RVNGQLETGFFRKNSHDLMPIEDYYIQDKEI 166
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+ + ++ L+ DL ++ + +G R L VR G G+ +
Sbjct: 167 DRLI----NFTRDLLRCFDLKPYDEKEQTGLIRNLVVRRGHYTGQIM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++ S F + E++ F P +IQ+ + A
Sbjct: 210 ----LVLVTTRSKIFR---IEQMIEKIVSEF-----------PAVKSIIQNINDRNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
+ R L GE D +E D++ R+ IS +F+QVNT+ AEKLY
Sbjct: 252 FGSEFRTLY-----GE-----DTIE----DTMLGNRYIISAQSFYQVNTVMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D++DL PD + D G GTIGL+ A +V V G+E+ +AV DA +NA +N I N +V
Sbjct: 298 DFSDLTPDDTVIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
AE M S K + P
Sbjct: 358 ADSAEKAMASWSKRGIKP 375
>gi|170757395|ref|YP_001782496.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
B1 str. Okra]
gi|169122607|gb|ACA46443.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
B1 str. Okra]
Length = 458
Score = 99.0 bits (245), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 84/318 (26%), Positives = 135/318 (42%), Gaps = 53/318 (16%)
Query: 348 IMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVG-YSLQAKPTVGFMLGNFREGVTAVE 406
+ KS+EI G G+ SP YRNK EF+ G T+G + N + V+
Sbjct: 106 LFKSKEIKGFD--FLGVEKSPEEYEYRNKMEFTFGDMEKGGDLTLGMHVKNRNFSIVTVD 163
Query: 407 EPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENL 466
+ C V + + + LP + + GF R L +R+ ++ G+ L
Sbjct: 164 K---CEIVDRDFRNILTTVVNYFNEKRLPKYRVMSHEGFLRNLVIRKAKNTGEIL----- 215
Query: 467 EVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDH 526
+NI S FD + + L K G + ++ +
Sbjct: 216 ------INI------VTTSQMEFDFKEI---VDMLLKVECKGE--------IKGILHTIN 252
Query: 527 QGVSNVAPADAPLRLLSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTL 584
+S+V D +++ R I + + L+F I+P AFFQ N+
Sbjct: 253 DTLSDVVQVDKL-----------------EILYGRDYIIEELLGLKFKIAPEAFFQTNSK 295
Query: 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAE 644
AEKLYS+ D+ ++FD+ CGTGTIG +A + VIG+E+ AV A+ NA+
Sbjct: 296 GAEKLYSIVKDFLGDASSKVVFDLYCGTGTIGQIVAPKAKKVIGVELIEEAVKAANENAK 355
Query: 645 INGIKNCRFVCAKAEDVM 662
+NG+ NC F+ V+
Sbjct: 356 LNGLNNCEFIAGDVAKVI 373
>gi|430825526|ref|ZP_19443730.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0164]
gi|430445991|gb|ELA55690.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0164]
Length = 457
Score = 99.0 bits (245), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 109/409 (26%), Positives = 165/409 (40%), Gaps = 83/409 (20%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLK-VKS---ARDVVTPLAHMSYSVQL 316
E+A+PGE E G++ G G E + V++ R + PLAH+ Y QL
Sbjct: 38 ENALPGEEVEILVVKAGNKFGYGKVETFITQSPDRQPVENNALLRTGIAPLAHLKYEQQL 97
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K+ + ++ K I K E+ LP +G GYRNK
Sbjct: 98 VFKQKQVEHVMAK------------------IAKMPEVPVLPT-----VGMAEPFGYRNK 134
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + V + + P + + A K + ++ LQ+ +
Sbjct: 135 AQIPVR-RIDGQLATGFYKKNSHDLVPIEDFYIQDPVIDQ-AIK---VVRDILQRFQVRG 189
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
+N KN G R + +R G + S M++ V+
Sbjct: 190 YNEEKNEGQLRHIIIRRG-------------------HYSHEMMVVLVT----------- 219
Query: 497 EFERLAKAFAAG--ATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLLSIPKADGEPEE 553
R K F + A A LP VIQ+ ++ +NV D L
Sbjct: 220 ---RKEKFFKSKEIAEAIHEELPEVVSVIQNINEEKTNVILGDKEKVLYG---------- 266
Query: 554 SNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTG 613
D +E D + + IS +F+QVNT AE LY ++A+L ++ D G G
Sbjct: 267 -RDYIE----DQLLGKTYRISAKSFYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIG 321
Query: 614 TIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
TIGL+LA RV V G+E+ A+ DA NA N I+N + KAE VM
Sbjct: 322 TIGLSLADRVDKVYGMEVTPEAIEDAQFNALNNKIENVHYEVGKAEKVM 370
>gi|269120866|ref|YP_003309043.1| RNA methyltransferase, TrmA family [Sebaldella termitidis ATCC
33386]
gi|268614744|gb|ACZ09112.1| RNA methyltransferase, TrmA family [Sebaldella termitidis ATCC
33386]
Length = 456
Score = 99.0 bits (245), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 91/362 (25%), Positives = 151/362 (41%), Gaps = 83/362 (22%)
Query: 309 HMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG-- 366
H+SY+ QLE K I ++ GG E LG
Sbjct: 85 HLSYNDQLELKTGQIRELF---------------------------GGKQIDFENFLGIV 117
Query: 367 -SPLVNGYRNKCEFSVGYSLQAKP-TVGF-MLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
+ GYRNK E + G + + P T+G G+F + +T DC + E K +
Sbjct: 118 PAKQQFGYRNKMELTFGNAEKDGPLTLGLHKRGSFYDIITIR----DCKLMDEDFNKITN 173
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
+F ++ +L +++ K++GF R L +R+G G+ +LI
Sbjct: 174 FTIDFFKKENLSFYHKMKHTGFLRNLVIRKGEFTGE-------------------LLINL 214
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLS 543
++++ D + + G + S + L+ + +S+ +++ L
Sbjct: 215 ITTSQSDYDM---------NEWRNGILSLELSKKIIGLLWTINDNISDAVNSESEKILYG 265
Query: 544 IPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDT 603
E H+ + F ISP +FFQ N+ AE LYS ++ D
Sbjct: 266 ---------------EKDFHEKLLGHDFKISPYSFFQTNSSGAELLYSKVLEFLPDTEDK 310
Query: 604 LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCA----KAE 659
++FD+ GTGTIG ++ V GIE+ AV A+ NAE+N IKNC+F+ KAE
Sbjct: 311 IIFDLFSGTGTIGQIVSKNARYVYGIELVEEAVEKANENAELNNIKNCKFIAGDVFKKAE 370
Query: 660 DV 661
++
Sbjct: 371 EL 372
>gi|297587406|ref|ZP_06946051.1| 23S rRNA (uracil-5-)-methyltransferase [Finegoldia magna ATCC
53516]
gi|297575387|gb|EFH94106.1| 23S rRNA (uracil-5-)-methyltransferase [Finegoldia magna ATCC
53516]
Length = 442
Score = 99.0 bits (245), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 132/301 (43%), Gaps = 58/301 (19%)
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLG-NFREGVTAVEEPVDCPNVSEIACKYASIF 425
SP++ GYRNK E++ G S++ P V LG + + + + VDC + E K
Sbjct: 113 SPILQGYRNKMEYTFGDSVKGGPLV---LGLHTKNKFYEITDTVDCNIIDEGFNKIRQAV 169
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
QE+ + + + + K++G R +R+ S E M+ +
Sbjct: 170 QEYFRDKNYEFFKKIKHTGLLRHFIIRKSFSE------------------DEYMINLVTT 211
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
S FD VN +F AK + ++ + +S+ D L LL
Sbjct: 212 SDEFD---VN-DFVEFAKQIDNRIVSIYHTI---------NDNISDAVIVDK-LELLY-- 255
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYS----LGGDWADLGP 601
+ + + I+ L F ISP +FFQ N AE++Y+ L GD + G
Sbjct: 256 ------------GKEYLTEKINGLEFRISPFSFFQPNPAQAEQIYNRALELAGDLS--GK 301
Query: 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661
+ ++D+ CGTGTI A + VIG+E+ A AV A NAE+NG+ N F+C +
Sbjct: 302 N--VYDLYCGTGTIAQIFAKKAESVIGVEIVAEAVEKAQENAELNGLTNTEFICDDCLNF 359
Query: 662 M 662
M
Sbjct: 360 M 360
>gi|342218738|ref|ZP_08711342.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera sp. UPII
135-E]
gi|341588866|gb|EGS32238.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera sp. UPII
135-E]
Length = 491
Score = 99.0 bits (245), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 87/308 (28%), Positives = 134/308 (43%), Gaps = 49/308 (15%)
Query: 365 LGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASI 424
LG+ YRNK +F VG K T+ +G F V +C E + +
Sbjct: 65 LGAATPWNYRNKMQFPVGED--KKNTLS--IGCFAAATHNVINVENCAIQKEENNQIVRV 120
Query: 425 FQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQV 484
+++++ +P ++ K +G R + R G G E+ + V E +
Sbjct: 121 VRQWMKDFKIPAYDEDKCTGMIRHIMGRVGVKTG--------EIMVCIVTACECI----- 167
Query: 485 SSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSI 544
+ RL + PSL T+++ + G +NV L
Sbjct: 168 -------PHIKELIRRLRQEI--------PSL--TSVIQNINTGHTNVILGRKTRTLYG- 209
Query: 545 PKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTL 604
+ IHD+I NLRF IS +FFQVN+ A++LY ++ADL + +
Sbjct: 210 --------------QDTIHDAIGNLRFHISAQSFFQVNSEQAQRLYEKALEFADLKGNEI 255
Query: 605 LFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664
+ DV CGTGTI L LA + V GIE+ SA+ DA RNA N +KN F+ A +
Sbjct: 256 VADVYCGTGTITLFLAQKAKQVYGIEIVPSAIKDAIRNARDNHVKNAEFILGDAVYKLPE 315
Query: 665 LLKDYLNP 672
L+K+ + P
Sbjct: 316 LIKNGVRP 323
>gi|410729405|ref|ZP_11367483.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp.
Maddingley MBC34-26]
gi|410595706|gb|EKQ50401.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp.
Maddingley MBC34-26]
Length = 457
Score = 99.0 bits (245), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 94/370 (25%), Positives = 153/370 (41%), Gaps = 78/370 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGI-L 365
L H+SY QL+ K N + +++ I GL K+ +
Sbjct: 83 LMHLSYEGQLDFKYNRVKDCIER------------------------IAGLDGKIVKYPI 118
Query: 366 GSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF 425
G YRNK FSVG S + + ++GF F E + C + + + I
Sbjct: 119 GMKNPYRYRNKAIFSVG-SKENELSIGF----FSEKTHEIVNVNSCQIQDKASDRIIEII 173
Query: 426 QEFLQQSDLPVWNR---FKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIA 482
+ ++ ++ + + F G R + +R+G +EVM++
Sbjct: 174 RSWMMKNAIASAKKDGVFFEQGLIRNIMIRKG------------------FKTNEVMVVL 215
Query: 483 QVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLL 542
T D + E E ++K + + L +L+ + +NV D + L
Sbjct: 216 ----VTTDKEIPYKE-ELISKL-------KNEIINLKSLIQNINNKDTNVVLGDKNITLW 263
Query: 543 SIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPD 602
+ I D I +F ISP +FFQVN + E LY ++ADL D
Sbjct: 264 G---------------QDYISDYIGQYKFNISPLSFFQVNPIQTEILYGKALEYADLNGD 308
Query: 603 TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
++FD CGTGTI L L+ + V G+E+ A+ DA NA N I N +F K+E+V+
Sbjct: 309 EIVFDAYCGTGTITLFLSQKAKKVYGVEIVDQAIEDAVNNARANTINNSKFYVGKSEEVI 368
Query: 663 GSLLKDYLNP 672
L+K+ + P
Sbjct: 369 PRLIKEGIKP 378
>gi|290968456|ref|ZP_06559995.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera genomosp.
type_1 str. 28L]
gi|290781452|gb|EFD94041.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera genomosp.
type_1 str. 28L]
Length = 460
Score = 99.0 bits (245), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 132/308 (42%), Gaps = 49/308 (15%)
Query: 365 LGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASI 424
LG+ YRNK +F VG K T+ +G F V +C E + I
Sbjct: 125 LGAATPWNYRNKMQFPVGED--KKNTLS--IGCFAAATHNVINVENCVIQKEENNQIVRI 180
Query: 425 FQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQV 484
+++++ +P ++ K +G R + R G G E+ + V E +
Sbjct: 181 VRQWMKDFKIPAYDEDKCTGMIRHIMGRVGVKTG--------EIMVCIVTACECI----- 227
Query: 485 SSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSI 544
+ RL + LTA++ + G +NV L
Sbjct: 228 -------PHIKDLIRRLRQEIPG----------LTAVIQNINTGHTNVILGRKTRTLYG- 269
Query: 545 PKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTL 604
+ IHD+I NLRF IS +FFQVN+ A++LY ++ADL + +
Sbjct: 270 --------------QDTIHDAIGNLRFHISAQSFFQVNSEQAQRLYEKAMEFADLKGNEI 315
Query: 605 LFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664
+ DV CGTGTI L LA + V GIE+ SA+ DA RNA N IKN F+ A +
Sbjct: 316 VADVYCGTGTITLFLAQKAKQVYGIEIVPSAIKDAIRNARDNHIKNAEFILGDAVYKLPE 375
Query: 665 LLKDYLNP 672
L+K+ + P
Sbjct: 376 LIKNGVRP 383
>gi|306820595|ref|ZP_07454224.1| 23S rRNA (uracil-5-)-methyltransferase [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551326|gb|EFM39288.1| 23S rRNA (uracil-5-)-methyltransferase [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 452
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 91/362 (25%), Positives = 158/362 (43%), Gaps = 75/362 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
+ +SY+ QL+ KK+ + Q KLTR + P K ++ G+
Sbjct: 83 ILDISYNNQLKIKKDMVFQ---KLTRIGKIDNP----------KINDVVGM--------D 121
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVG-FMLGNFREGVTAVEEPVDCPNVSEIACKYASIF 425
SP YRNK + VG T+G +G +R+ + DC EI + +
Sbjct: 122 SPF--RYRNKVQLPVG------GTIGDVKIGFYRQKTHDIIPFKDCIIQDEINNEIIKMI 173
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
+ ++ + + +N ++G R + + S++MLI
Sbjct: 174 KNYMSFAKIIPYNEKDSTGVLRHIVTKISNDK------------------SQIMLIL--- 212
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
V N++ ++L ++ + +L +T+++ ++ +NV I
Sbjct: 213 -------VTNTD-KKLDISYLVEEIKKN-NLNITSIIQNINKKNTNV-----------IL 252
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
+D ND + I D L+F I P +FFQVN EK+Y+ D+A + D ++
Sbjct: 253 SSDNILLYGNDYITEYIDD----LKFKIYPNSFFQVNYTQMEKMYNKALDYASIDKDDVV 308
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
+D+ CG GTI L LA R V GIE+ +++ A NA N I+N F+C K E+ + +L
Sbjct: 309 YDLYCGIGTISLLLAKRAKYVYGIEVVQQSITSAKENARENNIENVEFICGKVENEIKAL 368
Query: 666 LK 667
+K
Sbjct: 369 IK 370
>gi|397905381|ref|ZP_10506237.1| RNA methyltransferase, TrmA family [Caloramator australicus RC3]
gi|397161446|emb|CCJ33571.1| RNA methyltransferase, TrmA family [Caloramator australicus RC3]
Length = 481
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 86/366 (23%), Positives = 153/366 (41%), Gaps = 73/366 (19%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
+ HM+Y QLE K+ + ++ ++ + N + + +
Sbjct: 110 IQHMTYEGQLEFKRERVEDVINRIGKITNVKIHNTIGMEK-------------------- 149
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
PL YRNK + V + +GF F++G V + +C EIA K ++ +
Sbjct: 150 -PL--RYRNKVQLPVRRE-NGEVKIGF----FKQGTHDVIDVRECFIQDEIADKVVNLTR 201
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
E++ + ++ ++ SG R + +R+ + G EVM++
Sbjct: 202 EWINKYNIEPYDETNGSGIVRHIMIRKAFATG------------------EVMVVI---- 239
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
V N E + F + L ++V + ++NV + + L
Sbjct: 240 ------VTNGEKLPFKEEFIDLMVKNIDGLK--SIVQNINSKITNVILGEKNILLWG--- 288
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
+ I D I +F IS +FFQVN + LY+ ++A+L D ++F
Sbjct: 289 ------------QDYITDYIGKFKFRISQLSFFQVNPVQTNVLYNKALEYANLSGDEIVF 336
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
D CGTGTI L LA R V G+E+ A+ +A NA N ++N F+ K+E+V+ L+
Sbjct: 337 DAYCGTGTISLFLAQRAKKVYGVEIVEEAIKNARENARENDMQNVEFIVGKSEEVIPKLI 396
Query: 667 KDYLNP 672
+ + P
Sbjct: 397 EKGIIP 402
>gi|167760785|ref|ZP_02432912.1| hypothetical protein CLOSCI_03170 [Clostridium scindens ATCC 35704]
gi|167661672|gb|EDS05802.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium scindens
ATCC 35704]
Length = 567
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/321 (26%), Positives = 138/321 (42%), Gaps = 55/321 (17%)
Query: 354 IGGLPCK-----LEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEP 408
IG +P + LE I+G YRNK +F +G + GF G ++
Sbjct: 108 IGEVPAEVLDQALEPIVGMDNPFHYRNKAQFPIGTDNEGHIITGFYAGR----THSIIPN 163
Query: 409 VDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEV 468
DC E+ F+++ + ++ ++ G R + +R G
Sbjct: 164 TDCALGVEVNEVILKQILTFMEEYKISAYDETEHKGLVRHVLIRYGFVT----------- 212
Query: 469 NISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQG 528
E+M+ ++ + +E RLAK +T++ + ++
Sbjct: 213 -------KEIMVCLVINGNHLPHGEILAE--RLAKIEG-----------MTSITLSINKE 252
Query: 529 VSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEK 588
+NV I + EP + I D I+N+++ ISP +F+QVN + EK
Sbjct: 253 KTNV-----------IMGSKIEPLWG----KTYITDYIANVKYQISPLSFYQVNPVQTEK 297
Query: 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI 648
LY L ++A L ++D+ CG GTI L LA + V G+E+ A+ DA NA+INGI
Sbjct: 298 LYGLALEYAGLTGKETVWDLYCGIGTISLFLAQKAKEVYGVEIVPQAIEDASNNAKINGI 357
Query: 649 KNCRFVCAKAEDVMGSLLKDY 669
+N RF KAE+V+ Y
Sbjct: 358 ENARFYVGKAEEVLPEYYAQY 378
>gi|420156335|ref|ZP_14663178.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. MSTE9]
gi|394757633|gb|EJF40650.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. MSTE9]
Length = 459
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 91/366 (24%), Positives = 154/366 (42%), Gaps = 76/366 (20%)
Query: 309 HMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSP 368
H++Y+ +L K+N + ++++ G+ P+ + I+G+
Sbjct: 86 HITYAGELRAKENRVRDAIERI---------GGLQNPD--------------IRPIVGAE 122
Query: 369 LVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEF 428
+GYRNK + +G Q GF N + E P E A F E+
Sbjct: 123 HADGYRNKAQIPIGQDKQGNLIAGFY-ANHSHRIVQCERCALQPKPFEQAL---DTFLEW 178
Query: 429 LQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSAT 488
++S ++ + G R L +R G EVM+ V+
Sbjct: 179 ARKSGESAYDETTHKGKLRHLYLRMAEGTG------------------EVMVCVVVNGNG 220
Query: 489 F--DDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
+D++ ER+ L +++I ++ +NV R ++
Sbjct: 221 LKGEDSLAALLRERVDG--------------LKSVLINSNREDTNVVLGR---RFRTVWG 263
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
D + D + L+F ISP +F+QVN A++LY+L G++A L +
Sbjct: 264 QD------------FLTDRMCGLQFRISPLSFYQVNHAQAQRLYALAGEYAGLTGKETVL 311
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
D+ CGTGTIGL++A R G VIG+E A AV +A NA +N I+N F+C A + L+
Sbjct: 312 DLYCGTGTIGLSMAGRAGRVIGVEAVAQAVENARENAALNNIENAEFLCMDAAEAAQLLV 371
Query: 667 KDYLNP 672
+ +P
Sbjct: 372 QRGEHP 377
>gi|418636768|ref|ZP_13199107.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
lugdunensis VCU139]
gi|374840464|gb|EHS03957.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
lugdunensis VCU139]
Length = 461
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 85/366 (23%), Positives = 147/366 (40%), Gaps = 72/366 (19%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L HMSY QL KK + + + + + + + P +
Sbjct: 90 LQHMSYEAQLAMKKEQVVNLFHRKGQFTDTVINDTIGMDN-----------PWR------ 132
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
YRNK + +G +G+ +R+ + + C + + +
Sbjct: 133 ------YRNKSQVPIGQDKMNHKIMGY----YRQRSHDIIDMDSCLIQDKQHQDIMNHVK 182
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
+++ + + ++N G R L +R G E+M+I +
Sbjct: 183 KWINEYHISIYNERTKKGVLRHLVIRTGHYT------------------DEIMVIFVTNG 224
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
+ F A N E+L +AF P++ T++ + SNV + L
Sbjct: 225 SKFKHA--NMLVEQLKQAF--------PNI--TSIKQNINNSHSNVIMGQQSVTLYG--- 269
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
+ +I D +S++ F IS +F+Q+N+ EKLY D+A L ++
Sbjct: 270 ------------KDKIVDQLSDITFKISDQSFYQINSSQTEKLYQKAIDYAQLDGQEIVL 317
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
D CG GTIGL +A V G+E+ SA+ DA +NA +N + N FVC KAEDV+
Sbjct: 318 DTYCGIGTIGLYMAPVAKHVYGVEVVPSAIKDARQNALVNDLHNTTFVCGKAEDVIMDWQ 377
Query: 667 KDYLNP 672
++ + P
Sbjct: 378 REGIQP 383
>gi|417917757|ref|ZP_12561316.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
parasanguinis SK236]
gi|342830394|gb|EGU64733.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
parasanguinis SK236]
Length = 451
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 107/417 (25%), Positives = 167/417 (40%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDG----SGLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGE+ + G G E L + R + L H++Y QL
Sbjct: 33 ENALPGEVIRMRVLKVNKKIGYGKVEEYLEKSPHRNEELDLAYLRSGIADLGHLAYPEQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K + L K+ G+S E +P L + P+ YRNK
Sbjct: 93 KFKAKQVKDSLYKMA---------GISDIE----------VPLTLG--MDHPV--QYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + + + + P + ++ + + F DL
Sbjct: 130 AQVPVR-RVNGQVETGFFRKNSHDLMPIEDFYIQDPVIDQVVLALRDLIRRF----DLKP 184
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS-ATFDDAVVN 495
++ + SG R L +R G G E+M+I + F V+
Sbjct: 185 YDEKEQSGLIRNLVIRRGHHSG------------------EIMVILVTTRPKVFR---VD 223
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
E+L K F P V+Q+ + A RLL G+
Sbjct: 224 QLIEQLIKQF-----------PAIKSVMQNINDQNTNAIFGKEWRLLY-----GQD---- 263
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
I D + F IS AF+QVNT AEKLY D+A+L + ++ D G GTI
Sbjct: 264 -----YITDQMLGNSFQISGPAFYQVNTEMAEKLYQTAIDFANLRAEDIVIDAYSGIGTI 318
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL++A V V G+E+ AV ++ +NA +NGI N +VC AE+ M + LK+ + P
Sbjct: 319 GLSVAKHVKEVYGVEVIPEAVENSQKNASLNGISNAHYVCDTAENAMKNWLKEGIQP 375
>gi|450179949|ref|ZP_21886909.1| putative RNA methyltransferase [Streptococcus mutans 24]
gi|449248671|gb|EMC46902.1| putative RNA methyltransferase [Streptococcus mutans 24]
Length = 451
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 94/369 (25%), Positives = 149/369 (40%), Gaps = 73/369 (19%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ L H++Y QL K+ + L K+ G+S ++
Sbjct: 80 IADLGHLTYGQQLNFKRKQVINSLSKIA---------GIS--------------DIEVAD 116
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
LG YRNK + V + + GF FR+ A+ D + + +
Sbjct: 117 TLGMDNPTAYRNKAQVPVR-RVNGQLETGF----FRKNSHALMPIEDYYIQDKEIDRLIN 171
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
++ L++ DL ++ + +G R L VR G G+ + +++
Sbjct: 172 FTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYTGQIM-----------------LVLVT 214
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLS 543
S F + E++ F P +IQ+ + A + R L
Sbjct: 215 TRSKIFR---IEQMVEKIVSEF-----------PAVKSIIQNINDRNTNAIFGSEFRTLY 260
Query: 544 IPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDT 603
GE D +E D + R+ IS +F+QVNT+ AEKLY D++DL PD
Sbjct: 261 -----GE-----DTIE----DIMLGNRYIISAQSFYQVNTVMAEKLYQTAIDFSDLTPDD 306
Query: 604 LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMG 663
+ D G GTIGL+ A +V V G+E+ +AV DA +NA +N I N +V AE M
Sbjct: 307 TVIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYVADSAEKAMA 366
Query: 664 SLLKDYLNP 672
S K + P
Sbjct: 367 SWSKRGIKP 375
>gi|224369754|ref|YP_002603918.1| protein TrmA [Desulfobacterium autotrophicum HRM2]
gi|223692471|gb|ACN15754.1| TrmA [Desulfobacterium autotrophicum HRM2]
Length = 462
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 99/365 (27%), Positives = 153/365 (41%), Gaps = 77/365 (21%)
Query: 310 MSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPL 369
++Y QLE+K+ + + L+ + ++K E+ LP ++ S
Sbjct: 87 LAYETQLEYKQRHVTESLEHIG----------------LLKDVEV--LP-----VIPSRK 123
Query: 370 VNGYRNKCEFSVGYSLQAKP--------TVGFMLGNFREGVTAVEEPVD-CPNVSEIACK 420
+ G+RNK EFS S P GF LG G +D C + +
Sbjct: 124 IFGFRNKMEFSCTTSRWLMPEDLENPDIKKGFGLGLHVPGTFDRIIDIDKCLIQPDTGNQ 183
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
+ ++++ +S +P + + GFWR L +R + N VNI
Sbjct: 184 IMQVVRQYIVESGVPAYGLRSHEGFWRFLMLRSSSA-----------FNTWMVNI----- 227
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
V+S +DA++ E L F + + V+NV A
Sbjct: 228 ---VTSEE-NDALLIPLAEHLKNMFPSIVSI-----------------VNNVTAKKA--- 263
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
I D E + E I + + F IS +FFQ NT AE+LYSL ++ADL
Sbjct: 264 --GIATGDYEKLLAG---EQFIREKLGRFTFEISANSFFQTNTAGAEQLYSLVSEYADLT 318
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
+ + D+ GTGTI + L+ R V+GIE+ SAV DA +NA +N I NC F +D
Sbjct: 319 GNETVVDLYSGTGTIPIWLSDRAKKVVGIEIVESAVVDAKKNAALNQIDNCEFFVGDIKD 378
Query: 661 VMGSL 665
V+ L
Sbjct: 379 VLPQL 383
>gi|449876754|ref|ZP_21782937.1| putative RNA methyltransferase [Streptococcus mutans S1B]
gi|449915243|ref|ZP_21796133.1| putative RNA methyltransferase [Streptococcus mutans 15JP3]
gi|449976316|ref|ZP_21816164.1| putative RNA methyltransferase [Streptococcus mutans 11VS1]
gi|450040080|ref|ZP_21836590.1| putative RNA methyltransferase [Streptococcus mutans T4]
gi|450045808|ref|ZP_21838615.1| putative RNA methyltransferase [Streptococcus mutans N34]
gi|450077258|ref|ZP_21850329.1| putative RNA methyltransferase [Streptococcus mutans N3209]
gi|450115688|ref|ZP_21864059.1| putative RNA methyltransferase [Streptococcus mutans ST1]
gi|449156709|gb|EMB60168.1| putative RNA methyltransferase [Streptococcus mutans 15JP3]
gi|449175714|gb|EMB78106.1| putative RNA methyltransferase [Streptococcus mutans 11VS1]
gi|449199534|gb|EMC00595.1| putative RNA methyltransferase [Streptococcus mutans T4]
gi|449199861|gb|EMC00913.1| putative RNA methyltransferase [Streptococcus mutans N34]
gi|449211448|gb|EMC11852.1| putative RNA methyltransferase [Streptococcus mutans N3209]
gi|449227774|gb|EMC27177.1| putative RNA methyltransferase [Streptococcus mutans ST1]
gi|449251858|gb|EMC49857.1| putative RNA methyltransferase [Streptococcus mutans S1B]
Length = 451
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 96/378 (25%), Positives = 152/378 (40%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L V R + L H++Y QL K+ + L K+ G+S
Sbjct: 71 LTVDYLRTGIADLGHLTYGQQLNFKRKQVINSLSKIA---------GIS----------- 110
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
++ LG YRNK + V + + GF FR+ A+ D
Sbjct: 111 ---DIEVADTLGMDNPTAYRNKAQVPVR-RVNGQLETGF----FRKNSHALMPIEDYYIQ 162
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+ + + ++ L++ DL ++ + +G R L VR G G+ +
Sbjct: 163 DKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYTGQIM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++ S F + E++ F P +IQ+ + A
Sbjct: 210 ----LVLVTTRSKIFR---IEQMIEKIVSEF-----------PAVKSIIQNINDRNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
+ R L GE D +E D++ + IS +F+QVNT+ AEKLY
Sbjct: 252 FGSEFRTLY-----GE-----DTIE----DTMLGNCYIISAQSFYQVNTVMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D++DL PD + D G GTIGL+ A +V V G+E+ +AV DA +NA +N I N +V
Sbjct: 298 DFSDLAPDDTVIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
AE M S K + P
Sbjct: 358 ADSAEKAMASWSKRGIKP 375
>gi|374297936|ref|YP_005048127.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
clariflavum DSM 19732]
gi|359827430|gb|AEV70203.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
clariflavum DSM 19732]
Length = 456
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 92/362 (25%), Positives = 150/362 (41%), Gaps = 85/362 (23%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLP-CKLEGIL 365
L HMSY L+ K + + T N R+ IGGL + +
Sbjct: 85 LQHMSYDATLKFKTDLV-------TENIRR-----------------IGGLQGVVVHDTI 120
Query: 366 GSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTA---VEEPVDCPNVSEIACKYA 422
G YRNK +F VG + + VGF + V + + + DC K
Sbjct: 121 GMDNPFNYRNKAQFPVGIQ-RGELVVGFYAKRSHDIVNSHMCLIQHSDCD-------KAK 172
Query: 423 SIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIA 482
I + FL+++ + +++ G R + R G G E+M++
Sbjct: 173 LIVKRFLEENKISIYDETTGKGLVRHIMTRVGFKTG------------------EMMVVL 214
Query: 483 QVSSATF--DDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
++ T D +V +RL TA P + ++V+ + +NV +
Sbjct: 215 VINGNTLPKQDLLV----KRL--------TAEMPQIK--SIVLNINTANTNVILGSKNIV 260
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
L E I D I N +F ISP +F+QVN + E LY+ ++A L
Sbjct: 261 LFG---------------EENITDYIGNFKFKISPLSFYQVNPVQTELLYNKALEYAGLT 305
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
+ +FD+ CG GTI L L+ + V G+E+ A+ DA NA++NG+ N F+ +AE
Sbjct: 306 GEETVFDLYCGIGTISLFLSQKAKKVYGVEVVEDAIRDAQENAKLNGVDNVEFIVGEAEK 365
Query: 661 VM 662
++
Sbjct: 366 II 367
>gi|440293794|gb|ELP86853.1| RNA m5u methyltransferase, putative [Entamoeba invadens IP1]
Length = 543
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/313 (25%), Positives = 134/313 (42%), Gaps = 61/313 (19%)
Query: 361 LEGILGSPLVNGYRNKCEFSVGYSLQA-KPTVGF-MLGNFREGVTAVEEPVDCPNVSEIA 418
EGIL SP+ GYRN+ +F+ G ++ + G +G++ +T DC V E
Sbjct: 202 FEGILPSPVTIGYRNRMDFTFGDRMKGGELECGLHKMGHYNSTITVD----DCRIVDEDF 257
Query: 419 CKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEV 478
++ ++ + +++ ++ G R L VR+ G E + V I+ +S
Sbjct: 258 ITILKFNVDYFRRLHVDFYHKKEHKGVLRNLIVRKAMKTG-----EIMCVLITTTQMS-- 310
Query: 479 MLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAP 538
+ + A++N + +
Sbjct: 311 -----IDEEQYKTALLNLKLK-------------------------------------GT 328
Query: 539 LRLLSIPKADGEPEE---SNDVV---EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSL 592
LR + D + +E D+V I++ + L F ISP FFQ N+L AE LYS
Sbjct: 329 LRSIIHTLYDSQIDECGSEKDIVLYGNTYINEELLGLHFKISPLTFFQTNSLGAEVLYSK 388
Query: 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCR 652
++ P+ +FD+ CGTGTI LA + G+E+ AV DA +NAE+N +KNC+
Sbjct: 389 VREFIQSTPNDTVFDLYCGTGTITQILAPVCKEITGVEIVERAVEDARKNAELNKLKNCK 448
Query: 653 FVCAKAEDVMGSL 665
F+ V+ SL
Sbjct: 449 FIAGDVLKVLDSL 461
>gi|418069636|ref|ZP_12706913.1| tRNA (uracil-5-)-methyltransferase related enzyme [Pediococcus
acidilactici MA18/5M]
gi|357536167|gb|EHJ20198.1| tRNA (uracil-5-)-methyltransferase related enzyme [Pediococcus
acidilactici MA18/5M]
Length = 455
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 94/378 (24%), Positives = 148/378 (39%), Gaps = 93/378 (24%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ PL H++Y QL+ K+ I +L+K S E I + +G
Sbjct: 85 IAPLQHIAYPAQLKFKQTQIKNLLQK-------------SHLEQIEVAETVG-------- 123
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
+ +P GYRNK + V ++ + GF + V + + P + ++ K
Sbjct: 124 -MENP--TGYRNKAQVPVR-KVKGQLATGFFKRGSHDLVPIEDFYIQDPVIDQVILKVRD 179
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
I +E+ + ++ G R + VR GR G+ + V+LI +
Sbjct: 180 ILREY----QIEPYDEINQRGVVRNIMVRRGRRSGEIM----------------VVLITR 219
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLS 543
SS + D + A I GV +V
Sbjct: 220 TSSVSHLDEI--------------------------AAAIHQIDGVVSVI---------- 243
Query: 544 IPKADGEPEESNDVV---------EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
+ P+++N ++ E+ IHD + +F IS +F+QVN + EKLY L
Sbjct: 244 ---QNINPKQTNVIMGKEDRLLAGESVIHDELLGQKFIISAHSFYQVNPVQTEKLYQLAI 300
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
+ A L + DV G GTI L +A V G+E+ AV DA NA N KN +FV
Sbjct: 301 EKAGLTGKETVLDVYSGIGTISLAMAQAAKKVYGVEIVKEAVQDAKVNAVQNQAKNVKFV 360
Query: 655 CAKAEDVMGSLLKDYLNP 672
KAED M + + P
Sbjct: 361 VGKAEDQMAKWQAEGMQP 378
>gi|260437712|ref|ZP_05791528.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Butyrivibrio crossotus
DSM 2876]
gi|292809735|gb|EFF68940.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Butyrivibrio crossotus
DSM 2876]
Length = 461
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 88/356 (24%), Positives = 150/356 (42%), Gaps = 68/356 (19%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L MSY QLE K++ I L R +G+ +P ++G
Sbjct: 84 LMAMSYERQLEFKRHLIENNL------IRIGGLSGIEVPP-----------------VIG 120
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
YRNK +F VG +GF G ++ DC S+I + +
Sbjct: 121 MDNPYRYRNKAQFPVGTDKDGNIVMGFYAGR----THSIIPNEDCLIGSDINAGILAEIK 176
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
F+ + + ++ +SG R + +R G + G+ + V ++ S+
Sbjct: 177 AFMIMNHIKSYDENSHSGLVRHILIRTGFTTGQIM----------------VCVVINGSN 220
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
+D +V + LA +F S + ++++ ++ +NV L P
Sbjct: 221 IPKEDELVK---KLLALSF-------SNERKIASIMVNINREKTNVILGKKCRVLYGTP- 269
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
I D I +++ I P +F+QVN + EKLY++ D+A L + ++
Sbjct: 270 --------------YIEDYIGEVKYRIQPLSFYQVNPVQTEKLYNIALDYAGLTGNETVW 315
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
D+ CG GTI L LA + V G+E+ A+ DA NA++NGI N F KAE+++
Sbjct: 316 DLYCGIGTISLFLAKKAKKVYGVEIVPEAIEDAVTNAKLNGIDNAEFYVGKAEEIL 371
>gi|302390099|ref|YP_003825920.1| 23S rRNA m(5)U-1939 methyltransferase [Thermosediminibacter oceani
DSM 16646]
gi|302200727|gb|ADL08297.1| 23S rRNA m(5)U-1939 methyltransferase [Thermosediminibacter oceani
DSM 16646]
Length = 450
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 92/363 (25%), Positives = 152/363 (41%), Gaps = 78/363 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H+SY QLE K + L++ IG + + +G
Sbjct: 83 LQHLSYKGQLEFKTQKVRDSLER------------------------IGRIYTTVFDTIG 118
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVD-CPNVSEIACKYASIF 425
YRNK ++ VG +P +GF + + V P++ C E++ + A +
Sbjct: 119 MEDPWKYRNKAQYPVGKK-DYRPALGFYMKRSHDLV-----PIEGCLIQHELSWRAAEVV 172
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEV-NISEVMLIAQV 484
++++++ + +++ + G R + R G G+ + V L +N EV ++ E++
Sbjct: 173 RDWMEKFRVSIYDEINHKGLIRHVVTRIGAKTGEVMVV--LVINGREVPHLRELL----- 225
Query: 485 SSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSI 544
+ E L + T + NV D + +
Sbjct: 226 -------GALEKNVEGLKSVYLNVNTKKT-----------------NVIMGDENILVY-- 259
Query: 545 PKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTL 604
GEP I D I ++F +SP +FFQVN + E LY ++A L +
Sbjct: 260 ----GEPH---------IIDFIGEIKFTLSPNSFFQVNPVQVEVLYKKVMEYAGLTGEET 306
Query: 605 LFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664
+ D CG GTI L LA + MV GIE+ AV DA NA +NGI+N F+ AE+VM
Sbjct: 307 VIDAYCGIGTITLFLAGKARMVYGIEVVPQAVMDARNNALLNGIENVEFIEGAAEEVMPQ 366
Query: 665 LLK 667
L++
Sbjct: 367 LVE 369
>gi|336434274|ref|ZP_08614071.1| hypothetical protein HMPREF0991_03190 [Lachnospiraceae bacterium
2_1_58FAA]
gi|336013956|gb|EGN43821.1| hypothetical protein HMPREF0991_03190 [Lachnospiraceae bacterium
2_1_58FAA]
Length = 559
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 129/306 (42%), Gaps = 47/306 (15%)
Query: 361 LEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTA-VEEPVDCPNVSEIAC 419
EG+ SP YRNK EFS G + P LG ++G T V DC V +
Sbjct: 115 FEGVKASPKEFAYRNKMEFSFGDEYKDGP---LTLGLHKKGSTYDVLTASDCKLVHDDMT 171
Query: 420 KYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVM 479
K + E+ ++ ++ + + +++G+ R L +R G G+ L NL E
Sbjct: 172 KILNCVLEYFKERNVSYYKKMQHTGYLRHLLLRRGDRTGEIL--VNLVTTTQE------- 222
Query: 480 LIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL 539
+ + +A++N E E F ++ D +S+V +D
Sbjct: 223 ---EHDMSPLKEALLNLELEGKIVGFLH--------------ILND--SLSDVVQSDETR 263
Query: 540 RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
+ + ++ + NL F I+P +FFQ N+ AE LYS D+
Sbjct: 264 IIYG---------------QDYFYEKLLNLEFKITPFSFFQPNSRGAEVLYSTVRDYIGD 308
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659
D +FD+ GTGTI LA VIG+E+ AV A NA NG+ NC+F+
Sbjct: 309 INDMTVFDLFSGTGTIAQVLAPVAKQVIGVEIIEEAVEAAKENAAHNGLSNCKFIAGDVF 368
Query: 660 DVMGSL 665
V+ +
Sbjct: 369 KVLDEI 374
>gi|339449412|ref|ZP_08652968.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
fructivorans KCTC 3543]
Length = 470
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 94/356 (26%), Positives = 144/356 (40%), Gaps = 70/356 (19%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L ++Y QLE K++ + Q L++ A R+ G+ E
Sbjct: 99 LEDLAYPKQLEFKRDLVKQSLRRYHPRAYDHY-----------DVRDTIGMDDPYE---- 143
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
YRNK +F V K G ++EG V + C + K
Sbjct: 144 ------YRNKAQFQVRTQADGKVIAGL----YKEGTHEVVDMETCSVQYPLTMKVMRALV 193
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
E +Q+ ++P + +SG + L VR +N ++V +V+ I
Sbjct: 194 EMIQELNIPTFVESNHSGILKTLVVRAA-------------LNTNDV---QVVFITNTPK 237
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
++ +RL P V+Q N+ P D+PL I
Sbjct: 238 LVKKHQLLEMIADRL---------------PEVTSVMQ------NINPGDSPL----IWG 272
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
ND I + I L F +SP AF Q+N++ KLY L G+ +L D L
Sbjct: 273 EKTVHLAGND----SITEKIDGLSFELSPRAFLQLNSIMTPKLYHLAGEALNLDSDDRLI 328
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
D G GTIGLTLA++V V G++ A++DA+ NA+IN I N ++ AED+M
Sbjct: 329 DAYSGVGTIGLTLANQVAEVRGMDTVQEAITDANHNAKINHIDNAQYYFGSAEDLM 384
>gi|320529040|ref|ZP_08030132.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas artemidis
F0399]
gi|320138670|gb|EFW30560.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas artemidis
F0399]
Length = 457
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 103/362 (28%), Positives = 145/362 (40%), Gaps = 76/362 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLP-CKLEGIL 365
L H+SY QL K+ Q++ +T IG LP ++ L
Sbjct: 88 LQHLSYEAQLTAKR---LQVVDAMT---------------------HIGKLPHVPVKETL 123
Query: 366 GSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF 425
G+ YRNK +F VG Q + ++G F +G + + DC E A+
Sbjct: 124 GAASPWNYRNKMQFPVGIH-QGQ----IVVGCFAQGSHRIIDTEDCHIQREGNNALANAV 178
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
++ + + +PV+N + G R + R G+ E+M + V+
Sbjct: 179 RDIVTKLRIPVYNEDTHRGILRHIVGRVGQG-------------------DELMAVI-VT 218
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
+A E R K LP + Q+ Q N LL
Sbjct: 219 AA--------KELPRKKKLI----RMMRERLPQLVSIQQNIQTYRNNVVMGRDTVLLW-- 264
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
G+P I D++ L F ISP +FFQVNT A LY +ADL +
Sbjct: 265 ---GKPT---------IRDTLGKLSFHISPRSFFQVNTAQAAVLYEQALQYADLHGTETV 312
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
D CGTGTI L LA R V GIE+ A+ DA +NA NGIKN F+ A VM SL
Sbjct: 313 IDAYCGTGTITLFLAQRARNVYGIEIVRPAILDARKNARDNGIKNAEFIVGDATAVMPSL 372
Query: 666 LK 667
+
Sbjct: 373 YR 374
>gi|304385359|ref|ZP_07367704.1| 23S rRNA (uracil-5-)-methyltransferase [Pediococcus acidilactici
DSM 20284]
gi|304328566|gb|EFL95787.1| 23S rRNA (uracil-5-)-methyltransferase [Pediococcus acidilactici
DSM 20284]
Length = 455
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 94/378 (24%), Positives = 148/378 (39%), Gaps = 93/378 (24%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ PL H++Y QL+ K+ I +L+K S E I + +G
Sbjct: 85 IAPLQHIAYPAQLKFKQTQIKNLLQK-------------SHLEQIEVAETVG-------- 123
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
+ +P GYRNK + V ++ + GF + V + + P + ++ K
Sbjct: 124 -MENP--TGYRNKAQVPVR-KVKGQLATGFFKRGSHDLVPIEDFYIQDPVIDQVILKVRD 179
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
I +E+ + ++ G R + VR GR G+ + V+LI +
Sbjct: 180 ILREY----QIEPYDEINQRGVVRNIMVRRGRRSGEIM----------------VVLITR 219
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLS 543
SS + D + A I GV +V
Sbjct: 220 TSSVSHLDEI--------------------------AAAIHQIDGVVSVI---------- 243
Query: 544 IPKADGEPEESNDVV---------EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
+ P+++N ++ E+ IHD + +F IS +F+QVN + EKLY L
Sbjct: 244 ---QNINPKQTNVIMGKEDRLLAGESVIHDELLGQKFIISAHSFYQVNPVQTEKLYQLAI 300
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
+ A L + DV G GTI L +A V G+E+ AV DA NA N KN +FV
Sbjct: 301 EKAGLTGKETVLDVYSGIGTISLAMAQAAKKVYGVEIVKEAVQDAKVNAVQNQAKNVKFV 360
Query: 655 CAKAEDVMGSLLKDYLNP 672
KAED M + + P
Sbjct: 361 VGKAEDQMAKWQAEGMQP 378
>gi|154506231|ref|ZP_02042969.1| hypothetical protein RUMGNA_03773 [Ruminococcus gnavus ATCC 29149]
gi|153793730|gb|EDN76150.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus gnavus
ATCC 29149]
Length = 559
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 129/306 (42%), Gaps = 47/306 (15%)
Query: 361 LEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTA-VEEPVDCPNVSEIAC 419
EG+ SP YRNK EFS G + P LG ++G T V DC V +
Sbjct: 115 FEGVKASPKEFAYRNKMEFSFGDEYKDGP---LTLGLHKKGSTYDVLTASDCKLVHDDMT 171
Query: 420 KYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVM 479
K + E+ ++ ++ + + +++G+ R L +R G G+ L NL E
Sbjct: 172 KILNCVLEYFKERNVSYYKKMQHTGYLRHLLLRRGDRTGEIL--VNLVTTTQE------- 222
Query: 480 LIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL 539
+ + +A++N E E F ++ D +S+V +D
Sbjct: 223 ---EHDMSPLKEALLNLELEGKIVGFLH--------------ILND--SLSDVVQSDETR 263
Query: 540 RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
+ + ++ + NL F I+P +FFQ N+ AE LYS D+
Sbjct: 264 IIYG---------------QDYFYEKLLNLEFKITPFSFFQPNSRGAEVLYSTVRDYIGD 308
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659
D +FD+ GTGTI LA VIG+E+ AV A NA NG+ NC+F+
Sbjct: 309 INDMTVFDLFSGTGTIAQVLAPVAKQVIGVEIIEEAVEAAKENAAHNGLSNCKFIAGDVF 368
Query: 660 DVMGSL 665
V+ +
Sbjct: 369 KVLDEI 374
>gi|270291082|ref|ZP_06197305.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pediococcus
acidilactici 7_4]
gi|270280478|gb|EFA26313.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pediococcus
acidilactici 7_4]
Length = 455
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 95/378 (25%), Positives = 147/378 (38%), Gaps = 93/378 (24%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ PL H++Y QL+ K+ I +L+K S E I + +G
Sbjct: 85 IAPLQHIAYPAQLKFKQTQIKNLLQK-------------SHLEQIEVAETVG-------- 123
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
+ +P GYRNK + V ++ + GF + V + + P + ++ K
Sbjct: 124 -MENP--TGYRNKAQVPVR-KVKGQLATGFFKRGSHDLVPIEDFYIQDPVIDQVILKVRD 179
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
I +E+ + ++ G R + VR GR G+ + V+LI +
Sbjct: 180 ILREY----QIEPYDEINQRGVVRNIMVRRGRRSGEIM----------------VVLITR 219
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLS 543
T+S P L A I GV +V
Sbjct: 220 --------------------------TSSVPHLDEIAEAIHQIDGVVSVI---------- 243
Query: 544 IPKADGEPEESNDVV---------EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
+ P+++N ++ E+ IHD + +F IS +F+QVN + EKLY L
Sbjct: 244 ---QNINPKQTNVIMGKEDRLLAGESVIHDELLGQKFIISAHSFYQVNPVQTEKLYQLAI 300
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
A L + DV G GTI L +A V G+E+ AV DA NA N KN +FV
Sbjct: 301 KKAGLTGKETVLDVYSGIGTISLAMAQAAKKVYGVEIVKEAVQDAKVNAVQNQAKNVKFV 360
Query: 655 CAKAEDVMGSLLKDYLNP 672
KAED M + + P
Sbjct: 361 VGKAEDQMAKWQAEGMQP 378
>gi|433654470|ref|YP_007298178.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433292659|gb|AGB18481.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 450
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 128/298 (42%), Gaps = 58/298 (19%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKPTVGFML-GNFREGVTAVEEPVDCPNVSEIACKY 421
GI+ SP YRNK E++ G +G + G F + VT DC V
Sbjct: 114 GIVRSPDAFLYRNKMEYTFGKDDNGISQLGLHVKGRFYDIVTTE----DCRIVDSDFITC 169
Query: 422 ASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVM-- 479
I ++ +Q LP +N + G+ R L +R+ + G EV I+ V S++
Sbjct: 170 LKIVLDYAKQHSLPHYNIKTHEGYMRYLVIRKAANTG--------EVIINVVTTSQIKHD 221
Query: 480 ---LIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPAD 536
L+ ++ S +N +F + + + LT L +D+
Sbjct: 222 FSKLVDELRSIK-----LNGKFIGILHTVNDSYSDAVKCEKLTVLYGRDY---------- 266
Query: 537 APLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDW 596
I + I L+F IS +FFQ N+ AEKLYS+ ++
Sbjct: 267 -------------------------IMEEILGLKFKISAFSFFQTNSKGAEKLYSIAREF 301
Query: 597 ADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
A + +LFD+ CGTGTIG+ +A VIG+E+ AV A NA +NG+ N +F+
Sbjct: 302 AGEISNKILFDLYCGTGTIGIIMAPLAKKVIGVELVEEAVDAARENARLNGLSNIQFI 359
>gi|187778559|ref|ZP_02995032.1| hypothetical protein CLOSPO_02154 [Clostridium sporogenes ATCC
15579]
gi|187772184|gb|EDU35986.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sporogenes
ATCC 15579]
Length = 451
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 129/304 (42%), Gaps = 47/304 (15%)
Query: 363 GILGSPLVNGYRNKCEFSVG-YSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKY 421
G+ SP YRNK EF+ G T+G + N + V+ +C V +
Sbjct: 114 GVEKSPEEYEYRNKMEFTFGDMEKGGDLTLGMHVKNRSFSIVTVD---NCEIVDKDFRSI 170
Query: 422 ASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLI 481
+ + + LP + + GF R L +R+ ++ G+ L VNI
Sbjct: 171 LTSVVNYFSKKGLPKYRVMSHEGFLRNLVIRKAKNTGEIL-----------VNI------ 213
Query: 482 AQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRL 541
S FD F+ + G + ++ + +S+V D L +
Sbjct: 214 VTTSQMEFD-------FKEIVDILLKGEYKGE----IKGILHTINDTLSDVVQVDK-LEI 261
Query: 542 LSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGP 601
L D I + + L+F I+P AFFQ N+ AEKLYS+ D+
Sbjct: 262 LY----------GRD----YIIEELLGLKFKIAPEAFFQTNSKGAEKLYSIVKDFLGDAS 307
Query: 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661
++FD+ CGTGTIG +A + VIG+E+ AV A+ NA++NG+ NC F+ V
Sbjct: 308 SKVVFDLYCGTGTIGQIVAPKAKKVIGVELIEEAVKAANENAKLNGLDNCEFIAGDVAKV 367
Query: 662 MGSL 665
+ L
Sbjct: 368 IKDL 371
>gi|419707425|ref|ZP_14234909.1| Putative RNA methyltransferase [Streptococcus salivarius PS4]
gi|383282771|gb|EIC80751.1| Putative RNA methyltransferase [Streptococcus salivarius PS4]
Length = 456
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 100/417 (23%), Positives = 163/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLA----GDGSGLKVKSARDVVTPLAHMSYSVQL 316
++A+PGE+ + G G E + R + HM+Y QL
Sbjct: 33 DNALPGEVIKMRVLKLKKNIGFGKVEEFVTLSPNRNQDIDATYLRSGIADFGHMTYEEQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K+ + L K GVS ++ LG YRNK
Sbjct: 93 KFKRKQVVDNLYKTA---------GVS--------------DVEVAETLGMETPYAYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF-QEFLQQSDLP 435
+ V ++ + GF N + + P++ + + +F ++ L++ DL
Sbjct: 130 AQVPVR-RVKGQLETGFYRKNSHDLI-----PIEDFLIQDKEIDKLIVFVRDLLRRYDLK 183
Query: 436 VWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVN 495
++ + +G R L VR G G+ + ++ F ++
Sbjct: 184 PYDEKEQTGLIRHLVVRRGHYSGQMM-----------------LVFVTTRPKVFR---ID 223
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
++ +AF P +IQ+ + A R L G+
Sbjct: 224 QIIAKITEAF-----------PSVVSIIQNINDKNTNAIFGKEFRTLY-----GQDT--- 264
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
I DS+ + IS +F+QVNT AEKLY D++DL D+++ D G GTI
Sbjct: 265 ------ITDSMLGNDYEISAQSFYQVNTEMAEKLYQTAIDFSDLTSDSIVIDAYSGIGTI 318
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL+ A +V V G+E+ +AV DA +NAE NGI N +V AE+ M KD + P
Sbjct: 319 GLSFAKQVKEVYGVEVIETAVEDAKKNAERNGITNAHYVADSAENAMAKWSKDGIKP 375
>gi|414161550|ref|ZP_11417809.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
simulans ACS-120-V-Sch1]
gi|410875987|gb|EKS23901.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
simulans ACS-120-V-Sch1]
Length = 453
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/358 (23%), Positives = 144/358 (40%), Gaps = 76/358 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPE-WIMKSREIGGLPCKLEGIL 365
L H+ Y QL K+N + + + + + + + + W
Sbjct: 85 LQHLDYQSQLTMKRNQVVNLFHRKGKFEQTVINDTIGMMNPW------------------ 126
Query: 366 GSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF 425
YRNK + VG + + + +GF +R+ + + +C I +
Sbjct: 127 ------NYRNKSQIPVGLNKEQEAIMGF----YRQRSHDIIDMDECIIQDSIQNQLMRSI 176
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
+ L++ D+ ++N K G R + +R G EVM+I +
Sbjct: 177 RALLKEHDVSIYNERKKQGLLRHVIIRVGHVS------------------REVMIIFVTN 218
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLLSI 544
F A E+L A +P VIQ+ ++ +NV L
Sbjct: 219 GKKFKQA--KPIVEKLVNA-----------MPNIKSVIQNINETHTNVIMGKTSKTLY-- 263
Query: 545 PKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTL 604
G+ E I D + ++ F IS +F+Q+N+ KLY+ +A L +
Sbjct: 264 ----GKDE---------IIDELDSVEFEISDQSFYQINSSQTVKLYNQAMKYAQLTGEET 310
Query: 605 LFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
+ D CG GTIGL +A + V G+E+ +A+ DA +NA++NG N FVC KAE V+
Sbjct: 311 VLDTYCGIGTIGLYMADKAKHVYGVEVVPAAIEDAKKNAQLNGYDNTTFVCGKAESVI 368
>gi|291556131|emb|CBL33248.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium siraeum
V10Sc8a]
Length = 493
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 93/369 (25%), Positives = 151/369 (40%), Gaps = 81/369 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H+SY QL K+ + + IGGL + I+
Sbjct: 82 LRHISYEAQLRAKEQFVKDAFTR------------------------IGGLSPEFLPIIR 117
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
+ +NGYRNK + +G GF + + E+ + P++ ++ I
Sbjct: 118 NTNINGYRNKLQIPIGTDKDGNLIAGFYAFHSHR-IVPCEKCLLQPDI------FSKITA 170
Query: 427 EFLQQS---DLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
+FL+ S +L ++ + G R L +R+G G+ + N+ E+ I
Sbjct: 171 DFLKISTGLNLTAYDETTHKGILRHLYLRKGYYSGEICLCIVVAKNVPEIKILS------ 224
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLS 543
+RL + + + + VI + +NV D + L S
Sbjct: 225 ---------------DRLLEKYP----------EIVSSVINVNNRDTNVILGDEEIVLTS 259
Query: 544 IPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDT 603
+ I D + + I+P AF+QVNT AE+LYS D+A+ T
Sbjct: 260 ---------------KNYICDIMCKIAVNIAPKAFYQVNTPCAEQLYSSACDFAEPKGKT 304
Query: 604 LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMG 663
+L D+ CG GTIGL++A +IG+E+ A+ +A +NA NGI NC F+CA A +
Sbjct: 305 VL-DLYCGAGTIGLSMARTAKKIIGVEIVPEAIENAKQNALANGITNCEFICADAAEAAR 363
Query: 664 SLLKDYLNP 672
L L P
Sbjct: 364 ILHSRSLRP 372
>gi|430851702|ref|ZP_19469437.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1258]
gi|430542284|gb|ELA82392.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1258]
Length = 457
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 109/409 (26%), Positives = 165/409 (40%), Gaps = 83/409 (20%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLK-VKS---ARDVVTPLAHMSYSVQL 316
E+A+PGE E G++ G G E + V++ R + PLAH+ Y QL
Sbjct: 38 ENALPGEEVEILVVKAGNKFGYGKVETFITQSPDRQPVENNALLRTGIAPLAHLKYEQQL 97
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K+ + ++ K I K E+ LP +G GYRNK
Sbjct: 98 VFKQKQVEHVMAK------------------IAKMPEVPVLPT-----VGMAEPFGYRNK 134
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + V + + P + + A K + ++ LQ+ +
Sbjct: 135 AQIPVR-RIDGQLVTGFYKKNSHDLVPIEDFYIQDPVIDQ-AIK---VVRDILQRFQVRG 189
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
+N KN G R + +R G + S M++ V+
Sbjct: 190 YNEEKNEGQLRHIIIRRG-------------------HYSHEMMVVLVT----------- 219
Query: 497 EFERLAKAFAAG--ATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLLSIPKADGEPEE 553
R K F + A A LP VIQ+ ++ +NV D L
Sbjct: 220 ---RKEKFFKSKEIAEAIHEELPEVVSVIQNINEEKTNVILGDKEKVLYG---------- 266
Query: 554 SNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTG 613
D +E D + + IS +F+QVNT AE LY ++A+L ++ D G G
Sbjct: 267 -RDYIE----DQLLGKTYRISAKSFYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIG 321
Query: 614 TIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
TIGL+LA RV V G+E+ A+ DA NA N I+N + KAE VM
Sbjct: 322 TIGLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENVHYEVGKAEKVM 370
>gi|363894293|ref|ZP_09321381.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacteriaceae
bacterium ACC19a]
gi|361962624|gb|EHL15736.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacteriaceae
bacterium ACC19a]
Length = 454
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 80/138 (57%), Gaps = 2/138 (1%)
Query: 531 NVAPADAPLRLLSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEK 588
N P + ++ ++ K + + N ++ R I D I NL F I P +F+QVN++ EK
Sbjct: 232 NKIPVKSIVQNVNTKKTNVILSDKNILLYGREYIQDMIENLTFNIYPNSFYQVNSIQMEK 291
Query: 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI 648
+Y D+A+L ++D+ CG GTI L L+ + V GIE+ A+ A +NA+IN I
Sbjct: 292 MYKRALDYANLQGTETVYDLYCGIGTITLLLSQKCKKVYGIEVVPQAIESAKQNAKINNI 351
Query: 649 KNCRFVCAKAEDVMGSLL 666
+N +F+C K ED + +L+
Sbjct: 352 ENAKFICGKVEDEIENLV 369
>gi|104773610|ref|YP_618590.1| methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
11842]
gi|103422691|emb|CAI97304.1| Methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
11842]
Length = 451
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 96/356 (26%), Positives = 147/356 (41%), Gaps = 75/356 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
LAH+ Y QLE K+ + ++L K + K+ IL
Sbjct: 82 LAHLKYDKQLEFKQKQVKELLSKAHLDQ------------------------IKVAEILP 117
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
SPL GYRNK + V ++ + +GF + + V + + P + + +
Sbjct: 118 SPLETGYRNKAQVPVR-MVKGQLEIGFFRRHSHDLVPLEDFFTNDPEIDRVLLA----VR 172
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
+ L++ +P ++ K+ G V LEV + +
Sbjct: 173 DILREKRIPAYDEEKHQG-----------------QVRYLEV--------------RRGT 201
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
AT D VV +R P L I++ GV ++ P R I
Sbjct: 202 ATGDMMVVLVCLDR-----------DFPGLHAVVDEIKEIAGVKSIFLNHNPKRTNVIL- 249
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
GE + + + I D I +L F ISP +FFQ+N+L +LY L D A L D L+
Sbjct: 250 --GE-HDYHLWGKRYIDDKIGDLTFEISPQSFFQINSLQTPRLYKLAIDQAGLTKDDLIV 306
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
D G GTIGL+ A V V G+E+ +AV DA NA +N I N ++ KAE++M
Sbjct: 307 DAYSGIGTIGLSAAKYVKEVRGVEVVKAAVKDAKNNARLNQIHNAKYYVGKAEELM 362
>gi|448825451|ref|YP_007418382.1| putative RNA methyltransferase [Megavirus lba]
gi|444236636|gb|AGD92406.1| putative RNA methyltransferase [Megavirus lba]
Length = 379
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 129/311 (41%), Gaps = 57/311 (18%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYA 422
I+ SP++N YRNK F VG+ ++ +G+ L + + V D ++
Sbjct: 36 SIISSPIINFYRNKLRFDVGFDIKGNIVIGYALPKKQSNIRYVFPADDMKHLHPRMKLII 95
Query: 423 SIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIA 482
Q +L + ++ + N+ +T+R + + N +N E +I ++ +
Sbjct: 96 YWLQSYLNNNLKSWYSYYHNTSTLSSITIRTSFHTNDSIVIVN--INCEEYDIDDI--VN 151
Query: 483 QVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLL 542
+ F D F + K P T +I H
Sbjct: 152 YFTQMDFSDW---ENFNFVIK------------FPKTQHIIIGHD--------------- 181
Query: 543 SIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYS----LGGDWAD 598
IH+ + F IS +FFQVNTLA E LY+ L + +
Sbjct: 182 ------------------YIHEKLDQYTFKISHESFFQVNTLATEVLYNTIKLLAIKYFN 223
Query: 599 LGPDT-LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAK 657
D+ +L D+CCGTGTI LA V+GI++ +S++ DA+ N N I+N F+CA
Sbjct: 224 QCHDSNILLDLCCGTGTIATYLASTFTHVVGIDIKSSSIIDANENKHHNNIQNIDFICAP 283
Query: 658 AEDVMGSLLKD 668
E+V+ ++ D
Sbjct: 284 IENVLDQVIID 294
>gi|334128067|ref|ZP_08501968.1| 23S rRNA (uracil-5-)-methyltransferase [Centipeda periodontii DSM
2778]
gi|333388389|gb|EGK59568.1| 23S rRNA (uracil-5-)-methyltransferase [Centipeda periodontii DSM
2778]
Length = 467
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 97/371 (26%), Positives = 144/371 (38%), Gaps = 94/371 (25%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H+SY QL+ K+ +A L + + + +P K
Sbjct: 97 LQHLSYDAQLDAKRAQVADALTHIGK---------------------LLQIPVKETMRAE 135
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
P YRNK +F +G + + K M+G F +G + +C A+ +
Sbjct: 136 QPW--NYRNKMQFPIGVN-KGK----IMVGCFAQGSHKIINTENCHIQHTANNDLANAVR 188
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
++ +P++N + G R + R GR+ L+A + +
Sbjct: 189 AIAEKLHIPIYNEDTHKGILRHIVGRVGRNND---------------------LMAVIVT 227
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
AT + R AK F P+L + HQ +
Sbjct: 228 AT-------KQLPR-AKDFVRMLRERLPNL------VSVHQNIQTY-------------- 259
Query: 547 ADGEPEESNDVVEAR----------IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDW 596
N+V+ R I DS+ L F ISP +FFQVNT AE+LY +
Sbjct: 260 -------RNNVIMGRDTQLLWGRSTIIDSLGRLNFHISPRSFFQVNTRQAERLYEQALAY 312
Query: 597 ADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCA 656
ADL + D CGTGTI L LA + V GIE+ A+ DA +NA N +KN F+
Sbjct: 313 ADLHGTETVIDAYCGTGTITLFLAQKARKVYGIEIVQPAILDARKNARDNHVKNAEFIVG 372
Query: 657 KAEDVMGSLLK 667
A DVM +L K
Sbjct: 373 DATDVMPALYK 383
>gi|430822567|ref|ZP_19441145.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0120]
gi|430865127|ref|ZP_19480885.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1574]
gi|431743088|ref|ZP_19531969.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2071]
gi|431764148|ref|ZP_19552691.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E4215]
gi|430443144|gb|ELA53141.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0120]
gi|430553205|gb|ELA92906.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1574]
gi|430607452|gb|ELB44772.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2071]
gi|430631333|gb|ELB67655.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E4215]
Length = 457
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 109/409 (26%), Positives = 165/409 (40%), Gaps = 83/409 (20%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLK-VKS---ARDVVTPLAHMSYSVQL 316
E+A+PGE E G++ G G E + V++ R + PLAH+ Y QL
Sbjct: 38 ENALPGEEVEILVVKAGNKFGYGKVETFITQSPDRQPVENNALLRTGIAPLAHLKYEQQL 97
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K+ + ++ K I K E+ LP +G GYRNK
Sbjct: 98 VFKQKQVEHVMAK------------------IAKMPEVPVLPT-----VGMAEPFGYRNK 134
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + V + + P + + A K + ++ LQ+ +
Sbjct: 135 AQIPVR-RIDGQLATGFYKKNSHDLVPIEDFYIQDPVIDQ-AIK---VVRDILQRFQVRG 189
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
+N KN G R + +R G + S M++ V+
Sbjct: 190 YNEEKNEGQLRHIIIRRG-------------------HYSHEMMVVLVT----------- 219
Query: 497 EFERLAKAFAAG--ATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLLSIPKADGEPEE 553
R K F + A A LP VIQ+ ++ +NV D L
Sbjct: 220 ---RKEKFFKSKEIAEAIHEELPEVVSVIQNINEEKTNVILGDKEKVLYG---------- 266
Query: 554 SNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTG 613
D +E D + + IS +F+QVNT AE LY ++A+L ++ D G G
Sbjct: 267 -RDYIE----DQLLGKTYRISAKSFYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIG 321
Query: 614 TIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
TIGL+LA RV V G+E+ A+ DA NA N I+N + KAE VM
Sbjct: 322 TIGLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENVHYEVGKAEKVM 370
>gi|253681845|ref|ZP_04862642.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
botulinum D str. 1873]
gi|253561557|gb|EES91009.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
botulinum D str. 1873]
Length = 450
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 102/357 (28%), Positives = 148/357 (41%), Gaps = 77/357 (21%)
Query: 310 MSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPL 369
+SY QLE KK+ + KL NA G+S E++ GI GSP
Sbjct: 85 LSYEKQLEIKKDQVL----KLFENA------GISGFEFL--------------GIQGSPE 120
Query: 370 VNGYRNKCEFSVG-YSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEF 428
YRNK EF+ G + T+G G+ + +E C V E+
Sbjct: 121 EFEYRNKMEFTFGDMEKGGELTLGMHAQGKSFGIISADE---CKIVDSDFNLILKTVLEY 177
Query: 429 LQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML-IAQVSSA 487
+ +LP + + G+ R L +R+GR N E+M+ + S
Sbjct: 178 FRGKELPHYRIMSHEGYLRNLVIRKGR------------------NTQEIMVNLVTTSQR 219
Query: 488 TFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKA 547
FD SEF L K L ++ + +S+V AD
Sbjct: 220 EFD----LSEFVELLKGLNYKG-------ELKGILHTVNDSLSDVVQAD----------- 257
Query: 548 DGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
S +V+ R I + + L+F ISP +FFQ NT AE LYS+ D+ ++
Sbjct: 258 ------SMEVLFGRDYIMEEVLGLKFKISPFSFFQTNTKGAEALYSIVRDFMGDAKSKVV 311
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
FD+ CGTGTIG AH VIGIE+ A A+ NA++N + NC F+ V+
Sbjct: 312 FDLYCGTGTIGQIAAHNAEKVIGIELIEEAAKAANENAKLNCLNNCEFLAGDVAKVI 368
>gi|406928316|gb|EKD64141.1| hypothetical protein ACD_51C00065G0010 [uncultured bacterium]
Length = 488
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 93/299 (31%), Positives = 140/299 (46%), Gaps = 55/299 (18%)
Query: 373 YRNKCEFSVGYSLQAKPTVGFMLGNFREG----VTAVEEPVDCPNVSEIACKYASIFQEF 428
YRNK EFS G ++K LG G + VEE C SE + + + ++F
Sbjct: 152 YRNKMEFSFGN--ESKEDTELRLGLHPAGRHVDIFDVEE---CFLQSEKSSEILARVRDF 206
Query: 429 LQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSAT 488
++++L +N N+G L +R+G++ G E+ ++ V E ML +
Sbjct: 207 ARKNNLSFYNSATNAGLLSSLYIRDGKNTG--------EIMVNLVTCEEFMLGKEFCE-L 257
Query: 489 FDDA--VVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
F+D +V+ + ++A+ V V P SI +
Sbjct: 258 FEDMPEIVSIYWTKIARKRGMKTQ------------------VGEVLLKGKP----SIRE 295
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
G E+ E R +L+F ISP AFFQ NT AE LYS A L ++F
Sbjct: 296 ELGMRHEA----EGR------SLKFKISPQAFFQPNTHQAEILYSQAVKAAGLTGSEVVF 345
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
D+ CGTGTIGL AH+ + G+E+N SA+++A +NA +NGI+N F KA DV S+
Sbjct: 346 DLYCGTGTIGLFCAHKAKKIYGLELNESAIANAKQNAMLNGIENSWF---KAGDVDKSI 401
>gi|255657938|ref|ZP_05403347.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Mitsuokella multacida
DSM 20544]
gi|260850131|gb|EEX70138.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Mitsuokella multacida
DSM 20544]
Length = 457
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 100/384 (26%), Positives = 156/384 (40%), Gaps = 88/384 (22%)
Query: 297 VKSARDVVTP------------LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSL 344
++++RD V P L H+ Y QL+ K+ Q++ +TR
Sbjct: 66 LRASRDRVAPICPIYEQCGGCQLQHLDYMAQLKAKRQ---QVIDAVTR------------ 110
Query: 345 PEWIMKSREIGGLP-CKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVT 403
IGG +E LG+ YRNK +F +G + K ++G F +G
Sbjct: 111 ---------IGGQKDLFVEPTLGAESPWNYRNKMQFPIG-RCKGKT----VIGCFAQGTH 156
Query: 404 AVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDV 463
+ + DC E + + ++ + + +PV+N +++G R + R G
Sbjct: 157 EIIDTRDCHIQKEGNNEIVNAVRDIITELRIPVYNEDRHTGVLRHVVGRVGEK------- 209
Query: 464 ENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVI 523
E+M++ ++ EF + A LP +
Sbjct: 210 ------------GELMVVIVTATKQLPR---EKEFVK----------ALRKRLPHVVSIH 244
Query: 524 QDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNT 583
Q+ Q N LL G+P I D I L F ISP +FFQVNT
Sbjct: 245 QNIQTYRNNVIMGRETNLLW-----GKPT---------ILDRIGRLTFHISPRSFFQVNT 290
Query: 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNA 643
AE LY+ ++A+L + + D CGTGTI L LA + V GIE+ A+ DA +NA
Sbjct: 291 KQAEVLYNKALEFANLKGEETVIDAYCGTGTITLFLAQKAREVYGIEIVKPAILDAQKNA 350
Query: 644 EINGIKNCRFVCAKAEDVMGSLLK 667
N ++N F+ A +VM L K
Sbjct: 351 RDNNVRNAEFIVGDATEVMPRLYK 374
>gi|430841421|ref|ZP_19459340.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1007]
gi|431071674|ref|ZP_19494645.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1604]
gi|430494197|gb|ELA70447.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1007]
gi|430567307|gb|ELB06393.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1604]
Length = 457
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 109/409 (26%), Positives = 166/409 (40%), Gaps = 83/409 (20%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLK-VKS---ARDVVTPLAHMSYSVQL 316
E+A+PGE E G++ G G E + V++ R + PLAH+ Y QL
Sbjct: 38 ENALPGEEVEILVVKAGNKFGYGKVETFITQSPDRQPVENNALLRTGIAPLAHLKYEQQL 97
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K+ + ++ K I K E+ LP +G GYRNK
Sbjct: 98 VFKQKQVEHVMAK------------------IAKMPEVPVLPT-----VGMVEPFGYRNK 134
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + V + + P + + A K + ++ LQ+ +
Sbjct: 135 AQIPVR-RIDGQLATGFYKKNSHDLVPIEDFYIQDPVIDQ-AIK---VVRDILQRFQVRG 189
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
+N KN G R + +R G + S M++ V+
Sbjct: 190 YNEEKNEGQLRHIIIRRG-------------------HYSHEMMVVLVT----------- 219
Query: 497 EFERLAKAFAAG--ATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLLSIPKADGEPEE 553
R K F + A A LP VIQ+ ++ +NV D G+
Sbjct: 220 ---RKEKFFKSKEIAEAIHEELPEVVSVIQNINEEKTNVILGD-----------KGKVLY 265
Query: 554 SNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTG 613
D +E D + + IS +F+QVNT AE LY ++A+L ++ D G G
Sbjct: 266 GRDYIE----DQLLGKTYRISAKSFYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIG 321
Query: 614 TIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
TIGL+LA RV V G+E+ A+ DA NA N I+N + KAE VM
Sbjct: 322 TIGLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENVHYEVGKAEKVM 370
>gi|125718271|ref|YP_001035404.1| RNA methyltransferase [Streptococcus sanguinis SK36]
gi|125498188|gb|ABN44854.1| RNA methyltransferase, putative [Streptococcus sanguinis SK36]
Length = 456
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 104/413 (25%), Positives = 164/413 (39%), Gaps = 79/413 (19%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDG----SGLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGEL + G G E L + R + L H++Y QL
Sbjct: 33 ENALPGELIRMRVLKVNKKIGFGKVEEFLRTSDQRNENLDMAYLRTGIADLGHLNYPAQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLP-CKLEGILGSPLVNGYRN 375
+ K+ + L K I GL ++ LG GYRN
Sbjct: 93 DFKRKQVKDSLYK------------------------IAGLSDVEVAPTLGMEHPLGYRN 128
Query: 376 KCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLP 435
K + V + + GF N + + + + P + ++ ++ + F DL
Sbjct: 129 KAQVPVR-RVNGQLETGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRNLLRRF----DLK 183
Query: 436 VWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVN 495
++ + +G R L VR G G E+M+I + V
Sbjct: 184 PYDEQEKTGLIRNLVVRRGHYSG------------------EIMVILVTTRPKIFR--VE 223
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
E L +AF P ++Q+ N P +A I D
Sbjct: 224 QLMECLTEAF-----------PAIKSIMQN----INDQPGNA------IFGKDWRTLYGQ 262
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
+ I D + F I+ AF+Q+NT AEKLY D+++L D ++ D G GTI
Sbjct: 263 NY----ITDQMLGNDFQIAAPAFYQINTEMAEKLYQTAIDFSELTADDVVLDAYSGIGTI 318
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
GL++A +V V G+E+ AV ++ +NA INGI N +VCA AE+ + + LK+
Sbjct: 319 GLSVAKQVKQVYGVEVIPEAVENSRKNAAINGITNASYVCAPAEEAIQNWLKE 371
>gi|303234202|ref|ZP_07320848.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Finegoldia magna
BVS033A4]
gi|302494743|gb|EFL54503.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Finegoldia magna
BVS033A4]
Length = 442
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 133/301 (44%), Gaps = 58/301 (19%)
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLG-NFREGVTAVEEPVDCPNVSEIACKYASIF 425
SP++ GYRNK E++ G S++ P V LG + + + + VDC + E K
Sbjct: 113 SPILQGYRNKMEYTFGDSVKGGPLV---LGLHTKNKFYEITDTVDCNIIDEGFNKIRQAV 169
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
QE+ + + + + K++G R +R+ S E M+ +
Sbjct: 170 QEYFRDKNYEFFKKIKHTGLLRHFIIRKSFSE------------------DEYMINLVTT 211
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
S FD VN +F AK + ++ + +S+ D L LL
Sbjct: 212 SDKFD---VN-DFVEFAKQIDNRIVSIYHTI---------NDNISDAVIVDK-LELL--- 254
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYS----LGGDWADLGP 601
+ + + I+ L F ISP +FFQ N AE++Y+ L GD + G
Sbjct: 255 -----------YGKEYLTEKINGLEFRISPFSFFQPNPAQAEQIYNRALELAGDLS--GK 301
Query: 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661
+ ++D+ CGTGTI A + VIG+E+ A AV A NA++NG+ N +F+C +
Sbjct: 302 N--VYDLYCGTGTIAQIFAKKSESVIGVEIVAEAVEKAQENAKLNGLTNTKFICDDCLNF 359
Query: 662 M 662
M
Sbjct: 360 M 360
>gi|302392787|ref|YP_003828607.1| RNA methyltransferase, TrmA family [Acetohalobium arabaticum DSM
5501]
gi|302204864|gb|ADL13542.1| RNA methyltransferase, TrmA family [Acetohalobium arabaticum DSM
5501]
Length = 456
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 68/114 (59%)
Query: 559 EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLT 618
E++I D I ++R+ IS +FFQVNTL A+KLY ++ADL + + D CG G+I L
Sbjct: 267 ESKIIDYIGSIRYQISAQSFFQVNTLQAKKLYDQILEYADLSGEETVVDAYCGIGSISLY 326
Query: 619 LAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
LA V GIE+ + A+ DA NAE+N I NC F K ++ L + LNP
Sbjct: 327 LAQAAKQVYGIEVVSQAIDDAKENAELNNIDNCYFKVGKVRKILPKLKSNGLNP 380
>gi|116627537|ref|YP_820156.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus
LMD-9]
gi|386086343|ref|YP_006002217.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Streptococcus
thermophilus ND03]
gi|386344346|ref|YP_006040510.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus JIM
8232]
gi|116100814|gb|ABJ65960.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
thermophilus LMD-9]
gi|312278056|gb|ADQ62713.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Streptococcus
thermophilus ND03]
gi|339277807|emb|CCC19555.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus JIM
8232]
Length = 453
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 102/417 (24%), Positives = 170/417 (40%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGN-DEGLA---GDGSGLKVKSARDVVTPLAHMSYSVQL 316
++A+PGE+ G G DE + + R + HM+Y+ QL
Sbjct: 33 DNALPGEVIRMRVLKLKKNIGFGKVDEYVTLSPSRNQDINATYLRSGIADFGHMTYTEQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K+ + L K G+S ++ LG YRNK
Sbjct: 93 KFKRKQVVDNLYKTA---------GIS--------------DVEVAETLGMETPYAYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF-QEFLQQSDLP 435
+ V ++ + GF N + + P++ + + +F ++ L++ DL
Sbjct: 130 AQVPVR-RVKGQLETGFYRKNSHDLI-----PIEDFLIQDKEIDKLIVFVRDLLRRYDLK 183
Query: 436 VWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVN 495
++ + +G R L VR G G+ M++ V++
Sbjct: 184 PYDEKEQTGLIRHLVVRRGHYSGQ-------------------MMLVFVTT--------K 216
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
+ R+ + A T + PS+ +IQ+ + A R L G+
Sbjct: 217 PKVFRIDQVIAK-ITEAFPSI---VSIIQNINDKNTNAIFGKEFRTLY-----GQDT--- 264
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
I DS+ + IS +F+QVNT AEKLY + D++DL D+++ D G GTI
Sbjct: 265 ------ITDSMLGNDYEISAQSFYQVNTEMAEKLYQIAIDFSDLNSDSIVIDAYSGIGTI 318
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL+ A +V V G+E+ +AV DA +NAE NGI N +V AE+ M +D + P
Sbjct: 319 GLSFAKQVREVYGVEVIETAVEDAKKNAERNGITNAHYVANSAENAMAKWSQDGIKP 375
>gi|433654428|ref|YP_007298136.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433292617|gb|AGB18439.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 452
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 66/114 (57%)
Query: 559 EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLT 618
+ I D I + +F ISP +FFQVN + + LY ++ADL D ++ DV CG GTI +
Sbjct: 263 DGYITDYIGDKKFEISPLSFFQVNPIQTKVLYEKALEYADLKGDEIVIDVYCGIGTISIF 322
Query: 619 LAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
A V V GIE+ + AV DA RNA IN + N F+ KAEDVM L L P
Sbjct: 323 FAKYVKHVYGIEVVSDAVEDAKRNAAINNVDNADFIAGKAEDVMKDLCNKGLKP 376
>gi|427439394|ref|ZP_18924049.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pediococcus lolii NGRI
0510Q]
gi|425788230|dbj|GAC44837.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pediococcus lolii NGRI
0510Q]
Length = 455
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 94/378 (24%), Positives = 148/378 (39%), Gaps = 93/378 (24%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ PL H++Y QL+ K+ I +L+K S E I + +G
Sbjct: 85 IAPLQHIAYPAQLKFKQTQIKNLLQK-------------SHLEQIEVAETVG-------- 123
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
+ +P GYRNK + V ++ + GF + V + + P + ++ +
Sbjct: 124 -MENP--TGYRNKAQVPVR-KVKGQLATGFFKRGSHDLVPIEDFYIQDPVIDQVILQVRD 179
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
I +E+ + ++ G R + VR GR G+ + V+LI +
Sbjct: 180 ILREY----QIEPYDEINQRGVVRNIMVRRGRRSGEIM----------------VVLITR 219
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLS 543
T+S P L A I GV +V
Sbjct: 220 --------------------------TSSVPHLDEIAAAIYQIDGVVSVI---------- 243
Query: 544 IPKADGEPEESNDVV---------EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
+ P+++N ++ E+ IHD + +F IS +F+QVN + EKLY L
Sbjct: 244 ---QNINPKQTNVIMGKEDRLLAGESVIHDELLGQKFIISAHSFYQVNPVQTEKLYQLAI 300
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
+ A L + DV G GTI L +A V G+E+ AV DA NA N KN +FV
Sbjct: 301 EKAGLTGKETVLDVYSGIGTISLAMAQAAKKVYGVEIVKEAVQDAKVNAVQNQAKNVKFV 360
Query: 655 CAKAEDVMGSLLKDYLNP 672
KAED M + + P
Sbjct: 361 VGKAEDQMAKWQAEGMQP 378
>gi|335050256|ref|ZP_08543230.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera sp. UPII
199-6]
gi|333757587|gb|EGL35147.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera sp. UPII
199-6]
Length = 461
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 70/111 (63%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
IHD+I NLRF IS +FFQVN+ A++LY ++ADL + ++ DV CGTGTI L LA
Sbjct: 273 IHDAIGNLRFHISAQSFFQVNSEQAQRLYEKAMEFADLKGNEIVADVYCGTGTITLFLAQ 332
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
+ V GIE+ SA+ DA RNA N +KN F+ A + L+K+ + P
Sbjct: 333 KAKQVYGIEIVPSAIKDAIRNARDNHVKNAEFILGDAVYKLPELIKNGVRP 383
>gi|125974255|ref|YP_001038165.1| RNA methyltransferase [Clostridium thermocellum ATCC 27405]
gi|125714480|gb|ABN52972.1| RNA methyltransferase, TrmA family [Clostridium thermocellum ATCC
27405]
Length = 453
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/369 (23%), Positives = 148/369 (40%), Gaps = 99/369 (26%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLP-CKLEGIL 365
L HM+Y L K N + + + R IGGL + +
Sbjct: 85 LQHMNYEASLRFKTNVVRESI------------------------RRIGGLENVVVHDTV 120
Query: 366 GSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTA------VEEPVDCPNVS---E 416
G YRNK ++ +G +++G+ A E +DC +
Sbjct: 121 GMEQPVNYRNKAQYPIG--------------RYKDGIRAGFYAKRSHEIIDCATCTIQHS 166
Query: 417 IACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNIS 476
++ + ++ +E+++++++ ++ G R + R G G
Sbjct: 167 VSDRVRAVVKEYIEKNNISTYDEITGEGLVRHIMTRVGFKTG------------------ 208
Query: 477 EVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLP-LTALVIQDHQGVSNVAPA 535
EVM++ ++ +RL K +P + ++V+ + +NV
Sbjct: 209 EVMVVLVINGRNIPSQ--KKLVDRLVK-----------EIPEIKSVVLNVNTKRTNVILG 255
Query: 536 DAPLRLLSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLG 593
D N VV R I D I +F ISP +FFQVN + E LY
Sbjct: 256 D-----------------ENIVVYGRDTITDYIGEFKFNISPLSFFQVNPVQTEVLYRKA 298
Query: 594 GDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRF 653
D+A L +FD+ CG GTI L L+ + + G+E+ +AV DA NA++NG++N F
Sbjct: 299 LDYAQLTGKETVFDLYCGIGTISLFLSKKAKRIYGVEVVEAAVKDAWENAKVNGVENAEF 358
Query: 654 VCAKAEDVM 662
+ +AE V+
Sbjct: 359 IVGEAEKVI 367
>gi|387909435|ref|YP_006339741.1| trNA methyltransferase, TrmA family [Streptococcus thermophilus
MN-ZLW-002]
gi|387574370|gb|AFJ83076.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus
MN-ZLW-002]
Length = 453
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 102/417 (24%), Positives = 170/417 (40%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGN-DEGLA---GDGSGLKVKSARDVVTPLAHMSYSVQL 316
++A+PGE+ G G DE + + R + HM+Y+ QL
Sbjct: 33 DNALPGEVIRMRVLKLKKNIGFGKVDEYVTLSPSRNQDINATYLRSGIADFGHMTYTEQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K+ + L K G+S ++ LG YRNK
Sbjct: 93 KFKRKQVVDNLYKTA---------GIS--------------DVEVAETLGMETPYAYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF-QEFLQQSDLP 435
+ V ++ + GF N + + P++ + + +F ++ L++ DL
Sbjct: 130 AQVPVR-RVKGQLETGFYRKNSHDLI-----PIEDFLIQDKEIDKLIVFVRDLLRRYDLK 183
Query: 436 VWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVN 495
++ + +G R L VR G G+ M++ V++
Sbjct: 184 PYDEKEQTGLIRHLVVRRGHYSGQ-------------------MMLVFVTT--------K 216
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
+ R+ + A T + PS+ +IQ+ + A R L G+
Sbjct: 217 PKVFRIDQVIAK-ITEAFPSI---VSIIQNINDKNTNAIFGKEFRTLY-----GQDT--- 264
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
I DS+ + IS +F+QVNT AEKLY + D++DL D+++ D G GTI
Sbjct: 265 ------ITDSMLGNDYEISAQSFYQVNTEMAEKLYQIAIDFSDLNSDSIVIDAYSGIGTI 318
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL+ A +V V G+E+ +AV DA +NAE NGI N +V AE+ M +D + P
Sbjct: 319 GLSFAKQVREVYGVEVIETAVEDAKKNAERNGITNAHYVADSAENAMAKWSQDGIKP 375
>gi|325679453|ref|ZP_08159035.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus albus 8]
gi|324108852|gb|EGC03086.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus albus 8]
Length = 397
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 94/360 (26%), Positives = 147/360 (40%), Gaps = 75/360 (20%)
Query: 368 PLVNGYRNKCEFSVGYSL-QAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
P+ Y +C+ Y L ++K + + + + + AV+ DC E A +
Sbjct: 57 PMEKPYNYRCKVQNIYGLDRSKRIISGVYQSSGQKIVAVD---DCFLEDERAAPIVRSVK 113
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
+ ++ +P ++ G R +R RS G +VML+ +
Sbjct: 114 KLMKDMRIPPYDIRSGRGILRHTLIRTSRSTG------------------QVMLVLVTAG 155
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
A L KA A P ++Q N+ P PL L
Sbjct: 156 AMLPAK------NNLVKAMRAAH-------PEITTIVQ------NICPDGMPLTL----- 191
Query: 547 ADGEPEESNDVV---EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDT 603
GE D+V + I D + RF ISP +F+QVN L EKLYS + A +
Sbjct: 192 --GE----RDIVLFGKGYIEDELCGCRFRISPASFYQVNPLQTEKLYSCAVEAAGISEGV 245
Query: 604 LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMG 663
+ D CGTGTIG+ A V G+E+N SA DAH+NAE+NG++N +F A M
Sbjct: 246 RVIDAYCGTGTIGIICAKNGAEVTGVELNKSACRDAHKNAELNGLENIKFCNDDAGKFMQ 305
Query: 664 SLLKDYLNPLREEDEHASEGSNKEITIAE--EKDSSRDNVPENEGCSGQDPENDIADSNC 721
++ AS+G ++ I + +SR+ + GC+G+ I +C
Sbjct: 306 AM--------------ASKGEGCDVLIMDPPRAGASREFI----GCAGRLAPQKIVYVSC 347
>gi|425058909|ref|ZP_18462266.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
504]
gi|430835761|ref|ZP_19453748.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0680]
gi|430838138|ref|ZP_19456088.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0688]
gi|430849647|ref|ZP_19467420.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1185]
gi|430858103|ref|ZP_19475732.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1552]
gi|431497660|ref|ZP_19514814.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1634]
gi|403037029|gb|EJY48355.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
504]
gi|430489123|gb|ELA65756.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0680]
gi|430492418|gb|ELA68832.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0688]
gi|430537398|gb|ELA77741.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1185]
gi|430546055|gb|ELA86021.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1552]
gi|430588595|gb|ELB26787.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1634]
Length = 457
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 109/409 (26%), Positives = 165/409 (40%), Gaps = 83/409 (20%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLK-VKS---ARDVVTPLAHMSYSVQL 316
E+A+PGE E G++ G G E + V++ R + PLAH+ Y QL
Sbjct: 38 ENALPGEEVEILVVKAGNKFGYGKVETFITQSPDRQPVENNALLRTGIAPLAHLKYEQQL 97
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K+ + ++ K I K E+ LP +G GYRNK
Sbjct: 98 VFKQKQVEHVMAK------------------IAKMPEVPVLPT-----VGMAEPFGYRNK 134
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + V + + P + + A K + ++ LQ+ +
Sbjct: 135 AQIPVR-RIDGQLATGFYKKNSHDLVPIEDFYIQDPVIDQ-AIK---VVRDILQRFQVRG 189
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
+N KN G R + +R G + S M++ V+
Sbjct: 190 YNEEKNEGQLRHIIIRRG-------------------HYSHEMMVVLVT----------- 219
Query: 497 EFERLAKAFAAG--ATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLLSIPKADGEPEE 553
R K F + A A LP VIQ+ ++ +NV D L
Sbjct: 220 ---RKEKFFKSKEIAEAIHEELPEVVSVIQNINEEKTNVILGDKEKVLYG---------- 266
Query: 554 SNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTG 613
D +E D + + IS +F+QVNT AE LY ++A+L ++ D G G
Sbjct: 267 -RDYIE----DQLLGKTYRISAKSFYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIG 321
Query: 614 TIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
TIGL+LA RV V G+E+ A+ DA NA N I+N + KAE VM
Sbjct: 322 TIGLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENVHYEVGKAEKVM 370
>gi|365904937|ref|ZP_09442696.1| tRNA (uracil-5-)-methyltransferase-like protein [Lactobacillus
versmoldensis KCTC 3814]
Length = 451
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 94/363 (25%), Positives = 149/363 (41%), Gaps = 76/363 (20%)
Query: 300 ARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPC 359
AR + PL+H+ YS QL+ K++ IA +K GL
Sbjct: 80 ARTGIAPLSHLKYSEQLKFKQHQIAVNYQK-------------------------NGLDI 114
