Query 003969
Match_columns 783
No_of_seqs 591 out of 3690
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 15:12:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003969.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003969hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2187 tRNA uracil-5-methyltr 100.0 4.9E-69 1.1E-73 592.9 32.3 459 168-782 28-488 (534)
2 COG2265 TrmA SAM-dependent met 100.0 1.7E-48 3.7E-53 436.8 35.5 321 301-782 74-394 (432)
3 TIGR00479 rumA 23S rRNA (uraci 100.0 1.7E-47 3.6E-52 432.4 39.5 332 301-782 63-394 (431)
4 TIGR02085 meth_trns_rumB 23S r 100.0 2.6E-47 5.7E-52 423.2 38.0 323 301-782 9-332 (374)
5 PRK05031 tRNA (uracil-5-)-meth 100.0 4.4E-44 9.5E-49 395.7 35.7 314 302-782 1-318 (362)
6 PRK13168 rumA 23S rRNA m(5)U19 100.0 7.3E-40 1.6E-44 371.4 36.8 313 301-782 85-398 (443)
7 PF05958 tRNA_U5-meth_tr: tRNA 100.0 8.1E-41 1.8E-45 368.4 27.2 302 311-782 1-308 (352)
8 TIGR02143 trmA_only tRNA (urac 100.0 6.8E-38 1.5E-42 345.3 34.1 256 311-664 1-260 (353)
9 PRK03522 rumB 23S rRNA methylu 100.0 6.1E-33 1.3E-37 301.8 32.2 266 386-782 7-272 (315)
10 PRK10909 rsmD 16S rRNA m(2)G96 99.6 1.6E-15 3.5E-20 155.1 14.0 133 566-782 20-157 (199)
11 PRK04338 N(2),N(2)-dimethylgua 99.5 1.2E-13 2.7E-18 154.1 15.3 89 575-663 30-121 (382)
12 PLN03213 repressor of silencin 99.4 4.2E-13 9.2E-18 146.9 9.0 83 162-244 7-92 (759)
13 TIGR03704 PrmC_rel_meth putati 99.4 4.4E-12 9.6E-17 134.3 15.0 93 565-662 51-146 (251)
14 KOG0125 Ataxin 2-binding prote 99.4 8.1E-13 1.7E-17 139.4 8.7 81 165-245 96-179 (376)
15 PLN03134 glycine-rich RNA-bind 99.4 3.4E-12 7.4E-17 124.2 10.7 81 162-242 31-116 (144)
16 TIGR03533 L3_gln_methyl protei 99.3 1.3E-11 2.8E-16 133.0 15.6 95 565-660 86-183 (284)
17 TIGR00095 RNA methyltransferas 99.3 4.6E-11 9.9E-16 121.4 16.4 95 567-664 17-114 (189)
18 PRK11805 N5-glutamine S-adenos 99.3 3E-11 6.6E-16 131.6 15.5 95 566-661 99-196 (307)
19 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.3 8.5E-12 1.9E-16 137.2 10.0 79 163-241 267-350 (352)
20 PF00076 RRM_1: RNA recognitio 99.3 1.1E-11 2.3E-16 103.6 7.8 66 168-233 1-70 (70)
21 PF03602 Cons_hypoth95: Conser 99.3 7.4E-11 1.6E-15 119.4 14.2 98 567-666 9-109 (183)
22 PF05175 MTS: Methyltransferas 99.2 5.1E-11 1.1E-15 118.7 12.5 87 569-659 2-91 (170)
23 TIGR00080 pimt protein-L-isoas 99.2 1.9E-11 4.2E-16 126.2 9.7 97 564-660 40-139 (215)
24 COG2890 HemK Methylase of poly 99.2 1.6E-11 3.4E-16 132.1 9.1 112 565-699 77-190 (280)
25 COG1092 Predicted SAM-dependen 99.2 2.2E-10 4.9E-15 127.7 16.1 100 562-668 180-287 (393)
26 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.2 4E-11 8.7E-16 131.9 9.2 77 165-241 3-84 (352)
27 TIGR00536 hemK_fam HemK family 99.2 7.5E-11 1.6E-15 127.1 9.9 118 565-703 79-200 (284)
28 PRK15128 23S rRNA m(5)C1962 me 99.2 6.3E-10 1.4E-14 125.1 17.7 98 562-666 183-288 (396)
29 PRK11783 rlmL 23S rRNA m(2)G24 99.2 3.6E-10 7.9E-15 135.8 16.1 101 561-664 500-604 (702)
30 TIGR01659 sex-lethal sex-letha 99.2 1.1E-10 2.4E-15 129.0 10.3 78 162-239 104-186 (346)
31 COG0742 N6-adenine-specific me 99.1 9.6E-10 2.1E-14 110.7 14.8 96 568-665 11-109 (187)
32 COG2263 Predicted RNA methylas 99.1 6E-10 1.3E-14 111.5 13.1 81 579-661 24-105 (198)
33 PF14259 RRM_6: RNA recognitio 99.1 1.6E-10 3.5E-15 97.5 7.7 66 168-233 1-70 (70)
34 PRK14966 unknown domain/N5-glu 99.1 2.6E-10 5.7E-15 127.7 11.6 91 565-660 219-311 (423)
35 PF10672 Methyltrans_SAM: S-ad 99.1 7.3E-10 1.6E-14 119.2 14.6 98 562-666 86-191 (286)
36 PF13659 Methyltransf_26: Meth 99.1 3.1E-10 6.6E-15 104.9 9.7 62 602-663 1-64 (117)
37 PF09445 Methyltransf_15: RNA 99.1 2.2E-10 4.7E-15 113.5 8.6 62 603-664 1-63 (163)
38 TIGR01645 half-pint poly-U bin 99.1 2.8E-10 6.2E-15 132.7 9.8 77 165-241 204-285 (612)
39 PLN03120 nucleic acid binding 99.1 5.4E-10 1.2E-14 117.3 9.6 73 165-238 4-78 (260)
40 TIGR03534 RF_mod_PrmC protein- 99.0 2.3E-09 5E-14 112.2 14.4 92 566-660 55-148 (251)
41 KOG0117 Heterogeneous nuclear 99.0 3.4E-10 7.5E-15 123.8 8.1 81 157-237 74-161 (506)
42 TIGR00308 TRM1 tRNA(guanine-26 99.0 3.9E-09 8.5E-14 117.8 15.7 96 569-664 6-110 (374)
43 KOG0122 Translation initiation 99.0 8.8E-10 1.9E-14 112.9 9.5 77 164-240 188-269 (270)
44 TIGR00446 nop2p NOL1/NOP2/sun 99.0 2.7E-09 5.9E-14 113.9 13.3 66 596-661 66-134 (264)
45 TIGR01628 PABP-1234 polyadenyl 99.0 1.1E-09 2.4E-14 128.5 11.0 79 163-241 283-365 (562)
46 PRK01544 bifunctional N5-gluta 99.0 1.2E-09 2.6E-14 126.7 10.3 117 565-702 80-223 (506)
47 PRK14902 16S rRNA methyltransf 99.0 3.2E-09 6.9E-14 121.4 12.9 66 596-661 245-313 (444)
48 PLN02672 methionine S-methyltr 99.0 1.3E-09 2.8E-14 134.1 10.2 119 565-703 83-221 (1082)
49 PRK14901 16S rRNA methyltransf 99.0 1.7E-09 3.6E-14 123.3 10.1 69 593-661 244-315 (434)
50 TIGR01659 sex-lethal sex-letha 99.0 1.7E-09 3.7E-14 119.6 9.8 77 165-241 193-276 (346)
51 TIGR01645 half-pint poly-U bin 99.0 1.1E-09 2.4E-14 127.9 8.5 73 164-236 106-183 (612)
52 PF02475 Met_10: Met-10+ like- 99.0 3.1E-09 6.7E-14 109.0 10.6 106 554-663 56-166 (200)
53 smart00362 RRM_2 RNA recogniti 98.9 3.2E-09 6.9E-14 87.3 8.6 69 167-235 1-72 (72)
54 COG4123 Predicted O-methyltran 98.9 2.2E-09 4.7E-14 112.8 9.1 72 594-665 37-111 (248)
55 PRK09328 N5-glutamine S-adenos 98.9 6.3E-09 1.4E-13 110.7 12.6 92 566-659 75-168 (275)
56 smart00360 RRM RNA recognition 98.9 3.7E-09 8.1E-14 86.5 7.5 66 170-235 1-71 (71)
57 TIGR01642 U2AF_lg U2 snRNP aux 98.9 4.8E-09 1E-13 121.4 10.4 76 164-239 294-374 (509)
58 PTZ00338 dimethyladenosine tra 98.9 1.2E-08 2.7E-13 110.6 12.9 74 587-660 22-96 (294)
59 TIGR01648 hnRNP-R-Q heterogene 98.9 3.5E-09 7.6E-14 123.4 9.1 77 162-238 55-136 (578)
60 TIGR01177 conserved hypothetic 98.9 7.9E-09 1.7E-13 113.7 10.9 70 592-661 173-242 (329)
61 PRK14903 16S rRNA methyltransf 98.9 2.1E-08 4.5E-13 114.3 14.6 66 596-661 232-300 (431)
62 PRK09489 rsmC 16S ribosomal RN 98.9 2.2E-08 4.8E-13 110.8 14.2 88 566-658 164-254 (342)
63 PF13847 Methyltransf_31: Meth 98.9 5.8E-09 1.3E-13 101.6 8.5 61 600-660 2-65 (152)
64 PRK07402 precorrin-6B methylas 98.9 2.7E-08 5.8E-13 101.3 13.6 72 592-663 31-104 (196)
65 PRK15001 SAM-dependent 23S rib 98.9 2.2E-08 4.7E-13 112.0 13.7 89 568-659 198-291 (378)
66 PRK14967 putative methyltransf 98.9 3.5E-08 7.6E-13 102.6 14.2 89 568-660 6-95 (223)
67 KOG0149 Predicted RNA-binding 98.9 2.9E-09 6.3E-14 108.9 5.8 71 166-237 13-88 (247)
68 KOG0107 Alternative splicing f 98.8 5.2E-09 1.1E-13 102.7 7.3 74 165-239 10-84 (195)
69 PLN03121 nucleic acid binding 98.8 8.5E-09 1.8E-13 106.9 9.0 74 164-238 4-79 (243)
70 TIGR01628 PABP-1234 polyadenyl 98.8 7.2E-09 1.6E-13 121.7 9.5 72 167-238 2-78 (562)
71 KOG2904 Predicted methyltransf 98.8 5.1E-09 1.1E-13 109.7 6.9 119 565-702 111-239 (328)
72 TIGR01622 SF-CC1 splicing fact 98.8 8.4E-09 1.8E-13 117.8 9.0 74 165-238 186-264 (457)
73 PRK10901 16S rRNA methyltransf 98.8 3.2E-08 7E-13 112.7 13.4 65 595-660 238-304 (427)
74 COG0724 RNA-binding proteins ( 98.8 1.3E-08 2.7E-13 104.5 9.1 75 165-239 115-194 (306)
75 PRK14904 16S rRNA methyltransf 98.8 2.9E-08 6.3E-13 113.6 12.9 67 595-661 244-313 (445)
76 PF01170 UPF0020: Putative RNA 98.8 7.2E-09 1.6E-13 104.5 7.0 76 587-662 14-101 (179)
77 TIGR01648 hnRNP-R-Q heterogene 98.8 1.2E-08 2.7E-13 118.9 9.5 72 166-241 234-308 (578)
78 PF12847 Methyltransf_18: Meth 98.8 1.9E-08 4.2E-13 92.0 8.8 58 601-658 1-61 (112)
79 TIGR02469 CbiT precorrin-6Y C5 98.8 7.9E-08 1.7E-12 89.0 12.5 72 589-660 7-80 (124)
80 TIGR00138 gidB 16S rRNA methyl 98.8 6.4E-08 1.4E-12 97.8 12.8 61 601-661 42-104 (181)
81 COG2813 RsmC 16S RNA G1207 met 98.8 3E-08 6.4E-13 106.4 10.8 89 567-659 127-218 (300)
82 PRK00377 cbiT cobalt-precorrin 98.8 4.9E-08 1.1E-12 99.6 11.9 78 587-664 26-107 (198)
83 KOG0117 Heterogeneous nuclear 98.8 1.3E-08 2.8E-13 111.7 7.8 79 165-246 258-337 (506)
84 COG2242 CobL Precorrin-6B meth 98.8 3E-08 6.6E-13 99.6 9.8 78 588-665 21-100 (187)
85 TIGR00091 tRNA (guanine-N(7)-) 98.8 8.1E-08 1.8E-12 97.8 13.0 64 601-664 16-81 (194)
86 cd00590 RRM RRM (RNA recogniti 98.8 5.1E-08 1.1E-12 80.5 9.2 69 167-235 1-73 (74)
87 PRK08287 cobalt-precorrin-6Y C 98.8 1.3E-07 2.8E-12 95.5 14.0 73 587-659 17-91 (187)
88 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.7 2.9E-08 6.2E-13 114.7 10.3 77 163-240 273-351 (481)
89 PRK00121 trmB tRNA (guanine-N( 98.7 1.1E-07 2.5E-12 97.5 13.6 62 601-662 40-103 (202)
90 TIGR01622 SF-CC1 splicing fact 98.7 2.9E-08 6.2E-13 113.5 10.1 76 162-238 86-166 (457)
91 KOG0127 Nucleolar protein fibr 98.7 2.5E-08 5.4E-13 111.6 9.1 77 165-241 292-379 (678)
92 COG2520 Predicted methyltransf 98.7 4.1E-08 8.9E-13 107.7 10.4 95 566-665 157-254 (341)
93 KOG0108 mRNA cleavage and poly 98.7 2.7E-08 5.9E-13 112.2 8.9 75 166-240 19-98 (435)
94 PRK13944 protein-L-isoaspartat 98.7 7.2E-08 1.6E-12 99.1 11.3 76 586-661 57-136 (205)
95 KOG3420 Predicted RNA methylas 98.7 2.2E-08 4.8E-13 96.0 6.6 82 579-661 26-108 (185)
96 PRK00107 gidB 16S rRNA methylt 98.7 1.3E-07 2.8E-12 96.2 12.5 61 601-661 45-107 (187)
97 TIGR01642 U2AF_lg U2 snRNP aux 98.7 2.7E-08 6E-13 115.1 8.5 73 164-237 174-257 (509)
98 TIGR00537 hemK_rel_arch HemK-r 98.7 1.2E-07 2.6E-12 95.0 11.7 60 600-660 18-77 (179)
99 smart00650 rADc Ribosomal RNA 98.7 9.7E-08 2.1E-12 95.0 10.5 69 591-661 3-71 (169)
100 smart00361 RRM_1 RNA recogniti 98.7 5.1E-08 1.1E-12 83.1 6.9 56 179-234 2-69 (70)
101 PRK00312 pcm protein-L-isoaspa 98.6 1.1E-07 2.4E-12 97.8 10.2 72 589-660 66-137 (212)
102 PF13893 RRM_5: RNA recognitio 98.6 1E-07 2.2E-12 77.4 7.6 55 182-237 1-56 (56)
103 KOG0148 Apoptosis-promoting RN 98.6 4.9E-08 1.1E-12 101.5 7.1 77 166-242 63-144 (321)
104 KOG4207 Predicted splicing fac 98.6 3.5E-08 7.5E-13 99.1 5.7 73 166-238 14-91 (256)
105 PRK00274 ksgA 16S ribosomal RN 98.6 1.5E-07 3.3E-12 101.0 11.0 70 589-661 30-99 (272)
106 PRK12335 tellurite resistance 98.6 9E-08 2E-12 103.4 8.8 90 569-660 89-178 (287)
107 KOG0105 Alternative splicing f 98.6 4.4E-08 9.5E-13 96.8 5.6 74 165-238 6-81 (241)
108 PF06325 PrmA: Ribosomal prote 98.6 1.7E-07 3.6E-12 101.6 10.6 82 568-650 129-211 (295)
109 COG2226 UbiE Methylase involve 98.6 1.1E-07 2.3E-12 99.9 8.8 69 593-661 43-113 (238)
110 PRK11036 putative S-adenosyl-L 98.6 3.5E-07 7.6E-12 97.0 12.7 69 593-662 37-106 (255)
111 PF00642 zf-CCCH: Zinc finger 98.6 7.2E-09 1.6E-13 72.4 -0.1 27 81-107 1-27 (27)
112 PRK13943 protein-L-isoaspartat 98.6 4E-07 8.6E-12 100.0 13.2 75 588-662 67-144 (322)
113 PRK11207 tellurite resistance 98.6 1.4E-07 3.1E-12 96.3 9.1 65 597-661 26-90 (197)
114 KOG0145 RNA-binding protein EL 98.6 1.2E-07 2.6E-12 97.9 8.4 80 164-243 40-124 (360)
115 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.6 1.3E-07 2.8E-12 109.4 9.6 79 164-242 95-176 (481)
116 TIGR02021 BchM-ChlM magnesium 98.6 2.5E-07 5.3E-12 95.7 10.8 78 584-661 36-116 (219)
117 PRK13942 protein-L-isoaspartat 98.6 2.3E-07 5E-12 96.0 9.8 75 587-661 62-139 (212)
118 KOG0147 Transcriptional coacti 98.6 6.6E-08 1.4E-12 108.8 6.1 82 162-243 275-361 (549)
119 KOG2730 Methylase [General fun 98.6 2.1E-07 4.6E-12 95.0 9.0 93 571-666 66-160 (263)
120 KOG0131 Splicing factor 3b, su 98.6 1.2E-07 2.5E-12 93.8 6.7 76 163-238 7-87 (203)
121 TIGR00563 rsmB ribosomal RNA s 98.6 4.2E-07 9.1E-12 103.6 12.3 66 593-658 230-298 (426)
122 PF01135 PCMT: Protein-L-isoas 98.6 2E-07 4.4E-12 96.3 8.9 74 587-660 58-134 (209)
123 KOG0127 Nucleolar protein fibr 98.5 1.4E-07 3E-12 105.8 7.7 76 165-240 117-196 (678)
124 TIGR00406 prmA ribosomal prote 98.5 7.9E-07 1.7E-11 96.2 13.4 89 568-657 127-217 (288)
125 PRK14968 putative methyltransf 98.5 4.2E-07 9.2E-12 90.7 10.4 61 600-660 22-84 (188)
126 PF01209 Ubie_methyltran: ubiE 98.5 1.9E-07 4.2E-12 98.1 7.8 69 593-661 39-110 (233)
127 KOG0111 Cyclophilin-type pepti 98.5 6.3E-08 1.4E-12 97.9 3.8 76 166-241 11-91 (298)
128 KOG0144 RNA-binding protein CU 98.5 1.1E-07 2.4E-12 104.1 5.7 79 164-242 123-208 (510)
129 PLN02781 Probable caffeoyl-CoA 98.5 1.3E-06 2.9E-11 91.8 13.5 83 580-666 51-137 (234)
130 COG2264 PrmA Ribosomal protein 98.5 3.7E-07 8E-12 98.5 9.4 83 567-650 129-212 (300)
131 KOG0110 RNA-binding protein (R 98.5 2.1E-07 4.6E-12 107.4 7.9 74 165-238 515-596 (725)
132 COG0116 Predicted N6-adenine-s 98.5 5E-07 1.1E-11 100.0 9.7 81 581-661 171-293 (381)
133 KOG0145 RNA-binding protein EL 98.5 5.7E-07 1.2E-11 93.0 9.3 76 162-237 275-355 (360)
134 KOG0148 Apoptosis-promoting RN 98.5 4.6E-07 9.9E-12 94.4 8.4 78 165-244 164-242 (321)
135 PRK14121 tRNA (guanine-N(7)-)- 98.5 1.7E-06 3.6E-11 96.9 13.4 64 600-663 121-186 (390)
136 KOG0123 Polyadenylate-binding 98.4 3.5E-07 7.6E-12 102.1 8.0 74 168-242 79-155 (369)
137 TIGR02752 MenG_heptapren 2-hep 98.4 7.5E-07 1.6E-11 92.5 9.8 69 593-661 37-108 (231)
138 PLN02244 tocopherol O-methyltr 98.4 7.4E-07 1.6E-11 98.7 10.2 79 583-661 95-180 (340)
139 PRK05134 bifunctional 3-demeth 98.4 3.3E-06 7.1E-11 87.9 14.1 88 574-662 21-108 (233)
140 TIGR00477 tehB tellurite resis 98.4 8.2E-07 1.8E-11 90.6 8.8 65 595-660 24-88 (195)
141 KOG0144 RNA-binding protein CU 98.4 7.7E-07 1.7E-11 97.7 8.4 75 163-237 32-114 (510)
142 KOG0114 Predicted RNA-binding 98.4 1.1E-06 2.3E-11 79.8 7.9 74 167-240 20-95 (124)
143 COG1041 Predicted DNA modifica 98.4 4.5E-07 9.7E-12 99.2 6.4 73 589-661 185-258 (347)
144 KOG4212 RNA-binding protein hn 98.4 6.8E-07 1.5E-11 98.0 7.6 73 165-237 43-121 (608)
145 PRK11727 23S rRNA mA1618 methy 98.4 2.3E-06 5E-11 93.8 11.9 63 601-663 114-181 (321)
146 PHA03412 putative methyltransf 98.4 1.7E-06 3.8E-11 90.5 10.1 54 602-660 50-108 (241)
147 PRK14896 ksgA 16S ribosomal RN 98.4 9.5E-07 2.1E-11 94.1 8.4 70 590-661 18-87 (258)
148 TIGR00755 ksgA dimethyladenosi 98.4 2E-06 4.2E-11 91.3 10.7 71 589-661 17-87 (253)
149 PF02353 CMAS: Mycolic acid cy 98.4 1.3E-06 2.7E-11 94.1 9.2 98 566-663 24-126 (273)
150 KOG0146 RNA-binding protein ET 98.4 4.1E-07 8.9E-12 94.4 5.2 80 162-241 282-366 (371)
151 COG2518 Pcm Protein-L-isoaspar 98.3 1.7E-06 3.6E-11 88.9 9.3 74 589-662 60-133 (209)
152 COG2227 UbiG 2-polyprenyl-3-me 98.3 6.5E-07 1.4E-11 93.2 6.3 63 601-664 59-121 (243)
153 KOG0126 Predicted RNA-binding 98.3 6.2E-08 1.3E-12 95.6 -1.3 73 165-237 35-112 (219)
154 PLN02585 magnesium protoporphy 98.3 1.7E-06 3.6E-11 94.9 9.7 61 601-661 144-209 (315)
155 PRK11933 yebU rRNA (cytosine-C 98.3 5.3E-06 1.2E-10 95.4 13.8 64 598-661 110-176 (470)
156 PHA03411 putative methyltransf 98.3 1.9E-06 4E-11 92.2 9.2 56 601-661 64-121 (279)
157 PLN02476 O-methyltransferase 98.3 7.4E-06 1.6E-10 88.1 13.9 84 579-666 100-187 (278)
158 PLN02396 hexaprenyldihydroxybe 98.3 2.4E-06 5.3E-11 93.9 10.4 62 600-661 130-192 (322)
159 PF13649 Methyltransf_25: Meth 98.3 1E-06 2.2E-11 79.9 5.8 56 605-661 1-61 (101)
160 PRK00517 prmA ribosomal protei 98.3 2.9E-06 6.3E-11 89.9 10.2 87 569-657 88-177 (250)
161 COG2230 Cfa Cyclopropane fatty 98.3 2.7E-06 5.9E-11 91.2 9.9 78 587-664 58-137 (283)
162 PRK10742 putative methyltransf 98.3 3.8E-06 8.3E-11 88.4 10.5 73 592-664 77-160 (250)
163 KOG0121 Nuclear cap-binding pr 98.3 1.6E-06 3.5E-11 81.4 6.6 72 163-235 34-111 (153)
164 PRK15451 tRNA cmo(5)U34 methyl 98.3 3.2E-06 6.9E-11 89.4 9.8 62 600-661 55-121 (247)
165 PRK11783 rlmL 23S rRNA m(2)G24 98.3 4.3E-06 9.4E-11 101.0 11.7 75 587-661 175-295 (702)
166 KOG0109 RNA-binding protein LA 98.3 9.3E-07 2E-11 93.0 5.1 71 166-240 3-74 (346)
167 PLN02233 ubiquinone biosynthes 98.3 3.2E-06 7E-11 90.2 9.3 69 593-661 65-139 (261)
168 PRK04457 spermidine synthase; 98.2 2.1E-05 4.6E-10 84.1 15.3 65 601-665 66-133 (262)
169 PRK07580 Mg-protoporphyrin IX 98.2 4.4E-06 9.5E-11 86.4 9.5 60 600-659 62-122 (230)
170 PRK04266 fibrillarin; Provisio 98.2 4.6E-06 9.9E-11 87.4 9.4 72 586-660 58-131 (226)
171 TIGR01983 UbiG ubiquinone bios 98.2 7.1E-06 1.5E-10 84.6 10.2 89 574-662 14-106 (224)
172 cd02440 AdoMet_MTases S-adenos 98.2 1.2E-05 2.6E-10 69.8 9.9 59 604-662 1-60 (107)
173 KOG0123 Polyadenylate-binding 98.2 1.9E-06 4.2E-11 96.2 6.0 80 163-242 268-351 (369)
174 PF03848 TehB: Tellurite resis 98.1 9.2E-06 2E-10 82.9 9.5 68 593-661 22-89 (192)
175 PRK14103 trans-aconitate 2-met 98.1 4.3E-06 9.4E-11 88.6 7.3 64 591-661 19-84 (255)
176 KOG0153 Predicted RNA-binding 98.1 1.2E-05 2.7E-10 86.5 10.4 141 76-239 151-302 (377)
177 TIGR00740 methyltransferase, p 98.1 1.2E-05 2.5E-10 84.4 10.0 62 600-661 52-118 (239)
178 PRK11873 arsM arsenite S-adeno 98.1 7.7E-06 1.7E-10 87.4 8.7 65 597-661 73-140 (272)
179 KOG0124 Polypyrimidine tract-b 98.1 2.4E-06 5.2E-11 91.9 4.6 70 166-235 114-188 (544)
180 KOG0113 U1 small nuclear ribon 98.1 2.2E-05 4.7E-10 83.2 11.5 73 165-237 100-178 (335)
181 PRK01683 trans-aconitate 2-met 98.1 8.1E-06 1.8E-10 86.4 8.1 68 589-661 19-88 (258)
182 KOG1271 Methyltransferases [Ge 98.1 6.1E-06 1.3E-10 82.4 6.4 78 583-660 45-129 (227)
183 KOG1270 Methyltransferases [Co 98.1 5E-06 1.1E-10 87.4 6.0 63 601-663 89-157 (282)
184 PRK15068 tRNA mo(5)U34 methylt 98.1 1.5E-05 3.3E-10 87.7 10.1 73 589-661 110-184 (322)
185 KOG4208 Nucleolar RNA-binding 98.0 8.6E-06 1.9E-10 82.4 6.9 73 167-239 51-129 (214)
186 KOG0131 Splicing factor 3b, su 98.0 8.4E-06 1.8E-10 81.0 6.5 77 162-238 93-175 (203)
187 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.0 3.9E-05 8.4E-10 83.1 12.3 69 597-665 81-152 (283)
188 PRK10258 biotin biosynthesis p 98.0 1.9E-05 4.2E-10 83.2 8.7 65 591-660 32-96 (251)
189 TIGR03587 Pse_Me-ase pseudamin 98.0 1.3E-05 2.8E-10 82.7 7.1 56 600-660 42-99 (204)
190 KOG1677 CCCH-type Zn-finger pr 98.0 3.2E-06 6.9E-11 93.1 2.5 42 74-115 168-209 (332)
191 TIGR03840 TMPT_Se_Te thiopurin 98.0 1.9E-05 4E-10 82.1 8.0 62 600-661 33-106 (213)
192 PF01596 Methyltransf_3: O-met 98.0 4.6E-05 9.9E-10 78.8 10.7 83 581-667 29-115 (205)
193 PRK00050 16S rRNA m(4)C1402 me 98.0 2.7E-05 5.9E-10 84.6 9.3 78 587-666 5-85 (296)
194 PRK00811 spermidine synthase; 97.9 8E-05 1.7E-09 80.6 12.4 64 601-664 76-146 (283)
195 PRK11188 rrmJ 23S rRNA methylt 97.9 8.8E-05 1.9E-09 76.7 12.0 52 599-661 49-103 (209)
196 TIGR00438 rrmJ cell division p 97.9 0.00011 2.4E-09 74.2 12.5 61 589-660 20-83 (188)
197 KOG4206 Spliceosomal protein s 97.9 2.4E-05 5.1E-10 80.3 7.5 78 167-244 11-94 (221)
198 COG4076 Predicted RNA methylas 97.9 1.4E-05 3.1E-10 80.0 5.7 58 603-660 34-91 (252)
199 PRK03612 spermidine synthase; 97.9 5.1E-05 1.1E-09 88.8 11.1 65 600-664 296-369 (521)
200 COG2521 Predicted archaeal met 97.9 6.1E-06 1.3E-10 85.3 3.0 100 557-665 99-201 (287)
201 PRK11705 cyclopropane fatty ac 97.9 4.6E-05 1E-09 85.9 10.2 74 585-661 151-225 (383)
202 TIGR00452 methyltransferase, p 97.9 6E-05 1.3E-09 82.7 10.6 77 585-661 105-183 (314)
203 PRK00216 ubiE ubiquinone/menaq 97.9 4.1E-05 8.8E-10 79.2 8.9 69 593-661 43-115 (239)
204 PTZ00098 phosphoethanolamine N 97.9 3.1E-05 6.8E-10 82.8 8.2 67 592-660 43-110 (263)
205 COG0144 Sun tRNA and rRNA cyto 97.9 4.5E-05 9.7E-10 85.1 9.6 67 595-661 150-220 (355)
206 PRK08317 hypothetical protein; 97.9 5.7E-05 1.2E-09 77.7 9.7 71 589-660 7-80 (241)
207 PLN03075 nicotianamine synthas 97.9 0.00015 3.2E-09 78.7 12.9 61 601-661 123-189 (296)
208 PF05401 NodS: Nodulation prot 97.9 3.7E-05 8E-10 78.3 7.7 65 597-663 39-103 (201)
209 PLN02336 phosphoethanolamine N 97.9 5.1E-05 1.1E-09 87.6 10.0 66 593-660 29-94 (475)
210 PF07021 MetW: Methionine bios 97.9 3.5E-05 7.6E-10 78.3 7.4 69 591-668 5-74 (193)
211 COG0030 KsgA Dimethyladenosine 97.8 0.00015 3.3E-09 77.2 12.5 72 588-661 17-88 (259)
212 COG2519 GCD14 tRNA(1-methylade 97.8 5.3E-05 1.1E-09 79.8 8.8 72 591-662 84-159 (256)
213 PLN02366 spermidine synthase 97.8 0.00019 4.2E-09 78.6 13.4 65 600-664 90-160 (308)
214 KOG1540 Ubiquinone biosynthesi 97.8 4.7E-05 1E-09 79.8 8.1 69 593-661 92-171 (296)
215 TIGR02716 C20_methyl_CrtF C-20 97.8 4.9E-05 1.1E-09 82.7 8.8 69 591-660 139-210 (306)
216 PRK01581 speE spermidine synth 97.8 0.0002 4.4E-09 79.6 13.5 64 601-664 150-222 (374)
217 PLN02336 phosphoethanolamine N 97.8 5.2E-05 1.1E-09 87.5 9.2 65 595-660 260-325 (475)
218 PRK13255 thiopurine S-methyltr 97.8 4.9E-05 1.1E-09 79.2 8.1 59 600-661 36-109 (218)
219 TIGR03438 probable methyltrans 97.8 6E-05 1.3E-09 82.2 9.1 62 601-662 63-128 (301)
220 TIGR00417 speE spermidine synt 97.8 0.00024 5.3E-09 76.2 13.5 64 601-664 72-141 (270)
221 PRK05785 hypothetical protein; 97.8 6.2E-05 1.3E-09 78.8 8.7 52 601-660 51-103 (226)
222 smart00356 ZnF_C3H1 zinc finge 97.8 1.1E-05 2.3E-10 55.9 1.9 27 80-107 1-27 (27)
223 KOG1457 RNA binding protein (c 97.8 8E-05 1.7E-09 76.1 8.5 79 167-245 36-123 (284)
224 PF08704 GCD14: tRNA methyltra 97.8 8.6E-05 1.9E-09 78.8 9.2 69 591-659 30-102 (247)
225 PRK04148 hypothetical protein; 97.8 6.6E-05 1.4E-09 72.3 7.5 69 589-664 4-73 (134)
226 PF04059 RRM_2: RNA recognitio 97.8 0.00011 2.5E-09 67.0 8.6 63 167-229 3-72 (97)
227 PF02390 Methyltransf_4: Putat 97.8 7.4E-05 1.6E-09 76.6 8.3 64 603-666 19-84 (195)
228 KOG0109 RNA-binding protein LA 97.8 2.8E-05 6.1E-10 82.0 4.9 74 163-240 76-150 (346)
229 PTZ00146 fibrillarin; Provisio 97.7 0.00011 2.4E-09 79.6 9.6 64 595-660 126-192 (293)
230 KOG0130 RNA-binding protein RB 97.7 5E-05 1.1E-09 72.1 6.1 75 164-238 71-150 (170)
231 COG4106 Tam Trans-aconitate me 97.7 5.9E-05 1.3E-09 77.4 7.0 65 594-663 23-89 (257)
232 PF08241 Methyltransf_11: Meth 97.7 2.9E-05 6.3E-10 67.9 4.1 53 606-661 1-54 (95)
233 KOG1499 Protein arginine N-met 97.7 5.8E-05 1.2E-09 82.6 7.1 62 599-661 58-121 (346)
234 KOG4205 RNA-binding protein mu 97.7 2.3E-05 5.1E-10 85.3 3.7 80 164-244 5-89 (311)
235 KOG4205 RNA-binding protein mu 97.7 2.8E-05 6.1E-10 84.7 4.3 78 165-243 97-179 (311)
236 PRK11088 rrmA 23S rRNA methylt 97.7 0.0001 2.2E-09 79.1 8.3 68 587-660 72-144 (272)
237 PRK06202 hypothetical protein; 97.7 6.6E-05 1.4E-09 78.4 6.5 58 600-660 59-122 (232)
238 PLN02490 MPBQ/MSBQ methyltrans 97.7 0.00013 2.9E-09 80.8 9.1 72 587-661 98-172 (340)
239 KOG0533 RRM motif-containing p 97.7 0.00014 2.9E-09 76.7 8.3 78 162-239 80-161 (243)
240 smart00828 PKS_MT Methyltransf 97.7 0.00012 2.5E-09 75.8 7.8 57 604-660 2-61 (224)
241 TIGR01444 fkbM_fam methyltrans 97.7 0.00011 2.3E-09 70.4 7.0 57 604-660 1-59 (143)
242 KOG0146 RNA-binding protein ET 97.6 9E-05 2E-09 77.3 6.7 74 165-238 19-99 (371)
243 PF02384 N6_Mtase: N-6 DNA Met 97.6 9.5E-05 2.1E-09 80.5 7.2 75 581-659 30-115 (311)
244 PRK06922 hypothetical protein; 97.6 0.00015 3.2E-09 85.7 9.1 61 600-661 417-479 (677)
245 KOG4212 RNA-binding protein hn 97.6 9.6E-05 2.1E-09 81.5 6.9 73 162-236 533-607 (608)
246 KOG4661 Hsp27-ERE-TATA-binding 97.6 0.00015 3.1E-09 82.1 8.1 74 165-238 405-483 (940)
247 PLN02589 caffeoyl-CoA O-methyl 97.6 0.0016 3.5E-08 69.2 15.7 84 579-666 61-148 (247)
248 TIGR01934 MenG_MenH_UbiE ubiqu 97.6 0.00023 4.9E-09 72.8 8.6 67 593-661 31-100 (223)
249 KOG0110 RNA-binding protein (R 97.6 6.3E-05 1.4E-09 87.4 4.8 74 165-238 613-691 (725)
250 KOG0226 RNA-binding proteins [ 97.6 8.2E-05 1.8E-09 77.4 5.1 72 164-235 189-265 (290)
251 TIGR02987 met_A_Alw26 type II 97.6 0.00025 5.3E-09 83.2 9.6 67 581-647 8-87 (524)
252 TIGR00478 tly hemolysin TlyA f 97.5 0.00014 3.1E-09 76.3 6.7 60 584-643 58-119 (228)
253 TIGR02072 BioC biotin biosynth 97.5 0.00032 7E-09 72.3 8.7 57 601-661 34-92 (240)
254 PF10294 Methyltransf_16: Puta 97.5 0.00035 7.6E-09 70.2 8.5 76 585-661 23-109 (173)
255 KOG1677 CCCH-type Zn-finger pr 97.5 4.2E-05 9.1E-10 84.3 1.9 41 74-114 123-164 (332)
256 COG4122 Predicted O-methyltran 97.5 0.0017 3.8E-08 67.7 13.2 64 601-664 59-127 (219)
257 KOG3191 Predicted N6-DNA-methy 97.4 0.00063 1.4E-08 68.3 9.4 82 602-703 44-128 (209)
258 KOG0106 Alternative splicing f 97.4 9.9E-05 2.2E-09 76.2 3.8 71 166-239 2-72 (216)
259 TIGR02081 metW methionine bios 97.4 0.00034 7.3E-09 71.1 7.2 55 601-662 13-68 (194)
260 COG0220 Predicted S-adenosylme 97.4 0.00046 1E-08 72.4 8.2 65 603-667 50-116 (227)
261 PF00398 RrnaAD: Ribosomal RNA 97.4 0.00032 7E-09 75.0 7.1 72 588-661 17-88 (262)
262 KOG1541 Predicted protein carb 97.3 0.00025 5.5E-09 73.0 5.2 53 589-641 36-90 (270)
263 KOG0116 RasGAP SH3 binding pro 97.3 0.00036 7.8E-09 78.9 6.7 78 165-243 288-370 (419)
264 PF13679 Methyltransf_32: Meth 97.3 0.00087 1.9E-08 64.9 8.5 61 600-660 24-93 (141)
265 PF08242 Methyltransf_12: Meth 97.3 2.1E-05 4.6E-10 70.7 -2.8 56 606-661 1-58 (99)
266 PF13489 Methyltransf_23: Meth 97.3 0.00063 1.4E-08 65.7 7.0 40 599-638 20-59 (161)
267 KOG1227 Putative methyltransfe 97.2 0.00021 4.5E-09 76.5 3.5 101 554-660 150-256 (351)
268 PF05185 PRMT5: PRMT5 arginine 97.2 0.00092 2E-08 76.9 9.0 60 602-661 187-253 (448)
269 KOG0132 RNA polymerase II C-te 97.2 0.0006 1.3E-08 80.1 7.4 71 166-238 422-493 (894)
270 smart00138 MeTrc Methyltransfe 97.2 0.0007 1.5E-08 72.6 7.5 71 572-643 67-152 (264)
271 COG4976 Predicted methyltransf 97.2 0.00023 4.9E-09 73.8 3.5 43 600-642 124-166 (287)
272 KOG0124 Polypyrimidine tract-b 97.2 0.0005 1.1E-08 74.5 6.1 73 166-238 211-288 (544)
273 KOG4211 Splicing factor hnRNP- 97.2 0.00091 2E-08 75.4 7.8 77 163-240 8-86 (510)
274 PRK13256 thiopurine S-methyltr 97.1 0.0009 1.9E-08 70.2 7.0 62 600-661 42-115 (226)
275 KOG0151 Predicted splicing reg 97.1 0.00084 1.8E-08 78.2 6.8 76 165-240 174-257 (877)
276 KOG2078 tRNA modification enzy 97.1 0.00056 1.2E-08 76.3 5.2 95 565-663 217-313 (495)
277 KOG1500 Protein arginine N-met 97.1 0.001 2.3E-08 72.0 7.1 68 593-661 169-238 (517)
278 COG5063 CTH1 CCCH-type Zn-fing 97.0 0.0003 6.5E-09 74.8 2.4 46 72-117 263-308 (351)
279 PF05724 TPMT: Thiopurine S-me 97.0 0.0011 2.3E-08 69.4 6.4 67 597-663 33-111 (218)
280 PLN02823 spermine synthase 97.0 0.0065 1.4E-07 67.5 12.2 64 601-664 103-172 (336)
281 KOG1548 Transcription elongati 96.9 0.0016 3.4E-08 70.7 6.3 73 166-238 135-219 (382)
282 KOG0820 Ribosomal RNA adenine 96.9 0.0032 6.9E-08 67.0 8.0 72 590-661 47-119 (315)
283 PF01555 N6_N4_Mtase: DNA meth 96.8 0.0026 5.7E-08 64.9 7.2 42 600-641 190-231 (231)
284 PF08123 DOT1: Histone methyla 96.8 0.003 6.5E-08 65.4 7.5 71 590-660 31-112 (205)
285 COG3897 Predicted methyltransf 96.8 0.0011 2.4E-08 67.4 3.6 83 576-659 54-137 (218)
286 KOG1663 O-methyltransferase [S 96.5 0.016 3.4E-07 60.6 10.3 68 601-668 73-144 (237)
287 KOG0120 Splicing factor U2AF, 96.5 0.0018 4E-08 74.3 3.8 79 162-240 286-369 (500)
288 PRK11524 putative methyltransf 96.5 0.0065 1.4E-07 65.8 7.7 57 587-644 195-251 (284)
289 KOG2202 U2 snRNP splicing fact 96.5 0.0017 3.7E-08 68.0 2.9 115 85-237 17-145 (260)
290 PRK01544 bifunctional N5-gluta 96.5 0.024 5.1E-07 66.5 12.5 64 601-664 347-412 (506)
291 KOG0415 Predicted peptidyl pro 96.4 0.01 2.2E-07 64.6 8.5 78 162-239 236-318 (479)
292 KOG2899 Predicted methyltransf 96.4 0.0037 7.9E-08 65.5 4.8 44 601-644 58-103 (288)
293 KOG2185 Predicted RNA-processi 96.4 0.0018 4E-08 71.3 2.6 31 84-115 141-175 (486)
294 KOG0106 Alternative splicing f 96.4 0.002 4.3E-08 66.8 2.8 68 165-235 99-166 (216)
295 TIGR00006 S-adenosyl-methyltra 96.4 0.021 4.5E-07 62.6 10.5 78 587-665 6-85 (305)
296 KOG4209 Splicing factor RNPS1, 96.4 0.004 8.7E-08 65.6 4.9 72 165-237 101-177 (231)
297 PF11608 Limkain-b1: Limkain b 96.3 0.018 4E-07 51.0 7.7 67 167-237 4-74 (90)
298 KOG3010 Methyltransferase [Gen 96.3 0.0043 9.2E-08 65.1 4.3 43 600-642 31-74 (261)
299 PF02527 GidB: rRNA small subu 96.2 0.031 6.7E-07 57.0 10.3 57 604-660 51-109 (184)
300 PF11599 AviRa: RRNA methyltra 96.2 0.015 3.3E-07 60.0 8.0 72 575-646 25-100 (246)
301 PF02005 TRM: N2,N2-dimethylgu 96.2 0.0088 1.9E-07 67.4 6.8 88 575-663 18-116 (377)
302 PF08003 Methyltransf_9: Prote 96.2 0.017 3.8E-07 62.8 8.7 60 590-649 104-164 (315)
303 cd00315 Cyt_C5_DNA_methylase C 96.2 0.0052 1.1E-07 66.3 4.7 52 604-661 2-54 (275)
304 KOG2915 tRNA(1-methyladenosine 96.1 0.02 4.4E-07 61.0 8.4 69 591-659 95-167 (314)
305 COG0357 GidB Predicted S-adeno 96.1 0.017 3.6E-07 60.3 7.6 62 602-663 68-131 (215)
306 PRK13699 putative methylase; P 96.1 0.018 3.9E-07 60.6 7.9 56 589-645 152-207 (227)
307 KOG1661 Protein-L-isoaspartate 96.0 0.0084 1.8E-07 61.7 4.8 74 587-660 66-155 (237)
308 KOG4300 Predicted methyltransf 95.9 0.015 3.2E-07 59.9 6.1 76 586-661 61-138 (252)
309 KOG4454 RNA binding protein (R 95.8 0.0044 9.6E-08 63.6 2.1 69 166-235 10-82 (267)
310 KOG1457 RNA binding protein (c 95.8 0.0092 2E-07 61.4 4.2 62 166-227 211-273 (284)
311 KOG4211 Splicing factor hnRNP- 95.8 0.015 3.2E-07 65.9 6.0 71 166-237 104-179 (510)
312 PF01564 Spermine_synth: Sperm 95.7 0.058 1.3E-06 57.4 9.9 65 601-665 76-146 (246)
313 PF04816 DUF633: Family of unk 95.7 0.033 7.2E-07 57.7 7.7 60 605-664 1-63 (205)
314 PF03291 Pox_MCEL: mRNA cappin 95.6 0.02 4.4E-07 63.5 6.4 60 601-660 62-132 (331)
315 COG1867 TRM1 N2,N2-dimethylgua 95.6 0.041 8.8E-07 61.1 8.4 82 580-665 35-118 (380)
316 KOG4849 mRNA cleavage factor I 95.5 0.012 2.7E-07 63.8 4.0 70 165-234 80-156 (498)
317 KOG1122 tRNA and rRNA cytosine 95.5 0.021 4.5E-07 64.2 5.9 65 596-660 236-303 (460)
318 COG0421 SpeE Spermidine syntha 95.4 0.18 4E-06 54.8 12.6 63 603-665 78-146 (282)
319 PF05971 Methyltransf_10: Prot 95.3 0.11 2.4E-06 56.8 10.4 89 568-657 64-162 (299)
320 PF12147 Methyltransf_20: Puta 95.3 0.079 1.7E-06 57.4 9.0 62 600-661 134-200 (311)
321 KOG4307 RNA binding protein RB 95.0 0.04 8.8E-07 64.5 6.5 74 162-235 863-942 (944)
322 PF00145 DNA_methylase: C-5 cy 95.0 0.063 1.4E-06 58.1 7.8 54 604-664 2-56 (335)
323 COG3963 Phospholipid N-methylt 95.0 0.078 1.7E-06 53.1 7.4 75 582-665 33-110 (194)
324 PF00891 Methyltransf_2: O-met 94.8 0.063 1.4E-06 56.3 6.7 65 592-663 91-157 (241)
325 KOG1995 Conserved Zn-finger pr 94.7 0.048 1E-06 59.9 5.7 78 165-242 66-156 (351)
326 PHA01634 hypothetical protein 94.7 0.064 1.4E-06 51.3 5.6 48 601-648 28-76 (156)
327 KOG2671 Putative RNA methylase 94.7 0.02 4.3E-07 62.8 2.6 44 595-638 202-245 (421)
328 PF08777 RRM_3: RNA binding mo 94.6 0.096 2.1E-06 48.6 6.7 57 167-225 3-60 (105)
329 KOG1365 RNA-binding protein Fu 94.6 0.036 7.7E-07 61.1 4.3 70 168-237 283-359 (508)
330 PF01728 FtsJ: FtsJ-like methy 94.6 0.039 8.4E-07 55.3 4.3 65 585-660 5-74 (181)
331 KOG1548 Transcription elongati 94.4 0.095 2.1E-06 57.3 7.0 73 165-237 265-349 (382)
332 PF04445 SAM_MT: Putative SAM- 94.3 0.066 1.4E-06 56.5 5.5 71 593-663 65-146 (234)
333 COG5175 MOT2 Transcriptional r 94.2 0.094 2E-06 56.9 6.3 71 168-238 117-201 (480)
334 PF14608 zf-CCCH_2: Zinc finge 94.1 0.03 6.5E-07 36.0 1.5 19 85-106 1-19 (19)
335 TIGR03439 methyl_EasF probable 94.0 0.32 6.8E-06 53.9 10.3 87 577-665 52-148 (319)
336 COG5063 CTH1 CCCH-type Zn-fing 93.9 0.028 6E-07 60.3 1.6 38 76-113 221-266 (351)
337 KOG4660 Protein Mei2, essentia 93.8 0.059 1.3E-06 62.0 4.2 66 167-233 77-143 (549)
338 PF01861 DUF43: Protein of unk 93.8 0.56 1.2E-05 49.7 11.1 62 601-664 44-107 (243)
339 PRK11760 putative 23S rRNA C24 93.7 0.15 3.2E-06 56.6 6.9 73 583-662 186-265 (357)
340 KOG4058 Uncharacterized conser 93.5 0.094 2E-06 51.4 4.4 77 580-660 55-133 (199)
341 PF05219 DREV: DREV methyltran 93.4 0.2 4.2E-06 53.6 7.0 61 581-641 73-134 (265)
342 KOG2361 Predicted methyltransf 93.3 0.059 1.3E-06 56.8 2.9 87 567-658 39-131 (264)
343 KOG3152 TBP-binding protein, a 93.3 0.059 1.3E-06 56.8 2.9 64 168-231 77-157 (278)
344 PF09243 Rsm22: Mitochondrial 93.2 0.17 3.8E-06 54.6 6.5 61 584-644 16-79 (274)
345 KOG2360 Proliferation-associat 93.2 0.18 3.9E-06 56.4 6.5 66 596-661 208-276 (413)
346 COG0275 Predicted S-adenosylme 93.1 0.56 1.2E-05 51.2 10.0 79 587-666 9-90 (314)
347 KOG1501 Arginine N-methyltrans 93.0 0.22 4.7E-06 56.3 6.8 54 603-656 68-123 (636)
348 KOG2193 IGF-II mRNA-binding pr 93.0 0.09 1.9E-06 58.6 3.8 74 167-241 3-77 (584)
349 KOG2416 Acinus (induces apopto 92.5 0.12 2.6E-06 59.8 4.2 72 166-239 445-521 (718)
350 TIGR00675 dcm DNA-methyltransf 92.5 0.25 5.5E-06 54.4 6.6 52 605-662 1-53 (315)
351 PF07091 FmrO: Ribosomal RNA m 92.2 0.5 1.1E-05 50.3 8.0 70 586-658 92-163 (251)
352 KOG2314 Translation initiation 92.2 0.22 4.7E-06 57.5 5.6 68 168-236 61-140 (698)
353 COG4262 Predicted spermidine s 92.0 0.83 1.8E-05 50.9 9.6 65 601-665 289-362 (508)
354 COG0500 SmtA SAM-dependent met 91.7 0.54 1.2E-05 42.0 6.7 55 605-660 52-109 (257)
355 KOG4210 Nuclear localization s 91.6 0.16 3.4E-06 55.4 3.6 78 165-243 184-267 (285)
356 KOG3115 Methyltransferase-like 91.5 0.22 4.9E-06 51.3 4.4 67 601-667 60-135 (249)
357 KOG4307 RNA binding protein RB 91.4 0.22 4.9E-06 58.6 4.8 67 167-234 4-71 (944)
358 PF01795 Methyltransf_5: MraW 91.4 0.28 6.1E-06 53.9 5.3 80 587-667 6-87 (310)
359 KOG4206 Spliceosomal protein s 91.4 0.6 1.3E-05 48.6 7.3 74 163-237 144-219 (221)
360 KOG1595 CCCH-type Zn-finger pr 90.9 0.093 2E-06 60.4 1.0 34 80-114 233-266 (528)
361 KOG1975 mRNA cap methyltransfe 90.8 0.46 1E-05 52.2 6.1 61 601-661 117-184 (389)
362 COG1189 Predicted rRNA methyla 90.8 0.43 9.4E-06 50.4 5.8 54 585-638 63-117 (245)
363 KOG1365 RNA-binding protein Fu 90.7 0.44 9.5E-06 52.8 5.9 58 166-223 162-227 (508)
364 PF03880 DbpA: DbpA RNA bindin 90.7 0.29 6.2E-06 42.4 3.7 61 176-237 12-74 (74)
365 COG2384 Predicted SAM-dependen 90.2 0.58 1.3E-05 48.9 6.0 60 601-660 16-78 (226)
366 KOG1763 Uncharacterized conser 89.8 0.09 2E-06 56.2 -0.2 34 78-112 87-120 (343)
367 COG0863 DNA modification methy 89.7 1 2.2E-05 48.5 7.8 59 586-645 208-266 (302)
368 COG0286 HsdM Type I restrictio 89.3 0.76 1.7E-05 53.8 6.9 74 581-658 170-250 (489)
369 PF03467 Smg4_UPF3: Smg-4/UPF3 89.3 0.16 3.5E-06 51.4 1.2 68 162-229 4-82 (176)
370 KOG1190 Polypyrimidine tract-b 89.2 1.2 2.7E-05 49.9 7.8 72 166-238 298-371 (492)
371 COG1568 Predicted methyltransf 89.1 0.5 1.1E-05 50.8 4.6 64 601-665 152-217 (354)
372 COG2961 ComJ Protein involved 88.9 2.2 4.8E-05 45.4 9.2 58 606-665 93-150 (279)
373 PRK00536 speE spermidine synth 88.9 5.1 0.00011 43.3 12.2 59 584-642 52-113 (262)
374 PF01269 Fibrillarin: Fibrilla 88.8 3.3 7.1E-05 43.6 10.3 64 595-660 67-133 (229)
375 COG5252 Uncharacterized conser 88.7 0.11 2.3E-06 54.1 -0.6 34 79-113 81-114 (299)
376 PRK10458 DNA cytosine methylas 88.3 1.2 2.7E-05 51.7 7.6 58 602-661 88-146 (467)
377 PF02086 MethyltransfD12: D12 88.1 0.56 1.2E-05 49.4 4.3 56 588-643 7-62 (260)
378 PF05891 Methyltransf_PK: AdoM 88.0 1.1 2.4E-05 46.9 6.2 64 601-664 55-119 (218)
379 PF01739 CheR: CheR methyltran 87.5 1.5 3.4E-05 45.1 7.0 63 578-641 5-82 (196)
380 COG0293 FtsJ 23S rRNA methylas 87.5 1 2.2E-05 46.8 5.6 71 585-666 29-104 (205)
381 KOG1040 Polyadenylation factor 87.0 0.94 2E-05 50.2 5.4 34 79-114 73-106 (325)
382 KOG1595 CCCH-type Zn-finger pr 87.0 0.32 7E-06 56.1 1.9 35 79-117 267-301 (528)
383 PF04378 RsmJ: Ribosomal RNA s 86.7 1.9 4E-05 46.1 7.2 59 606-666 62-120 (245)
384 PRK10611 chemotaxis methyltran 86.7 2 4.2E-05 47.0 7.6 68 571-642 89-166 (287)
385 PF13578 Methyltransf_24: Meth 86.2 0.72 1.6E-05 41.9 3.4 60 606-666 1-66 (106)
386 KOG1190 Polypyrimidine tract-b 86.0 1.5 3.2E-05 49.3 6.1 72 167-238 416-489 (492)
387 KOG0147 Transcriptional coacti 84.8 2.1 4.5E-05 49.7 6.9 58 179-237 467-525 (549)
388 KOG0120 Splicing factor U2AF, 84.6 1.8 4E-05 50.4 6.4 35 202-236 454-488 (500)
389 COG0270 Dcm Site-specific DNA 84.5 1.4 3.1E-05 48.8 5.3 56 603-663 4-60 (328)
390 PF07279 DUF1442: Protein of u 84.4 12 0.00027 39.2 11.6 67 600-666 40-114 (218)
391 KOG1456 Heterogeneous nuclear 84.2 3.6 7.8E-05 45.8 7.9 75 167-242 124-201 (494)
392 COG1352 CheR Methylase of chem 84.1 2.4 5.3E-05 45.8 6.7 70 571-641 64-147 (268)
393 KOG4660 Protein Mei2, essentia 84.0 1.4 3.1E-05 51.1 5.1 66 164-229 387-458 (549)
394 PF03059 NAS: Nicotianamine sy 83.6 5.1 0.00011 43.6 8.9 60 603-662 122-187 (276)
395 KOG0105 Alternative splicing f 83.3 3 6.5E-05 42.4 6.4 63 164-229 114-177 (241)
396 KOG2494 C3H1-type Zn-finger pr 82.4 0.41 8.9E-06 52.3 0.0 26 82-108 36-62 (331)
397 KOG2591 c-Mpl binding protein, 82.3 2.4 5.2E-05 49.3 6.0 66 168-234 178-246 (684)
398 KOG0821 Predicted ribosomal RN 82.0 8.8 0.00019 40.4 9.3 77 584-661 33-110 (326)
399 KOG1253 tRNA methyltransferase 82.0 1.7 3.7E-05 50.3 4.7 64 600-663 108-175 (525)
400 KOG0128 RNA-binding protein SA 81.8 1.1 2.4E-05 54.3 3.2 76 165-240 736-815 (881)
401 KOG2651 rRNA adenine N-6-methy 81.5 3.9 8.5E-05 46.0 7.1 60 580-642 135-195 (476)
402 PF07757 AdoMet_MTase: Predict 81.5 1.7 3.8E-05 40.6 3.8 48 586-633 43-90 (112)
403 COG5152 Uncharacterized conser 81.2 0.61 1.3E-05 47.4 0.7 32 81-112 139-170 (259)
404 COG1889 NOP1 Fibrillarin-like 80.7 7.3 0.00016 40.6 8.2 64 595-660 70-135 (231)
405 KOG0129 Predicted RNA-binding 80.3 3.1 6.7E-05 48.1 6.0 59 163-221 368-432 (520)
406 PF05172 Nup35_RRM: Nup53/35/4 79.2 7 0.00015 36.1 6.9 67 165-233 6-84 (100)
407 KOG1855 Predicted RNA-binding 77.8 2.5 5.4E-05 47.8 4.2 62 165-226 231-310 (484)
408 PF06080 DUF938: Protein of un 76.9 6.8 0.00015 40.7 6.8 62 589-651 14-77 (204)
409 KOG0129 Predicted RNA-binding 76.9 4.6 0.0001 46.7 6.0 67 165-234 259-335 (520)
410 PF07576 BRAP2: BRCA1-associat 76.4 14 0.00031 34.7 8.2 63 167-229 15-81 (110)
411 KOG2940 Predicted methyltransf 75.5 4.8 0.0001 42.5 5.2 55 603-659 74-129 (325)
412 COG3129 Predicted SAM-dependen 75.3 5.5 0.00012 42.2 5.6 91 567-657 38-138 (292)
413 KOG1456 Heterogeneous nuclear 74.3 6.5 0.00014 43.9 6.1 65 166-230 407-475 (494)
414 KOG2198 tRNA cytosine-5-methyl 73.4 7.4 0.00016 43.8 6.4 64 597-660 151-220 (375)
415 TIGR00497 hsdM type I restrict 73.0 7.7 0.00017 45.6 6.9 72 575-648 193-270 (501)
416 KOG3987 Uncharacterized conser 72.8 1.2 2.6E-05 46.1 0.2 40 602-641 113-152 (288)
417 KOG1039 Predicted E3 ubiquitin 72.2 1.4 2.9E-05 49.3 0.4 24 84-108 9-32 (344)
418 KOG0128 RNA-binding protein SA 71.3 0.73 1.6E-05 55.8 -2.1 73 165-237 667-744 (881)
419 PF04672 Methyltransf_19: S-ad 71.1 6 0.00013 42.8 4.9 73 590-662 56-134 (267)
420 PF10309 DUF2414: Protein of u 70.9 17 0.00037 30.7 6.5 54 166-222 6-62 (62)
421 PF14605 Nup35_RRM_2: Nup53/35 69.0 10 0.00022 30.7 4.8 50 167-219 3-53 (53)
422 KOG2920 Predicted methyltransf 68.5 3.6 7.9E-05 44.6 2.6 38 600-637 115-153 (282)
423 PF03141 Methyltransf_29: Puta 68.4 11 0.00024 44.0 6.6 39 603-641 119-160 (506)
424 PF04847 Calcipressin: Calcipr 68.3 7.3 0.00016 39.9 4.6 57 179-238 9-69 (184)
425 KOG3178 Hydroxyindole-O-methyl 68.3 6 0.00013 44.1 4.3 45 603-648 179-223 (342)
426 PF08675 RNA_bind: RNA binding 68.1 12 0.00027 33.5 5.4 53 168-223 11-63 (87)
427 PLN02232 ubiquinone biosynthes 68.0 5.2 0.00011 39.5 3.5 35 627-661 1-38 (160)
428 KOG2333 Uncharacterized conser 67.7 3.8 8.2E-05 47.3 2.6 52 85-136 116-182 (614)
429 PF11767 SET_assoc: Histone ly 66.3 19 0.00042 30.8 6.0 54 176-233 11-64 (66)
430 KOG0804 Cytoplasmic Zn-finger 65.3 13 0.00029 42.5 6.2 65 165-229 74-142 (493)
431 KOG0024 Sorbitol dehydrogenase 64.7 12 0.00025 41.7 5.5 60 593-656 161-223 (354)
432 KOG4410 5-formyltetrahydrofola 63.2 13 0.00029 40.1 5.5 45 167-211 332-376 (396)
433 KOG4589 Cell division protein 61.9 10 0.00022 39.1 4.1 51 600-661 68-122 (232)
434 PF10650 zf-C3H1: Putative zin 61.5 4.9 0.00011 27.3 1.2 20 85-105 2-21 (23)
435 PLN03209 translocon at the inn 60.2 77 0.0017 38.1 11.7 63 598-661 76-150 (576)
436 PF10237 N6-adenineMlase: Prob 60.2 1E+02 0.0022 31.0 10.9 51 582-634 8-59 (162)
437 PF05050 Methyltransf_21: Meth 58.7 21 0.00046 34.2 5.8 50 607-656 1-59 (167)
438 PF08952 DUF1866: Domain of un 57.5 16 0.00035 36.0 4.6 37 203-240 71-107 (146)
439 PF05148 Methyltransf_8: Hypot 57.4 19 0.0004 37.8 5.3 41 591-632 61-102 (219)
440 KOG2253 U1 snRNP complex, subu 56.9 7 0.00015 46.5 2.4 69 163-236 38-107 (668)
441 KOG2793 Putative N2,N2-dimethy 55.8 16 0.00034 39.3 4.6 47 602-648 87-133 (248)
442 KOG1098 Putative SAM-dependent 55.6 17 0.00036 43.5 5.0 46 588-633 31-79 (780)
443 KOG3924 Putative protein methy 53.3 15 0.00033 41.7 4.2 71 590-660 181-262 (419)
444 KOG3201 Uncharacterized conser 53.2 9.8 0.00021 38.3 2.3 60 587-646 15-77 (201)
445 PF11899 DUF3419: Protein of u 53.1 25 0.00054 40.1 5.9 48 595-642 29-76 (380)
446 PF06962 rRNA_methylase: Putat 53.0 27 0.00059 34.2 5.4 38 625-662 1-39 (140)
447 KOG2333 Uncharacterized conser 52.9 5.4 0.00012 46.0 0.6 28 82-109 75-104 (614)
448 KOG1709 Guanidinoacetate methy 52.4 54 0.0012 34.7 7.6 70 600-670 100-170 (271)
449 KOG1269 SAM-dependent methyltr 52.2 13 0.00029 42.0 3.5 96 561-658 70-169 (364)
450 KOG2202 U2 snRNP splicing fact 50.6 6.8 0.00015 41.8 0.9 31 76-107 145-175 (260)
451 COG1743 Adenine-specific DNA m 48.2 19 0.00041 44.1 4.1 45 600-644 89-133 (875)
452 KOG1813 Predicted E3 ubiquitin 48.0 6.2 0.00014 42.8 0.1 30 81-110 184-213 (313)
453 KOG1996 mRNA splicing factor [ 47.9 35 0.00076 37.2 5.6 58 179-236 300-363 (378)
454 cd08283 FDH_like_1 Glutathione 47.1 40 0.00087 37.8 6.4 48 595-642 178-228 (386)
455 PLN02540 methylenetetrahydrofo 46.6 51 0.0011 39.5 7.3 80 578-659 5-98 (565)
456 PRK01747 mnmC bifunctional tRN 46.2 1.2E+02 0.0026 37.0 10.6 37 602-638 58-108 (662)
457 KOG2068 MOT2 transcription fac 45.6 7.6 0.00016 42.9 0.3 74 167-240 79-163 (327)
458 PF02254 TrkA_N: TrkA-N domain 45.6 29 0.00062 31.6 4.1 46 609-661 3-52 (116)
459 PF07942 N2227: N2227-like pro 44.7 39 0.00085 36.7 5.6 41 601-641 56-96 (270)
460 KOG1492 C3H1-type Zn-finger pr 43.7 9.6 0.00021 39.5 0.7 40 6-45 38-77 (377)
461 KOG0115 RNA-binding protein p5 42.4 28 0.0006 37.4 3.8 62 167-228 33-98 (275)
462 PF02636 Methyltransf_28: Puta 42.3 38 0.00081 36.0 5.0 43 602-644 19-71 (252)
463 KOG2352 Predicted spermine/spe 41.5 36 0.00077 39.8 4.8 66 602-667 296-363 (482)
464 PRK15181 Vi polysaccharide bio 40.9 60 0.0013 35.9 6.5 58 603-661 16-81 (348)
465 KOG1295 Nonsense-mediated deca 40.8 21 0.00045 40.3 2.7 62 166-227 8-77 (376)
466 COG1064 AdhP Zn-dependent alco 40.5 50 0.0011 37.1 5.7 46 597-642 162-209 (339)
467 COG4301 Uncharacterized conser 40.4 1.5E+02 0.0033 32.1 8.8 85 581-666 58-150 (321)
468 PF02714 DUF221: Domain of unk 40.4 31 0.00068 37.8 4.1 31 205-237 1-31 (325)
469 KOG3045 Predicted RNA methylas 38.6 36 0.00077 36.9 3.9 25 593-617 171-196 (325)
470 KOG1201 Hydroxysteroid 17-beta 38.3 65 0.0014 35.5 6.0 58 601-660 37-97 (300)
471 PRK07102 short chain dehydroge 35.8 1.1E+02 0.0023 31.5 7.1 57 604-661 3-63 (243)
472 COG5379 BtaA S-adenosylmethion 35.1 87 0.0019 34.6 6.2 47 598-644 60-106 (414)
473 COG1063 Tdh Threonine dehydrog 34.3 80 0.0017 35.3 6.2 41 601-641 168-211 (350)
474 COG1062 AdhC Zn-dependent alco 34.0 91 0.002 35.1 6.3 49 593-641 177-228 (366)
475 COG5084 YTH1 Cleavage and poly 33.6 74 0.0016 34.9 5.5 31 80-111 101-131 (285)
476 PF05575 V_cholerae_RfbT: Vibr 33.3 28 0.0006 35.1 2.0 57 589-647 69-127 (286)
477 PLN00016 RNA-binding protein; 33.2 1.1E+02 0.0023 34.3 7.0 58 603-660 53-121 (378)
478 KOG2318 Uncharacterized conser 32.3 1.2E+02 0.0026 36.2 7.1 72 163-234 172-300 (650)
479 PF04989 CmcI: Cephalosporin h 31.4 57 0.0012 34.1 4.0 57 602-660 33-96 (206)
480 PRK07904 short chain dehydroge 31.4 1.3E+02 0.0027 31.6 6.8 59 601-660 7-71 (253)
481 PRK11524 putative methyltransf 31.0 87 0.0019 33.9 5.6 32 751-782 29-78 (284)
482 PF08098 ATX_III: Anemonia sul 31.0 25 0.00054 24.4 0.9 16 84-102 7-22 (27)
483 PF03721 UDPG_MGDP_dh_N: UDP-g 31.0 48 0.001 33.7 3.4 49 611-666 7-59 (185)
484 KOG0112 Large RNA-binding prot 30.9 57 0.0012 40.6 4.4 72 167-239 457-530 (975)
485 PLN00141 Tic62-NAD(P)-related 30.3 3E+02 0.0065 28.6 9.4 53 602-660 17-73 (251)
486 PF05206 TRM13: Methyltransfer 30.1 95 0.0021 33.6 5.6 45 589-633 6-57 (259)
487 PF00564 PB1: PB1 domain; Int 29.5 1.1E+02 0.0023 26.4 4.9 61 171-234 16-79 (84)
488 PF01234 NNMT_PNMT_TEMT: NNMT/ 29.1 38 0.00083 36.5 2.4 45 600-644 55-100 (256)
489 COG0338 Dam Site-specific DNA 28.5 90 0.002 34.1 5.1 54 648-783 154-225 (274)
490 PRK06194 hypothetical protein; 28.3 1.7E+02 0.0037 30.8 7.3 57 602-660 6-66 (287)
491 KOG4676 Splicing factor, argin 27.7 70 0.0015 36.3 4.1 71 167-238 9-87 (479)
492 PRK07326 short chain dehydroge 27.5 1.6E+02 0.0036 29.8 6.8 56 602-660 6-65 (237)
493 COG3392 Adenine-specific DNA m 27.4 39 0.00084 36.6 2.0 35 600-634 26-60 (330)
494 KOG0112 Large RNA-binding prot 26.7 21 0.00045 44.2 -0.1 74 167-240 374-451 (975)
495 PRK08945 putative oxoacyl-(acy 26.5 2.2E+02 0.0048 29.2 7.6 57 601-658 11-71 (247)
496 PRK12939 short chain dehydroge 26.4 2E+02 0.0043 29.3 7.2 57 602-660 7-67 (250)
497 KOG0022 Alcohol dehydrogenase, 26.0 1.3E+02 0.0028 33.7 5.7 49 593-641 184-235 (375)
498 cd08254 hydroxyacyl_CoA_DH 6-h 25.4 1.6E+02 0.0035 31.5 6.6 46 596-641 160-207 (338)
499 COG4798 Predicted methyltransf 25.4 57 0.0012 34.0 2.7 39 594-632 41-82 (238)
500 cd00423 Pterin_binding Pterin 25.0 1.5E+02 0.0032 31.8 6.0 43 568-613 5-48 (258)
No 1
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.9e-69 Score=592.91 Aligned_cols=459 Identities=38% Similarity=0.536 Sum_probs=375.5
Q ss_pred EEEeCCCcccCHHHHHHHhhhccceee-EeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCCccccc
Q 003969 168 KCLVHLPRKWHSDNLKKFLADHGILYK-SAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRSFDKNI 246 (783)
Q Consensus 168 i~V~nLp~~~~~~~Lkklf~~~~v~~~-~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr~~~k~~ 246 (783)
+-..++|.......+++-+........ +.+......+++++|++++.+.+|+..++|..|+|..++|..+......+.+
T Consensus 28 ~~~e~~~~~~~q~~~~k~~~~~~~~~~s~tk~~~~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~~~~~~ 107 (534)
T KOG2187|consen 28 ISIEMIPTFIGQKQLNKVLLKILRDVKSKTKLPKMPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEVGSLRR 107 (534)
T ss_pred cceeccCchhhhhHHHhhhhhhcccccccCCCCCCCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcccccccccc
Confidence 445566777777777666665422222 2222334589999999999999999999999999999998777554333322
Q ss_pred CCccccccccccccccCCCchhhhhcccCCCCCCCCCCCCCCCCCCCCccccccccccccCCCCChHHHHHHHHHHHHHH
Q 003969 247 KSPMTLSGNAKQASESAVPGELAEAHASSNGHEDGNGNDEGLAGDGSGLKVKSARDVVTPLAHMSYSVQLEHKKNSIAQM 326 (783)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vcpLqhl~YeeQL~~K~~~v~~~ 326 (783)
+. .. +| ..+....+.++++|+|||.++|.+||+.|++....+
T Consensus 108 ~~--------~~------~~------------------------~~~~~~~r~~~~~Vtpl~~~Sy~~qL~lk~~~~~~v 149 (534)
T KOG2187|consen 108 RK--------SQ------PG------------------------PTEPPQQRTARDVVTPLEYLSYGEQLELKQLSQEAV 149 (534)
T ss_pred cc--------cC------CC------------------------cCccccchhhhhhcceeeeeccccchhhhhccHHHH
Confidence 11 00 00 114456677899999999999999999999999999
Q ss_pred HHHHhhhhhccCCCCCCchhhhhhhcccCCCCccccccccCCCCccceeeEEEEEEeecCCcc-eEeeeccccCCCccee
Q 003969 327 LKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAV 405 (783)
Q Consensus 327 L~ri~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~l~~Ii~SP~~~gYRNK~eftvg~~~~G~~-~vGF~~g~~~~gs~~V 405 (783)
|+++.+.+...... ...|+.. .+....|.|++|+|||.+.||||||+|++|...+|+. ++||++|+|..|.+.+
T Consensus 150 l~kl~~~~~~li~~---kv~~~~~--~~~~~d~~Le~I~pSp~~~~yrnKceFsvg~~~~g~~~~vgf~lg~~~~g~~~~ 224 (534)
T KOG2187|consen 150 LQKLERLIGDLIRA---KVAFLGP--QYHLHDRVLEVIIPSPIQNGYRNKCEFSVGQLLDGEDDTVGFVLGRFSKGAFAV 224 (534)
T ss_pred HHHHHHHHHHHHhh---eeecccc--cchhhcccccccccCccccCchhcceeeccccccCCcCceeeeeeeeecCceEE
Confidence 99988743222111 1123222 2223356899999999999999999999998888997 9999999999999999
Q ss_pred eCCCCCcCCCHHHHHHHHHHHHHHHhCCCCcccccccCCcceEEEEeecCCCCCCCccccceecccccccceEEEEEEec
Q 003969 406 EEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVS 485 (783)
Q Consensus 406 v~~~~C~iis~~l~~i~~~~~~~l~~s~l~~yd~~~~~G~wR~L~VR~s~~~~~~~~~~~~~~~~~~~~~gevmliv~v~ 485 (783)
+.+.+|+++++.+..+++.||.|++++++.||+.+.+.||||+|+||+.. .|..|+|+.+.
