Query 003969
Match_columns 783
No_of_seqs 591 out of 3690
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 09:55:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003969.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003969hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jjq_A Uncharacterized RNA met 100.0 1E-44 3.6E-49 407.2 29.8 299 301-782 86-385 (425)
2 1uwv_A 23S rRNA (uracil-5-)-me 100.0 2.9E-40 9.9E-45 371.9 32.6 301 301-782 86-387 (433)
3 3bt7_A TRNA (uracil-5-)-methyl 100.0 3.2E-39 1.1E-43 356.1 33.8 271 301-665 3-277 (369)
4 2b78_A Hypothetical protein SM 99.9 3.8E-23 1.3E-27 229.3 20.5 238 367-666 16-280 (385)
5 1wxx_A TT1595, hypothetical pr 99.9 1.6E-22 5.6E-27 223.7 22.0 235 367-666 15-274 (382)
6 3c0k_A UPF0064 protein YCCW; P 99.9 6.5E-22 2.2E-26 219.7 26.1 233 374-666 35-288 (396)
7 2as0_A Hypothetical protein PH 99.9 5.3E-22 1.8E-26 220.4 23.2 241 369-666 18-284 (396)
8 4fxv_A ELAV-like protein 1; RN 99.6 4.3E-16 1.5E-20 140.2 9.6 78 162-239 16-98 (99)
9 3a27_A TYW2, uncharacterized p 99.6 8.2E-16 2.8E-20 162.4 12.5 103 554-661 75-181 (272)
10 3u1l_A PRE-mRNA-splicing facto 99.6 1.7E-15 6E-20 157.4 10.5 139 84-243 71-232 (240)
11 2jvr_A Nucleolar protein 3; RN 99.6 4.7E-15 1.6E-19 136.7 9.0 79 162-240 25-105 (111)
12 3p5t_L Cleavage and polyadenyl 99.6 3.1E-15 1.1E-19 131.5 6.6 76 166-241 2-84 (90)
13 4f25_A Polyadenylate-binding p 99.6 8.6E-15 2.9E-19 134.8 9.6 77 166-242 6-85 (115)
14 3s8s_A Histone-lysine N-methyl 99.5 2E-14 6.7E-19 132.0 10.1 79 162-240 3-86 (110)
15 3md1_A Nuclear and cytoplasmic 99.5 2.6E-14 9E-19 122.8 9.7 76 166-241 2-82 (83)
16 2lxi_A RNA-binding protein 10; 99.5 1.2E-14 4.3E-19 128.4 7.6 75 167-241 3-84 (91)
17 3bs9_A Nucleolysin TIA-1 isofo 99.5 2.6E-14 8.9E-19 123.9 9.2 79 163-241 4-87 (87)
18 2wbr_A GW182, gawky, LD47780P; 99.5 2.3E-14 7.8E-19 126.4 8.8 72 164-237 6-78 (89)
19 2e5j_A Methenyltetrahydrofolat 99.5 4.5E-14 1.5E-18 125.6 10.9 80 162-241 16-95 (97)
20 3p9n_A Possible methyltransfer 99.5 4.6E-13 1.6E-17 132.4 17.7 98 566-664 10-108 (189)
21 1whw_A Hypothetical protein ri 99.5 1E-13 3.6E-18 123.3 11.4 81 162-242 5-90 (99)
22 2lkz_A RNA-binding protein 5; 99.5 3.5E-14 1.2E-18 127.1 8.3 73 167-239 11-94 (95)
23 2dgx_A KIAA0430 protein; RRM d 99.5 8.1E-14 2.8E-18 124.0 10.5 79 163-241 7-91 (96)
24 3ns6_A Eukaryotic translation 99.5 2E-14 7E-19 129.0 6.5 77 164-240 5-93 (100)
25 2err_A Ataxin-2-binding protei 99.5 7.5E-14 2.5E-18 127.3 10.1 80 162-241 26-108 (109)
26 1sjq_A Polypyrimidine tract-bi 99.5 4.7E-14 1.6E-18 128.7 8.7 79 162-242 13-94 (105)
27 2dgw_A Probable RNA-binding pr 99.5 8.9E-14 3E-18 122.0 10.0 79 162-241 7-88 (91)
28 2dgo_A Cytotoxic granule-assoc 99.5 1.6E-13 5.4E-18 125.6 11.9 81 162-242 12-97 (115)
29 1x5s_A Cold-inducible RNA-bind 99.5 1.4E-13 4.6E-18 123.2 11.2 81 162-242 9-94 (102)
30 2fy1_A RNA-binding motif prote 99.5 1.5E-13 5E-18 127.0 11.7 81 163-243 5-89 (116)
31 2cqi_A Nucleolysin TIAR; RNA r 99.5 2.1E-13 7E-18 122.4 12.4 81 162-242 12-95 (103)
32 2jrs_A RNA-binding protein 39; 99.5 8.4E-14 2.9E-18 127.0 9.7 80 162-241 23-107 (108)
33 2x1f_A MRNA 3'-END-processing 99.5 1.1E-13 3.8E-18 122.7 10.2 78 165-242 2-84 (96)
34 2cq3_A RNA-binding protein 9; 99.5 2.5E-13 8.4E-18 121.9 12.6 81 162-242 12-95 (103)
35 1x5t_A Splicing factor 3B subu 99.5 1.1E-13 3.7E-18 122.3 10.1 79 163-241 3-87 (96)
36 2dnz_A Probable RNA-binding pr 99.5 1.6E-13 5.6E-18 121.0 11.1 79 163-241 3-86 (95)
37 2dgv_A HnRNP M, heterogeneous 99.5 1.1E-13 3.6E-18 121.4 9.8 80 162-241 5-87 (92)
38 2igt_A SAM dependent methyltra 99.5 5E-13 1.7E-17 145.3 17.3 103 562-665 112-219 (332)
39 2dng_A Eukaryotic translation 99.5 1.1E-13 3.9E-18 124.2 10.1 80 162-242 12-95 (103)
40 1fj7_A Nucleolin RBD1, protein 99.5 6.7E-14 2.3E-18 125.2 8.2 78 162-241 14-96 (101)
41 2d9p_A Polyadenylate-binding p 99.5 2.2E-13 7.5E-18 122.2 11.3 81 162-242 12-95 (103)
42 2yx1_A Hypothetical protein MJ 99.5 1.9E-13 6.6E-18 148.6 12.7 102 555-661 151-255 (336)
43 2cpz_A CUG triplet repeat RNA- 99.5 2.2E-13 7.4E-18 124.8 11.0 81 162-242 22-107 (115)
44 1p27_B RNA-binding protein 8A; 99.5 1.6E-13 5.5E-18 123.6 9.9 80 162-241 20-104 (106)
45 2dnn_A RNA-binding protein 12; 99.5 6.5E-14 2.2E-18 128.6 7.4 77 165-242 16-95 (109)
46 2cpe_A RNA-binding protein EWS 99.5 2.1E-13 7.1E-18 124.4 10.6 80 162-241 12-104 (113)
47 2cqb_A Peptidyl-prolyl CIS-tra 99.5 1.9E-13 6.5E-18 122.2 10.1 80 162-241 9-93 (102)
48 4a8x_A RNA-binding protein wit 99.5 1.6E-13 5.6E-18 118.9 9.4 76 165-240 4-85 (88)
49 1x4h_A RNA-binding protein 28; 99.5 3.4E-13 1.2E-17 122.3 11.9 81 162-242 12-103 (111)
50 3r27_A HnRNP L, heterogeneous 99.5 2.3E-13 7.8E-18 123.2 10.6 78 162-241 18-98 (100)
51 1wi8_A EIF-4B, eukaryotic tran 99.5 1.6E-13 5.3E-18 123.5 9.5 80 162-242 12-96 (104)
52 3mdf_A Peptidyl-prolyl CIS-tra 99.5 1.8E-13 6E-18 118.1 9.5 76 163-238 5-85 (85)
53 2do4_A Squamous cell carcinoma 99.5 2.4E-13 8.1E-18 121.3 10.6 80 162-241 14-97 (100)
54 2la6_A RNA-binding protein FUS 99.5 1.8E-13 6.3E-18 122.0 9.8 77 162-238 10-99 (99)
55 2cq0_A Eukaryotic translation 99.5 2E-13 6.8E-18 122.5 10.1 80 162-241 12-96 (103)
56 1x4a_A Splicing factor, argini 99.5 2.2E-13 7.6E-18 123.6 10.5 79 163-241 20-100 (109)
57 1x5u_A Splicing factor 3B subu 99.5 2.6E-13 9E-18 122.0 10.9 80 162-241 12-96 (105)
58 2cpf_A RNA binding motif prote 99.5 1.7E-13 5.8E-18 121.7 9.5 79 163-241 3-89 (98)
59 1oo0_B CG8781-PA, drosophila Y 99.5 2E-13 6.8E-18 124.0 10.1 80 162-241 23-107 (110)
60 2dnh_A Bruno-like 5, RNA bindi 99.5 3.2E-13 1.1E-17 121.4 11.2 81 162-242 12-99 (105)
61 2dgs_A DAZ-associated protein 99.5 4.5E-13 1.5E-17 119.3 12.1 80 162-242 7-91 (99)
62 2cph_A RNA binding motif prote 99.5 4.8E-13 1.6E-17 120.5 12.4 81 162-242 12-99 (107)
63 1fjc_A Nucleolin RBD2, protein 99.4 1.5E-13 5E-18 121.6 8.8 79 162-241 13-92 (96)
64 2ad9_A Polypyrimidine tract-bi 99.4 3.2E-13 1.1E-17 126.0 11.4 79 162-242 28-109 (119)
65 1wg1_A KIAA1579 protein, homol 99.4 1.9E-13 6.5E-18 119.5 9.2 76 164-241 4-79 (88)
66 3n9u_C Cleavage and polyadenyl 99.4 8.9E-14 3.1E-18 135.4 7.8 78 163-240 53-137 (156)
67 1x4d_A Matrin 3; structural ge 99.4 2.1E-13 7.1E-18 123.8 9.7 78 162-241 12-93 (102)
68 2fc9_A NCL protein; structure 99.4 2.1E-13 7.2E-18 121.9 9.6 80 162-241 12-92 (101)
69 2dhg_A TRNA selenocysteine ass 99.4 2.7E-13 9.2E-18 121.7 9.7 81 162-242 6-92 (104)
70 2cqc_A Arginine/serine-rich sp 99.4 4.3E-13 1.5E-17 118.1 10.7 77 162-238 12-93 (95)
71 2a3j_A U1 small nuclear ribonu 99.4 2.7E-13 9.1E-18 127.8 9.9 82 162-243 26-113 (127)
72 3ex7_B RNA-binding protein 8A; 99.4 2.8E-13 9.5E-18 126.0 9.9 82 162-243 19-105 (126)
73 2j76_E EIF-4B, EIF4B, eukaryot 99.4 1E-13 3.4E-18 124.3 6.6 79 162-241 16-99 (100)
74 2mss_A Protein (musashi1); RNA 99.4 1.7E-13 5.8E-18 115.7 7.6 70 167-237 1-75 (75)
75 2la4_A Nuclear and cytoplasmic 99.4 2.2E-13 7.7E-18 121.7 8.7 75 164-240 26-101 (101)
76 2e5h_A Zinc finger CCHC-type a 99.4 4.8E-13 1.6E-17 117.7 10.6 77 162-238 13-94 (94)
77 2cpi_A CCR4-NOT transcription 99.4 1.8E-13 6E-18 125.1 8.0 79 163-241 13-102 (111)
78 2dgp_A Bruno-like 4, RNA bindi 99.4 5.5E-13 1.9E-17 120.1 11.2 80 162-241 10-97 (106)
79 2dnm_A SRP46 splicing factor; 99.4 3.6E-13 1.2E-17 120.8 9.9 79 162-240 10-93 (103)
80 2hvz_A Splicing factor, argini 99.4 3.9E-13 1.3E-17 120.2 10.0 74 167-241 2-76 (101)
81 2fc8_A NCL protein; structure 99.4 3.5E-13 1.2E-17 120.6 9.6 78 162-241 12-93 (102)
82 1nu4_A U1A RNA binding domain; 99.4 2.5E-13 8.4E-18 120.3 8.5 80 163-242 6-91 (97)
83 2cpx_A Hypothetical protein FL 99.4 4.9E-13 1.7E-17 122.2 10.7 80 162-241 22-106 (115)
84 1p1t_A Cleavage stimulation fa 99.4 2.6E-13 8.9E-18 121.7 8.6 78 165-242 8-90 (104)
85 1why_A Hypothetical protein ri 99.4 6.3E-13 2.1E-17 118.0 11.0 78 162-241 14-94 (97)
86 2cqp_A RNA-binding protein 12; 99.4 2.6E-13 9E-18 120.4 8.5 79 162-240 12-95 (98)
87 1wez_A HnRNP H', FTP-3, hetero 99.4 2.2E-13 7.4E-18 123.2 8.0 78 162-240 12-92 (102)
88 2nlw_A Eukaryotic translation 99.4 3.2E-13 1.1E-17 122.2 9.1 78 163-240 13-100 (105)
89 1x4c_A Splicing factor, argini 99.4 4.1E-13 1.4E-17 122.0 9.8 77 162-241 12-94 (108)
90 3axs_A Probable N(2),N(2)-dime 99.4 7.5E-13 2.6E-17 147.0 13.9 97 567-663 7-119 (392)
91 2dnq_A RNA-binding protein 4B; 99.4 7E-13 2.4E-17 116.1 10.9 76 162-241 5-81 (90)
92 2frn_A Hypothetical protein PH 99.4 4E-13 1.4E-17 142.1 11.2 102 554-661 81-187 (278)
93 2kxn_B Transformer-2 protein h 99.4 4.4E-13 1.5E-17 126.3 10.2 79 162-240 43-126 (129)
94 1wg5_A Heterogeneous nuclear r 99.4 5.5E-13 1.9E-17 120.4 10.2 80 162-242 12-96 (104)
95 2cpd_A Apobec-1 stimulating pr 99.4 1E-12 3.5E-17 117.1 11.8 76 162-241 12-90 (99)
96 2m2b_A RNA-binding protein 10; 99.4 1.8E-13 6.1E-18 128.7 7.2 78 162-240 20-108 (131)
97 2krb_A Eukaryotic translation 99.4 1.3E-13 4.3E-18 118.7 5.5 70 166-235 2-81 (81)
98 2cq1_A PTB-like protein L; RRM 99.4 7E-13 2.4E-17 120.0 10.6 79 162-242 12-93 (101)
99 3ucg_A Polyadenylate-binding p 99.4 4E-13 1.4E-17 116.9 8.6 75 165-240 6-85 (89)
100 2cpy_A RNA-binding protein 12; 99.4 1.5E-13 5.1E-18 126.2 6.2 79 162-241 12-95 (114)
101 3lqv_A PRE-mRNA branch site pr 99.4 3.5E-13 1.2E-17 123.3 8.7 79 163-241 6-86 (115)
102 1u6f_A Tcubp1, RNA-binding pro 99.4 8.2E-13 2.8E-17 124.9 11.3 80 162-241 39-123 (139)
103 1s79_A Lupus LA protein; RRM, 99.4 4.2E-13 1.4E-17 121.7 8.9 76 163-239 9-88 (103)
104 1x4g_A Nucleolysin TIAR; struc 99.4 7.7E-13 2.6E-17 120.1 10.6 78 163-242 23-101 (109)
105 2dgu_A Heterogeneous nuclear r 99.4 1.3E-12 4.3E-17 117.5 11.9 79 162-244 8-87 (103)
106 2rs2_A Musashi-1, RNA-binding 99.4 4.5E-13 1.5E-17 122.2 8.9 81 162-243 22-107 (109)
107 2lmi_A GRSF-1, G-rich sequence 99.4 1.7E-13 5.9E-18 124.4 6.0 79 162-241 8-93 (107)
108 2do0_A HnRNP M, heterogeneous 99.4 1.5E-12 5.3E-17 118.7 12.3 79 162-240 12-94 (114)
109 2ek1_A RNA-binding protein 12; 99.4 3.5E-13 1.2E-17 118.8 7.7 76 163-238 13-93 (95)
110 2ywk_A Putative RNA-binding pr 99.4 6.2E-13 2.1E-17 117.2 9.2 77 162-238 13-93 (95)
111 2hgl_A HNRPF protein, heteroge 99.4 1.9E-13 6.4E-18 130.4 6.2 79 162-241 41-126 (136)
112 3egn_A RNA-binding protein 40; 99.4 4.9E-13 1.7E-17 127.2 9.1 79 162-240 42-130 (143)
113 2cpj_A Non-POU domain-containi 99.4 9.7E-13 3.3E-17 117.3 10.4 78 162-241 12-90 (99)
114 2kt5_A RNA and export factor-b 99.4 1.3E-12 4.5E-17 121.3 11.6 80 162-241 32-115 (124)
115 2cqh_A IGF-II mRNA-binding pro 99.4 8.9E-13 3.1E-17 116.0 9.9 76 163-241 6-84 (93)
116 2dgt_A RNA-binding protein 30; 99.4 1.3E-12 4.6E-17 114.8 11.0 76 162-241 7-83 (92)
117 2khc_A Testis-specific RNP-typ 99.4 4.9E-13 1.7E-17 122.9 8.5 77 162-238 37-118 (118)
118 3ulh_A THO complex subunit 4; 99.4 7.8E-13 2.7E-17 119.3 9.7 77 162-238 26-106 (107)
119 2db1_A Heterogeneous nuclear r 99.4 2.7E-13 9.1E-18 125.6 6.5 78 163-241 15-99 (118)
120 2dnp_A RNA-binding protein 14; 99.4 1.6E-12 5.6E-17 113.7 11.2 76 162-241 6-82 (90)
121 1x4f_A Matrin 3; structural ge 99.4 7.6E-13 2.6E-17 122.2 9.3 79 162-242 22-104 (112)
122 1wex_A Hypothetical protein (r 99.4 1.6E-12 5.4E-17 118.3 11.3 79 162-242 12-93 (104)
123 2cqd_A RNA-binding region cont 99.4 1.2E-12 4.1E-17 120.1 10.5 80 162-242 14-98 (116)
124 1nv8_A HEMK protein; class I a 99.4 2.2E-12 7.4E-17 137.2 14.0 96 564-661 88-185 (284)
125 2jvo_A Nucleolar protein 3; nu 99.4 1E-12 3.5E-17 119.8 9.9 76 162-241 28-104 (108)
126 2div_A TRNA selenocysteine ass 99.4 8E-13 2.8E-17 117.5 8.8 79 162-240 6-94 (99)
127 2fpo_A Methylase YHHF; structu 99.4 1.1E-12 3.9E-17 131.8 10.9 93 567-662 22-116 (202)
128 2hgm_A HNRPF protein, heteroge 99.4 2.4E-13 8.2E-18 128.0 5.5 78 162-240 39-121 (126)