Query: 360 KLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIAC 419
K+ LG YRNK + V + K T GF + E + + + P +
Sbjct: 115 KVNETLGMTDPLHYRNKAQVPVR-EVDGKLTTGFYRRHSHELIPMEDFLIQDPKIDAEIL 173
Query: 420 KYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVM 479
+ I +++ + ++ + G R + VR G+ + ++
Sbjct: 174 RVRDILRKYKVRG----FDEENHKGQIRTIMVRRAYYTGQMM----------------IV 213
Query: 480 LIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL 539
L+++V S ++ +A A S L + ++ +NV +
Sbjct: 214 LVSRVRDI--------SHYKDIANEIMASDEVKS-------LYLNINEKKTNVIFG-KEM 257
Query: 540 RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
+LL+ G P I D I + ISP +F+QVN +KLY L D A L
Sbjct: 258 QLLA-----GSP---------YIDDEILGNTYRISPRSFYQVNPTQTQKLYQLAIDKAQL 303
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659
+ + D G GTIGL++A++ V GIE+ AV DA +NA+IN IKN FV K E
Sbjct: 304 TGNESVVDAYSGIGTIGLSMANKAKKVTGIEVVEDAVKDAQQNADINNIKNADFVVGKTE 363
Query: 660 DVM 662
DV+
Sbjct: 364 DVL 366
>gi|333897656|ref|YP_004471530.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333112921|gb|AEF17858.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 452
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 135/297 (45%), Gaps = 56/297 (18%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKPTVGFML-GNFREGVTAVEEPVDCPNVSE--IAC 419
GI+GSP V YRNK E++ G +G + G + + +T DC V IAC
Sbjct: 114 GIVGSPDVFSYRNKMEYTFGIDDNGIMQLGLHIKGRYYDIITTE----DCRIVDSDFIAC 169
Query: 420 KYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVM 479
+ ++ +Q LP +N + G+ R L +R+ + G E+ I+ V S+
Sbjct: 170 LKNVL--DYAKQHSLPHYNIKTHEGYMRNLVIRKAANTG--------EILINIVTTSQK- 218
Query: 480 LIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL 539
+F +LA + ++ L ++ L
Sbjct: 219 ---------------KHDFSKLA--------SELKNIKLKGKLV-------------GIL 242
Query: 540 RLLSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWA 597
++ +D E +V+ R I + I L+F IS +FFQ N+ AE+LYS+ ++A
Sbjct: 243 HTVNDSYSDAVKCEKLEVLYGRDYIMEEILGLKFKISAFSFFQTNSKGAERLYSVAREFA 302
Query: 598 DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
+ +LFD+ CGTGTIG+ +A V+GIE+ AV A NA +NG+ N +F+
Sbjct: 303 GDISNKILFDLYCGTGTIGMIMAPLSKKVVGIELVEEAVDAARENARLNGLNNIQFI 359
>gi|431586006|ref|ZP_19520521.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1861]
gi|431739987|ref|ZP_19528906.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2039]
gi|430593184|gb|ELB31170.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1861]
gi|430604114|gb|ELB41614.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2039]
Length = 457
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 109/409 (26%), Positives = 165/409 (40%), Gaps = 83/409 (20%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLK-VKS---ARDVVTPLAHMSYSVQL 316
E+A+PGE E G++ G G E + V++ R + PLAH+ Y QL
Sbjct: 38 ENALPGEEVEILVVKAGNKFGYGKVETFITQSPDRQPVENNALLRTGIAPLAHLKYEQQL 97
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K+ + ++ K I K E+ LP +G GYRNK
Sbjct: 98 VFKQKQVEHVMAK------------------IAKMPEVPVLPT-----VGMVEPFGYRNK 134
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + V + + P + + A K + ++ LQ+ +
Sbjct: 135 AQIPVR-RIDGQLATGFYKKNSHDLVPIEDFYIQDPVIDQ-AIK---VVRDILQRFQVRG 189
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
+N KN G R + +R G + S M++ V+
Sbjct: 190 YNEEKNEGQLRHIIIRRG-------------------HYSHEMMVVLVT----------- 219
Query: 497 EFERLAKAFAAG--ATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLLSIPKADGEPEE 553
R K F + A A LP VIQ+ ++ +NV D L
Sbjct: 220 ---RKEKFFKSKEIAEAIHEELPEVVSVIQNINEEKTNVILGDKEKVLYG---------- 266
Query: 554 SNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTG 613
D +E D + + IS +F+QVNT AE LY ++A+L ++ D G G
Sbjct: 267 -RDYIE----DQLLGKTYRISAKSFYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIG 321
Query: 614 TIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
TIGL+LA RV V G+E+ A+ DA NA N I+N + KAE VM
Sbjct: 322 TIGLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENVHYEVGKAEKVM 370
>gi|227550544|ref|ZP_03980593.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecium TX1330]
gi|257897054|ref|ZP_05676707.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
Com12]
gi|293378745|ref|ZP_06624903.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
PC4.1]
gi|227180445|gb|EEI61417.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecium TX1330]
gi|257833619|gb|EEV60040.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
Com12]
gi|292642673|gb|EFF60825.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
PC4.1]
Length = 460
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 95/367 (25%), Positives = 147/367 (40%), Gaps = 71/367 (19%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H++Y QL+ KK+ + Q L+K P G R LP +G
Sbjct: 87 LQHLAYQAQLDFKKDLLLQALEKFK-------PAGF---------RSYQLLPT-----IG 125
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPT-VGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF 425
YRNK +F + + Q + T G N + V + V P ++ +
Sbjct: 126 MDDPWHYRNKAQFQLRKNKQTQKTEAGLYEANSHQLVPITDCLVQEPRTQKVMNTVVQLL 185
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
+F D P+++ NSG +R + VR G G+ +V+ I +
Sbjct: 186 NKF----DAPIYDERTNSGIFRTIMVRIGVKTGE----------------LQVVFITRSK 225
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
+A++ ERL + + + T+LV+ D +V +A
Sbjct: 226 KFPQKNAMIREINERLPEVVSIMQNVQAQK---TSLVMGDE--TIHVWGKEA-------- 272
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
I + I+ + F +SP AFFQ+N E LY G D PD +
Sbjct: 273 ----------------IEEQINEVTFDLSPRAFFQLNPQQTELLYGEGIKALDAQPDETI 316
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
D CG GTIGL++A +V V G++ A++DA RNAE G N R+ AE V+
Sbjct: 317 VDAYCGVGTIGLSVAKKVKEVRGMDTVPQAIADAKRNAERLGYHNTRYEVGTAEQVLPKW 376
Query: 666 LKDYLNP 672
L + P
Sbjct: 377 LNEGFQP 383
>gi|289550385|ref|YP_003471289.1| RNA methyltransferase, TrmA family [Staphylococcus lugdunensis
HKU09-01]
gi|385784015|ref|YP_005760188.1| putative RNA methyltransferase [Staphylococcus lugdunensis N920143]
gi|418413691|ref|ZP_12986907.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
lugdunensis ACS-027-V-Sch2]
gi|289179917|gb|ADC87162.1| RNA methyltransferase, TrmA family [Staphylococcus lugdunensis
HKU09-01]
gi|339894271|emb|CCB53540.1| putative RNA methyltransferase [Staphylococcus lugdunensis N920143]
gi|410877329|gb|EKS25221.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
lugdunensis ACS-027-V-Sch2]
Length = 461
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/366 (23%), Positives = 146/366 (39%), Gaps = 72/366 (19%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L HMSY QL KK + + + + + + + P +
Sbjct: 90 LQHMSYEAQLAMKKEQVVNLFHRKGQFTDTVINDTIGMDN-----------PWR------ 132
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
YRNK + +G +G+ +R+ + + C + + +
Sbjct: 133 ------YRNKSQVPIGQDKMNHKIMGY----YRQRSHDIIDMDSCLIQDKQHQDIMNHVK 182
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
+++ + + ++N G R L +R G E+M+I +
Sbjct: 183 KWINEYHISIYNERTKKGVLRHLVIRTGHYT------------------DEIMVIFVTNG 224
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
+ F A N E+L +AF P++ T++ + SNV L
Sbjct: 225 SKFKHA--NMLVEQLKQAF--------PNI--TSIKQNINNSHSNVIMGQQSATLYG--- 269
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
+ +I D +S++ F IS +F+Q+N+ EKLY D+A L ++
Sbjct: 270 ------------KDKIVDQLSDITFKISDQSFYQINSSQTEKLYQKAIDYAQLDGQEIVL 317
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
D CG GTIGL +A V G+E+ SA+ DA +NA +N + N FVC KAEDV+
Sbjct: 318 DTYCGIGTIGLYMAPVAKHVYGVEVVPSAIKDARQNALVNDLHNTTFVCGKAEDVIMDWQ 377
Query: 667 KDYLNP 672
++ + P
Sbjct: 378 REGIQP 383
>gi|415898696|ref|ZP_11551419.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E4453]
gi|416136825|ref|ZP_11598763.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E4452]
gi|430827656|ref|ZP_19445788.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0269]
gi|430871313|ref|ZP_19483705.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1575]
gi|431146178|ref|ZP_19499075.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1620]
gi|431746215|ref|ZP_19535049.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2134]
gi|431781866|ref|ZP_19570006.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E6012]
gi|431785757|ref|ZP_19573780.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E6045]
gi|364089826|gb|EHM32474.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E4453]
gi|364091650|gb|EHM34094.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E4452]
gi|430484258|gb|ELA61279.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0269]
gi|430558011|gb|ELA97445.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1575]
gi|430575718|gb|ELB14415.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1620]
gi|430608984|gb|ELB46190.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2134]
gi|430646916|gb|ELB82377.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E6045]
gi|430648267|gb|ELB83674.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E6012]
Length = 457
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 109/409 (26%), Positives = 165/409 (40%), Gaps = 83/409 (20%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLK-VKS---ARDVVTPLAHMSYSVQL 316
E+A+PGE E G++ G G E + V++ R + PLAH+ Y QL
Sbjct: 38 ENALPGEEVEILVVKAGNKFGYGKVETFITQSPDRQPVENNALLRTGIAPLAHLKYEQQL 97
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K+ + ++ K I K E+ LP +G GYRNK
Sbjct: 98 VFKQKQVEHVMAK------------------IAKMPEVPVLPT-----VGMAEPFGYRNK 134
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + V + + P + + A K + ++ LQ+ +
Sbjct: 135 AQIPVR-RIDGQLATGFYKKNSHDLVPIEDFYIQDPVIDQ-AIK---VVRDILQRFQVRG 189
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
+N KN G R + +R G + S M++ V+
Sbjct: 190 YNEEKNEGQLRHIIIRRG-------------------HYSHEMMVVLVT----------- 219
Query: 497 EFERLAKAFAAG--ATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLLSIPKADGEPEE 553
R K F + A A LP VIQ+ ++ +NV D L
Sbjct: 220 ---RKEKFFKSKEIAEAIHEELPEVVSVIQNINEEKTNVILGDKEKVLYG---------- 266
Query: 554 SNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTG 613
D +E D + + IS +F+QVNT AE LY ++A+L ++ D G G
Sbjct: 267 -RDYIE----DQLLGKTYRISAKSFYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIG 321
Query: 614 TIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
TIGL+LA RV V G+E+ A+ DA NA N I+N + KAE VM
Sbjct: 322 TIGLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENVHYEVGKAEKVM 370
>gi|340399192|ref|YP_004728217.1| RNA methyltransferase yljE [Streptococcus salivarius CCHSS3]
gi|387761653|ref|YP_006068630.1| 23S rRNA-methyltransferase [Streptococcus salivarius 57.I]
gi|338743185|emb|CCB93693.1| uncharacterized RNA methyltransferase yljE [Streptococcus
salivarius CCHSS3]
gi|339292420|gb|AEJ53767.1| 23S rRNA-methyltransferase [Streptococcus salivarius 57.I]
Length = 456
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 100/417 (23%), Positives = 165/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLA----GDGSGLKVKSARDVVTPLAHMSYSVQL 316
++A+PGE+ + G G E + R + HM+Y QL
Sbjct: 33 DNALPGEVIKMRVLKLKKNIGFGKVEEYVTLSPNRNQDIDATYLRSGIADFGHMTYEEQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K+ + L K G+S ++ LG YRNK
Sbjct: 93 KFKRKQVVDNLYKTA---------GIS--------------DVEIAETLGMETPYAYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF-QEFLQQSDLP 435
+ V ++ + GF N + + P++ + + +F ++ L++ DL
Sbjct: 130 AQVPVR-RVKGQLETGFYRKNSHDLI-----PIEDFLIQDKEIDKLIVFVRDLLRRYDLK 183
Query: 436 VWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVN 495
++ + +G R L VR G G+ M++ V++
Sbjct: 184 PYDEKEQTGLIRHLVVRRGHYSGQ-------------------MMLVFVTT--------R 216
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
+ R+ + A + + P +IQ+ + A R L G+
Sbjct: 217 PKVFRIDQVIAK----ITEAFPNVVSIIQNINDKNTNAIFGKEFRTLY-----GQDT--- 264
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
I DS+ + IS +F+QVNT AEKLY D++DL D+++ D G GTI
Sbjct: 265 ------ITDSMLGNDYEISAQSFYQVNTEMAEKLYQTAIDFSDLNSDSIVIDAYSGIGTI 318
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL+ A +V V G+E+ +AV DA +NAE NGI N +V AE+ M KD + P
Sbjct: 319 GLSFAKQVKEVYGVEVIETAVEDAKKNAERNGITNAHYVADSAENAMAKWSKDGIKP 375
>gi|424835160|ref|ZP_18259830.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sporogenes
PA 3679]
gi|365978287|gb|EHN14379.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sporogenes
PA 3679]
Length = 451
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 127/295 (43%), Gaps = 47/295 (15%)
Query: 363 GILGSPLVNGYRNKCEFSVG-YSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKY 421
G+ SP YRNK EF+ G T+G + N + V+ +C V +
Sbjct: 114 GVEKSPEEYEYRNKMEFTFGDMEKGGDLTLGMHVKNRSFSIVTVD---NCEIVDKDFRSI 170
Query: 422 ASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLI 481
+ ++ + LP + + GF R L +R+ ++ G+ L VNI
Sbjct: 171 LTSVVDYFNKKGLPKYRVMSHEGFLRNLVIRKAKNTGEIL-----------VNI------ 213
Query: 482 AQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRL 541
S FD F+ + G + ++ + +S+V D L +
Sbjct: 214 VTTSQMEFD-------FKEMVDILLKGEYKGE----IKGILHTINDTLSDVVQVDK-LEI 261
Query: 542 LSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGP 601
L D I + + L+F I+P AFFQ N+ AEKLYS+ D+
Sbjct: 262 LY----------GRD----YIIEELLGLKFKIAPEAFFQTNSKGAEKLYSIVKDFLGDAS 307
Query: 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCA 656
++FD+ CGTGTIG +A + VIG+E+ AV A+ NA++NG+ NC F+
Sbjct: 308 SKVVFDLYCGTGTIGQIVAPKAKKVIGVELIEEAVKAANENAKLNGLDNCEFIAG 362
>gi|363898588|ref|ZP_09325110.1| hypothetical protein HMPREF9625_01794 [Oribacterium sp. ACB1]
gi|395208882|ref|ZP_10398047.1| methyltransferase domain protein [Oribacterium sp. ACB8]
gi|361960493|gb|EHL13729.1| hypothetical protein HMPREF9625_01794 [Oribacterium sp. ACB1]
gi|394705483|gb|EJF13009.1| methyltransferase domain protein [Oribacterium sp. ACB8]
Length = 463
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 114/454 (25%), Positives = 187/454 (41%), Gaps = 101/454 (22%)
Query: 354 IGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLG-NFREGVTAVEEPVDC- 411
+G P EGI+ SP YRNK EFS G + P LG + + + DC
Sbjct: 40 MGDFP--FEGIISSPKKEAYRNKMEFSFGDQEKDGP---LCLGLHQKRSFFNILNTEDCR 94
Query: 412 ---PNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLD--VENL 466
P++ +I +E+ + +++ K+ G+ R L +R G G+ L V NL
Sbjct: 95 LPHPDMGKILLAT----REYFLDKGVGYFHKKKHEGYLRHLLIRRGEKTGEILVSLVHNL 150
Query: 467 --EVNISEVNISEVMLIAQVSSATFDDAVVNS--EFERLA--------KAFAAGATASSP 514
E + SE +I + + + V + ++ V+ + E E + +A G S
Sbjct: 151 FAEKSFSEQDILQSLAVKNVRQESEENCVIETGGEAESIQDKKTFISEEALLKGWCESLL 210
Query: 515 SLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEAR--IHDSISNLRFC 572
SL + G+ + AD + +++ + ++ + L F
Sbjct: 211 SLEKEGKLEGHFAGILHTKNESL---------ADAVVNQGTEILYGKDYFYEELLGLNFK 261
Query: 573 ISPTAFFQVNTLAAEKLYSLGGDWADLGPDT----LLFDVCCGTGTIGLTLAHRVGMVIG 628
I+P +FFQ N+L AEKLY ++ADL L+FD+ GTGTI ++ G
Sbjct: 262 ITPFSFFQTNSLGAEKLYEKIREYADLSNTAVEKPLIFDLYSGTGTITQLMSEVAKEAYG 321
Query: 629 IEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEI 688
+E+ AV A NA+ NGI+NCRF+ A DV+ L E+++ A S
Sbjct: 322 VEIIEEAVESAKENAKENGIENCRFI---AGDVLKVL---------EQNKAAMNQS---- 365
Query: 689 TIAEEKDSSRDNVPENEGCSGQDPENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLAQPF 748
DIA+ N D GN L +P
Sbjct: 366 -------------------------GDIAEGNSA-------------DKEENGNILPRP- 386
Query: 749 KNVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
+VDPPR G+H ++++ + + RL+++
Sbjct: 387 --DFIVVDPPRDGMHKKALELIIRYG-VNRLIYV 417
>gi|418018183|ref|ZP_12657739.1| RNA methyltransferase yljE [Streptococcus salivarius M18]
gi|345527032|gb|EGX30343.1| RNA methyltransferase yljE [Streptococcus salivarius M18]
Length = 452
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 100/417 (23%), Positives = 165/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLA----GDGSGLKVKSARDVVTPLAHMSYSVQL 316
++A+PGE+ + G G E + R + HM+Y QL
Sbjct: 33 DNALPGEVIKMRVLKLKKNIGFGKVEEYVTLSPNRNQDIDATYLRSGIADFGHMTYEEQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K+ + L K G+S ++ LG YRNK
Sbjct: 93 KFKRKQVVDNLYKTA---------GIS--------------DVEVAETLGMDTPYAYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF-QEFLQQSDLP 435
+ V ++ + GF N + + P++ + + +F ++ L++ DL
Sbjct: 130 AQVPVR-RVKGQLETGFYRKNSHDLI-----PIEDFLIQDKEIDKLIVFVRDLLRRYDLK 183
Query: 436 VWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVN 495
++ + +G R L VR G G+ M++ V++
Sbjct: 184 PYDEKEQTGLIRHLVVRRGHYSGQ-------------------MMLVFVTT--------R 216
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
+ R+ + A + + P +IQ+ + A R L G+
Sbjct: 217 PKVFRIDQVIAM----ITEAFPSVVSIIQNINDKNTNAIFGKEFRTLY-----GQDT--- 264
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
I DS+ + IS +F+QVNT AEKLY D++DL D+++ D G GTI
Sbjct: 265 ------ITDSMLGNDYEISAQSFYQVNTEMAEKLYQTAIDFSDLNSDSIVIDAYSGIGTI 318
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL+ A +V V G+E+ +AV DA +NAE NGI N +V AE+ M KD + P
Sbjct: 319 GLSFAKQVKEVYGVEVIETAVEDAKKNAERNGITNAHYVADSAENAMAKWSKDGIKP 375
>gi|431370170|ref|ZP_19509869.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1627]
gi|430583917|gb|ELB22275.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1627]
Length = 457
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 109/409 (26%), Positives = 165/409 (40%), Gaps = 83/409 (20%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLK-VKS---ARDVVTPLAHMSYSVQL 316
E+A+PGE E G++ G G E + V++ R + PLAH+ Y QL
Sbjct: 38 ENALPGEEVEILVVKAGNKFGYGKVETFITQSPDRQPVENNALLRTGIAPLAHLKYEQQL 97
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K+ + ++ K I K E+ LP +G GYRNK
Sbjct: 98 VFKQKQVEHVMAK------------------IAKMPEVPVLPT-----VGMAEPFGYRNK 134
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + V + + P + + A K + ++ LQ+ +
Sbjct: 135 AQIPVR-RIDGQLATGFYKKNSHDLVPIEDFYIQDPVIDQ-AIK---VVRDILQRFQVRG 189
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
+N KN G R + +R G + S M++ V+
Sbjct: 190 YNEEKNEGQLRHIIIRRG-------------------HYSHEMMVVLVT----------- 219
Query: 497 EFERLAKAFAAG--ATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLLSIPKADGEPEE 553
R K F + A A LP VIQ+ ++ +NV D L
Sbjct: 220 ---RKEKFFKSKEIAEAIHEELPEVVSVIQNINEEKTNVILGDKEKVLYG---------- 266
Query: 554 SNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTG 613
D +E D + + IS +F+QVNT AE LY ++A+L ++ D G G
Sbjct: 267 -RDYIE----DQLLGKTYRISAKSFYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIG 321
Query: 614 TIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
TIGL+LA RV V G+E+ A+ DA NA N I+N + KAE VM
Sbjct: 322 TIGLSLADRVYKVYGMEVIPEAIEDAQFNALNNKIENVHYEVGKAEKVM 370
>gi|257898308|ref|ZP_05677961.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
Com15]
gi|257836220|gb|EEV61294.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
Com15]
Length = 457
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 109/409 (26%), Positives = 165/409 (40%), Gaps = 83/409 (20%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLK-VKS---ARDVVTPLAHMSYSVQL 316
E+A+PGE E G++ G G E + V++ R + PLAH+ Y QL
Sbjct: 38 ENALPGEEVEILVVKAGNKFGYGKVETFITQSPDRQPVENNALLRTGIAPLAHLKYEQQL 97
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K+ + ++ K I K E+ LP +G GYRNK
Sbjct: 98 VFKQKQVEHVMAK------------------IAKMPEVPVLPT-----VGMAEPFGYRNK 134
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + V + + P + + A K + ++ LQ+ +
Sbjct: 135 AQIPVR-RIDGQLATGFYKKNSHDLVPIEDFYIQDPVIDQ-AIK---VVRDILQRFQVRG 189
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
+N KN G R + +R G + S M++ V+
Sbjct: 190 YNEEKNEGQLRHIIIRRG-------------------HYSHEMMVVLVT----------- 219
Query: 497 EFERLAKAFAAG--ATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLLSIPKADGEPEE 553
R K F + A A LP VIQ+ ++ +NV D L
Sbjct: 220 ---RKEKFFKSKEIAEAIHEELPEVVSVIQNINEEKTNVILGDKEKVLYG---------- 266
Query: 554 SNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTG 613
D +E D + + IS +F+QVNT AE LY ++A+L ++ D G G
Sbjct: 267 -RDYIE----DQLLGKTYRISAKSFYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIG 321
Query: 614 TIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
TIGL+LA RV V G+E+ A+ DA NA N I+N + KAE VM
Sbjct: 322 TIGLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENVHYEVGKAEKVM 370
>gi|418027718|ref|ZP_12666332.1| Methyltransferase [Streptococcus thermophilus CNCM I-1630]
gi|354689984|gb|EHE89948.1| Methyltransferase [Streptococcus thermophilus CNCM I-1630]
Length = 453
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 100/417 (23%), Positives = 165/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLA----GDGSGLKVKSARDVVTPLAHMSYSVQL 316
++A+PGE+ G G E + R + HM+Y+ QL
Sbjct: 33 DNALPGEVIRMRVLKLKKNIGFGKVEEYVTLSPSRNQDINATYLRSGIADFGHMTYTEQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K+ + L K G+S ++ LG YRNK
Sbjct: 93 KFKRKQVVDNLYKTA---------GIS--------------DVEVAETLGMETPYAYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF-QEFLQQSDLP 435
+ V ++ + GF N + + P++ + + +F ++ L++ DL
Sbjct: 130 AQVPVR-RVKGQLETGFYRKNSHDLI-----PIEDFLIQDKEIDKLIVFVRDLLRRYDLK 183
Query: 436 VWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVN 495
++ + +G R L VR G G+ M++ V++
Sbjct: 184 PYDEKEQTGLIRHLVVRRGHYSGQ-------------------MMLVFVTT--------K 216
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
+ R+ + A T + PS+ +IQ+ + A R L + N
Sbjct: 217 PKVFRIDQVIAK-ITEAFPSI---VSIIQNINDKNTNAIFGKEFRTLYGQDTITDRMLGN 272
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
D + IS +F+QVNT AEKLY + D++DL D+++ D G GTI
Sbjct: 273 D--------------YEISAQSFYQVNTEMAEKLYQIAIDFSDLNSDSIVIDAYSGIGTI 318
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL+ A +V V G+E+ +AV DA +NAE NGI N +V AE+ M KD + P
Sbjct: 319 GLSFAKQVKEVYGVEVIETAVEDAKKNAERNGITNAHYVADSAENAMAKWSKDGIKP 375
>gi|425054561|ref|ZP_18458066.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
505]
gi|403035513|gb|EJY46899.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
505]
Length = 457
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 109/409 (26%), Positives = 165/409 (40%), Gaps = 83/409 (20%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLK-VKS---ARDVVTPLAHMSYSVQL 316
E+A+PGE E G++ G G E + V++ R + PLAH+ Y QL
Sbjct: 38 ENALPGEEVEILVVKAGNKFGYGKVETFITQSPDRQPVENNALLRTGIAPLAHLKYEQQL 97
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K+ + ++ K I K E+ LP +G GYRNK
Sbjct: 98 VFKQKQVEHVMAK------------------IAKMPEVPVLPT-----VGMEEPFGYRNK 134
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + V + + P + + A K + ++ LQ+ +
Sbjct: 135 AQIPVR-RIDGQLATGFYKKNSHDLVPIEDFYIQDPVIDQ-AIK---VVRDILQRFQVRG 189
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
+N KN G R + +R G + S M++ V+
Sbjct: 190 YNEEKNEGQLRHIIIRRG-------------------HYSHEMMVVLVT----------- 219
Query: 497 EFERLAKAFAAG--ATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLLSIPKADGEPEE 553
R K F + A A LP VIQ+ ++ +NV D L
Sbjct: 220 ---RKEKFFKSKEIAEAIHEELPEVVSVIQNINEEKTNVILGDKEKVLYG---------- 266
Query: 554 SNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTG 613
D +E D + + IS +F+QVNT AE LY ++A+L ++ D G G
Sbjct: 267 -RDYIE----DQLLGKTYRISAKSFYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIG 321
Query: 614 TIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
TIGL+LA RV V G+E+ A+ DA NA N I+N + KAE VM
Sbjct: 322 TIGLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENVHYEVGKAEKVM 370
>gi|430819927|ref|ZP_19438571.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0045]
gi|430833053|ref|ZP_19451066.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0679]
gi|430440130|gb|ELA50407.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0045]
gi|430486508|gb|ELA63344.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0679]
Length = 457
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 109/409 (26%), Positives = 165/409 (40%), Gaps = 83/409 (20%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLK-VKS---ARDVVTPLAHMSYSVQL 316
E+A+PGE E G++ G G E + V++ R + PLAH+ Y QL
Sbjct: 38 ENALPGEEVEILVVKAGNKFGYGKVETFITQSPDRQPVENNALLRTGIAPLAHLKYEQQL 97
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K+ + ++ K I K E+ LP +G GYRNK
Sbjct: 98 VFKQKQVEHVMAK------------------IAKMPEVPVLPT-----VGMAEPFGYRNK 134
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + V + + P + + A K + ++ LQ+ +
Sbjct: 135 AQIPVR-RIDGQLATGFYKKNSHDLVPIEDFYIQDPVIDQ-AIK---VVRDILQRFQVRG 189
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
+N KN G R + +R G + S M++ V+
Sbjct: 190 YNEEKNEGQLRHIIIRRG-------------------HYSHEMMVVLVT----------- 219
Query: 497 EFERLAKAFAAG--ATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLLSIPKADGEPEE 553
R K F + A A LP VIQ+ ++ +NV D L
Sbjct: 220 ---RKEKFFKSKEIAEAIHEELPEVVSVIQNINEEKTNVILGDKEKVLYG---------- 266
Query: 554 SNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTG 613
D +E D + + IS +F+QVNT AE LY ++A+L ++ D G G
Sbjct: 267 -RDYIE----DQLLGKTYRISAKSFYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIG 321
Query: 614 TIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
TIGL+LA RV V G+E+ A+ DA NA N I+N + KAE VM
Sbjct: 322 TIGLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENVHYEVGKAEKVM 370
>gi|425701381|gb|AFX92543.1| putative RNA methyltransferase [Megavirus courdo11]
Length = 379
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 129/311 (41%), Gaps = 57/311 (18%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYA 422
I+ SP++N YRNK F VG+ ++ +G+ L + + V D ++
Sbjct: 36 SIISSPIINFYRNKLRFDVGFDIKGNIVIGYALPKKQSNIRYVFPADDMKHLHPRMKLII 95
Query: 423 SIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIA 482
Q +L + ++ + N+ +T+R + + N +N E +I ++ +
Sbjct: 96 YWLQSYLNNNLKSWYSYYHNTSTLSSITIRTSFHTNDSIVIVN--INCEEYDIDDI--VN 151
Query: 483 QVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLL 542
+ F D F + K P T +I H
Sbjct: 152 YFTQMDFSDW---ENFNFVIK------------FPKTQHIIIGHD--------------- 181
Query: 543 SIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYS----LGGDWAD 598
IH+ + F IS +FFQVNTLA E LY+ L + +
Sbjct: 182 ------------------YIHEKLDQYTFKISHESFFQVNTLATEVLYNTIKLLTIKYFN 223
Query: 599 LGPDT-LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAK 657
D+ +L D+CCGTGTI LA V+GI++ +S++ DA+ N N I+N F+CA
Sbjct: 224 QCHDSNILLDLCCGTGTIATYLASTFTHVVGIDIKSSSIIDANENKHHNNIQNIDFICAP 283
Query: 658 AEDVMGSLLKD 668
E+V+ ++ D
Sbjct: 284 IENVLDQVIID 294
>gi|153956154|ref|YP_001396919.1| tRNA (uracil-5-)-methyltransferase-like protein [Clostridium
kluyveri DSM 555]
gi|146349012|gb|EDK35548.1| TRNA (uracil-5-)-methyltransferase-related protein [Clostridium
kluyveri DSM 555]
Length = 469
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 88/361 (24%), Positives = 153/361 (42%), Gaps = 60/361 (16%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H+SY QL K+N + L+++ + +S + I + G KL +G
Sbjct: 86 LQHLSYDGQLSFKENRVKDCLERIGK------LQVISGEQSIHQH----GSVTKLYHTIG 135
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
YRNK + VG S G +G + + + C SE + K + +
Sbjct: 136 MENPYRYRNKVQLPVGSSKN-----GINIGFYAKKSHEIINMTSCFIQSETSDKIVKLIR 190
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
+++++ ++ +N G R + +RE + + + V+++ VS
Sbjct: 191 QWIEKYNIEPYNEKNGKGIIRHIMIREAFTTAEIM----------------VVIVTAVSH 234
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
+ K F T + P + ++V ++ +NV + L
Sbjct: 235 LPYK------------KEFIEIITRNVPVIK--SIVQNINRDRTNVIMGKECIILWG--- 277
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
I+D I +F ISP +FFQVN + E LY+ ++A L + ++F
Sbjct: 278 ------------RDTINDYIGKFKFSISPLSFFQVNPVQTEVLYNKVLEYAGLTGNEVIF 325
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
D CGTGTI L L+ + V G+E+ A+ +A+ NA NGI N F+ K+E V+ L+
Sbjct: 326 DAYCGTGTISLFLSQKAKKVYGVEIIPQAIENANMNAAENGIDNVEFITGKSEKVIPELI 385
Query: 667 K 667
K
Sbjct: 386 K 386
>gi|256003527|ref|ZP_05428517.1| RNA methyltransferase, TrmA family [Clostridium thermocellum DSM
2360]
gi|281418309|ref|ZP_06249329.1| RNA methyltransferase, TrmA family [Clostridium thermocellum JW20]
gi|385779725|ref|YP_005688890.1| TrmA family RNA methyltransferase [Clostridium thermocellum DSM
1313]
gi|419722395|ref|ZP_14249539.1| RNA methyltransferase, TrmA family [Clostridium thermocellum AD2]
gi|419725901|ref|ZP_14252935.1| RNA methyltransferase, TrmA family [Clostridium thermocellum YS]
gi|255992551|gb|EEU02643.1| RNA methyltransferase, TrmA family [Clostridium thermocellum DSM
2360]
gi|281409711|gb|EFB39969.1| RNA methyltransferase, TrmA family [Clostridium thermocellum JW20]
gi|316941405|gb|ADU75439.1| RNA methyltransferase, TrmA family [Clostridium thermocellum DSM
1313]
gi|380770677|gb|EIC04563.1| RNA methyltransferase, TrmA family [Clostridium thermocellum YS]
gi|380781580|gb|EIC11234.1| RNA methyltransferase, TrmA family [Clostridium thermocellum AD2]
Length = 455
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 86/369 (23%), Positives = 148/369 (40%), Gaps = 99/369 (26%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLP-CKLEGIL 365
L HM+Y L K N + + + R IGGL + +
Sbjct: 85 LQHMNYEASLRFKTNVVRESI------------------------RRIGGLENVVVHDTV 120
Query: 366 GSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTA------VEEPVDCPNVS---E 416
G YRNK ++ +G +++G+ A E +DC +
Sbjct: 121 GMEQPVNYRNKAQYPIG--------------RYKDGIRAGFYAKRSHEIIDCATCTIQHS 166
Query: 417 IACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNIS 476
++ + ++ +E+++++++ ++ G R + R G G
Sbjct: 167 VSDRVRAVVKEYIEKNNISTYDEITGEGLVRHIMTRVGFKTG------------------ 208
Query: 477 EVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLP-LTALVIQDHQGVSNVAPA 535
EVM++ ++ +RL K +P + ++V+ + +NV
Sbjct: 209 EVMVVLVINGRNIPSQ--KKLVDRLVK-----------EIPEIKSVVLNVNTKRTNVILG 255
Query: 536 DAPLRLLSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLG 593
D N VV R I D I +F ISP +FFQVN + E LY
Sbjct: 256 D-----------------ENIVVYGRDTITDYIGEFKFNISPLSFFQVNPVQTEVLYRKA 298
Query: 594 GDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRF 653
D+A L +FD+ CG GTI L L+ + + G+E+ +AV DA NA++NG++N F
Sbjct: 299 LDYAQLTGKETVFDLYCGIGTISLFLSKKAKRIYGVEVVEAAVKDAWENAKVNGVENAEF 358
Query: 654 VCAKAEDVM 662
+ +AE V+
Sbjct: 359 IVGEAEKVI 367
>gi|363540687|ref|YP_004894539.1| mg488 gene product [Megavirus chiliensis]
gi|350611852|gb|AEQ33296.1| putative RNA methyltransferase [Megavirus chiliensis]
Length = 379
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 129/311 (41%), Gaps = 57/311 (18%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYA 422
I+ SP++N YRNK F VG+ ++ +G+ L + + V D ++
Sbjct: 36 SIISSPIINFYRNKLRFDVGFDIKGNIVIGYALPKKQSNIRYVFPADDMKHLHPRMKLII 95
Query: 423 SIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIA 482
Q +L + ++ + N+ +T+R + + N +N E +I ++ +
Sbjct: 96 YWLQSYLNNNLKSWYSYYHNTSTLSSITIRTSFHTNDSIVIVN--INCEEYDIDDI--VN 151
Query: 483 QVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLL 542
+ F D F + K P T +I H
Sbjct: 152 YFTQMDFSDW---ENFNFVIK------------FPKTQHIIIGHD--------------- 181
Query: 543 SIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYS----LGGDWAD 598
IH+ + F IS +FFQVNTLA E LY+ L + +
Sbjct: 182 ------------------YIHEKLDQYTFKISHESFFQVNTLATEVLYNTIKLLTIKYFN 223
Query: 599 LGPDT-LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAK 657
D+ +L D+CCGTGTI LA V+GI++ +S++ DA+ N N I+N F+CA
Sbjct: 224 QCHDSNILLDLCCGTGTIATYLASTFTHVVGIDIKSSSIIDANENKHHNNIQNIDFICAP 283
Query: 658 AEDVMGSLLKD 668
E+V+ ++ D
Sbjct: 284 IENVLDQVIID 294
>gi|312863381|ref|ZP_07723619.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
vestibularis F0396]
gi|311100917|gb|EFQ59122.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
vestibularis F0396]
Length = 453
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 100/417 (23%), Positives = 165/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLA----GDGSGLKVKSARDVVTPLAHMSYSVQL 316
++A+PGE+ + G G E + R + HM+Y QL
Sbjct: 33 DNALPGEVIKMRVLKLKKNIGFGKVEEYVTLSPNRNQDIDATYLRSGIADFGHMTYEEQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K+ + L K G+S ++ LG YRNK
Sbjct: 93 KFKRKQVVDNLYKTA---------GIS--------------DVEVAETLGMDTPYAYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF-QEFLQQSDLP 435
+ V ++ + GF N + + P++ + + +F ++ L++ DL
Sbjct: 130 AQVPVR-RVKGQLETGFYRKNSHDLI-----PIEDFLIQDKEIDKLIVFVRDLLRRYDLK 183
Query: 436 VWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVN 495
++ + +G R L VR G G+ M++ V++
Sbjct: 184 PYDEKEQTGLIRHLVVRRGHYSGQ-------------------MMLVFVTT--------R 216
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
+ R+ + A + + P +IQ+ + A R L G+
Sbjct: 217 PKVFRIDQVIAM----ITEAFPSVVSIIQNINDKNTNAIFGKEFRTLY-----GQDT--- 264
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
I DS+ + IS +F+QVNT AEKLY D++DL D+++ D G GTI
Sbjct: 265 ------ITDSMLGNDYEISAQSFYQVNTEMAEKLYQTAIDFSDLNSDSIVIDAYSGIGTI 318
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL+ A +V V G+E+ +AV DA +NAE NGI N +V AE+ M KD + P
Sbjct: 319 GLSFAKQVKEVYGVEVIETAVEDAKKNAERNGITNAHYVADSAENAMAKWSKDGIKP 375
>gi|70726057|ref|YP_252971.1| hypothetical protein SH1056 [Staphylococcus haemolyticus JCSC1435]
gi|68446781|dbj|BAE04365.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 454
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 85/356 (23%), Positives = 149/356 (41%), Gaps = 72/356 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L HM+Y QL K++ + + RKA + + ++ IG +
Sbjct: 85 LQHMTYDAQLAMKQSQVTNLFH------RKAQFSNTII------NKTIG---------MD 123
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
P YRNK + +G K +G+ +R+ + + C ++ + +
Sbjct: 124 HPW--HYRNKSQLPIGKDRDGKAIIGY----YRQRSHDIIDMDSCLIQDDVHQDIMNHVK 177
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
+++ D+ V+N G R L +R G + M++ +
Sbjct: 178 QWIIDYDISVYNESTKKGLLRHLVIRTGYYS------------------DDKMVVFVTNG 219
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
F A + E+L + F P++ T++ ++ SNV + + L
Sbjct: 220 KNFQQASI--LVEKLKETF--------PNI--TSIKQNINKSHSNVIMGEQSVTLYG--- 264
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
+ +I D +S+ F IS +F+Q+N+ EKLY ++A L + +
Sbjct: 265 ------------KDKIADQLSDTTFKISDQSFYQINSSQTEKLYQQAIEYAQLTGEETVL 312
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
D CG GTIGL +A V G+E+ SA+ DA +NA +NG +N FVC KAE+V+
Sbjct: 313 DTYCGIGTIGLYMAPVAKHVYGVEVVPSAIKDAQQNATLNGFENTTFVCGKAEEVI 368
>gi|408419696|ref|YP_006761110.1| 23S rRNA mehtyltransferase RumA [Desulfobacula toluolica Tol2]
gi|405106909|emb|CCK80406.1| RumA: predicted 23S rRNA mehtyltransferase [Desulfobacula toluolica
Tol2]
Length = 462
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 111/472 (23%), Positives = 190/472 (40%), Gaps = 107/472 (22%)
Query: 211 SVEQLKNAVEELEGISIGNKTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAE 270
S+++ K E+ ++ G + L + P D+ I + + K+ +S G+L +
Sbjct: 2 SIKKRKAYELEITDLAFGGRGLAKPDGFPVFIDRCIPGDVVFAKITKK-KKSWAEGKLIK 60
Query: 271 AHASSNGHEDGNGNDEGLAGDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKL 330
S+ ++G G G K + + Y +QLE+KK + + +
Sbjct: 61 ILQESSLRKEGKCQYCNFCG---GCKWQ----------QIGYDLQLEYKKRHVTESM--- 104
Query: 331 TRNARKACPNGVSLPEWIMKSREIGGLP-CKLEGILGSPLVNGYRNKCEFSVGYSLQAKP 389
+ IGGL ++ ++ S + YRNK EFS P
Sbjct: 105 ---------------------QHIGGLKDVLVKDVIPSDNIYEYRNKMEFSCSSKRWLLP 143
Query: 390 T------------VGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVW 437
+G + + V ++ C + ++ + + F+++SDLP +
Sbjct: 144 WELENEEIKKDFGIGLHVPGTFDKVIDIKR---CEIMPDLGNQILDDVRNFIKESDLPAY 200
Query: 438 NRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVN-- 495
N + GFWR L +R S FD +VN
Sbjct: 201 NLRTHEGFWRFLMLRH--------------------------------SVAFDTWMVNIV 228
Query: 496 SEFERL--AKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEE 553
+ F+++ + A+ T + P Q ++N+ A + + SI K EE
Sbjct: 229 TTFKQMDVVRDLASVLTQNHP---------QIKSVMNNITDAKSGV---SIGK-----EE 271
Query: 554 SNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTG 613
+ I + + F ISP +FFQ NT + E LY+ ++A L + D+ GTG
Sbjct: 272 ICLYGKDHIKERLGKFVFKISPNSFFQTNTRSCENLYAKVSEYAALTGKETVIDLYSGTG 331
Query: 614 TIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
TI + L+ + MV GIE+ SAV DA NA++NGI+NC F +DV+ L
Sbjct: 332 TIPIWLSDQAKMVYGIEIVKSAVVDAKLNAQLNGIENCEFFEGDIKDVLPGL 383
>gi|306820250|ref|ZP_07453891.1| 23S rRNA (uracil-5-)-methyltransferase [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551704|gb|EFM39654.1| 23S rRNA (uracil-5-)-methyltransferase [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 452
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 137/306 (44%), Gaps = 54/306 (17%)
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQ-AKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYA 422
I+ SPL Y+NK EF+ G ++ + +G N G+ +VE DC V E Y
Sbjct: 115 IVPSPLQKEYKNKMEFTFGNEVKDGELLIGLHKKNSPMGIVSVE---DCLLVDE---DYR 168
Query: 423 SIFQ---EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVM 479
+I + E+ + +LP ++ + G+ R L +R+G + + +
Sbjct: 169 TILKMTGEYFRAKNLPHYHIKSHEGYLRHLVIRKGENTKQ-------------------L 209
Query: 480 LIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL 539
LI V+++ D + SE+ + +A +T + ++ + +S+ D
Sbjct: 210 LINIVTTSQIDFDL--SEYVQKLQALKLEST-------IVGILHTTNDSLSDTVKDDKVD 260
Query: 540 RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
L + +D + +F ISP +FFQ NT AE LY + D
Sbjct: 261 VLFG---------------DNYFYDILLGNKFKISPFSFFQTNTKGAETLYKTAMEMID- 304
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659
G ++FD+ GTGTIG++L+ R VIGIE+ AV A NA+ N +KN F+ +
Sbjct: 305 GEKDIIFDLYSGTGTIGISLSARAKKVIGIEIVEEAVEMARENAQANNVKNVEFIAGDVK 364
Query: 660 DVMGSL 665
+ + L
Sbjct: 365 EEVSKL 370
>gi|315660149|ref|ZP_07913006.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus lugdunensis
M23590]
gi|315494830|gb|EFU83168.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus lugdunensis
M23590]
Length = 456
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 85/366 (23%), Positives = 146/366 (39%), Gaps = 72/366 (19%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L HMSY QL KK + + + + + + + P +
Sbjct: 85 LQHMSYEAQLAMKKEQVVNLFHRKGQFTDTVINDTIGMDN-----------PWR------ 127
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
YRNK + +G +G+ +R+ + + C + + +
Sbjct: 128 ------YRNKSQVPIGQDKMNHKIMGY----YRQRSHDIIDMDSCLIQDKQHQDIMNHVK 177
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
+++ + + ++N G R L +R G E+M+I +
Sbjct: 178 KWINEYHISIYNERTKKGVLRHLVIRTGHYT------------------DEIMVIFVTNG 219
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
+ F A N E+L +AF P++ T++ + SNV L
Sbjct: 220 SKFKHA--NMLVEQLKQAF--------PNI--TSIKQNINNSHSNVIMGQQSATLYG--- 264
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
+ +I D +S++ F IS +F+Q+N+ EKLY D+A L ++
Sbjct: 265 ------------KDKIVDQLSDITFKISDQSFYQINSSQTEKLYQKAIDYAQLDGQEIVL 312
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
D CG GTIGL +A V G+E+ SA+ DA +NA +N + N FVC KAEDV+
Sbjct: 313 DTYCGIGTIGLYIAPVAKHVYGVEVVPSAIKDARQNALVNDLHNTTFVCGKAEDVIMDWQ 372
Query: 667 KDYLNP 672
++ + P
Sbjct: 373 REGIQP 378
>gi|410455004|ref|ZP_11308888.1| TrmA family RNA methyltransferase [Bacillus bataviensis LMG 21833]
gi|409929553|gb|EKN66629.1| TrmA family RNA methyltransferase [Bacillus bataviensis LMG 21833]
Length = 456
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 91/367 (24%), Positives = 149/367 (40%), Gaps = 83/367 (22%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H+SY QL++K+N + Q+L ++ KLE ++
Sbjct: 88 LEHISYEGQLKYKENQVRQVLTRIG----------------------------KLEDVVV 119
Query: 367 SPLVN-----GYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKY 421
P++ YRNK + VG + K GF E V E + P ++E
Sbjct: 120 HPILGMENPWHYRNKAQVPVG-EIDGKLIAGFFKPRSHEIVDTNESLIQLPEINEAV--- 175
Query: 422 ASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLI 481
+E + + ++ + G R + R G+ G E+M++
Sbjct: 176 -QAVKEICNELGISAYHEESHKGVLRHIMARYGQQTG------------------ELMVV 216
Query: 482 AQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRL 541
+A F N E++ TA P + ++V + +NV + L
Sbjct: 217 VITRTADFPQK--NQLVEKI--------TARLPKV--KSIVHNVNSKRTNVIMGEKTSVL 264
Query: 542 LSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGP 601
N+V I+D I +++F IS +F+QVN + + LY ++A L
Sbjct: 265 WG-----------NEV----IYDYIGDVKFAISALSFYQVNPVQTKVLYDKALEYAGLSG 309
Query: 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661
+ + D CG GTI L LA R V G+E+ A+ DA RNA++NGI N F +AE V
Sbjct: 310 EESVIDAYCGIGTISLFLAQRARKVFGVEVVPEAIEDAKRNADLNGITNAEFAAGEAEIV 369
Query: 662 MGSLLKD 668
+ K+
Sbjct: 370 IPKWYKE 376
>gi|419799184|ref|ZP_14324548.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
parasanguinis F0449]
gi|385698514|gb|EIG28870.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
parasanguinis F0449]
Length = 452
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 107/417 (25%), Positives = 166/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDG----SGLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGE+ + G G E L + R + L H++Y QL
Sbjct: 33 ENALPGEVIRMRVLKVNKKIGYGKVEEYLEKSPHRNEELDLAYLRSGIADLGHLAYPEQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K + L K+ G+S E +P L + P+ YRNK
Sbjct: 93 KFKAKQVKDSLYKMA---------GISDIE----------VPLTLG--MDHPV--QYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + + + + P + ++ + + F DL
Sbjct: 130 AQVPVR-RVNGQVETGFFRKNSHDLMPIEDFYIQDPVIDQVVLALRDLIRRF----DLKP 184
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS-ATFDDAVVN 495
++ + SG R L VR G G E+M+I + F V+
Sbjct: 185 YDEKEQSGLIRNLVVRRGHHSG------------------EIMVILVTTRPKVFR---VD 223
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
E+L K F P V+Q+ + A R L G+
Sbjct: 224 QLIEQLIKQF-----------PAIKSVMQNINDQNTNAIFGKEWRTLY-----GQD---- 263
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
I D + F IS AF+QVNT AEKLY D+A+L + ++ D G GTI
Sbjct: 264 -----YITDQMLGNSFQISGPAFYQVNTEMAEKLYQTAIDFAELSEEDVVIDAYSGIGTI 318
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL++A V V G+E+ AV ++ +NA +NGI N +VC AE+ M + LK+ + P
Sbjct: 319 GLSVAKHVKEVYGVEVIPEAVENSQKNASLNGITNAHYVCDTAENAMKNWLKEGIQP 375
>gi|295101716|emb|CBK99261.1| 23S rRNA m(5)U-1939 methyltransferase [Faecalibacterium prausnitzii
L2-6]
Length = 548
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 134/353 (37%), Gaps = 76/353 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L HM Y+ +L K+ S+A R IGGL + L
Sbjct: 85 LRHMDYAAELRSKQESVADAF------------------------RRIGGLDVPVLDALP 120
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
SP V+ YRNK +F VG P +GF G V DC + +
Sbjct: 121 SPEVDRYRNKVQFPVGRDKNGAPCIGFYAGRTHRIVPCP----DCRLQPGVLNDIGNALC 176
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
F + ++ G R + +R G G+ + V L+
Sbjct: 177 SFFAAHGIQPYDEESGKGLVRHIFLRRGTHSGQIM----------------VCLVCTRPK 220
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
+ +V + E+ + + +++I + +NV + + L
Sbjct: 221 FPHSEELVTALREQFSD--------------IASVLINVNAKKTNVILGEETVSLYG--- 263
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
I D++ + + P +F+QVNTLAAE+LY + ++A L P +L
Sbjct: 264 ------------PGYIEDTLCGVPVRLGPLSFYQVNTLAAERLYGIAAEYAQLEPSDVLL 311
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEING---IKNCRFVCA 656
D+ CG GTIGL++A R +IG+E+ A+ A NA G RF CA
Sbjct: 312 DLYCGMGTIGLSMADRCRELIGVEIVPEAIDSAKANAARMGDAVAAKSRFFCA 364
>gi|69246826|ref|ZP_00604135.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium DO]
gi|257878457|ref|ZP_05658110.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,230,933]
gi|257882876|ref|ZP_05662529.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,231,502]
gi|257889346|ref|ZP_05668999.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,231,410]
gi|257894358|ref|ZP_05674011.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,231,408]
gi|260560044|ref|ZP_05832222.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium C68]
gi|261207467|ref|ZP_05922153.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium TC 6]
gi|289565878|ref|ZP_06446319.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
D344SRF]
gi|293559994|ref|ZP_06676502.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1162]
gi|294621045|ref|ZP_06700237.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
U0317]
gi|314937822|ref|ZP_07845139.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0133a04]
gi|314941632|ref|ZP_07848512.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0133C]
gi|314948879|ref|ZP_07852248.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0082]
gi|314951003|ref|ZP_07854070.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0133A]
gi|314993004|ref|ZP_07858400.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0133B]
gi|314996451|ref|ZP_07861494.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0133a01]
gi|389868786|ref|YP_006376209.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
faecium DO]
gi|424792359|ref|ZP_18218596.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
V689]
gi|424802717|ref|ZP_18228191.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
S447]
gi|424825925|ref|ZP_18250876.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R501]
gi|424852834|ref|ZP_18277219.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R499]
gi|424869056|ref|ZP_18292779.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R497]
gi|424938829|ref|ZP_18354593.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R496]
gi|424953589|ref|ZP_18368541.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R494]
gi|424958939|ref|ZP_18373554.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R446]
gi|424959216|ref|ZP_18373816.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1986]
gi|424965994|ref|ZP_18379866.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1190]
gi|424968735|ref|ZP_18382338.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1140]
gi|424971913|ref|ZP_18385311.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1139]
gi|424973229|ref|ZP_18386518.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1137]
gi|424978346|ref|ZP_18391278.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1123]
gi|424980424|ref|ZP_18393219.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV99]
gi|424985466|ref|ZP_18397940.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV69]
gi|424986780|ref|ZP_18399184.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV38]
gi|424989831|ref|ZP_18402083.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV26]
gi|424995108|ref|ZP_18407006.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV168]
gi|424998662|ref|ZP_18410333.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV165]
gi|425002335|ref|ZP_18413770.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV161]
gi|425005969|ref|ZP_18417166.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV102]
gi|425006523|ref|ZP_18417695.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV1]
gi|425010583|ref|ZP_18421523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E422]
gi|425015110|ref|ZP_18425751.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E417]
gi|425016864|ref|ZP_18427405.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
C621]
gi|425020530|ref|ZP_18430833.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
C497]
gi|425027872|ref|ZP_18435124.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
C1904]
gi|425030772|ref|ZP_18435933.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
515]
gi|425037137|ref|ZP_18441823.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
514]
gi|425038414|ref|ZP_18443030.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
513]
gi|425043380|ref|ZP_18447621.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
511]
gi|425044439|ref|ZP_18448600.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
510]
gi|425048848|ref|ZP_18452730.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
509]
gi|425051872|ref|ZP_18455512.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
506]
gi|425060283|ref|ZP_18463580.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
503]
gi|430830738|ref|ZP_19448794.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0333]
gi|430844004|ref|ZP_19461902.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1050]
gi|430846005|ref|ZP_19463870.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1133]
gi|430854850|ref|ZP_19472562.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1392]
gi|431541936|ref|ZP_19518165.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1731]
gi|431750083|ref|ZP_19538810.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2297]
gi|431754852|ref|ZP_19543512.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2883]
gi|431767227|ref|ZP_19555682.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1321]
gi|431770852|ref|ZP_19559248.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1644]
gi|431772307|ref|ZP_19560648.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2369]
gi|431775750|ref|ZP_19564020.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2560]
gi|431778818|ref|ZP_19567024.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E4389]
gi|68195059|gb|EAN09521.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium DO]
gi|257812685|gb|EEV41443.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,230,933]
gi|257818534|gb|EEV45862.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,231,502]
gi|257825706|gb|EEV52332.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,231,410]
gi|257830737|gb|EEV57344.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,231,408]
gi|260073879|gb|EEW62203.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium C68]
gi|260078358|gb|EEW66063.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium TC 6]
gi|289162338|gb|EFD10197.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
D344SRF]
gi|291599359|gb|EFF30384.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
U0317]
gi|291606082|gb|EFF35508.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1162]
gi|313589433|gb|EFR68278.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0133a01]
gi|313592527|gb|EFR71372.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0133B]
gi|313596858|gb|EFR75703.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0133A]
gi|313599523|gb|EFR78366.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0133C]
gi|313642853|gb|EFS07433.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0133a04]
gi|313644669|gb|EFS09249.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0082]
gi|388534035|gb|AFK59227.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
faecium DO]
gi|402917722|gb|EJX38472.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
V689]
gi|402919332|gb|EJX39941.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
S447]
gi|402924918|gb|EJX45101.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R501]
gi|402933029|gb|EJX52489.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R499]
gi|402936041|gb|EJX55240.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R496]
gi|402936111|gb|EJX55309.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R497]
gi|402938345|gb|EJX57360.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R446]
gi|402938710|gb|EJX57695.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R494]
gi|402942074|gb|EJX60708.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1190]
gi|402950836|gb|EJX68810.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1140]
gi|402951086|gb|EJX69038.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1986]
gi|402957038|gb|EJX74455.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1139]
gi|402959074|gb|EJX76352.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1137]
gi|402962108|gb|EJX79078.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1123]
gi|402965901|gb|EJX82582.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV69]
gi|402966541|gb|EJX83165.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV99]
gi|402975775|gb|EJX91708.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV38]
gi|402978158|gb|EJX93920.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV168]
gi|402981022|gb|EJX96578.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV26]
gi|402982361|gb|EJX97831.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV165]
gi|402983674|gb|EJX99053.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV161]
gi|402984488|gb|EJX99796.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV102]
gi|402996777|gb|EJY11141.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E417]
gi|402997055|gb|EJY11405.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV1]
gi|402999299|gb|EJY13496.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E422]
gi|403005116|gb|EJY18864.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
C1904]
gi|403005942|gb|EJY19619.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
C621]
gi|403009109|gb|EJY22577.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
C497]
gi|403012041|gb|EJY25309.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
514]
gi|403017002|gb|EJY29783.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
515]
gi|403019519|gb|EJY32115.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
513]
gi|403020106|gb|EJY32665.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
511]
gi|403029666|gb|EJY41409.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
509]
gi|403029899|gb|EJY41623.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
510]
gi|403036432|gb|EJY47781.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
506]
gi|403042789|gb|EJY53732.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
503]
gi|430482327|gb|ELA59445.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0333]
gi|430496594|gb|ELA72653.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1050]
gi|430539825|gb|ELA80064.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1133]
gi|430547729|gb|ELA87645.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1392]
gi|430592983|gb|ELB30970.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1731]
gi|430610556|gb|ELB47700.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2297]
gi|430618680|gb|ELB55521.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2883]
gi|430631235|gb|ELB67558.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1321]
gi|430634501|gb|ELB70620.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1644]
gi|430637995|gb|ELB73976.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2369]
gi|430642398|gb|ELB78176.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2560]
gi|430643479|gb|ELB79218.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E4389]
Length = 457
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 109/409 (26%), Positives = 165/409 (40%), Gaps = 83/409 (20%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLK-VKS---ARDVVTPLAHMSYSVQL 316
E+A+PGE E G++ G G E + V++ R + PLAH+ Y QL
Sbjct: 38 ENALPGEEVEILVVKAGNKFGYGKVETFITQSPDRQPVENNALLRIGIAPLAHLKYEQQL 97
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K+ + ++ K I K E+ LP +G GYRNK
Sbjct: 98 VFKQKQVEHVMAK------------------IAKMPEVPVLPT-----VGMAEPFGYRNK 134
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + V + + P + + A K + ++ LQ+ +
Sbjct: 135 AQIPVR-RIDGQLATGFYKKNSHDLVPIEDFYIQDPVIDQ-AIK---VVRDILQRFQVRG 189
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
+N KN G R + +R G + S M++ V+
Sbjct: 190 YNEEKNEGQLRHIIIRRG-------------------HYSHEMMVVLVT----------- 219
Query: 497 EFERLAKAFAAG--ATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLLSIPKADGEPEE 553
R K F + A A LP VIQ+ ++ +NV D L
Sbjct: 220 ---RKEKFFKSKEIAEAIHEELPEVVSVIQNINEEKTNVILGDKEKVLYG---------- 266
Query: 554 SNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTG 613
D +E D + + IS +F+QVNT AE LY ++A+L ++ D G G
Sbjct: 267 -RDYIE----DQLLGKTYRISAKSFYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIG 321
Query: 614 TIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
TIGL+LA RV V G+E+ A+ DA NA N I+N + KAE VM
Sbjct: 322 TIGLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENVHYEVGKAEKVM 370
>gi|229916717|ref|YP_002885363.1| RNA methyltransferase, TrmA family [Exiguobacterium sp. AT1b]
gi|229468146|gb|ACQ69918.1| RNA methyltransferase, TrmA family [Exiguobacterium sp. AT1b]
Length = 454
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 94/366 (25%), Positives = 139/366 (37%), Gaps = 74/366 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H SY QL K+ + LK+L G + +G
Sbjct: 85 LQHFSYEGQLRQKRERVVDALKRL------------------------GQFDVPVHDTIG 120
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
P YRNK + V + + V G +R + E +C E K + +
Sbjct: 121 MPEPWRYRNKAQ--VPFKQEGDRLVS---GFYRPRSHDIVEMSECLIQDERNDKAIQVVR 175
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
+ L +P ++ G R + R G G+ + ++LI + +
Sbjct: 176 DVLDARGVPAYDEKTGRGVIRHVMARYGYHSGELM----------------IVLITKTTK 219
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
+ +V ERL P ++Q NV P + L + K
Sbjct: 220 LKGVNEIVADIVERL---------------PDVTSIMQ------NVNPDKTNVILGATNK 258
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
E I D I+ L F ISP +FFQVN + EKLY ++A L +
Sbjct: 259 LLYGHET--------IEDKIAGLTFTISPHSFFQVNPVQTEKLYGKALEYAQLSGTEQVV 310
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
D CG GTI L LA + V G+E+ A+ DA +NA +N I N + C AEDV+
Sbjct: 311 DAYCGIGTISLFLARKAAHVYGVEVVPEAIEDAKQNALVNEIDNVTYACGAAEDVLPQWK 370
Query: 667 KDYLNP 672
KD +NP
Sbjct: 371 KDGVNP 376
>gi|383328968|ref|YP_005354852.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus faecium
Aus0004]
gi|378938662|gb|AFC63734.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus faecium
Aus0004]
Length = 458
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 109/409 (26%), Positives = 165/409 (40%), Gaps = 83/409 (20%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLK-VKS---ARDVVTPLAHMSYSVQL 316
E+A+PGE E G++ G G E + V++ R + PLAH+ Y QL
Sbjct: 38 ENALPGEEVEILVVKAGNKFGYGKVETFITQSPDRQPVENNALLRIGIAPLAHLKYEQQL 97
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K+ + ++ K I K E+ LP +G GYRNK
Sbjct: 98 VFKQKQVEHVMAK------------------IAKMPEVPVLPT-----VGMAEPFGYRNK 134
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + V + + P + + A K + ++ LQ+ +
Sbjct: 135 AQIPVR-RIDGQLATGFYKKNSHDLVPIEDFYIQDPVIDQ-AIK---VVRDILQRFQVRG 189
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
+N KN G R + +R G + S M++ V+
Sbjct: 190 YNEEKNEGQLRHIIIRRG-------------------HYSHEMMVVLVT----------- 219
Query: 497 EFERLAKAFAAG--ATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLLSIPKADGEPEE 553
R K F + A A LP VIQ+ ++ +NV D L
Sbjct: 220 ---RKEKFFKSKEIAEAIHEELPEVVSVIQNINEEKTNVILGDKEKVLYG---------- 266
Query: 554 SNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTG 613
D +E D + + IS +F+QVNT AE LY ++A+L ++ D G G
Sbjct: 267 -RDYIE----DQLLGKTYRISAKSFYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIG 321
Query: 614 TIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
TIGL+LA RV V G+E+ A+ DA NA N I+N + KAE VM
Sbjct: 322 TIGLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENVHYEVGKAEKVM 370
>gi|386317313|ref|YP_006013477.1| tRNA (uracil-5-)-methyltransferase [Streptococcus dysgalactiae
subsp. equisimilis ATCC 12394]
gi|323127600|gb|ADX24897.1| tRNA (uracil-5-)-methyltransferase [Streptococcus dysgalactiae
subsp. equisimilis ATCC 12394]
Length = 543
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 102/417 (24%), Positives = 168/417 (40%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLA----GDGSGLKVKSARDVVTPLAHMSYSVQL 316
++A+PGE+ + G G E + V R + H++Y QL
Sbjct: 33 DNALPGEIIDMRVLKVNKNSGFGKVEAYQKLSPARNQAIDVTYLRTGIADFGHLAYEDQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K+ + L K+ A N V++ ++ IG + +PL YRNK
Sbjct: 93 RFKQKQVQDNLYKI------AGINDVTV------NQTIG---------MDNPL--AYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF + + V + + + + + +E L++ D+
Sbjct: 130 AQVPVR-RVNGQLETGFFRKHSHDLVPISDYYIQDKEIDRLI----NFTRELLRRFDVKP 184
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS-ATFDDAVVN 495
++ + +G R + VR G G E+ML+ + F V+
Sbjct: 185 YDEKEQTGLIRHIVVRRGHYSG------------------EMMLVLVTTRPKVFR---VD 223
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
++ +AF P +IQ N+ + +I D +
Sbjct: 224 QVISKIVEAF-----------PAVVSIIQ------NINDKNTN----AIFGKDFKTLYGK 262
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
D I DS+ F IS +F+QVNT+ AEKLY ++DL D ++ D G GTI
Sbjct: 263 DT----ITDSMLGNDFAISAQSFYQVNTVMAEKLYQTAIAFSDLSEDDVVIDAYSGIGTI 318
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL+ A V V G+E+ +AV DA +NA NGI N FV AE+ M + K+ + P
Sbjct: 319 GLSFAKTVKAVYGVEVIEAAVKDAQQNAARNGITNVHFVADTAENAMATWAKEGIKP 375
>gi|319946766|ref|ZP_08021000.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus australis
ATCC 700641]
gi|417920007|ref|ZP_12563527.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
australis ATCC 700641]
gi|319746814|gb|EFV99073.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus australis
ATCC 700641]
gi|342831296|gb|EGU65614.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
australis ATCC 700641]
Length = 452
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 106/416 (25%), Positives = 166/416 (39%), Gaps = 77/416 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDG----SGLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGE+ + G G E L + R + L H++Y+ QL
Sbjct: 33 ENALPGEVIRMLVLKVNKKIGYGKVEEYLEKSPYRNEELDLAYLRTGIADLGHLAYTEQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K + L K+ G+S E +P L + P+ YRNK
Sbjct: 93 KFKAKQVKDSLYKMA---------GISDME----------VPLTLG--MDHPV--QYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + + + + P + ++ + + F DL
Sbjct: 130 AQVPVR-RVNGQVETGFFRKNSHDLMPIEDFYIQDPVIDQVVLALRDLIRRF----DLKP 184
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
++ + SG R L VR G G E+M+I + V+
Sbjct: 185 YDEKEQSGLIRNLVVRRGHHSG------------------EIMVILVTTRPKI--FRVDQ 224
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESND 556
E+L K F P+ V+Q+ + A R L G+
Sbjct: 225 LIEQLIKQF-----------PVIKSVMQNINDQNTNAIFGKEWRTLY-----GQD----- 263
Query: 557 VVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIG 616
I D + F IS AF+QVNT AEKLY D+ADL + ++ D G GTIG
Sbjct: 264 ----YITDQMLGNDFQISGPAFYQVNTEMAEKLYQTAIDFADLKEEDVVIDAYSGIGTIG 319
Query: 617 LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
L++A V V G+E+ AV ++ +NA +N I N +VC AE+ M + LK+ + P
Sbjct: 320 LSVAKHVKEVYGVEVIPEAVENSQKNAALNNITNAHYVCDTAENAMKNWLKEGIQP 375
>gi|304316338|ref|YP_003851483.1| TrmA family RNA methyltransferase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302777840|gb|ADL68399.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 450
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 127/295 (43%), Gaps = 52/295 (17%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKPTVGFML-GNFREGVTAVEEPVDCPNVSEIACKY 421
GI+ SP YRNK E++ G +G + G F + VT DC V
Sbjct: 114 GIVRSPDAFLYRNKMEYTFGKDDNGISQLGLHVKGRFYDIVTTE----DCRIVDSDFITC 169
Query: 422 ASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLI 481
++++ LP +N + G+ R L VR+ + G EV I+ V S++
Sbjct: 170 LKNVLRYVEEHGLPHYNIKTHEGYLRHLVVRKAANTG--------EVIINVVTTSQI--- 218
Query: 482 AQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRL 541
+F +L S+ L +I L
Sbjct: 219 -------------KHDFSKLVDELR--------SIKLNGKLI-------------GILHT 244
Query: 542 LSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
++ +D E V+ R I D I L+F IS +FFQ N+ AEKLYS+ ++A
Sbjct: 245 VNDSYSDAVKCEKLTVLYGRDYIMDEILGLKFKISAFSFFQTNSKGAEKLYSIAREFAGE 304
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
+ +LFD+ CGTGTIG+ +A VIG+E+ AV A NA +NG+ N +F+
Sbjct: 305 ISNKILFDLYCGTGTIGIIMAPLAKKVIGVELVEEAVDAARENARLNGLSNIQFI 359
>gi|148543331|ref|YP_001270701.1| RNA methyltransferase [Lactobacillus reuteri DSM 20016]
gi|184152739|ref|YP_001841080.1| RNA methyltransferase [Lactobacillus reuteri JCM 1112]
gi|227364399|ref|ZP_03848491.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri MM2-3]
gi|325683598|ref|ZP_08163114.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri
MM4-1A]
gi|148530365|gb|ABQ82364.1| 23S rRNA m(5)U-1939 methyltransferase [Lactobacillus reuteri DSM
20016]
gi|183224083|dbj|BAG24600.1| RNA methyltransferase [Lactobacillus reuteri JCM 1112]
gi|227070585|gb|EEI08916.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri MM2-3]
gi|324977948|gb|EGC14899.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri
MM4-1A]
Length = 468
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 107/390 (27%), Positives = 150/390 (38%), Gaps = 91/390 (23%)
Query: 298 KSARDVVTP------------LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLP 345
K +RD VTP L +++Y QL+ K+ I L+K P G
Sbjct: 73 KKSRDRVTPRDEYADIAGGFELENLAYQQQLKFKRQVIIDSLEKFQ-------PYG---- 121
Query: 346 EWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAV 405
R P + +P GYRNK +F V + K G N V
Sbjct: 122 -----YRNYDVRPT-----IAAPEEYGYRNKAQFQVR-MVNGKVAAGLYQPNSHTLVDME 170
Query: 406 EEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVEN 465
V P E + ++ +PV++ NSG + L VRE S G
Sbjct: 171 TCAVQMPRTMETVRAVTKMIEDL----QIPVYDEKHNSGIVKTLAVRESWSTG------- 219
Query: 466 LEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQD 525
EV L +SA ER+ K LP V+Q
Sbjct: 220 -----------EVQLTFITNSAKLPHK--RELLERIEK-----------ELPAVVSVMQ- 254
Query: 526 HQGVSNVAPADAPL----RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQV 581
NV P D PL +++ + D I +S+ L F +S +F Q+
Sbjct: 255 -----NVNPGDTPLVWGDKMIHLAGKDS------------ILESLMGLDFKLSARSFLQL 297
Query: 582 NTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHR 641
N E LY +L D L D G GTIGL+LA RV V G+E+ AV+DA+
Sbjct: 298 NPEQTEVLYEEASKALELDQDDTLIDAYAGIGTIGLSLASRVKAVRGMEIIPEAVADANE 357
Query: 642 NAEINGIKNCRFVCAKAEDVMGSLLKDYLN 671
NA++N I N ++ KAE+V+ K+ LN
Sbjct: 358 NAKLNNITNAKYEVGKAEEVLPRWQKEGLN 387
>gi|346308777|ref|ZP_08850882.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dorea formicigenerans
4_6_53AFAA]
gi|345901856|gb|EGX71652.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dorea formicigenerans
4_6_53AFAA]
Length = 461
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 86/310 (27%), Positives = 134/310 (43%), Gaps = 51/310 (16%)
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFM--LGNFREGVTAVEEPVDCPNVSEIAC 419
EG+L SP + YRNK EFS G + P M G+F + V DC V
Sbjct: 115 EGVLESPFKSEYRNKMEFSFGDEYKDGPLALGMHKRGSFHDIVNVC----DCQIVDSDYR 170
Query: 420 KYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVM 479
K + E ++S LP ++R ++ G++R L VR+ V E++
Sbjct: 171 KILACTLECARKSGLPYYHRMRHDGYFRHLLVRKA------------------VKTEEIL 212
Query: 480 LIAQVSSATFDDAVVNSE--FERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADA 537
+ D V SE F+ K F A+ +L LT ++
Sbjct: 213 I----------DIVTASEEGFDSKPKEFLDKWAAALQALELTGKIV-------------G 249
Query: 538 PLRLLSIPKADGEPEESNDVV--EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGD 595
L + AD +E +V+ + ++ + L+F I+P +FFQ N+L AE LY +
Sbjct: 250 ILHTKNDSLADIVKDEGTEVLFGQDYFYEELLGLKFKITPFSFFQTNSLGAEVLYEKARE 309
Query: 596 WADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVC 655
+ + ++FD+ GTGTI LA V+G+E+ AV A NA++N + NC F
Sbjct: 310 YIGDTNEKVVFDLYSGTGTIAQILAPVARKVVGVEIVEEAVEAAKVNAKLNELDNCTFWA 369
Query: 656 AKAEDVMGSL 665
V+ L
Sbjct: 370 GDVLKVIDEL 379
>gi|322517118|ref|ZP_08070002.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus vestibularis
ATCC 49124]
gi|322124268|gb|EFX95779.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus vestibularis
ATCC 49124]
Length = 452
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 99/417 (23%), Positives = 163/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLA----GDGSGLKVKSARDVVTPLAHMSYSVQL 316
++A+PGE+ + G G E + R + HM+Y QL
Sbjct: 33 DNALPGEVIKMRVLKLKKNIGFGKVEEYMTLSPNRNQDIDATYLRSGIADFGHMTYEEQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K+ + L K G+S ++ LG YRNK
Sbjct: 93 KFKRKQVVDNLYKTA---------GIS--------------DVEVAETLGMDTPYAYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF-QEFLQQSDLP 435
+ V ++ + GF N + + P++ + + +F ++ L++ DL
Sbjct: 130 AQVPVR-RVKGQLETGFYRKNSHDLI-----PIEDFLIQDKEIDKLIVFVRDLLRRYDLK 183
Query: 436 VWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVN 495
++ + +G R L VR G G+ + ++ F ++
Sbjct: 184 PYDEKEQTGLIRHLVVRRGHYSGQMM-----------------LVFVTTRPKVFR---ID 223
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
++ +AF P +IQ+ + A R L G+
Sbjct: 224 QIIAKITEAF-----------PSVVSIIQNINDKNTNAIFGKEFRTLY-----GQDT--- 264
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
I DS+ + IS +F+QVNT AEKLY D++DL D+++ D G GTI
Sbjct: 265 ------ITDSMLGNDYEISAQSFYQVNTEMAEKLYQTAIDFSDLNSDSIVIDAYSGIGTI 318
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL+ A +V V G+E+ +AV DA +NAE NGI N +V AE+ M KD + P
Sbjct: 319 GLSFAKQVKEVYGVEVIETAVEDAKKNAECNGITNAHYVADSAENAMAKWSKDGIKP 375
>gi|116334207|ref|YP_795734.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
brevis ATCC 367]
gi|116099554|gb|ABJ64703.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
brevis ATCC 367]
Length = 457
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 92/363 (25%), Positives = 144/363 (39%), Gaps = 81/363 (22%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ PL H++Y QL+ K++ IA++ K ++ A G+ P
Sbjct: 85 IAPLQHLAYPAQLKFKQHQIAELFSKSHQDVEVAPTMGMDNP------------------ 126
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
YRNK + V ++ + GF + E + + + P + K
Sbjct: 127 -------TQYRNKAQVPVR-MIKGQLETGFYRQHSHELIPLTDFYIQDPAIDAAIIK--- 175
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNI--SEVMLI 481
++ L+Q ++P +N + G R + VR G E + V IS S+ L+
Sbjct: 176 -VRDLLRQFEIPAYNEVSDKGVIRNIMVRRGYYSH-----EMMIVLISRTQKIPSQAQLV 229
Query: 482 AQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLP-LTALVIQDHQGVSNVAPADAPLR 540
Q+ A LP +T++V+ + +NV + R
Sbjct: 230 DQIHQA----------------------------LPEVTSIVLNVNAKKTNVIMGNV-TR 260
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
+L G+P I D++ L F IS +F+QVN EKLY + D A L
Sbjct: 261 VLY-----GKPT---------IEDTLMGLTFAISARSFYQVNPQQTEKLYQMAIDKAGLT 306
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
+ D CG GTI L LA V G+E+ A+ DA NA+ N + N F KAED
Sbjct: 307 GAETVIDAYCGIGTISLALAKHAKQVYGVEIVPEAIEDAKVNAQKNHLSNVTFAVNKAED 366
Query: 661 VMG 663
M
Sbjct: 367 QMA 369
>gi|387879386|ref|YP_006309689.1| RNA methyltransferase, TrmA family protein [Streptococcus
parasanguinis FW213]
gi|386792840|gb|AFJ25875.1| RNA methyltransferase, TrmA family protein [Streptococcus
parasanguinis FW213]
Length = 455
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 107/417 (25%), Positives = 166/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDG----SGLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGE+ + G G E L + R + L H++Y QL
Sbjct: 36 ENALPGEVIRMRVLKVNKKIGYGKVEEYLEKSPHRNEELDLAYLRSGIADLGHLAYPEQL 95
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K + L K+ G+S E +P L + P+ YRNK
Sbjct: 96 KFKAKQVKDSLYKMA---------GISDIE----------VPLTLG--MDHPV--QYRNK 132
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + + + + P + ++ + + F DL
Sbjct: 133 AQVPVR-RVNGQVETGFFRKNSHDLMPIEDFYIQDPVIDQVVLALRDLIRRF----DLKP 187
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS-ATFDDAVVN 495
++ + SG R L VR G G E+M+I + F V+
Sbjct: 188 YDEKEQSGLIRNLVVRRGHHSG------------------EIMVILVTTRPKVFR---VD 226
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
E+L K F P V+Q+ + A R L G+
Sbjct: 227 QLIEQLIKQF-----------PAIKSVMQNINDQNTNAIFGKEWRTLY-----GQD---- 266
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
I D + F IS AF+QVNT AEKLY D+A+L + ++ D G GTI
Sbjct: 267 -----YITDQMLGNSFQISGPAFYQVNTEMAEKLYQTAIDFAELKEEDVVIDAYSGIGTI 321
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL++A V V G+E+ AV ++ +NA +NGI N +VC AE+ M + LK+ + P
Sbjct: 322 GLSVAKHVKEVYGVEVIPEAVKNSQKNASLNGITNAHYVCDTAENAMKNWLKEGIQP 378
>gi|301619777|ref|XP_002939250.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog [Xenopus
(Silurana) tropicalis]
Length = 384
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 66/101 (65%)
Query: 566 ISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGM 625
+ +LR +SPT+F QVNT AAE LY+ G+ L D+CCGTG IGL+LA
Sbjct: 189 VLDLRLRVSPTSFLQVNTPAAETLYTALGNMIQRHAHGTLLDLCCGTGAIGLSLAGYFKN 248
Query: 626 VIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
VIG+EM AV DA NA+ NGI+NC+F+ +AE ++ +LL
Sbjct: 249 VIGVEMVEDAVLDARWNADFNGIENCQFLSGRAEKLLPNLL 289
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 53/119 (44%), Gaps = 12/119 (10%)
Query: 338 CPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLG 396
C + V+ P W M +E +LE P++NGYRNK FSV P TVG +G
Sbjct: 64 CLSDVATPLWRMGYKE------QLE-----PVMNGYRNKSSFSVNRGPDGDPKTVGNFVG 112
Query: 397 NFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGR 455
R+ N+ E A +++F+ QS L F + G WR + VR +
Sbjct: 113 TGRDRNIVCVRADHLINIPEKHKHVARCYEDFIHQSPLAPCLLFYDGGHWRDVVVRTNK 171
>gi|291460187|ref|ZP_06599577.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Oribacterium sp. oral
taxon 078 str. F0262]
gi|291417134|gb|EFE90853.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Oribacterium sp. oral
taxon 078 str. F0262]
Length = 602
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 141/335 (42%), Gaps = 44/335 (13%)
Query: 349 MKSREIGGLPCKLEGI-------LGSPLVN-----GYRNKCEFSVGYSLQAKPTVGFMLG 396
K+R++ C++ G+ + P+V YRNK ++ + +P+ GF G
Sbjct: 109 FKTRKLFTDLCRIGGVEEAFLREISDPIVGMENPLRYRNKAQYPIARDRMGRPSAGFYAG 168
Query: 397 NFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRS 456
+ DC +E SI ++++ D+P ++ G R +R+G
Sbjct: 169 RSHRLIPCE----DCLIGAEENRDILSILLRWMERFDIPPYDEGSGKGLIRHALIRKGYY 224
Query: 457 PGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAF-AAG------- 508
G+ + L +N + E +L +++ A D SE E F +AG
Sbjct: 225 SGEWMLC--LVINGRSLPHWESLL-SELKGAEAPDPE-GSEGESFGAEFPSAGKEEGREN 280
Query: 509 -ATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSIS 567
+ + L + H G NV + L I D I
Sbjct: 281 RGKRTRSKIRLRSFSFSIHTGRDNVIMGREIVNLYG---------------PGFIEDRIQ 325
Query: 568 NLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVI 627
+RF ISP +F+QVN + E++Y +++ L +FD+ CG GTI L L+ G V
Sbjct: 326 GIRFRISPLSFYQVNPVQTERIYETVLEFSALSGTENVFDLYCGIGTISLLLSAAAGRVY 385
Query: 628 GIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
GIE+ AV DA NAE NGI+N F AE+++
Sbjct: 386 GIEIIPDAVRDARENAERNGIENAYFFTGAAEELL 420
>gi|257898994|ref|ZP_05678647.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
Com15]
gi|257836906|gb|EEV61980.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
Com15]
Length = 460
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 95/367 (25%), Positives = 146/367 (39%), Gaps = 71/367 (19%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H++Y QL+ KK+ + Q L+K P G R LP +G
Sbjct: 87 LQHLAYQAQLDFKKDLLLQALEKFK-------PAGF---------RSYQLLPT-----IG 125
Query: 367 SPLVNGYRNKCEFSVGYSLQA-KPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF 425
YRNK +F + + Q K G N + V + V P ++ +
Sbjct: 126 MDDPWHYRNKAQFQLRKNKQTQKAEAGLYEANSHQLVPITDCLVQEPRTQKVMNTVVQLL 185
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
+F D P+++ NSG +R + VR G G+ +V+ I +
Sbjct: 186 NKF----DAPIYDERTNSGIFRTIMVRVGVKTGE----------------LQVVFITRSK 225
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
+A++ ERL + + + T+LV+ D +V +A
Sbjct: 226 KFPQKNAMIREINERLPEVVSIMQNVQAQK---TSLVMGDE--TIHVWGKEA-------- 272
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
I + I+ + F +SP AFFQ+N E LY G D PD +
Sbjct: 273 ----------------IEEQINEVTFDLSPRAFFQLNPQQTELLYGEGIKALDAQPDETI 316
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
D CG GTIGL++A +V V G++ A++DA RNAE G N R+ AE V+
Sbjct: 317 VDAYCGVGTIGLSVAKKVKEVRGMDTVPQAIADAKRNAERLGYHNTRYEVGTAEQVLPKW 376
Query: 666 LKDYLNP 672
L + P
Sbjct: 377 LNEGFQP 383
>gi|227530251|ref|ZP_03960300.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
vaginalis ATCC 49540]
gi|227349840|gb|EEJ40131.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
vaginalis ATCC 49540]
Length = 458
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 93/371 (25%), Positives = 146/371 (39%), Gaps = 78/371 (21%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ PL H+ Y QL+ K++ IA++L K + EI LP
Sbjct: 85 IAPLGHLKYEAQLKFKQHQIAELLAKAHLD-------------------EIEVLPT---- 121
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
+G YRNK + V ++ + GF V + + P + ++
Sbjct: 122 -MGMDKPYHYRNKAQVPVK-MVRGQLETGFYKRGSHTLVPIEDFYIQDPAIDQVII---- 175
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
+ ++ L++ + ++ G R + VR G EVM++
Sbjct: 176 VVRDLLRKYHVTPYDERTGKGVIRTVMVRRGYYS------------------HEVMVVL- 216
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLS 543
V N++ +A+ G A P + I D + +N RLL
Sbjct: 217 ---------VTNTKRLPMAEQIVDGIVAVVPEVKSIVQNINDKK--TN--------RLLG 257
Query: 544 IPKADGEPEESNDVVEA--RIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGP 601
+ N + IHD + + F ISP +F+QVN E+LY D A L
Sbjct: 258 ---------DKNKTLWGADEIHDQLLGIDFAISPLSFYQVNPQQTERLYQTAIDNAGLDG 308
Query: 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661
+ D CG GTI L +A V G+E+ +A+ DA NA+ NGIKN +FV KAE+
Sbjct: 309 SQTVIDAYCGIGTISLAVAKHAKQVYGVEIVPAAIDDAKHNAKRNGIKNAKFVVGKAEEQ 368
Query: 662 MGSLLKDYLNP 672
+D L P
Sbjct: 369 FAKWQEDGLKP 379
>gi|406580657|ref|ZP_11055848.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus sp. GMD4E]
gi|406582964|ref|ZP_11058059.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus sp. GMD3E]
gi|406585308|ref|ZP_11060300.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus sp. GMD2E]
gi|410937234|ref|ZP_11369095.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus sp.