T Consensus 225 ~~pvd~~llp~~~~~V~s~~Q~f~R~t~l~P~~~~~~~G~wk~LtVRt~~-------------------~~~~~~il~i~ 285 (534)
T KOG2187|consen 225 VAPVDVKLLPEIMSQVASAVQEFYRETKLSPYDDFPKGGFWKQLTVRTEF-------------------RGGAMAILTIH 285 (534)
T ss_pred eccccccccChHHHHHHHHHHHHHhcCCCccccccCCCCceeeeEEEecc-------------------cCceEEEEEEE
Confidence 99999999999999999999999999999999999999999999999543 24678888888
Q ss_pred CCCcchhhhhHHHHHHHHHHHhccccCCCCCCceEEEEEccCCCccccCCCCCceeccCCCCCCCCCccccccccceEEe
Q 003969 486 SATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEARIHDS 565 (783)
Q Consensus 486 ~~~l~~~~~~~~~~~L~~~~~~~~~~~~p~~~v~sl~~q~~~~~sn~~~~d~~~~~l~~~~~~g~~~~~~l~G~~~I~E~ 565 (783)
+..+..+++.++...+.+.|..+++..+ .+..+|||.+.+.++. +.+.++. ++.|+.+|+|.
T Consensus 286 ~~~l~~e~l~e~~~ki~~~f~~~~~~a~---~l~~l~~q~~~~ts~~-~~~~~~~--------------l~~~~~~I~E~ 347 (534)
T KOG2187|consen 286 PCKLATEELTELKKKIEQRFLSGPGFAS---GLRVLYLQESGHTSDG-QEGKPLQ--------------LVGGDPYITES 347 (534)
T ss_pred eecccHHHHHHHHHHHHHHHhccccccc---ceeEEEEecccccccC-CCCCCeE--------------EEccccEEEee
Confidence 8888877888888889999987665433 2667999998777654 3333332 23478899999
Q ss_pred eCCeEEEECCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHH
Q 003969 566 ISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEI 645 (783)
Q Consensus 566 i~gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ 645 (783)
|+|++|+|||++|||+|+.+++.||+.|.+|+++..++.+||+|||||+||+++|+.+++|+|||++++||++|++||+.
T Consensus 348 l~~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~ 427 (534)
T KOG2187|consen 348 LLGLTFRISPGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQI 427 (534)
T ss_pred cCCeEEEECCchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEEccHHHHHHHHHhhhcCCCcccccccccCCchhhhhhhhccCCCCCCCCCCCCCCCCCCCCccCCCCCCCC
Q 003969 646 NGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCPEGS 725 (783)
Q Consensus 646 ngl~nv~f~~gDaed~l~~l~~~~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (783)
||++|++|++|.+++.++.+.....|
T Consensus 428 NgisNa~Fi~gqaE~~~~sl~~~~~~------------------------------------------------------ 453 (534)
T KOG2187|consen 428 NGISNATFIVGQAEDLFPSLLTPCCD------------------------------------------------------ 453 (534)
T ss_pred cCccceeeeecchhhccchhcccCCC------------------------------------------------------
Confidence 99999999999999998876543210
Q ss_pred CCCCccccccccccCCCCCCCCCCceEEEECCCCCCCcHHHHHHHHhccCCCcEEEe
Q 003969 726 GKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782 (783)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~f~~~v~ivDPPR~Gl~~~vi~~lr~~~~~~rlvYV 782 (783)
+ .+.|||+||||.|||..||++||++++++|||||
T Consensus 454 ----------------~------~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyv 488 (534)
T KOG2187|consen 454 ----------------S------ETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYV 488 (534)
T ss_pred ----------------C------CceEEEECCCcccccHHHHHHHHhccCccceEEE
Confidence 0 2369999999999999999999999999999998
No 2
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-48 Score=436.82 Aligned_cols=321 Identities=32% Similarity=0.539 Sum_probs=262.4
Q ss_pred ccccccCCCCChHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCchhhhhhhcccCCCCccccccccCCCCccceeeEEEE
Q 003969 301 RDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFS 380 (783)
Q Consensus 301 ~~~vcpLqhl~YeeQL~~K~~~v~~~L~ri~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~l~~Ii~SP~~~gYRNK~eft 380 (783)
+|++|+|||++|++||++|++.|.++|++++. ...++.+.++++.+||||||++|+
T Consensus 74 ~cggC~lqhl~y~~QL~~K~~~l~~~l~~~~~------------------------~~~~~~~~~~~~~~~~yR~ka~~~ 129 (432)
T COG2265 74 RCGGCQLQHLSYEAQLEFKREQLKELLKRIGG------------------------SEVEIDPTVGMSPPWGYRNRARFS 129 (432)
T ss_pred ccccccccCCCHHHHHHHHHHHHHHHHHHhcC------------------------CCcccccccCCCCCcCceeEEEEE
Confidence 59999999999999999999999999999863 112344567788899999999999
Q ss_pred EEeecCCcceEeeeccccCCCcceeeCCCCCcCCCHHHHHHHHHHHHHHHhCCCCcccccccCCcceEEEEeecCCCCCC
Q 003969 381 VGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKP 460 (783)
Q Consensus 381 vg~~~~G~~~vGF~~g~~~~gs~~Vv~~~~C~iis~~l~~i~~~~~~~l~~s~l~~yd~~~~~G~wR~L~VR~s~~~~~~ 460 (783)
|+...+|...+||+ +.+++.|+++.+|++.++.+..++..++++++..+.++||+..+.|.++.+++|.+.
T Consensus 130 v~~~~~~~l~~Gf~----~~~s~~iv~i~~C~v~~~~~~~il~~l~~~l~~~~~~~y~~~~~~g~l~~~~~~~g~----- 200 (432)
T COG2265 130 VRGSGKGQLLAGFF----RQGSHEIVDIDECPVFPPRSNEILPLLRELLAKLGLPPYNEKKKKGILRLIVLREGQ----- 200 (432)
T ss_pred EEEcCCCcEEEEee----ccCCCceecccccCccCHhHHHHHHHHHHHHHHcCCCccchhhccceEEEEEeccCc-----
Confidence 99876665667885 677999999999999999999999999999999999999999999999999998641
Q ss_pred CccccceecccccccceEEEEEEecCCCcchhhhhHHHHHHHHHHHhccccCCCCCCceEEEEEccCCCccccCCCCCce
Q 003969 461 LDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540 (783)
Q Consensus 461 ~~~~~~~~~~~~~~~gevmliv~v~~~~l~~~~~~~~~~~L~~~~~~~~~~~~p~~~v~sl~~q~~~~~sn~~~~d~~~~ 540 (783)
++||++.... + .++......+.+.|.. +.++++.......+....+
T Consensus 201 ----------------~~~i~~v~~~--~--~~~~~~~~~~~~~~~~----------~~~i~~~i~~~~~~~i~g~---- 246 (432)
T COG2265 201 ----------------EVMVRLVTKH--L--PELEQALRELLEAFPE----------IKGIVQNINRAKTNVIEGD---- 246 (432)
T ss_pred ----------------eEEEEEEecc--c--hhHHHHHHHHHHhhhh----------cceEEEEecCCCCceEEcc----
Confidence 5787776554 1 2344444555555521 2333332222111111111
Q ss_pred eccCCCCCCCCCccccccccceEEeeCCeEEEECCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHh
Q 003969 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLA 620 (783)
Q Consensus 541 ~l~~~~~~g~~~~~~l~G~~~I~E~i~gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA 620 (783)
....++|...|.| ++.|.+++++|||+|+.+++.||.++++++...++.+|||||||+|+||++||
T Consensus 247 -----------~~~~~~~~~~i~e---~~~~~~~~~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA 312 (432)
T COG2265 247 -----------EEITLYGLESIRE---GVSFQISPRSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLA 312 (432)
T ss_pred -----------eeEEEeccccccc---ceEEEeCCCCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhc
Confidence 1223355555555 89999999999999999999999999999999888999999999999999999
Q ss_pred hhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHHhhhcCCCcccccccccCCchhhhhhhhccCCCCC
Q 003969 621 HRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDN 700 (783)
Q Consensus 621 ~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~~l~~~~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (783)
+++.+|+|||++++||+.|++||+.||+.|++|..+++++++..+...
T Consensus 313 ~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~-------------------------------- 360 (432)
T COG2265 313 KRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEG-------------------------------- 360 (432)
T ss_pred ccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcccc--------------------------------
Confidence 999999999999999999999999999999999999999998764311
Q ss_pred CCCCCCCCCCCCCCCccCCCCCCCCCCCCccccccccccCCCCCCCCCCceEEEECCCCCCCcHHHHHHHHhccCCCcEE
Q 003969 701 VPENEGCSGQDPENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRLL 780 (783)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~ivDPPR~Gl~~~vi~~lr~~~~~~rlv 780 (783)
+..+++||||||+|+.+.+++.|.+. .++|||
T Consensus 361 -----------------------------------------------~~~d~VvvDPPR~G~~~~~lk~l~~~-~p~~Iv 392 (432)
T COG2265 361 -----------------------------------------------YKPDVVVVDPPRAGADREVLKQLAKL-KPKRIV 392 (432)
T ss_pred -----------------------------------------------CCCCEEEECCCCCCCCHHHHHHHHhc-CCCcEE
Confidence 12289999999999999999999997 899999
Q ss_pred Ee
Q 003969 781 HI 782 (783)
Q Consensus 781 YV 782 (783)
||
T Consensus 393 YV 394 (432)
T COG2265 393 YV 394 (432)
T ss_pred EE
Confidence 98
No 3
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=100.00 E-value=1.7e-47 Score=432.36 Aligned_cols=332 Identities=26% Similarity=0.380 Sum_probs=266.3
Q ss_pred ccccccCCCCChHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCchhhhhhhcccCCCCccccccccCCCCccceeeEEEE
Q 003969 301 RDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFS 380 (783)
Q Consensus 301 ~~~vcpLqhl~YeeQL~~K~~~v~~~L~ri~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~l~~Ii~SP~~~gYRNK~eft 380 (783)
.|+||+|||++|++||++|++.|.++|+|+++ +... ...+.++++ |.+||||||++|+
T Consensus 63 ~CGGC~~qh~~y~~Ql~~K~~~v~~~l~r~~~---------~~~~------------~~~~~~~~~-~~~~~YRnr~~~~ 120 (431)
T TIGR00479 63 QCGGCQLQHLDYEFQLRSKQQQVIALLERIGK---------FTSE------------PIEPLPTIG-GDPWGYRNKARLS 120 (431)
T ss_pred CCCCCcccCCCHHHHHHHHHHHHHHHHHHhcC---------CCcC------------CceecCCcC-CCCCcccceeEEE
Confidence 79999999999999999999999999999863 1000 013456676 7789999999999
Q ss_pred EEeecCCcceEeeeccccCCCcceeeCCCCCcCCCHHHHHHHHHHHHHHHhCCCCcccccccCCcceEEEEeecCCCCCC
Q 003969 381 VGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKP 460 (783)
Q Consensus 381 vg~~~~G~~~vGF~~g~~~~gs~~Vv~~~~C~iis~~l~~i~~~~~~~l~~s~l~~yd~~~~~G~wR~L~VR~s~~~~~~ 460 (783)
|+...+|+..+||+ ..|+|.|+++.+|+++++.+++++..|++++.+.++++|++.++.|+||++++|.+..
T Consensus 121 v~~~~~g~~~~G~~----~~~s~~vv~i~~C~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~lr~i~ir~~~~---- 192 (431)
T TIGR00479 121 LGRSPSGQIQAGFY----QKGSHDIVPIKQCPVQDPALNLLLPKVKAILENFGASIYLEHKELGKARHGVLRIGRR---- 192 (431)
T ss_pred eeecCCCCEEEeee----cCCCcceEcCCCCCCCCHHHHHHHHHHHHHHHHcCCCccccccCcccceEEEEEEecc----
Confidence 97544566778995 7889999999999999999999999999999999999999999999999999997532
Q ss_pred CccccceecccccccceEEEEEEecCCCcchhhhhHHHHHHHHHHHhccccCCCCCCceEEEEEccCCCccccCCCCCce
Q 003969 461 LDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540 (783)
Q Consensus 461 ~~~~~~~~~~~~~~~gevmliv~v~~~~l~~~~~~~~~~~L~~~~~~~~~~~~p~~~v~sl~~q~~~~~sn~~~~d~~~~ 540 (783)
.+++|+++......++. ...+.+.+... .+ .+.++++..+....+....
T Consensus 193 --------------~~~~~v~~~~~~~~~~~------~~~~~~~l~~~----~~--~v~~v~~~~~~~~~~~~~g----- 241 (431)
T TIGR00479 193 --------------TGELLLVLRTALEGFPH------KEELALELQER----YP--DVKSICQNINPEKTNVIFG----- 241 (431)
T ss_pred --------------CCCEEEEEEECCCcccc------HHHHHHHHHHh----CC--CceEEEEEeCCCCCCeeeC-----
Confidence 24688777544332222 12333333221 12 3567766543222111101
Q ss_pred eccCCCCCCCCCccccccccceEEeeCCeEEEECCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHh
Q 003969 541 LLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLA 620 (783)
Q Consensus 541 ~l~~~~~~g~~~~~~l~G~~~I~E~i~gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA 620 (783)
.+...++|..+++++++|++|+++|.+|||+|+.+++.|+..+.+++.+.++.+|||+|||+|++++.||
T Consensus 242 ----------~~~~~l~G~~~~~~~~~~~~~~~~~~~F~Q~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la 311 (431)
T TIGR00479 242 ----------EETEQIAGEGPIYEKSGDLSFSLSARDFFQVNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLA 311 (431)
T ss_pred ----------CceEEEeCCCeEEEEECCEEEEECCCceeecCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHH
Confidence 1123457899999999999999999999999999999999999999887788899999999999999999
Q ss_pred hhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHHhhhcCCCcccccccccCCchhhhhhhhccCCCCC
Q 003969 621 HRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDN 700 (783)
Q Consensus 621 ~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~~l~~~~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (783)
+.+.+|+|||+++.|++.|++|++.|++.|++|+++|+.++++.+....
T Consensus 312 ~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~------------------------------- 360 (431)
T TIGR00479 312 KQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAG------------------------------- 360 (431)
T ss_pred HhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcC-------------------------------
Confidence 9999999999999999999999999999999999999998765432100
Q ss_pred CCCCCCCCCCCCCCCccCCCCCCCCCCCCccccccccccCCCCCCCCCCceEEEECCCCCCCcHHHHHHHHhccCCCcEE
Q 003969 701 VPENEGCSGQDPENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRLL 780 (783)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~ivDPPR~Gl~~~vi~~lr~~~~~~rlv 780 (783)
..| +++|+||||.|+++.++++|+.. .+++||
T Consensus 361 ---------------------------------------------~~~--D~vi~dPPr~G~~~~~l~~l~~l-~~~~iv 392 (431)
T TIGR00479 361 ---------------------------------------------QIP--DVLLLDPPRKGCAAEVLRTIIEL-KPERIV 392 (431)
T ss_pred ---------------------------------------------CCC--CEEEECcCCCCCCHHHHHHHHhc-CCCEEE
Confidence 024 79999999999999999999986 789999
Q ss_pred Ee
Q 003969 781 HI 782 (783)
Q Consensus 781 YV 782 (783)
||
T Consensus 393 yv 394 (431)
T TIGR00479 393 YV 394 (431)
T ss_pred EE
Confidence 98
No 4
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=100.00 E-value=2.6e-47 Score=423.18 Aligned_cols=323 Identities=21% Similarity=0.341 Sum_probs=251.4
Q ss_pred ccccccCCCCChHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCchhhhhhhcccCCCCccccccccCCCCccceeeEEEE
Q 003969 301 RDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFS 380 (783)
Q Consensus 301 ~~~vcpLqhl~YeeQL~~K~~~v~~~L~ri~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~l~~Ii~SP~~~gYRNK~eft 380 (783)
.|+||+|||++|++||++|++.|.++|+| +. . . .++.+.++++ +||||||++|+
T Consensus 9 ~CGGC~~qhl~y~~Ql~~K~~~v~~~l~r-~~--~-------~---------------~~~~~~i~~~-~~~YRnr~~l~ 62 (374)
T TIGR02085 9 RCRSCQWLAQPYSEQLTNKQQHLKELLAP-NA--T-------V---------------VQWLAPVTSA-EQAFRNKAKMV 62 (374)
T ss_pred CCCCCcccCCCHHHHHHHHHHHHHHHHhh-cC--C-------C---------------ccccCCcCCC-CccccceEEEE
Confidence 79999999999999999999999999998 41 0 0 0122223444 79999999999
Q ss_pred EEeecCCcceEeeeccccCCCcceeeCCCCCcCCCHHHHHHHHHHHHHHHhCCCCcccccccCCcceEEEEeecCCCCCC
Q 003969 381 VGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKP 460 (783)
Q Consensus 381 vg~~~~G~~~vGF~~g~~~~gs~~Vv~~~~C~iis~~l~~i~~~~~~~l~~s~l~~yd~~~~~G~wR~L~VR~s~~~~~~ 460 (783)
|+.. .|+..+||+ ..+ +.++++.+|+++++.+++++..+++++..+++++|++.+++|+||+|++|.+..
T Consensus 63 v~~~-~~~~~~G~~----~~~-~~~v~i~~C~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lr~i~ir~~~~---- 132 (374)
T TIGR02085 63 VSGS-VERPILGIL----HRD-GTPLDLCDCPLYPQSFQPVFAYLKNFIARAGLTPYNVAKKKGELKFILLTESEN---- 132 (374)
T ss_pred EEEc-CCcEEEeEe----cCC-CcEEcCccCCCCCHhHHHHHHHHHHHHHHcCCCCccccCCCccceEEEEEEecc----
Confidence 9653 466779985 233 447899999999999999999999999999999999999999999999997532
Q ss_pred CccccceecccccccceEEEEEEecCC-CcchhhhhHHHHHHHHHHHhccccCCCCCCceEEEEEccCCCccccCCCCCc
Q 003969 461 LDVENLEVNISEVNISEVMLIAQVSSA-TFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL 539 (783)
Q Consensus 461 ~~~~~~~~~~~~~~~gevmliv~v~~~-~l~~~~~~~~~~~L~~~~~~~~~~~~p~~~v~sl~~q~~~~~sn~~~~d~~~ 539 (783)
+|++||++..... .++ ....+.+.+.. ..+ .+.++++.......+...
T Consensus 133 --------------~~~~~v~l~~~~~~~~~------~~~~~~~~~~~----~~~--~~~~v~~~~~~~~~~~~~----- 181 (374)
T TIGR02085 133 --------------SGQLMLRFVLRSETKLA------QIRRALPWLIE----QLP--QLEVISVNIQPVHMAILE----- 181 (374)
T ss_pred --------------CCCEEEEEEECCCccch------hHHHHHHHHHH----HCC--CcEEEEEEECCCCCCceE-----
Confidence 2578887754321 111 11223232221 112 244555433222111100
Q ss_pred eeccCCCCCCCCCccccccccceEEeeCCeEEEECCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHH
Q 003969 540 RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTL 619 (783)
Q Consensus 540 ~~l~~~~~~g~~~~~~l~G~~~I~E~i~gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~L 619 (783)
| .+...++|.++++|.++|++|+++|++|||+|..+++.|++.+.+++...++.+|||||||+|++++.+
T Consensus 182 ---------g-~~~~~l~G~~~i~e~~~g~~~~~~~~~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~l 251 (374)
T TIGR02085 182 ---------G-EEEIFLTEQQALPERFNDVPLVIRPQSFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHC 251 (374)
T ss_pred ---------C-ceEEEEcCCCeeEEEECCEEEEECCCccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHH
Confidence 0 112235688999999999999999999999999999999999999876556689999999999999999
Q ss_pred hhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHHhhhcCCCcccccccccCCchhhhhhhhccCCCC
Q 003969 620 AHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRD 699 (783)
Q Consensus 620 A~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~~l~~~~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (783)
+..+.+|+|||+++.|++.|++|++.|++.|++|+++|+++++....
T Consensus 252 a~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~--------------------------------- 298 (374)
T TIGR02085 252 AGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQM--------------------------------- 298 (374)
T ss_pred hhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcC---------------------------------
Confidence 99889999999999999999999999999999999999988763210
Q ss_pred CCCCCCCCCCCCCCCCccCCCCCCCCCCCCccccccccccCCCCCCCCCCceEEEECCCCCCCcHHHHHHHHhccCCCcE
Q 003969 700 NVPENEGCSGQDPENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRL 779 (783)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~ivDPPR~Gl~~~vi~~lr~~~~~~rl 779 (783)
.+| +++|+||||.|+++.++++|... .+++|
T Consensus 299 ----------------------------------------------~~~--D~vi~DPPr~G~~~~~l~~l~~~-~p~~i 329 (374)
T TIGR02085 299 ----------------------------------------------SAP--ELVLVNPPRRGIGKELCDYLSQM-APKFI 329 (374)
T ss_pred ----------------------------------------------CCC--CEEEECCCCCCCcHHHHHHHHhc-CCCeE
Confidence 024 79999999999999999999986 88999
Q ss_pred EEe
Q 003969 780 LHI 782 (783)
Q Consensus 780 vYV 782 (783)
|||
T Consensus 330 vyv 332 (374)
T TIGR02085 330 LYS 332 (374)
T ss_pred EEE
Confidence 998
No 5
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=100.00 E-value=4.4e-44 Score=395.75 Aligned_cols=314 Identities=19% Similarity=0.261 Sum_probs=230.4
Q ss_pred cccccCCCCChHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCchhhhhhhcccCCCCccccccccCCCCccceeeEEEEE
Q 003969 302 DVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSV 381 (783)
Q Consensus 302 ~~vcpLqhl~YeeQL~~K~~~v~~~L~ri~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~l~~Ii~SP~~~gYRNK~eftv 381 (783)
|+||+|||++|++||++|++.|.++|+|++. . .+ ++++|| +||||||++|+|
T Consensus 1 CGGC~~qhl~y~~Ql~~K~~~v~~~l~r~~~------------------------~--~~-~i~~s~-~~~YRnr~~~~v 52 (362)
T PRK05031 1 MTPECLPPEQYEAQLAEKVARLKELFAPFSA------------------------P--EP-EVFRSP-PSHYRMRAEFRI 52 (362)
T ss_pred CCCccCCCCCHHHHHHHHHHHHHHHHHhcCC------------------------C--CC-CcccCC-cccccceEEEEE
Confidence 7999999999999999999999999999752 0 12 567776 799999999999
Q ss_pred EeecCCcceEeeeccccCCCcceeeCCCCCcCCCHHHHHHHHHHHHHHHhCCCCcccccccCCcceEEEEeecCCCCCCC
Q 003969 382 GYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPL 461 (783)
Q Consensus 382 g~~~~G~~~vGF~~g~~~~gs~~Vv~~~~C~iis~~l~~i~~~~~~~l~~s~l~~yd~~~~~G~wR~L~VR~s~~~~~~~ 461 (783)
+.. .|+..+||+ +.|+|.|+++.+|+++++.+++++..++++++.. +...+. ++++.++.+ .
T Consensus 53 ~~~-~g~~~~G~~----~~~s~~vv~i~~C~i~~~~~~~~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~-~----- 114 (362)
T PRK05031 53 WHE-GDDLYYAMF----DQQTKQRIRIDQFPIASELINALMPALLAALRAN-----PVLRHK--LFQVDFLST-L----- 114 (362)
T ss_pred EEe-CCCEEEEEE----eCCCCCeEECccCcCCCHHHHHHHHHHHHHHHhc-----CchheE--EEEEEEEec-C-----
Confidence 642 266678985 7789999999999999999999999999887653 222222 122222221 1
Q ss_pred ccccceecccccccceEEEEEEecCCCcchhhhhHHHHHHHHHHHhccccCCCCCCceEEEEEccCCCccccCCCCCcee
Q 003969 462 DVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRL 541 (783)
Q Consensus 462 ~~~~~~~~~~~~~~gevmliv~v~~~~l~~~~~~~~~~~L~~~~~~~~~~~~p~~~v~sl~~q~~~~~sn~~~~d~~~~~ 541 (783)
.|++||++... ..+++ .+ ..+...+.. ..+. + ++ +.. ..
T Consensus 115 -------------~g~~~v~l~~~-~~~~~-~~----~~~~~~l~~----~~~~--~-~i--~~~--------~~----- 153 (362)
T PRK05031 115 -------------SGEILVSLLYH-KKLDE-EW----EQAAKALRD----ALFN--V-HL--IGR--------SR----- 153 (362)
T ss_pred -------------CCCEEEEEEEC-CCCCh-HH----HHHHHHHHH----HCCC--c-EE--Eec--------CC-----
Confidence 25788877543 22221 12 223232221 0111 2 22 110 00
Q ss_pred ccCCCCCCCCCccccccccceEEee--CC--eEEEECCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHH
Q 003969 542 LSIPKADGEPEESNDVVEARIHDSI--SN--LRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGL 617 (783)
Q Consensus 542 l~~~~~~g~~~~~~l~G~~~I~E~i--~g--l~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l 617 (783)
....++|.++++|.+ +| +.|+++|++|||+|+.+++.|++++.+++... +.+|||||||+|+|++
T Consensus 154 ----------~~~~~~G~~~i~e~l~~~~~~~~~~~~~~sF~Q~N~~~~e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl 222 (362)
T PRK05031 154 ----------KQKIVLDQDYVDERLPVAGREFIYRQVENSFTQPNAAVNEKMLEWALDATKGS-KGDLLELYCGNGNFTL 222 (362)
T ss_pred ----------CcEEEcCCCEEEEEEecCCcEEEEEeCCCCeeccCHHHHHHHHHHHHHHhhcC-CCeEEEEeccccHHHH
Confidence 012346889999999 67 89999999999999999999999999988643 3579999999999999
Q ss_pred HHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHHhhhcCCCcccccccccCCchhhhhhhhccCC
Q 003969 618 TLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSS 697 (783)
Q Consensus 618 ~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~~l~~~~~d~p~~~~~~~~~~~~~~~~~~~~~~~~ 697 (783)
+|++.+++|+|||+++.|++.|++|+..|++.|++|+++|+.++++.+..... ..+.+
T Consensus 223 ~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~-~~~~~--------------------- 280 (362)
T PRK05031 223 ALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVRE-FNRLK--------------------- 280 (362)
T ss_pred HHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccc-ccccc---------------------
Confidence 99999999999999999999999999999999999999999998876432100 00000
Q ss_pred CCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCccccccccccCCCCCCCCCCceEEEECCCCCCCcHHHHHHHHhccCCC
Q 003969 698 RDNVPENEGCSGQDPENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQ 777 (783)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~ivDPPR~Gl~~~vi~~lr~~~~~~ 777 (783)
..+ + . ...| +++||||||.|+++++|++|++ ++
T Consensus 281 ~~~--------------------------------~------~----~~~~--D~v~lDPPR~G~~~~~l~~l~~---~~ 313 (362)
T PRK05031 281 GID--------------------------------L------K----SYNF--STIFVDPPRAGLDDETLKLVQA---YE 313 (362)
T ss_pred ccc--------------------------------c------c----CCCC--CEEEECCCCCCCcHHHHHHHHc---cC
Confidence 000 0 0 0124 8999999999999999999987 58
Q ss_pred cEEEe
Q 003969 778 RLLHI 782 (783)
Q Consensus 778 rlvYV 782 (783)
+||||
T Consensus 314 ~ivyv 318 (362)
T PRK05031 314 RILYI 318 (362)
T ss_pred CEEEE
Confidence 99998
No 6
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=100.00 E-value=7.3e-40 Score=371.37 Aligned_cols=313 Identities=24% Similarity=0.351 Sum_probs=228.6
Q ss_pred ccccccCCCCChHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCchhhhhhhcccCCCCccccccccCCCCccceeeEEEE
Q 003969 301 RDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFS 380 (783)
Q Consensus 301 ~~~vcpLqhl~YeeQL~~K~~~v~~~L~ri~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~l~~Ii~SP~~~gYRNK~eft 380 (783)
.|+||+||||+|++||++|++.|.++|+|+++ ++ ..++.+.++++ +||||||++|+
T Consensus 85 ~CGGC~~qh~~y~~Ql~~K~~~v~~~l~r~~~---------~~--------------~~~~~~~i~~~-~~~YRnk~~~~ 140 (443)
T PRK13168 85 VCGGCQLQHLSIDAQIASKQRALEDLLKHLAG---------VE--------------PEEVLPPIAGP-PWGYRRRARLS 140 (443)
T ss_pred cCcCchhcCCCHHHHHHHHHHHHHHHHHHhcC---------CC--------------cccccCCCcCC-CCCCCceEEEE
Confidence 69999999999999999999999999999863 10 01222122333 79999999999
Q ss_pred EEee-cCCcceEeeeccccCCCcceeeCCCCCcCCCHHHHHHHHHHHHHHHhCCCCcccccccCCcceEEEEeecCCCCC
Q 003969 381 VGYS-LQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGK 459 (783)
Q Consensus 381 vg~~-~~G~~~vGF~~g~~~~gs~~Vv~~~~C~iis~~l~~i~~~~~~~l~~s~l~~yd~~~~~G~wR~L~VR~s~~~~~ 459 (783)
|+.. .+|.+.+||+ ..|+|.|+++.+|+++++.+++++..+++++.. |+.. |.+++|.+|.+. +
T Consensus 141 ~~~~~~~g~~~~G~~----~~~s~~vv~i~~C~l~~~~~~~~~~~~~~~~~~-----~~~~---~~~~~l~~~~~~-~-- 205 (443)
T PRK13168 141 VRYVPKKGQLLVGFR----EKNSSDIVDIDQCPVLVPPLSALLPPLRALLSS-----LSAK---RRLGHVELAQGD-N-- 205 (443)
T ss_pred eeeecCCCCEEEEEe----cCCCceeEECCCCccCCHhHHHHHHHHHHHHHH-----cCCC---ccccEEEEEEeC-C--
Confidence 9643 2466788996 678899999999999999999999999998765 3322 344555566431 1
Q ss_pred CCccccceecccccccceEEEEEEecCCCcchhhhhHHHHHHHHHHHhccccCCCCCCceEEEEEccCCCccccCCCCCc
Q 003969 460 PLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL 539 (783)
Q Consensus 460 ~~~~~~~~~~~~~~~~gevmliv~v~~~~l~~~~~~~~~~~L~~~~~~~~~~~~p~~~v~sl~~q~~~~~sn~~~~d~~~ 539 (783)
+..|++. .. ..+++. ..+.+.+ +.. . ..+ +++++... .+.
T Consensus 206 ----------------~~~~~~~-~~-~~~~~~----~~~~~~~-~~~----~---~~~-~i~~~~~~---------~~~ 245 (443)
T PRK13168 206 ----------------GTALVLR-HL-EPLSEA----DRAKLRA-FAE----Q---HGL-QLYLQPKG---------PDL 245 (443)
T ss_pred ----------------ceEEEEE-Ec-CCCChH----HHHHHHH-Hhh----c---ccE-EEEEECCC---------Ccc
Confidence 3444432 21 123221 1122322 221 0 113 55544321 112
Q ss_pred eeccCCCCCCCCCccccccccceEEeeCCeEEEECCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHH
Q 003969 540 RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTL 619 (783)
Q Consensus 540 ~~l~~~~~~g~~~~~~l~G~~~I~E~i~gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~L 619 (783)
..+.. ..++...+.+.|+|+.|+++|.+|||+|+.+++.|+..+++++.+.++.+|||||||+|++++.|
T Consensus 246 ~~i~g----------~~~~~~~~~~~~~g~~f~~~~~~F~q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~l 315 (443)
T PRK13168 246 VHLLG----------PADAQLSYYLPEFGLRLAFSPRDFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPL 315 (443)
T ss_pred eeecc----------cccCCcceEEEcCCeEEEECCCCeEEcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHH
Confidence 11110 01223233444999999999999999999999999999999998888899999999999999999
Q ss_pred hhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHHhhhcCCCcccccccccCCchhhhhhhhccCCCC
Q 003969 620 AHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRD 699 (783)
Q Consensus 620 A~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~~l~~~~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (783)
|+.+.+|+|||+++.|++.|++|++.+++.|++|+++|+.+.+..+...
T Consensus 316 a~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~------------------------------- 364 (443)
T PRK13168 316 ARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWA------------------------------- 364 (443)
T ss_pred HHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhh-------------------------------
Confidence 9999999999999999999999999999999999999998765321100
Q ss_pred CCCCCCCCCCCCCCCCccCCCCCCCCCCCCccccccccccCCCCCCCCCCceEEEECCCCCCCcHHHHHHHHhccCCCcE
Q 003969 700 NVPENEGCSGQDPENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRL 779 (783)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~ivDPPR~Gl~~~vi~~lr~~~~~~rl 779 (783)
+ ..| |++|+||||.|+. .++++|... .+++|
T Consensus 365 -----------------------------------------~----~~f--D~Vi~dPPr~g~~-~~~~~l~~~-~~~~i 395 (443)
T PRK13168 365 -----------------------------------------L----GGF--DKVLLDPPRAGAA-EVMQALAKL-GPKRI 395 (443)
T ss_pred -----------------------------------------c----CCC--CEEEECcCCcChH-HHHHHHHhc-CCCeE
Confidence 0 125 7999999999985 777999886 88999
Q ss_pred EEe
Q 003969 780 LHI 782 (783)
Q Consensus 780 vYV 782 (783)
|||
T Consensus 396 vyv 398 (443)
T PRK13168 396 VYV 398 (443)
T ss_pred EEE
Confidence 998
No 7
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=100.00 E-value=8.1e-41 Score=368.36 Aligned_cols=302 Identities=32% Similarity=0.544 Sum_probs=195.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCchhhhhhhcccCCCCccccccccCCCCccceeeEEEEEEeecCCcce
Q 003969 311 SYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPT 390 (783)
Q Consensus 311 ~YeeQL~~K~~~v~~~L~ri~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~l~~Ii~SP~~~gYRNK~eftvg~~~~G~~~ 390 (783)
.|++||++|++.|.++|+|++. . .+ .|++|| .||||||++|+|+.+ .|+..
T Consensus 1 ~Y~~QL~~K~~~l~~~l~~~~~------------------------~--~~-~i~~s~-~~~YRnKa~~~v~~~-~~~~~ 51 (352)
T PF05958_consen 1 KYEKQLEFKQQILKELLRRIGK------------------------L--EI-EIIASP-PWGYRNKARFPVRKD-KGKLI 51 (352)
T ss_dssp GHHHHHHHHHHHHHHHHTTT--------------------------------EEE----SSS-BSEEEEEEEEC-TTCEE
T ss_pred ChHHHHHHHHHHHHHHHHhcCC------------------------C--CC-ceecCC-ChhcccEEEEEEEEc-CCcEE
Confidence 4999999999999999998752 0 11 367788 589999999999875 45556
Q ss_pred EeeeccccCCCcceeeCCCCCcCCCHHHHHHHHHHHHHHHhCCCCcccccccCCcceEEEEeecCCCCCCCccccceecc
Q 003969 391 VGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNI 470 (783)
Q Consensus 391 vGF~~g~~~~gs~~Vv~~~~C~iis~~l~~i~~~~~~~l~~s~l~~yd~~~~~G~wR~L~VR~s~~~~~~~~~~~~~~~~ 470 (783)
+||+ ++++|.++++++||++++.+++++..+.++++.. . .. ...++++.++.+.
T Consensus 52 ~g~~----~~~s~~iv~i~~C~i~~~~In~~l~~l~~~l~~~-----~-~l-~~~l~~i~~~~~~--------------- 105 (352)
T PF05958_consen 52 LGFF----RRGSHEIVDIEECPIADPEINKLLPALRELLKKN-----E-KL-KNKLFHIEFLSTL--------------- 105 (352)
T ss_dssp EEEE----ECTTS-EEE-S--TTB-HHHHHHHHHHHHHHTTS-----H-HH-HTCEEEEEEEEET---------------
T ss_pred EEEE----ecCCCceEECCCCccccHHHHHHHHHHHHHHhhh-----h-hh-hceeeEEEEEEec---------------
Confidence 6764 6778899999999999999999999999988532 1 11 1235566666432
Q ss_pred cccccceEEEEEEecCCCcchhhhhHHHHHHHHHHHhccccCCCCCCceEEEEEccCCCccccCCCCCceeccCCCCCCC
Q 003969 471 SEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGE 550 (783)
Q Consensus 471 ~~~~~gevmliv~v~~~~l~~~~~~~~~~~L~~~~~~~~~~~~p~~~v~sl~~q~~~~~sn~~~~d~~~~~l~~~~~~g~ 550 (783)
.+++||++..+. .+++ ........|... + .+.+.. .+ ..
T Consensus 106 ----~~ei~V~lv~~~-~l~~-----~~~~~~~~L~~~---------~-~~~ii~---~~-----~~------------- 144 (352)
T PF05958_consen 106 ----SGEIMVTLVTHK-PLDD-----EWKEALEALAQN---------L-NVNIIG---RS-----KK------------- 144 (352)
T ss_dssp ----TCEEEEEEEESS----H-----HHHHHHHHHHHT---------E-EEEEEC---CC-----TC-------------
T ss_pred ----CCCEEEEEEeCC-cCCH-----HHHHHHHhhhhc---------c-eEEEEE---cC-----Cc-------------
Confidence 257888876653 3432 122233334320 1 111111 00 00
Q ss_pred CCccccccccceEEee----CCeEEEECCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEE
Q 003969 551 PEESNDVVEARIHDSI----SNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMV 626 (783)
Q Consensus 551 ~~~~~l~G~~~I~E~i----~gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~V 626 (783)
....+|..++.+.+ .++.|+++|++|||+|+.+++.||.++++++...++ .|||||||+|+||++||..+++|
T Consensus 145 --~~~~~~~~~v~~~l~~~~~~~~~~~~~~sFfQvN~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~~V 221 (352)
T PF05958_consen 145 --TKIVLGQDYVEERLEIQDKGLSFRISPGSFFQVNPEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAKKV 221 (352)
T ss_dssp --EEEECS-CEEECE--ECCCTEEEEEETTS---SBHHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSSEE
T ss_pred --cEEEccCcEEeeEeeeeccceEEEECCCcCccCcHHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCCeE
Confidence 01112344444433 478999999999999999999999999999987766 79999999999999999999999
Q ss_pred EEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHHhh--hcCCCcccccccccCCchhhhhhhhccCCCCCCCCC
Q 003969 627 IGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD--YLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPEN 704 (783)
Q Consensus 627 igVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~~l~~~--~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (783)
+|||++++||++|++|++.|+++|++|++++++++...+... +. +- . .+
T Consensus 222 ~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~---~~----------~-------------~~--- 272 (352)
T PF05958_consen 222 IGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFN---RL----------K-------------GI--- 272 (352)
T ss_dssp EEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGT---TG----------G-------------GS---
T ss_pred EEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHH---hh----------h-------------hh---
Confidence 999999999999999999999999999999999876554321 10 00 0 00
Q ss_pred CCCCCCCCCCCccCCCCCCCCCCCCccccccccccCCCCCCCCCCceEEEECCCCCCCcHHHHHHHHhccCCCcEEEe
Q 003969 705 EGCSGQDPENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782 (783)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~ivDPPR~Gl~~~vi~~lr~~~~~~rlvYV 782 (783)
. ...+..+++||||||+|+++.++..|+. ++|||||
T Consensus 273 ---------------------------~------------~~~~~~d~vilDPPR~G~~~~~~~~~~~---~~~ivYv 308 (352)
T PF05958_consen 273 ---------------------------D------------LKSFKFDAVILDPPRAGLDEKVIELIKK---LKRIVYV 308 (352)
T ss_dssp ----------------------------------------GGCTTESEEEE---TT-SCHHHHHHHHH---SSEEEEE
T ss_pred ---------------------------h------------hhhcCCCEEEEcCCCCCchHHHHHHHhc---CCeEEEE
Confidence 0 0012338999999999999999999974 5799998
No 8
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=100.00 E-value=6.8e-38 Score=345.30 Aligned_cols=256 Identities=18% Similarity=0.253 Sum_probs=190.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCchhhhhhhcccCCCCccccccccCCCCccceeeEEEEEEeecCCcce
Q 003969 311 SYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPT 390 (783)
Q Consensus 311 ~YeeQL~~K~~~v~~~L~ri~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~l~~Ii~SP~~~gYRNK~eftvg~~~~G~~~ 390 (783)
+|++||++|++.|.++|+|++. ++.++++|| +||||||++|++... +|++.
T Consensus 1 ~y~~Ql~~K~~~v~~~l~r~~~---------------------------~~~~v~~s~-~~~YRnr~~~~~~~~-~g~~~ 51 (353)
T TIGR02143 1 QYTAQLAEKVSRLKDLFAPFDA---------------------------PEPEVFESP-DKHYRMRAEFRIWHE-GDDLY 51 (353)
T ss_pred ChHHHHHHHHHHHHHHHHhcCC---------------------------CcCCCcCCc-cccccceEEEEEEec-CCcEE
Confidence 6999999999999999999751 234678888 999999999999532 46677
Q ss_pred EeeeccccCCCcceeeCCCCCcCCCHHHHHHHHHHHHHHHhCCCCcccccccCCcceEEEEeecCCCCCCCccccceecc
Q 003969 391 VGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVENLEVNI 470 (783)
Q Consensus 391 vGF~~g~~~~gs~~Vv~~~~C~iis~~l~~i~~~~~~~l~~s~l~~yd~~~~~G~wR~L~VR~s~~~~~~~~~~~~~~~~ 470 (783)
+||+ ..++|.|+++.+|+++++.++.++..+++++.. |+...+.| +++..+.+ .
T Consensus 52 ~G~~----~~~s~~iv~i~~C~i~~~~i~~~~~~~~~~l~~-----~~~~~~~~--~~~~~~~~-~-------------- 105 (353)
T TIGR02143 52 YAMF----DQQTKSKIRVDQFPAASELINRLMPALIAALRQ-----NPALRHKL--FQVDFLTT-L-------------- 105 (353)
T ss_pred EEEE----eCCCCCeEECCCCcCCCHHHHHHHHHHHHHHHh-----CCccccee--EEEEEEec-C--------------
Confidence 8986 678999999999999999999999999888764 33223333 22222211 1
Q ss_pred cccccceEEEEEEecCCCcchhhhhHHHHHHHHHHHhccccCCCCCCceEEEEEccCCCccccCCCCCceeccCCCCCCC
Q 003969 471 SEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGE 550 (783)
Q Consensus 471 ~~~~~gevmliv~v~~~~l~~~~~~~~~~~L~~~~~~~~~~~~p~~~v~sl~~q~~~~~sn~~~~d~~~~~l~~~~~~g~ 550 (783)
.|++||+++ ....+.. ....+...+.. .. +.+ . ++.. .+
T Consensus 106 ----~~~~~v~l~-~~~~~~~-----~~~~~~~~~~~----~~--~~~-~--~~~~--------~~-------------- 144 (353)
T TIGR02143 106 ----SGEALVSLL-YHKQLDD-----EWRQAAEALKD----IK--LNV-N--LIGR--------AR-------------- 144 (353)
T ss_pred ----CCCEEEEEE-eCCcccH-----HHHHHHHHHHH----hC--Cce-E--EEEc--------CC--------------
Confidence 256887774 3222211 11111111110 00 001 1 1100 00
Q ss_pred CCccccccccceEEee--CC--eEEEECCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEE
Q 003969 551 PEESNDVVEARIHDSI--SN--LRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMV 626 (783)
Q Consensus 551 ~~~~~l~G~~~I~E~i--~g--l~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~V 626 (783)
+..+++|.+++++.+ +| +.|+++|++|||+|+.+++.|+.++.+++...+ .+|||||||+|+|+++|++.+++|
T Consensus 145 -~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~F~Q~N~~~~~~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~~~v 222 (353)
T TIGR02143 145 -KKKIVLDQDYVDETLPVAGREFIYRQVENSFTQPNAAVNIKMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQNFRRV 222 (353)
T ss_pred -CcEEEcCCCEEEEEEecCCeEEEEEECCCCcccCCHHHHHHHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhCCEE
Confidence 012346888999988 67 899999999999999999999999999886433 469999999999999999999999
Q ss_pred EEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHH
Q 003969 627 IGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664 (783)
Q Consensus 627 igVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~~ 664 (783)
+|||+++.|++.|++|++.|++.|++|+++|+++++..
T Consensus 223 ~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~ 260 (353)
T TIGR02143 223 LATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQA 260 (353)
T ss_pred EEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHH
Confidence 99999999999999999999999999999999998864
No 9
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=100.00 E-value=6.1e-33 Score=301.82 Aligned_cols=266 Identities=22% Similarity=0.330 Sum_probs=205.7
Q ss_pred CCcceEeeeccccCCCcceeeCCCCCcCCCHHHHHHHHHHHHHHHhCCCCcccccccCCcceEEEEeecCCCCCCCcccc
Q 003969 386 QAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKPLDVEN 465 (783)
Q Consensus 386 ~G~~~vGF~~g~~~~gs~~Vv~~~~C~iis~~l~~i~~~~~~~l~~s~l~~yd~~~~~G~wR~L~VR~s~~~~~~~~~~~ 465 (783)
.++..+||+ +.++ .++++.+||++++.+++++..++++++++++++|++..++|+||++++|.+..
T Consensus 7 ~~~~~~G~~----~~~~-~~v~i~~C~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~lr~~~ir~~~~--------- 72 (315)
T PRK03522 7 VERPLLGIL----HRDG-TPVDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQS--------- 72 (315)
T ss_pred cCccEEeEE----cCCC-cEEcCCCCcCCCHHHHHHHHHHHHHHHHcCCCCCcCCCCCceeeEEEEEeecC---------
Confidence 356789997 3433 34899999999999999999999999999999999999999999999997432
Q ss_pred ceecccccccceEEEEEEecCCCcchhhhhHHHHHHHHHHHhccccCCCCCCceEEEEEccCCCccccCCCCCceeccCC
Q 003969 466 LEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIP 545 (783)
Q Consensus 466 ~~~~~~~~~~gevmliv~v~~~~l~~~~~~~~~~~L~~~~~~~~~~~~p~~~v~sl~~q~~~~~sn~~~~d~~~~~l~~~ 545 (783)
.|++||++........+ ....+.+.+.. ..+. +.++++..+....+....
T Consensus 73 ---------~~~~~v~l~~~~~~~~~-----~~~~~~~~~~~----~~~~--~~~v~~~~~~~~~~~~~g---------- 122 (315)
T PRK03522 73 ---------DGELMLRFVLRSETKLA-----RLRRALPWLQA----QLPQ--LKVISVNIQPVHMAILEG---------- 122 (315)
T ss_pred ---------CCCEEEEEEECCCccch-----hHHHHHHHHHH----HCCC--CEEEEEEECCCCCCcccC----------
Confidence 25788877544321101 11222222221 1122 445544332222111111
Q ss_pred CCCCCCCccccccccceEEeeCCeEEEECCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCE
Q 003969 546 KADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGM 625 (783)
Q Consensus 546 ~~~g~~~~~~l~G~~~I~E~i~gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~ 625 (783)
.+...++|..+++|.++|+.|+++|.+|||+|+.+++.|+..+.+++...++.+|||+|||+|.+++.|++.+.+
T Consensus 123 -----~~~~~l~g~~~~~~~~~~~~~~~~~~sF~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~~ 197 (315)
T PRK03522 123 -----EEEIFLTEQQALPERFNGVPLFIRPQSFFQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGMQ 197 (315)
T ss_pred -----CceEEEeCCCeEEEEECCEEEEECCCeeeecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCCE
Confidence 112345688999999999999999999999999999999999999987556789999999999999999999899
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHHhhhcCCCcccccccccCCchhhhhhhhccCCCCCCCCCC
Q 003969 626 VIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENE 705 (783)
Q Consensus 626 VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~~l~~~~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (783)
|+|||+++.|++.|++|++.+++.|++|+++|+.+++....
T Consensus 198 V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~--------------------------------------- 238 (315)
T PRK03522 198 LTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQG--------------------------------------- 238 (315)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcC---------------------------------------
Confidence 99999999999999999999999899999999988653210
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCccccccccccCCCCCCCCCCceEEEECCCCCCCcHHHHHHHHhccCCCcEEEe
Q 003969 706 GCSGQDPENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRLLHI 782 (783)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~ivDPPR~Gl~~~vi~~lr~~~~~~rlvYV 782 (783)
.+| +++|+||||.|+++.++++|... .+++||||
T Consensus 239 ----------------------------------------~~~--D~Vv~dPPr~G~~~~~~~~l~~~-~~~~ivyv 272 (315)
T PRK03522 239 ----------------------------------------EVP--DLVLVNPPRRGIGKELCDYLSQM-APRFILYS 272 (315)
T ss_pred ----------------------------------------CCC--eEEEECCCCCCccHHHHHHHHHc-CCCeEEEE
Confidence 024 89999999999999999999986 88999998
No 10
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.64 E-value=1.6e-15 Score=155.05 Aligned_cols=133 Identities=20% Similarity=0.304 Sum_probs=102.3
Q ss_pred eCCeEEEECCCccccCCHHHHHHHHHHHhhhcc-CCCCCeEEEecCCcCHHHHH-HhhhCCEEEEEeCCHHHHHHHHHHH
Q 003969 566 ISNLRFCISPTAFFQVNTLAAEKLYSLGGDWAD-LGPDTLLFDVCCGTGTIGLT-LAHRVGMVIGIEMNASAVSDAHRNA 643 (783)
Q Consensus 566 i~gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~-~~~g~~VLDLgCGtGti~l~-LA~~~~~VigVE~s~~AIe~Ak~Na 643 (783)
+.|+++.+.++..+. ...+.++..+..++. ...+.+|||||||+|.+++. +++.+.+|++||+++.+++.|++|+
T Consensus 20 ~~g~~l~~~~~~~~R---p~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl 96 (199)
T PRK10909 20 WRGRKLPVPDSPGLR---PTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNL 96 (199)
T ss_pred cCCCEeCCCCCCCcC---cCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHH
Confidence 367788776654443 333344444444332 23567999999999999995 5666789999999999999999999
Q ss_pred HHcCCCcEEEEEccHHHHHHHHHhhhcCCCcccccccccCCchhhhhhhhccCCCCCCCCCCCCCCCCCCCCccCCCCCC
Q 003969 644 EINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCPE 723 (783)
Q Consensus 644 ~~ngl~nv~f~~gDaed~l~~l~~~~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (783)
+.+++.+++++++|+.+.+... .
T Consensus 97 ~~~~~~~v~~~~~D~~~~l~~~-~-------------------------------------------------------- 119 (199)
T PRK10909 97 ATLKAGNARVVNTNALSFLAQP-G-------------------------------------------------------- 119 (199)
T ss_pred HHhCCCcEEEEEchHHHHHhhc-C--------------------------------------------------------
Confidence 9999989999999998765321 0
Q ss_pred CCCCCCccccccccccCCCCCCCCCCceEEEECCC-CCCCcHHHHHHHHhc--cCCCcEEEe
Q 003969 724 GSGKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPP-RGGLHPTVIKILRTH--ARLQRLLHI 782 (783)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~ivDPP-R~Gl~~~vi~~lr~~--~~~~rlvYV 782 (783)
..| +++|+||| |.|+.+.++..|... -.+.+||||
T Consensus 120 ----------------------~~f--DlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~v 157 (199)
T PRK10909 120 ----------------------TPH--NVVFVDPPFRKGLLEETINLLEDNGWLADEALIYV 157 (199)
T ss_pred ----------------------CCc--eEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEE
Confidence 025 89999999 999999999999873 367999997
No 11
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.52 E-value=1.2e-13 Score=154.14 Aligned_cols=89 Identities=19% Similarity=0.233 Sum_probs=79.0
Q ss_pred CCccccCCHHHHHHHHHHHhhhccCC-CCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcE
Q 003969 575 PTAFFQVNTLAAEKLYSLGGDWADLG-PDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNC 651 (783)
Q Consensus 575 p~sFfQvN~~~ae~L~~~i~~~l~~~-~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~nv 651 (783)
..+|||+|...+..|...+++++... ++.+|||+|||+|.+++.++... .+|+++|+++.|++.+++|++.|++.++
T Consensus 30 ~~vFyqp~~~~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~ 109 (382)
T PRK04338 30 APVFYNPRMELNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENE 109 (382)
T ss_pred CCeeeCccccchhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCce
Confidence 46899999999999999888877533 34689999999999999998865 4999999999999999999999999999
Q ss_pred EEEEccHHHHHH
Q 003969 652 RFVCAKAEDVMG 663 (783)
Q Consensus 652 ~f~~gDaed~l~ 663 (783)
+++++|+..++.