129 2kvi_A Nuclear polyadenylated 99.4 8.3E-13 2.8E-17 117.3 8.6 77 162-242 7-85 (96)
130 2kn4_A Immunoglobulin G-bindin 99.4 1.4E-12 4.9E-17 125.7 11.0 78 163-240 68-150 (158)
131 2ki2_A SS-DNA binding protein 99.4 2.1E-13 7.3E-18 119.1 4.6 74 167-241 3-81 (90)
132 2hzc_A Splicing factor U2AF 65 99.4 1E-12 3.5E-17 113.8 8.8 73 163-236 4-86 (87)
133 2xnq_A Nuclear polyadenylated 99.4 1.8E-12 6.1E-17 115.8 10.5 75 162-240 19-95 (97)
134 2dis_A Unnamed protein product 99.4 1.4E-12 4.8E-17 118.0 10.0 79 164-242 7-94 (109)
135 1sjr_A Polypyrimidine tract-bi 99.4 1.3E-12 4.5E-17 128.1 10.5 82 162-243 43-127 (164)
136 2e44_A Insulin-like growth fac 99.4 1.4E-12 4.9E-17 115.2 9.8 78 164-241 14-93 (96)
137 2dul_A N(2),N(2)-dimethylguano 99.4 5.3E-12 1.8E-16 139.7 16.6 96 566-664 8-127 (378)
138 2ytc_A PRE-mRNA-splicing facto 99.4 1.5E-12 5.3E-17 112.3 9.7 75 162-238 9-85 (85)
139 3s7r_A Heterogeneous nuclear r 99.4 1.1E-12 3.6E-17 114.0 8.6 75 162-237 8-87 (87)
140 2hgn_A Heterogeneous nuclear r 99.4 2.5E-13 8.5E-18 130.0 4.7 79 162-241 43-124 (139)
141 1wel_A RNA-binding protein 12; 99.4 2.6E-13 9E-18 126.3 4.5 79 163-242 23-106 (124)
142 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 1.5E-12 5.2E-17 122.6 9.7 76 162-237 60-140 (140)
143 2dh8_A DAZ-associated protein 99.4 8.9E-13 3E-17 118.6 7.7 80 162-242 13-97 (105)
144 2i2y_A Fusion protein consists 99.4 2.1E-12 7.1E-17 123.9 10.7 79 162-241 70-149 (150)
145 1whx_A Hypothetical protein ri 99.4 1.5E-12 5E-17 119.3 9.2 77 164-242 9-86 (111)
146 2cq2_A Hypothetical protein LO 99.4 1.5E-12 5E-17 120.6 9.2 80 163-244 23-110 (114)
147 2cq4_A RNA binding motif prote 99.4 4.1E-13 1.4E-17 122.8 5.3 75 165-240 25-104 (114)
148 1x4e_A RNA binding motif, sing 99.4 4.9E-13 1.7E-17 115.6 5.5 74 163-236 3-81 (85)
149 2lea_A Serine/arginine-rich sp 99.4 1.4E-12 4.8E-17 123.7 9.0 79 163-241 45-128 (135)
150 1uaw_A Mouse-musashi-1; RNP-ty 99.3 8.1E-13 2.8E-17 111.8 6.5 70 167-237 2-76 (77)
151 1ws6_A Methyltransferase; stru 99.3 9.2E-12 3.2E-16 119.5 14.8 95 567-665 10-104 (171)
152 1wf1_A RNA-binding protein RAL 99.3 2.8E-12 9.6E-17 116.6 10.2 73 164-240 26-100 (110)
153 2e5i_A Heterogeneous nuclear r 99.3 4.8E-12 1.7E-16 118.8 12.0 79 163-243 23-105 (124)
154 1x5o_A RNA binding motif, sing 99.3 3.4E-12 1.2E-16 116.5 10.7 79 162-240 22-112 (114)
155 2yxd_A Probable cobalt-precorr 99.3 5.9E-12 2E-16 121.8 12.9 92 569-660 1-94 (183)
156 1h2v_Z 20 kDa nuclear CAP bind 99.3 3E-12 1E-16 123.6 10.4 79 163-241 37-120 (156)
157 2dha_A FLJ20171 protein; RRM d 99.3 4.7E-13 1.6E-17 125.4 4.6 78 164-242 22-107 (123)
158 3q2s_C Cleavage and polyadenyl 99.3 7.6E-13 2.6E-17 136.7 6.4 76 165-240 68-150 (229)
159 2jwn_A Embryonic polyadenylate 99.3 2.2E-12 7.4E-17 119.6 8.8 75 165-240 36-115 (124)
160 3d2w_A TAR DNA-binding protein 99.3 2.4E-12 8.2E-17 113.3 8.7 76 162-242 8-86 (89)
161 1rk8_A CG8781-PA, CG8781-PA pr 99.3 2.1E-12 7.1E-17 126.2 9.1 79 164-242 71-154 (165)
162 1x4b_A Heterogeneous nuclear r 99.3 2E-12 6.8E-17 118.5 8.4 77 165-242 27-108 (116)
163 3beg_B Splicing factor, argini 99.3 2.3E-12 7.8E-17 118.7 8.6 74 164-240 15-94 (115)
164 2ift_A Putative methylase HI07 99.3 2.1E-12 7.3E-17 129.7 9.1 93 567-662 21-117 (201)
165 2cqg_A TDP-43, TAR DNA-binding 99.3 6.8E-12 2.3E-16 112.4 11.1 79 162-242 12-95 (103)
166 2e5g_A U6 snRNA-specific termi 99.3 4.3E-12 1.5E-16 112.1 9.5 76 164-242 7-84 (94)
167 1iqt_A AUF1, heterogeneous nuc 99.3 1.3E-12 4.6E-17 110.0 5.8 70 167-237 1-75 (75)
168 3zzy_A Polypyrimidine tract-bi 99.3 4.8E-12 1.7E-16 119.7 10.1 81 162-243 25-109 (130)
169 1x5p_A Negative elongation fac 99.3 8.9E-12 3.1E-16 110.7 10.7 76 162-241 12-88 (97)
170 2lcw_A RNA-binding protein FUS 99.0 2.2E-13 7.6E-18 125.1 0.0 79 163-241 5-96 (116)
171 4f02_A Polyadenylate-binding p 99.3 3.6E-12 1.2E-16 129.1 8.6 77 165-241 103-182 (213)
172 2fhp_A Methylase, putative; al 99.3 9.2E-12 3.1E-16 121.5 10.9 96 567-665 12-110 (187)
173 3pgw_S U1-70K; protein-RNA com 99.3 2.2E-11 7.4E-16 137.2 14.1 80 163-242 100-184 (437)
174 2f3j_A RNA and export factor b 99.2 1.4E-11 4.7E-16 122.3 9.4 79 162-240 85-167 (177)
175 1wy7_A Hypothetical protein PH 99.2 5.8E-11 2E-15 118.4 13.8 80 579-660 28-108 (207)
176 2xs2_A Deleted in azoospermia- 99.2 4.6E-12 1.6E-16 113.3 5.2 76 164-241 8-87 (102)
177 4dmg_A Putative uncharacterize 99.2 3.2E-11 1.1E-15 134.1 13.0 96 562-664 176-276 (393)
178 1fxl_A Paraneoplastic encephal 99.2 2E-11 6.9E-16 116.7 9.9 77 165-241 2-83 (167)
179 2diu_A KIAA0430 protein; struc 99.2 2.7E-11 9.3E-16 107.9 9.9 72 168-243 12-87 (96)
180 2b3t_A Protein methyltransfera 99.2 4E-11 1.4E-15 125.9 13.0 93 565-660 76-170 (276)
181 1b7f_A Protein (SXL-lethal pro 99.2 1.8E-11 6.1E-16 117.6 9.5 77 164-240 2-83 (168)
182 1fje_B Nucleolin RBD12, protei 99.2 1.4E-11 4.7E-16 119.7 8.6 79 162-241 96-175 (175)
183 3ll7_A Putative methyltransfer 99.2 8.3E-12 2.8E-16 139.2 7.7 89 572-665 68-159 (410)
184 2h00_A Methyltransferase 10 do 99.2 1.2E-11 4.1E-16 127.8 8.4 97 564-660 24-127 (254)
185 2cjk_A Nuclear polyadenylated 99.2 1.1E-11 3.8E-16 119.1 7.5 76 165-241 87-167 (167)
186 2bz2_A Negative elongation fac 99.2 2.9E-11 9.8E-16 112.7 9.9 76 163-242 37-113 (121)
187 4f02_A Polyadenylate-binding p 99.2 2.3E-11 7.7E-16 123.3 10.0 77 164-240 14-95 (213)
188 3md3_A Nuclear and cytoplasmic 99.2 3.7E-11 1.3E-15 114.7 10.6 78 162-239 84-166 (166)
189 2dnl_A Cytoplasmic polyadenyla 99.2 3E-11 1E-15 110.7 9.1 76 162-239 5-87 (114)
190 2esr_A Methyltransferase; stru 99.2 3.2E-11 1.1E-15 117.3 9.6 76 588-663 17-95 (177)
191 4dzr_A Protein-(glutamine-N5) 99.2 1.7E-11 6E-16 121.6 7.8 91 571-664 1-94 (215)
192 2qfj_A FBP-interacting repress 99.2 3.7E-11 1.3E-15 120.3 10.3 79 164-242 124-207 (216)
193 3k6r_A Putative transferase PH 99.2 3.2E-11 1.1E-15 128.1 10.2 100 555-660 82-186 (278)
194 3md3_A Nuclear and cytoplasmic 99.2 2.7E-11 9.1E-16 115.7 8.6 74 167-240 2-79 (166)
195 3njr_A Precorrin-6Y methylase; 99.2 8.2E-11 2.8E-15 118.5 11.6 73 589-661 43-116 (204)
196 2g4b_A Splicing factor U2AF 65 99.2 3.5E-11 1.2E-15 116.2 8.4 74 164-237 93-171 (172)
197 1wf0_A TDP-43, TAR DNA-binding 99.2 2.5E-11 8.7E-16 105.7 6.6 74 164-242 4-80 (88)
198 1l3k_A Heterogeneous nuclear r 99.2 4.8E-11 1.6E-15 117.7 9.4 78 162-240 10-92 (196)
199 3v97_A Ribosomal RNA large sub 99.2 1.2E-10 4E-15 138.5 14.1 98 564-664 504-605 (703)
200 1fje_B Nucleolin RBD12, protei 99.2 5.9E-11 2E-15 115.2 9.4 79 162-241 10-92 (175)
201 3tyt_A Heterogeneous nuclear r 99.2 6.9E-11 2.4E-15 119.8 10.2 75 165-240 4-80 (205)
202 2yh0_A Splicing factor U2AF 65 99.2 5.1E-11 1.7E-15 117.6 8.9 80 162-241 111-195 (198)
203 1l3k_A Heterogeneous nuclear r 99.2 5.2E-11 1.8E-15 117.4 8.6 79 164-243 103-186 (196)
204 2nxc_A L11 mtase, ribosomal pr 99.2 8.3E-11 2.8E-15 122.6 10.4 93 567-661 87-179 (254)
205 3pgw_A U1-A; protein-RNA compl 99.2 8.5E-11 2.9E-15 123.3 10.6 80 162-241 6-91 (282)
206 2g4b_A Splicing factor U2AF 65 99.1 6.3E-11 2.2E-15 114.3 8.8 74 165-239 4-87 (172)
207 2qfj_A FBP-interacting repress 99.1 8.7E-11 3E-15 117.6 9.9 76 165-240 28-108 (216)
208 2j8a_A Histone-lysine N-methyl 99.1 3E-11 1E-15 113.6 5.7 71 166-236 3-92 (136)
209 3gdh_A Trimethylguanosine synt 99.1 8.8E-11 3E-15 120.1 9.5 89 571-662 50-140 (241)
210 2yh0_A Splicing factor U2AF 65 99.1 5.6E-11 1.9E-15 117.4 7.7 75 165-240 4-88 (198)
211 2dit_A HIV TAT specific factor 99.1 1.5E-10 5.1E-15 105.9 9.6 79 164-242 14-104 (112)
212 1dus_A MJ0882; hypothetical pr 99.1 3.7E-10 1.3E-14 110.0 12.7 97 560-660 12-113 (194)
213 2adc_A Polypyrimidine tract-bi 99.1 1.7E-10 5.8E-15 118.1 10.7 79 163-242 32-112 (229)
214 2r6z_A UPF0341 protein in RSP 99.1 9.9E-11 3.4E-15 123.0 9.0 69 598-666 80-156 (258)
215 3nmr_A Cugbp ELAV-like family 99.1 1.5E-10 5E-15 111.7 9.5 74 164-237 94-174 (175)
216 1ne2_A Hypothetical protein TA 99.1 2.8E-10 9.6E-15 113.1 11.3 78 577-660 28-106 (200)
217 2pe8_A Splicing factor 45; RRM 99.1 1.9E-10 6.5E-15 104.6 9.0 79 164-242 7-96 (105)
218 3lpm_A Putative methyltransfer 99.1 4.7E-10 1.6E-14 116.7 13.2 90 567-662 20-112 (259)
219 3ajd_A Putative methyltransfer 99.1 3.7E-10 1.3E-14 118.9 12.5 69 596-664 78-149 (274)
220 1b7f_A Protein (SXL-lethal pro 99.1 2.5E-10 8.7E-15 109.5 10.2 76 162-237 86-168 (168)
221 2voo_A Lupus LA protein; RNA-b 99.1 1.3E-10 4.6E-15 116.7 8.4 74 166-240 110-187 (193)
222 3dmg_A Probable ribosomal RNA 99.1 2.5E-10 8.4E-15 126.4 11.0 92 568-660 197-291 (381)
223 3m4x_A NOL1/NOP2/SUN family pr 99.1 3.5E-10 1.2E-14 127.8 12.5 69 595-663 99-170 (456)
224 3nmr_A Cugbp ELAV-like family 99.1 1.7E-10 5.7E-15 111.3 8.4 74 165-238 3-86 (175)
225 1qm9_A Polypyrimidine tract-bi 99.1 1.9E-10 6.4E-15 114.2 9.0 75 166-241 4-80 (198)
226 3e05_A Precorrin-6Y C5,15-meth 99.1 4.1E-10 1.4E-14 112.2 10.7 70 591-660 30-101 (204)
227 2ghp_A U4/U6 snRNA-associated 99.1 1.7E-10 5.8E-15 121.6 8.2 78 163-241 208-292 (292)
228 2b9e_A NOL1/NOP2/SUN domain fa 99.1 5.1E-10 1.7E-14 120.5 12.0 66 595-660 96-164 (309)
229 4dcm_A Ribosomal RNA large sub 99.1 5.3E-10 1.8E-14 123.5 12.3 90 568-660 192-286 (375)
230 3evz_A Methyltransferase; NYSG 99.1 2.6E-10 8.9E-15 115.6 8.7 87 566-659 26-114 (230)
231 2adc_A Polypyrimidine tract-bi 99.1 4.4E-10 1.5E-14 115.0 10.4 78 163-240 149-228 (229)
232 2d9m_A Zinc finger CCCH-type d 99.0 3.5E-11 1.2E-15 100.2 1.7 37 75-112 12-48 (69)
233 3sde_A Paraspeckle component 1 99.0 4.7E-10 1.6E-14 117.2 10.7 76 162-239 19-95 (261)
234 1fxl_A Paraneoplastic encephal 99.0 4.3E-10 1.5E-14 107.4 9.5 74 164-237 87-167 (167)
235 3tm4_A TRNA (guanine N2-)-meth 99.0 2.4E-10 8.2E-15 125.9 8.7 72 589-661 206-280 (373)
236 1fbn_A MJ fibrillarin homologu 99.0 2.1E-10 7.2E-15 117.1 7.4 65 594-660 67-133 (230)
237 3tma_A Methyltransferase; thum 99.0 7.4E-10 2.5E-14 120.7 12.1 73 589-661 191-266 (354)
238 3smz_A Protein raver-1, ribonu 99.0 4E-10 1.4E-14 118.3 9.4 80 163-242 182-266 (284)
239 3m6w_A RRNA methylase; rRNA me 99.0 6.7E-10 2.3E-14 125.8 11.9 68 595-663 95-165 (464)
240 2cjk_A Nuclear polyadenylated 99.0 2.3E-10 7.9E-15 109.8 6.8 75 164-240 2-81 (167)
241 3smz_A Protein raver-1, ribonu 99.0 5.1E-10 1.7E-14 117.5 9.9 73 164-238 21-93 (284)
242 1qm9_A Polypyrimidine tract-bi 99.0 4.3E-10 1.5E-14 111.6 8.6 77 163-240 118-197 (198)
243 3pgw_A U1-A; protein-RNA compl 99.0 7.9E-10 2.7E-14 115.9 10.8 75 163-238 205-281 (282)
244 2h1r_A Dimethyladenosine trans 99.0 3.3E-10 1.1E-14 121.2 7.9 77 580-660 25-101 (299)
245 3tr6_A O-methyltransferase; ce 99.0 3.7E-09 1.3E-13 106.7 14.6 88 575-666 42-133 (225)
246 1yzh_A TRNA (guanine-N(7)-)-me 99.0 1.4E-09 4.8E-14 109.5 11.2 60 601-660 41-102 (214)
247 1jmt_A Splicing factor U2AF 35 99.0 1.9E-10 6.4E-15 104.4 4.2 68 170-237 20-103 (104)
248 1dl5_A Protein-L-isoaspartate 99.0 7.8E-10 2.7E-14 118.8 9.0 87 572-660 48-137 (317)
249 2ipx_A RRNA 2'-O-methyltransfe 99.0 7.6E-10 2.6E-14 112.9 8.5 77 582-660 56-137 (233)
250 1l3i_A Precorrin-6Y methyltran 99.0 2.4E-09 8.2E-14 104.0 11.3 76 587-662 19-95 (192)
251 1ixk_A Methyltransferase; open 99.0 1.5E-09 5.2E-14 116.8 10.6 67 595-661 112-181 (315)
252 3mti_A RRNA methylase; SAM-dep 99.0 1.3E-09 4.5E-14 106.6 9.2 62 599-660 20-81 (185)
253 3tyt_A Heterogeneous nuclear r 99.0 8.7E-10 3E-14 111.7 8.0 67 164-230 122-193 (205)
254 3dxy_A TRNA (guanine-N(7)-)-me 99.0 2.9E-09 1E-13 108.6 11.9 64 601-664 34-99 (218)
255 3duw_A OMT, O-methyltransferas 98.9 9.4E-09 3.2E-13 103.7 14.9 84 579-666 40-127 (223)
256 1yb2_A Hypothetical protein TA 98.9 8.4E-10 2.9E-14 115.9 7.0 86 575-660 80-173 (275)