GMD5E]
gi|427396214|ref|ZP_18888973.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus durans
FB129-CNAB-4]
gi|430860238|ref|ZP_19477842.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1573]
gi|431005431|ref|ZP_19489077.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1578]
gi|431229818|ref|ZP_19502021.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1622]
gi|431252345|ref|ZP_19504403.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1623]
gi|431293405|ref|ZP_19506873.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1626]
gi|431658083|ref|ZP_19523883.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1904]
gi|447912538|ref|YP_007393950.1| RNA methyltransferase, TrmA family [Enterococcus faecium NRRL
B-2354]
gi|404453640|gb|EKA00685.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus sp. GMD4E]
gi|404457370|gb|EKA03914.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus sp. GMD3E]
gi|404462824|gb|EKA08531.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus sp. GMD2E]
gi|410734345|gb|EKQ76265.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus sp.
GMD5E]
gi|425722884|gb|EKU85775.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus durans
FB129-CNAB-4]
gi|430552675|gb|ELA92403.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1573]
gi|430561464|gb|ELB00732.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1578]
gi|430573804|gb|ELB12582.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1622]
gi|430578771|gb|ELB17323.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1623]
gi|430582042|gb|ELB20477.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1626]
gi|430600443|gb|ELB38088.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1904]
gi|445188247|gb|AGE29889.1| RNA methyltransferase, TrmA family [Enterococcus faecium NRRL
B-2354]
Length = 457
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 108/409 (26%), Positives = 165/409 (40%), Gaps = 83/409 (20%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLK-VKS---ARDVVTPLAHMSYSVQL 316
E+A+PGE E G++ G G E + V++ R + PLAH+ Y QL
Sbjct: 38 ENALPGEEVEILVVKAGNKFGYGKVETFITQSPDRQPVENNALLRTGIAPLAHLKYEQQL 97
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K+ + ++ K I K E+ LP +G GYRNK
Sbjct: 98 VFKQKQVEHVMAK------------------IAKMPEVPVLPT-----VGMAEPFGYRNK 134
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + V + + P + + A K + ++ LQ+ +
Sbjct: 135 AQIPVR-RIDGQLATGFYKKNSHDLVPIEDFYIQDPVIDQ-AIK---VVRDILQRFQVRG 189
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
+N KN G R + +R G + S M++ V+
Sbjct: 190 YNEEKNEGQLRHIIIRRG-------------------HYSHEMMVVLVT----------- 219
Query: 497 EFERLAKAFAAG--ATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLLSIPKADGEPEE 553
R K F + A A LP VIQ+ ++ +NV D L
Sbjct: 220 ---RKEKFFKSKEIAEAIHEELPEVVSVIQNINEEKTNVILGDKEKVLYG---------- 266
Query: 554 SNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTG 613
D +E D + + IS +F+QVNT AE LY ++A+L ++ D G G
Sbjct: 267 -RDYIE----DQLLGKTYRISAKSFYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIG 321
Query: 614 TIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
TIGL+LA RV V G+E+ A+ DA N+ N I+N + KAE VM
Sbjct: 322 TIGLSLADRVDKVYGMEVIPEAIEDAQFNSLNNKIENVHYEVGKAEKVM 370
>gi|335429661|ref|ZP_08556559.1| RNA methyltransferase, TrmA family protein [Haloplasma contractile
SSD-17B]
gi|334889671|gb|EGM27956.1| RNA methyltransferase, TrmA family protein [Haloplasma contractile
SSD-17B]
Length = 454
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 90/359 (25%), Positives = 146/359 (40%), Gaps = 73/359 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H+SY QL+ K+ + ++K + ++ V++ + I
Sbjct: 86 LMHVSYEGQLKEKQRYVLDVMKTIAKH-------NVTVDDII------------------ 120
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
P+ + YR + + V +S K + + G + E V + C +IA F+
Sbjct: 121 -PMKDPYRYRNKIQVAFSSNKKGDI--VAGFYEENTHKVVQMETCHIQDKIADAIVGSFK 177
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
E ++Q + ++ K G R + +R G + + M++ SS
Sbjct: 178 EIMKQYKIRPYDEDKRVGLIRHILIRRG------------------FHTDQTMVVIVTSS 219
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
F + KA P +IQ N P + L
Sbjct: 220 NKFPGR------NNVVKALRNKH-------PEIDTIIQ------NTNPRKTSIVL----- 255
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
GE +E + I D + ++F ISP +F+QVN + E LY+ D A+L + +
Sbjct: 256 --GE-QERVLFGKGYIVDVLCGMKFKISPKSFYQVNPVQTETLYNKAIDLANLKGNERVL 312
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
D CG GTIGL + + G VIG+E+N A+ DA NA+IN +KN RF A A M L
Sbjct: 313 DAYCGIGTIGLIASRKAGNVIGVEVNKDAIQDAIGNAKINNVKNVRFFTADASVFMVEL 371
>gi|95930707|ref|ZP_01313440.1| RNA methyltransferase, TrmA family [Desulfuromonas acetoxidans DSM
684]
gi|95133187|gb|EAT14853.1| RNA methyltransferase, TrmA family [Desulfuromonas acetoxidans DSM
684]
Length = 467
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 89/397 (22%), Positives = 161/397 (40%), Gaps = 107/397 (26%)
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL-EGILGSPLVN-GYR 374
E ++ I +++K L R+ ++ P CKL + G PL++ GYR
Sbjct: 59 EGQRRIIGKLIKVLRRSRQRVTPG------------------CKLAKNCSGCPLIHLGYR 100
Query: 375 NKCEFSVGY---SLQAKPTVGFM------------------------------LGNFREG 401
++ +F G +L PT+G + +G ++ G
Sbjct: 101 HQLDFKRGMIEDALSHYPTLGHVTVHAVWSSEETFGYRTIAKLAIAKVHGKARVGLYKRG 160
Query: 402 VTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPL 461
V + +CP + + A +E +++ D+ V+N G R + +R K L
Sbjct: 161 SHQVLDIGNCPQQHPLINQIAQALREEIEKQDIYVYNPVSRRGLLRYVAIRVSPQANKAL 220
Query: 462 DVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTAL 521
+ + +E N E+ +A+
Sbjct: 221 ----VTLVTTERNYREMTHLAKWLKKKVPQ------------------------------ 246
Query: 522 VIQDHQGVS----NVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTA 577
+I HQ ++ NV ++++ + D++ D + ++R +SPT+
Sbjct: 247 IIGVHQNINASTGNVIFGSTTVKVIG----------AGDLI-----DQVGDIRLRLSPTS 291
Query: 578 FFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVS 637
FFQVN A ++Y+ WADLGP D+ CG G I + LA V GIE+N A+
Sbjct: 292 FFQVNNRQAARIYAQVQSWADLGPKDTAVDLYCGVGGIAMHLATSGAKVTGIEINEDAIF 351
Query: 638 DAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLR 674
+A AE+N + NCRF+ A +++ + ++ L+PL+
Sbjct: 352 NAKAAAELNELGNCRFIVGDAGEILHDMQRE-LSPLK 387
>gi|294618092|ref|ZP_06697689.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1679]
gi|291595664|gb|EFF26960.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1679]
Length = 457
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 108/409 (26%), Positives = 165/409 (40%), Gaps = 83/409 (20%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLK-VKS---ARDVVTPLAHMSYSVQL 316
E+A+PGE E G++ G G E + V++ R + PLAH+ Y QL
Sbjct: 38 ENALPGEEVEILVVKAGNKFGYGKVETFITQSPDRQPVENNALLRTGIAPLAHLKYEQQL 97
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K+ + ++ K I K E+ LP +G GYRNK
Sbjct: 98 VFKQKQVEHVMAK------------------IAKMPEVPVLPT-----VGMAEPFGYRNK 134
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + V + + P + + A K + ++ LQ+ +
Sbjct: 135 AQIPVR-RIDGQLATGFYKKNSHDLVPIEDFYIQDPVIDQ-AIK---VVRDILQRFQVRG 189
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
+N KN G R + +R G + S M++ V+
Sbjct: 190 YNEEKNEGQLRHIIIRRG-------------------HYSHEMMVVLVT----------- 219
Query: 497 EFERLAKAFAAG--ATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLLSIPKADGEPEE 553
R K F + A A LP VIQ+ ++ +NV D L
Sbjct: 220 ---RKEKFFKSKEIAEAIHEELPEVVSVIQNINEEKTNVILGDKEKVLYG---------- 266
Query: 554 SNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTG 613
D +E D + + IS +F+QVNT AE LY ++A+L ++ D G G
Sbjct: 267 -RDYIE----DQLLGKTYRISAKSFYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIG 321
Query: 614 TIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
TIGL+LA RV V G+E+ A+ DA N+ N I+N + KAE VM
Sbjct: 322 TIGLSLADRVDKVYGMEVIPEAIEDAQFNSLNNKIENVHYEVGKAEKVM 370
>gi|226950293|ref|YP_002805384.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A2 str. Kyoto]
gi|226843642|gb|ACO86308.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A2 str. Kyoto]
Length = 450
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 133/318 (41%), Gaps = 53/318 (16%)
Query: 348 IMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVG-YSLQAKPTVGFMLGNFREGVTAVE 406
+ KS+EI G G+ SP YRNK EF+ G T+G + N + V+
Sbjct: 101 LFKSKEIKGFD--FLGVEKSPEEYEYRNKMEFTFGDMEKGGDLTLGMHVKNRNFSIVTVD 158
Query: 407 EPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENL 466
+ C V + + + LP + + GF R L +R+ ++ G+ L
Sbjct: 159 K---CEIVDRDFRNILTTVVNYFNEKRLPKYRVMSHEGFLRNLVIRKAKNTGEIL----- 210
Query: 467 EVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDH 526
+NI S FD + L K G + ++ +
Sbjct: 211 ------INI------VTTSQMEFD---FKEIVDMLLKVECKGE--------IKGILHTIN 247
Query: 527 QGVSNVAPADAPLRLLSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTL 584
+S+V D +++ R I + + L+F I+P AFFQ N+
Sbjct: 248 DTLSDVVQVDKL-----------------EILYGRDYIIEELLGLKFKIAPEAFFQTNSK 290
Query: 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAE 644
AEKLYS+ D+ ++ D+ CGTGTIG +A + VIG+E+ AV A+ NA+
Sbjct: 291 GAEKLYSIVKDFLGDASSKVVLDLYCGTGTIGQIVAPKAKKVIGVELIEEAVKAANENAK 350
Query: 645 INGIKNCRFVCAKAEDVM 662
+NG+ NC F+ V+
Sbjct: 351 LNGLNNCEFIAGDVAKVI 368
>gi|379796251|ref|YP_005326250.1| Uncharacterized RNA methyltransferase [Staphylococcus aureus subsp.
aureus MSHR1132]
gi|356873242|emb|CCE59581.1| Uncharacterized RNA methyltransferase [Staphylococcus aureus subsp.
aureus MSHR1132]
Length = 453
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 95/358 (26%), Positives = 148/358 (41%), Gaps = 76/358 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H+SY QL KK + + + RKA V++ + IG +
Sbjct: 85 LQHLSYEAQLAMKKEQVINLFQ------RKAHFENVTIND------TIG---------MD 123
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
+P YRNK + VG + Q + +GF +R+ + + C + ++ +
Sbjct: 124 NPW--RYRNKSQIPVGKNQQEQVIMGF----YRQRSHDIIDMESCLIQDTQHQEVMNVVK 177
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
L ++ ++ G R L VR G + ++M+I +
Sbjct: 178 TILNDLNISIYQEQLKKGLIRHLVVRTGY------------------HTDDMMIIFVTNG 219
Query: 487 ATF--DDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSI 544
+ DAVV +R+ +AF P++ I D SNV L L
Sbjct: 220 KKWPQKDAVV----QRMLQAF--------PNVTSIKQNINDSH--SNVIMGRQSLTLYG- 264
Query: 545 PKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTL 604
+ I D +S F IS +F+Q+N+ EKLY+ D+A L + +
Sbjct: 265 --------------KDTIIDQLSESTFKISDQSFYQINSEQTEKLYNKAIDYAQLTGNEV 310
Query: 605 LFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
+ D CG GTIGL +A V G+E+ SA+ DA +NA IN N FVC KAEDV+
Sbjct: 311 VLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIKDAQQNATINQCNNTTFVCGKAEDVI 368
>gi|322372576|ref|ZP_08047112.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
C150]
gi|321277618|gb|EFX54687.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
C150]
Length = 451
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 100/417 (23%), Positives = 165/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLA----GDGSGLKVKSARDVVTPLAHMSYSVQL 316
++A+PGE+ + G G E + R + HM+Y QL
Sbjct: 33 DNALPGEVIKMRVLKLKKNIGFGKVEEYVTLSPNRNQDIDATYLRSGIADFGHMNYEEQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K+ + L K G+S ++ LG YRNK
Sbjct: 93 KFKRKQVVDNLYKTA---------GIS--------------DVEVAETLGMETPYAYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF-QEFLQQSDLP 435
+ V ++ + GF N + + P++ + + +F ++ L++ DL
Sbjct: 130 AQVPVR-RVKGQLETGFYRKNSHDLI-----PIEDFLIQDKEIDKLIVFVRDLLRRYDLK 183
Query: 436 VWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVN 495
++ + +G R L VR G G+ M++ V++
Sbjct: 184 PYDEKEQTGLIRHLVVRRGHYSGQ-------------------MMLVFVTT--------R 216
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
+ R+ + A + + P +IQ+ + A R L G+
Sbjct: 217 PKIFRIDQVIAK----ITEAFPNVVSIIQNINDKNTNAIFGKEFRTLY-----GQDT--- 264
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
I DS+ + IS +F+QVNT AEKLY D++DL D+++ D G GTI
Sbjct: 265 ------ITDSMLGNDYEISAQSFYQVNTEMAEKLYQTAIDFSDLNSDSIVIDAYSGIGTI 318
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL+ A +V V G+E+ +AV DA +NAE NGI N +V AE+ M KD + P
Sbjct: 319 GLSFAKQVKEVYGVEVIETAVEDAKKNAERNGITNAHYVADSAENAMAKWSKDGIKP 375
>gi|417925254|ref|ZP_12568681.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Finegoldia magna
SY403409CC001050417]
gi|341592551|gb|EGS35437.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Finegoldia magna
SY403409CC001050417]
Length = 442
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 81/301 (26%), Positives = 136/301 (45%), Gaps = 58/301 (19%)
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLG-NFREGVTAVEEPVDCPNVSEIACKYASIF 425
SP++ GYRNK E++ G S++ P V LG + + + + VDC + E K
Sbjct: 113 SPILQGYRNKMEYTFGDSVKGGPLV---LGLHTKNKFYEITDTVDCNIIDEGFNKIRQAV 169
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
QE+ + + + + K++G R +R+ S + + NL E N+++ + A+
Sbjct: 170 QEYFRDKNYEFFKKIKHTGLLRHFIIRKSFSDDEYMI--NLVTTSDEFNVNDFVEFAK-- 225
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
D+ +V+ I D+ +S+ D L LL
Sbjct: 226 --QIDNRIVS-----------------------IYHTINDN--ISDAVIVDK-LELLY-- 255
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYS----LGGDWADLGP 601
+ + + I+ L F ISP +FFQ N AE++Y+ L GD + G
Sbjct: 256 ------------GKEYLTEKINGLEFRISPFSFFQPNPAQAEQIYTRALELAGDLS--GK 301
Query: 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661
+ ++D+ CGTGTI A + VIG+E+ A AV A NA++NG+ N +F+C +
Sbjct: 302 N--VYDLYCGTGTIAQIFAKKAESVIGVEIVAEAVEKAQENAKLNGLTNTKFICDDCLNF 359
Query: 662 M 662
M
Sbjct: 360 M 360
>gi|242371794|ref|ZP_04817368.1| TrmA family RNA methyltransferase [Staphylococcus epidermidis
M23864:W1]
gi|242350495|gb|EES42096.1| TrmA family RNA methyltransferase [Staphylococcus epidermidis
M23864:W1]
Length = 453
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 93/384 (24%), Positives = 155/384 (40%), Gaps = 85/384 (22%)
Query: 292 GSGLKVKS-ARDVVTP------------LAHMSYSVQLEHKKNSIAQMLKKLTRNARKAC 338
G L+VK ++D +TP L HM+Y QL+ KK + + + + K
Sbjct: 57 GKLLEVKKESKDRITPPCMYYYKCGGCQLQHMTYQAQLDMKKEQVVNLFHR--KGPFKDT 114
Query: 339 PNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNF 398
P + +G YRNK + VG + + +GF +
Sbjct: 115 P---------------------INPTVGMEQPWRYRNKSQIPVGKNKDGQVIMGF----Y 149
Query: 399 REGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPG 458
R+ + + C E + + +++L + ++ +++ +G R L VR G
Sbjct: 150 RQRSHDIIDMDHCLIQDEQHQEVMNHVKQWLNELNISIYDEQSKTGLIRHLVVRTGH--- 206
Query: 459 KPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPL 518
+ +E+M+I + F + E+L AF P++
Sbjct: 207 ---------------HTNEMMVIFVTNGKKFKHS--EMLVEKLKNAF--------PNITS 241
Query: 519 TALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAF 578
I D SNV + L + +I D +S + F IS +F
Sbjct: 242 IKQNINDSH--SNVIMGRHSVTLYG---------------KEKIVDQLSEVTFNISDQSF 284
Query: 579 FQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSD 638
+Q+N+ EKLY D+A L + ++ D CG GTIGL +A + V G+E+ SA+ D
Sbjct: 285 YQINSAQTEKLYQKAIDYAQLTGEEIVLDTYCGIGTIGLYMAPQAKHVYGVEVVPSAIKD 344
Query: 639 AHRNAEINGIKNCRFVCAKAEDVM 662
A NA N + N F C KAED++
Sbjct: 345 AEENATKNQLNNTTFECGKAEDII 368
>gi|399887994|ref|ZP_10773871.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium arbusti
SL206]
Length = 452
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 131/311 (42%), Gaps = 54/311 (17%)
Query: 360 KLEGILGSPLVNGYRNKCEFSVG-YSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIA 418
+ EGI SP YRNK EF+ G + T+G + N G+ V+E V P I
Sbjct: 111 QYEGIERSPKEFEYRNKMEFTFGDMEKDGELTLGMHMKNRSFGIINVQECVLIPKDFRII 170
Query: 419 CKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEV 478
+ + + + K G+ R L +R S N E+
Sbjct: 171 L---DTIVSYFRNKNASYYKIMKVEGYLRNLVIR------------------STENTDEI 209
Query: 479 ML-IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADA 537
++ + S + D+ E + K S + ++ + ++++ AD
Sbjct: 210 LVNLVTTSKGSCDE-------EEIVKLLMDLELNSK----IVGILHTTNDSLADMVAADR 258
Query: 538 PLRLLSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGD 595
D++ R I + + L+F ISP +FFQ NTL AEKLYS+ D
Sbjct: 259 I-----------------DIIYGRDYIIEKVLGLKFKISPLSFFQTNTLGAEKLYSIVMD 301
Query: 596 WADLGPDTLLFDVCCGTGTIG-LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
+ ++FD+ CGTGTIG + + + VIGIE+ AV A+ NAE+N + NC F+
Sbjct: 302 FVGKLDSKMIFDLYCGTGTIGQIAASKKAKKVIGIELIEEAVKAANENAELNNLDNCTFI 361
Query: 655 CAKAEDVMGSL 665
V+ L
Sbjct: 362 AGDVAKVIQEL 372
>gi|339442887|ref|YP_004708892.1| SAM-dependent methyltransferase [Clostridium sp. SY8519]
gi|338902288|dbj|BAK47790.1| SAM-dependent methyltransferase [Clostridium sp. SY8519]
Length = 462
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 94/366 (25%), Positives = 148/366 (40%), Gaps = 89/366 (24%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L HMSY+ QL+ K + L + IGG L +
Sbjct: 82 LQHMSYARQLQFKTEKVRNNLMR------------------------IGGFDEALLQQIM 117
Query: 367 SPLVN-----GYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPV-DCPNVSEIACK 420
P++ YRNK +F VG K G ++ F G T P DC E +
Sbjct: 118 EPIIGMEDPWRYRNKAQFPVG-----KDRNGHIVTGFYAGRTHRIIPTRDCMLGIEENQE 172
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
+ +++ + ++ G R + +R G S G+ L L +N +E+ +E
Sbjct: 173 ILDLIIVHMERYHIEPYDESTGKGLVRHVLIRSGYSTGELLAC--LIINGTELPYAE--- 227
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
+++ F G T+ S
Sbjct: 228 --ELADRLFT---------------VPGMTSLS--------------------------- 243
Query: 541 LLSIPKADGEPEESNDVVEARIH----DSISNLRFCISPTAFFQVNTLAAEKLYSLGGDW 596
L++ ++ G +V+ R H D+I +R+ ISP +FFQVN + EKLY+ ++
Sbjct: 244 -LNVNRSRGNRILGEEVILLRGHAAITDTIGAVRYQISPKSFFQVNPVQTEKLYATALEY 302
Query: 597 ADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCA 656
A L ++D+ CG GTI L LA + V G+E+ AV DA NAE+NG +N RF
Sbjct: 303 AGLTGGETVWDLYCGIGTISLFLAQKAARVYGVEIVPEAVRDAESNAELNGFENTRFFAG 362
Query: 657 KAEDVM 662
KAE+++
Sbjct: 363 KAEEIL 368
>gi|310658947|ref|YP_003936668.1| Uncharacterized RNA methyltransferase BCE_0363 [[Clostridium]
sticklandii]
gi|308825725|emb|CBH21763.1| Uncharacterized RNA methyltransferase BCE_0363 [[Clostridium]
sticklandii]
Length = 475
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 97/371 (26%), Positives = 159/371 (42%), Gaps = 81/371 (21%)
Query: 304 VTPLAH---------MSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
V P+AH ++YS QLE KK+ + Q L+R + PN +M + I
Sbjct: 88 VCPIAHSCGGCQIMQLNYSKQLEIKKDIVVQ---NLSRIGKVENPN-------VMDT--I 135
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
G + +P YRNK +F VG + KP +GF F++ + C
Sbjct: 136 G---------MDNPY--NYRNKAQFPVGIDKKGKPVMGF----FKKMSHEIIPLTTCYVQ 180
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+ I ++++++ + +++ + G R + + G +
Sbjct: 181 DTVNDVILDIIRQYIEKYKISLYDEKTHKGNLRHVVTKVG------------------FH 222
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
E+M+I V+ T +L K A + L L LV + +NV
Sbjct: 223 THEIMVIL-VTKET-----------KLPKIDALVEMLEAKLLGLRTLVQNINPNRTNVIL 270
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
R I DG I D+I +L F ISP +F+QVN + + LY+
Sbjct: 271 G----RENKILYGDG-----------IIEDTIDDLVFEISPLSFYQVNPIQTKVLYNKAL 315
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
+ AD+ + +++D+ CG GTI L LA + V GIE+ A+ +A +NA+ N I+N F
Sbjct: 316 ELADISSEDVVYDIYCGIGTISLFLAKKAKHVYGIEIVKEAIENAKKNAKRNNIENASFY 375
Query: 655 CAKAEDVMGSL 665
KAE+V+ L
Sbjct: 376 AGKAEEVVPEL 386
>gi|366089481|ref|ZP_09455954.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus acidipiscis KCTC
13900]
Length = 456
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 90/372 (24%), Positives = 141/372 (37%), Gaps = 80/372 (21%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKL-TRNARKACPNGVSLPEWIMKSREIGGLPCKLE 362
+ PL H +Y QL++K+ + +L+K + A G+ P
Sbjct: 85 IAPLQHWAYPAQLKYKRKLVVDLLQKAHLSHLEVAQTVGMDEPRH--------------- 129
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYA 422
YRNK + Q + T GF + + + P + E+
Sbjct: 130 ----------YRNKAQVP-ARECQGQLTTGFFRRGSHNFIPLEDYEIQDPRIDEVILAVR 178
Query: 423 SIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIA 482
I +EF ++P +N K++G R + VR G G EVM++
Sbjct: 179 DILREF----NVPAYNEEKHTGVIRNVMVRRGHYSG------------------EVMVVL 216
Query: 483 QVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLL 542
+ A AG +A + +Q N+ P + L
Sbjct: 217 ITRTKKLKGA--------------AGISAKIQEQCPDVVSVQ-----QNINPEQTNVIL- 256
Query: 543 SIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
++ V+ R I D ++ L F IS +F+QVN + EKLY+ + ADL
Sbjct: 257 ---------GKTTKVMRGRNYIQDQLNGLTFNISAQSFYQVNPVQTEKLYARAVELADLH 307
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
D + D CG GTI L+LA V G+E+ A+ DA NA +N + N F AE+
Sbjct: 308 GDETVIDAYCGIGTISLSLAKAAKKVYGVEIVPQAIEDAKENARLNKLDNLHFEVGTAEE 367
Query: 661 VMGSLLKDYLNP 672
M D + P
Sbjct: 368 TMKKWADDGIKP 379
>gi|228476330|ref|ZP_04061031.1| 23S rRNA-methyltransferase RumA [Staphylococcus hominis SK119]
gi|228269613|gb|EEK11119.1| 23S rRNA-methyltransferase RumA [Staphylococcus hominis SK119]
Length = 454
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 84/356 (23%), Positives = 144/356 (40%), Gaps = 72/356 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L HMSY QL+ KK + + K + + + + P +
Sbjct: 84 LQHMSYESQLKMKKQQVVNLFHKKAKLEETVIHDTIGM-----------DYPWR------ 126
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
YRNK + VG K +G+ +R+ + + C E + + +
Sbjct: 127 ------YRNKSQLPVGKDKNNKTIMGY----YRQRSHDIIDMDSCLIQDEKQQELMNDIK 176
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
++L + ++ ++N G R + +R +EVM+I +
Sbjct: 177 QWLNELNVSIYNEKNKKGLLRHVVIRTSHYT------------------NEVMIIFVTNG 218
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
+ F +A + RL + + P++ T++ + SNV + L
Sbjct: 219 SKFKEA--ETLVHRLTEVY--------PNI--TSIKQNINNSHSNVIMGKQSMTLYG--- 263
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
+ +I D +S F IS +F+Q+N++ EKLY D+A L + ++
Sbjct: 264 ------------KDKITDQLSETIFEISDQSFYQINSVQTEKLYQKAIDYAQLSGNEIVL 311
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
D CG GTIGL +A V G+E+ SA+ DA +NA IN N F C KAE+V+
Sbjct: 312 DTYCGIGTIGLYMAPVAKHVYGVEIVPSAIQDAKQNALINHFDNTTFECGKAEEVI 367
>gi|407474468|ref|YP_006788868.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium acidurici
9a]
gi|407050976|gb|AFS79021.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium acidurici
9a]
Length = 455
Score = 96.7 bits (239), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 66/108 (61%)
Query: 561 RIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLA 620
+I D I L+F ISP +FFQ+N++ E LY ++ADL ++D+ CG GTI L LA
Sbjct: 263 KIIDYIGALKFNISPQSFFQINSIQTEILYKKALEYADLKGKETVYDIYCGIGTISLFLA 322
Query: 621 HRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
+ V GIE+ + A+ DA NAE+NGI+N F AE V+ L K+
Sbjct: 323 QKAKKVYGIEVISEAIEDAKENAELNGIENVEFYEGTAETVLPELYKE 370
>gi|430949111|ref|ZP_19486030.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1576]
gi|430557956|gb|ELA97392.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1576]
Length = 457
Score = 96.7 bits (239), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 108/409 (26%), Positives = 165/409 (40%), Gaps = 83/409 (20%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLK-VKS---ARDVVTPLAHMSYSVQL 316
E+A+PGE E G++ G G E + V++ R + PLAH+ Y QL
Sbjct: 38 ENALPGEEVEILVVKAGNKFGYGKVETFITQSPDRQPVENNALLRTGIAPLAHLKYEQQL 97
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K+ + ++ K I K E+ LP +G GYRNK
Sbjct: 98 VFKQKQVEHVMAK------------------IAKMPEVPVLPT-----VGMAEPFGYRNK 134
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + V + + P + + A K + ++ LQ+ +
Sbjct: 135 AQIPVR-RIDGQLATGFYKKNSHDLVPIEDFYIQDPVIDQ-AIK---VVRDILQRFQVRG 189
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
+N KN G R + +R G + S M++ V+
Sbjct: 190 YNEEKNEGQLRHIIIRRG-------------------HYSHEMMVVLVT----------- 219
Query: 497 EFERLAKAFAAG--ATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLLSIPKADGEPEE 553
R K F + A A LP VIQ+ ++ +NV D L
Sbjct: 220 ---RKEKFFKSKEIAEAIHEELPEVVSVIQNINEEKTNVILGDKEKVLYG---------- 266
Query: 554 SNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTG 613
D +E D + + IS +F+QVNT AE LY ++A+L ++ D G G
Sbjct: 267 -RDYIE----DQLLGKTYRISAKSFYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIG 321
Query: 614 TIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
TIGL+LA RV V G+E+ A+ DA N+ N I+N + KAE VM
Sbjct: 322 TIGLSLADRVDKVYGMEVIPEAIEDAQFNSLNNKIENVHYEVGKAEKVM 370
>gi|20808214|ref|NP_623385.1| SAM-dependent methyltransferase [Thermoanaerobacter tengcongensis
MB4]
gi|254479579|ref|ZP_05092891.1| 23S rRNA (uracil-5-)-methyltransferase [Carboxydibrachium pacificum
DSM 12653]
gi|50401615|sp|Q8R933.1|Y1797_THETN RecName: Full=Uncharacterized RNA methyltransferase TTE1797
gi|20516809|gb|AAM24989.1| SAM-dependent methyltransferases related to tRNA
(uracil-5-)-methyltransferase [Thermoanaerobacter
tengcongensis MB4]
gi|214034482|gb|EEB75244.1| 23S rRNA (uracil-5-)-methyltransferase [Carboxydibrachium pacificum
DSM 12653]
Length = 450
Score = 96.7 bits (239), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 92/349 (26%), Positives = 156/349 (44%), Gaps = 76/349 (21%)
Query: 309 HMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSP 368
++SY QL+ KK+ + ++L+K G+ E++ GI SP
Sbjct: 84 NLSYENQLKIKKDVVLKLLEK----------EGIKDFEFL--------------GIERSP 119
Query: 369 LVNGYRNKCEFSVGYSLQAKPTVGFML-GNFREGVTAVEEPVDCPNVSEIACKYASIFQE 427
V GYRNK E++ G + K +G G F + V + C V E K S+
Sbjct: 120 KVYGYRNKMEYTFGTDREGKKALGLHRKGKFYDVVMTDK----CNIVDEDFTKALSLTFN 175
Query: 428 FLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSA 487
+ + +LP +++ + G+ R L VR+ G+ +LI V++
Sbjct: 176 YALEKNLPFYDKKTHEGYLRYLVVRKASKNGE-------------------LLINIVTTT 216
Query: 488 TFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKA 547
+ +F+ L + + + +S+ LV H N + +DA +
Sbjct: 217 Q-----LKHKFDDLVELYRSANFSST-------LVGVLHT--YNDSWSDAVIC------- 255
Query: 548 DGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
E +V+ R + + + L+F IS +FFQ N+ AE++YS ++A + +
Sbjct: 256 -----EKLEVLYGRDYLIEELLGLKFKISAFSFFQTNSYGAERIYSTVREFAGDVSNKTI 310
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
FD+ CGTGTIG+ +A VIGIE+ AV A NA +NG++N F+
Sbjct: 311 FDLYCGTGTIGIVMAPLARKVIGIELVEEAVFSAKENAALNGLENAVFI 359
>gi|357236080|ref|ZP_09123423.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus criceti
HS-6]
gi|356884062|gb|EHI74262.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus criceti
HS-6]
Length = 452
Score = 96.7 bits (239), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 91/373 (24%), Positives = 155/373 (41%), Gaps = 75/373 (20%)
Query: 301 RDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCK 360
R + L H++Y QL+ K+ + L K+ G+S ++ LP
Sbjct: 77 RTGIADLGHLAYDKQLDFKRQQVVNNLTKIA---------GIS---------DVEVLPT- 117
Query: 361 LEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
LG YRNK + V ++ + GF N + V P++ + +
Sbjct: 118 ----LGMDQPYAYRNKAQVPVR-RVRGQLETGFFRKNSHDLV-----PIEDFYIQDKEID 167
Query: 421 YASIF-QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVM 479
+F ++ L++ DL ++ + +G R L VR G G+ + +
Sbjct: 168 KLIVFVRDLLRRYDLKPYDEKEQTGLIRNLVVRRGHYTGQMM-----------------L 210
Query: 480 LIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL 539
++ S F + E++ AF P +IQ+ + +
Sbjct: 211 VLVTTRSKIFR---IEQMIEQITTAF-----------PAVKSIIQNINDKATNVVLGSEF 256
Query: 540 RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
R L G+ I DS+ ++ IS +F+QVNT+ AEKLY D+++L
Sbjct: 257 RTLY-----GKDT---------IIDSMLGNQYEISAQSFYQVNTVMAEKLYQTAIDFSEL 302
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659
+ ++ D G GTIGL++A +V V G+E+ +AV DA +NA +NGI N ++ AE
Sbjct: 303 SKEDVVIDAYSGIGTIGLSVAKQVKAVYGVEVIKAAVKDAEKNAALNGIANAHYIADSAE 362
Query: 660 DVMGSLLKDYLNP 672
M K + P
Sbjct: 363 KAMAKWSKQGIKP 375
>gi|410594231|ref|YP_006950958.1| RNA methyltransferase [Streptococcus agalactiae SA20-06]
gi|421531527|ref|ZP_15977909.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
agalactiae STIR-CD-17]
gi|403643350|gb|EJZ04132.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
agalactiae STIR-CD-17]
gi|410517870|gb|AFV72014.1| RNA methyltransferase [Streptococcus agalactiae SA20-06]
Length = 458
Score = 96.7 bits (239), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 106/417 (25%), Positives = 164/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGN-DEGLAGD---GSGLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGE+ + G G +E L GL R + L H++Y QL
Sbjct: 33 ENALPGEIIKMRVLKLRKRIGYGKVEEYLTTSPHRNEGLDYTYLRTGIADLGHLTYDQQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K+ +A L K+ + +E LG + YRNK
Sbjct: 93 LFKQKQVADNLYKIAHIS-----------------------DVLVEPTLGMTIPLAYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF-QEFLQQSDLP 435
+ V + + GF N V P++ + E F ++ L+Q D+
Sbjct: 130 AQVPVR-RVDGQLETGFFRKNSHTLV-----PIEDYLIQEKEIDALINFTRDLLRQFDIK 183
Query: 436 VWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVN 495
++ + SG R + VR G G+ + +++ F ++
Sbjct: 184 PYDEEQQSGLIRNIVVRRGHYTGQLM-----------------LVLVTTRPKIFR---ID 223
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
E+L AF PS+ I D SNV I + +
Sbjct: 224 QMIEKLVSAF--------PSVVSIMQNINDRN--SNV-----------IFGKEFRTLYGS 262
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
D +E D + + IS +F+QVNT AEKLY D++ L + ++ D G GTI
Sbjct: 263 DTIE----DQMLGNTYAISAQSFYQVNTEMAEKLYKKAIDFSALNSEDIVIDAYSGIGTI 318
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL++A +V V G+E+ AVSDA NA NGI N +V AE+ M LK+ + P
Sbjct: 319 GLSVAKQVKHVYGVEVVEKAVSDAKENATRNGITNSTYVADSAENAMAKWLKEGIKP 375
>gi|431741806|ref|ZP_19530707.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2039]
gi|430601148|gb|ELB38764.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2039]
Length = 460
Score = 96.7 bits (239), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 95/367 (25%), Positives = 146/367 (39%), Gaps = 71/367 (19%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H++Y QL+ KK+ + Q L+K P G R LP +G
Sbjct: 87 LQHLAYQAQLDFKKDLLLQALEKFK-------PAGF---------RSYQLLPT-----IG 125
Query: 367 SPLVNGYRNKCEFSVGYSLQA-KPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF 425
YRNK +F + + Q K G N + V + V P ++ +
Sbjct: 126 MDDPWHYRNKAQFQLRKNKQTQKAEAGLYEANSHQLVPITDCLVQEPRTQKVMNTVVQLL 185
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
+F D P+++ NSG +R + VR G G+ +V+ I +
Sbjct: 186 NKF----DAPIYDERTNSGIFRTIMVRIGVKTGE----------------LQVVFITRSK 225
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
+A++ ERL + + + T+LV+ D +V +A
Sbjct: 226 KFPQKNAMIREINERLPEVVSIMQNVQAQK---TSLVMGDE--TIHVWGKEA-------- 272
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
I + I+ + F +SP AFFQ+N E LY G D PD +
Sbjct: 273 ----------------IEEQINEVTFDLSPRAFFQLNPQQTELLYGEGIKALDAQPDETI 316
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
D CG GTIGL++A +V V G++ A++DA RNAE G N R+ AE V+
Sbjct: 317 VDAYCGVGTIGLSVAKKVKEVRGMDTVPQAIADAKRNAERLGYHNTRYEVGTAEQVLPKW 376
Query: 666 LKDYLNP 672
L + P
Sbjct: 377 LNEGFQP 383
>gi|314936049|ref|ZP_07843398.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus hominis
subsp. hominis C80]
gi|313655866|gb|EFS19609.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus hominis
subsp. hominis C80]
Length = 454
Score = 96.7 bits (239), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 84/357 (23%), Positives = 143/357 (40%), Gaps = 74/357 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPE-WIMKSREIGGLPCKLEGIL 365
L HMSY QL+ KK + + K + + + + W
Sbjct: 84 LQHMSYESQLKMKKQQVVNLFHKKAKLEETVIHDTIGMDHPW------------------ 125
Query: 366 GSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF 425
YRNK + VG K +G+ +R+ + + C E + +
Sbjct: 126 ------RYRNKSQLPVGKDKNNKTIMGY----YRQRSHDIIDMDSCLIQDEKQQELMNDI 175
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
+++L + ++ ++N G R + +R +EVM+I +
Sbjct: 176 KQWLNELNVSIYNEKNKKGLLRHVVIRTSHYT------------------NEVMIIFVTN 217
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
+ F +A + RL + + P++ T++ + SNV + L
Sbjct: 218 CSKFKEA--ETLVHRLTEVY--------PNI--TSIKQNINNSHSNVIMGKQSMTLYG-- 263
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
+ +I D +S F IS +F+Q+N++ EKLY D+A L + ++
Sbjct: 264 -------------KDKITDQLSETIFEISDQSFYQINSVQTEKLYQKAIDYAQLSGNEIV 310
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
D CG GTIGL +A V G+E+ SA+ DA +NA IN N F C KAE+V+
Sbjct: 311 LDTYCGIGTIGLYMAPVAKHVYGVEIVPSAIQDAKQNALINHFDNTTFECGKAEEVI 367
>gi|167750197|ref|ZP_02422324.1| hypothetical protein EUBSIR_01171 [Eubacterium siraeum DSM 15702]
gi|167656759|gb|EDS00889.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium siraeum
DSM 15702]
Length = 493
Score = 96.7 bits (239), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 92/369 (24%), Positives = 152/369 (41%), Gaps = 81/369 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H+SY QL K+ + + IGGL + I+
Sbjct: 82 LRHISYEAQLRAKEQFVKDAFTR------------------------IGGLSPEFLPIIR 117
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
+ +NGYRNK + +G GF + + E+ + P++ + I
Sbjct: 118 NTNINGYRNKLQIPIGTDKDGNLIAGFYAFHSHR-IVPCEKCLLQPDI------FLKITA 170
Query: 427 EFLQQS---DLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
+FL+ S +L ++ + G R L +R+G G+ + N+ E+ I
Sbjct: 171 DFLKISTGLNLTAYDETTHKGILRHLYLRKGYYSGEICLCIVVAKNVPEIKILS------ 224
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLS 543
+RL + + + + VI + +NV D + L S
Sbjct: 225 ---------------DRLLEKYPE----------IVSSVINVNNRDTNVILGDEEIVLTS 259
Query: 544 IPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDT 603
N + + ++++ I+P AF+QVNT AE+LYS D+A+ T
Sbjct: 260 ----------KNYICDIMCKNAVN-----IAPKAFYQVNTPCAEQLYSSACDFAEPKGKT 304
Query: 604 LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMG 663
+L D+ CG GTIGL++A +IG+E+ A+ +A +NA NGI NC F+CA A +
Sbjct: 305 VL-DLYCGAGTIGLSMARTAKKIIGVEIVPEAIENAKQNALANGITNCEFICADAAEAAR 363
Query: 664 SLLKDYLNP 672
L L P
Sbjct: 364 ILHSRNLRP 372
>gi|404483407|ref|ZP_11018630.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridiales
bacterium OBRC5-5]
gi|404343680|gb|EJZ70041.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridiales
bacterium OBRC5-5]
Length = 463
Score = 96.7 bits (239), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 87/359 (24%), Positives = 148/359 (41%), Gaps = 76/359 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLP---CKLEG 363
L + YS +L K+N + LK+ IGG ++E
Sbjct: 90 LQSLDYSAELRLKQNKVENHLKR------------------------IGGFDLSNVEIEE 125
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
I+G YRNK +F G K G+ G ++ E DC E
Sbjct: 126 IIGMEDPIRYRNKSQFPFGRK-DGKNITGYFAGR----THSIVEFDDCIIGIEENKTVLK 180
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
+F+++ D+P ++ G R + +R+G + G+ + V ++
Sbjct: 181 AVLDFMEKYDIPAYDEESGKGVVRHVLIRKGFATGELM----------------VCIVIN 224
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLS 543
++ D +V E L A + L ++ I ++ +NV D + L
Sbjct: 225 ANNLPHSDKLV----EILCSALGS---------DLKSVSININKKNTNVILGDTTVTLYG 271
Query: 544 IPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDT 603
I D I +++F ISP +F+QVN + +KLYS ++A L
Sbjct: 272 ---------------NGYIEDYIGDVKFRISPQSFYQVNPVQTKKLYSKALEYAALTGKE 316
Query: 604 LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
++D+ CG GTI L LA V G+E+ +A+ +A NA++N I+N +F KAE+++
Sbjct: 317 TVWDMYCGIGTISLFLAKSAKFVYGVEIVDAAIQNARENAKLNNIENVKFFVGKAEEII 375
>gi|418618812|ref|ZP_13181667.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus hominis
VCU122]
gi|374826691|gb|EHR90578.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus hominis
VCU122]
Length = 454
Score = 96.7 bits (239), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 84/356 (23%), Positives = 144/356 (40%), Gaps = 72/356 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L HMSY QL+ KK + + K + + + + P +
Sbjct: 84 LQHMSYESQLKMKKQQVVNLFHKKAKLEETVIHDTIGM-----------DYPWR------ 126
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
YRNK + VG K +G+ +R+ + + C E + + +
Sbjct: 127 ------YRNKSQLPVGKDKNNKTIMGY----YRQRSHDIIDMDSCLIQDEKQQELMNDIK 176
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
++L + ++ ++N G R + +R +EVM+I +
Sbjct: 177 QWLNELNVSIYNEKNKKGLLRHVVIRTSHYT------------------NEVMIIFVTNG 218
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
+ F +A + RL + + P++ T++ + SNV + L
Sbjct: 219 SKFKEA--ETLVHRLTEVY--------PNI--TSIKQNINNSHSNVIMGKQSMTLYG--- 263
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
+ +I D +S F IS +F+Q+N++ EKLY D+A L + ++
Sbjct: 264 ------------KDKITDQLSETIFEISDQSFYQINSVQTEKLYQKAIDYAQLSGNEIVL 311
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
D CG GTIGL +A V G+E+ SA+ DA +NA IN N F C KAE+V+
Sbjct: 312 DTYCGIGTIGLYMAPVAKHVYGVEIVPSAIQDAKQNALINHFDNTTFECGKAEEVI 367
>gi|219856479|ref|YP_002473601.1| hypothetical protein CKR_3136 [Clostridium kluyveri NBRC 12016]
gi|219570203|dbj|BAH08187.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 478
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 88/361 (24%), Positives = 153/361 (42%), Gaps = 60/361 (16%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H+SY QL K+N + L+++ + +S + I + G KL +G
Sbjct: 95 LQHLSYDGQLSFKENRVKDCLERIGK------LQVISGEQSIHQH----GSVTKLYHTIG 144
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
YRNK + VG S G +G + + + C SE + K + +
Sbjct: 145 MENPYRYRNKVQLPVGSSKN-----GINIGFYAKKSHEIINMTSCFIQSETSDKIVKLIR 199
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
+++++ ++ +N G R + +RE + + + V+++ VS
Sbjct: 200 QWIEKYNIEPYNEKNGKGIIRHIMIREAFTTAEIM----------------VVIVTAVSH 243
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
+ K F T + P + ++V ++ +NV + L
Sbjct: 244 LPYK------------KEFIEIITRNVPVIK--SIVQNINRDRTNVIMGKECIILWG--- 286
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
I+D I +F ISP +FFQVN + E LY+ ++A L + ++F
Sbjct: 287 ------------RDTINDYIGKFKFSISPLSFFQVNPVQTEVLYNKVLEYAGLTGNEVIF 334
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
D CGTGTI L L+ + V G+E+ A+ +A+ NA NGI N F+ K+E V+ L+
Sbjct: 335 DAYCGTGTISLFLSQKAKKVYGVEIIPQAIENANMNAAENGIDNVEFITGKSEKVIPELI 394
Query: 667 K 667
K
Sbjct: 395 K 395
>gi|449980400|ref|ZP_21817176.1| putative RNA methyltransferase [Streptococcus mutans 5SM3]
gi|449177012|gb|EMB79332.1| putative RNA methyltransferase [Streptococcus mutans 5SM3]
Length = 453
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 94/378 (24%), Positives = 149/378 (39%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L V R + L H++Y QL K + L K+ G+S
Sbjct: 71 LTVDYLRTGIADLGHLTYGQQLNFKCKQVINSLSKIA---------GIS----------- 110
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
+ LG YRNK + V + + GF N + + + + +
Sbjct: 111 ---DIDVADTLGMDNPTAYRNKAQVPVR-RVNGQLETGFFRKNSHDLMPIEDYYIQDKEI 166
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+ + ++ L++ DL ++ + +G R L VR G G+ +
Sbjct: 167 DRLI----NFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYTGQIM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++ S F + E++ F P +IQ+ + A
Sbjct: 210 ----LVLVTTRSKIFR---IEQMIEKIVSEF-----------PAVKSIIQNINDRNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
+ R L GE D +E D + R+ IS +F+QVNT+ AEKLY
Sbjct: 252 FGSEFRTLY-----GE-----DTIE----DIMLGNRYIISAQSFYQVNTVMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D++DL PD + D G GTIGL+ A +V V G+E+ +AV DA +NA +N I N +V
Sbjct: 298 DFSDLTPDDTVIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
AE M S K + P
Sbjct: 358 ADSAEKAMASWSKRGIKP 375
>gi|170761366|ref|YP_001788185.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A3 str. Loch Maree]
gi|169408355|gb|ACA56766.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A3 str. Loch Maree]
Length = 450
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 85/318 (26%), Positives = 136/318 (42%), Gaps = 53/318 (16%)
Query: 348 IMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVG-YSLQAKPTVGFMLGNFREGVTAVE 406
+ KS+EI G LE + SP YRNK EF+ G T+G + N + V+
Sbjct: 101 LFKSKEIKGFDF-LE-VEKSPEEYEYRNKMEFTFGDMEKGGDLTLGMHVKNRNFSIVTVD 158
Query: 407 EPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENL 466
+ C V + + + LP + + GF R L +R+ ++ G+ L
Sbjct: 159 K---CEIVDRDFRNILTTVVNYFNEKRLPKYRVMSHEGFLRNLVIRKAKNTGEIL----- 210
Query: 467 EVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDH 526
+NI S FD + + L K G + ++ +
Sbjct: 211 ------INI------VTTSQMEFDFKEI---VDMLLKVECKGE--------IKGILHTIN 247
Query: 527 QGVSNVAPADAPLRLLSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTL 584
+S+V D +++ R I + + L+F I+P AFFQ N+
Sbjct: 248 DTLSDVVQVDKL-----------------EILYGRDYIIEELLGLKFKIAPEAFFQTNSK 290
Query: 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAE 644
AEKLYS+ D+ ++FD+ CGTGTIG +A + VIG+E+ AV A+ NA+
Sbjct: 291 GAEKLYSIVKDFLGDASSKVVFDLYCGTGTIGQIVAPKAKKVIGVELIEEAVKAANENAK 350
Query: 645 INGIKNCRFVCAKAEDVM 662
+NG+ NC F+ V+
Sbjct: 351 LNGLNNCEFIAGDVAKVI 368
>gi|254556113|ref|YP_003062530.1| RNA methyltransferase [Lactobacillus plantarum JDM1]
gi|254045040|gb|ACT61833.1| RNA methyltransferase [Lactobacillus plantarum JDM1]
Length = 457
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 94/371 (25%), Positives = 151/371 (40%), Gaps = 78/371 (21%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ PL H+ YS QL+ K++ +A++ K+ + + P IG
Sbjct: 85 IAPLQHLEYSEQLKFKQHQVAELFAKVHMDDVEVLPT-------------IG-------- 123
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
+ +P YRNK + V +Q + T GF N + + + + P + K
Sbjct: 124 -MANP--TQYRNKAQVPVR-QVQGQLTTGFYKKNSHQLMPIEDYYIQDPAID----KAIV 175
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
+ ++ L++ ++ F +SG R + VR G + + V+++ +
Sbjct: 176 VVRDILRKYHEAAYDEFHHSGTIRTIMVRRGYYSHEMM----------------VVIVTR 219
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLS 543
D VV E + +LP VIQ NV + L
Sbjct: 220 TKHLPMAD-VVTQEIQ--------------AALPEVVSVIQ------NVNSKKTNVILGP 258
Query: 544 IPKADGEPEESNDVV--EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGP 601
+ N+V+ +A I D + L F IS +F+QVN EKLY L D A L
Sbjct: 259 V----------NNVLAGKATIDDQLLGLTFAISAQSFYQVNPQQTEKLYQLAIDQAGLTG 308
Query: 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661
+ + D G GTI LT+A V G+E+ +A+ +A +NA+ NGI N FV AE
Sbjct: 309 NETVIDAYSGIGTISLTMAQHAKQVYGVEIVPAAIDNARQNADKNGITNATFVLDSAEKA 368
Query: 662 MGSLLKDYLNP 672
M D + P
Sbjct: 369 MAKWQSDGVKP 379
>gi|339637206|emb|CCC16097.1| uncharacterized RNA methyltransferase lp_1151 [Lactobacillus
pentosus IG1]
Length = 458
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 93/371 (25%), Positives = 151/371 (40%), Gaps = 78/371 (21%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ PL H+ YS QL+ K++ +A++ K+ + + P IG
Sbjct: 85 IAPLQHLEYSEQLKFKQHQVAELFAKVHMDDVEVLPT-------------IG-------- 123
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
+ +P YRNK + V +Q + T GF N + + + + P + K
Sbjct: 124 -MDNP--TQYRNKAQVPVR-QVQGQLTTGFYKKNSHQLMPIEDYYIQDPEID----KAIV 175
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
+ ++ L++ ++ F +SG R + VR G + + V+++ +
Sbjct: 176 VVRDILRKYHEAAYDEFHHSGTIRTIMVRRGYYSHEMM----------------VVIVTR 219
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLS 543
D VV E + +LP VIQ NV + L
Sbjct: 220 TKHLPMAD-VVTQEIQ--------------AALPEVVSVIQ------NVNSKKTNVILGP 258
Query: 544 IPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGP 601
+ N+V+ + I D + L F IS +F+QVN EKLY L D A L
Sbjct: 259 V----------NNVLAGKSTIDDQLLGLTFAISAQSFYQVNPQQTEKLYQLAIDRAGLTG 308
Query: 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661
+ + D G GTI LT+A V G+E+ +A+ +A +NA+ NGI N +FV AE
Sbjct: 309 NETVIDAYSGIGTISLTMAQHAKQVYGVEIVPAAIDNARQNADKNGITNAKFVLDSAEKA 368
Query: 662 MGSLLKDYLNP 672
M D + P
Sbjct: 369 MAKWQADGIKP 379
>gi|313890778|ref|ZP_07824403.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pseudoporcinus SPIN 20026]
gi|416851781|ref|ZP_11908926.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pseudoporcinus LQ 940-04]
gi|313120879|gb|EFR43993.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pseudoporcinus SPIN 20026]
gi|356739270|gb|EHI64502.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pseudoporcinus LQ 940-04]
Length = 453
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 67/111 (60%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I DSI + IS +F+QVNT+ AEKLY D++DL D ++ D G GTIGL+ A
Sbjct: 265 ITDSILGNDYMISAQSFYQVNTVMAEKLYQTAIDFSDLSADDVVIDAYSGIGTIGLSFAK 324
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
+V V G+E+ +AV DA +NAE NGI+N F+ AE M K+ + P
Sbjct: 325 KVKKVYGVEVIEAAVKDARKNAERNGIRNAEFLVGSAEAAMEKWSKEGIKP 375
>gi|334882581|emb|CCB83616.1| uncharacterized RNA methyltransferase lp_1151 [Lactobacillus
pentosus MP-10]
Length = 458
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 93/371 (25%), Positives = 151/371 (40%), Gaps = 78/371 (21%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ PL H+ YS QL+ K++ +A++ K+ + + P IG
Sbjct: 85 IAPLQHLEYSEQLKFKQHQVAELFAKVHMDDVEVLPT-------------IG-------- 123
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
+ +P YRNK + V +Q + T GF N + + + + P + K
Sbjct: 124 -MDNP--TQYRNKAQVPVR-QVQGQLTTGFYKKNSHQLMPIEDYYIQDPEID----KAIV 175
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
+ ++ L++ ++ F +SG R + VR G + + V+++ +
Sbjct: 176 VVRDILRKYHEAAYDEFHHSGTIRTIMVRRGYYSHEMM----------------VVIVTR 219
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLS 543
D VV E + +LP VIQ NV + L
Sbjct: 220 TKHLPMAD-VVTQEIQ--------------AALPEVVSVIQ------NVNSKKTNVILGP 258
Query: 544 IPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGP 601
+ N+V+ + I D + L F IS +F+QVN EKLY L D A L
Sbjct: 259 V----------NNVLAGKSTIDDQLLGLTFAISAQSFYQVNPQQTEKLYQLAIDRAGLTG 308
Query: 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661
+ + D G GTI LT+A V G+E+ +A+ +A +NA+ NGI N +FV AE
Sbjct: 309 NETVIDAYSGIGTISLTMAQHAKQVYGVEIVPAAIDNARQNADKNGITNAKFVLDSAEKA 368
Query: 662 MGSLLKDYLNP 672
M D + P
Sbjct: 369 MAKWQADGIKP 379
>gi|33355823|gb|AAQ16244.1| RNA methyl transferase-like [Enterococcus faecalis]
Length = 571
Score = 96.3 bits (238), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 110/462 (23%), Positives = 182/462 (39%), Gaps = 95/462 (20%)
Query: 216 KNAVEELEGISIGNKTLKVANVVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASS 275
KN V E+E I + ++ L VA V P+ + E+A+PGE E
Sbjct: 19 KNDVIEVEIIDLTHEGLGVAKV--------DHYPLFI--------ENALPGEKLEIKVLK 62
Query: 276 NGHEDGNGND-EGLAGDGSGLKVKS---ARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLT 331
G G G L + VK + ++PL H++Y QL K + ++++
Sbjct: 63 TGKSFGYGKVLTVLKSSEQRVPVKDENFTKVGISPLQHLAYGAQLSFKTQQVENVMQR-- 120
Query: 332 RNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTV 391
+ K +E+ LP +G YRNK + V + +
Sbjct: 121 ----------------VAKLQEVPVLPT-----IGMNDPWHYRNKAQIPVR-KIDNQLQT 158
Query: 392 GFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTV 451
GF N + + + P + K I +++ + +N N+G R + V
Sbjct: 159 GFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKY----SVKPYNESDNTGNLRHIVV 214
Query: 452 REGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATA 511
R G G+ + V+LI + +V E
Sbjct: 215 RRGYHTGEMM----------------VVLITRTPKLFPISKIVPDILE------------ 246
Query: 512 SSPSLPLTALVIQD-HQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLR 570
++P ++Q+ + +NV D + L +I D+I +L+
Sbjct: 247 ---AIPEVVSIVQNVNPKRTNVIFGDETILLHG---------------SEKITDTIFDLK 288
Query: 571 FCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIE 630
F IS +F+QVN E +Y ++A L + ++ D CG GTIGLTLA V GIE
Sbjct: 289 FEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLAQDAKQVYGIE 348
Query: 631 MNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
+ AV DA NA++N I+N F AE+++ L+++ L P
Sbjct: 349 VIEEAVKDAENNAKLNNIENATFTAGLAEELLPKLVENGLQP 390
>gi|294614134|ref|ZP_06694055.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus faecium E1636]
gi|291592984|gb|EFF24572.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus faecium E1636]
Length = 457
Score = 96.3 bits (238), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 106/407 (26%), Positives = 161/407 (39%), Gaps = 79/407 (19%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLK-VKS---ARDVVTPLAHMSYSVQL 316
E+A+PGE E G++ G G E + V++ R + PLAH+ Y QL
Sbjct: 38 ENALPGEEVEILVVKAGNKFGYGKVETFITQSPDRQPVENNALLRTGIAPLAHLKYEQQL 97
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K+ + ++ K I K E+ LP +G GYRNK
Sbjct: 98 VFKQKQVEHVMAK------------------IAKMPEVPVLPT-----VGMAEPFGYRNK 134
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + V + + P + + A K + ++ LQ+ +
Sbjct: 135 AQIPVR-RIDGQLATGFYKKNSHDLVPIEDFYIQDPVIDQ-AIK---VVRDILQRFQVRG 189
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
+N KN G R + +R G E+M++ F +
Sbjct: 190 YNEEKNEGQLRHIIIRRGHY------------------FHEMMVVLVTRKEKFFKS---- 227
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLLSIPKADGEPEESN 555
A A LP VIQ+ ++ +NV D L
Sbjct: 228 ---------KEIAEAIHEELPEVVSVIQNINEEKTNVILGDKEKVLYG-----------R 267
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
D +E D + + IS +F+QVNT AE LY ++A+L ++ D G GTI
Sbjct: 268 DYIE----DQLLGKTYRISAKSFYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIGTI 323
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
GL+LA RV V G+E+ A+ DA NA N I+N + KAE VM
Sbjct: 324 GLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENVHYEVGKAEKVM 370
>gi|406658700|ref|ZP_11066840.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus iniae 9117]
gi|405578915|gb|EKB53029.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus iniae 9117]
Length = 452
Score = 96.3 bits (238), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 66/111 (59%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I D++ F IS +F+QVNTL AEKLY D++DL D ++ D G GTIGL+ A
Sbjct: 264 ITDTMLGNSFDISAQSFYQVNTLMAEKLYQTAIDFSDLTKDDIVIDAYSGIGTIGLSFAK 323
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
+V V G+E+ SAV DA +NA NGIKN FV AE M K+ L P
Sbjct: 324 QVKKVYGVEVIESAVKDAEKNASKNGIKNVSFVTDSAEAAMEKWSKEGLKP 374
>gi|385811543|ref|YP_005847939.1| SAM-dependent methyltransferase [Ignavibacterium album JCM 16511]
gi|383803591|gb|AFH50671.1| SAM-dependent methyltransferase [Ignavibacterium album JCM 16511]
Length = 483
Score = 96.3 bits (238), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 92/372 (24%), Positives = 152/372 (40%), Gaps = 91/372 (24%)
Query: 310 MSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLP-CKLEGILGSP 368
+SY Q+++K+ + ++ KL GG ++E IL S
Sbjct: 102 LSYQKQIDYKQKQVEEIFYKL------------------------GGFKDFEIENILPSD 137
Query: 369 LVNGYRNKCEFSV-------------GYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVS 415
+ YRNK EFS Q +G + + V V+E C S
Sbjct: 138 EIYFYRNKMEFSFSDKRWLTKQEISSATKFQKDFALGLHIPKIFDKVLDVDE---CFLQS 194
Query: 416 EIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNI 475
E++ + ++F + ++ V++ ++GF R L +R+ ++L VN+
Sbjct: 195 ELSNSILNFTRKFFIKKNVSVYSTKTHTGFLRNLVIRQSYYT------KDLMVNL----- 243
Query: 476 SEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGAT-ASSPSLPLTALVIQDHQGVSNVAP 534
V+S DD ++ + E L + F A T ++ S L+A+ + D++ V
Sbjct: 244 --------VTSEE-DDELLKNYSENLIEYFPAVTTIVNNISKKLSAVAVGDYEKVF---- 290
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
I+D I F IS +FFQ NT AEKLY
Sbjct: 291 ----------------------FGTGFIYDKIGEYTFRISANSFFQTNTRQAEKLYQTAL 328
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
++ADL + +++D+ G GTI + ++ + V E SAV DA NAE+N I N F+
Sbjct: 329 EYADLKGNEVVYDLYSGAGTIAIYISQKAKEVFAFESVQSAVEDAKVNAELNNISNVEFI 388
Query: 655 CAKAEDVMGSLL 666
D+ S L
Sbjct: 389 TT---DLYKSFL 397
>gi|300853527|ref|YP_003778511.1| rRNA (uracil-5-)-methyltransferase [Clostridium ljungdahlii DSM
13528]
gi|300433642|gb|ADK13409.1| rRNA (uracil-5-)-methyltransferase [Clostridium ljungdahlii DSM
13528]
Length = 476
Score = 96.3 bits (238), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 93/365 (25%), Positives = 156/365 (42%), Gaps = 63/365 (17%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L HMSY QL+ KK + L+++ + + + + + KS E KL LG
Sbjct: 86 LQHMSYEGQLDFKKKRVKDCLERIGKFEVEE-QDRIFKDNVLEKSSE--DTSVKLYNTLG 142
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVD---CPNVSEIACKYAS 423
YRNK + VG Q K +GF A E +D C E + K
Sbjct: 143 MTNPYRYRNKVQLPVGKCNQ-KINIGFY-------AKASHEIIDMESCLIQDETSDKIVK 194
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
++++++ ++ ++ G + + R+G + G E+ML+
Sbjct: 195 FMRDWIEKYNIEPYDEKTGRGTIKHIMTRKGFATG------------------EIMLVI- 235
Query: 484 VSSATFDDAVVNSE--FERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRL 541
TF + + + + E + K + + ++V + +NV + L
Sbjct: 236 ---VTFTENLPHKKELVELMCKNISG----------VKSIVHNINNNKTNVILGKKCVNL 282
Query: 542 LSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGP 601
+ I D+I N +F ISP +FFQVN + E LYS ++A L
Sbjct: 283 WG---------------QDTIRDAIGNFKFNISPLSFFQVNPIQTEVLYSKALEYAGLSG 327
Query: 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661
+ ++FD CGTGTI L L+ + V G+E+ A+ +A NAE NG+ N F+ K+E V
Sbjct: 328 NEVVFDAYCGTGTISLFLSQKSKKVYGVEIIDEAIKNARINAEQNGVNNVEFITGKSEVV 387
Query: 662 MGSLL 666
+ L+
Sbjct: 388 IPELI 392
>gi|308180110|ref|YP_003924238.1| RNA methyltransferase [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|418274693|ref|ZP_12890191.1| 23S rRNA methyltransferase, TrmA family [Lactobacillus plantarum
subsp. plantarum NC8]
gi|308045601|gb|ADN98144.1| RNA methyltransferase [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|376010259|gb|EHS83585.1| 23S rRNA methyltransferase, TrmA family [Lactobacillus plantarum
subsp. plantarum NC8]
Length = 457
Score = 96.3 bits (238), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 94/371 (25%), Positives = 151/371 (40%), Gaps = 78/371 (21%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ PL H+ YS QL+ K++ +A++ K+ + + P IG
Sbjct: 85 IAPLQHLEYSEQLKFKQHQVAELFAKVHMDDVEVLPT-------------IG-------- 123
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
+ +P YRNK + V +Q + T GF N + + + + P + K
Sbjct: 124 -MANP--TQYRNKAQVPVR-QVQGQLTTGFYKKNSHQLMPIEDYYIQDPAID----KAIV 175
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
+ ++ L++ ++ F +SG R + VR G + + V+++ +
Sbjct: 176 VVRDILRKYHEAAYDEFHHSGTIRTIMVRRGYYSHEMM----------------VVIVTR 219
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLS 543
D VV E + +LP VIQ NV + L
Sbjct: 220 TKHLPMAD-VVTQEIQ--------------AALPEVVSVIQ------NVNSKKTNVILGP 258
Query: 544 IPKADGEPEESNDVV--EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGP 601
+ N+V+ +A I D + L F IS +F+QVN EKLY L D A L
Sbjct: 259 V----------NNVLAGKATIDDQLLGLTFAISAQSFYQVNPQQTEKLYQLAIDQAGLTG 308
Query: 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661
+ + D G GTI LT+A V G+E+ +A+ +A +NA+ NGI N FV AE
Sbjct: 309 NETVIDAYSGIGTISLTMAQHAKQVYGVEIVPAAIDNARQNADKNGITNATFVLDSAEKA 368
Query: 662 MGSLLKDYLNP 672
M D + P
Sbjct: 369 MAKWQADGVKP 379
>gi|380032064|ref|YP_004889055.1| 23S rRNA methyltransferase, TrmA family [Lactobacillus plantarum
WCFS1]
gi|448820703|ref|YP_007413865.1| putative RNA methyltransferase [Lactobacillus plantarum ZJ316]
gi|50401551|sp|Q88XP4.1|Y1151_LACPL RecName: Full=Uncharacterized RNA methyltransferase lp_1151
gi|342241307|emb|CCC78541.1| 23S rRNA methyltransferase, TrmA family [Lactobacillus plantarum
WCFS1]
gi|448274200|gb|AGE38719.1| putative RNA methyltransferase [Lactobacillus plantarum ZJ316]
Length = 457
Score = 96.3 bits (238), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 94/371 (25%), Positives = 151/371 (40%), Gaps = 78/371 (21%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ PL H+ YS QL+ K++ +A++ K+ + + P IG
Sbjct: 85 IAPLQHLEYSEQLKFKQHQVAELFAKVHMDDVEVLPT-------------IG-------- 123
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
+ +P YRNK + V +Q + T GF N + + + + P + K
Sbjct: 124 -MANP--TQYRNKAQVPVR-QVQGQLTTGFYKKNSHQLMPIEDYYIQDPAID----KAIV 175
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
+ ++ L++ ++ F +SG R + VR G + + V+++ +
Sbjct: 176 VVRDILRKYHEAAYDEFHHSGTIRTIMVRRGYYSHEMM----------------VVIVTR 219
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLS 543
D VV E + +LP VIQ NV + L
Sbjct: 220 TKHLPMAD-VVTQEIQ--------------AALPEVVSVIQ------NVNSKKTNVILGP 258
Query: 544 IPKADGEPEESNDVV--EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGP 601
+ N+V+ +A I D + L F IS +F+QVN EKLY L D A L
Sbjct: 259 V----------NNVLAGKATIDDQLLGLTFAISAQSFYQVNPQQTEKLYQLAIDQAGLTG 308
Query: 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661
+ + D G GTI LT+A V G+E+ +A+ +A +NA+ NGI N FV AE
Sbjct: 309 NETVIDAYSGIGTISLTMAQHAKQVYGVEIVPAAIDNARQNADKNGITNATFVLDSAEKA 368
Query: 662 MGSLLKDYLNP 672
M D + P
Sbjct: 369 MAKWQADGVKP 379
>gi|445374528|ref|ZP_21426408.1| TrmA family tRNA methyltransferase [Streptococcus thermophilus MTCC
5460]
gi|444750614|gb|ELW75415.1| TrmA family tRNA methyltransferase [Streptococcus thermophilus MTCC
5460]
Length = 411
Score = 96.3 bits (238), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 92/373 (24%), Positives = 153/373 (41%), Gaps = 75/373 (20%)
Query: 301 RDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCK 360
R + HM+Y+ QL+ K+ + L K G+S +
Sbjct: 35 RSGIADFGHMTYTEQLKFKRKQVVDNLYKTA---------GIS--------------DVE 71
Query: 361 LEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
+ LG YRNK + V ++ + GF N + + P++ + +
Sbjct: 72 VAETLGMETPYAYRNKAQVPVR-RVKGQLETGFYRKNSHDLI-----PIEDFLIQDKEID 125
Query: 421 YASIF-QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVM 479
+F ++ L++ DL ++ + +G R L VR G G+ M
Sbjct: 126 KLIVFVRDLLRRYDLKPYDEKEQTGLIRHLVVRRGHYSGQ-------------------M 166
Query: 480 LIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL 539
++ V++ + R+ + A T + PS+ +IQ+ + A
Sbjct: 167 MLVFVTT--------KPKVFRIDQVIAK-ITEAFPSI---VSIIQNINDKNTNAIFGKEF 214
Query: 540 RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
R L + ND + IS +F+QVNT AEKLY + D++DL
Sbjct: 215 RTLYGQDTITDRMLGND--------------YEISAQSFYQVNTEMAEKLYQIAIDFSDL 260
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659
D+++ D G GTIGL+ A +V V G+E+ +AV DA +NAE NGI N +V AE
Sbjct: 261 NSDSIVIDAYSGIGTIGLSFAKQVKKVYGVEVIETAVEDAKKNAERNGITNAHYVANSAE 320
Query: 660 DVMGSLLKDYLNP 672
+ M +D + P
Sbjct: 321 NAMAKWSQDGIKP 333
>gi|259502578|ref|ZP_05745480.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus antri
DSM 16041]
gi|259169468|gb|EEW53963.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus antri
DSM 16041]
Length = 479
Score = 96.3 bits (238), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 133/357 (37%), Gaps = 74/357 (20%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ PL H+ Y QL K++ I ++L K + K P
Sbjct: 106 IAPLGHLKYLAQLRFKQHQIEELLAKAHLDGIKVAPT----------------------- 142
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
+G YRNK + V + K GF V + + P + E
Sbjct: 143 -MGMERPYHYRNKAQVPVKL-VHGKLETGFYKRGSHTLVPIEDFYIQDPKIDEAIV---- 196
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
+ ++ L++ + ++ G R + VR G EVM++
Sbjct: 197 VVRDLLRKYHVTPYDERTGKGVIRTVMVRRGYYS------------------HEVMVVL- 237
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLS 543
V N++ + + G A P + I D + + D L
Sbjct: 238 ---------VTNTKRLPMKEQIVDGIVAGVPEVKSIVQNINDKRTNKLLGDTDKTLW--- 285
Query: 544 IPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDT 603
G+ E IHD + + F ISP +F+QVN E+LY D A L
Sbjct: 286 -----GKDE---------IHDQLLGIDFAISPLSFYQVNPQQTERLYQTAIDSAGLDGSQ 331
Query: 604 LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
+ D CG GTI L +A V G+E+ +A+ DA NA+ NGIKN +FV KAED
Sbjct: 332 TVIDAYCGIGTISLAVARHAKQVYGVEIVPAAIEDAKHNAKRNGIKNAKFVVGKAED 388
>gi|407044626|gb|EKE42718.1| 23S rRNA (uracil-5-)-methyltransferase RumA protein [Entamoeba
nuttalli P19]
Length = 479
Score = 96.3 bits (238), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 88/354 (24%), Positives = 147/354 (41%), Gaps = 77/354 (21%)
Query: 310 MSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPL 369
M Y QLE KK + QM+ K ++ + +GI SP+
Sbjct: 109 MGYQHQLEMKKTQVLQMINKEIKDYQ-------------------------FDGIKASPI 143
Query: 370 VNGYRNKCEFSVGYSLQAKPT-VGFM-LGNFREGVTAVEEPVDCPNVSEIACKYASIFQE 427
GYRN+ +++ G P G + +F + VT + DC V + + ++
Sbjct: 144 NIGYRNRMDYTFGDGYIGGPLECGLHKMYHFNDVVTTI----DCRIVDKDFNELLLFTRD 199
Query: 428 FLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSA 487
+ + ++P +N+ K++G+ R L +R+ + +E+M SS
Sbjct: 200 YFRIKNIPHYNKIKHTGYLRNLLIRKAKKT------------------NEIMYCLITSSQ 241
Query: 488 TFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKA 547
D +N +L + G S + + D ++++ D L
Sbjct: 242 LNVD--LNELKNKLLELPLMGKLVS-----IIHCIFDD---ITDIVGYDKMNVLYG---- 287
Query: 548 DGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFD 607
ND I + + L F I+P +FFQ N+L AE LY D+ ++FD
Sbjct: 288 -------NDY----ITEELLGLHFKITPMSFFQTNSLGAEVLYQTVRDYITTIHCDIIFD 336
Query: 608 VCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661
+ CGTGTI L+ +IG+E+N A+ A NAE+N + NC F +A DV
Sbjct: 337 LYCGTGTITQLLSPICKKIIGVELNQDAIRAAKLNAELNKLTNCEF---RAADV 387
>gi|373469687|ref|ZP_09560861.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium oral taxon 082 str. F0431]
gi|371763984|gb|EHO52422.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium oral taxon 082 str. F0431]
Length = 464
Score = 96.3 bits (238), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 88/359 (24%), Positives = 148/359 (41%), Gaps = 76/359 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLP---CKLEG 363
L + YS +L K+N + LK+ IGG ++E
Sbjct: 90 LQSLDYSAELRLKQNKVENHLKR------------------------IGGFDLSNVEIEE 125
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
I+G YRNK +F G K G+ G ++ E DC E
Sbjct: 126 IIGMKDPIRYRNKSQFPFGRK-NGKNITGYFAGR----THSIVEFDDCIIGIEENKTVLK 180
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
+F+++ D+P ++ G R + +R+G + G+ + V ++
Sbjct: 181 AVLDFMEKYDIPAYDEESGKGVVRHVLIRKGFATGELM----------------VCIVIN 224
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLS 543
+S D +V E L A + L ++ I ++ +NV + + L
Sbjct: 225 ANSLPHSDKLV----ESLCSALGS---------DLKSVSININKKNTNVILGERTVTLYG 271
Query: 544 IPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDT 603
I D I +++F ISP +F+QVN + +KLYS ++A L
Sbjct: 272 ---------------NGYIEDYIGDVKFRISPQSFYQVNPVQTKKLYSKALEYAALTGKE 316
Query: 604 LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
++D+ CG GTI L LA V G+E+ +A+ +A NA+IN I+N +F KAE+++
Sbjct: 317 TVWDMYCGIGTISLFLAKSAKFVYGVEIVDAAIQNAIENAKINNIENVKFFVGKAEEII 375
>gi|423335144|ref|ZP_17312922.1| RNA methyltransferase [Lactobacillus reuteri ATCC 53608]
gi|337728665|emb|CCC03777.1| RNA methyltransferase [Lactobacillus reuteri ATCC 53608]
Length = 467
Score = 96.3 bits (238), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 106/390 (27%), Positives = 150/390 (38%), Gaps = 91/390 (23%)
Query: 298 KSARDVVTP------------LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLP 345
K +RD VTP L +++Y QL+ K+ I L+K P G
Sbjct: 73 KKSRDRVTPRDEYADIAGGFELENLAYQQQLKFKRQVIIDSLEKFQ-------PYG---- 121
Query: 346 EWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAV 405
R P + +P GYRNK +F + + K G N V
Sbjct: 122 -----YRNYDVRPT-----IAAPEEYGYRNKAQFQIR-MVNGKVAAGLYQPNSHTLVDME 170
Query: 406 EEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVEN 465
V P E + ++ +PV++ NSG + L VRE S G
Sbjct: 171 TCAVQMPRTMETVRAVTKMIEDL----QIPVYDEKHNSGIIKTLAVRESWSTG------- 219
Query: 466 LEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQD 525
EV L +SA ER+ K LP V+Q
Sbjct: 220 -----------EVQLTFITNSAKLPHK--RELLERIEK-----------ELPAVVSVMQ- 254
Query: 526 HQGVSNVAPADAPL----RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQV 581
NV P D PL +++ + D I +S+ L F +S +F Q+
Sbjct: 255 -----NVNPGDTPLVWGKKMIHLAGKDS------------ILESLMGLDFKLSARSFLQL 297
Query: 582 NTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHR 641
N E LY +L D L D G GTIGL+LA RV V G+E+ AV+DA+
Sbjct: 298 NPEQTEVLYEEASKALELDKDDTLIDAYAGIGTIGLSLASRVKAVRGMEIIPEAVADANE 357
Query: 642 NAEINGIKNCRFVCAKAEDVMGSLLKDYLN 671
NA++N I N ++ KAE+V+ K+ LN
Sbjct: 358 NAKLNNIANAKYEVGKAEEVLPRWQKEGLN 387
>gi|297545003|ref|YP_003677305.1| TrmA family RNA methyltransferase [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296842778|gb|ADH61294.1| RNA methyltransferase, TrmA family [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 450
Score = 96.3 bits (238), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 84/296 (28%), Positives = 127/296 (42%), Gaps = 48/296 (16%)
Query: 360 KLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFML-GNFREGVTAVEEPVDCPNVSEIA 418
K GI+ SP +GYRNK E++ G + +G G F E + + C V
Sbjct: 111 KFLGIVKSPKEHGYRNKMEYTFGKDKEGNAALGLHRKGRFYEVIMTDK----CNIVDGDF 166
Query: 419 CKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEV 478
K ++ E+ LP +++ + GF R L VR+ S
Sbjct: 167 IKALTLTFEYAINKRLPFYDKKTHEGFLRHLVVRKASK-------------------SRE 207
Query: 479 MLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAP 538
+L+ V++ + +F L + + S LV H + + A
Sbjct: 208 ILLNIVTTTQ-----LKHDFTELIEIYKNANFGSH-------LVGVLHTQNDSWSDAVVC 255
Query: 539 LRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWAD 598
RL + D EE I +L+F IS +FFQ N+ AEKLY ++A
Sbjct: 256 ERLEVLYGRDYLIEE------------ILDLKFKISAFSFFQTNSYGAEKLYETVREFAG 303
Query: 599 LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D ++FD+ GTGTIG+ +A VIGIE+ AV A NA++NG+KNC F+
Sbjct: 304 DVSDKIVFDLYSGTGTIGIIMAPMAKKVIGIELVEEAVMSARENAKLNGLKNCTFI 359
>gi|445389011|ref|ZP_21428125.1| TrmA family tRNA methyltransferase [Streptococcus thermophilus MTCC
5461]
gi|444750464|gb|ELW75271.1| TrmA family tRNA methyltransferase [Streptococcus thermophilus MTCC
5461]
Length = 453
Score = 96.3 bits (238), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 99/417 (23%), Positives = 165/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLA----GDGSGLKVKSARDVVTPLAHMSYSVQL 316
++A+PGE+ G G E + R + HM+Y+ QL
Sbjct: 33 DNALPGEVIRMRVLKLKKNIGFGKVEEYVTLSPSRNQDINATYLRSGIADFGHMTYTEQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K+ + L K G+S ++ LG YRNK
Sbjct: 93 KFKRKQVVDNLYKTA---------GIS--------------DVEVAETLGMETPYAYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF-QEFLQQSDLP 435
+ V ++ + GF N + + P++ + + +F ++ L++ DL
Sbjct: 130 AQVPVR-RVKGQLETGFYRKNSHDLI-----PIEDFLIQDKEIDKLIVFVRDLLRRYDLK 183
Query: 436 VWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVN 495
++ + +G R L VR G G+ M++ V++
Sbjct: 184 PYDEKEQTGLIRHLVVRRGHYSGQ-------------------MMLVFVTT--------K 216
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
+ R+ + A T + PS+ +IQ+ + A R L + N
Sbjct: 217 PKVFRIDQVIAK-ITEAFPSI---VSIIQNINDKNTNAIFGKEFRTLYGQDTITDRMLGN 272
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
D + IS +F+QVNT AEKLY + D++DL D+++ D G GTI
Sbjct: 273 D--------------YEISAQSFYQVNTEMAEKLYQIAIDFSDLNSDSIVIDAYSGIGTI 318
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL+ A +V V G+E+ +AV DA +NAE NGI N +V AE+ M +D + P
Sbjct: 319 GLSFAKQVKKVYGVEVIETAVEDAKKNAERNGITNAHYVANSAENAMAKWSQDGIKP 375
>gi|167748614|ref|ZP_02420741.1| hypothetical protein ANACAC_03387 [Anaerostipes caccae DSM 14662]
gi|167651928|gb|EDR96057.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerostipes caccae
DSM 14662]
Length = 543
Score = 96.3 bits (238), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 81/305 (26%), Positives = 126/305 (41%), Gaps = 47/305 (15%)
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
EGI GSP YRNK EFS G ++ P +G N + + DC V
Sbjct: 113 EGIKGSPKWWEYRNKMEFSFGDEVKGGPLALGMHKKNTFHDIVNI---TDCKIVDNDYNL 169
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
S + +S +++ + G+ R L +R + G +L +NI
Sbjct: 170 LVSCVLNYFSESGCDFYHKMSHEGYLRHLVIRRSEANG------DLLINI---------- 213
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
V S+ + K A + S + ++ + +++V AD R
Sbjct: 214 ------------VTTSQADVDMKPLAEEMLSLPLSGSIRGILHTVNDSLADVVQAD---R 258
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
+ +I D ++ I L+F ISP +FFQ N+L AE LY ++
Sbjct: 259 METIYGED------------FFYEEILGLKFKISPFSFFQTNSLGAEVLYETAREYVGET 306
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
D ++FD+ GTGTI LA V+G+E+ AV A NA +NG+ NC F+
Sbjct: 307 KDKVIFDLYSGTGTIAQMLAPVAKKVVGVEIVGEAVEAARENAGLNGLDNCEFIAGDVLK 366
Query: 661 VMGSL 665
V+ L
Sbjct: 367 VIDEL 371
>gi|348027261|ref|YP_004767066.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera elsdenii
DSM 20460]
gi|341823315|emb|CCC74239.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Megasphaera elsdenii
DSM 20460]
Length = 461
Score = 96.3 bits (238), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 97/368 (26%), Positives = 150/368 (40%), Gaps = 76/368 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H+SY +L+ K+ + L E I + I LP LG
Sbjct: 90 LQHLSYEGELKEKRQQVRDAL------------------ERIGHLQHIDVLPT-----LG 126
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
+ YRNK +F V + + K +G F V + DC E ++ +
Sbjct: 127 ANTPWHYRNKMQFPVAAAGKGK----VAIGCFAAATHEVIDVTDCAIQKEGNNAIVAVVR 182
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
++++ +P ++ +G R + R G V+ E+M V
Sbjct: 183 QWMKDFKIPAYDEDARTGIVRHIMGRVG------------------VHTGEIM----VCL 220
Query: 487 ATFDDAV--VNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSI 544
T D V + +RL + LT++V ++ +NV
Sbjct: 221 ITACDMVPHMKDLVQRLRRDIPG----------LTSVVQNVNKRHTNVILG--------- 261
Query: 545 PKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTL 604
P+ + IHDSI L F IS +FFQVN+ A++LY D+ADL
Sbjct: 262 ------PKTKTVYGKGTIHDSIGPLTFHISAQSFFQVNSEQAQRLYETALDFADLKGGET 315
Query: 605 LFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664
+ DV CGTGTI L LA + V GIE+ A A+ DA RNA+ N + N +F+ A +
Sbjct: 316 VADVYCGTGTITLFLAQKAKQVYGIEIVAPAIRDAVRNAKDNHVGNAQFILGDAIYKLPE 375
Query: 665 LLKDYLNP 672
L+K+ + P
Sbjct: 376 LIKNGIRP 383
>gi|55820731|ref|YP_139173.1| TrmA family tRNA methyltransferase [Streptococcus thermophilus LMG
18311]
gi|55736716|gb|AAV60358.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus LMG
18311]
Length = 453
Score = 95.9 bits (237), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 99/417 (23%), Positives = 165/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLA----GDGSGLKVKSARDVVTPLAHMSYSVQL 316
++A+PGE+ G G E + R + HM+Y+ QL
Sbjct: 33 DNALPGEVIRMRVLKLKKNIGFGKVEEYVTLSPSRNQDINATYLRSGIADFGHMTYTEQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K+ + L K G+S ++ LG YRNK
Sbjct: 93 KFKRKQVVDNLYKTA---------GIS--------------DVEVAETLGMETPYAYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF-QEFLQQSDLP 435
+ V ++ + GF N + + P++ + + +F ++ L++ DL
Sbjct: 130 AQVPVR-RVKGQLETGFYRKNSHDLI-----PIEDFLIQDKEIDKLIVFVRDLLRRYDLK 183
Query: 436 VWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVN 495
++ + +G R L VR G G+ M++ V++
Sbjct: 184 PYDEKEQTGLIRHLVVRRGHYSGQ-------------------MMLVFVTT--------K 216
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
+ R+ + A + + P +IQ+ + A R L G+
Sbjct: 217 PKVFRIDQVIAK----ITEAFPNIVSIIQNINDKNTNAIFGKEFRTLY-----GQDT--- 264
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
I DS+ + IS +F+QVNT AEKLY D++DL D+++ D G GTI
Sbjct: 265 ------ITDSMLGNDYEISAQSFYQVNTEMAEKLYQTAIDFSDLNSDSIVIDAYSGIGTI 318
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL+ A +V V G+E+ +AV DA +NAE NGI N +V AE+ M +D + P
Sbjct: 319 GLSFAKQVKEVYGVEVIETAVEDAKKNAERNGITNAHYVANSAENAMAKWSQDGIKP 375
>gi|55822623|ref|YP_141064.1| TrmA family tRNA methyltransferase [Streptococcus thermophilus
CNRZ1066]
gi|55738608|gb|AAV62249.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus
CNRZ1066]
Length = 453
Score = 95.9 bits (237), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 101/417 (24%), Positives = 167/417 (40%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLA----GDGSGLKVKSARDVVTPLAHMSYSVQL 316
++A+PGE+ G G E + R + HM+Y+ QL
Sbjct: 33 DNALPGEVIRMRVLKLKKNIGFGKVEEYVTLSPSRNQDINATYLRSGIADFGHMTYTEQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K+ + L K G+S ++ LG YRNK
Sbjct: 93 KFKRKQVVDNLYKTA---------GIS--------------DVEVAETLGMETPYAYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF-QEFLQQSDLP 435
+ V ++ + GF N + + P++ + + +F ++ L++ DL
Sbjct: 130 AQVPVR-RVKGQLETGFYRKNSHDLI-----PIEDFLIQDKEIDKLIVFVRDLLRRYDLK 183
Query: 436 VWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVN 495
++ + +G R L VR G G+ M++ V++
Sbjct: 184 PYDEKEQTGLIRHLVVRRGHYSGQ-------------------MMLVFVTT--------K 216
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
+ R+ + A T + PS+ +IQ+ + A R L G+
Sbjct: 217 PKVFRIDQVIAK-ITEAFPSI---VSIIQNINDKNTNAIFGKEFRTLY-----GQDT--- 264
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
I DS+ + IS +F+QVNT AEKLY D++DL D+++ D G GTI
Sbjct: 265 ------ITDSMLGNDYEISAQSFYQVNTEMAEKLYQTAIDFSDLNSDSIVIDAYSGIGTI 318
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL+ A +V V G+E+ +AV DA +NAE NGI N +V AE+ M +D + P
Sbjct: 319 GLSFAKQVREVYGVEVIETAVEDAKKNAERNGITNAHYVADSAENAMAKWSQDGIKP 375
>gi|210613367|ref|ZP_03289687.1| hypothetical protein CLONEX_01894 [Clostridium nexile DSM 1787]
gi|210151209|gb|EEA82217.1| hypothetical protein CLONEX_01894 [Clostridium nexile DSM 1787]
Length = 464
Score = 95.9 bits (237), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 79/336 (23%), Positives = 136/336 (40%), Gaps = 67/336 (19%)
Query: 373 YRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQS 432
YRNK +F G Q GF G + + E + EI + +F+
Sbjct: 129 YRNKAQFPFGTDKQGHIVTGFYAGRTHQIIPNTECALGVKQNREIL----EMIVDFMNIH 184
Query: 433 DLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDA 492
+ ++ G R + +R G G E+M+ ++ F +
Sbjct: 185 HITTYDETTGEGLLRHVLIRYGFRTG------------------EIMVCLIINGDNFPKS 226
Query: 493 VVNSEFERLAKAFAAGATASSPSLP-LTALVIQDHQGVSNVAPADAPLRLLSIPKADGEP 551
E+L +P +T++ + ++ +NV L
Sbjct: 227 ------EKLVDNLR--------EIPGMTSITLNVNRERTNVILGREIKVLWG-------- 264
Query: 552 EESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCG 611
+A I D I N+++ ISP +F+QVN + E LY ++A L + ++D+ CG
Sbjct: 265 -------QAYITDYIGNVKYQISPLSFYQVNPVQTENLYGQALEYAGLHGNETVWDLYCG 317
Query: 612 TGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLN 671
GTI L LA + V G+E+ A+ DA RNA +NGI+N +F K+E+V+ ++Y
Sbjct: 318 IGTISLFLAQKAKQVYGVEIIPQAIEDAKRNAALNGIENAQFFVGKSEEVLPQYYENY-- 375
Query: 672 PLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGC 707
EH E + ++ + + P +GC
Sbjct: 376 ----AKEHGGEKAYADVIVVD---------PPRKGC 398
>gi|408401934|ref|YP_006859898.1| hypothetical protein GGS_1263 [Streptococcus dysgalactiae subsp.