T Consensus 110 ~v~~~Da~~~l~ 121 (382)
T PRK04338 110 KVFNKDANALLH 121 (382)
T ss_pred EEEhhhHHHHHh
Confidence 999999988764
No 12
>PLN03213 repressor of silencing 3; Provisional
Probab=99.41 E-value=4.2e-13 Score=146.90 Aligned_cols=83 Identities=13% Similarity=0.188 Sum_probs=74.9
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCH--HHHHHHHHHHcCCccCCceeEEEecC
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESV--EQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~--Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
...+++||||||++.+++++|+.+|.+|| |..+.|++..+||||||+|.++ +++++||+.|||.+|+||.|+|+.|+
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 45678999999999999999999999996 8888888755699999999987 78999999999999999999999999
Q ss_pred CCCccc
Q 003969 239 PRSFDK 244 (783)
Q Consensus 239 pr~~~k 244 (783)
|.-+.+
T Consensus 87 P~YLeR 92 (759)
T PLN03213 87 EHYLAR 92 (759)
T ss_pred HHHHHH
Confidence 986654
No 13
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.39 E-value=4.4e-12 Score=134.30 Aligned_cols=93 Identities=24% Similarity=0.356 Sum_probs=79.2
Q ss_pred eeCCeEEEECCCccccCCHHHHHHHHHHHhhhccCC-CCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHH
Q 003969 565 SISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG-PDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHR 641 (783)
Q Consensus 565 ~i~gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~-~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~ 641 (783)
.|+|++|.++|++|+ |+..++.|++.++.++... ...+|||+|||+|.+++.+++.. .+|+|+|+++.|++.|++
T Consensus 51 ~f~g~~~~v~~~vf~--pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~ 128 (251)
T TIGR03704 51 EFCGLRIAVDPGVFV--PRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARR 128 (251)
T ss_pred eEcCeEEEECCCCcC--CCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence 457899999999996 7778999999998876532 34589999999999999999764 489999999999999999
Q ss_pred HHHHcCCCcEEEEEccHHHHH
Q 003969 642 NAEINGIKNCRFVCAKAEDVM 662 (783)
Q Consensus 642 Na~~ngl~nv~f~~gDaed~l 662 (783)
|++.+++ +|+++|+.+.+
T Consensus 129 N~~~~~~---~~~~~D~~~~l 146 (251)
T TIGR03704 129 NLADAGG---TVHEGDLYDAL 146 (251)
T ss_pred HHHHcCC---EEEEeechhhc
Confidence 9998874 78999987654
No 14
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=8.1e-13 Score=139.44 Aligned_cols=81 Identities=20% Similarity=0.359 Sum_probs=73.6
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec--cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCC
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK--KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRS 241 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~--~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr~ 241 (783)
.-+|||.|||+.+.+.||+.+|++|| |..+.|+. +.|||||||||++.++|++|-++|||..+.||+|.|+.|.+|-
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATarV 175 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATARV 175 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchhh
Confidence 45799999999999999999999997 66677776 6789999999999999999999999999999999999999996
Q ss_pred cccc
Q 003969 242 FDKN 245 (783)
Q Consensus 242 ~~k~ 245 (783)
..||
T Consensus 176 ~n~K 179 (376)
T KOG0125|consen 176 HNKK 179 (376)
T ss_pred ccCC
Confidence 5544
No 15
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.36 E-value=3.4e-12 Score=124.23 Aligned_cols=81 Identities=16% Similarity=0.254 Sum_probs=72.0
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
....-+|||+|||+.+++++|+++|+++| |...++++ ++++|||||+|.++|+|++||+.|||..++|+.|+|..
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34456899999999999999999999995 77777765 57899999999999999999999999999999999999
Q ss_pred cCCCCc
Q 003969 237 VVPRSF 242 (783)
Q Consensus 237 A~pr~~ 242 (783)
|.+++.
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 877643
No 16
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.35 E-value=1.3e-11 Score=133.00 Aligned_cols=95 Identities=19% Similarity=0.324 Sum_probs=78.3
Q ss_pred eeCCeEEEECCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHH
Q 003969 565 SISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRN 642 (783)
Q Consensus 565 ~i~gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~N 642 (783)
.|.|+.|.++|++|+ .++...+.+...+..++...++.+|||+|||+|.+++.+++.. .+|+|+|+++.|++.|++|
T Consensus 86 ~f~g~~f~v~~~vli-pr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n 164 (284)
T TIGR03533 86 WFAGLEFYVDERVLI-PRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEIN 164 (284)
T ss_pred eecCcEEEECCCCcc-CCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Confidence 357899999999998 5666555555555445533345789999999999999999874 5999999999999999999
Q ss_pred HHHcCCC-cEEEEEccHHH
Q 003969 643 AEINGIK-NCRFVCAKAED 660 (783)
Q Consensus 643 a~~ngl~-nv~f~~gDaed 660 (783)
++.+++. +++|+++|+.+
T Consensus 165 ~~~~~~~~~i~~~~~D~~~ 183 (284)
T TIGR03533 165 IERHGLEDRVTLIQSDLFA 183 (284)
T ss_pred HHHcCCCCcEEEEECchhh
Confidence 9999984 69999999854
No 17
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.31 E-value=4.6e-11 Score=121.45 Aligned_cols=95 Identities=15% Similarity=0.110 Sum_probs=74.7
Q ss_pred CCeEEEECCCccc-cCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHH
Q 003969 567 SNLRFCISPTAFF-QVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAE 644 (783)
Q Consensus 567 ~gl~f~isp~sFf-QvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~ 644 (783)
.|.++...++.+- .+....-+.+++.+...+ .+.+|||||||+|.+|+.++.++ .+|++||.++.+++.+++|++
T Consensus 17 kg~~l~~p~~~~~rpt~~~vrea~f~~l~~~~---~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~ 93 (189)
T TIGR00095 17 GGRLLKLPPGGSTRPTTRVVRELFFNILRPEI---QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLA 93 (189)
T ss_pred CCcccCCCCCCCCCCchHHHHHHHHHHHHHhc---CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 3455555555552 344455566777665432 57899999999999999999885 599999999999999999999
Q ss_pred HcCCC-cEEEEEccHHHHHHH
Q 003969 645 INGIK-NCRFVCAKAEDVMGS 664 (783)
Q Consensus 645 ~ngl~-nv~f~~gDaed~l~~ 664 (783)
.+++. +++++++|+.+++..
T Consensus 94 ~~~~~~~~~~~~~D~~~~l~~ 114 (189)
T TIGR00095 94 LLKSGEQAEVVRNSALRALKF 114 (189)
T ss_pred HhCCcccEEEEehhHHHHHHH
Confidence 99995 699999999887754
No 18
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.30 E-value=3e-11 Score=131.56 Aligned_cols=95 Identities=20% Similarity=0.327 Sum_probs=77.0
Q ss_pred eCCeEEEECCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHH
Q 003969 566 ISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNA 643 (783)
Q Consensus 566 i~gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na 643 (783)
|.|+.|+++|++|+ .++...+.+...+..++......+|||+|||+|.+++.+++.. .+|+|+|+++.|++.|++|+
T Consensus 99 F~g~~f~v~~~vli-pr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~ 177 (307)
T PRK11805 99 FCGLEFYVDERVLV-PRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINI 177 (307)
T ss_pred EcCcEEEECCCCcC-CCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH
Confidence 46899999999998 5655555555544444442223689999999999999999874 59999999999999999999
Q ss_pred HHcCCC-cEEEEEccHHHH
Q 003969 644 EINGIK-NCRFVCAKAEDV 661 (783)
Q Consensus 644 ~~ngl~-nv~f~~gDaed~ 661 (783)
+.+++. +++|+++|+.+.
T Consensus 178 ~~~~l~~~i~~~~~D~~~~ 196 (307)
T PRK11805 178 ERHGLEDRVTLIESDLFAA 196 (307)
T ss_pred HHhCCCCcEEEEECchhhh
Confidence 999985 599999998653
No 19
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.28 E-value=8.5e-12 Score=137.19 Aligned_cols=79 Identities=16% Similarity=0.267 Sum_probs=71.5
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 163 DVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
..++.|||+|||+.+++++|+++|++|| |..++|.+ ++++|||||+|.+.++|.+||+.|||+.++||.|+|..+
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 3456799999999999999999999995 88888876 578999999999999999999999999999999999988
Q ss_pred CCCC
Q 003969 238 VPRS 241 (783)
Q Consensus 238 ~pr~ 241 (783)
..|.
T Consensus 347 ~~~~ 350 (352)
T TIGR01661 347 TNKA 350 (352)
T ss_pred cCCC
Confidence 6553
No 20
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.28 E-value=1.1e-11 Score=103.65 Aligned_cols=66 Identities=29% Similarity=0.475 Sum_probs=60.0
Q ss_pred EEEeCCCcccCHHHHHHHhhhcc-ceeeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeE
Q 003969 168 KCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLK 233 (783)
Q Consensus 168 i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~ 233 (783)
|||+|||..+++++|+++|+++| +....+.. ++++|||||+|.+.++|++|++.|||+.|+|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999996 55666665 56789999999999999999999999999999986
No 21
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.25 E-value=7.4e-11 Score=119.35 Aligned_cols=98 Identities=17% Similarity=0.210 Sum_probs=72.2
Q ss_pred CCeEEEECCCccc-cCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHh-hhCCEEEEEeCCHHHHHHHHHHHH
Q 003969 567 SNLRFCISPTAFF-QVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLA-HRVGMVIGIEMNASAVSDAHRNAE 644 (783)
Q Consensus 567 ~gl~f~isp~sFf-QvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA-~~~~~VigVE~s~~AIe~Ak~Na~ 644 (783)
.|.++...++... .+....-+.|++++... . ..|.+|||||||||.+|+.+. +.+++|+.||.++.++...++|++
T Consensus 9 kgr~l~~p~~~~~RPT~drvrealFniL~~~-~-~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~ 86 (183)
T PF03602_consen 9 KGRKLKTPKGDNTRPTTDRVREALFNILQPR-N-LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLE 86 (183)
T ss_dssp TT-EEE-TT--TS-SSSHHHHHHHHHHHHCH---HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHH
T ss_pred CCCEecCCCCCCcCCCcHHHHHHHHHHhccc-c-cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHH
Confidence 3566666554443 34556778888888876 1 358899999999999999555 446899999999999999999999
Q ss_pred HcCCCc-EEEEEccHHHHHHHHH
Q 003969 645 INGIKN-CRFVCAKAEDVMGSLL 666 (783)
Q Consensus 645 ~ngl~n-v~f~~gDaed~l~~l~ 666 (783)
..++.+ +.++++|+..++..+.
T Consensus 87 ~l~~~~~~~v~~~d~~~~l~~~~ 109 (183)
T PF03602_consen 87 KLGLEDKIRVIKGDAFKFLLKLA 109 (183)
T ss_dssp HHT-GGGEEEEESSHHHHHHHHH
T ss_pred HhCCCcceeeeccCHHHHHHhhc
Confidence 999965 9999999999987764
No 22
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.25 E-value=5.1e-11 Score=118.74 Aligned_cols=87 Identities=30% Similarity=0.388 Sum_probs=73.6
Q ss_pred eEEEECCCccccCCHH-HHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCC--EEEEEeCCHHHHHHHHHHHHH
Q 003969 569 LRFCISPTAFFQVNTL-AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG--MVIGIEMNASAVSDAHRNAEI 645 (783)
Q Consensus 569 l~f~isp~sFfQvN~~-~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~--~VigVE~s~~AIe~Ak~Na~~ 645 (783)
++|...|+.|-+.... .+..|.+.+... .+.+|||||||+|.+++.+++... +|+++|+++.|++.|++|++.
T Consensus 2 ~~~~~~~gvFs~~~~d~~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~ 77 (170)
T PF05175_consen 2 LEFITHPGVFSPPRLDAGTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAER 77 (170)
T ss_dssp EEEEEETTSTTTTSHHHHHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHH
T ss_pred EEEEECCCeeCCCCCCHHHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 6799999999776664 445555555543 567899999999999999999864 599999999999999999999
Q ss_pred cCCCcEEEEEccHH
Q 003969 646 NGIKNCRFVCAKAE 659 (783)
Q Consensus 646 ngl~nv~f~~gDae 659 (783)
|++.+++++.+|+.
T Consensus 78 n~~~~v~~~~~d~~ 91 (170)
T PF05175_consen 78 NGLENVEVVQSDLF 91 (170)
T ss_dssp TTCTTEEEEESSTT
T ss_pred cCcccccccccccc
Confidence 99988999999864
No 23
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.25 E-value=1.9e-11 Score=126.17 Aligned_cols=97 Identities=19% Similarity=0.308 Sum_probs=83.4
Q ss_pred EeeCCeEEEECCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCC---EEEEEeCCHHHHHHHH
Q 003969 564 DSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG---MVIGIEMNASAVSDAH 640 (783)
Q Consensus 564 E~i~gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~---~VigVE~s~~AIe~Ak 640 (783)
+.+.++-|.-.|-.|.+.+......++..+++++.+.++.+|||+|||+|.+++.|++.+. +|++||+++++++.|+
T Consensus 40 ~~~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~ 119 (215)
T TIGR00080 40 EHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAE 119 (215)
T ss_pred chhHhhCcCCCCcccCCCCEechHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Confidence 3334556666777887777767777888888888888999999999999999999999864 4999999999999999
Q ss_pred HHHHHcCCCcEEEEEccHHH
Q 003969 641 RNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 641 ~Na~~ngl~nv~f~~gDaed 660 (783)
+|++.+++.|++++++|+.+
T Consensus 120 ~~~~~~g~~~v~~~~~d~~~ 139 (215)
T TIGR00080 120 RRLRKLGLDNVIVIVGDGTQ 139 (215)
T ss_pred HHHHHCCCCCeEEEECCccc
Confidence 99999999999999999864
No 24
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=1.6e-11 Score=132.09 Aligned_cols=112 Identities=19% Similarity=0.242 Sum_probs=92.0
Q ss_pred eeCCeEEEECCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCC--EEEEEeCCHHHHHHHHHH
Q 003969 565 SISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG--MVIGIEMNASAVSDAHRN 642 (783)
Q Consensus 565 ~i~gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~--~VigVE~s~~AIe~Ak~N 642 (783)
.++|+.|.++++.+ +.+.-++.|...++..+..... +|||||||+|.+++.+++.+. .|+|+|+|+.|++.|++|
T Consensus 77 ~f~gl~~~v~~~vl--iPr~dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~N 153 (280)
T COG2890 77 EFGGLRFKVDEGVL--IPRPDTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALAREN 153 (280)
T ss_pred eecceeeeeCCCce--ecCCchHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHH
Confidence 46899999999999 7777788888877633332222 799999999999999999975 999999999999999999
Q ss_pred HHHcCCCcEEEEEccHHHHHHHHHhhhcCCCcccccccccCCchhhhhhhhccCCCC
Q 003969 643 AEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRD 699 (783)
Q Consensus 643 a~~ngl~nv~f~~gDaed~l~~l~~~~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (783)
+..||+.++.++.+|+.+-+.. . -|+.++||+|.+.+
T Consensus 154 a~~~~l~~~~~~~~dlf~~~~~---~-----------------fDlIVsNPPYip~~ 190 (280)
T COG2890 154 AERNGLVRVLVVQSDLFEPLRG---K-----------------FDLIVSNPPYIPAE 190 (280)
T ss_pred HHHcCCccEEEEeeecccccCC---c-----------------eeEEEeCCCCCCCc
Confidence 9999997777888876654432 2 26779999999998
No 25
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.21 E-value=2.2e-10 Score=127.69 Aligned_cols=100 Identities=18% Similarity=0.249 Sum_probs=78.7
Q ss_pred eEEeeCCeEEEECCC-----ccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCC-EEEEEeCCHHH
Q 003969 562 IHDSISNLRFCISPT-----AFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG-MVIGIEMNASA 635 (783)
Q Consensus 562 I~E~i~gl~f~isp~-----sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~-~VigVE~s~~A 635 (783)
+.-.-.|.+|.+... +||--.+..- .++.+++ .|.+||||||-||.|++.+|..++ +|++||+|..+
T Consensus 180 ~~i~E~g~kf~v~~~~g~kTGfFlDqR~~R----~~l~~~~---~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~a 252 (393)
T COG1092 180 VVIEENGVKFLVDLVDGLKTGFFLDQRDNR----RALGELA---AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRA 252 (393)
T ss_pred EEEEeCCeEEEEecCCcccceeeHHhHHHH----HHHhhhc---cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHH
Confidence 333447899998865 5553333221 2233333 388999999999999999999875 99999999999
Q ss_pred HHHHHHHHHHcCCC--cEEEEEccHHHHHHHHHhh
Q 003969 636 VSDAHRNAEINGIK--NCRFVCAKAEDVMGSLLKD 668 (783)
Q Consensus 636 Ie~Ak~Na~~ngl~--nv~f~~gDaed~l~~l~~~ 668 (783)
++.|++|+++||++ .+.|+++|+.+++.....+
T Consensus 253 l~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~ 287 (393)
T COG1092 253 LEWARENAELNGLDGDRHRFIVGDVFKWLRKAERR 287 (393)
T ss_pred HHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhc
Confidence 99999999999994 4899999999999987654
No 26
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.19 E-value=4e-11 Score=131.87 Aligned_cols=77 Identities=25% Similarity=0.421 Sum_probs=70.0
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~p 239 (783)
..+|||+|||+.+++++|+++|+++| |..+++++ ++++|||||+|.+.++|++||+.|||+.+.|++|+|..++|
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 45799999999999999999999996 77777765 57899999999999999999999999999999999998876
Q ss_pred CC
Q 003969 240 RS 241 (783)
Q Consensus 240 r~ 241 (783)
+.
T Consensus 83 ~~ 84 (352)
T TIGR01661 83 SS 84 (352)
T ss_pred cc
Confidence 53
No 27
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.17 E-value=7.5e-11 Score=127.06 Aligned_cols=118 Identities=19% Similarity=0.300 Sum_probs=94.5
Q ss_pred eeCCeEEEECCCccccCCHHHHHHHHHHHhhhcc-CCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHH
Q 003969 565 SISNLRFCISPTAFFQVNTLAAEKLYSLGGDWAD-LGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHR 641 (783)
Q Consensus 565 ~i~gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~-~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~ 641 (783)
.|.|+.|.++++.|. ++..++.|+..++..+. ..+..+|||+|||+|.+++.++... .+|+|+|+++.|++.|++
T Consensus 79 ~f~g~~f~v~~~vli--Pr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~ 156 (284)
T TIGR00536 79 EFYGLEFFVNEHVLI--PRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEE 156 (284)
T ss_pred eEcCeEEEECCCCcC--CCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence 457899999999995 66777888888776542 2223689999999999999999875 599999999999999999
Q ss_pred HHHHcCCCc-EEEEEccHHHHHHHHHhhhcCCCcccccccccCCchhhhhhhhccCCCCCCCC
Q 003969 642 NAEINGIKN-CRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPE 703 (783)
Q Consensus 642 Na~~ngl~n-v~f~~gDaed~l~~l~~~~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (783)
|++.+++.+ ++|+++|+.+.+.. ..-|+.++||++.+..+++.
T Consensus 157 n~~~~~~~~~v~~~~~d~~~~~~~-------------------~~fDlIvsNPPyi~~~~~~~ 200 (284)
T TIGR00536 157 NAEKNQLEHRVEFIQSNLFEPLAG-------------------QKIDIIVSNPPYIDEEDLAD 200 (284)
T ss_pred HHHHcCCCCcEEEEECchhccCcC-------------------CCccEEEECCCCCCcchhhc
Confidence 999999964 99999998653211 01367889999988877654
No 28
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.17 E-value=6.3e-10 Score=125.13 Aligned_cols=98 Identities=10% Similarity=0.185 Sum_probs=73.9
Q ss_pred eEEeeCCeEEEECCCc-----cccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh-CCEEEEEeCCHHH
Q 003969 562 IHDSISNLRFCISPTA-----FFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASA 635 (783)
Q Consensus 562 I~E~i~gl~f~isp~s-----FfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~-~~~VigVE~s~~A 635 (783)
+.-.-+|++|.+.... ||=-.+... .++..+ .++.+|||+|||+|.+++.++.. +.+|++||+++.|
T Consensus 183 ~~v~E~g~~f~vdl~~g~ktG~flDqr~~R----~~~~~~---~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~a 255 (396)
T PRK15128 183 LPIEEHGMKLLVDIQGGHKTGYYLDQRDSR----LATRRY---VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEA 255 (396)
T ss_pred EEEEECCEEEEEecccccccCcChhhHHHH----HHHHHh---cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHH
Confidence 4344489999998653 442212111 112222 24789999999999999987665 4599999999999
Q ss_pred HHHHHHHHHHcCCC--cEEEEEccHHHHHHHHH
Q 003969 636 VSDAHRNAEINGIK--NCRFVCAKAEDVMGSLL 666 (783)
Q Consensus 636 Ie~Ak~Na~~ngl~--nv~f~~gDaed~l~~l~ 666 (783)
++.|++|+..|++. +++|+++|+.+++..+.
T Consensus 256 l~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~ 288 (396)
T PRK15128 256 LDIARQNVELNKLDLSKAEFVRDDVFKLLRTYR 288 (396)
T ss_pred HHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHH
Confidence 99999999999985 79999999999887653
No 29
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.16 E-value=3.6e-10 Score=135.78 Aligned_cols=101 Identities=15% Similarity=0.187 Sum_probs=75.4
Q ss_pred ceEEeeCCeEEEECCCccccCCHHHHHH-HHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHH
Q 003969 561 RIHDSISNLRFCISPTAFFQVNTLAAEK-LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSD 638 (783)
Q Consensus 561 ~I~E~i~gl~f~isp~sFfQvN~~~ae~-L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~ 638 (783)
.+.-.-+|++|.++...+..+....-.. ...++..+. ++.+|||||||+|.+++.+++.+ .+|++||+++.|++.
T Consensus 500 ~~~v~e~g~~f~v~~~~~~~tG~flDqr~~R~~~~~~~---~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~ 576 (702)
T PRK11783 500 FLEVTEYGAKLLVNLTDYLDTGLFLDHRPTRRMIGQMA---KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEW 576 (702)
T ss_pred eEEEEECCEEEEEEcCCCCcceECHHHHHHHHHHHHhc---CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence 3334448999999976543322111111 122233332 47899999999999999999875 579999999999999
Q ss_pred HHHHHHHcCCC--cEEEEEccHHHHHHH
Q 003969 639 AHRNAEINGIK--NCRFVCAKAEDVMGS 664 (783)
Q Consensus 639 Ak~Na~~ngl~--nv~f~~gDaed~l~~ 664 (783)
|++|++.||+. +++|+++|+.+++..
T Consensus 577 a~~N~~~ng~~~~~v~~i~~D~~~~l~~ 604 (702)
T PRK11783 577 AERNFALNGLSGRQHRLIQADCLAWLKE 604 (702)
T ss_pred HHHHHHHhCCCccceEEEEccHHHHHHH
Confidence 99999999995 699999999987753
No 30
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.15 E-value=1.1e-10 Score=128.99 Aligned_cols=78 Identities=24% Similarity=0.338 Sum_probs=70.4
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
.....+|||+|||+.+++++|+++|++++ |..++|++ ++++|||||+|.++|+|++||+.|||..+.|++|+|..
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 45567899999999999999999999995 77777765 57889999999999999999999999999999999987
Q ss_pred cCC
Q 003969 237 VVP 239 (783)
Q Consensus 237 A~p 239 (783)
|+|
T Consensus 184 a~p 186 (346)
T TIGR01659 184 ARP 186 (346)
T ss_pred ccc
Confidence 755
No 31
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.13 E-value=9.6e-10 Score=110.74 Aligned_cols=96 Identities=18% Similarity=0.189 Sum_probs=75.4
Q ss_pred CeEEEECCCcc-ccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh-CCEEEEEeCCHHHHHHHHHHHHH
Q 003969 568 NLRFCISPTAF-FQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEI 645 (783)
Q Consensus 568 gl~f~isp~sF-fQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~-~~~VigVE~s~~AIe~Ak~Na~~ 645 (783)
|..+.+.++.- =.+....-+.|++++... ...|.++||||+|+|.+|+..+.+ +.+|+.||.+..++..+++|++.
T Consensus 11 gr~L~~p~~~~~RPT~drVREalFNil~~~--~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~ 88 (187)
T COG0742 11 GRKLKTPDGPGTRPTTDRVREALFNILAPD--EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKA 88 (187)
T ss_pred CCcccCCCCCCcCCCchHHHHHHHHhcccc--ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHH
Confidence 45555555433 334556677788887762 135899999999999999966655 68999999999999999999999
Q ss_pred cCC-CcEEEEEccHHHHHHHH
Q 003969 646 NGI-KNCRFVCAKAEDVMGSL 665 (783)
Q Consensus 646 ngl-~nv~f~~gDaed~l~~l 665 (783)
.++ .+++++..|+..+++.+
T Consensus 89 l~~~~~~~~~~~da~~~L~~~ 109 (187)
T COG0742 89 LGLEGEARVLRNDALRALKQL 109 (187)
T ss_pred hCCccceEEEeecHHHHHHhc
Confidence 886 57999999999776654
No 32
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=6e-10 Score=111.54 Aligned_cols=81 Identities=20% Similarity=0.237 Sum_probs=66.2
Q ss_pred ccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEcc
Q 003969 579 FQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAK 657 (783)
Q Consensus 579 fQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gD 657 (783)
|.+....+..+...+. +-..-.|..|+|||||||.+++..+..+ .+|+|||++++|++.|++|+.. +..++.|+++|
T Consensus 24 Y~Tp~~~Aa~il~~a~-~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~d 101 (198)
T COG2263 24 YRTPAPLAAYILWVAY-LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE-LLGDVEFVVAD 101 (198)
T ss_pred cCCChHHHHHHHHHHH-HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh-hCCceEEEEcc
Confidence 3466666666665554 4455567899999999999999888875 7999999999999999999998 44579999999
Q ss_pred HHHH
Q 003969 658 AEDV 661 (783)
Q Consensus 658 aed~ 661 (783)
+.++
T Consensus 102 v~~~ 105 (198)
T COG2263 102 VSDF 105 (198)
T ss_pred hhhc
Confidence 8863
No 33
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.12 E-value=1.6e-10 Score=97.51 Aligned_cols=66 Identities=27% Similarity=0.435 Sum_probs=56.6
Q ss_pred EEEeCCCcccCHHHHHHHhhhcc-ceeeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeE
Q 003969 168 KCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLK 233 (783)
Q Consensus 168 i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~ 233 (783)
|||+|||+.++.++|+++|+.+| |....+.+ ++++|+|||+|.++++|++|++.++|..|+||.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999996 55555555 34689999999999999999999999999999985
No 34
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.12 E-value=2.6e-10 Score=127.72 Aligned_cols=91 Identities=20% Similarity=0.287 Sum_probs=79.9
Q ss_pred eeCCeEEEECCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHH
Q 003969 565 SISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRN 642 (783)
Q Consensus 565 ~i~gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~N 642 (783)
.|.|++|.++|+.| +++..++.++..++..+. ++.+|||+|||+|.+++.+++. ..+|+|+|+++.|++.|++|
T Consensus 219 ~F~G~~f~V~p~vL--IPRpeTE~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreN 294 (423)
T PRK14966 219 EFYGRRFAVNPNVL--IPRPETEHLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKN 294 (423)
T ss_pred eecCcEEEeCCCcc--CCCccHHHHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 36789999999999 488889999998887654 4568999999999999999875 46999999999999999999
Q ss_pred HHHcCCCcEEEEEccHHH
Q 003969 643 AEINGIKNCRFVCAKAED 660 (783)
Q Consensus 643 a~~ngl~nv~f~~gDaed 660 (783)
++.+++ +++|+++|+.+
T Consensus 295 a~~~g~-rV~fi~gDl~e 311 (423)
T PRK14966 295 AADLGA-RVEFAHGSWFD 311 (423)
T ss_pred HHHcCC-cEEEEEcchhc
Confidence 998886 79999999864
No 35
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.12 E-value=7.3e-10 Score=119.18 Aligned_cols=98 Identities=18% Similarity=0.242 Sum_probs=72.8
Q ss_pred eEEeeCCeEEEECCC-----ccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHH
Q 003969 562 IHDSISNLRFCISPT-----AFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASA 635 (783)
Q Consensus 562 I~E~i~gl~f~isp~-----sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~A 635 (783)
+.-..+|++|.+... +||--.+..- .++...+ .+.+|||+||-||.|+++++..+ .+|++||+|..|
T Consensus 86 ~~v~E~gl~f~v~l~~gqktGlFlDqR~nR----~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~a 158 (286)
T PF10672_consen 86 FTVEENGLKFRVDLTDGQKTGLFLDQRENR----KWVRKYA---KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRA 158 (286)
T ss_dssp EEEEETTEEEEEESSSSSSTSS-GGGHHHH----HHHHHHC---TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHH
T ss_pred eEEEECCEEEEEEcCCCCcceEcHHHHhhH----HHHHHHc---CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHH
Confidence 334558999999874 5554333322 2233332 57899999999999999888775 589999999999
Q ss_pred HHHHHHHHHHcCCC--cEEEEEccHHHHHHHHH
Q 003969 636 VSDAHRNAEINGIK--NCRFVCAKAEDVMGSLL 666 (783)
Q Consensus 636 Ie~Ak~Na~~ngl~--nv~f~~gDaed~l~~l~ 666 (783)
++.|++|+..||++ .++|+++|+.+++..+.
T Consensus 159 l~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~ 191 (286)
T PF10672_consen 159 LEWAKENAALNGLDLDRHRFIQGDVFKFLKRLK 191 (286)
T ss_dssp HHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHH
T ss_pred HHHHHHHHHHcCCCccceEEEecCHHHHHHHHh
Confidence 99999999999984 69999999999987653
No 36
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.11 E-value=3.1e-10 Score=104.87 Aligned_cols=62 Identities=29% Similarity=0.460 Sum_probs=57.6
Q ss_pred CCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHHHHH
Q 003969 602 DTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAEDVMG 663 (783)
Q Consensus 602 g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gDaed~l~ 663 (783)
|.+|||+|||+|++++.+++.. .+++|+|+++.+++.|+.|+..+++ .+++++++|+.+...
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~ 64 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPE 64 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHH
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchh
Confidence 5689999999999999999998 8999999999999999999999998 579999999988753
No 37
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.10 E-value=2.2e-10 Score=113.50 Aligned_cols=62 Identities=27% Similarity=0.554 Sum_probs=53.0
Q ss_pred CeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHHHHHH
Q 003969 603 TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAEDVMGS 664 (783)
Q Consensus 603 ~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gDaed~l~~ 664 (783)
+.|||+|||.|.-++.+|+.+.+|++||+++..++.|++|++..|+ ++|+|+++|+.+++..
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~ 63 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKR 63 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGG
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhh
Confidence 3699999999999999999999999999999999999999999998 5799999999996554
No 38
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.08 E-value=2.8e-10 Score=132.69 Aligned_cols=77 Identities=13% Similarity=0.284 Sum_probs=70.3
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~p 239 (783)
..+|||+|||+.+++++|+++|+.|| |..+++.+ ++++|||||.|.+.++|.+||+.|||++|+|+.|+|..|.+
T Consensus 204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred cceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 46899999999999999999999995 77777776 56899999999999999999999999999999999998876
Q ss_pred CC
Q 003969 240 RS 241 (783)
Q Consensus 240 r~ 241 (783)
.+
T Consensus 284 pP 285 (612)
T TIGR01645 284 PP 285 (612)
T ss_pred Cc
Confidence 54
No 39
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.05 E-value=5.4e-10 Score=117.34 Aligned_cols=73 Identities=16% Similarity=0.301 Sum_probs=65.7
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec-cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK-KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~-~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
..+|||+|||+.+++++|++||+.+| |..+.+.. +.++|||||+|.++++++.|| .|||..+.||.|+|..+.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEecc
Confidence 35799999999999999999999996 77777776 446799999999999999999 599999999999999874
No 40
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.05 E-value=2.3e-09 Score=112.15 Aligned_cols=92 Identities=23% Similarity=0.329 Sum_probs=77.0
Q ss_pred eCCeEEEECCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHH
Q 003969 566 ISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNA 643 (783)
Q Consensus 566 i~gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na 643 (783)
+++..|.+++..|. .+...+.++..+++.+. ..+.+|||+|||+|.+++.++... .+|+|+|+++.+++.|+.|+
T Consensus 55 ~~~~~~~~~~~~~~--p~~~~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~ 131 (251)
T TIGR03534 55 FYGLDFKVSPGVLI--PRPDTEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNA 131 (251)
T ss_pred EeceEEEECCCccc--CCCChHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 46788999999884 44456677777777654 234689999999999999999873 59999999999999999999
Q ss_pred HHcCCCcEEEEEccHHH
Q 003969 644 EINGIKNCRFVCAKAED 660 (783)
Q Consensus 644 ~~ngl~nv~f~~gDaed 660 (783)
..+++.++.++++|+.+
T Consensus 132 ~~~~~~~~~~~~~d~~~ 148 (251)
T TIGR03534 132 ARLGLDNVTFLQSDWFE 148 (251)
T ss_pred HHcCCCeEEEEECchhc
Confidence 99999889999999764
No 41
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.04 E-value=3.4e-10 Score=123.84 Aligned_cols=81 Identities=22% Similarity=0.256 Sum_probs=71.2
Q ss_pred CCCCC-CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccC-C
Q 003969 157 DGDGD-QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIG-N 229 (783)
Q Consensus 157 ~~~~~-~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~-G 229 (783)
+|++. ...+..||||.||+++.+++|.-||++.| |-..++++ |.+||||||||.+.|+|++||+.||+++++ |
T Consensus 74 ~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~G 153 (506)
T KOG0117|consen 74 GWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPG 153 (506)
T ss_pred cccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCC
Confidence 44443 34478999999999999999999999995 77788887 789999999999999999999999999996 8
Q ss_pred ceeEEEec
Q 003969 230 KTLKVANV 237 (783)
Q Consensus 230 r~L~V~~A 237 (783)
|.|.|...
T Consensus 154 K~igvc~S 161 (506)
T KOG0117|consen 154 KLLGVCVS 161 (506)
T ss_pred CEeEEEEe
Confidence 99998755
No 42
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.03 E-value=3.9e-09 Score=117.82 Aligned_cols=96 Identities=19% Similarity=0.199 Sum_probs=72.5
Q ss_pred eEEEEC--CCcccc----CCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh---CCEEEEEeCCHHHHHHH
Q 003969 569 LRFCIS--PTAFFQ----VNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDA 639 (783)
Q Consensus 569 l~f~is--p~sFfQ----vN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~---~~~VigVE~s~~AIe~A 639 (783)
.+|.+. ..+||- .|+...-.+++..........+-+|||++||+|.+|+.++.. +.+|+++|+++.|++.+
T Consensus 6 ~~i~~p~~~~vFYNP~~~~nRDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i 85 (374)
T TIGR00308 6 AEILVPKKETVFYNPRMQFNRDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESI 85 (374)
T ss_pred EEEEecCCCCcccCchhhccccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHH
Confidence 344442 457874 566555444443333222111348999999999999999986 37999999999999999
Q ss_pred HHHHHHcCCCcEEEEEccHHHHHHH
Q 003969 640 HRNAEINGIKNCRFVCAKAEDVMGS 664 (783)
Q Consensus 640 k~Na~~ngl~nv~f~~gDaed~l~~ 664 (783)
++|++.|++.++.++++|+..++..
T Consensus 86 ~~N~~~N~~~~~~v~~~Da~~~l~~ 110 (374)
T TIGR00308 86 KNNVEYNSVENIEVPNEDAANVLRY 110 (374)
T ss_pred HHHHHHhCCCcEEEEchhHHHHHHH
Confidence 9999999999999999999998753
No 43
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=8.8e-10 Score=112.93 Aligned_cols=77 Identities=23% Similarity=0.331 Sum_probs=69.5
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 003969 164 VELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 164 ~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
....|.|-|||.++++.+|++||.++| |.-..+.+ |.+||||||+|.+.|+|++||+.|||+-|+.-.|+|.-++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 345699999999999999999999995 65555554 7899999999999999999999999999999999999998
Q ss_pred CC
Q 003969 239 PR 240 (783)
Q Consensus 239 pr 240 (783)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 86
No 44
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.01 E-value=2.7e-09 Score=113.86 Aligned_cols=66 Identities=14% Similarity=0.158 Sum_probs=59.1
Q ss_pred hccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 596 WADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 596 ~l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
.+.+.++.+|||+|||+|..++.++... +.|+++|+++.+++.+++|++.+|+.++.++++|+.++
T Consensus 66 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~ 134 (264)
T TIGR00446 66 ALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVF 134 (264)
T ss_pred HhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHh
Confidence 3456688999999999999999998864 58999999999999999999999999999999998653
No 45
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.00 E-value=1.1e-09 Score=128.46 Aligned_cols=79 Identities=23% Similarity=0.320 Sum_probs=71.9
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 003969 163 DVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
..+.+|||+|||+.+++++|+++|++|| |..++++. ++++|||||+|.+.++|.+|++.|||..++||.|+|..|+
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~ 362 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQ 362 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEecc
Confidence 3456899999999999999999999995 77777776 6789999999999999999999999999999999999997
Q ss_pred CCC
Q 003969 239 PRS 241 (783)
Q Consensus 239 pr~ 241 (783)
++.
T Consensus 363 ~k~ 365 (562)
T TIGR01628 363 RKE 365 (562)
T ss_pred CcH
Confidence 664
No 46
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.99 E-value=1.2e-09 Score=126.71 Aligned_cols=117 Identities=13% Similarity=0.159 Sum_probs=95.1
Q ss_pred eeCCeEEEECCCccccCCHHHHHHHHHHHhhhcc------------------------CCCCCeEEEecCCcCHHHHHHh
Q 003969 565 SISNLRFCISPTAFFQVNTLAAEKLYSLGGDWAD------------------------LGPDTLLFDVCCGTGTIGLTLA 620 (783)
Q Consensus 565 ~i~gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~------------------------~~~g~~VLDLgCGtGti~l~LA 620 (783)
.|.|+.|.++|+.| +.+.-+|.|+.++++.+. ...+.+|||+|||+|.+++.++
T Consensus 80 ~F~g~~f~V~~~VL--IPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la 157 (506)
T PRK01544 80 EFYSREFIVNKHVL--IPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLL 157 (506)
T ss_pred EEcCcEEEeCCCcc--cCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHH
Confidence 46799999999999 888889999988876542 1134689999999999999998
Q ss_pred hhC--CEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHHHHHHHHhhhcCCCcccccccccCCchhhhhhhhccCC
Q 003969 621 HRV--GMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSS 697 (783)
Q Consensus 621 ~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~~gDaed~l~~l~~~~~d~p~~~~~~~~~~~~~~~~~~~~~~~~ 697 (783)
+.. .+|+|+|+++.|++.|++|++.+++. ++.++++|+.+.+. .. .-|++++|+++.+
T Consensus 158 ~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~---~~----------------~fDlIvsNPPYi~ 218 (506)
T PRK01544 158 CELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE---KQ----------------KFDFIVSNPPYIS 218 (506)
T ss_pred HHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc---CC----------------CccEEEECCCCCC
Confidence 763 69999999999999999999999984 69999999865321 10 1267889999998
Q ss_pred CCCCC
Q 003969 698 RDNVP 702 (783)
Q Consensus 698 ~~~~~ 702 (783)
....+
T Consensus 219 ~~~~~ 223 (506)
T PRK01544 219 HSEKS 223 (506)
T ss_pred chhhh
Confidence 87764
No 47
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.98 E-value=3.2e-09 Score=121.42 Aligned_cols=66 Identities=20% Similarity=0.288 Sum_probs=59.3
Q ss_pred hccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 596 WADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 596 ~l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
++.+.++.+|||+|||+|.+++.+++.. .+|+|+|+++.+++.+++|++.+|+.++.++++|+.++
T Consensus 245 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~ 313 (444)
T PRK14902 245 ALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKV 313 (444)
T ss_pred HhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccc
Confidence 4456678899999999999999999863 69999999999999999999999998899999998764
No 48
>PLN02672 methionine S-methyltransferase
Probab=98.97 E-value=1.3e-09 Score=134.11 Aligned_cols=119 Identities=17% Similarity=0.155 Sum_probs=95.2
Q ss_pred eeCCeEEEECCCccccCCHHHHHHHHHHHhhhccC--CCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHH
Q 003969 565 SISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL--GPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAH 640 (783)
Q Consensus 565 ~i~gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~~--~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak 640 (783)
.|.|++|.+.|+.| +.+..++.|+.. +..... .++.+|||||||+|.+++.|++.. .+|+|+|+++.|++.|+
T Consensus 83 ~F~~l~~~V~p~VL--IPRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~ 159 (1082)
T PLN02672 83 NRKKLTMMEIPSIF--IPEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAW 159 (1082)
T ss_pred EecCCceeeCCCcc--cCchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence 57899999999999 888899999888 333211 134689999999999999999875 69999999999999999
Q ss_pred HHHHHcCC----------------CcEEEEEccHHHHHHHHHhhhcCCCcccccccccCCchhhhhhhhccCCCCCCCC
Q 003969 641 RNAEINGI----------------KNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPE 703 (783)
Q Consensus 641 ~Na~~ngl----------------~nv~f~~gDaed~l~~l~~~~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (783)
+|++.|++ .+++|+++|+.+.+..... .-|+.++||+|.+..+++.
T Consensus 160 ~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~-----------------~fDlIVSNPPYI~~~e~~~ 221 (1082)
T PLN02672 160 INLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNI-----------------ELDRIVGCIPQILNPNPEA 221 (1082)
T ss_pred HHHHHcCcccccccccccccccccccEEEEECchhhhccccCC-----------------ceEEEEECCCcCCCcchhh
Confidence 99999864 3699999999775521100 1267899999999887743
No 49
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.97 E-value=1.7e-09 Score=123.35 Aligned_cols=69 Identities=20% Similarity=0.392 Sum_probs=61.4
Q ss_pred HhhhccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 593 i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
+..++.+.+|.+|||+|||+|..++.++... ++|+++|+++.+++.+++|++.+|+.+++++++|+.++
T Consensus 244 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~ 315 (434)
T PRK14901 244 VAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNL 315 (434)
T ss_pred HHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhc
Confidence 3445566788999999999999999999874 58999999999999999999999999999999998764
No 50
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.97 E-value=1.7e-09 Score=119.59 Aligned_cols=77 Identities=22% Similarity=0.354 Sum_probs=67.7
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCC--ceeEEEec
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGN--KTLKVANV 237 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~G--r~L~V~~A 237 (783)
..+|||+|||+.+++++|+++|++++ |..++|.+ ++++|||||+|.+.|+|++||+.|||+.+.| +.|+|..|
T Consensus 193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a 272 (346)
T TIGR01659 193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLA 272 (346)
T ss_pred cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence 45799999999999999999999995 66667664 5678999999999999999999999999977 68999988
Q ss_pred CCCC
Q 003969 238 VPRS 241 (783)
Q Consensus 238 ~pr~ 241 (783)
..+.
T Consensus 273 ~~~~ 276 (346)
T TIGR01659 273 EEHG 276 (346)
T ss_pred Cccc
Confidence 7653
No 51
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.96 E-value=1.1e-09 Score=127.89 Aligned_cols=73 Identities=19% Similarity=0.307 Sum_probs=66.6
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 164 VELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 164 ~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
...+|||+|||+.+++++|+++|.+|| |..+++++ ++++|||||+|.+.++|++||+.|||..++||.|+|..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 456899999999999999999999995 77777654 67899999999999999999999999999999999974
No 52
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.96 E-value=3.1e-09 Score=108.95 Aligned_cols=106 Identities=18% Similarity=0.307 Sum_probs=73.6
Q ss_pred ccccccc-ce-EEeeCCeEEEECCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhh--hCCEEEEE
Q 003969 554 SNDVVEA-RI-HDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH--RVGMVIGI 629 (783)
Q Consensus 554 ~~l~G~~-~I-~E~i~gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~--~~~~VigV 629 (783)
.+++|+. +. .-+-.|++|.++..--|-..+...|.. .+... ..++..|||+|||.|.|++++|+ .++.|+++
T Consensus 56 ~~LaG~~~~~t~~~E~G~~f~~D~~kvyfs~rl~~Er~--Ri~~~--v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~ 131 (200)
T PF02475_consen 56 EVLAGEPRTETIHKENGIRFKVDLSKVYFSPRLSTERR--RIANL--VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAV 131 (200)
T ss_dssp EEEEES--SEEEEEETTEEEEEETTTS---GGGHHHHH--HHHTC----TT-EEEETT-TTTTTHHHHHHHT-SSEEEEE
T ss_pred EEEeCCCceEEEEEeCCEEEEEccceEEEccccHHHHH--HHHhc--CCcceEEEEccCCccHHHHHHhhhcCccEEEEe
Confidence 4556765 33 334589999999765554445555553 24443 34688999999999999999999 57899999
Q ss_pred eCCHHHHHHHHHHHHHcCCCc-EEEEEccHHHHHH
Q 003969 630 EMNASAVSDAHRNAEINGIKN-CRFVCAKAEDVMG 663 (783)
Q Consensus 630 E~s~~AIe~Ak~Na~~ngl~n-v~f~~gDaed~l~ 663 (783)
|++|.|++.+++|++.|++.+ +..+++|+.+++.
T Consensus 132 d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~ 166 (200)
T PF02475_consen 132 DLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP 166 (200)
T ss_dssp ES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---
T ss_pred cCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC
Confidence 999999999999999999965 9999999998876
No 53
>smart00362 RRM_2 RNA recognition motif.
Probab=98.95 E-value=3.2e-09 Score=87.32 Aligned_cols=69 Identities=30% Similarity=0.498 Sum_probs=60.7
Q ss_pred cEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec--cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEE
Q 003969 167 SKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK--KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235 (783)
Q Consensus 167 ~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~--~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~ 235 (783)
+|+|+|||..++.++|+++|.++| +....+.. +.++|+|||+|.+.++|++|++.|+|..+.|+.|+|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 489999999999999999999996 55555554 3467999999999999999999999999999999873
No 54
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.94 E-value=2.2e-09 Score=112.78 Aligned_cols=72 Identities=25% Similarity=0.499 Sum_probs=63.2
Q ss_pred hhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHHHHHHH
Q 003969 594 GDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAEDVMGSL 665 (783)
Q Consensus 594 ~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gDaed~l~~l 665 (783)
..|+......+|||||||+|.+++.||++. .+|+|||+.+++++.|++|.+.|++ .+++++++|+.++.+..
T Consensus 37 ~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~ 111 (248)
T COG4123 37 AAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKAL 111 (248)
T ss_pred HhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcc
Confidence 344455557899999999999999999984 6999999999999999999999999 57999999999987654
No 55
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.94 E-value=6.3e-09 Score=110.73 Aligned_cols=92 Identities=23% Similarity=0.261 Sum_probs=77.4
Q ss_pred eCCeEEEECCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHH
Q 003969 566 ISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNA 643 (783)
Q Consensus 566 i~gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na 643 (783)
+.++.|.++++.| +.+..++.+...+.......++.+|||+|||+|.+++.++... .+|+|+|+++.+++.|++|+
T Consensus 75 f~~~~~~~~~~~l--ipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~ 152 (275)
T PRK09328 75 FWGLDFKVSPGVL--IPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNA 152 (275)
T ss_pred EcCcEEEECCCce--eCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 5678999999999 5566667788877766555667899999999999999999885 79999999999999999999
Q ss_pred HHcCCCcEEEEEccHH
Q 003969 644 EINGIKNCRFVCAKAE 659 (783)
Q Consensus 644 ~~ngl~nv~f~~gDae 659 (783)
......++.|+++|+.
T Consensus 153 ~~~~~~~i~~~~~d~~ 168 (275)
T PRK09328 153 KHGLGARVEFLQGDWF 168 (275)
T ss_pred HhCCCCcEEEEEcccc
Confidence 8334467999999873
No 56
>smart00360 RRM RNA recognition motif.
Probab=98.91 E-value=3.7e-09 Score=86.47 Aligned_cols=66 Identities=29% Similarity=0.469 Sum_probs=58.8
Q ss_pred EeCCCcccCHHHHHHHhhhcc-ceeeEeecc----CCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEE
Q 003969 170 LVHLPRKWHSDNLKKFLADHG-ILYKSAKKK----KGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235 (783)
Q Consensus 170 V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~----r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~ 235 (783)
|+|||+.+++++|+++|+++| |....+... +++|||||+|.+.++|.+|++.|+|..++|+.|+|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 689999999999999999996 766666653 458999999999999999999999999999999873
No 57
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.89 E-value=4.8e-09 Score=121.35 Aligned_cols=76 Identities=18% Similarity=0.243 Sum_probs=67.9
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 003969 164 VELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 164 ~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
...+|||+|||+.+++++|+++|+.|| |....+++ ++++|||||+|.+.++|++||+.|||+.+.|++|.|..|.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 456899999999999999999999996 65556554 6789999999999999999999999999999999999885
Q ss_pred C
Q 003969 239 P 239 (783)
Q Consensus 239 p 239 (783)
.
T Consensus 374 ~ 374 (509)
T TIGR01642 374 V 374 (509)
T ss_pred c
Confidence 4
No 58
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.89 E-value=1.2e-08 Score=110.55 Aligned_cols=74 Identities=16% Similarity=0.198 Sum_probs=64.6
Q ss_pred HHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcC-CCcEEEEEccHHH
Q 003969 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEING-IKNCRFVCAKAED 660 (783)
Q Consensus 587 e~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ng-l~nv~f~~gDaed 660 (783)
..++..+++.+.+.++.+|||+|||+|.++..|++.+.+|+|||+++.+++.+++++..++ ..+++++++|+.+
T Consensus 22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~ 96 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALK 96 (294)
T ss_pred HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhh
Confidence 3445566666777788999999999999999999999999999999999999999998777 4689999999875
No 59
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.89 E-value=3.5e-09 Score=123.41 Aligned_cols=77 Identities=23% Similarity=0.248 Sum_probs=67.5
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCccC-CceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIG-NKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~-Gr~L~V~~ 236 (783)
...+.+|||+|||+.+++++|+++|+++| |..+++++ ++++|||||+|.+.|+|++||+.|||+.+. |+.|.|..
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 34467999999999999999999999996 66667765 789999999999999999999999999996 78888765
Q ss_pred cC
Q 003969 237 VV 238 (783)
Q Consensus 237 A~ 238 (783)
+.
T Consensus 135 S~ 136 (578)
T TIGR01648 135 SV 136 (578)
T ss_pred cc
Confidence 53
No 60
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.88 E-value=7.9e-09 Score=113.70 Aligned_cols=70 Identities=23% Similarity=0.250 Sum_probs=62.0
Q ss_pred HHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 592 ~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
.++.++...++.+|||+|||+|++.+.++..+.+|+|+|+++.|+..|+.|++.+|+.++.++++|+.++
T Consensus 173 ~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l 242 (329)
T TIGR01177 173 AMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKL 242 (329)
T ss_pred HHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcC
Confidence 3444556677889999999999999999888899999999999999999999999998899999998763
No 61
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.87 E-value=2.1e-08 Score=114.31 Aligned_cols=66 Identities=17% Similarity=0.349 Sum_probs=59.8
Q ss_pred hccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 596 WADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 596 ~l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
++.+.+|.+|||+|||+|..++.++... .+|+++|+++.+++.+++|++..|+.+++++++|+.++
T Consensus 232 ~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l 300 (431)
T PRK14903 232 LMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERL 300 (431)
T ss_pred HhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhh
Confidence 4466788999999999999999999863 69999999999999999999999998899999998864
No 62
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.87 E-value=2.2e-08 Score=110.80 Aligned_cols=88 Identities=18% Similarity=0.241 Sum_probs=70.9
Q ss_pred eCCeEEEECCCccccCCHHHH-HHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHH
Q 003969 566 ISNLRFCISPTAFFQVNTLAA-EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRN 642 (783)
Q Consensus 566 i~gl~f~isp~sFfQvN~~~a-e~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~N 642 (783)
+.++.+...|+.|++.+.... ..|++.+.. ....+|||||||+|.+++.++++. .+|+++|+++.|++.|++|
T Consensus 164 ~~~l~i~~~pgvFs~~~lD~gt~lLl~~l~~----~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~n 239 (342)
T PRK09489 164 VDGLTVKTLPGVFSRDGLDVGSQLLLSTLTP----HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRAT 239 (342)
T ss_pred cCCEEEEeCCCCCCCCCCCHHHHHHHHhccc----cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 467899999999999887544 445444332 234589999999999999999875 4899999999999999999
Q ss_pred HHHcCCCcEEEEEccH
Q 003969 643 AEINGIKNCRFVCAKA 658 (783)
Q Consensus 643 a~~ngl~nv~f~~gDa 658 (783)
++.|++. .+++.+|+
T Consensus 240 l~~n~l~-~~~~~~D~ 254 (342)
T PRK09489 240 LAANGLE-GEVFASNV 254 (342)
T ss_pred HHHcCCC-CEEEEccc
Confidence 9999984 56777665
No 63
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.87 E-value=5.8e-09 Score=101.58 Aligned_cols=61 Identities=26% Similarity=0.526 Sum_probs=55.1
Q ss_pred CCCCeEEEecCCcCHHHHHHhhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~---~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
.++.+|||||||+|.+++.|++. ..+|+|||++++||+.|+.+++.+++.|++|+++|+++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~ 65 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED 65 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhc
Confidence 35689999999999999999943 47999999999999999999999999999999999887
No 64
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.87 E-value=2.7e-08 Score=101.26 Aligned_cols=72 Identities=32% Similarity=0.440 Sum_probs=62.5
Q ss_pred HHhhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHH
Q 003969 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMG 663 (783)
Q Consensus 592 ~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~ 663 (783)
.+..++.+.++.+|||+|||+|.+++.+++.. .+|+|||+++.+++.|++|++.+++.+++++++|+.+.+.
T Consensus 31 ~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~ 104 (196)
T PRK07402 31 LLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLA 104 (196)
T ss_pred HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHh
Confidence 34555566778899999999999999998753 6999999999999999999999999899999999977543
No 65
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.86 E-value=2.2e-08 Score=111.96 Aligned_cols=89 Identities=21% Similarity=0.290 Sum_probs=67.7
Q ss_pred CeEEEECCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHH
Q 003969 568 NLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEI 645 (783)
Q Consensus 568 gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ 645 (783)
+++|.-.|+.|-...-.....+ +++.+....+.+|||||||+|.+++.++++. .+|++||.++.|++.|++|++.
T Consensus 198 ~~~~~~~~gVFs~~~LD~Gtrl---lL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~ 274 (378)
T PRK15001 198 DWTIHNHANVFSRTGLDIGARF---FMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVET 274 (378)
T ss_pred eEEEEecCCccCCCCcChHHHH---HHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 3555556999977554433333 2333333334689999999999999999874 6999999999999999999998
Q ss_pred cCC---CcEEEEEccHH
Q 003969 646 NGI---KNCRFVCAKAE 659 (783)
Q Consensus 646 ngl---~nv~f~~gDae 659 (783)
|+. .+++|+.+|+.
T Consensus 275 n~~~~~~~v~~~~~D~l 291 (378)
T PRK15001 275 NMPEALDRCEFMINNAL 291 (378)
T ss_pred cCcccCceEEEEEcccc
Confidence 875 36899888863
No 66
>PRK14967 putative methyltransferase; Provisional
Probab=98.85 E-value=3.5e-08 Score=102.55 Aligned_cols=89 Identities=20% Similarity=0.328 Sum_probs=70.0
Q ss_pred CeEEEECCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHHc
Q 003969 568 NLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEIN 646 (783)
Q Consensus 568 gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~n 646 (783)
++.+.+.++.|.... ..+.|...+.. +.+.++.+|||+|||+|.+++.+++.. .+|+|+|+++.+++.|++|+..+
T Consensus 6 ~~~~~~~~g~~~p~~--ds~~l~~~l~~-~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~ 82 (223)
T PRK14967 6 PDALLRAPGVYRPQE--DTQLLADALAA-EGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLA 82 (223)
T ss_pred CceeecCCCCcCCCC--cHHHHHHHHHh-cccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHh
Confidence 567777888784322 33445544433 345677899999999999999999875 49999999999999999999998
Q ss_pred CCCcEEEEEccHHH
Q 003969 647 GIKNCRFVCAKAED 660 (783)
Q Consensus 647 gl~nv~f~~gDaed 660 (783)
++ ++.++++|+.+
T Consensus 83 ~~-~~~~~~~d~~~ 95 (223)
T PRK14967 83 GV-DVDVRRGDWAR 95 (223)
T ss_pred CC-eeEEEECchhh
Confidence 87 68999998765
No 67
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.85 E-value=2.9e-09 Score=108.85 Aligned_cols=71 Identities=18% Similarity=0.300 Sum_probs=63.1
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 166 LSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 166 ~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
-|||||||+|.+..+.|++.|++|| |..+.|+. +||||||||||++.|.|.+|.+--|=. ++||+--|+.|
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~pi-IdGR~aNcnlA 88 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPI-IDGRKANCNLA 88 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCc-ccccccccchh
Confidence 3899999999999999999999995 87777776 799999999999999999998876654 89998888766
No 68
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=98.85 E-value=5.2e-09 Score=102.69 Aligned_cols=74 Identities=18% Similarity=0.227 Sum_probs=64.8
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~p 239 (783)
..+||||||+..++..+|...|..|| +..+.|- ....|||||+|+++-+|+.|+..|||..+-|..|+|....-
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvA-rnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVA-RNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEe-ecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 46899999999999999999999997 4444433 46779999999999999999999999999999999976643
No 69
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.84 E-value=8.5e-09 Score=106.92 Aligned_cols=74 Identities=18% Similarity=0.215 Sum_probs=67.2
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec-cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 003969 164 VELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK-KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 164 ~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~-~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
.++.|+|+||++.+++++|++||+.+| |..+.+.. ++.++||||+|.+++.++.|+ .|||..+.++.|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 468899999999999999999999996 88888777 667799999999999999999 899999999999998663
No 70
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.84 E-value=7.2e-09 Score=121.69 Aligned_cols=72 Identities=17% Similarity=0.300 Sum_probs=65.9
Q ss_pred cEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 003969 167 SKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 167 ~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
+|||+|||..+++++|+++|+++| |..+++.+ ++++|||||+|.+.++|++||+.||+..++|+.|+|..++
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc
Confidence 699999999999999999999996 66777765 6788999999999999999999999999999999998764
No 71
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.83 E-value=5.1e-09 Score=109.67 Aligned_cols=119 Identities=18% Similarity=0.241 Sum_probs=93.2
Q ss_pred eeCCeEEEECCCccccCCHHHHHHHHHHHhhhccC---CCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHH
Q 003969 565 SISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL---GPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDA 639 (783)
Q Consensus 565 ~i~gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~~---~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~A 639 (783)
.|+++.+...|+.| +.+..+|.++.++++.+.- ..+..+||+|||+|.|++.+++.- ..|+|||.++.||..|
T Consensus 111 ~F~~l~l~~~pgVl--IPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La 188 (328)
T KOG2904|consen 111 PFGDLDLVCKPGVL--IPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLA 188 (328)
T ss_pred ccCCceEEecCCee--ecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHH
Confidence 35789999999999 7787888888888876542 345689999999999999999874 5899999999999999
Q ss_pred HHHHHHcCCCc-EEEEEccHH----HHHHHHHhhhcCCCcccccccccCCchhhhhhhhccCCCCCCC
Q 003969 640 HRNAEINGIKN-CRFVCAKAE----DVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVP 702 (783)
Q Consensus 640 k~Na~~ngl~n-v~f~~gDae----d~l~~l~~~~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (783)
.+|++++++.+ +.+++-+++ +-.+.+. ..-|+-++||+|.+.+|++
T Consensus 189 ~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~-----------------~~~dllvsNPPYI~~dD~~ 239 (328)
T KOG2904|consen 189 KENAQRLKLSGRIEVIHNIMESDASDEHPLLE-----------------GKIDLLVSNPPYIRKDDNR 239 (328)
T ss_pred HHHHHHHhhcCceEEEeccccccccccccccc-----------------CceeEEecCCCcccccchh
Confidence 99999999954 777754443 2222111 1235668999999999985
No 72
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.82 E-value=8.4e-09 Score=117.82 Aligned_cols=74 Identities=20% Similarity=0.356 Sum_probs=67.6
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
..+|||+|||..+++++|+++|+++| |..+.+.+ ++++|||||+|.+.++|.+|++.|||+.+.|+.|+|..|.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 46799999999999999999999996 66666665 4778999999999999999999999999999999999886
No 73
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.81 E-value=3.2e-08 Score=112.67 Aligned_cols=65 Identities=15% Similarity=0.301 Sum_probs=57.9
Q ss_pred hhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 595 ~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
.++.+.++.+|||+|||+|..++.+++.. .+|+|+|+++.+++.+++|++.+|+. ++++++|+.+
T Consensus 238 ~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~ 304 (427)
T PRK10901 238 TLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARD 304 (427)
T ss_pred HHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCccc
Confidence 34566788999999999999999999875 49999999999999999999999985 7899999875
No 74
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.81 E-value=1.3e-08 Score=104.49 Aligned_cols=75 Identities=25% Similarity=0.428 Sum_probs=67.0
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~p 239 (783)
...|||+|||+.+++++|+++|.++| +....+.. ++++|||||+|.+++++..|++.|+|..|.|+.|.|..+.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 57899999999999999999999996 43444443 68899999999999999999999999999999999998765
No 75
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.81 E-value=2.9e-08 Score=113.63 Aligned_cols=67 Identities=15% Similarity=0.243 Sum_probs=58.9
Q ss_pred hhccCCCCCeEEEecCCcCHHHHHHhhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 595 DWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 595 ~~l~~~~g~~VLDLgCGtGti~l~LA~~---~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
.++.+.+|.+|||+|||+|..++.+++. .++|+|+|+++.+++.+++|++.+|+.+++++++|+.++
T Consensus 244 ~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~ 313 (445)
T PRK14904 244 LLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSF 313 (445)
T ss_pred HhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccc
Confidence 3445667889999999999999999875 368999999999999999999999998999999998653
No 76
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.81 E-value=7.2e-09 Score=104.51 Aligned_cols=76 Identities=25% Similarity=0.368 Sum_probs=55.9
Q ss_pred HHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCC-----------EEEEEeCCHHHHHHHHHHHHHcCCC-cEEEE
Q 003969 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG-----------MVIGIEMNASAVSDAHRNAEINGIK-NCRFV 654 (783)
Q Consensus 587 e~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~-----------~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~ 654 (783)
+.|...++.++...++..|||.+||+|+|.+..+.... +++|+|+++.+++.|+.|++..|+. .+.|.
T Consensus 14 ~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~ 93 (179)
T PF01170_consen 14 PTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFI 93 (179)
T ss_dssp HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEE
T ss_pred HHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEE
Confidence 34445555666777889999999999999998876632 3789999999999999999999985 49999
Q ss_pred EccHHHHH
Q 003969 655 CAKAEDVM 662 (783)
Q Consensus 655 ~gDaed~l 662 (783)
++|+.++-
T Consensus 94 ~~D~~~l~ 101 (179)
T PF01170_consen 94 QWDARELP 101 (179)
T ss_dssp E--GGGGG
T ss_pred ecchhhcc
Confidence 99988653
No 77
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.79 E-value=1.2e-08 Score=118.86 Aligned_cols=72 Identities=21% Similarity=0.264 Sum_probs=63.8
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhc--c-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCC
Q 003969 166 LSKCLVHLPRKWHSDNLKKFLADH--G-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRS 241 (783)
Q Consensus 166 ~~i~V~nLp~~~~~~~Lkklf~~~--~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr~ 241 (783)
-.|||+|||+.+++++|+++|+++ | |..++ ..++||||+|.+.|+|++||+.|||.++.|+.|+|..|+|+.