257 2ozv_A Hypothetical protein AT 98.9 2E-09 6.9E-14 112.4 9.9 71 594-664 29-105 (260)
258 2frx_A Hypothetical protein YE 98.9 2.1E-09 7.2E-14 122.4 10.7 61 601-661 117-180 (479)
259 3ntv_A MW1564 protein; rossman 98.9 3.3E-09 1.1E-13 108.5 11.0 64 600-663 70-136 (232)
260 2ghp_A U4/U6 snRNA-associated 98.9 1.9E-09 6.5E-14 113.6 9.4 78 164-241 116-198 (292)
261 2avd_A Catechol-O-methyltransf 98.9 9.4E-09 3.2E-13 103.9 14.0 87 576-666 48-138 (229)
262 3dr5_A Putative O-methyltransf 98.9 5.1E-09 1.7E-13 107.1 11.9 82 582-664 38-124 (221)
263 1g8a_A Fibrillarin-like PRE-rR 98.9 2.6E-09 8.8E-14 108.3 9.5 83 567-660 44-133 (227)
264 2oyr_A UPF0341 protein YHIQ; a 98.9 7.4E-10 2.5E-14 116.4 5.6 71 593-663 78-159 (258)
265 3grz_A L11 mtase, ribosomal pr 98.9 2.3E-09 7.8E-14 106.8 8.6 91 568-660 28-120 (205)
266 1o9g_A RRNA methyltransferase; 98.9 1.4E-09 4.7E-14 112.3 7.1 68 579-646 29-100 (250)
267 3v4m_A Splicing factor U2AF 65 98.9 2.1E-09 7.3E-14 97.6 7.4 75 167-241 7-98 (105)
268 3eey_A Putative rRNA methylase 98.9 2.8E-09 9.6E-14 105.3 8.5 64 598-661 19-86 (197)
269 2yxl_A PH0851 protein, 450AA l 98.9 2.3E-09 8E-14 120.9 8.6 66 595-660 253-321 (450)
270 3hm2_A Precorrin-6Y C5,15-meth 98.9 6.9E-09 2.4E-13 100.2 10.7 71 589-660 13-86 (178)
271 3u81_A Catechol O-methyltransf 98.9 1.4E-08 4.6E-13 102.9 13.3 84 578-665 39-126 (221)
272 3tfw_A Putative O-methyltransf 98.9 1.1E-08 3.6E-13 106.1 12.6 82 579-664 45-130 (248)
273 2fca_A TRNA (guanine-N(7)-)-me 98.9 1E-08 3.5E-13 103.7 12.1 61 601-661 38-100 (213)
274 3ldu_A Putative methylase; str 98.9 2E-09 6.8E-14 119.3 7.1 77 584-660 178-295 (385)
275 3sde_A Paraspeckle component 1 98.9 4.2E-09 1.4E-13 109.9 9.2 78 164-241 95-180 (261)
276 3tht_A Alkylated DNA repair pr 98.9 4E-09 1.4E-13 115.0 9.1 75 162-238 15-97 (345)
277 3ldg_A Putative uncharacterize 98.8 6.5E-09 2.2E-13 115.2 10.6 75 586-660 179-294 (384)
278 3ue2_A Poly(U)-binding-splicin 98.8 6.1E-09 2.1E-13 96.8 8.1 75 166-240 21-109 (118)
279 1m6y_A S-adenosyl-methyltransf 98.8 8.5E-09 2.9E-13 110.7 10.3 74 588-662 13-88 (301)
280 1jg1_A PIMT;, protein-L-isoasp 98.8 1.9E-09 6.7E-14 110.1 4.3 72 587-658 77-149 (235)
281 2d9o_A DNAJ (HSP40) homolog, s 98.8 1E-08 3.5E-13 92.5 8.2 65 175-242 27-92 (100)
282 3mb5_A SAM-dependent methyltra 98.8 8.7E-09 3E-13 106.1 8.8 69 592-660 84-156 (255)
283 1sqg_A SUN protein, FMU protei 98.8 9.7E-09 3.3E-13 115.1 9.6 67 595-662 240-308 (429)
284 3bzb_A Uncharacterized protein 98.8 3.8E-08 1.3E-12 104.0 13.5 76 585-660 63-150 (281)
285 1sui_A Caffeoyl-COA O-methyltr 98.8 7.6E-08 2.6E-12 99.9 15.5 86 577-666 59-148 (247)
286 3k0b_A Predicted N6-adenine-sp 98.8 7.5E-09 2.6E-13 115.0 8.3 76 585-660 185-301 (393)
287 2vdv_E TRNA (guanine-N(7)-)-me 98.8 1.2E-08 4.2E-13 105.1 9.3 64 600-663 48-121 (246)
288 1zq9_A Probable dimethyladenos 98.8 1E-08 3.5E-13 108.9 8.7 76 581-660 12-88 (285)
289 3r3h_A O-methyltransferase, SA 98.8 1.3E-08 4.3E-13 105.4 9.0 87 576-666 39-129 (242)
290 3s6e_A RNA-binding protein 39; 98.7 1.2E-08 4E-13 94.3 7.1 65 179-243 31-96 (114)
291 3lbf_A Protein-L-isoaspartate 98.7 3.7E-08 1.3E-12 98.2 10.8 72 590-661 66-137 (210)
292 3tqs_A Ribosomal RNA small sub 98.7 1.1E-08 3.8E-13 107.2 7.0 70 590-661 18-87 (255)
293 2gpy_A O-methyltransferase; st 98.7 3.2E-08 1.1E-12 100.7 10.1 81 580-664 37-120 (233)
294 3c3p_A Methyltransferase; NP_9 98.7 3.7E-08 1.3E-12 98.6 10.2 63 601-663 56-122 (210)
295 3gru_A Dimethyladenosine trans 98.7 1.4E-08 4.7E-13 108.7 7.4 71 588-660 37-107 (295)
296 2hnk_A SAM-dependent O-methylt 98.7 6.5E-08 2.2E-12 99.0 12.0 83 580-666 43-129 (239)
297 2yvl_A TRMI protein, hypotheti 98.7 5E-08 1.7E-12 99.5 11.0 69 592-660 82-151 (248)
298 3c3y_A Pfomt, O-methyltransfer 98.7 1.6E-07 5.5E-12 96.6 14.5 85 578-666 51-139 (237)
299 1o54_A SAM-dependent O-methylt 98.7 3.9E-08 1.3E-12 103.1 9.8 70 592-661 103-176 (277)
300 2pwy_A TRNA (adenine-N(1)-)-me 98.7 5E-08 1.7E-12 100.1 10.4 71 591-661 86-160 (258)
301 4df3_A Fibrillarin-like rRNA/T 98.7 4.2E-08 1.4E-12 101.5 9.5 94 557-660 40-137 (233)
302 4gek_A TRNA (CMO5U34)-methyltr 98.7 3.8E-08 1.3E-12 103.2 9.2 62 599-660 68-134 (261)
303 3uwp_A Histone-lysine N-methyl 98.7 1.1E-07 3.9E-12 105.6 13.4 75 587-661 159-244 (438)
304 3ftd_A Dimethyladenosine trans 98.7 2.5E-08 8.4E-13 104.1 7.6 69 589-661 19-88 (249)
305 2pbf_A Protein-L-isoaspartate 98.7 9.7E-08 3.3E-12 96.5 11.7 64 598-661 77-152 (227)
306 1xdz_A Methyltransferase GIDB; 98.7 4.9E-08 1.7E-12 100.1 9.6 63 600-662 69-133 (240)
307 3kr9_A SAM-dependent methyltra 98.7 4.6E-08 1.6E-12 100.7 9.2 69 592-662 8-79 (225)
308 3g89_A Ribosomal RNA small sub 98.7 4.8E-08 1.6E-12 101.7 9.5 63 600-662 79-143 (249)
309 3gnl_A Uncharacterized protein 98.7 3.8E-08 1.3E-12 102.5 8.6 69 592-662 14-85 (244)
310 3cbg_A O-methyltransferase; cy 98.7 2.5E-07 8.4E-12 94.7 14.5 84 579-666 54-141 (232)
311 2qm3_A Predicted methyltransfe 98.7 4.8E-08 1.6E-12 107.4 9.7 60 600-660 171-232 (373)
312 1m9o_A Tristetraproline; Cys3H 98.6 1.1E-08 3.9E-13 87.5 3.4 40 75-114 4-43 (77)
313 1i9g_A Hypothetical protein RV 98.6 6.5E-08 2.2E-12 100.9 9.7 71 591-661 89-165 (280)
314 1vbf_A 231AA long hypothetical 98.6 6.7E-08 2.3E-12 97.8 9.4 70 589-660 58-127 (231)
315 3v97_A Ribosomal RNA large sub 98.6 5.1E-08 1.7E-12 115.9 9.8 76 585-660 174-294 (703)
316 3lec_A NADB-rossmann superfami 98.6 5.8E-08 2E-12 100.3 8.6 68 593-662 15-85 (230)
317 3r0q_C Probable protein argini 98.6 1E-07 3.5E-12 105.0 10.9 75 585-660 47-123 (376)
318 3fut_A Dimethyladenosine trans 98.6 6E-08 2.1E-12 102.5 8.3 73 581-661 31-103 (271)
319 3vc1_A Geranyl diphosphate 2-C 98.6 7.3E-08 2.5E-12 102.7 9.1 87 573-660 89-178 (312)
320 3ckk_A TRNA (guanine-N(7)-)-me 98.6 1.3E-07 4.6E-12 97.4 10.8 64 600-663 45-116 (235)
321 3fpf_A Mtnas, putative unchara 98.6 3.6E-07 1.2E-11 97.7 14.3 66 595-660 116-183 (298)
322 3m70_A Tellurite resistance pr 98.6 7.4E-08 2.5E-12 100.9 8.8 90 569-660 89-178 (286)
323 1xj5_A Spermidine synthase 1; 98.6 4.1E-07 1.4E-11 98.9 14.6 65 600-664 119-189 (334)
324 3hem_A Cyclopropane-fatty-acyl 98.6 1.6E-07 5.4E-12 99.4 11.2 78 584-661 55-134 (302)
325 1nkv_A Hypothetical protein YJ 98.6 1.3E-07 4.4E-12 96.9 10.1 73 589-661 24-98 (256)
326 1vl5_A Unknown conserved prote 98.6 7.4E-08 2.5E-12 99.4 8.2 70 591-660 27-96 (260)
327 3jwg_A HEN1, methyltransferase 98.6 7.9E-08 2.7E-12 96.4 8.1 76 584-659 12-94 (219)
328 2pjd_A Ribosomal RNA small sub 98.6 1E-07 3.4E-12 103.5 9.5 89 566-659 164-255 (343)
329 3q7e_A Protein arginine N-meth 98.6 1.2E-07 4.2E-12 103.3 10.1 72 589-661 54-127 (349)
330 2b25_A Hypothetical protein; s 98.6 1.2E-07 4E-12 102.4 9.7 71 592-662 96-180 (336)
331 2xvm_A Tellurite resistance pr 98.6 1.7E-07 5.9E-12 91.8 9.9 69 593-661 24-92 (199)
332 3uzu_A Ribosomal RNA small sub 98.6 5.4E-08 1.9E-12 103.3 6.6 73 581-661 26-102 (279)
333 1jsx_A Glucose-inhibited divis 98.6 8E-08 2.7E-12 95.4 7.5 61 601-661 65-127 (207)
334 1i1n_A Protein-L-isoaspartate 98.6 1.7E-07 5.7E-12 94.7 9.6 62 599-660 75-144 (226)
335 1mjf_A Spermidine synthase; sp 98.5 2.6E-07 8.9E-12 97.7 10.6 64 600-664 74-149 (281)
336 3fzg_A 16S rRNA methylase; met 98.5 1.9E-07 6.5E-12 93.8 8.9 72 585-660 35-109 (200)
337 1pjz_A Thiopurine S-methyltran 98.5 5.7E-08 1.9E-12 97.4 5.2 66 597-662 18-95 (203)
338 3ofk_A Nodulation protein S; N 98.5 1.2E-07 4.2E-12 94.7 7.5 79 581-661 31-109 (216)
339 1qam_A ERMC' methyltransferase 98.5 1.3E-07 4.3E-12 98.1 7.8 71 589-661 18-88 (244)
340 3jwh_A HEN1; methyltransferase 98.5 2.1E-07 7E-12 93.4 9.2 72 588-659 16-94 (217)
341 3f4k_A Putative methyltransfer 98.5 2.4E-07 8.1E-12 95.0 9.8 71 591-661 35-108 (257)
342 1xxl_A YCGJ protein; structura 98.5 2.4E-07 8.3E-12 94.6 9.8 68 593-660 13-80 (239)
343 2yxe_A Protein-L-isoaspartate 98.5 3.2E-07 1.1E-11 91.7 10.3 70 591-660 67-139 (215)
344 3q87_B N6 adenine specific DNA 98.5 1.3E-07 4.3E-12 92.2 6.6 67 582-660 6-72 (170)
345 3dh0_A SAM dependent methyltra 98.5 2.2E-07 7.7E-12 92.8 8.5 68 593-660 29-99 (219)
346 4azs_A Methyltransferase WBDD; 98.5 3.6E-07 1.2E-11 106.1 11.3 65 601-665 66-130 (569)
347 1qyr_A KSGA, high level kasuga 98.5 1.8E-07 6.3E-12 97.7 7.9 68 590-661 10-79 (252)
348 1g6q_1 HnRNP arginine N-methyl 98.5 3.2E-07 1.1E-11 99.1 10.1 73 587-660 24-98 (328)
349 1inl_A Spermidine synthase; be 98.5 2.5E-07 8.4E-12 98.7 9.0 63 601-663 90-158 (296)
350 2o07_A Spermidine synthase; st 98.5 4E-07 1.4E-11 97.6 10.4 65 600-664 94-164 (304)
351 1wzn_A SAM-dependent methyltra 98.5 5.8E-07 2E-11 91.9 10.9 71 590-661 30-100 (252)
352 3bus_A REBM, methyltransferase 98.5 5.3E-07 1.8E-11 93.3 10.8 78 583-660 43-122 (273)
353 1r18_A Protein-L-isoaspartate( 98.5 2.3E-07 7.8E-12 94.1 7.7 62 599-660 82-156 (227)
354 1ve3_A Hypothetical protein PH 98.5 3.5E-07 1.2E-11 91.6 9.0 74 584-660 23-96 (227)
355 2pt6_A Spermidine synthase; tr 98.5 5.2E-07 1.8E-11 97.5 10.9 64 601-664 116-185 (321)
356 4hc4_A Protein arginine N-meth 98.5 2.1E-07 7.1E-12 102.8 7.9 68 593-661 75-144 (376)
357 3kkz_A Uncharacterized protein 98.4 4.1E-07 1.4E-11 94.3 9.5 69 593-661 37-108 (267)
358 2fyt_A Protein arginine N-meth 98.4 4.9E-07 1.7E-11 98.3 10.0 74 587-661 50-125 (340)
359 2f8l_A Hypothetical protein LM 98.4 2.5E-07 8.6E-12 100.3 7.6 78 581-659 110-194 (344)
360 2gb4_A Thiopurine S-methyltran 98.4 2.8E-07 9.7E-12 96.1 7.6 63 599-661 66-145 (252)
361 3orh_A Guanidinoacetate N-meth 98.4 4E-07 1.4E-11 93.6 8.5 63 600-663 59-122 (236)
362 1iy9_A Spermidine synthase; ro 98.4 6.1E-07 2.1E-11 94.7 10.2 64 601-664 75-144 (275)
363 1kpg_A CFA synthase;, cyclopro 98.4 7.2E-07 2.4E-11 93.3 10.6 77 584-660 47-125 (287)
364 1zx0_A Guanidinoacetate N-meth 98.4 4.7E-07 1.6E-11 92.3 8.9 63 600-663 59-122 (236)
365 1uir_A Polyamine aminopropyltr 98.4 1.2E-06 4E-11 94.3 12.3 65 600-664 76-147 (314)
366 3dlc_A Putative S-adenosyl-L-m 98.4 5.3E-07 1.8E-11 89.3 8.9 73 587-660 30-104 (219)
367 2fk8_A Methoxy mycolic acid sy 98.4 7.8E-07 2.7E-11 94.7 10.6 77 585-661 74-152 (318)
368 3mgg_A Methyltransferase; NYSG 98.4 6.1E-07 2.1E-11 93.2 9.5 75 587-661 23-99 (276)
369 2dnr_A Synaptojanin-1; RRM dom 98.4 5.6E-07 1.9E-11 79.5 7.2 70 166-240 8-86 (91)
370 2o57_A Putative sarcosine dime 98.4 1E-06 3.6E-11 92.5 10.6 77 584-660 61-143 (297)
371 3iv6_A Putative Zn-dependent a 98.4 1.7E-07 5.7E-12 98.6 4.2 72 575-646 18-90 (261)
372 3adn_A Spermidine synthase; am 98.4 3.8E-07 1.3E-11 97.4 6.8 63 601-663 83-152 (294)
373 2ar0_A M.ecoki, type I restric 98.4 4.5E-07 1.5E-11 104.7 7.9 81 575-660 148-253 (541)
374 3mq2_A 16S rRNA methyltransfer 98.4 1.9E-07 6.4E-12 93.8 4.2 64 597-660 23-92 (218)
375 4htf_A S-adenosylmethionine-de 98.4 1.1E-06 3.6E-11 92.0 10.0 61 602-662 69-130 (285)
376 1u2z_A Histone-lysine N-methyl 98.4 1E-06 3.5E-11 99.0 10.4 80 576-659 221-311 (433)
377 2yqz_A Hypothetical protein TT 98.3 7.3E-07 2.5E-11 91.3 8.5 77 583-660 20-97 (263)
378 3b3j_A Histone-arginine methyl 98.3 9.6E-07 3.3E-11 100.5 10.3 76 584-660 141-218 (480)
379 3bwc_A Spermidine synthase; SA 98.3 1.6E-06 5.4E-11 92.8 11.3 64 600-663 94-163 (304)
380 2okc_A Type I restriction enzy 98.3 4.2E-07 1.5E-11 102.2 7.1 78 577-659 152-246 (445)
381 2i7c_A Spermidine synthase; tr 98.3 1.8E-06 6.3E-11 91.3 11.4 65 600-664 77-147 (283)
382 3g5t_A Trans-aconitate 3-methy 98.3 1.1E-06 3.8E-11 92.8 9.5 73 588-661 24-101 (299)
383 3dtn_A Putative methyltransfer 98.3 8.5E-07 2.9E-11 89.7 8.2 71 589-661 31-104 (234)
384 3hnr_A Probable methyltransfer 98.3 4E-07 1.4E-11 91.0 5.7 62 595-660 39-100 (220)
385 3ggd_A SAM-dependent methyltra 98.3 4.3E-06 1.5E-10 85.2 13.3 61 599-662 54-114 (245)