equisimilis RE378]
gi|407968163|dbj|BAM61401.1| hypothetical protein GGS_1263 [Streptococcus dysgalactiae subsp.
equisimilis RE378]
Length = 453
Score = 95.9 bits (237), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 102/418 (24%), Positives = 164/418 (39%), Gaps = 81/418 (19%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLA----GDGSGLKVKSARDVVTPLAHMSYSVQL 316
++A+PGE+ + G G E + V R + H++Y QL
Sbjct: 33 DNALPGEIIDMRVLKVNKNSGFGKVEAYQKLSPARNQAIDVTYLRTGIADFGHLAYEDQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K+ + L K+ A N V++ ++ IG + +PL YRNK
Sbjct: 93 RFKQKQVQDNLYKI------AGINDVTV------NQTIG---------MDNPL--AYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF + + V + + + + + +E L++ D+
Sbjct: 130 AQVPVR-RVNGQLETGFFRKHSHDLVPISDYYIQDKEIDRLI----NFTRELLRRFDVKP 184
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
++ + +G R + VR G G E+ML+ +
Sbjct: 185 YDEKEQTGLIRHIVVRRGHYSG------------------EMMLVLVTTRP--------- 217
Query: 497 EFERLAKAFAAGATASS--PSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEES 554
K F S S P +IQ N+ + +I D +
Sbjct: 218 ------KVFRVDQVISKIVESFPAVVSIIQ------NINDKNTN----AIFGKDFKTLYG 261
Query: 555 NDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGT 614
D I DS+ F IS +F+QVNT+ AEKLY ++DL D ++ D G GT
Sbjct: 262 KDT----ITDSMLGNDFAISAQSFYQVNTVMAEKLYQTAIAFSDLSEDDVVIDAYSGIGT 317
Query: 615 IGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
IGL+ A V V G+E+ +AV DA +NA NGI N FV AE+ M + K+ + P
Sbjct: 318 IGLSFAKTVKAVYGVEVIEAAVKDAQQNAARNGITNVHFVADTAENAMATWAKEDIKP 375
>gi|256763335|ref|ZP_05503915.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T3]
gi|256963815|ref|ZP_05567986.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis
HIP11704]
gi|307271762|ref|ZP_07553033.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0855]
gi|256684586|gb|EEU24281.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T3]
gi|256954311|gb|EEU70943.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis
HIP11704]
gi|306511640|gb|EFM80639.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0855]
Length = 456
Score = 95.9 bits (237), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 97/389 (24%), Positives = 157/389 (40%), Gaps = 87/389 (22%)
Query: 298 KSARDVVTP------------LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLP 345
K+A+D V P L H++Y QL+ KK+ + Q L K
Sbjct: 66 KAAKDRVVPPCPVYETCGGCQLQHLAYKAQLDFKKDLLKQALNKF--------------- 110
Query: 346 EWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAV 405
+ + +L +G YRNK +F + + + G + + V
Sbjct: 111 ------KPVNYQNYELRKTIGMENPWNYRNKAQFQLR-QIDGQVEAGLYQADSHQLV--- 160
Query: 406 EEPVD-CPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVE 464
P+D C K + + L + LP+++ KNSG +R L VR G G
Sbjct: 161 --PIDNCLVQQPATTKVMNTLVDLLNKFQLPIYDERKNSGIFRTLMVRVGIQTG------ 212
Query: 465 NLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQ 524
EV ++ S F + E++ +A + LP ++Q
Sbjct: 213 ------------EVQVVFITQSQKF------PQKEKMVRAI-------NEQLPEVVSIMQ 247
Query: 525 DHQGV-SNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNT 583
+ Q +++ D L L +ES I + I+++ F +SP AFFQ+N
Sbjct: 248 NVQNKKTSLVMGDDTLHLWG--------KES-------IEEHINDVVFDLSPRAFFQLNP 292
Query: 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNA 643
E LY+ G DL P+ + D CG GTIGL+LA + V G++ +A+ DA NA
Sbjct: 293 EQTEVLYNEGIKALDLQPNETVVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNA 352
Query: 644 EINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
+ G+ N + AED++ K+ P
Sbjct: 353 KRLGVTNTHYAVGTAEDLLPKWFKEGFKP 381
>gi|392948241|ref|ZP_10313852.1| 23S rRNA methyltransferase, TrmA family [Lactobacillus pentosus
KCA1]
gi|392436447|gb|EIW14360.1| 23S rRNA methyltransferase, TrmA family [Lactobacillus pentosus
KCA1]
Length = 457
Score = 95.9 bits (237), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 93/371 (25%), Positives = 151/371 (40%), Gaps = 78/371 (21%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ PL H+ YS QL+ K++ +A++ K+ + + P IG
Sbjct: 85 IAPLQHLEYSEQLKFKQHQVAELFAKVHMDDVEVLPT-------------IG-------- 123
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
+ +P YRNK + V +Q + T GF N + + + + P + K
Sbjct: 124 -MDNP--TQYRNKAQVPVR-QVQGQLTTGFYKKNSHQLMPIEDYYIQDPEID----KAIV 175
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
+ ++ L++ ++ F +SG R + VR G + + V+++ +
Sbjct: 176 VVRDILRKYHEAAYDEFHHSGTIRTIMVRRGYYSHEMM----------------VVIVTR 219
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLS 543
D VV E + +LP VIQ NV + L
Sbjct: 220 TKHLPMAD-VVTQEIQ--------------AALPEVVSVIQ------NVNSKKTNVILGP 258
Query: 544 IPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGP 601
+ N+V+ + I D + L F IS +F+QVN EKLY L D A L
Sbjct: 259 V----------NNVLAGKSTIDDQLLGLTFAISAQSFYQVNPQQTEKLYQLAIDRAGLTG 308
Query: 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661
+ + D G GTI LT+A V G+E+ +A+ +A +NA+ NGI N +FV AE
Sbjct: 309 NETVIDAYSGIGTISLTMAQHAKQVYGVEIVPAAIDNARQNADENGITNAKFVLDSAEKA 368
Query: 662 MGSLLKDYLNP 672
M D + P
Sbjct: 369 MAKWQADGIKP 379
>gi|373106158|ref|ZP_09520461.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Stomatobaculum longum]
gi|371652533|gb|EHO17941.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Stomatobaculum longum]
Length = 397
Score = 95.9 bits (237), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 89/329 (27%), Positives = 135/329 (41%), Gaps = 56/329 (17%)
Query: 337 ACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLG 396
A P L + ++ ++ G CK+E I+ +P YRNK S G+ K VG
Sbjct: 35 ALPYAEQLRKKQREAEKLLGKFCKVEPIVAAPEPLHYRNKVTASFGFQ-NKKLVVGVYER 93
Query: 397 NFREGVTAVEEPVD-CPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGR 455
+ V P+D C + A + I ++ L ++ G R + VR
Sbjct: 94 DSHRVV-----PIDHCRIQNRTADRIIHIIRDLAVSFRLKAYDEDLRIGTLRHVLVRTSE 148
Query: 456 SPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPS 515
+ G ++M++ + F + K F TA
Sbjct: 149 ATG------------------QIMVVIVTGTPIFPGS----------KNFV---TALRKQ 177
Query: 516 LPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEAR--IHDSISNLRFCI 573
P VIQ N+ P + L E + V+ + I D + L F +
Sbjct: 178 CPEITTVIQ------NINPQKTSMIL----------GERDKVLYGKGYIEDELLGLTFRL 221
Query: 574 SPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNA 633
SP +F+QVN EKLY + +A L P+ + D CG GTIG+ + G VIG+E+N
Sbjct: 222 SPASFYQVNAKMTEKLYEIALSFAQLTPNDTVLDAYCGVGTIGMAASRSAGQVIGVELNK 281
Query: 634 SAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
+AV DA NA+ NGI+N RF A D +
Sbjct: 282 AAVRDAIANAKRNGIENIRFFADDASDFL 310
>gi|422724282|ref|ZP_16780761.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX2137]
gi|424675593|ref|ZP_18112492.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
599]
gi|315025773|gb|EFT37705.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX2137]
gi|402350858|gb|EJU85755.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
599]
Length = 504
Score = 95.9 bits (237), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 121/501 (24%), Positives = 200/501 (39%), Gaps = 103/501 (20%)
Query: 178 HSDNLKKFLADHGILYKSAKKKKGMTVGF-VKFESVEQLKNAVEELEGISIGNKTLKVAN 236
H ++L FL + + KKK+ + + VK KN V E+E I + ++ L VA
Sbjct: 23 HENSLLLFLGIFIRMSEVYKKKERLMKNYPVK-------KNDVIEVEIIDLTHEGLGVAK 75
Query: 237 VVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGND-EGLAGDGSGL 295
V P+ + E+A+PGE E G G G L +
Sbjct: 76 VD--------HYPLFI--------ENALPGEKLEIKVLKTGKSFGYGKVLTVLKSSEQRV 119
Query: 296 KVKS---ARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSR 352
VK + ++PL H++Y QL K + +++++ + LPE
Sbjct: 120 PVKDENFTKVGISPLQHLAYGAQLSFKTQQVENVMQRVAK-----------LPE------ 162
Query: 353 EIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCP 412
+ LP I+G YRNK + V + + GF N + + + P
Sbjct: 163 -VPVLP-----IIGMNDPWHYRNKAQIPVR-KIDNQLQTGFFRKNSHDLIPMEHFYIQDP 215
Query: 413 NVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISE 472
+ K I +++ + +N N+G R + VR G G+ +
Sbjct: 216 EIDAAIVKIRDIMRKY----SVKPYNESDNTGNLRHIVVRRGYHTGEMM----------- 260
Query: 473 VNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSN 531
V+LI + +V E ++P ++Q+ + +N
Sbjct: 261 -----VVLITRTPKLFPISKIVPDILE---------------AIPEVVSIVQNVNPKRTN 300
Query: 532 VAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYS 591
V D + L +I D+I +L+F IS +F+QVN E +Y
Sbjct: 301 VIFGDETILLHG---------------SKKITDTIFDLKFEISARSFYQVNPQQTEVMYQ 345
Query: 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNC 651
++A L + ++ D CG GTIGLTLA V GIE+ AV DA NA++N I+N
Sbjct: 346 KVKEYAALTGNEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENA 405
Query: 652 RFVCAKAEDVMGSLLKDYLNP 672
F AE+++ L+++ L P
Sbjct: 406 TFTAGLAEELLPKLVENGLQP 426
>gi|15893813|ref|NP_347162.1| SAM-dependent methyltransferase [Clostridium acetobutylicum ATCC
824]
gi|337735737|ref|YP_004635184.1| SAM-dependent methyltransferase [Clostridium acetobutylicum DSM
1731]
gi|50401652|sp|Q97LN4.1|Y523_CLOAB RecName: Full=Uncharacterized RNA methyltransferase CA_C0523
gi|15023386|gb|AAK78502.1|AE007567_4 SAM-dependent methyltransferase related to
tRNA(uracyl-5-)-methyltransferase (trmA family)
[Clostridium acetobutylicum ATCC 824]
gi|336290152|gb|AEI31286.1| SAM-dependent methyltransferase [Clostridium acetobutylicum DSM
1731]
Length = 460
Score = 95.9 bits (237), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 88/370 (23%), Positives = 149/370 (40%), Gaps = 79/370 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTR----NARKACPNGVSLPEWIMKSREIGGLPCKLE 362
L H+ Y+ QLE KKN + + LK++ + + R G+ P +
Sbjct: 88 LQHLKYTEQLEFKKNKVVECLKRIGKLDLSSVRINETIGMEDPYF--------------- 132
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYA 422
YRNK + VG + + +GF +RE + E C + A +
Sbjct: 133 ----------YRNKVQLPVGET-AGEAKIGF----YRERSHEIIEVDKCFIQDDSANEII 177
Query: 423 SIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIA 482
+ + ++++ ++ +N + G R + +R+ G ++ML+
Sbjct: 178 LLIKRWIKEFNIEGYNEYSGKGTLRHIMIRKAFKTG------------------QIMLVL 219
Query: 483 QVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLL 542
V N+E K T + I + + +NV + L
Sbjct: 220 ----------VTNTENVPHKKELIHMITTEIQGIKGIIQNINNKK--TNVILGQREITLW 267
Query: 543 SIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPD 602
E+ I D I +F IS +FFQVN + EKLYS +A L
Sbjct: 268 G---------------ESTIEDYIGEFKFNISSKSFFQVNPIQTEKLYSAALKYAGLTGK 312
Query: 603 TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
++FD CGTGTI L L+ V G+E+ A+ +A NA+ NGI+N F+ K+E+ +
Sbjct: 313 EVVFDAYCGTGTISLFLSQNAKKVYGVEIIPEAIENAKINAKQNGIENTEFIVGKSEEEI 372
Query: 663 GSLLKDYLNP 672
L++ + P
Sbjct: 373 PKLIEKGIAP 382
>gi|15675282|ref|NP_269456.1| RNA methyltransferase [Streptococcus pyogenes SF370]
gi|50401663|sp|Q99Z86.1|Y1346_STRP1 RecName: Full=Uncharacterized RNA methyltransferase
SPy_1346/M5005_Spy1098
gi|13622457|gb|AAK34177.1| putative RNA methyltransferase [Streptococcus pyogenes M1 GAS]
gi|94544172|gb|ABF34220.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes
MGAS10270]
Length = 462
Score = 95.9 bits (237), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 98/417 (23%), Positives = 165/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGL----AGDGSGLKVKSARDVVTPLAHMSYSVQL 316
++A+P E+ + G G E + + + + R + L H++Y QL
Sbjct: 44 DNALPEEVIDMRVLKVNKNSGFGKVEAYHYLSSARNADVNLTYLRTGIADLGHLTYEDQL 103
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
KK + L K+ G+S +E +G YRNK
Sbjct: 104 TFKKKQVQDSLYKIA---------GIS--------------DVTVESTIGMTEPLAYRNK 140
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF + + + + + + + + ++ L++ D+
Sbjct: 141 AQVPVR-RVNGQLETGFFRKHSHDLIPISDYYIQDKEIDRLI----NFTRDLLRRFDIKP 195
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS-ATFDDAVVN 495
++ + +G R + VR G G E+ML+ + F V+
Sbjct: 196 YDETEQTGLLRNIVVRRGHYSG------------------EMMLVLVTTRPKVFR---VD 234
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
E++ +AF P +IQ N+ + +I D +
Sbjct: 235 QVIEKIVEAF-----------PAVVSIIQ------NINDKNTN----AIFGKDFKTLYGK 273
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
D I DS+ + IS +F+QVNT+ AEKLY ++DL D ++ D G GTI
Sbjct: 274 DT----ITDSMLGNNYAISAQSFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTI 329
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL+ A V V G+E+ +AV DA +NA +NGI N FV AE M + KD + P
Sbjct: 330 GLSFAKTVKAVYGVEVIEAAVRDAQQNAALNGITNAYFVADTAEHAMATWAKDGIKP 386
>gi|217967096|ref|YP_002352602.1| TrmA family RNA methyltransferase [Dictyoglomus turgidum DSM 6724]
gi|217336195|gb|ACK41988.1| RNA methyltransferase, TrmA family [Dictyoglomus turgidum DSM 6724]
Length = 448
Score = 95.9 bits (237), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 87/372 (23%), Positives = 151/372 (40%), Gaps = 96/372 (25%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H++Y QLE K+ + K++ + ++ P ++G
Sbjct: 83 LMHVNYGYQLELKRMIVEDAFKRIGKIEKEISP------------------------VIG 118
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
YRNK + VG + K +GF ++ + + C E A K +
Sbjct: 119 MENPYRYRNKAKIPVG-KRRGKVVLGF----YKPNTHHIVDISGCIVQHEDADKVIETTK 173
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
E +++ + V+N +++G R + VR + + +++ VS
Sbjct: 174 EAIKKFHIEVYNELQHTGLLRFVVVRRSFA-------------------FDDLMVVLVSK 214
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
D+A + F R L+ L
Sbjct: 215 GMIDNAKKIARFYRYR------------------------------------LKNLKSFY 238
Query: 547 ADGEPEESNDVV---------EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWA 597
+ P+ +N++ E I D I F ISP +FFQ+N++ EKLY+ ++
Sbjct: 239 ININPKRTNEIFGEESRLIWGEEVIRDKIGEFIFEISPVSFFQINSIQTEKLYNKALEY- 297
Query: 598 DLGPDT-LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCA 656
L P++ L+FD CG GTI L L+ + V GIE+ SA+ DA +NA IN +KN F+
Sbjct: 298 -LSPNSKLVFDAYCGIGTISLFLSKKAEKVYGIEVERSAIEDAWKNARINKVKNVEFIWG 356
Query: 657 KAEDVMGSLLKD 668
++E+V+ L++D
Sbjct: 357 RSEEVIPRLIED 368
>gi|71903755|ref|YP_280558.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes
MGAS6180]
gi|71802850|gb|AAX72203.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes
MGAS6180]
Length = 555
Score = 95.9 bits (237), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 98/417 (23%), Positives = 163/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLA----GDGSGLKVKSARDVVTPLAHMSYSVQL 316
++A+P E+ + G G E + + + R + L H++Y QL
Sbjct: 44 DNALPEEVIDMRVLKVNKNSGFGKVEAYHYLSPARNADVNLTYLRTGIADLGHLTYEDQL 103
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
KK + L K+ G+S +E +G YRNK
Sbjct: 104 TFKKKQVQDSLYKIA---------GIS--------------DVTVESTIGMTEPLAYRNK 140
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF + + + + + + + + ++ L++ D+
Sbjct: 141 AQVPVR-RVNGQLETGFFRKHSHDLIPISDYYIQDKEIDRLI----NFTRDLLRRFDIKP 195
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS-ATFDDAVVN 495
++ + +G R + VR G G E+ML+ + F V+
Sbjct: 196 YDETEQTGLLRNIVVRRGHYSG------------------EMMLVLVTTRPKVFR---VD 234
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
E++ +AF P +IQ N+ + +I D +
Sbjct: 235 QVIEKIVEAF-----------PAVVSIIQ------NINDKNTN----AIFGKDFKTLYGK 273
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
D I DS+ + IS +F+QVNT+ AEKLY ++DL D ++ D G GTI
Sbjct: 274 DT----ITDSMLGNNYAISAQSFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTI 329
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL+ A V V G+E+ +AV DA NA +NGI N FV AE M + KD + P
Sbjct: 330 GLSFAKTVKAVYGVEVIEAAVRDAQHNAALNGITNAYFVADTAEHAMATWAKDGIKP 386
>gi|67469205|ref|XP_650594.1| RNA methyltransferase [Entamoeba histolytica HM-1:IMSS]
gi|56467236|gb|EAL45208.1| RNA methyltransferase, putative [Entamoeba histolytica HM-1:IMSS]
gi|449704302|gb|EMD44571.1| RNA methyltransferase, putative [Entamoeba histolytica KU27]
Length = 479
Score = 95.9 bits (237), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 88/354 (24%), Positives = 147/354 (41%), Gaps = 77/354 (21%)
Query: 310 MSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPL 369
M Y QLE KK + QM+ K ++ + +GI SP+
Sbjct: 109 MGYQHQLEMKKTQVLQMINKEIKDY-------------------------QFDGIKASPI 143
Query: 370 VNGYRNKCEFSVGYSLQAKPT-VGFM-LGNFREGVTAVEEPVDCPNVSEIACKYASIFQE 427
GYRN+ +++ G P G + +F + VT + DC V + + ++
Sbjct: 144 NIGYRNRMDYTFGDGYIGGPLECGLHKMYHFNDVVTTI----DCRIVDKDFNELLLFTRD 199
Query: 428 FLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSA 487
+ + ++P +N+ K++G+ R L +R+ + +E+M SS
Sbjct: 200 YFRIKNIPHYNKIKHTGYLRNLLIRKAKKT------------------NEIMYCLITSSQ 241
Query: 488 TFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKA 547
D +N +L + G S + + D ++++ D L
Sbjct: 242 LNVD--LNELKNKLLELPLMGKLVS-----IIHCIFDD---ITDIVGYDKMNVLYG---- 287
Query: 548 DGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFD 607
ND I + + L F I+P +FFQ N+L AE LY D+ ++FD
Sbjct: 288 -------NDY----ITEELLGLHFKITPMSFFQTNSLGAEVLYQTVRDYITTIRCDIIFD 336
Query: 608 VCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661
+ CGTGTI L+ +IG+E+N A+ A NAE+N + NC F +A DV
Sbjct: 337 LYCGTGTITQLLSPICKKIIGVELNQDAIRAAKLNAELNKLTNCEF---RAADV 387
>gi|293365360|ref|ZP_06612077.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
ATCC 35037]
gi|291316810|gb|EFE57246.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
ATCC 35037]
Length = 451
Score = 95.9 bits (237), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 97/381 (25%), Positives = 154/381 (40%), Gaps = 79/381 (20%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKL--TRNARKACPNGVSLPEWIMKSR 352
L + R + L H++Y QL+ K + L K+ R+ A G+ P +K R
Sbjct: 71 LDLAYLRSGIADLGHLAYPEQLKFKTKQVKDSLYKIAGIRDVEVAETLGMEHP---VKYR 127
Query: 353 EIGGLPCK-LEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDC 411
+P + + G+L + GF N + + + +
Sbjct: 128 NKAQVPVRRVNGVLET------------------------GFFRKNSHDLMPLEDFFIQD 163
Query: 412 PNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNIS 471
P + E+ ++ L++ DL ++ + SG R L VR G G+ +
Sbjct: 164 PMIDEVVVA----LRDLLRRYDLKPYDEKEQSGLIRNLVVRRGHYSGQIM---------- 209
Query: 472 EVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSN 531
+++ F V+ E+L K F P V+Q+ +
Sbjct: 210 -------VILVTTRPKVFR---VDQLIEQLIKQF-----------PEIVSVVQNINDQNT 248
Query: 532 VAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYS 591
A R L G+ I D + F IS AF+QVNT AEKLY
Sbjct: 249 NAIFGKDWRTLY-----GQD---------YITDQMLGNDFQISGPAFYQVNTEMAEKLYQ 294
Query: 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNC 651
D+A+L D ++ D G GTIGL++A V V G+E+ AV ++ +NA INGI N
Sbjct: 295 TAIDFAELKGDDVVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKNASINGITNA 354
Query: 652 RFVCAKAEDVMGSLLKDYLNP 672
+VC AE+ M + LK+ + P
Sbjct: 355 HYVCDTAENAMKNWLKEGIQP 375
>gi|365134651|ref|ZP_09343366.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Subdoligranulum sp.
4_3_54A2FAA]
gi|363613610|gb|EHL65119.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Subdoligranulum sp.
4_3_54A2FAA]
Length = 454
Score = 95.9 bits (237), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 90/367 (24%), Positives = 138/367 (37%), Gaps = 79/367 (21%)
Query: 309 HMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSP 368
H+SY +L K+ +A L R IGGL + IL SP
Sbjct: 86 HLSYEAELAAKQGFVADAL------------------------RRIGGLDVPVRDILPSP 121
Query: 369 LVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPV---DCPNVSEIACKYASIF 425
YRNK ++ + + GF + P+ DC + + A+
Sbjct: 122 QTERYRNKVQYPLFLAGDGSVQAGFY-------ASRSHRPLPCGDCLLQPGLLNRIAATL 174
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
L Q + V++ + G R + +R + G L V L
Sbjct: 175 CALLTQYHISVYDEQAHRGLARHIYLRHAVTNGSVL----------------VCL----- 213
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
V N A+ A + P + L + H+ +NV + L
Sbjct: 214 -------VCNGRSLPHAQDICAALVKAHPEVESVVLNVNTHK--TNVITGKECITLYG-- 262
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
+HD++ + + P +F+QVNT A +LY + D+A GP+ L
Sbjct: 263 -------------PGVLHDTMRGVPVALGPLSFYQVNTEGANRLYGVAADFAAPGPEDTL 309
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
D+ CG GTIGL++A G +IG+E+ AV A RNA G+++ F CA A L
Sbjct: 310 LDLYCGAGTIGLSMAEHCGRLIGVEIVPEAVESARRNAAAMGVEHAEFFCADAGTAAQKL 369
Query: 666 LKDYLNP 672
D L P
Sbjct: 370 AADGLLP 376
>gi|431412486|ref|ZP_19511921.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1630]
gi|431759374|ref|ZP_19547988.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E3346]
gi|430589441|gb|ELB27569.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1630]
gi|430626174|gb|ELB62760.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E3346]
Length = 457
Score = 95.9 bits (237), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 109/414 (26%), Positives = 165/414 (39%), Gaps = 93/414 (22%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGL---------AGDGSGLKVKSARDVVTPLAHMS 311
E+A+PGE E G++ G G E + + L+ +A PLAH+
Sbjct: 38 ENALPGEEVEILVVKAGNKFGYGKVETFITQSPDRQPVENNALLRTGNA-----PLAHLK 92
Query: 312 YSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVN 371
Y QL K+ + ++ K I K E+ LP +G
Sbjct: 93 YEQQLVFKQKQVEHVMAK------------------IAKMPEVPVLPT-----VGMAEPF 129
Query: 372 GYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQ 431
GYRNK + V + + GF N + V + + P + + A K + ++ LQ+
Sbjct: 130 GYRNKAQIPVR-RIDGQLATGFYKKNSHDLVPIEDFYIQDPVIDQ-AIK---VVRDILQR 184
Query: 432 SDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDD 491
+ +N KN G R + +R G + S M++ V+
Sbjct: 185 FQVRGYNEEKNEGQLRHIIIRRG-------------------HYSHEMMVVLVT------ 219
Query: 492 AVVNSEFERLAKAFAAG--ATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLLSIPKAD 548
R K F + A A LP VIQ+ ++ +NV D L
Sbjct: 220 --------RKEKFFKSKEIAEAIHEELPEVVSVIQNINEEKTNVILGDKEKVLYG----- 266
Query: 549 GEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDV 608
D +E D + + IS +F+QVNT AE LY ++A+L ++ D
Sbjct: 267 ------RDYIE----DQLLGKTYRISAKSFYQVNTQQAEYLYQTAIEFAELDKKDIVIDA 316
Query: 609 CCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
G GTIGL+LA RV V G+E+ A+ DA NA N I+N + KAE VM
Sbjct: 317 YSGIGTIGLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENVHYEVGKAEKVM 370
>gi|150019658|ref|YP_001311912.1| RNA methyltransferase [Clostridium beijerinckii NCIMB 8052]
gi|149906123|gb|ABR36956.1| RNA methyltransferase, TrmA family [Clostridium beijerinckii NCIMB
8052]
Length = 459
Score = 95.9 bits (237), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 67/111 (60%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I D I +F ISP +FFQ+N + E LY+ ++ADL D ++FD CG GTI L L+
Sbjct: 268 ISDYIGKYKFNISPLSFFQINPIQTEVLYNKALEYADLSGDEIVFDAYCGAGTITLFLSQ 327
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
V G+E+ A+ +A NAEINGI N F K+E+V+ L+K+ + P
Sbjct: 328 NARKVYGVEIVEQAIDNAIDNAEINGIDNSEFYVGKSEEVIPELIKNGIKP 378
>gi|363898141|ref|ZP_09324676.1| hypothetical protein HMPREF9624_01238 [Oribacterium sp. ACB7]
gi|361956508|gb|EHL09823.1| hypothetical protein HMPREF9624_01238 [Oribacterium sp. ACB7]
Length = 435
Score = 95.9 bits (237), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 106/436 (24%), Positives = 176/436 (40%), Gaps = 96/436 (22%)
Query: 354 IGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLG-NFREGVTAVEEPVDCP 412
IG LP EGIL SP YRNK EFS G + P LG + + + DC
Sbjct: 42 IGELP--FEGILSSPQKEAYRNKMEFSFGDQEKDGP---LCLGLHQKRSFFNILNTDDCR 96
Query: 413 NVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISE 472
S K ++ + + ++ + +++ ++ G+ R L +R G E
Sbjct: 97 LPSPDMGKILTVSRNYFREKGISYFHKKRHEGYLRHLLLRRAEKTG-------------E 143
Query: 473 VNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNV 532
+ +S + SA +++++ E L + G+ + L N
Sbjct: 144 ILVSLIHASWNPESAQTEESLLTGWCESLLQLEKEGSLEGHFAGILHT---------KND 194
Query: 533 APADAPLRLLSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLY 590
+PADA + + +++ + ++ + LRF I+P +FFQ N+L AEKLY
Sbjct: 195 SPADAVVN------------QGTEILYGKDFFYEELLGLRFKITPFSFFQTNSLGAEKLY 242
Query: 591 SLGGDWADLGPDT----LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN 646
++A+L ++FD+ GTGTI ++ G+E+ AV A NA N
Sbjct: 243 EKIREYANLSDSAKDKPIIFDLYSGTGTITQLMSKVARDAYGVEIVDEAVRSAKENAREN 302
Query: 647 GIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEG 706
GI+NC F+ A DV+ L E + +E T E + DN N
Sbjct: 303 GIENCHFI---AGDVLKVL---------------EESAKREETKGENPEKEDDNGARN-- 342
Query: 707 CSGQDPENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPPRGGLHPTV 766
C+G+ E L P IVDPPR G+H
Sbjct: 343 CNGE--------------------------LNFETTVLPTP---DFIIVDPPRDGMHRKA 373
Query: 767 IKILRTHARLQRLLHI 782
+ ++ + ++RL+++
Sbjct: 374 LDLIIRYG-VERLIYV 388
>gi|71910911|ref|YP_282461.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes
MGAS5005]
gi|410680765|ref|YP_006933167.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pyogenes
A20]
gi|71853693|gb|AAZ51716.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes
MGAS5005]
gi|290770987|emb|CBK33775.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes]
gi|395454148|dbj|BAM30487.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes M1 476]
gi|409693354|gb|AFV38214.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pyogenes
A20]
Length = 451
Score = 95.9 bits (237), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 98/417 (23%), Positives = 165/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGL----AGDGSGLKVKSARDVVTPLAHMSYSVQL 316
++A+P E+ + G G E + + + + R + L H++Y QL
Sbjct: 33 DNALPEEVIDMRVLKVNKNSGFGKVEAYHYLSSARNADVNLTYLRTGIADLGHLTYEDQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
KK + L K+ G+S +E +G YRNK
Sbjct: 93 TFKKKQVQDSLYKIA---------GIS--------------DVTVESTIGMTEPLAYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF + + + + + + + + ++ L++ D+
Sbjct: 130 AQVPVR-RVNGQLETGFFRKHSHDLIPISDYYIQDKEIDRLI----NFTRDLLRRFDIKP 184
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS-ATFDDAVVN 495
++ + +G R + VR G G E+ML+ + F V+
Sbjct: 185 YDETEQTGLLRNIVVRRGHYSG------------------EMMLVLVTTRPKVFR---VD 223
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
E++ +AF P +IQ N+ + +I D +
Sbjct: 224 QVIEKIVEAF-----------PAVVSIIQ------NINDKNTN----AIFGKDFKTLYGK 262
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
D I DS+ + IS +F+QVNT+ AEKLY ++DL D ++ D G GTI
Sbjct: 263 DT----ITDSMLGNNYAISAQSFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTI 318
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL+ A V V G+E+ +AV DA +NA +NGI N FV AE M + KD + P
Sbjct: 319 GLSFAKTVKAVYGVEVIEAAVRDAQQNAALNGITNAYFVADTAEHAMATWAKDGIKP 375
>gi|338795738|emb|CBX19846.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes]
Length = 462
Score = 95.9 bits (237), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 97/417 (23%), Positives = 163/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLA----GDGSGLKVKSARDVVTPLAHMSYSVQL 316
++A+P E+ + G G E + + + R + L H++Y QL
Sbjct: 44 DNALPEEVIDMRVLKVNKNSGFGKVEAYHYLSPARNADVNLTYLRTGIADLGHLTYEDQL 103
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
KK + L K+ G+S +E +G YRNK
Sbjct: 104 TFKKKQVQDSLYKIA---------GIS--------------DVTVESTIGMTEPLAYRNK 140
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF + + + + + + + + ++ L++ D+
Sbjct: 141 AQVPVR-RVNGQLETGFFRKHSHDLIPISDYYIQDKEIDRLI----NFTRDLLRRFDIKP 195
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS-ATFDDAVVN 495
++ + +G R + VR G G E+ML+ + F V+
Sbjct: 196 YDETEQTGLLRNIVVRRGHYSG------------------EMMLVLVTTRPKVFR---VD 234
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
E++ +AF P +IQ+ + A ++L G+
Sbjct: 235 QVIEKIVEAF-----------PAVVSIIQNINDKNTNAIFGKDFKMLY-----GKDT--- 275
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
I DS+ + IS +F+QVNT+ AEKLY ++DL D ++ D G GTI
Sbjct: 276 ------ITDSMLGNNYAISAQSFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTI 329
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL+ A V V G+E+ +AV DA NA +NGI N FV AE M + KD + P
Sbjct: 330 GLSFAKTVKAVYGVEVIEAAVRDAQHNAALNGITNAYFVADTAEHAMATWAKDGIKP 386
>gi|417751650|ref|ZP_12399927.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
dysgalactiae subsp. equisimilis SK1249]
gi|333772560|gb|EGL49396.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
dysgalactiae subsp. equisimilis SK1249]
Length = 453
Score = 95.9 bits (237), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 102/418 (24%), Positives = 164/418 (39%), Gaps = 81/418 (19%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLA----GDGSGLKVKSARDVVTPLAHMSYSVQL 316
++A+PGE+ + G G E + V R + H++Y QL
Sbjct: 33 DNALPGEIIDMRVLKVNKNSGFGKVEAYQKLSPARNQAIDVTYLRTGIADFGHLAYEDQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K+ + L K+ A N V++ ++ IG + +PL YRNK
Sbjct: 93 RFKQKQVQDNLYKI------AGINDVTV------NQTIG---------MDNPL--AYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF + + V + + + + + +E L++ D+
Sbjct: 130 AQVPVR-RVNGQLETGFFRKHSHDLVPISDYYIQDKEIDRLI----NFTRELLRRFDVKP 184
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
++ + +G R + VR G G E+ML+ +
Sbjct: 185 YDEKEQTGLIRHIVVRRGHYSG------------------EMMLVLVTTRP--------- 217
Query: 497 EFERLAKAFAAGATASS--PSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEES 554
K F S S P +IQ N+ + +I D +
Sbjct: 218 ------KVFRVDQVISKIVESFPAVVSIIQ------NINDKNTN----AIFGKDFKTLYG 261
Query: 555 NDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGT 614
D I DS+ F IS +F+QVNT+ AEKLY ++DL D ++ D G GT
Sbjct: 262 KDT----ITDSMLGNDFAISAQSFYQVNTVMAEKLYQTAIAFSDLSEDDVVIDAYSGIGT 317
Query: 615 IGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
IGL+ A V V G+E+ +AV DA +NA NGI N FV AE+ M + K+ + P
Sbjct: 318 IGLSFAKTVKAVYGVEVIEAAVKDAQQNAARNGITNVHFVADTAENAMATWAKEGIKP 375
>gi|257086087|ref|ZP_05580448.1| RNA methyltransferase [Enterococcus faecalis D6]
gi|256994117|gb|EEU81419.1| RNA methyltransferase [Enterococcus faecalis D6]
Length = 457
Score = 95.9 bits (237), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 101/417 (24%), Positives = 167/417 (40%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGND-EGLAGDGSGLKVKS---ARDVVTPLAHMSYSVQL 316
E+A+PGE E G G G L + VK + ++PL H++Y QL
Sbjct: 37 ENALPGEKLEIKVLKTGKSFGYGKVLTVLKSSEQRVPVKDENFTKVGISPLQHLAYGAQL 96
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K + +++++ + LPE + LP I+G YRNK
Sbjct: 97 SFKTQQVENVMQRVAK-----------LPE-------VPVLP-----IIGMNDPWHYRNK 133
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + + + P + K I +++ +
Sbjct: 134 AQIPVR-KIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKY----SVKP 188
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
+N N+G R + VR G G+ + V+LI + +V
Sbjct: 189 YNESDNTGNLRHIVVRRGYHTGEMM----------------VVLITRTPKLFPISKIVPD 232
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLLSIPKADGEPEESN 555
E ++P ++Q+ + +NV D + L
Sbjct: 233 ILE---------------AIPEVVSIVQNVNPKRTNVIFGDETILLHG------------ 265
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
+I D+I +L+F IS +F+QVN E +Y ++A L + ++ D CG GTI
Sbjct: 266 ---SKKITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTI 322
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GLTLA V GIE+ AV DA NA++N I+N F AE+++ L+++ L P
Sbjct: 323 GLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEELLPKLVENGLQP 379
>gi|335429912|ref|ZP_08556808.1| TrmA family RNA methyltransferase [Haloplasma contractile SSD-17B]
gi|334888994|gb|EGM27288.1| TrmA family RNA methyltransferase [Haloplasma contractile SSD-17B]
Length = 459
Score = 95.9 bits (237), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 90/360 (25%), Positives = 141/360 (39%), Gaps = 81/360 (22%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
+ H+SY QL +K + + LK+ IG L + +G
Sbjct: 89 VQHISYEQQLANKTDLVVDNLKR------------------------IGHLEVDVNPCIG 124
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
YRNK + G + + GF + V + EI + +
Sbjct: 125 MEDPWRYRNKTQVPFGLTEAGEVVAGFYKPRSHDIVNMERCDIQDDTADEIIDRIRQLSA 184
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ--- 483
E+ D+ +N FK+ GF R + VR+G + + + V LI
Sbjct: 185 EY----DIEPYNEFKHKGFLRHVIVRKGHATNEYM----------------VTLITNKKR 224
Query: 484 -VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLL 542
+ F D V++SEF ++ K+ +NV D L L
Sbjct: 225 FLQKEPFVD-VLSSEF-KMIKSIVQNVNTKK----------------TNVILGDETLVLY 266
Query: 543 SIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPD 602
+ I+D I +++F IS +F+Q+N + + LY ++A+L +
Sbjct: 267 G---------------QEYIYDYIGDVKFAISARSFYQINPVQTKVLYEKALEYANLTKE 311
Query: 603 TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
L D CG GTI L A+RV V G+E+ A+ DA NAE+NG KN F KAE V+
Sbjct: 312 DTLIDAYCGIGTIALFAANRVKKVYGVEVVKDAIKDAKYNAELNGFKNTHFELGKAEVVI 371
>gi|291531341|emb|CBK96926.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium siraeum
70/3]
Length = 449
Score = 95.9 bits (237), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 92/369 (24%), Positives = 152/369 (41%), Gaps = 81/369 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H+SY QL K+ + + IGGL + I+
Sbjct: 82 LRHISYEAQLRAKEQFVKDAFTR------------------------IGGLSPEFLPIIR 117
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
+ +NGYRNK + +G GF + + E+ + P++ ++ I
Sbjct: 118 NTNINGYRNKLQIPIGTDKDGNLIAGFYAFHSHR-IVPCEKCLLQPDI------FSKITA 170
Query: 427 EFLQQS---DLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
+FL+ S +L ++ G R L +R+G G+ + N+ E+ I
Sbjct: 171 DFLKISTGLNLTAYDETMRKGILRHLYLRKGYYSGEICLCIVVAKNVPEIKILS------ 224
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLS 543
+RL + + + + VI + +NV D + L S
Sbjct: 225 ---------------DRLLEKYP----------EIVSSVINVNNRDTNVILGDEEIVLTS 259
Query: 544 IPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDT 603
N + + ++++ I+P AF+QVNT AE+LYS D+A+ T
Sbjct: 260 ----------KNYICDIMCKNAVN-----IAPKAFYQVNTPCAEQLYSSACDFAEPKGKT 304
Query: 604 LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMG 663
+L D+ CG GTIGL++A +IG+E+ A+ +A +NA NGI NC F+CA A +
Sbjct: 305 VL-DLYCGAGTIGLSMARTAKKIIGVEIVPEAIENAKQNALANGITNCEFICADAAEAAR 363
Query: 664 SLLKDYLNP 672
L L P
Sbjct: 364 ILHSRNLRP 372
>gi|404496828|ref|YP_006720934.1| TrmA family RNA methyltransferase [Geobacter metallireducens GS-15]
gi|78194433|gb|ABB32200.1| RNA methyltransferase, TrmA family [Geobacter metallireducens
GS-15]
Length = 493
Score = 95.9 bits (237), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 87/348 (25%), Positives = 148/348 (42%), Gaps = 73/348 (20%)
Query: 306 PLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGIL 365
PL M+Y QL K++ + + ++ + +A P ++ ++
Sbjct: 96 PLISMNYGAQLTLKRSLVEKEIRSFA--SLRAVP---------------------IDDVI 132
Query: 366 GSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF 425
SP YRN + V + ++ ++G +R V + CP + + + +
Sbjct: 133 SSPRPLQYRNSAKLVVAGTFKSP-----IIGIYRRNSHNVVDISACPLHNPLINRVVAAA 187
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
+E +++ +PV+N ++G R L VR G+ + V + AQ S
Sbjct: 188 KEGIRKGKVPVYNPRTDTGILRYLVVRVSEHTGRAM---------------AVFVTAQRS 232
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
+E LAK F A P L + + +G +AP D L
Sbjct: 233 Y---------NEIHHLAK-FVRQAV---PELDVAVQNVNTSEGNVILAPHDHFL------ 273
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
+ + ++E ++ +RF ISP +FFQVN+ +A +Y +W+ L + +
Sbjct: 274 ------TKDHAIIE-----ELAGIRFSISPRSFFQVNSGSARIIYEKVREWSALTGNEKV 322
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRF 653
D+ CG G I L LA V GIE +AV+DA RNA +NGI+NC F
Sbjct: 323 VDLYCGIGGISLFLAPGAQEVHGIEYVDAAVADAERNARLNGIRNCSF 370
>gi|260662594|ref|ZP_05863489.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
fermentum 28-3-CHN]
gi|260553285|gb|EEX26228.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
fermentum 28-3-CHN]
Length = 474
Score = 95.5 bits (236), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 135/336 (40%), Gaps = 51/336 (15%)
Query: 327 LKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQ 386
L+ L + + A V L E + K + +G ++ L +P GYRNK +F V
Sbjct: 103 LETLAYDKQLAFKKQVVL-EALAKFKPLGYRHYWVKDTLAAPHPYGYRNKAQFQVRMQ-D 160
Query: 387 AKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFW 446
G N V V P ++ + +E +PV+N SG
Sbjct: 161 GHVVAGLYQANSHTVVDMQTCAVQMPGTMKVINTLVKLIEEL----AIPVYNEANQSGII 216
Query: 447 RQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFA 506
+ L VRE + G+ +V +I + A++
Sbjct: 217 KTLAVRESLATGQ----------------IQVAIITNTAKLIKKHALL------------ 248
Query: 507 AGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSI 566
A LP V+Q NV P D PL G+ E + + I +S+
Sbjct: 249 ---VAIEDQLPEVTSVVQ------NVNPGDTPL-------VWGD-ETTLLYGQDYITESL 291
Query: 567 SNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMV 626
L F +S +F Q+N E LY DL D L D G GTIGL+LA+RV V
Sbjct: 292 MGLDFRLSARSFLQLNPEQTEVLYEEAAKALDLSKDDTLIDAYAGIGTIGLSLANRVKQV 351
Query: 627 IGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
IG+E A AV DA+ NA +NG+ N R+ AE+++
Sbjct: 352 IGMETIADAVQDANNNATLNGVTNARYEVGPAEELL 387
>gi|312898459|ref|ZP_07757849.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera
micronuciformis F0359]
gi|310620378|gb|EFQ03948.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera
micronuciformis F0359]
Length = 460
Score = 95.5 bits (236), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 92/366 (25%), Positives = 148/366 (40%), Gaps = 73/366 (19%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H+SY QL K+ + + E I K +++ LP LG
Sbjct: 90 LQHLSYEGQLAEKRQQVQDAV------------------ERIGKLKDVPVLPT-----LG 126
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
+ YRNK + VG ++ +G F E + + CP + + +
Sbjct: 127 ADDPWAYRNKMQLPVGGDKRS-----LHIGCFAEKSHRIIDIDACPIQKGGNNEIIPVVR 181
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
+++++ +P ++ K +G R + R G V+ E+ + V + V
Sbjct: 182 QWMKEYKIPAYDEDKGTGMIRHIMGRTG-------------VHSGEIMVCIVTAVPMVPH 228
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
E ++ + G LT+++ + +NV + + P
Sbjct: 229 M--------KELVQMLRKDVPG---------LTSVIQNINSRHTNVILGNKTKVIYGSPT 271
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
I DSI +L F IS +FFQVN+ A+KLY +ADL + +
Sbjct: 272 ---------------ISDSIGDLSFRISAQSFFQVNSEQAQKLYDTALSYADLKGNETVV 316
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
DV CGTGTI L LA R GIE+ A+ DA +NA NG+KN F+C A + LL
Sbjct: 317 DVYCGTGTITLFLAERAKFAYGIEIVEPAIRDAVKNARDNGVKNAHFMCGDAAYKLPELL 376
Query: 667 KDYLNP 672
+ + P
Sbjct: 377 RSGVKP 382
>gi|336391879|ref|ZP_08573278.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus coryniformis
subsp. torquens KCTC 3535]
Length = 454
Score = 95.5 bits (236), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 89/360 (24%), Positives = 141/360 (39%), Gaps = 77/360 (21%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ PL H+SY+ QL+ K+ + + +K +I LP
Sbjct: 85 IAPLGHLSYAAQLKFKQQQLRNVYQK--------------------NHLDIEVLPT---- 120
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
+G GYRNK + V + + GF + + + + P +
Sbjct: 121 -IGMADPKGYRNKAQIPVR-QVNGQLETGFYRKRSHQLIPLEDFYIQDPEIDRAIV---- 174
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
I ++ L+Q +P ++ +N G R + VR G + + M+I
Sbjct: 175 IIRDLLRQYHVPAYDEARNRGIMRNIMVRRG-------------------HFTHEMMIVL 215
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRL-L 542
++ + +L + T LP ++Q +V P + L
Sbjct: 216 ITR--------TKDIPQLQNIISGIVT----KLPKVVSIMQ------SVVPKPTNVVLGR 257
Query: 543 SIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPD 602
++ K G+ IHD I F +S +F+QVN L EKLY D A L
Sbjct: 258 TVKKLYGK---------TYIHDQILGHTFDVSALSFYQVNPLQTEKLYQTAIDAAHLTGK 308
Query: 603 TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
+ D G GTI L+LA V G+E+ +AV+DA RNA+ NGI N +F AE VM
Sbjct: 309 ETVIDAYSGIGTISLSLAKHAKYVYGVEVTEAAVADAKRNAKHNGIHNVKFQLGLAEKVM 368
>gi|290770981|emb|CBK33770.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes]
Length = 451
Score = 95.5 bits (236), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 98/417 (23%), Positives = 165/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGL----AGDGSGLKVKSARDVVTPLAHMSYSVQL 316
++A+P E+ + G G E + + + + R + L H++Y QL
Sbjct: 33 DNALPEEVIDMRVLKVNKNSGFGKVEAYHYLSSARNADVNLTYLRTGIADLGHLTYEDQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
KK + L K+ G+S +E +G YRNK
Sbjct: 93 TFKKKQVQDSLYKIA---------GIS--------------DVTVESTIGMTEPLAYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF + + + + + + + + ++ L++ D+
Sbjct: 130 AQVPVR-RVNGQLETGFFRKHSHDLIPISDYYIQDKEIDRLI----NFTRDLLRRFDIKP 184
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS-ATFDDAVVN 495
++ + +G R + VR G G E+ML+ + F V+
Sbjct: 185 YDETEQTGLLRNIVVRRGHYSG------------------EMMLVLVTTRPKVFR---VD 223
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
E++ +AF P +IQ N+ + +I D +
Sbjct: 224 QVIEKIVEAF-----------PAVVSIIQ------NINDKNTN----AIFGKDFKTLYGK 262
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
D I DS+ + IS +F+QVNT+ AEKLY ++DL D ++ D G GTI
Sbjct: 263 DT----ITDSMLGNNYAISAQSFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTI 318
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL+ A V V G+E+ +AV DA +NA +NGI N FV AE M + KD + P
Sbjct: 319 GLSFAKTVKAVYGVEVIEAAVRDAQQNAALNGITNAYFVADTAEHAMATWAKDGIKP 375
>gi|322387793|ref|ZP_08061401.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus infantis ATCC
700779]
gi|419843887|ref|ZP_14367192.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus infantis
ATCC 700779]
gi|321141295|gb|EFX36792.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus infantis ATCC
700779]
gi|385702311|gb|EIG39456.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus infantis
ATCC 700779]
Length = 452
Score = 95.5 bits (236), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 68/111 (61%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I D + F IS AF+QVNT AEKLY D+A+L D ++ D G GTIGL++A
Sbjct: 265 ITDQMLGNDFQISGPAFYQVNTEMAEKLYQTAIDFAELSEDDVVIDAYSGIGTIGLSVAK 324
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
V V G+E+ AV ++ +NAE+NGI N +VC AE+ M + LK+ + P
Sbjct: 325 HVKEVYGVEVTPEAVENSQKNAELNGITNAHYVCDTAENAMKNWLKEGIQP 375
>gi|297622046|ref|YP_003710183.1| 23S rRNA (uracil-5-)-methyltransferase [Waddlia chondrophila WSU
86-1044]
gi|297377347|gb|ADI39177.1| 23S rRNA (Uracil-5-)-methyltransferase [Waddlia chondrophila WSU
86-1044]
Length = 441
Score = 95.5 bits (236), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 64/103 (62%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
+ + I +LRF +SP +FFQVN AE+LY DWA+L + D CG GT+ L LA
Sbjct: 258 MEEEILDLRFYVSPASFFQVNPAQAEQLYRQVIDWAELKGGERVLDAYCGVGTLSLLLAR 317
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664
+ G V+G+E A++DA RNA +N + N FVCA+AE + S
Sbjct: 318 KAGRVVGVECVPQAIADAERNASLNCLANVSFVCAEAEKWIQS 360
>gi|337293929|emb|CCB91916.1| uncharacterized RNA methyltransferase BH0687 [Waddlia chondrophila
2032/99]
Length = 465
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 64/103 (62%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
+ + I +LRF +SP +FFQVN AE+LY DWA+L + D CG GT+ L LA
Sbjct: 282 MEEEILDLRFYVSPASFFQVNPAQAEQLYRQVIDWAELKGGERVLDAYCGVGTLSLLLAR 341
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664
+ G V+G+E A++DA RNA +N + N FVCA+AE + S
Sbjct: 342 KAGRVVGVECVPQAIADAERNASLNCLANVSFVCAEAEKWIQS 384
>gi|402310130|ref|ZP_10829098.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium sp. AS15]
gi|400369372|gb|EJP22372.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium sp. AS15]
Length = 452
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 90/362 (24%), Positives = 156/362 (43%), Gaps = 75/362 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
+ +SY+ QL+ KK+ + Q KL R P K ++ G+
Sbjct: 83 ILDISYNNQLKIKKDMVFQ---KLARIGNIDNP----------KIHDVVGM--------D 121
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVG-FMLGNFREGVTAVEEPVDCPNVSEIACKYASIF 425
SP YRNK + VG T+G +G +R+ + DC EI + +
Sbjct: 122 SPF--RYRNKVQLPVG------GTIGDVKIGFYRQKTHDIIPFKDCIIQDEINNEIIKMI 173
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
+ ++ + + +N ++G R + + S++MLI
Sbjct: 174 KNYMSFAKIIPYNEKDSTGVLRHIVTKISNDK------------------SQIMLIL--- 212
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
V N++ ++L ++ + +L +T+++ ++ +NV I
Sbjct: 213 -------VTNTD-KKLDISYLVEEIKKN-NLNITSIIQNINKKNTNV-----------IL 252
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
+D ND + I D L+F I P +FFQVN EK+Y+ D+A + D ++
Sbjct: 253 SSDNILLYGNDYITEYIDD----LKFKIYPNSFFQVNYTQMEKMYNKALDYASIDKDDVV 308
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
+D+ CG GTI L LA R V GIE+ +++ A NA N I+N F+C K E+ + +L
Sbjct: 309 YDLYCGIGTISLLLAKRAKYVYGIEVVQQSITSAKENARENNIENVEFICGKVENEIKAL 368
Query: 666 LK 667
+K
Sbjct: 369 IK 370
>gi|357054693|ref|ZP_09115774.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
clostridioforme 2_1_49FAA]
gi|355383997|gb|EHG31068.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
clostridioforme 2_1_49FAA]
Length = 502
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 64/101 (63%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I D I N+++ ISP +F+QVN + E+LY ++A L + ++D+ CG GTI L LA
Sbjct: 310 ITDYIGNVKYQISPLSFYQVNPVQTERLYGTALEYAGLTGNETVWDLYCGIGTISLFLAQ 369
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
+ V G+E+ A+ DA RNAEINGI N F KAE+V+
Sbjct: 370 KAKKVYGVEIVPQAIEDARRNAEINGIDNAEFFVGKAEEVL 410
>gi|228478261|ref|ZP_04062869.1| 23S rRNA-methyltransferase RumA [Streptococcus salivarius SK126]
gi|228249940|gb|EEK09210.1| 23S rRNA-methyltransferase RumA [Streptococcus salivarius SK126]
Length = 452
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 99/417 (23%), Positives = 164/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLA----GDGSGLKVKSARDVVTPLAHMSYSVQL 316
++A+PGE+ + G G E + R + HM+Y QL
Sbjct: 33 DNALPGEVIKMRVLKLKKNIGFGKVEEYVTLSPNRNQDIDATYLRSGIADFGHMTYEEQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K+ + L K G+S ++ LG YRNK
Sbjct: 93 KFKRKQVVDNLYKTA---------GIS--------------DVEVAETLGMETPYAYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF-QEFLQQSDLP 435
+ V ++ + GF N + + P++ + + +F ++ L++ DL
Sbjct: 130 AQVPVR-RVKGQLETGFYRKNSHDLI-----PIEDFLIQDKEIDKLIVFVRDLLRRYDLK 183
Query: 436 VWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVN 495
++ + +G R L VR G G ++ML+ + ++
Sbjct: 184 PYDEKEQTGLIRHLVVRRGHYSG------------------QIMLVFVTTRPKI--FRID 223
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
++ +AF P +IQ+ + A R L G+
Sbjct: 224 QIIAKITEAF-----------PNIVSIIQNINDKNTNAIFGKDFRTLY-----GQDT--- 264
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
I DS+ + IS +F+QVNT AEKLY D++DL D+++ D G GTI
Sbjct: 265 ------ITDSMLGNDYEISAQSFYQVNTEMAEKLYQTAIDFSDLNSDSIVIDAYSGIGTI 318
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL+ A +V V G+E+ +AV DA +NA+ NGI N +V AE+ M KD + P
Sbjct: 319 GLSFAKQVKEVYGVEVIETAVEDAKKNADRNGITNAHYVADSAENAMAKWSKDGIKP 375
>gi|94992657|ref|YP_600756.1| 23S rRNA m(5)U1939 methyltransferase [Streptococcus pyogenes
MGAS2096]
gi|94546165|gb|ABF36212.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes
MGAS2096]
Length = 464
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 98/417 (23%), Positives = 164/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLA----GDGSGLKVKSARDVVTPLAHMSYSVQL 316
++A+P E+ + G G E + + + R + L H++Y QL
Sbjct: 44 DNALPEEVIDMRVLKVNKNSGFGKVEAYHYLSPARNADVNLTYLRTGIADLGHLTYEDQL 103
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
KK + L K+ G+S +E +G YRNK
Sbjct: 104 TFKKKQVQDSLYKIA---------GIS--------------DVTVESTIGMTEPLAYRNK 140
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF + + + + + + + + ++ L++ D+
Sbjct: 141 AQVPVR-RVNGQLETGFFRKHSHDLIPISDYYIQDKEIDRLI----NFTRDLLRRFDIKP 195
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS-ATFDDAVVN 495
++ + +G R + VR G G E+ML+ + F V+
Sbjct: 196 YDETEQTGLLRNIVVRRGHYSG------------------EMMLVLVTTRPKVFR---VD 234
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
E++ +AF P +IQ N+ + +I D +
Sbjct: 235 QVIEKIVEAF-----------PAVVSIIQ------NINDKNTN----AIFGKDFKTLYGK 273
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
D I DS+ + IS +F+QVNT+ AEKLY ++DL D ++ D G GTI
Sbjct: 274 DT----ITDSMLGNNYAISAQSFYQVNTIMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTI 329
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL+ A V V G+E+ +AV DA +NA +NGI N FV AE M + KD + P
Sbjct: 330 GLSFAKTVKAVYGVEVIEAAVRDAQQNAALNGITNAYFVADTAEHAMATWAKDGIKP 386
>gi|331268633|ref|YP_004395125.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
BKT015925]
gi|329125183|gb|AEB75128.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
BKT015925]
Length = 495
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 91/374 (24%), Positives = 154/374 (41%), Gaps = 84/374 (22%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGI-- 364
+ H +Y QLE KKN + L+++ + L + + I L KL +
Sbjct: 112 IQHFNYDAQLEFKKNRVKDCLERIGK-----------LQVITKEEKNISYLDNKLAILHD 160
Query: 365 -LGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
LG YRNK + VG + +GF + + + C E+ S
Sbjct: 161 TLGMQNPYRYRNKVQLPVGEE-NGEIKIGF----YAPRSHNIIDMDICYIQDEVGDTVVS 215
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
+ +E++++ ++ +N KN G R + +R G N +EVM++
Sbjct: 216 LTREWMEKYNIKPYNEEKNVGIVRHIMIRRG------------------FNTNEVMVVI- 256
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLP----LTALVIQDHQGVSNVA------ 533
+ LP L L++++ GV+++
Sbjct: 257 --------------------------VTRTNELPHKEELIELILKNIDGVTSIVQNINSK 290
Query: 534 PADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLG 593
+ L L +I E I D I +F ISP +FFQVN + E LY+
Sbjct: 291 KTNVVLGLNNITLYGKE----------YISDYIGEFKFNISPLSFFQVNPIQTEVLYNKA 340
Query: 594 GDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRF 653
++A L + ++FD CGTGTI L L+ V G+E+ A+ +A NA+ N + N F
Sbjct: 341 LEYAALTGNEVVFDAYCGTGTISLFLSKNAKKVYGVEIVEDAIENAKINAKENNVNNAEF 400
Query: 654 VCAKAEDVMGSLLK 667
+ K+E+V+ +L+K
Sbjct: 401 IVGKSEEVIPNLIK 414
>gi|331092292|ref|ZP_08341120.1| hypothetical protein HMPREF9477_01763 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330401724|gb|EGG81303.1| hypothetical protein HMPREF9477_01763 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 554
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 79/149 (53%), Gaps = 15/149 (10%)
Query: 559 EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLT 618
+ I D I N+++ ISP +F+QVN E LY ++A L + ++D+ CG GTI L
Sbjct: 265 QTYITDYIGNVKYQISPLSFYQVNPKQTENLYQYALEYAGLTGEETVWDLYCGIGTISLF 324
Query: 619 LAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDE 678
LA + V G+E+ A+ DA RNA+INGI+N F KAE+++ ++Y E
Sbjct: 325 LAQKAKKVYGVEIVPQAIEDAKRNADINGIENAEFFVGKAEEILPEYYENYAR------E 378
Query: 679 HASEGSNKEITIAEEKDSSRDNVPENEGC 707
H E + ++ + + P +GC
Sbjct: 379 HDGEKAYADVIVVD---------PPRKGC 398
>gi|384514038|ref|YP_005709131.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus faecalis
OG1RF]
gi|430362247|ref|ZP_19426977.1| RNA methyltransferase [Enterococcus faecalis OG1X]
gi|430366878|ref|ZP_19427648.1| RNA methyltransferase [Enterococcus faecalis M7]
gi|327535927|gb|AEA94761.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus faecalis
OG1RF]
gi|429512158|gb|ELA01773.1| RNA methyltransferase [Enterococcus faecalis OG1X]
gi|429516884|gb|ELA06359.1| RNA methyltransferase [Enterococcus faecalis M7]
Length = 456
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 97/389 (24%), Positives = 156/389 (40%), Gaps = 87/389 (22%)
Query: 298 KSARDVVTP------------LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLP 345
K+A+D V P L H++Y QL+ KK+ + Q L K
Sbjct: 66 KAAKDRVVPPCPVYETCGGCQLQHLAYKAQLDFKKDLLKQALNKF--------------- 110
Query: 346 EWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAV 405
+ + +L +G YRNK +F + + + G + + V
Sbjct: 111 ------KPVNYQNYELRKTIGMENPWNYRNKAQFQLR-QIDGQVEAGLYQADSHQLV--- 160
Query: 406 EEPVD-CPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVE 464
P+D C K + + L LP+++ KNSG +R L VR G G
Sbjct: 161 --PIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTLMVRVGIQTG------ 212
Query: 465 NLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQ 524
EV ++ S F + E++ +A + LP ++Q
Sbjct: 213 ------------EVQVVFITQSKKF------PQKEKMVRAI-------NEQLPEVVSIMQ 247
Query: 525 DHQGV-SNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNT 583
+ Q +++ D L L +ES I + I+++ F +SP AFFQ+N
Sbjct: 248 NVQNKKTSLVMGDDTLHLWG--------KES-------IEEHINDVVFDLSPRAFFQLNP 292
Query: 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNA 643
E LY+ G DL P+ + D CG GTIGL+LA + V G++ +A+ DA NA
Sbjct: 293 EQTEVLYNEGIKALDLQPNETVVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNA 352
Query: 644 EINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
+ G+ N + AED++ K+ P
Sbjct: 353 KRLGVTNTHYAVGTAEDLLPKWFKEGFKP 381
>gi|289422275|ref|ZP_06424129.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
anaerobius 653-L]
gi|289157326|gb|EFD05937.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
anaerobius 653-L]
Length = 454
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 143/319 (44%), Gaps = 55/319 (17%)
Query: 352 REIGGLP-CKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPV- 409
R IGGL ++ +G YRNK +F V K +GF + + V++ V
Sbjct: 105 RRIGGLEDVEVLDAIGMENPFRYRNKAQFPVRLE-NGKVKIGFYKKKSHD-IIDVDKCVI 162
Query: 410 -DCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEV 468
D N EI I ++++ + ++ +++ +SG R + + G + G+ +
Sbjct: 163 QDVKN-DEII----EIIRDYIAEENISIYDEKSHSGVLRHIVTKCGFTSGQVM------- 210
Query: 469 NISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQG 528
V+L+A F+ + K G S T+LV+ ++
Sbjct: 211 ---------VVLVA-----------TEDRFKNIDKL--VGKLKESIE-GFTSLVVNINKD 247
Query: 529 VSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEK 588
+NV + N + +I D+I +L+F ISP +FFQVN + E
Sbjct: 248 RTNVILGRKNI---------------NKFGDGKIVDNIGDLKFEISPLSFFQVNPVQTEV 292
Query: 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI 648
LY+ ++ADL +FDV CG G+I L LA + V G+E+ A+ DA NA++NG+
Sbjct: 293 LYNKALEFADLKEGDRVFDVYCGIGSISLFLAQKAEFVYGVEIVEDAIKDAMINAKLNGM 352
Query: 649 KNCRFVCAKAEDVMGSLLK 667
N F KAE+V+ + K
Sbjct: 353 DNLEFFVGKAEEVVPEIYK 371
>gi|257416880|ref|ZP_05593874.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis
ARO1/DG]
gi|257158708|gb|EEU88668.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis
ARO1/DG]
Length = 456
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 97/389 (24%), Positives = 156/389 (40%), Gaps = 87/389 (22%)
Query: 298 KSARDVVTP------------LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLP 345
K+A+D V P L H++Y QL+ KK+ + Q L K
Sbjct: 66 KAAKDRVVPPCPVYETCGGCQLQHLAYKAQLDFKKDLLKQALNKF--------------- 110
Query: 346 EWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAV 405
+ + +L +G YRNK +F + + + G + + V
Sbjct: 111 ------KPVNYQNYELRKTIGMENPWNYRNKAQFQLR-QIDGQVEAGLYQADSHQLV--- 160
Query: 406 EEPVD-CPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVE 464
P+D C K + + L LP+++ KNSG +R L VR G G
Sbjct: 161 --PIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTLMVRVGIQTG------ 212
Query: 465 NLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQ 524
EV ++ S F + E++ +A + LP ++Q
Sbjct: 213 ------------EVQVVFITQSKKF------PQKEKMVRAI-------NEQLPEVVSIMQ 247
Query: 525 DHQGV-SNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNT 583
+ Q +++ D L L +ES I + I+++ F +SP AFFQ+N
Sbjct: 248 NVQNKKTSLVMGDDTLHLWG--------KES-------IEEHINDVVFDLSPRAFFQLNP 292
Query: 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNA 643
E LY+ G DL P+ + D CG GTIGL+LA + V G++ +A+ DA NA
Sbjct: 293 EQTEVLYNEGIKALDLQPNETVVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNA 352
Query: 644 EINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
+ G+ N + AED++ K+ P
Sbjct: 353 KRLGVTNTHYAVGTAEDLLPKWFKEGFKP 381
>gi|417856665|ref|ZP_12501724.1| 23S rRNA m(5)U1939 methyltransferase [Streptococcus pyogenes HKU
QMH11M0907901]
gi|387933620|gb|EIK41733.1| 23S rRNA m(5)U1939 methyltransferase [Streptococcus pyogenes HKU
QMH11M0907901]
Length = 452
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 98/417 (23%), Positives = 164/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLA----GDGSGLKVKSARDVVTPLAHMSYSVQL 316
++A+P E+ + G G E + + + R + L H++Y QL
Sbjct: 33 DNALPEEVIDMRVLKVNKNSGFGKVEAYHYLSPARNADVNLTYLRTGIADLGHLTYEDQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
KK + L K+ G+S +E +G YRNK
Sbjct: 93 TFKKKQVQDSLYKIA---------GIS--------------DVTVESTIGMTEPLAYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF + + + + + + + + ++ L++ D+
Sbjct: 130 AQVPVR-RVNGQLETGFFRKHSHDLIPISDYYIQDKEIDRLI----NFTRDLLRRFDIKP 184
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS-ATFDDAVVN 495
++ + +G R + VR G G E+ML+ + F V+
Sbjct: 185 YDETEQTGLLRNIVVRRGHYSG------------------EMMLVLVTTRPKVFR---VD 223
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
E++ +AF P +IQ N+ + +I D +
Sbjct: 224 QVIEKIVEAF-----------PAVVSIIQ------NINDKNTN----AIFGKDFKTLYGK 262
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
D I DS+ + IS +F+QVNT+ AEKLY ++DL D ++ D G GTI
Sbjct: 263 DT----ITDSMLGNNYAISAQSFYQVNTIMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTI 318
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL+ A V V G+E+ +AV DA +NA +NGI N FV AE M + KD + P
Sbjct: 319 GLSFAKTVKAVYGVEVIEAAVRDAQQNAALNGITNAYFVADTAEHAMATWAKDGIKP 375
>gi|421452041|ref|ZP_15901402.1| 23S rRNA m(5)U methyltransferase [Streptococcus salivarius K12]
gi|400182472|gb|EJO16734.1| 23S rRNA m(5)U methyltransferase [Streptococcus salivarius K12]
Length = 452
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 97/417 (23%), Positives = 160/417 (38%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLA----GDGSGLKVKSARDVVTPLAHMSYSVQL 316
++A+PGE+ + G G E + R + HM+Y QL
Sbjct: 33 DNALPGEVIKMRVLKLKKNIGFGKVEEYVILSPNRNQDIDATYLRSGIADFGHMTYEEQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K+ + L K G+S ++ LG YRNK
Sbjct: 93 KFKRKQVVDNLYKTA---------GIS--------------DVEVAETLGMETPYAYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF-QEFLQQSDLP 435
+ V ++ + GF N + + P++ + + +F ++ L++ DL
Sbjct: 130 AQVPVR-RVKGQLETGFYRKNSHDLI-----PIEDFLIQDKEIDKLIVFVRDLLRRYDLK 183
Query: 436 VWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVN 495
++ + +G R L VR G G+ + ++ F ++
Sbjct: 184 PYDEKEQTGLIRHLVVRRGHYSGQMM-----------------LVFVTTRPKVFR---ID 223
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
++ +AF P +IQ+ + A R L + N
Sbjct: 224 QIIAKITEAF-----------PSVVSIIQNINDKNTNAIFGKEFRTLYGQDTITDRMLGN 272
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
D + IS +F+QVNT AEKLY D++DL D+++ D G GTI
Sbjct: 273 D--------------YEISAQSFYQVNTEMAEKLYQTAIDFSDLNSDSIVIDAYSGIGTI 318
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL+ A +V V G+E+ +AV DA +NAE NGI N +V AE+ M KD + P
Sbjct: 319 GLSFAKQVKEVYGVEVIETAVEDAKKNAERNGITNAHYVADSAENTMAKWSKDGIKP 375
>gi|326791042|ref|YP_004308863.1| RNA methyltransferase, TrmA family [Clostridium lentocellum DSM
5427]
gi|326541806|gb|ADZ83665.1| RNA methyltransferase, TrmA family [Clostridium lentocellum DSM
5427]
Length = 452
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 91/357 (25%), Positives = 148/357 (41%), Gaps = 76/357 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLP-CKLEGIL 365
L H+SY QL+ K + K C N IGGL ++ L
Sbjct: 86 LQHLSYEAQLDWKTKKV------------KDCLN------------RIGGLKDIEVLPTL 121
Query: 366 GSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF 425
G YRNK ++ + + K GF + + + P I +
Sbjct: 122 GMGTPYHYRNKAQYPIR-QINGKVQTGFFAPRSHQLIPLETCYIQDPKKEAIMKAVLA-- 178
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
FL++ + +++ K++G R L ++ G + E+M+ ++
Sbjct: 179 --FLEKYKISIYDEEKHTGLVRHLMIKTGY------------------HTEEMMVCLVIN 218
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
A EF + KA A P+T++++ H SN ++ L
Sbjct: 219 GPKLPHA---DEFVKAIKAVA----------PVTSIILNQHLEKSNTILGNSCTVL---- 261
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
DGE N ++ D I +L+F ISP +FFQVN E LY+ ++A+L D ++
Sbjct: 262 --DGE----NAII-----DYIGDLQFKISPLSFFQVNPQQTEVLYTKALEYAELTGDEIV 310
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
+D CG G+I L LA + V G+E+ A+ +A NA +N I N F KAE+V+
Sbjct: 311 WDAYCGIGSISLFLAQKAKKVYGVEIIPEAIENAKENAALNHITNAEFYVGKAEEVI 367
>gi|373115851|ref|ZP_09530015.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 7_1_58FAA]
gi|371670009|gb|EHO35100.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 7_1_58FAA]
Length = 543
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 95/350 (27%), Positives = 142/350 (40%), Gaps = 78/350 (22%)
Query: 309 HMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSP 368
HM+Y+ +LE K+ + L++L GG + ILG+
Sbjct: 89 HMNYAEELEAKRIRVEDALRRL------------------------GGAEIHVSAILGAE 124
Query: 369 LVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEF 428
V+ YRNK +F V P +GF +R V + DC E A + +E+
Sbjct: 125 QVDRYRNKAQFPVAKG----PRIGF----YRPRSHDVIDVDDCLLQGEAAARLRGAVKEW 176
Query: 429 LQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSAT 488
+ + +P +N +G R + VR R+ G+ L L VN V EV L+ + A
Sbjct: 177 MAEYSIPAYNERTFTGLVRHVYVRTNRA-GRSLCC--LLVNGRGVP-REVELVRALRRA- 231
Query: 489 FDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKAD 548
P+L L + + +NV D+ L
Sbjct: 232 ------------------------EPNLAGIVLGVNEKH--NNVILGDSYRTLWG----- 260
Query: 549 GEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDV 608
E + D++ L F +S +F+QVN E LY ++A L + D+
Sbjct: 261 ----------EDFLSDTLCGLTFRLSVPSFYQVNPAQTEVLYGKALEFAGLTGAETVLDL 310
Query: 609 CCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658
CG GTI L +A + GMV G E+ AV DA NA N I+N RF+CA A
Sbjct: 311 YCGIGTISLVMARKAGMVWGAEVVPQAVDDAIANARRNHIENARFLCADA 360
>gi|184154533|ref|YP_001842873.1| RNA methyltransferase [Lactobacillus fermentum IFO 3956]
gi|183225877|dbj|BAG26393.1| putative RNA methyltransferase [Lactobacillus fermentum IFO 3956]
Length = 535
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 135/336 (40%), Gaps = 51/336 (15%)
Query: 327 LKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQ 386
L+ L + + A V L E + K + +G ++ L +P GYRNK +F V
Sbjct: 164 LETLAYDKQLAFKKQVVL-EALAKFKPLGYRHYWVKDTLAAPHPYGYRNKAQFQVRMQ-D 221
Query: 387 AKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFW 446
G N V V P +I + +E +PV+N SG
Sbjct: 222 GHVVAGLYQTNSHTVVDMQTCAVQMPGTMKIINTLVKLIEEL----AIPVYNEANQSGII 277
Query: 447 RQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFA 506
+ L VRE + G+ +V +I + A++
Sbjct: 278 KTLAVRESLATGQ----------------IQVAIITNTAKLIKKHALL------------ 309
Query: 507 AGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSI 566
A LP V+Q NV P D PL G+ E + + I +S+
Sbjct: 310 ---VAIEDQLPEVTSVVQ------NVNPGDTPL-------VWGD-ETTLLYGQDYITESL 352
Query: 567 SNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMV 626
L F +S +F Q+N E LY DL D L D G GTIGL+LA+RV V
Sbjct: 353 MGLDFRLSARSFLQLNPEQTEVLYEEAAKALDLSKDDTLIDAYAGIGTIGLSLANRVKQV 412
Query: 627 IGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
IG+E A AV DA+ NA +NG+ N R+ AE+++
Sbjct: 413 IGMETIADAVQDANNNATLNGVTNARYEVGPAEELL 448
>gi|223044024|ref|ZP_03614064.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus capitis
SK14]
gi|417906385|ref|ZP_12550175.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus capitis
VCU116]
gi|222442567|gb|EEE48672.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus capitis
SK14]
gi|341598041|gb|EGS40559.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus capitis
VCU116]
Length = 455
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/356 (23%), Positives = 139/356 (39%), Gaps = 72/356 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
+ HM+Y QL KK + + + + + P ++ LG
Sbjct: 85 MQHMTYQAQLNMKKEQVVNLFHR--KGPFEDIP---------------------IQPTLG 121
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
YRNK + VG K +GF +R+ + + C E + +
Sbjct: 122 MEQPWRYRNKSQIPVGKDKDNKAIMGF----YRQRSHDIIDMDSCLIQDEQHQNIMNYVK 177
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
+ + ++ +++ G R L +R G + E+M+I +
Sbjct: 178 HWFNELNMSIYDEKNKRGLMRHLVIRTG------------------YHTDEIMVIFVTNG 219
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
F +A N ++L F P++ I D SNV + L
Sbjct: 220 KKFKNA--NVLVQKLISEF--------PNITSIKQNINDTH--SNVIMGPQSVTLYG--- 264
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
+ +I D +S + F IS +F+Q+N+ EKLY D+A L + ++
Sbjct: 265 ------------KDKIVDELSEVTFNISDQSFYQINSAQTEKLYQKAIDYAQLTGEEIVL 312
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
D CG GTIGL +A + V G+E+ SA+ DA NA N + N F C KAEDV+
Sbjct: 313 DTYCGIGTIGLYMAPQAKHVYGVEVVPSAIKDAQENATKNQLNNTTFECGKAEDVI 368
>gi|330718855|ref|ZP_08313455.1| tRNA (uracil-5-)-methyltransferase related enzyme [Leuconostoc
fallax KCTC 3537]
Length = 465
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 89/371 (23%), Positives = 142/371 (38%), Gaps = 79/371 (21%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ PL ++ YS QL K+N + Q+ KK+ + A G+ P
Sbjct: 94 IAPLVNLKYSAQLLFKQNQVQQLFKKMNIDVTVAPTIGMENP------------------ 135
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
YRNK + V + + GF + V + P + E S
Sbjct: 136 -------TAYRNKAQVPVQ-EINGQLETGFYRRGSHKLVPTNHFYIQDPKIDEAV----S 183
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
I ++ L++ + ++ G R + VR G + + V++I
Sbjct: 184 IVRDVLRELKISAYDEDTKKGTIRHIMVRRGYYSHELM----------------VVIITH 227
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLS 543
+ D ++ E+L + L +L+ + ++NV
Sbjct: 228 TAKLLGSDIIIKKLREQLPE--------------LKSLIHNVNNKMTNVIMG-------- 265
Query: 544 IPKADGEPEESNDVV--EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGP 601
E N V+ E IHD + +L F I P +F+QVN LY L D A L P
Sbjct: 266 ---------EDNRVMWGEDHIHDQLLDLDFVIGPNSFYQVNPQTTSVLYQLAADKAQLKP 316
Query: 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661
++ D G GTI L++A+RV V G+E+ AV DA NA+ N I N F+ A +
Sbjct: 317 QDVVVDAYSGIGTITLSIANRVKKVYGVEIVQQAVVDAQLNAKNNQISNVSFIAKDAPEQ 376
Query: 662 MGSLLKDYLNP 672
M + L P
Sbjct: 377 MAQWAAEGLKP 387
>gi|23098223|ref|NP_691689.1| RNA methyltransferase [Oceanobacillus iheyensis HTE831]
gi|50401583|sp|Q8ES75.1|Y768_OCEIH RecName: Full=Uncharacterized RNA methyltransferase OB0768
gi|22776448|dbj|BAC12724.1| RNA methyltransferase [Oceanobacillus iheyensis HTE831]
Length = 459
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 89/367 (24%), Positives = 150/367 (40%), Gaps = 74/367 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L HMSY +QL+ K+ + ++KK+ + +P + ILG
Sbjct: 87 LQHMSYDLQLQMKQGQVHNVMKKVAH---------------------LDQVP--VHPILG 123
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF- 425
+ YRNK + VG + VGF +++ + + D ++ + A F
Sbjct: 124 MEEPSHYRNKVQIPVGEK-NGEVIVGF----YQKRSHRILQNQDTCHIQDEAINEVLPFT 178
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
++ + + + ++ + G R + VR G ++M++
Sbjct: 179 RQLMNKYGIQAYDEKSHRGQLRHIMVRVGHY------------------TKDIMIVFVTK 220
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
++ F E +R+ K T P + + D + +NV L
Sbjct: 221 TSKF------PEKDRIIKEL----TEQFPQVKSIVQNVNDQR--TNVVLGKKTKVLWG-- 266
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
E I+D I +L F ISP +FFQVN + + LY ++A++ D ++
Sbjct: 267 -------------ENYIYDKIGDLTFAISPKSFFQVNPVQTKVLYDKALEYANIDKDDVV 313
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
D CG G+I L LA + V GIE+ A+ DA NAEING+ N F +AE VM
Sbjct: 314 IDAYCGIGSISLFLAQKAKKVYGIEVVPEAIEDAKMNAEINGMNNVEFSVGQAEKVMPKW 373
Query: 666 LKDYLNP 672
+ L+P
Sbjct: 374 KEQGLDP 380
>gi|417928049|ref|ZP_12571437.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
dysgalactiae subsp. equisimilis SK1250]
gi|340765923|gb|EGR88449.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
dysgalactiae subsp. equisimilis SK1250]
Length = 467
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 101/418 (24%), Positives = 164/418 (39%), Gaps = 81/418 (19%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLA----GDGSGLKVKSARDVVTPLAHMSYSVQL 316
++A+PGE+ + G G E + V R + H++Y QL
Sbjct: 47 DNALPGEIIDMRVLKVNKNSGFGKVEAYQKLSPARNQAIDVTYLRTGIADFGHLAYEDQL 106
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K+ + L K+ A N V++ ++ IG + +PL YRNK
Sbjct: 107 RFKQKQVQDNLYKI------AGINDVTV------NQTIG---------MDNPL--AYRNK 143
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF + + V + + + + + +E L++ D+
Sbjct: 144 AQVPVR-RVNGQLETGFFRKHSHDLVPISDYYIQDKEIDRLI----NFTRELLRRFDVKP 198
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
++ + +G R + VR G G E+ML+ +
Sbjct: 199 YDEKEQTGLIRHIVVRRGHYSG------------------EMMLVLVTTRP--------- 231
Query: 497 EFERLAKAFAAGATASS--PSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEES 554
K F S S P +IQ N+ + +I D +
Sbjct: 232 ------KVFRVDQVISKIVESFPAVVSIIQ------NINDKNTN----AIFGKDFKTLYG 275
Query: 555 NDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGT 614
D I DS+ + IS +F+QVNT+ AEKLY ++DL D ++ D G GT
Sbjct: 276 KDT----ITDSMLGNDYAISAQSFYQVNTVMAEKLYQTAIAFSDLSEDDVVIDAYSGIGT 331
Query: 615 IGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
IGL+ A V V G+E+ +AV DA +NA NGI N FV AE+ M + K+ + P
Sbjct: 332 IGLSFAKTVKAVYGVEVIEAAVKDAQQNAARNGITNVHFVADTAENAMATWAKEGIKP 389
>gi|363889657|ref|ZP_09317016.1| hypothetical protein HMPREF9628_01512 [Eubacteriaceae bacterium
CM5]
gi|361966526|gb|EHL19432.1| hypothetical protein HMPREF9628_01512 [Eubacteriaceae bacterium
CM5]
Length = 235
Score = 95.1 bits (235), Expect = 1e-16, Method: Composition-based stats.