T Consensus 234 k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~----~~rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 234 KILYVRNLMTTTTEEIIEKSFSEFKPGKVERVK----KIRDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVD 308 (578)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEE----eecCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCC
Confidence 369999999999999999999999 5 44333 235799999999999999999999999999999999998864
No 78
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.79 E-value=1.9e-08 Score=91.98 Aligned_cols=58 Identities=28% Similarity=0.534 Sum_probs=53.3
Q ss_pred CCCeEEEecCCcCHHHHHHhh--hCCEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAH--RVGMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKA 658 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~--~~~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gDa 658 (783)
++.+|||||||+|.+++.|++ ...+|+|||+++.+++.|++++...+. .+++|+++|+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~ 61 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA 61 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc
Confidence 467999999999999999999 578999999999999999999976666 6899999998
No 79
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.78 E-value=7.9e-08 Score=89.00 Aligned_cols=72 Identities=32% Similarity=0.406 Sum_probs=62.0
Q ss_pred HHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 589 L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
+...+...+.+..+.+|||+|||+|.++..+++.. .+|+|+|+++.+++.|++|++.+++.+++++.+|+.+
T Consensus 7 ~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 80 (124)
T TIGR02469 7 VRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPE 80 (124)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccc
Confidence 34445566666677899999999999999999874 5899999999999999999999998889999998764
No 80
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.78 E-value=6.4e-08 Score=97.81 Aligned_cols=61 Identities=25% Similarity=0.261 Sum_probs=56.1
Q ss_pred CCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
.+.+|||+|||+|.+++.++... .+|+|||.++.|++.|++|++.+++.|++++++|++++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~ 104 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDF 104 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhc
Confidence 47899999999999999998764 58999999999999999999999998899999999874
No 81
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=3e-08 Score=106.44 Aligned_cols=89 Identities=25% Similarity=0.358 Sum_probs=70.1
Q ss_pred CCeEEEECCCccccCCHH-HHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHH
Q 003969 567 SNLRFCISPTAFFQVNTL-AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNA 643 (783)
Q Consensus 567 ~gl~f~isp~sFfQvN~~-~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na 643 (783)
.+++|.-.|+.|---.-. ..+.|.+. +....+.+|||||||.|.+|+.|++.. .+|+-+|++..||+.|++|+
T Consensus 127 ~~~~~~t~pGVFS~~~lD~GS~lLl~~----l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl 202 (300)
T COG2813 127 HELTFKTLPGVFSRDKLDKGSRLLLET----LPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNL 202 (300)
T ss_pred CceEEEeCCCCCcCCCcChHHHHHHHh----CCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhH
Confidence 467888899999654443 44444433 333344599999999999999999986 59999999999999999999
Q ss_pred HHcCCCcEEEEEccHH
Q 003969 644 EINGIKNCRFVCAKAE 659 (783)
Q Consensus 644 ~~ngl~nv~f~~gDae 659 (783)
..|++++..++..|+.
T Consensus 203 ~~N~~~~~~v~~s~~~ 218 (300)
T COG2813 203 AANGVENTEVWASNLY 218 (300)
T ss_pred HHcCCCccEEEEeccc
Confidence 9999988766666543
No 82
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.77 E-value=4.9e-08 Score=99.60 Aligned_cols=78 Identities=23% Similarity=0.414 Sum_probs=65.8
Q ss_pred HHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh---CCEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHHHH
Q 003969 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAEDVM 662 (783)
Q Consensus 587 e~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~---~~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gDaed~l 662 (783)
+.+...++..+.+.++.+|||+|||+|.+++.+++. ..+|++||+++.+++.|++|++.+++ .++.++++|+.+.+
T Consensus 26 ~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l 105 (198)
T PRK00377 26 EEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEIL 105 (198)
T ss_pred HHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhH
Confidence 334444556677888999999999999999998875 26899999999999999999999995 78999999998766
Q ss_pred HH
Q 003969 663 GS 664 (783)
Q Consensus 663 ~~ 664 (783)
+.
T Consensus 106 ~~ 107 (198)
T PRK00377 106 FT 107 (198)
T ss_pred hh
Confidence 53
No 83
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.77 E-value=1.3e-08 Score=111.73 Aligned_cols=79 Identities=22% Similarity=0.310 Sum_probs=67.1
Q ss_pred ccc-EEEeCCCcccCHHHHHHHhhhccceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCCcc
Q 003969 165 ELS-KCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRSFD 243 (783)
Q Consensus 165 ~~~-i~V~nLp~~~~~~~Lkklf~~~~v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr~~~ 243 (783)
.+| |||+||+..++++.|+++|++||-. .+|+| -+.||||.|.+-++|.+||+.|||++++|..|.|..|+|-..+
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~v-eRVkk--~rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKV-ERVKK--PRDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccce-EEeec--ccceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhh
Confidence 344 8999999999999999999999632 23333 2679999999999999999999999999999999999987655
Q ss_pred ccc
Q 003969 244 KNI 246 (783)
Q Consensus 244 k~~ 246 (783)
|+.
T Consensus 335 k~~ 337 (506)
T KOG0117|consen 335 KKE 337 (506)
T ss_pred ccc
Confidence 443
No 84
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.76 E-value=3e-08 Score=99.62 Aligned_cols=78 Identities=29% Similarity=0.368 Sum_probs=69.3
Q ss_pred HHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHH
Q 003969 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665 (783)
Q Consensus 588 ~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~~l 665 (783)
.+...++..+.+.++.+++|+|||||++++.++.. ..+|++||-++++++..++|++.+|++|++++.|++.+.|+.+
T Consensus 21 EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~ 100 (187)
T COG2242 21 EIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDL 100 (187)
T ss_pred HHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCC
Confidence 34444666778899999999999999999999944 4799999999999999999999999999999999999998754
No 85
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.76 E-value=8.1e-08 Score=97.84 Aligned_cols=64 Identities=25% Similarity=0.514 Sum_probs=58.0
Q ss_pred CCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~~ 664 (783)
...+|||||||+|.+++.+++.. ..|+|||+++.+++.|++++..+++.|++++++|+.+++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~ 81 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDK 81 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHh
Confidence 34689999999999999999874 58999999999999999999999999999999999987643
No 86
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.75 E-value=5.1e-08 Score=80.53 Aligned_cols=69 Identities=25% Similarity=0.469 Sum_probs=60.4
Q ss_pred cEEEeCCCcccCHHHHHHHhhhcc-ceeeEeecc---CCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEE
Q 003969 167 SKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKK---KGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235 (783)
Q Consensus 167 ~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~---r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~ 235 (783)
+|+|+|||..++.++|+.+|..+| +....+... +++|+|||+|.+.++|+.|++.|+|..+.|+.+.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 489999999999999999999985 555555542 347999999999999999999999999999999885
No 87
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.75 E-value=1.3e-07 Score=95.52 Aligned_cols=73 Identities=26% Similarity=0.273 Sum_probs=62.6
Q ss_pred HHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHH
Q 003969 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659 (783)
Q Consensus 587 e~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDae 659 (783)
+.+...++.++.+.++.+|||+|||+|.+++.+++.. .+|+++|+++.+++.|++|+..+++.+++++++|+.
T Consensus 17 ~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~ 91 (187)
T PRK08287 17 EEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP 91 (187)
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch
Confidence 3344455566666678899999999999999999875 599999999999999999999999888999999974
No 88
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.74 E-value=2.9e-08 Score=114.74 Aligned_cols=77 Identities=17% Similarity=0.164 Sum_probs=67.4
Q ss_pred CccccEEEeCCCc-ccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 003969 163 DVELSKCLVHLPR-KWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (783)
Q Consensus 163 ~~~~~i~V~nLp~-~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr 240 (783)
.++..|||+|||+ .+++++|+++|+.|| |..+++++. .+|||||+|.+.++|.+||+.|||..+.|++|+|..++.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 3456899999998 699999999999996 776666653 4699999999999999999999999999999999887543
No 89
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.74 E-value=1.1e-07 Score=97.47 Aligned_cols=62 Identities=26% Similarity=0.465 Sum_probs=55.5
Q ss_pred CCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l 662 (783)
.+.+|||+|||+|.+++.|++.. .+|+|||+++.+++.|++++..+++.|+.|+++|+.+.+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l 103 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVL 103 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHH
Confidence 45789999999999999999874 589999999999999999999999989999999994333
No 90
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.74 E-value=2.9e-08 Score=113.45 Aligned_cols=76 Identities=20% Similarity=0.301 Sum_probs=67.0
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
+.....|||+|||+.+++++|++||+++| |..+++++ ++++|||||+|.+.++|++||. |||..+.|+.|.|..
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 44456799999999999999999999995 77777765 5789999999999999999996 999999999999976
Q ss_pred cC
Q 003969 237 VV 238 (783)
Q Consensus 237 A~ 238 (783)
++
T Consensus 165 ~~ 166 (457)
T TIGR01622 165 SQ 166 (457)
T ss_pred cc
Confidence 53
No 91
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.74 E-value=2.5e-08 Score=111.61 Aligned_cols=77 Identities=25% Similarity=0.392 Sum_probs=70.0
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHH-----cC-CccCCceeE
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEEL-----EG-ISIGNKTLK 233 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~L-----nG-~~~~Gr~L~ 233 (783)
+..|||+|||+.+++++|+..|++|| |.|+.+.+ ++++|.|||.|.++.+++++|+.- .| +.++||.|+
T Consensus 292 ~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lk 371 (678)
T KOG0127|consen 292 GKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLK 371 (678)
T ss_pred cceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEe
Confidence 46799999999999999999999995 88888877 789999999999999999999988 45 789999999
Q ss_pred EEecCCCC
Q 003969 234 VANVVPRS 241 (783)
Q Consensus 234 V~~A~pr~ 241 (783)
|..|.+|.
T Consensus 372 v~~Av~Rk 379 (678)
T KOG0127|consen 372 VTLAVTRK 379 (678)
T ss_pred eeeccchH
Confidence 99998873
No 92
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.73 E-value=4.1e-08 Score=107.70 Aligned_cols=95 Identities=20% Similarity=0.350 Sum_probs=76.1
Q ss_pred eCCeEEEECCC-ccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCE-EEEEeCCHHHHHHHHHHH
Q 003969 566 ISNLRFCISPT-AFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGM-VIGIEMNASAVSDAHRNA 643 (783)
Q Consensus 566 i~gl~f~isp~-sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~-VigVE~s~~AIe~Ak~Na 643 (783)
-.|+.|++++. .||- .....+... ++++.. .|.+|||+|||.|.|++++|+.++. |+++|++|.|++.+++|+
T Consensus 157 E~G~~f~vD~~Kv~Fs-prl~~ER~R--va~~v~--~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi 231 (341)
T COG2520 157 ENGCRFKVDVAKVYFS-PRLSTERAR--VAELVK--EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENI 231 (341)
T ss_pred cCCEEEEEchHHeEEC-CCchHHHHH--HHhhhc--CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHH
Confidence 36899999975 4443 333333321 333332 4899999999999999999999754 999999999999999999
Q ss_pred HHcCCCc-EEEEEccHHHHHHHH
Q 003969 644 EINGIKN-CRFVCAKAEDVMGSL 665 (783)
Q Consensus 644 ~~ngl~n-v~f~~gDaed~l~~l 665 (783)
++|++.+ +..++||+.++++.+
T Consensus 232 ~LN~v~~~v~~i~gD~rev~~~~ 254 (341)
T COG2520 232 RLNKVEGRVEPILGDAREVAPEL 254 (341)
T ss_pred HhcCccceeeEEeccHHHhhhcc
Confidence 9999987 999999999998874
No 93
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.72 E-value=2.7e-08 Score=112.18 Aligned_cols=75 Identities=21% Similarity=0.312 Sum_probs=68.5
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 003969 166 LSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (783)
Q Consensus 166 ~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr 240 (783)
..|||||+|+.|++++|..+|++.| |.+.+++. |+.+||||++|.+.|++..||+.|||+++.||+|+|..+..+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 7899999999999999999999985 77777665 788999999999999999999999999999999999987543
No 94
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.72 E-value=7.2e-08 Score=99.12 Aligned_cols=76 Identities=17% Similarity=0.178 Sum_probs=65.1
Q ss_pred HHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHHH
Q 003969 586 AEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAEDV 661 (783)
Q Consensus 586 ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~~gDaed~ 661 (783)
...++..+++++.+.++.+|||+|||+|.++..|++.. ++|+|+|+++++++.|++|+..+++. +++++.+|+.+.
T Consensus 57 ~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~ 136 (205)
T PRK13944 57 APHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRG 136 (205)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccC
Confidence 33455666777777788999999999999999999864 69999999999999999999999985 599999998754
No 95
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=2.2e-08 Score=96.03 Aligned_cols=82 Identities=17% Similarity=0.214 Sum_probs=69.9
Q ss_pred ccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEcc
Q 003969 579 FQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAK 657 (783)
Q Consensus 579 fQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gD 657 (783)
|.+.+..+..+...|-.-.+...|+.++|||||+|.+++..+... ..|+|+|++++|++.+.+|++...+ ++.++++|
T Consensus 26 Y~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv-qidlLqcd 104 (185)
T KOG3420|consen 26 YPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV-QIDLLQCD 104 (185)
T ss_pred CCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh-hhheeeee
Confidence 446788888888888887777789999999999999998777653 6899999999999999999998887 46888887
Q ss_pred HHHH
Q 003969 658 AEDV 661 (783)
Q Consensus 658 aed~ 661 (783)
..+.
T Consensus 105 ildl 108 (185)
T KOG3420|consen 105 ILDL 108 (185)
T ss_pred ccch
Confidence 6654
No 96
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.71 E-value=1.3e-07 Score=96.22 Aligned_cols=61 Identities=25% Similarity=0.248 Sum_probs=56.1
Q ss_pred CCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
++.+|||+|||+|.+++.+++. ..+|+|||.++.+++.|++|++.+++++++|+++|+.++
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~ 107 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEF 107 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhC
Confidence 4789999999999999999874 479999999999999999999999998899999999874
No 97
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.70 E-value=2.7e-08 Score=115.06 Aligned_cols=73 Identities=22% Similarity=0.310 Sum_probs=60.8
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhc----c-------ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCcee
Q 003969 164 VELSKCLVHLPRKWHSDNLKKFLADH----G-------ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTL 232 (783)
Q Consensus 164 ~~~~i~V~nLp~~~~~~~Lkklf~~~----~-------v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L 232 (783)
..-+|||||||+.+++++|+.||.++ + .....+...+.+|||||+|.+.|+|.+|| .|||+.|.|+.|
T Consensus 174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~~~g~~l 252 (509)
T TIGR01642 174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAM-ALDSIIYSNVFL 252 (509)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhh-cCCCeEeeCcee
Confidence 34579999999999999999999976 1 12223344678899999999999999999 599999999999
Q ss_pred EEEec
Q 003969 233 KVANV 237 (783)
Q Consensus 233 ~V~~A 237 (783)
+|...
T Consensus 253 ~v~r~ 257 (509)
T TIGR01642 253 KIRRP 257 (509)
T ss_pred EecCc
Confidence 98643
No 98
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.69 E-value=1.2e-07 Score=94.98 Aligned_cols=60 Identities=18% Similarity=0.295 Sum_probs=54.5
Q ss_pred CCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
.++.+|||+|||+|.+++.+++.+.+|+|+|+++.+++.|++|+..+++ +++++++|+.+
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~ 77 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFK 77 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccc
Confidence 4567899999999999999999888999999999999999999998887 68999999754
No 99
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.68 E-value=9.7e-08 Score=94.97 Aligned_cols=69 Identities=17% Similarity=0.204 Sum_probs=60.2
Q ss_pred HHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 591 SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 591 ~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
+.+++.+.+.++.+|||+|||+|.++..+++++.+|+|||+++.+++.+++|+.. ..+++++++|+.++
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~ 71 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKF 71 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcC
Confidence 4566677777888999999999999999999988999999999999999999753 45899999998764
No 100
>smart00361 RRM_1 RNA recognition motif.
Probab=98.67 E-value=5.1e-08 Score=83.13 Aligned_cols=56 Identities=16% Similarity=0.256 Sum_probs=46.9
Q ss_pred HHHHHHHhh----hcc-ceeeE-eec------cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEE
Q 003969 179 SDNLKKFLA----DHG-ILYKS-AKK------KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKV 234 (783)
Q Consensus 179 ~~~Lkklf~----~~~-v~~~~-i~~------~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V 234 (783)
+++|+.+|. ++| |.... +.. ++++|||||+|.+.++|.+|++.|||..+.||.|+|
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888988 885 54442 332 567899999999999999999999999999999986
No 101
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.65 E-value=1.1e-07 Score=97.79 Aligned_cols=72 Identities=19% Similarity=0.243 Sum_probs=63.3
Q ss_pred HHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 589 L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
++.+++.++.+.++.+|||+|||+|.++..|++.+.+|++||+++.+++.|++|+..+++.++.++.+|+.+
T Consensus 66 ~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 137 (212)
T PRK00312 66 MVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWK 137 (212)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCccc
Confidence 344555666777889999999999999999998888999999999999999999999999899999999743
No 102
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.64 E-value=1e-07 Score=77.38 Aligned_cols=55 Identities=35% Similarity=0.500 Sum_probs=46.0
Q ss_pred HHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 182 LKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 182 Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
|+++|++|| |....+.... +++|||+|.+.++|++|++.|||..|.|++|+|.-|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 688999997 4444443333 699999999999999999999999999999999754
No 103
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=4.9e-08 Score=101.46 Aligned_cols=77 Identities=18% Similarity=0.317 Sum_probs=71.4
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhc-cceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 003969 166 LSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (783)
Q Consensus 166 ~~i~V~nLp~~~~~~~Lkklf~~~-~v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr 240 (783)
+-++|+-|...++.++||+.|.+| +|+.++|++ ++|||||||.|.+.++|+.||+.|||.=+.+|.|+-+-|..|
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRK 142 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRK 142 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccC
Confidence 459999999999999999999999 599999988 799999999999999999999999999999999999999766
Q ss_pred Cc
Q 003969 241 SF 242 (783)
Q Consensus 241 ~~ 242 (783)
+.
T Consensus 143 p~ 144 (321)
T KOG0148|consen 143 PS 144 (321)
T ss_pred cc
Confidence 63
No 104
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.64 E-value=3.5e-08 Score=99.07 Aligned_cols=73 Identities=16% Similarity=0.316 Sum_probs=66.4
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 003969 166 LSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 166 ~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
+.|.|-||.+.++.++|+.+|++|| |-.+.|.. +.++|||||-|-...+|++|++.|+|..++|+.|+|..|+
T Consensus 14 ~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred eeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 4699999999999999999999995 66666665 6789999999999999999999999999999999998774
No 105
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.63 E-value=1.5e-07 Score=100.97 Aligned_cols=70 Identities=17% Similarity=0.162 Sum_probs=59.8
Q ss_pred HHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 589 L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
+...+++++.+.++.+|||+|||+|.++..|++++.+|+|||+++.+++.+++++.. .+++++++|+.++
T Consensus 30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~ 99 (272)
T PRK00274 30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKV 99 (272)
T ss_pred HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcC
Confidence 344555666777888999999999999999999988999999999999999987642 6899999998864
No 106
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.62 E-value=9e-08 Score=103.36 Aligned_cols=90 Identities=20% Similarity=0.180 Sum_probs=69.7
Q ss_pred eEEEECCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCC
Q 003969 569 LRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI 648 (783)
Q Consensus 569 l~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl 648 (783)
+.|...|..||+.+.... .....++..+...++.+|||+|||+|.+++.|++.+.+|+|||+++.|++.|++++..+++
T Consensus 89 l~fy~~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l 167 (287)
T PRK12335 89 LSFYCKPEDYFHKKYNLT-ATHSEVLEAVQTVKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL 167 (287)
T ss_pred EEEEEcchhhHhhhhccc-cccHHHHHHhhccCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 568889999987554211 1112222222223446999999999999999999988999999999999999999999998
Q ss_pred CcEEEEEccHHH
Q 003969 649 KNCRFVCAKAED 660 (783)
Q Consensus 649 ~nv~f~~gDaed 660 (783)
++++..+|+..
T Consensus 168 -~v~~~~~D~~~ 178 (287)
T PRK12335 168 -NIRTGLYDINS 178 (287)
T ss_pred -ceEEEEechhc
Confidence 89999988765
No 107
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.61 E-value=4.4e-08 Score=96.81 Aligned_cols=74 Identities=18% Similarity=0.226 Sum_probs=66.5
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccC-CccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKK-GMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r-~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
.-+|||+|||.++.++++.+||-+|+ |....+|..+ ..+|+||.|+++-+|+.||..-||+.++|..|+|..+.
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 45799999999999999999999996 7777777643 46999999999999999999999999999999998763
No 108
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.61 E-value=1.7e-07 Score=101.63 Aligned_cols=82 Identities=26% Similarity=0.406 Sum_probs=65.0
Q ss_pred CeEEEECCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHHc
Q 003969 568 NLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEIN 646 (783)
Q Consensus 568 gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~n 646 (783)
.+.+.+.|+.=|-+-.+.+-.|.-..++.. ..++.+|||+|||||.+++..++.+ ++|+|+|+++.|++.|++|++.|
T Consensus 129 ~~~I~idPg~AFGTG~H~TT~lcl~~l~~~-~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N 207 (295)
T PF06325_consen 129 EIVIEIDPGMAFGTGHHPTTRLCLELLEKY-VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELN 207 (295)
T ss_dssp SEEEEESTTSSS-SSHCHHHHHHHHHHHHH-SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHT
T ss_pred cEEEEECCCCcccCCCCHHHHHHHHHHHHh-ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHc
Confidence 457889999777777666655554444443 3467899999999999999999985 68999999999999999999999
Q ss_pred CCCc
Q 003969 647 GIKN 650 (783)
Q Consensus 647 gl~n 650 (783)
++..
T Consensus 208 ~~~~ 211 (295)
T PF06325_consen 208 GVED 211 (295)
T ss_dssp T-TT
T ss_pred CCCe
Confidence 9965
No 109
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.61 E-value=1.1e-07 Score=99.92 Aligned_cols=69 Identities=32% Similarity=0.578 Sum_probs=61.6
Q ss_pred HhhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 593 i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
+..++...+|.+|||+|||||-+++.+++.+ .+|+|+|+|+.|++.|++.+...+..+++|+.+||+++
T Consensus 43 ~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~L 113 (238)
T COG2226 43 LISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENL 113 (238)
T ss_pred HHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhC
Confidence 3344455578999999999999999999997 79999999999999999999988887899999999985
No 110
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.60 E-value=3.5e-07 Score=96.95 Aligned_cols=69 Identities=23% Similarity=0.270 Sum_probs=60.2
Q ss_pred HhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHHHH
Q 003969 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAEDVM 662 (783)
Q Consensus 593 i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gDaed~l 662 (783)
+++.+. ..+.+|||+|||+|.+++.|++.+.+|+|||+++.|++.|++++...|+ .+++|+++|+.++.
T Consensus 37 ~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~ 106 (255)
T PRK11036 37 LLAELP-PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIA 106 (255)
T ss_pred HHHhcC-CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHh
Confidence 334443 3457999999999999999999999999999999999999999998887 57999999999864
No 111
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=98.60 E-value=7.2e-09 Score=72.40 Aligned_cols=27 Identities=56% Similarity=1.190 Sum_probs=22.9
Q ss_pred ccccccccccccccCCCCCCCccccCc
Q 003969 81 HKTSLCSYFRKVGTCCHGSTCRYAHGE 107 (783)
Q Consensus 81 ~kt~~c~~~~~~~~c~~g~~c~~ahg~ 107 (783)
|||.+|++|.+.|.|++|++|+|+|++
T Consensus 1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 1 YKTKLCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred CccccChhhccCCccCCCCCcCccCCC
Confidence 799999999999999999999999985
No 112
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.60 E-value=4e-07 Score=100.00 Aligned_cols=75 Identities=27% Similarity=0.422 Sum_probs=65.0
Q ss_pred HHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCC---EEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHH
Q 003969 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG---MVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662 (783)
Q Consensus 588 ~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~---~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l 662 (783)
.++..+++++.+.++.+|||+|||+|.+++.+++.+. .|+|||+++++++.|++|++.+|+.++.++++|+.+.+
T Consensus 67 ~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~ 144 (322)
T PRK13943 67 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGV 144 (322)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcc
Confidence 3555566667777889999999999999999998753 69999999999999999999999999999999987543
No 113
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.59 E-value=1.4e-07 Score=96.30 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=58.5
Q ss_pred ccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 597 ADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 597 l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
+...++.+|||+|||+|.+++.|++++.+|+|||+++.|++.|++++..+++.+++++++|+.++
T Consensus 26 l~~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~ 90 (197)
T PRK11207 26 VKVVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNL 90 (197)
T ss_pred cccCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhC
Confidence 34445689999999999999999999889999999999999999999999998899999998754
No 114
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.59 E-value=1.2e-07 Score=97.91 Aligned_cols=80 Identities=23% Similarity=0.357 Sum_probs=72.9
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhc-cceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 003969 164 VELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 164 ~~~~i~V~nLp~~~~~~~Lkklf~~~-~v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
..-.+.|--||..|+.++||.||... +|.++++++ |.+-|||||++-++++|++||..|||..+..|+|+|+-|+
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 34569999999999999999999999 588888876 6788999999999999999999999999999999999999
Q ss_pred CCCcc
Q 003969 239 PRSFD 243 (783)
Q Consensus 239 pr~~~ 243 (783)
|..+.
T Consensus 120 PSs~~ 124 (360)
T KOG0145|consen 120 PSSDS 124 (360)
T ss_pred CChhh
Confidence 87654
No 115
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.59 E-value=1.3e-07 Score=109.39 Aligned_cols=79 Identities=25% Similarity=0.251 Sum_probs=68.4
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCC--ceeEEEecCCC
Q 003969 164 VELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN--KTLKVANVVPR 240 (783)
Q Consensus 164 ~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~G--r~L~V~~A~pr 240 (783)
.-..|+|+||++.+++++|+++|++|| |..+++.+++++|+|||+|.+.++|.+||+.|||..+.| ++|+|..|++.
T Consensus 95 ~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 95 KVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPT 174 (481)
T ss_pred ceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCC
Confidence 345799999999999999999999996 666666666666899999999999999999999999965 48999988876
Q ss_pred Cc
Q 003969 241 SF 242 (783)
Q Consensus 241 ~~ 242 (783)
..
T Consensus 175 ~l 176 (481)
T TIGR01649 175 RL 176 (481)
T ss_pred Cc
Confidence 54
No 116
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.59 E-value=2.5e-07 Score=95.69 Aligned_cols=78 Identities=21% Similarity=0.295 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhhhcc--CCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHH
Q 003969 584 LAAEKLYSLGGDWAD--LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAED 660 (783)
Q Consensus 584 ~~ae~L~~~i~~~l~--~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gDaed 660 (783)
.+.+.++..+++++. ..++.+|||+|||+|.++..++....+|+|||++++|+..|++++..++. .++.|.++|+.+
T Consensus 36 ~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~ 115 (219)
T TIGR02021 36 EGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLS 115 (219)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhh
Confidence 445667777777776 45678999999999999999999888999999999999999999988777 579999999876
Q ss_pred H
Q 003969 661 V 661 (783)
Q Consensus 661 ~ 661 (783)
.
T Consensus 116 ~ 116 (219)
T TIGR02021 116 L 116 (219)
T ss_pred C
Confidence 4
No 117
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.57 E-value=2.3e-07 Score=95.96 Aligned_cols=75 Identities=17% Similarity=0.218 Sum_probs=66.1
Q ss_pred HHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 587 e~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
..++..+++++.+.++.+|||+|||+|.++..|++.. .+|++||+++++++.|++|++.+++.|++++++|+...
T Consensus 62 p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~ 139 (212)
T PRK13942 62 IHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLG 139 (212)
T ss_pred HHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccC
Confidence 4455666677778889999999999999999999875 59999999999999999999999999999999998653
No 118
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.57 E-value=6.6e-08 Score=108.81 Aligned_cols=82 Identities=22% Similarity=0.295 Sum_probs=70.4
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
.-+-.++|||||-++++++.|+..|++|| |..+.+.+ |+++||||++|.+.|+|.+|.+.|||.++-||.|+|..
T Consensus 275 ~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~ 354 (549)
T KOG0147|consen 275 TGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSV 354 (549)
T ss_pred ccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEE
Confidence 33344599999999999999999999995 65555554 78999999999999999999999999999999999998
Q ss_pred cCCCCcc
Q 003969 237 VVPRSFD 243 (783)
Q Consensus 237 A~pr~~~ 243 (783)
...+..+
T Consensus 355 v~~r~~~ 361 (549)
T KOG0147|consen 355 VTERVDT 361 (549)
T ss_pred eeeeccc
Confidence 7665443
No 119
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.56 E-value=2.1e-07 Score=95.01 Aligned_cols=93 Identities=23% Similarity=0.392 Sum_probs=75.2
Q ss_pred EEECCCccccCCH-HHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCC
Q 003969 571 FCISPTAFFQVNT-LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIK 649 (783)
Q Consensus 571 f~isp~sFfQvN~-~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~ 649 (783)
..+.-..+|.+.+ ..++.+...+.... ....|+|.+||.|.-++.+|.++..|++||++|.-|..|++|++..|+.
T Consensus 66 i~md~e~wfsvTpe~ia~~iA~~v~~~~---~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~ 142 (263)
T KOG2730|consen 66 IYMDREGWFSVTPEKIAEHIANRVVACM---NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVP 142 (263)
T ss_pred eeecccceEEeccHHHHHHHHHHHHHhc---CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCC
Confidence 3344455565554 45555655555543 3468999999999999999999999999999999999999999999995
Q ss_pred -cEEEEEccHHHHHHHHH
Q 003969 650 -NCRFVCAKAEDVMGSLL 666 (783)
Q Consensus 650 -nv~f~~gDaed~l~~l~ 666 (783)
.|+|+|||+.++...+.
T Consensus 143 ~rItFI~GD~ld~~~~lq 160 (263)
T KOG2730|consen 143 DRITFICGDFLDLASKLK 160 (263)
T ss_pred ceeEEEechHHHHHHHHh
Confidence 59999999999988765
No 120
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.55 E-value=1.2e-07 Score=93.84 Aligned_cols=76 Identities=17% Similarity=0.284 Sum_probs=66.8
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 163 DVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
+...+||||||+..+++.-|.+||-+.| |...++.+ ...+|||||+|.++|+|+=||+.||+..+-||.|+|+.|
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 4456799999999999999999999986 55555555 346799999999999999999999999999999999988
Q ss_pred C
Q 003969 238 V 238 (783)
Q Consensus 238 ~ 238 (783)
-
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 5
No 121
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.55 E-value=4.2e-07 Score=103.58 Aligned_cols=66 Identities=11% Similarity=0.247 Sum_probs=54.9
Q ss_pred HhhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccH
Q 003969 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKA 658 (783)
Q Consensus 593 i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~~gDa 658 (783)
+..++.+.++.+|||+|||+|..++.+++.. ++|+|+|+++.+++.+++|++.+|+. .+.++.+|+
T Consensus 230 ~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~ 298 (426)
T TIGR00563 230 VATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDG 298 (426)
T ss_pred HHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccc
Confidence 3444566788999999999999999999874 69999999999999999999999986 234466664
No 122
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.55 E-value=2e-07 Score=96.32 Aligned_cols=74 Identities=26% Similarity=0.359 Sum_probs=62.8
Q ss_pred HHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 587 e~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
..++..+++++.+.+|.+|||+|||+|.++..||+.+ .+|++||.++..++.|++|+...++.|+.++++|...
T Consensus 58 P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~ 134 (209)
T PF01135_consen 58 PSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSE 134 (209)
T ss_dssp HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGG
T ss_pred HHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhh
Confidence 4466677888889999999999999999999999875 3799999999999999999999999999999999754
No 123
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.54 E-value=1.4e-07 Score=105.79 Aligned_cols=76 Identities=21% Similarity=0.328 Sum_probs=68.3
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr 240 (783)
..++.|+||||.+...+|+.+|+.|| |..+.|.+ ++-.|||||.|..-.+|.+||+.|||..++||++-|-.|.++
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 66899999999999999999999996 66666665 455699999999999999999999999999999999888776
No 124
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.54 E-value=7.9e-07 Score=96.24 Aligned_cols=89 Identities=25% Similarity=0.317 Sum_probs=70.7
Q ss_pred CeEEEECCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHHc
Q 003969 568 NLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEIN 646 (783)
Q Consensus 568 gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~n 646 (783)
...+.+.|+..|.+-...+..|.-..++... .++.+|||+|||+|.+++.+++.+ .+|+|||+++.|++.|++|+..|
T Consensus 127 ~~~i~ldpg~aFgtG~h~tt~l~l~~l~~~~-~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n 205 (288)
T TIGR00406 127 ALIIMLDPGLAFGTGTHPTTSLCLEWLEDLD-LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELN 205 (288)
T ss_pred cEEEEECCCCcccCCCCHHHHHHHHHHHhhc-CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHc
Confidence 4678889999988766655555444444332 357899999999999999998875 59999999999999999999999
Q ss_pred CCC-cEEEEEcc
Q 003969 647 GIK-NCRFVCAK 657 (783)
Q Consensus 647 gl~-nv~f~~gD 657 (783)
++. ++.++.++
T Consensus 206 ~~~~~~~~~~~~ 217 (288)
T TIGR00406 206 QVSDRLQVKLIY 217 (288)
T ss_pred CCCcceEEEecc
Confidence 985 36666665
No 125
>PRK14968 putative methyltransferase; Provisional
Probab=98.53 E-value=4.2e-07 Score=90.68 Aligned_cols=61 Identities=25% Similarity=0.401 Sum_probs=55.2
Q ss_pred CCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCc--EEEEEccHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKN--CRFVCAKAED 660 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~n--v~f~~gDaed 660 (783)
.++.+|||+|||+|.+++.++....+|+|+|+++.+++.|++|+..+++.+ +.++.+|+.+
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~ 84 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE 84 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc
Confidence 567899999999999999999988999999999999999999999998865 8888888643
No 126
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.52 E-value=1.9e-07 Score=98.09 Aligned_cols=69 Identities=33% Similarity=0.579 Sum_probs=52.2
Q ss_pred HhhhccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 593 i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
+++.+...++.+|||+|||||.+++.|++.. .+|+|+|+++.|++.|++.+...+..+|+|+++|++++
T Consensus 39 ~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~l 110 (233)
T PF01209_consen 39 LIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDL 110 (233)
T ss_dssp HHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB-
T ss_pred HHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHh
Confidence 3444456678899999999999999999874 59999999999999999999988888999999999875
No 127
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=6.3e-08 Score=97.88 Aligned_cols=76 Identities=20% Similarity=0.244 Sum_probs=67.6
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 003969 166 LSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (783)
Q Consensus 166 ~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr 240 (783)
-.||||+|...++++-|-..|=+|| |....+.. .+.||||||+|.-.|+|..||+-||+.++-||+|+|+.|+|-
T Consensus 11 rtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~ 90 (298)
T KOG0111|consen 11 RTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPE 90 (298)
T ss_pred eeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCc
Confidence 3599999999999999999999994 65555554 688999999999999999999999999999999999999875
Q ss_pred C
Q 003969 241 S 241 (783)
Q Consensus 241 ~ 241 (783)
.
T Consensus 91 k 91 (298)
T KOG0111|consen 91 K 91 (298)
T ss_pred c
Confidence 3
No 128
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.51 E-value=1.1e-07 Score=104.11 Aligned_cols=79 Identities=18% Similarity=0.182 Sum_probs=70.1
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCc-cCCc--eeEEEe
Q 003969 164 VELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGIS-IGNK--TLKVAN 236 (783)
Q Consensus 164 ~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~-~~Gr--~L~V~~ 236 (783)
.+.|+|||.|++..++.+++.+|.+|| |..+.|.+ +.+||+|||+|.+.|.|..||+.|||.. +.|. .|.|+.
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKF 202 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEe
Confidence 378999999999999999999999997 77778777 6899999999999999999999999964 7885 799999
Q ss_pred cCCCCc
Q 003969 237 VVPRSF 242 (783)
Q Consensus 237 A~pr~~ 242 (783)
|.++.+
T Consensus 203 ADtqkd 208 (510)
T KOG0144|consen 203 ADTQKD 208 (510)
T ss_pred cccCCC
Confidence 976543
No 129
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.50 E-value=1.3e-06 Score=91.79 Aligned_cols=83 Identities=18% Similarity=0.097 Sum_probs=66.7
Q ss_pred cCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh---CCEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEE
Q 003969 580 QVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIK-NCRFVC 655 (783)
Q Consensus 580 QvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~---~~~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~~ 655 (783)
++.......|.. +... .+..+|||+|||+|..++.+++. ..+|+++|+++++++.|++|++.+|+. +++++.
T Consensus 51 ~v~~~~g~~L~~-l~~~---~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~ 126 (234)
T PLN02781 51 EVPVDEGLFLSM-LVKI---MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQ 126 (234)
T ss_pred ccCHHHHHHHHH-HHHH---hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE
Confidence 455555444433 3333 34679999999999999988875 369999999999999999999999995 699999
Q ss_pred ccHHHHHHHHH
Q 003969 656 AKAEDVMGSLL 666 (783)
Q Consensus 656 gDaed~l~~l~ 666 (783)
||+.+.++.+.
T Consensus 127 gda~~~L~~l~ 137 (234)
T PLN02781 127 SDALSALDQLL 137 (234)
T ss_pred ccHHHHHHHHH
Confidence 99999987764
No 130
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=3.7e-07 Score=98.54 Aligned_cols=83 Identities=24% Similarity=0.379 Sum_probs=65.5
Q ss_pred CCeEEEECCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHH
Q 003969 567 SNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEI 645 (783)
Q Consensus 567 ~gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~ 645 (783)
..+.+++.|+.=|-+-...+-.|.-..++... .++.+|||+|||+|.++++.++.+ ++|+|+|+++-||+.|+.|+++
T Consensus 129 ~~~~i~lDPGlAFGTG~HpTT~lcL~~Le~~~-~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~ 207 (300)
T COG2264 129 DELNIELDPGLAFGTGTHPTTSLCLEALEKLL-KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARL 207 (300)
T ss_pred CceEEEEccccccCCCCChhHHHHHHHHHHhh-cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHH
Confidence 35678888886666554444444433444332 378999999999999999999986 6799999999999999999999
Q ss_pred cCCCc
Q 003969 646 NGIKN 650 (783)
Q Consensus 646 ngl~n 650 (783)
|++..
T Consensus 208 N~v~~ 212 (300)
T COG2264 208 NGVEL 212 (300)
T ss_pred cCCch
Confidence 99974
No 131
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.50 E-value=2.1e-07 Score=107.37 Aligned_cols=74 Identities=23% Similarity=0.354 Sum_probs=65.1
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeecc-------CCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKK-------KGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~-------r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
..++||.||++..+.++|...|..+| |.+..|.++ .|||||||.|.++|+|+.|++.|+|..++|..|.|..
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 44599999999999999999999996 666656652 2679999999999999999999999999999999987
Q ss_pred cC
Q 003969 237 VV 238 (783)
Q Consensus 237 A~ 238 (783)
+.
T Consensus 595 S~ 596 (725)
T KOG0110|consen 595 SE 596 (725)
T ss_pred cc
Confidence 74
No 132
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.47 E-value=5e-07 Score=100.03 Aligned_cols=81 Identities=27% Similarity=0.325 Sum_probs=68.7
Q ss_pred CCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCC------------------------------------
Q 003969 581 VNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG------------------------------------ 624 (783)
Q Consensus 581 vN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~------------------------------------ 624 (783)
-....-+.|...++.+++-.++..++|-.||+|||.+..|..+.
T Consensus 171 g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~ 250 (381)
T COG0116 171 GPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARR 250 (381)
T ss_pred CCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhh
Confidence 33445666777777888878888999999999999999887753
Q ss_pred -----EEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHHH
Q 003969 625 -----MVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAEDV 661 (783)
Q Consensus 625 -----~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~~gDaed~ 661 (783)
.++|+|+++.+|+.|+.|++..|+. -|+|.++|+.++
T Consensus 251 ~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l 293 (381)
T COG0116 251 GKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDL 293 (381)
T ss_pred cCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhC
Confidence 3789999999999999999999995 499999999874
No 133
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.46 E-value=5.7e-07 Score=93.03 Aligned_cols=76 Identities=17% Similarity=0.261 Sum_probs=68.9
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
...++-|+|-||....++.-|..+|.+|| |+.++|++ .+=+|||||+|.+-+||.-||..|||+.+.+|.|.|+.
T Consensus 275 ~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsF 354 (360)
T KOG0145|consen 275 PGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 354 (360)
T ss_pred CCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEE
Confidence 33478899999999999999999999996 88888888 35689999999999999999999999999999999985
Q ss_pred c
Q 003969 237 V 237 (783)
Q Consensus 237 A 237 (783)
.
T Consensus 355 K 355 (360)
T KOG0145|consen 355 K 355 (360)
T ss_pred e
Confidence 4
No 134
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=4.6e-07 Score=94.40 Aligned_cols=78 Identities=17% Similarity=0.205 Sum_probs=68.8
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCCcc
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRSFD 243 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr~~~ 243 (783)
...|||||++..++++.|++.|+.|| |..++|-|. +||+||-|.+.|.|.+||..+||.++.|..+++.--+.-.+.
T Consensus 164 NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~--qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 164 NTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD--QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred CceEEeCCcCccccHHHHHHhcccCCcceEEEEecc--cceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCCC
Confidence 45799999999999999999999996 888887654 799999999999999999999999999999999876655544
Q ss_pred c
Q 003969 244 K 244 (783)
Q Consensus 244 k 244 (783)
+
T Consensus 242 ~ 242 (321)
T KOG0148|consen 242 I 242 (321)
T ss_pred C
Confidence 3
No 135
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.45 E-value=1.7e-06 Score=96.87 Aligned_cols=64 Identities=20% Similarity=0.351 Sum_probs=58.6
Q ss_pred CCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMG 663 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~ 663 (783)
..+..+||||||+|.+++.+|+.. ..++|||+++.+++.|.+++..+++.|+.++++|+..++.
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~ 186 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLE 186 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhh
Confidence 456799999999999999999984 6899999999999999999999999999999999987654
No 136
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=3.5e-07 Score=102.08 Aligned_cols=74 Identities=24% Similarity=0.331 Sum_probs=68.6
Q ss_pred EEEeCCCcccCHHHHHHHhhhcc-ceeeEeec--cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCCc
Q 003969 168 KCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK--KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRSF 242 (783)
Q Consensus 168 i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~--~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr~~ 242 (783)
|||.||+..++.++|..+|+.+| |.++++.+ ..++|| ||.|+++++|++||+.|||..+.|++|.|..+.++..
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 99999999999999999999995 99999988 348899 9999999999999999999999999999998876643
No 137
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.44 E-value=7.5e-07 Score=92.49 Aligned_cols=69 Identities=28% Similarity=0.504 Sum_probs=60.7
Q ss_pred HhhhccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 593 i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
++.++.+.++.+|||+|||+|.++..+++.. .+|+|+|+++.+++.|+.++..+++.+++++++|++++
T Consensus 37 ~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~ 108 (231)
T TIGR02752 37 TMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMEL 108 (231)
T ss_pred HHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcC
Confidence 4445566778899999999999999999863 59999999999999999999888888999999998764
No 138
>PLN02244 tocopherol O-methyltransferase
Probab=98.44 E-value=7.4e-07 Score=98.70 Aligned_cols=79 Identities=24% Similarity=0.329 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhhhccC-----CCCCeEEEecCCcCHHHHHHhhh-CCEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEE
Q 003969 583 TLAAEKLYSLGGDWADL-----GPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGI-KNCRFVC 655 (783)
Q Consensus 583 ~~~ae~L~~~i~~~l~~-----~~g~~VLDLgCGtGti~l~LA~~-~~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~ 655 (783)
..+...++..+++++.+ .++.+|||||||+|.+++.|++. ..+|+|||+++.+++.|++++..+++ .+++|++
T Consensus 95 ~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~ 174 (340)
T PLN02244 95 RQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQV 174 (340)
T ss_pred HHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEE
Confidence 34445577777777766 56789999999999999999987 47999999999999999999998888 4799999
Q ss_pred ccHHHH
Q 003969 656 AKAEDV 661 (783)
Q Consensus 656 gDaed~ 661 (783)
+|+.+.
T Consensus 175 ~D~~~~ 180 (340)
T PLN02244 175 ADALNQ 180 (340)
T ss_pred cCcccC
Confidence 998763
No 139
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.43 E-value=3.3e-06 Score=87.91 Aligned_cols=88 Identities=19% Similarity=0.209 Sum_probs=74.9
Q ss_pred CCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEE
Q 003969 574 SPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRF 653 (783)
Q Consensus 574 sp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f 653 (783)
.+.+|+|.+..+......++...+...++.+|||||||+|.++..+++...+|+++|+++.+++.|+.++..+++ ++.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~ 99 (233)
T PRK05134 21 DPNGEFKPLHRINPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGL-KIDY 99 (233)
T ss_pred ccCCCcHHHHHhhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCC-ceEE
Confidence 567788877777766667777776666788999999999999999999888999999999999999999887776 6889
Q ss_pred EEccHHHHH
Q 003969 654 VCAKAEDVM 662 (783)
Q Consensus 654 ~~gDaed~l 662 (783)
+.+++.++.
T Consensus 100 ~~~~~~~~~ 108 (233)
T PRK05134 100 RQTTAEELA 108 (233)
T ss_pred EecCHHHhh
Confidence 999988765
No 140
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.41 E-value=8.2e-07 Score=90.62 Aligned_cols=65 Identities=14% Similarity=0.100 Sum_probs=55.7
Q ss_pred hhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 595 ~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
+++....+.+|||+|||+|.+++.|++++.+|+|+|+++.|++.|++++..+++. +.+.++|+..
T Consensus 24 ~~~~~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~ 88 (195)
T TIGR00477 24 EAVKTVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLP-LRTDAYDINA 88 (195)
T ss_pred HHhccCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCC-ceeEeccchh
Confidence 3344445679999999999999999999889999999999999999999888885 7888888653
No 141
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.39 E-value=7.7e-07 Score=97.67 Aligned_cols=75 Identities=15% Similarity=0.258 Sum_probs=63.1
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCc-cCCc--eeEE
Q 003969 163 DVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGIS-IGNK--TLKV 234 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~-~~Gr--~L~V 234 (783)
.+..|+|||-+|+.|+|.|||.+|++|| |..+.++| +.++|+.||+|.+.++|.+||.+|+++. +-|- .|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 4567999999999999999999999996 55566666 5678999999999999999999999865 5664 5666
Q ss_pred Eec
Q 003969 235 ANV 237 (783)
Q Consensus 235 ~~A 237 (783)
+.|
T Consensus 112 k~A 114 (510)
T KOG0144|consen 112 KYA 114 (510)
T ss_pred ccc
Confidence 555
No 142
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.38 E-value=1.1e-06 Score=79.83 Aligned_cols=74 Identities=24% Similarity=0.338 Sum_probs=63.9
Q ss_pred cEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec-cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 003969 167 SKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK-KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (783)
Q Consensus 167 ~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~-~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr 240 (783)
=+||+|||+.++.+++-++|.+|| |.-.+|-- +..+|-|||.+++-.+|.+|++.|+|+-+.++-|.|---+|-
T Consensus 20 iLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 20 ILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred eEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 399999999999999999999997 44444332 467899999999999999999999999999999999766553
No 143
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.38 E-value=4.5e-07 Score=99.16 Aligned_cols=73 Identities=26% Similarity=0.329 Sum_probs=63.2
Q ss_pred HHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEc-cHHHH
Q 003969 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCA-KAEDV 661 (783)
Q Consensus 589 L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~g-Daed~ 661 (783)
|...+..++...+|..|||-+||||+|.+.+...+.+|+|+|++..|++-|+.|++..++....++.+ ||.++
T Consensus 185 lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~l 258 (347)
T COG1041 185 LARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNL 258 (347)
T ss_pred HHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccC
Confidence 34444555677889999999999999999999999999999999999999999999999988777776 87753
No 144
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.37 E-value=6.8e-07 Score=97.96 Aligned_cols=73 Identities=18% Similarity=0.308 Sum_probs=67.1
Q ss_pred ccc-EEEeCCCcccCHHHHHHHhhhc--cceeeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 165 ELS-KCLVHLPRKWHSDNLKKFLADH--GILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 165 ~~~-i~V~nLp~~~~~~~Lkklf~~~--~v~~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
-++ +||.|||+++.-.+||.|+.+. .|.|+.+.. +++||+|.|+|+++|-++||+|+||-++|+||.|+|++-
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 344 9999999999999999999977 588888776 789999999999999999999999999999999999865
No 145
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.37 E-value=2.3e-06 Score=93.81 Aligned_cols=63 Identities=14% Similarity=0.257 Sum_probs=52.0
Q ss_pred CCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHHc-CCC-cEEEEE-ccHHHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEIN-GIK-NCRFVC-AKAEDVMG 663 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~n-gl~-nv~f~~-gDaed~l~ 663 (783)
.+.++||||||+|.+...|+.+ ..+++|+|+++.|++.|++|++.| ++. +|+++. .+..+++.
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~ 181 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFK 181 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhh
Confidence 4578999999999999888765 469999999999999999999999 785 588864 45555443
No 146
>PHA03412 putative methyltransferase; Provisional
Probab=98.36 E-value=1.7e-06 Score=90.54 Aligned_cols=54 Identities=19% Similarity=0.369 Sum_probs=46.6
Q ss_pred CCeEEEecCCcCHHHHHHhhh-----CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 602 DTLLFDVCCGTGTIGLTLAHR-----VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 602 g~~VLDLgCGtGti~l~LA~~-----~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
+.+|||+|||+|.+++.+++. ..+|+|||+++.|++.|++|. .++.++++|+..
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~ 108 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----PEATWINADALT 108 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhc
Confidence 579999999999999999875 348999999999999999885 357899888764
No 147
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.36 E-value=9.5e-07 Score=94.11 Aligned_cols=70 Identities=17% Similarity=0.168 Sum_probs=59.7
Q ss_pred HHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 590 YSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 590 ~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
...+++.+.+.++.+|||+|||+|.+++.|++.+.+|+|||+++.+++.+++++.. ..+++++++|+.++
T Consensus 18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~ 87 (258)
T PRK14896 18 VDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKV 87 (258)
T ss_pred HHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccC
Confidence 34445555666788999999999999999999988999999999999999988754 46899999998764
No 148
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.36 E-value=2e-06 Score=91.31 Aligned_cols=71 Identities=14% Similarity=0.152 Sum_probs=59.5
Q ss_pred HHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 589 L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
+...+++.+...++.+|||+|||+|.++..|++.+..|+++|+++.+++.++.++.. ..+++++++|+.++
T Consensus 17 i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~ 87 (253)
T TIGR00755 17 VIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKV 87 (253)
T ss_pred HHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcC
Confidence 344455556667788999999999999999999998999999999999999987643 46799999998653
No 149
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.36 E-value=1.3e-06 Score=94.06 Aligned_cols=98 Identities=20% Similarity=0.243 Sum_probs=66.5
Q ss_pred eCCeEEEECCCccccCCH---HHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh-CCEEEEEeCCHHHHHHHHH
Q 003969 566 ISNLRFCISPTAFFQVNT---LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHR 641 (783)
Q Consensus 566 i~gl~f~isp~sFfQvN~---~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~-~~~VigVE~s~~AIe~Ak~ 641 (783)
++|-.+..|..-|-.... .+....+..+++.+.+.+|.+|||||||.|.+++.+|++ +.+|+||.+|++.++.|++
T Consensus 24 ~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~ 103 (273)
T PF02353_consen 24 FLDPTMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARE 103 (273)
T ss_dssp TS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHH
T ss_pred hcCCCCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHH
Confidence 344455666655544332 344557888999999999999999999999999999998 6799999999999999999
Q ss_pred HHHHcCCC-cEEEEEccHHHHHH
Q 003969 642 NAEINGIK-NCRFVCAKAEDVMG 663 (783)
Q Consensus 642 Na~~ngl~-nv~f~~gDaed~l~ 663 (783)
.++..|+. .+++.++|..++-.
T Consensus 104 ~~~~~gl~~~v~v~~~D~~~~~~ 126 (273)
T PF02353_consen 104 RIREAGLEDRVEVRLQDYRDLPG 126 (273)
T ss_dssp HHHCSTSSSTEEEEES-GGG---
T ss_pred HHHhcCCCCceEEEEeeccccCC
Confidence 99999995 59999999876544
No 150
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.36 E-value=4.1e-07 Score=94.36 Aligned_cols=80 Identities=24% Similarity=0.415 Sum_probs=72.0
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
..+|.+|+|-+||..+++.+|-.+|-.|| |.+.|+.. ..||-||||.|+|+..++.||..|||+.++=|.|+|-.
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 45688999999999999999999999996 77777776 57899999999999999999999999999999999987
Q ss_pred cCCCC
Q 003969 237 VVPRS 241 (783)
Q Consensus 237 A~pr~ 241 (783)
.+||.
T Consensus 362 KRPkd 366 (371)
T KOG0146|consen 362 KRPKD 366 (371)
T ss_pred cCccc
Confidence 76653
No 151
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.7e-06 Score=88.91 Aligned_cols=74 Identities=23% Similarity=0.268 Sum_probs=67.9
Q ss_pred HHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHH
Q 003969 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662 (783)
Q Consensus 589 L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l 662 (783)
+...+++++.+.++.+||++|||+|..+..||+.+.+|+.||..+..++.|++|++..|+.||.++++|...-.
T Consensus 60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~ 133 (209)
T COG2518 60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGW 133 (209)
T ss_pred HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCC
Confidence 44556778889999999999999999999999999999999999999999999999999999999999987643
No 152
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.34 E-value=6.5e-07 Score=93.23 Aligned_cols=63 Identities=27% Similarity=0.416 Sum_probs=58.9
Q ss_pred CCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~~ 664 (783)
.|.+|||+|||.|.++.+||+.++.|+|+|+++.+|+.|+..+..+++. +.|.+..++++...
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~-i~y~~~~~edl~~~ 121 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVN-IDYRQATVEDLASA 121 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcccc-ccchhhhHHHHHhc
Confidence 5789999999999999999999999999999999999999999999984 88999999998754
No 153
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.34 E-value=6.2e-08 Score=95.62 Aligned_cols=73 Identities=22% Similarity=0.296 Sum_probs=63.5
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
+--|||||||+..++.||--.|++|| +....+++ |+|+||+|.+++++-.---|+.-|||..+.||.|+|-..
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 34599999999999999999999996 33333333 899999999999999988999999999999999999755
No 154
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.33 E-value=1.7e-06 Score=94.89 Aligned_cols=61 Identities=25% Similarity=0.375 Sum_probs=53.6
Q ss_pred CCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHc-----CCCcEEEEEccHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN-----GIKNCRFVCAKAEDV 661 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~n-----gl~nv~f~~gDaed~ 661 (783)
++.+|||||||+|.+++.|++.+.+|+|+|+++.|++.|++++... +..++.|.++|++++
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l 209 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL 209 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc
Confidence 5679999999999999999999889999999999999999998764 234689999998653
No 155
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.32 E-value=5.3e-06 Score=95.41 Aligned_cols=64 Identities=20% Similarity=0.259 Sum_probs=58.6
Q ss_pred cCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 598 DLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 598 ~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
.+.+|.+|||+|||.|.-+..+|... +.|+++|+++.-++.+++|+++.|+.|+.+.+.|+..+
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~ 176 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVF 176 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhh
Confidence 55788999999999999999999874 68999999999999999999999999999999998764
No 156
>PHA03411 putative methyltransferase; Provisional
Probab=98.32 E-value=1.9e-06 Score=92.21 Aligned_cols=56 Identities=16% Similarity=0.386 Sum_probs=48.2
Q ss_pred CCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
.+.+|||+|||+|.+++.++++. .+|+|||+++.|++.|++|. .++.++++|+.++
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~ 121 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEF 121 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhh
Confidence 34689999999999999988763 69999999999999999873 3688999998764
No 157
>PLN02476 O-methyltransferase
Probab=98.32 E-value=7.4e-06 Score=88.13 Aligned_cols=84 Identities=21% Similarity=0.216 Sum_probs=69.0
Q ss_pred ccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh---CCEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEE
Q 003969 579 FQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIK-NCRFV 654 (783)
Q Consensus 579 fQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~---~~~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~ 654 (783)
.++.+.+...|...+ .. .+..+|||+|+|+|..++.+|.. .++|+++|.++++++.|++|++.+|+. +++++
T Consensus 100 ~~v~~~~g~lL~~L~-~~---~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li 175 (278)
T PLN02476 100 MQVSPDQAQLLAMLV-QI---LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVK 175 (278)
T ss_pred cccCHHHHHHHHHHH-Hh---cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 355666665554333 32 34679999999999999999985 358999999999999999999999995 79999
Q ss_pred EccHHHHHHHHH
Q 003969 655 CAKAEDVMGSLL 666 (783)
Q Consensus 655 ~gDaed~l~~l~ 666 (783)
.||+.+.|+.+.
T Consensus 176 ~GdA~e~L~~l~ 187 (278)
T PLN02476 176 HGLAAESLKSMI 187 (278)
T ss_pred EcCHHHHHHHHH
Confidence 999999998764
No 158
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.31 E-value=2.4e-06 Score=93.88 Aligned_cols=62 Identities=23% Similarity=0.413 Sum_probs=55.9
Q ss_pred CCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAEDV 661 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gDaed~ 661 (783)
.++.+|||||||+|.+++.|++.+.+|+|||+++.+++.|+.++...++ .+++|++++++++
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l 192 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKL 192 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHh
Confidence 4567999999999999999999888999999999999999999877665 5799999999875
No 159
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.30 E-value=1e-06 Score=79.92 Aligned_cols=56 Identities=34% Similarity=0.604 Sum_probs=49.0
Q ss_pred EEEecCCcCHHHHHHhhhC-----CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 605 LFDVCCGTGTIGLTLAHRV-----GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 605 VLDLgCGtGti~l~LA~~~-----~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
|||||||+|..+..+++.+ .+++|||++++|++.|+++....++ +++|+++|+.++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l 61 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDL 61 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCH
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHC
Confidence 7999999999999999886 7999999999999999999987777 799999999774
No 160
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.30 E-value=2.9e-06 Score=89.91 Aligned_cols=87 Identities=23% Similarity=0.375 Sum_probs=64.7
Q ss_pred eEEEECCCccccCCH-HHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHHc
Q 003969 569 LRFCISPTAFFQVNT-LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEIN 646 (783)
Q Consensus 569 l~f~isp~sFfQvN~-~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~n 646 (783)
..+.+.|+.-|.+-. ..+..++..+... ..++.+|||+|||+|.+++.+++.+ .+|+|+|+++.|++.|++|+..|
T Consensus 88 ~~i~i~p~~afgtg~h~tt~~~l~~l~~~--~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~ 165 (250)
T PRK00517 88 INIELDPGMAFGTGTHPTTRLCLEALEKL--VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELN 165 (250)
T ss_pred EEEEECCCCccCCCCCHHHHHHHHHHHhh--cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHc
Confidence 457778876665333 3333344444443 2467899999999999999888875 46999999999999999999999
Q ss_pred CC-CcEEEEEcc
Q 003969 647 GI-KNCRFVCAK 657 (783)
Q Consensus 647 gl-~nv~f~~gD 657 (783)
++ .++.+..++
T Consensus 166 ~~~~~~~~~~~~ 177 (250)
T PRK00517 166 GVELNVYLPQGD 177 (250)
T ss_pred CCCceEEEccCC
Confidence 98 456665554
No 161
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.30 E-value=2.7e-06 Score=91.23 Aligned_cols=78 Identities=19% Similarity=0.301 Sum_probs=70.2
Q ss_pred HHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHHHHHH
Q 003969 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAEDVMGS 664 (783)
Q Consensus 587 e~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~~gDaed~l~~ 664 (783)
..-++.+.+.+.+.+|++|||||||-|.+++.+|+.. .+|+||++|+++.+.|++.++..|+. ++++...|..++-..
T Consensus 58 ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~ 137 (283)
T COG2230 58 RAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP 137 (283)
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccc
Confidence 3456778888999999999999999999999999995 89999999999999999999999996 899999998876544
No 162
>PRK10742 putative methyltransferase; Provisional
Probab=98.28 E-value=3.8e-06 Score=88.45 Aligned_cols=73 Identities=15% Similarity=0.106 Sum_probs=63.2
Q ss_pred HHhhhccCCCCC--eEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHc------C--C-CcEEEEEccHHH
Q 003969 592 LGGDWADLGPDT--LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN------G--I-KNCRFVCAKAED 660 (783)
Q Consensus 592 ~i~~~l~~~~g~--~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~n------g--l-~nv~f~~gDaed 660 (783)
.+++.+++.+|. +|||+++|+|..++.++..+.+|++||-++.+....+.|++.. + + .+++++++|+.+
T Consensus 77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~ 156 (250)
T PRK10742 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT 156 (250)
T ss_pred HHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHH
Confidence 355666777777 8999999999999999999888999999999999999999874 3 2 579999999999
Q ss_pred HHHH
Q 003969 661 VMGS 664 (783)
Q Consensus 661 ~l~~ 664 (783)
+|..
T Consensus 157 ~L~~ 160 (250)
T PRK10742 157 ALTD 160 (250)
T ss_pred HHhh
Confidence 8864
No 163
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.27 E-value=1.6e-06 Score=81.42 Aligned_cols=72 Identities=11% Similarity=0.230 Sum_probs=61.7
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhccceeeEeec------cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEE
Q 003969 163 DVELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKK------KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~~~~~Lkklf~~~~v~~~~i~~------~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~ 235 (783)
..+..||||||+++++++++-+||++.|-. .+|+. +..-||.||.|-+.++|..|++-|||..++.|.|+|-
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~i-rriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDI-RRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccch-heeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 456779999999999999999999999632 23333 2445999999999999999999999999999999985
No 164
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.27 E-value=3.2e-06 Score=89.42 Aligned_cols=62 Identities=16% Similarity=0.352 Sum_probs=54.6
Q ss_pred CCCCeEEEecCCcCHHHHHHhhh----CCEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHR----VGMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAEDV 661 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~----~~~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~~gDaed~ 661 (783)
.++.+|||||||+|.+++.|++. ..+|+|||+++.|++.|++++..+++. +++++++|+.++
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~ 121 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI 121 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhC
Confidence 36789999999999999998873 369999999999999999999888874 799999998764
No 165
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.26 E-value=4.3e-06 Score=100.98 Aligned_cols=75 Identities=23% Similarity=0.317 Sum_probs=60.0
Q ss_pred HHHHHHHhhhccC-CCCCeEEEecCCcCHHHHHHhhhC------------------------------------------
Q 003969 587 EKLYSLGGDWADL-GPDTLLFDVCCGTGTIGLTLAHRV------------------------------------------ 623 (783)
Q Consensus 587 e~L~~~i~~~l~~-~~g~~VLDLgCGtGti~l~LA~~~------------------------------------------ 623 (783)
+.|...++.++.. .++..++|.+||+|||.+..|..+
T Consensus 175 etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~ 254 (702)
T PRK11783 175 ENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAE 254 (702)
T ss_pred HHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccc
Confidence 4444444444444 457899999999999999887531
Q ss_pred --CEEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEEccHHHH
Q 003969 624 --GMVIGIEMNASAVSDAHRNAEINGIKN-CRFVCAKAEDV 661 (783)
Q Consensus 624 --~~VigVE~s~~AIe~Ak~Na~~ngl~n-v~f~~gDaed~ 661 (783)
.+++|+|+++.|++.|+.|+..+|+.+ +.|.++|+.++
T Consensus 255 ~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~ 295 (702)
T PRK11783 255 LPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADL 295 (702)
T ss_pred cCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhc
Confidence 269999999999999999999999964 99999998874
No 166
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.26 E-value=9.3e-07 Score=92.95 Aligned_cols=71 Identities=21% Similarity=0.390 Sum_probs=64.8
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 003969 166 LSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (783)
Q Consensus 166 ~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr 240 (783)
+|++|||||...++.+|+.||++|| |....|+| .||||.+++...+..||.-|||+.+.|..|.|..++-|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK----NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK----NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec----ccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 5899999999999999999999995 88888765 59999999999999999999999999999999877544
No 167
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.25 E-value=3.2e-06 Score=90.24 Aligned_cols=69 Identities=25% Similarity=0.593 Sum_probs=56.5
Q ss_pred HhhhccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHH---cCCCcEEEEEccHHHH
Q 003969 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEI---NGIKNCRFVCAKAEDV 661 (783)
Q Consensus 593 i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~---ngl~nv~f~~gDaed~ 661 (783)
+.+++.+.++.+|||+|||+|.++..|++.. .+|+|||++++|++.|++++.. ....+++|+++|++++
T Consensus 65 ~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l 139 (261)
T PLN02233 65 AVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL 139 (261)
T ss_pred HHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC
Confidence 3445566678899999999999999999864 5999999999999999877542 2346899999998764
No 168
>PRK04457 spermidine synthase; Provisional
Probab=98.24 E-value=2.1e-05 Score=84.10 Aligned_cols=65 Identities=11% Similarity=0.185 Sum_probs=56.5
Q ss_pred CCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHHHHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAEDVMGSL 665 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gDaed~l~~l 665 (783)
...+|||||||+|.++..+++.. .+|++||+++++++.|+++....+. .+++++.+|+.+++...