386 1owx_A Lupus LA protein, SS-B, 98.3 1.3E-06 4.3E-11 81.5 8.4 74 162-237 15-93 (121)
387 1y8c_A S-adenosylmethionine-de 98.3 1E-06 3.6E-11 89.0 8.6 60 601-661 37-96 (246)
388 2y1w_A Histone-arginine methyl 98.3 1.6E-06 5.5E-11 94.4 10.5 74 587-661 36-111 (348)
389 3ujc_A Phosphoethanolamine N-m 98.3 7.2E-07 2.5E-11 91.4 7.3 71 589-661 43-114 (266)
390 2b2c_A Spermidine synthase; be 98.3 9.7E-07 3.3E-11 95.1 8.5 64 601-664 108-177 (314)
391 3g5l_A Putative S-adenosylmeth 98.3 1.5E-06 5.2E-11 89.0 9.4 73 585-660 28-101 (253)
392 3g2m_A PCZA361.24; SAM-depende 98.3 9.4E-07 3.2E-11 93.3 7.9 68 592-660 74-144 (299)
393 3dli_A Methyltransferase; PSI- 98.3 2.7E-06 9.4E-11 86.6 10.7 68 589-664 28-96 (240)
394 1nt2_A Fibrillarin-like PRE-rR 98.3 1.9E-06 6.5E-11 87.1 9.3 62 597-660 53-116 (210)
395 3ou2_A SAM-dependent methyltra 98.3 1.2E-06 4.1E-11 87.0 7.7 59 599-661 44-102 (218)
396 3gjy_A Spermidine synthase; AP 98.3 2.5E-06 8.6E-11 92.0 10.4 62 603-664 91-154 (317)
397 3p2e_A 16S rRNA methylase; met 98.2 2.4E-07 8.3E-12 94.8 1.8 62 600-661 23-90 (225)
398 3sm3_A SAM-dependent methyltra 98.2 5.7E-07 1.9E-11 90.3 4.3 61 600-660 29-94 (235)
399 3d2l_A SAM-dependent methyltra 98.2 2.8E-06 9.7E-11 85.9 9.5 69 589-661 23-91 (243)
400 4hg2_A Methyltransferase type 98.2 5.7E-07 1.9E-11 94.2 4.2 66 588-661 28-93 (257)
401 3bkx_A SAM-dependent methyltra 98.2 1.5E-06 5.2E-11 90.0 7.4 69 589-657 31-109 (275)
402 3id6_C Fibrillarin-like rRNA/T 98.2 3.2E-06 1.1E-10 87.4 9.6 62 597-660 72-136 (232)
403 3gu3_A Methyltransferase; alph 98.2 2.4E-06 8.1E-11 89.7 8.9 62 598-660 19-83 (284)
404 3thr_A Glycine N-methyltransfe 98.2 2.6E-06 8.7E-11 89.2 9.1 74 589-662 45-122 (293)
405 3htx_A HEN1; HEN1, small RNA m 98.2 1.6E-06 5.6E-11 103.1 7.9 77 584-660 704-789 (950)
406 2kw5_A SLR1183 protein; struct 98.2 2E-06 6.7E-11 85.0 7.3 60 600-661 29-88 (202)
407 2ex4_A Adrenal gland protein A 98.2 1.5E-06 5.2E-11 88.5 6.7 78 584-661 61-140 (241)
408 3g07_A 7SK snRNA methylphospha 98.2 1.4E-06 4.9E-11 92.2 6.7 47 601-647 46-94 (292)
409 2p7i_A Hypothetical protein; p 98.2 1.6E-06 5.6E-11 87.4 6.8 58 600-661 41-98 (250)
410 3lcc_A Putative methyl chlorid 98.2 1.2E-06 4.1E-11 88.9 5.6 60 602-661 67-127 (235)
411 3m33_A Uncharacterized protein 98.2 3E-06 1E-10 85.8 8.5 56 600-660 47-102 (226)
412 1yub_A Ermam, rRNA methyltrans 98.2 7.8E-08 2.7E-12 99.3 -3.6 70 590-661 18-87 (245)
413 2qfm_A Spermine synthase; sper 98.2 5.4E-06 1.9E-10 90.8 10.6 65 601-665 188-261 (364)
414 3dxb_A Thioredoxin N-terminall 98.2 2.7E-06 9.2E-11 86.3 7.5 63 177-239 141-212 (222)
415 1xtp_A LMAJ004091AAA; SGPP, st 98.2 4.1E-06 1.4E-10 85.4 8.9 69 591-661 83-152 (254)
416 3cgg_A SAM-dependent methyltra 98.1 4.2E-06 1.4E-10 81.1 8.4 56 600-660 45-100 (195)
417 3ege_A Putative methyltransfer 98.1 1E-06 3.6E-11 91.2 4.1 66 589-660 22-87 (261)
418 3pfg_A N-methyltransferase; N, 98.1 3.2E-06 1.1E-10 87.2 7.7 69 585-660 36-104 (263)
419 2bm8_A Cephalosporin hydroxyla 98.1 1.5E-06 5.1E-11 89.5 5.1 56 601-661 81-142 (236)
420 2p35_A Trans-aconitate 2-methy 98.1 3.3E-06 1.1E-10 86.3 7.5 65 592-661 24-90 (259)
421 1ri5_A MRNA capping enzyme; me 98.1 5.5E-06 1.9E-10 86.4 9.2 63 599-661 62-126 (298)
422 1ufw_A Synaptojanin 2; RNP dom 98.1 4.2E-06 1.4E-10 74.3 6.4 69 164-237 14-92 (95)
423 3frh_A 16S rRNA methylase; met 98.1 8.7E-06 3E-10 84.5 9.8 69 587-660 94-162 (253)
424 3bkw_A MLL3908 protein, S-aden 98.1 4.1E-06 1.4E-10 84.7 7.1 66 593-661 35-101 (243)
425 2zig_A TTHA0409, putative modi 98.1 8.3E-06 2.8E-10 86.8 9.6 70 588-658 223-292 (297)
426 1ej0_A FTSJ; methyltransferase 98.1 9.4E-06 3.2E-10 76.9 9.0 52 599-661 20-74 (180)
427 3h2b_A SAM-dependent methyltra 98.1 4.1E-06 1.4E-10 82.7 6.6 55 602-661 42-96 (203)
428 2oo3_A Protein involved in cat 98.1 1.5E-06 5E-11 92.1 3.5 62 602-665 92-153 (283)
429 2ih2_A Modification methylase 98.1 2.2E-06 7.5E-11 94.7 5.1 67 581-660 23-92 (421)
430 3e8s_A Putative SAM dependent 98.1 7.5E-06 2.6E-10 81.4 8.5 63 593-661 44-106 (227)
431 2p8j_A S-adenosylmethionine-de 98.0 5.5E-06 1.9E-10 81.9 7.2 61 599-660 21-82 (209)
432 3l8d_A Methyltransferase; stru 98.0 6.5E-06 2.2E-10 83.3 7.9 68 589-661 43-110 (242)
433 2pxx_A Uncharacterized protein 98.0 5.3E-06 1.8E-10 81.9 7.1 69 589-661 32-101 (215)
434 3ccf_A Cyclopropane-fatty-acyl 98.0 4.2E-06 1.4E-10 87.3 6.6 63 593-660 49-111 (279)
435 3bgv_A MRNA CAP guanine-N7 met 98.0 7.5E-06 2.6E-10 87.0 8.6 75 587-661 18-102 (313)
436 3bxo_A N,N-dimethyltransferase 98.0 7.5E-06 2.6E-10 82.5 8.2 67 587-660 28-94 (239)
437 3i9f_A Putative type 11 methyl 98.0 2.7E-06 9.3E-11 81.6 4.6 58 595-657 11-68 (170)
438 3lcv_B Sisomicin-gentamicin re 98.0 5.3E-06 1.8E-10 87.0 7.1 71 586-659 119-191 (281)
439 3ocj_A Putative exported prote 98.0 4.4E-06 1.5E-10 88.6 6.6 64 598-661 115-182 (305)
440 4fzv_A Putative methyltransfer 98.0 1.3E-05 4.5E-10 87.9 10.4 67 595-661 142-216 (359)
441 3lkd_A Type I restriction-modi 98.0 6.4E-06 2.2E-10 95.1 8.3 84 576-660 197-287 (542)
442 3e23_A Uncharacterized protein 98.0 6.8E-06 2.3E-10 81.7 7.0 56 600-661 42-97 (211)
443 3dou_A Ribosomal RNA large sub 98.0 6.7E-06 2.3E-10 81.9 6.3 66 584-660 8-73 (191)
444 1m9o_A Tristetraproline; Cys3H 98.0 9.2E-07 3.1E-11 75.6 0.0 33 77-109 44-76 (77)
445 4fsd_A Arsenic methyltransfera 97.9 8.7E-06 3E-10 89.6 7.1 63 599-661 81-154 (383)
446 1g55_A DNA cytosine methyltran 97.9 1.7E-05 5.7E-10 86.4 8.2 55 603-662 3-60 (343)
447 2vdw_A Vaccinia virus capping 97.9 2.7E-05 9.1E-10 83.2 9.3 58 601-658 48-112 (302)
448 2nyu_A Putative ribosomal RNA 97.9 3.2E-05 1.1E-09 75.6 9.1 65 586-661 7-83 (196)
449 1x19_A CRTF-related protein; m 97.9 2.2E-05 7.4E-10 85.3 8.6 69 591-660 180-251 (359)
450 2gs9_A Hypothetical protein TT 97.9 1.4E-05 4.7E-10 79.4 6.4 53 601-660 36-88 (211)
451 1g60_A Adenine-specific methyl 97.9 1.9E-05 6.6E-10 82.4 7.8 59 589-648 201-259 (260)
452 1qzz_A RDMB, aclacinomycin-10- 97.9 3.7E-05 1.3E-09 83.5 10.1 67 593-660 174-243 (374)
453 2avn_A Ubiquinone/menaquinone 97.9 2.1E-05 7.4E-10 81.1 7.8 56 587-644 42-97 (260)
454 1wg8_A Predicted S-adenosylmet 97.8 3.5E-05 1.2E-09 81.6 9.0 74 588-665 9-82 (285)
455 2a14_A Indolethylamine N-methy 97.8 1E-05 3.5E-10 84.1 4.5 49 598-646 52-101 (263)
456 2r3s_A Uncharacterized protein 97.8 2.2E-05 7.6E-10 83.7 7.2 67 593-660 155-226 (335)
457 2qe6_A Uncharacterized protein 97.8 6.7E-05 2.3E-09 78.9 9.7 70 590-661 65-140 (274)
458 3opn_A Putative hemolysin; str 97.8 1.3E-05 4.6E-10 82.4 4.2 44 600-643 36-80 (232)
459 1tw3_A COMT, carminomycin 4-O- 97.7 5.5E-05 1.9E-09 81.8 9.0 66 594-660 176-244 (360)
460 2i62_A Nicotinamide N-methyltr 97.7 1.2E-05 4.2E-10 82.2 3.5 49 598-646 53-102 (265)
461 3gwz_A MMCR; methyltransferase 97.7 9.1E-05 3.1E-09 80.9 9.7 70 590-660 191-263 (369)
462 3s1s_A Restriction endonucleas 97.7 4E-05 1.4E-09 91.2 7.2 70 578-647 296-374 (878)
463 1p91_A Ribosomal RNA large sub 97.7 7.7E-05 2.6E-09 77.0 8.4 68 587-660 72-141 (269)
464 3khk_A Type I restriction-modi 97.7 1.9E-05 6.6E-10 91.1 4.1 75 579-658 227-319 (544)
465 3cc8_A Putative methyltransfer 97.6 2.7E-05 9.2E-10 77.5 4.3 61 592-660 24-84 (230)
466 2plw_A Ribosomal RNA methyltra 97.6 4.9E-05 1.7E-09 74.8 5.7 63 588-661 9-75 (201)
467 3i53_A O-methyltransferase; CO 97.6 8.3E-05 2.9E-09 79.6 7.3 63 597-660 165-230 (332)
468 1vlm_A SAM-dependent methyltra 97.6 6.4E-05 2.2E-09 75.4 5.9 68 579-660 28-95 (219)
469 2cmg_A Spermidine synthase; tr 97.6 6.3E-05 2.2E-09 78.8 6.1 62 601-662 72-137 (262)
470 3g7u_A Cytosine-specific methy 97.5 8.5E-05 2.9E-09 82.0 7.0 56 603-663 3-59 (376)
471 3mcz_A O-methyltransferase; ad 97.5 0.00015 5E-09 78.2 8.2 68 593-661 170-241 (352)
472 2ip2_A Probable phenazine-spec 97.5 7.6E-05 2.6E-09 79.9 5.7 68 591-660 158-228 (334)
473 3dp7_A SAM-dependent methyltra 97.5 0.00015 5.1E-09 79.0 8.1 59 601-660 179-240 (363)
474 3ufb_A Type I restriction-modi 97.5 0.00016 5.4E-09 83.3 8.3 78 576-658 197-289 (530)
475 3giw_A Protein of unknown func 97.4 0.00015 5E-09 76.8 6.7 74 588-661 64-143 (277)
476 2g72_A Phenylethanolamine N-me 97.4 0.00012 4.2E-09 76.6 6.1 44 601-644 71-115 (289)
477 4e2x_A TCAB9; kijanose, tetron 97.4 0.00017 5.7E-09 79.7 7.4 58 585-642 91-148 (416)
478 3hp7_A Hemolysin, putative; st 97.4 7.7E-05 2.6E-09 79.6 4.4 54 588-641 72-126 (291)
479 2aot_A HMT, histamine N-methyl 97.4 0.00023 7.9E-09 74.8 7.9 63 600-662 51-124 (292)
480 2wa2_A Non-structural protein 97.3 2.6E-05 8.8E-10 82.5 -0.8 66 593-660 74-143 (276)
481 2oxt_A Nucleoside-2'-O-methylt 97.2 3.8E-05 1.3E-09 80.7 -0.8 58 597-660 70-135 (265)
482 1af7_A Chemotaxis receptor met 97.2 0.00041 1.4E-08 73.3 7.0 66 574-643 82-157 (274)
483 2qy6_A UPF0209 protein YFCK; s 97.2 0.0011 3.7E-08 69.4 9.4 65 601-665 60-166 (257)
484 2d9n_A Cleavage and polyadenyl 97.1 0.00021 7.3E-09 61.2 2.9 32 78-110 5-36 (77)
485 2k4m_A TR8_protein, UPF0146 pr 97.1 0.00069 2.4E-08 65.0 6.5 58 586-660 22-81 (153)
486 2l9w_A U4/U6 snRNA-associated- 97.0 0.0019 6.4E-08 58.8 8.6 73 165-237 21-97 (117)
487 3reo_A (ISO)eugenol O-methyltr 97.0 0.00031 1.1E-08 76.8 4.3 64 590-660 191-257 (368)
488 3sso_A Methyltransferase; macr 97.0 0.0015 5.1E-08 72.6 9.6 64 588-661 204-276 (419)
489 2cqe_A KIAA1064 protein; CCCH 97.0 0.00035 1.2E-08 62.7 3.6 27 79-106 9-35 (98)
490 4a6d_A Hydroxyindole O-methylt 97.0 0.00041 1.4E-08 75.4 5.0 67 593-660 171-239 (353)
491 2p41_A Type II methyltransfera 97.0 9E-05 3.1E-09 79.4 -0.7 60 598-660 79-143 (305)
492 4gqb_A Protein arginine N-meth 97.0 0.0013 4.3E-08 77.1 8.6 60 601-661 357-423 (637)
493 3ua3_A Protein arginine N-meth 97.0 0.001 3.5E-08 78.2 7.6 60 602-662 410-485 (745)
494 3p9c_A Caffeic acid O-methyltr 96.9 0.00049 1.7E-08 75.2 4.3 63 591-660 190-255 (364)
495 1fp1_D Isoliquiritigenin 2'-O- 96.8 0.00088 3E-08 73.0 5.0 63 591-660 198-263 (372)
496 2rhk_C Cleavage and polyadenyl 96.8 0.00038 1.3E-08 58.9 1.5 31 78-109 11-41 (72)
497 1i4w_A Mitochondrial replicati 96.7 0.0021 7.1E-08 70.3 7.1 74 581-661 36-117 (353)
498 3tka_A Ribosomal RNA small sub 96.7 0.0024 8.2E-08 69.1 7.3 75 588-666 44-121 (347)
499 3lst_A CALO1 methyltransferase 96.6 0.00054 1.9E-08 74.0 2.0 65 592-659 175-242 (348)
500 2c7p_A Modification methylase 96.6 0.0014 4.6E-08 71.0 5.1 53 602-661 11-64 (327)
No 1
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=100.00 E-value=1e-44 Score=407.22 Aligned_cols=299 Identities=27% Similarity=0.442 Sum_probs=243.5
Q ss_pred ccccccCCCCChHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCchhhhhhhcccCCCCccccccccCCCCccceeeEEEE
Q 003969 301 RDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFS 380 (783)
Q Consensus 301 ~~~vcpLqhl~YeeQL~~K~~~v~~~L~ri~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~l~~Ii~SP~~~gYRNK~eft 380 (783)
.|+||+||||+|++||++|++ +|+|+++ +. + ++++||.+||||||++|+
T Consensus 86 ~CGGC~lqh~~y~~Ql~~K~~----~l~r~~~------------------------~~--~-~~~~s~~~~~YRnk~~~~ 134 (425)
T 2jjq_A 86 KCGGCTLQHLNYDYQLEFKRK----KLKRILG------------------------FE--V-EVVPSPKIFGHRNRIDLA 134 (425)
T ss_dssp ----CTTTTBCHHHHHHHHHH----HHHHHHS------------------------SC--C-EEECCSCSSSCBCEEEEE
T ss_pred CCCCccCcCCCHHHHHHHHHH----HHHHccC------------------------CC--C-ceecCCCcCCccceEEEE
Confidence 799999999999999999999 7888762 21 3 688899999999999999
Q ss_pred EEeecCCcceEeeeccccCCCc-ceeeCCCCCcCCCHHHHHHHHHHHHHHHhCCCCcccccccCCcceEEEEeecCCCCC
Q 003969 381 VGYSLQAKPTVGFMLGNFREGV-TAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGK 459 (783)
Q Consensus 381 vg~~~~G~~~vGF~~g~~~~gs-~~Vv~~~~C~iis~~l~~i~~~~~~~l~~s~l~~yd~~~~~G~wR~L~VR~s~~~~~ 459 (783)
|+. |+ +||+ ..++ |.|+++++|+++++.+++++..+++++...++++|+..++.|+||++++|.+..