Identities = 45/105 (42%), Positives = 67/105 (63%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I D I NL F I P +F+QVN++ EK+Y D+A+L ++D+ CG GTI L L+
Sbjct: 46 IQDMIENLTFNIYPNSFYQVNSIQMEKMYKRALDYANLQGTETVYDLYCGIGTITLLLSQ 105
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
+ V GIE+ A A+ A +NA+IN I+N +F+C K ED + +L+
Sbjct: 106 KCKTVYGIEVVAQAIESAKQNAKINNIENAKFICGKVEDEIENLV 150
>gi|194467488|ref|ZP_03073475.1| RNA methyltransferase, TrmA family [Lactobacillus reuteri 100-23]
gi|194454524|gb|EDX43421.1| RNA methyltransferase, TrmA family [Lactobacillus reuteri 100-23]
Length = 467
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 106/390 (27%), Positives = 150/390 (38%), Gaps = 91/390 (23%)
Query: 298 KSARDVVTP------------LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLP 345
K +RD VTP L +++Y QL+ K+ I L+K P G
Sbjct: 73 KKSRDRVTPRDEYADIAGGFELENLAYQQQLKFKRQVIIDSLEKFQ-------PYG---- 121
Query: 346 EWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAV 405
R P + +P GYRNK +F V + K G N V
Sbjct: 122 -----YRNYNVRPT-----IAAPEEYGYRNKAQFQVR-MVNGKVAAGLYQPNSHTLVDME 170
Query: 406 EEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVEN 465
V P E + ++ +PV++ NSG + L V+E S G
Sbjct: 171 TCAVQMPRTMETVRAVTKMIEDL----QIPVYDEKHNSGIIKTLAVQESWSTG------- 219
Query: 466 LEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQD 525
EV L +SA ER+ K LP V+Q
Sbjct: 220 -----------EVQLTFITNSAKLPHK--RELLERIEK-----------ELPAVVSVMQ- 254
Query: 526 HQGVSNVAPADAPL----RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQV 581
NV P D PL +++ + D I +S+ L F +S +F Q+
Sbjct: 255 -----NVNPGDTPLVWGEKMIHLAGKDS------------ILESLMGLDFKLSARSFLQL 297
Query: 582 NTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHR 641
N E LY +L D L D G GTIGL+LA RV V G+E+ AV+DA+
Sbjct: 298 NPEQTEVLYEEASKALELDKDDTLIDAYAGIGTIGLSLASRVKAVRGMEIIPEAVADANE 357
Query: 642 NAEINGIKNCRFVCAKAEDVMGSLLKDYLN 671
NA++N I N ++ KAE+V+ K+ LN
Sbjct: 358 NAKLNNIANAKYEVGKAEEVLPRWQKEGLN 387
>gi|366165874|ref|ZP_09465629.1| RNA methyltransferase [Acetivibrio cellulolyticus CD2]
Length = 552
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 126/290 (43%), Gaps = 50/290 (17%)
Query: 373 YRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQS 432
YRNK ++ VG L + VGF ++ ++ P+ C ++ + I +EFL+++
Sbjct: 134 YRNKAQYPVG-KLNDELKVGFYA---KKSHDIIDSPI-CMIQHSVSDRAKLIVKEFLKEN 188
Query: 433 DLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDA 492
++ V++ G R + R G + G E+M++ ++ +
Sbjct: 189 NISVYDETTGKGLVRHVMTRTGFNTG------------------EIMIVLVLNGKSL--- 227
Query: 493 VVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPE 552
E ++L K T P + L I +N+ + +
Sbjct: 228 ---PEQDKLVKLL----TGELPEIKSIILNINTMN--TNIILGTRNIVIFG--------- 269
Query: 553 ESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGT 612
E I D I +F ISP +FFQVN + E LY+ ++A L +FD+ CG
Sbjct: 270 ------EETITDYIGKFKFKISPLSFFQVNPVQTEVLYNKALEYAGLTGQETVFDLYCGI 323
Query: 613 GTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
GTI L L+ + V G+E+ AV DA NA +NG++N F +AE V+
Sbjct: 324 GTISLFLSEKTKKVYGVEVVEEAVRDAKVNAGVNGVENVEFFVGEAERVI 373
>gi|227514178|ref|ZP_03944227.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus fermentum ATCC
14931]
gi|227087458|gb|EEI22770.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus fermentum ATCC
14931]
Length = 474
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 140/336 (41%), Gaps = 51/336 (15%)
Query: 327 LKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQ 386
L+ L + + A V L E + K + +G ++ L +P GYRNK +F V +Q
Sbjct: 103 LETLAYDKQLAFKKQVVL-EALAKFKPLGYRHYWVKDTLAAPHPYGYRNKAQFQV--RMQ 159
Query: 387 AKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFW 446
V G ++ V + C K + + +++ +PV+N SG
Sbjct: 160 DGHVVA---GLYQADSHTVVDMQTCAVQMPGTMKVINTLVKLIEELAIPVYNEANQSGII 216
Query: 447 RQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFA 506
+ L VRE + G+ +V +I + A++
Sbjct: 217 KTLAVRESLATGQ----------------IQVAIITNTAKLIKKHALL------------ 248
Query: 507 AGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSI 566
A LP V+Q NV P D PL G+ E + + I +S+
Sbjct: 249 ---VAIEDQLPEVTSVVQ------NVNPGDTPL-------VWGD-ETTLLYGQDYITESL 291
Query: 567 SNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMV 626
L F +S +F Q+N E LY DL D L D G GTIGL+LA+RV V
Sbjct: 292 MGLDFRLSARSFLQLNPEQTEVLYEEAAKALDLSKDDTLIDAYAGIGTIGLSLANRVKQV 351
Query: 627 IGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
IG+E A AV DA+ NA +NG+ N R+ AE+++
Sbjct: 352 IGMETIADAVQDANNNATLNGVTNARYEVGPAEELL 387
>gi|94988772|ref|YP_596873.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes
MGAS9429]
gi|94542280|gb|ABF32329.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes
MGAS9429]
Length = 462
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 98/417 (23%), Positives = 164/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLA----GDGSGLKVKSARDVVTPLAHMSYSVQL 316
++A+P E+ + G G E + + + R + L H++Y QL
Sbjct: 44 DNALPEEVIDMRVLKVNKNSGFGKVEAYHYLSPARNADVNLTYLRTGIADLGHLTYEDQL 103
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
KK + L K+ G+S +E +G YRNK
Sbjct: 104 TFKKKQVQDSLYKIA---------GIS--------------DVTVESTIGMTEPLAYRNK 140
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF + + + + + + + + ++ L++ D+
Sbjct: 141 AQVPVR-RVNGQLETGFFRKHSHDLIPISDYYIQDKEIDRLI----NFTRDLLRRFDIKP 195
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS-ATFDDAVVN 495
++ + +G R + VR G G E+ML+ + F V+
Sbjct: 196 YDETEQTGLLRNIVVRRGHYSG------------------EMMLVLVTTRPKVFR---VD 234
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
E++ +AF P +IQ N+ + +I D +
Sbjct: 235 QVIEKIVEAF-----------PAVVSIIQ------NINDKNTN----AIFGKDFKTLYGK 273
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
D I DS+ + IS +F+QVNT+ AEKLY ++DL D ++ D G GTI
Sbjct: 274 DT----ITDSMLGNNYAISAQSFYQVNTIMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTI 329
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL+ A V V G+E+ +AV DA +NA +NGI N FV AE M + KD + P
Sbjct: 330 GLSFAKTVKAVYGVEVIEAAVRDAQQNAALNGITNAYFVADTAEHAMATWAKDGIKP 386
>gi|307703903|ref|ZP_07640844.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
ATCC 35037]
gi|307622738|gb|EFO01734.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
ATCC 35037]
Length = 379
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 96/375 (25%), Positives = 152/375 (40%), Gaps = 79/375 (21%)
Query: 301 RDVVTPLAHMSYSVQLEHKKNSIAQMLKKL--TRNARKACPNGVSLPEWIMKSREIGGLP 358
R + L H++Y QL+ K + L K+ R+ A G+ P +K R +P
Sbjct: 5 RSGIADLGHLAYPEQLKFKTKQVKDSLYKIAGIRDVEVAETLGMEHP---VKYRNKAQVP 61
Query: 359 CK-LEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEI 417
+ + G+L + GF N + + + + P + E+
Sbjct: 62 VRRVNGVLET------------------------GFFRKNSHDLMPLEDFFIQDPMIDEV 97
Query: 418 ACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISE 477
++ L++ DL ++ + SG R L VR G G+ +
Sbjct: 98 VVA----LRDLLRRYDLKPYDEKEQSGLIRNLVVRRGHYSGQIM---------------- 137
Query: 478 VMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADA 537
+++ F V+ E+L K F P V+Q+ + A
Sbjct: 138 -VILVTTRPKVFR---VDQLIEQLIKQF-----------PEIVSVVQNINDQNTNAIFGK 182
Query: 538 PLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWA 597
R L G+ I D + F IS AF+QVNT AEKLY D+A
Sbjct: 183 DWRTLY-----GQD---------YITDQMLGNDFQISGPAFYQVNTEMAEKLYQTAIDFA 228
Query: 598 DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAK 657
+L D ++ D G GTIGL++A V V G+E+ AV ++ +NA INGI N +VC
Sbjct: 229 ELKGDDVVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKNASINGITNAHYVCDT 288
Query: 658 AEDVMGSLLKDYLNP 672
AE+ M + LK+ + P
Sbjct: 289 AENAMKNWLKEGIQP 303
>gi|422729316|ref|ZP_16785717.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0012]
gi|315150202|gb|EFT94218.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0012]
Length = 456
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 97/389 (24%), Positives = 156/389 (40%), Gaps = 87/389 (22%)
Query: 298 KSARDVVTP------------LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLP 345
K+A+D V P L H++Y QL+ KK+ + Q L K
Sbjct: 66 KAAKDRVVPPCPVYETCGGCQLQHLAYKAQLDFKKDLLKQALNKF--------------- 110
Query: 346 EWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAV 405
+ + +L +G YRNK +F + + + G + + V
Sbjct: 111 ------KPVNYQNYELRKTIGMENPWNYRNKAQFQLR-QIDGQVEAGLYQADSHQLV--- 160
Query: 406 EEPVD-CPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVE 464
P+D C K + + L LP+++ KNSG +R L VR G G
Sbjct: 161 --PIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTLMVRVGIQTG------ 212
Query: 465 NLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQ 524
EV ++ S F + E++ +A + LP ++Q
Sbjct: 213 ------------EVQVVFITQSKKF------PQKEKMVRAI-------NEQLPEVVSIMQ 247
Query: 525 DHQGV-SNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNT 583
+ Q +++ D L L +ES I + I+++ F +SP AFFQ+N
Sbjct: 248 NVQNKKTSLVMGDDTLHLWG--------KES-------IEEHINDVVFDLSPRAFFQLNP 292
Query: 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNA 643
E LY+ G DL P+ + D CG GTIGL+LA + V G++ +A+ DA NA
Sbjct: 293 EQTEILYNEGIKALDLQPNETVVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNA 352
Query: 644 EINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
+ G+ N + AED++ K+ P
Sbjct: 353 KRLGVTNTHYAVGTAEDLLPKWFKEGFKP 381
>gi|227519503|ref|ZP_03949552.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis TX0104]
gi|424677787|ref|ZP_18114638.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV103]
gi|424679462|ref|ZP_18116284.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV116]
gi|424684330|ref|ZP_18121049.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV129]
gi|424686125|ref|ZP_18122794.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV25]
gi|424690749|ref|ZP_18127278.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV31]
gi|424693725|ref|ZP_18130137.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV37]
gi|424698214|ref|ZP_18134513.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV41]
gi|424700962|ref|ZP_18137142.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV62]
gi|424705213|ref|ZP_18141296.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV63]
gi|424707619|ref|ZP_18143593.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV65]
gi|424716638|ref|ZP_18145944.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV68]
gi|424720113|ref|ZP_18149232.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV72]
gi|424723566|ref|ZP_18152527.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV73]
gi|424726624|ref|ZP_18155282.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV81]
gi|424735135|ref|ZP_18163607.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV85]
gi|424747516|ref|ZP_18175689.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV93]
gi|424757779|ref|ZP_18185507.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
R508]
gi|227073028|gb|EEI10991.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis TX0104]
gi|402353849|gb|EJU88672.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV103]
gi|402356810|gb|EJU91534.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV116]
gi|402361899|gb|EJU96443.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV129]
gi|402363346|gb|EJU97833.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV31]
gi|402367929|gb|EJV02261.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV25]
gi|402372753|gb|EJV06859.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV37]
gi|402373105|gb|EJV07195.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV62]
gi|402373189|gb|EJV07276.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV41]
gi|402379941|gb|EJV13717.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV63]
gi|402384136|gb|EJV17707.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV65]
gi|402387565|gb|EJV21040.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV68]
gi|402394573|gb|EJV27737.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV72]
gi|402397714|gb|EJV30712.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV73]
gi|402399192|gb|EJV32083.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV81]
gi|402404399|gb|EJV37018.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV85]
gi|402406244|gb|EJV38802.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
R508]
gi|402408838|gb|EJV41292.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV93]
Length = 456
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 97/389 (24%), Positives = 156/389 (40%), Gaps = 87/389 (22%)
Query: 298 KSARDVVTP------------LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLP 345
K+A+D V P L H++Y QL+ KK+ + Q L K
Sbjct: 66 KAAKDRVVPPCPVYETCGGCQLQHLAYKAQLDFKKDLLKQALNKF--------------- 110
Query: 346 EWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAV 405
+ + +L +G YRNK +F + + + G + + V
Sbjct: 111 ------KPVNYQNYELRKTIGMENPWNYRNKAQFQLR-QIDGQVEAGLYQADSHQLV--- 160
Query: 406 EEPVD-CPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVE 464
P+D C K + + L LP+++ KNSG +R L VR G G
Sbjct: 161 --PIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTLMVRVGIQTG------ 212
Query: 465 NLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQ 524
EV ++ S F + E++ +A + LP ++Q
Sbjct: 213 ------------EVQVVFITQSQKF------PQKEKMVRAI-------NEQLPEVVSIMQ 247
Query: 525 DHQGV-SNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNT 583
+ Q +++ D L L +ES I + I+++ F +SP AFFQ+N
Sbjct: 248 NVQNKKTSLVMGDDTLHLWG--------KES-------IEEHINDVVFDLSPRAFFQLNP 292
Query: 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNA 643
E LY+ G DL P+ + D CG GTIGL+LA + V G++ +A+ DA NA
Sbjct: 293 EQTEILYNEGIKALDLQPNETVVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNA 352
Query: 644 EINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
+ G+ N + AED++ K+ P
Sbjct: 353 KRLGVTNTHYAVGTAEDLLPKWFKEGFKP 381
>gi|423334719|ref|ZP_17312497.1| RNA methyltransferase [Lactobacillus reuteri ATCC 53608]
gi|337728240|emb|CCC03335.1| RNA methyltransferase [Lactobacillus reuteri ATCC 53608]
Length = 456
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 93/369 (25%), Positives = 142/369 (38%), Gaps = 74/369 (20%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ PL H+ Y QL+ K++ I ++L K + EI LP
Sbjct: 85 IAPLGHLKYEAQLKFKQHQIQELLAKAHLD-------------------EIEVLPT---- 121
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
+G YRNK + V ++ + GF V + + P + K
Sbjct: 122 -MGMDRPYHYRNKAQVPVK-MVRGQLETGFYKRGSHNLVPIEDFYIQDPEID----KAIV 175
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
+ ++ L+Q + ++ G R + VR G S M++A
Sbjct: 176 VIRDLLRQYHITPYDEQTGKGVIRTVMVRRGYY-------------------SHEMMVAL 216
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLS 543
V+ N++ + K G A P + I D + +N D L
Sbjct: 217 VT---------NTKRLPMEKQIVDGIVAGVPEVKSIVQNINDKR--TNRLLGDKNKTLWG 265
Query: 544 IPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDT 603
AD IHD + + F ISP +F+QVN E+LY D A L +
Sbjct: 266 ---AD------------EIHDQLLGIDFAISPLSFYQVNPQQTERLYQTAIDNAGLDGNQ 310
Query: 604 LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMG 663
+ D CG GTI L +A V G+E+ +A+ DA NA+ NGIKN +FV KAE+
Sbjct: 311 TVIDAYCGIGTISLAVAKHAKQVYGVEIVPAAIEDAKHNAKRNGIKNAKFVVGKAEEQFA 370
Query: 664 SLLKDYLNP 672
+ L P
Sbjct: 371 KWQAEGLKP 379
>gi|253681766|ref|ZP_04862563.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
D str. 1873]
gi|253561478|gb|EES90930.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
D str. 1873]
Length = 494
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 86/367 (23%), Positives = 158/367 (43%), Gaps = 72/367 (19%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
+ H +Y+ QLE K+N + L+++ + V++ S + + L LG
Sbjct: 112 IQHFNYNAQLEFKRNRVKDCLERIGKLK-------VTIDNEQENSNKKSTI---LHDTLG 161
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
YRNK + VG + +GF + + + C E+ K S+ +
Sbjct: 162 MENPYRYRNKVQLPVGEE-NGEIKIGFYAPRSHD----IIDMNICYIQDEVGDKVVSLAK 216
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
+++Q+ ++ +N KN+G R + +R G N +E+M++
Sbjct: 217 QWMQKYNIKPYNEEKNTGIVRHVMIRRG------------------FNTNEIMIVI---- 254
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLP----LTALVIQDHQGVSNVAPADAPLRLL 542
+ LP L L++++ GV+++ +
Sbjct: 255 -----------------------VTRTNELPHKKELIELILKNINGVTSIVQN------I 285
Query: 543 SIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
+ K + +N + + I D I +F ISP +FFQVN + E LY+ ++A L
Sbjct: 286 NTKKTNVVLGLNNITLYGKDYISDYIGEFKFNISPLSFFQVNPIQTEVLYNKALEYAALT 345
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
+ ++FD CGTGTI L L+ V G+E+ A+ +A NA+ N + N F+ K+E+
Sbjct: 346 GNEVVFDAYCGTGTISLFLSKNAKKVYGVEIVEDAIKNAKINAKENNVDNVEFIVGKSEE 405
Query: 661 VMGSLLK 667
V+ +L+K
Sbjct: 406 VIPNLIK 412
>gi|300766632|ref|ZP_07076549.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|300495732|gb|EFK30883.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
Length = 457
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 95/373 (25%), Positives = 151/373 (40%), Gaps = 82/373 (21%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ PL H+ YS QL+ K++ +A++ K+ + + P IG
Sbjct: 85 IAPLQHLEYSEQLKFKQHQVAELFAKVHMDDVEVLPT-------------IG-------- 123
Query: 364 ILGSPLVN--GYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKY 421
+VN YRNK + V +Q + T GF N + + + + P + K
Sbjct: 124 -----MVNPTQYRNKAQVPVR-QVQGQLTTGFYKKNSHQLMPIEDYYIQDPAID----KA 173
Query: 422 ASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLI 481
+ ++ L++ ++ F +SG R + VR G + + V+++
Sbjct: 174 IVVVRDILRKYHEAAYDEFHHSGTIRTIMVRRGYYSHEMM----------------VVIV 217
Query: 482 AQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRL 541
+ D VV E + +LP VIQ NV + L
Sbjct: 218 TRTKHLPMAD-VVTQEIQ--------------AALPEVVSVIQ------NVNSKKTNVIL 256
Query: 542 LSIPKADGEPEESNDVV--EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
+ N+V+ +A I D + L F IS +F+QVN EKLY L D A L
Sbjct: 257 GPV----------NNVLAGKATIDDQLLGLTFAISAQSFYQVNPQQTEKLYQLAIDQAGL 306
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659
+ + D G GTI LT+A V G+E+ +A+ +A +NA+ NGI N FV AE
Sbjct: 307 TGNETVIDAYSGIGTISLTMAQHAKQVYGVEIVPAAIDNARQNADKNGITNATFVLDSAE 366
Query: 660 DVMGSLLKDYLNP 672
M D + P
Sbjct: 367 KAMAKWQADGVKP 379
>gi|322389307|ref|ZP_08062867.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis
ATCC 903]
gi|321144051|gb|EFX39469.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis
ATCC 903]
Length = 452
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 105/417 (25%), Positives = 163/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDG----SGLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGE+ + G G E L + R + L H++Y QL
Sbjct: 33 ENALPGEVIRMRVLKVNKKIGYGKVEEYLEKSPHRNEELDLAYLRSGIADLGHLAYPEQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K + L K+ A + + +P LG YRNK
Sbjct: 93 KFKAKQVKDSLYKM------AGISDIDVPL-----------------TLGMDHPVQYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + + + + P + ++ + + F DL
Sbjct: 130 AQVPVR-RVNGQVETGFFRKNSHDLMPIEDFYIQDPVIDQVVLALRDLIRRF----DLKP 184
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS-ATFDDAVVN 495
++ + SG R L VR G G E+M+I + F V+
Sbjct: 185 YDEQEQSGLIRNLVVRRGHHSG------------------EIMVILVTTRPKVFR---VD 223
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
E+L K F P V+Q+ + A R+L G+
Sbjct: 224 QLIEQLIKQF-----------PAIKSVMQNINDQNTNAIFGKEWRVLY-----GQD---- 263
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
I D + F IS AF+QVNT AEKLY D+A+L D ++ D G GTI
Sbjct: 264 -----YITDQMLGNSFQISGPAFYQVNTEMAEKLYQTAIDFAELREDDVVIDAYSGIGTI 318
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL++A V V G+E+ AV ++ +NA +N I N +VC AE+ M + LK+ + P
Sbjct: 319 GLSVAKHVKEVYGVEVIPEAVENSQKNAALNNITNAHYVCDTAENAMKNWLKEGIQP 375
>gi|313896553|ref|ZP_07830102.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sp. oral
taxon 137 str. F0430]
gi|312974738|gb|EFR40204.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sp. oral
taxon 137 str. F0430]
Length = 457
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 99/363 (27%), Positives = 143/363 (39%), Gaps = 76/363 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLP-CKLEGIL 365
L H+SY QL K+ Q++ +T IG LP ++ L
Sbjct: 88 LQHLSYEAQLTAKR---LQVVDAMT---------------------HIGKLPHVPVKETL 123
Query: 366 GSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF 425
G+ YRNK +F VG Q + ++G F +G + + DC E A+
Sbjct: 124 GAASPWNYRNKMQFPVGIH-QGQ----IVVGCFAQGSHRIIDTEDCHIQREGNNALANAV 178
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
++ + + +PV+N + G R + R G+ E+M + +
Sbjct: 179 RDIVTKLRIPVYNEDTHRGILRHIVGRVGQG-------------------DELMAVIVTA 219
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
+ E R+ + LP + Q+ Q N LL
Sbjct: 220 AKELPR---KKELIRMMRE----------RLPQLVSIQQNIQTYRNNVVMGRDTVLLW-- 264
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
G+P I D++ L F ISP +FFQVNT A LY +ADL +
Sbjct: 265 ---GKPT---------IRDTLGKLSFHISPRSFFQVNTAQAAVLYEQALQYADLHGTETV 312
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
D CGTGTI L LA R V GIE+ A+ DA +NA NGIKN F+ VM SL
Sbjct: 313 IDAYCGTGTITLFLAQRAWNVYGIEIVRPAILDARKNACDNGIKNAEFIVGDTTAVMPSL 372
Query: 666 LKD 668
+
Sbjct: 373 YRQ 375
>gi|139473609|ref|YP_001128325.1| RNA methyltransferase [Streptococcus pyogenes str. Manfredo]
gi|134271856|emb|CAM30091.1| putative RNA methyltransferase [Streptococcus pyogenes str.
Manfredo]
Length = 462
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 98/417 (23%), Positives = 164/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLA----GDGSGLKVKSARDVVTPLAHMSYSVQL 316
++A+P E+ + G G E + + + R + L H++Y QL
Sbjct: 44 DNALPEEVIDMRVLKVNKNSGFGKVEAYHYLSPARNADVNLTYLRTGIADLGHLTYEDQL 103
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
KK + L K+ G+S +E +G YRNK
Sbjct: 104 TFKKKQVQDSLYKIA---------GIS--------------DVTVESTIGMTEPLAYRNK 140
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF + + + + + + + + ++ L++ D+
Sbjct: 141 AQVPVR-RVNGQLETGFFRKHSHDLIPISDYYIQDKEIDRLI----NFTRDLLRRFDIKP 195
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS-ATFDDAVVN 495
++ + +G R + VR G G E+ML+ + F V+
Sbjct: 196 YDETEQTGLLRNIVVRRGHYSG------------------EMMLVLVTTRPKVFR---VD 234
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
E++ +AF P +IQ N+ + +I D +
Sbjct: 235 QVIEKIVEAF-----------PAVVSIIQ------NINDKNTN----AIFGKDFKTLYGK 273
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
D I DS+ + IS +F+QVNT+ AEKLY ++DL D ++ D G GTI
Sbjct: 274 DT----ITDSMLGNNYAISAQSFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTI 329
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL+ A V V G+E+ +AV DA +NA +NGI N FV AE M + KD + P
Sbjct: 330 GLSFAKTVKAVYGVEVIEAAVRDAQQNAALNGITNAYFVADTAEHAMATWAKDGIKP 386
>gi|317470873|ref|ZP_07930254.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerostipes sp.
3_2_56FAA]
gi|316901700|gb|EFV23633.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerostipes sp.
3_2_56FAA]
Length = 452
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/307 (27%), Positives = 126/307 (41%), Gaps = 47/307 (15%)
Query: 360 KLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIA 418
K EGI GSP YRNK EFS G ++ P +G N + + DC V
Sbjct: 111 KWEGIKGSPKWWEYRNKMEFSFGDEVKGGPLALGMHKKNTFHDIVNI---TDCKIVDNDF 167
Query: 419 CKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEV 478
S + QS +++ + G+ R L +R S+VN +
Sbjct: 168 NLLVSCALNYFSQSGCDFYHKMSHEGYLRHLVIRR-----------------SDVNGDLL 210
Query: 479 MLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAP 538
+ I S A D + E SLPL+ + +G+ +
Sbjct: 211 INIVTTSQADVDMKPLAEEM---------------LSLPLSGSI----RGILHTVNDS-- 249
Query: 539 LRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWAD 598
L + +AD + E ++ I L+F ISP +FFQ N+L AE LY ++
Sbjct: 250 --LADVVQAD---QMETIYGEDFFYEEILGLKFKISPFSFFQTNSLGAEVLYETAREYVG 304
Query: 599 LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658
D ++FD+ GTGTI LA V+G+E+ AV A NA NG++NC F+
Sbjct: 305 ETKDKVIFDLYSGTGTIAQMLAPVAKKVVGVEIVEEAVEAARENAGFNGLENCEFIAGDV 364
Query: 659 EDVMGSL 665
V+ L
Sbjct: 365 LKVIDEL 371
>gi|154482861|ref|ZP_02025309.1| hypothetical protein EUBVEN_00557 [Eubacterium ventriosum ATCC
27560]
gi|149736289|gb|EDM52175.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium ventriosum
ATCC 27560]
Length = 463
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 70/108 (64%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I D I +++F ISP +FFQVN + EKLY+ ++ADL + +++D+ CG G+I L LA
Sbjct: 270 IEDYIGDVKFRISPLSFFQVNPVQTEKLYNKALEYADLTGNEMVWDLYCGIGSISLFLAK 329
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDY 669
+ V+G+E+ A++DA NA+INGI N F AEDV+ +++
Sbjct: 330 KAKQVLGVEIVPEAIADAKINAKINGINNAEFFVGAAEDVVTEYFENH 377
>gi|56807774|ref|ZP_00365630.1| COG2265: SAM-dependent methyltransferases related to tRNA
(uracil-5-)-methyltransferase [Streptococcus pyogenes
M49 591]
gi|209559589|ref|YP_002286061.1| RNA methyltransferase [Streptococcus pyogenes NZ131]
gi|209540790|gb|ACI61366.1| Putative RNA methyltransferase [Streptococcus pyogenes NZ131]
Length = 452
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 97/417 (23%), Positives = 164/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLA----GDGSGLKVKSARDVVTPLAHMSYSVQL 316
++A+P E+ + G G E + + + R + L H++Y QL
Sbjct: 33 DNALPEEVIDMRVLKVNKNSGFGKVEAYHYLSPARNADVNLTYLRTGIADLGHLTYEDQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
KK + L K+ G+S +E +G YRNK
Sbjct: 93 TFKKKQVQDSLYKIA---------GIS--------------DVTVESTIGMTEPLAYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF + + + + + + + + ++ L++ D+
Sbjct: 130 AQVPVR-RVNGQLETGFFRKHSHDLIPISDYYIQDKEIDRLI----NFTRDLLRRFDIKP 184
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS-ATFDDAVVN 495
++ + +G R + VR G G E+ML+ + F V+
Sbjct: 185 YDETEQTGLLRNIVVRRGHYSG------------------EMMLVLVTTRPKVFR---VD 223
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
E++ +AF P +IQ N+ + +I D +
Sbjct: 224 QVIEKIVEAF-----------PAVVSIIQ------NINDKNTN----AIFGKDFKTLYGK 262
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
D I DS+ + IS +F+QVNT+ AEKLY ++DL D ++ D G GTI
Sbjct: 263 DT----ITDSMLGNNYAISAQSFYQVNTIMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTI 318
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL+ A V V G+E+ +AV DA +NA +NGI N F+ AE M + KD + P
Sbjct: 319 GLSFAKTVKAVYGVEVIEAAVRDAQQNAALNGITNAYFIADTAEHAMATWAKDGIKP 375
>gi|336054526|ref|YP_004562813.1| tRNA (Uracil-5-)-methyltransferase [Lactobacillus kefiranofaciens
ZW3]
gi|333957903|gb|AEG40711.1| tRNA (Uracil-5-)-methyltransferase [Lactobacillus kefiranofaciens
ZW3]
Length = 460
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 96/365 (26%), Positives = 148/365 (40%), Gaps = 84/365 (23%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
LAH+SY QLE K+N++ + L RK P S K++ +
Sbjct: 91 LAHLSYDKQLEFKRNNMLESL-------RKYHPRNYS--------------KYKVKKTIA 129
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTA--VEEPVDCPNV---SEIACKY 421
+P YRNK ++ + + GN + G+ A +D P + SE K
Sbjct: 130 APDPWHYRNKAQYQIE----------DVRGNLKLGLFAPNSHHLIDLPKMPTQSEDTQKT 179
Query: 422 ASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLI 481
+ +++ +PV N FK+ + + VR+ SE
Sbjct: 180 ERAIKALIEKLHVPVANYFKHLPGIKTVVVRQ----------------------SEATKE 217
Query: 482 AQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQ-DHQGVSNVAPADAPLR 540
QV+ T D + N +PL ++Q DH V +V + +
Sbjct: 218 IQVTLITIDHKIKNL-------------------IPLAKEIMQLDH--VVSVYQNETEWQ 256
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
P+ G E + + +I + I +F +SP AFFQ+N + LYS + DL
Sbjct: 257 ---NPQVWGNKTEK-LLGKNQITEEILGKKFALSPRAFFQLNPVQTVNLYSEALKYLDLT 312
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
PD L D G GT+G+ A RV V+GIE AV DA N E+N +KN ++ E
Sbjct: 313 PDQTLIDAYSGVGTLGILAADRVKQVVGIETIPEAVRDAQHNVELNHVKNAEYIQGSTEK 372
Query: 661 VMGSL 665
V+ L
Sbjct: 373 VLPEL 377
>gi|331086752|ref|ZP_08335829.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 9_1_43BFAA]
gi|330409918|gb|EGG89353.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 9_1_43BFAA]
Length = 466
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 72/122 (59%)
Query: 559 EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLT 618
+ I D I N+++ ISP +F+QVN + EKLY ++A L + ++D+ CG GTI L
Sbjct: 265 DGYITDYIGNVKYQISPLSFYQVNPVQTEKLYKYALEYAGLTGEETVWDLYCGIGTISLF 324
Query: 619 LAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDE 678
LA + V G+E+ A+ DA +NAE+N +KN F KAE+++ + ++Y +
Sbjct: 325 LAQKAKQVYGVEIVPQAIEDAKQNAELNDMKNAEFFVGKAEEILPAYYENYAKEHPGQQA 384
Query: 679 HA 680
HA
Sbjct: 385 HA 386
>gi|251782756|ref|YP_002997059.1| hypothetical protein SDEG_1350 [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|242391386|dbj|BAH81845.1| hypothetical protein SDEG_1350 [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
Length = 453
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 102/418 (24%), Positives = 163/418 (38%), Gaps = 81/418 (19%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLA----GDGSGLKVKSARDVVTPLAHMSYSVQL 316
++A+PGE+ + G G E + V R + H++Y QL
Sbjct: 33 DNALPGEIIDMRVLKVNKNSGFGKVEAYQKLSPARNQAIDVTYLRTGIADFGHLAYEDQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K+ + L K+ A N V++ ++ IG + +PL YRNK
Sbjct: 93 RFKQKQVQDNLYKI------AGINDVTV------NQTIG---------MDNPL--AYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF + + V + + + + + +E L++ D+
Sbjct: 130 AQVPVR-RVNGQLETGFFRKHSHDLVPISDYYIQDKEIDRLI----NFTRELLRRFDVKP 184
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
++ +G R + VR G G E+ML+ +
Sbjct: 185 YDEKGQTGLIRHIVVRRGHYSG------------------EMMLVLVTTRP--------- 217
Query: 497 EFERLAKAFAAGATASS--PSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEES 554
K F S S P +IQ N+ + +I D +
Sbjct: 218 ------KVFRVDQVISKIVESFPAVVSIIQ------NINDKNTN----AIFGKDFKTLYG 261
Query: 555 NDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGT 614
D I DS+ F IS +F+QVNT+ AEKLY ++DL D ++ D G GT
Sbjct: 262 KDT----ITDSMLGNDFAISAQSFYQVNTVMAEKLYQTAIAFSDLSEDDVVIDAYSGIGT 317
Query: 615 IGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
IGL+ A V V G+E+ +AV DA +NA NGI N FV AE+ M + K+ + P
Sbjct: 318 IGLSFAKTVKAVYGVEVIEAAVKDAQQNAARNGITNVHFVADTAENAMATWAKEDIKP 375
>gi|403070842|ref|ZP_10912174.1| RNA methyltransferase [Oceanobacillus sp. Ndiop]
Length = 456
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 89/370 (24%), Positives = 147/370 (39%), Gaps = 80/370 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L HMSY +QLE K+N + ++KK+ + +P + I+G
Sbjct: 87 LQHMSYKLQLEMKQNQVKNVMKKIAH---------------------LDHVP--VHPIIG 123
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVT--AVEEPVDCPNVSEIACKYASI 424
YRNK + VG G ++ F + + +E C E +
Sbjct: 124 MDNPFHYRNKVQIPVG------EKNGELIAGFYQKRSHRILENTETCSIQDETINEMVKA 177
Query: 425 FQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQV 484
+E + + +N +SG R + VR G + N + V+L+ +
Sbjct: 178 TREIANRIGIKAYNEENHSGELRHIMVRTGFA----------------TNEAMVVLVTRS 221
Query: 485 SSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSI 544
+ + ++ ER P ++Q+ ++
Sbjct: 222 NKLPGKELIIQELTERF---------------PQIKSIVQN----------------INT 250
Query: 545 PKADGEPEESNDVV--EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPD 602
+ E V+ E I+D I ++ F IS +FFQVN + + LY ++A +G D
Sbjct: 251 QRTSVILGEKTKVLWGEEYIYDKIGDITFAISAKSFFQVNPVQTKALYDKALEYAKIGKD 310
Query: 603 TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
+ D CG GTI L LA + V GIE+ A++DA NA++NGI N F +AE VM
Sbjct: 311 DTVIDAYCGIGTISLFLAQKAKKVYGIEVVPEAINDAKNNAKLNGITNAEFSVGEAEKVM 370
Query: 663 GSLLKDYLNP 672
+ +NP
Sbjct: 371 PDWKEKGINP 380
>gi|397904320|ref|ZP_10505238.1| RNA methyltransferase, TrmA family [Caloramator australicus RC3]
gi|343179067|emb|CCC58137.1| RNA methyltransferase, TrmA family [Caloramator australicus RC3]
Length = 447
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/318 (26%), Positives = 136/318 (42%), Gaps = 52/318 (16%)
Query: 346 EWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGF-MLGNFREGVTA 404
E + K + G+ + GI SPL GYRNK EF+ G + K +G G F E +T
Sbjct: 96 EQVKKLLDEAGIKYEFLGIEKSPLEFGYRNKMEFTFGDD-EGKLALGLHKKGKFYEVITT 154
Query: 405 VEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVE 464
DC V + K + + ++P +++ + GF R L +R + +
Sbjct: 155 D----DCKIVHDDFNKILDATLSYFSKLNVPYYSKKTHEGFLRHLVLR------RAFNTN 204
Query: 465 NLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQ 524
L +NI S FD K + + + + ++
Sbjct: 205 QLLINI-----------VTTSQLIFD-----------FKEYVNMILSLNLEGKIMGILHT 242
Query: 525 DHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTL 584
+ +S+V +D L + I + I L+F I+ +FFQ N+
Sbjct: 243 INDSISDVVQSDKTEILYGVD---------------FIVEEILGLKFKITAFSFFQTNSK 287
Query: 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAE 644
AE+LYS+ D+A D ++FD+ GTGTI +A VIGIE+ AV A NA+
Sbjct: 288 GAERLYSVVRDFAGDTKDKIIFDLYSGTGTIAQIMAPVAKKVIGIEIVKEAVEAAKENAK 347
Query: 645 INGIKNCRFVCAKAEDVM 662
+N ++NC F+ A DV+
Sbjct: 348 LNNLENCEFI---AGDVL 362
>gi|418065222|ref|ZP_12702596.1| RNA methyltransferase, TrmA family [Geobacter metallireducens RCH3]
gi|373562400|gb|EHP88611.1| RNA methyltransferase, TrmA family [Geobacter metallireducens RCH3]
Length = 427
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 87/348 (25%), Positives = 148/348 (42%), Gaps = 73/348 (20%)
Query: 306 PLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGIL 365
PL M+Y QL K++ + + ++ + +A P ++ ++
Sbjct: 30 PLISMNYGAQLTLKRSLVEKEIRSFA--SLRAVP---------------------IDDVI 66
Query: 366 GSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF 425
SP YRN + V + ++ ++G +R V + CP + + + +
Sbjct: 67 SSPRPLQYRNSAKLVVAGTFKSP-----IIGIYRRNSHNVVDISACPLHNPLINRVVAAA 121
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
+E +++ +PV+N ++G R L VR G+ + V + AQ S
Sbjct: 122 KEGIRKGKVPVYNPRTDTGILRYLVVRVSEHTGRAM---------------AVFVTAQRS 166
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
+E LAK F A P L + + +G +AP D L
Sbjct: 167 Y---------NEIHHLAK-FVRQAV---PELDVAVQNVNTSEGNVILAPHDHFL------ 207
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
+ + ++E ++ +RF ISP +FFQVN+ +A +Y +W+ L + +
Sbjct: 208 ------TKDHAIIE-----ELAGIRFSISPRSFFQVNSGSARIIYEKVREWSALTGNEKV 256
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRF 653
D+ CG G I L LA V GIE +AV+DA RNA +NGI+NC F
Sbjct: 257 VDLYCGIGGISLFLAPGAQEVHGIEYVDAAVADAERNARLNGIRNCSF 304
>gi|289578782|ref|YP_003477409.1| TrmA family RNA methyltransferase [Thermoanaerobacter italicus Ab9]
gi|289528495|gb|ADD02847.1| RNA methyltransferase, TrmA family [Thermoanaerobacter italicus
Ab9]
Length = 450
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 127/296 (42%), Gaps = 48/296 (16%)
Query: 360 KLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFML-GNFREGVTAVEEPVDCPNVSEIA 418
K GI+ SP +GYRNK E++ G + +G G F E + + C V
Sbjct: 111 KFLGIVKSPKEHGYRNKMEYTFGKDKEGNAALGLHRKGRFYEVIMTDK----CNIVDGDF 166
Query: 419 CKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEV 478
K ++ ++ LP +++ + GF R L VR+ S
Sbjct: 167 IKALTLTFDYAINKRLPFYDKKTHEGFLRHLVVRKASK-------------------SRE 207
Query: 479 MLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAP 538
+L+ V++ + +F L + + S LV H + + A
Sbjct: 208 ILLNIVTTTQ-----LKHDFTELIEIYKNANFGSH-------LVGVLHTQNDSWSDAVVC 255
Query: 539 LRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWAD 598
RL + D EE I +L+F IS +FFQ N+ AEKLY ++A
Sbjct: 256 ERLEVLYGRDYLIEE------------ILDLKFKISAFSFFQTNSYGAEKLYETVREFAG 303
Query: 599 LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D ++FD+ GTGTIG+ +A VIGIE+ AV A NA++NG+KNC F+
Sbjct: 304 DVSDKIVFDLYSGTGTIGIIMAPMAKKVIGIELVEEAVMSARENAKLNGLKNCTFI 359
>gi|427393422|ref|ZP_18887200.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Alloiococcus otitis
ATCC 51267]
gi|425730640|gb|EKU93474.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Alloiococcus otitis
ATCC 51267]
Length = 458
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 91/354 (25%), Positives = 132/354 (37%), Gaps = 74/354 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLP-CKLEGIL 365
LAHMSY QL+ K+ + L R IG L +++ L
Sbjct: 89 LAHMSYPAQLKFKQGQVENAL------------------------RRIGNLTEVQVQETL 124
Query: 366 GSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF 425
G YRNK + V Q G + + + + P + + + I
Sbjct: 125 GMERPYHYRNKAQVPVRADAQGHLVTGAFRKKSHDLIPIEDFLIQDPVIDQTIIQVRQIL 184
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
+++ + +N KN+G R + VR G G + V+L+ +
Sbjct: 185 EKY----GVKAYNDRKNTGHIRHILVRRGHFTGDIM----------------VVLVTRTP 224
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
+V L A V Q V N+ P L L
Sbjct: 225 KLPHKQEIVGD---------------------LEATVAQLVSVVQNINPKKTNLVLGRKS 263
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
+ + D + NL F IS +FFQVN+ E LY D AD+ +
Sbjct: 264 QVLYRQDSYRD--------RVLNLEFNISHQSFFQVNSKQTESLYRTAIDLADIQAGDQI 315
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659
D CG GT+ L+LA V G+E+ AVSDA +NA++N IKN FV AKAE
Sbjct: 316 VDAYCGIGTLTLSLAKEADQVYGVEVVPQAVSDAIKNADLNQIKNVHFVQAKAE 369
>gi|242278181|ref|YP_002990310.1| RNA methyltransferase, TrmA family [Desulfovibrio salexigens DSM
2638]
gi|242121075|gb|ACS78771.1| RNA methyltransferase, TrmA family [Desulfovibrio salexigens DSM
2638]
Length = 465
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 133/297 (44%), Gaps = 54/297 (18%)
Query: 365 LGSPLVNGYRNKCEFS---VGYSLQAKPTVGFMLGNFREGV-TAVEEPVDCPNVSEIACK 420
L SPL GYRNK EFS +G SL+ LG R G T V CP + E
Sbjct: 127 LPSPLEYGYRNKMEFSFHGIGDSLK--------LGFKRRGSETDVLNISSCPLLPEQCAD 178
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
++ +++ +++ + R G+WR+L VR G+ + +++
Sbjct: 179 IPALVRDYCAHTNIGAY-RHNRGGYWRKLVVRFSHHSGE------MMIHLLTGPARSHHT 231
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLP-LTALVIQDHQGVSNVAPADAPL 539
I + FD+ +P L + V +G +++A +
Sbjct: 232 IKGLGKLLFDN------------------------IPQLKSFVHSTRKGRADLATGE--- 264
Query: 540 RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
RL+S+ + + E H S + + I+P AFFQ N+ AE LY + A
Sbjct: 265 RLISVTGQE-------HITETLTHADGSEVSYRITPNAFFQTNSKGAEVLYRKSSELAAP 317
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCA 656
D +++D+ CG+G IG+ +A VG +IGIE++ +V A NA +NG++N +++
Sbjct: 318 KADDVVWDLFCGSGGIGMFMAKDVGKMIGIEVSEESVQSAKDNAALNGLENTQYIVG 374
>gi|227554844|ref|ZP_03984891.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
faecalis HH22]
gi|312900324|ref|ZP_07759635.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0470]
gi|312904253|ref|ZP_07763415.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0635]
gi|422688162|ref|ZP_16746321.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0630]
gi|422713668|ref|ZP_16770417.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0309A]
gi|422716409|ref|ZP_16773116.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0309B]
gi|422721325|ref|ZP_16777917.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0017]
gi|422736313|ref|ZP_16792577.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1341]
gi|227176013|gb|EEI56985.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
faecalis HH22]
gi|310632349|gb|EFQ15632.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0635]
gi|311292512|gb|EFQ71068.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0470]
gi|315031445|gb|EFT43377.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0017]
gi|315166923|gb|EFU10940.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1341]
gi|315575356|gb|EFU87547.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0309B]
gi|315578799|gb|EFU90990.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0630]
gi|315581386|gb|EFU93577.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0309A]
Length = 504
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 119/501 (23%), Positives = 198/501 (39%), Gaps = 103/501 (20%)
Query: 178 HSDNLKKFLADHGILYKSAKKKKGMTVGF-VKFESVEQLKNAVEELEGISIGNKTLKVAN 236
H ++L FL + + KKK+ + + VK KN V E+E I + ++ L VA
Sbjct: 23 HENSLLLFLGIFIRMSEVYKKKERLMKNYPVK-------KNDVIEVEIIDLTHEGLGVAK 75
Query: 237 VVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGND-EGLAGDGSGL 295
V P+ + E+A+PGE E G G G L +
Sbjct: 76 VD--------HYPLFI--------ENALPGEKLEIKVLKTGKSFGYGKVLTVLKSSEQRV 119
Query: 296 KVKS---ARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSR 352
VK + ++PL H++Y QL K + ++++ + K +
Sbjct: 120 PVKDENFTKVGISPLQHLAYGAQLSFKTQQVENVMQR------------------VAKLQ 161
Query: 353 EIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCP 412
E+ LP +G YRNK + V + + GF N + + + P
Sbjct: 162 EVPVLPT-----IGMNDPWHYRNKAQIPVR-KIDNQLQTGFFRKNSHDLIPMEHFYIQDP 215
Query: 413 NVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISE 472
+ K I +++ + +N N+G R + VR G G+ +
Sbjct: 216 EIDAAIVKIRDIMRKY----SVKPYNESDNTGNLRHIVVRRGYHTGEMM----------- 260
Query: 473 VNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSN 531
V+LI + +V E ++P ++Q+ + +N
Sbjct: 261 -----VVLITRTPKLFPISKIVPDILE---------------AIPEVVSIVQNVNPKRTN 300
Query: 532 VAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYS 591
V D + L +I D+I +L+F IS +F+QVN E +Y
Sbjct: 301 VIFGDETILLHG---------------SEKITDTIFDLKFEISARSFYQVNPQQTEVMYQ 345
Query: 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNC 651
++A L + ++ D CG GTIGLTLA V GIE+ AV DA NA++N I+N
Sbjct: 346 KVKEYAALTGNEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENA 405
Query: 652 RFVCAKAEDVMGSLLKDYLNP 672
F AE+++ L+++ L P
Sbjct: 406 TFTAGLAEELLPKLVENGLQP 426
>gi|338795781|emb|CBX20734.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes]
Length = 464
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 98/417 (23%), Positives = 163/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLA----GDGSGLKVKSARDVVTPLAHMSYSVQL 316
++A+P E+ + G G E + + + R + L H++Y QL
Sbjct: 44 DNALPEEVIDMRVLKVNKNSGFGKVEAYHYLSPARNADVNLTYLRTGIADLGHLTYEDQL 103
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
KK + L K+ G+S +E +G YRNK
Sbjct: 104 TFKKKQVQDSLYKIA---------GIS--------------DVTVESTIGMTEPLAYRNK 140
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF + + + + + + + + ++ L++ D+
Sbjct: 141 AQVPVR-RVNGQLETGFFRKHSHDLIPISDYYIQDKEIDRLI----NFTRDLLRRFDIKP 195
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS-ATFDDAVVN 495
++ + +G R + VR G G E+ML+ + F V+
Sbjct: 196 YDETEQTGLLRNIVVRRGHYSG------------------EMMLVLVTTRPKVFR---VD 234
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
E++ +AF P +IQ+ + A I D +
Sbjct: 235 QVIEKIVEAF-----------PAVVSIIQNINDKNTNA----------IFGKDFKTLYGK 273
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
D I DS+ + IS +F+QVNT+ AEKLY ++DL D ++ D G GTI
Sbjct: 274 DT----ITDSMLGNNYAISAQSFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTI 329
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL+ A V V G+E+ +AV DA +NA +NGI N FV AE M + KD + P
Sbjct: 330 GLSFAKTVKAVYGVEVIEAAVRDAQQNAALNGITNAYFVADTAEHAMATWAKDGIKP 386
>gi|227543796|ref|ZP_03973845.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri CF48-3A]
gi|338203587|ref|YP_004649732.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri
SD2112]
gi|227186223|gb|EEI66294.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri CF48-3A]
gi|336448827|gb|AEI57442.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri
SD2112]
Length = 468
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 105/390 (26%), Positives = 150/390 (38%), Gaps = 91/390 (23%)
Query: 298 KSARDVVTP------------LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLP 345
K +RD VTP L +++Y QL+ K+ I L+K P G
Sbjct: 73 KKSRDRVTPRDEYADIAGGFELENLAYQQQLKFKRQVIIDSLEKFQ-------PYGY--- 122
Query: 346 EWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAV 405
R P + +P GYRNK +F + + K G N V
Sbjct: 123 ------RNYDVRPT-----IAAPEEYGYRNKAQFQIR-MVNGKVAAGLYQPNSHTLVDME 170
Query: 406 EEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVEN 465
V P E + ++ +PV++ NSG + L VRE S G
Sbjct: 171 TCAVQMPRTMETVRAVTKMIEDL----QIPVYDEKNNSGIIKTLAVRESWSTG------- 219
Query: 466 LEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQD 525
EV L +SA ER+ K LP V+Q
Sbjct: 220 -----------EVQLTFITNSAKLPHK--RELLERIEK-----------ELPAVVSVMQ- 254
Query: 526 HQGVSNVAPADAPL----RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQV 581
NV P D PL +++ + D I +S+ L F +S +F Q+
Sbjct: 255 -----NVNPGDTPLIWGDKMIHLAGKDS------------ILESLMGLDFKLSARSFLQL 297
Query: 582 NTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHR 641
N E LY +L D L D G GTIGL+LA RV V G+E+ AV+DA+
Sbjct: 298 NPEQTEVLYEEASKALELDKDDTLIDAYAGIGTIGLSLASRVKSVCGMEIIPEAVADANE 357
Query: 642 NAEINGIKNCRFVCAKAEDVMGSLLKDYLN 671
NA++N I N ++ KAE+V+ ++ LN
Sbjct: 358 NAKLNNITNAKYEVGKAEEVLPRWQEEGLN 387
>gi|167747772|ref|ZP_02419899.1| hypothetical protein ANACAC_02493 [Anaerostipes caccae DSM 14662]
gi|167653134|gb|EDR97263.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerostipes caccae
DSM 14662]
Length = 459
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 91/361 (25%), Positives = 143/361 (39%), Gaps = 79/361 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLP---CKLEG 363
L H+SY QLE+K N + L++ IGG+ +E
Sbjct: 84 LQHLSYEKQLEYKFNKVKNCLER------------------------IGGIENAGSFMEP 119
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
I G YRNK +F VG + K GF G + + P EI K
Sbjct: 120 IYGMDEPYYYRNKAQFPVGRNKAGKLITGFYAGRTHSIIDCTHCSIQHPVNEEILKK--- 176
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEV-NISEVM-LI 481
++++++ + ++ + G R + R G G+ + + E+ N+SE++ +
Sbjct: 177 -VLDYMERNHVEPYDEKNHRGLVRHIMTRVGFVTGEIMVCLVVNGRKKELPNLSELVESL 235
Query: 482 AQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRL 541
+V T VNS ER + S V P
Sbjct: 236 KEVEGMT--SICVNSNRERTNRIMG-----------------------SKVEEVYGP--- 267
Query: 542 LSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGP 601
A I+D I N+++ I P +FFQVN + LY ++A L
Sbjct: 268 ------------------AYIYDYIGNVKYQIGPLSFFQVNPRQTKVLYEKALEYAGLCG 309
Query: 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661
D ++D+ CG GTI L LA + V G+E+ A+ DA NA +N + N +F KAE+V
Sbjct: 310 DETVWDLYCGIGTISLFLAQKAKQVYGVEIVKEAIEDARLNARMNRMDNVKFFVGKAEEV 369
Query: 662 M 662
+
Sbjct: 370 L 370
>gi|440493183|gb|ELQ75685.1| tRNA uracil-5-methyltransferase, tRNA-modifying enzyme
[Trachipleistophora hominis]
Length = 490
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 114/452 (25%), Positives = 191/452 (42%), Gaps = 69/452 (15%)
Query: 365 LGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASI 424
L SP VN RN EF+ G++ Q +P VGF +F+ E + + E+ + ++
Sbjct: 21 LVSP-VNTQRNNFEFAFGFNAQGRPCVGFRGQSFKGNKNLCYECTNVEFIGELKQRIEAV 79
Query: 425 FQEFLQQSDLPVWNRFKNSGFWRQLTVR--EGRSPGKPLDVENLEVNISEVNISEVMLIA 482
E ++ + V++R K +G+ R + VR G +D++ N S+ N+ E I
Sbjct: 80 -DEMVKNCEWMVYDREKGTGYLRMMKVRVVNGNEHLVLVDIDG--SNESDRNVQECSGIV 136
Query: 483 QVSSA--------TFDDAVVNSE-FERLAKAFAAGATASSPS----LPLTAL-VIQDHQG 528
++ D A+VN E F L K+ G + LP T + ++ +
Sbjct: 137 DKTNHFSDHHARDKTDQAIVNYEHFYMLFKSCIDGHLQQLYNFLMNLPFTNVSLVFNRTK 196
Query: 529 VSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEK 588
++P + L I A + + I NL+F IS FFQ N E
Sbjct: 197 FEGISPGPS----LIIKGA------------SHLFQHIHNLKFKISFFTFFQTNI---EM 237
Query: 589 LYSLGGDWADLGPDT-LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEING 647
L ++ + + L D+CCG+ +G+ L VIG+E N V D + N ++N
Sbjct: 238 LIAIVEQIKAVKKNNPYLLDLCCGSLVLGMMLCSDYKEVIGVENNLECVKDFNVNRDVNE 297
Query: 648 IKNCRFV-----CAKAEDVMGSLLKDYLNPLREEDEHASEGSN-KEIT-------IAEEK 694
+KNCR + +++ S+LK+ + S+G N KE+ I+ +
Sbjct: 298 VKNCRIMGVDVNTVSVREIVRSILKE------KTASRVSDGLNEKELNGNGEGGMISSQN 351
Query: 695 DSSRDNVPENEGC--SGQDPENDIADSNCPEGSGKEPQSQLQKDCTSEG--NSLAQPFKN 750
S+ +N E C G+ ND N K + T+ N +N
Sbjct: 352 VSNEENQQSTEKCHIGGEIITNDRFAVN------KATDNTFATSYTTARLENETINREEN 405
Query: 751 VVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782
+ I+DPPR G++ +IK LR + L +I
Sbjct: 406 ITVILDPPRAGVNKRLIKKLRECTAIDELFYI 437
>gi|29375324|ref|NP_814478.1| RNA methyltransferase [Enterococcus faecalis V583]
gi|256617615|ref|ZP_05474461.1| RNA methyltransferase [Enterococcus faecalis ATCC 4200]
gi|256761497|ref|ZP_05502077.1| RNA methyltransferase [Enterococcus faecalis T3]
gi|257089155|ref|ZP_05583516.1| RNA methyltransferase [Enterococcus faecalis CH188]
gi|257418339|ref|ZP_05595333.1| RNA methyltransferase trmA [Enterococcus faecalis T11]
gi|50401543|sp|Q837V0.1|Y728_ENTFA RecName: Full=Uncharacterized RNA methyltransferase EF_0728
gi|29342784|gb|AAO80548.1| RNA methyltransferase, TrmA family [Enterococcus faecalis V583]
gi|256597142|gb|EEU16318.1| RNA methyltransferase [Enterococcus faecalis ATCC 4200]
gi|256682748|gb|EEU22443.1| RNA methyltransferase [Enterococcus faecalis T3]
gi|256997967|gb|EEU84487.1| RNA methyltransferase [Enterococcus faecalis CH188]
gi|257160167|gb|EEU90127.1| RNA methyltransferase trmA [Enterococcus faecalis T11]
Length = 457
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 99/417 (23%), Positives = 165/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGND-EGLAGDGSGLKVKS---ARDVVTPLAHMSYSVQL 316
E+A+PGE E G G G L + VK + ++PL H++Y QL
Sbjct: 37 ENALPGEKLEIKVLKTGKSFGYGKVLTVLKSSEQRVPVKDENFTKVGISPLQHLAYGAQL 96
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K + ++++ + K +E+ LP +G YRNK
Sbjct: 97 SFKTQQVENVMQR------------------VAKLQEVPVLPT-----IGMNDPWHYRNK 133
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + + + P + K I +++ +
Sbjct: 134 AQIPVR-KIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKY----SVKP 188
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
+N N+G R + VR G G+ + V+LI + +V
Sbjct: 189 YNESDNTGNLRHIVVRRGYHTGEMM----------------VVLITRTPKLFPISKIVPD 232
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLLSIPKADGEPEESN 555
E ++P ++Q+ + +NV D + L
Sbjct: 233 ILE---------------AIPEVVSIVQNVNPKRTNVIFGDETILLHG------------ 265
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
+I D+I +L+F IS +F+QVN E +Y ++A L + ++ D CG GTI
Sbjct: 266 ---SEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTI 322
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GLTLA V GIE+ AV DA NA++N I+N F AE+++ L+++ L P
Sbjct: 323 GLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEELLPKLVENGLQP 379
>gi|325663161|ref|ZP_08151611.1| hypothetical protein HMPREF0490_02352 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325470615|gb|EGC73845.1| hypothetical protein HMPREF0490_02352 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 464
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 82/149 (55%), Gaps = 15/149 (10%)
Query: 559 EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLT 618
+ I D I N+++ ISP +F+QVN + EKLY ++A L + ++D+ CG GTI L
Sbjct: 265 DGYITDYIGNVKYQISPLSFYQVNPVQTEKLYKYALEYAGLTGEETVWDLYCGIGTISLF 324
Query: 619 LAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDE 678
LA + V G+E+ A+ DA +NAE+N +KN F KAE+++ + ++Y E
Sbjct: 325 LAQKAKQVYGVEIVPQAIEDAKQNAELNDMKNAEFFVGKAEEILPAYYENYAK------E 378
Query: 679 HASEGSNKEITIAEEKDSSRDNVPENEGC 707
H + ++ ++ + + P +GC
Sbjct: 379 HPGQQAHADVIVVD---------PPRKGC 398
>gi|373125150|ref|ZP_09538987.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
bacterium 21_3]
gi|422329310|ref|ZP_16410336.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
bacterium 6_1_45]
gi|371657197|gb|EHO22503.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
bacterium 6_1_45]
gi|371657900|gb|EHO23188.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
bacterium 21_3]
Length = 443
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 95/369 (25%), Positives = 145/369 (39%), Gaps = 87/369 (23%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L HMSY+ QL KK + ++++ I L ++ +LG
Sbjct: 82 LQHMSYAEQLRFKKQKVQDVMQR------------------------IAHLDIEVRDVLG 117
Query: 367 -SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF 425
YRNK + VG + K GF +R A+ + C SE + ++
Sbjct: 118 MQDCYTNYRNKGQIPVGVE-KGKTVTGF----YRINSNAIIDTDTCLIQSE---RINAVL 169
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
QE + ++ +++N+ +R L ++ S EVM++ V
Sbjct: 170 QEMRK-----LFEKYQNAKLFRHLLIKHAFSS------------------DEVMVVWIVR 206
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLP--LTALVIQDHQGVSNVAPADAPLRLLS 543
S K TA+ P + + L ++D NV D L
Sbjct: 207 SFQIPHG----------KEMVQELTAALPFVKSVILNLNVRD----DNVILGDKEQLLFG 252
Query: 544 IPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDT 603
E I DSI +L+F IS +F+QVN E LY ++A L
Sbjct: 253 ---------------ERAITDSIHDLKFSISSKSFYQVNPRQTEILYGKALEFAQLTGKE 297
Query: 604 LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMG 663
+ D+ CG GTI + LA R V GIE+ A+ DA +NA +NGI N FVC+ A D
Sbjct: 298 TVLDLYCGVGTISMFLAQRAKHVTGIEIVPQAIRDARKNAALNGIANIEFVCSDAADYAK 357
Query: 664 SLLKDYLNP 672
L + +P
Sbjct: 358 KLCEQGAHP 366
>gi|363892557|ref|ZP_09319722.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacteriaceae
bacterium CM2]
gi|361963952|gb|EHL17015.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacteriaceae
bacterium CM2]
Length = 451
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 130/307 (42%), Gaps = 56/307 (18%)
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQ-AKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYA 422
++GSP+ Y+NK EF+ G + +G N + VE DC + E K
Sbjct: 116 VVGSPIQKEYKNKMEFTFGNEEKDGDLLIGLHRKNSSMSIVDVE---DCKIIDEDYRKIL 172
Query: 423 SIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIA 482
E+ ++ LP ++ + G+ R L +R+G + G+ L +NI
Sbjct: 173 KTTGEYFRKQGLPHYHIMSHEGYLRHLVIRKGINTGELL-----------INI------- 214
Query: 483 QVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALV--IQDHQGVSNVAPADAPLR 540
T S LT + + + + N+ L
Sbjct: 215 --------------------------VTTSQIDFDLTDYINILANIELNGNIV---GILH 245
Query: 541 LLSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWAD 598
L+ +D E +++ R +D + + +F ISP +FFQ NT AE +Y + D
Sbjct: 246 TLNDSFSDTVTPEKIEILYGRDYFYDILLDKKFKISPFSFFQTNTKGAEVMYKTAMNMID 305
Query: 599 LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658
G L+FD+ GTGTIG++++ R VIGIE+ AV A +NA N I+N F+
Sbjct: 306 -GEKNLIFDLYSGTGTIGISMSQRAKKVIGIEIIEEAVEMAKKNAIANNIRNVEFIAGDV 364
Query: 659 EDVMGSL 665
++ + L
Sbjct: 365 KEEVSKL 371
>gi|256854405|ref|ZP_05559769.1| RNA methyltransferase [Enterococcus faecalis T8]
gi|384512429|ref|YP_005707522.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus faecalis
OG1RF]
gi|422727951|ref|ZP_16784372.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0012]
gi|256709965|gb|EEU25009.1| RNA methyltransferase [Enterococcus faecalis T8]
gi|315151570|gb|EFT95586.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0012]
gi|327534318|gb|AEA93152.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus faecalis
OG1RF]
Length = 468
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 100/417 (23%), Positives = 166/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGND-EGLAGDGSGLKVKS---ARDVVTPLAHMSYSVQL 316
E+A+PGE E G G G L + VK + ++PL H++Y QL
Sbjct: 48 ENALPGEKLEIKVLKTGKSFGYGKVLTVLKSSEQRVPVKDENFTKVGISPLQHLAYGAQL 107
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K + +++++ + LPE + LP +G YRNK
Sbjct: 108 SFKTQQVENVMQRVAK-----------LPE-------VPVLPT-----IGMNDPWHYRNK 144
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + + + P + K I +++ +
Sbjct: 145 AQIPVR-KIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKY----SVKP 199
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
+N N+G R + VR G G+ + V+LI + +V
Sbjct: 200 YNESDNTGNLRHIVVRRGYHTGEMM----------------VVLITRTPKLFPISKIVPD 243
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLLSIPKADGEPEESN 555
E ++P ++Q+ + +NV D + L
Sbjct: 244 ILE---------------AIPEVVSIVQNVNPKRTNVIFGDETILLHG------------ 276
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
+I D+I +L+F IS +F+QVN E +Y ++A L + ++ D CG GTI
Sbjct: 277 ---SEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTI 333
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GLTLA V GIE+ AV DA NA++N I+N F AE+++ L+++ L P
Sbjct: 334 GLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEELLPKLVENGLQP 390
>gi|421893382|ref|ZP_16323903.1| 23S rRNA (Uracil-5-)-methyltransferase RumA ## LSU rRNA m(5)U1939
[Streptococcus pyogenes NS88.2]
gi|379980871|emb|CCG27625.1| 23S rRNA (Uracil-5-)-methyltransferase RumA ## LSU rRNA m(5)U1939
[Streptococcus pyogenes NS88.2]
Length = 452
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 98/417 (23%), Positives = 163/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLA----GDGSGLKVKSARDVVTPLAHMSYSVQL 316
++A+P E+ + G G E + + + R + L H++Y QL
Sbjct: 33 DNALPEEVIDMRVLKVNKNSGFGKVEAYHYLSPARNADVNLTYLRTGIADLGHLTYEDQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
KK + L K+ G+S +E +G YRNK
Sbjct: 93 TFKKKQVQDSLYKIA---------GIS--------------DVTVESTIGMTEPLAYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF + + + + + + + + ++ L++ D+
Sbjct: 130 AQVPVR-RVNGQLETGFFRKHSHDLIPISDYYIQDKEIDRLI----NFTRDLLRRFDIKP 184
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS-ATFDDAVVN 495
++ + +G R + VR G G E+ML+ + F V+
Sbjct: 185 YDETEQTGLLRNIVVRRGHYSG------------------EMMLVLVTTRPKVFR---VD 223
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
E++ +AF P +IQ N+ + +I D +
Sbjct: 224 QVIEKIVEAF-----------PAVVSIIQ------NINDKNTN----AIFGKDFKTLYGK 262
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
D I DS+ + IS +F+QVNT+ AEKLY ++DL D ++ D G GTI
Sbjct: 263 DT----ITDSMLGNNYAISAQSFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTI 318
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL+ A V V G+E+ +AV DA NA +NGI N FV AE M + KD + P
Sbjct: 319 GLSFAKTVKAVYGVEVIEAAVRDAQHNAALNGITNAYFVADTAEHAMATWAKDGIKP 375
>gi|94994593|ref|YP_602691.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes
MGAS10750]
gi|94548101|gb|ABF38147.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes
MGAS10750]
gi|332001949|gb|AED99120.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes]
Length = 463
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 91/373 (24%), Positives = 150/373 (40%), Gaps = 75/373 (20%)
Query: 301 RDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCK 360
R + L H++Y QL KK + L K+ G+S
Sbjct: 88 RTGIADLGHLTYEDQLTFKKKQVQDSLYKIA---------GIS--------------DVT 124
Query: 361 LEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
+E +G YRNK + V + + GF + + + + + + +
Sbjct: 125 VESTIGMTEPLAYRNKAQVPVR-RVNGQLETGFFRKHSHDLIPISDYYIQDKEIDRLI-- 181
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
+ ++ L++ D+ ++ + +G R + VR G G E+ML
Sbjct: 182 --NFTRDLLRRFDIKPYDETEQTGLLRNIVVRRGHYSG------------------EMML 221
Query: 481 IAQVSS-ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL 539
+ + F V+ E++ +AF P +IQ N+ +
Sbjct: 222 VLVTTRPKVFR---VDQVIEKIVEAF-----------PAVVSIIQ------NINDKNTN- 260
Query: 540 RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
+I D + D I DS+ + IS +F+QVNT+ AEKLY ++DL
Sbjct: 261 ---AIFGKDFKTLYGKDT----ITDSMLGNNYAISAQSFYQVNTIMAEKLYQTAIAFSDL 313
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659
D ++ D G GTIGL+ A V V G+E+ +AV DA +NA +NGI N F+ AE
Sbjct: 314 SKDDIVIDAYSGIGTIGLSFAKTVKAVYGVEVIEAAVRDAQQNAALNGITNAYFIADTAE 373
Query: 660 DVMGSLLKDYLNP 672
M + KD + P
Sbjct: 374 HAMATWAKDGIKP 386
>gi|148665094|gb|EDK97510.1| HpaII tiny fragments locus 9c, isoform CRA_d [Mus musculus]
Length = 375
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 82/157 (52%), Gaps = 3/157 (1%)
Query: 297 VKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGG 356
V DVVTPL + Y+ QLE K+ ++L+KL + N LP +++ ++
Sbjct: 166 VTQIADVVTPLWTVPYTEQLEQKRLECERVLQKLAKEIGNT--NRALLPWLLLQRQQHNK 223
Query: 357 LPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVS 415
C LEG+ SP YRNKCEF VG + K TVG LG ++ G AV P D ++
Sbjct: 224 ACCPLEGVKPSPQQTEYRNKCEFLVGVGVDGKDNTVGCRLGKYKGGTCAVAAPFDTVHIP 283
Query: 416 EIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVR 452
E + FQEF++ + ++ +G W+QLTVR
Sbjct: 284 EATKQVVKAFQEFIRSTPYSAYDPETYTGHWKQLTVR 320
>gi|357636080|ref|ZP_09133955.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus macacae
NCTC 11558]
gi|357584534|gb|EHJ51737.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus macacae
NCTC 11558]
Length = 451
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 99/416 (23%), Positives = 152/416 (36%), Gaps = 77/416 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDG----SGLKVKSARDVVTPLAHMSYSVQL 316
E+A+P E G G E L + R + L H+ Y QL
Sbjct: 33 ENALPTEKIHMRVLKVKKRIGFGKVEAFIKMSDQRQKKLNLTYLRTGIADLGHLKYPAQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K+ + L K+ A V +P LG + YRNK
Sbjct: 93 AFKRQQVQNSLSKI------AGITDVDVPL-----------------TLGMEVPFAYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V ++ + GF N + V + + + + +F+ F DL
Sbjct: 130 AQVPVR-RIKGQLETGFFRKNSHDLVPIEDFWIQDKEIDRLILYVRDLFRRF----DLKP 184
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
++ + +G R + VR G G ++ML+ S +
Sbjct: 185 YDEKEQTGLIRHILVRRGHYTG------------------QLMLVLVTSRPKIFR--IEQ 224
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESND 556
E++ +AF P +IQ+ + R L ND
Sbjct: 225 MIEKIVEAF-----------PAVKSIIQNINDQNTNTILGEEFRTLY----------GND 263
Query: 557 VVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIG 616
RI D + R+ IS +F+QVNT AEKLY ++AD+ D ++ D G GTIG
Sbjct: 264 ----RIEDIMLGNRYAISAQSFYQVNTAMAEKLYEKAIEFADVSEDAVVIDAYSGIGTIG 319
Query: 617 LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
L+ A +V V G+E+ AV DA NA +NGI N + AE M + + P
Sbjct: 320 LSFAKQVKAVYGVEIVKEAVQDARENAVLNGISNAVYTANSAEKAMAQWSNENIQP 375
>gi|307289579|ref|ZP_07569523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0109]
gi|422703956|ref|ZP_16761772.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1302]
gi|306499393|gb|EFM68766.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0109]
gi|315164578|gb|EFU08595.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1302]
Length = 504
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 120/501 (23%), Positives = 199/501 (39%), Gaps = 103/501 (20%)
Query: 178 HSDNLKKFLADHGILYKSAKKKKGMTVGF-VKFESVEQLKNAVEELEGISIGNKTLKVAN 236
H ++L FL + + KKK+ + + VK KN V E+E I + ++ L VA
Sbjct: 23 HENSLLLFLGIFIRMSEVYKKKERLMKNYPVK-------KNDVIEVEIIDLTHEGLGVAK 75
Query: 237 VVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGND-EGLAGDGSGL 295
V P+ + E+A+PGE E G G G L +
Sbjct: 76 VD--------HYPLFI--------ENALPGEKLEIKVLKTGKSFGYGKVLTVLKSSEQRV 119
Query: 296 KVKS---ARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSR 352
VK + ++PL H++Y QL K + +++++ + LPE
Sbjct: 120 PVKDENFTKVGISPLQHLAYGAQLSFKTQQVENVMQRVAK-----------LPE------ 162
Query: 353 EIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCP 412
+ LP +G YRNK + V + + GF N + + + P
Sbjct: 163 -VPVLPT-----IGMNDPWHYRNKAQIPVR-KIDNQLQTGFFRKNSHDLIPMEHFYIQDP 215
Query: 413 NVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISE 472
+ K I +++ + +N N+G R + VR G G+ +
Sbjct: 216 EIDAAIVKIRDIMRKY----SVKPYNESDNTGNLRHIVVRRGYHTGEMM----------- 260
Query: 473 VNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSN 531
V+LI + +V E ++P ++Q+ + +N
Sbjct: 261 -----VVLITRTPKLFPISKIVPDILE---------------AIPEVVSIVQNVNPKRTN 300
Query: 532 VAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYS 591
V D + L +I D+I +L+F IS +F+QVN E +Y
Sbjct: 301 VIFGDETILLHG---------------SEKITDTIFDLKFEISARSFYQVNPQQTEVMYQ 345
Query: 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNC 651
++A L + ++ D CG GTIGLTLA V GIE+ AV DA NA++N I+N
Sbjct: 346 KVKEYAALTGNEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENA 405
Query: 652 RFVCAKAEDVMGSLLKDYLNP 672
F AE+++ L+++ L P
Sbjct: 406 TFTAGLAEELLPKLVENGLQP 426
>gi|422727317|ref|ZP_16783759.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0312]
gi|315157726|gb|EFU01743.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0312]
Length = 504
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 120/501 (23%), Positives = 199/501 (39%), Gaps = 103/501 (20%)
Query: 178 HSDNLKKFLADHGILYKSAKKKKGMTVGF-VKFESVEQLKNAVEELEGISIGNKTLKVAN 236
H ++L FL + + KKK+ + + VK KN V E+E I + ++ L VA
Sbjct: 23 HENSLLLFLGIFIRMSEVYKKKERLMKNYPVK-------KNDVIEVEIIDLTHEGLGVAK 75
Query: 237 VVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGND-EGLAGDGSGL 295
V P+ + E+A+PGE E G G G L +
Sbjct: 76 VD--------HYPLFI--------ENALPGEKLEIKVLKTGKSFGYGKVLTVLKSSEQRV 119
Query: 296 KVKS---ARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSR 352
VK + ++PL H++Y QL K + +++++ + LPE
Sbjct: 120 PVKDENFTKVGISPLQHLAYGAQLSFKTQQVENVMQRVAK-----------LPE------ 162
Query: 353 EIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCP 412
+ LP +G YRNK + V + + GF N + ++ + P
Sbjct: 163 -VPVLPT-----IGMNDPWHYRNKAQIPVR-KIDNQLQTGFFRKNSHDLISMEHFYIQDP 215
Query: 413 NVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISE 472
+ K I +++ + +N N+G R + VR G G+ +
Sbjct: 216 EIDAAIVKIRDIMRKY----SVKPYNESDNTGNLRHIVVRRGYHTGEMM----------- 260
Query: 473 VNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSN 531
V+LI + +V E ++P ++Q+ + +N
Sbjct: 261 -----VVLITRTPKLFPISKIVPDILE---------------AIPEVVSIVQNVNPKRTN 300
Query: 532 VAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYS 591
V D + L +I D+I +L+F IS +F+QVN E +Y
Sbjct: 301 VIFGDETILLHG---------------SEKITDTIFDLKFEISARSFYQVNPQQTEVMYQ 345
Query: 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNC 651
++A L + ++ D CG GTIGLTLA V GIE+ AV DA NA++N I+N
Sbjct: 346 KVKEYAALTGNEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENA 405
Query: 652 RFVCAKAEDVMGSLLKDYLNP 672
F AE+++ L++ L P
Sbjct: 406 TFTAGLAEELLPKLVEKGLQP 426
>gi|254977015|ref|ZP_05273487.1| putative RNA methyltransferase [Clostridium difficile QCD-66c26]
gi|255651934|ref|ZP_05398836.1| putative RNA methyltransferase [Clostridium difficile QCD-37x79]
gi|306521684|ref|ZP_07408031.1| putative RNA methyltransferase [Clostridium difficile QCD-32g58]
Length = 544
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 87/360 (24%), Positives = 145/360 (40%), Gaps = 75/360 (20%)
Query: 310 MSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLP-CKLEGILGSP 368
+ Y+ QLE K N + Q+L + IG L ++ +G
Sbjct: 87 LDYNKQLEMKTNEVKQVLSR------------------------IGKLEDVEVHDTIGMD 122
Query: 369 LVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEF 428
YRNK +F + + P +GF +++ V C EI K I + +
Sbjct: 123 NPYRYRNKAQFPIQKN-NGIPIIGF----YKKKTHDVISTEKCVIQHEINDKIVKIIKTY 177
Query: 429 LQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSAT 488
++ + +++ ++G R L + G + EVM++
Sbjct: 178 IRAYKVSIYDEKTHTGLIRHLVTKIGFTT------------------KEVMVVL------ 213
Query: 489 FDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKAD 548
V N K A+ + P LV+ +Q +N + + D
Sbjct: 214 ----VANGNKLPYLKELASVLKENIPGFK--TLVVNVNQKDTNAILGRENIVIY----GD 263
Query: 549 GEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDV 608
G +I+D I +L F ISP +FFQVN + + LY ++A+L +FD+
Sbjct: 264 G-----------KINDYIGDLVFEISPLSFFQVNPVQTKVLYDKALEYANLNDTDTVFDI 312
Query: 609 CCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
CG GTI L LA + V GIE+ A+ DA NA++N I N F KAE+++ + ++
Sbjct: 313 YCGIGTISLFLAQKAKKVYGIEIIDDAIKDAKINAKLNNIHNAEFYVGKAEEIVPKMYRE 372
>gi|357239688|ref|ZP_09127022.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus ictaluri
707-05]
gi|356751444|gb|EHI68596.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus ictaluri
707-05]
Length = 456
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 102/416 (24%), Positives = 163/416 (39%), Gaps = 77/416 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDG----SGLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGE E G G E L V R + H++YS QL
Sbjct: 33 ENALPGEEIEMRVLKVNKNSGFGKVENYLSQSPSRHQDLDVAYLRTGIADFGHLAYSEQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K + L K+ G+S ++ +G YRNK
Sbjct: 93 KFKAKQVTDNLYKIA---------GIS--------------DVQVMDTIGMENPFAYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF FR+ + D + + + ++ L++ D+
Sbjct: 130 AQVPVR-RVNGQLETGF----FRKHSHDLLPISDFYIQDKEIDRLVNFVRDLLRRFDVKP 184
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
++ + +G R + VR G G+ + ++L+ D V+N
Sbjct: 185 YDEKEQTGLIRNIVVRRGHYSGEMM----------------LILVTTCPKVFRVDQVIN- 227
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESND 556
++ AF P +IQ+ + A + L G+
Sbjct: 228 ---QITSAF-----------PEVVSIIQNINDKNTNAIFGKEFKTLY-----GKDT---- 264
Query: 557 VVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIG 616
I DS+ + IS +F+QVNT+ AEKLY D+++L D ++ D G GTIG
Sbjct: 265 -----IADSMLGNTYEISAQSFYQVNTVMAEKLYQTAIDFSELSKDDVVIDAYSGIGTIG 319
Query: 617 LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
L+ A V V G+E+ AV DA +NAE+NGIKN +FV AE M K+ + P
Sbjct: 320 LSFAKSVKKVYGVEVIEQAVLDARKNAELNGIKNVQFVTDTAEAAMEKWTKEGIKP 375
>gi|257888569|ref|ZP_05668222.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,141,733]
gi|424763200|ref|ZP_18190679.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX1337RF]
gi|431030918|ref|ZP_19490627.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1590]
gi|431758489|ref|ZP_19547116.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E3083]
gi|431763963|ref|ZP_19552510.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E3548]
gi|257824623|gb|EEV51555.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,141,733]
gi|402423011|gb|EJV55231.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX1337RF]
gi|430565093|gb|ELB04263.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1590]
gi|430617547|gb|ELB54420.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E3083]
gi|430621419|gb|ELB58181.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E3548]
Length = 460
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 94/367 (25%), Positives = 146/367 (39%), Gaps = 71/367 (19%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H++Y QL+ KK+ + Q L+K P G R LP +G
Sbjct: 87 LQHLAYQAQLDFKKDLLLQALEKFK-------PAGF---------RSYQLLPT-----IG 125
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPT-VGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF 425
YRNK +F + + Q + T G N + V + V P ++ +
Sbjct: 126 MDDPWHYRNKAQFQLRKNKQTQKTEAGLYEANSHQLVPITDCLVQEPRTQKVMNTVVQLL 185
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
+F D P+++ NSG +R + VR G G+ +V+ I +
Sbjct: 186 NKF----DAPIYDERTNSGIFRTIMVRIGVKTGE----------------LQVVFITRSK 225
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
+A++ ERL + + + T+LV+ D +V +A
Sbjct: 226 KFPQKNAMIREINERLPEVVSIMQNVQAQK---TSLVMGDE--TIHVWGKEA-------- 272
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
I + I+ + F +SP AFFQ+N E LY G PD +
Sbjct: 273 ----------------IEEQINEVTFDLSPRAFFQLNPQQTELLYGEGIKALGAQPDETI 316
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
D CG GTIGL++A +V V G++ A++DA RNAE G N R+ AE V+
Sbjct: 317 VDAYCGVGTIGLSVAKKVKEVRGMDTVPQAIADAKRNAERLGYHNTRYEVGTAEQVLPKW 376
Query: 666 LKDYLNP 672
L + P
Sbjct: 377 LNEGFQP 383
>gi|160933690|ref|ZP_02081078.1| hypothetical protein CLOLEP_02551 [Clostridium leptum DSM 753]
gi|156867567|gb|EDO60939.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium leptum DSM
753]
Length = 460
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 65/106 (61%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I D + L F +SP +F+QVN AE LY L G++A L + + D+ CGTGTIG+T+A
Sbjct: 268 IVDHLCGLSFFLSPLSFYQVNRDQAEILYRLAGEYASLQKEDTVLDLYCGTGTIGMTMAS 327
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLK 667
+ G VIG+E+ A+ DA NA NG+KN F+C + + L K
Sbjct: 328 KAGKVIGVEVVPEAIEDAKANAVRNGVKNIEFICGDSAQAVQMLRK 373
Score = 45.8 bits (107), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 67/151 (44%), Gaps = 29/151 (19%)
Query: 309 HMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSP 368
H+SY +LE K+ + ++++ R P ++G+
Sbjct: 87 HISYKAELEAKRRRVEDAIQRIGGFDRFPVPP-----------------------VVGAA 123
Query: 369 LVNGYRNKCEFSVGYSLQAKPTVGFM-LGNFREGVTAVEEPVDCPNVSEIACKYASIFQE 427
+N YRNK + +G + +GF L + R + +E DCP ++ + + ++
Sbjct: 124 KINRYRNKAQLPIGADRDGRGIMGFYALHSHR--IVPIE---DCPLQPKMFAQAVASVKQ 178
Query: 428 FLQQSDLPVWNRFKNSGFWRQLTVREGRSPG 458
++++ +PV++ +SG R L +RE + G
Sbjct: 179 WMEEYKVPVYHEESHSGLLRHLYLREASATG 209
>gi|307269782|ref|ZP_07551112.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX4248]
gi|307272542|ref|ZP_07553795.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0855]
gi|422709344|ref|ZP_16766800.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0027]
gi|422868001|ref|ZP_16914563.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1467]
gi|306510827|gb|EFM79844.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0855]
gi|306513892|gb|EFM82494.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX4248]
gi|315036107|gb|EFT48039.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0027]
gi|329576886|gb|EGG58371.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1467]
Length = 468
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 100/417 (23%), Positives = 166/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGND-EGLAGDGSGLKVKS---ARDVVTPLAHMSYSVQL 316
E+A+PGE E G G G L + VK + ++PL H++Y QL
Sbjct: 48 ENALPGEKLEIKVLKTGKSFGYGKVLTVLKSSEQRVPVKDENFTKVGISPLQHLAYGAQL 107
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K + +++++ + LPE + LP +G YRNK
Sbjct: 108 SFKTQQVENVMQRVAK-----------LPE-------VPVLPT-----IGMNDPWHYRNK 144
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + + + P + K I +++ +
Sbjct: 145 AQIPVR-KIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKY----SVKP 199
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
+N N+G R + VR G G+ + V+LI + +V
Sbjct: 200 YNESDNTGNLRHIVVRRGYHTGEMM----------------VVLITRTPKLFPISKIVPD 243
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLLSIPKADGEPEESN 555
E ++P ++Q+ + +NV D + L
Sbjct: 244 ILE---------------AIPEVVSIVQNVNPKRTNVIFGDETILLHG------------ 276
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
+I D+I +L+F IS +F+QVN E +Y ++A L + ++ D CG GTI
Sbjct: 277 ---SEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTI 333
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GLTLA V GIE+ AV DA NA++N I+N F AE+++ L+++ L P
Sbjct: 334 GLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEELLPKLVENGLQP 390
>gi|306827133|ref|ZP_07460425.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes ATCC
10782]
gi|304430686|gb|EFM33703.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes ATCC
10782]
Length = 462
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 98/417 (23%), Positives = 163/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLA----GDGSGLKVKSARDVVTPLAHMSYSVQL 316
++A+P E+ + G G E + + + R + L H++Y QL
Sbjct: 44 DNALPEEVIDMRVLKVNKNSGFGKVEAYHYLSPARNADVNLTYLRTGIADLGHLTYEDQL 103
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
KK + L K+ G+S +E +G YRNK
Sbjct: 104 TFKKKQVQDSLYKIA---------GIS--------------DVTVESTIGMTEPLAYRNK 140
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF + + + + + + + + ++ L++ D+
Sbjct: 141 AQVPVR-RVNGQLETGFFRKHSHDLIPISDYYIQDKEIDRLI----NFTRDLLRRFDIKP 195
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS-ATFDDAVVN 495
++ + +G R + VR G G E+ML+ + F V+
Sbjct: 196 YDETEQTGLLRNIVVRRGHYSG------------------EMMLVLVTTRPKVFR---VD 234
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
E++ +AF P +IQ N+ + +I D +
Sbjct: 235 QVIEKIVEAF-----------PAVVSIIQ------NINDKNTN----AIFGKDFKTLYGK 273
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
D I DS+ + IS +F+QVNT+ AEKLY ++DL D ++ D G GTI
Sbjct: 274 DT----ITDSMLGNNYAISAQSFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTI 329
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL+ A V V G+E+ +AV DA NA +NGI N FV AE M + KD + P
Sbjct: 330 GLSFAKTVKAVYGVEVIEAAVRDAQHNAALNGITNAYFVADTAEHAMATWAKDGIKP 386
>gi|373106223|ref|ZP_09520526.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Stomatobaculum longum]
gi|371652598|gb|EHO18006.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Stomatobaculum longum]
Length = 457
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/304 (26%), Positives = 126/304 (41%), Gaps = 46/304 (15%)
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTA-VEEPVDCPNVSEIACK 420
EG+ SPL GYR K E+S G + + P LG + G + E C V E
Sbjct: 114 EGLTPSPLAEGYRMKMEYSFGDAYRDGP---LCLGMHKRGSHYDIVETDHCELVHEDFNL 170
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
F ++ + P +++ ++ G+ R L VR G + E++L
Sbjct: 171 ALRETLRFFREHNTPYYHKMRHEGYLRYLLVRRG------------------THRKELLL 212
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
D V +S+ + + A Q G+ A L
Sbjct: 213 ----------DLVTSSQLPKEEEEELLTAWR------------QRMVGLPFAATLKGVLH 250
Query: 541 LLSIPKADGEPEESNDVV--EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWAD 598
++ AD +E +V+ A+ + +S LRF I+P +FFQ N AE LY+ G +
Sbjct: 251 TVTDSVADAIKDERTEVLFGAAQFEEELSGLRFVITPFSFFQNNADGAELLYAKVGQYVG 310
Query: 599 LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658
++FD+ GTGTI +A +G+E+ AV A NA NG++NCRF+
Sbjct: 311 ETGGKVVFDLYSGTGTIAQLVAKHAERTVGVELVEEAVIAARENAARNGVRNCRFIAGDV 370
Query: 659 EDVM 662
V+
Sbjct: 371 LKVL 374
>gi|422700753|ref|ZP_16758596.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1342]
gi|315170705|gb|EFU14722.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1342]
Length = 468
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 99/417 (23%), Positives = 165/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGND-EGLAGDGSGLKVKS---ARDVVTPLAHMSYSVQL 316
E+A+PGE E G G G L + VK + ++PL H++Y QL
Sbjct: 48 ENALPGEKLEIKVLKTGKSFGYGKVLTVLKSSEQRVPVKDENFTKVGISPLQHLAYGAQL 107
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K + +++++ + LP G+P + P YRNK
Sbjct: 108 SFKTQQVENVMQRVAK-----------LP----------GVPVLPTIGMNDPW--HYRNK 144
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + + + P + K I +++ +
Sbjct: 145 AQIPVR-KIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKY----SVKP 199
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
+N N+G R + VR G G+ + V+LI + +V
Sbjct: 200 YNESDNTGNLRHIVVRRGYHTGEMM----------------VVLITRTPKLFPISKIVPD 243
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLLSIPKADGEPEESN 555
E ++P ++Q+ + +NV D + L
Sbjct: 244 ILE---------------AIPEVVSIVQNVNPKRTNVIFGDETILLHG------------ 276
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
+I D+I +L+F IS +F+QVN E +Y ++A L + ++ D CG GTI
Sbjct: 277 ---SEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTI 333
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GLTLA V GIE+ AV DA NA++N I+N F AE+++ L+++ L P
Sbjct: 334 GLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEELLPKLVENGLQP 390
>gi|28895748|ref|NP_802098.1| RNA methyltransferase [Streptococcus pyogenes SSI-1]
gi|50914416|ref|YP_060388.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes
MGAS10394]
gi|73920489|sp|Q5XBK8.1|Y1070_STRP6 RecName: Full=Uncharacterized RNA methyltransferase M6_Spy1070
gi|342179378|sp|P0DG14.1|Y1024_STRP3 RecName: Full=Uncharacterized RNA methyltransferase SpyM3_1024
gi|342179379|sp|P0DG15.1|Y1024_STRPQ RecName: Full=Uncharacterized RNA methyltransferase SPs0836
gi|28810997|dbj|BAC63931.1| putative RNA methyltransferase [Streptococcus pyogenes SSI-1]
gi|50903490|gb|AAT87205.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes
MGAS10394]
Length = 462
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 98/417 (23%), Positives = 163/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLA----GDGSGLKVKSARDVVTPLAHMSYSVQL 316
++A+P E+ + G G E + + + R + L H++Y QL
Sbjct: 44 DNALPEEVIDMRVLKVNKNSGFGKVEAYHYLSPARNADVNLTYLRTGIADLGHLTYEDQL 103
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
KK + L K+ G+S +E +G YRNK
Sbjct: 104 TFKKKQVQDSLYKIA---------GIS--------------DVTVESTIGMTEPLAYRNK 140
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF + + + + + + + + ++ L++ D+
Sbjct: 141 AQVPVR-RVNGQLETGFFRKHSHDLIPISDYYIQDKEIDRLI----NFTRDLLRRFDIKP 195
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS-ATFDDAVVN 495
++ + +G R + VR G G E+ML+ + F V+
Sbjct: 196 YDETEQTGLLRNIVVRRGHYSG------------------EMMLVLVTTRPKVFR---VD 234
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
E++ +AF P +IQ N+ + +I D +