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~ 133 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH 133 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC
Confidence 45789999999999999998874 6899999999999999999766554 67999999999988643
No 169
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.23 E-value=4.4e-06 Score=86.40 Aligned_cols=60 Identities=25% Similarity=0.440 Sum_probs=54.2
Q ss_pred CCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAE 659 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gDae 659 (783)
.++.+|||+|||+|.++..|++....|+|+|+++.+++.|++++...++ .++.|+.+|+.
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~ 122 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE 122 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch
Confidence 4567999999999999999999888899999999999999999988877 57999999954
No 170
>PRK04266 fibrillarin; Provisional
Probab=98.22 E-value=4.6e-06 Score=87.37 Aligned_cols=72 Identities=18% Similarity=0.134 Sum_probs=59.2
Q ss_pred HHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 586 AEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 586 ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
+..++..+ +.+.+.++.+|||+|||+|.+++.|++.. ++|+|+|+++.|++.+.++++. ..|+.++.+|+.+
T Consensus 58 ~~~ll~~~-~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~--~~nv~~i~~D~~~ 131 (226)
T PRK04266 58 AAAILKGL-KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE--RKNIIPILADARK 131 (226)
T ss_pred HHHHHhhH-hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh--cCCcEEEECCCCC
Confidence 33343333 45778889999999999999999999986 5999999999999999888764 3689999999864
No 171
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.20 E-value=7.1e-06 Score=84.60 Aligned_cols=89 Identities=20% Similarity=0.232 Sum_probs=69.0
Q ss_pred CCCccccCCHHHHHHHHHHHhhhccC----CCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCC
Q 003969 574 SPTAFFQVNTLAAEKLYSLGGDWADL----GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIK 649 (783)
Q Consensus 574 sp~sFfQvN~~~ae~L~~~i~~~l~~----~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~ 649 (783)
++.++|+.........+.++.+.+.. ..+.+|||+|||+|.++..+++...+|+|+|.++.+++.++.++..+++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~ 93 (224)
T TIGR01983 14 DPNGKFKPLHKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLL 93 (224)
T ss_pred CCCCcHHHHHHhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 34455554444444444555555442 34679999999999999999988788999999999999999999888876
Q ss_pred cEEEEEccHHHHH
Q 003969 650 NCRFVCAKAEDVM 662 (783)
Q Consensus 650 nv~f~~gDaed~l 662 (783)
++.|.++|+.++.
T Consensus 94 ~~~~~~~d~~~~~ 106 (224)
T TIGR01983 94 KIEYRCTSVEDLA 106 (224)
T ss_pred ceEEEeCCHHHhh
Confidence 7999999988764
No 172
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.18 E-value=1.2e-05 Score=69.80 Aligned_cols=59 Identities=27% Similarity=0.411 Sum_probs=50.3
Q ss_pred eEEEecCCcCHHHHHHhh-hCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHH
Q 003969 604 LLFDVCCGTGTIGLTLAH-RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662 (783)
Q Consensus 604 ~VLDLgCGtGti~l~LA~-~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l 662 (783)
+|||+|||+|.++..++. ...+++++|+++.++..++++...++..++.++.+|+.+..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELP 60 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhc
Confidence 489999999999999998 56899999999999999997655556678999999887653
No 173
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=1.9e-06 Score=96.22 Aligned_cols=80 Identities=28% Similarity=0.338 Sum_probs=72.2
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 003969 163 DVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
-....+||.||+..++.+.|++.|..+| |.+.+++. ++++|||||+|++.|+|.+|+..+||..+.|+.|.|..++
T Consensus 268 ~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~q 347 (369)
T KOG0123|consen 268 LQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQ 347 (369)
T ss_pred ccccccccccCccccchhHHHHHHhcccceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHh
Confidence 4466899999999999999999999995 88888777 7899999999999999999999999999999999999887
Q ss_pred CCCc
Q 003969 239 PRSF 242 (783)
Q Consensus 239 pr~~ 242 (783)
.+.+
T Consensus 348 r~~~ 351 (369)
T KOG0123|consen 348 RKED 351 (369)
T ss_pred hhcc
Confidence 4443
No 174
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.14 E-value=9.2e-06 Score=82.91 Aligned_cols=68 Identities=25% Similarity=0.251 Sum_probs=54.6
Q ss_pred HhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 593 i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
+++.+...+..++||||||.|..++.||+++-.|+++|.++.+++.+++-++..+++ |+..+.|+.++
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~~~ 89 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADLNDF 89 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGCCB
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecchhc
Confidence 334444556789999999999999999999999999999999999999999988886 99999997653
No 175
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.14 E-value=4.3e-06 Score=88.58 Aligned_cols=64 Identities=16% Similarity=0.160 Sum_probs=53.7
Q ss_pred HHHhhhccCCCCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 591 SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 591 ~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
..+++.+...++.+|||||||+|.++..|++. ..+|+|+|+++.|++.|+++ +++|+++|++++
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~ 84 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDVRDW 84 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhC
Confidence 34556666677889999999999999999988 46999999999999999763 477889998764
No 176
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.12 E-value=1.2e-05 Score=86.49 Aligned_cols=141 Identities=22% Similarity=0.318 Sum_probs=93.0
Q ss_pred CCCCcccc---cccccccccccCCCCCCCccccCcC-----ccCCCCCCCCCcchHHHHhhhhhcccchhhhhhhhhHHh
Q 003969 76 SLHPLHKT---SLCSYFRKVGTCCHGSTCRYAHGEE-----ELRIRPDNTWDPTSERAKKARKLEDGDKCEAKEDAVEEV 147 (783)
Q Consensus 76 ~~~~~~kt---~~c~~~~~~~~c~~g~~c~~ahg~~-----elr~~~~~~~~~~s~r~k~~~k~e~~E~~~~~e~~~~~~ 147 (783)
.+.+.||- -+|.+|.. |.|..|+.|-|-|--- -++..+++.|.....=+.+.-.- .+ .
T Consensus 151 rt~p~ykrn~p~Icsf~v~-geckRG~ec~yrhEkp~d~~L~~qni~dryyg~ndPva~kil~r-a~------------~ 216 (377)
T KOG0153|consen 151 RTTPYYKRNRPHICSFFVK-GECKRGAECPYRHEKPPDDPLSLQNIKDRYYGLNDPVALKILNR-AG------------S 216 (377)
T ss_pred ccCccccCCCCccccceee-ccccccccccccccCCCCcchhhcccccccccccChHHHHHHhh-cc------------c
Confidence 44566664 48999988 6999999999999643 11222222211111112121111 00 0
Q ss_pred hhhccccCCCCCCCCCccc-cEEEeCCCcccCHHHHHHHhhhc-cceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcC-
Q 003969 148 MMTEAVVDGDGDGDQDVEL-SKCLVHLPRKWHSDNLKKFLADH-GILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEG- 224 (783)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~-~i~V~nLp~~~~~~~Lkklf~~~-~v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG- 224 (783)
|-+ .+.. ++..+ .+|||||-..+.+.+|++.|.+| +|.+..+..+ ++.|||+|.+.+.|++|.+++-.
T Consensus 217 ~~~---lepP----eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~--~~CAFv~ftTR~aAE~Aae~~~n~ 287 (377)
T KOG0153|consen 217 AGT---LEPP----EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR--KGCAFVTFTTREAAEKAAEKSFNK 287 (377)
T ss_pred ccc---cCCC----cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc--cccceeeehhhHHHHHHHHhhcce
Confidence 001 0111 22333 59999998899999999999999 4877777655 56999999999999999877654
Q ss_pred CccCCceeEEEecCC
Q 003969 225 ISIGNKTLKVANVVP 239 (783)
Q Consensus 225 ~~~~Gr~L~V~~A~p 239 (783)
..++|+.|+|....|
T Consensus 288 lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 288 LVINGFRLKIKWGRP 302 (377)
T ss_pred eeecceEEEEEeCCC
Confidence 557999999987766
No 177
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.12 E-value=1.2e-05 Score=84.43 Aligned_cols=62 Identities=19% Similarity=0.381 Sum_probs=53.9
Q ss_pred CCCCeEEEecCCcCHHHHHHhhh----CCEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHR----VGMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAEDV 661 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~----~~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gDaed~ 661 (783)
.++.+|||||||+|.++..+++. ..+|+|||+++.|++.|++++...+. .+++|+++|+.++
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~ 118 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV 118 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhC
Confidence 36679999999999999999885 35899999999999999999887664 4799999999864
No 178
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.11 E-value=7.7e-06 Score=87.35 Aligned_cols=65 Identities=32% Similarity=0.497 Sum_probs=57.0
Q ss_pred ccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 597 ADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 597 l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
+.+.++.+|||+|||+|..++.+++.. .+|+|||+++.+++.|++|+..+++.+++|+.+|++++
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l 140 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEAL 140 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhC
Confidence 345678999999999999998877753 47999999999999999999999998999999998763
No 179
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.11 E-value=2.4e-06 Score=91.88 Aligned_cols=70 Identities=20% Similarity=0.330 Sum_probs=62.3
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhcc-ceeeEee----ccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEE
Q 003969 166 LSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAK----KKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235 (783)
Q Consensus 166 ~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~----~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~ 235 (783)
.+||||.+.+...++-+|..|..|| |.+..+. +++.+||+||+++-+|.|+-|++.|||..++||.|+|.
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 188 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCcccccc
Confidence 4799999999999999999999996 4433322 27889999999999999999999999999999999997
No 180
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.10 E-value=2.2e-05 Score=83.16 Aligned_cols=73 Identities=18% Similarity=0.269 Sum_probs=63.9
Q ss_pred cc-cEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 165 EL-SKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 165 ~~-~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
.| .|||+-|++.+++..|++-|+.|| |.-..++. ++++|||||.|.++-++..|.+..+|..++|+.|-|-.-
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 44 699999999999999999999995 54444443 899999999999999999999999999999999888544
No 181
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.08 E-value=8.1e-06 Score=86.36 Aligned_cols=68 Identities=21% Similarity=0.281 Sum_probs=55.9
Q ss_pred HHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 589 L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
....++..+.+.++.+|||||||+|.++..|++.. .+|+|||+++.+++.|+++. .++.|+.+|+.++
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~ 88 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASW 88 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhcc
Confidence 33445555666778899999999999999999874 79999999999999998763 4688999998754
No 182
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.07 E-value=6.1e-06 Score=82.38 Aligned_cols=78 Identities=24% Similarity=0.305 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhhhcc---CCCCC-eEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEE
Q 003969 583 TLAAEKLYSLGGDWAD---LGPDT-LLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKN-CRFVC 655 (783)
Q Consensus 583 ~~~ae~L~~~i~~~l~---~~~g~-~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~n-v~f~~ 655 (783)
..+.+++.+|+.+.+. +.+.. +|||||||.|.+...|++.. ...+|||.++.||+.|+.-|+..+++| |+|.+
T Consensus 45 ~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q 124 (227)
T KOG1271|consen 45 EDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQ 124 (227)
T ss_pred CcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEE
Confidence 3455667777776654 33333 99999999999999999874 469999999999999999999999988 99999
Q ss_pred ccHHH
Q 003969 656 AKAED 660 (783)
Q Consensus 656 gDaed 660 (783)
.|+.+
T Consensus 125 ~DI~~ 129 (227)
T KOG1271|consen 125 LDITD 129 (227)
T ss_pred eeccC
Confidence 99876
No 183
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.07 E-value=5e-06 Score=87.40 Aligned_cols=63 Identities=22% Similarity=0.363 Sum_probs=52.8
Q ss_pred CCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCC------cEEEEEccHHHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIK------NCRFVCAKAEDVMG 663 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~------nv~f~~gDaed~l~ 663 (783)
-|..|||+|||+|.++.+||+.++.|+|||.++.||+.|++.+..+-.. .++|.+.++++..+
T Consensus 89 ~g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~ 157 (282)
T KOG1270|consen 89 LGMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTG 157 (282)
T ss_pred CCceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhccc
Confidence 3678999999999999999999999999999999999999996544331 36788888877543
No 184
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.07 E-value=1.5e-05 Score=87.75 Aligned_cols=73 Identities=14% Similarity=0.135 Sum_probs=57.1
Q ss_pred HHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHHH
Q 003969 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAEDV 661 (783)
Q Consensus 589 L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gDaed~ 661 (783)
.+..+...+....+.+|||||||+|.+++.++..+ ..|+|||.++.++..++...+..+. .++.|+.++++++
T Consensus 110 k~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l 184 (322)
T PRK15068 110 KWDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL 184 (322)
T ss_pred HHHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC
Confidence 35556666665678899999999999999999875 5799999999998776654444332 4799999998764
No 185
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.04 E-value=8.6e-06 Score=82.37 Aligned_cols=73 Identities=19% Similarity=0.290 Sum_probs=62.3
Q ss_pred cEEEeCCCcccCHHHHHHHhhhc-cc-eeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 003969 167 SKCLVHLPRKWHSDNLKKFLADH-GI-LYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (783)
Q Consensus 167 ~i~V~nLp~~~~~~~Lkklf~~~-~v-~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~p 239 (783)
-+||+.+|.-+-+.++..+|.++ |. ...++-+ |.|+|||||.|+++|.|.-|.+.||+|.+.|+-|.|.---|
T Consensus 51 ~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmpp 129 (214)
T KOG4208|consen 51 VVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPP 129 (214)
T ss_pred ceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCc
Confidence 48999999999999999999999 43 3333312 78999999999999999999999999999999999875443
No 186
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.04 E-value=8.4e-06 Score=80.96 Aligned_cols=77 Identities=18% Similarity=0.283 Sum_probs=68.2
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhccceee--Eeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEE
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGILYK--SAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~v~~~--~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~ 235 (783)
-..+-+++||||...++++.|-+.|+.+|+-.. +++. +.++|||||.|++-|.+++||+.|||+.+.+|+++|.
T Consensus 93 l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ 172 (203)
T KOG0131|consen 93 LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVS 172 (203)
T ss_pred ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEE
Confidence 455678999999999999999999999985444 5554 6788999999999999999999999999999999999
Q ss_pred ecC
Q 003969 236 NVV 238 (783)
Q Consensus 236 ~A~ 238 (783)
-|.
T Consensus 173 ya~ 175 (203)
T KOG0131|consen 173 YAF 175 (203)
T ss_pred EEE
Confidence 885
No 187
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.04 E-value=3.9e-05 Score=83.06 Aligned_cols=69 Identities=19% Similarity=0.291 Sum_probs=61.1
Q ss_pred ccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHH
Q 003969 597 ADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665 (783)
Q Consensus 597 l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~~l 665 (783)
+.+.++..|||+|+|.|+-+..++... +.|+++|++..-+...+.|+++.|+.++..+..|+....+..
T Consensus 81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~ 152 (283)
T PF01189_consen 81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKK 152 (283)
T ss_dssp HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHH
T ss_pred ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccc
Confidence 456788999999999999999999874 599999999999999999999999999999999988876543
No 188
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=97.98 E-value=1.9e-05 Score=83.21 Aligned_cols=65 Identities=14% Similarity=0.191 Sum_probs=52.2
Q ss_pred HHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 591 SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 591 ~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
..+++.+....+.+|||+|||+|.++..|+..+.+|+|+|+++.|++.|+.+.. .+.|+++|+++
T Consensus 32 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~ 96 (251)
T PRK10258 32 DALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIES 96 (251)
T ss_pred HHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC-----CCCEEEcCccc
Confidence 334454544456799999999999999999888899999999999999988742 24678888765
No 189
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.98 E-value=1.3e-05 Score=82.66 Aligned_cols=56 Identities=18% Similarity=0.173 Sum_probs=47.5
Q ss_pred CCCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
.++.+|||+|||+|.++..|++. ..+|+|||+++.|++.|+++. .++.++.+|+.+
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~ 99 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD 99 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC
Confidence 35678999999999999999887 479999999999999999863 356788888664
No 190
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=97.97 E-value=3.2e-06 Score=93.13 Aligned_cols=42 Identities=43% Similarity=0.699 Sum_probs=38.2
Q ss_pred CCCCCCcccccccccccccccCCCCCCCccccCcCccCCCCC
Q 003969 74 SPSLHPLHKTSLCSYFRKVGTCCHGSTCRYAHGEEELRIRPD 115 (783)
Q Consensus 74 ~~~~~~~~kt~~c~~~~~~~~c~~g~~c~~ahg~~elr~~~~ 115 (783)
....+..|||.+|.+|.+.|.|+||.+|+|+|+..|++....
T Consensus 168 ~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~~~~~ 209 (332)
T KOG1677|consen 168 QVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDRASNR 209 (332)
T ss_pred hhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCcccccccc
Confidence 556789999999999999999999999999999999997654
No 191
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.97 E-value=1.9e-05 Score=82.08 Aligned_cols=62 Identities=19% Similarity=0.236 Sum_probs=49.5
Q ss_pred CCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHc------------CCCcEEEEEccHHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN------------GIKNCRFVCAKAEDV 661 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~n------------gl~nv~f~~gDaed~ 661 (783)
.++.+|||+|||.|..++.||.++..|+|||+|+.||+.|...+... .-.+|+|+++|+.++
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~ 106 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFAL 106 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCC
Confidence 35679999999999999999999999999999999999874322110 112589999998764
No 192
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.96 E-value=4.6e-05 Score=78.75 Aligned_cols=83 Identities=17% Similarity=0.180 Sum_probs=66.7
Q ss_pred CCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh---CCEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEc
Q 003969 581 VNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCA 656 (783)
Q Consensus 581 vN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~---~~~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~~g 656 (783)
+.+..... +..++... ...+||+||||+|.-++++|+. .++|+.||.+++.++.|++|++..|+. +|+++.|
T Consensus 29 i~~~~g~l-L~~l~~~~---~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~g 104 (205)
T PF01596_consen 29 ISPETGQL-LQMLVRLT---RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEG 104 (205)
T ss_dssp HHHHHHHH-HHHHHHHH---T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES
T ss_pred cCHHHHHH-HHHHHHhc---CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence 44444443 34444443 3469999999999999999986 369999999999999999999999994 6999999
Q ss_pred cHHHHHHHHHh
Q 003969 657 KAEDVMGSLLK 667 (783)
Q Consensus 657 Daed~l~~l~~ 667 (783)
|+.++++.+..
T Consensus 105 da~~~l~~l~~ 115 (205)
T PF01596_consen 105 DALEVLPELAN 115 (205)
T ss_dssp -HHHHHHHHHH
T ss_pred ccHhhHHHHHh
Confidence 99999998764
No 193
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.95 E-value=2.7e-05 Score=84.55 Aligned_cols=78 Identities=19% Similarity=0.243 Sum_probs=67.7
Q ss_pred HHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHH
Q 003969 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMG 663 (783)
Q Consensus 587 e~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~ 663 (783)
.+|.+.+++.+.+.++..+||.+||.|..++.+++.. .+|+|+|.+++|++.|++.+.. ..++++++++..++..
T Consensus 5 pVll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~ 82 (296)
T PRK00050 5 PVLLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKE 82 (296)
T ss_pred cccHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHH
Confidence 3577788888888888999999999999999999885 6999999999999999988754 5689999999999865
Q ss_pred HHH
Q 003969 664 SLL 666 (783)
Q Consensus 664 ~l~ 666 (783)
.+.
T Consensus 83 ~l~ 85 (296)
T PRK00050 83 VLA 85 (296)
T ss_pred HHH
Confidence 543
No 194
>PRK00811 spermidine synthase; Provisional
Probab=97.93 E-value=8e-05 Score=80.58 Aligned_cols=64 Identities=11% Similarity=0.093 Sum_probs=54.3
Q ss_pred CCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHHc--C---CCcEEEEEccHHHHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEIN--G---IKNCRFVCAKAEDVMGS 664 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~n--g---l~nv~f~~gDaed~l~~ 664 (783)
...+||+||||.|.++..++++ ..+|++||+++.+++.|+++.... + -.+++++.+|+.+++..
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~ 146 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE 146 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh
Confidence 4578999999999999998886 479999999999999999987643 2 24699999999998754
No 195
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.92 E-value=8.8e-05 Score=76.74 Aligned_cols=52 Identities=17% Similarity=0.296 Sum_probs=43.7
Q ss_pred CCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 599 LGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 599 ~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
+.++.+|||||||+|.++..+++.. .+|+|||+++ .+.+.++.++++|+.+.
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-----------~~~~~~v~~i~~D~~~~ 103 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-----------MDPIVGVDFLQGDFRDE 103 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-----------ccCCCCcEEEecCCCCh
Confidence 3567899999999999999999874 5899999988 13456799999998874
No 196
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.92 E-value=0.00011 Score=74.24 Aligned_cols=61 Identities=21% Similarity=0.386 Sum_probs=46.9
Q ss_pred HHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 589 L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
+......+..+.++.+|||+|||+|.++..+++.. .+|+|||+++.+ ...++.++++|+.+
T Consensus 20 ~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~ 83 (188)
T TIGR00438 20 LLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTD 83 (188)
T ss_pred HHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCC
Confidence 33344445556788999999999999999998764 479999999864 23568899998865
No 197
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.92 E-value=2.4e-05 Score=80.33 Aligned_cols=78 Identities=27% Similarity=0.312 Sum_probs=69.0
Q ss_pred cEEEeCCCcccCHHHHHH----Hhhhcc-ceeeEeec-cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 003969 167 SKCLVHLPRKWHSDNLKK----FLADHG-ILYKSAKK-KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (783)
Q Consensus 167 ~i~V~nLp~~~~~~~Lkk----lf~~~~-v~~~~i~~-~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr 240 (783)
.|||.||+..+.-++||+ ||++|| |..+.+-+ .+.+|=|||.|.+.+.|..|+..|+|+.|=|+.+++--|+.+
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~ 90 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSD 90 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCc
Confidence 899999999999999999 999997 55554444 678899999999999999999999999999999999988776
Q ss_pred Cccc
Q 003969 241 SFDK 244 (783)
Q Consensus 241 ~~~k 244 (783)
.+..
T Consensus 91 sdii 94 (221)
T KOG4206|consen 91 SDII 94 (221)
T ss_pred cchh
Confidence 5553
No 198
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.91 E-value=1.4e-05 Score=80.01 Aligned_cols=58 Identities=28% Similarity=0.366 Sum_probs=55.7
Q ss_pred CeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 603 TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 603 ~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
..+.|||+|+|.+++..|+.+.+|++||.+|.-.+.|++|+..+|..|++++.||+.+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~ 91 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARD 91 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccc
Confidence 6899999999999999999999999999999999999999999999999999999966
No 199
>PRK03612 spermidine synthase; Provisional
Probab=97.91 E-value=5.1e-05 Score=88.83 Aligned_cols=65 Identities=11% Similarity=0.088 Sum_probs=53.4
Q ss_pred CCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHH---c--CC--CcEEEEEccHHHHHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEI---N--GI--KNCRFVCAKAEDVMGS 664 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~---n--gl--~nv~f~~gDaed~l~~ 664 (783)
.+..+|||+|||+|.++..++++. .+|++||+++++++.|++|... + .+ .+++++.+|+.+++..
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~ 369 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK 369 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh
Confidence 346789999999999999988873 6999999999999999996322 1 22 4699999999988754
No 200
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.90 E-value=6.1e-06 Score=85.26 Aligned_cols=100 Identities=17% Similarity=0.239 Sum_probs=73.0
Q ss_pred ccccceEEeeCCeEEEECCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCC-EEEEEeCCHHH
Q 003969 557 VVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG-MVIGIEMNASA 635 (783)
Q Consensus 557 ~G~~~I~E~i~gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~-~VigVE~s~~A 635 (783)
.|.++| .|+|++++-+.. +++.. ..+. =...+.+..|.+|||-|.|-|.++++..++++ +|+.||.++..
T Consensus 99 ~G~PTi--EIdGIrMhrt~~----tdP~~-Dt~~--Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~V 169 (287)
T COG2521 99 PGAPTI--EIDGIRMHRTKG----TDPLE-DTLA--KVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNV 169 (287)
T ss_pred CCCCeE--EEccEEEecccC----cCcHH-HHHh--hhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCe
Confidence 355555 578888774432 33311 0111 12334566799999999999999999999987 99999999999
Q ss_pred HHHHHHHHHHcCCC--cEEEEEccHHHHHHHH
Q 003969 636 VSDAHRNAEINGIK--NCRFVCAKAEDVMGSL 665 (783)
Q Consensus 636 Ie~Ak~Na~~ngl~--nv~f~~gDaed~l~~l 665 (783)
++.|+-|--.-++. +++++.||+.++++.+
T Consensus 170 LeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~ 201 (287)
T COG2521 170 LELAKLNPWSRELFEIAIKIILGDAYEVVKDF 201 (287)
T ss_pred EEeeccCCCCccccccccEEecccHHHHHhcC
Confidence 99999885444442 5899999999988765
No 201
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.90 E-value=4.6e-05 Score=85.86 Aligned_cols=74 Identities=22% Similarity=0.276 Sum_probs=61.2
Q ss_pred HHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 585 ~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~-~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
+....+..+++.+.+.++.+|||+|||+|.+++.+++. ..+|+|||+++++++.|++++. ++ ++++..+|+.++
T Consensus 151 Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~~~l 225 (383)
T PRK11705 151 AQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL-PVEIRLQDYRDL 225 (383)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC-eEEEEECchhhc
Confidence 33445667777788888999999999999999999986 4699999999999999999874 44 478888887653
No 202
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=97.89 E-value=6e-05 Score=82.72 Aligned_cols=77 Identities=12% Similarity=0.067 Sum_probs=59.5
Q ss_pred HHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHHcC-CCcEEEEEccHHHH
Q 003969 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEING-IKNCRFVCAKAEDV 661 (783)
Q Consensus 585 ~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~ng-l~nv~f~~gDaed~ 661 (783)
+....+..++..+...++.+|||+|||+|.+++.++..+ ..|+|||.++.++..++...+..+ ..++.+..++++++
T Consensus 105 ~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~l 183 (314)
T TIGR00452 105 RSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQL 183 (314)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHC
Confidence 355566778887777788999999999999999888775 589999999999987655433322 24688888887764
No 203
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=97.89 E-value=4.1e-05 Score=79.15 Aligned_cols=69 Identities=28% Similarity=0.571 Sum_probs=57.7
Q ss_pred HhhhccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHHH
Q 003969 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAEDV 661 (783)
Q Consensus 593 i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gDaed~ 661 (783)
++..+...++.+|||+|||+|.+++.++... .+|+++|+++.+++.|++++..+++ .++.|+.+|+.+.
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 115 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL 115 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccC
Confidence 3444445567899999999999999999876 7999999999999999999877665 4699999998764
No 204
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=97.89 E-value=3.1e-05 Score=82.79 Aligned_cols=67 Identities=13% Similarity=0.082 Sum_probs=55.9
Q ss_pred HHhhhccCCCCCeEEEecCCcCHHHHHHhhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 592 ~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~-~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
.++..+.+.++.+|||||||+|.++..|++. ..+|+|+|+++.+++.|++++.. ..++.|+++|+.+
T Consensus 43 ~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~ 110 (263)
T PTZ00098 43 KILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILK 110 (263)
T ss_pred HHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCccc
Confidence 3455567778899999999999999999876 45999999999999999988653 3469999999864
No 205
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=4.5e-05 Score=85.15 Aligned_cols=67 Identities=19% Similarity=0.332 Sum_probs=59.7
Q ss_pred hhccCCCCCeEEEecCCcCHHHHHHhhhC----CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRV----GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 595 ~~l~~~~g~~VLDLgCGtGti~l~LA~~~----~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
..+.+.+|.+|||+|++.|.=|..+|... ..|+++|.++.-++..+.|+++.|+.|+..++.|+..+
T Consensus 150 ~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~ 220 (355)
T COG0144 150 LVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRL 220 (355)
T ss_pred HHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccc
Confidence 45677889999999999999999999875 35799999999999999999999999999999887654
No 206
>PRK08317 hypothetical protein; Provisional
Probab=97.87 E-value=5.7e-05 Score=77.69 Aligned_cols=71 Identities=28% Similarity=0.382 Sum_probs=58.2
Q ss_pred HHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 589 L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
+...+.+++.+.++.+|||+|||+|.++..++... .+|+|+|+++.+++.|+++.. ....++.|+.+|+.+
T Consensus 7 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~-~~~~~~~~~~~d~~~ 80 (241)
T PRK08317 7 YRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA-GLGPNVEFVRGDADG 80 (241)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh-CCCCceEEEeccccc
Confidence 34456677777888999999999999999999874 589999999999999999833 233578999988765
No 207
>PLN03075 nicotianamine synthase; Provisional
Probab=97.86 E-value=0.00015 Score=78.75 Aligned_cols=61 Identities=21% Similarity=0.166 Sum_probs=49.4
Q ss_pred CCCeEEEecCCcCHH-HHHHhh-h--CCEEEEEeCCHHHHHHHHHHHHH-cCCC-cEEEEEccHHHH
Q 003969 601 PDTLLFDVCCGTGTI-GLTLAH-R--VGMVIGIEMNASAVSDAHRNAEI-NGIK-NCRFVCAKAEDV 661 (783)
Q Consensus 601 ~g~~VLDLgCGtGti-~l~LA~-~--~~~VigVE~s~~AIe~Ak~Na~~-ngl~-nv~f~~gDaed~ 661 (783)
+..+|+|+|||.|.+ ++.+++ . ..+++|+|++++|++.|++++.. .++. +++|..+|+.+.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~ 189 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDV 189 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhc
Confidence 568999999997744 445553 3 35899999999999999999964 7885 599999999773
No 208
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.86 E-value=3.7e-05 Score=78.32 Aligned_cols=65 Identities=15% Similarity=0.299 Sum_probs=50.0
Q ss_pred ccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHH
Q 003969 597 ADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMG 663 (783)
Q Consensus 597 l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~ 663 (783)
++-..-.++||+|||.|.++..||.++.+++++|+++.||+.|++.+. +..+|+|+++++.+..+
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~--~~~~V~~~~~dvp~~~P 103 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLA--GLPHVEWIQADVPEFWP 103 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTT--T-SSEEEEES-TTT---
T ss_pred cCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcC--CCCCeEEEECcCCCCCC
Confidence 333334689999999999999999999999999999999999998765 56899999999977644
No 209
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.86 E-value=5.1e-05 Score=87.57 Aligned_cols=66 Identities=20% Similarity=0.288 Sum_probs=53.1
Q ss_pred HhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 593 i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
++.++...++.+|||||||+|.++..|++.+.+|+|||+++.|++.++... ....++.|+++|+.+
T Consensus 29 il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~--~~~~~i~~~~~d~~~ 94 (475)
T PLN02336 29 ILSLLPPYEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESIN--GHYKNVKFMCADVTS 94 (475)
T ss_pred HHhhcCccCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHh--ccCCceEEEEecccc
Confidence 444555556779999999999999999999999999999999998765421 224689999999853
No 210
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.86 E-value=3.5e-05 Score=78.27 Aligned_cols=69 Identities=16% Similarity=0.405 Sum_probs=56.1
Q ss_pred HHHhhhccCCCCCeEEEecCCcCHHHHHHhhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHHhh
Q 003969 591 SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKD 668 (783)
Q Consensus 591 ~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~-~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~~l~~~ 668 (783)
+.|.+|+. +|.+|||||||.|.+...|.+. ...++|||++++.|..+.++ |+ .++++|+++-|..+...
T Consensus 5 ~~I~~~I~--pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r----Gv---~Viq~Dld~gL~~f~d~ 74 (193)
T PF07021_consen 5 QIIAEWIE--PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR----GV---SVIQGDLDEGLADFPDQ 74 (193)
T ss_pred HHHHHHcC--CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc----CC---CEEECCHHHhHhhCCCC
Confidence 45667765 6789999999999999999875 46899999999998887754 54 59999999987765543
No 211
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=0.00015 Score=77.16 Aligned_cols=72 Identities=15% Similarity=0.181 Sum_probs=63.4
Q ss_pred HHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 588 ~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
.+.+.|++.+.+.++..||++|+|.|.+|..|++++.+|++||+++..+...++... ...|++++.+|+.++
T Consensus 17 ~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~ 88 (259)
T COG0030 17 NVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKF 88 (259)
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcC
Confidence 346678888888888999999999999999999999999999999999999987754 346899999998765
No 212
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=5.3e-05 Score=79.76 Aligned_cols=72 Identities=17% Similarity=0.241 Sum_probs=64.0
Q ss_pred HHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEEccHHHHH
Q 003969 591 SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKN-CRFVCAKAEDVM 662 (783)
Q Consensus 591 ~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~n-v~f~~gDaed~l 662 (783)
..|...+++.+|.+|||.|.|+|.++..||... ++|+.+|+.++.++.|++|++..++.| +++..+|+.+..
T Consensus 84 ~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~ 159 (256)
T COG2519 84 GYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI 159 (256)
T ss_pred HHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc
Confidence 346777889999999999999999999999853 699999999999999999999999966 999999887643
No 213
>PLN02366 spermidine synthase
Probab=97.84 E-value=0.00019 Score=78.56 Aligned_cols=65 Identities=11% Similarity=0.083 Sum_probs=55.1
Q ss_pred CCCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHHc--CC--CcEEEEEccHHHHHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEIN--GI--KNCRFVCAKAEDVMGS 664 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~n--gl--~nv~f~~gDaed~l~~ 664 (783)
....+||+||||.|.+...++++ ..+|+.||+++.+++.|++..... ++ .+++++.+|+..++..
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~ 160 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKN 160 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhh
Confidence 34679999999999999999987 369999999999999999987542 23 4699999999998764
No 214
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=97.83 E-value=4.7e-05 Score=79.84 Aligned_cols=69 Identities=22% Similarity=0.297 Sum_probs=59.8
Q ss_pred HhhhccCCCCCeEEEecCCcCHHHHHHhhhC--------CEEEEEeCCHHHHHHHHHHHHHcCC-Cc--EEEEEccHHHH
Q 003969 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--------GMVIGIEMNASAVSDAHRNAEINGI-KN--CRFVCAKAEDV 661 (783)
Q Consensus 593 i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--------~~VigVE~s~~AIe~Ak~Na~~ngl-~n--v~f~~gDaed~ 661 (783)
...++.+..++++||++||||-+++-+.+++ .+|+.+|+++.|++.+++.++..++ .+ +.|+++||+++
T Consensus 92 ~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L 171 (296)
T KOG1540|consen 92 FVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL 171 (296)
T ss_pred hhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC
Confidence 3455677788999999999999999998774 5899999999999999999988777 33 89999999985
No 215
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=97.83 E-value=4.9e-05 Score=82.75 Aligned_cols=69 Identities=19% Similarity=0.160 Sum_probs=59.2
Q ss_pred HHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHH
Q 003969 591 SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAED 660 (783)
Q Consensus 591 ~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~~gDaed 660 (783)
..+.+.+...++.+|||+|||+|.+++.++++. .+|+++|. +.+++.|++|+...|+. +++++.+|+.+
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~ 210 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYK 210 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccC
Confidence 445555666677899999999999999999985 58999998 89999999999999984 69999999864
No 216
>PRK01581 speE spermidine synthase; Validated
Probab=97.83 E-value=0.0002 Score=79.60 Aligned_cols=64 Identities=11% Similarity=0.052 Sum_probs=51.6
Q ss_pred CCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHH-----HHcC--CCcEEEEEccHHHHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNA-----EING--IKNCRFVCAKAEDVMGS 664 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na-----~~ng--l~nv~f~~gDaed~l~~ 664 (783)
...+||+||||+|.....+.+.. .+|++||+++++++.|+..- .... -.+++++.+|+.+++..
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~ 222 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS 222 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh
Confidence 44699999999999888888764 79999999999999999621 1112 25799999999998753
No 217
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.82 E-value=5.2e-05 Score=87.54 Aligned_cols=65 Identities=28% Similarity=0.349 Sum_probs=53.9
Q ss_pred hhccCCCCCeEEEecCCcCHHHHHHhhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 595 DWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 595 ~~l~~~~g~~VLDLgCGtGti~l~LA~~-~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
+.+.+.++.+|||+|||+|.+++.|++. ..+|+|||+++.|++.|++|+...+ .+++|+++|+.+
T Consensus 260 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~ 325 (475)
T PLN02336 260 DKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTK 325 (475)
T ss_pred HhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCccc
Confidence 3334567789999999999999999986 4689999999999999999876322 369999999865
No 218
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.82 E-value=4.9e-05 Score=79.25 Aligned_cols=59 Identities=22% Similarity=0.281 Sum_probs=49.6
Q ss_pred CCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCC---------------CcEEEEEccHHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI---------------KNCRFVCAKAEDV 661 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl---------------~nv~f~~gDaed~ 661 (783)
.++.+|||+|||.|..++.||.++..|+|||+++.||+.|.. .+++ .+|+++++|+.++
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l 109 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFAL 109 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCC
Confidence 456799999999999999999999999999999999998743 2222 3588999998765
No 219
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.82 E-value=6e-05 Score=82.19 Aligned_cols=62 Identities=13% Similarity=0.180 Sum_probs=52.3
Q ss_pred CCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAEDVM 662 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gDaed~l 662 (783)
++.+|||||||+|..+..|++.. .+|+|||+|++|++.|++++....- -++.++++|+.+.+
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~ 128 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPL 128 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchh
Confidence 56789999999999999999873 6899999999999999999765321 25888999998754
No 220
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.81 E-value=0.00024 Score=76.22 Aligned_cols=64 Identities=5% Similarity=0.027 Sum_probs=53.1
Q ss_pred CCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHHcC----CCcEEEEEccHHHHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEING----IKNCRFVCAKAEDVMGS 664 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~ng----l~nv~f~~gDaed~l~~ 664 (783)
...+||+||||+|.++..+++. ..+|++||+++.+++.|+++....+ ..+++++.+|+.+++..
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~ 141 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD 141 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh
Confidence 3459999999999999988776 4689999999999999999875432 24689999999988764
No 221
>PRK05785 hypothetical protein; Provisional
Probab=97.81 E-value=6.2e-05 Score=78.80 Aligned_cols=52 Identities=13% Similarity=0.159 Sum_probs=44.3
Q ss_pred CCCeEEEecCCcCHHHHHHhhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~-~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
++.+|||||||||.++..|++. ..+|+|||++++|++.|+.. ..++++|+++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~--------~~~~~~d~~~ 103 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA--------DDKVVGSFEA 103 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc--------cceEEechhh
Confidence 3679999999999999999988 47999999999999999864 1357788765
No 222
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.80 E-value=1.1e-05 Score=55.88 Aligned_cols=27 Identities=44% Similarity=0.883 Sum_probs=24.4
Q ss_pred cccccccccccccccCCCCCCCccccCc
Q 003969 80 LHKTSLCSYFRKVGTCCHGSTCRYAHGE 107 (783)
Q Consensus 80 ~~kt~~c~~~~~~~~c~~g~~c~~ahg~ 107 (783)
.||+.+|++| ..|.|++|+.|+|+|+.
T Consensus 1 ~~k~~~C~~~-~~g~C~~g~~C~~~H~~ 27 (27)
T smart00356 1 KYKTELCKFF-KRGYCPYGDRCKFAHPL 27 (27)
T ss_pred CCCCCcCcCc-cCCCCCCCCCcCCCCcC
Confidence 3799999999 77999999999999973
No 223
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.78 E-value=8e-05 Score=76.11 Aligned_cols=79 Identities=20% Similarity=0.262 Sum_probs=64.5
Q ss_pred cEEEeCCCcccCHHHHHHHhhhc-cceeeEeec-cCC----ccEEEEEeCCHHHHHHHHHHHcCCccC---CceeEEEec
Q 003969 167 SKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK-KKG----MTVGFVKFESVEQLKNAVEELEGISIG---NKTLKVANV 237 (783)
Q Consensus 167 ~i~V~nLp~~~~~~~Lkklf~~~-~v~~~~i~~-~r~----~gfgFVtF~s~Eea~kAIe~LnG~~~~---Gr~L~V~~A 237 (783)
.+||-+||.++.-.+|-.||..+ |-...-++. .+. +.||||+|.+..+|..|+..|||..|+ |.+|++..|
T Consensus 36 TLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElA 115 (284)
T KOG1457|consen 36 TLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELA 115 (284)
T ss_pred eeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeeh
Confidence 49999999999999999999988 555555544 333 489999999999999999999999996 678998888
Q ss_pred CCCCcccc
Q 003969 238 VPRSFDKN 245 (783)
Q Consensus 238 ~pr~~~k~ 245 (783)
+.....|+
T Consensus 116 KSNtK~kr 123 (284)
T KOG1457|consen 116 KSNTKRKR 123 (284)
T ss_pred hcCccccc
Confidence 65544443
No 224
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.78 E-value=8.6e-05 Score=78.78 Aligned_cols=69 Identities=23% Similarity=0.295 Sum_probs=57.8
Q ss_pred HHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHH
Q 003969 591 SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAE 659 (783)
Q Consensus 591 ~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~~gDae 659 (783)
..|+.++++.+|.+||+.|.|+|.++++|++.. ++|+.+|+.++.++.|++|.+.+|+. |+++.+.|+.
T Consensus 30 ~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~ 102 (247)
T PF08704_consen 30 SYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVC 102 (247)
T ss_dssp HHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GG
T ss_pred HHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEeccee
Confidence 457778899999999999999999999999874 69999999999999999999999994 7999999985
No 225
>PRK04148 hypothetical protein; Provisional
Probab=97.77 E-value=6.6e-05 Score=72.34 Aligned_cols=69 Identities=16% Similarity=0.087 Sum_probs=54.9
Q ss_pred HHHHHhhhccCCCCCeEEEecCCcCH-HHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHH
Q 003969 589 LYSLGGDWADLGPDTLLFDVCCGTGT-IGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664 (783)
Q Consensus 589 L~~~i~~~l~~~~g~~VLDLgCGtGt-i~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~~ 664 (783)
+..++.+.+....+.++||+|||+|. ++..|++.+..|+|+|+++.+++.|+.+ + +.++++|+.+--..
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~----~---~~~v~dDlf~p~~~ 73 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL----G---LNAFVDDLFNPNLE 73 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh----C---CeEEECcCCCCCHH
Confidence 44555555555556889999999996 9999999999999999999999988776 2 57888998764333
No 226
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.77 E-value=0.00011 Score=66.95 Aligned_cols=63 Identities=19% Similarity=0.271 Sum_probs=53.1
Q ss_pred cEEEeCCCcccCHHHHHHHhhhc---cceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCC
Q 003969 167 SKCLVHLPRKWHSDNLKKFLADH---GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGN 229 (783)
Q Consensus 167 ~i~V~nLp~~~~~~~Lkklf~~~---~v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~G 229 (783)
.|=|+|||..++.+.|.+++.+. ...+..+.. +.+.|||||+|.+++.+.+..+.++|..|..
T Consensus 3 TvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~ 72 (97)
T PF04059_consen 3 TVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPN 72 (97)
T ss_pred eEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCcccc
Confidence 36799999999999999999966 244444444 4568999999999999999999999999974
No 227
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.77 E-value=7.4e-05 Score=76.60 Aligned_cols=64 Identities=36% Similarity=0.618 Sum_probs=56.5
Q ss_pred CeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHH
Q 003969 603 TLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666 (783)
Q Consensus 603 ~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~~l~ 666 (783)
..+||||||.|.+.+.+|... ..++|||+....+..|...+...++.|+.++++|+..++..+.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~ 84 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLF 84 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHS
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcc
Confidence 389999999999999999884 6899999999999999999999999999999999999887664
No 228
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=97.75 E-value=2.8e-05 Score=82.03 Aligned_cols=74 Identities=15% Similarity=0.236 Sum_probs=65.0
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 003969 163 DVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr 240 (783)
+..-+++||||....+.++|+..|+++| |...+|. ++|+||.|+-.|++..||+.|||.+|.|+.|.|.....|
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv----kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV----KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeee----cceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 3466899999999999999999999997 6666654 479999999999999999999999999999998766433
No 229
>PTZ00146 fibrillarin; Provisional
Probab=97.75 E-value=0.00011 Score=79.56 Aligned_cols=64 Identities=17% Similarity=0.160 Sum_probs=52.2
Q ss_pred hhccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 595 ~~l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
+.+.+.++.+|||||||+|++++.||..+ ..|++||+++.+.+++..-++. ..||.++.+|+..
T Consensus 126 ~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~--r~NI~~I~~Da~~ 192 (293)
T PTZ00146 126 ANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK--RPNIVPIIEDARY 192 (293)
T ss_pred ceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh--cCCCEEEECCccC
Confidence 33467788999999999999999999986 6899999999877666655442 2578999999864
No 230
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=97.75 E-value=5e-05 Score=72.12 Aligned_cols=75 Identities=13% Similarity=0.175 Sum_probs=65.3
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 003969 164 VELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 164 ~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
.+.-|+|.++-...+++++...|..|| |....+.. |-.+||+.|.+++.++|++||+.|||.++.|.+|.|-.+-
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 366799999999999999999999995 65555544 3457999999999999999999999999999999997664
No 231
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.75 E-value=5.9e-05 Score=77.45 Aligned_cols=65 Identities=20% Similarity=0.280 Sum_probs=54.2
Q ss_pred hhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHH
Q 003969 594 GDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMG 663 (783)
Q Consensus 594 ~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~ 663 (783)
+..+.+..-.+|.|||||+|..+-.|+++. ..|+|||.|++|++.|+.. +.|++|..+|+.++-+
T Consensus 23 la~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r-----lp~~~f~~aDl~~w~p 89 (257)
T COG4106 23 LARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR-----LPDATFEEADLRTWKP 89 (257)
T ss_pred HhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh-----CCCCceecccHhhcCC
Confidence 344555566799999999999999999984 7999999999999999653 4689999999977543
No 232
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=97.73 E-value=2.9e-05 Score=67.91 Aligned_cols=53 Identities=30% Similarity=0.539 Sum_probs=44.7
Q ss_pred EEecCCcCHHHHHHhhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 606 FDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 606 LDLgCGtGti~l~LA~~-~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
||+|||+|..+..|++. ..+|+|+|+++.+++.|+++.... ++.++++|++++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l 54 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDL 54 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSS
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc---CchheeehHHhC
Confidence 89999999999999999 899999999999999999886543 456999998765
No 233
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.73 E-value=5.8e-05 Score=82.58 Aligned_cols=62 Identities=29% Similarity=0.413 Sum_probs=56.7
Q ss_pred CCCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEEccHHHH
Q 003969 599 LGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIKN-CRFVCAKAEDV 661 (783)
Q Consensus 599 ~~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~ngl~n-v~f~~gDaed~ 661 (783)
+..+..|||+|||||.+++..|+.+ ++|+|||.+.-| +.|++.+..|++.+ |+++.|.++++
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi 121 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI 121 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEE
Confidence 4578999999999999999999985 799999998876 99999999999987 99999999986
No 234
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.71 E-value=2.3e-05 Score=85.31 Aligned_cols=80 Identities=11% Similarity=0.200 Sum_probs=68.2
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhc-cceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 003969 164 VELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 164 ~~~~i~V~nLp~~~~~~~Lkklf~~~-~v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
..-+++|++|+|.++++.|+.-|.++ .|..+.+++ +|++||+||+|++++.-.+++.. .-..++||+|.+..|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 45579999999999999999999999 477788777 78999999999999988877655 3455899999999999
Q ss_pred CCCccc
Q 003969 239 PRSFDK 244 (783)
Q Consensus 239 pr~~~k 244 (783)
||.++.
T Consensus 84 ~r~~~~ 89 (311)
T KOG4205|consen 84 SREDQT 89 (311)
T ss_pred Cccccc
Confidence 886653
No 235
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.71 E-value=2.8e-05 Score=84.67 Aligned_cols=78 Identities=15% Similarity=0.261 Sum_probs=65.3
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~p 239 (783)
..+|+|++||..+++.+||..|++++ |..+.++. .+.+|||||+|.+++..+++.. ..-+++.|+.+.|..|.|
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccc
Confidence 44899999999999999999999998 44444444 5789999999998888877654 478889999999999999
Q ss_pred CCcc
Q 003969 240 RSFD 243 (783)
Q Consensus 240 r~~~ 243 (783)
|...
T Consensus 176 k~~~ 179 (311)
T KOG4205|consen 176 KEVM 179 (311)
T ss_pred hhhc
Confidence 8643
No 236
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.69 E-value=0.0001 Score=79.10 Aligned_cols=68 Identities=22% Similarity=0.375 Sum_probs=51.5
Q ss_pred HHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC-----CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-----GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 587 e~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~-----~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
+.+...+.+.+. ....+|||+|||+|.++..|++.. ..|+|+|+++.|++.|+++ ..++.|+.+|+.+
T Consensus 72 ~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~-----~~~~~~~~~d~~~ 144 (272)
T PRK11088 72 DAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR-----YPQVTFCVASSHR 144 (272)
T ss_pred HHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----CCCCeEEEeeccc
Confidence 334444444433 345689999999999999998763 2689999999999999765 2468899998776
No 237
>PRK06202 hypothetical protein; Provisional
Probab=97.68 E-value=6.6e-05 Score=78.37 Aligned_cols=58 Identities=26% Similarity=0.360 Sum_probs=45.7
Q ss_pred CCCCeEEEecCCcCHHHHHHhhhC------CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHRV------GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~~------~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
.++.+|||||||+|.++..|++.. .+|+|||+++.|++.|+.+...+ ++.+.++++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~~ 122 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP---GVTFRQAVSDE 122 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC---CCeEEEEeccc
Confidence 456799999999999999988632 38999999999999999876543 35566665544
No 238
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=97.68 E-value=0.00013 Score=80.75 Aligned_cols=72 Identities=25% Similarity=0.357 Sum_probs=56.0
Q ss_pred HHHHHHHhhhccC-CCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 587 EKLYSLGGDWADL-GPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 587 e~L~~~i~~~l~~-~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
+.+...+++.+.+ .++.+|||||||+|.+++.+++.. .+|+++|+++.+++.|++++. ..+++++.+|+++.
T Consensus 98 e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~l 172 (340)
T PLN02490 98 EDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDL 172 (340)
T ss_pred HHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhC
Confidence 3344444444433 356799999999999999998864 689999999999999999864 34678999998763
No 239
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.65 E-value=0.00014 Score=76.70 Aligned_cols=78 Identities=15% Similarity=0.309 Sum_probs=66.4
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
+....+|+|.|||+.+.++||++||++++ +.-+.+-. +++.|-|=|+|...++|..||+.+||..++|+.+++...
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 45568999999999999999999999995 33333333 678899999999999999999999999999999988766
Q ss_pred CC
Q 003969 238 VP 239 (783)
Q Consensus 238 ~p 239 (783)
.+
T Consensus 160 ~~ 161 (243)
T KOG0533|consen 160 SS 161 (243)
T ss_pred cC
Confidence 43
No 240
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=97.65 E-value=0.00012 Score=75.79 Aligned_cols=57 Identities=18% Similarity=0.269 Sum_probs=51.1
Q ss_pred eEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHH
Q 003969 604 LLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAED 660 (783)
Q Consensus 604 ~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gDaed 660 (783)
+|||+|||+|.++..+++.. .+|+|+|+++.+++.|+.++...|+ .+++|+.+|+.+
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~ 61 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAK 61 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEeccccc
Confidence 69999999999999999875 5899999999999999999988888 469999998754
No 241
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.65 E-value=0.00011 Score=70.44 Aligned_cols=57 Identities=25% Similarity=0.306 Sum_probs=51.6
Q ss_pred eEEEecCCcCHHHHHHhhhCC--EEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 604 LLFDVCCGTGTIGLTLAHRVG--MVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 604 ~VLDLgCGtGti~l~LA~~~~--~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
++||+|||+|.+++.+++.+. +|+++|.++.+++.+++|++.|++.++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999998863 799999999999999999999999889998877654
No 242
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=97.65 E-value=9e-05 Score=77.34 Aligned_cols=74 Identities=19% Similarity=0.272 Sum_probs=64.5
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCc-cCC--ceeEEEec
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGIS-IGN--KTLKVANV 237 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~-~~G--r~L~V~~A 237 (783)
.-|++||.|.+.-+++|++.+|..+| +..+.+.. +.+||++||.|.+.-||+.||..|+|.. +-| ..|.|+.|
T Consensus 19 drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~A 98 (371)
T KOG0146|consen 19 DRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFA 98 (371)
T ss_pred chhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEec
Confidence 35799999999999999999999996 77777777 5789999999999999999999999976 455 46888877
Q ss_pred C
Q 003969 238 V 238 (783)
Q Consensus 238 ~ 238 (783)
.
T Consensus 99 D 99 (371)
T KOG0146|consen 99 D 99 (371)
T ss_pred c
Confidence 3
No 243
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.64 E-value=9.5e-05 Score=80.54 Aligned_cols=75 Identities=19% Similarity=0.252 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh---------CCEEEEEeCCHHHHHHHHHHHHHcCCC--
Q 003969 581 VNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---------VGMVIGIEMNASAVSDAHRNAEINGIK-- 649 (783)
Q Consensus 581 vN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~---------~~~VigVE~s~~AIe~Ak~Na~~ngl~-- 649 (783)
++...+..|. +++...++.+|+|.+||+|.|.+++.+. ...++|+|+++.++..|+.|+..+++.
T Consensus 30 TP~~i~~l~~----~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~ 105 (311)
T PF02384_consen 30 TPREIVDLMV----KLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNS 105 (311)
T ss_dssp --HHHHHHHH----HHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCB
T ss_pred hHHHHHHHHH----hhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccc
Confidence 4455555444 4446667789999999999999988763 358999999999999999999888763
Q ss_pred cEEEEEccHH
Q 003969 650 NCRFVCAKAE 659 (783)
Q Consensus 650 nv~f~~gDae 659 (783)
+..+.++|..
T Consensus 106 ~~~i~~~d~l 115 (311)
T PF02384_consen 106 NINIIQGDSL 115 (311)
T ss_dssp GCEEEES-TT
T ss_pred cccccccccc
Confidence 3467788754
No 244
>PRK06922 hypothetical protein; Provisional
Probab=97.64 E-value=0.00015 Score=85.69 Aligned_cols=61 Identities=13% Similarity=0.248 Sum_probs=52.9
Q ss_pred CCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
.++.+|||+|||+|.++..|++.. .+|+|+|+++.|++.|++++...+. ++.++++|+.++
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~-~ie~I~gDa~dL 479 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDAINL 479 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-CeEEEEcchHhC
Confidence 357899999999999999998764 6999999999999999998776554 689999998873
No 245
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.63 E-value=9.6e-05 Score=81.54 Aligned_cols=73 Identities=19% Similarity=0.270 Sum_probs=65.1
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc-cceeeEeec-cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK-KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~-~v~~~~i~~-~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
..+...|+|+|||+.++-+-||+-|.++ .|.++.|+- ++++| .|-|.++|+|+.|+..|||..+.||.|+|..
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 4556779999999999999999999999 488888854 66666 8999999999999999999999999999863
No 246
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.61 E-value=0.00015 Score=82.11 Aligned_cols=74 Identities=14% Similarity=0.255 Sum_probs=66.2
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec-cCC---ccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK-KKG---MTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~-~r~---~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
+-++.|.+|+..+...+||.||++|| |.-++|.+ -|+ +-||||||.+.++|.++|+-|+-.++-||.|.|..|+
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 45799999999999999999999995 77788877 343 5799999999999999999999999999999998775
No 247
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.60 E-value=0.0016 Score=69.20 Aligned_cols=84 Identities=14% Similarity=0.137 Sum_probs=69.2
Q ss_pred ccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEE
Q 003969 579 FQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGI-KNCRFV 654 (783)
Q Consensus 579 fQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~ 654 (783)
.++.+.....|+..+ ... +..+||+||+++|.-++.+|... ++|+.+|.+++.++.|++|.+..|+ .+|+++
T Consensus 61 ~~~~~~~g~lL~~l~-~~~---~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~ 136 (247)
T PLN02589 61 MTTSADEGQFLNMLL-KLI---NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFR 136 (247)
T ss_pred CccCHHHHHHHHHHH-HHh---CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEE
Confidence 455566666655444 333 34689999999999999999763 6999999999999999999999998 569999
Q ss_pred EccHHHHHHHHH
Q 003969 655 CAKAEDVMGSLL 666 (783)
Q Consensus 655 ~gDaed~l~~l~ 666 (783)
.|++.+.|+.+.
T Consensus 137 ~G~a~e~L~~l~ 148 (247)
T PLN02589 137 EGPALPVLDQMI 148 (247)
T ss_pred eccHHHHHHHHH
Confidence 999999998875
No 248
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=97.58 E-value=0.00023 Score=72.82 Aligned_cols=67 Identities=25% Similarity=0.402 Sum_probs=55.2
Q ss_pred HhhhccCCCCCeEEEecCCcCHHHHHHhhhCC---EEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG---MVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 593 i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~---~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
++..+...++.+|||+|||+|.++..+++... +++|+|+++.+++.++++.. ...++.++.+|+.+.
T Consensus 31 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~ 100 (223)
T TIGR01934 31 AVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEAL 100 (223)
T ss_pred HHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcC
Confidence 44444445778999999999999999998753 89999999999999998875 335789999998764
No 249
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.57 E-value=6.3e-05 Score=87.43 Aligned_cols=74 Identities=19% Similarity=0.245 Sum_probs=66.3
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeecc----CCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKK----KGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~----r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
..+|.|+|||+..+-.+++++|..|| +..+++.++ -++|||||+|-++.+|..|++.|.+.-+=||.|....|.
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhc
Confidence 56999999999999999999999995 888888773 357999999999999999999999999999999876663
No 250
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.57 E-value=8.2e-05 Score=77.40 Aligned_cols=72 Identities=18% Similarity=0.281 Sum_probs=62.5
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhc-cceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEE
Q 003969 164 VELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235 (783)
Q Consensus 164 ~~~~i~V~nLp~~~~~~~Lkklf~~~-~v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~ 235 (783)
..++|+-|-|...++++-|.+.|.+| ...-.++++ ++++|||||.|++.+++..|+..|||.-++.|.|+.+
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 36899999999999999999999998 344444444 7899999999999999999999999999999988654
No 251
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.55 E-value=0.00025 Score=83.16 Aligned_cols=67 Identities=13% Similarity=0.125 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHHhhhccC---CCCCeEEEecCCcCHHHHHHhhhC----------CEEEEEeCCHHHHHHHHHHHHHcC
Q 003969 581 VNTLAAEKLYSLGGDWADL---GPDTLLFDVCCGTGTIGLTLAHRV----------GMVIGIEMNASAVSDAHRNAEING 647 (783)
Q Consensus 581 vN~~~ae~L~~~i~~~l~~---~~g~~VLDLgCGtGti~l~LA~~~----------~~VigVE~s~~AIe~Ak~Na~~ng 647 (783)
++...++.|.+.+...... ....+|||.|||+|.|.+.++... ..++|+|+++.++..|+.|+...+
T Consensus 8 TP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~ 87 (524)
T TIGR02987 8 TPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA 87 (524)
T ss_pred CcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC
Confidence 6778888888877654321 134689999999999999888653 368999999999999999987665
No 252
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.54 E-value=0.00014 Score=76.30 Aligned_cols=60 Identities=15% Similarity=0.209 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh-CCEEEEEeCCHHHHHH-HHHHH
Q 003969 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSD-AHRNA 643 (783)
Q Consensus 584 ~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~-~~~VigVE~s~~AIe~-Ak~Na 643 (783)
..+..|...+-.+-....+.+|||+|||+|.|+.+|++. +++|+|||+++.++.. .+.|.
T Consensus 58 r~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~ 119 (228)
T TIGR00478 58 RGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDE 119 (228)
T ss_pred hhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCC
Confidence 344555544443322346789999999999999999998 5799999999977765 44443
No 253
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=97.51 E-value=0.00032 Score=72.26 Aligned_cols=57 Identities=26% Similarity=0.564 Sum_probs=48.3
Q ss_pred CCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
...+|||+|||+|.++..|++.. .+|+|+|+++.++..++.++. .++.++.+|+++.
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~ 92 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKL 92 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhC
Confidence 34689999999999999999875 468999999999999987653 3688999998764
No 254
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.50 E-value=0.00035 Score=70.17 Aligned_cols=76 Identities=22% Similarity=0.191 Sum_probs=52.0
Q ss_pred HHHHHHHHHhhh------ccCCCCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHHcC--C-CcEEE
Q 003969 585 AAEKLYSLGGDW------ADLGPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEING--I-KNCRF 653 (783)
Q Consensus 585 ~ae~L~~~i~~~------l~~~~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~ng--l-~nv~f 653 (783)
.+..|..++... .....+.+||+||||+|..|+.+++. ..+|+..|..+ ++..++.|++.|+ . .++.+
T Consensus 23 aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v 101 (173)
T PF10294_consen 23 AALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSV 101 (173)
T ss_dssp HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EE
T ss_pred hHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccC
Confidence 444555555552 34556889999999999999999998 68999999999 9999999999998 3 56888
Q ss_pred EEccHHHH
Q 003969 654 VCAKAEDV 661 (783)
Q Consensus 654 ~~gDaed~ 661 (783)
...|+.+.
T Consensus 102 ~~L~Wg~~ 109 (173)
T PF10294_consen 102 RPLDWGDE 109 (173)
T ss_dssp EE--TTS-
T ss_pred cEEEecCc
Confidence 88887553
No 255
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=97.49 E-value=4.2e-05 Score=84.30 Aligned_cols=41 Identities=49% Similarity=0.805 Sum_probs=36.4
Q ss_pred CCCCCCcccccccccccccccCCC-CCCCccccCcCccCCCC
Q 003969 74 SPSLHPLHKTSLCSYFRKVGTCCH-GSTCRYAHGEEELRIRP 114 (783)
Q Consensus 74 ~~~~~~~~kt~~c~~~~~~~~c~~-g~~c~~ahg~~elr~~~ 114 (783)
.......|||.+|.+|++.|+|.| |++|+||||.+|||...
T Consensus 123 ~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~ 164 (332)
T KOG1677|consen 123 GERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPS 164 (332)
T ss_pred cccCcccccCCcceeeecCccccccCchhhhcCCcccccccc
Confidence 344567899999999999999999 99999999999999643
No 256
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.46 E-value=0.0017 Score=67.67 Aligned_cols=64 Identities=19% Similarity=0.262 Sum_probs=58.0
Q ss_pred CCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEE-ccHHHHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKN-CRFVC-AKAEDVMGS 664 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~n-v~f~~-gDaed~l~~ 664 (783)
+.++||++|.++|.-++.+|... .+++.||.+++.++.|++|.+..|+.+ +.++. ||+.+.+..
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~ 127 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSR 127 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHh
Confidence 56899999999999999999874 589999999999999999999999966 88888 699988876
No 257
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.00063 Score=68.32 Aligned_cols=82 Identities=12% Similarity=0.264 Sum_probs=69.3
Q ss_pred CCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHHhhhcCCCccccc
Q 003969 602 DTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDE 678 (783)
Q Consensus 602 g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~~l~~~~~d~p~~~~~ 678 (783)
...+++||||+|.++-.|++.. ....++|+++.|.+..++.|+.|++ ++..++.|+.+.+.. +
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-~~~~V~tdl~~~l~~---~---------- 109 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-HIDVVRTDLLSGLRN---E---------- 109 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-ccceeehhHHhhhcc---C----------
Confidence 4689999999999999999874 4689999999999999999999998 488999998877654 2
Q ss_pred ccccCCchhhhhhhhccCCCCCCCC
Q 003969 679 HASEGSNKEITIAEEKDSSRDNVPE 703 (783)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (783)
.-|+.+-|++|++++..|.