T Consensus 135 v~~---g~--~Gf~----~~~s~~~iv~i~~C~i~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~g~lr~~~vr~~~~--- 202 (425)
T 2jjq_A 135 ITK---DG--IGFR----ERGKWWKIVDIDECPVFGKTSREAIERLKEFIEEEKISVWNIKKDEGFLRYMVLREGKF--- 202 (425)
T ss_dssp EET---TE--EEEE----C--CTTSEEECSCBTTTBHHHHHHHHHHHHHHHHHTCCBBBTTTTBCSEEEEEEEECTT---
T ss_pred ecC---CC--eEEe----eCCCCCcEEECcCCccCCHHHHHHHHHHHHHHHHcCCCccccccCCCcceEEEEEEccC---
Confidence 984 44 8996 6788 999999999999999999999999999999999999999999999999997532
Q ss_pred CCccccceecccccccceEEEEEEecCCCcchhhhhHHHHHHHHHHHhccccCCCCCCceEEEEEccCCCccccCCCCCc
Q 003969 460 PLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL 539 (783)
Q Consensus 460 ~~~~~~~~~~~~~~~~gevmliv~v~~~~l~~~~~~~~~~~L~~~~~~~~~~~~p~~~v~sl~~q~~~~~sn~~~~d~~~ 539 (783)
+|++||++....... ++ | + ..+ .+.++|++......+...
T Consensus 203 ---------------~g~~~v~l~~~~~~~--~~-------l-~--------~~~--~~~~i~~~~~~~~~~~~~----- 242 (425)
T 2jjq_A 203 ---------------TEEVMVNFVTKEGNL--PD-------P-T--------NYF--DFDSIYWSVNRSKSDVSY----- 242 (425)
T ss_dssp ---------------TCCEEEEEEESSSCC--CC-------C-T--------TTC--CCSEEEEEECCSSSCCSC-----
T ss_pred ---------------CCCEEEEEEeCchhH--HH-------H-h--------hcC--CeeEEEEEcCCCCCceec-----
Confidence 257898876654311 11 1 0 112 257777764332211110
Q ss_pred eeccCCCCCCCCCccccccccceEEeeCCeEEEECCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHH
Q 003969 540 RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTL 619 (783)
Q Consensus 540 ~~l~~~~~~g~~~~~~l~G~~~I~E~i~gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~L 619 (783)
+ ....++|..+++|.++|++|+++|.+|||+|+.+++.|+.++.+ +.++.+|||+|||+|++++.|
T Consensus 243 ---------g--~~~~l~G~~~i~e~~~g~~f~~~~~~F~q~n~~~~e~l~~~~~~---~~~~~~VLDlgcG~G~~sl~l 308 (425)
T 2jjq_A 243 ---------G--DIERFWGKEFIRERLDDVDYLIHPNSFFQTNSYQAVNLVRKVSE---LVEGEKILDMYSGVGTFGIYL 308 (425)
T ss_dssp ---------C--EEEEEEECSCEEEEETTEEEEECTTSCCCSBHHHHHHHHHHHHH---HCCSSEEEEETCTTTHHHHHH
T ss_pred ---------c--eEEEEECCCeEEEEECCEEEEEccccccccCHHHHHHHHHHhhc---cCCCCEEEEeeccchHHHHHH
Confidence 1 22356789999999999999999999999999999999999988 356789999999999999999
Q ss_pred hhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHHhhhcCCCcccccccccCCchhhhhhhhccCCCC
Q 003969 620 AHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRD 699 (783)
Q Consensus 620 A~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~~l~~~~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (783)
|+.+.+|+|||+++.|++.|++|+..|++. ++|+++|+.+++..
T Consensus 309 a~~~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~----------------------------------- 352 (425)
T 2jjq_A 309 AKRGFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVK----------------------------------- 352 (425)
T ss_dssp HHTTCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCT-----------------------------------
T ss_pred HHcCCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCcc-----------------------------------
Confidence 999899999999999999999999999998 99999998753210
Q ss_pred CCCCCCCCCCCCCCCCccCCCCCCCCCCCCccccccccccCCCCCCCCCCceEEEECCCCCCCcHHHHHHHHhccCCCcE
Q 003969 700 NVPENEGCSGQDPENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRL 779 (783)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~ivDPPR~Gl~~~vi~~lr~~~~~~rl 779 (783)
.| |++|+||||.|+++.++++|+.. ++.++
T Consensus 353 -----------------------------------------------~f--D~Vv~dPPr~g~~~~~~~~l~~l-~p~gi 382 (425)
T 2jjq_A 353 -----------------------------------------------GF--DTVIVDPPRAGLHPRLVKRLNRE-KPGVI 382 (425)
T ss_dssp -----------------------------------------------TC--SEEEECCCTTCSCHHHHHHHHHH-CCSEE
T ss_pred -----------------------------------------------CC--CEEEEcCCccchHHHHHHHHHhc-CCCcE
Confidence 14 79999999999999999999986 89999
Q ss_pred EEe
Q 003969 780 LHI 782 (783)
Q Consensus 780 vYV 782 (783)
|||
T Consensus 383 vyv 385 (425)
T 2jjq_A 383 VYV 385 (425)
T ss_dssp EEE
T ss_pred EEE
Confidence 998
No 2
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=100.00 E-value=2.9e-40 Score=371.90 Aligned_cols=301 Identities=22% Similarity=0.328 Sum_probs=233.6
Q ss_pred ccccccCCCCChHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCchhhhhhhcccCCCCccccccccCCCCccceeeEEEE
Q 003969 301 RDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFS 380 (783)
Q Consensus 301 ~~~vcpLqhl~YeeQL~~K~~~v~~~L~ri~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~l~~Ii~SP~~~gYRNK~eft 380 (783)
.|+||+||||+|++||++|++.|.++|+|+ - +.+++++ +||||||++|+
T Consensus 86 ~CGGC~~qh~~y~~Ql~~K~~~v~~~l~~~-~----------------------------~~~~~~~--~~~YRnr~~~~ 134 (433)
T 1uwv_A 86 VCGGCQQQHASVDLQQRSKSAALARLMKHD-V----------------------------SEVIADV--PWGYRRRARLS 134 (433)
T ss_dssp TBTTCSCTTBCHHHHHHHHHHHHHHHHTSC-C----------------------------CEEECCC--SSSCBSEEEEE
T ss_pred CCCCccccCCCHHHHHHHHHHHHHHHHHHh-h----------------------------cccccCC--ccccCceEEEe
Confidence 699999999999999999999999999874 0 2234443 69999999999
Q ss_pred EEee-cCCcceEeeeccccCCCcceeeCCCCCcCCCHHHHHHHHHHHHHHHhCCCCcccccccCCcceEEEEeecCCCCC
Q 003969 381 VGYS-LQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGK 459 (783)
Q Consensus 381 vg~~-~~G~~~vGF~~g~~~~gs~~Vv~~~~C~iis~~l~~i~~~~~~~l~~s~l~~yd~~~~~G~wR~L~VR~s~~~~~ 459 (783)
|+++ .+|++.+||+ ..++|.|+++++|+++++.+++++..++++++..++ .|.++++.+|.+.
T Consensus 135 ~~~~~~~~~~~~Gf~----~~~s~~iv~i~~C~i~~~~~~~~~~~l~~~~~~~~~--------~~~~~~i~~~~~~---- 198 (433)
T 1uwv_A 135 LNYLPKTQQLQMGFR----KAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQA--------MRHLGHVELVQAT---- 198 (433)
T ss_dssp EEEETTTTEEEEEEE----BTTSSCEEECSCCTTBCHHHHHHHHHHHHHHTTCGG--------GGGEEEEEEEEET----
T ss_pred eeEccCCCcEEEEEE----cCCCCcEEECccCcCCCHHHHHHHHHHHHHHHhcCC--------CCCccEEEEEEeC----
Confidence 9864 3566788996 678999999999999999999999999999876432 3779999999752
Q ss_pred CCccccceecccccccceEEEEEEecCCCcchhhhhHHHHHHHHHHHhccccCCCCCCceEEEEEccCCCccccCCCCCc
Q 003969 460 PLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPL 539 (783)
Q Consensus 460 ~~~~~~~~~~~~~~~~gevmliv~v~~~~l~~~~~~~~~~~L~~~~~~~~~~~~p~~~v~sl~~q~~~~~sn~~~~d~~~ 539 (783)
.+..|++. ....+++.. ...+..+.+.. ..+++++.. ..++
T Consensus 199 ---------------~~~~l~~~--~~~~l~~~~-~~~~~~~~~~~------------~~~~~~~~~---------~~~~ 239 (433)
T 1uwv_A 199 ---------------SGTLMILR--HTAPLSSAD-REKLERFSHSE------------GLDLYLAPD---------SEIL 239 (433)
T ss_dssp ---------------TEEEEEEE--ESSCCCHHH-HHHHHHHHHHH------------TCEEEEESS---------SSCC
T ss_pred ---------------CCcEEEEE--ecCCCCHHH-HHHHHHHhhcc------------cEEEEEECC---------CCeE
Confidence 13444432 223344321 11222222211 134554311 1112
Q ss_pred eeccCCCCCCCCCccccccccceEEeeCCeEEEECCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHH
Q 003969 540 RLLSIPKADGEPEESNDVVEARIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTL 619 (783)
Q Consensus 540 ~~l~~~~~~g~~~~~~l~G~~~I~E~i~gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~L 619 (783)
. .++|...+++ ++|++|.++|++|||+|+..++.|+.++++++...++.+|||||||+|++++.|
T Consensus 240 ~--------------~l~g~~~~~~-~~g~~~~~~~~~f~q~n~~~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~l 304 (433)
T 1uwv_A 240 E--------------TVSGEMPWYD-SNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPL 304 (433)
T ss_dssp E--------------EEECCCCEEE-ETTEEEECCSSSCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHH
T ss_pred E--------------EEeCCCcEEE-ECCEEEEECcccccccCHHHHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHH
Confidence 1 2346666777 899999999999999999999999999999998778889999999999999999
Q ss_pred hhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHHHhhhcCCCcccccccccCCchhhhhhhhccCCCC
Q 003969 620 AHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSLLKDYLNPLREEDEHASEGSNKEITIAEEKDSSRD 699 (783)
Q Consensus 620 A~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~~l~~~~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (783)
++.+.+|+|||+++.|++.|++|++.|++.|++|+++|+.+.+..+...
T Consensus 305 a~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~------------------------------- 353 (433)
T 1uwv_A 305 ATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWA------------------------------- 353 (433)
T ss_dssp HTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGG-------------------------------
T ss_pred HhhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhh-------------------------------
Confidence 9999999999999999999999999999999999999987643211000
Q ss_pred CCCCCCCCCCCCCCCCccCCCCCCCCCCCCccccccccccCCCCCCCCCCceEEEECCCCCCCcHHHHHHHHhccCCCcE
Q 003969 700 NVPENEGCSGQDPENDIADSNCPEGSGKEPQSQLQKDCTSEGNSLAQPFKNVVAIVDPPRGGLHPTVIKILRTHARLQRL 779 (783)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~ivDPPR~Gl~~~vi~~lr~~~~~~rl 779 (783)
+ ..| |++|+||||.|++ .++++|... .+++|
T Consensus 354 -----------------------------------------~----~~f--D~Vv~dPPr~g~~-~~~~~l~~~-~p~~i 384 (433)
T 1uwv_A 354 -----------------------------------------K----NGF--DKVLLDPARAGAA-GVMQQIIKL-EPIRI 384 (433)
T ss_dssp -----------------------------------------T----TCC--SEEEECCCTTCCH-HHHHHHHHH-CCSEE
T ss_pred -----------------------------------------c----CCC--CEEEECCCCccHH-HHHHHHHhc-CCCeE
Confidence 0 135 7999999999997 789999986 88999
Q ss_pred EEe
Q 003969 780 LHI 782 (783)
Q Consensus 780 vYV 782 (783)
|||
T Consensus 385 vyv 387 (433)
T 1uwv_A 385 VYV 387 (433)
T ss_dssp EEE
T ss_pred EEE
Confidence 998
No 3
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=100.00 E-value=3.2e-39 Score=356.09 Aligned_cols=271 Identities=17% Similarity=0.216 Sum_probs=201.9
Q ss_pred ccccccCCCCChHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCchhhhhhhcccCCCCccccccccCCCCccceeeEEEE
Q 003969 301 RDVVTPLAHMSYSVQLEHKKNSIAQMLKKLTRNARKACPNGVSLPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFS 380 (783)
Q Consensus 301 ~~~vcpLqhl~YeeQL~~K~~~v~~~L~ri~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~l~~Ii~SP~~~gYRNK~eft 380 (783)
.|++|+|||++|++||++|++.|.++|+|++. . .+ ++++++ +||||||++|+
T Consensus 3 gC~gc~~~~~~y~~Ql~~K~~~v~~~l~r~~~-------------------------~-~~-~~~~~~-~~~yRnr~~~~ 54 (369)
T 3bt7_A 3 HMTPEHLPTEQYEAQLAEKVVRLQSMMAPFSD-------------------------L-VP-EVFRSP-VSHYRMRAEFR 54 (369)
T ss_dssp CCCCSSCCGGGHHHHHHHHHHHHHHHHTTTCC-------------------------C-CC-EEECCC-SSSCBSEEEEE
T ss_pred CCCccccCCCCHHHHHHHHHHHHHHHHHhcCC-------------------------C-CC-CccCCC-ccccceEEEEE
Confidence 59999999999999999999999999998751 0 01 344454 79999999999
Q ss_pred EEeecCCcceEeeeccccCCCcceeeCCCCCcCCCHHHHHHHHHHHHHHHhCCCCcccccccCCcceEEEEeecCCCCCC
Q 003969 381 VGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRSPGKP 460 (783)
Q Consensus 381 vg~~~~G~~~vGF~~g~~~~gs~~Vv~~~~C~iis~~l~~i~~~~~~~l~~s~l~~yd~~~~~G~wR~L~VR~s~~~~~~ 460 (783)
|+.. .|...+||+ ..++|.++++.+|++.++.+++++..+++++...+ .. +.. +.++.++.+
T Consensus 55 v~~~-~~~~~~G~~----~~~s~~iv~i~~C~i~~~~i~~~l~~l~~~~~~~~-----~~-r~~-~~~~~~~~~------ 116 (369)
T 3bt7_A 55 IWHD-GDDLYHIIF----DQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNP-----VL-RHK-LFQIDYLTT------ 116 (369)
T ss_dssp EEEE-TTEEEEEEE----CTTTCCEEECSCCTTBCHHHHHHHHHHHHHHTTCH-----HH-HTT-EEEEEEEEC------
T ss_pred EEEc-CCcEEEEEE----ECCCCCEEeCcCCccCCHHHHHHHHHHHHHHHhCc-----cc-cce-eEEEEEEec------
Confidence 9853 455677885 67899999999999999999999999988875421 00 011 223333321
Q ss_pred CccccceecccccccceEEEEEEecCCCcchhhhhHHHHHHHHHHHhccccCCCCCCceEEEEEccCCCccccCCCCCce
Q 003969 461 LDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVIQDHQGVSNVAPADAPLR 540 (783)
Q Consensus 461 ~~~~~~~~~~~~~~~gevmliv~v~~~~l~~~~~~~~~~~L~~~~~~~~~~~~p~~~v~sl~~q~~~~~sn~~~~d~~~~ 540 (783)
.+|++||++.... .++. .+......|.+.+. ...+...++.. + .