Sbjct: 235 QVIEKIVEAF-----------PAVVSIIQ------NINDKNTN----AIFGKDFKTLYGK 273
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
D I DS+ + IS +F+QVNT+ AEKLY ++DL D ++ D G GTI
Sbjct: 274 DT----ITDSMLGNNYAISAQSFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTI 329
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL+ A V V G+E+ +AV DA NA +NGI N FV AE M + KD + P
Sbjct: 330 GLSFAKTVKAVYGVEVIEAAVRDAQHNAALNGITNAYFVADTAEHAMATWAKDGIKP 386
>gi|337281824|ref|YP_004621295.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis
ATCC 15912]
gi|335369417|gb|AEH55367.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis
ATCC 15912]
Length = 452
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 106/417 (25%), Positives = 165/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDG----SGLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGE+ + G G E L + R + L H++Y QL
Sbjct: 33 ENALPGEVIRMRVLKVNKKIGYGKVEEYLEKSPHRNEELDLAYLRSGIADLGHLAYPEQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K L K+ G++ E +P L + P+ YRNK
Sbjct: 93 KFKAKQAKDSLYKMA---------GITDME----------VPLTLG--MDHPV--QYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + + + + P + ++ + + F DL
Sbjct: 130 AQVPVR-RVNGQVVTGFFRKNSHDLMPIEDFYIQDPVIDQVVLALRDLIRRF----DLKP 184
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS-ATFDDAVVN 495
++ + SG R L VR G G E+M+I + F V+
Sbjct: 185 YDEKEQSGLIRNLVVRRGHHSG------------------EIMVILVTTRPKVFR---VD 223
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
E+L K F P V+Q+ + A R L G+
Sbjct: 224 QLIEQLIKQF-----------PAIKSVMQNINDQNTNAIFGKEWRTLY-----GQD---- 263
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
I D + F IS AF+QVNT AEKLY D+A+L + ++ D G GTI
Sbjct: 264 -----YITDQMLGNAFQISGPAFYQVNTEMAEKLYQTAIDFAELKEEDVVIDAYSGIGTI 318
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL++A V V G+E+ AV ++ +NA +NGI N +VC AE+ M + LK+ + P
Sbjct: 319 GLSVAKHVKEVYGVEVIPEAVENSQKNASLNGITNAHYVCDTAENAMKNWLKEGIQP 375
>gi|383494097|ref|YP_005411773.1| RNA methyltransferase protein TrmA [Streptococcus pyogenes
MGAS1882]
gi|378929824|gb|AFC68241.1| RNA methyltransferase protein TrmA [Streptococcus pyogenes
MGAS1882]
Length = 451
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 92/373 (24%), Positives = 150/373 (40%), Gaps = 75/373 (20%)
Query: 301 RDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCK 360
R + L H++Y QL KK + L K+ G+S
Sbjct: 77 RTGIADLGHLTYEDQLTFKKKQVQDSLYKIA---------GIS--------------DVT 113
Query: 361 LEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
+E +G YRNK + V + + GF + + + + + + +
Sbjct: 114 VESTIGMTEPLAYRNKAQVPVR-RVNGQLETGFFRKHSHDLIPISDYYIQDKEIDRLI-- 170
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
+ ++ L++ D+ ++ + +G R + VR G G E+ML
Sbjct: 171 --NFTRDLLRRFDIKPYDETEQTGLLRNIVVRRGHYSG------------------EMML 210
Query: 481 IAQVSS-ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL 539
+ + F V+ E++ +AF P +IQ N+ +
Sbjct: 211 VLVTTRPKVFR---VDQVIEKIVEAF-----------PAVVSIIQ------NINDKNTN- 249
Query: 540 RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
+I D + D I DS+ + IS +F+QVNT+ AEKLY ++DL
Sbjct: 250 ---AIFGKDFKTLYGKDT----ITDSMLGNNYAISAQSFYQVNTVMAEKLYQTAIAFSDL 302
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659
D ++ D G GTIGL+ A V V G+E+ +AV DA +NA +NGI N FV AE
Sbjct: 303 SKDDIVIDAYSGIGTIGLSFAKTVKAVYGVEVIEAAVRDAQQNAALNGITNAYFVVDTAE 362
Query: 660 DVMGSLLKDYLNP 672
M + KD + P
Sbjct: 363 HAMATWAKDGIKP 375
>gi|288554996|ref|YP_003426931.1| RNA methyltransferase [Bacillus pseudofirmus OF4]
gi|288546156|gb|ADC50039.1| RNA methyltransferase, TrmA family [Bacillus pseudofirmus OF4]
Length = 459
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 62/101 (61%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I+DSI ++RF IS +F+QVN + LY ++ADL D + D CG GTI L LA
Sbjct: 271 IYDSIGDIRFAISARSFYQVNPDQTKVLYDKALEYADLKGDETVIDAYCGIGTISLFLAQ 330
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
+ V G+E+ A+SDA +NAEING N F +AE+VM
Sbjct: 331 KAKHVYGVEIVPEAISDAKKNAEINGFTNVDFAVGEAENVM 371
>gi|384457248|ref|YP_005669668.1| SAM-dependent methyltransferase [Clostridium acetobutylicum EA
2018]
gi|325507937|gb|ADZ19573.1| SAM-dependent methyltransferase [Clostridium acetobutylicum EA
2018]
Length = 460
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 87/370 (23%), Positives = 149/370 (40%), Gaps = 79/370 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTR----NARKACPNGVSLPEWIMKSREIGGLPCKLE 362
L H+ Y+ QLE KKN + + LK++ + + R G+ P +
Sbjct: 88 LQHLKYTEQLEFKKNKVVECLKRIGKLDLSSVRINETIGMEDPYF--------------- 132
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYA 422
YRNK + VG + + +GF +RE + E C + A +
Sbjct: 133 ----------YRNKVQLPVGET-AGEAKIGF----YRERSHEIIEVDKCFIQDDSANEII 177
Query: 423 SIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIA 482
+ + ++++ ++ +N + G R + +R+ G ++ML+
Sbjct: 178 LLIKRWIKEFNIEGYNEYSGKGTLRHIMIRKAFKTG------------------QIMLVL 219
Query: 483 QVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLL 542
V N+E K T + I + + +NV + L
Sbjct: 220 ----------VTNTENVPHKKELIHMITTEIQGIKGIIQNINNKK--TNVILGQREITLW 267
Query: 543 SIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPD 602
E+ I D I +F IS +FFQ+N + EKLYS +A L
Sbjct: 268 G---------------ESTIEDYIGEFKFNISSKSFFQMNPIQTEKLYSAALKYAGLTGK 312
Query: 603 TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
++FD CGTGTI L L+ V G+E+ A+ +A NA+ NGI+N F+ K+E+ +
Sbjct: 313 EVVFDAYCGTGTISLFLSQNAKKVYGVEIIPEAIENAKINAKQNGIENTEFIVGKSEEEI 372
Query: 663 GSLLKDYLNP 672
L++ + P
Sbjct: 373 PKLIEKGIAP 382
>gi|431751367|ref|ZP_19540057.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2620]
gi|430615483|gb|ELB52432.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2620]
Length = 460
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 94/367 (25%), Positives = 146/367 (39%), Gaps = 71/367 (19%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H++Y QL+ KK+ + Q L+K P G R LP +G
Sbjct: 87 LQHLAYQAQLDFKKDLLLQALEKFK-------PAGF---------RSYQLLPT-----IG 125
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPT-VGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF 425
YRNK +F + + Q + T G N + V + V P ++ +
Sbjct: 126 MDDPWHYRNKAQFQLRKNKQTQKTEAGLYEANSHQLVPITDCLVQEPRTQKVMNTVVQLL 185
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
+F D P+++ NSG +R + VR G G+ +V+ I +
Sbjct: 186 NKF----DAPIYDERTNSGIFRTIMVRIGVKTGE----------------LQVVFITRSK 225
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
+A++ ERL + + + T+LV+ D +V +A
Sbjct: 226 KFPQKNAMIREINERLPEVVSIMQNVQAQK---TSLVMGDE--TIHVWGKEA-------- 272
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
I + I+ + F +SP AFFQ+N E LY G PD +
Sbjct: 273 ----------------IEEQINEVTFDLSPRAFFQLNPQQTELLYGEGIKALGAQPDETI 316
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
D CG GTIGL++A +V V G++ A++DA RNAE G N R+ AE V+
Sbjct: 317 VDAYCGVGTIGLSVAKKVKEVRGMDTVPQAIADAKRNAERLGYHNTRYEVGTAEQVLPKW 376
Query: 666 LKDYLNP 672
L + P
Sbjct: 377 LNEGFQP 383
>gi|19746322|ref|NP_607458.1| RNA methyltransferase [Streptococcus pyogenes MGAS8232]
gi|50401606|sp|Q8P0H4.1|Y1360_STRP8 RecName: Full=Uncharacterized RNA methyltransferase spyM18_1360
gi|19748514|gb|AAL97957.1| putative RNA methyltransferase [Streptococcus pyogenes MGAS8232]
Length = 462
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 97/416 (23%), Positives = 164/416 (39%), Gaps = 77/416 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLA----GDGSGLKVKSARDVVTPLAHMSYSVQL 316
++A+P E+ + G G E + + + R + L H++Y QL
Sbjct: 44 DNALPEEVIDMRVLKVNKNSGFGKVEAYHYLSPARNADVNLTYLRTGIADLGHLTYEDQL 103
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
KK + L K+ G+S +E +G YRNK
Sbjct: 104 TFKKKQVQDSLYKIA---------GIS--------------DVTVESTIGMTEPLAYRNK 140
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF + + + + + + + + ++ L++ D+
Sbjct: 141 AQVPVR-RVNGQLETGFFRKHSHDLIPISDYYIQDKEIDRLI----NFTRDLLRRFDIKP 195
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
++ + +G R + VR G G+ + V+L+ D V+
Sbjct: 196 YDETEQTGLLRNIVVRRGHYSGEMM----------------VVLVTTRPKVFRVDQVI-- 237
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESND 556
E++ +AF P +IQ N+ + +I D + D
Sbjct: 238 --EKIVEAF-----------PAVVSIIQ------NINDENTN----AIFGKDFKTLYGKD 274
Query: 557 VVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIG 616
I DS+ + IS +F+QVNT+ AEKLY ++DL D ++ D G GTIG
Sbjct: 275 T----ITDSMLGNNYAISAQSFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIG 330
Query: 617 LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
L+ A V V G+E+ +AV DA +NA +NGI N FV AE M + KD + P
Sbjct: 331 LSFAKTVKAVYGVEVIEAAVRDAQQNAALNGITNAYFVADTAEHAMATWAKDGIKP 386
>gi|359415221|ref|ZP_09207686.1| RNA methyltransferase, TrmA family [Clostridium sp. DL-VIII]
gi|357174105|gb|EHJ02280.1| RNA methyltransferase, TrmA family [Clostridium sp. DL-VIII]
Length = 456
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 70/114 (61%)
Query: 559 EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLT 618
E I D I +F ISP +FFQVN + E LY+ ++A+L D ++FD CGTGTI L
Sbjct: 265 EDSISDYIGKYKFNISPLSFFQVNPVQTEILYNKALEYANLSGDEVVFDAYCGTGTITLF 324
Query: 619 LAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
LA + V G+E+ A+ +A NA++NGI N F+ K+E+V+ L+ ++P
Sbjct: 325 LAEKAKKVYGVEIVEQAIDNATINAKVNGIDNSEFLVGKSEEVIPELIDQGISP 378
>gi|332652524|ref|ZP_08418269.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcaceae
bacterium D16]
gi|332517670|gb|EGJ47273.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcaceae
bacterium D16]
Length = 452
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 86/321 (26%), Positives = 133/321 (41%), Gaps = 51/321 (15%)
Query: 352 REIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDC 411
R +GGL +L +LG+ YRNK + V Q G +G FR V + DC
Sbjct: 106 RRLGGLDLELPPVLGAEDPLRYRNKVQLPVAQGKQ-----GLSIGYFRPRSHDVLDVKDC 160
Query: 412 PNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNIS 471
P + F+ +++Q +P ++ G R L VR ++ G+ L
Sbjct: 161 PLQPLAVTRLREAFKAWMEQWSVPAYDESTCQGLIRHLYVRTNQA-GQSLCCV------- 212
Query: 472 EVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSN 531
++ + QVS E L KA P L LV+ +Q +N
Sbjct: 213 ---VANGKKLPQVSELV----------EALRKA--------EPGL--IGLVLNINQADTN 249
Query: 532 VAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYS 591
V PE + + +++ + F +S +FFQ+N ++LY+
Sbjct: 250 VILG---------------PEYRTLWGQDFLEETLCGMTFRLSVPSFFQINWAQTQRLYA 294
Query: 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNC 651
D+A L + D+ CG GTI L LA + G VIG E+ A+ DA NA N ++N
Sbjct: 295 QAVDFAALTGQETVLDLYCGIGTISLALAQKAGRVIGAEIVPQAIEDAKANAARNKVENT 354
Query: 652 RFVCAKAEDVMGSLLKDYLNP 672
RF C A V L ++ + P
Sbjct: 355 RFFCGDAGAVAAQLAREGVRP 375
>gi|262113703|emb|CAR95370.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus phage
phi-m46.1]
Length = 462
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 91/373 (24%), Positives = 150/373 (40%), Gaps = 75/373 (20%)
Query: 301 RDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCK 360
R + L H++Y QL KK + L K+ G+S
Sbjct: 88 RTGIADLGHLTYEDQLTFKKKQVQDSLYKIA---------GIS--------------DVT 124
Query: 361 LEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
+E +G YRNK + V + + GF + + + + + + +
Sbjct: 125 VESTIGMTEPLAYRNKAQVPVR-RVNGQLETGFFRKHSHDLIPISDYYIQDKEIDRLI-- 181
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
+ ++ L++ D+ ++ + +G R + VR G G E+ML
Sbjct: 182 --NFTRDLLRRFDIKPYDETEQTGLLRNIVVRRGHYSG------------------EMML 221
Query: 481 IAQVSS-ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL 539
+ + F V+ E++ +AF P +IQ N+ +
Sbjct: 222 VLVTTRPKVFR---VDQVIEKIVEAF-----------PAVVSIIQ------NINDKNTN- 260
Query: 540 RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
+I D + D I DS+ + IS +F+QVNT+ AEKLY ++DL
Sbjct: 261 ---AIFGKDFKTLYGKDT----ITDSMLGNNYAISAQSFYQVNTIMAEKLYQTAIAFSDL 313
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659
D ++ D G GTIGL+ A V V G+E+ +AV DA +NA +NGI N F+ AE
Sbjct: 314 SKDDIVIDAYSGIGTIGLSFAKTVKAVYGVEVIEAAVRDAQQNAALNGITNAYFIADTAE 373
Query: 660 DVMGSLLKDYLNP 672
M + KD + P
Sbjct: 374 HAMATWAKDGIKP 386
>gi|29377186|ref|NP_816340.1| RNA methyltransferase [Enterococcus faecalis V583]
gi|227554196|ref|ZP_03984243.1| tRNA (uracil-5-)-methyltransferase, partial [Enterococcus faecalis
HH22]
gi|257090896|ref|ZP_05585257.1| tRNA (uracil-5-)-methyltransferase trmA [Enterococcus faecalis
CH188]
gi|257420102|ref|ZP_05597096.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis T11]
gi|312902534|ref|ZP_07761740.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0635]
gi|422714799|ref|ZP_16771525.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0309A]
gi|422717937|ref|ZP_16774610.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0309B]
gi|50401756|sp|Q830R6.1|Y2706_ENTFA RecName: Full=Uncharacterized RNA methyltransferase EF_2706
gi|29344652|gb|AAO82410.1| RNA methyltransferase, TrmA family [Enterococcus faecalis V583]
gi|227176695|gb|EEI57667.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis HH22]
gi|256999708|gb|EEU86228.1| tRNA (uracil-5-)-methyltransferase trmA [Enterococcus faecalis
CH188]
gi|257161930|gb|EEU91890.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis T11]
gi|310634204|gb|EFQ17487.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0635]
gi|315573827|gb|EFU86018.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0309B]
gi|315580263|gb|EFU92454.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0309A]
Length = 456
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 100/389 (25%), Positives = 159/389 (40%), Gaps = 87/389 (22%)
Query: 298 KSARDVVTP------------LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLP 345
K+A+D V P L H++Y QL+ KK+ + Q L K + A L
Sbjct: 66 KAAKDRVVPPCPVYETCGGCQLQHLAYKAQLDFKKDLLKQALNKF----KPANYQNYEL- 120
Query: 346 EWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAV 405
+ IG + +P YRNK +F + + + G + + V
Sbjct: 121 -----RKTIG---------MDNPW--NYRNKAQFQLR-QIDGQVEAGLYQADSHQLV--- 160
Query: 406 EEPVD-CPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVE 464
P+D C K + + L LP+++ KNSG +R L VR G G
Sbjct: 161 --PIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTLMVRVGIQTG------ 212
Query: 465 NLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQ 524
EV ++ S F + E++ +A + LP ++Q
Sbjct: 213 ------------EVQVVFITQSQKF------PQKEKMVRAI-------NEQLPEVVSIMQ 247
Query: 525 DHQGV-SNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNT 583
+ Q +++ D L L +ES I + I+++ F +SP AFFQ+N
Sbjct: 248 NVQNKKTSLVMGDDTLHLWG--------KES-------IEEHINDVVFDLSPRAFFQLNP 292
Query: 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNA 643
E LY+ G DL P+ + D CG GTIGL+LA + V G++ +A+ DA NA
Sbjct: 293 EQTEVLYNEGIKALDLQPNETVVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNA 352
Query: 644 EINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
+ G+ N + AED++ K+ P
Sbjct: 353 KRLGVTNTHYAVGTAEDLLPKWFKEGFKP 381
>gi|296451840|ref|ZP_06893559.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile
NAP08]
gi|296879764|ref|ZP_06903738.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile
NAP07]
gi|296259319|gb|EFH06195.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile
NAP08]
gi|296429235|gb|EFH15108.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile
NAP07]
Length = 452
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 87/359 (24%), Positives = 147/359 (40%), Gaps = 73/359 (20%)
Query: 310 MSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPL 369
+ Y+ QLE K N + Q+L ++ + E + IG + +P
Sbjct: 87 LDYNKQLEMKTNEVKQVLSRIGK------------LEDVEVHDTIG---------MDNPY 125
Query: 370 VNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFL 429
YRNK +F + + P +GF +++ V C EI K I + ++
Sbjct: 126 --RYRNKAQFPIQKN-NGVPIIGF----YKKKTHDVISTEKCVIQHEINDKIVKIIKTYI 178
Query: 430 QQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATF 489
+ + +++ ++G R L + G + EVM++
Sbjct: 179 RAYKVSIYDEKTHTGLIRHLVTKIGFTT------------------KEVMVVL------- 213
Query: 490 DDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADG 549
V N K A+ + P LV+ +Q +N + + DG
Sbjct: 214 ---VANGNKLPYLKELASVLKENIPGFK--TLVVNVNQKDTNAILGKENIVIY----GDG 264
Query: 550 EPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVC 609
+I+D I +L F ISP +FFQVN + + LY ++ADL +FD+
Sbjct: 265 -----------KINDYIGDLVFEISPLSFFQVNPVQTKVLYDKALEYADLNETDTVFDIY 313
Query: 610 CGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
CG GTI L LA + V GIE+ A+ DA NA++N + N F KAE+++ + ++
Sbjct: 314 CGIGTISLFLAQKAKKVYGIEIIDDAIKDAKINAKLNNMHNAEFYVGKAEEIVPKMYRE 372
>gi|389856841|ref|YP_006359084.1| tRNA (uracil-5-)-methyltransferase-like SAM-dependent
methyltransferase [Streptococcus suis ST1]
gi|353740559|gb|AER21566.1| tRNA (uracil-5-)-methyltransferase-like SAM-dependent
methyltransferase [Streptococcus suis ST1]
Length = 452
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 92/378 (24%), Positives = 146/378 (38%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L R + L H++Y QL KK + L+K+ + A + + +
Sbjct: 71 LDFTYLRTGIADLGHLTYPAQLAFKKKQVENSLRKIAGISEIAVADTLGMD--------- 121
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
SPL YRNK V + + GF N + V + + +
Sbjct: 122 ------------SPL--AYRNKAAVPVR-RVNGQLETGFFRKNSHDLVPIEDFYIQYKEI 166
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+ ++ L++ DL ++ + +G R + VR G G+ +
Sbjct: 167 DALVLAT----RDLLRKLDLKPYDEKEQTGLVRNIVVRRGHYSGQLM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++ F V + ERL F P ++Q+ + A
Sbjct: 210 ----LVLVTTRPKIFR---VETLIERLTSQF-----------PNLVSIVQNINDQNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
RLL + I D++ F IS +F+QVNT AEKLY
Sbjct: 252 FGQEFRLLHGSET--------------IADTMLGNEFEISAPSFYQVNTEMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D+A+L D ++ D G GTIGL+ A +V V G+E+ AV D+ +NA NGI N +V
Sbjct: 298 DFAELSADDVVIDAYSGIGTIGLSFAKQVKHVYGVEVVEKAVLDSQKNAARNGIDNVTYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
C AE M + D + P
Sbjct: 358 CDSAESAMQKWVADGVKP 375
>gi|293385052|ref|ZP_06630886.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
R712]
gi|293389323|ref|ZP_06633784.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
S613]
gi|312906041|ref|ZP_07765054.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
DAPTO 512]
gi|312909387|ref|ZP_07768243.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
DAPTO 516]
gi|291077730|gb|EFE15094.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
R712]
gi|291081345|gb|EFE18308.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
S613]
gi|310628036|gb|EFQ11319.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
DAPTO 512]
gi|311290411|gb|EFQ68967.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
DAPTO 516]
Length = 504
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 120/501 (23%), Positives = 199/501 (39%), Gaps = 103/501 (20%)
Query: 178 HSDNLKKFLADHGILYKSAKKKKGMTVGF-VKFESVEQLKNAVEELEGISIGNKTLKVAN 236
H ++L FL + + KKK+ + + VK KN V E+E I + ++ L VA
Sbjct: 23 HENSLLLFLGIFIRMSEVYKKKERLMKNYPVK-------KNDVIEVEIIDLTHEGLGVAK 75
Query: 237 VVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGND-EGLAGDGSGL 295
V P+ + E+A+PGE E G G G L +
Sbjct: 76 VD--------HYPLFI--------ENALPGEKLEIKVLKTGKSFGYGKVLTVLKSSEQRV 119
Query: 296 KVKS---ARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSR 352
VK + ++PL H++Y QL K + +++++ + LPE
Sbjct: 120 PVKDENFTKVGISPLQHLAYGAQLSFKTQQVENVMQRVAK-----------LPE------ 162
Query: 353 EIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCP 412
+ LP +G YRNK + V + + GF N + + + P
Sbjct: 163 -VPVLPT-----IGMNDPWHYRNKAQIPVR-KIDNQLQTGFFRKNSHDLIPMEHFYIQDP 215
Query: 413 NVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISE 472
+ K I +++ + +N N+G R + VR G G+ +
Sbjct: 216 EIDAAIVKIRDIMRKY----SVKPYNESDNTGNLRHIVVRRGYHTGEMM----------- 260
Query: 473 VNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSN 531
V+LI + +V E ++P ++Q+ + +N
Sbjct: 261 -----VVLITRTPKLFPISKIVPDILE---------------AIPEVVSIVQNVNPKRTN 300
Query: 532 VAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYS 591
V D + L +I D+I +L+F IS +F+QVN E +Y
Sbjct: 301 VIFGDETILLHG---------------SEKITDTIFDLKFEISARSFYQVNPQQTEVMYQ 345
Query: 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNC 651
++A L + ++ D CG GTIGLTLA V GIE+ AV DA NA++N I+N
Sbjct: 346 KVKEYAALTGNEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENA 405
Query: 652 RFVCAKAEDVMGSLLKDYLNP 672
F AE+++ L+++ L P
Sbjct: 406 TFTAGLAEELLPKLVENGLQP 426
>gi|148264841|ref|YP_001231547.1| RNA methyltransferase [Geobacter uraniireducens Rf4]
gi|146398341|gb|ABQ26974.1| 23S rRNA m(5)U-1939 methyltransferase [Geobacter uraniireducens
Rf4]
Length = 470
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 97/374 (25%), Positives = 152/374 (40%), Gaps = 83/374 (22%)
Query: 306 PLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGIL 365
PL M+Y QL KK + + +++ + KA L ++
Sbjct: 99 PLIQMNYPAQLTWKKQLVGKFVRRY-KTLEKAV----------------------LHDVI 135
Query: 366 GSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF 425
SP YRN + + A+P +G +R V + DCP + K +
Sbjct: 136 ESPQQLNYRNSAKLVITGKF-AEPIIGI----YRRNSHDVLDIGDCPLHHPLINKIITAV 190
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
+ +++ +P++N G R L +R +SE + M++ S
Sbjct: 191 KAGIKKGKVPIYNPKSEMGLLRYLVIR-----------------VSE-TANRAMVVFVTS 232
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVS-NVAPADAPLRLLSI 544
+++ E LAK A ++P ++ Q+ G S NV
Sbjct: 233 ERSYN------EIHHLAKHLQA-------AVPEVTVIDQNINGSSGNVIFGQ-------- 271
Query: 545 PKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTL 604
++ E + +I RF ISP +FFQVN+ AA +Y +W L
Sbjct: 272 -------KDHFVTKEHVLPAAIGGTRFHISPRSFFQVNSGAARIIYEKVREWGALTGKER 324
Query: 605 LFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664
+ D+ CG G I L LA + V+GIE+ +AV+DA NA++N I+NCRF KA DV
Sbjct: 325 VLDLYCGIGGISLFLAGKAREVLGIEVVEAAVADAEMNAQLNNIRNCRF---KAGDV--- 378
Query: 665 LLKDYLNPLREEDE 678
L LREE E
Sbjct: 379 --ARLLGELREEGE 390
>gi|402839168|ref|ZP_10887661.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacteriaceae
bacterium OBRC8]
gi|402270707|gb|EJU19965.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacteriaceae
bacterium OBRC8]
Length = 451
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/305 (26%), Positives = 127/305 (41%), Gaps = 52/305 (17%)
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQ-AKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYA 422
++GSP+ Y+NK EF+ G + +G N + VE DC + E K
Sbjct: 116 VVGSPIQKEYKNKMEFTFGNEEKDGDLLIGLHRKNSSMSIVDVE---DCKIIDEDYRKIL 172
Query: 423 SIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIA 482
E+L++ LP ++ + G+ R L +R+G ++ E L +NI
Sbjct: 173 KTTGEYLRKQGLPHYHIMSHEGYLRHLVIRKG------INTEELLINI-----------V 215
Query: 483 QVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLL 542
S FD + LA G L L
Sbjct: 216 TTSQVDFD---LTDYINILANIELNGNIV-------------------------GILHTL 247
Query: 543 SIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
+ +D + +++ R +D + + +F ISP +FFQ NT AE LY + D G
Sbjct: 248 NDSFSDTVTPKKIEILYGRDYFYDILLDKKFKISPFSFFQTNTKGAEVLYKTAMNMID-G 306
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
L+FD+ GTGTIG++++ R VIGIE+ AV A +NA N I N F+ ++
Sbjct: 307 EKNLIFDLYSGTGTIGISMSQRAKKVIGIEIIEEAVEMAKKNAIANNISNVEFIAGDVKE 366
Query: 661 VMGSL 665
+ L
Sbjct: 367 EVSKL 371
>gi|229546565|ref|ZP_04435290.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
faecalis TX1322]
gi|307274683|ref|ZP_07555855.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX2134]
gi|307284510|ref|ZP_07564672.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0860]
gi|307296382|ref|ZP_07576206.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0411]
gi|422686206|ref|ZP_16744412.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX4000]
gi|229308310|gb|EEN74297.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
faecalis TX1322]
gi|306496037|gb|EFM65622.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0411]
gi|306503187|gb|EFM72441.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0860]
gi|306508612|gb|EFM77710.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX2134]
gi|315029097|gb|EFT41029.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX4000]
Length = 504
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 120/501 (23%), Positives = 199/501 (39%), Gaps = 103/501 (20%)
Query: 178 HSDNLKKFLADHGILYKSAKKKKGMTVGF-VKFESVEQLKNAVEELEGISIGNKTLKVAN 236
H ++L FL + + KKK+ + + VK KN V E+E I + ++ L VA
Sbjct: 23 HENSLLLFLGIFIRMSEVYKKKERLMKNYPVK-------KNDVIEVEIIDLTHEGLGVAK 75
Query: 237 VVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGND-EGLAGDGSGL 295
V P+ + E+A+PGE E G G G L +
Sbjct: 76 VD--------HYPLFI--------ENALPGEKLEIKVLKTGKSFGYGKVLTVLKSSEQRV 119
Query: 296 KVKS---ARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSR 352
VK + ++PL H++Y QL K + +++++ + LPE
Sbjct: 120 PVKDENFTKVGISPLQHLAYGAQLSFKTQQVENVMQRVAK-----------LPE------ 162
Query: 353 EIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCP 412
+ LP +G YRNK + V + + GF N + + + P
Sbjct: 163 -VPVLPT-----IGMNDPWHYRNKAQIPVR-KIDNQLQTGFFRKNSHDLIPMEHFYIQDP 215
Query: 413 NVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISE 472
+ K I +++ + +N N+G R + VR G G+ +
Sbjct: 216 EIDAAIVKIRDIMRKY----SVKPYNESDNTGNLRHIVVRRGYHTGEMM----------- 260
Query: 473 VNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSN 531
V+LI + +V E ++P ++Q+ + +N
Sbjct: 261 -----VVLITRTPKLFPISKIVPDILE---------------AIPEVVSIVQNVNPKRTN 300
Query: 532 VAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYS 591
V D + L +I D+I +L+F IS +F+QVN E +Y
Sbjct: 301 VIFGDETILLHG---------------SEKITDTIFDLKFEISARSFYQVNPQQTEVMYQ 345
Query: 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNC 651
++A L + ++ D CG GTIGLTLA V GIE+ AV DA NA++N I+N
Sbjct: 346 KVKEYAALTGNEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENA 405
Query: 652 RFVCAKAEDVMGSLLKDYLNP 672
F AE+++ L+++ L P
Sbjct: 406 TFTAGLAEELLPKLVENGLQP 426
>gi|374299953|ref|YP_005051592.1| RNA methyltransferase, TrmA family [Desulfovibrio africanus str.
Walvis Bay]
gi|332552889|gb|EGJ49933.1| RNA methyltransferase, TrmA family [Desulfovibrio africanus str.
Walvis Bay]
Length = 508
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 101/376 (26%), Positives = 160/376 (42%), Gaps = 79/376 (21%)
Query: 310 MSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPL 369
+ YS QL K+ +A+ L+ + R + ++ +G + + + ++ SPL
Sbjct: 89 LVYSAQLRWKRQIVAESLRHIGRQSGESGQSGQDVQDLVNETTP-------------SPL 135
Query: 370 VNGYRNKCEFSV-GYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEF 428
+ G+RNK EF+ G L VG L ++R+ V + C +++ A + +E
Sbjct: 136 LRGFRNKMEFAFAGRELH----VG--LRSWRDS-RMVLDVTACGLMADPAMAVLAAVREM 188
Query: 429 LQQSDLPVWNRFKNSGFWRQLTVREGRS-------------------PGK--PLDVENLE 467
+ V++ G WR L +R+ R PG PLD +
Sbjct: 189 ARAGSAAVFDPATGRGVWRFLVLRDSRPAEANAFRTGEGVALPRPLPPGADAPLDPRS-- 246
Query: 468 VNISEVNISEVMLIAQVSSATFDDAVV----NSEFERLAKAFAAGATASSPSLPLTALVI 523
++ A+++ A A++ SE + A A G P L + V
Sbjct: 247 ------SVLGCRGEAELTGAAGLQAILITGPGSEAAKQAAIMAQGLLERFPGLSVAHGVR 300
Query: 524 QDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNT 583
+D V+ I +A G+P V+E S+ LR+ +SP AFFQ NT
Sbjct: 301 RDKAAVAYAE---------EIVRAWGDP-----VLEM----SLGGLRYRLSPQAFFQTNT 342
Query: 584 LAAEKLYSLGGDWADL-----GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSD 638
AE+L+ L + A L GP+ +FD CG G + L LA G V G E+ AV D
Sbjct: 343 AGAERLFGLVEEMAGLSDWPNGPE--IFDCYCGVGAMALRLARATGHVTGFELVEGAVRD 400
Query: 639 AHRNAEINGIKNCRFV 654
A NA +N + NC FV
Sbjct: 401 ATDNARLNNLTNCSFV 416
>gi|28422263|gb|AAH46976.1| Trmt2a protein [Mus musculus]
Length = 353
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 81/152 (53%), Gaps = 3/152 (1%)
Query: 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKL 361
DVVTPL + Y+ QLE K+ ++L+KL + N LP +++ ++ C L
Sbjct: 149 DVVTPLWTVPYTEQLEQKRLECERVLQKLAKEIGNT--NRALLPWLLLQRQQHNKACCPL 206
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
EG+ SP YRNKCEF VG + K TVG LG ++ G AV P D ++ E +
Sbjct: 207 EGVKPSPQQTEYRNKCEFLVGVGVDGKDNTVGCRLGKYKGGTCAVAAPFDTVHIPEATKQ 266
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVR 452
FQEF++ + ++ +G W+QLTVR
Sbjct: 267 VVKAFQEFIRSTPYSAYDPETYTGHWKQLTVR 298
>gi|379705276|ref|YP_005203735.1| RNA methyltransferase [Streptococcus infantarius subsp. infantarius
CJ18]
gi|374681975|gb|AEZ62264.1| RNA methyltransferase [Streptococcus infantarius subsp. infantarius
CJ18]
Length = 453
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 67/111 (60%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I DS+ + IS +F+QVNT AEKLY D++DL D+++ D G GTIGL+ A
Sbjct: 265 ITDSMLGNDYEISAQSFYQVNTEMAEKLYQTAIDFSDLNSDSIVIDAYSGIGTIGLSFAK 324
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
+V V G+E+ +AV DA +NAE NGI N +V AE+ M KD + P
Sbjct: 325 QVKEVYGVEVIETAVEDAKKNAERNGITNAHYVADSAENAMAKWSKDGIKP 375
>gi|257415298|ref|ZP_05592292.1| RNA methyltransferase [Enterococcus faecalis ARO1/DG]
gi|257157126|gb|EEU87086.1| RNA methyltransferase [Enterococcus faecalis ARO1/DG]
Length = 457
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 100/417 (23%), Positives = 166/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGND-EGLAGDGSGLKVKS---ARDVVTPLAHMSYSVQL 316
E+A+PGE E G G G L + VK + ++PL H++Y QL
Sbjct: 37 ENALPGEKLEIKVLKTGKSFGYGKVLTVLKSSEQRVPVKDENFTKVGISPLQHLAYGAQL 96
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K + +++++ + LPE + LP +G YRNK
Sbjct: 97 SFKTQQVENVMQRVAK-----------LPE-------VPVLPT-----IGMNDPWHYRNK 133
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + + + P + K I +++ +
Sbjct: 134 AQIPVR-KIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKY----SVKP 188
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
+N N+G R + VR G G+ + V+LI + +V
Sbjct: 189 YNESDNTGNLRHIVVRRGYHTGEMM----------------VVLITRTPKLFPISKIVPD 232
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLLSIPKADGEPEESN 555
E ++P ++Q+ + +NV D + L
Sbjct: 233 ILE---------------AIPEVVSIVQNVNPKRTNVIFGDETILLHG------------ 265
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
+I D+I +L+F IS +F+QVN E +Y ++A L + ++ D CG GTI
Sbjct: 266 ---SEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTI 322
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GLTLA V GIE+ AV DA NA++N I+N F AE+++ L+++ L P
Sbjct: 323 GLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEELLPKLVENGLQP 379
>gi|295114059|emb|CBL32696.1| 23S rRNA m(5)U-1939 methyltransferase [Enterococcus sp. 7L76]
Length = 457
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 100/417 (23%), Positives = 166/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGND-EGLAGDGSGLKVKS---ARDVVTPLAHMSYSVQL 316
E+A+PGE E G G G L + VK + ++PL H++Y QL
Sbjct: 37 ENALPGEKLEIKVLKTGKSFGYGKVLTVLKSSEQRVPVKDENFTKVGISPLQHLAYGAQL 96
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K + +++++ + LPE + LP +G YRNK
Sbjct: 97 SFKTQQVENVMQRVAK-----------LPE-------VPVLPT-----IGMNDPWHYRNK 133
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + + + P + K I +++ +
Sbjct: 134 AQIPVR-KIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKY----SVKP 188
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
+N N+G R + VR G G+ + V+LI + +V
Sbjct: 189 YNESDNTGNLRHIVVRRGYHTGEMM----------------VVLITRTPKLFPISKIVPD 232
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLLSIPKADGEPEESN 555
E ++P ++Q+ + +NV D + L
Sbjct: 233 ILE---------------AIPEVVSIVQNVNPKRTNVIFGDETILLHG------------ 265
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
+I D+I +L+F IS +F+QVN E +Y ++A L + ++ D CG GTI
Sbjct: 266 ---SEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTI 322
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GLTLA V GIE+ AV DA NA++N I+N F AE+++ L+++ L P
Sbjct: 323 GLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEELLPKLVENGLQP 379
>gi|229549174|ref|ZP_04437899.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis ATCC
29200]
gi|255971891|ref|ZP_05422477.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T1]
gi|256957937|ref|ZP_05562108.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis DS5]
gi|257079874|ref|ZP_05574235.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis JH1]
gi|257421676|ref|ZP_05598666.1| RNA methyltransferase [Enterococcus faecalis X98]
gi|294780400|ref|ZP_06745766.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
PC1.1]
gi|300860697|ref|ZP_07106784.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TUSoD Ef11]
gi|307269643|ref|ZP_07550978.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX4248]
gi|312953733|ref|ZP_07772567.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0102]
gi|384519500|ref|YP_005706805.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
62]
gi|397700897|ref|YP_006538685.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
D32]
gi|422693486|ref|ZP_16751500.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0031]
gi|422693997|ref|ZP_16752002.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX4244]
gi|422707216|ref|ZP_16764913.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0043]
gi|422710862|ref|ZP_16767797.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0027]
gi|422725719|ref|ZP_16782176.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0312]
gi|422869660|ref|ZP_16916173.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1467]
gi|428767856|ref|YP_007153967.1| RNA methyltransferase, TrmA family [Enterococcus faecalis str.
Symbioflor 1]
gi|229305411|gb|EEN71407.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis ATCC
29200]
gi|255962909|gb|EET95385.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T1]
gi|256948433|gb|EEU65065.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis DS5]
gi|256987904|gb|EEU75206.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis JH1]
gi|257163500|gb|EEU93460.1| RNA methyltransferase [Enterococcus faecalis X98]
gi|294452500|gb|EFG20936.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
PC1.1]
gi|300849736|gb|EFK77486.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TUSoD Ef11]
gi|306514033|gb|EFM82620.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX4248]
gi|310628360|gb|EFQ11643.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0102]
gi|315035082|gb|EFT47014.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0027]
gi|315148672|gb|EFT92688.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX4244]
gi|315151812|gb|EFT95828.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0031]
gi|315155574|gb|EFT99590.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0043]
gi|315159336|gb|EFU03353.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0312]
gi|323481633|gb|ADX81072.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
62]
gi|329570604|gb|EGG52323.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1467]
gi|397337536|gb|AFO45208.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
D32]
gi|427186029|emb|CCO73253.1| RNA methyltransferase, TrmA family [Enterococcus faecalis str.
Symbioflor 1]
Length = 456
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 100/389 (25%), Positives = 159/389 (40%), Gaps = 87/389 (22%)
Query: 298 KSARDVVTP------------LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLP 345
K+A+D V P L H++Y QL+ KK+ + Q L K + A L
Sbjct: 66 KAAKDRVVPPCPVYETCGGCQLQHLAYKAQLDFKKDLLKQALNKF----KPANYQNYEL- 120
Query: 346 EWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAV 405
+ IG + +P YRNK +F + + + G + + V
Sbjct: 121 -----RKTIG---------MENPW--NYRNKAQFQLR-QIDGQVEAGLYQADSHQLV--- 160
Query: 406 EEPVD-CPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVE 464
P+D C K + + L LP+++ KNSG +R L VR G G
Sbjct: 161 --PIDNCLVQQPATTKVMNTLVDLLNNFQLPIYDERKNSGIFRTLMVRVGIQTG------ 212
Query: 465 NLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQ 524
EV ++ S F + E++ +A + LP ++Q
Sbjct: 213 ------------EVQVVFITQSQKF------PQKEKMVRAI-------NEQLPEVVSIMQ 247
Query: 525 DHQGV-SNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNT 583
+ Q +++ D L L +ES I + I+++ F +SP AFFQ+N
Sbjct: 248 NVQNKKTSLVMGDDTLHLWG--------KES-------IEEHINDVVFDLSPRAFFQLNP 292
Query: 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNA 643
E LY+ G DL P+ + D CG GTIGL+LA + V G++ +A+ DA NA
Sbjct: 293 EQTEVLYNEGIKALDLQPNETVVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNA 352
Query: 644 EINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
+ G+ N + AED++ K+ P
Sbjct: 353 KRLGVTNTHYAVGTAEDLLPKWFKEGFKP 381
>gi|422741474|ref|ZP_16795499.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX2141]
gi|315143898|gb|EFT87914.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX2141]
Length = 456
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 100/389 (25%), Positives = 159/389 (40%), Gaps = 87/389 (22%)
Query: 298 KSARDVVTP------------LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLP 345
K+A+D V P L H++Y QL+ KK+ + Q L K + A L
Sbjct: 66 KAAKDRVVPPCPVYETCGGCQLQHLAYKAQLDFKKDLLKQALNKF----KPANYQNYEL- 120
Query: 346 EWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAV 405
+ IG + +P YRNK +F + + + G + + V
Sbjct: 121 -----RKTIG---------MENPW--NYRNKAQFQLR-QIDGQVEAGLYQADSHQLV--- 160
Query: 406 EEPVD-CPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVE 464
P+D C K + + L LP+++ KNSG +R L VR G G
Sbjct: 161 --PIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTLMVRVGIQTG------ 212
Query: 465 NLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQ 524
EV ++ S F + E++ +A + LP ++Q
Sbjct: 213 ------------EVQVVFITQSQKF------PQKEKMVRAI-------NEQLPEVVSIMQ 247
Query: 525 DHQGV-SNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNT 583
+ Q +++ D L L +ES I + I+++ F +SP AFFQ+N
Sbjct: 248 NVQNKKTSLVMGDDTLHLWG--------KES-------IEEHINDVVFDLSPRAFFQLNP 292
Query: 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNA 643
E LY+ G DL P+ + D CG GTIGL+LA + V G++ +A+ DA NA
Sbjct: 293 EQTEVLYNEGIKVLDLQPNETVVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNA 352
Query: 644 EINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
+ G+ N + AED++ K+ P
Sbjct: 353 KRLGVTNTHYAVGTAEDLLPKWFKEGFKP 381
>gi|307276947|ref|ZP_07558057.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX2134]
gi|306506370|gb|EFM75530.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX2134]
Length = 456
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 100/389 (25%), Positives = 159/389 (40%), Gaps = 87/389 (22%)
Query: 298 KSARDVVTP------------LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLP 345
K+A+D V P L H++Y QL+ KK+ + Q L K + A L
Sbjct: 66 KAAKDRVVPPCPVYETCGGCQLQHLAYKAQLDFKKDLLKQALNKF----KPANYQNYEL- 120
Query: 346 EWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAV 405
+ IG + +P YRNK +F + + + G + + V
Sbjct: 121 -----RKTIG---------MENPW--NYRNKAQFQLR-QIDGQVEAGLYQADSHQLV--- 160
Query: 406 EEPVD-CPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVE 464
P+D C K + + L LP+++ KNSG +R L VR G G
Sbjct: 161 --PIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTLMVRVGIQTG------ 212
Query: 465 NLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQ 524
EV ++ S F + E++ +A + LP ++Q
Sbjct: 213 ------------EVQVVFITQSQKF------PQKEKMVRAI-------NEQLPEVVSIMQ 247
Query: 525 DHQGV-SNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNT 583
+ Q +++ D L L +ES I + I+++ F +SP AFFQ+N
Sbjct: 248 NVQNKKTSLVMGDDTLHLWG--------KES-------IEEHINDVVFDLSPRAFFQLNP 292
Query: 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNA 643
E LY+ G DL P+ + D CG GTIGL+LA + V G++ +A+ DA NA
Sbjct: 293 EQTEVLYNEGIKALDLQPNETVVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNA 352
Query: 644 EINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
+ G+ N + AED++ K+ P
Sbjct: 353 KRLGVTNTHYAVGTAEDLLPKWFKEGFKP 381
>gi|229548674|ref|ZP_04437399.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
faecalis ATCC 29200]
gi|312953113|ref|ZP_07771962.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0102]
gi|422691255|ref|ZP_16749292.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0031]
gi|422695590|ref|ZP_16753569.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX4244]
gi|422705735|ref|ZP_16763528.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0043]
gi|229306190|gb|EEN72186.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
faecalis ATCC 29200]
gi|310628947|gb|EFQ12230.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0102]
gi|315146955|gb|EFT90971.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX4244]
gi|315153976|gb|EFT97992.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0031]
gi|315156740|gb|EFU00757.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0043]
Length = 504
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 119/501 (23%), Positives = 198/501 (39%), Gaps = 103/501 (20%)
Query: 178 HSDNLKKFLADHGILYKSAKKKKGMTVGF-VKFESVEQLKNAVEELEGISIGNKTLKVAN 236
H ++L FL + + KKK+ + + VK KN V E+E I + ++ L VA
Sbjct: 23 HENSLLLFLGIFIRMSEVYKKKERLMKNYPVK-------KNDVIEVEIIDLTHEGLGVAK 75
Query: 237 VVPRSFDKNIKSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGND-EGLAGDGSGL 295
V P+ + E+A+PGE E G G G L +
Sbjct: 76 VD--------HYPLFI--------ENALPGEKLEIKVLKTGKSFGYGKVLTVLKSSEQRV 119
Query: 296 KVKS---ARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSR 352
VK + ++PL H++Y QL K + +++++ + LP
Sbjct: 120 PVKDENFTKVGISPLQHLAYGAQLSFKTQQVENVMQRVAK-----------LP------- 161
Query: 353 EIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCP 412
G+P + P YRNK + V + + GF N + + + P
Sbjct: 162 ---GVPVLPTIGMNDPW--HYRNKAQIPVR-KIDNQLQTGFFRKNSHDLIPMEHFYIQDP 215
Query: 413 NVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISE 472
+ K I +++ + +N N+G R + VR G G+ +
Sbjct: 216 EIDAAIVKIRDIMRKY----SVKPYNESDNTGNLRHIVVRRGYHTGEMM----------- 260
Query: 473 VNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSN 531
V+LI + +V E ++P ++Q+ + +N
Sbjct: 261 -----VVLITRTPKLFPISKIVPDILE---------------AIPEVVSIVQNVNPKRTN 300
Query: 532 VAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYS 591
V D + L +I D+I +L+F IS +F+QVN E +Y
Sbjct: 301 VIFGDETILLHG---------------SEKITDTIFDLKFEISARSFYQVNPQQTEVMYQ 345
Query: 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNC 651
++A L + ++ D CG GTIGLTLA V GIE+ AV DA NA++N I+N
Sbjct: 346 KVKEYAALTGNEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENA 405
Query: 652 RFVCAKAEDVMGSLLKDYLNP 672
F AE+++ L+++ L P
Sbjct: 406 TFTAGLAEELLPKLVENGLQP 426
>gi|312900072|ref|ZP_07759389.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0470]
gi|311292829|gb|EFQ71385.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0470]
Length = 456
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 100/389 (25%), Positives = 159/389 (40%), Gaps = 87/389 (22%)
Query: 298 KSARDVVTP------------LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLP 345
K+A+D V P L H++Y QL+ KK+ + Q L K + A L
Sbjct: 66 KAAKDRVVPPCPVYETCGGCQLQHLAYKAQLDFKKDLLKQALNKF----KPANYQNYEL- 120
Query: 346 EWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAV 405
+ IG + +P YRNK +F + + + G + + V
Sbjct: 121 -----RKTIG---------MENPW--NYRNKAQFQLR-QIDGQVEAGLYQADSHQLV--- 160
Query: 406 EEPVD-CPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVE 464
P+D C K + + L LP+++ KNSG +R L VR G G
Sbjct: 161 --PIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTLMVRVGIQTG------ 212
Query: 465 NLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQ 524
EV ++ S F + E++ +A + LP ++Q
Sbjct: 213 ------------EVQVVFITQSQKF------PQKEKMVRAI-------NEQLPEVVSIMQ 247
Query: 525 DHQGV-SNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNT 583
+ Q +++ D L L +ES I + I+++ F +SP AFFQ+N
Sbjct: 248 NVQNKKTSLVMGDDTLHLWG--------KES-------IEEHINDVVFDLSPRAFFQLNP 292
Query: 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNA 643
E LY+ G DL P+ + D CG GTIGL+LA + V G++ +A+ DA NA
Sbjct: 293 EQTEVLYNEGIKALDLQPNETVVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNA 352
Query: 644 EINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
+ G+ N + AED++ K+ P
Sbjct: 353 KRLGVTNTHYAVGTAEDLLPKWFKEGFKP 381
>gi|256959863|ref|ZP_05564034.1| RNA methyltransferase [Enterococcus faecalis Merz96]
gi|256950359|gb|EEU66991.1| RNA methyltransferase [Enterococcus faecalis Merz96]
Length = 457
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 100/417 (23%), Positives = 166/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGND-EGLAGDGSGLKVKS---ARDVVTPLAHMSYSVQL 316
E+A+PGE E G G G L + VK + ++PL H++Y QL
Sbjct: 37 ENALPGEKLEIKVLKTGKSFGYGKVLTVLKSSEQRVPVKDENFTKVGISPLQHLAYGAQL 96
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K + +++++ + LPE + LP +G YRNK
Sbjct: 97 SFKTQQVENVMQRVAK-----------LPE-------VPVLPT-----IGMNDPWHYRNK 133
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + + + P + K I +++ +
Sbjct: 134 AQIPVR-KIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKY----SVKP 188
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
+N N+G R + VR G G+ + V+LI + +V
Sbjct: 189 YNESDNTGNLRHIVVRRGYHTGEMM----------------VVLITRTPKLFPISKIVPD 232
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLLSIPKADGEPEESN 555
E ++P ++Q+ + +NV D + L
Sbjct: 233 ILE---------------AIPEVVSIVQNVNPKRTNVIFGDETILLHG------------ 265
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
+I D+I +L+F IS +F+QVN E +Y ++A L + ++ D CG GTI
Sbjct: 266 ---SEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTI 322
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GLTLA V GIE+ AV DA NA++N I+N F AE+++ L+++ L P
Sbjct: 323 GLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEELLPKLVENGLQP 379
>gi|442805392|ref|YP_007373541.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
stercorarium subsp. stercorarium DSM 8532]
gi|442741242|gb|AGC68931.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
stercorarium subsp. stercorarium DSM 8532]
Length = 454
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 94/367 (25%), Positives = 149/367 (40%), Gaps = 83/367 (22%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L HMSY++QL+ K + L++ IGG GI
Sbjct: 82 LQHMSYNMQLKFKHRVVTDNLER------------------------IGGF----WGIQV 113
Query: 367 SPLVN-----GYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKY 421
SP++ YRNK ++ VG P GF + + + C + K
Sbjct: 114 SPVIGMDNPMNYRNKAQYPVGMG-DNGPVAGF----YARRSHIIIDSERCGIQHPASEKV 168
Query: 422 ASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLI 481
+ E +++ +PV+N G R + R S G +VM+I
Sbjct: 169 KNTVLEAVKELKIPVYNEITGEGILRHIVTRVSYSTG------------------DVMVI 210
Query: 482 AQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRL 541
VV E K T P + ++V+ ++ NV D ++
Sbjct: 211 L----------VVTDEKVPGLKKIIQKITREIPEV--ISIVLNINKRRDNVILGD---KV 255
Query: 542 LSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGP 601
++ +D + D + +L+F ISP +F+QVN + KLY+ ++A L
Sbjct: 256 RTVYGSD------------TLVDRLGHLKFHISPLSFYQVNPVQTVKLYNKAVEFAGLTG 303
Query: 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661
+ +FD+ CG GTI L LA + VIG+E+ AV A +NA +N I N RF C +AE V
Sbjct: 304 NETVFDLYCGIGTISLFLAEKAKEVIGVEVVPEAVEAATKNAVLNNISNARFYCGEAEKV 363
Query: 662 MGSLLKD 668
+ L +
Sbjct: 364 VPELYNE 370
>gi|255974885|ref|ZP_05425471.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T2]
gi|256616789|ref|ZP_05473635.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis ATCC
4200]
gi|256854009|ref|ZP_05559374.1| RNA methyltransferase [Enterococcus faecalis T8]
gi|256961043|ref|ZP_05565214.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis
Merz96]
gi|257081727|ref|ZP_05576088.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis E1Sol]
gi|293384567|ref|ZP_06630433.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
R712]
gi|293386796|ref|ZP_06631367.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
S613]
gi|307278742|ref|ZP_07559809.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0860]
gi|307290285|ref|ZP_07570201.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0411]
gi|312906393|ref|ZP_07765401.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
DAPTO 512]
gi|312979448|ref|ZP_07791136.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
DAPTO 516]
gi|421513862|ref|ZP_15960607.1| RNA methyltransferase, TrmA family [Enterococcus faecalis ATCC
29212]
gi|421514604|ref|ZP_15961292.1| RNA methyltransferase, TrmA family [Enterococcus faecalis ATCC
29212]
gi|422684858|ref|ZP_16743083.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX4000]
gi|422701112|ref|ZP_16758953.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1342]
gi|422720110|ref|ZP_16776733.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0017]
gi|255967757|gb|EET98379.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T2]
gi|256596316|gb|EEU15492.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis ATCC
4200]
gi|256710952|gb|EEU25995.1| RNA methyltransferase [Enterococcus faecalis T8]
gi|256951539|gb|EEU68171.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis
Merz96]
gi|256989757|gb|EEU77059.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis E1Sol]
gi|291078113|gb|EFE15477.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
R712]
gi|291083799|gb|EFE20762.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
S613]
gi|306498706|gb|EFM68207.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0411]
gi|306504603|gb|EFM73806.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0860]
gi|310627547|gb|EFQ10830.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
DAPTO 512]
gi|311287819|gb|EFQ66375.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
DAPTO 516]
gi|315030469|gb|EFT42401.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX4000]
gi|315032560|gb|EFT44492.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0017]
gi|315170491|gb|EFU14508.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1342]
gi|401672392|gb|EJS78862.1| RNA methyltransferase, TrmA family [Enterococcus faecalis ATCC
29212]
gi|401673043|gb|EJS79456.1| RNA methyltransferase, TrmA family [Enterococcus faecalis ATCC
29212]
Length = 456
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 100/389 (25%), Positives = 159/389 (40%), Gaps = 87/389 (22%)
Query: 298 KSARDVVTP------------LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLP 345
K+A+D V P L H++Y QL+ KK+ + Q L K + A L
Sbjct: 66 KAAKDRVVPPCPVYETCGGCQLQHLAYKAQLDFKKDLLKQALNKF----KPANYQNYEL- 120
Query: 346 EWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAV 405
+ IG + +P YRNK +F + + + G + + V
Sbjct: 121 -----RKTIG---------MENPW--NYRNKAQFQLR-QIDGQVEAGLYQADSHQLV--- 160
Query: 406 EEPVD-CPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVE 464
P+D C K + + L LP+++ KNSG +R L VR G G
Sbjct: 161 --PIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTLMVRVGIQTG------ 212
Query: 465 NLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQ 524
EV ++ S F + E++ +A + LP ++Q
Sbjct: 213 ------------EVQVVFITQSQKF------PQKEKMVRAI-------NEQLPEVVSIMQ 247
Query: 525 DHQGV-SNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNT 583
+ Q +++ D L L +ES I + I+++ F +SP AFFQ+N
Sbjct: 248 NVQNKKTSLVMGDDTLHLWG--------KES-------IEEHINDVVFDLSPRAFFQLNP 292
Query: 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNA 643
E LY+ G DL P+ + D CG GTIGL+LA + V G++ +A+ DA NA
Sbjct: 293 EQTEVLYNEGIKALDLQPNETVVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNA 352
Query: 644 EINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
+ G+ N + AED++ K+ P
Sbjct: 353 KRLGVTNTHYAVGTAEDLLPKWFKEGFKP 381
>gi|256957402|ref|ZP_05561573.1| RNA methyltransferase [Enterococcus faecalis DS5]
gi|256964435|ref|ZP_05568606.1| RNA methyltransferase [Enterococcus faecalis HIP11704]
gi|257077602|ref|ZP_05571963.1| RNA methyltransferase [Enterococcus faecalis JH1]
gi|294779933|ref|ZP_06745314.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
PC1.1]
gi|397699125|ref|YP_006536913.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
D32]
gi|256947898|gb|EEU64530.1| RNA methyltransferase [Enterococcus faecalis DS5]
gi|256954931|gb|EEU71563.1| RNA methyltransferase [Enterococcus faecalis HIP11704]
gi|256985632|gb|EEU72934.1| RNA methyltransferase [Enterococcus faecalis JH1]
gi|294452982|gb|EFG21403.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
PC1.1]
gi|397335764|gb|AFO43436.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
D32]
Length = 457
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 100/417 (23%), Positives = 166/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGND-EGLAGDGSGLKVKS---ARDVVTPLAHMSYSVQL 316
E+A+PGE E G G G L + VK + ++PL H++Y QL
Sbjct: 37 ENALPGEKLEIKVLKTGKSFGYGKVLTVLKSSEQRVPVKDENFTKVGISPLQHLAYGAQL 96
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K + +++++ + LPE + LP +G YRNK
Sbjct: 97 SFKTQQVENVMQRVAK-----------LPE-------VPVLPT-----IGMNDPWHYRNK 133
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + + + P + K I +++ +
Sbjct: 134 AQIPVR-KIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKY----SVKP 188
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
+N N+G R + VR G G+ + V+LI + +V
Sbjct: 189 YNESDNTGNLRHIVVRRGYHTGEMM----------------VVLITRTPKLFPISKIVPD 232
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLLSIPKADGEPEESN 555
E ++P ++Q+ + +NV D + L
Sbjct: 233 ILE---------------AIPEVVSIVQNVNPKRTNVIFGDETILLHG------------ 265
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
+I D+I +L+F IS +F+QVN E +Y ++A L + ++ D CG GTI
Sbjct: 266 ---SEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTI 322
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GLTLA V GIE+ AV DA NA++N I+N F AE+++ L+++ L P
Sbjct: 323 GLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEELLPKLVENGLQP 379
>gi|255971187|ref|ZP_05421773.1| RNA methyltransferase [Enterococcus faecalis T1]
gi|255973811|ref|ZP_05424397.1| RNA methyltransferase [Enterococcus faecalis T2]
gi|257083655|ref|ZP_05578016.1| RNA methyltransferase [Enterococcus faecalis Fly1]
gi|384517791|ref|YP_005705096.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
62]
gi|430360270|ref|ZP_19426193.1| RNA methyltransferase [Enterococcus faecalis OG1X]
gi|430368878|ref|ZP_19428425.1| RNA methyltransferase [Enterococcus faecalis M7]
gi|255962205|gb|EET94681.1| RNA methyltransferase [Enterococcus faecalis T1]
gi|255966683|gb|EET97305.1| RNA methyltransferase [Enterococcus faecalis T2]
gi|256991685|gb|EEU78987.1| RNA methyltransferase [Enterococcus faecalis Fly1]
gi|323479924|gb|ADX79363.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
62]
gi|429512962|gb|ELA02556.1| RNA methyltransferase [Enterococcus faecalis OG1X]
gi|429516067|gb|ELA05564.1| RNA methyltransferase [Enterococcus faecalis M7]
Length = 457
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 100/417 (23%), Positives = 166/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGND-EGLAGDGSGLKVKS---ARDVVTPLAHMSYSVQL 316
E+A+PGE E G G G L + VK + ++PL H++Y QL
Sbjct: 37 ENALPGEKLEIKVLKTGKSFGYGKVLTVLKSSEQRVPVKDENFTKVGISPLQHLAYGAQL 96
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K + +++++ + LPE + LP +G YRNK
Sbjct: 97 SFKTQQVENVMQRVAK-----------LPE-------VPVLPT-----IGMNDPWHYRNK 133
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + + + P + K I +++ +
Sbjct: 134 AQIPVR-KIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKY----SVKP 188
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
+N N+G R + VR G G+ + V+LI + +V
Sbjct: 189 YNESDNTGNLRHIVVRRGYHTGEMM----------------VVLITRTPKLFPISKIVPD 232
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLLSIPKADGEPEESN 555
E ++P ++Q+ + +NV D + L
Sbjct: 233 ILE---------------AIPEVVSIVQNVNPKRTNVIFGDETILLHG------------ 265
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
+I D+I +L+F IS +F+QVN E +Y ++A L + ++ D CG GTI
Sbjct: 266 ---SEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTI 322
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GLTLA V GIE+ AV DA NA++N I+N F AE+++ L+++ L P
Sbjct: 323 GLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEELLPKLVENGLQP 379
>gi|374338341|ref|YP_005095053.1| TrmA family RNA methyltransferase [Streptococcus macedonicus ACA-DC
198]
gi|372284453|emb|CCF02726.1| RNA methyltransferase, TrmA family [Streptococcus macedonicus
ACA-DC 198]
Length = 453
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 66/111 (59%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I DS+ ++ IS +F+QVNT AE+LY D++DL P+ ++ D G GTIGL+ A
Sbjct: 265 IVDSMLGNQYEISALSFYQVNTEMAERLYQTAIDFSDLTPEDIVIDAYSGIGTIGLSFAK 324
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
V V G+E+ AV DA RNA +NGI N +V AE M + KD + P
Sbjct: 325 NVKAVYGVEVIEEAVEDAKRNAALNGITNAHYVADSAEHAMATWSKDGIKP 375
>gi|306831715|ref|ZP_07464872.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
gi|325978654|ref|YP_004288370.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
gi|304426140|gb|EFM29255.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
gi|325178582|emb|CBZ48626.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
Length = 453
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 66/111 (59%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I DS+ ++ IS +F+QVNT AE+LY D++DL P+ ++ D G GTIGL+ A
Sbjct: 265 IIDSMLGNQYEISARSFYQVNTEMAERLYQTAIDFSDLTPEDIVIDAYSGIGTIGLSFAK 324
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
V V G+E+ AV DA RNA +NGI N +V AE M + KD + P
Sbjct: 325 NVKAVYGVEVIEEAVEDAKRNAALNGITNAHYVADSAEHAMATWSKDGIKP 375
>gi|257420988|ref|ZP_05597978.1| RNA methyltransferase [Enterococcus faecalis X98]
gi|257162812|gb|EEU92772.1| RNA methyltransferase [Enterococcus faecalis X98]
Length = 457
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 99/417 (23%), Positives = 165/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGND-EGLAGDGSGLKVKS---ARDVVTPLAHMSYSVQL 316
E+A+PGE E G G G L + VK + ++PL H++Y QL
Sbjct: 37 ENALPGEKLEIKVLKTGKSFGYGKVLTVLKSSEQRVPVKDENFTKVGISPLQHLAYGAQL 96
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K + +++++ + LP G+P + P YRNK
Sbjct: 97 SFKTQQVENVMQRVAK-----------LP----------GVPVLPTIGMNDPW--HYRNK 133
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + + + P + K I +++ +
Sbjct: 134 AQIPVR-KIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKY----SVKP 188
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
+N N+G R + VR G G+ + V+LI + +V
Sbjct: 189 YNESDNTGNLRHIVVRRGYHTGEMM----------------VVLITRTPKLFPISKIVPD 232
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLLSIPKADGEPEESN 555
E ++P ++Q+ + +NV D + L
Sbjct: 233 ILE---------------AIPEVVSIVQNVNPKRTNVIFGDETILLHG------------ 265
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
+I D+I +L+F IS +F+QVN E +Y ++A L + ++ D CG GTI
Sbjct: 266 ---SEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTI 322
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GLTLA V GIE+ AV DA NA++N I+N F AE+++ L+++ L P
Sbjct: 323 GLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEELLPKLVENGLQP 379
>gi|363891095|ref|ZP_09318378.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacteriaceae
bacterium CM5]
gi|361962062|gb|EHL15211.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacteriaceae
bacterium CM5]
Length = 451
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 129/307 (42%), Gaps = 56/307 (18%)
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQ-AKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYA 422
++GSP+ Y+NK EF+ G + +G N + VE DC + E K
Sbjct: 116 VVGSPIQQEYKNKMEFTFGNEEKDGDLLIGLHRKNSSMSIVNVE---DCKIIDEDYRKIL 172
Query: 423 SIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIA 482
E+ ++ LP ++ + G+ R L +R+G ++ E L +NI
Sbjct: 173 KTTGEYFRKQGLPHYHIMSHEGYLRHLVIRKG------INTEELLINI------------ 214
Query: 483 QVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALV--IQDHQGVSNVAPADAPLR 540
T S LT + + + + N+ L
Sbjct: 215 --------------------------VTTSQIDFDLTDYINILANIELNGNIV---GILH 245
Query: 541 LLSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWAD 598
L+ +D E +++ R +D + + +F ISP +FFQ NT AE LY + D
Sbjct: 246 TLNDSFSDTVTPEKIEILYGRDYFYDILLDKKFKISPFSFFQTNTKGAEVLYKTAMNMID 305
Query: 599 LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658
G L+FD+ GTGTIG++++ R VIGIE+ AV A +NA N I N F+
Sbjct: 306 -GEKNLIFDLYSGTGTIGISMSQRAKKVIGIEIIEEAVEMAKKNAIANNISNVEFIAGDV 364
Query: 659 EDVMGSL 665
++ + L
Sbjct: 365 KEEVSKL 371
>gi|422731918|ref|ZP_16788266.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0645]
gi|422734461|ref|ZP_16790750.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1341]
gi|315162126|gb|EFU06143.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0645]
gi|315168692|gb|EFU12709.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1341]
Length = 456
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 100/389 (25%), Positives = 159/389 (40%), Gaps = 87/389 (22%)
Query: 298 KSARDVVTP------------LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLP 345
K+A+D V P L H++Y QL+ KK+ + Q L K + A L
Sbjct: 66 KAAKDRVVPPCPVYETCGGCQLQHLAYKAQLDFKKDLLKQALNKF----KPANYQNYEL- 120
Query: 346 EWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAV 405
+ IG + +P YRNK +F + + + G + + V
Sbjct: 121 -----RKTIG---------MENPW--NYRNKAQFQLR-QIDGQVEAGLYQADSHQLV--- 160
Query: 406 EEPVD-CPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVE 464
P+D C K + + L LP+++ KNSG +R L VR G G
Sbjct: 161 --PIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTLMVRVGIQTG------ 212
Query: 465 NLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQ 524
EV ++ S F + E++ +A + LP ++Q
Sbjct: 213 ------------EVQVVFITQSKKF------PQKEKMVRAI-------NEQLPEVVSIMQ 247
Query: 525 DHQGV-SNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNT 583
+ Q +++ D L L +ES I + I+++ F +SP AFFQ+N
Sbjct: 248 NVQNKKTSLVMGDDTLHLWG--------KES-------IEEHINDVVFDLSPRAFFQLNP 292
Query: 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNA 643
E LY+ G DL P+ + D CG GTIGL+LA + V G++ +A+ DA NA
Sbjct: 293 EQTEVLYNEGIKALDLQPNETVVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNA 352
Query: 644 EINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
+ G+ N + AED++ K+ P
Sbjct: 353 KRLGVTNTHYAVGTAEDLLPKWFKEGFKP 381
>gi|255657345|ref|ZP_05402754.1| putative RNA methyltransferase [Clostridium difficile QCD-23m63]
Length = 453
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 87/360 (24%), Positives = 145/360 (40%), Gaps = 75/360 (20%)
Query: 310 MSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLP-CKLEGILGSP 368
+ Y+ QLE K N + Q+L + IG L ++ +G
Sbjct: 87 LDYNKQLEMKTNEVKQVLSR------------------------IGKLEDVEVHDTIGMD 122
Query: 369 LVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEF 428
YRNK +F + + P +GF +++ V C EI K I + +
Sbjct: 123 NPYRYRNKAQFPIQKN-NGVPIIGF----YKKKTHDVISTEKCVIQHEINDKIVKIIKTY 177
Query: 429 LQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSAT 488
++ + +++ ++G R L + G + EVM++
Sbjct: 178 IRAYKVSIYDEKTHTGLIRHLVTKIGFTT------------------KEVMVVL------ 213
Query: 489 FDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKAD 548
V N K A+ + P LV+ +Q +N + + D
Sbjct: 214 ----VANGNKLPYLKELASVLKENIPGFK--TLVVNVNQKDTNAILGKENIVIY----GD 263
Query: 549 GEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDV 608
G +I+D I +L F ISP +FFQVN + + LY ++ADL +FD+
Sbjct: 264 G-----------KINDYIGDLVFEISPLSFFQVNPVQTKVLYDKALEYADLNETDTVFDI 312
Query: 609 CCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
CG GTI L LA + V GIE+ A+ DA NA++N + N F KAE+++ + ++
Sbjct: 313 YCGIGTISLFLAQKAKKVYGIEIIDDAIKDAKINAKLNNMHNAEFYVGKAEEIVPKMYRE 372
>gi|390934502|ref|YP_006392007.1| TrmA family RNA methyltransferase [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389570003|gb|AFK86408.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 452
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 83/302 (27%), Positives = 131/302 (43%), Gaps = 66/302 (21%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKPTVGFML-GNFREGVTAVEEPVDCPNVSE--IAC 419
GI+GSP V YRNK E++ G +G + G + + +T DC V IAC
Sbjct: 114 GIVGSPDVFSYRNKMEYTFGKDDNDATQLGLHVKGRYYDIITTD----DCRIVDSDFIAC 169
Query: 420 KYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVM 479
+ + +Q LP +N + G+ R L +R+ + G E+ I+ V S++
Sbjct: 170 LKNVL--NYTRQQGLPHYNIKTHEGYMRYLVIRKAANTG--------EILINIVTTSQLK 219
Query: 480 -----LIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
L+ ++ +A + +V
Sbjct: 220 HDFSNLVNELINAKLNGKLV---------------------------------------- 239
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSL 592
L ++ +D E +V+ R I + I L+F IS +FFQ N+ AEKLYS+
Sbjct: 240 --GILHTVNDSYSDAVKCEKLEVLYGRDYIMEEILGLKFKISAFSFFQTNSKGAEKLYSV 297
Query: 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCR 652
++A + LFD+ CGTGTIG+ +A V+GIE+ AV A NA +NG+ N
Sbjct: 298 AREFAGEISNKTLFDLYCGTGTIGIIMAPLAKKVVGIELVEEAVDAARENARLNGLSNIH 357
Query: 653 FV 654
F+
Sbjct: 358 FI 359
>gi|288905623|ref|YP_003430845.1| RNA methyltransferase [Streptococcus gallolyticus UCN34]
gi|386338072|ref|YP_006034241.1| tRNA (Uracil-5-)-methyltransferase family protein [Streptococcus
gallolyticus subsp. gallolyticus ATCC 43143]
gi|288732349|emb|CBI13921.1| putative RNA methyltransferase [Streptococcus gallolyticus UCN34]
gi|334280708|dbj|BAK28282.1| tRNA (Uracil-5-)-methyltransferase family protein [Streptococcus
gallolyticus subsp. gallolyticus ATCC 43143]
Length = 456
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 66/111 (59%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I DS+ ++ IS +F+QVNT AE+LY D++DL P+ ++ D G GTIGL+ A
Sbjct: 265 IVDSMLGNQYEISARSFYQVNTEMAERLYQTAIDFSDLTPEDIVIDAYSGIGTIGLSFAK 324
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
V V G+E+ AV DA RNA +NGI N +V AE M + KD + P
Sbjct: 325 NVKAVYGVEVIEEAVEDAKRNAALNGITNAHYVADSAEHAMATWSKDGIKP 375
>gi|238917056|ref|YP_002930573.1| hypothetical protein EUBELI_01126 [Eubacterium eligens ATCC 27750]
gi|238872416|gb|ACR72126.1| Hypothetical protein EUBELI_01126 [Eubacterium eligens ATCC 27750]
Length = 389
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 63/107 (58%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I D + RF ISPT+F+Q+N EKLY AD+ + + D CG GTIG+ +
Sbjct: 203 IEDVLCGCRFRISPTSFYQINHQQTEKLYKKAIQLADISKNDTVIDAYCGIGTIGIVASK 262
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
+ G VIG+E+N+ AVSDA NA IN IKN FV A A D + K+
Sbjct: 263 KAGKVIGVELNSEAVSDAKINASINNIKNVTFVNADAGDFLVEYAKN 309
>gi|386362916|ref|YP_006072247.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pyogenes
Alab49]
gi|350277325|gb|AEQ24693.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pyogenes
Alab49]
Length = 452
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 65/111 (58%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I DS+ + IS +F+QVNT+ AEKLY ++DL D ++ D G GTIGL+ A
Sbjct: 265 ITDSMLGNNYAISAQSFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFAK 324
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
V V G+E+ +AV DA +NA +NGI N F+ AE M + KD + P
Sbjct: 325 TVKAVYGVEVIEAAVRDAQQNAALNGITNAYFIADTAEHAMATWTKDGIKP 375
>gi|313898104|ref|ZP_07831643.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. HGF2]
gi|312957132|gb|EFR38761.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. HGF2]
Length = 444
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 95/369 (25%), Positives = 145/369 (39%), Gaps = 87/369 (23%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L HMSY+ QL KK + ++++ I L ++ +LG
Sbjct: 82 LQHMSYAEQLRFKKQKVQDVMQR------------------------IAHLDIEVWDVLG 117
Query: 367 -SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF 425
YRNK + VG + K GF +R A+ + C SE + ++
Sbjct: 118 MQDCYTNYRNKGQIPVGVE-KGKTVTGF----YRINSNAIIDTDTCLIQSE---RINAVL 169
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
QE + ++ +++N+ +R L ++ S EVM++ V
Sbjct: 170 QEMRK-----LFEKYQNAKLFRHLLIKHAFSS------------------DEVMVVWIVR 206
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLP--LTALVIQDHQGVSNVAPADAPLRLLS 543
S K TA+ P + + L ++D NV D L
Sbjct: 207 SFQIPHG----------KEMVQELTAALPFVKSVILNLNVRD----DNVILGDKEQLLFG 252
Query: 544 IPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDT 603
E I DSI +L+F IS +F+QVN E LY ++A L
Sbjct: 253 ---------------ERAITDSIHDLKFSISSKSFYQVNPRQTEILYGKALEFAKLTGKE 297
Query: 604 LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMG 663
+ D+ CG GTI + LA R V GIE+ A+ DA +NA +NGI N FVC+ A D
Sbjct: 298 TVLDLYCGVGTISMFLAQRAKHVTGIEIVPQAIRDARKNAALNGIANIEFVCSDAADYAK 357
Query: 664 SLLKDYLNP 672
L + +P
Sbjct: 358 KLCEQGAHP 366
>gi|21910560|ref|NP_664828.1| TrmA family RNA methyltransferase [Streptococcus pyogenes MGAS315]
gi|21904760|gb|AAM79631.1| putative RNA methyltransferase, TrmA family [Streptococcus pyogenes
MGAS315]
Length = 409
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 92/373 (24%), Positives = 149/373 (39%), Gaps = 75/373 (20%)
Query: 301 RDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCK 360
R + L H++Y QL KK + L K+ G+S
Sbjct: 35 RTGIADLGHLTYEDQLTFKKKQVQDSLYKIA---------GIS--------------DVT 71
Query: 361 LEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
+E +G YRNK + V + + GF + + + + + + +
Sbjct: 72 VESTIGMTEPLAYRNKAQVPVR-RVNGQLETGFFRKHSHDLIPISDYYIQDKEIDRLI-- 128
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
+ ++ L++ D+ ++ + +G R + VR G G E+ML
Sbjct: 129 --NFTRDLLRRFDIKPYDETEQTGLLRNIVVRRGHYSG------------------EMML 168
Query: 481 IAQVSS-ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL 539
+ + F V+ E++ +AF P +IQ N+ +
Sbjct: 169 VLVTTRPKVFR---VDQVIEKIVEAF-----------PAVVSIIQ------NINDKNTN- 207
Query: 540 RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
+I D + D I DS+ + IS +F+QVNT+ AEKLY ++DL
Sbjct: 208 ---AIFGKDFKTLYGKDT----ITDSMLGNNYAISAQSFYQVNTVMAEKLYQTAIAFSDL 260
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659
D ++ D G GTIGL+ A V V G+E+ +AV DA NA +NGI N FV AE
Sbjct: 261 SKDDIVIDAYSGIGTIGLSFAKTVKAVYGVEVIEAAVRDAQHNAALNGITNAYFVADTAE 320
Query: 660 DVMGSLLKDYLNP 672
M + KD + P
Sbjct: 321 HAMATWAKDGIKP 333
>gi|377832238|ref|ZP_09815200.1| RNA methyltransferase [Lactobacillus mucosae LM1]
gi|377553874|gb|EHT15591.1| RNA methyltransferase [Lactobacillus mucosae LM1]
Length = 457
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 98/414 (23%), Positives = 164/414 (39%), Gaps = 78/414 (18%)
Query: 263 AVPGELAEAHASSNGHEDGNGNDEGLAGDG-SGLKVKSARDV---VTPLAHMSYSVQLEH 318
+PGE AE + G + L +++K AR + + PL +SY QL+
Sbjct: 41 VLPGEQAEIKVVKVTTKFAWGELQELKTKSPDRVEIKDARYLKTGIAPLGILSYPAQLKF 100
Query: 319 KKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCE 378
K++ I ++LKK + K P +G YRNK +
Sbjct: 101 KQHQIEELLKKAHLDEIKVMPT------------------------MGMDQPYQYRNKAQ 136
Query: 379 FSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWN 438
V Y ++ + GF + V + + P + + ++ L++ ++ ++
Sbjct: 137 VPVKY-MKGQLQTGFYKRGSHDLVPIEDFYIQDPKIDAAIL----VVRDLLRKYNIRAYD 191
Query: 439 RFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEF 498
G R + VR G E+M++ V N++
Sbjct: 192 ERTGRGCIRTVMVRRGYYS------------------HEIMVVL----------VTNTKQ 223
Query: 499 ERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVV 558
A+ AAG + P + ++V + +N +LL + E
Sbjct: 224 LPHAEEIAAGIVSGVPEV--KSIVQNVNTKRTN--------KLLGL-------ENHTLWG 266
Query: 559 EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLT 618
IHD + + F ISP +F+QVN EKLY + A+L + D CG GTI L
Sbjct: 267 SDTIHDQLLGIDFTISPLSFYQVNPQQTEKLYQTAIEAAELDGTQTVIDAYCGIGTISLA 326
Query: 619 LAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
+A V G+E+ +A+ DA +NA++N I+N F KAE+ M K+ L P
Sbjct: 327 VAKHAKKVYGVEIVPAAIEDAKQNAKVNQIENAEFAVGKAEEQMAKWQKEGLKP 380
>gi|293375600|ref|ZP_06621874.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sanguinis
PC909]
gi|292645817|gb|EFF63853.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sanguinis
PC909]
Length = 459
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 76/122 (62%), Gaps = 1/122 (0%)
Query: 552 EESNDVV-EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCC 610
E++N + E I+D ++ +RF ISP +F+QVN + E LYS ++A L + ++FD C
Sbjct: 260 EKTNIIYGEGYIYDEMNGIRFAISPRSFYQVNPVQTETLYSKAVEFAGLTGEEIVFDAYC 319
Query: 611 GTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYL 670
G GTI L LA V G+E+ A++DA+ NA++NG +N F K+E+V+ + ++ +
Sbjct: 320 GIGTITLFLAQHAKKVYGVEIIPEAIADANMNAKLNGFENTEFAVGKSEEVIPAWIEQGI 379
Query: 671 NP 672
P
Sbjct: 380 VP 381
>gi|331083695|ref|ZP_08332806.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 6_1_63FAA]
gi|330403906|gb|EGG83458.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 6_1_63FAA]
Length = 458
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 85/364 (23%), Positives = 147/364 (40%), Gaps = 77/364 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLP-CKLEGIL 365
L ++Y QLE KKN + L++ IGG +E ++
Sbjct: 84 LQFLTYEKQLEFKKNKVVGNLER------------------------IGGFSDIPVEKVI 119
Query: 366 GSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF 425
G YRNK +F VG + GF G ++ +C E+ + +
Sbjct: 120 GMENPWRYRNKAQFPVGKDKEGNLITGFYAGR----THSIIPNTNCYLGVEVNEEILNAV 175
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
++++++ + ++ G R + +R G E+M+ ++
Sbjct: 176 LDYMRENHVEPYDEVTGKGLVRHILIRYG------------------FKTKEIMVCIIIN 217
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLP-LTALVIQDHQGVSNVAPADAPLRLLSI 544
+A AG + +T++ + + +NV + L L
Sbjct: 218 GRKIPNA--------------AGLVEKLKDISGMTSITLNVNTKRNNVILGNEILPLWG- 262
Query: 545 PKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTL 604
+ I D I +++ ISP +F+QVN + EKLY +A L
Sbjct: 263 --------------KDYITDYIGEVKYQISPLSFYQVNPVQTEKLYGTALKYAGLTGKET 308
Query: 605 LFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664
++D+ CG GTI L LA + V G+E+ +A+ DA +NAEINGI+N F KAE+V+ +
Sbjct: 309 VWDLYCGIGTISLFLAQKAKKVYGVEIVPAAIEDARKNAEINGIENAEFFVGKAEEVLPA 368
Query: 665 LLKD 668
K+
Sbjct: 369 KYKE 372
>gi|289449975|ref|YP_003474465.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridiales
genomosp. BVAB3 str. UPII9-5]
gi|289184522|gb|ADC90947.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridiales
genomosp. BVAB3 str. UPII9-5]
Length = 458
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 64/109 (58%)
Query: 564 DSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV 623
++I L F +S +F QVNTL AEKLY + A L + + D CG GTI L LA R
Sbjct: 273 ETIGGLTFMVSWQSFLQVNTLQAEKLYQTVLEVAGLSGNETVIDAYCGIGTISLYLARRA 332
Query: 624 GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
V G+E+ +A+ A RNAE+NGI N FVC KAE V+ + + L P
Sbjct: 333 KFVYGVEIVPAAIEMAERNAEVNGIHNASFVCGKAETVIPQWVAEGLAP 381
>gi|261367933|ref|ZP_05980816.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Subdoligranulum
variabile DSM 15176]
gi|282570747|gb|EFB76282.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Subdoligranulum
variabile DSM 15176]
Length = 381
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 63/112 (56%)
Query: 561 RIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLA 620
++ D++ LRF IS +F+QVN L E LY ADL + D CG GTIGL A
Sbjct: 192 QVLDTLCGLRFAISSRSFYQVNPLQTEVLYRTAMKLADLSGKETVVDAYCGIGTIGLCAA 251
Query: 621 HRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
G V+GIE N +AV DA NA NG++N RF CA A + M + L+P
Sbjct: 252 SSSGQVLGIERNPAAVRDAIANARRNGVRNARFTCADATEWMEQAARQALHP 303
>gi|226323498|ref|ZP_03799016.1| hypothetical protein COPCOM_01273 [Coprococcus comes ATCC 27758]
gi|225208182|gb|EEG90536.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Coprococcus comes ATCC
27758]
Length = 471
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 75/149 (50%), Gaps = 15/149 (10%)
Query: 559 EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLT 618
+ I D I N+++ ISP +F+QVN + E LY ++A L ++DV CG GTI L
Sbjct: 271 QTYITDYIGNVKYQISPLSFYQVNPVQTEVLYGTALEYAGLTGKETVWDVYCGIGTISLF 330
Query: 619 LAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDE 678
LA + V G+E+ A+ DA NAEIN I N F KAE+V+ DY E
Sbjct: 331 LAQKAQKVYGVEIVPQAIEDAKHNAEINEITNAEFFVGKAEEVLPEYYADYAK------E 384
Query: 679 HASEGSNKEITIAEEKDSSRDNVPENEGC 707
H E + ++ + + P +GC
Sbjct: 385 HPGEHARADVIVVD---------PPRKGC 404
>gi|331266416|ref|YP_004326046.1| SAM-dependent methyltransferase [Streptococcus oralis Uo5]
gi|326683088|emb|CBZ00705.1| SAM-dependent methyltransferase related to tRNA
(uracil-5-)-methyltransferase [Streptococcus oralis Uo5]
Length = 452
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 68/111 (61%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I D + F IS AF+QVNT AEKLY D+A+L D ++ D G GTIGL++A
Sbjct: 265 ITDQMLGNDFQISGPAFYQVNTEMAEKLYQTAIDFAELREDDVVIDAYSGIGTIGLSVAK 324
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
V V G+E+ AV ++ +NAE+NGI N +VC AE+ M + LK+ + P
Sbjct: 325 HVKEVYGVEVIPEAVENSQKNAELNGISNAHYVCDTAENAMKNWLKEGIQP 375
>gi|418325968|ref|ZP_12937165.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU071]
gi|365226999|gb|EHM68207.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU071]
Length = 456
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 91/360 (25%), Positives = 148/360 (41%), Gaps = 80/360 (22%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L HM+Y QL+ KK + + RK ++ E I
Sbjct: 85 LQHMTYRAQLDMKKEQVVNLFH------RKGPFENTAIKETI------------------ 120
Query: 367 SPLVN--GYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASI 424
+VN YRNK + VG S + +GF +R+ + + C + + +
Sbjct: 121 -GMVNPWRYRNKSQIPVGQSNSNQVIMGF----YRQRSHDIIDMDSCLIQDKQHQEVMNR 175
Query: 425 FQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQV 484
+ +L + ++ ++N +G R L VR G + E+M+I
Sbjct: 176 VKYWLNELNISIYNEKTKTGLIRHLVVRTG------------------YHTDEMMVIFVT 217
Query: 485 SSATFDDA--VVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLL 542
+ ATF + +VN +L K F P+ +T++ + SNV + L
Sbjct: 218 NGATFKQSELLVN----KLKKEF--------PN--ITSIKQNINNSHSNVIMGRQSMTLY 263
Query: 543 SIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPD 602
+ +I D +S + + IS +F+Q+N+ EKLY ++A L
Sbjct: 264 G---------------KDKIEDQLSEVTYHISDLSFYQINSAQTEKLYQQALNYAQLTGK 308
Query: 603 TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
++ D CG GTIGL +A V G+E+ A+ DA NA N +KN F C KAEDV+
Sbjct: 309 EIVLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFECGKAEDVI 368
>gi|339640888|ref|ZP_08662332.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. oral
taxon 056 str. F0418]
gi|339454157|gb|EGP66772.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. oral
taxon 056 str. F0418]
Length = 452
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 98/416 (23%), Positives = 164/416 (39%), Gaps = 77/416 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDGS----GLKVKSARDVVTPLAHMSYSVQL 316
E+A+PGE+ + G G E L + R + L H++Y QL
Sbjct: 33 ENALPGEIIRMRVLKINKKIGYGKVEEFLRTSDQRNENLDMAYLRTGIADLGHLNYPAQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K+ + L K+ + P + + + PL GYRNK
Sbjct: 93 DFKRKQVKDSLYKIASLSDVEVPPTLGMEQ---------------------PL--GYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + + + + P + ++ ++ L++ DL
Sbjct: 130 AQVPVR-RVNGQLETGFFRKNSHDLLPIEDFYIQAPVIDQVIL----FTRDLLRRFDLKP 184
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
++ + SG + NL V + ++++ F V+
Sbjct: 185 YDEKEQSGL-----------------IRNLVVRRGHYSGQIMVILVTTRPKVFR---VDQ 224
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESND 556
E+L K F P V+Q+ + A + L
Sbjct: 225 LIEQLIKQF-----------PEIVSVMQNINDQNTNAIFGKEWKTLY------------- 260
Query: 557 VVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIG 616
+ I D + F IS AF+QVN AEKLY D+++L + ++ D G GTIG
Sbjct: 261 -GQDYITDQMLGNDFQISGPAFYQVNAEMAEKLYQTAIDFSELTANDVVLDAYSGIGTIG 319
Query: 617 LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
L++A +V V G+E+ AV ++ +NAEINGI N +VC AE+ M + LKD + P
Sbjct: 320 LSVAKQVKQVYGVEVIPEAVENSRKNAEINGITNASYVCDTAENAMKNWLKDGIQP 375
>gi|317473452|ref|ZP_07932746.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerostipes sp.