T Consensus 110 ------~VDvLvfNPPYVpt~~~~i 128 (209)
T KOG3191|consen 110 ------SVDVLVFNPPYVPTSDEEI 128 (209)
T ss_pred ------CccEEEECCCcCcCCcccc
Confidence 1266788999999998764
No 258
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.44 E-value=9.9e-05 Score=76.24 Aligned_cols=71 Identities=23% Similarity=0.375 Sum_probs=59.7
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhccceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 003969 166 LSKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (783)
Q Consensus 166 ~~i~V~nLp~~~~~~~Lkklf~~~~v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~p 239 (783)
.++|||+||+...+++|..||.+++-.....++ .|||||.|.+.-+|+.||-.|||.++.|.++.|..|..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk---~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK---NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee---cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 479999999999999999999999633222222 38999999999999999999999999998877766654
No 259
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.41 E-value=0.00034 Score=71.13 Aligned_cols=55 Identities=18% Similarity=0.332 Sum_probs=45.2
Q ss_pred CCCeEEEecCCcCHHHHHHhhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~-~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l 662 (783)
++.+|||+|||+|.++..++.. ...++|||+++++++.|+.+ +++++++|+.+.+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-------~~~~~~~d~~~~l 68 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-------GVNVIQGDLDEGL 68 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-------CCeEEEEEhhhcc
Confidence 5679999999999999999865 35789999999999988642 4678888887643
No 260
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.40 E-value=0.00046 Score=72.41 Aligned_cols=65 Identities=25% Similarity=0.502 Sum_probs=60.5
Q ss_pred CeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHHh
Q 003969 603 TLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLK 667 (783)
Q Consensus 603 ~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~~l~~ 667 (783)
..+||||||.|.+.+.+|+.. .-++|||+....+..|..-+...++.|+.++++||..++..+..
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~ 116 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIP 116 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCC
Confidence 489999999999999999985 57999999999999999999999999999999999999987754
No 261
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.39 E-value=0.00032 Score=74.95 Aligned_cols=72 Identities=15% Similarity=0.154 Sum_probs=59.4
Q ss_pred HHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 588 ~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
.+.+.+++.+.+.++..|||+|+|.|.+|..|++.+++|++||+++..++..+.... .-.|++++.+|+.++
T Consensus 17 ~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~ 88 (262)
T PF00398_consen 17 NIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKW 88 (262)
T ss_dssp HHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTS
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhh--hcccceeeecchhcc
Confidence 344555566666688999999999999999999999999999999999999987644 346899999998763
No 262
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.34 E-value=0.00025 Score=73.03 Aligned_cols=53 Identities=23% Similarity=0.378 Sum_probs=44.6
Q ss_pred HHHHHhhhccCCC--CCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHH
Q 003969 589 LYSLGGDWADLGP--DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHR 641 (783)
Q Consensus 589 L~~~i~~~l~~~~--g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~ 641 (783)
+...+++++.+.. ...|||||||+|..+-.|...+..++|||+|+.|++.|.+
T Consensus 36 m~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~ 90 (270)
T KOG1541|consen 36 MAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVE 90 (270)
T ss_pred HHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHH
Confidence 3344555555544 6789999999999999999999999999999999999996
No 263
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.32 E-value=0.00036 Score=78.93 Aligned_cols=78 Identities=26% Similarity=0.377 Sum_probs=64.0
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~p 239 (783)
...|||+|||.+++..+|+.+|..|| |....|.. +++..||||+|.+.+.++.||++= =..++|++|.|.+-++
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEeccc
Confidence 44599999999999999999999995 55544444 233389999999999999999995 7778999999998777
Q ss_pred CCcc
Q 003969 240 RSFD 243 (783)
Q Consensus 240 r~~~ 243 (783)
....
T Consensus 367 ~~~g 370 (419)
T KOG0116|consen 367 GFRG 370 (419)
T ss_pred cccc
Confidence 6544
No 264
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.31 E-value=0.00087 Score=64.95 Aligned_cols=61 Identities=30% Similarity=0.401 Sum_probs=51.2
Q ss_pred CCCCeEEEecCCcCHHHHHHhh-----h-CCEEEEEeCCHHHHHHHHHHHHHcC--C-CcEEEEEccHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAH-----R-VGMVIGIEMNASAVSDAHRNAEING--I-KNCRFVCAKAED 660 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~-----~-~~~VigVE~s~~AIe~Ak~Na~~ng--l-~nv~f~~gDaed 660 (783)
.+...|+|+|||-|.++..|+. . .-+|+|||.++..++.|...++..+ + .++.+..++..+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 93 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIAD 93 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhh
Confidence 5667999999999999999998 3 4699999999999999999988877 4 457776666554
No 265
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.29 E-value=2.1e-05 Score=70.65 Aligned_cols=56 Identities=21% Similarity=0.309 Sum_probs=41.8
Q ss_pred EEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 606 FDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 606 LDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
||+|||+|.++..+... ..+++|+|+|+.|++.|++.....+..+...+..+..+.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 58 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDL 58 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCCh
Confidence 79999999999999988 579999999999999999998887766656665554443
No 266
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.27 E-value=0.00063 Score=65.67 Aligned_cols=40 Identities=30% Similarity=0.544 Sum_probs=36.9
Q ss_pred CCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHH
Q 003969 599 LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSD 638 (783)
Q Consensus 599 ~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~ 638 (783)
..++.+|||+|||+|.++..|++.+.+|+|+|+++.+++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK 59 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh
Confidence 4567899999999999999999888899999999999987
No 267
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=97.24 E-value=0.00021 Score=76.53 Aligned_cols=101 Identities=20% Similarity=0.227 Sum_probs=70.2
Q ss_pred cccccccceEEee-CCeEEEECCC--ccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHH-HHhhh-CCEEEE
Q 003969 554 SNDVVEARIHDSI-SNLRFCISPT--AFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGL-TLAHR-VGMVIG 628 (783)
Q Consensus 554 ~~l~G~~~I~E~i-~gl~f~isp~--sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l-~LA~~-~~~Vig 628 (783)
..|+|+.-..+.+ +|++|.++|. .|-..|...-.+ ++.+.- .+..|+|||+|.|.|++ .|.+. ++.|++
T Consensus 150 ~~L~Gd~gWV~~v~NGI~~~~d~t~~MFS~GN~~EK~R----v~~~sc--~~eviVDLYAGIGYFTlpflV~agAk~V~A 223 (351)
T KOG1227|consen 150 QPLYGDLGWVKHVQNGITQIWDPTKTMFSRGNIKEKKR----VLNTSC--DGEVIVDLYAGIGYFTLPFLVTAGAKTVFA 223 (351)
T ss_pred ccccccccceeehhcCeEEEechhhhhhhcCcHHHHHH----hhhccc--ccchhhhhhcccceEEeehhhccCccEEEE
Confidence 3456665444433 5888888874 564555533333 333322 35789999999999999 44444 479999
Q ss_pred EeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHH
Q 003969 629 IEMNASAVSDAHRNAEINGIK-NCRFVCAKAED 660 (783)
Q Consensus 629 VE~s~~AIe~Ak~Na~~ngl~-nv~f~~gDaed 660 (783)
+|.+|.+|+..++|++.|++. .+..+.||-..
T Consensus 224 ~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~ 256 (351)
T KOG1227|consen 224 CEWNPWSVEALRRNAEANNVMDRCRITEGDNRN 256 (351)
T ss_pred EecCHHHHHHHHHHHHhcchHHHHHhhhccccc
Confidence 999999999999999999873 35555555443
No 268
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.23 E-value=0.00092 Score=76.85 Aligned_cols=60 Identities=22% Similarity=0.357 Sum_probs=49.6
Q ss_pred CCeEEEecCCcCHHHHHHhhhC------CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHHH
Q 003969 602 DTLLFDVCCGTGTIGLTLAHRV------GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAEDV 661 (783)
Q Consensus 602 g~~VLDLgCGtGti~l~LA~~~------~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gDaed~ 661 (783)
+..|||+|||+|.++...++.+ .+|++||.++.|+..+++.++.|+. +.|+++.+|++++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v 253 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREV 253 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTS
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCC
Confidence 5789999999999998776553 6999999999999888887788898 5699999999985
No 269
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=97.23 E-value=0.0006 Score=80.07 Aligned_cols=71 Identities=18% Similarity=0.307 Sum_probs=63.5
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 003969 166 LSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 166 ~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
-.|+||+||+.+++.+|+.+|++|| |.+.. ....+|+|||+|-.-.+|.+|+.+|+.+.+.++.|++..|.
T Consensus 422 rTLwvG~i~k~v~e~dL~~~feefGeiqSi~--li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 422 RTLWVGGIPKNVTEQDLANLFEEFGEIQSII--LIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeccccchhhHHHHHHHHHhcccceeEe--eccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 3589999999999999999999996 65443 45678999999999999999999999999999999998884
No 270
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.23 E-value=0.0007 Score=72.59 Aligned_cols=71 Identities=18% Similarity=0.276 Sum_probs=48.2
Q ss_pred EECCCccccCCHHHHHHHHHHHhhh----ccCCCCCeEEEecCCcCH----HHHHHhhhC-------CEEEEEeCCHHHH
Q 003969 572 CISPTAFFQVNTLAAEKLYSLGGDW----ADLGPDTLLFDVCCGTGT----IGLTLAHRV-------GMVIGIEMNASAV 636 (783)
Q Consensus 572 ~isp~sFfQvN~~~ae~L~~~i~~~----l~~~~g~~VLDLgCGtGt----i~l~LA~~~-------~~VigVE~s~~AI 636 (783)
.+..+.||.- +.+.+.|...++.. .....+.+|||+|||+|- +++.|++.. .+|+|+|+++.|+
T Consensus 67 ti~~T~FfR~-~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L 145 (264)
T smart00138 67 TTNETRFFRE-SKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKAL 145 (264)
T ss_pred hcCCCcccCC-cHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHH
Confidence 3455666653 33455555554432 222345799999999995 666666542 4899999999999
Q ss_pred HHHHHHH
Q 003969 637 SDAHRNA 643 (783)
Q Consensus 637 e~Ak~Na 643 (783)
+.|++.+
T Consensus 146 ~~Ar~~~ 152 (264)
T smart00138 146 EKARAGI 152 (264)
T ss_pred HHHHcCC
Confidence 9999863
No 271
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.23 E-value=0.00023 Score=73.76 Aligned_cols=43 Identities=28% Similarity=0.598 Sum_probs=39.0
Q ss_pred CCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRN 642 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~N 642 (783)
.+-.++||||||||.+|..|...+.+++|||+|..|++.|.+.
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eK 166 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEK 166 (287)
T ss_pred CccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhc
Confidence 3357999999999999999999999999999999999998763
No 272
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=97.22 E-value=0.0005 Score=74.48 Aligned_cols=73 Identities=14% Similarity=0.319 Sum_probs=66.2
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 003969 166 LSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 166 ~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
.+|||-.+-.+.+++|+|..|+.|| |.++.+-. +..+||||++|.+....+.||..||=++++|.-|+|..+-
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 4899999999999999999999995 77777666 4578999999999999999999999999999999998663
No 273
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.18 E-value=0.00091 Score=75.36 Aligned_cols=77 Identities=18% Similarity=0.286 Sum_probs=66.0
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhccceeeEeec--cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 003969 163 DVELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKK--KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~~~~~Lkklf~~~~v~~~~i~~--~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr 240 (783)
...+-|.+++|||..++++|.+||+.++|....+.. +|..|=|||+|.++|+.++|+++ |=..+..|=|.|-.+.+.
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCGIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAGGA 86 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCceeEEEEeccCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccCCc
Confidence 446679999999999999999999999887755554 67889999999999999999986 666677888999888665
No 274
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.15 E-value=0.0009 Score=70.22 Aligned_cols=62 Identities=18% Similarity=0.173 Sum_probs=51.2
Q ss_pred CCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHH------------HcCCCcEEEEEccHHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAE------------INGIKNCRFVCAKAEDV 661 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~------------~ngl~nv~f~~gDaed~ 661 (783)
.++.+||+.+||.|.-.+.||.++..|+|||+++.||+.+.+... ...-.+++++++|+.++
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l 115 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNL 115 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCC
Confidence 456799999999999999999999999999999999999866210 01113699999999875
No 275
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.11 E-value=0.00084 Score=78.16 Aligned_cols=76 Identities=17% Similarity=0.197 Sum_probs=66.7
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec-------cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK-------KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~-------~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
.-++||+||+..++++.|-.-|..|| |..++|+- .+.+.+|||.|-+-.++++|++.|+|..+.+..++...
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gW 253 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGW 253 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeecc
Confidence 34799999999999999999999996 67777765 46679999999999999999999999999999999876
Q ss_pred cCCC
Q 003969 237 VVPR 240 (783)
Q Consensus 237 A~pr 240 (783)
+++-
T Consensus 254 gk~V 257 (877)
T KOG0151|consen 254 GKAV 257 (877)
T ss_pred cccc
Confidence 6444
No 276
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=97.10 E-value=0.00056 Score=76.28 Aligned_cols=95 Identities=18% Similarity=0.251 Sum_probs=74.9
Q ss_pred eeCCeEEEECCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHH
Q 003969 565 SISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAE 644 (783)
Q Consensus 565 ~i~gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~ 644 (783)
+-+|.+|.+.-+.-|...+...+. ..+..+ ..+|..|-|+|||.|-|++++++...+|++-|+++++|++.+.|+.
T Consensus 217 re~~~~Fk~DfskVYWnsRL~~Eh--erlsg~--fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~ 292 (495)
T KOG2078|consen 217 REGGERFKFDFSKVYWNSRLSHEH--ERLSGL--FKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIK 292 (495)
T ss_pred ecCCeeEEEecceEEeeccchhHH--HHHhhc--cCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhcc
Confidence 346788888766555444333222 112222 3467899999999999999999999999999999999999999999
Q ss_pred HcCCC--cEEEEEccHHHHHH
Q 003969 645 INGIK--NCRFVCAKAEDVMG 663 (783)
Q Consensus 645 ~ngl~--nv~f~~gDaed~l~ 663 (783)
.|.+. +++.+..|+.+++.
T Consensus 293 lNkv~~~~iei~Nmda~~Flr 313 (495)
T KOG2078|consen 293 LNKVDPSAIEIFNMDAKDFLR 313 (495)
T ss_pred ccccchhheeeecccHHHHhh
Confidence 99994 59999999999985
No 277
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.10 E-value=0.001 Score=71.99 Aligned_cols=68 Identities=19% Similarity=0.201 Sum_probs=57.0
Q ss_pred HhhhccCCCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHHH
Q 003969 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAEDV 661 (783)
Q Consensus 593 i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gDaed~ 661 (783)
+++......+..|||+|||+|.+++..+..+ ++|++||.+ +|.+.|++-.+.|++ ++|.++.|+++++
T Consensus 169 il~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdi 238 (517)
T KOG1500|consen 169 ILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDI 238 (517)
T ss_pred HHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccc
Confidence 3444444578899999999999999999885 799999987 568899998888888 5699999999885
No 278
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=97.05 E-value=0.0003 Score=74.83 Aligned_cols=46 Identities=22% Similarity=0.360 Sum_probs=40.0
Q ss_pred CCCCCCCCcccccccccccccccCCCCCCCccccCcCccCCCCCCC
Q 003969 72 SPSPSLHPLHKTSLCSYFRKVGTCCHGSTCRYAHGEEELRIRPDNT 117 (783)
Q Consensus 72 ~~~~~~~~~~kt~~c~~~~~~~~c~~g~~c~~ahg~~elr~~~~~~ 117 (783)
.........|||+-|..|.+.|.|+||.+|.|+||..++-.++.+.
T Consensus 263 l~~k~k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie~~~~~ 308 (351)
T COG5063 263 LKSKKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYEEA 308 (351)
T ss_pred ccccccccccccCCccchhhcccCccccccccccCChhhccccccc
Confidence 3445566889999999999999999999999999999998877665
No 279
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.05 E-value=0.0011 Score=69.36 Aligned_cols=67 Identities=19% Similarity=0.304 Sum_probs=51.1
Q ss_pred ccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHH-------c-----CCCcEEEEEccHHHHHH
Q 003969 597 ADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEI-------N-----GIKNCRFVCAKAEDVMG 663 (783)
Q Consensus 597 l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~-------n-----gl~nv~f~~gDaed~l~ 663 (783)
+...++.+||..|||.|...+.||.++..|+|||+++.||+.|.+.... . ...+|++++||..++-+
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~ 111 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP 111 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence 3455677999999999999999999999999999999999998432211 0 11358999999988543
No 280
>PLN02823 spermine synthase
Probab=96.97 E-value=0.0065 Score=67.46 Aligned_cols=64 Identities=14% Similarity=0.205 Sum_probs=53.9
Q ss_pred CCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHHcC----CCcEEEEEccHHHHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEING----IKNCRFVCAKAEDVMGS 664 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~ng----l~nv~f~~gDaed~l~~ 664 (783)
...+||-||+|.|..+..+.+. ..+|+.||+++..++.|++....++ -.+++++.+|+.+++..
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~ 172 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK 172 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh
Confidence 3468999999999999988775 4789999999999999999876442 24699999999998853
No 281
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.91 E-value=0.0016 Score=70.66 Aligned_cols=73 Identities=19% Similarity=0.235 Sum_probs=63.4
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhccceeeE-------eec-----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeE
Q 003969 166 LSKCLVHLPRKWHSDNLKKFLADHGILYKS-------AKK-----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLK 233 (783)
Q Consensus 166 ~~i~V~nLp~~~~~~~Lkklf~~~~v~~~~-------i~~-----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~ 233 (783)
-.|||.|||-.++.+++.++|+++||.... +|. |.-+|=|-++|--.|...-||+.|++..+.|++|+
T Consensus 135 t~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~r 214 (382)
T KOG1548|consen 135 TSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLR 214 (382)
T ss_pred ceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEEE
Confidence 359999999999999999999999864332 222 55679999999999999999999999999999999
Q ss_pred EEecC
Q 003969 234 VANVV 238 (783)
Q Consensus 234 V~~A~ 238 (783)
|..|+
T Consensus 215 VerAk 219 (382)
T KOG1548|consen 215 VERAK 219 (382)
T ss_pred Eehhh
Confidence 99874
No 282
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.86 E-value=0.0032 Score=66.97 Aligned_cols=72 Identities=17% Similarity=0.226 Sum_probs=58.7
Q ss_pred HHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHHH
Q 003969 590 YSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAEDV 661 (783)
Q Consensus 590 ~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gDaed~ 661 (783)
.+.|.+.+.+.++..||++|-|||.++..|...+++|+++|+++.++....+..+-... ...+++.||+...
T Consensus 47 ~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~ 119 (315)
T KOG0820|consen 47 IDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT 119 (315)
T ss_pred HHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccC
Confidence 34455666788899999999999999999999999999999999999988876542222 2489999997653
No 283
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.84 E-value=0.0026 Score=64.87 Aligned_cols=42 Identities=24% Similarity=0.396 Sum_probs=35.9
Q ss_pred CCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHR 641 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~ 641 (783)
.+|..|||.|||+|+.+++..+...+.+|+|+++..++.|++
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 468899999999999999999999999999999999999874
No 284
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.83 E-value=0.003 Score=65.37 Aligned_cols=71 Identities=23% Similarity=0.244 Sum_probs=48.5
Q ss_pred HHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHH-------HcCC--CcEEEEEccH
Q 003969 590 YSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAE-------INGI--KNCRFVCAKA 658 (783)
Q Consensus 590 ~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~-------~ngl--~nv~f~~gDa 658 (783)
+..+++.+.+.++..++|||||.|..-+.+|.. +.+++|||+.+...+.|+.+.+ ..|. ..+.+..||.
T Consensus 31 ~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 31 VSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 344556667888999999999999998877754 5789999999999988886543 2344 4588899987
Q ss_pred HH
Q 003969 659 ED 660 (783)
Q Consensus 659 ed 660 (783)
.+
T Consensus 111 l~ 112 (205)
T PF08123_consen 111 LD 112 (205)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 285
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.76 E-value=0.0011 Score=67.40 Aligned_cols=83 Identities=17% Similarity=0.224 Sum_probs=67.1
Q ss_pred CccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEE
Q 003969 576 TAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654 (783)
Q Consensus 576 ~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~ 654 (783)
.-|+---...-..+.+++...-..-.|.+|||+|+|+|.-++..++.+ +.|++.|+.+..+..++.|++.||+ ++.|.
T Consensus 54 Ppfwa~~WagG~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~ 132 (218)
T COG3897 54 PPFWAFAWAGGQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV-SILFT 132 (218)
T ss_pred chHHHHHHhhhHHHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc-eeEEe
Confidence 334333344455667777777777789999999999999999999885 6999999999999999999999997 58887
Q ss_pred EccHH
Q 003969 655 CAKAE 659 (783)
Q Consensus 655 ~gDae 659 (783)
..|.-
T Consensus 133 ~~d~~ 137 (218)
T COG3897 133 HADLI 137 (218)
T ss_pred ecccc
Confidence 77653
No 286
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.54 E-value=0.016 Score=60.55 Aligned_cols=68 Identities=24% Similarity=0.305 Sum_probs=60.6
Q ss_pred CCCeEEEecCCcCHHHHHHhhh---CCEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHHHHHHHHhh
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAEDVMGSLLKD 668 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~---~~~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~~gDaed~l~~l~~~ 668 (783)
..+++||||.-||.-++.+|.. .++|+++|+++++.+.+.+-.+..|+. .|+|+.|++.+.|.++.+.
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~ 144 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLAD 144 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhc
Confidence 4578999999999888888876 379999999999999999999999995 5999999999999998765
No 287
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.53 E-value=0.0018 Score=74.30 Aligned_cols=79 Identities=20% Similarity=0.281 Sum_probs=68.2
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
.....+|+|+|||.+.++.++++++..+| +..-.+.+ +-++||+|.+|-+.-..+.||..|||+.+.+++|.|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 44567899999999999999999999984 44444444 67899999999999999999999999999999999987
Q ss_pred cCCC
Q 003969 237 VVPR 240 (783)
Q Consensus 237 A~pr 240 (783)
|-+-
T Consensus 366 A~~g 369 (500)
T KOG0120|consen 366 AIVG 369 (500)
T ss_pred hhcc
Confidence 7543
No 288
>PRK11524 putative methyltransferase; Provisional
Probab=96.50 E-value=0.0065 Score=65.82 Aligned_cols=57 Identities=23% Similarity=0.226 Sum_probs=47.7
Q ss_pred HHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHH
Q 003969 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAE 644 (783)
Q Consensus 587 e~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~ 644 (783)
..|...++.... .+|..|||-|||+|+.+++..+...+.+|+|++++.++.|++.+.
T Consensus 195 ~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 195 EALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred HHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHH
Confidence 345555555433 578999999999999999999999999999999999999998864
No 289
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.48 E-value=0.0017 Score=68.04 Aligned_cols=115 Identities=21% Similarity=0.393 Sum_probs=71.8
Q ss_pred ccccccccccCCCCCCCccccCcCccC---------CCCCCCCCcchHHHHhhhhhcccchhhhhhhhhHHhhhhccccC
Q 003969 85 LCSYFRKVGTCCHGSTCRYAHGEEELR---------IRPDNTWDPTSERAKKARKLEDGDKCEAKEDAVEEVMMTEAVVD 155 (783)
Q Consensus 85 ~c~~~~~~~~c~~g~~c~~ahg~~elr---------~~~~~~~~~~s~r~k~~~k~e~~E~~~~~e~~~~~~~~~~~~~~ 155 (783)
-|.|+.+.|.|.+|++|.=.|-..+.- +.|+++|+-...++...- +.+....+|+-.
T Consensus 17 ~c~fy~k~gacR~gdrcsR~h~kpt~s~t~ll~nmyq~P~~~~~~~d~~~~~~~---de~~q~~~defy----------- 82 (260)
T KOG2202|consen 17 NCSFYFKIGACRHGDRCSRLHEKPTFSQTVLLKNMYQNPENSWERRDAQGQFLT---DEELQRHEDEFY----------- 82 (260)
T ss_pred ccchHHhhcccccccHHHHhhcccccchHHHHHHHHhCCCCCchhhhhcccccc---HHHHHHHHHHHH-----------
Confidence 599999999999999998888877654 677887764222111100 111111122111
Q ss_pred CCCCCCCCccccEEEeCCCcccCHHHHHHHhh-hcc-ceeeEeecc---CCccEEEEEeCCHHHHHHHHHHHcCCccCCc
Q 003969 156 GDGDGDQDVELSKCLVHLPRKWHSDNLKKFLA-DHG-ILYKSAKKK---KGMTVGFVKFESVEQLKNAVEELEGISIGNK 230 (783)
Q Consensus 156 ~~~~~~~~~~~~i~V~nLp~~~~~~~Lkklf~-~~~-v~~~~i~~~---r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr 230 (783)
++|-..|+ ++| |...+|-.. .-.|=.||.|..+|+|++|++.|||--|.|+
T Consensus 83 ------------------------Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~ 138 (260)
T KOG2202|consen 83 ------------------------EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGR 138 (260)
T ss_pred ------------------------HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCC
Confidence 22222222 442 322222221 2347789999999999999999999999999
Q ss_pred eeEEEec
Q 003969 231 TLKVANV 237 (783)
Q Consensus 231 ~L~V~~A 237 (783)
.|.+...
T Consensus 139 pi~ae~~ 145 (260)
T KOG2202|consen 139 PIHAELS 145 (260)
T ss_pred cceeeec
Confidence 9876544
No 290
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.45 E-value=0.024 Score=66.46 Aligned_cols=64 Identities=16% Similarity=0.253 Sum_probs=56.8
Q ss_pred CCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~~ 664 (783)
.+..+||||||.|.+.+.+|... ..++|||+....+..|.+.+...++.|+.++++|+..+...
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~ 412 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILND 412 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHh
Confidence 45789999999999999999985 58999999999999999999999999999999998765543
No 291
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.01 Score=64.55 Aligned_cols=78 Identities=15% Similarity=0.252 Sum_probs=68.5
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
..++.-++|=-|..-+++++|.-+|+.|| |.++.|+. |.+--||||+|++.|.-++|.=+|++..++.|.|.|-.
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 45566799999999999999999999996 77777776 45678999999999999999999999999999999976
Q ss_pred cCC
Q 003969 237 VVP 239 (783)
Q Consensus 237 A~p 239 (783)
.+.
T Consensus 316 SQS 318 (479)
T KOG0415|consen 316 SQS 318 (479)
T ss_pred hhh
Confidence 543
No 292
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=96.42 E-value=0.0037 Score=65.54 Aligned_cols=44 Identities=16% Similarity=0.471 Sum_probs=40.4
Q ss_pred CCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAE 644 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~ 644 (783)
.+..+||+||.+|.+++.+|+.+ ..|+||||++..|..|++|++
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r 103 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIR 103 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcc
Confidence 45789999999999999999985 689999999999999999875
No 293
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=96.40 E-value=0.0018 Score=71.31 Aligned_cols=31 Identities=35% Similarity=0.868 Sum_probs=26.0
Q ss_pred cccccccccccCCCCCCCccccCc----CccCCCCC
Q 003969 84 SLCSYFRKVGTCCHGSTCRYAHGE----EELRIRPD 115 (783)
Q Consensus 84 ~~c~~~~~~~~c~~g~~c~~ahg~----~elr~~~~ 115 (783)
..|.||.. |.|++|.+|||.||. ++||+-.+
T Consensus 141 kpC~ffLe-g~CRF~enCRfSHG~~V~lsslr~yq~ 175 (486)
T KOG2185|consen 141 KPCKFFLE-GRCRFGENCRFSHGLDVPLSSLRNYQQ 175 (486)
T ss_pred ccchHhhc-cccccCcccccccCcccchhhcccCCC
Confidence 57999977 899999999999996 57776543
No 294
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.40 E-value=0.002 Score=66.78 Aligned_cols=68 Identities=21% Similarity=0.319 Sum_probs=59.6
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhccceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEE
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~ 235 (783)
.+.+.|.|++-.+...+|++.|..+|.....+. ..+|+||.|.+++++.+||+.|+|.++.|+.|++.
T Consensus 99 ~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 99 HFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred cceeeeccchhhhhHHHHhhhhcccCCCchhhh---hccccceeehhhhhhhhcchhccchhhcCceeeec
Confidence 567999999999999999999999974333322 56899999999999999999999999999999993
No 295
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.37 E-value=0.021 Score=62.60 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=67.4
Q ss_pred HHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHH
Q 003969 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664 (783)
Q Consensus 587 e~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~~ 664 (783)
.+|.+.+++++.+.++..++|.-+|.|.-+..+++.. .+|+|+|.++.|++.|++.+... ..++.+++++..++...
T Consensus 6 pVll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~-~~R~~~i~~nF~~l~~~ 84 (305)
T TIGR00006 6 SVLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF-EGRVVLIHDNFANFFEH 84 (305)
T ss_pred chhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc-CCcEEEEeCCHHHHHHH
Confidence 4677888888888888999999999999999999874 79999999999999999987654 25799999999987665
Q ss_pred H
Q 003969 665 L 665 (783)
Q Consensus 665 l 665 (783)
+
T Consensus 85 l 85 (305)
T TIGR00006 85 L 85 (305)
T ss_pred H
Confidence 5
No 296
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=96.37 E-value=0.004 Score=65.59 Aligned_cols=72 Identities=18% Similarity=0.187 Sum_probs=61.8
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
.-+++|+|+-+..+..++..-|+.+| +.-+.+.+ +.++||+||.|.+.+.+.+|+. |||..+.|+.+.|...
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred CceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 45799999999999999999999884 54444444 5689999999999999999999 9999999999998754
No 297
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.30 E-value=0.018 Score=51.05 Aligned_cols=67 Identities=18% Similarity=0.201 Sum_probs=45.6
Q ss_pred cEEEeCCCcccCHHHHHHHhh----hccceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 167 SKCLVHLPRKWHSDNLKKFLA----DHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 167 ~i~V~nLp~~~~~~~Lkklf~----~~~v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
-++|-|||-+.+...++.=|. .+|-....| +.+-|+|-|.++|.|.+|.+-|+|.++=|++|.|+..
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 389999999999777665555 445443333 3478999999999999999999999999999999866
No 298
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=96.26 E-value=0.0043 Score=65.08 Aligned_cols=43 Identities=21% Similarity=0.320 Sum_probs=38.4
Q ss_pred CCCC-eEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHH
Q 003969 600 GPDT-LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRN 642 (783)
Q Consensus 600 ~~g~-~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~N 642 (783)
.++. .++|+|||+|.-++.+|.+.++|+|+|++++|++.|++.
T Consensus 31 ~~~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~ 74 (261)
T KOG3010|consen 31 TEGHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKH 74 (261)
T ss_pred CCCcceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcC
Confidence 3444 899999999988889999999999999999999999874
No 299
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.23 E-value=0.031 Score=56.97 Aligned_cols=57 Identities=23% Similarity=0.255 Sum_probs=51.2
Q ss_pred eEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 604 LLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 604 ~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
+++|+|+|.|.-|++||=.. .+|+.||.+..-+...+.-+...|++|++++++++++
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~ 109 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE 109 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc
Confidence 79999999999999988653 6899999999999999999999999999999999999
No 300
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.22 E-value=0.015 Score=60.04 Aligned_cols=72 Identities=18% Similarity=0.293 Sum_probs=50.5
Q ss_pred CCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh----CCEEEEEeCCHHHHHHHHHHHHHc
Q 003969 575 PTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR----VGMVIGIEMNASAVSDAHRNAEIN 646 (783)
Q Consensus 575 p~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~----~~~VigVE~s~~AIe~Ak~Na~~n 646 (783)
...|=-..-..+..+++..+.++.-...-+++|-|||.|.+.-.+.-. ...|+|-|+++++++.|++|+.+.
T Consensus 25 ApG~p~FPVRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LL 100 (246)
T PF11599_consen 25 APGFPAFPVRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLL 100 (246)
T ss_dssp BTTB----HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCC
T ss_pred CCCCCCccHHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhc
Confidence 333423355677788888888876566679999999999887655533 369999999999999999998643
No 301
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.20 E-value=0.0088 Score=67.43 Aligned_cols=88 Identities=18% Similarity=0.212 Sum_probs=60.8
Q ss_pred CCcccc----CCHHHHHHHHHHHhhhcc--CCCCCeEEEecCCcCHHHHHHhhh---CCEEEEEeCCHHHHHHHHHHHHH
Q 003969 575 PTAFFQ----VNTLAAEKLYSLGGDWAD--LGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEI 645 (783)
Q Consensus 575 p~sFfQ----vN~~~ae~L~~~i~~~l~--~~~g~~VLDLgCGtGti~l~LA~~---~~~VigVE~s~~AIe~Ak~Na~~ 645 (783)
..+||- .|+...-.+..+ ..... ....-+|||.-||+|.=|+-.++. ..+|++-|++++|++.+++|++.
T Consensus 18 ~~vFYNP~~~~nRDlsvl~~~~-~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~ 96 (377)
T PF02005_consen 18 APVFYNPVMEFNRDLSVLAIRY-LAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLEL 96 (377)
T ss_dssp SSSS--GGGHHHHHHHHHH----HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHH
T ss_pred CCcccCcchhcccceeehhHHH-HHHhhhhhcCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhh
Confidence 567774 455554444321 22111 123458999999999999988887 37999999999999999999999
Q ss_pred cCCCc--EEEEEccHHHHHH
Q 003969 646 NGIKN--CRFVCAKAEDVMG 663 (783)
Q Consensus 646 ngl~n--v~f~~gDaed~l~ 663 (783)
|++.. +++.+.|+..++.
T Consensus 97 N~~~~~~~~v~~~DAn~ll~ 116 (377)
T PF02005_consen 97 NGLEDERIEVSNMDANVLLY 116 (377)
T ss_dssp CT-SGCCEEEEES-HHHHHC
T ss_pred ccccCceEEEehhhHHHHhh
Confidence 99965 9999999998875
No 302
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=96.20 E-value=0.017 Score=62.77 Aligned_cols=60 Identities=15% Similarity=0.098 Sum_probs=45.5
Q ss_pred HHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHHcCCC
Q 003969 590 YSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIK 649 (783)
Q Consensus 590 ~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~ngl~ 649 (783)
++.+...+....|.+|||||||.|..+..++..+ +.|+|||-+.-.+...+.-.+..|..
T Consensus 104 W~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~ 164 (315)
T PF08003_consen 104 WDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQD 164 (315)
T ss_pred HHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCC
Confidence 3445555555678999999999999999888875 68999999988877765544444443
No 303
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.18 E-value=0.0052 Score=66.30 Aligned_cols=52 Identities=21% Similarity=0.328 Sum_probs=41.9
Q ss_pred eEEEecCCcCHHHHHHhhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 604 LLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 604 ~VLDLgCGtGti~l~LA~~-~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
+|+|||||.|.+++.|... +..|.++|+++.|++..+.|.. + .++++|+.++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~-----~-~~~~~Di~~~ 54 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP-----N-KLIEGDITKI 54 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC-----C-CCccCccccC
Confidence 6899999999999888876 4678999999999999998853 1 1566676654
No 304
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.10 E-value=0.02 Score=61.04 Aligned_cols=69 Identities=16% Similarity=0.300 Sum_probs=62.9
Q ss_pred HHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHH
Q 003969 591 SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAE 659 (783)
Q Consensus 591 ~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gDae 659 (783)
+.|+.++.+.+|.+|++-|.|+|.++.++++.+ ++++.+|+...-.+.|++..+..|+ +|+++++-|+-
T Consensus 95 a~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc 167 (314)
T KOG2915|consen 95 AMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVC 167 (314)
T ss_pred HHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecc
Confidence 457788899999999999999999999999986 7999999999999999999999999 68999888874
No 305
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.08 E-value=0.017 Score=60.26 Aligned_cols=62 Identities=21% Similarity=0.212 Sum_probs=56.3
Q ss_pred CCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHH
Q 003969 602 DTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMG 663 (783)
Q Consensus 602 g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~ 663 (783)
+.+++|+|+|.|.-|++||-. -.+|+-+|....-+...+.-.+..|++|++++++.++++-.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~ 131 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQ 131 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccc
Confidence 579999999999999998843 25799999999999999999999999999999999999764
No 306
>PRK13699 putative methylase; Provisional
Probab=96.07 E-value=0.018 Score=60.55 Aligned_cols=56 Identities=14% Similarity=0.149 Sum_probs=45.7
Q ss_pred HHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHH
Q 003969 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEI 645 (783)
Q Consensus 589 L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ 645 (783)
|...++.... .+|..|||.|||+|+.+++..+...+.+|+|++++.++.|.+.++.
T Consensus 152 l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 152 SLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred HHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence 4444444332 4688999999999999999999999999999999999999887653
No 307
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.0084 Score=61.71 Aligned_cols=74 Identities=23% Similarity=0.337 Sum_probs=57.2
Q ss_pred HHHHHHHhhhcc--CCCCCeEEEecCCcCHHHHHHhhhC----CEEEEEeCCHHHHHHHHHHHHHcC--------C--Cc
Q 003969 587 EKLYSLGGDWAD--LGPDTLLFDVCCGTGTIGLTLAHRV----GMVIGIEMNASAVSDAHRNAEING--------I--KN 650 (783)
Q Consensus 587 e~L~~~i~~~l~--~~~g~~VLDLgCGtGti~l~LA~~~----~~VigVE~s~~AIe~Ak~Na~~ng--------l--~n 650 (783)
..+|..+++++. +.+|...||+|+|+|.++.+++... ..++|||.-++.|+.+++|+...- + .+
T Consensus 66 p~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~ 145 (237)
T KOG1661|consen 66 PHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGE 145 (237)
T ss_pred hHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCc
Confidence 346677777776 7899999999999999999999763 345999999999999999987432 1 24
Q ss_pred EEEEEccHHH
Q 003969 651 CRFVCAKAED 660 (783)
Q Consensus 651 v~f~~gDaed 660 (783)
+.|+.||...
T Consensus 146 l~ivvGDgr~ 155 (237)
T KOG1661|consen 146 LSIVVGDGRK 155 (237)
T ss_pred eEEEeCCccc
Confidence 5666666554
No 308
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=95.90 E-value=0.015 Score=59.88 Aligned_cols=76 Identities=20% Similarity=0.187 Sum_probs=59.9
Q ss_pred HHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHh-hhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEE-EEEccHHHH
Q 003969 586 AEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLA-HRVGMVIGIEMNASAVSDAHRNAEINGIKNCR-FVCAKAEDV 661 (783)
Q Consensus 586 ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA-~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~-f~~gDaed~ 661 (783)
-..|++-+..++.......||++|||||+.--..- ....+|+++|.++.|-+.|.+.+..+.-.++. |+.++.+++
T Consensus 61 krelFs~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l 138 (252)
T KOG4300|consen 61 KRELFSGIYYFLGKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENL 138 (252)
T ss_pred HHHHHhhhHHHhcccCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcC
Confidence 34566666666665555578999999998665544 34579999999999999999999988777776 999998875
No 309
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=95.84 E-value=0.0044 Score=63.57 Aligned_cols=69 Identities=12% Similarity=0.136 Sum_probs=57.2
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhccceeeE-eecc---CCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEE
Q 003969 166 LSKCLVHLPRKWHSDNLKKFLADHGILYKS-AKKK---KGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235 (783)
Q Consensus 166 ~~i~V~nLp~~~~~~~Lkklf~~~~v~~~~-i~~~---r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~ 235 (783)
..|||+||...++++-|.++|-+-|-.+.. |.++ .. .||||.|.++-...-||+.|||..+.|+.|+|.
T Consensus 10 rtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~-kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 10 RTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQ-KFAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred hHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCC-ceeeeecccccchhhhhhhcccchhccchhhcc
Confidence 459999999999999999999987744333 2232 23 499999999999999999999999999988764
No 310
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=95.81 E-value=0.0092 Score=61.44 Aligned_cols=62 Identities=27% Similarity=0.464 Sum_probs=54.4
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhc-cceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCcc
Q 003969 166 LSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISI 227 (783)
Q Consensus 166 ~~i~V~nLp~~~~~~~Lkklf~~~-~v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~ 227 (783)
..++|-||...+++++||.+|+.| |....+|.-+.++..+||.|++-|.|..||.-|.|..+
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 469999999999999999999999 77766665577889999999999999999999988754
No 311
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=95.77 E-value=0.015 Score=65.90 Aligned_cols=71 Identities=23% Similarity=0.278 Sum_probs=56.3
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhccceeeEe-----eccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 166 LSKCLVHLPRKWHSDNLKKFLADHGILYKSA-----KKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 166 ~~i~V~nLp~~~~~~~Lkklf~~~~v~~~~i-----~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
.-|.+++|||.++++|+.+||+-+.|...-| ..+|+-|=|||.|+++|.+++|+..- -..+.-|=|.|-.+
T Consensus 104 ~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rh-re~iGhRYIEvF~S 179 (510)
T KOG4211|consen 104 GVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRH-RENIGHRYIEVFRS 179 (510)
T ss_pred ceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHH-HHhhccceEEeehh
Confidence 4589999999999999999999886655522 12567799999999999999998873 34466677777655
No 312
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=95.69 E-value=0.058 Score=57.41 Aligned_cols=65 Identities=11% Similarity=0.104 Sum_probs=53.9
Q ss_pred CCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCC----CcEEEEEccHHHHHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGI----KNCRFVCAKAEDVMGSL 665 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl----~nv~f~~gDaed~l~~l 665 (783)
...+||=||-|.|.....+.+.. .+|+.||+++..++.|++-...... .+++++.+|+..++...
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~ 146 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET 146 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc
Confidence 46799999999999999998875 7999999999999999997654322 47999999999998753
No 313
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=95.66 E-value=0.033 Score=57.72 Aligned_cols=60 Identities=15% Similarity=0.255 Sum_probs=50.3
Q ss_pred EEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHHHHHH
Q 003969 605 LFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAEDVMGS 664 (783)
Q Consensus 605 VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~~gDaed~l~~ 664 (783)
|+|+||-=|.+++.|.+.. .+|+++|+++..++.|+.|+..+|+. .+++..||..+.+..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~ 63 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP 63 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC
Confidence 6899999999999999985 59999999999999999999999984 599999998776643
No 314
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=95.63 E-value=0.02 Score=63.49 Aligned_cols=60 Identities=18% Similarity=0.362 Sum_probs=42.3
Q ss_pred CCCeEEEecCCcCHHH-HHHhhhCCEEEEEeCCHHHHHHHHHHHHHc-------CC---CcEEEEEccHHH
Q 003969 601 PDTLLFDVCCGTGTIG-LTLAHRVGMVIGIEMNASAVSDAHRNAEIN-------GI---KNCRFVCAKAED 660 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~-l~LA~~~~~VigVE~s~~AIe~Ak~Na~~n-------gl---~nv~f~~gDaed 660 (783)
++.+|||||||-|.-. -........++|+|++..+|+.|++..+.. .. -...|+++|...
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~ 132 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFS 132 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCC
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheecccccc
Confidence 5789999999966644 455556799999999999999999987321 11 247888988753
No 315
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.58 E-value=0.041 Score=61.14 Aligned_cols=82 Identities=18% Similarity=0.226 Sum_probs=65.2
Q ss_pred cCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCC--EEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEcc
Q 003969 580 QVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG--MVIGIEMNASAVSDAHRNAEINGIKNCRFVCAK 657 (783)
Q Consensus 580 QvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~--~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gD 657 (783)
|.|+...-.+.+...+.. ..+|+|..||||.=|+-.|.... +|+.=|++|.|++.++.|++.|...+...+..|
T Consensus 35 ~~NRDlsV~~l~~~~~~~----~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~D 110 (380)
T COG1867 35 EFNRDLSVLVLKAFGKLL----PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKD 110 (380)
T ss_pred hhccchhHHHHHHhhccC----CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecch
Confidence 356666555544443322 56899999999999999887742 799999999999999999999977777888899
Q ss_pred HHHHHHHH
Q 003969 658 AEDVMGSL 665 (783)
Q Consensus 658 aed~l~~l 665 (783)
+..++...
T Consensus 111 AN~lm~~~ 118 (380)
T COG1867 111 ANALLHEL 118 (380)
T ss_pred HHHHHHhc
Confidence 99888763
No 316
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.52 E-value=0.012 Score=63.75 Aligned_cols=70 Identities=17% Similarity=0.128 Sum_probs=59.6
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcccee-eEeec------cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEE
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHGILY-KSAKK------KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKV 234 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~v~~-~~i~~------~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V 234 (783)
.|-+|||||-|+++++||-|.+...|+.- ..+|- |.++|||.|...++...++-|+.|-..++.|..-.|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 35589999999999999999999987643 33332 689999999999999999999999999999986555
No 317
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=95.51 E-value=0.021 Score=64.18 Aligned_cols=65 Identities=17% Similarity=0.272 Sum_probs=57.6
Q ss_pred hccCCCCCeEEEecCCcCHHHHHHhhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 596 WADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 596 ~l~~~~g~~VLDLgCGtGti~l~LA~~---~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
.+.+++|.+|||+||-.|.=+.++|.. -+.|++.|.+..-++..+.|+.+.|++|....+.|..+
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~e 303 (460)
T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGRE 303 (460)
T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCccc
Confidence 356789999999999999999888876 36899999999999999999999999998888888763
No 318
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=95.40 E-value=0.18 Score=54.76 Aligned_cols=63 Identities=6% Similarity=0.083 Sum_probs=54.3
Q ss_pred CeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcC----CCcEEEEEccHHHHHHHH
Q 003969 603 TLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEING----IKNCRFVCAKAEDVMGSL 665 (783)
Q Consensus 603 ~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ng----l~nv~f~~gDaed~l~~l 665 (783)
.+||=||-|.|..+-.+.++. .+++.||+++..|+.|++-..... -.+++++.+|+.+++...
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~ 146 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC 146 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC
Confidence 599999999999999999885 799999999999999999765432 256999999999988753
No 319
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=95.29 E-value=0.11 Score=56.79 Aligned_cols=89 Identities=15% Similarity=0.092 Sum_probs=47.5
Q ss_pred CeEE-EECCCccccCCHHHHHHHHHHHhhhccCCC-----CCeEEEecCCcCHH-HHHHhhh-CCEEEEEeCCHHHHHHH
Q 003969 568 NLRF-CISPTAFFQVNTLAAEKLYSLGGDWADLGP-----DTLLFDVCCGTGTI-GLTLAHR-VGMVIGIEMNASAVSDA 639 (783)
Q Consensus 568 gl~f-~isp~sFfQvN~~~ae~L~~~i~~~l~~~~-----g~~VLDLgCGtGti-~l~LA~~-~~~VigVE~s~~AIe~A 639 (783)
|+.+ .+.++.... ....-..-+.++.+++.... .-++||+|+|.-.| .|..++. .-+++|.|+++.+++.|
T Consensus 64 gl~~wdiP~~~LcP-~iP~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A 142 (299)
T PF05971_consen 64 GLDVWDIPEGRLCP-PIPNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESA 142 (299)
T ss_dssp --------TTS-----HHHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHH
T ss_pred CCccccCCCCCcCC-CCchhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHH
Confidence 4444 455444432 22222222345556554322 34799999998877 3433433 57999999999999999
Q ss_pred HHHHHHc-CCC-cEEEEEcc
Q 003969 640 HRNAEIN-GIK-NCRFVCAK 657 (783)
Q Consensus 640 k~Na~~n-gl~-nv~f~~gD 657 (783)
++|++.| ++. .|+++...
T Consensus 143 ~~nv~~N~~L~~~I~l~~~~ 162 (299)
T PF05971_consen 143 RENVERNPNLESRIELRKQK 162 (299)
T ss_dssp HHHHHHT-T-TTTEEEEE--
T ss_pred HHHHHhccccccceEEEEcC
Confidence 9999999 885 58887664
No 320
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=95.27 E-value=0.079 Score=57.37 Aligned_cols=62 Identities=18% Similarity=0.254 Sum_probs=53.6
Q ss_pred CCCCeEEEecCCcCHHHHHHhhhC----CEEEEEeCCHHHHHHHHHHHHHcCCCcE-EEEEccHHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHRV----GMVIGIEMNASAVSDAHRNAEINGIKNC-RFVCAKAEDV 661 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~~----~~VigVE~s~~AIe~Ak~Na~~ngl~nv-~f~~gDaed~ 661 (783)
...-+|||++||.|..-+-..... ..|...|.++..|+..++-++..|+.++ +|.++|+.+.
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~ 200 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDR 200 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCH
Confidence 345699999999999888555442 5899999999999999999999999886 9999999885
No 321
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.04 E-value=0.04 Score=64.53 Aligned_cols=74 Identities=19% Similarity=0.197 Sum_probs=63.1
Q ss_pred CCccc-cEEEeCCCcccCHHHHHHHhhhccceeeEeec-----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEE
Q 003969 162 QDVEL-SKCLVHLPRKWHSDNLKKFLADHGILYKSAKK-----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235 (783)
Q Consensus 162 ~~~~~-~i~V~nLp~~~~~~~Lkklf~~~~v~~~~i~~-----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~ 235 (783)
..++. -|-+.|+|+.++.+|+-+||..|.+....|.+ |..-|=+.|.|++.|+|..|..-|+|..+..|++++.
T Consensus 863 ~~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 863 KSPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred CCCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 34566 47899999999999999999999876665555 3445888999999999999999999999999998864
No 322
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=95.03 E-value=0.063 Score=58.08 Aligned_cols=54 Identities=20% Similarity=0.364 Sum_probs=46.6
Q ss_pred eEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHH
Q 003969 604 LLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664 (783)
Q Consensus 604 ~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~~ 664 (783)
+++|||||.|.+++.|.+.+ .-|.++|+++.|++.-+.|.. ...++|+.++...
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~ 56 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPS 56 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHH
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-------ccccccccccccc
Confidence 68999999999999998875 689999999999999999964 7888999887654
No 323
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=95.00 E-value=0.078 Score=53.05 Aligned_cols=75 Identities=19% Similarity=0.217 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccH
Q 003969 582 NTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658 (783)
Q Consensus 582 N~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDa 658 (783)
....+++|. ..+....|.-||++|.|||.|+-.+.+++ ..+++||.+++-+....+. ...+.++.||+
T Consensus 33 Ss~lA~~M~----s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~-----~p~~~ii~gda 103 (194)
T COG3963 33 SSILARKMA----SVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL-----YPGVNIINGDA 103 (194)
T ss_pred cHHHHHHHH----hccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh-----CCCccccccch
Confidence 344555544 33456678899999999999999888875 5899999999998877654 24577999999
Q ss_pred HHHHHHH
Q 003969 659 EDVMGSL 665 (783)
Q Consensus 659 ed~l~~l 665 (783)
.++-..+
T Consensus 104 ~~l~~~l 110 (194)
T COG3963 104 FDLRTTL 110 (194)
T ss_pred hhHHHHH
Confidence 9865443
No 324
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=94.77 E-value=0.063 Score=56.34 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=49.6
Q ss_pred HHhhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHH
Q 003969 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMG 663 (783)
Q Consensus 592 ~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~ 663 (783)
.+..........+|+|||+|.|.++..+++.. -+++.+|+ |..++.|++ .++|+++.||..+-++
T Consensus 91 ~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~~~P 157 (241)
T PF00891_consen 91 ILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFFDPLP 157 (241)
T ss_dssp HHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TTTCCS
T ss_pred hhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHHhhhc
Confidence 34444455566789999999999999999885 58999999 888988887 5689999999875443
No 325
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=94.72 E-value=0.048 Score=59.87 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=65.6
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcccee-------------eEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCce
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHGILY-------------KSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKT 231 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~v~~-------------~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~ 231 (783)
..+|||-+||-+++..++..+|.++++.- ..+++.+.+|=|-|+|.+.-.|+.||+-++|.+|.|.+
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ 145 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNT 145 (351)
T ss_pred cccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCC
Confidence 45799999999999999999999885411 11112467899999999999999999999999999999
Q ss_pred eEEEecCCCCc
Q 003969 232 LKVANVVPRSF 242 (783)
Q Consensus 232 L~V~~A~pr~~ 242 (783)
|+|..|..++-
T Consensus 146 ikvs~a~~r~~ 156 (351)
T KOG1995|consen 146 IKVSLAERRTG 156 (351)
T ss_pred chhhhhhhccC
Confidence 99999976653
No 326
>PHA01634 hypothetical protein
Probab=94.66 E-value=0.064 Score=51.33 Aligned_cols=48 Identities=15% Similarity=0.074 Sum_probs=43.8
Q ss_pred CCCeEEEecCCcCHHHHHHhhh-CCEEEEEeCCHHHHHHHHHHHHHcCC
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGI 648 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~-~~~VigVE~s~~AIe~Ak~Na~~ngl 648 (783)
.+.+|+|+|++.|.-++.++.+ +++|+++|.++...+..++|++.|.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI 76 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNI 76 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhee
Confidence 5789999999999999998877 47999999999999999999998765
No 327
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=94.66 E-value=0.02 Score=62.80 Aligned_cols=44 Identities=27% Similarity=0.462 Sum_probs=39.4
Q ss_pred hhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHH
Q 003969 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSD 638 (783)
Q Consensus 595 ~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~ 638 (783)
..+...+|+.|+|-+.|||.+-++.|+.++.|+|-||+-.++..
T Consensus 202 N~Amv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vra 245 (421)
T KOG2671|consen 202 NQAMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRA 245 (421)
T ss_pred hhhccCCCCEEecCccccCceeeehhhhcceeeccccchheeec
Confidence 34456789999999999999999999999999999999998874
No 328
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=94.60 E-value=0.096 Score=48.60 Aligned_cols=57 Identities=23% Similarity=0.396 Sum_probs=38.5
Q ss_pred cEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCC
Q 003969 167 SKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGI 225 (783)
Q Consensus 167 ~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~ 225 (783)
=|+|.|++..++-++||.+|++++ |.++...+ +..-|||-|.+++.|++|++++.-.
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~--G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR--GDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--T--T-SEEEEEESS---HHHHHHHHHHT
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecC--CCCEEEEEECCcchHHHHHHHHHhc
Confidence 478888999999999999999995 66555544 4668999999999999999999876
No 329
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=94.59 E-value=0.036 Score=61.06 Aligned_cols=70 Identities=16% Similarity=0.235 Sum_probs=60.4
Q ss_pred EEEeCCCcccCHHHHHHHhhhc--ccee--eEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 168 KCLVHLPRKWHSDNLKKFLADH--GILY--KSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 168 i~V~nLp~~~~~~~Lkklf~~~--~v~~--~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
|.+++||+..+-+++-.||..| .+.+ +.+.. ||..|=|||.|+++|.|..|+.+-+....|+|-|.|-.+
T Consensus 283 vRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 283 VRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred eEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 8899999999999999999988 4555 33333 677799999999999999999999999999999998654
No 330
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=94.56 E-value=0.039 Score=55.32 Aligned_cols=65 Identities=22% Similarity=0.403 Sum_probs=45.3
Q ss_pred HHHHHHHHHhhhc--cCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHH
Q 003969 585 AAEKLYSLGGDWA--DLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659 (783)
Q Consensus 585 ~ae~L~~~i~~~l--~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDae 659 (783)
++-+|+.....+- ....+.+||||||++|.++..+.++. .+|+|||+.+. ..+.++.++++|..
T Consensus 5 a~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~ 73 (181)
T PF01728_consen 5 AAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDIT 73 (181)
T ss_dssp HHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGE
T ss_pred HHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccc
Confidence 3445665444432 22245899999999999999999987 79999999877 23356777777764
Q ss_pred H
Q 003969 660 D 660 (783)
Q Consensus 660 d 660 (783)
+
T Consensus 74 ~ 74 (181)
T PF01728_consen 74 N 74 (181)
T ss_dssp E
T ss_pred h
Confidence 3
No 331
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=94.40 E-value=0.095 Score=57.30 Aligned_cols=73 Identities=12% Similarity=0.149 Sum_probs=53.1
Q ss_pred cccEEEeCCC--cc--cC-------HHHHHHHhhhcccee-eEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCcee
Q 003969 165 ELSKCLVHLP--RK--WH-------SDNLKKFLADHGILY-KSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTL 232 (783)
Q Consensus 165 ~~~i~V~nLp--~~--~~-------~~~Lkklf~~~~v~~-~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L 232 (783)
.-.|.++||- .. .+ .++|+.=+.++|..- +.|--+...|.+-|+|+|.++|+.+|+.|+|.-|.||+|
T Consensus 265 ~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql 344 (382)
T KOG1548|consen 265 DRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQL 344 (382)
T ss_pred CcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEE
Confidence 4458889982 21 12 234445566777433 333336778999999999999999999999999999999
Q ss_pred EEEec
Q 003969 233 KVANV 237 (783)
Q Consensus 233 ~V~~A 237 (783)
.+..-
T Consensus 345 ~A~i~ 349 (382)
T KOG1548|consen 345 TASIW 349 (382)
T ss_pred EEEEe
Confidence 87643
No 332
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=94.30 E-value=0.066 Score=56.50 Aligned_cols=71 Identities=17% Similarity=0.210 Sum_probs=44.5
Q ss_pred HhhhccCCCCC--eEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHH---HHHHcC-C-----CcEEEEEccHHHH
Q 003969 593 GGDWADLGPDT--LLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHR---NAEING-I-----KNCRFVCAKAEDV 661 (783)
Q Consensus 593 i~~~l~~~~g~--~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~---Na~~ng-l-----~nv~f~~gDaed~ 661 (783)
+++.+++.++. +|||.-+|-|.-++.||..+.+|+++|-++-.....+. ++.... + .+++++++|..++
T Consensus 65 l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~ 144 (234)
T PF04445_consen 65 LAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEY 144 (234)
T ss_dssp HHHHTT-BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCH
T ss_pred HHHHhCCCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHH
Confidence 44455555654 89999999999999999888899999999976655443 333221 1 3578888887766
Q ss_pred HH
Q 003969 662 MG 663 (783)
Q Consensus 662 l~ 663 (783)
|.
T Consensus 145 L~ 146 (234)
T PF04445_consen 145 LR 146 (234)
T ss_dssp CC
T ss_pred Hh
Confidence 54
No 333
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=94.15 E-value=0.094 Score=56.94 Aligned_cols=71 Identities=15% Similarity=0.354 Sum_probs=52.1
Q ss_pred EEEeCCCcccCHHHH------HHHhhhcc-ceeeEeeccCC-----ccEE--EEEeCCHHHHHHHHHHHcCCccCCceeE
Q 003969 168 KCLVHLPRKWHSDNL------KKFLADHG-ILYKSAKKKKG-----MTVG--FVKFESVEQLKNAVEELEGISIGNKTLK 233 (783)
Q Consensus 168 i~V~nLp~~~~~~~L------kklf~~~~-v~~~~i~~~r~-----~gfg--FVtF~s~Eea~kAIe~LnG~~~~Gr~L~ 233 (783)
+||-+||..+-.++. -++|.+|| |.-..|-++-+ .+.+ ||||.+.|+|..+|...+|..++||.|+
T Consensus 117 vYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lk 196 (480)
T COG5175 117 VYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLK 196 (480)
T ss_pred eEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceEe
Confidence 789999888877763 46777775 32222222211 1333 9999999999999999999999999999
Q ss_pred EEecC
Q 003969 234 VANVV 238 (783)
Q Consensus 234 V~~A~ 238 (783)
+.--.
T Consensus 197 atYGT 201 (480)
T COG5175 197 ATYGT 201 (480)
T ss_pred eecCc
Confidence 86543
No 334
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=94.14 E-value=0.03 Score=36.04 Aligned_cols=19 Identities=26% Similarity=0.861 Sum_probs=16.3
Q ss_pred ccccccccccCCCCCCCccccC
Q 003969 85 LCSYFRKVGTCCHGSTCRYAHG 106 (783)
Q Consensus 85 ~c~~~~~~~~c~~g~~c~~ahg 106 (783)
.|++| ..|.+|+.|.|+|.
T Consensus 1 ~Ck~~---~~C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFG---PNCTNGDNCPFSHP 19 (19)
T ss_pred CCcCc---CCCCCCCcCccCCc
Confidence 59988 34999999999994
No 335
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=94.00 E-value=0.32 Score=53.87 Aligned_cols=87 Identities=11% Similarity=0.080 Sum_probs=59.3
Q ss_pred ccccCCHHHH--HHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh------CCEEEEEeCCHHHHHHHHHHHHHcCC
Q 003969 577 AFFQVNTLAA--EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR------VGMVIGIEMNASAVSDAHRNAEINGI 648 (783)
Q Consensus 577 sFfQvN~~~a--e~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~------~~~VigVE~s~~AIe~Ak~Na~~ngl 648 (783)
.||+++++.. +.....|...+ .++..|+|||||.|.=+..|... ....++||+|.++++.+..++..-.+
T Consensus 52 EYYptr~E~~iL~~~~~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~ 129 (319)
T TIGR03439 52 EYYLTNDEIEILKKHSSDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF 129 (319)
T ss_pred ccCChHHHHHHHHHHHHHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC
Confidence 3456655421 22233344433 35668999999999876654432 24689999999999999999874455
Q ss_pred CcEEE--EEccHHHHHHHH
Q 003969 649 KNCRF--VCAKAEDVMGSL 665 (783)
Q Consensus 649 ~nv~f--~~gDaed~l~~l 665 (783)
..+++ ++||-.+.+..+
T Consensus 130 p~l~v~~l~gdy~~~l~~l 148 (319)
T TIGR03439 130 SHVRCAGLLGTYDDGLAWL 148 (319)
T ss_pred CCeEEEEEEecHHHHHhhc
Confidence 55555 899998876544
No 336
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=93.85 E-value=0.028 Score=60.29 Aligned_cols=38 Identities=45% Similarity=0.860 Sum_probs=34.4
Q ss_pred CCCCcccc--cccccccccccCCC---CCCCccc---cCcCccCCC
Q 003969 76 SLHPLHKT--SLCSYFRKVGTCCH---GSTCRYA---HGEEELRIR 113 (783)
Q Consensus 76 ~~~~~~kt--~~c~~~~~~~~c~~---g~~c~~a---hg~~elr~~ 113 (783)
...++||| .||..|...|+|+| |++|+|| ||-.||...
T Consensus 221 ~n~~L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k 266 (351)
T COG5063 221 QNKPLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSK 266 (351)
T ss_pred ccchhhcCCHHHhhccCcCCCCcccccccccccccccccccccccc
Confidence 45689999 99999999999999 9999999 999888653
No 337
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=93.80 E-value=0.059 Score=62.04 Aligned_cols=66 Identities=24% Similarity=0.360 Sum_probs=57.7
Q ss_pred cEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeE
Q 003969 167 SKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLK 233 (783)
Q Consensus 167 ~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~ 233 (783)
.+.|-|||..++.++|..+|+.|| |..++ ...-.+|.-||.|=+.-+|+.|++.||+.++.|+.|+
T Consensus 77 ~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir-~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 77 TLVVFNLPRSVSNDTLLRIFGAYGEIREIR-ETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred eEEEEecCCcCCHHHHHHHHHhhcchhhhh-cccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 499999999999999999999995 55422 2244579999999999999999999999999999988
No 338
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=93.79 E-value=0.56 Score=49.70 Aligned_cols=62 Identities=15% Similarity=0.100 Sum_probs=38.7
Q ss_pred CCCeEEEecCCcCHHHHHHhh--hCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAH--RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~--~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~~ 664 (783)
.|.+||=||=+- .+++++|. ..++|+.+|+++..++..++.++..|+. ++.+..|+.+-++.