T Consensus 117 -------------~~g~~~v~~~~~~-~~~~-~~~~~~~~l~~~~~--------~~~i~~~~~~~----~-----~---- 160 (369)
T 3bt7_A 117 -------------LSNQAVVSLLYHK-KLDD-EWRQEAEALRDALR--------AQNLNVHLIGR----A-----T---- 160 (369)
T ss_dssp -------------TTCEEEEEEEESS-CCCH-HHHHHHHHHHHHHH--------TTTCEEEEEEE----E-----T----
T ss_pred -------------CCCcEEEEEEECC-CCCH-HHHHHHHHHHHhCc--------CCeeEEEEEeC----C-----C----
Confidence 1368888775543 3432 12223333433331 11121111100 0 0
Q ss_pred eccCCCCCCCCCccccccccceEEee--CC--eEEEECCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHH
Q 003969 541 LLSIPKADGEPEESNDVVEARIHDSI--SN--LRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIG 616 (783)
Q Consensus 541 ~l~~~~~~g~~~~~~l~G~~~I~E~i--~g--l~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~ 616 (783)
....++|.+++.|.+ +| +.|+++|.+|||+|+.+++.|+.++++++... +.+|||||||+|+|+
T Consensus 161 -----------~~~~~~G~~~i~e~~~~~g~~~~~~~~~~~F~Q~n~~~~~~l~~~~~~~~~~~-~~~vLDl~cG~G~~~ 228 (369)
T 3bt7_A 161 -----------KTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGS-KGDLLELYCGNGNFS 228 (369)
T ss_dssp -----------TEEEESSCSEEEEECCBTTBCCEEEEETTSCCCSBHHHHHHHHHHHHHHTTTC-CSEEEEESCTTSHHH
T ss_pred -----------ceEEEcCCCEEEEEeccCCceEEEEECCCCeecCCHHHHHHHHHHHHHHhhcC-CCEEEEccCCCCHHH
Confidence 012346888898887 78 88999999999999999999999999988754 578999999999999
Q ss_pred HHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHH
Q 003969 617 LTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665 (783)
Q Consensus 617 l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~~l 665 (783)
++||+.+.+|+|||+++.|++.|++|++.||+.|++|+++|++++++.+
T Consensus 229 l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~ 277 (369)
T 3bt7_A 229 LALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAM 277 (369)
T ss_dssp HHHGGGSSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHH
T ss_pred HHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHH
Confidence 9999998999999999999999999999999999999999999987654
No 4
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=99.90 E-value=3.8e-23 Score=229.26 Aligned_cols=238 Identities=8% Similarity=0.019 Sum_probs=167.3
Q ss_pred CCCCccceeeEEE--EEEe-----ecCCc-ceEeeeccccCCCc---ceeeCCCCCcCCCHHH-HHHHHHH---HHHHHh
Q 003969 367 SPLVNGYRNKCEF--SVGY-----SLQAK-PTVGFMLGNFREGV---TAVEEPVDCPNVSEIA-CKYASIF---QEFLQQ 431 (783)
Q Consensus 367 SP~~~gYRNK~ef--tvg~-----~~~G~-~~vGF~~g~~~~gs---~~Vv~~~~C~iis~~l-~~i~~~~---~~~l~~ 431 (783)
+..+|.|||++++ .+|. +.+|+ ...||+ ..++ +.|++..+|++..+.+ +++.+++ +.++..
T Consensus 16 ~~~pw~y~n~~~~~~~~g~~v~v~~~~g~~l~~g~~----~~~s~i~~ri~~~~~~~i~~~~~~~~~~~a~~~r~~~~~~ 91 (385)
T 2b78_A 16 RGVQLLSSRDYPNLNLDNQVVQLYSDADIFLGTAYL----SKQNKGVGWLISPKKVSLNVTYFIKLFQWSKDKRKNFAHS 91 (385)
T ss_dssp HTCCEEEGGGSTTCCCCSEEEEEECTTCCEEEEEEE----EEETTEEEEEEESSCCCCCHHHHHHHHHHHHHTTHHHHHC
T ss_pred cCCCeEEHHHhCCCCCCCCEEEEEcCCCCEEEEEEE----CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 4557999999998 5542 23455 567775 4455 6788888998877643 4444444 888887
Q ss_pred CCCCcccccccCC-cceEEEEeecCCCCCCCccccceecccccccceEEEEEEecCCCcchhhhhHHHHHHHHHHHhccc
Q 003969 432 SDLPVWNRFKNSG-FWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGAT 510 (783)
Q Consensus 432 s~l~~yd~~~~~G-~wR~L~VR~s~~~~~~~~~~~~~~~~~~~~~gevmliv~v~~~~l~~~~~~~~~~~L~~~~~~~~~ 510 (783)
.+.+.|....+.| +|+.|+|+.. |++|++. +.+... ......|.+.|.+.
T Consensus 92 ~~~~~yr~~~~egd~l~gl~vd~~---------------------g~~~vv~-~~~~~~-----~~~~~~i~~~l~~~-- 142 (385)
T 2b78_A 92 KLTTAYRLFNQDGDSFGGVTIDCY---------------------GDFVLFS-WYNSFV-----YQIRDEIVAAFRQV-- 142 (385)
T ss_dssp SSCCEEEEEEGGGGTCTTEEEEEE---------------------TTEEEEE-ECSHHH-----HHTHHHHHHHHHHH--
T ss_pred CCCceEEEEeCCCCCCCceEEEEE---------------------CCEEEEE-ECcHHH-----HHhHHHHHHHHHHH--
Confidence 7789999999987 6999999852 4566554 443221 12234455555431
Q ss_pred cCCCCCCceEEEEEccCCCccccCCCCCceeccCCCCCCCCCcccccccc---ceEEeeCCeEEEECCC-----ccccCC
Q 003969 511 ASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEA---RIHDSISNLRFCISPT-----AFFQVN 582 (783)
Q Consensus 511 ~~~p~~~v~sl~~q~~~~~sn~~~~d~~~~~l~~~~~~g~~~~~~l~G~~---~I~E~i~gl~f~isp~-----sFfQvN 582 (783)
.+ .+.++|++.... .+ .. ...+++|.. ++.-.-+|++|.+++. +|| .|
T Consensus 143 --~~--~~~~i~~~~~~~-~~----~~--------------~~~~l~G~~~~~~~~v~e~g~~f~v~~~~~~~t~ff-~~ 198 (385)
T 2b78_A 143 --YP--NFLGAYEKIRFK-GI----DN--------------VSAHLYGQEAPEQFLILENGISYNVFLNDGLMTGIF-LD 198 (385)
T ss_dssp --ST--TCSEEEEEECC---------C--------------CEEEEEESCCCSSEEEEETTEEEEECSSSSSCCSSC-GG
T ss_pred --hC--CCCEEEEechhh-cC----Cc--------------cceeecCCCCCceEEEEECCEEEEEeccccccCCcC-Cc
Confidence 11 156787753211 11 01 112345653 5532228999999999 999 88
Q ss_pred HHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh-CCEEEEEeCCHHHHHHHHHHHHHcCCC--cEEEEEccHH
Q 003969 583 TLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIK--NCRFVCAKAE 659 (783)
Q Consensus 583 ~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~-~~~VigVE~s~~AIe~Ak~Na~~ngl~--nv~f~~gDae 659 (783)
...+..++...+ .++.+|||+|||+|++++.+|+. +.+|+|||+++.|++.|++|++.|++. +++|+++|+.
T Consensus 199 ~~~~~~~~~~~~-----~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~ 273 (385)
T 2b78_A 199 QRQVRNELINGS-----AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVF 273 (385)
T ss_dssp GHHHHHHHHHTT-----TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHH
T ss_pred HHHHHHHHHHHh-----cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHH
Confidence 888887775332 35789999999999999999986 469999999999999999999999997 8999999999
Q ss_pred HHHHHHH
Q 003969 660 DVMGSLL 666 (783)
Q Consensus 660 d~l~~l~ 666 (783)
++++.+.
T Consensus 274 ~~l~~~~ 280 (385)
T 2b78_A 274 DYFKYAR 280 (385)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887653
No 5
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=99.89 E-value=1.6e-22 Score=223.66 Aligned_cols=235 Identities=14% Similarity=0.128 Sum_probs=162.0
Q ss_pred CCCCccceeeEEE--------EEEeecCCc-ceEeeeccccCCCc---ceeeCCC-CCcCCCHHHHHHHH-HH---HHHH
Q 003969 367 SPLVNGYRNKCEF--------SVGYSLQAK-PTVGFMLGNFREGV---TAVEEPV-DCPNVSEIACKYAS-IF---QEFL 429 (783)
Q Consensus 367 SP~~~gYRNK~ef--------tvg~~~~G~-~~vGF~~g~~~~gs---~~Vv~~~-~C~iis~~l~~i~~-~~---~~~l 429 (783)
.+.+|+||||+++ .|.. +|+ ..+||+ ..++ +.|++.. +|++..+ +.+.+. ++ +.+.
T Consensus 15 ~~~p~~yrn~~~~~~~~~g~v~v~~--~g~~l~~g~~----~~~s~~~~ri~~~~~~~~i~~~-~~~~l~~~~~~r~~~~ 87 (382)
T 1wxx_A 15 SRHLWVFRRDVVSGPETPGLYPVYW--GRRFLALALY----NPHTDLAVRAYRFAPAEDPVAA-LLENLAQALARREAVL 87 (382)
T ss_dssp TTCCEECGGGEEECCSSCEEEEEEE--TTEEEEEEEE----CTTSSSCEEEEESSCCSCHHHH-HHHHHHHHHHHHHHHH
T ss_pred cCCCeEEhhhhccCCCCCeEEEEEE--CCEEEEEEEE----CCCCCEEEEEEECCCCCCcCHH-HHHHHHHHHHHHHHHH
Confidence 4667999999999 8875 565 567885 5556 7888877 7987666 333222 22 1222
Q ss_pred HhCCCCcccccccCC-cceEEEEeecCCCCCCCccccceecccccccceEEEEEEecCCCcchhhhhHHHHHHHHHHHhc
Q 003969 430 QQSDLPVWNRFKNSG-FWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAG 508 (783)
Q Consensus 430 ~~s~l~~yd~~~~~G-~wR~L~VR~s~~~~~~~~~~~~~~~~~~~~~gevmliv~v~~~~l~~~~~~~~~~~L~~~~~~~ 508 (783)
...+.+.|+..++.| +|+.|+||.. |++|+++..+ .. +......+.+.|.+.
T Consensus 88 ~~~~~~~yr~~~~~~d~l~~l~vd~~---------------------g~~~vv~~~~-~~-----~~~~~~~i~~~l~~~ 140 (382)
T 1wxx_A 88 RQDPEGGYRLVHAEGDLLPGLVVDYY---------------------AGHAVVQATA-HA-----WEGLLPQVAEALRPH 140 (382)
T ss_dssp HHCTTSEEEEEEGGGGTCTTEEEEEE---------------------TTEEEEEECS-HH-----HHTTHHHHHHHHGGG
T ss_pred hcCCCCeEEEEeCCCCCCCcEEEEEE---------------------CCEEEEEECc-HH-----HHHHHHHHHHHHHHH
Confidence 224789999998776 8999999852 4677765442 21 112345566666431
Q ss_pred cccCCCCCCceEEEEEccCCCccccCCCCCceeccCCCCCCCCCcccccccc--ceEEeeCCeEEEECCC-----ccccC
Q 003969 509 ATASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEA--RIHDSISNLRFCISPT-----AFFQV 581 (783)
Q Consensus 509 ~~~~~p~~~v~sl~~q~~~~~sn~~~~d~~~~~l~~~~~~g~~~~~~l~G~~--~I~E~i~gl~f~isp~-----sFfQv 581 (783)
+ .++|+. .....+..... .....+++|.. .+....+|++|.+++. +||+.
T Consensus 141 -------~--~~i~~~-~~~~~~~~~~~-------------~~~~~~l~G~~~~~~~~~e~g~~f~i~~~~~~~~g~f~~ 197 (382)
T 1wxx_A 141 -------V--QSVLAK-NDARTRELEGL-------------PLYVRPLLGEVPERVQVQEGRVRYLVDLRAGQKTGAYLD 197 (382)
T ss_dssp -------C--SEEEEE-ECCTHHHHTTC-------------CCEEEEEESCCCSEEEEEETTEEEEEECSTTSCCCCCGG
T ss_pred -------h--hEEEEc-CCchhhhhcCC-------------CcccceecCCCCceEEEEECCEEEEEEchhcccCccccc
Confidence 1 577765 22211110000 00122345653 6777779999999998 78886
Q ss_pred CHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 582 NTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 582 N~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
.+..... +. .. ++.+|||+|||+|++++.+++.+.+|+|||+++.+++.|++|++.|++.|++|+++|+.++
T Consensus 198 ~~~~~~~----~~---~~-~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~ 269 (382)
T 1wxx_A 198 QRENRLY----ME---RF-RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDL 269 (382)
T ss_dssp GHHHHHH----GG---GC-CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHH
T ss_pred hHHHHHH----HH---hc-CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHH
Confidence 6543221 22 23 6789999999999999999998889999999999999999999999998899999999998
Q ss_pred HHHHH
Q 003969 662 MGSLL 666 (783)
Q Consensus 662 l~~l~ 666 (783)
+..+.
T Consensus 270 ~~~~~ 274 (382)
T 1wxx_A 270 LRRLE 274 (382)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 6
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=99.89 E-value=6.5e-22 Score=219.75 Aligned_cols=233 Identities=11% Similarity=0.055 Sum_probs=165.1
Q ss_pred eeeEEEEEEeecCCc-ceEeeeccccCCCc---ceeeCCC-CCcCCCHHHHHHHHHHHHHHHhC----CCCcccccccCC
Q 003969 374 RNKCEFSVGYSLQAK-PTVGFMLGNFREGV---TAVEEPV-DCPNVSEIACKYASIFQEFLQQS----DLPVWNRFKNSG 444 (783)
Q Consensus 374 RNK~eftvg~~~~G~-~~vGF~~g~~~~gs---~~Vv~~~-~C~iis~~l~~i~~~~~~~l~~s----~l~~yd~~~~~G 444 (783)
++..-+.|. +.+|+ ..+||+ ..++ +.|+++. +|++..+.+.+.+....++++.. +...|+...+.|
T Consensus 35 ~~g~~v~v~-~~~g~~l~~G~~----~~~s~~~~ri~~~~~~~~i~~~~~~~~l~~a~~~~~~~~~~~~~~~yrl~~~eg 109 (396)
T 3c0k_A 35 SLGETIDIV-DHQGKWLARGAY----SPASQIRARVWTFDPSESIDIAFFSRRLQQAQKWRDWLAQKDGLDSYRLIAGES 109 (396)
T ss_dssp CTTCEEEEE-CTTCCEEEEEEE----CTTSSEEEEEEESCTTCCCSHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEGGG
T ss_pred CCCCEEEEE-cCCCCEEEEEEE----CCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCC
Confidence 444334553 34566 467875 5666 7888888 99999998888877777666654 789999999999
Q ss_pred -cceEEEEeecCCCCCCCccccceecccccccceEEEEEEecCCCcchhhhhHHHHHHHHHHHhccccCCCCCCceEEEE
Q 003969 445 -FWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGATASSPSLPLTALVI 523 (783)
Q Consensus 445 -~wR~L~VR~s~~~~~~~~~~~~~~~~~~~~~gevmliv~v~~~~l~~~~~~~~~~~L~~~~~~~~~~~~p~~~v~sl~~ 523 (783)
+|+.|+|+.. |++|++.... ... ......+.+.|.+. +.+.++|+
T Consensus 110 d~l~gl~vd~~---------------------g~~~v~~~~~-~~~-----~~~~~~i~~~l~~~-------~~~~~i~~ 155 (396)
T 3c0k_A 110 DGLPGITIDRF---------------------GNFLVLQLLS-AGA-----EYQRAALISALQTL-------YPECSIYD 155 (396)
T ss_dssp GTCTTEEEEEE---------------------TTEEEEEECS-HHH-----HHTHHHHHHHHHHH-------CTTSEEEE
T ss_pred CCCCceEEEEE---------------------CCEEEEEECC-HHH-----HHHHHHHHHHHHHh-------cCCCEEEE
Confidence 8999999852 4677665432 211 12234454555431 13567877
Q ss_pred EccCCCccccCCCCCceeccCCCCCCCCCccccccc---cceEEeeCCeEEEECCC-----ccccCCHHHHHHHHHHHhh
Q 003969 524 QDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVE---ARIHDSISNLRFCISPT-----AFFQVNTLAAEKLYSLGGD 595 (783)
Q Consensus 524 q~~~~~sn~~~~d~~~~~l~~~~~~g~~~~~~l~G~---~~I~E~i~gl~f~isp~-----sFfQvN~~~ae~L~~~i~~ 595 (783)
.. ....+....- .....+++|. .++.+..+|++|.+++. +|||.++.... .+..