3_2_56FAA]
gi|316899102|gb|EFV21122.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerostipes sp.
3_2_56FAA]
Length = 458
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 90/360 (25%), Positives = 146/360 (40%), Gaps = 77/360 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H+SY QLE+K N + L+++ N SL +E I G
Sbjct: 84 LQHLSYEKQLEYKFNKVKNCLERIG-----GIENAGSL----------------MEPIYG 122
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
YRNK +F VG + K GF G + + P EI K
Sbjct: 123 MDEPYYYRNKAQFPVGRNKDGKLITGFYAGRTHSIIDCTHCSIQHPVNEEILSK----VL 178
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISE---VNISEVM-LIA 482
++++++ + ++ + G R + R G G+ + L VN + +N+SE++ +
Sbjct: 179 DYMERNHVEPYDEKNHRGLVRHIMTRVGFVTGEIMVC--LVVNGRKKDLLNLSELVDSLK 236
Query: 483 QVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLL 542
++ T VNS +E+ + + V P
Sbjct: 237 EIEGMT--SICVNSNWEKTNRIMG-----------------------NKVEEVYGP---- 267
Query: 543 SIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPD 602
A I+D I N+++ I P +FFQVN + LY +A L +
Sbjct: 268 -----------------AYIYDYIGNVKYQIGPLSFFQVNPRQTKVLYEKALQYAGLCGN 310
Query: 603 TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
++D+ CG GTI L LA + V G+E+ A+ DA NAE+N + N +F KAE+V+
Sbjct: 311 ETVWDLYCGIGTISLFLAQKAKQVYGVEIVKEAIEDARLNAEMNHMDNVQFFVGKAEEVL 370
>gi|421277318|ref|ZP_15728138.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
SPAR10]
gi|395876599|gb|EJG87675.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
SPAR10]
Length = 455
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 67/111 (60%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I D + F IS AF+QVNT AEKLY D+A L D ++ D G GTIGL++A
Sbjct: 265 ITDQMLGNSFQISGPAFYQVNTEMAEKLYQTAIDFAGLSEDDVVIDAYSGIGTIGLSVAK 324
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
V V G+E+ AV ++ +NAE+NGI N +VC AE+ M + LK+ + P
Sbjct: 325 HVKEVYGVEVIPEAVENSQKNAELNGITNAHYVCDTAENAMKNWLKEGIQP 375
>gi|206901370|ref|YP_002250424.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dictyoglomus
thermophilum H-6-12]
gi|206740473|gb|ACI19531.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dictyoglomus
thermophilum H-6-12]
Length = 448
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 87/372 (23%), Positives = 156/372 (41%), Gaps = 96/372 (25%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H++Y QLE KK + K++ + ++ P ++G
Sbjct: 83 LMHVNYEYQLELKKMMVEDAFKRIGKIEKEVNP------------------------VIG 118
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
YRNK + VG K +LG ++ + + C E K +
Sbjct: 119 MENPYRYRNKAKIPVG-----KRRGKIVLGFYKPNTHYIVDINKCIVHHEDTDKVIETTK 173
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
E +++ + V+N +++G R + VR + ++M+I VS
Sbjct: 174 EAIKKFHIEVYNELQHTGLLRFVVVRRSFA------------------FDDLMVIL-VSK 214
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
D+A +++A+ + L+ L
Sbjct: 215 GMIDNA------KKVARFYKY------------------------------KLKNLKSFY 238
Query: 547 ADGEPEESNDVV--EAR-------IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWA 597
+ P+ +N++ E+R I D I + F ISP +FFQ+N++ EKLY+ ++
Sbjct: 239 VNINPKRTNEIFGEESRLILGDETIRDKIGDFVFEISPVSFFQINSIQTEKLYNKALEY- 297
Query: 598 DLGPDT-LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCA 656
L P++ L+FD CG GTI L L+ + V GIE+ +A+ DA +NA +N +KN F+
Sbjct: 298 -LSPNSRLVFDAYCGIGTISLFLSKKAEKVYGIEVERTAIEDAWKNARLNKVKNVEFIWG 356
Query: 657 KAEDVMGSLLKD 668
++E+V+ L++D
Sbjct: 357 RSEEVIPRLIED 368
>gi|194466906|ref|ZP_03072893.1| RNA methyltransferase, TrmA family [Lactobacillus reuteri 100-23]
gi|194453942|gb|EDX42839.1| RNA methyltransferase, TrmA family [Lactobacillus reuteri 100-23]
Length = 456
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 91/370 (24%), Positives = 141/370 (38%), Gaps = 76/370 (20%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPN-GVSLPEWIMKSREIGGLPCKLE 362
+ PL H+ Y QL+ K++ IA++L K + + P G+ P
Sbjct: 85 IAPLGHLKYEAQLKFKQHQIAELLAKAHLDEIEVLPTTGMKKP----------------- 127
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYA 422
YRNK + V ++ + GF V + + P + K
Sbjct: 128 --------YHYRNKAQVPVK-MVRGQLETGFYKRGSHNLVPIEDFYIQDPEID----KAI 174
Query: 423 SIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIA 482
+ ++ L+Q + ++ G R + VR G E+M++
Sbjct: 175 VVVRDLLRQYHITPYDEQTGKGVIRTVMVRRGYYS------------------HEMMVVL 216
Query: 483 QVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLL 542
V N++ + K G A P + I D + +N D L
Sbjct: 217 ----------VTNTKRLPMEKQIVDGIVAGVPEVKSIVQNINDKR--TNRLLGDKNKTLW 264
Query: 543 SIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPD 602
AD IHD + + F ISP +F+QVN E+LY D A L +
Sbjct: 265 G---AD------------EIHDQLLGIDFAISPLSFYQVNPQQTERLYQTAIDNAGLDGN 309
Query: 603 TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
+ D CG GTI L +A V G+E+ +A+ DA NA+ NGIKN +FV KAE+
Sbjct: 310 QTVIDAYCGIGTISLAVAKHAKQVYGVEIVPAAIEDAKHNAKRNGIKNAKFVVGKAEEQF 369
Query: 663 GSLLKDYLNP 672
+ L P
Sbjct: 370 AKWQAEGLKP 379
>gi|81429088|ref|YP_396088.1| TrmA family RNA methyltransferase [Lactobacillus sakei subsp. sakei
23K]
gi|78610730|emb|CAI55781.1| Putative RNA methyltransferase, TrmA family [Lactobacillus sakei
subsp. sakei 23K]
Length = 463
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 96/372 (25%), Positives = 160/372 (43%), Gaps = 83/372 (22%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H+SY QL KK+ + Q L+K + NG + E + G+
Sbjct: 91 LEHLSYPGQLAFKKDMMIQALEKFKPHGY----NGYQVTETV-------GMENPWH---- 135
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTA--VEEPVDCPNV---SEIACKY 421
YRNK +F V +G LG G+ A +D P +++ +
Sbjct: 136 ------YRNKAQFQVR-------QLGDHLG---AGLYAPSSHTLIDLPEFATQTDLTMRI 179
Query: 422 ASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLI 481
+ ++ +PV++ KN+G + + VRE S G+
Sbjct: 180 IRTVLKLVEDLGIPVFDEEKNAGILKTIVVRESFSTGE---------------------- 217
Query: 482 AQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSNVAPADAPLR 540
AQ++ T NS +L K +A TA LP ++Q+ ++G + + D +
Sbjct: 218 AQLTFIT------NSP--KLPKKYAL-ITAIQAELPEVVSIMQNVNKGKNVLVWGDQTMH 268
Query: 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG 600
L + I ++++ ++F ++ AFFQ+N + K+Y+L + DL
Sbjct: 269 LAG---------------QETIMENLNGVQFELTARAFFQLNPVQTAKMYNLVKEALDLT 313
Query: 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660
P+ L D CG GTIGL+LA++V V G++ A ++ A NAEINGI N + AED
Sbjct: 314 PEDRLVDAYCGVGTIGLSLANQVAEVRGMDTIADSIEAAKHNAEINGIDNVDYAVGAAED 373
Query: 661 VMGSLLKDYLNP 672
++ L + P
Sbjct: 374 LLPEWLDNGFVP 385
>gi|310827128|ref|YP_003959485.1| RNA methyltransferase [Eubacterium limosum KIST612]
gi|308738862|gb|ADO36522.1| RNA methyltransferase [Eubacterium limosum KIST612]
Length = 446
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 66/112 (58%)
Query: 561 RIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLA 620
+I + I +L F ISP +FFQVNT + LY L A L LFD+ CGTGTIGL LA
Sbjct: 258 QIEERIGDLSFLISPNSFFQVNTRQTKVLYDLVKRMATLTGAETLFDLYCGTGTIGLYLA 317
Query: 621 HRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
V GIE+ +AV DA NAE N IKN RF+ K+E L ++ ++P
Sbjct: 318 REAARVYGIEIVENAVLDAQENAERNQIKNIRFIQGKSETEAPKLAEEGVHP 369
>gi|169346803|ref|ZP_02865754.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens C str. JGS1495]
gi|169297085|gb|EDS79207.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens C str. JGS1495]
Length = 451
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 84/309 (27%), Positives = 136/309 (44%), Gaps = 57/309 (18%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQA-KPTVGFMLGNFREGVTAVEEPV----DCPNVSEI 417
GI SP+ YRNK E++ G + + T+G + G+ V++ V D N+ +
Sbjct: 114 GIETSPIQWEYRNKMEYTFGDEEKGGELTIGMHMKGKSFGIVNVDKCVLVDEDFRNILDT 173
Query: 418 ACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISE 477
KY ++ LP + +G+ R L VR K + E + VN+
Sbjct: 174 TVKY-------FREKGLPFYKIMPRTGYLRYLVVR------KSVKTEEILVNL------- 213
Query: 478 VMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADA 537
+ FD +EF L K L +++ + +S
Sbjct: 214 ----VTTTQIDFD----LTEFTELIKGLNLKG-------KLKSIIHTESDALSEAVI--- 255
Query: 538 PLRLLSIPKADGEPEESNDVV-EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDW 596
PE+ N + + I +++ L F ISP +FFQ N+L AEKLYS+ D+
Sbjct: 256 -------------PEKVNILYGDDFITENLLGLNFKISPFSFFQTNSLGAEKLYSIVRDF 302
Query: 597 ADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCA 656
+ ++FD+ CGTGTIG A + VIGIE+ A A+ NA++NG+ NC F+
Sbjct: 303 MGAADNKVVFDLYCGTGTIGQIAAGKASKVIGIELIEEAAMAANENAKLNGLNNCNFIAG 362
Query: 657 KAEDVMGSL 665
+V+ ++
Sbjct: 363 DVAEVIKTV 371
>gi|260587415|ref|ZP_05853328.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Blautia hansenii DSM
20583]
gi|260542282|gb|EEX22851.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Blautia hansenii DSM
20583]
Length = 475
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 85/364 (23%), Positives = 147/364 (40%), Gaps = 77/364 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLP-CKLEGIL 365
L ++Y QLE KKN + L++ IGG +E ++
Sbjct: 101 LQFLTYEKQLEFKKNKVVGNLER------------------------IGGFSDIPVEKVI 136
Query: 366 GSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF 425
G YRNK +F VG + GF G ++ +C E+ + +
Sbjct: 137 GMENPWRYRNKAQFPVGKDKEGNLITGFYAGR----THSIIPNTNCYLGVEVNEEILNAV 192
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
++++++ + ++ G R + +R G E+M+ ++
Sbjct: 193 LDYMRENHVEPYDEVTGKGLVRHILIRYG------------------FKTKEIMVCIIIN 234
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLP-LTALVIQDHQGVSNVAPADAPLRLLSI 544
+A AG + +T++ + + +NV + L L
Sbjct: 235 GRKIPNA--------------AGLVEKLKDISGMTSITLNVNTKRNNVILGNEILPLWG- 279
Query: 545 PKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTL 604
+ I D I +++ ISP +F+QVN + EKLY +A L
Sbjct: 280 --------------KDYITDYIGEVKYQISPLSFYQVNPVQTEKLYGTALKYAGLTGKET 325
Query: 605 LFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664
++D+ CG GTI L LA + V G+E+ +A+ DA +NAEINGI+N F KAE+V+ +
Sbjct: 326 VWDLYCGIGTISLFLAQKAKKVYGVEIVPAAIEDARKNAEINGIENAEFFVGKAEEVLPA 385
Query: 665 LLKD 668
K+
Sbjct: 386 KYKE 389
>gi|146318257|ref|YP_001197969.1| SAM-dependent methyltransferase related to tRNA
(uracil-5-)-methyltransferase [Streptococcus suis
05ZYH33]
gi|146320451|ref|YP_001200162.1| SAM-dependent methyltransferase related to tRNA
(uracil-5-)-methyltransferase [Streptococcus suis
98HAH33]
gi|253751426|ref|YP_003024567.1| RNA methyltransferase [Streptococcus suis SC84]
gi|253753327|ref|YP_003026468.1| RNA methyltransferase [Streptococcus suis P1/7]
gi|253755843|ref|YP_003028983.1| RNA methyltransferase [Streptococcus suis BM407]
gi|386577592|ref|YP_006073998.1| tRNA (uracil-5-)-methyltransferase/TrmA [Streptococcus suis GZ1]
gi|386581597|ref|YP_006078001.1| SAM-dependent methyltransferase-related tRNA
(uracil-5-)-methyltransferase [Streptococcus suis SS12]
gi|386587830|ref|YP_006084231.1| SAM-dependent methyltransferase [Streptococcus suis A7]
gi|403061231|ref|YP_006649447.1| SAM-dependent methyltransferase [Streptococcus suis S735]
gi|145689063|gb|ABP89569.1| SAM-dependent methyltransferase related to tRNA
(uracil-5-)-methyltransferase [Streptococcus suis
05ZYH33]
gi|145691257|gb|ABP91762.1| SAM-dependent methyltransferase related to tRNA
(uracil-5-)-methyltransferase [Streptococcus suis
98HAH33]
gi|251815715|emb|CAZ51315.1| putative RNA methyltransferase [Streptococcus suis SC84]
gi|251818307|emb|CAZ56118.1| putative RNA methyltransferase [Streptococcus suis BM407]
gi|251819573|emb|CAR45243.1| putative RNA methyltransferase [Streptococcus suis P1/7]
gi|292558055|gb|ADE31056.1| tRNA (uracil-5-)-methyltransferase/TrmA [Streptococcus suis GZ1]
gi|353733743|gb|AER14753.1| SAM-dependent methyltransferase-related tRNA
(uracil-5-)-methyltransferase [Streptococcus suis SS12]
gi|354984991|gb|AER43889.1| SAM-dependent methyltransferase related to tRNA
(uracil-5-)-methyltransferase [Streptococcus suis A7]
gi|402808557|gb|AFR00049.1| SAM-dependent methyltransferase [Streptococcus suis S735]
Length = 452
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 92/378 (24%), Positives = 146/378 (38%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L R + L H++Y QL KK + L+K+ + A + + +
Sbjct: 71 LDFTYLRTGIADLGHLTYPAQLAFKKKQVENSLRKIAGISEIAVADTLGMD--------- 121
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
SPL YRNK V + + GF N + V + + +
Sbjct: 122 ------------SPL--AYRNKAAVPVR-RVNGQLETGFFRKNSHDLVPIEDFYIQHKEI 166
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+ ++ L++ DL ++ + +G R + VR G G+ +
Sbjct: 167 DALVLAT----RDLLRKLDLKPYDEKEQTGLVRNIVVRRGHYSGQLM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++ F V + ERL F P ++Q+ + A
Sbjct: 210 ----LVLVTTRPKIFR---VETLIERLTSQF-----------PNLVSIVQNINDQNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
RLL + I D++ F IS +F+QVNT AEKLY
Sbjct: 252 FGQEFRLLHGSET--------------IADTMLGNEFEISAPSFYQVNTEMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D+A+L D ++ D G GTIGL+ A +V V G+E+ AV D+ +NA NGI N +V
Sbjct: 298 DFAELSADDVVIDAYSGIGTIGLSFAKQVKHVYGVEVVEKAVLDSQKNAARNGIDNVTYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
C AE M + D + P
Sbjct: 358 CDSAESAMQKWVADGVKP 375
>gi|333395713|ref|ZP_08477530.1| tRNA (Uracil-5-)-methyltransferase [Lactobacillus coryniformis
subsp. coryniformis KCTC 3167]
gi|420146682|ref|ZP_14654071.1| tRNA (Uracil-5-)-methyltransferase [Lactobacillus coryniformis
subsp. coryniformis CECT 5711]
gi|398401012|gb|EJN54530.1| tRNA (Uracil-5-)-methyltransferase [Lactobacillus coryniformis
subsp. coryniformis CECT 5711]
Length = 454
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 87/360 (24%), Positives = 141/360 (39%), Gaps = 77/360 (21%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ PL H+SY+ QL+ K+ + + +K +I LP
Sbjct: 85 IAPLGHLSYAAQLKFKQQQLRNVYQK--------------------NHLDIEVLPT---- 120
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
+G GYRNK + V + + GF + + + + P +
Sbjct: 121 -IGMADPKGYRNKAQIPVR-QVNGQLETGFYRKRSHQLIPLEDFYIQDPEIDRAIV---- 174
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
+ ++ L+Q +P ++ +N G R + VR G + + M+I
Sbjct: 175 VVRDLLRQYHVPAYDEARNRGIMRNIMVRRG-------------------HFTHEMMIVL 215
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRL-L 542
++ + +L + T LP ++Q +V P + L
Sbjct: 216 ITR--------TKDIPQLQNIISGIVT----KLPKVVSIMQ------SVVPKPTNVVLGR 257
Query: 543 SIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPD 602
++ K G+ IHD I F +S +F+QVN L E+LY D A L
Sbjct: 258 TVKKLYGK---------TYIHDQILGHTFDVSALSFYQVNPLQTERLYQTAIDAAHLTGK 308
Query: 603 TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
+ D G GTI L+LA V G+E+ +AV+DA RNA+ NGI N +F AE VM
Sbjct: 309 ETVIDAYSGIGTISLSLAKHAKYVYGVEVTEAAVADAKRNAKHNGIHNVKFQLGLAEKVM 368
>gi|386579528|ref|YP_006075933.1| hypothetical protein SSUJS14_0565 [Streptococcus suis JS14]
gi|319757720|gb|ADV69662.1| hypothetical protein SSUJS14_0565 [Streptococcus suis JS14]
Length = 453
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 92/378 (24%), Positives = 146/378 (38%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L R + L H++Y QL KK + L+K+ + A + + +
Sbjct: 71 LDFTYLRTGIADLGHLTYPAQLAFKKKQVENSLRKIAGISEIAVADTLGMD--------- 121
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
SPL YRNK V + + GF N + V + + +
Sbjct: 122 ------------SPL--AYRNKAAVPVR-RVNGQLETGFFRKNSHDLVPIEDFYIQHKEI 166
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+ ++ L++ DL ++ + +G R + VR G G+ +
Sbjct: 167 DALVLAT----RDLLRKLDLKPYDEKEQTGLVRNIVVRRGHYSGQLM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++ F V + ERL F P ++Q+ + A
Sbjct: 210 ----LVLVTTRPKIFR---VETLIERLTSQF-----------PNLVSIVQNINDQNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
RLL + I D++ F IS +F+QVNT AEKLY
Sbjct: 252 FGQEFRLLHGSET--------------IADTMLGNEFEISAPSFYQVNTEMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D+A+L D ++ D G GTIGL+ A +V V G+E+ AV D+ +NA NGI N +V
Sbjct: 298 DFAELSADDVVIDAYSGIGTIGLSFAKQVKHVYGVEVVEKAVLDSQKNAARNGIDNVTYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
C AE M + D + P
Sbjct: 358 CDSAESAMQKWVADGVKP 375
>gi|257087679|ref|ZP_05582040.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis D6]
gi|422724515|ref|ZP_16780991.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX2137]
gi|424672107|ref|ZP_18109088.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
599]
gi|256995709|gb|EEU83011.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis D6]
gi|315025522|gb|EFT37454.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX2137]
gi|402357152|gb|EJU91866.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
599]
Length = 456
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 100/389 (25%), Positives = 159/389 (40%), Gaps = 87/389 (22%)
Query: 298 KSARDVVTP------------LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLP 345
K+A+D V P L H++Y QL+ KK+ + Q L K + A L
Sbjct: 66 KAAKDRVVPPCPVYETCGGCQLQHLAYKAQLDFKKDLLKQALNKF----KPANYQNYEL- 120
Query: 346 EWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAV 405
+ IG + +P YRNK +F + + + G + + V
Sbjct: 121 -----RKTIG---------MENPW--NYRNKAQFQLR-QIDGQVEAGLYQADSHQLV--- 160
Query: 406 EEPVD-CPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVE 464
P+D C K + + L LP+++ KNSG +R L VR G G
Sbjct: 161 --PIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTLMVRVGIQTG------ 212
Query: 465 NLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQ 524
EV ++ S F + E++ +A + LP ++Q
Sbjct: 213 ------------EVQVVFITQSLKF------PQKEKMVRAI-------NEQLPEVVSIMQ 247
Query: 525 DHQGV-SNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNT 583
+ Q +++ D L L +ES I + I+++ F +SP AFFQ+N
Sbjct: 248 NVQNKKTSLVMGDDTLHLWG--------KES-------IEEHINDVVFDLSPRAFFQLNP 292
Query: 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNA 643
E LY+ G DL P+ + D CG GTIGL+LA + V G++ +A+ DA NA
Sbjct: 293 EQTEVLYNEGIKALDLQPNETVVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNA 352
Query: 644 EINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
+ G+ N + AED++ K+ P
Sbjct: 353 KRLGVTNTHYAVGTAEDLLPKWFKEGFKP 381
>gi|417935684|ref|ZP_12579001.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus infantis
X]
gi|343402593|gb|EGV15098.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus infantis
X]
Length = 456
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 94/378 (24%), Positives = 151/378 (39%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L + R + L H++Y QL+ K + L K+
Sbjct: 71 LDLAYLRSGIADLGHLAYPEQLKFKTKQVKDSLYKIA----------------------- 107
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
G ++ LG YRNK + V + GF N + + + + P +
Sbjct: 108 GITDVEVSDTLGMENPVKYRNKAQVPVR-RVNGVLETGFFRKNSHDLMPLEDFYIQDPVI 166
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
++ + ++ L++ DL ++ + SG R L VR G G+ +
Sbjct: 167 DQVILE----LRDLLRRYDLKPYDEKEQSGLIRNLVVRRGHHSGQIM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++ F V E++ K F P V+Q+ ++ A
Sbjct: 210 ----VILVTTRPKIFR---VEQLIEQVIKQF-----------PEIVSVMQNINDQNSNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
R+L G+ I D + F IS AF+QVNT AEKLY
Sbjct: 252 FGKEWRVLY-----GQD---------YIMDQMLGNSFQISGPAFYQVNTEMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D+A+L D ++ D G GTIGL++A V V G+E+ AV ++ +NAE+N I N +V
Sbjct: 298 DFAELSEDDVVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKNAELNCITNAHYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
C AE+ M S LK+ + P
Sbjct: 358 CNTAENAMKSWLKEGIQP 375
>gi|422699326|ref|ZP_16757197.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1346]
gi|315172186|gb|EFU16203.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1346]
Length = 504
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 100/417 (23%), Positives = 166/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGND-EGLAGDGSGLKVKS---ARDVVTPLAHMSYSVQL 316
E+A+PGE E G G G L + VK + ++PL H++Y QL
Sbjct: 84 ENALPGEKLEIKVLKTGKSFGYGKVLTVLKSSEQRVPVKDENFTKVGISPLQHLAYGAQL 143
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K + +++++ + LPE + LP +G YRNK
Sbjct: 144 SFKTQQVENVMQRVAK-----------LPE-------VPVLPT-----IGMNDPWHYRNK 180
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + + + P + K I +++ +
Sbjct: 181 AQIPVR-KIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKY----SVKP 235
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
+N N+G R + VR G G+ + V+LI + +V
Sbjct: 236 YNESDNTGNLRHIVVRRGYHTGEMM----------------VVLITRTPKLFPISKIVPD 279
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLLSIPKADGEPEESN 555
E ++P ++Q+ + +NV D + L
Sbjct: 280 ILE---------------AIPEVVSIVQNVNPKRTNVIFGDETILLHG------------ 312
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
+I D+I +L+F IS +F+QVN E +Y ++A L + ++ D CG GTI
Sbjct: 313 ---SEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTI 369
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GLTLA V GIE+ AV DA NA++N I+N F AE+++ L+++ L P
Sbjct: 370 GLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEELLPKLVENGLQP 426
>gi|386729585|ref|YP_006195968.1| 23S rRNA m(5)U1939 methyltransferase [Staphylococcus aureus subsp.
aureus 71193]
gi|387603229|ref|YP_005734750.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus ST398]
gi|404479243|ref|YP_006710673.1| RNA methyltransferase [Staphylococcus aureus 08BA02176]
gi|418311506|ref|ZP_12923029.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21331]
gi|418980102|ref|ZP_13527889.1| 23S rRNA m(5)U 1939 methyltransferase [Staphylococcus aureus subsp.
aureus DR10]
gi|283471167|emb|CAQ50378.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus ST398]
gi|365234162|gb|EHM75102.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21331]
gi|379992133|gb|EIA13591.1| 23S rRNA m(5)U 1939 methyltransferase [Staphylococcus aureus subsp.
aureus DR10]
gi|384230878|gb|AFH70125.1| 23S rRNA m(5)U 1939 methyltransferase [Staphylococcus aureus subsp.
aureus 71193]
gi|404440732|gb|AFR73925.1| putative RNA methyltransferase [Staphylococcus aureus 08BA02176]
Length = 453
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 90/356 (25%), Positives = 144/356 (40%), Gaps = 72/356 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H+SY QLE KK + + + RKA + K+ +G
Sbjct: 85 LQHLSYEAQLEMKKEQVINLFQ------RKAHFDN-----------------SKINDTVG 121
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
YRNK + VG + Q + +GF + + + E+ K SI +
Sbjct: 122 MTDPWRYRNKSQIPVGKNEQNEVIMGFYRQRSHDIIDMESCLIQDSQHQEVMNKVKSILK 181
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
+ ++ ++ G R L VR G + E+M+I +
Sbjct: 182 DL----NVSIYQEQLKKGLMRHLVVRTGY------------------HTDEMMVIFVTNG 219
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
+ N+ E++ AF P++ I D SNV + L
Sbjct: 220 KKWPQK--NAVVEKILDAF--------PNVTSIKQNINDSH--SNVIMGRQSITLYG--- 264
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
+ I D +++ F IS +F+Q+N+ EKLY+ ++A+L + ++
Sbjct: 265 ------------KDTIIDQLTDSTFKISDQSFYQINSEQTEKLYNKAIEYAELTGNEVVL 312
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
D CGTGTIGL +A V G+E+ SA+ DA +NA IN N FVC KAE+V+
Sbjct: 313 DTYCGTGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVI 368
>gi|422732009|ref|ZP_16788355.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0645]
gi|422738857|ref|ZP_16794043.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX2141]
gi|315145231|gb|EFT89247.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX2141]
gi|315161930|gb|EFU05947.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0645]
Length = 468
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 100/417 (23%), Positives = 165/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGND-EGLAGDGSGLKVKS---ARDVVTPLAHMSYSVQL 316
E+A+PGE E G G G L + VK + ++PL H++Y QL
Sbjct: 48 ENALPGEKLEIKVLKTGKSFGYGKVLTVLKSSEQRVPVKDENFTKVGISPLQHLAYGAQL 107
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K + +++++ + LPE + LP +G YRNK
Sbjct: 108 SFKTQQVENVMQRVAK-----------LPE-------VPVLPT-----IGMNDPWHYRNK 144
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + + + P + K I +++ +
Sbjct: 145 AQIPVR-KIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKY----SVKP 199
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
+N NSG R + VR G G+ + V+LI + +V
Sbjct: 200 YNESDNSGNLRHIVVRRGYHTGEMM----------------VVLITRTPKLFPISKIVPD 243
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLLSIPKADGEPEESN 555
E ++P ++Q+ + +NV D + L
Sbjct: 244 ILE---------------AIPEVVSIVQNVNPKRTNVIFGDETILLHG------------ 276
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
+I D+I +L+F IS +F+QVN E +Y ++A L + ++ D CG GTI
Sbjct: 277 ---SEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTI 333
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL LA V GIE+ AV DA NA++N I+N F AE+++ L+++ L P
Sbjct: 334 GLNLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEELLPKLVENGLQP 390
>gi|307288671|ref|ZP_07568652.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0109]
gi|422703178|ref|ZP_16761003.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1302]
gi|306500425|gb|EFM69761.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0109]
gi|315165278|gb|EFU09295.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1302]
Length = 456
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 100/389 (25%), Positives = 158/389 (40%), Gaps = 87/389 (22%)
Query: 298 KSARDVVTP------------LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLP 345
K+A+D V P L H++Y QL+ KK+ + Q L K + A L
Sbjct: 66 KAAKDRVVPPCPVYETCGGCQLQHLAYKAQLDFKKDLLKQALNKF----KPANYQNYEL- 120
Query: 346 EWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAV 405
+ IG + +P YRNK +F + + + G + + V
Sbjct: 121 -----RKTIG---------MENPW--NYRNKAQFQLR-QIDGQVEAGLYQADSHQLV--- 160
Query: 406 EEPVD-CPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVE 464
P+D C K + + L LP+++ KNSG +R L VR G G
Sbjct: 161 --PIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTLMVRVGIQTG------ 212
Query: 465 NLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQ 524
EV ++ S F + E++ +A + LP ++Q
Sbjct: 213 ------------EVQVVFITQSKKF------PQKEKMVRAI-------NEQLPEVVSIMQ 247
Query: 525 DHQGV-SNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNT 583
+ Q +++ D L L +ES I + I+++ F +SP AFFQ+N
Sbjct: 248 NVQNKKTSLVMGDDTLHLWG--------KES-------IEEHINDVVFDLSPRAFFQLNP 292
Query: 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNA 643
E LY+ G DL P+ + D CG GTIGL LA + V G++ +A+ DA NA
Sbjct: 293 EQTEVLYNEGIKALDLQPNETVVDAYCGVGTIGLNLAKQAHQVRGMDTIPAAIDDARFNA 352
Query: 644 EINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
+ G+ N + AED++ K+ P
Sbjct: 353 KRLGVTNTHYAVGTAEDLLPKWFKEGFKP 381
>gi|402303639|ref|ZP_10822729.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sp.
FOBRC9]
gi|400378034|gb|EJP30898.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sp.
FOBRC9]
Length = 457
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 98/362 (27%), Positives = 144/362 (39%), Gaps = 76/362 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLP-CKLEGIL 365
L H+SY QL K+ Q++ +T IG LP ++ L
Sbjct: 88 LQHLSYEAQLTAKR---LQVVDAMT---------------------HIGKLPHVPVKETL 123
Query: 366 GSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF 425
G+ YRNK +F VG Q + ++G F +G + + DC E A+
Sbjct: 124 GAASPWNYRNKMQFPVGIH-QGQ----IVVGCFAQGSHRIIDTEDCHIQREGNNALANAV 178
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
++ + + +PV+N + G R + R G+ E+M + +
Sbjct: 179 RDIVTKLRIPVYNEDTHRGILRHIVGRVGQG-------------------DELMAVIVTA 219
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
+ E R+ + LP + Q+ Q N LL
Sbjct: 220 AKELPR---KKELIRMMR----------ERLPQLVSIQQNIQTYRNNVVMGRDTVLLW-- 264
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
G+P I D++ L F ISP +FFQVNT A LY +ADL +
Sbjct: 265 ---GKPT---------IKDTLGKLSFHISPRSFFQVNTAQAAVLYEQALQYADLHGTETV 312
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
D CGTGTI L LA + V GIE+ A+ DA +NA NGIKN F+ A VM S+
Sbjct: 313 IDAYCGTGTITLFLAQQAWNVYGIEIVRPAILDARKNACDNGIKNAEFIVGDATAVMPSI 372
Query: 666 LK 667
+
Sbjct: 373 YR 374
>gi|255282151|ref|ZP_05346706.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bryantella
formatexigens DSM 14469]
gi|255267099|gb|EET60304.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Marvinbryantia
formatexigens DSM 14469]
Length = 533
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 104/412 (25%), Positives = 172/412 (41%), Gaps = 74/412 (17%)
Query: 298 KSARDVVTPLAHMS-----------YSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPE 346
KS ++ +P H + Y QL K+ + ++L ++ PE
Sbjct: 64 KSPLEIASPCPHFADCGGCTYQNLPYEAQLALKEQQVKKLLDEVC-------------PE 110
Query: 347 WIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFM--LGNFREGVTA 404
++ EGILGSP +GYRNK EFS G P M G+F + VT
Sbjct: 111 YV------------FEGILGSPEQSGYRNKMEFSFGDEYFGGPLALGMHKRGSFYDIVTV 158
Query: 405 VEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPL--- 461
C V E + + ++ +++ P +++ +++G+ R L VR+ + G+ L
Sbjct: 159 S----GCRIVDEDFRRILACVLDYFRETQTPFYHKLRHTGYLRHLLVRKAKKTGEILIDL 214
Query: 462 -DVENLEVNISEVNISE----VMLI-----AQVSSATFDDAVVNSEFERLAKAFAAGATA 511
LE+ +E + ++ V I AQ +A D+ V + + AA
Sbjct: 215 VTTSRLELPGAEDDAAQEKEAVPRIGESENAQGCAAQEDETVQRTGESENTQGCAAQEDE 274
Query: 512 SSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGE----------------PEESN 555
+ P + + Q++ G + A L + DG +
Sbjct: 275 TVPRIGESENA-QENGGQTGAALLQGLAERLRALQLDGTIAGILHTVNDSLADVIKSDRT 333
Query: 556 DVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTG 613
D++ + ++ + LRF ISP +FFQ N+L AE LY + D +FD+ GTG
Sbjct: 334 DILYGKDFFYEELLGLRFKISPFSFFQTNSLGAEVLYDRARSYVGETKDKTIFDLYSGTG 393
Query: 614 TIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
TI LA V+G+E+ AV+ A NA NG+ NC F+ V+ S+
Sbjct: 394 TIAQILAPVARKVVGVEIVEEAVAAAKENAAANGLDNCEFLAGDVLKVIDSV 445
>gi|330719374|ref|ZP_08313974.1| 23S rRNA (uracil-5-)-methyltransferase [Leuconostoc fallax KCTC
3537]
Length = 460
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 64/105 (60%)
Query: 559 EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLT 618
EA IHD++ L F I P +F+QVN + EKLY+L A L P ++ D G GTIG++
Sbjct: 267 EAAIHDTLLGLDFIIGPNSFYQVNPIMTEKLYTLAAQKAQLKPTDIVIDAYSGIGTIGIS 326
Query: 619 LAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMG 663
+A++V V+G+E+ A AV+DA N + N I N F+ A + M
Sbjct: 327 VANKVKQVLGVEVVAGAVADAQLNVDTNHIDNATFLLNDAPEQMA 371
>gi|227529794|ref|ZP_03959843.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus vaginalis ATCC
49540]
gi|227350278|gb|EEJ40569.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus vaginalis ATCC
49540]
Length = 464
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 99/377 (26%), Positives = 145/377 (38%), Gaps = 83/377 (22%)
Query: 298 KSARDVVTP------------LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLP 345
K++RD V P L ++Y QL K+ + L+K P G
Sbjct: 73 KTSRDRVEPRDSYADVAGGFELERLAYPAQLRFKRQVVLDSLEKFK-------PYG---- 121
Query: 346 EWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAV 405
R P + +P GYRNK F V + G N + V
Sbjct: 122 -----YRNYDVRPT-----IAAPHEYGYRNKASFQVR-MIDGHVAAGLYKANSHDLVDIQ 170
Query: 406 EEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVEN 465
E V PN ++ ++ +PV++ +NSG + L VRE + G
Sbjct: 171 ECAVQMPNTMKVIRTVVQAIEDL----QIPVYDEERNSGIIKTLVVRESAATG------- 219
Query: 466 LEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQD 525
EV ++ LI S ++ + E+L K +
Sbjct: 220 ------EVQLT---LITNTSKLPHKRQLLEAIQEQLPKVVSV------------------ 252
Query: 526 HQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLA 585
+ NV P D PL GE + + + I +S+ L F +S +F Q+N
Sbjct: 253 ---MQNVNPGDTPLIW-------GE-QMIHLAGQEYITESLMGLDFRLSARSFLQLNPEQ 301
Query: 586 AEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEI 645
E LY +L P L D G GTIGL+LA+RV V G+E AV+DA +NA +
Sbjct: 302 TETLYEEAAKALELSPGDTLIDAYAGIGTIGLSLANRVKEVWGMETIPEAVADAKQNANL 361
Query: 646 NGIKNCRFVCAKAEDVM 662
NGI N + AEDV+
Sbjct: 362 NGITNAHYEVGSAEDVI 378
>gi|301060814|ref|ZP_07201628.1| 23S rRNA (uracil-5-)-methyltransferase RumA [delta proteobacterium
NaphS2]
gi|300445063|gb|EFK09014.1| 23S rRNA (uracil-5-)-methyltransferase RumA [delta proteobacterium
NaphS2]
Length = 466
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 88/319 (27%), Positives = 134/319 (42%), Gaps = 59/319 (18%)
Query: 361 LEGILGSPLV-----NGYRNKCEFSVGYSLQAKPTV--------GFMLGNFREGVT-AVE 406
L+ ++ PL+ GYRNK EFS P F LG G V
Sbjct: 112 LKNVVVRPLIPSENIFGYRNKMEFSFSDRRWYLPDELPFEKKDENFALGLHVPGTYHKVI 171
Query: 407 EPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENL 466
+ C + ++++ S++PV+ + G+WR LT+R + ++
Sbjct: 172 DMEACLLQQQTGNDILRAVAQYVKNSNVPVYGLKSHEGYWRYLTIRHSEA------FDHW 225
Query: 467 EVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDH 526
VN+ V+S D + ++ E L + F P V+ +
Sbjct: 226 MVNL-------------VTSKN-DASTLHPLAEHLCRKF-----------PRIKTVVNNI 260
Query: 527 QGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAA 586
G R SI + E + D I+D I F +S +FFQ NT AA
Sbjct: 261 NG-----------RKASIAVGEKEKVLTGD---GFINDKIGPFSFRVSANSFFQTNTSAA 306
Query: 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN 646
KLY +AD + D+ GTGTI + L+ RV V GIE++ SA +DA RNA +N
Sbjct: 307 LKLYEQVLRYADPKGKEQVLDLYSGTGTIPIFLSDRVRSVTGIEISESATADAKRNALVN 366
Query: 647 GIKNCRFVCAKAEDVMGSL 665
+ NCRFVC + +G++
Sbjct: 367 NVHNCRFVCGDIREKLGTV 385
>gi|424835274|ref|ZP_18259939.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sporogenes
PA 3679]
gi|365978067|gb|EHN14162.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sporogenes
PA 3679]
Length = 459
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 91/364 (25%), Positives = 144/364 (39%), Gaps = 78/364 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGL---PCKLEG 363
+ H SY QL+ KK + LK+ IG L K+E
Sbjct: 88 VQHYSYKAQLDFKKRRVIDSLKR------------------------IGKLDIDKIKIED 123
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
+G YRNK + V + + + +GF +R V + +C E A +
Sbjct: 124 TIGMENPYRYRNKIQMPVRFE-KDEIKIGF----YRPRTHEVADVKECFIQDEQADEIIQ 178
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
I + ++ + ++ +N GF R + VR+ E+ML+
Sbjct: 179 IIRNWMAKHNISAYNEQMGKGFIRHIMVRKAFKN------------------KELMLVI- 219
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLL 542
V N E E K LP +IQ+ + +NV + + L
Sbjct: 220 ---------VTNKEKEIPYKEELIDEVIKE--LPNMKSIIQNVNSKKTNVILGEKCITLW 268
Query: 543 SIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPD 602
+ I D I +F ISP +FFQVN + E LY ++ADL +
Sbjct: 269 G---------------KDTITDYIDKFKFNISPLSFFQVNPIQTEVLYKKALEFADLKGE 313
Query: 603 TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
++FD CGTGTI L L+ + V G+E+ A+ +A NA+ N I N F K+E+++
Sbjct: 314 EIVFDAYCGTGTISLFLSQKAKKVYGVEIIKEAIDNAKDNAKENKIDNAEFFVGKSEEII 373
Query: 663 GSLL 666
L+
Sbjct: 374 PDLI 377
>gi|255094342|ref|ZP_05323820.1| putative RNA methyltransferase [Clostridium difficile CIP 107932]
gi|255316095|ref|ZP_05357678.1| putative RNA methyltransferase [Clostridium difficile QCD-76w55]
gi|255518756|ref|ZP_05386432.1| putative RNA methyltransferase [Clostridium difficile QCD-97b34]
gi|260684898|ref|YP_003216183.1| RNA methyltransferase [Clostridium difficile CD196]
gi|260688556|ref|YP_003219690.1| RNA methyltransferase [Clostridium difficile R20291]
gi|384362567|ref|YP_006200419.1| RNA methyltransferase [Clostridium difficile BI1]
gi|260211061|emb|CBA66419.1| putative RNA methyltransferase [Clostridium difficile CD196]
gi|260214573|emb|CBE07127.1| putative RNA methyltransferase [Clostridium difficile R20291]
Length = 452
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 87/360 (24%), Positives = 145/360 (40%), Gaps = 75/360 (20%)
Query: 310 MSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLP-CKLEGILGSP 368
+ Y+ QLE K N + Q+L + IG L ++ +G
Sbjct: 87 LDYNKQLEMKTNEVKQVLSR------------------------IGKLEDVEVHDTIGMD 122
Query: 369 LVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEF 428
YRNK +F + + P +GF +++ V C EI K I + +
Sbjct: 123 NPYRYRNKAQFPIQKN-NGIPIIGF----YKKKTHDVISTEKCVIQHEINDKIVKIIKTY 177
Query: 429 LQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSAT 488
++ + +++ ++G R L + G + EVM++
Sbjct: 178 IRAYKVSIYDEKTHTGLIRHLVTKIGFTT------------------KEVMVVL------ 213
Query: 489 FDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKAD 548
V N K A+ + P LV+ +Q +N + + D
Sbjct: 214 ----VANGNKLPYLKELASVLKENIPGFK--TLVVNVNQKDTNAILGRENIVIY----GD 263
Query: 549 GEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDV 608
G +I+D I +L F ISP +FFQVN + + LY ++A+L +FD+
Sbjct: 264 G-----------KINDYIGDLVFEISPLSFFQVNPVQTKVLYDKALEYANLNDTDTVFDI 312
Query: 609 CCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
CG GTI L LA + V GIE+ A+ DA NA++N I N F KAE+++ + ++
Sbjct: 313 YCGIGTISLFLAQKAKKVYGIEIIDDAIKDAKINAKLNNIHNAEFYVGKAEEIVPKMYRE 372
>gi|293401235|ref|ZP_06645379.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
bacterium 5_2_54FAA]
gi|291305361|gb|EFE46606.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
bacterium 5_2_54FAA]
Length = 535
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 85/352 (24%), Positives = 142/352 (40%), Gaps = 82/352 (23%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L HMSY QL KK + +++++ + L ++E +LG
Sbjct: 84 LQHMSYKEQLAFKKQKVQDVIERIAK------------------------LDVQVEDVLG 119
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
+ YRNK + VG ++ + GF +R + + C SE K ++ Q
Sbjct: 120 MAQPDHYRNKGQIPVG-VVKGQVVTGF----YRINSNTIIDTDSCGIQSE---KINAVLQ 171
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
++ ++ N+G +R L ++ G EVM++ V
Sbjct: 172 TMR-----SLFKKYGNAGVFRHLLIKHAFVTG------------------EVMVVWIVRQ 208
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
F + E + + + P + L + + NV L
Sbjct: 209 KKF------AHREEMVQEL----VQTIPEIKSVVLNLNTRE--DNVILGKQEEVLYG--- 253
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
E+ I D I+ L+F IS +F+QVN + + LY ++ +L + ++
Sbjct: 254 ------------ESFITDEINGLKFHISAKSFYQVNPVQTKVLYGKALEFCNLKGNEIVI 301
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658
D+ CG GTI + LA + G VIGIE+ AV DA NA +NG+ N FVC+ A
Sbjct: 302 DLYCGVGTISMFLAQKAGKVIGIEIVEQAVRDARENAALNGLDNVEFVCSDA 353
>gi|257080993|ref|ZP_05575354.1| RNA methyltransferase [Enterococcus faecalis E1Sol]
gi|256989023|gb|EEU76325.1| RNA methyltransferase [Enterococcus faecalis E1Sol]
Length = 457
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 99/417 (23%), Positives = 165/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGND-EGLAGDGSGLKVKS---ARDVVTPLAHMSYSVQL 316
E+A+PGE E G G G L + VK + ++PL H++Y QL
Sbjct: 37 ENALPGEKLEIKVLKTGKSFGYGKVLTVLKSSEQRVPVKDENFTKVGISPLQHLAYGAQL 96
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K + +++++ + LPE + LP +G YRNK
Sbjct: 97 SFKTQQVENVMQRVAK-----------LPE-------VPVLPT-----IGMNDPWHYRNK 133
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + + + P + K I + + +
Sbjct: 134 AQIPVR-KIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRRY----SVKP 188
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
+N N+G R + VR G G+ + V+LI + +V
Sbjct: 189 YNESDNTGNLRHIVVRRGYHTGEMM----------------VVLITRTPKLFPISKIVPD 232
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLLSIPKADGEPEESN 555
E ++P ++Q+ + +NV D + L
Sbjct: 233 ILE---------------AIPEVVSIVQNVNPKRTNVIFGDETILLHG------------ 265
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
+I D+I +L+F IS +F+QVN E +Y ++A L + ++ D CG GTI
Sbjct: 266 ---SEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTI 322
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GLTLA + GIE+ AV DA NA++N I+N F AE+++ L+++ L P
Sbjct: 323 GLTLAQDAKQIYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEELLPKLVENGLQP 379
>gi|313892229|ref|ZP_07825822.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dialister
microaerophilus UPII 345-E]
gi|313119367|gb|EFR42566.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dialister
microaerophilus UPII 345-E]
Length = 545
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 87/318 (27%), Positives = 131/318 (41%), Gaps = 58/318 (18%)
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
++ + + GYRNK +G + K G+ ++ G + DC +E K A
Sbjct: 119 VVSATHIVGYRNKMSIPIG-TQNGKAVSGY----YKSGTHEIIPSTDCMIQNETNNKLAK 173
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
Q+F+ ++ + V+N + G R + R G GK L+A
Sbjct: 174 FAQDFINKNKITVYNEKTHKGSVRHIVGRIG-DGGK--------------------LMAV 212
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLS 543
+ ++T + E + K S P + +QD + +NV + +
Sbjct: 213 IVTSTNELPCKEKWIEEMRK--------SVPEVISIYHNVQDKK--TNVILGNKMEHIWG 262
Query: 544 IPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDT 603
E + SI L F ISP +FFQVN AEKLY D+A+L D
Sbjct: 263 ---------------EKTLKASIGKLTFEISPYSFFQVNKEQAEKLYEKALDFANLFGDE 307
Query: 604 LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMG 663
+ D CGTGTI L LA + VIGIE+ A+ +A NA+ N IKN F A +
Sbjct: 308 TVIDAYCGTGTISLYLAQKAKHVIGIEIIKDAIENAKENAKRNKIKNVEFHAADVAKYLP 367
Query: 664 SLLKD-------YLNPLR 674
L K L+P+R
Sbjct: 368 ELAKKGIKAEVMVLDPVR 385
>gi|260161759|emb|CAZ39303.1| hypothetical protein [Streptococcus suis]
gi|313575341|emb|CBR26870.1| SAM-dependent methyltransferase related to tRNA
(uracil-5-)-methyltransferase [Streptococcus phage
phi-SsUD.1]
Length = 451
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 92/378 (24%), Positives = 146/378 (38%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L R + L H++Y QL KK + L+K+ + A + + +
Sbjct: 71 LDFTYLRTGIADLGHLTYPAQLAFKKKQVENSLRKIAGISEIAVADTLGM---------- 120
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
SPL YRNK V + + GF N + V + + +
Sbjct: 121 -----------DSPL--AYRNKAAVPVR-RVNGQLETGFFRKNSHDLVPIEDFYIQHKEI 166
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+ ++ L++ DL ++ + +G R + VR G G+ +
Sbjct: 167 DALVLAT----RDLLRKLDLKPYDEKEQTGLVRNIVVRRGHYSGQLM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++ F V + ERL F P ++Q+ + A
Sbjct: 210 ----LVLVTTRPKIFR---VETLIERLTSQF-----------PNLVSIVQNINDQNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
RLL + I D++ F IS +F+QVNT AEKLY
Sbjct: 252 FGQEFRLLHGSET--------------IADTMLGNEFEISAPSFYQVNTEMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D+A+L D ++ D G GTIGL+ A +V V G+E+ AV D+ +NA NGI N +V
Sbjct: 298 DFAELSADDVVIDAYSGIGTIGLSFAKQVKHVYGVEVVEKAVLDSQKNAARNGIDNVTYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
C AE M + D + P
Sbjct: 358 CDSAESAMQKWVADGVKP 375
>gi|225026873|ref|ZP_03716065.1| hypothetical protein EUBHAL_01127 [Eubacterium hallii DSM 3353]
gi|224955797|gb|EEG37006.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium hallii DSM
3353]
Length = 471
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/307 (24%), Positives = 130/307 (42%), Gaps = 56/307 (18%)
Query: 360 KLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVT----AVEEPVDCPNVS 415
K+E + G YRNK +F VGY + GF G V A++ V P V
Sbjct: 128 KIEPVYGMEEPWHYRNKAQFPVGYDKEGNLVAGFYAGRTHSIVANTNCAIQAEVTHPIVE 187
Query: 416 EIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNI 475
++ +++++ + ++ +SG R + R G + G
Sbjct: 188 KVLT--------YMKENKISAYDEKNHSGLVRHILTRIGFTTG----------------- 222
Query: 476 SEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPA 535
E+M+ V+ + + + K T +T++++ + +N
Sbjct: 223 -EIMVCLIVNGT-------KKQLKHIDKLVDDLKTIEG----MTSIIVNTNTDKTNKILG 270
Query: 536 DAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGD 595
LR ++ D I D I N+++ I P +F+QVN + LYS +
Sbjct: 271 ---LRCETVWGQD------------YIEDYIGNIKYQIGPLSFYQVNPQQTKVLYSKALE 315
Query: 596 WADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVC 655
+A+L L++D+ CG GTI L LA + V G+E+ A+ DA RNA +N + N F
Sbjct: 316 YAELKGQELVWDLYCGIGTISLFLAQKAKQVYGVEIIKEAIDDARRNAALNHMDNVEFFV 375
Query: 656 AKAEDVM 662
KAE+V+
Sbjct: 376 GKAEEVV 382
>gi|400290035|ref|ZP_10792062.1| putative RNA methyltransferase [Streptococcus ratti FA-1 = DSM
20564]
gi|399920826|gb|EJN93643.1| putative RNA methyltransferase [Streptococcus ratti FA-1 = DSM
20564]
Length = 451
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 67/111 (60%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I D++ RF IS +F+QVNT+ AEKLY D+++L D ++ D G GTIGL+ A
Sbjct: 265 IEDTMLGNRFAISAQSFYQVNTVMAEKLYQTAIDFSELTADDVVIDAYSGIGTIGLSFAK 324
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
+V V G+E+ +AV DA +NA +N I N +V AE+ M + K + P
Sbjct: 325 QVKAVYGVEVVEAAVRDAQKNAALNKITNAHYVADSAENAMANWSKQGIKP 375
>gi|423082865|ref|ZP_17071448.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium difficile
002-P50-2011]
gi|423086315|ref|ZP_17074724.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium difficile
050-P50-2011]
gi|357547184|gb|EHJ29078.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium difficile
002-P50-2011]
gi|357547302|gb|EHJ29192.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium difficile
050-P50-2011]
Length = 452
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 87/359 (24%), Positives = 147/359 (40%), Gaps = 73/359 (20%)
Query: 310 MSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPL 369
+ Y+ QLE K N + Q+L ++ + E + IG + +P
Sbjct: 87 LDYNKQLEMKTNEVKQVLSRIGK------------LEDVEVHDTIG---------MDNPY 125
Query: 370 VNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFL 429
YRNK +F + + P +GF +++ V C EI K I + ++
Sbjct: 126 --RYRNKAQFPIQKN-NGIPIIGF----YKKKTHDVISTEKCVIQHEINDKIVKIIKTYI 178
Query: 430 QQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATF 489
+ + +++ ++G R L + G + EVM++
Sbjct: 179 RAYKVSIYDEKTHTGLIRHLVTKIGFTT------------------KEVMVVL------- 213
Query: 490 DDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADG 549
V N K A+ + P LV+ +Q +N + + DG
Sbjct: 214 ---VANGNKLPYLKELASVLKENIPGFK--TLVVNVNQKNTNAILGRENIVIY----GDG 264
Query: 550 EPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVC 609
+I+D I +L F ISP +FFQVN + + LY ++A+L +FD+
Sbjct: 265 -----------KINDYIGDLVFEISPLSFFQVNPVQTKVLYDKALEYANLNDTDTVFDIY 313
Query: 610 CGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
CG GTI L LA + V GIE+ A+ DA NA++N I N F KAE+++ + ++
Sbjct: 314 CGIGTISLFLAQKAKKVYGIEIIDDAIKDAKINAKLNNIHNAEFYVGKAEEIVPKMYRE 372
>gi|187776694|ref|ZP_02993167.1| hypothetical protein CLOSPO_00209 [Clostridium sporogenes ATCC
15579]
gi|187775353|gb|EDU39155.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sporogenes
ATCC 15579]
Length = 459
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 93/364 (25%), Positives = 144/364 (39%), Gaps = 78/364 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGL---PCKLEG 363
+ H SY QL+ KK + LK+ IG L K+E
Sbjct: 88 VQHYSYKAQLDFKKRRVIDSLKR------------------------IGKLDIDKIKIED 123
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
+G YRNK + V + + + +GF +R V + +C E A K
Sbjct: 124 TIGMENPYRYRNKIQMPVRFE-KDEIKIGF----YRPRTHEVADVKECFIQDEQADKIIQ 178
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
I + ++ + ++ +N GF R + VR+ E+ML+
Sbjct: 179 IIRNWMGKYNISAYNEEIGKGFIRHIMVRKAFKN------------------KELMLVI- 219
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLL 542
V N E E K LP +IQ+ + +NV + + L
Sbjct: 220 ---------VTNKEKEIPHKEELIDEVIKE--LPNMKSIIQNVNSKKTNVILGEKCITLW 268
Query: 543 SIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPD 602
+ I D I +F ISP +FFQVN + E LY ++ADL +
Sbjct: 269 G---------------KDTITDYIDKFKFNISPLSFFQVNPIQTEILYKKALEFADLKGE 313
Query: 603 TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
++FD CGTGTI L L+ + V G+E+ A+ +A NA+ N I N F K+E+V+
Sbjct: 314 EIVFDAYCGTGTISLFLSQKAKKVYGVEIIKEAIDNAKDNAKENKIDNAEFFVGKSEEVI 373
Query: 663 GSLL 666
L+
Sbjct: 374 PDLI 377
>gi|423089903|ref|ZP_17078249.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium difficile
70-100-2010]
gi|357557433|gb|EHJ38976.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium difficile
70-100-2010]
Length = 452
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 87/360 (24%), Positives = 145/360 (40%), Gaps = 75/360 (20%)
Query: 310 MSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLP-CKLEGILGSP 368
+ Y+ QLE K N + Q+L + IG L ++ +G
Sbjct: 87 LDYNKQLEMKTNEVKQVLSR------------------------IGKLEDVEVHDTIGMD 122
Query: 369 LVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEF 428
YRNK +F + + P +GF +++ V C EI K I + +
Sbjct: 123 NPYRYRNKAQFPIQKN-NGIPIIGF----YKKKTHDVISTEKCVIQHEINDKIVKIIKTY 177
Query: 429 LQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSAT 488
++ + +++ ++G R L + G + EVM++
Sbjct: 178 IRAYKVSIYDEKTHTGLIRHLVTKIGFTT------------------KEVMVVL------ 213
Query: 489 FDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKAD 548
V N K A+ + P LV+ +Q +N + + D
Sbjct: 214 ----VANGNKLPYLKELASVLKENIPGFK--TLVVNVNQKDTNAILGRENIVIY----GD 263
Query: 549 GEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDV 608
G +I+D I +L F ISP +FFQVN + + LY ++A+L +FD+
Sbjct: 264 G-----------KINDYIGDLVFEISPLSFFQVNPVQTKVLYDKALEYANLNDTDTVFDI 312
Query: 609 CCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
CG GTI L LA + V GIE+ A+ DA NA++N I N F KAE+++ + ++
Sbjct: 313 YCGIGTISLFLAQKAKKVYGIEIIDDAIKDAKINAKLNNIHNAEFYVGKAEEIVPKMYRE 372
>gi|222153321|ref|YP_002562498.1| RNA methyltransferase [Streptococcus uberis 0140J]
gi|222114134|emb|CAR42611.1| putative RNA methyltransferase [Streptococcus uberis 0140J]
Length = 453
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 66/111 (59%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I DS+ + IS +F+QVNTL AEKLY D+++L D ++ D G GTIGL+ A
Sbjct: 265 IMDSMLGNDYRISAQSFYQVNTLMAEKLYQTAIDFSELSKDDVVIDAYSGIGTIGLSFAK 324
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
V V G+E+ +AV DA +NAE NGI+N +V AE M K+ + P
Sbjct: 325 NVKKVYGVEVIEAAVKDAQKNAERNGIRNATYVVDSAESAMEKWTKEGIKP 375
>gi|374582151|ref|ZP_09655245.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Desulfosporosinus
youngiae DSM 17734]
gi|374418233|gb|EHQ90668.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Desulfosporosinus
youngiae DSM 17734]
Length = 494
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 72/143 (50%), Gaps = 2/143 (1%)
Query: 524 QDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNT 583
++ +G A A LR + + GEPE + + + F ISP AF QVN
Sbjct: 275 KEWKGAEPAKEAGAGLRWVWGINSSGEPERIAG--QGDFTEDVLGGEFKISPLAFLQVNL 332
Query: 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNA 643
+LYS DWA+L + + +D+ CG GTI L LA + V GIE N AV+DA NA
Sbjct: 333 TQTRRLYSTVLDWAELSTEKVAWDLYCGIGTITLALASKAKKVWGIEENPYAVADARENA 392
Query: 644 EINGIKNCRFVCAKAEDVMGSLL 666
NGI N F+ K ED ++
Sbjct: 393 RRNGINNAEFIAGKVEDTFRQII 415
>gi|163814586|ref|ZP_02205975.1| hypothetical protein COPEUT_00737 [Coprococcus eutactus ATCC 27759]
gi|158450221|gb|EDP27216.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Coprococcus eutactus
ATCC 27759]
Length = 507
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 67/109 (61%)
Query: 559 EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLT 618
++ I D I ++++ ISP +F+QVN + LY+ ++ADL D ++D+ CG GTI L
Sbjct: 313 QSYITDYIGDIKYQISPLSFYQVNPVQTNVLYNKALEYADLSGDETVWDMYCGIGTISLF 372
Query: 619 LAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLK 667
LA + V G+E+ A+ DA NAEINGI N F KAE+V+ + K
Sbjct: 373 LAQKAKKVYGVEIVPQAIDDARHNAEINGITNAEFFVGKAEEVVPDIYK 421
>gi|365841343|ref|ZP_09382421.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Flavonifractor plautii
ATCC 29863]
gi|364577747|gb|EHM54996.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Flavonifractor plautii
ATCC 29863]
Length = 543
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 94/350 (26%), Positives = 141/350 (40%), Gaps = 78/350 (22%)
Query: 309 HMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSP 368
HM+Y+ +LE K+ + L++L GG + ILG+
Sbjct: 89 HMNYAEELEAKRIRVEDALRRL------------------------GGADIHVSAILGAE 124
Query: 369 LVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEF 428
V+ YRNK +F V P +GF +R V + DC E A + +E+
Sbjct: 125 QVDRYRNKAQFPVAKG----PRIGF----YRPRSHDVIDVDDCLLQGEAAARLRGAVKEW 176
Query: 429 LQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSAT 488
+ + +P +N +G R + VR R+ G+ L L VN V E L+ + A
Sbjct: 177 MAEYSIPAYNERTFTGLVRHVYVRTNRA-GRSLCC--LLVNGRGVP-REAELVRALRRA- 231
Query: 489 FDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKAD 548
P+L L + + +NV D+ L
Sbjct: 232 ------------------------EPNLAGIVLGVNEKH--NNVILGDSYRALWG----- 260
Query: 549 GEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDV 608
E + D++ L F +S +F+QVN E LY ++A L + D+
Sbjct: 261 ----------EDFLSDTLCGLTFRLSVPSFYQVNPAQTEVLYGKALEFAGLTGAETVLDL 310
Query: 609 CCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658
CG GTI L +A + GMV G E+ AV DA NA+ N I N RF+CA A
Sbjct: 311 YCGIGTISLVMARKAGMVWGAEVVPQAVDDAIANAQRNHIGNARFLCADA 360
>gi|431595374|ref|ZP_19522134.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1861]
gi|430590608|gb|ELB28664.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1861]
Length = 460
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 94/367 (25%), Positives = 145/367 (39%), Gaps = 71/367 (19%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H++Y QL+ KK+ + Q L+K P G R LP +G
Sbjct: 87 LQHLAYQAQLDFKKDLLLQALEKFK-------PAGF---------RSYQLLPT-----IG 125
Query: 367 SPLVNGYRNKCEFSVGYSLQA-KPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF 425
YRNK +F + + Q K G N + V + V P ++ +
Sbjct: 126 MDDPWHYRNKAQFQLRKNKQTQKAEAGLYEANSHQLVPITDCLVQEPRTQKVMNTVVQLL 185
Query: 426 QEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485
+F D P+++ NSG +R + VR G G+ +V+ I +
Sbjct: 186 NKF----DAPIYDERTNSGIFRTIMVRIGVKTGE----------------LQVVFITRSK 225
Query: 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545
+A++ ERL + + + T+LV+ D +V +A
Sbjct: 226 KFPQKNAMIREINERLPEVVSIMQNVQAQK---TSLVMGDE--TIHVWGKEA-------- 272
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
I + I+ + F +S AFFQ+N E LY G D PD +
Sbjct: 273 ----------------IEEQINEVTFDLSTRAFFQLNPQQTELLYGEGIKALDAQPDETI 316
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
D CG GTIGL++A +V V G++ A++DA RNAE G N R+ AE V+
Sbjct: 317 VDAYCGVGTIGLSVAKKVKEVRGMDTVPQAIADAKRNAERLGYHNTRYEVGTAEQVLPKW 376
Query: 666 LKDYLNP 672
L + P
Sbjct: 377 LNEGFQP 383
>gi|307708648|ref|ZP_07645111.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
NCTC 12261]
gi|307615222|gb|EFN94432.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
NCTC 12261]
Length = 459
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 95/379 (25%), Positives = 155/379 (40%), Gaps = 75/379 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWI-MKSRE 353
L + R + L H++Y QL+ K + L K+ A + + + E + MK+
Sbjct: 74 LDLAYLRSGIADLGHLAYPEQLKFKTKQVKDSLYKI------AGIDDIEVAETLGMKN-- 125
Query: 354 IGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPN 413
P K YRNK + V + GF N + + + + P
Sbjct: 126 ----PVK------------YRNKAQVPVR-RVNGVLETGFFRKNSHDLMPLEDFFIQDPV 168
Query: 414 VSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEV 473
+ E+ ++ L++ DL ++ + +G R L VR G G+ +
Sbjct: 169 IDEVVVA----LRDLLRRYDLKPYDEKEQAGLIRNLVVRRGHYSGQIM------------ 212
Query: 474 NISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVA 533
+++ F V+ E+L K F P V+Q+ + A
Sbjct: 213 -----VILVTTRPKVFR---VDQLIEQLIKQF-----------PDITSVMQNVNDQNTNA 253
Query: 534 PADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLG 593
R L G+ I D + + I+ AF+QVNT AEKLY
Sbjct: 254 IFGKEWRTLY-----GQD---------YITDQMLGTNYQIAGPAFYQVNTEMAEKLYQTA 299
Query: 594 GDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRF 653
D+A+L D ++ D G GTIGL++A V V G+E+ AV ++ +NA++N I N +
Sbjct: 300 IDFAELKEDDVVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSKKNAQLNNISNAHY 359
Query: 654 VCAKAEDVMGSLLKDYLNP 672
VC AE+ M + LKD + P
Sbjct: 360 VCDTAENAMKNWLKDGIQP 378
>gi|418413115|ref|ZP_12986359.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis BVS058A4]
gi|410879404|gb|EKS27251.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis BVS058A4]
Length = 472
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 91/360 (25%), Positives = 148/360 (41%), Gaps = 80/360 (22%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L HM+Y QL+ KK + + RK ++ E I
Sbjct: 101 LQHMTYRAQLDMKKEQVVNLFH------RKGPFENTAIKETI------------------ 136
Query: 367 SPLVN--GYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASI 424
+VN YRNK + VG S + +GF +R+ + + C + + +
Sbjct: 137 -GMVNPWRYRNKSQIPVGQSNSNQVIMGF----YRQRSHDIIDMDSCLIQDKQHQEVMNR 191
Query: 425 FQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQV 484
+ +L + ++ ++N +G R L VR G + E+M+I
Sbjct: 192 VKYWLNELNISIYNEKTKTGLIRHLVVRTG------------------YHTDEMMVIFVT 233
Query: 485 SSATFDDA--VVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLL 542
+ ATF + +VN +L K F P+ +T++ + SNV + L
Sbjct: 234 NGATFKQSELLVN----KLKKEF--------PN--ITSIKQNINNSHSNVIMGRQSMTLY 279
Query: 543 SIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPD 602
+ +I D +S + + IS +F+Q+N+ EKLY ++A L
Sbjct: 280 G---------------KDKIEDQLSEVTYHISDLSFYQINSAQTEKLYQQALNYAQLTGK 324
Query: 603 TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
++ D CG GTIGL +A V G+E+ A+ DA NA N +KN F C KAEDV+
Sbjct: 325 EIVLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFECGKAEDVI 384
>gi|313113178|ref|ZP_07798804.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310624517|gb|EFQ07846.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 456
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 94/369 (25%), Positives = 143/369 (38%), Gaps = 76/369 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H+ Y+ +L K+ ++A + IGGL + I+G
Sbjct: 85 LRHLDYAAELRAKQENVADAFAR------------------------IGGLDVPVLPIVG 120
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
SP VN YRNK +F VG KP +GF G V DC + + +
Sbjct: 121 SPEVNRYRNKVQFPVGVDKSGKPCIGFYAGRTHRIVPCP----DCRLQPGVLNEIGNALC 176
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
F + + ++ G R + +R G G ++ + V A++ S
Sbjct: 177 AFFAEKGIQPYSEETGRGLVRHIFLRRGAHSG-------------QIMVCLVCTRAKLPS 223
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
A RL FA +T +++ + +NV
Sbjct: 224 A-------EELCTRLKAQFAE----------ITTILLNVNAKNTNVILGT---------- 256
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
E + I D++ + + P +F+QVNTLAAE LY + +A L PD LL
Sbjct: 257 -----ETHTLYGQGYIEDTLCGVPVQLGPLSFYQVNTLAAEHLYGIAAQYAQLTPDDLLL 311
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEING---IKNCRFVCAKAEDVMG 663
D+ CG GTIGL++A +IG+E+ A+ A NA G RF CA A
Sbjct: 312 DLYCGMGTIGLSMAAHCRELIGVEIVPEAIESAKANAARMGADVAAKSRFFCADAGQAAT 371
Query: 664 SLLKDYLNP 672
L + L+P
Sbjct: 372 RLAAEGLHP 380
>gi|420164219|ref|ZP_14670951.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM095]
gi|420169056|ref|ZP_14675661.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM087]
gi|420186107|ref|ZP_14692181.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM040]
gi|394232229|gb|EJD77847.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM095]
gi|394232358|gb|EJD77975.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM087]
gi|394252811|gb|EJD97834.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM040]
Length = 456
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 91/360 (25%), Positives = 147/360 (40%), Gaps = 80/360 (22%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L HM+Y QL+ KK + + RK ++ E I
Sbjct: 85 LQHMTYRAQLDMKKEQVVNLFH------RKGPFENTAIKETI------------------ 120
Query: 367 SPLVN--GYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASI 424
+VN YRNK + VG S + +GF +R+ + + C + +
Sbjct: 121 -GMVNPWRYRNKSQIPVGQSNSNQVIMGF----YRQRSHDIIDMDSCLIQDRQHQEVMNR 175
Query: 425 FQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQV 484
+ +L + ++ ++N +G R L VR G + E+M+I
Sbjct: 176 VKYWLNELNISIYNEKTKTGLIRHLVVRTG------------------YHTDEMMVIFVT 217
Query: 485 SSATFDDA--VVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLL 542
+ ATF + +VN +L K F P++ T++ + SNV + L
Sbjct: 218 NGATFKQSELLVN----KLKKEF--------PNI--TSIKQNINNSHSNVIMGRQSMTLY 263
Query: 543 SIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPD 602
+ +I D +S + + IS +F+Q+N+ EKLY ++A L
Sbjct: 264 G---------------KDKIEDQLSEVTYHISDLSFYQINSSQTEKLYQQALNYAQLTGK 308
Query: 603 TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
++ D CG GTIGL +A V G+E+ A+ DA NA N +KN F C KAEDV+
Sbjct: 309 EIVLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAKDNATKNQLKNTTFECGKAEDVI 368
>gi|116747738|ref|YP_844425.1| RNA methyltransferase [Syntrophobacter fumaroxidans MPOB]
gi|116696802|gb|ABK15990.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Syntrophobacter
fumaroxidans MPOB]
Length = 488
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 95/359 (26%), Positives = 145/359 (40%), Gaps = 83/359 (23%)
Query: 310 MSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPL 369
++Y QL+ K+ +A L+ L G K+E + S
Sbjct: 102 IAYEEQLKWKRVQVADSLEHLA-----------------------GAQGVKIEAAVPSDR 138
Query: 370 VNGYRNKCEFSVGYSLQAKP--------------TVGFMLGNFREGVTAVEEPVDCPNVS 415
+ YRNK EF+ P T+G + ++ + V VE DC S
Sbjct: 139 LIHYRNKMEFTFSDRRWLTPEEIDAAGMRDAYTFTLGLHVRSWFDKVFNVE---DCLLES 195
Query: 416 EIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNI 475
A + +++ + S +P + GFWR L +REG+ G+ L
Sbjct: 196 AEAVEIVKETRDWCRGSGVPAYGIKSQRGFWRFLVIREGKRTGQTL-------------- 241
Query: 476 SEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPA 535
L S +A VN+ L F +T +V + + VA
Sbjct: 242 ----LHLVTSDQPEHEAAVNTLTRHLVSRFPH----------ITTVVHSVSRKKAQVAFG 287
Query: 536 DAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGD 595
D R+++ P V+E R+ LRF IS +FFQ N +AEKLY
Sbjct: 288 DQS-RVVAGP----------GVIEERL----GGLRFRISAESFFQTNPFSAEKLYDEVSR 332
Query: 596 WADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
A ++D+ CGTG+I L++A RV V+G E+ A+ DA NA +NGI+N RF+
Sbjct: 333 LAAFQGTETVWDLYCGTGSIALSVAPRVARVVGFEVVDQAIEDACVNARLNGIENARFI 391
>gi|255102596|ref|ZP_05331573.1| putative RNA methyltransferase [Clostridium difficile QCD-63q42]
Length = 454
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 87/360 (24%), Positives = 145/360 (40%), Gaps = 75/360 (20%)
Query: 310 MSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLP-CKLEGILGSP 368
+ Y+ QLE K N + Q+L + IG L ++ +G
Sbjct: 87 LDYNKQLEMKTNEVKQVLSR------------------------IGKLEDVEVHDTIGMD 122
Query: 369 LVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEF 428
YRNK +F + + P +GF +++ V C EI K I + +
Sbjct: 123 NPYRYRNKAQFPIQKN-NGIPIIGF----YKKKTHDVISTEKCVIQHEINDKIVKIIKTY 177
Query: 429 LQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSAT 488
++ + +++ ++G R L + G + EVM++
Sbjct: 178 IRAYKVSIYDEKTHTGLIRHLVTKIGFTT------------------KEVMVVL------ 213
Query: 489 FDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKAD 548
V N K A+ + P LV+ +Q +N + + D
Sbjct: 214 ----VANGNKLPYLKELASVLKENIPGFK--TLVVNVNQKDTNAILGRENIVIY----GD 263
Query: 549 GEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDV 608
G +I+D I +L F ISP +FFQVN + + LY ++A+L +FD+
Sbjct: 264 G-----------KINDYIGDLVFEISPLSFFQVNPVQTKVLYDKALEYANLNDTDTVFDI 312
Query: 609 CCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
CG GTI L LA + V GIE+ A+ DA NA++N I N F KAE+++ + ++
Sbjct: 313 YCGIGTISLFLAQKAKKVYGIEIIDDAIKDAKINAKLNNIHNAEFYVGKAEEIVPKMYRE 372
>gi|421767549|ref|ZP_16204298.1| RNA methyltransferase, TrmA family [Lactococcus garvieae DCC43]
gi|407623967|gb|EKF50758.1| RNA methyltransferase, TrmA family [Lactococcus garvieae DCC43]
Length = 450
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 66/111 (59%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I DS+ F IS AF+QVNT AEKLY L D+ADL + ++ D G GTIGL +A
Sbjct: 264 ITDSMLGKDFQISARAFYQVNTAQAEKLYQLAYDFADLKAEDVVIDAYSGIGTIGLGMAD 323
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
+V V G+E+ AV +A NA +NGI+N + AE+VM +D + P
Sbjct: 324 KVAQVYGMEIIPEAVENAKVNAALNGIQNAHYEVGPAEEVMPKWSQDNIQP 374
>gi|257084323|ref|ZP_05578684.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis
Fly1]
gi|256992353|gb|EEU79655.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis
Fly1]
Length = 456
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 100/389 (25%), Positives = 158/389 (40%), Gaps = 87/389 (22%)
Query: 298 KSARDVVTP------------LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLP 345
K+A+D V P L H++Y QL+ KK+ + Q L K + A L
Sbjct: 66 KAAKDRVVPPCPVYETCGGCQLQHLAYKAQLDFKKDLLKQALNKF----KPANYQNYEL- 120
Query: 346 EWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAV 405
+ IG + +P YRNK +F + + + G + + V
Sbjct: 121 -----RKTIG---------MENPW--NYRNKAQFQLR-QIDGQVEAGLYQADSHQLV--- 160
Query: 406 EEPVD-CPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVE 464
P+D C K + + L LP+++ KNSG +R L VR G G
Sbjct: 161 --PIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTLMVRVGIQTG------ 212
Query: 465 NLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQ 524
EV ++ S F + E++ +A + LP ++Q
Sbjct: 213 ------------EVQVVFITQSQKF------PQKEKMVRAI-------NEQLPEVVSIMQ 247
Query: 525 DHQGV-SNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNT 583
+ Q +++ D L L +ES I + I+++ F +SP AFFQ+N
Sbjct: 248 NVQNKKTSLVMGDDTLHLWG--------KES-------IEEHINDVVFDLSPRAFFQLNP 292
Query: 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNA 643
E LY+ G DL P + D CG GTIGL+LA + V G++ +A+ DA NA
Sbjct: 293 EQTEVLYNEGIKALDLQPSETVVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNA 352
Query: 644 EINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
+ G+ N + AED++ K+ P
Sbjct: 353 KRLGVMNTHYAVGTAEDLLPKWFKEGFKP 381
>gi|168215741|ref|ZP_02641366.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens NCTC 8239]
gi|182382137|gb|EDT79616.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens NCTC 8239]
Length = 451
Score = 93.2 bits (230), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 84/309 (27%), Positives = 138/309 (44%), Gaps = 57/309 (18%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQA-KPTVGFMLGNFREGVTAVEEPV----DCPNVSEI 417
GI SP+ YRNK E++ G + + T+G + G+ V++ V D N+ +
Sbjct: 114 GIETSPIQWEYRNKMEYTFGDEEKGGELTLGMHMKGKSFGIVNVDKCVLVDEDFRNILDT 173
Query: 418 ACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISE 477
KY ++ LP + +G+ R L VR K + E + VN+
Sbjct: 174 TVKY-------FREKGLPFYKIMPRTGYLRYLVVR------KSVKTEEILVNL------- 213
Query: 478 VMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADA 537
V++ D + +EF L K L +++ + +S
Sbjct: 214 ------VTTTQIDFDL--TEFTELIKGLNLKG-------KLKSIIHTESDALSEAVI--- 255
Query: 538 PLRLLSIPKADGEPEESNDVV-EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDW 596
PE+ N + + I +++ L F ISP +FFQ N+L AEKLYS+ D+
Sbjct: 256 -------------PEKVNILYGDDFITENLLGLNFKISPFSFFQTNSLGAEKLYSIVRDF 302
Query: 597 ADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCA 656
+ ++FD+ CGTGTIG A + VIGIE+ A A+ NA++NG+ NC F+
Sbjct: 303 MGAADNKVVFDLYCGTGTIGQIAAGKASKVIGIELIEEAAMAANENAKLNGLNNCNFIAG 362
Query: 657 KAEDVMGSL 665
+V+ ++
Sbjct: 363 DVAEVIKTV 371
>gi|300861732|ref|ZP_07107812.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TUSoD Ef11]
gi|428766255|ref|YP_007152366.1| RNA methyltransferase, TrmA family [Enterococcus faecalis str.