T Consensus 44 ~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~ 107 (243)
T PF01861_consen 44 EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPE 107 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---T
T ss_pred cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCH
Confidence 578898776333 44555554 4589999999999999999999999997 99999998876653
No 339
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=93.68 E-value=0.15 Score=56.63 Aligned_cols=73 Identities=15% Similarity=0.106 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhhhc-------cCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 003969 583 TLAAEKLYSLGGDWA-------DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVC 655 (783)
Q Consensus 583 ~~~ae~L~~~i~~~l-------~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~ 655 (783)
...+-+|...+..+. .+.+|.++|||||++|.++..|.+++.+|+|||..+-+ .. ...-.+|..+.
T Consensus 186 SRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~-~~------L~~~~~V~h~~ 258 (357)
T PRK11760 186 SRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMA-QS------LMDTGQVEHLR 258 (357)
T ss_pred ChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcC-Hh------hhCCCCEEEEe
Confidence 334446655544443 13578999999999999999999999999999955421 11 12234677777
Q ss_pred ccHHHHH
Q 003969 656 AKAEDVM 662 (783)
Q Consensus 656 gDaed~l 662 (783)
+|...+.
T Consensus 259 ~d~fr~~ 265 (357)
T PRK11760 259 ADGFKFR 265 (357)
T ss_pred ccCcccC
Confidence 7776654
No 340
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.52 E-value=0.094 Score=51.37 Aligned_cols=77 Identities=23% Similarity=0.200 Sum_probs=59.6
Q ss_pred cCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEcc
Q 003969 580 QVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAK 657 (783)
Q Consensus 580 QvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~~gD 657 (783)
...+++.+.. +.++.-.+..+++|||+|-|.+-+..++.+ ...+|||+++-.+..++..+-+.|+. ...|..-|
T Consensus 55 pAtteQv~nV----LSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~Rkd 130 (199)
T KOG4058|consen 55 PATTEQVENV----LSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKD 130 (199)
T ss_pred CccHHHHHHH----HHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhh
Confidence 3455665554 444444565689999999999999999987 68899999999999999998888873 46776666
Q ss_pred HHH
Q 003969 658 AED 660 (783)
Q Consensus 658 aed 660 (783)
+-+
T Consensus 131 lwK 133 (199)
T KOG4058|consen 131 LWK 133 (199)
T ss_pred hhh
Confidence 543
No 341
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=93.41 E-value=0.2 Score=53.63 Aligned_cols=61 Identities=21% Similarity=0.253 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHh-hhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHH
Q 003969 581 VNTLAAEKLYSLGG-DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHR 641 (783)
Q Consensus 581 vN~~~ae~L~~~i~-~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~ 641 (783)
....|...|...-. .+.......++||||+|.|.++..++..+.+|++.|+|+.|....++
T Consensus 73 fS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~ 134 (265)
T PF05219_consen 73 FSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSK 134 (265)
T ss_pred ecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHh
Confidence 45566666665432 12122245689999999999999999999999999999999766654
No 342
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=93.30 E-value=0.059 Score=56.75 Aligned_cols=87 Identities=13% Similarity=0.180 Sum_probs=55.6
Q ss_pred CCeEEEECCCccccCCHHHHHHHHHHHhhhccCCCCC--eEEEecCCcCHHHHHHhhhC----CEEEEEeCCHHHHHHHH
Q 003969 567 SNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDT--LLFDVCCGTGTIGLTLAHRV----GMVIGIEMNASAVSDAH 640 (783)
Q Consensus 567 ~gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~~g~--~VLDLgCGtGti~l~LA~~~----~~VigVE~s~~AIe~Ak 640 (783)
++.-|.+.-+-||....- |....-+++...... +||++|||.|...++|.+-. -+|+++|.++.||+..+
T Consensus 39 wD~fy~~~~~rFfkdR~w----L~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk 114 (264)
T KOG2361|consen 39 WDTFYKIHENRFFKDRNW----LLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVK 114 (264)
T ss_pred hhhhhhhccccccchhHH----HHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHH
Confidence 344555566666653222 222222222222222 79999999999999998763 48999999999999999
Q ss_pred HHHHHcCCCcEEEEEccH
Q 003969 641 RNAEINGIKNCRFVCAKA 658 (783)
Q Consensus 641 ~Na~~ngl~nv~f~~gDa 658 (783)
.|...+. .++...+.|+
T Consensus 115 ~~~~~~e-~~~~afv~Dl 131 (264)
T KOG2361|consen 115 KSSGYDE-SRVEAFVWDL 131 (264)
T ss_pred hccccch-hhhcccceec
Confidence 9876443 3344444443
No 343
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=93.30 E-value=0.059 Score=56.78 Aligned_cols=64 Identities=23% Similarity=0.297 Sum_probs=51.4
Q ss_pred EEEeCCCcccCHHHHHHHhhhcc-ceeeEeec------------cCCc----cEEEEEeCCHHHHHHHHHHHcCCccCCc
Q 003969 168 KCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK------------KKGM----TVGFVKFESVEQLKNAVEELEGISIGNK 230 (783)
Q Consensus 168 i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~------------~r~~----gfgFVtF~s~Eea~kAIe~LnG~~~~Gr 230 (783)
||+.|||.+|+-..|+.+|+.|| |--+.+.. ++.. .=|+|+|.+.-.|+...+.|||..+.|+
T Consensus 77 vylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Iggk 156 (278)
T KOG3152|consen 77 VYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGGK 156 (278)
T ss_pred EEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccCCC
Confidence 99999999999999999999995 43333322 1111 2368999999999999999999999997
Q ss_pred e
Q 003969 231 T 231 (783)
Q Consensus 231 ~ 231 (783)
+
T Consensus 157 k 157 (278)
T KOG3152|consen 157 K 157 (278)
T ss_pred C
Confidence 5
No 344
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=93.23 E-value=0.17 Score=54.62 Aligned_cols=61 Identities=13% Similarity=-0.016 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh---CCEEEEEeCCHHHHHHHHHHHH
Q 003969 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAE 644 (783)
Q Consensus 584 ~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~---~~~VigVE~s~~AIe~Ak~Na~ 644 (783)
.+...++..+...+......+|||+|||+|+-..++... ...+++||.++.|++.++.-++
T Consensus 16 A~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~ 79 (274)
T PF09243_consen 16 AAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLR 79 (274)
T ss_pred HHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHh
Confidence 344444444544444445578999999999977766654 3689999999999999988654
No 345
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.16 E-value=0.18 Score=56.36 Aligned_cols=66 Identities=20% Similarity=0.280 Sum_probs=56.6
Q ss_pred hccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 596 WADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 596 ~l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
.+.+.+|..|+|.||-.|.-+..+|... .++.|+|.++.-++..+.-+...|..++..+.+|....
T Consensus 208 ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t 276 (413)
T KOG2360|consen 208 LLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNT 276 (413)
T ss_pred hcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCC
Confidence 3456678999999999999999988753 69999999999999999999999998888888886653
No 346
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=93.14 E-value=0.56 Score=51.19 Aligned_cols=79 Identities=18% Similarity=0.230 Sum_probs=68.9
Q ss_pred HHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHH
Q 003969 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMG 663 (783)
Q Consensus 587 e~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~ 663 (783)
.+|++.+++.+.+.++...+|.--|.|.-+..+.... ++++|+|.++.||+.|++....++ .++.+++++..++..
T Consensus 9 pVLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~ 87 (314)
T COG0275 9 PVLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAE 87 (314)
T ss_pred chHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHH
Confidence 4678888999999999999999999999999888875 689999999999999999887766 589999999888766
Q ss_pred HHH
Q 003969 664 SLL 666 (783)
Q Consensus 664 ~l~ 666 (783)
.+.
T Consensus 88 ~l~ 90 (314)
T COG0275 88 ALK 90 (314)
T ss_pred HHH
Confidence 554
No 347
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=92.99 E-value=0.22 Score=56.34 Aligned_cols=54 Identities=19% Similarity=0.271 Sum_probs=47.0
Q ss_pred CeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEc
Q 003969 603 TLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCA 656 (783)
Q Consensus 603 ~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~g 656 (783)
..|||+|.|||.+++..++.+ ..|+++|.-..|++.|++-...||. ++|.++.-
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInk 123 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINK 123 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeecc
Confidence 479999999999999888874 6999999999999999999999998 45666543
No 348
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=92.96 E-value=0.09 Score=58.62 Aligned_cols=74 Identities=19% Similarity=0.217 Sum_probs=59.4
Q ss_pred cEEEeCCCcccCHHHHHHHhhhccceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCc-cCCceeEEEecCCCC
Q 003969 167 SKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGIS-IGNKTLKVANVVPRS 241 (783)
Q Consensus 167 ~i~V~nLp~~~~~~~Lkklf~~~~v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~-~~Gr~L~V~~A~pr~ 241 (783)
++|++||....+..+|..+|....+....-..- ..||+||...++.-+.+||+.|+|+. ..|+.+.|-...|+.
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~-k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kk 77 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKK 77 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee-ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHH
Confidence 689999999999999999999764332221111 24999999999999999999999975 889999987666653
No 349
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=92.50 E-value=0.12 Score=59.83 Aligned_cols=72 Identities=22% Similarity=0.199 Sum_probs=57.1
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhcc--ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCcc---CCceeEEEecCC
Q 003969 166 LSKCLVHLPRKWHSDNLKKFLADHG--ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISI---GNKTLKVANVVP 239 (783)
Q Consensus 166 ~~i~V~nLp~~~~~~~Lkklf~~~~--v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~---~Gr~L~V~~A~p 239 (783)
.-|||.||-+-++..+||.||...| |....| .+=+...||++.+.++|-+-+.+|||..| .+|-|-|-.+..
T Consensus 445 nvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~~ 521 (718)
T KOG2416|consen 445 NVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVRA 521 (718)
T ss_pred ceEeeecccccchHHHHHHHHhhccCchHHHHH--HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecch
Confidence 4599999999999999999999773 333332 23345699999999999999999999999 457787765543
No 350
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.47 E-value=0.25 Score=54.40 Aligned_cols=52 Identities=19% Similarity=0.249 Sum_probs=42.0
Q ss_pred EEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHH
Q 003969 605 LFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662 (783)
Q Consensus 605 VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l 662 (783)
|+|||||.|.+++-|.+.+ .-|.++|+++.|++.-+.|.. + .++.+|+.++.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~ 53 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKIS 53 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhh
Confidence 6899999999999998775 456789999999999988842 2 45678888764
No 351
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=92.19 E-value=0.5 Score=50.32 Aligned_cols=70 Identities=13% Similarity=0.195 Sum_probs=51.8
Q ss_pred HHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccH
Q 003969 586 AEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658 (783)
Q Consensus 586 ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDa 658 (783)
.+.+|..+...+. ...+|+|||||.=-+++++.... ..++|+|++..+++....-....+. +.++...|+
T Consensus 92 Ld~fY~~if~~~~--~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-~~~~~v~Dl 163 (251)
T PF07091_consen 92 LDEFYDEIFGRIP--PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-PHDARVRDL 163 (251)
T ss_dssp HHHHHHHHCCCS-----SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-T
T ss_pred HHHHHHHHHhcCC--CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-CcceeEeee
Confidence 4667887877654 35789999999999999887663 5999999999999999998888886 355555554
No 352
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=92.16 E-value=0.22 Score=57.53 Aligned_cols=68 Identities=22% Similarity=0.223 Sum_probs=49.2
Q ss_pred EEEeCCCcccCHH---H----HHHHhhhcc-ceeeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCccCC-ceeEEE
Q 003969 168 KCLVHLPRKWHSD---N----LKKFLADHG-ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGN-KTLKVA 235 (783)
Q Consensus 168 i~V~nLp~~~~~~---~----Lkklf~~~~-v~~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~G-r~L~V~ 235 (783)
|.|-|+|- ++.. - |.|+|+++| +.-..... +..+||.|+.|.+..+|++|++.|||+.+.. -++.|+
T Consensus 61 Vvv~g~Pv-V~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~ 139 (698)
T KOG2314|consen 61 VVVDGAPV-VGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVR 139 (698)
T ss_pred EEECCCcc-cChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEEee
Confidence 77888874 3332 3 345666665 33333332 6789999999999999999999999999865 478776
Q ss_pred e
Q 003969 236 N 236 (783)
Q Consensus 236 ~ 236 (783)
.
T Consensus 140 ~ 140 (698)
T KOG2314|consen 140 L 140 (698)
T ss_pred h
Confidence 3
No 353
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=91.97 E-value=0.83 Score=50.89 Aligned_cols=65 Identities=12% Similarity=0.094 Sum_probs=53.7
Q ss_pred CCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHH---cC--C--CcEEEEEccHHHHHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEI---NG--I--KNCRFVCAKAEDVMGSL 665 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~---ng--l--~nv~f~~gDaed~l~~l 665 (783)
.-.+||=||.|-|.-...|.+. ..+|+-||++|.||+.+++|... |+ + .+++++..|+..+++.-
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a 362 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA 362 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh
Confidence 3468999999999999999887 47999999999999999987542 32 2 35999999999998753
No 354
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=91.66 E-value=0.54 Score=41.99 Aligned_cols=55 Identities=31% Similarity=0.508 Sum_probs=38.5
Q ss_pred EEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 605 LFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 605 VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
++|++||+|... .++... ..++|+|+++.++..++......+...+.++.++...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALG 109 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEecccc
Confidence 999999999976 444433 3899999999999996655433121115677776654
No 355
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=91.62 E-value=0.16 Score=55.37 Aligned_cols=78 Identities=21% Similarity=0.265 Sum_probs=65.2
Q ss_pred cccEE-EeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 003969 165 ELSKC-LVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 165 ~~~i~-V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
...++ |+||+..++.++|++.|...+ |..+++.. +..+|||||.|.+-.....|+.. .+..+.|+.+.+....
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 44566 999999999999998888773 55555554 56789999999999999999988 8999999999999888
Q ss_pred CCCcc
Q 003969 239 PRSFD 243 (783)
Q Consensus 239 pr~~~ 243 (783)
|+++.
T Consensus 263 ~~~~~ 267 (285)
T KOG4210|consen 263 PRPKS 267 (285)
T ss_pred CCccc
Confidence 87654
No 356
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=91.54 E-value=0.22 Score=51.27 Aligned_cols=67 Identities=15% Similarity=0.307 Sum_probs=52.0
Q ss_pred CCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHc-------CCCcEEEEEccHHHHHHHHHh
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEIN-------GIKNCRFVCAKAEDVMGSLLK 667 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~n-------gl~nv~f~~gDaed~l~~l~~ 667 (783)
+.-.+.|||||-|.+.+.|+-.+ .-++|.||--..-+..+..++.. .+.|+.++..++..+++.+..
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~ 135 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFE 135 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhh
Confidence 34579999999999999999886 57899998666555555554443 368899999999998887643
No 357
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=91.44 E-value=0.22 Score=58.61 Aligned_cols=67 Identities=15% Similarity=0.204 Sum_probs=53.3
Q ss_pred cEEEeCCCcccCHHHHHHHhhhccceeeEe-eccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEE
Q 003969 167 SKCLVHLPRKWHSDNLKKFLADHGILYKSA-KKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKV 234 (783)
Q Consensus 167 ~i~V~nLp~~~~~~~Lkklf~~~~v~~~~i-~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V 234 (783)
-|.++||||-.+..|+|.||+-+.|..--| ++|.-+|=|||.|.++|+|.-||-+ ++-.++|-+++.
T Consensus 4 IIRLqnLP~tAga~DIR~FFSGL~IPdGgVHIIGGe~GeaFI~FsTDeDARlaM~k-dr~~i~g~~VrL 71 (944)
T KOG4307|consen 4 IIRLQNLPMTAGASDIRTFFSGLKIPDGGVHIIGGEEGEAFIGFSTDEDARLAMTK-DRLMIHGAEVRL 71 (944)
T ss_pred EEEecCCcccccchHHHHhhcccccCCCceEEecccccceEEEecccchhhhhhhh-cccceecceEEE
Confidence 478999999999999999999885554333 3477789999999999999999877 455567765443
No 358
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=91.42 E-value=0.28 Score=53.93 Aligned_cols=80 Identities=16% Similarity=0.177 Sum_probs=59.5
Q ss_pred HHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHH
Q 003969 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664 (783)
Q Consensus 587 e~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~~ 664 (783)
.+|.+.+++++.+.++..++|.--|.|.-+..+.+. ..+|+|+|.+++|++.|++++... -.++.+++++..++...
T Consensus 6 PVll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-~~r~~~~~~~F~~l~~~ 84 (310)
T PF01795_consen 6 PVLLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-DDRFIFIHGNFSNLDEY 84 (310)
T ss_dssp -TTHHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-CTTEEEEES-GGGHHHH
T ss_pred cccHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-cceEEEEeccHHHHHHH
Confidence 357788888888888999999999999999999876 379999999999999998876533 35799999998777655
Q ss_pred HHh
Q 003969 665 LLK 667 (783)
Q Consensus 665 l~~ 667 (783)
+..
T Consensus 85 l~~ 87 (310)
T PF01795_consen 85 LKE 87 (310)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 359
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=91.35 E-value=0.6 Score=48.58 Aligned_cols=74 Identities=20% Similarity=0.277 Sum_probs=60.1
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhc-cceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccC-CceeEEEec
Q 003969 163 DVELSKCLVHLPRKWHSDNLKKFLADH-GILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIG-NKTLKVANV 237 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~~~~~Lkklf~~~-~v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~-Gr~L~V~~A 237 (783)
.+..-+++.|||...+.+.|..+|.++ |....+..-.+ ++.|||+|.++-++..|...|.|..+- .-+++|..|
T Consensus 144 ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 144 PPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred CCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-CceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 334458999999999999999999999 66655544433 489999999999999999999999886 556776655
No 360
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=90.85 E-value=0.093 Score=60.42 Aligned_cols=34 Identities=41% Similarity=0.853 Sum_probs=22.4
Q ss_pred cccccccccccccccCCCCCCCccccCcCccCCCC
Q 003969 80 LHKTSLCSYFRKVGTCCHGSTCRYAHGEEELRIRP 114 (783)
Q Consensus 80 ~~kt~~c~~~~~~~~c~~g~~c~~ahg~~elr~~~ 114 (783)
.|-..-|.-|++ |.|..||.|.||||.=|-.--|
T Consensus 233 hYs~tpCPefrk-G~C~rGD~CEyaHgvfEcwLHP 266 (528)
T KOG1595|consen 233 HYSSTPCPEFRK-GSCERGDSCEYAHGVFECWLHP 266 (528)
T ss_pred cccCccCccccc-CCCCCCCccccccceehhhcCH
Confidence 366667777755 7777777777777766654433
No 361
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=90.82 E-value=0.46 Score=52.15 Aligned_cols=61 Identities=21% Similarity=0.300 Sum_probs=48.8
Q ss_pred CCCeEEEecCCcCHHHHHHhhh-CCEEEEEeCCHHHHHHHHHHHHHc------CCCcEEEEEccHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEIN------GIKNCRFVCAKAEDV 661 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~-~~~VigVE~s~~AIe~Ak~Na~~n------gl~nv~f~~gDaed~ 661 (783)
++..++|||||-|.-.+-.-+. ...++|+|+..-+|++|++..+.. .+-.+.|+++|....
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~ 184 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKE 184 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchh
Confidence 5678999999999988866655 589999999999999999876532 223489999997653
No 362
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=90.81 E-value=0.43 Score=50.39 Aligned_cols=54 Identities=15% Similarity=0.117 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh-CCEEEEEeCCHHHHHH
Q 003969 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSD 638 (783)
Q Consensus 585 ~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~-~~~VigVE~s~~AIe~ 638 (783)
++.+|...+-.+--..++..+||+|+-||.|+.++.++ +++|+|||.....+.+
T Consensus 63 G~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~ 117 (245)
T COG1189 63 GGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHW 117 (245)
T ss_pred HHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCH
Confidence 45566655555544457889999999999999999998 6899999998755544
No 363
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=90.75 E-value=0.44 Score=52.83 Aligned_cols=58 Identities=17% Similarity=0.244 Sum_probs=46.3
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhc--------cceeeEeeccCCccEEEEEeCCHHHHHHHHHHHc
Q 003969 166 LSKCLVHLPRKWHSDNLKKFLADH--------GILYKSAKKKKGMTVGFVKFESVEQLKNAVEELE 223 (783)
Q Consensus 166 ~~i~V~nLp~~~~~~~Lkklf~~~--------~v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~Ln 223 (783)
.-|.+++||++.++.|+..||... +|-+++-.-+|.-|=|||.|..+|+|+.|+.+-.
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khr 227 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHR 227 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHH
Confidence 348899999999999999999732 3444443337778999999999999999988743
No 364
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=90.73 E-value=0.29 Score=42.36 Aligned_cols=61 Identities=18% Similarity=0.250 Sum_probs=37.1
Q ss_pred ccCHHHHHHHhhhc-cceeeEeec-cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 176 KWHSDNLKKFLADH-GILYKSAKK-KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 176 ~~~~~~Lkklf~~~-~v~~~~i~~-~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
.++..+|-.+|... ++....|-. .-...|.||+.. .+.++++++.|++..++|++|+|..|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~~S~vev~-~~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDNFSFVEVP-EEVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS-EEEEE--TT-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeeeEEEEEEC-HHHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 46788899998877 676554444 223579999996 46899999999999999999999865
No 365
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=90.21 E-value=0.58 Score=48.91 Aligned_cols=60 Identities=12% Similarity=0.145 Sum_probs=53.1
Q ss_pred CCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAED 660 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gDaed 660 (783)
.+.+++|+||=-|.++..|-+. +..++++|+++..++.|.+|...+++ ..++..++|...
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~ 78 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA 78 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc
Confidence 4567999999999999999987 47999999999999999999999998 458888888744
No 366
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=89.80 E-value=0.09 Score=56.23 Aligned_cols=34 Identities=32% Similarity=0.717 Sum_probs=28.2
Q ss_pred CCcccccccccccccccCCCCCCCccccCcCccCC
Q 003969 78 HPLHKTSLCSYFRKVGTCCHGSTCRYAHGEEELRI 112 (783)
Q Consensus 78 ~~~~kt~~c~~~~~~~~c~~g~~c~~ahg~~elr~ 112 (783)
..--|+-+|.+| +.|.|.-|++|.|+|+...-|.
T Consensus 87 gvDPKSvvCafF-k~g~C~KG~kCKFsHdl~~~~k 120 (343)
T KOG1763|consen 87 GVDPKSVVCAFF-KQGTCTKGDKCKFSHDLAVERK 120 (343)
T ss_pred CCCchHHHHHHH-hccCCCCCCcccccchHHHhhh
Confidence 344589999999 5599999999999999876554
No 367
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=89.69 E-value=1 Score=48.46 Aligned_cols=59 Identities=24% Similarity=0.192 Sum_probs=48.4
Q ss_pred HHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHH
Q 003969 586 AEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEI 645 (783)
Q Consensus 586 ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ 645 (783)
...|+...+.. ....+..|||.++|+|+.+++......+++|+|++++-++.+.+-...
T Consensus 208 P~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~ 266 (302)
T COG0863 208 PLALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQE 266 (302)
T ss_pred hHHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHh
Confidence 34445555554 445789999999999999999999999999999999999999987664
No 368
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=89.34 E-value=0.76 Score=53.80 Aligned_cols=74 Identities=22% Similarity=0.356 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC------CEEEEEeCCHHHHHHHHHHHHHcCCC-cEEE
Q 003969 581 VNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV------GMVIGIEMNASAVSDAHRNAEINGIK-NCRF 653 (783)
Q Consensus 581 vN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~------~~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f 653 (783)
+.+...+.|. +.+.+.+..+|+|.+||+|.+-+..++.. ...+|.|+++.....|+.|+-.+|+. ++..
T Consensus 170 TP~~v~~liv----~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i 245 (489)
T COG0286 170 TPREVSELIV----ELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANI 245 (489)
T ss_pred ChHHHHHHHH----HHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccc
Confidence 3444444444 34444556799999999999988777654 35899999999999999999999996 3455
Q ss_pred EEccH
Q 003969 654 VCAKA 658 (783)
Q Consensus 654 ~~gDa 658 (783)
..+|.
T Consensus 246 ~~~dt 250 (489)
T COG0286 246 RHGDT 250 (489)
T ss_pred ccccc
Confidence 55543
No 369
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=89.29 E-value=0.16 Score=51.42 Aligned_cols=68 Identities=10% Similarity=0.160 Sum_probs=44.3
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhh-cc--ceeeEee--c-----cC-CccEEEEEeCCHHHHHHHHHHHcCCccCC
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLAD-HG--ILYKSAK--K-----KK-GMTVGFVKFESVEQLKNAVEELEGISIGN 229 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~-~~--v~~~~i~--~-----~r-~~gfgFVtF~s~Eea~kAIe~LnG~~~~G 229 (783)
+..+.||.|++||..+++++|.+.+.. ++ +....+. . +. .-.-|||.|.+.+++...++.++|+.|-.
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 355679999999999999999997776 31 1111211 1 11 12678999999999999999999999854
No 370
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=89.17 E-value=1.2 Score=49.89 Aligned_cols=72 Identities=19% Similarity=0.181 Sum_probs=59.8
Q ss_pred ccEEEeCC-CcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 003969 166 LSKCLVHL-PRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 166 ~~i~V~nL-p~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
.-|-|-|| +..++.+.|=.+|.-|| |.-++|...+. .-|.|.|.+.-+|+-|++.|+|..|-||+|+|...+
T Consensus 298 ~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 298 VVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred eEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 34667777 66789999999999995 66556554433 789999999999999999999999999999998664
No 371
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=89.11 E-value=0.5 Score=50.83 Aligned_cols=64 Identities=13% Similarity=0.083 Sum_probs=50.9
Q ss_pred CCCeEEEecCCcCHHHHHHhh--hCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAH--RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~--~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~~l 665 (783)
.|..|+=+| ---.+|++++. ..++|..||+++..|....+-++..|+.|++.+.-|+.+.++.-
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~ 217 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPED 217 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHH
Confidence 355677666 44455555554 46899999999999999999999999999999999988877653
No 372
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=88.95 E-value=2.2 Score=45.45 Aligned_cols=58 Identities=12% Similarity=0.095 Sum_probs=50.8
Q ss_pred EEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHH
Q 003969 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665 (783)
Q Consensus 606 LDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~~l 665 (783)
|..|||+=.++..|.+...++.++|+.++=....+.|.. +-.++++.++|....+...
T Consensus 93 l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~--~d~~vrv~~~DG~~~l~a~ 150 (279)
T COG2961 93 LRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFA--GDRRVRVLRGDGFLALKAH 150 (279)
T ss_pred cccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhC--CCcceEEEecCcHHHHhhh
Confidence 899999999999998888999999999999988888865 5568999999998876643
No 373
>PRK00536 speE spermidine synthase; Provisional
Probab=88.89 E-value=5.1 Score=43.28 Aligned_cols=59 Identities=7% Similarity=-0.282 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhhhccC---CCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHH
Q 003969 584 LAAEKLYSLGGDWADL---GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRN 642 (783)
Q Consensus 584 ~~ae~L~~~i~~~l~~---~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~N 642 (783)
+.-+.+|..++-...+ ....+||=+|.|-|.....+.++..+|+-||+++..|+.+++-
T Consensus 52 e~dEfiYHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~ 113 (262)
T PRK00536 52 KNFLHIESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISF 113 (262)
T ss_pred cchhhhHHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHH
Confidence 3344455555443222 3347999999999999999999877999999999999999984
No 374
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=88.79 E-value=3.3 Score=43.62 Aligned_cols=64 Identities=17% Similarity=0.206 Sum_probs=47.6
Q ss_pred hhccCCCCCeEEEecCCcCHHHHHHhhhCC---EEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVG---MVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 595 ~~l~~~~g~~VLDLgCGtGti~l~LA~~~~---~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
+.+.+.+|.+||-||+.+||.--.++..+. .|+|||.++.+.++.-.-++. -.||--+-+||..
T Consensus 67 ~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~--R~NIiPIl~DAr~ 133 (229)
T PF01269_consen 67 ENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK--RPNIIPILEDARH 133 (229)
T ss_dssp S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH--STTEEEEES-TTS
T ss_pred cccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc--CCceeeeeccCCC
Confidence 445677899999999999999999998864 999999999888887755543 2477778888763
No 375
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=88.70 E-value=0.11 Score=54.06 Aligned_cols=34 Identities=41% Similarity=0.789 Sum_probs=29.7
Q ss_pred CcccccccccccccccCCCCCCCccccCcCccCCC
Q 003969 79 PLHKTSLCSYFRKVGTCCHGSTCRYAHGEEELRIR 113 (783)
Q Consensus 79 ~~~kt~~c~~~~~~~~c~~g~~c~~ahg~~elr~~ 113 (783)
.--||-.|-.| ..+.|.-|+.|.|+||-+|.|..
T Consensus 81 vdpK~~vcalF-~~~~c~kg~~ckF~h~~ee~r~~ 114 (299)
T COG5252 81 VDPKTVVCALF-LNKTCAKGDACKFAHGKEEARKT 114 (299)
T ss_pred cCchhHHHHHh-ccCccccCchhhhhcchHHHhhh
Confidence 44699999999 66899999999999999988764
No 376
>PRK10458 DNA cytosine methylase; Provisional
Probab=88.27 E-value=1.2 Score=51.74 Aligned_cols=58 Identities=19% Similarity=0.082 Sum_probs=44.4
Q ss_pred CCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 602 DTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 602 g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
.-+++|||||.|.+++-|-..+ .-|.++|+++.|++.-+.|.. ...+...+.+|+.++
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~--~~p~~~~~~~DI~~i 146 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWY--CDPATHRFNEDIRDI 146 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcC--CCCccceeccChhhC
Confidence 4589999999999999987765 577899999999998888742 112345566777665
No 377
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=88.07 E-value=0.56 Score=49.39 Aligned_cols=56 Identities=16% Similarity=0.053 Sum_probs=39.6
Q ss_pred HHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHH
Q 003969 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNA 643 (783)
Q Consensus 588 ~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na 643 (783)
.|..+|.+.++.....+++|++||+|.+++.+...+.+|+.-|+++..+...+.-+
T Consensus 7 ~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~~~l 62 (260)
T PF02086_consen 7 KLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWKAVL 62 (260)
T ss_dssp GGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHHHHH
Confidence 35666777665435689999999999999999888899999999999888877433
No 378
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=87.97 E-value=1.1 Score=46.92 Aligned_cols=64 Identities=16% Similarity=0.111 Sum_probs=43.5
Q ss_pred CCCeEEEecCCcCHHHHHH-hhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTL-AHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~L-A~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~~ 664 (783)
...++||.|||+|.++-.| ...+.+|-.||.++..++.|++.....+-.-..+++.-+.++.+.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~ 119 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPE 119 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCC
Confidence 3468999999999999855 566899999999999999999765432223378888888877654
No 379
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=87.53 E-value=1.5 Score=45.11 Aligned_cols=63 Identities=21% Similarity=0.350 Sum_probs=40.8
Q ss_pred cccCCHHHHHHHHHHHh-hhcc---CCCCCeEEEecCCcC----HHHHHHhhh----CC---EEEEEeCCHHHHHHHHH
Q 003969 578 FFQVNTLAAEKLYSLGG-DWAD---LGPDTLLFDVCCGTG----TIGLTLAHR----VG---MVIGIEMNASAVSDAHR 641 (783)
Q Consensus 578 FfQvN~~~ae~L~~~i~-~~l~---~~~g~~VLDLgCGtG----ti~l~LA~~----~~---~VigVE~s~~AIe~Ak~ 641 (783)
||. ++.+.+.|...++ .++. ....-+||..||++| ++++.|... .. +|+|.|+++.+++.|++
T Consensus 5 FFR-d~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~ 82 (196)
T PF01739_consen 5 FFR-DPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA 82 (196)
T ss_dssp TTT-TTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred ccC-CHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence 443 5566777777777 3332 123468999999999 555666552 22 89999999999999985
No 380
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=87.45 E-value=1 Score=46.80 Aligned_cols=71 Identities=21% Similarity=0.357 Sum_probs=50.7
Q ss_pred HHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCC---EEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH-
Q 003969 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG---MVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED- 660 (783)
Q Consensus 585 ~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~---~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed- 660 (783)
++-+|.+..-++--+.++..|+||||-.|..+..+++..+ +|+|||+.|-. -+.+|.++.+|+.+
T Consensus 29 Aa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~~~~V~~iq~d~~~~ 97 (205)
T COG0293 29 AAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------PIPGVIFLQGDITDE 97 (205)
T ss_pred HHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------cCCCceEEeeeccCc
Confidence 3334444444443345689999999999999999999864 49999998752 34679999999854
Q ss_pred -HHHHHH
Q 003969 661 -VMGSLL 666 (783)
Q Consensus 661 -~l~~l~ 666 (783)
.+..+.
T Consensus 98 ~~~~~l~ 104 (205)
T COG0293 98 DTLEKLL 104 (205)
T ss_pred cHHHHHH
Confidence 344443
No 381
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=87.05 E-value=0.94 Score=50.16 Aligned_cols=34 Identities=21% Similarity=0.519 Sum_probs=30.0
Q ss_pred CcccccccccccccccCCCCCCCccccCcCccCCCC
Q 003969 79 PLHKTSLCSYFRKVGTCCHGSTCRYAHGEEELRIRP 114 (783)
Q Consensus 79 ~~~kt~~c~~~~~~~~c~~g~~c~~ahg~~elr~~~ 114 (783)
..+++.+|++|.+ |.|..|+.|-|.|-. +|...|
T Consensus 73 ~~~~~~vcK~~l~-glC~kgD~C~Flhe~-~~~k~r 106 (325)
T KOG1040|consen 73 DSRGKVVCKHWLR-GLCKKGDQCEFLHEY-DLTKMR 106 (325)
T ss_pred ccCCceeehhhhh-hhhhccCcCcchhhh-hhcccc
Confidence 4899999999977 899999999999988 776655
No 382
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=87.01 E-value=0.32 Score=56.14 Aligned_cols=35 Identities=34% Similarity=0.544 Sum_probs=30.8
Q ss_pred CcccccccccccccccCCCCCCCccccCcCccCCCCCCC
Q 003969 79 PLHKTSLCSYFRKVGTCCHGSTCRYAHGEEELRIRPDNT 117 (783)
Q Consensus 79 ~~~kt~~c~~~~~~~~c~~g~~c~~ahg~~elr~~~~~~ 117 (783)
..|||++|+-- |.|+. --|.|||..+|||..+..+
T Consensus 267 a~YRT~~CkDg---~~C~R-rvCfFAH~~eqLR~l~~s~ 301 (528)
T KOG1595|consen 267 ARYRTRKCKDG---GYCPR-RVCFFAHSPEQLRPLPPST 301 (528)
T ss_pred HHhccccccCC---CCCcc-ceEeeecChHHhcccCCCC
Confidence 56999999876 88999 9999999999999998754
No 383
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=86.74 E-value=1.9 Score=46.10 Aligned_cols=59 Identities=14% Similarity=0.164 Sum_probs=42.5
Q ss_pred EEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHH
Q 003969 606 FDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666 (783)
Q Consensus 606 LDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~~l~ 666 (783)
|..|.|+=.|+..+.+...+.+.+|+.+..++..+.|+.. -.+++++..|..+.+..+.
T Consensus 62 l~~YPGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~--~~~v~v~~~DG~~~l~all 120 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRR--DRRVRVHHRDGYEGLKALL 120 (245)
T ss_dssp --EEE-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--T--TS-EEEE-S-HHHHHHHH-
T ss_pred cCcCCCCHHHHHHhCCccceEEEEecCchHHHHHHHHhcc--CCccEEEeCchhhhhhhhC
Confidence 8899999999999999999999999999999999988653 3579999999999887664
No 384
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=86.70 E-value=2 Score=47.01 Aligned_cols=68 Identities=19% Similarity=0.280 Sum_probs=46.6
Q ss_pred EEECCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcC----HHHHHHhhhC------CEEEEEeCCHHHHHHHH
Q 003969 571 FCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTG----TIGLTLAHRV------GMVIGIEMNASAVSDAH 640 (783)
Q Consensus 571 f~isp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtG----ti~l~LA~~~------~~VigVE~s~~AIe~Ak 640 (783)
+.+..+.||. ++.+.+.|...+... ...-+||..||.|| ++++.|.... -+|+|+|++..+++.|+
T Consensus 89 ltineT~FFR-d~~~f~~L~~~~~~~---~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar 164 (287)
T PRK10611 89 LTTNLTAFFR-EAHHFPILAEHARRR---SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKAR 164 (287)
T ss_pred hhCCCCCccC-CcHHHHHHHHHHHhc---CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHH
Confidence 3445566776 444555555554321 12369999999999 5666665532 37999999999999999
Q ss_pred HH
Q 003969 641 RN 642 (783)
Q Consensus 641 ~N 642 (783)
+-
T Consensus 165 ~G 166 (287)
T PRK10611 165 SG 166 (287)
T ss_pred hC
Confidence 64
No 385
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=86.20 E-value=0.72 Score=41.85 Aligned_cols=60 Identities=18% Similarity=0.265 Sum_probs=22.4
Q ss_pred EEecCCcCHHHHHHhhhC-----CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHHHHHHHH
Q 003969 606 FDVCCGTGTIGLTLAHRV-----GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAEDVMGSLL 666 (783)
Q Consensus 606 LDLgCGtGti~l~LA~~~-----~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gDaed~l~~l~ 666 (783)
|++|+..|..++.+++.. .++++||..+. .+.++++++..++ .+++++.++..+.++.+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~ 66 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP 66 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC
Confidence 688999999988887653 27999999996 4455555555566 469999999999988765
No 386
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=86.01 E-value=1.5 Score=49.27 Aligned_cols=72 Identities=24% Similarity=0.330 Sum_probs=60.1
Q ss_pred cEEEeCCCcccCHHHHHHHhhhccceeeEeec-cCCccEEEEEeCCHHHHHHHHHHHcCCccCCc-eeEEEecC
Q 003969 167 SKCLVHLPRKWHSDNLKKFLADHGILYKSAKK-KKGMTVGFVKFESVEQLKNAVEELEGISIGNK-TLKVANVV 238 (783)
Q Consensus 167 ~i~V~nLp~~~~~~~Lkklf~~~~v~~~~i~~-~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr-~L~V~~A~ 238 (783)
.+++.|+|.++++++|+.+|.+.|.....-+- .+.+.++.+.|.+.|+|-.|.-.|+.+.+.+. -|+|+..+
T Consensus 416 tlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 416 TLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred heeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeec
Confidence 58899999999999999999998755333222 56678999999999999999999999998876 78987653
No 387
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=84.84 E-value=2.1 Score=49.73 Aligned_cols=58 Identities=17% Similarity=0.239 Sum_probs=46.0
Q ss_pred HHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 179 SDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 179 ~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
.+++++-+.++| |.-+.+- +.+-||-||-|.|.+.|..|+.+|||-=|.||.|+++-.
T Consensus 467 ~edV~Eec~k~g~v~hi~vd-~ns~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~ 525 (549)
T KOG0147|consen 467 REDVIEECGKHGKVCHIFVD-KNSAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYL 525 (549)
T ss_pred HHHHHHHHHhcCCeeEEEEc-cCCCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEe
Confidence 457777778885 4333332 445599999999999999999999999999999998644
No 388
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=84.61 E-value=1.8 Score=50.36 Aligned_cols=35 Identities=31% Similarity=0.443 Sum_probs=31.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 202 MTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 202 ~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
-|--||.|.+.|+.++|++.|+|-.|.||++...-
T Consensus 454 ~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsY 488 (500)
T KOG0120|consen 454 TGKVFVEFADTEDSQRAMEELTGRKFANRTVVASY 488 (500)
T ss_pred cccEEEEecChHHHHHHHHHccCceeCCcEEEEEe
Confidence 46669999999999999999999999999987653
No 389
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=84.48 E-value=1.4 Score=48.80 Aligned_cols=56 Identities=18% Similarity=0.290 Sum_probs=46.2
Q ss_pred CeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHH
Q 003969 603 TLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMG 663 (783)
Q Consensus 603 ~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~ 663 (783)
.+++|||||.|.+.+-+...+ .-+.++|+++.|++.-+.|... ..++.+|+..+..
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~ 60 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDG 60 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcCh
Confidence 579999999999999888875 7889999999999999888532 5677777776654
No 390
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=84.43 E-value=12 Score=39.16 Aligned_cols=67 Identities=25% Similarity=0.359 Sum_probs=49.3
Q ss_pred CCCCeEEEecCCcC----HHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEEcc-HHHHHHHHH
Q 003969 600 GPDTLLFDVCCGTG----TIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIKN-CRFVCAK-AEDVMGSLL 666 (783)
Q Consensus 600 ~~g~~VLDLgCGtG----ti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~ngl~n-v~f~~gD-aed~l~~l~ 666 (783)
.....+++.+|+.| +++|..|.+ ++++++|-.+.......++.+...++.+ ++|+.|+ .+++++.+.
T Consensus 40 ~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~ 114 (218)
T PF07279_consen 40 WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLK 114 (218)
T ss_pred ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhcc
Confidence 34568999977654 444444433 5899999999999888888888778865 6999998 567776553
No 391
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=84.18 E-value=3.6 Score=45.82 Aligned_cols=75 Identities=25% Similarity=0.269 Sum_probs=58.9
Q ss_pred cEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCcc-CC-ceeEEEecCCCCc
Q 003969 167 SKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISI-GN-KTLKVANVVPRSF 242 (783)
Q Consensus 167 ~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~-~G-r~L~V~~A~pr~~ 242 (783)
=+-|-|--+-++-+-|-+++..+| |.-..|.+ +.-==|.|+|++.+.|++|-..|||.++ -| .+|+|.-|+|-..
T Consensus 124 l~TIlNp~YpItvDVly~Icnp~GkVlRIvIfk-kngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 124 LFTILNPQYPITVDVLYTICNPQGKVLRIVIFK-KNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred EEEeecCccccchhhhhhhcCCCCceEEEEEEe-ccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCccee
Confidence 355677777799999999999996 44344333 3434689999999999999999999995 56 4899999988644
No 392
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=84.09 E-value=2.4 Score=45.81 Aligned_cols=70 Identities=17% Similarity=0.270 Sum_probs=50.3
Q ss_pred EEECCCccccCCHHHHHHHHHHHhhhc-cCC--CCCeEEEecCCcC----HHHHHHhhhC-------CEEEEEeCCHHHH
Q 003969 571 FCISPTAFFQVNTLAAEKLYSLGGDWA-DLG--PDTLLFDVCCGTG----TIGLTLAHRV-------GMVIGIEMNASAV 636 (783)
Q Consensus 571 f~isp~sFfQvN~~~ae~L~~~i~~~l-~~~--~g~~VLDLgCGtG----ti~l~LA~~~-------~~VigVE~s~~AI 636 (783)
+.+.-+.||. ++...+.|-+.++..+ ... ..-+||-++|+|| ++++.|.+.. -+|+|.|++..++
T Consensus 64 ltin~T~FFR-~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L 142 (268)
T COG1352 64 LTINVTEFFR-DPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVL 142 (268)
T ss_pred hhhccchhcc-CcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHH
Confidence 4445566776 5666777777777533 211 2458999999999 5666666553 3799999999999
Q ss_pred HHHHH
Q 003969 637 SDAHR 641 (783)
Q Consensus 637 e~Ak~ 641 (783)
+.|+.
T Consensus 143 ~~A~~ 147 (268)
T COG1352 143 EKARA 147 (268)
T ss_pred HHHhc
Confidence 99985
No 393
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=83.97 E-value=1.4 Score=51.12 Aligned_cols=66 Identities=15% Similarity=0.172 Sum_probs=49.7
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhc-c-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCC
Q 003969 164 VELSKCLVHLPRKWHSDNLKKFLADH-G-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGN 229 (783)
Q Consensus 164 ~~~~i~V~nLp~~~~~~~Lkklf~~~-~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~G 229 (783)
..-.+-|+|+|..++..-|.+..++. + -.+..+.+ +...|||||+|-+++.+-.+.++.||+.|..
T Consensus 387 ~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~ 458 (549)
T KOG4660|consen 387 PRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEK 458 (549)
T ss_pred chhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhh
Confidence 34457788999998888877775544 1 23333333 4567999999999999999999999999964
No 394
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=83.57 E-value=5.1 Score=43.55 Aligned_cols=60 Identities=23% Similarity=0.243 Sum_probs=39.2
Q ss_pred CeEEEecCCcCHHH-HHHhhh---CCEEEEEeCCHHHHHHHHHHHH-HcCC-CcEEEEEccHHHHH
Q 003969 603 TLLFDVCCGTGTIG-LTLAHR---VGMVIGIEMNASAVSDAHRNAE-INGI-KNCRFVCAKAEDVM 662 (783)
Q Consensus 603 ~~VLDLgCGtGti~-l~LA~~---~~~VigVE~s~~AIe~Ak~Na~-~ngl-~nv~f~~gDaed~l 662 (783)
.+|+=||||.=-+| +.|++. ...|+++|++++|++.|++-.. ..|+ ..++|+++|+.+..
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~ 187 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVT 187 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccc
Confidence 49999999966555 567754 2579999999999999998766 5566 45999999987654
No 395
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=83.25 E-value=3 Score=42.41 Aligned_cols=63 Identities=22% Similarity=0.386 Sum_probs=55.2
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCC
Q 003969 164 VELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN 229 (783)
Q Consensus 164 ~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~G 229 (783)
++++|.|.+||..-+-.+||+-+.+-| |-+..+.+. |.|.|.|-..|+++=|+.+|+...+.-
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD---g~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD---GVGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc---cceeeeeeehhhHHHHHHhhccccccC
Confidence 378999999999999999999999884 777776553 589999999999999999999988764
No 396
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=82.42 E-value=0.41 Score=52.28 Aligned_cols=26 Identities=31% Similarity=0.842 Sum_probs=22.1
Q ss_pred cccccccccccccCCCCCC-CccccCcC
Q 003969 82 KTSLCSYFRKVGTCCHGST-CRYAHGEE 108 (783)
Q Consensus 82 kt~~c~~~~~~~~c~~g~~-c~~ahg~~ 108 (783)
.-.+|+-|.+ |.|..|++ |+|||=..
T Consensus 36 ~~eVCReF~r-n~C~R~d~~CkfaHP~~ 62 (331)
T KOG2494|consen 36 TLEVCREFLR-NTCSRGDRECKFAHPPK 62 (331)
T ss_pred HHHHHHHHHh-ccccCCCccccccCCCC
Confidence 3479999988 69999999 99999543
No 397
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=82.34 E-value=2.4 Score=49.29 Aligned_cols=66 Identities=15% Similarity=0.153 Sum_probs=47.8
Q ss_pred EEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcC--CccCCceeEE
Q 003969 168 KCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEG--ISIGNKTLKV 234 (783)
Q Consensus 168 i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG--~~~~Gr~L~V 234 (783)
|.|+-||...-.+++|-||..-. -.+....-.-.-+| ||||++++||++|.+.|.- ++|.||.|.+
T Consensus 178 vilREIpettp~e~Vk~lf~~encPk~iscefa~N~nW-yITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 178 VILREIPETTPIEVVKALFKGENCPKVISCEFAHNDNW-YITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred EEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCce-EEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 77899999999999999998531 11111111222233 9999999999999999875 5588887754
No 398
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=81.97 E-value=8.8 Score=40.36 Aligned_cols=77 Identities=13% Similarity=0.104 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 584 ~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~-~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
..-..|.+.|...++.....-|+++|-|.|.|+..+... ..+...||.++..+.-.+.-++... ....++.+|+..+
T Consensus 33 LMD~~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~-~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 33 LMDLRLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP-GKLRIHHGDVLRF 110 (326)
T ss_pred HhhhHHHHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC-cceEEecccccee
Confidence 344556667777776666788999999999999988876 4789999999998888877666433 3578888887654
No 399
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=81.96 E-value=1.7 Score=50.29 Aligned_cols=64 Identities=23% Similarity=0.345 Sum_probs=55.1
Q ss_pred CCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEEccHHHHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKN-CRFVCAKAEDVMG 663 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~n-v~f~~gDaed~l~ 663 (783)
.++-+|||..|++|.-+|-.|+.. .+|++-|.++.+|+..++|++.|++++ ++...+|+-.++-
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~ 175 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMY 175 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHH
Confidence 356689999999999999999873 699999999999999999999998865 7777888876653
No 400
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=81.82 E-value=1.1 Score=54.30 Aligned_cols=76 Identities=13% Similarity=0.125 Sum_probs=65.3
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr 240 (783)
..+++|.|+|+.-+.+.|+.++.++| +....+.. |+.+|-+||-|.++.++.++.-..++..++-+.+.|...+|-
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~ 815 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPE 815 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCc
Confidence 56799999999999999999999995 44443333 778999999999999999999999999999998888877763
No 401
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=81.55 E-value=3.9 Score=46.01 Aligned_cols=60 Identities=25% Similarity=0.148 Sum_probs=43.9
Q ss_pred cCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh-CCEEEEEeCCHHHHHHHHHH
Q 003969 580 QVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRN 642 (783)
Q Consensus 580 QvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~-~~~VigVE~s~~AIe~Ak~N 642 (783)
|--....-.|++.|.++. +-..|+|+|+|.|.++..|+-+ .-.|.|||.+..+.+.|++-
T Consensus 135 qhEi~~lselvSsi~~f~---gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 135 QHEIRRLSELVSSISDFT---GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred HHHHHHHHHHHHHHHhhc---CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHH
Confidence 433334444555555554 3467999999999999999977 46999999998887777654
No 402
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=81.55 E-value=1.7 Score=40.59 Aligned_cols=48 Identities=23% Similarity=0.154 Sum_probs=33.3
Q ss_pred HHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCH
Q 003969 586 AEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNA 633 (783)
Q Consensus 586 ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~ 633 (783)
|.-|...-.......+....+|||||.|.+.--|.+.+-.-.|+|.-.
T Consensus 43 AAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~ 90 (112)
T PF07757_consen 43 AAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGYPGWGIDARR 90 (112)
T ss_pred HHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCCCcccccccc
Confidence 333333333333333445799999999999999999888888998643
No 403
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=81.19 E-value=0.61 Score=47.45 Aligned_cols=32 Identities=19% Similarity=0.767 Sum_probs=27.9
Q ss_pred ccccccccccccccCCCCCCCccccCcCccCC
Q 003969 81 HKTSLCSYFRKVGTCCHGSTCRYAHGEEELRI 112 (783)
Q Consensus 81 ~kt~~c~~~~~~~~c~~g~~c~~ahg~~elr~ 112 (783)
|..-.|+-|..+|.|-||+.|.|-|.-++...
T Consensus 139 ~qpdVCKdyk~TGYCGYGDsCKflH~R~D~Kt 170 (259)
T COG5152 139 TQPDVCKDYKETGYCGYGDSCKFLHDRSDFKT 170 (259)
T ss_pred cCcccccchhhcccccCCchhhhhhhhhhhhc
Confidence 55678999999999999999999998776554
No 404
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=80.73 E-value=7.3 Score=40.55 Aligned_cols=64 Identities=14% Similarity=0.126 Sum_probs=51.7
Q ss_pred hhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 595 ~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
+...+.+|.+||=||+-+||.--+++.-+ +.|+|||.++......-.-++. -.|+--+.+||..
T Consensus 70 ~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~--R~Ni~PIL~DA~~ 135 (231)
T COG1889 70 KNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK--RPNIIPILEDARK 135 (231)
T ss_pred ccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh--CCCceeeecccCC
Confidence 44567889999999999999999999885 5899999999998887766553 3467777777754
No 405
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=80.32 E-value=3.1 Score=48.11 Aligned_cols=59 Identities=24% Similarity=0.351 Sum_probs=49.8
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhc--cceeeEeec----cCCccEEEEEeCCHHHHHHHHHH
Q 003969 163 DVELSKCLVHLPRKWHSDNLKKFLADH--GILYKSAKK----KKGMTVGFVKFESVEQLKNAVEE 221 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~~~~~Lkklf~~~--~v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~ 221 (783)
++.-.|+||+||+-++..+|..+|+.+ +|.++-|-+ +-.+|=|=|||++...--+||++
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 334569999999999999999999955 688877766 45679999999999999999875
No 406
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=79.15 E-value=7 Score=36.13 Aligned_cols=67 Identities=10% Similarity=0.195 Sum_probs=47.1
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhccceeeEe------------eccCCccEEEEEeCCHHHHHHHHHHHcCCccCCcee
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHGILYKSA------------KKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTL 232 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~v~~~~i------------~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L 232 (783)
...|.|-+.|.. ....+-..|+++|-..... .......|--|+|+++.+|++|+.. ||..+.|..+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEE
Confidence 456999999988 5666777779997332222 1123468999999999999999987 9999999765
Q ss_pred E
Q 003969 233 K 233 (783)
Q Consensus 233 ~ 233 (783)
-
T Consensus 84 v 84 (100)
T PF05172_consen 84 V 84 (100)
T ss_dssp E
T ss_pred E
Confidence 4
No 407
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=77.78 E-value=2.5 Score=47.81 Aligned_cols=62 Identities=24% Similarity=0.244 Sum_probs=50.9
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeecc----------C-------CccEEEEEeCCHHHHHHHHHHHcCCc
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKK----------K-------GMTVGFVKFESVEQLKNAVEELEGIS 226 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~----------r-------~~gfgFVtF~s~Eea~kAIe~LnG~~ 226 (783)
+..|.+-|||-+-..+.|.|+|..+| |..++|-+- . .+-.|||.|.+.+.|.||.+.||...
T Consensus 231 srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e~ 310 (484)
T KOG1855|consen 231 SRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPEQ 310 (484)
T ss_pred cceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchhh
Confidence 45688999999999999999999996 666666551 1 24678999999999999999996654
No 408
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=76.94 E-value=6.8 Score=40.74 Aligned_cols=62 Identities=11% Similarity=0.123 Sum_probs=45.3
Q ss_pred HHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcE
Q 003969 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNC 651 (783)
Q Consensus 589 L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~nv 651 (783)
+...+.+++.. .+.+||+|+||||-=+.++|+.. -...-.|.+.......+..+...++.|+
T Consensus 14 Il~vL~~~l~~-~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv 77 (204)
T PF06080_consen 14 ILEVLKQYLPD-SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNV 77 (204)
T ss_pred HHHHHHHHhCc-cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCccc
Confidence 33334444432 23369999999999999999986 4677889999988777777777777663
No 409
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=76.86 E-value=4.6 Score=46.72 Aligned_cols=67 Identities=13% Similarity=0.099 Sum_probs=46.2
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhccceeeEee--c---c--CCcc---EEEEEeCCHHHHHHHHHHHcCCccCCceeEE
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHGILYKSAK--K---K--KGMT---VGFVKFESVEQLKNAVEELEGISIGNKTLKV 234 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~v~~~~i~--~---~--r~~g---fgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V 234 (783)
..||+||+||+.+++++|...|..||-..+.-. . + ..+| |.|.-|+++...+ ..|++-.....++..
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~---~Ll~aC~~~~~~~yf 335 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQ---SLLSACSEGEGNYYF 335 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHH---HHHHHHhhcccceEE
Confidence 568999999999999999999999963222111 1 1 2345 9999998766544 445555555555544
No 410
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=76.42 E-value=14 Score=34.68 Aligned_cols=63 Identities=24% Similarity=0.189 Sum_probs=46.0
Q ss_pred cEEEeCCCcccCHHHHHHHhhhc--cceeeEeec-c-CCccEEEEEeCCHHHHHHHHHHHcCCccCC
Q 003969 167 SKCLVHLPRKWHSDNLKKFLADH--GILYKSAKK-K-KGMTVGFVKFESVEQLKNAVEELEGISIGN 229 (783)
Q Consensus 167 ~i~V~nLp~~~~~~~Lkklf~~~--~v~~~~i~~-~-r~~gfgFVtF~s~Eea~kAIe~LnG~~~~G 229 (783)
=+++...|+.+..++|..|.+.+ .|...+|++ + ..+--+-+.|++++.|+...+.+||+.|.-
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 35555556666677787776666 466666665 2 344567889999999999999999999865
No 411
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=75.47 E-value=4.8 Score=42.51 Aligned_cols=55 Identities=16% Similarity=0.320 Sum_probs=42.4
Q ss_pred CeEEEecCCcCHHHHHHhhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHH
Q 003969 603 TLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659 (783)
Q Consensus 603 ~~VLDLgCGtGti~l~LA~~-~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDae 659 (783)
..++|||||.|.+.-.|... +.+++-+|.+..|++.++.. +.+++. +.++.+|-+
T Consensus 74 p~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i~-~~~~v~DEE 129 (325)
T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSIE-TSYFVGDEE 129 (325)
T ss_pred cceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCceE-EEEEecchh
Confidence 47999999999999988766 58999999999999988753 334442 555566643
No 412
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=75.32 E-value=5.5 Score=42.17 Aligned_cols=91 Identities=18% Similarity=0.219 Sum_probs=56.1
Q ss_pred CCeEEEECCCccccCCHHHHHHHHHHHhhhccC------CCCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHH
Q 003969 567 SNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL------GPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSD 638 (783)
Q Consensus 567 ~gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~~------~~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~ 638 (783)
.++++.=-|..|.-..-..-..-+..+.+++.. .++-++||+|.|.-.|=-.+..+ +-+.+|.|+++.+++.
T Consensus 38 Y~v~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~s 117 (292)
T COG3129 38 YAVRYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSS 117 (292)
T ss_pred cceeEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHH
Confidence 345544457777653332222233334444422 23457899976655543333322 4589999999999999
Q ss_pred HHHHHHHc-CCCc-EEEEEcc
Q 003969 639 AHRNAEIN-GIKN-CRFVCAK 657 (783)
Q Consensus 639 Ak~Na~~n-gl~n-v~f~~gD 657 (783)
|+.++..| ++.+ |++....
T Consensus 118 A~~ii~~N~~l~~~I~lr~qk 138 (292)
T COG3129 118 AKAIISANPGLERAIRLRRQK 138 (292)
T ss_pred HHHHHHcCcchhhheeEEecc
Confidence 99999998 7754 7776543
No 413
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=74.35 E-value=6.5 Score=43.87 Aligned_cols=65 Identities=17% Similarity=0.183 Sum_probs=55.8
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhccceeeEeec--cCC--ccEEEEEeCCHHHHHHHHHHHcCCccCCc
Q 003969 166 LSKCLVHLPRKWHSDNLKKFLADHGILYKSAKK--KKG--MTVGFVKFESVEQLKNAVEELEGISIGNK 230 (783)
Q Consensus 166 ~~i~V~nLp~~~~~~~Lkklf~~~~v~~~~i~~--~r~--~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr 230 (783)
.-++.-|-|-.+++++|-++|...+|...+++. .++ ..-|.++|++.++|..|+-+||-+.++|.
T Consensus 407 ~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~kserSssGllEfe~~s~Aveal~~~NH~pi~~p 475 (494)
T KOG1456|consen 407 NVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLKSERSSSGLLEFENKSDAVEALMKLNHYPIEGP 475 (494)
T ss_pred ceeEEecCCCccCHHHHHHHhhhcCCCcceEEeecccccccccceeeeehHHHHHHHHHHhccccccCC
Confidence 348899999999999999999999887777776 222 25678999999999999999999999875
No 414
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=73.42 E-value=7.4 Score=43.75 Aligned_cols=64 Identities=13% Similarity=0.153 Sum_probs=50.2
Q ss_pred ccCCCCCeEEEecCCcCHHHHHHhhhC--C----EEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 597 ADLGPDTLLFDVCCGTGTIGLTLAHRV--G----MVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 597 l~~~~g~~VLDLgCGtGti~l~LA~~~--~----~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
+++.++.+|||+|+-.|.-++.|.... . .|++=|.++.-+...++-+......++.+...++..
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~ 220 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASL 220 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeeccccee
Confidence 467789999999999999998777653 2 899999999999998888765555566666555543
No 415
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=73.02 E-value=7.7 Score=45.60 Aligned_cols=72 Identities=18% Similarity=0.224 Sum_probs=49.7
Q ss_pred CCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh------CCEEEEEeCCHHHHHHHHHHHHHcCC
Q 003969 575 PTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR------VGMVIGIEMNASAVSDAHRNAEINGI 648 (783)
Q Consensus 575 p~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~------~~~VigVE~s~~AIe~Ak~Na~~ngl 648 (783)
|.+=|.+.+.....+...+.. ...++..|.|++||+|.+-+...+. ...++|-|..+.+...|+.|+..+++
T Consensus 193 ~~g~~~Tp~~Iv~l~~~~~~~--~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~ 270 (501)
T TIGR00497 193 SGGEFFTPQDISELLARIAIG--KKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI 270 (501)
T ss_pred cCceeeCcHHHHHHHHHHhcc--CCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC
Confidence 333344566555554432221 1225578999999999998765432 14689999999999999999887776
No 416
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=72.78 E-value=1.2 Score=46.14 Aligned_cols=40 Identities=23% Similarity=0.313 Sum_probs=36.8
Q ss_pred CCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHH
Q 003969 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHR 641 (783)
Q Consensus 602 g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~ 641 (783)
..++||||+|-|-+++.++-.+.+|++.|+|..|+...++
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~k 152 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKK 152 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhh
Confidence 4689999999999999999999999999999999988765
No 417
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.20 E-value=1.4 Score=49.27 Aligned_cols=24 Identities=38% Similarity=1.046 Sum_probs=21.8
Q ss_pred cccccccccccCCCCCCCccccCcC
Q 003969 84 SLCSYFRKVGTCCHGSTCRYAHGEE 108 (783)
Q Consensus 84 ~~c~~~~~~~~c~~g~~c~~ahg~~ 108 (783)
.+|+||.+ |.|.||+.|||.|..-
T Consensus 9 tic~~~~~-g~c~~g~~cr~~h~~~ 32 (344)
T KOG1039|consen 9 TICKYYQK-GNCKFGDLCRLSHSLP 32 (344)
T ss_pred hhhhhccc-ccccccceeeeeccCc
Confidence 79999977 8999999999999754
No 418
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=71.31 E-value=0.73 Score=55.79 Aligned_cols=73 Identities=16% Similarity=0.185 Sum_probs=58.7
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeeEee----ccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAK----KKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~----~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
..+++|.||+..+...+|..+|..++ +..+.+. .++-+|.|||.|-.++++.+||...++..++...+-++-.