T Consensus 156 ~~-~~~~~~~~g~-------------~~~~~~l~G~~~~~~~~~~~~g~~f~v~~~~~~~tgff~~~~~~~~----~l~~ 217 (396)
T 3c0k_A 156 RS-DVAVRKKEGM-------------ELTQGPVTGELPPALLPIEEHGMKLLVDIQHGHKTGYYLDQRDSRL----ATRR 217 (396)
T ss_dssp EE-CCTHHHHTTC-------------CCEEEEEESCCCCSSEEEEETTEEEEECTTTSSTTSSCGGGHHHHH----HHHH
T ss_pred eC-CchhHhhcCC-------------CccceeEcCCCCCceEEEEECCEEEEEeccccccCCcCcCHHHHHH----HHHH
Confidence 62 2111100000 0112345676 37888999999999998 99998776532 2333
Q ss_pred hccCCCCCeEEEecCCcCHHHHHHhhh-CCEEEEEeCCHHHHHHHHHHHHHcCC-C-cEEEEEccHHHHHHHHH
Q 003969 596 WADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGI-K-NCRFVCAKAEDVMGSLL 666 (783)
Q Consensus 596 ~l~~~~g~~VLDLgCGtGti~l~LA~~-~~~VigVE~s~~AIe~Ak~Na~~ngl-~-nv~f~~gDaed~l~~l~ 666 (783)
+ .++.+|||+|||+|++++.+++. +.+|+|||+++.|++.|++|++.|++ . +++|+++|+.+++..+.
T Consensus 218 ~---~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~ 288 (396)
T 3c0k_A 218 Y---VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYR 288 (396)
T ss_dssp H---CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHH
T ss_pred h---hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHH
Confidence 3 36789999999999999999998 57999999999999999999999999 7 89999999999876543
No 7
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=99.89 E-value=5.3e-22 Score=220.39 Aligned_cols=241 Identities=17% Similarity=0.182 Sum_probs=170.0
Q ss_pred CCccceeeEEEE-----EEe-----ecCCc-ceEeeeccccCCCc---ceeeCCC-CCcCCCHHHHHHHHHHHHHHHhC-
Q 003969 369 LVNGYRNKCEFS-----VGY-----SLQAK-PTVGFMLGNFREGV---TAVEEPV-DCPNVSEIACKYASIFQEFLQQS- 432 (783)
Q Consensus 369 ~~~gYRNK~eft-----vg~-----~~~G~-~~vGF~~g~~~~gs---~~Vv~~~-~C~iis~~l~~i~~~~~~~l~~s- 432 (783)
.+|.|||++++. +|. +.+|+ ..+||+ ..++ +.|++.. +|++..+.+++.+....++++..
T Consensus 18 ~pw~yrn~i~~~~~~~~~g~~v~v~~~~g~~l~~G~~----~~~s~~~~ri~~~~~~~~i~~~~~~~~l~~~~~~~~~~~ 93 (396)
T 2as0_A 18 AMIVFKKGVVRVEGDIKPGDIVEVYTRGGKFLGKGFA----NPNSNIMVRIVTKDKDVEINKDLFKRRIKKANEYRKKVL 93 (396)
T ss_dssp CCEEEGGGEEEEESCCCTTCEEEEEETTCCEEEEEEE----CTTSSEEEEEEESCTTCCCSHHHHHHHHHHHHHHHHHTS
T ss_pred CcEEEHHHccccCCCCCCCCEEEEEcCCCCEEEEEEE----CCCChHHeehhccCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 359999999998 332 13455 456774 6666 8888888 99999999999999888888887
Q ss_pred -CCCcccccccCC-cceEEEEeecCCCCCCCccccceecccccccceEEEEEEecCCCcchhhhhHHHHHHHHHHHhccc
Q 003969 433 -DLPVWNRFKNSG-FWRQLTVREGRSPGKPLDVENLEVNISEVNISEVMLIAQVSSATFDDAVVNSEFERLAKAFAAGAT 510 (783)
Q Consensus 433 -~l~~yd~~~~~G-~wR~L~VR~s~~~~~~~~~~~~~~~~~~~~~gevmliv~v~~~~l~~~~~~~~~~~L~~~~~~~~~ 510 (783)
+...|....+.| +|+.|+|+.. |++|++... ...+ ......+.+.+.+.
T Consensus 94 ~~~~~yrl~~~~gd~l~gl~vd~~---------------------g~~~v~~~~-~~~~-----~~~~~~i~~~l~~~-- 144 (396)
T 2as0_A 94 KYTNVYRMVYGEADYLPGLIVDRF---------------------NDIASLQIS-SAGM-----ERFKLDVAEAIMEV-- 144 (396)
T ss_dssp CCCSEEEEEEGGGGTCTTEEEEEE---------------------TTEEEEEEC-CHHH-----HTTHHHHHHHHHHH--
T ss_pred cCCCeEEEEecCCCCCCcEEEEEE---------------------CCEEEEEEC-cHHH-----HHHHHHHHHHHHHh--
Confidence 788999988888 8999999852 467766543 2211 11223444444331
Q ss_pred cCCCCCCceEEEEEccCCCccccCCCCCceeccCCCCCCCCCcccccccc--ceEEeeCCeEEEECCC----ccccCCHH
Q 003969 511 ASSPSLPLTALVIQDHQGVSNVAPADAPLRLLSIPKADGEPEESNDVVEA--RIHDSISNLRFCISPT----AFFQVNTL 584 (783)
Q Consensus 511 ~~~p~~~v~sl~~q~~~~~sn~~~~d~~~~~l~~~~~~g~~~~~~l~G~~--~I~E~i~gl~f~isp~----sFfQvN~~ 584 (783)
.+ .+.++|++ .....+....- ......++|.. .+....+|++|.+++. +|||....
T Consensus 145 --~~--~~~~i~~~-~~~~~~~~~~~-------------~~~~~~l~g~~~~~~~~~e~g~~~~~~~~~~~tg~f~~~~~ 206 (396)
T 2as0_A 145 --EP--GIETVFEK-NTGRSRRREGL-------------PEIERVLLGKEKYRTIIQEGRAKFIVDMRGQKTGFFLDQRE 206 (396)
T ss_dssp --CT--TCCEEEEE-ECSHHHHHTTC-------------CCEEEEEEESCCCEEEEEETTEEEEEESSSSSSCCCSTTHH
T ss_pred --CC--CCCEEEEe-CCcchHhhcCC-------------CcccceecCCCCceEEEEeCCEEEEEeccccccCccCCHHH
Confidence 01 35788776 22111110000 01122345654 5666679999999985 69986654
Q ss_pred HHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHHHH
Q 003969 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAEDVM 662 (783)
Q Consensus 585 ~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~-~~~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~~gDaed~l 662 (783)
. +..+..++ .++.+|||+|||+|++++.+++. +.+|+|||+++.|++.|++|++.|++. +++|+++|+.+++
T Consensus 207 ~----~~~~~~~~--~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~ 280 (396)
T 2as0_A 207 N----RLALEKWV--QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEM 280 (396)
T ss_dssp H----HHHHGGGC--CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHH
T ss_pred H----HHHHHHHh--hCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHH
Confidence 3 22233332 36789999999999999999998 569999999999999999999999997 8999999999987
Q ss_pred HHHH
Q 003969 663 GSLL 666 (783)
Q Consensus 663 ~~l~ 666 (783)
+.+.
T Consensus 281 ~~~~ 284 (396)
T 2as0_A 281 EKLQ 284 (396)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
No 8
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.64 E-value=4.3e-16 Score=140.22 Aligned_cols=78 Identities=21% Similarity=0.373 Sum_probs=71.0
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
--.+.+|||+|||+.+++++|+++|+++| |..+++.+ ++++|||||+|.+.++|++||+.|||..|+||+|+|..
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34467899999999999999999999996 77777765 57789999999999999999999999999999999999
Q ss_pred cCC
Q 003969 237 VVP 239 (783)
Q Consensus 237 A~p 239 (783)
|+|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 976
No 9
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=99.63 E-value=8.2e-16 Score=162.36 Aligned_cols=103 Identities=19% Similarity=0.164 Sum_probs=87.0
Q ss_pred ccccccc--ceEEeeCCeEEEECCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCC--EEEEE
Q 003969 554 SNDVVEA--RIHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG--MVIGI 629 (783)
Q Consensus 554 ~~l~G~~--~I~E~i~gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~--~VigV 629 (783)
..++|.. .+++ .+|++|.++|..|||.++..++.++. .. .+.++.+|||+|||+|.+++.+|+.+. +|+||
T Consensus 75 ~~l~G~~~~~~~~-e~g~~f~~~~~~~f~~~~~~~e~~~~--~~--~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~v 149 (272)
T 3a27_A 75 KILYGKETETIHK-EYGCLFKLDVAKIMWSQGNIEERKRM--AF--ISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAI 149 (272)
T ss_dssp EEEECSCCEEEEE-ETTEEEEEETTTSCCCGGGHHHHHHH--HT--SCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEE
T ss_pred EEEeCCCcEEEEE-ECCEEEEEechhEEECCCchHHHHHH--HH--hcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEE
Confidence 3456765 3322 48999999999999999988877752 22 345788999999999999999999864 99999
Q ss_pred eCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 630 EMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 630 E~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
|+++.|++.|++|++.|++.|+.|+++|+.++
T Consensus 150 D~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~ 181 (272)
T 3a27_A 150 EKNPTAYHYLCENIKLNKLNNVIPILADNRDV 181 (272)
T ss_dssp ECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC
T ss_pred eCCHHHHHHHHHHHHHcCCCCEEEEECChHHc
Confidence 99999999999999999999999999998753
No 10
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.60 E-value=1.7e-15 Score=157.38 Aligned_cols=139 Identities=21% Similarity=0.280 Sum_probs=91.2
Q ss_pred cccccccccccCCCCCCCccccCcCccCCCCCCCCCcchHHHHhhhhhcccchhhhhhhhhHHhhhhccccCCCCCC-CC
Q 003969 84 SLCSYFRKVGTCCHGSTCRYAHGEEELRIRPDNTWDPTSERAKKARKLEDGDKCEAKEDAVEEVMMTEAVVDGDGDG-DQ 162 (783)
Q Consensus 84 ~~c~~~~~~~~c~~g~~c~~ahg~~elr~~~~~~~~~~s~r~k~~~k~e~~E~~~~~e~~~~~~~~~~~~~~~~~~~-~~ 162 (783)
.+|.||.+ |.|.+|+.|.|.|.. |+.+...+..-....-++--.+.. . +...+-.+-+ ..
T Consensus 71 ~~C~ffak-G~C~~G~~C~y~H~l------------Pt~~d~~~~~~~~~~~D~fGr~k~-----~-~~~d~~~g~gs~~ 131 (240)
T 3u1l_A 71 FFCLFFAK-GMCCLGPKCEYLHHI------------PDEEDIGKLALRTEVLDCFGREKF-----A-DYREDMGGIGSFR 131 (240)
T ss_dssp SBCHHHHT-TCCSCGGGCSSBBSC------------CCHHHHHHHHHHCSSBCTTSSBCG-----G-GTC---------C
T ss_pred eEcCcccc-CCCCCCCCCCccCCC------------CCccchhhhcccccCcccccchhc-----c-cchhcccCcCccc
Confidence 49999988 899999999999952 333222211100000011000000 0 0000000111 13
Q ss_pred CccccEEEeCCCccc---------CHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCcc-----
Q 003969 163 DVELSKCLVHLPRKW---------HSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISI----- 227 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~---------~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~----- 227 (783)
...-+|||+|||..+ ++++|+++|++|| |..++|+ +++|||||+|.+.++|++||+.|||..+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~--~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV--ESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE--GGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE--CCCCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 345579999999998 7999999999996 7666665 4689999999999999999999999999
Q ss_pred -------CCceeEEEecCCCCcc
Q 003969 228 -------GNKTLKVANVVPRSFD 243 (783)
Q Consensus 228 -------~Gr~L~V~~A~pr~~~ 243 (783)
.|+.|.|..|++.+.+
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp TTGGGGGGSCCCEEEECC-----
T ss_pred ccccccCCCCEEEEEEccCCCCH
Confidence 8999999999876544
No 11
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.57 E-value=4.7e-15 Score=136.65 Aligned_cols=79 Identities=19% Similarity=0.238 Sum_probs=71.0
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc--ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG--ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~--v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~p 239 (783)
.....+|||+|||+.+++++|+++|+++| |..+.+..++++|||||+|.+.++|++||+.|||..++||.|+|..|..
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 44578999999999999999999999998 6667766678899999999999999999999999999999999998864
Q ss_pred C
Q 003969 240 R 240 (783)
Q Consensus 240 r 240 (783)
.
T Consensus 105 ~ 105 (111)
T 2jvr_A 105 P 105 (111)
T ss_dssp -
T ss_pred C
Confidence 4
No 12
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.56 E-value=3.1e-15 Score=131.51 Aligned_cols=76 Identities=13% Similarity=0.060 Sum_probs=64.3
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhcc---ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 003969 166 LSKCLVHLPRKWHSDNLKKFLADHG---ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 166 ~~i~V~nLp~~~~~~~Lkklf~~~~---v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
++|||+|||+.+++++|+++|+++| |...++.. ++++|||||+|.+.++|++||+.|||..++||.|+|..|.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999998 66666655 5778999999999999999999999999999999999987
Q ss_pred CCC
Q 003969 239 PRS 241 (783)
Q Consensus 239 pr~ 241 (783)
|.+
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 764
No 13
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.55 E-value=8.6e-15 Score=134.83 Aligned_cols=77 Identities=21% Similarity=0.305 Sum_probs=70.0
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec--cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCCc
Q 003969 166 LSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK--KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRSF 242 (783)
Q Consensus 166 ~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~--~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr~~ 242 (783)
.+|||+|||+.+++++|+++|++|| |..++|+. ++++|||||+|.+.|+|++||+.|||+.+.||.|+|..|.++..
T Consensus 6 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~ 85 (115)
T 4f25_A 6 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 85 (115)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC
T ss_pred CEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCccc
Confidence 4799999999999999999999996 77777776 45789999999999999999999999999999999999987643
No 14
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.53 E-value=2e-14 Score=131.95 Aligned_cols=79 Identities=16% Similarity=0.085 Sum_probs=71.2
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
+.+..+|||+|||+.+++++|+++|++|| |..+++++ ++++|||||+|.+.++|++||+.|||..+.||.|+|..
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45567899999999999999999999996 77777765 67899999999999999999999999999999999998
Q ss_pred cCCC
Q 003969 237 VVPR 240 (783)
Q Consensus 237 A~pr 240 (783)
|..+
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8544
No 15
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.53 E-value=2.6e-14 Score=122.78 Aligned_cols=76 Identities=17% Similarity=0.273 Sum_probs=69.1
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 003969 166 LSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (783)
Q Consensus 166 ~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr 240 (783)
++|||+|||+.+++++|+++|+++| |...+++. ++++|||||+|.+.++|++|++.|||..+.|+.|+|..|+++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 5799999999999999999999995 66666664 566899999999999999999999999999999999999876
Q ss_pred C
Q 003969 241 S 241 (783)
Q Consensus 241 ~ 241 (783)
+
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 16
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.52 E-value=1.2e-14 Score=128.43 Aligned_cols=75 Identities=17% Similarity=0.255 Sum_probs=67.0
Q ss_pred cEEEeCCCcccCHHHHHHHhhhcc--ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHH-cCCccCCceeEEEecCC
Q 003969 167 SKCLVHLPRKWHSDNLKKFLADHG--ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEEL-EGISIGNKTLKVANVVP 239 (783)
Q Consensus 167 ~i~V~nLp~~~~~~~Lkklf~~~~--v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~L-nG~~~~Gr~L~V~~A~p 239 (783)
.|||+|||+.+++++|+++|+++| |..+++++ ++++|||||+|.+.++|++||+.| ||..++||+|+|..|.|
T Consensus 3 ~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~ 82 (91)
T 2lxi_A 3 IVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDP 82 (91)
T ss_dssp EEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCS
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCC
Confidence 599999999999999999999997 56666654 578999999999999999999988 56789999999999987
Q ss_pred CC
Q 003969 240 RS 241 (783)
Q Consensus 240 r~ 241 (783)
++
T Consensus 83 ~~ 84 (91)
T 2lxi_A 83 KP 84 (91)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 17
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.52 E-value=2.6e-14 Score=123.89 Aligned_cols=79 Identities=18% Similarity=0.249 Sum_probs=68.0
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 163 DVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
.+..+|||+|||+.+++++|+++|+++| |....+.. ++++|||||+|.+.++|++|++.|||..++|+.|+|..|
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 3456899999999999999999999995 76667665 457899999999999999999999999999999999999
Q ss_pred CCCC
Q 003969 238 VPRS 241 (783)
Q Consensus 238 ~pr~ 241 (783)
++|+
T Consensus 84 ~~kp 87 (87)
T 3bs9_A 84 TRKP 87 (87)
T ss_dssp C---
T ss_pred CCCC
Confidence 8764
No 18
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.52 E-value=2.3e-14 Score=126.39 Aligned_cols=72 Identities=15% Similarity=0.180 Sum_probs=65.9
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 164 VELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 164 ~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
.+.+|||+||++.+++++|+++|.++| |...++. .++|||||+|.++++|++||+.|||..+.||+|+|..|
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~--~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPY--LNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEc--CCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 356899999999999999999999996 6666654 48999999999999999999999999999999999988
No 19
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=4.5e-14 Score=125.60 Aligned_cols=80 Identities=21% Similarity=0.297 Sum_probs=71.5
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhccceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCC
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRS 241 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr~ 241 (783)
.....+|||+|||+.+++++|+++|+++|.....++.++++|||||+|.+.++|++||+.|||..+.|+.|+|..|+++.