Symbioflor 1]
gi|300848257|gb|EFK76014.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TUSoD Ef11]
gi|427184428|emb|CCO71652.1| RNA methyltransferase, TrmA family [Enterococcus faecalis str.
Symbioflor 1]
Length = 457
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 100/417 (23%), Positives = 165/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGND-EGLAGDGSGLKVKS---ARDVVTPLAHMSYSVQL 316
E+A+PGE E G G G L + VK + ++PL H++Y QL
Sbjct: 37 ENALPGEKLEIKVLKTGKSFGYGKVLTVLKSSEQRVPVKDENFTKVGISPLQHLAYGAQL 96
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
K + +++++ + LPE + LP +G YRNK
Sbjct: 97 SFKTQQVENVMQRVAK-----------LPE-------VPVLPT-----IGMNDPWHYRNK 133
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPV 436
+ V + + GF N + + + P + K I +++ +
Sbjct: 134 AQIPVR-KIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKY----SVKP 188
Query: 437 WNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNS 496
+N NSG R + VR G G+ + V+LI + +V
Sbjct: 189 YNESDNSGNLRHIVVRRGYHTGEMM----------------VVLITRTPKLFPISKIVPD 232
Query: 497 EFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLLSIPKADGEPEESN 555
E ++P ++Q+ + +NV D + L
Sbjct: 233 ILE---------------AIPEVVSIVQNVNPKRTNVIFGDETILLHG------------ 265
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
+I D+I +L+F IS +F+QVN E +Y ++A L + ++ D CG GTI
Sbjct: 266 ---SEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTI 322
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL LA V GIE+ AV DA NA++N I+N F AE+++ L+++ L P
Sbjct: 323 GLNLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEELLPKLVENGLQP 379
>gi|110801335|ref|YP_696793.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens ATCC 13124]
gi|168208816|ref|ZP_02634441.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens B str.
ATCC 3626]
gi|182624048|ref|ZP_02951836.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens D str. JGS1721]
gi|422346780|ref|ZP_16427694.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens WAL-14572]
gi|110675982|gb|ABG84969.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens ATCC 13124]
gi|170713002|gb|EDT25184.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens B str.
ATCC 3626]
gi|177910941|gb|EDT73295.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens D str. JGS1721]
gi|373226325|gb|EHP48652.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens WAL-14572]
Length = 451
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 84/309 (27%), Positives = 136/309 (44%), Gaps = 57/309 (18%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQA-KPTVGFMLGNFREGVTAVEEPV----DCPNVSEI 417
GI SP+ YRNK E++ G + + T+G + G+ V++ V D N+ +
Sbjct: 114 GIETSPIQWEYRNKMEYTFGDEEKGGELTLGMHMKGKSFGIVNVDKCVLVDEDFRNILDT 173
Query: 418 ACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISE 477
KY ++ LP + +G+ R L VR K + E + VN+
Sbjct: 174 TVKY-------FREKGLPFYKIMPRTGYLRYLVVR------KSVKTEEILVNL------- 213
Query: 478 VMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADA 537
+ FD +EF L K L +++ + +S
Sbjct: 214 ----VTTTQIDFD----LTEFTELIKGLNLKG-------KLKSIIHTESDALSEAVI--- 255
Query: 538 PLRLLSIPKADGEPEESNDVV-EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDW 596
PE+ N + + I +++ L F ISP +FFQ N+L AEKLYS+ D+
Sbjct: 256 -------------PEKVNILYGDDFITENLLGLNFKISPFSFFQTNSLGAEKLYSIVRDF 302
Query: 597 ADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCA 656
+ ++FD+ CGTGTIG A + VIGIE+ A A+ NA++NG+ NC F+
Sbjct: 303 MGAADNKVVFDLYCGTGTIGQIAAGKASKVIGIELIEEAAMAANENAKLNGLNNCNFIAG 362
Query: 657 KAEDVMGSL 665
+V+ ++
Sbjct: 363 DVAEVIKTV 371
>gi|18311096|ref|NP_563030.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens str. 13]
gi|168212849|ref|ZP_02638474.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens CPE str.
F4969]
gi|50401771|sp|Q8XIK5.1|Y2114_CLOPE RecName: Full=Uncharacterized RNA methyltransferase CPE2114
gi|18145779|dbj|BAB81820.1| RNA methyltransferase-like protein [Clostridium perfringens str.
13]
gi|170715477|gb|EDT27659.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens CPE str.
F4969]
Length = 451
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 84/309 (27%), Positives = 138/309 (44%), Gaps = 57/309 (18%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQA-KPTVGFMLGNFREGVTAVEEPV----DCPNVSEI 417
GI SP+ YRNK E++ G + + T+G + G+ V++ V D N+ +
Sbjct: 114 GIETSPIQWEYRNKMEYTFGDEEKGGELTLGMHMKGKSFGIVNVDKCVLVDEDFRNILDT 173
Query: 418 ACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISE 477
KY ++ LP + +G+ R L VR K + E + VN+
Sbjct: 174 TVKY-------FREKGLPFYKIMPRTGYLRYLVVR------KSVKTEEILVNL------- 213
Query: 478 VMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADA 537
V++ D + +EF L K L +++ + +S
Sbjct: 214 ------VTTTQIDFDL--TEFTELIKGLNLKG-------KLKSIIHTESDALSEAVI--- 255
Query: 538 PLRLLSIPKADGEPEESNDVV-EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDW 596
PE+ N + + I +++ L F ISP +FFQ N+L AEKLYS+ D+
Sbjct: 256 -------------PEKVNILYGDDFITENLLGLNFKISPFSFFQTNSLGAEKLYSIVRDF 302
Query: 597 ADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCA 656
+ ++FD+ CGTGTIG A + VIGIE+ A A+ NA++NG+ NC F+
Sbjct: 303 MGAADNKVVFDLYCGTGTIGQIAAGKASKVIGIELIEEAAMAANENAKLNGLNNCNFIAG 362
Query: 657 KAEDVMGSL 665
+V+ ++
Sbjct: 363 DVAEVIKTV 371
>gi|422696485|ref|ZP_16754443.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1346]
gi|315174955|gb|EFU18972.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1346]
Length = 456
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 99/389 (25%), Positives = 159/389 (40%), Gaps = 87/389 (22%)
Query: 298 KSARDVVTP------------LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLP 345
K+A+D V P L H++Y QL+ KK+ + Q L K + A L
Sbjct: 66 KAAKDRVVPPCPVYETCGGCQLQHLAYKAQLDFKKDLLKQALNKF----KPANYQNYEL- 120
Query: 346 EWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAV 405
+ IG + +P YRNK +F + + + G + + V
Sbjct: 121 -----RKTIG---------MENPW--NYRNKAQFQLR-QIDGQVEAGLYQADSHQLV--- 160
Query: 406 EEPVD-CPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVE 464
P+D C K + + L + LP+++ KNSG +R L VR G G
Sbjct: 161 --PIDNCLVQQPATTKVMNTLVDLLNKFQLPIYDERKNSGIFRTLMVRVGIQTG------ 212
Query: 465 NLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQ 524
EV ++ S F + E++ + + LP ++Q
Sbjct: 213 ------------EVQVVFITQSQKF------PQKEKMVRVI-------NEQLPEVVSIMQ 247
Query: 525 DHQGV-SNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNT 583
+ Q +++ D L L +ES I + I+++ F +SP AFFQ+N
Sbjct: 248 NVQNKKTSLVMGDDTLHLWG--------KES-------IEEHINDVVFDLSPRAFFQLNP 292
Query: 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNA 643
E LY+ G DL P+ + D CG GTIGL+LA + V G++ +A+ DA NA
Sbjct: 293 EQTEVLYNEGIKALDLQPNETVVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNA 352
Query: 644 EINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
+ G+ N + AED++ K+ P
Sbjct: 353 KRLGVTNTHYAVGTAEDLLPKWFKEGFKP 381
>gi|420193342|ref|ZP_14699195.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM023]
gi|394259987|gb|EJE04810.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM023]
Length = 456
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 90/360 (25%), Positives = 147/360 (40%), Gaps = 80/360 (22%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L HM+Y QL+ K+ + + RK ++ E I
Sbjct: 85 LQHMTYRAQLDMKREQVVNLFH------RKGPFENTAIKETI------------------ 120
Query: 367 SPLVN--GYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASI 424
+VN YRNK + VG S + +GF +R+ + + C + +
Sbjct: 121 -GMVNPWRYRNKSQIPVGQSNSNQVIMGF----YRQRSHDIIDMDSCLIQDRQHQEVMNR 175
Query: 425 FQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQV 484
+ L + ++ ++N +G R L VR G + E+M+I
Sbjct: 176 VKYLLNELNISIYNEKTKTGLIRHLVVRTG------------------YHTDEMMVIFVT 217
Query: 485 SSATFDDA--VVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLL 542
+ ATF + +VN +L K F P+ +T++ + SNV + L
Sbjct: 218 NGATFKQSELLVN----KLKKEF--------PN--ITSIKQNINNSHSNVIMGRQSMTLY 263
Query: 543 SIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPD 602
+ +I D +S + + IS +F+Q+N+ EKLY ++A L
Sbjct: 264 G---------------KDKIEDQLSEVIYHISDLSFYQINSSQTEKLYQQALNYAQLTGK 308
Query: 603 TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
++ D CG GTIGL +A + V G+E+ A+ DA NA N +KN F C KAEDV+
Sbjct: 309 EIVLDTYCGIGTIGLYMAPQAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFECGKAEDVI 368
>gi|417090805|ref|ZP_11956128.1| hypothetical protein SSUR61_0923 [Streptococcus suis R61]
gi|353533423|gb|EHC03078.1| hypothetical protein SSUR61_0923 [Streptococcus suis R61]
Length = 451
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 91/378 (24%), Positives = 147/378 (38%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L + R + L H++Y QL KK + L+K+ + A + + +
Sbjct: 71 LDLTYLRTGIADLGHLTYPAQLAFKKKQVENSLRKIAGISEIAVADTLGM---------- 120
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
+PL YRNK V + + GF N + V + + +
Sbjct: 121 -----------DNPL--AYRNKAAVPVR-RVNGQLETGFFRKNSHDLVPIEDFYIQHKEI 166
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+ ++ L++ DL ++ + +G R + VR G G+ +
Sbjct: 167 DALVLAT----RDLLRKLDLKPYDEKEQTGLVRNIVVRRGHYSGQLM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++ F V + ERL F P ++Q+ + A
Sbjct: 210 ----LVLVTTRPKIFR---VETLIERLTSQF-----------PNLVSIVQNINDQNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
RLL + I D++ F IS +F+QVNT AEKLY
Sbjct: 252 FGQEFRLLHGSET--------------IVDTMLGNEFEISAPSFYQVNTEMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D+A+L D ++ D G GTIGL+ A +V V G+E+ AV D+ +NA NGI N +V
Sbjct: 298 DFAELSADDIVIDAYSGIGTIGLSFAKQVKHVYGVEVVEKAVLDSQKNAARNGIDNATYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
C AE M + D + P
Sbjct: 358 CDSAESAMKKWVADGIKP 375
>gi|126701016|ref|YP_001089913.1| 23S rRNA (uracil-5-)-methyltransferase RumA (23S
rRNA(M-5-U1939)-methyltransferase) [Clostridium
difficile 630]
gi|115252453|emb|CAJ70296.1| 23S rRNA (uracil-5-)-methyltransferase RumA (23S
rRNA(M-5-U1939)-methyltransferase) [Clostridium
difficile 630]
Length = 454
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 85/360 (23%), Positives = 144/360 (40%), Gaps = 75/360 (20%)
Query: 310 MSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLP-CKLEGILGSP 368
+ Y+ QLE K N + Q+L + IG L ++ +G
Sbjct: 87 LDYNKQLEMKTNEVKQVLSR------------------------IGKLEDVEVHDTIGMD 122
Query: 369 LVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEF 428
YRNK +F + + P +GF +++ V C EI K I + +
Sbjct: 123 NPYRYRNKAQFPIQKN-NGIPIIGF----YKKKTHDVISTEKCVIQHEINDKIVKIIKTY 177
Query: 429 LQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSAT 488
++ + +++ ++G R L + G + EVM++
Sbjct: 178 IRAYKVSIYDEKTHTGLIRHLVTKIGFTT------------------KEVMVVL------ 213
Query: 489 FDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKAD 548
V N K A+ + P LV+ +Q +N + +
Sbjct: 214 ----VANGNKLPYLKELASVLKENIPGFK--TLVVNVNQKDTNAILGRENIVIYG----- 262
Query: 549 GEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDV 608
+ +I+D I +L F ISP +FFQVN + + LY ++A+L +FD+
Sbjct: 263 ----------DGKINDYIGDLVFEISPLSFFQVNPVQTKVLYDKALEYANLNDTDTVFDI 312
Query: 609 CCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
CG GTI L LA + V GIE+ A+ DA NA++N I N F KAE+++ + ++
Sbjct: 313 YCGIGTISLFLAQKAKKVYGIEIIDDAIKDAKINAKLNNIHNAEFYVGKAEEIVPKMYRE 372
>gi|402311328|ref|ZP_10830276.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium sp. AS15]
gi|400365474|gb|EJP18526.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium sp. AS15]
Length = 450
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 135/306 (44%), Gaps = 54/306 (17%)
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQ-AKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYA 422
I+ SPL Y+NK EF+ G ++ +G N + VE DC V E Y
Sbjct: 115 IVPSPLQKEYKNKMEFTFGNEVKDGDLIIGLHKKNSPMSIVPVE---DCLLVDE---DYR 168
Query: 423 SIFQ---EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVM 479
+I + E+ + +LP ++ + G+ R L +R+G + ++ +
Sbjct: 169 TILKMTGEYFRAKNLPHYHIKSHEGYPRHLVIRKGEN-------------------TKQL 209
Query: 480 LIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL 539
LI V+++ D + SE+ + +A +T + ++ + +S+ D
Sbjct: 210 LINIVTTSQIDFDL--SEYVQKLQALKLEST-------IVGILHTTNDSLSDTVKDDKVD 260
Query: 540 RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
L + +D + +F ISP +FFQ NT AE LY + D
Sbjct: 261 LLFG---------------DNYFYDILLGNKFKISPFSFFQTNTKGAETLYKTAMEMID- 304
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659
G ++FD+ GTGTIG++L+ R VIGIE+ AV A NAE N +KN F+ +
Sbjct: 305 GEKDIIFDLYSGTGTIGISLSSRAKKVIGIEIVEEAVEMARENAEANKVKNVEFIAGDVK 364
Query: 660 DVMGSL 665
+ + L
Sbjct: 365 EEVSKL 370
>gi|387783742|ref|YP_006069825.1| tRNA methyltransferase, TrmA family [Streptococcus salivarius
JIM8777]
gi|338744624|emb|CCB94990.1| tRNA methyltransferase, TrmA family [Streptococcus salivarius
JIM8777]
Length = 453
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 98/417 (23%), Positives = 163/417 (39%), Gaps = 79/417 (18%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLA----GDGSGLKVKSARDVVTPLAHMSYSVQL 316
++A+PGE+ + G G E + R + HM+Y QL
Sbjct: 33 DNALPGEVIKMRVLKLKKNIGFGKVEDYVTLSPNRNQDIDATYLRSGIADFGHMTYEEQL 92
Query: 317 EHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNK 376
+ K+ + L K G+S ++ LG YRNK
Sbjct: 93 KFKRKQVVDNLYKTA---------GIS--------------DVEVAETLGMETPYAYRNK 129
Query: 377 CEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIF-QEFLQQSDLP 435
+ V ++ + GF N + + P++ + + +F ++ L++ DL
Sbjct: 130 AQVPVR-RVKGQLETGFYRKNSHDLI-----PIEDFLIQDKEIDKLIVFVRDLLRRYDLK 183
Query: 436 VWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVN 495
++ + +G R L VR G G+ M++ V++
Sbjct: 184 PYDEKEQTGLIRHLVVRRGHYSGQ-------------------MMLVFVTT--------R 216
Query: 496 SEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESN 555
+ R+ + A + + P +IQ+ + A R L G+
Sbjct: 217 PKIFRIDQIIAK----ITEAFPNVVSIIQNINDKNTNAIFGKEFRTLY-----GQDT--- 264
Query: 556 DVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTI 615
I D + + IS +F+QVNT AEKLY D++D D+++ D G GTI
Sbjct: 265 ------ITDRMLGNDYEISAQSFYQVNTEMAEKLYQTAIDFSDPNSDSIVIDAYSGIGTI 318
Query: 616 GLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
GL+ A +V V G+E+ +AV DA +NAE NGI N +V AE+ M KD + P
Sbjct: 319 GLSFAKQVEEVYGVEVIETAVEDAKKNAERNGITNAHYVADSAENAMAKWSKDGIKP 375
>gi|422875029|ref|ZP_16921514.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens F262]
gi|380304024|gb|EIA16317.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens F262]
Length = 451
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 84/309 (27%), Positives = 136/309 (44%), Gaps = 57/309 (18%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQA-KPTVGFMLGNFREGVTAVEEPV----DCPNVSEI 417
GI SP+ YRNK E++ G + + T+G + G+ V++ V D N+ +
Sbjct: 114 GIETSPIQWEYRNKMEYTFGDEEKGGELTLGMHMKGKSFGIVNVDKCVLVDEDFRNILDT 173
Query: 418 ACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISE 477
KY ++ LP + +G+ R L VR K + E + VN+
Sbjct: 174 TVKY-------FREKGLPFYKIMPRTGYLRYLVVR------KSVKTEEILVNL------- 213
Query: 478 VMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADA 537
+ FD +EF L K L +++ + +S
Sbjct: 214 ----VTTTQIDFD----LTEFTELIKGLNLKG-------KLKSIIHTESDALSEAVI--- 255
Query: 538 PLRLLSIPKADGEPEESNDVV-EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDW 596
PE+ N + + I +++ L F ISP +FFQ N+L AEKLYS+ D+
Sbjct: 256 -------------PEKVNILYGDDFITENLLGLNFKISPFSFFQTNSLGAEKLYSIVRDF 302
Query: 597 ADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCA 656
+ ++FD+ CGTGTIG A + VIGIE+ A A+ NA++NG+ NC F+
Sbjct: 303 MGAADNKVVFDLYCGTGTIGQIAAGKASKVIGIELIEEAAMAANENAKLNGLNNCNFIAG 362
Query: 657 KAEDVMGSL 665
+V+ ++
Sbjct: 363 DVAEVIKTV 371
>gi|421289654|ref|ZP_15740405.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA54354]
gi|421304972|ref|ZP_15755628.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA62331]
gi|395888895|gb|EJG99905.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA54354]
gi|395905634|gb|EJH16539.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA62331]
Length = 543
Score = 92.8 bits (229), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 67/111 (60%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I D + F I+ AF+QVNT AEKLY D+A+L D ++ D G GTIGL++A
Sbjct: 265 ITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVIIDAYSGIGTIGLSVAK 324
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
V V G+E+ AV ++ +NA++N I N +VC AE+ M + LKD + P
Sbjct: 325 HVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKDGIQP 375
>gi|110802049|ref|YP_699391.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens SM101]
gi|110682550|gb|ABG85920.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens SM101]
Length = 452
Score = 92.8 bits (229), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 84/309 (27%), Positives = 136/309 (44%), Gaps = 57/309 (18%)
Query: 363 GILGSPLVNGYRNKCEFSVGYSLQA-KPTVGFMLGNFREGVTAVEEPV----DCPNVSEI 417
GI SP+ YRNK E++ G + + T+G + G+ V++ V D N+ +
Sbjct: 114 GIETSPIQWEYRNKMEYTFGDEEKGGELTLGMHMKGKSFGIVNVDKCVLVDEDFRNILDT 173
Query: 418 ACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISE 477
KY ++ LP + +G+ R L VR K + E + VN+
Sbjct: 174 TVKY-------FREKGLPFYKIMPRTGYLRYLVVR------KSVKTEEILVNL------- 213
Query: 478 VMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADA 537
+ FD +EF L K L +++ + +S
Sbjct: 214 ----VTTTQIDFD----LTEFTELIKGLNLKG-------KLKSIIHTESDALSEAVI--- 255
Query: 538 PLRLLSIPKADGEPEESNDVV-EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDW 596
PE+ N + + I +++ L F ISP +FFQ N+L AEKLYS+ D+
Sbjct: 256 -------------PEKVNILYGDDFITENLLGLNFKISPFSFFQTNSLGAEKLYSIVRDF 302
Query: 597 ADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCA 656
+ ++FD+ CGTGTIG A + VIGIE+ A A+ NA++NG+ NC F+
Sbjct: 303 MGAADNKVVFDLYCGTGTIGQIAAGKASKVIGIELIEEAAMAANENAKLNGLNNCNFIAG 362
Query: 657 KAEDVMGSL 665
+V+ ++
Sbjct: 363 DVAEVIKTV 371
>gi|157691441|ref|YP_001485903.1| TrmA family RNA methyltransferase [Bacillus pumilus SAFR-032]
gi|157680199|gb|ABV61343.1| TrmA family RNA methyltransferase [Bacillus pumilus SAFR-032]
Length = 465
Score = 92.8 bits (229), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 86/363 (23%), Positives = 147/363 (40%), Gaps = 73/363 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
+ HMSY QL K+ + +L+++ + + SR K+ +LG
Sbjct: 89 IQHMSYEGQLLFKQKQVKDVLERIGK---------------LDMSR------VKVHPVLG 127
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
YRNK + VG + G + G +++ + + C + +
Sbjct: 128 MEDPWNYRNKAQVPVG-----EREGGLVAGFYQQRTHEIIDMEKCLIQQSENDEVVQAVK 182
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
E Q + +N ++ G+ R + VR G + G E+M++ +
Sbjct: 183 EICQAFGIKAYNEERHKGWLRHVMVRYGIATG------------------EMMVVFVTRT 224
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQD-HQGVSNVAPADAPLRLLSIP 545
A F E++ F P ++Q+ + +NV D L
Sbjct: 225 AEFPQK--QQVIEQIIARF-----------PHIRSIVQNVNSKKTNVIFGDETTVLWG-- 269
Query: 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLL 605
E I+D+I +++F IS +F+QVN + LY ++A+L + +
Sbjct: 270 -------------EEYIYDTIGDIKFAISARSFYQVNPAQTKMLYDKALEYAELQGEETV 316
Query: 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665
D CG GTI L LA + G V G+E+ A+ DA RNA +NGI N F +AE V+ +
Sbjct: 317 IDAYCGIGTISLFLAQKAGRVYGVEIVPEAIEDAKRNAALNGINNVEFAVGEAETVIPNW 376
Query: 666 LKD 668
K+
Sbjct: 377 YKE 379
>gi|15902976|ref|NP_358526.1| hypothetical protein spr0932 [Streptococcus pneumoniae R6]
gi|116515807|ref|YP_816392.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae D39]
gi|149019625|ref|ZP_01834944.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP23-BS72]
gi|168483100|ref|ZP_02708052.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae CDC1873-00]
gi|418175846|ref|ZP_12812443.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA41437]
gi|418238600|ref|ZP_12865155.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae NorthCarolina6A-23]
gi|419475421|ref|ZP_14015261.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA14688]
gi|419525776|ref|ZP_14065339.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA14373]
gi|421208849|ref|ZP_15665870.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2070005]
gi|421224898|ref|ZP_15681641.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2070768]
gi|421240585|ref|ZP_15697131.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2080913]
gi|50401573|sp|Q8DPY7.1|Y932_STRR6 RecName: Full=Uncharacterized RNA methyltransferase spr0932
gi|15458541|gb|AAK99736.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
gi|116076383|gb|ABJ54103.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae D39]
gi|147931000|gb|EDK81980.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP23-BS72]
gi|172043444|gb|EDT51490.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae CDC1873-00]
gi|353842414|gb|EHE22461.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA41437]
gi|353894350|gb|EHE74092.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae NorthCarolina6A-23]
gi|379558469|gb|EHZ23503.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA14373]
gi|379560966|gb|EHZ25987.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA14688]
gi|395575187|gb|EJG35757.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2070005]
gi|395590376|gb|EJG50683.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2070768]
gi|395608376|gb|EJG68470.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2080913]
Length = 543
Score = 92.8 bits (229), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 67/111 (60%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I D + F I+ AF+QVNT AEKLY D+A+L D ++ D G GTIGL++A
Sbjct: 265 ITDQMLGNDFQIAGLAFYQVNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGLSVAK 324
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
V V G+E+ AV ++ +NA++N I N +VC AE+ M + LKD + P
Sbjct: 325 HVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKDGIQP 375
>gi|317154458|ref|YP_004122506.1| TrmA family RNA methyltransferase [Desulfovibrio aespoeensis
Aspo-2]
gi|316944709|gb|ADU63760.1| RNA methyltransferase, TrmA family [Desulfovibrio aespoeensis
Aspo-2]
Length = 465
Score = 92.8 bits (229), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 96/360 (26%), Positives = 141/360 (39%), Gaps = 76/360 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLP-CKLEGIL 365
L H++Y QL K AQ+ LTR IGG+ ++
Sbjct: 84 LQHLAYPEQLAQKN---AQVAAALTR---------------------IGGVQDLVMDAPA 119
Query: 366 GSPLVNGYRNKCEFSV-----GYSLQAK-PTVGFMLGNFREGVTAVEEPVDCPNVSEIAC 419
GSP + GYRNK EF+ G L + PT G+ R G V + C +
Sbjct: 120 GSPDIWGYRNKMEFAFEQREDGLHLGLREPTPE---GSNRPG--PVLDIDQCHLCAAWDV 174
Query: 420 KYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVM 479
+ ++F + +P +N SGFWR L +R + EVM
Sbjct: 175 EIMVAVRQFCAATGVPAYNPATESGFWRHLVIRHAAA-------------------GEVM 215
Query: 480 LIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL 539
+ + D ++ E + F L + V + VA + +
Sbjct: 216 VHLITARDERKDNLIKDMAELFLQRFP----------ELASFVHSTRVKRTTVAFGEKIV 265
Query: 540 RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
L N VE R+ +R+ +SP AFFQ NT A +L+ ++ L
Sbjct: 266 YSLG-----------NAFVEERLARGEREVRYRLSPNAFFQTNTGGASELFGTVAEFCAL 314
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659
+L D+ CGTG IG+ LA G VIG E + AV+ A +A +NG+ NC FV E
Sbjct: 315 SDTHVLLDLYCGTGAIGIYLAGEAGRVIGYEQSEEAVTKARESARLNGLTNCSFVSGSLE 374
>gi|149012968|ref|ZP_01833857.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP19-BS75]
gi|169832868|ref|YP_001694472.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae Hungary19A-6]
gi|303255584|ref|ZP_07341635.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae BS455]
gi|303260473|ref|ZP_07346441.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP-BS293]
gi|303262830|ref|ZP_07348767.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP14-BS292]
gi|303265300|ref|ZP_07351210.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae BS397]
gi|303266507|ref|ZP_07352394.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae BS457]
gi|303268374|ref|ZP_07354170.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae BS458]
gi|387759273|ref|YP_006066251.1| putative RNA methyltransferase [Streptococcus pneumoniae INV200]
gi|410476563|ref|YP_006743322.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae gamPNI0373]
gi|418139380|ref|ZP_12776210.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA13338]
gi|418180201|ref|ZP_12816773.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA41688]
gi|419514583|ref|ZP_14054210.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae England14-9]
gi|421295979|ref|ZP_15746691.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA58581]
gi|147763121|gb|EDK70062.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP19-BS75]
gi|168995370|gb|ACA35982.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae Hungary19A-6]
gi|301801862|emb|CBW34580.1| putative RNA methyltransferase [Streptococcus pneumoniae INV200]
gi|302597440|gb|EFL64535.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae BS455]
gi|302636028|gb|EFL66526.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP14-BS292]
gi|302638385|gb|EFL68852.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP-BS293]
gi|302642095|gb|EFL72446.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae BS458]
gi|302643958|gb|EFL74218.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae BS457]
gi|302645165|gb|EFL75402.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae BS397]
gi|353846167|gb|EHE26202.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA41688]
gi|353905623|gb|EHE81046.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA13338]
gi|379637679|gb|EIA02232.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae England14-9]
gi|395897192|gb|EJH08156.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA58581]
gi|406369508|gb|AFS43198.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae gamPNI0373]
Length = 543
Score = 92.8 bits (229), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 95/378 (25%), Positives = 150/378 (39%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L + R + L H+SY QL+ K + L K+
Sbjct: 71 LDLAYLRSGIADLGHLSYPEQLKFKTKQVKDSLYKIA----------------------- 107
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
G ++ LG YRNK + V + GF N + + + P +
Sbjct: 108 GIADVEVAETLGMEHPVKYRNKAQVPVR-RVNGVLETGFFRKNSHNLMPLEDFFIQDPVI 166
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
++ ++ L++ DL ++ + SG R L VR G G+ +
Sbjct: 167 DQVVVA----LRDLLRRFDLKPYDEKEQSGLIRNLVVRRGHYSGQIM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
V+L+A D ++ E++ K F P V+Q+ + A
Sbjct: 210 ---VVLVATRPKVFRVDQLI----EQVIKQF-----------PEIVSVMQNINDQNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
R L G+ I D + F I+ AF+QVNT AEKLY
Sbjct: 252 FGKEWRTLY-----GQD---------YITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D+A+L D ++ D G GTIGL++A V V G+E+ AV ++ +NA++N I N +V
Sbjct: 298 DFAELKKDDVVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
C AE+ M + LKD + P
Sbjct: 358 CDTAENAMKNWLKDGIQP 375
>gi|417939845|ref|ZP_12583133.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
SK313]
gi|343388726|gb|EGV01311.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
SK313]
Length = 453
Score = 92.8 bits (229), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 94/378 (24%), Positives = 150/378 (39%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L + R + L H++Y QL+ K + L K+
Sbjct: 71 LDLAYLRSGIADLGHLAYPEQLKFKTKQVKDSLYKIA----------------------- 107
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
G + ++ LG YRNK + V + GF N + + + + P +
Sbjct: 108 GIVDVEVAETLGMENPVKYRNKAQVPVR-RVNGILETGFFRKNSHDLMPLKDFFIQDPVI 166
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
E+ ++ L++ DL ++ + SG R L VR G G+ +
Sbjct: 167 DEVVVA----LRDLLRRYDLKPYDEKEQSGLIRNLVVRRGHYSGQIM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++A F V+ E+L K F P V+Q+ + A
Sbjct: 210 ----VILATTRPKVFR---VDQLIEQLIKQF-----------PEIVSVMQNINDQNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
+ L G+ I D + F I+ AF+QVNT AEKLY
Sbjct: 252 FGKEWKTLY-----GQD---------YITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D+A+L D ++ D G GTIGL++A V V G+E+ AV ++ +NA INGI N +V
Sbjct: 298 DFAELREDDVVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKNASINGITNAHYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
C E+ M + LK+ + P
Sbjct: 358 CDTTENAMKNWLKEGIKP 375
>gi|386583827|ref|YP_006080230.1| tRNA (uracil-5-)-methyltransferase-like SAM-dependent
methyltransferase [Streptococcus suis D9]
gi|386583838|ref|YP_006080241.1| tRNA (uracil-5-)-methyltransferase-like SAM-dependent
methyltransferase [Streptococcus suis D9]
gi|353735973|gb|AER16982.1| tRNA (uracil-5-)-methyltransferase-like SAM-dependent
methyltransferase [Streptococcus suis D9]
gi|353735984|gb|AER16993.1| tRNA (uracil-5-)-methyltransferase-like SAM-dependent
methyltransferase [Streptococcus suis D9]
Length = 452
Score = 92.8 bits (229), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 90/378 (23%), Positives = 147/378 (38%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L + R + L H++Y QL KK + L+K+ + A + + +
Sbjct: 71 LDLTYLRTGIADLGHLTYPAQLAFKKKQVENSLRKIAGISEIAVADTLGM---------- 120
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
+PL YRNK V + + GF N + V + + +
Sbjct: 121 -----------DNPL--AYRNKAAVPVR-RVNGQLETGFFRKNSHDLVPIEDFYIQHKEI 166
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
+ ++ L++ DL ++ + +G R + VR G G+ +
Sbjct: 167 DALVLAT----RDLLRKLDLKPYDEKEQTGLVRNIVVRRGHYSGQLM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
+++ F V + ERL F P ++Q+ + A
Sbjct: 210 ----LVLVTTRPKIFR---VETLIERLTSQF-----------PNLVSIVQNINDQNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
RLL + I D++ F IS +F+QVNT AEKLY
Sbjct: 252 FGQEFRLLHGSET--------------ITDTMLGNEFEISAPSFYQVNTEMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D+A+L D ++ D G GT+GL+ A +V V G+E+ AV D+ +NA NGI N +V
Sbjct: 298 DFAELSADDVVIDAYSGIGTVGLSFAKQVKHVYGVEVVEKAVLDSQKNAARNGIDNVTYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
C AE M + D + P
Sbjct: 358 CDSAESTMQKWVADGVKP 375
>gi|451927457|gb|AGF85335.1| methyltransferase [Moumouvirus goulette]
Length = 379
Score = 92.8 bits (229), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 73/114 (64%), Gaps = 4/114 (3%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLY----SLGGDWADLGPDTLLFDVCCGTGTIGL 617
I++ + + F IS +FFQVNT A E LY L + + + +LFD+CCGTGTIG
Sbjct: 184 IYEKLDDFVFKISHESFFQVNTYATELLYGTIKQLVIKYFNKCDNNILFDLCCGTGTIGT 243
Query: 618 TLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLN 671
+A+ +IGI++ +S+++DA N +INGI N +F+CA E V+ +++ + +N
Sbjct: 244 YVANIFTEIIGIDIKSSSINDATVNQKINGIMNAKFICAPIEQVLDNIINNMIN 297
>gi|383480180|ref|YP_005389074.1| RNA methyltransferase protein TrmA [Streptococcus pyogenes
MGAS15252]
gi|378928170|gb|AFC66376.1| RNA methyltransferase protein TrmA [Streptococcus pyogenes
MGAS15252]
Length = 451
Score = 92.8 bits (229), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 91/373 (24%), Positives = 149/373 (39%), Gaps = 75/373 (20%)
Query: 301 RDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCK 360
R + L H++Y QL KK + L K+ G+S
Sbjct: 77 RTGIADLGHLTYEDQLTFKKKQVQDSLYKIA---------GIS--------------DVT 113
Query: 361 LEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACK 420
+E +G YRNK + V + + GF + + + + + + +
Sbjct: 114 VESTIGMTEPLAYRNKAQVPVR-RVNGQLETGFFRKHSHDLIPISDYYIQDKEIDRLI-- 170
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
+ ++ L++ D+ ++ + +G R + VR G G E+ML
Sbjct: 171 --NFTRDLLRRFDIKPYDETEQTGLLRNIVVRRGHYSG------------------EMML 210
Query: 481 IAQVSS-ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL 539
+ + F V+ E++ +AF P +IQ N+ +
Sbjct: 211 VLVTTRPKVFR---VDQVIEKIVEAF-----------PAVVSIIQ------NINDKNTN- 249
Query: 540 RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL 599
+I D + D I DS+ + IS +F+QVNT+ AEKLY ++DL
Sbjct: 250 ---AIFGKDFKTLYGKDT----ITDSMLGNNYAISAQSFYQVNTVMAEKLYQTAIAFSDL 302
Query: 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659
D ++ D G GTIGL+ A V V G+E+ +AV DA +N +NGI N FV AE
Sbjct: 303 SKDDIVIDAYSGIGTIGLSFAKTVKAVYGVEVIEAAVRDAQQNVALNGITNAYFVVDTAE 362
Query: 660 DVMGSLLKDYLNP 672
M + KD + P
Sbjct: 363 HAMATWAKDGIKP 375
>gi|194397238|ref|YP_002037663.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae G54]
gi|419490940|ref|ZP_14030680.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47179]
gi|419532350|ref|ZP_14071866.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47794]
gi|421275793|ref|ZP_15726620.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA52612]
gi|194356905|gb|ACF55353.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae G54]
gi|379594519|gb|EHZ59329.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47179]
gi|379606134|gb|EHZ70883.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47794]
gi|395872213|gb|EJG83312.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA52612]
Length = 543
Score = 92.8 bits (229), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 67/111 (60%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I D + F I+ AF+QVNT AEKLY D+A+L D ++ D G GTIGL++A
Sbjct: 265 ITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVIIDAYSGIGTIGLSVAK 324
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
V V G+E+ AV ++ +NA++N I N +VC AE+ M + LKD + P
Sbjct: 325 HVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKDGIQP 375
>gi|149006286|ref|ZP_01829998.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP18-BS74]
gi|307127423|ref|YP_003879454.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 670-6B]
gi|418225454|ref|ZP_12852083.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae NP112]
gi|419466470|ref|ZP_14006353.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA05248]
gi|419512421|ref|ZP_14052055.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA05578]
gi|421283216|ref|ZP_15734003.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA04216]
gi|421298490|ref|ZP_15749178.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA60080]
gi|147762063|gb|EDK69025.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP18-BS74]
gi|306484485|gb|ADM91354.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 670-6B]
gi|353882762|gb|EHE62573.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae NP112]
gi|379544593|gb|EHZ09737.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA05248]
gi|379636891|gb|EIA01449.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA05578]
gi|395881179|gb|EJG92228.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA04216]
gi|395902446|gb|EJH13379.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA60080]
Length = 543
Score = 92.8 bits (229), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 67/111 (60%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I D + F I+ AF+QVNT AEKLY D+A+L D ++ D G GTIGL++A
Sbjct: 265 ITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVIIDAYSGIGTIGLSVAK 324
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
V V G+E+ AV ++ +NA++N I N +VC AE+ M + LKD + P
Sbjct: 325 HVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKDGIQP 375
>gi|421206483|ref|ZP_15663543.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2090008]
gi|421229675|ref|ZP_15686346.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2061376]
gi|421291901|ref|ZP_15742639.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA56348]
gi|421311836|ref|ZP_15762441.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA58981]
gi|395576122|gb|EJG36680.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2090008]
gi|395596083|gb|EJG56306.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2061376]
gi|395894118|gb|EJH05099.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA56348]
gi|395911225|gb|EJH22093.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA58981]
Length = 543
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 67/111 (60%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I D + F I+ AF+QVNT AEKLY D+A+L D ++ D G GTIGL++A
Sbjct: 265 ITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVIIDAYSGIGTIGLSVAK 324
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
V V G+E+ AV ++ +NA++N I N +VC AE+ M + LKD + P
Sbjct: 325 HVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKDGIQP 375
>gi|365902578|ref|ZP_09440401.1| RNA methyltransferase, TrmA family protein [Lactobacillus
malefermentans KCTC 3548]
Length = 455
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 91/371 (24%), Positives = 142/371 (38%), Gaps = 79/371 (21%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ PL H++Y QL+ K + I +L K N I LP
Sbjct: 85 IAPLQHLAYDAQLKFKHDQIQNLLNKTDLN--------------------IDVLPT---- 120
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
+G YRNK + V + + GF + + V + + P + E
Sbjct: 121 -IGMDDPTHYRNKAQVPVR-MVNGQLETGFYRQHSHDLVPIEDYYIQDPKIDEAIV---- 174
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
+ ++ L++ + +N ++G R L +R G N + + I +
Sbjct: 175 VVRDLLRKYHIEPFNEASHTGVVRNLMIRRGYYS----------------NETMICFITR 218
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLS 543
D +V TA P + T++V +Q +NV
Sbjct: 219 TQKLPMVDELVKE------------ITAQLPEV--TSIVQNINQAKTNVIMG-------- 256
Query: 544 IPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGP 601
+ N V+ + I D + L F ISPT+F+QVN + EKLY L + L
Sbjct: 257 ---------KKNKVLFGKETISDKLLGLTFAISPTSFYQVNPVQTEKLYKLAIEQVGLSG 307
Query: 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661
+ D CG GTI L +A V G+E+ A A+ DA NA+ N + N +F KAED
Sbjct: 308 KETVIDAYCGIGTISLAMAEHAKQVYGVEIVADAIEDAKVNAQKNHLNNIQFEVGKAEDK 367
Query: 662 MGSLLKDYLNP 672
M + L P
Sbjct: 368 MAEWQQAGLKP 378
>gi|373452862|ref|ZP_09544771.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium sp.
3_1_31]
gi|371965059|gb|EHO82561.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium sp.
3_1_31]
Length = 533
Score = 92.4 bits (228), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 85/352 (24%), Positives = 142/352 (40%), Gaps = 82/352 (23%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L HMSY QL KK + +++++ + L ++E +LG
Sbjct: 82 LQHMSYKEQLAFKKQKVQDVIERIAK------------------------LNVQVEDVLG 117
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
+ YRNK + VG ++ + GF +R + + C SE K ++ Q
Sbjct: 118 MAQPDHYRNKGQIPVG-VVKGQVVTGF----YRINSNTIIDTDSCGIQSE---KINAVLQ 169
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
++ ++ N+G +R L ++ G EVM++ V
Sbjct: 170 TMR-----SLFKKYGNAGVFRHLLIKHAFVTG------------------EVMVVWIVRQ 206
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
F + E + + + P + L + + NV L
Sbjct: 207 KKF------AHREEMVQEL----VQTIPEIKSVVLNLNTRE--DNVILGKQEEVLYG--- 251
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
E+ I D I+ L+F IS +F+QVN + + LY ++ +L + +
Sbjct: 252 ------------ESFITDEINGLKFHISAKSFYQVNPVQTKVLYGKALEFCNLKGNETVI 299
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658
D+ CG GTI + LA + G VIGIE+ AV DA NA +NG+ N +FVC+ A
Sbjct: 300 DLYCGVGTISMFLAQKAGKVIGIEIVEQAVRDARENAALNGLDNVKFVCSDA 351
>gi|418199915|ref|ZP_12836360.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47976]
gi|353864962|gb|EHE44871.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47976]
Length = 543
Score = 92.4 bits (228), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 95/378 (25%), Positives = 150/378 (39%), Gaps = 73/378 (19%)
Query: 295 LKVKSARDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREI 354
L + R + L H+SY QL+ K + L K+
Sbjct: 71 LDLAYLRSGIADLGHLSYPEQLKFKTKQVKDSLYKIA----------------------- 107
Query: 355 GGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNV 414
G ++ LG YRNK + V + GF N + + + P +
Sbjct: 108 GIADVEVAETLGMEHPVKYRNKAQVPVR-RVNGVLETGFFRKNSHNLMPLEDFFIQDPVI 166
Query: 415 SEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVN 474
++ ++ L++ DL ++ + SG R L VR G G+ +
Sbjct: 167 DQVVVA----LRDLLRRFDLKPYDEKEQSGLIRNLVVRRGHYSGQIM------------- 209
Query: 475 ISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAP 534
V+L+A D ++ E++ K F P V+Q+ + A
Sbjct: 210 ---VVLVATRPKVFRVDQLI----EQVIKQF-----------PEIVSVMQNINDQNTNAI 251
Query: 535 ADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGG 594
R L G+ I D + F I+ AF+QVNT AEKLY
Sbjct: 252 FGKEWRTLY-----GQD---------YITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAI 297
Query: 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654
D+A+L D ++ D G GTIGL++A V V G+E+ AV ++ +NA++N I N +V
Sbjct: 298 DFAELKKDDVVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYV 357
Query: 655 CAKAEDVMGSLLKDYLNP 672
C AE+ M + LKD + P
Sbjct: 358 CDTAENAMKNWLKDGIQP 375
>gi|28211569|ref|NP_782513.1| tRNA (uracil-5-) -methyltransferase [Clostridium tetani E88]
gi|50401760|sp|Q892Z2.1|Y1941_CLOTE RecName: Full=Uncharacterized RNA methyltransferase CTC_01941
gi|28204010|gb|AAO36450.1| tRNA (uracil-5-) -methyltransferase [Clostridium tetani E88]
Length = 456
Score = 92.4 bits (228), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 84/356 (23%), Positives = 140/356 (39%), Gaps = 75/356 (21%)
Query: 310 MSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPL 369
+ Y QLE K++ I ++ KK + P I GSP
Sbjct: 87 IPYEKQLEIKQHEILELFKKANLDGFDFLP------------------------IEGSPK 122
Query: 370 VNGYRNKCEFSVG-YSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEF 428
YRNK EF+ G + +G G+ + +E C V E + +
Sbjct: 123 QYEYRNKMEFTFGDLKKGGELNLGMHAKGMSFGIISADE---CKIVDEDYRNILNATLNY 179
Query: 429 LQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSAT 488
++ LP + G+ R L +R+ + G+ +L+ V+++
Sbjct: 180 FREKQLPHYRIMAREGYLRNLVIRKAENTGE-------------------VLVNLVTTSQ 220
Query: 489 FDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKAD 548
D + E+ + K+ L ++ + +S+V D
Sbjct: 221 IDFNL--DEYTEIIKSINYKGN-------LVGILHTINDSLSDVVQCDKL---------- 261
Query: 549 GEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
+++ R I + + L+F I+P +FFQ N+ AEKLYS+ D+ +F
Sbjct: 262 -------NILYGRDYIIEDLLGLKFKITPLSFFQTNSKGAEKLYSIVRDFIGESKSKTVF 314
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
D+ CGTGTIG +A VIGIE+ AV A NA++N + NC F+ V+
Sbjct: 315 DLYCGTGTIGQIVAPEAKKVIGIELIEEAVESARENAKLNNLNNCEFIAGDIAQVI 370
>gi|257066487|ref|YP_003152743.1| TrmA family RNA methyltransferase [Anaerococcus prevotii DSM 20548]
gi|256798367|gb|ACV29022.1| RNA methyltransferase, TrmA family [Anaerococcus prevotii DSM
20548]
Length = 457
Score = 92.4 bits (228), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 122/295 (41%), Gaps = 52/295 (17%)
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASI-- 424
SP YRNK E++ G +K +LG R+ E VD N + I + +I
Sbjct: 120 SPKTKAYRNKMEYTFG---DSKKGGDLVLGLHRQN--RFYEIVDTTNCNIIDGDFNTIRE 174
Query: 425 -FQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLI-A 482
Q + ++ +++ G R L +R+ G E+M+I
Sbjct: 175 SVQAYFREKKTDFYHKRTREGLLRHLIIRKAHRTG------------------EIMVILV 216
Query: 483 QVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLL 542
S +FD +N +L S+ L ++ + V N +PADA +
Sbjct: 217 TTSDESFDSLRINLFLNKLL------------SIDLVGKIVSVYH-VINDSPADAVI--- 260
Query: 543 SIPKADGEPEESNDVV-EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGP 601
E+ N + + I + + L F ISP +FFQ N AEKLY D A++
Sbjct: 261 --------VEKLNLIYGKEFIKEEMLGLTFNISPFSFFQPNIYTAEKLYQKAFDLANINQ 312
Query: 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCA 656
+ D+ GTGTI +A R GIE+ A+ A NA+IN I N F+C
Sbjct: 313 SMDVLDLYSGTGTITQVMAQRARTATGIEIVEEAIDKAWENAKINEIDNINFLCG 367
>gi|406838014|ref|ZP_11097608.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus vini DSM 20605]
Length = 463
Score = 92.4 bits (228), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 88/360 (24%), Positives = 151/360 (41%), Gaps = 79/360 (21%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H++Y QLE K++ + Q LKK R G +L +LG
Sbjct: 91 LEHLAYPKQLEFKRDIVKQALKKY---------------------RPTGYKSYQLRPMLG 129
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
YRNK +F V K + G +R G + VD P S + +
Sbjct: 130 MSEPYYYRNKAQFQV-----RKVNDRVIAGLYRRGS---HQLVDLPTFSTQRPATMKVMR 181
Query: 427 EF---LQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
+ +++ LPV++ + +G + L VRE + G +V ++ V SE
Sbjct: 182 QLCRIIEELQLPVYDEKQAAGIIKTLIVRESMATG--------QVQVTIVTNSEKF---- 229
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQ-GVSNVAPADAPLRLL 542
+ +F + V++ LP ++Q++ G +++ RL
Sbjct: 230 IQQRSFVERVIHD-------------------LPEVVSLMQNYNPGKTSLIWGKKTKRLY 270
Query: 543 SIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPD 602
+ +I + I++ ++ +S AFFQ+N+ KLY D +L
Sbjct: 271 G---------------QQQITEKIADKKYQLSAQAFFQLNSAQTLKLYQAIADALNLTGK 315
Query: 603 TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662
L D CG GTIG+ LA +V V G+++ +A++DA +NA++N N + C KAE ++
Sbjct: 316 ENLIDAYCGAGTIGIYLADQVAQVRGMDIIPAAIADARQNAKLNHCFNTHYECGKAEQII 375
>gi|393199259|ref|YP_006461101.1| SAM-dependent methyltransferase [Solibacillus silvestris StLB046]
gi|327438590|dbj|BAK14955.1| SAM-dependent methyltransferase [Solibacillus silvestris StLB046]
Length = 454
Score = 92.4 bits (228), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 104/421 (24%), Positives = 167/421 (39%), Gaps = 95/421 (22%)
Query: 261 ESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLKVKSARDVVTP-----------LAH 309
+ A+PGE AE H + G A + L+ KS V P L H
Sbjct: 36 QGALPGETAEIHVMKTL------KNYGFAKVVNILE-KSPDRVEAPCVYFSQCGGCQLQH 88
Query: 310 MSYSVQLEHKKNSIAQMLKKLTRNARKACP-NGVSLPEWIMKSREIGGLPCKLEGILGSP 368
+SY QL+ K+N +A ++K+L + P G+ P W
Sbjct: 89 LSYEGQLKWKQNMVANVMKRLGKIDAPVHPVKGMEEP-W--------------------- 126
Query: 369 LVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEF 428
YRNK + + + GF ++ ++ + C + A + +
Sbjct: 127 ---HYRNKSQIPFAQNESGQMVAGF----YKTKSHSIVDMERCLIQTGEADVVMADLKRE 179
Query: 429 LQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSAT 488
L+ L ++ + G R + VR+GR+ G EVM++ S
Sbjct: 180 LEILGLRPYDEKSHQGMLRHVVVRKGRATG------------------EVMVVLVTKSKK 221
Query: 489 FDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQG-VSNVAPADAPLRLLSIPKA 547
F A ++ E++ +P ++Q+ G +NV + L
Sbjct: 222 FPQA--SAVIEKI-----------RALIPNVTSIVQNVNGEKTNVIFGNDTFTLWG---- 264
Query: 548 DGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFD 607
D +E D+I N+RF IS +F+QVN + E LY D+A L + + D
Sbjct: 265 -------KDTIE----DTIGNVRFEISARSFYQVNPVQTEVLYKQALDYAQLTGNERVID 313
Query: 608 VCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLK 667
CG G+I L LA + G V+G+E+ A+ DA RNA +NG N F AE+V+ K
Sbjct: 314 AYCGIGSISLFLAQKAGHVMGVEIVEQAIEDAKRNAALNGFTNTYFEAGPAEEVIPRWYK 373
Query: 668 D 668
+
Sbjct: 374 E 374
>gi|389583878|dbj|GAB66612.1| hypothetical protein PCYB_093970 [Plasmodium cynomolgi strain B]
Length = 506
Score = 92.4 bits (228), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 84/367 (22%), Positives = 141/367 (38%), Gaps = 98/367 (26%)
Query: 365 LGSPL------VNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEE----------- 407
+ SPL +NGYRNKCEF++ Y +GF+ G R V E
Sbjct: 89 IDSPLFPDEKGINGYRNKCEFTISYDESNNVEIGFVTGKMRTDVNDTGEDKNGTDDNNCN 148
Query: 408 ---------------------------------PV-----DCPNVSEIACKYASIFQEFL 429
P+ +C ++ + + +
Sbjct: 149 FSEHNISNSASPLNESQSTKLRNKKQKQAYYLNPIVKSVENCVHIHPCMKQVVQEVKSII 208
Query: 430 QQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS--A 487
+ S PV++R +G WR L VR E+M+ Q S
Sbjct: 209 KDSSYPVFDRVYKTGVWRILVVRFNSQK-------------------ELMITVQTYSLDQ 249
Query: 488 TFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKA 547
+ RL K A S + +L +Q+H+ S
Sbjct: 250 KKKKEIKKLLINRLTKK-KDEACMSFSDYKVVSLYLQEHEN--------------SNDST 294
Query: 548 DGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG--PDTLL 605
+ P E VE + + I RF ++P+ FFQVN + E LY D+ ++ +
Sbjct: 295 NQSPNEHLWGVEY-LEEIILKNRFLLTPSCFFQVNHTSCEILYKRVIDYINISEKKKNYI 353
Query: 606 FDVCCGTGTIGLTLAHRVG----MVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661
FD+CCGTGTI + A+ + ++GI++ ++ A++NAE+N IKN +F+ + E++
Sbjct: 354 FDLCCGTGTISICAANELKGKDVHIVGIDICEDSIICANKNAEVNKIKNYKFIQGRVEEL 413
Query: 662 MGSLLKD 668
+ +K+
Sbjct: 414 FANEIKN 420
>gi|379705566|ref|YP_005204025.1| RNA methyl transferase [Streptococcus infantarius subsp.
infantarius CJ18]
gi|374682265|gb|AEZ62554.1| RNA methyl transferase [Streptococcus infantarius subsp.
infantarius CJ18]
Length = 454
Score = 92.4 bits (228), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 64/111 (57%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I DS+ ++ IS +F+QVNT AEKLY D++DL D + D G GTIGL+ A
Sbjct: 265 IVDSMLGNQYEISARSFYQVNTEMAEKLYQTAIDFSDLTADDTVIDAYSGIGTIGLSFAK 324
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
V V G+E+ AV DA RNA +NGI N +V AE M + KD + P
Sbjct: 325 NVKAVYGVEVIEEAVKDAKRNAALNGITNAHYVADSAEHAMATWSKDGIKP 375
>gi|291518465|emb|CBK73686.1| 23S rRNA m(5)U-1939 methyltransferase [Butyrivibrio fibrisolvens
16/4]
Length = 428
Score = 92.4 bits (228), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 88/322 (27%), Positives = 135/322 (41%), Gaps = 50/322 (15%)
Query: 362 EGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVD-CPNVSEIACK 420
EGI SP YRNK EFS G ++ P LG ++G VD C + +
Sbjct: 118 EGIKSSPKQFEYRNKMEFSFGDEVKDGP---LTLGMHKKGSFYDVVTVDGCQIIDADMRR 174
Query: 421 YASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVML 480
+I E+ + P + + + G+ R L VR+ G+ L +L + +I E+ L
Sbjct: 175 VLAITLEYFANAKQPYYRKNTHEGYLRHLLVRKAAKTGEIL--VDLVTSTQISSIYEIAL 232
Query: 481 IAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540
+A A D D +G L
Sbjct: 233 LAGWKQALLD--------------------------------CPDWEG-----KLTGILH 255
Query: 541 LLSIPKADGEPEESNDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWAD 598
+ AD +E +++ + + + L F ISP +FFQ N+L AE LYS D+
Sbjct: 256 TKNDRAADVVADEGTEILYGQDWFKEELLGLSFTISPFSFFQTNSLGAEVLYSTARDFIS 315
Query: 599 LGPDTL-LFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAK 657
G D ++D+ GTGTI +A V G+E+ A AV A NA++NG+ NC F+
Sbjct: 316 TGADGAEVYDLYSGTGTIAQVIAPAAKHVTGVEIIAEAVEAAKENAKLNGLDNCDFIAGD 375
Query: 658 AEDVMGSLLK--DY--LNPLRE 675
V+ + + DY L+P R+
Sbjct: 376 VLKVLDDITEKPDYIILDPPRD 397
>gi|171779969|ref|ZP_02920873.1| hypothetical protein STRINF_01756 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171281317|gb|EDT46752.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
infantarius subsp. infantarius ATCC BAA-102]
Length = 454
Score = 92.4 bits (228), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 64/111 (57%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I DS+ ++ IS +F+QVNT AEKLY D++DL D + D G GTIGL+ A
Sbjct: 265 IVDSMLGNQYEISARSFYQVNTEMAEKLYQTAIDFSDLTADDTVIDAYSGIGTIGLSFAK 324
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
V V G+E+ AV DA RNA +NGI N +V AE M + KD + P
Sbjct: 325 NVKAVYGVEVIEEAVKDAKRNAALNGITNAHYVADSAEHAMATWSKDGIKP 375
>gi|170754817|ref|YP_001783005.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
B1 str. Okra]
gi|169120029|gb|ACA43865.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
B1 str. Okra]
Length = 461
Score = 92.4 bits (228), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 86/363 (23%), Positives = 150/363 (41%), Gaps = 76/363 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGL---PCKLEG 363
+ H SY QLE KK + L++ IG L K+E
Sbjct: 88 VQHYSYKAQLEFKKQRVIDSLER------------------------IGKLDIDKIKIED 123
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
+G YRNK + V + + + +GF ++ V + +C E A K
Sbjct: 124 TIGMENPYRYRNKIQMPVRFE-KGEIKIGF----YKSRTHEVADVKECFIQDEQADKIIQ 178
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
I + ++ + ++ +N GF R + VR+ +N E+ + V++ +
Sbjct: 179 IIRNWMVKHNISAYNEETGKGFIRHIMVRKA--------FKNKELML-------VIVTNK 223
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLS 543
+ + ++N + K F L + +++ + +NV + + L
Sbjct: 224 EEEIPYKEELINE----VIKEF----------LNIKSIIQNINTKKTNVILGEKCITLWG 269
Query: 544 IPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDT 603
+ I D I +F ISP +FFQVN + E LY ++A+L +
Sbjct: 270 ---------------KDTITDYIDKFKFNISPLSFFQVNPIQTEVLYKKALEFANLKGEE 314
Query: 604 LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMG 663
++FD CGTGTI L L+ + V G+E+ A+ +A NA+ N I N F K+E+V+
Sbjct: 315 IVFDAYCGTGTISLFLSQKAKKVYGVEIIKEAIDNAKDNAKENRIDNAEFFVGKSEEVIP 374
Query: 664 SLL 666
L+
Sbjct: 375 DLI 377
>gi|225854529|ref|YP_002736041.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae JJA]
gi|421236169|ref|ZP_15692770.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2071004]
gi|444388298|ref|ZP_21186285.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PCS125219]
gi|444389840|ref|ZP_21187755.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PCS70012]
gi|444392417|ref|ZP_21190148.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PCS81218]
gi|444395466|ref|ZP_21193010.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0002]
gi|444397488|ref|ZP_21194971.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0006]
gi|444400665|ref|ZP_21198047.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0007]
gi|444408703|ref|ZP_21205336.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0010]
gi|444410353|ref|ZP_21206893.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0076]
gi|444413203|ref|ZP_21209519.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0153]
gi|444417332|ref|ZP_21213377.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0360]
gi|225722765|gb|ACO18618.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae JJA]
gi|395605088|gb|EJG65220.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2071004]
gi|444249912|gb|ELU56397.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PCS125219]
gi|444256303|gb|ELU62641.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PCS70012]
gi|444258109|gb|ELU64439.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0002]
gi|444260145|gb|ELU66453.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0006]
gi|444263466|gb|ELU69634.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PCS81218]
gi|444265636|gb|ELU71633.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0007]
gi|444269530|gb|ELU75337.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0010]
gi|444273362|gb|ELU79035.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0153]
gi|444277787|gb|ELU83284.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0076]
gi|444283983|gb|ELU89151.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0360]
Length = 543
Score = 92.4 bits (228), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 67/111 (60%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I D + F I+ AF+QVNT AEKLY D+A+L D ++ D G GTIGL++A
Sbjct: 265 ITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGLSVAK 324
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
V V G+E+ AV ++ +NA++N I N +VC AE+ M + LKD + P
Sbjct: 325 HVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKDGIQP 375
>gi|405761145|ref|YP_006701741.1| RNA methyltransferase [Streptococcus pneumoniae SPNA45]
gi|404278034|emb|CCM08608.1| putative RNA methyltransferase [Streptococcus pneumoniae SPNA45]
Length = 543
Score = 92.4 bits (228), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 67/111 (60%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I D + F I+ AF+QVNT AEKLY D+A+L D ++ D G GTIGL++A
Sbjct: 265 ITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGLSVAK 324
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
V V G+E+ AV ++ +NA++N I N +VC AE+ M + LKD + P
Sbjct: 325 HVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKDGIQP 375
>gi|148544651|ref|YP_001272021.1| RNA methyltransferase [Lactobacillus reuteri DSM 20016]
gi|184154004|ref|YP_001842345.1| RNA methyltransferase [Lactobacillus reuteri JCM 1112]
gi|148531685|gb|ABQ83684.1| RNA methyltransferase, TrmA family [Lactobacillus reuteri DSM
20016]
gi|183225348|dbj|BAG25865.1| RNA methyltransferase [Lactobacillus reuteri JCM 1112]
Length = 459
Score = 92.4 bits (228), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 92/371 (24%), Positives = 141/371 (38%), Gaps = 78/371 (21%)
Query: 304 VTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEG 363
+ PL H+ Y QL+ K++ I ++L K + EI LP
Sbjct: 85 IAPLGHLKYDAQLKFKQHQIQELLAKAHLD-------------------EIEVLPT---- 121
Query: 364 ILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYAS 423
+G YRNK + V + + GF V + + P + K
Sbjct: 122 -MGMEKPYHYRNKAQVPVK-MVHGQLETGFYKRGSHNLVPIEDFYIQDPEID----KAIV 175
Query: 424 IFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQ 483
+ ++ L+Q + ++ G R + VR G E+M++
Sbjct: 176 VVRDLLRQYHITPYDEQTGKGVIRTVMVRRGYYS------------------HEMMVVL- 216
Query: 484 VSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLS 543
V N++ + K G A P + I D + +N RLL
Sbjct: 217 ---------VTNTKRLPMEKQIVDGIVAGVPEVKSIVQNINDKR--TN--------RLLG 257
Query: 544 IPKADGEPEESNDVVEA--RIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGP 601
N + IHD + + F ISP +F+QVN E+LY D A L
Sbjct: 258 ---------NKNKTLWGADEIHDQLLGIDFAISPLSFYQVNPQQTERLYQTAIDNAGLDG 308
Query: 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661
+ + D CG GTI L +A V G+E+ +A+ DA NA+ NGIKN +FV KAE+
Sbjct: 309 NQTVIDAYCGIGTISLAVAKHAKQVYGVEIVPAAIEDAKHNAKRNGIKNAKFVVGKAEEQ 368
Query: 662 MGSLLKDYLNP 672
+ L P
Sbjct: 369 FAKWQAEGLKP 379
>gi|419534498|ref|ZP_14074001.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA17457]
gi|379565232|gb|EHZ30225.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA17457]
Length = 501
Score = 92.4 bits (228), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 64/102 (62%)
Query: 571 FCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIE 630
F I+ AF+QVNT AEKLY D+A+L D ++ D G GTIGL++A V V G+E
Sbjct: 232 FQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGLSVAKHVKEVYGVE 291
Query: 631 MNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
+ AV ++ +NA++N I N +VC AE+ M + LKD + P
Sbjct: 292 LIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKDGIQP 333
>gi|418202296|ref|ZP_12838726.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA52306]
gi|419455426|ref|ZP_13995386.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae EU-NP04]
gi|421285161|ref|ZP_15735938.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA60190]
gi|421307296|ref|ZP_15757940.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA60132]
gi|353868099|gb|EHE47989.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA52306]
gi|379629883|gb|EHZ94477.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae EU-NP04]
gi|395887140|gb|EJG98155.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA60190]
gi|395907903|gb|EJH18788.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA60132]
Length = 543
Score = 92.4 bits (228), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 67/111 (60%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I D + F I+ AF+QVNT AEKLY D+A+L D ++ D G GTIGL++A
Sbjct: 265 ITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGLSVAK 324
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
V V G+E+ AV ++ +NA++N I N +VC AE+ M + LKD + P
Sbjct: 325 HVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKDGIQP 375
>gi|389575994|ref|ZP_10166022.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium
cellulosolvens 6]
gi|389311479|gb|EIM56412.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium
cellulosolvens 6]
Length = 437
Score = 92.4 bits (228), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 119/301 (39%), Gaps = 55/301 (18%)
Query: 359 CKLEGILGSPLVNG------YRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCP 412
C +EGI V G YRNK V + Q K + G + EG V C
Sbjct: 88 CLMEGIAKVRPVTGMENPYHYRNK----VNAAFQRKRDGKIVSGIYEEGTHNVIPVSSCL 143
Query: 413 NVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISE 472
+ A + + + +++ SG R + +R G G
Sbjct: 144 IEDQKADEIIGTIRRLALSFKVRIYDEDHGSGLLRHVMIRRGHVSG-------------- 189
Query: 473 VNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNV 532
++++I V+S F F A+ P + L + D Q +
Sbjct: 190 ----QILVILVVASPVFPSK----------NNFVKALRAAHPEITSVVLNVNDKQTSMVL 235
Query: 533 APADAPLRLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSL 592
+ L + I D + RF ISP++F+Q+N++ EKLY
Sbjct: 236 GSRNITL-----------------YGKGYIEDILCGCRFRISPSSFYQINSVQTEKLYGK 278
Query: 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCR 652
+ A+L + +FD CG GTIG+T + G VIG+E+N AV DA NA++N I N R
Sbjct: 279 AIELAELTGEETVFDAYCGIGTIGITASAGAGRVIGVELNKDAVRDAAINAKLNDIPNIR 338
Query: 653 F 653
F
Sbjct: 339 F 339
>gi|225861011|ref|YP_002742520.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae Taiwan19F-14]
gi|298230452|ref|ZP_06964133.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae str. Canada MDR_19F]
gi|298255322|ref|ZP_06978908.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae str. Canada MDR_19A]
gi|298502952|ref|YP_003724892.1| TrmA family tRNA (uracil-5-)-methyltransferase [Streptococcus
pneumoniae TCH8431/19A]
gi|387788212|ref|YP_006253280.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae ST556]
gi|417696224|ref|ZP_12345403.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47368]
gi|418082955|ref|ZP_12720156.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA44288]
gi|418085099|ref|ZP_12722283.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47281]
gi|418091522|ref|ZP_12728665.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA44452]
gi|418093975|ref|ZP_12731103.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA49138]
gi|418119573|ref|ZP_12756525.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA18523]
gi|418141711|ref|ZP_12778524.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA13455]
gi|418152865|ref|ZP_12789604.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA16121]
gi|418171242|ref|ZP_12807868.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA19451]
gi|418196063|ref|ZP_12832542.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47688]
gi|418223186|ref|ZP_12849827.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 5185-06]
gi|419422895|ref|ZP_13963110.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA43264]
gi|419427008|ref|ZP_13967191.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 5652-06]
gi|419429188|ref|ZP_13969355.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA11856]
gi|419438134|ref|ZP_13978204.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA13499]
gi|419444753|ref|ZP_13984768.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA19923]
gi|419446896|ref|ZP_13986901.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 7879-04]
gi|419451370|ref|ZP_13991356.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae EU-NP02]
gi|419488964|ref|ZP_14028714.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA44386]
gi|419501785|ref|ZP_14041470.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47628]
gi|419518824|ref|ZP_14058431.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA08825]
gi|419528448|ref|ZP_14067990.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA17719]
gi|421272690|ref|ZP_15723534.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SPAR55]
gi|421288224|ref|ZP_15738987.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA58771]
gi|225726771|gb|ACO22622.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae Taiwan19F-14]
gi|298238547|gb|ADI69678.1| TrmA family tRNA (uracil-5-)-methyltransferase [Streptococcus
pneumoniae TCH8431/19A]
gi|332201499|gb|EGJ15569.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47368]
gi|353756868|gb|EHD37467.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA44288]
gi|353758794|gb|EHD39382.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47281]
gi|353765200|gb|EHD45747.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA44452]
gi|353765323|gb|EHD45868.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA49138]
gi|353789600|gb|EHD69993.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA18523]
gi|353805962|gb|EHD86236.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA13455]
gi|353817416|gb|EHD97618.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA16121]
gi|353835974|gb|EHE16063.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA19451]
gi|353861514|gb|EHE41451.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47688]
gi|353879312|gb|EHE59138.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 5185-06]
gi|379137954|gb|AFC94745.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae ST556]
gi|379538139|gb|EHZ03320.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA13499]
gi|379551136|gb|EHZ16231.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA11856]
gi|379564471|gb|EHZ29467.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA17719]
gi|379572446|gb|EHZ37403.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA19923]
gi|379587421|gb|EHZ52269.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA43264]
gi|379587857|gb|EHZ52704.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA44386]
gi|379601020|gb|EHZ65797.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47628]
gi|379614436|gb|EHZ79146.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 7879-04]
gi|379618461|gb|EHZ83136.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 5652-06]
gi|379623075|gb|EHZ87709.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae EU-NP02]
gi|379641803|gb|EIA06338.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA08825]
gi|395875799|gb|EJG86877.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SPAR55]
gi|395886787|gb|EJG97803.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA58771]
Length = 543
Score = 92.4 bits (228), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 67/111 (60%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I D + F I+ AF+QVNT AEKLY D+A+L D ++ D G GTIGL++A
Sbjct: 265 ITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGLSVAK 324
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
V V G+E+ AV ++ +NA++N I N +VC AE+ M + LKD + P
Sbjct: 325 HVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKDGIQP 375
>gi|148984983|ref|ZP_01818226.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP3-BS71]
gi|387757405|ref|YP_006064384.1| putative RNA methyltransferase [Streptococcus pneumoniae OXC141]
gi|418232095|ref|ZP_12858682.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA07228]
gi|418236535|ref|ZP_12863103.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA19690]
gi|419479854|ref|ZP_14019661.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA19101]
gi|419482048|ref|ZP_14021841.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA40563]
gi|419499548|ref|ZP_14039245.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47597]
gi|419520954|ref|ZP_14060550.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA05245]
gi|421227198|ref|ZP_15683906.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2072047]
gi|147922681|gb|EDK73798.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP3-BS71]
gi|301799994|emb|CBW32584.1| putative RNA methyltransferase [Streptococcus pneumoniae OXC141]
gi|353886822|gb|EHE66602.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA07228]
gi|353892767|gb|EHE72515.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA19690]
gi|379539968|gb|EHZ05145.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA05245]
gi|379571020|gb|EHZ35979.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA19101]
gi|379580922|gb|EHZ45811.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA40563]
gi|379601318|gb|EHZ66093.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47597]
gi|395596025|gb|EJG56249.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2072047]
gi|429316030|emb|CCP35683.1| putative RNA methyltransferase [Streptococcus pneumoniae SPN034156]
gi|429319374|emb|CCP32636.1| putative RNA methyltransferase [Streptococcus pneumoniae SPN034183]
gi|429321190|emb|CCP34610.1| putative RNA methyltransferase [Streptococcus pneumoniae SPN994039]
gi|429323010|emb|CCP30651.1| putative RNA methyltransferase [Streptococcus pneumoniae SPN994038]
Length = 543
Score = 92.4 bits (228), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 67/111 (60%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I D + F I+ AF+QVNT AEKLY D+A+L D ++ D G GTIGL++A
Sbjct: 265 ITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGLSVAK 324
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
V V G+E+ AV ++ +NA++N I N +VC AE+ M + LKD + P
Sbjct: 325 HVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKDGIQP 375
>gi|168487479|ref|ZP_02711987.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae CDC1087-00]
gi|419510654|ref|ZP_14050297.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae NP141]
gi|419530333|ref|ZP_14069862.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA40028]
gi|421215259|ref|ZP_15672187.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2070109]
gi|183569696|gb|EDT90224.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae CDC1087-00]
gi|379573852|gb|EHZ38799.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA40028]
gi|379632707|gb|EHZ97279.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae NP141]
gi|395581392|gb|EJG41864.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2070109]
Length = 543
Score = 92.4 bits (228), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 67/111 (60%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I D + F I+ AF+QVNT AEKLY D+A+L D ++ D G GTIGL++A
Sbjct: 265 ITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGLSVAK 324
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
V V G+E+ AV ++ +NA++N I N +VC AE+ M + LKD + P
Sbjct: 325 HVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKDGIQP 375
>gi|407978257|ref|ZP_11159090.1| TrmA family RNA methyltransferase [Bacillus sp. HYC-10]
gi|407415264|gb|EKF36871.1| TrmA family RNA methyltransferase [Bacillus sp. HYC-10]
Length = 459
Score = 92.4 bits (228), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 66/110 (60%)
Query: 559 EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLT 618
E I+D+I +++F IS +F+QVN + LY ++A+L + + D CG GTI L
Sbjct: 270 EEYIYDTIGDIKFAISARSFYQVNPAQTKVLYDKALEYAELQGEETVIDAYCGIGTISLF 329
Query: 619 LAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
LA + G V G+E+ A+ DA RNA +NGIKN F +AE V+ + K+
Sbjct: 330 LAQKAGRVYGVEIVPEAIEDAKRNASLNGIKNVEFAVGEAETVIPNWYKE 379
>gi|386044059|ref|YP_005962864.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
10403S]
gi|404411052|ref|YP_006696640.1| TrmA/RumA/YefA-family RNA methyltransferase [Listeria monocytogenes
SLCC5850]
gi|345537293|gb|AEO06733.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
10403S]
gi|404230878|emb|CBY52282.1| RNA methyltransferase, TrmA/RumA/YefA-family [Listeria
monocytogenes SLCC5850]
Length = 453
Score = 92.4 bits (228), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 91/361 (25%), Positives = 144/361 (39%), Gaps = 75/361 (20%)
Query: 307 LAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILG 366
L H+SY QLE K+N + + +K+ IG L ++ LG
Sbjct: 87 LQHLSYDGQLEFKRNQVEETMKR------------------------IGKLNVEVPETLG 122
Query: 367 SPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQ 426
YRNK + VG+ + K GF +++ A+ + C +E +
Sbjct: 123 MENPWRYRNKSQVPVGF-VNGKLAAGF----YQKRSHAIIDMSTCLIHNEQGDFAVQKTR 177
Query: 427 EFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSS 486
E L + ++ G R + R R+ G+ + ++L+
Sbjct: 178 EILAKYGTEPYDEQTGKGDIRHIMTRFARTTGQLM----------------IVLVTTKER 221
Query: 487 ATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPK 546
F + +V E+L LT++V + +NV D L
Sbjct: 222 MPFKEEIVRDLVEQLE---------------LTSIVQNINPHKTNVIFGDRTKTLWG--- 263
Query: 547 ADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLF 606
D++E D+I +RF IS +F+QVN L E LY D A+L + +
Sbjct: 264 --------KDIIE----DTIHGIRFAISARSFYQVNPLQTEVLYQQAIDAAELTGEETVI 311
Query: 607 DVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666
D CG G+I L LA + V G+E+ A+ DA NAE+N + N F KAE+V+ S
Sbjct: 312 DAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPSWY 371
Query: 667 K 667
K
Sbjct: 372 K 372
>gi|148994234|ref|ZP_01823527.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP9-BS68]
gi|168488850|ref|ZP_02713049.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP195]
gi|168576242|ref|ZP_02722136.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae MLV-016]
gi|417678981|ref|ZP_12328378.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA17570]
gi|418125652|ref|ZP_12762562.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA44511]
gi|418148452|ref|ZP_12785217.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA13856]
gi|418191572|ref|ZP_12828076.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47388]
gi|419470979|ref|ZP_14010838.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA07914]
gi|419484109|ref|ZP_14023885.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA43257]
gi|421220174|ref|ZP_15677023.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2070425]
gi|421223482|ref|ZP_15680259.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2070531]
gi|421238764|ref|ZP_15695331.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2071247]
gi|421244846|ref|ZP_15701347.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2081685]
gi|421278800|ref|ZP_15729608.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA17301]
gi|421294278|ref|ZP_15745001.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA56113]
gi|421300891|ref|ZP_15751561.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA19998]
gi|147927375|gb|EDK78406.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP9-BS68]
gi|183572483|gb|EDT93011.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP195]
gi|183577973|gb|EDT98501.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae MLV-016]
gi|332073360|gb|EGI83839.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA17570]
gi|353797618|gb|EHD77951.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA44511]
gi|353813127|gb|EHD93360.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA13856]
gi|353857473|gb|EHE37436.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47388]
gi|379545695|gb|EHZ10834.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA07914]
gi|379583620|gb|EHZ48497.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA43257]
gi|395585941|gb|EJG46319.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2070531]
gi|395588178|gb|EJG48511.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2070425]
gi|395602027|gb|EJG62172.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2071247]
gi|395609346|gb|EJG69433.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2081685]
gi|395880233|gb|EJG91286.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA17301]
gi|395894568|gb|EJH05548.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA56113]
gi|395898451|gb|EJH09395.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA19998]
Length = 543
Score = 92.4 bits (228), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 67/111 (60%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I D + F I+ AF+QVNT AEKLY D+A+L D ++ D G GTIGL++A
Sbjct: 265 ITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGLSVAK 324
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
V V G+E+ AV ++ +NA++N I N +VC AE+ M + LKD + P
Sbjct: 325 HVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKDGIQP 375
>gi|251778308|ref|ZP_04821228.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
E1 str. 'BoNT E Beluga']
gi|243082623|gb|EES48513.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
E1 str. 'BoNT E Beluga']
Length = 455
Score = 92.4 bits (228), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 67/110 (60%)
Query: 559 EARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLT 618
E I D I +F ISP +FFQVN + E LY+ ++A+L + +FD CGTGTI L
Sbjct: 266 EDTIKDYIGEFKFNISPLSFFQVNPIQTEILYNKALEYAELTENETVFDAYCGTGTITLF 325
Query: 619 LAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668
L+ + V G+E+ SA+ +A NA++N + N F K+E+V+ +L+ D
Sbjct: 326 LSQKAKKVYGVEIIESAIINAKENAKLNNVDNVEFFVGKSEEVIPNLIND 375
>gi|225856683|ref|YP_002738194.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae P1031]
gi|225725093|gb|ACO20945.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae P1031]
Length = 543
Score = 92.4 bits (228), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 67/111 (60%)
Query: 562 IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH 621
I D + F I+ AF+QVNT AEKLY D+A+L D ++ D G GTIGL++A
Sbjct: 265 ITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGLSVAK 324
Query: 622 RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNP 672
V V G+E+ AV ++ +NA++N I N +VC AE+ M + LKD + P
Sbjct: 325 HVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKDGIQP 375
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.312 0.130 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,614,511,763
Number of Sequences: 23463169
Number of extensions: 554363945
Number of successful extensions: 1486857
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5399
Number of HSP's successfully gapped in prelim test: 1014
Number of HSP's that attempted gapping in prelim test: 1473196
Number of HSP's gapped (non-prelim): 13075
length of query: 783
length of database: 8,064,228,071
effective HSP length: 151
effective length of query: 632
effective length of database: 8,816,256,848
effective search space: 5571874327936
effective search space used: 5571874327936
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 81 (35.8 bits)