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i~g~ 744 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAISGP 744 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhheeCC
Confidence 35799999999999999999999884 3322222 2778899999999999999999999999888666655543
No 419
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=71.09 E-value=6 Score=42.81 Aligned_cols=73 Identities=16% Similarity=0.109 Sum_probs=41.6
Q ss_pred HHHHhhhccCC-CCCeEEEecCCcCHHH--HHHhhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHH
Q 003969 590 YSLGGDWADLG-PDTLLFDVCCGTGTIG--LTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662 (783)
Q Consensus 590 ~~~i~~~l~~~-~g~~VLDLgCGtGti~--l~LA~~---~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l 662 (783)
...+.+++... .-...||||||.=|.+ -.+|+. ..+|+-||++|-.+..++.-+..+.-....++.+|+.+.-
T Consensus 56 l~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~ 134 (267)
T PF04672_consen 56 LRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPE 134 (267)
T ss_dssp HHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HH
T ss_pred HHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHH
Confidence 33444443333 3368999999965433 245544 3699999999999999987665443223899999997753
No 420
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=70.92 E-value=17 Score=30.74 Aligned_cols=54 Identities=13% Similarity=0.079 Sum_probs=39.5
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhc--cceeeEeec-cCCccEEEEEeCCHHHHHHHHHHH
Q 003969 166 LSKCLVHLPRKWHSDNLKKFLADH--GILYKSAKK-KKGMTVGFVKFESVEQLKNAVEEL 222 (783)
Q Consensus 166 ~~i~V~nLp~~~~~~~Lkklf~~~--~v~~~~i~~-~r~~gfgFVtF~s~Eea~kAIe~L 222 (783)
-+|+|+|+ -.++-++++.+|..| +-...+|.= ..+ =+=|.|.+++.|.+|+..|
T Consensus 6 eavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdDt--ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDDT--SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecCC--cEEEEECCHHHHHHHHHcC
Confidence 36999999 679999999999999 112222221 212 2568999999999999875
No 421
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=68.99 E-value=10 Score=30.72 Aligned_cols=50 Identities=14% Similarity=0.220 Sum_probs=35.3
Q ss_pred cEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHH
Q 003969 167 SKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAV 219 (783)
Q Consensus 167 ~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAI 219 (783)
.|-|.|.|....+ .+.+.|..+| |.-..+ .....+.||+|.+..+|++|+
T Consensus 3 wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~--~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 3 WISVSGFPPDLAE-EVLEHFASFGEIVDIYV--PESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEEEeECchHHH-HHHHHHHhcCCEEEEEc--CCCCcEEEEEECCHHHHHhhC
Confidence 4778888766554 4555777886 443222 345689999999999999984
No 422
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=68.46 E-value=3.6 Score=44.62 Aligned_cols=38 Identities=16% Similarity=0.157 Sum_probs=33.1
Q ss_pred CCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVS 637 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe 637 (783)
..+++|||||||+|.-++.+...+ ..|...|.+.+.++
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR 153 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence 467899999999999999988876 78999999888773
No 423
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=68.39 E-value=11 Score=44.01 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=27.9
Q ss_pred CeEEEecCCcCHHHHHHhhhCCEEEEE---eCCHHHHHHHHH
Q 003969 603 TLLFDVCCGTGTIGLTLAHRVGMVIGI---EMNASAVSDAHR 641 (783)
Q Consensus 603 ~~VLDLgCGtGti~l~LA~~~~~VigV---E~s~~AIe~Ak~ 641 (783)
..+||+|||+|+||..|..+.-.++.+ |..+..++.|.+
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale 160 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE 160 (506)
T ss_pred EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh
Confidence 479999999999999999875333332 445556666654
No 424
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=68.28 E-value=7.3 Score=39.91 Aligned_cols=57 Identities=25% Similarity=0.251 Sum_probs=40.7
Q ss_pred HHHHHHHhhhcc--ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHc--CCccCCceeEEEecC
Q 003969 179 SDNLKKFLADHG--ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELE--GISIGNKTLKVANVV 238 (783)
Q Consensus 179 ~~~Lkklf~~~~--v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~Ln--G~~~~Gr~L~V~~A~ 238 (783)
-..|+++|..++ +....++. -+-..|.|.+.+.|.+|...|+ |..+.|..|+|-.++
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~s---FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKS---FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETT---TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred HHHHHHHHHhcCCceEEEEcCC---CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 367888998883 44444433 3446899999999999999999 999999999998774
No 425
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=68.25 E-value=6 Score=44.12 Aligned_cols=45 Identities=22% Similarity=0.277 Sum_probs=39.9
Q ss_pred CeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCC
Q 003969 603 TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI 648 (783)
Q Consensus 603 ~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl 648 (783)
..++|+|.|+|.++-.+...+.+|-+|+.+..-|-.++.+.. -|+
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~-~gV 223 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA-PGV 223 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc-CCc
Confidence 689999999999999888888899999999999999888875 453
No 426
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=68.13 E-value=12 Score=33.51 Aligned_cols=53 Identities=21% Similarity=0.442 Sum_probs=38.2
Q ss_pred EEEeCCCcccCHHHHHHHhhhccceeeEeeccCCccEEEEEeCCHHHHHHHHHHHc
Q 003969 168 KCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELE 223 (783)
Q Consensus 168 i~V~nLp~~~~~~~Lkklf~~~~v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~Ln 223 (783)
||--..|..|...||-++|+.+|-..+.-+- -.=|||...+.+.+..|+..++
T Consensus 11 VFhltFPkeWK~~DI~qlFspfG~I~VsWi~---dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 11 VFHLTFPKEWKTSDIYQLFSPFGQIYVSWIN---DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp EEEEE--TT--HHHHHHHCCCCCCEEEEEEC---TTEEEEEECCCHHHHHHHHHHT
T ss_pred EEEEeCchHhhhhhHHHHhccCCcEEEEEEc---CCcEEEEeecHHHHHHHHHHhc
Confidence 4444499999999999999999643333222 2459999999999999999986
No 427
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=67.99 E-value=5.2 Score=39.50 Aligned_cols=35 Identities=14% Similarity=0.310 Sum_probs=28.4
Q ss_pred EEEeCCHHHHHHHHHHHHHc---CCCcEEEEEccHHHH
Q 003969 627 IGIEMNASAVSDAHRNAEIN---GIKNCRFVCAKAEDV 661 (783)
Q Consensus 627 igVE~s~~AIe~Ak~Na~~n---gl~nv~f~~gDaed~ 661 (783)
+|||+|++|++.|+++.+.. +..+++|+++|++++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l 38 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL 38 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC
Confidence 48999999999998776532 235799999999874
No 428
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=67.66 E-value=3.8 Score=47.26 Aligned_cols=52 Identities=37% Similarity=0.606 Sum_probs=36.6
Q ss_pred ccccccccccCCCCCCCccc--cCcCc------cCCCCCCCCCcch------HHHHhhhhhc-ccch
Q 003969 85 LCSYFRKVGTCCHGSTCRYA--HGEEE------LRIRPDNTWDPTS------ERAKKARKLE-DGDK 136 (783)
Q Consensus 85 ~c~~~~~~~~c~~g~~c~~a--hg~~e------lr~~~~~~~~~~s------~r~k~~~k~e-~~E~ 136 (783)
-|..|...|.|+||-+|||+ |-..+ .+..|++.+-|+. +++.+++|.+ ..|+
T Consensus 116 ~Cp~f~s~G~Cp~G~~CRFl~aHld~~g~~~~~kek~~d~~~~~~t~N~~s~elq~~LrKre~~fek 182 (614)
T KOG2333|consen 116 SCPVFESLGFCPYGFKCRFLGAHLDIEGNNLIQKEKDPDGQFPPTTKNGVSKELQVDLRKREYDFEK 182 (614)
T ss_pred ccceeeccccCCccceeehhhcccCccccchhhhhhCcccCCCCccccccCHHHHHHHHHhhcChHH
Confidence 58888888999999999995 54443 3456777777754 6777777654 3444
No 429
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=66.34 E-value=19 Score=30.78 Aligned_cols=54 Identities=9% Similarity=0.127 Sum_probs=41.8
Q ss_pred ccCHHHHHHHhhhccceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeE
Q 003969 176 KWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLK 233 (783)
Q Consensus 176 ~~~~~~Lkklf~~~~v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~ 233 (783)
.++..+||+-|.+++-. +|... ..|| ||.|.+-+||++.....||..+-+-.|.
T Consensus 11 ~~~v~d~K~~Lr~y~~~--~I~~d-~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD--RIRDD-RTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCCcc--eEEec-CCEE-EEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 35678999999998643 22222 3466 9999999999999999999988776654
No 430
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=65.29 E-value=13 Score=42.50 Aligned_cols=65 Identities=18% Similarity=0.270 Sum_probs=53.4
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhc--cceeeEeec-c-CCccEEEEEeCCHHHHHHHHHHHcCCccCC
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADH--GILYKSAKK-K-KGMTVGFVKFESVEQLKNAVEELEGISIGN 229 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~--~v~~~~i~~-~-r~~gfgFVtF~s~Eea~kAIe~LnG~~~~G 229 (783)
+.-|||-.+|-+++.-||-.|+..+ .|...++++ + ..+--..+.|++.++|....+.+||..|.-
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 5569999999999999999999987 466566555 2 223345799999999999999999999875
No 431
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=64.73 E-value=12 Score=41.68 Aligned_cols=60 Identities=13% Similarity=0.082 Sum_probs=46.5
Q ss_pred HhhhccCCCCCeEEEecCC-cCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEc
Q 003969 593 GGDWADLGPDTLLFDVCCG-TGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCA 656 (783)
Q Consensus 593 i~~~l~~~~g~~VLDLgCG-tGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~g 656 (783)
+......+.|.+||=+|+| +|..++..|+. +.+|+.+|+++..++.|++ .|.+.+.....
T Consensus 161 Acr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~----~Ga~~~~~~~~ 223 (354)
T KOG0024|consen 161 ACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK----FGATVTDPSSH 223 (354)
T ss_pred hhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH----hCCeEEeeccc
Confidence 4556678889999999999 57777777776 4799999999999999987 47655444433
No 432
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=63.21 E-value=13 Score=40.09 Aligned_cols=45 Identities=22% Similarity=0.173 Sum_probs=39.1
Q ss_pred cEEEeCCCcccCHHHHHHHhhhccceeeEeeccCCccEEEEEeCC
Q 003969 167 SKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFES 211 (783)
Q Consensus 167 ~i~V~nLp~~~~~~~Lkklf~~~~v~~~~i~~~r~~gfgFVtF~s 211 (783)
.|||+|||+++.-+|||.-|.+.+....++--+...|-+|..|.+
T Consensus 332 di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~ 376 (396)
T KOG4410|consen 332 DIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGN 376 (396)
T ss_pred ceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCC
Confidence 599999999999999999999998777776656667889999976
No 433
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=61.91 E-value=10 Score=39.12 Aligned_cols=51 Identities=20% Similarity=0.392 Sum_probs=39.2
Q ss_pred CCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEc-cHHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCA-KAEDV 661 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~g-Daed~ 661 (783)
.++.+|||+||-.|..+...-+++ +.|+|||+-.- .-+..+.++++ |+.+-
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~~Ga~~i~~~dvtdp 122 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPPEGATIIQGNDVTDP 122 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCCCCcccccccccCCH
Confidence 468899999999999999888875 69999998432 23345677777 76654
No 434
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=61.51 E-value=4.9 Score=27.35 Aligned_cols=20 Identities=35% Similarity=0.949 Sum_probs=17.7
Q ss_pred ccccccccccCCCCCCCcccc
Q 003969 85 LCSYFRKVGTCCHGSTCRYAH 105 (783)
Q Consensus 85 ~c~~~~~~~~c~~g~~c~~ah 105 (783)
||.|-..+|.| .-..|.|-|
T Consensus 2 lC~yEl~Gg~C-nd~~C~~QH 21 (23)
T PF10650_consen 2 LCPYELTGGVC-NDPDCEFQH 21 (23)
T ss_pred CCccccCCCee-CCCCCCccc
Confidence 89999998899 667899998
No 435
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=60.17 E-value=77 Score=38.14 Aligned_cols=63 Identities=17% Similarity=0.120 Sum_probs=42.3
Q ss_pred cCCCCCeEEEecCCcCHHHHHHhhh----CCEEEEEeCCHHHHHHHHHHHHHcCC--------CcEEEEEccHHHH
Q 003969 598 DLGPDTLLFDVCCGTGTIGLTLAHR----VGMVIGIEMNASAVSDAHRNAEINGI--------KNCRFVCAKAEDV 661 (783)
Q Consensus 598 ~~~~g~~VLDLgCGtGti~l~LA~~----~~~VigVE~s~~AIe~Ak~Na~~ngl--------~nv~f~~gDaed~ 661 (783)
....|.+|| |..|+|.+|..+++. +.+|+++..+.+.+......+..+++ .++.++.+|+.+.
T Consensus 76 ~~~~gKvVL-VTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~ 150 (576)
T PLN03209 76 DTKDEDLAF-VAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKP 150 (576)
T ss_pred ccCCCCEEE-EECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCH
Confidence 344566666 556678889887654 46899999998877665554433221 3588999998764
No 436
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=60.16 E-value=1e+02 Score=31.00 Aligned_cols=51 Identities=18% Similarity=-0.106 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHH-hhhCCEEEEEeCCHH
Q 003969 582 NTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTL-AHRVGMVIGIEMNAS 634 (783)
Q Consensus 582 N~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~L-A~~~~~VigVE~s~~ 634 (783)
....++.|.+.+.+.+. .+.+|+-|||=+-...+.- .....+++..|++..
T Consensus 8 s~~T~~~l~~~l~~~~~--~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~R 59 (162)
T PF10237_consen 8 SDETAEFLARELLDGAL--DDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRR 59 (162)
T ss_pred CHHHHHHHHHHHHHhcC--CCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecch
Confidence 45567777777777543 4578999988776666544 112368888998865
No 437
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=58.70 E-value=21 Score=34.16 Aligned_cols=50 Identities=24% Similarity=0.240 Sum_probs=32.3
Q ss_pred EecCCcC--HHHHHHh--hh--CCEEEEEeCCHHHHHHHHHH--HHHcCCC-cEEEEEc
Q 003969 607 DVCCGTG--TIGLTLA--HR--VGMVIGIEMNASAVSDAHRN--AEINGIK-NCRFVCA 656 (783)
Q Consensus 607 DLgCGtG--ti~l~LA--~~--~~~VigVE~s~~AIe~Ak~N--a~~ngl~-nv~f~~g 656 (783)
|+|++.| .....+. .. ..+|+++|.++..++..+.| +..+... .++++..
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~ 59 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPY 59 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEe
Confidence 8999999 6655543 22 36899999999999999999 7776442 2444443
No 438
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=57.53 E-value=16 Score=36.04 Aligned_cols=37 Identities=27% Similarity=0.450 Sum_probs=29.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 003969 203 TVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (783)
Q Consensus 203 gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr 240 (783)
+--+|||++-+.|.+|++ |+|..+.|+.|+|+...|-
T Consensus 71 ~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 71 DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 446899999999998875 6999999999999866553
No 439
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=57.43 E-value=19 Score=37.85 Aligned_cols=41 Identities=12% Similarity=0.324 Sum_probs=21.1
Q ss_pred HHHhhhccCC-CCCeEEEecCCcCHHHHHHhhhCCEEEEEeCC
Q 003969 591 SLGGDWADLG-PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMN 632 (783)
Q Consensus 591 ~~i~~~l~~~-~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s 632 (783)
+.+++++.-. ++..|.|+|||-+.++..+... ..|...|+.
T Consensus 61 d~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~-~~V~SfDLv 102 (219)
T PF05148_consen 61 DVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNK-HKVHSFDLV 102 (219)
T ss_dssp HHHHHHHCTS-TTS-EEEES-TT-HHHHH--S----EEEEESS
T ss_pred HHHHHHHHhcCCCEEEEECCCchHHHHHhcccC-ceEEEeecc
Confidence 3444554433 3579999999999999776532 245555553
No 440
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=56.86 E-value=7 Score=46.54 Aligned_cols=69 Identities=16% Similarity=0.121 Sum_probs=58.0
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhccceee-EeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 163 DVELSKCLVHLPRKWHSDNLKKFLADHGILYK-SAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~~~~~Lkklf~~~~v~~~-~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
.+.+.++|+|+.....+.=++..|+..|.... +.. -|||..|...+-...|+..|+-...+|.+|.++.
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~-----~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD-----KFGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh-----hhcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 34568999999999999999999999985432 221 1999999999999999999999999999987653
No 441
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=55.81 E-value=16 Score=39.27 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=34.7
Q ss_pred CCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCC
Q 003969 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI 648 (783)
Q Consensus 602 g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl 648 (783)
...||+||+|||.-|+.+|...+--+...-.+..+...+.|...|++
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~ 133 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNI 133 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhh
Confidence 45799999999999999998654444455556667777777665554
No 442
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=55.61 E-value=17 Score=43.52 Aligned_cols=46 Identities=17% Similarity=0.436 Sum_probs=34.0
Q ss_pred HHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCH
Q 003969 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNA 633 (783)
Q Consensus 588 ~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~ 633 (783)
.|++.-..+--+.++..||||||-.|......++.+ .-|+|||+.|
T Consensus 31 KLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 31 KLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred HHHHHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 344433333334567899999999999999888874 6899999865
No 443
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=53.33 E-value=15 Score=41.65 Aligned_cols=71 Identities=21% Similarity=0.201 Sum_probs=52.0
Q ss_pred HHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHc-------CC--CcEEEEEccH
Q 003969 590 YSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEIN-------GI--KNCRFVCAKA 658 (783)
Q Consensus 590 ~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~n-------gl--~nv~f~~gDa 658 (783)
...+.+-+.+.+++...|||+|+|.....+|..+ +.-+|+|+....-..|..|...+ |- ..+..++++.
T Consensus 181 l~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf 260 (419)
T KOG3924|consen 181 LRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSF 260 (419)
T ss_pred HHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccccc
Confidence 3445566788899999999999999988887764 67899999888777777765432 32 2367777765
Q ss_pred HH
Q 003969 659 ED 660 (783)
Q Consensus 659 ed 660 (783)
.+
T Consensus 261 ~~ 262 (419)
T KOG3924|consen 261 LD 262 (419)
T ss_pred CC
Confidence 43
No 444
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.20 E-value=9.8 Score=38.35 Aligned_cols=60 Identities=20% Similarity=0.126 Sum_probs=45.5
Q ss_pred HHHHHHHhhhccCCCCCeEEEecCC-cCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHc
Q 003969 587 EKLYSLGGDWADLGPDTLLFDVCCG-TGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEIN 646 (783)
Q Consensus 587 e~L~~~i~~~l~~~~g~~VLDLgCG-tGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~n 646 (783)
++|...+++-...-.|..||+||.| +|.-|+.+|..+ ..|...|-+..+|+..++-...|
T Consensus 15 eala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n 77 (201)
T KOG3201|consen 15 EALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSN 77 (201)
T ss_pred HHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcc
Confidence 4455555554444457899999999 567777777764 68999999999999988876666
No 445
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=53.11 E-value=25 Score=40.10 Aligned_cols=48 Identities=10% Similarity=0.120 Sum_probs=36.5
Q ss_pred hhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHH
Q 003969 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRN 642 (783)
Q Consensus 595 ~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~N 642 (783)
+.+.+.++.+||-|.+|....--.|....++|++||+|+..+...+-.
T Consensus 29 ~aL~i~~~d~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp~Q~aLleLK 76 (380)
T PF11899_consen 29 EALNIGPDDRVLTITSAGCNALDYLLAGPKRIHAVDLNPAQNALLELK 76 (380)
T ss_pred HHhCCCCCCeEEEEccCCchHHHHHhcCCceEEEEeCCHHHHHHHHHH
Confidence 446778899999996655555445666679999999999988777644
No 446
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=52.99 E-value=27 Score=34.24 Aligned_cols=38 Identities=13% Similarity=0.317 Sum_probs=30.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHHHH
Q 003969 625 MVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAEDVM 662 (783)
Q Consensus 625 ~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~~gDaed~l 662 (783)
+|+|+|+.++||+.+++.++..++. ++++++..=+.+.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~ 39 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLD 39 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGG
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHH
Confidence 6999999999999999999999884 5999998766644
No 447
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=52.93 E-value=5.4 Score=46.02 Aligned_cols=28 Identities=29% Similarity=0.733 Sum_probs=24.6
Q ss_pred ccccccccccc--ccCCCCCCCccccCcCc
Q 003969 82 KTSLCSYFRKV--GTCCHGSTCRYAHGEEE 109 (783)
Q Consensus 82 kt~~c~~~~~~--~~c~~g~~c~~ahg~~e 109 (783)
+..||.....+ ..|+||++|+|-|..+-
T Consensus 75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~a 104 (614)
T KOG2333|consen 75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEA 104 (614)
T ss_pred hhccChHhhcCCCccCcccccccccccHHH
Confidence 67899999887 58999999999998764
No 448
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=52.38 E-value=54 Score=34.71 Aligned_cols=70 Identities=16% Similarity=0.112 Sum_probs=55.8
Q ss_pred CCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHHhhhc
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYL 670 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~~l~~~~~ 670 (783)
.+|.+||.+|-|.|.+.-.+-+.- .+=+-||..++.++..+.+.-. .-.||..+.|..+++++.+...++
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~-ek~nViil~g~WeDvl~~L~d~~F 170 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWR-EKENVIILEGRWEDVLNTLPDKHF 170 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccc-cccceEEEecchHhhhccccccCc
Confidence 578899999999999988887663 4556799999999988877432 225899999999999988765544
No 449
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=52.23 E-value=13 Score=42.00 Aligned_cols=96 Identities=20% Similarity=0.155 Sum_probs=60.4
Q ss_pred ceEEeeCCeEEEECCCccccCCHHH--HHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHH
Q 003969 561 RIHDSISNLRFCISPTAFFQVNTLA--AEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVS 637 (783)
Q Consensus 561 ~I~E~i~gl~f~isp~sFfQvN~~~--ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe 637 (783)
-++++-++..|..++..=+..+... ....+..+.. ...++..++|++||.|.....++... ..++|++.++.-+.
T Consensus 70 dl~~~~w~~~~h~~~~~e~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~ 147 (364)
T KOG1269|consen 70 DLYERNWGQSFHFGRIPEGNSNEMFWIRHEGIVALRE--SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAF 147 (364)
T ss_pred hhhhhhhccchhccCccchhHHHHHHHhhcchHHHhh--cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHH
Confidence 4555556666766655112222211 1112222222 34566789999999999999998874 79999999999888
Q ss_pred HHHHHHHHcCCCc-EEEEEccH
Q 003969 638 DAHRNAEINGIKN-CRFVCAKA 658 (783)
Q Consensus 638 ~Ak~Na~~ngl~n-v~f~~gDa 658 (783)
.+..-+...++.+ ..|+.+|.
T Consensus 148 ~~~~~~~~~~l~~k~~~~~~~~ 169 (364)
T KOG1269|consen 148 RANELAKKAYLDNKCNFVVADF 169 (364)
T ss_pred HHHHHHHHHHhhhhcceehhhh
Confidence 8887776666644 34444443
No 450
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=50.64 E-value=6.8 Score=41.77 Aligned_cols=31 Identities=23% Similarity=0.651 Sum_probs=26.5
Q ss_pred CCCCcccccccccccccccCCCCCCCccccCc
Q 003969 76 SLHPLHKTSLCSYFRKVGTCCHGSTCRYAHGE 107 (783)
Q Consensus 76 ~~~~~~kt~~c~~~~~~~~c~~g~~c~~ahg~ 107 (783)
..-.-|+-..|..|.++ .|++|..|.|-|--
T Consensus 145 ~pvT~~rea~C~~~e~~-~C~rG~~CnFmH~k 175 (260)
T KOG2202|consen 145 SPVTDFREAICGQFERT-ECSRGGACNFMHVK 175 (260)
T ss_pred cCcCchhhhhhcccccc-cCCCCCcCcchhhh
Confidence 34467899999999885 99999999999965
No 451
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=48.17 E-value=19 Score=44.09 Aligned_cols=45 Identities=24% Similarity=0.154 Sum_probs=41.2
Q ss_pred CCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAE 644 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~ 644 (783)
..+..+||-++|.|.|.+...+.+..|++||++|.|.-..|.-++
T Consensus 89 ~~~~~~lDPfAG~GSIPlEAlRLG~~v~AvelnPvAylfLKavlE 133 (875)
T COG1743 89 FEGPKLLDPFAGGGSIPLEALRLGLEVVAVELNPVAYLFLKAVLE 133 (875)
T ss_pred ccCCcccccccCCCccchHHHhcCceeEEEecccHHHHHHHHHHh
Confidence 356789999999999999999999999999999999999998765
No 452
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.98 E-value=6.2 Score=42.84 Aligned_cols=30 Identities=20% Similarity=0.762 Sum_probs=26.4
Q ss_pred ccccccccccccccCCCCCCCccccCcCcc
Q 003969 81 HKTSLCSYFRKVGTCCHGSTCRYAHGEEEL 110 (783)
Q Consensus 81 ~kt~~c~~~~~~~~c~~g~~c~~ahg~~el 110 (783)
|---+|+-|..+|.|-||+.|.|-|--..-
T Consensus 184 ~qpDicKdykeTgycg~gdSckFlh~r~Dy 213 (313)
T KOG1813|consen 184 YQPDICKDYKETGYCGYGDSCKFLHDRSDY 213 (313)
T ss_pred cCchhhhhhHhhCcccccchhhhhhhhhhc
Confidence 666799999999999999999999976654
No 453
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=47.86 E-value=35 Score=37.22 Aligned_cols=58 Identities=24% Similarity=0.234 Sum_probs=41.3
Q ss_pred HHHHHHHhhhcc-ceeeEeeccCC-----ccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 179 SDNLKKFLADHG-ILYKSAKKKKG-----MTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 179 ~~~Lkklf~~~~-v~~~~i~~~r~-----~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
+++.+.-+++|| |.-+-|.-..+ ----||.|...|+|-+|+--|||.-|+||.+++..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 456677778885 33222222211 12369999999999999999999999999987653
No 454
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=47.05 E-value=40 Score=37.83 Aligned_cols=48 Identities=21% Similarity=0.289 Sum_probs=37.6
Q ss_pred hhccCCCCCeEEEecCCc-CHHHHHHhhhC--CEEEEEeCCHHHHHHHHHH
Q 003969 595 DWADLGPDTLLFDVCCGT-GTIGLTLAHRV--GMVIGIEMNASAVSDAHRN 642 (783)
Q Consensus 595 ~~l~~~~g~~VLDLgCGt-Gti~l~LA~~~--~~VigVE~s~~AIe~Ak~N 642 (783)
....+.++.+||.+|||. |.+++.+|+.. .+|++++.+++..+.++..
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 445566788999998876 77777777764 3699999999988888764
No 455
>PLN02540 methylenetetrahydrofolate reductase
Probab=46.62 E-value=51 Score=39.49 Aligned_cols=80 Identities=21% Similarity=0.335 Sum_probs=60.7
Q ss_pred cccCC-HHHHHHHHHHHhhhccCCCCCeEEEecCCcCH----HHHHHhhh---------CCEEEEEeCCHHHHHHHHHHH
Q 003969 578 FFQVN-TLAAEKLYSLGGDWADLGPDTLLFDVCCGTGT----IGLTLAHR---------VGMVIGIEMNASAVSDAHRNA 643 (783)
Q Consensus 578 FfQvN-~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGt----i~l~LA~~---------~~~VigVE~s~~AIe~Ak~Na 643 (783)
||... ....+.|+..+-++.... -..+++--|.|. .++.++.. +.++++.+.+..+|..+...+
T Consensus 5 fFPPKt~~g~~nL~~~~~rl~~~~--P~FisVT~gAgGst~~~Tl~la~~lq~~~Gie~i~HLTCrd~n~~~L~~~L~~a 82 (565)
T PLN02540 5 FFPPKTEEGVDNLFERMDRMVAHG--PLFCDITWGAGGSTADLTLDIANRMQNMICVETMMHLTCTNMPVEKIDHALETI 82 (565)
T ss_pred EECCCCchHHHHHHHHHHHHhccC--CCEEEeCCCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHH
Confidence 34444 345888999888887654 467888888774 23444432 148999999999999999999
Q ss_pred HHcCCCcEEEEEccHH
Q 003969 644 EINGIKNCRFVCAKAE 659 (783)
Q Consensus 644 ~~ngl~nv~f~~gDae 659 (783)
...|+.||=.+.||--
T Consensus 83 ~~~GIrNILALrGDpp 98 (565)
T PLN02540 83 KSNGIQNILALRGDPP 98 (565)
T ss_pred HHCCCCEEEEECCCCC
Confidence 9999999999999854
No 456
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=46.17 E-value=1.2e+02 Score=37.01 Aligned_cols=37 Identities=19% Similarity=0.074 Sum_probs=26.1
Q ss_pred CCeEEEecCCcCHHHHHHhhhC--------------CEEEEEeCCHHHHHH
Q 003969 602 DTLLFDVCCGTGTIGLTLAHRV--------------GMVIGIEMNASAVSD 638 (783)
Q Consensus 602 g~~VLDLgCGtGti~l~LA~~~--------------~~VigVE~s~~AIe~ 638 (783)
.-+|+|+|=|+|...+.+.+.. -+++++|..|-..++
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~ 108 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRAD 108 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHH
Confidence 3589999999999777655321 278999986643333
No 457
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=45.59 E-value=7.6 Score=42.90 Aligned_cols=74 Identities=15% Similarity=0.310 Sum_probs=51.3
Q ss_pred cEEEeCCCcccCHHHHH---HHhhhccceeeEeec-cCC----c-c--EEEEEeCCHHHHHHHHHHHcCCccCCceeEEE
Q 003969 167 SKCLVHLPRKWHSDNLK---KFLADHGILYKSAKK-KKG----M-T--VGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235 (783)
Q Consensus 167 ~i~V~nLp~~~~~~~Lk---klf~~~~v~~~~i~~-~r~----~-g--fgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~ 235 (783)
.+||-+|+.....+.+- +.|.+||.....++. +.+ - + -++|||..+|+|..||...+|+...|+.|++.
T Consensus 79 lvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~ 158 (327)
T KOG2068|consen 79 LVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKAS 158 (327)
T ss_pred hhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHh
Confidence 47788888776655543 344455432222222 221 1 1 26999999999999999999999999999988
Q ss_pred ecCCC
Q 003969 236 NVVPR 240 (783)
Q Consensus 236 ~A~pr 240 (783)
....+
T Consensus 159 ~gttk 163 (327)
T KOG2068|consen 159 LGTTK 163 (327)
T ss_pred hCCCc
Confidence 77665
No 458
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=45.56 E-value=29 Score=31.65 Aligned_cols=46 Identities=26% Similarity=0.420 Sum_probs=34.6
Q ss_pred cCCcCHHHHHHhhh---CC-EEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 609 CCGTGTIGLTLAHR---VG-MVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 609 gCGtGti~l~LA~~---~~-~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
=||.|.+|..+++. .. .|+.||.+++.++.++.. + +.++.||..+.
T Consensus 3 I~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~---~~~i~gd~~~~ 52 (116)
T PF02254_consen 3 IIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G---VEVIYGDATDP 52 (116)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T---SEEEES-TTSH
T ss_pred EEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c---cccccccchhh
Confidence 38999999988865 24 899999999998887643 3 56899998764
No 459
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=44.71 E-value=39 Score=36.71 Aligned_cols=41 Identities=15% Similarity=0.078 Sum_probs=36.1
Q ss_pred CCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHR 641 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~ 641 (783)
...+||=-|||.|.++..+|..+-.|.|.|.|--|+-...-
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~f 96 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNF 96 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHH
Confidence 45789999999999999999999899999999999655543
No 460
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=43.69 E-value=9.6 Score=39.54 Aligned_cols=40 Identities=18% Similarity=0.158 Sum_probs=29.7
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 003969 6 TETLNLPPPINGQDSTSHNEPLQNADDEQIQPSIPQSTDD 45 (783)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (783)
..|+.-|-++|..-|-..|...++-+|++++|.+-.++..
T Consensus 38 kntrsypysvsrnysfilnksnrskstaasppyvipstss 77 (377)
T KOG1492|consen 38 KNTRSYPYSVSRNYSFILNKSNRSKSTAASPPYVIPSTSS 77 (377)
T ss_pred CCCccCCceeccceeeeeccccccccccCCCCeeccCCCC
Confidence 3466777788888888888888888999999885544443
No 461
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=42.36 E-value=28 Score=37.38 Aligned_cols=62 Identities=19% Similarity=0.237 Sum_probs=49.2
Q ss_pred cEEEeCCCcccCHHHHHHHhhhccceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccC
Q 003969 167 SKCLVHLPRKWHSDNLKKFLADHGILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIG 228 (783)
Q Consensus 167 ~i~V~nLp~~~~~~~Lkklf~~~~v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~ 228 (783)
.+||.||+.++.-+.|..-|..++-....|.+ ++..+=|+|.|...-.+.+|....+---|.
T Consensus 33 ~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~ 98 (275)
T KOG0115|consen 33 ELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFG 98 (275)
T ss_pred eEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccc
Confidence 49999999999999999999999644433333 566688999999999999999988543333
No 462
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=42.29 E-value=38 Score=35.98 Aligned_cols=43 Identities=9% Similarity=0.105 Sum_probs=32.7
Q ss_pred CCeEEEecCCcCHHHHHHhhhC----------CEEEEEeCCHHHHHHHHHHHH
Q 003969 602 DTLLFDVCCGTGTIGLTLAHRV----------GMVIGIEMNASAVSDAHRNAE 644 (783)
Q Consensus 602 g~~VLDLgCGtGti~l~LA~~~----------~~VigVE~s~~AIe~Ak~Na~ 644 (783)
.-+|+++|+|.|+++.-+.+.. -+++-||.++...+.-++.+.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~ 71 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLS 71 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhh
Confidence 3689999999999998776532 379999999998887777754
No 463
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=41.53 E-value=36 Score=39.79 Aligned_cols=66 Identities=14% Similarity=0.075 Sum_probs=49.0
Q ss_pred CCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHHh
Q 003969 602 DTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLK 667 (783)
Q Consensus 602 g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~~l~~ 667 (783)
+..+|=+|=|.|.++.+|.... ..+++||++|+|++.|+.+.....-....++..|..+++.+..+
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k 363 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAK 363 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhh
Confidence 3456777777788888777653 69999999999999999986543333456666777777776655
No 464
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=40.95 E-value=60 Score=35.87 Aligned_cols=58 Identities=14% Similarity=0.119 Sum_probs=34.9
Q ss_pred CeEEEecCCcCHHHHHHhhh----CCEEEEEeCCHHHHHHHHHHH-H---HcCCCcEEEEEccHHHH
Q 003969 603 TLLFDVCCGTGTIGLTLAHR----VGMVIGIEMNASAVSDAHRNA-E---INGIKNCRFVCAKAEDV 661 (783)
Q Consensus 603 ~~VLDLgCGtGti~l~LA~~----~~~VigVE~s~~AIe~Ak~Na-~---~ngl~nv~f~~gDaed~ 661 (783)
++||=. .|+|.+|..|.+. ..+|+++|............. . .....++.|+.+|+.+.
T Consensus 16 ~~vlVt-GatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~ 81 (348)
T PRK15181 16 KRWLIT-GVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKF 81 (348)
T ss_pred CEEEEE-CCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCH
Confidence 556544 5789999877765 358999997543222111111 1 11224688999998763
No 465
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=40.77 E-value=21 Score=40.25 Aligned_cols=62 Identities=11% Similarity=0.267 Sum_probs=49.4
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhc--cceeeEee---cc---CCccEEEEEeCCHHHHHHHHHHHcCCcc
Q 003969 166 LSKCLVHLPRKWHSDNLKKFLADH--GILYKSAK---KK---KGMTVGFVKFESVEQLKNAVEELEGISI 227 (783)
Q Consensus 166 ~~i~V~nLp~~~~~~~Lkklf~~~--~v~~~~i~---~~---r~~gfgFVtF~s~Eea~kAIe~LnG~~~ 227 (783)
.++.|.+||.+.+..+|-.-+..+ .+....-. .+ .-++++||.|.++++.....+-++|+.|
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 478999999999999998888877 34433333 21 2258999999999999999999999986
No 466
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=40.50 E-value=50 Score=37.10 Aligned_cols=46 Identities=22% Similarity=0.265 Sum_probs=36.7
Q ss_pred ccCCCCCeEEEecCC-cCHHHHHHhhh-CCEEEEEeCCHHHHHHHHHH
Q 003969 597 ADLGPDTLLFDVCCG-TGTIGLTLAHR-VGMVIGIEMNASAVSDAHRN 642 (783)
Q Consensus 597 l~~~~g~~VLDLgCG-tGti~l~LA~~-~~~VigVE~s~~AIe~Ak~N 642 (783)
....+|..|+=.|+| .|.+++.+|+. +.+|+++|.+++-.++|++-
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~l 209 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKL 209 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHh
Confidence 466778877766665 67788888884 68999999999999998853
No 467
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=40.43 E-value=1.5e+02 Score=32.08 Aligned_cols=85 Identities=16% Similarity=0.170 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC------CEEEEEeCCHHHHHHHHHHHHH--cCCCcEE
Q 003969 581 VNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV------GMVIGIEMNASAVSDAHRNAEI--NGIKNCR 652 (783)
Q Consensus 581 vN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~------~~VigVE~s~~AIe~Ak~Na~~--ngl~nv~ 652 (783)
+.+-.+..|-..+.+.+....+..++|||+|+-+-+..|.... .+.+.||++..-++.....+.. .++ .+.
T Consensus 58 pTRtEaaIl~~~a~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l-~v~ 136 (321)
T COG4301 58 PTRTEAAILQARAAEIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGL-EVN 136 (321)
T ss_pred CchhHHHHHHHHHHHHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCC-eEe
Confidence 3344455555566666667778999999999999887665432 5789999999877654443332 133 377
Q ss_pred EEEccHHHHHHHHH
Q 003969 653 FVCAKAEDVMGSLL 666 (783)
Q Consensus 653 f~~gDaed~l~~l~ 666 (783)
-+++|.+..+..+.
T Consensus 137 ~l~~~~~~~La~~~ 150 (321)
T COG4301 137 ALCGDYELALAELP 150 (321)
T ss_pred ehhhhHHHHHhccc
Confidence 78888888776554
No 468
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=40.38 E-value=31 Score=37.76 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=25.2
Q ss_pred EEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 205 GFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 205 gFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
|||||++..+|+.|.+.+.... ++.++|..|
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~A 31 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPA 31 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeC
Confidence 7999999999999999766653 466677766
No 469
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=38.60 E-value=36 Score=36.93 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=17.4
Q ss_pred HhhhccCCC-CCeEEEecCCcCHHHH
Q 003969 593 GGDWADLGP-DTLLFDVCCGTGTIGL 617 (783)
Q Consensus 593 i~~~l~~~~-g~~VLDLgCGtGti~l 617 (783)
+++++...+ ...|.|+|||-+-|+.
T Consensus 171 ii~~ik~r~~~~vIaD~GCGEakiA~ 196 (325)
T KOG3045|consen 171 IIRKIKRRPKNIVIADFGCGEAKIAS 196 (325)
T ss_pred HHHHHHhCcCceEEEecccchhhhhh
Confidence 344443333 3579999999999886
No 470
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=38.30 E-value=65 Score=35.49 Aligned_cols=58 Identities=16% Similarity=0.255 Sum_probs=48.1
Q ss_pred CCCeEEEecCCcC---HHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 601 PDTLLFDVCCGTG---TIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 601 ~g~~VLDLgCGtG---ti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
.|..||==|.|.| .+++.+|+++.+++.+|++.+..+...+.++.+| .+..+..|+.+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g--~~~~y~cdis~ 97 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG--EAKAYTCDISD 97 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC--ceeEEEecCCC
Confidence 4778888888887 4777888888899999999999999999888776 68888877744
No 471
>PRK07102 short chain dehydrogenase; Provisional
Probab=35.81 E-value=1.1e+02 Score=31.52 Aligned_cols=57 Identities=11% Similarity=0.010 Sum_probs=40.7
Q ss_pred eEEEecCCcCHHHHHHhhh----CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 604 LLFDVCCGTGTIGLTLAHR----VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 604 ~VLDLgCGtGti~l~LA~~----~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
++|=. .|+|.+|..+++. +.+|++++.+++..+....++...+-.++.++.+|+.+.
T Consensus 3 ~vlIt-Gas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 63 (243)
T PRK07102 3 KILII-GATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDT 63 (243)
T ss_pred EEEEE-cCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCCh
Confidence 45644 4678888877665 468999999998776666555444445789999988654
No 472
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=35.10 E-value=87 Score=34.59 Aligned_cols=47 Identities=11% Similarity=0.134 Sum_probs=40.1
Q ss_pred cCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHH
Q 003969 598 DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAE 644 (783)
Q Consensus 598 ~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~ 644 (783)
.+..|.+|+-+|+|...+--.|++.-.+|.+||+++.-|..-+-.+.
T Consensus 60 ~~g~ghrivtigSGGcn~L~ylsr~Pa~id~VDlN~ahiAln~lkla 106 (414)
T COG5379 60 QLGIGHRIVTIGSGGCNMLAYLSRAPARIDVVDLNPAHIALNRLKLA 106 (414)
T ss_pred hcCCCcEEEEecCCcchHHHHhhcCCceeEEEeCCHHHHHHHHHHHH
Confidence 45678899999999998988999999999999999998887665543
No 473
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=34.26 E-value=80 Score=35.30 Aligned_cols=41 Identities=22% Similarity=0.353 Sum_probs=33.4
Q ss_pred CCCeEEEecCC-cCHHHHHHhhhC--CEEEEEeCCHHHHHHHHH
Q 003969 601 PDTLLFDVCCG-TGTIGLTLAHRV--GMVIGIEMNASAVSDAHR 641 (783)
Q Consensus 601 ~g~~VLDLgCG-tGti~l~LA~~~--~~VigVE~s~~AIe~Ak~ 641 (783)
.+.+|+=+||| .|.+++.+++.. .+|+.+|.+++-++.|++
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 34489999988 466667777764 799999999999999987
No 474
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=34.04 E-value=91 Score=35.14 Aligned_cols=49 Identities=18% Similarity=0.250 Sum_probs=36.1
Q ss_pred HhhhccCCCCCeEEEecCC-cCHHHHHHhhh--CCEEEEEeCCHHHHHHHHH
Q 003969 593 GGDWADLGPDTLLFDVCCG-TGTIGLTLAHR--VGMVIGIEMNASAVSDAHR 641 (783)
Q Consensus 593 i~~~l~~~~g~~VLDLgCG-tGti~l~LA~~--~~~VigVE~s~~AIe~Ak~ 641 (783)
+..-+...+|..|.=+||| .|.-++.-|+. +.++++||++++-.++|++
T Consensus 177 v~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~ 228 (366)
T COG1062 177 VVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK 228 (366)
T ss_pred hhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh
Confidence 3444566788888888776 45555555554 4799999999999999875
No 475
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=33.65 E-value=74 Score=34.89 Aligned_cols=31 Identities=26% Similarity=0.702 Sum_probs=27.0
Q ss_pred cccccccccccccccCCCCCCCccccCcCccC
Q 003969 80 LHKTSLCSYFRKVGTCCHGSTCRYAHGEEELR 111 (783)
Q Consensus 80 ~~kt~~c~~~~~~~~c~~g~~c~~ahg~~elr 111 (783)
.+-.-.|++|.+ |.|+.|..|.|.|+..=++
T Consensus 101 ~~s~V~c~~~~~-g~c~s~~~c~~lh~~d~~~ 131 (285)
T COG5084 101 LSSSVVCKFFLR-GLCKSGFSCEFLHEYDLRS 131 (285)
T ss_pred ccCCcccchhcc-ccCcCCCccccccCCCccc
Confidence 578889999966 8999999999999987555
No 476
>PF05575 V_cholerae_RfbT: Vibrio cholerae RfbT protein; InterPro: IPR008890 This family consists of several RfbT proteins from Vibrio cholerae. It has been found that genetic alteration of the rfbT gene is responsible for serotype conversion of V. cholerae O1 [] and determines the difference between the Ogawa and Inaba serotypes, in that the presence of rfbT is sufficient for Inaba-to-Ogawa serotype conversion [].
Probab=33.28 E-value=28 Score=35.14 Aligned_cols=57 Identities=21% Similarity=0.242 Sum_probs=46.1
Q ss_pred HHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcC
Q 003969 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEING 647 (783)
Q Consensus 589 L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ng 647 (783)
+..|+...+. .+++-+|+|+.+|+|.-..|++. ++++++|.-.+|-...+.|.+.|+
T Consensus 69 mrhwivnhck--hdttyidiganvgtfcgiaarhitqgkiiaiepltemensirmnvqlnn 127 (286)
T PF05575_consen 69 MRHWIVNHCK--HDTTYIDIGANVGTFCGIAARHITQGKIIAIEPLTEMENSIRMNVQLNN 127 (286)
T ss_pred hhHhhhhhcc--CCceEEEeccccccchhhhhhhcccCceEEEechhhhhhheeeeeeeCC
Confidence 4456666553 56789999999999988888774 799999999999888888887665
No 477
>PLN00016 RNA-binding protein; Provisional
Probab=33.21 E-value=1.1e+02 Score=34.33 Aligned_cols=58 Identities=16% Similarity=0.094 Sum_probs=35.1
Q ss_pred CeEEEe---cCCcCHHHHHHhhh----CCEEEEEeCCHHHHHHHHH----HHHHcCCCcEEEEEccHHH
Q 003969 603 TLLFDV---CCGTGTIGLTLAHR----VGMVIGIEMNASAVSDAHR----NAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 603 ~~VLDL---gCGtGti~l~LA~~----~~~VigVE~s~~AIe~Ak~----Na~~ngl~nv~f~~gDaed 660 (783)
.+||=+ +.|+|.+|..|++. +..|+++..+......... ......-.+++++.+|+.+
T Consensus 53 ~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d 121 (378)
T PLN00016 53 KKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPAD 121 (378)
T ss_pred ceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHH
Confidence 467744 26899999887764 4689999987654221110 0000001247899999987
No 478
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.32 E-value=1.2e+02 Score=36.16 Aligned_cols=72 Identities=21% Similarity=0.253 Sum_probs=55.1
Q ss_pred CccccEEEeCCCcc-cCHHHHHHHhhhc---c--ceeeEeec---cC---------------------------------
Q 003969 163 DVELSKCLVHLPRK-WHSDNLKKFLADH---G--ILYKSAKK---KK--------------------------------- 200 (783)
Q Consensus 163 ~~~~~i~V~nLp~~-~~~~~Lkklf~~~---~--v~~~~i~~---~r--------------------------------- 200 (783)
...-+|-|.||-|. +..++|-.+|+.| | |.+++|-. |+
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 34568999999997 7899999999988 3 33344322 21
Q ss_pred ---------------CccEEEEEeCCHHHHHHHHHHHcCCccCCceeEE
Q 003969 201 ---------------GMTVGFVKFESVEQLKNAVEELEGISIGNKTLKV 234 (783)
Q Consensus 201 ---------------~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V 234 (783)
.--||.|+|.+.+.|.+..+.-+|.+|....+++
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~ 300 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKL 300 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecccccee
Confidence 1158999999999999999999999998765443
No 479
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=31.38 E-value=57 Score=34.13 Aligned_cols=57 Identities=18% Similarity=0.280 Sum_probs=33.9
Q ss_pred CCeEEEecCCcCHHHHHHhhh---C---CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHH
Q 003969 602 DTLLFDVCCGTGTIGLTLAHR---V---GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAED 660 (783)
Q Consensus 602 g~~VLDLgCGtGti~l~LA~~---~---~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gDaed 660 (783)
...|+++|.--|.-.+.+|.. . ++|+|||++........... ..+ .+|+|+.||..+
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~--hp~~~rI~~i~Gds~d 96 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIES--HPMSPRITFIQGDSID 96 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG------TTEEEEES-SSS
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhh--ccccCceEEEECCCCC
Confidence 368999999999999888753 2 79999999654432222211 122 579999998754
No 480
>PRK07904 short chain dehydrogenase; Provisional
Probab=31.36 E-value=1.3e+02 Score=31.63 Aligned_cols=59 Identities=17% Similarity=0.186 Sum_probs=41.0
Q ss_pred CCCeEEEecCCcCHHHHHHhhh----C-CEEEEEeCCHHH-HHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHR----V-GMVIGIEMNASA-VSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~----~-~~VigVE~s~~A-Ie~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
.+.+||=.|+ +|.+|..+++. + .+|+.++.+++. ++.+.+.+...+..++.++.+|+.+
T Consensus 7 ~~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~ 71 (253)
T PRK07904 7 NPQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALD 71 (253)
T ss_pred CCcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCC
Confidence 4556776665 67888877754 2 589999988764 6655555555554478999998754
No 481
>PRK11524 putative methyltransferase; Provisional
Probab=31.01 E-value=87 Score=33.94 Aligned_cols=32 Identities=22% Similarity=0.217 Sum_probs=21.6
Q ss_pred eEEEECCCCC-CCc-----------------HHHHHHHHhccCCCcEEEe
Q 003969 751 VVAIVDPPRG-GLH-----------------PTVIKILRTHARLQRLLHI 782 (783)
Q Consensus 751 ~v~ivDPPR~-Gl~-----------------~~vi~~lr~~~~~~rlvYV 782 (783)
++||.|||-. |-. ..++..+++..+....+||
T Consensus 29 DlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i 78 (284)
T PRK11524 29 DLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYI 78 (284)
T ss_pred cEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 7999999953 111 3466777666677777776
No 482
>PF08098 ATX_III: Anemonia sulcata toxin III family; InterPro: IPR012509 This entry occurs within the Anemonia sulcata toxin III (ATX III) neurotoxin family. ATX III is a neurotoxin that is produced by sea anemone; it adopts a compact structure containing four reverse turns and two other chain reversals, but no regular alpha-helix or beta-sheet. A hydrophobic patch found on the surface of the peptide may constitute part of the sodium channel binding surface [].; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0042151 nematocyst; PDB: 1ANS_A.
Probab=30.99 E-value=25 Score=24.36 Aligned_cols=16 Identities=38% Similarity=1.065 Sum_probs=7.6
Q ss_pred cccccccccccCCCCCCCc
Q 003969 84 SLCSYFRKVGTCCHGSTCR 102 (783)
Q Consensus 84 ~~c~~~~~~~~c~~g~~c~ 102 (783)
.+|.++ |.|+.|..|.
T Consensus 7 amc~~~---~gC~WGQ~~~ 22 (27)
T PF08098_consen 7 AMCKYT---GGCPWGQNCY 22 (27)
T ss_dssp ----TT---TT-SSS-SS-
T ss_pred ccceee---cCCccccccc
Confidence 577777 6799999885
No 483
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=30.95 E-value=48 Score=33.75 Aligned_cols=49 Identities=24% Similarity=0.432 Sum_probs=28.0
Q ss_pred CcCHHHHHHh----hhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHH
Q 003969 611 GTGTIGLTLA----HRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLL 666 (783)
Q Consensus 611 GtGti~l~LA----~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~~l~ 666 (783)
|.|.+|+++| +.+.+|+|+|++++-++..+ +|. ..|..-.+.+++....
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~-----~g~--~p~~E~~l~~ll~~~~ 59 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALN-----NGE--LPIYEPGLDELLKENV 59 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHH-----TTS--SSS-CTTHHHHHHHHH
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHh-----hcc--ccccccchhhhhcccc
Confidence 7777777655 45679999999999776654 233 2334455666665544
No 484
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=30.93 E-value=57 Score=40.58 Aligned_cols=72 Identities=17% Similarity=0.254 Sum_probs=58.6
Q ss_pred cEEEeCCCcccCHHHHHHHhhhccceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCC--ceeEEEecCC
Q 003969 167 SKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN--KTLKVANVVP 239 (783)
Q Consensus 167 ~i~V~nLp~~~~~~~Lkklf~~~~v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~G--r~L~V~~A~p 239 (783)
++.+++|+....-..|.+.|..||.... |-...+..|++|.+.+...++.|+..|-|..+.| +.|+|..|.+
T Consensus 457 r~~sgglg~w~p~~~l~r~fd~fGpir~-Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 457 RLQSGGLGPWSPVSRLNREFDRFGPIRI-IDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred eeccCCCCCCChHHHHHHHhhccCccee-eecccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccC
Confidence 5888999877778889999999973211 2235667899999999999999999999999998 5788887754
No 485
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=30.34 E-value=3e+02 Score=28.63 Aligned_cols=53 Identities=13% Similarity=0.062 Sum_probs=32.3
Q ss_pred CCeEEEecCCcCHHHHHHhhh----CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 602 DTLLFDVCCGTGTIGLTLAHR----VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 602 g~~VLDLgCGtGti~l~LA~~----~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
+++||=+ .++|.+|..+++. ...|+++--+++...... ..-.+++++.+|+.+
T Consensus 17 ~~~ilIt-GasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-----~~~~~~~~~~~Dl~d 73 (251)
T PLN00141 17 TKTVFVA-GATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSL-----PQDPSLQIVRADVTE 73 (251)
T ss_pred CCeEEEE-CCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhc-----ccCCceEEEEeeCCC
Confidence 4566655 4567777777654 458888876665432111 111358899999876
No 486
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=30.06 E-value=95 Score=33.56 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=33.2
Q ss_pred HHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC-------CEEEEEeCCH
Q 003969 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-------GMVIGIEMNA 633 (783)
Q Consensus 589 L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~-------~~VigVE~s~ 633 (783)
|...+.+.--+.++..++|+|||-|.++..++... ..++.||-..
T Consensus 6 li~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 6 LIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred HHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 44444444334567799999999999999998764 3788999843
No 487
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=29.53 E-value=1.1e+02 Score=26.41 Aligned_cols=61 Identities=28% Similarity=0.388 Sum_probs=44.2
Q ss_pred eCCCcccCHHHHHHHhhh-ccc--eeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEE
Q 003969 171 VHLPRKWHSDNLKKFLAD-HGI--LYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKV 234 (783)
Q Consensus 171 ~nLp~~~~~~~Lkklf~~-~~v--~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V 234 (783)
-.++..++..+|+..+.+ ++. ....++....-| -.|++.+.++.+.|++..+-. +++.|++
T Consensus 16 ~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dg-D~V~i~sd~Dl~~a~~~~~~~--~~~~lrl 79 (84)
T PF00564_consen 16 ISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDEDG-DLVTISSDEDLQEAIEQAKES--GSKTLRL 79 (84)
T ss_dssp EEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEETTS-SEEEESSHHHHHHHHHHHHHC--TTSCEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCCCC-CEEEeCCHHHHHHHHHHHHhc--CCCcEEE
Confidence 567778899999988885 465 344444433334 689999999999999999876 4445544
No 488
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=29.09 E-value=38 Score=36.51 Aligned_cols=45 Identities=9% Similarity=0.096 Sum_probs=31.5
Q ss_pred CCCCeEEEecCCcCHHHH-HHhhhCCEEEEEeCCHHHHHHHHHHHH
Q 003969 600 GPDTLLFDVCCGTGTIGL-TLAHRVGMVIGIEMNASAVSDAHRNAE 644 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l-~LA~~~~~VigVE~s~~AIe~Ak~Na~ 644 (783)
.+|.++||+|||.-..-+ .++..+..|+..|..+...+..++=++
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~ 100 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLR 100 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHT
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHC
Confidence 357799999999854433 334557899999999999988776543
No 489
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=28.48 E-value=90 Score=34.07 Aligned_cols=54 Identities=20% Similarity=0.298 Sum_probs=0.0
Q ss_pred CCcEEEEEccHHHHHHHHHhhhcCCCcccccccccCCchhhhhhhhccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCC
Q 003969 648 IKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRDNVPENEGCSGQDPENDIADSNCPEGSGK 727 (783)
Q Consensus 648 l~nv~f~~gDaed~l~~l~~~~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (783)
+.+++|.|+|..+++.....
T Consensus 154 l~~~~i~~~df~~v~~~a~~------------------------------------------------------------ 173 (274)
T COG0338 154 LKNATIENGDFEEVLADADS------------------------------------------------------------ 173 (274)
T ss_pred HhcCeEEcCCHHHHHhhccC------------------------------------------------------------
Q ss_pred CCccccccccccCCCCCCCCCCceEEEECCCCCCC------------------cHHHHHHHHhccCCCcEEEeC
Q 003969 728 EPQSQLQKDCTSEGNSLAQPFKNVVAIVDPPRGGL------------------HPTVIKILRTHARLQRLLHIM 783 (783)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~f~~~v~ivDPPR~Gl------------------~~~vi~~lr~~~~~~rlvYV~ 783 (783)
+++++.+|||..++ |......+..+ ..+++|++|
T Consensus 174 ---------------------~~dfvY~DPPY~~~s~t~~f~~Y~~~~f~~~~~~~La~~~~~l-~~~~~i~~~ 225 (274)
T COG0338 174 ---------------------GDDFVYCDPPYLPLSATSNFTAYGGNGFTEDQHLRLAEVLKEL-EGKRGISVL 225 (274)
T ss_pred ---------------------CCcEEEeCCCCCccccccccccccCCCCChHHHHHHHHHHHhc-cccceEEEe
No 490
>PRK06194 hypothetical protein; Provisional
Probab=28.27 E-value=1.7e+02 Score=30.81 Aligned_cols=57 Identities=14% Similarity=0.144 Sum_probs=39.8
Q ss_pred CCeEEEecCCcCHHHHHHhhh----CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 602 DTLLFDVCCGTGTIGLTLAHR----VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 602 g~~VLDLgCGtGti~l~LA~~----~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
+.++| +-.|+|.+|..+++. +.+|+.++.+.+.++.+...+...+. ++.++.+|+.+
T Consensus 6 ~k~vl-VtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~d 66 (287)
T PRK06194 6 GKVAV-ITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGA-EVLGVRTDVSD 66 (287)
T ss_pred CCEEE-EeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCC-eEEEEECCCCC
Confidence 45666 656778888877654 56899999988776665554443333 58888998854
No 491
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=27.69 E-value=70 Score=36.34 Aligned_cols=71 Identities=13% Similarity=0.121 Sum_probs=55.3
Q ss_pred cEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec--c-----CCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 003969 167 SKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK--K-----KGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 167 ~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~--~-----r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
-|.|-||...++-+++..||+-+| |...++.- + -..-.+||-|.+...+.. .+.|-+..|=++.|-|..+.
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~v-aQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTV-AQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeH-HhhhccceeeeeeEEEEecC
Confidence 599999999999999999999885 55444433 1 223578999988776654 47888899999999887663
No 492
>PRK07326 short chain dehydrogenase; Provisional
Probab=27.52 E-value=1.6e+02 Score=29.81 Aligned_cols=56 Identities=16% Similarity=0.123 Sum_probs=39.0
Q ss_pred CCeEEEecCCcCHHHHHHhhh----CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 602 DTLLFDVCCGTGTIGLTLAHR----VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 602 g~~VLDLgCGtGti~l~LA~~----~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
+..||=.| |+|.+|..+++. +.+|++++.++.....+....... ..+.++.+|+.+
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~D~~~ 65 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK--GNVLGLAADVRD 65 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc--CcEEEEEccCCC
Confidence 45677666 688888887754 468999999887766655544322 457888888654
No 493
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=27.42 E-value=39 Score=36.62 Aligned_cols=35 Identities=17% Similarity=0.317 Sum_probs=30.3
Q ss_pred CCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNAS 634 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~ 634 (783)
..+..+-||++|||.+|-.+-+.+..|++=|+--.
T Consensus 26 ~s~k~f~DiFaGtGVV~~~fkk~~n~iiaNDle~y 60 (330)
T COG3392 26 LSGKIFCDIFAGTGVVGRFFKKAGNKIIANDLEYY 60 (330)
T ss_pred cCCCeeeeeccCccHHHHHHHHhcchhhhchHHHH
Confidence 45678999999999999999999999999887443
No 494
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=26.74 E-value=21 Score=44.20 Aligned_cols=74 Identities=22% Similarity=0.247 Sum_probs=61.0
Q ss_pred cEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 003969 167 SKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (783)
Q Consensus 167 ~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr 240 (783)
.+++|||+-.+++.+++-.|..+| |..+.|+. +..-.||||-|-+-..+-.|--.|-|..+..-.+++..-+++
T Consensus 374 TLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~k 451 (975)
T KOG0112|consen 374 TLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQPK 451 (975)
T ss_pred hhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccccc
Confidence 599999999999999999999996 56666665 455689999999999999999999998887666666555443
No 495
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=26.48 E-value=2.2e+02 Score=29.21 Aligned_cols=57 Identities=14% Similarity=0.073 Sum_probs=40.5
Q ss_pred CCCeEEEecCCcCHHHHHHhhh----CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHR----VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~----~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDa 658 (783)
++.+||=.| |+|.+|..+++. +.+|++++.+.+.++.....+...+..++.++.+|+
T Consensus 11 ~~k~vlItG-~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~ 71 (247)
T PRK08945 11 KDRIILVTG-AGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDL 71 (247)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecc
Confidence 456666665 678888877654 469999999998877766666555545567777666
No 496
>PRK12939 short chain dehydrogenase; Provisional
Probab=26.39 E-value=2e+02 Score=29.34 Aligned_cols=57 Identities=16% Similarity=0.109 Sum_probs=40.8
Q ss_pred CCeEEEecCCcCHHHHHHhhh----CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 602 DTLLFDVCCGTGTIGLTLAHR----VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 602 g~~VLDLgCGtGti~l~LA~~----~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
+.++| +-.|+|.+|..+++. +.+|++++.+++.+......++..+ .++.++.+|+.+
T Consensus 7 ~~~vl-ItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~ 67 (250)
T PRK12939 7 GKRAL-VTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG-GRAHAIAADLAD 67 (250)
T ss_pred CCEEE-EeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCC
Confidence 45666 666789999988765 4689999998887776655544323 368889888854
No 497
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.99 E-value=1.3e+02 Score=33.70 Aligned_cols=49 Identities=16% Similarity=0.283 Sum_probs=34.1
Q ss_pred HhhhccCCCCCeEEEecCCcCHHHHHH-hhh--CCEEEEEeCCHHHHHHHHH
Q 003969 593 GGDWADLGPDTLLFDVCCGTGTIGLTL-AHR--VGMVIGIEMNASAVSDAHR 641 (783)
Q Consensus 593 i~~~l~~~~g~~VLDLgCGtGti~l~L-A~~--~~~VigVE~s~~AIe~Ak~ 641 (783)
+...+...+|.++.=+|+|.=.++... ++. +.+++|||++++-.+.|++
T Consensus 184 a~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 184 AWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred hhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh
Confidence 445567778988888877643333322 232 3699999999999888874
No 498
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=25.43 E-value=1.6e+02 Score=31.50 Aligned_cols=46 Identities=15% Similarity=0.271 Sum_probs=32.7
Q ss_pred hccCCCCCeEEEecCC-cCHHHHHHhhh-CCEEEEEeCCHHHHHHHHH
Q 003969 596 WADLGPDTLLFDVCCG-TGTIGLTLAHR-VGMVIGIEMNASAVSDAHR 641 (783)
Q Consensus 596 ~l~~~~g~~VLDLgCG-tGti~l~LA~~-~~~VigVE~s~~AIe~Ak~ 641 (783)
...+..+.+||..++| +|...+.+|+. +.+|++++.+++..+.++.
T Consensus 160 ~~~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 160 AGEVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE 207 (338)
T ss_pred ccCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 3445667788887765 46666666765 4589999999988777653
No 499
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=25.39 E-value=57 Score=34.04 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=31.3
Q ss_pred hhhccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCC
Q 003969 594 GDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMN 632 (783)
Q Consensus 594 ~~~l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s 632 (783)
+.+.++.+|.+|+|+.-|.|.++..|+... ++|+++=-.
T Consensus 41 L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~ 82 (238)
T COG4798 41 LAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPA 82 (238)
T ss_pred eEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecch
Confidence 445677899999999999999999998774 477776443
No 500
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=25.04 E-value=1.5e+02 Score=31.76 Aligned_cols=43 Identities=9% Similarity=0.221 Sum_probs=30.4
Q ss_pred CeEEEECCCccccCCHH-HHHHHHHHHhhhccCCCCCeEEEecCCcC
Q 003969 568 NLRFCISPTAFFQVNTL-AAEKLYSLGGDWADLGPDTLLFDVCCGTG 613 (783)
Q Consensus 568 gl~f~isp~sFfQvN~~-~ae~L~~~i~~~l~~~~g~~VLDLgCGtG 613 (783)
|. +.++|.+||+.-.. ..+.+...+.+++. .|..++|+|+++.
T Consensus 5 Gi-lN~t~dsf~~~~~~~~~~~~~~~a~~~~~--~GAdiIDvG~~st 48 (258)
T cd00423 5 GI-LNVTPDSFSDGGKFLSLDKALEHARRMVE--EGADIIDIGGEST 48 (258)
T ss_pred EE-ecCCCCchhhccccCCHHHHHHHHHHHHH--CCCCEEEECCCcC
Confidence 45 77899999984332 33555556666553 6789999999987
Done!