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 34456899999999999999999999997433666778899999999999999999999999999999999999998763
No 20
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.50 E-value=4.6e-13 Score=132.38 Aligned_cols=98 Identities=18% Similarity=0.273 Sum_probs=81.2
Q ss_pred eCCeEEEECCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHH
Q 003969 566 ISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAE 644 (783)
Q Consensus 566 i~gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~ 644 (783)
+.|..|.+.+..|.+......+.++..+..... .++.+|||+|||+|.+++.++... .+|+|||+++.+++.|++|++
T Consensus 10 ~~g~~l~~~~~~~rp~~~~~~~~l~~~l~~~~~-~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~ 88 (189)
T 3p9n_A 10 AGGRRIAVPPRGTRPTTDRVRESLFNIVTARRD-LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIE 88 (189)
T ss_dssp TTTCEEECCSCCC---CHHHHHHHHHHHHHHSC-CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHH
T ss_pred cCCcEecCCCCCCccCcHHHHHHHHHHHHhccC-CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHH
Confidence 357788888878888888888888888776543 367899999999999999777764 689999999999999999999
Q ss_pred HcCCCcEEEEEccHHHHHHH
Q 003969 645 INGIKNCRFVCAKAEDVMGS 664 (783)
Q Consensus 645 ~ngl~nv~f~~gDaed~l~~ 664 (783)
.+++.+++|+++|+.+++..
T Consensus 89 ~~~~~~v~~~~~d~~~~~~~ 108 (189)
T 3p9n_A 89 ALGLSGATLRRGAVAAVVAA 108 (189)
T ss_dssp HHTCSCEEEEESCHHHHHHH
T ss_pred HcCCCceEEEEccHHHHHhh
Confidence 99998999999999987653
No 21
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=1e-13 Score=123.28 Aligned_cols=81 Identities=19% Similarity=0.155 Sum_probs=71.9
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
..+..+|||+|||+.+++++|+++|+++| |..++++. ++++|||||+|.+.++|++||+.|||..++|+.|+|..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34567899999999999999999999995 66666665 56789999999999999999999999999999999999
Q ss_pred cCCCCc
Q 003969 237 VVPRSF 242 (783)
Q Consensus 237 A~pr~~ 242 (783)
|+++..
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 987654
No 22
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.49 E-value=3.5e-14 Score=127.10 Aligned_cols=73 Identities=16% Similarity=0.170 Sum_probs=65.1
Q ss_pred cEEEeCCCcccCHHHHHHHhhhcc---ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCc----cCCceeEEE
Q 003969 167 SKCLVHLPRKWHSDNLKKFLADHG---ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGIS----IGNKTLKVA 235 (783)
Q Consensus 167 ~i~V~nLp~~~~~~~Lkklf~~~~---v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~----~~Gr~L~V~ 235 (783)
.|||+|||+.+++++|+++|++|| +..+++.+ +++||||||+|.+.++|++||+.|||.. ++||+|+|.
T Consensus 11 tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~ 90 (95)
T 2lkz_A 11 TIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVD 90 (95)
T ss_dssp EEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEE
T ss_pred EEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEE
Confidence 599999999999999999999997 44556554 6789999999999999999999999984 899999999
Q ss_pred ecCC
Q 003969 236 NVVP 239 (783)
Q Consensus 236 ~A~p 239 (783)
.|+.
T Consensus 91 ~Aks 94 (95)
T 2lkz_A 91 FAKS 94 (95)
T ss_dssp ECCC
T ss_pred EccC
Confidence 8853
No 23
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=8.1e-14 Score=123.99 Aligned_cols=79 Identities=18% Similarity=0.201 Sum_probs=70.6
Q ss_pred CccccEEEeCCCcccCHHHHH----HHhhhcc-ceeeEeec-cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 163 DVELSKCLVHLPRKWHSDNLK----KFLADHG-ILYKSAKK-KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~~~~~Lk----klf~~~~-v~~~~i~~-~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
..+.+|||+|||+.+++++|+ ++|+++| |..+++.+ ...+|||||+|.+.++|++||+.|||..++||.|+|..
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 445789999999999999999 9999996 77777776 23389999999999999999999999999999999999
Q ss_pred cCCCC
Q 003969 237 VVPRS 241 (783)
Q Consensus 237 A~pr~ 241 (783)
|++++
T Consensus 87 a~~~~ 91 (96)
T 2dgx_A 87 ATGAS 91 (96)
T ss_dssp CCCSS
T ss_pred cCCCC
Confidence 98764
No 24
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.49 E-value=2e-14 Score=129.04 Aligned_cols=77 Identities=13% Similarity=0.124 Sum_probs=69.5
Q ss_pred ccccEEEeCCCc------ccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCC-ce
Q 003969 164 VELSKCLVHLPR------KWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGN-KT 231 (783)
Q Consensus 164 ~~~~i~V~nLp~------~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~G-r~ 231 (783)
.+..|||+|||+ .+++++|+++|+++| |..+++++ ++++|||||+|.+.++|++||+.|||..+.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 345799999999 999999999999996 77777765 5678999999999999999999999999999 99
Q ss_pred eEEEecCCC
Q 003969 232 LKVANVVPR 240 (783)
Q Consensus 232 L~V~~A~pr 240 (783)
|+|..|.|+
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999999764
No 25
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=7.5e-14 Score=127.32 Aligned_cols=80 Identities=21% Similarity=0.386 Sum_probs=72.0
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec--cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK--KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~--~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
.....+|||+|||+.+++++|+++|+++| |..+++.. ++++|||||+|.+.++|++|++.|||..++|+.|+|..|+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 105 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 45567899999999999999999999995 77777765 4578999999999999999999999999999999999998
Q ss_pred CCC
Q 003969 239 PRS 241 (783)
Q Consensus 239 pr~ 241 (783)
++.
T Consensus 106 ~~~ 108 (109)
T 2err_A 106 ARV 108 (109)
T ss_dssp CSC
T ss_pred CCc
Confidence 764
No 26
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=4.7e-14 Score=128.74 Aligned_cols=79 Identities=9% Similarity=0.054 Sum_probs=69.5
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcC--CccCCceeEEEecC
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEG--ISIGNKTLKVANVV 238 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG--~~~~Gr~L~V~~A~ 238 (783)
..+..+|||+|||+.+++++|+++|++|| |..+++++. ||||||+|.+.++|++||+.|+| ..+.||.|+|..|+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~--kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 45567899999999999999999999996 777776654 89999999999999999999974 78999999999997
Q ss_pred CCCc
Q 003969 239 PRSF 242 (783)
Q Consensus 239 pr~~ 242 (783)
++..
T Consensus 91 ~~~~ 94 (105)
T 1sjq_A 91 HKEL 94 (105)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 7653
No 27
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=8.9e-14 Score=121.98 Aligned_cols=79 Identities=18% Similarity=0.145 Sum_probs=71.2
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhccceeeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~v~~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
.....+|||+|||+.+++++|+++|++++|..+++++ ++++|||||+|.+.++|++||+ |||..++||.|+|..|.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTSCCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhCCceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 3446789999999999999999999999887777765 5678999999999999999999 99999999999999997
Q ss_pred CCC
Q 003969 239 PRS 241 (783)
Q Consensus 239 pr~ 241 (783)
+++
T Consensus 86 ~~~ 88 (91)
T 2dgw_A 86 SGP 88 (91)
T ss_dssp SCC
T ss_pred cCC
Confidence 764
No 28
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.48 E-value=1.6e-13 Score=125.60 Aligned_cols=81 Identities=19% Similarity=0.261 Sum_probs=72.4
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
.....+|||+|||+.+++++|+++|+++| |..+++.. ++++|||||+|.+.++|++||+.|||..++|+.|+|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45567899999999999999999999995 77777765 46689999999999999999999999999999999999
Q ss_pred cCCCCc
Q 003969 237 VVPRSF 242 (783)
Q Consensus 237 A~pr~~ 242 (783)
|+++..
T Consensus 92 a~~~~~ 97 (115)
T 2dgo_A 92 ATRKPP 97 (115)
T ss_dssp SSCCCC
T ss_pred ccCCCC
Confidence 987754
No 29
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.4e-13 Score=123.21 Aligned_cols=81 Identities=21% Similarity=0.283 Sum_probs=72.5
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
..+..+|||+|||+.+++++|+++|+++| |..+++.+ ++++|||||+|.+.++|++||+.|||..++|+.|+|..
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45667899999999999999999999995 77777765 45789999999999999999999999999999999999
Q ss_pred cCCCCc
Q 003969 237 VVPRSF 242 (783)
Q Consensus 237 A~pr~~ 242 (783)
|+++..
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 977654
No 30
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.48 E-value=1.5e-13 Score=126.97 Aligned_cols=81 Identities=28% Similarity=0.346 Sum_probs=72.3
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 003969 163 DVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
+...+|||+|||+.+++++|+++|+++| |..+.+.. ++++|||||+|.+.++|++||+.|||..++|+.|+|..|+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 4456899999999999999999999995 77777766 5678999999999999999999999999999999999998
Q ss_pred CCCcc
Q 003969 239 PRSFD 243 (783)
Q Consensus 239 pr~~~ 243 (783)
++...
T Consensus 85 ~~~~~ 89 (116)
T 2fy1_A 85 KPSFQ 89 (116)
T ss_dssp CSSCS
T ss_pred CCCCC
Confidence 76543
No 31
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.1e-13 Score=122.39 Aligned_cols=81 Identities=16% Similarity=0.106 Sum_probs=72.2
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec--cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK--KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~--~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
.....+|||+|||+.+++++|+++|+++| |..+++.. ..++|||||+|.+.++|++||+.|||..+.|+.|+|..|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 44567899999999999999999999995 77777766 4568999999999999999999999999999999999998
Q ss_pred CCCc
Q 003969 239 PRSF 242 (783)
Q Consensus 239 pr~~ 242 (783)
++..
T Consensus 92 ~~~~ 95 (103)
T 2cqi_A 92 TPSS 95 (103)
T ss_dssp CTTC
T ss_pred CCcc
Confidence 7654
No 32
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.48 E-value=8.4e-14 Score=126.96 Aligned_cols=80 Identities=23% Similarity=0.327 Sum_probs=71.5
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
.....+|||+|||+.+++++|+++|+++| |...++.+ ++++|||||+|.+.++|++||+.|||..++|+.|+|..
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34457899999999999999999999996 66667665 46789999999999999999999999999999999999
Q ss_pred cCCCC
Q 003969 237 VVPRS 241 (783)
Q Consensus 237 A~pr~ 241 (783)
|++|.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 98775
No 33
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.48 E-value=1.1e-13 Score=122.72 Aligned_cols=78 Identities=17% Similarity=0.290 Sum_probs=70.2
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~p 239 (783)
..+|||+|||+.+++++|+++|+++| |...++.. ++++|||||+|.+.++|++||+.|||..++|+.|+|..|.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 45799999999999999999999996 66677665 46789999999999999999999999999999999999987
Q ss_pred CCc
Q 003969 240 RSF 242 (783)
Q Consensus 240 r~~ 242 (783)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 754
No 34
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.5e-13 Score=121.87 Aligned_cols=81 Identities=21% Similarity=0.394 Sum_probs=72.4
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec--cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK--KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~--~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
.....+|||+|||+.+++++|+++|+++| |..++++. ..++|||||+|.+.++|++||+.|||..|+|+.|+|..|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 45567899999999999999999999995 77777766 3468999999999999999999999999999999999998
Q ss_pred CCCc
Q 003969 239 PRSF 242 (783)
Q Consensus 239 pr~~ 242 (783)
++..
T Consensus 92 ~~~~ 95 (103)
T 2cq3_A 92 ARVM 95 (103)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 7753
No 35
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.1e-13 Score=122.33 Aligned_cols=79 Identities=16% Similarity=0.253 Sum_probs=70.4
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhcc-ceee-Eeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 163 DVELSKCLVHLPRKWHSDNLKKFLADHG-ILYK-SAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~-~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
.++.+|||+|||+.+++++|+++|+++| |... ++.+ ++++|||||+|.+.++|++||+.|||..++|+.|+|..
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4567899999999999999999999996 5555 6654 56789999999999999999999999999999999999
Q ss_pred cCCCC
Q 003969 237 VVPRS 241 (783)
Q Consensus 237 A~pr~ 241 (783)
|.++.
T Consensus 83 a~~~~ 87 (96)
T 1x5t_A 83 AFKKD 87 (96)
T ss_dssp SCCCC
T ss_pred ecccC
Confidence 98765
No 36
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.6e-13 Score=120.95 Aligned_cols=79 Identities=22% Similarity=0.308 Sum_probs=70.9
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 163 DVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
.+..+|||+|||+.+++++|+++|+++| |..+.+.+ ++++|||||+|.+.++|++||+.|||..|+|+.|+|..|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 3456899999999999999999999995 76677665 467899999999999999999999999999999999999
Q ss_pred CCCC
Q 003969 238 VPRS 241 (783)
Q Consensus 238 ~pr~ 241 (783)
.++.
T Consensus 83 ~~~~ 86 (95)
T 2dnz_A 83 TERL 86 (95)
T ss_dssp SCCC
T ss_pred cccc
Confidence 7764
No 37
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.48 E-value=1.1e-13 Score=121.43 Aligned_cols=80 Identities=25% Similarity=0.323 Sum_probs=71.6
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec--cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK--KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~--~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
..+..+|||+|||+.+++++|+++|+++| |...++.+ ++++|||||+|.+.++|++||+.|||..++|+.|+|..|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 34567899999999999999999999995 77777665 5678999999999999999999999999999999999987
Q ss_pred CCC
Q 003969 239 PRS 241 (783)
Q Consensus 239 pr~ 241 (783)
++.
T Consensus 85 ~~~ 87 (92)
T 2dgv_A 85 NAS 87 (92)
T ss_dssp CCS
T ss_pred CCC
Confidence 754
No 38
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=99.48 E-value=5e-13 Score=145.32 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=82.3
Q ss_pred eEEeeCCeEEEECCCccccC--CHHHHHHHHHHHhhhcc-CCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHH
Q 003969 562 IHDSISNLRFCISPTAFFQV--NTLAAEKLYSLGGDWAD-LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSD 638 (783)
Q Consensus 562 I~E~i~gl~f~isp~sFfQv--N~~~ae~L~~~i~~~l~-~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~ 638 (783)
+.-..+|++|.+.+..|+++ +..+... ..++.+++. ..++.+|||||||+|.+++.+++.+.+|+|||+++.|++.
T Consensus 112 ~~i~e~g~~f~v~~~~~~~tg~f~dq~~~-~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~ 190 (332)
T 2igt_A 112 WPLSLLGVEFLGRFTAFRHVGVFPEQIVH-WEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGW 190 (332)
T ss_dssp EEEEETTEEEEEECCSSSCCSCCGGGHHH-HHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred eEEEECCEEEEEecCccccceechHHHHH-HHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHH
Confidence 33345899999999999886 4443332 222333332 3456799999999999999999987799999999999999
Q ss_pred HHHHHHHcCCCc--EEEEEccHHHHHHHH
Q 003969 639 AHRNAEINGIKN--CRFVCAKAEDVMGSL 665 (783)
Q Consensus 639 Ak~Na~~ngl~n--v~f~~gDaed~l~~l 665 (783)
|++|++.|++.+ ++|+++|+.+++..+
T Consensus 191 a~~n~~~~gl~~~~v~~i~~D~~~~l~~~ 219 (332)
T 2igt_A 191 AKENQVLAGLEQAPIRWICEDAMKFIQRE 219 (332)
T ss_dssp HHHHHHHHTCTTSCEEEECSCHHHHHHHH
T ss_pred HHHHHHHcCCCccceEEEECcHHHHHHHH
Confidence 999999999974 999999999987654
No 39
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.48 E-value=1.1e-13 Score=124.24 Aligned_cols=80 Identities=20% Similarity=0.308 Sum_probs=72.1
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhccceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
..+..+|||+|||+.+++++|+++|++++|..+++++ ++++|||||+|.+.++|++|| .|||..++|+.|+|..|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~gi~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 4456789999999999999999999999988888776 467899999999999999999 89999999999999999
Q ss_pred CCCCc
Q 003969 238 VPRSF 242 (783)
Q Consensus 238 ~pr~~ 242 (783)
.++..
T Consensus 91 ~~~~~ 95 (103)
T 2dng_A 91 EGRKQ 95 (103)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87643
No 40
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.47 E-value=6.7e-14 Score=125.16 Aligned_cols=78 Identities=22% Similarity=0.244 Sum_probs=67.9
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
.....+|||+|||+.+++++|+++|+++| |.. .++. ++++|||||+|.+.++|++||+ |||..+.|+.|+|..
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 44567999999999999999999999995 333 2222 6889999999999999999999 999999999999999
Q ss_pred cCCCC
Q 003969 237 VVPRS 241 (783)
Q Consensus 237 A~pr~ 241 (783)
|+++.
T Consensus 92 a~~~~ 96 (101)
T 1fj7_A 92 PKGRD 96 (101)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 98764
No 41
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=2.2e-13 Score=122.21 Aligned_cols=81 Identities=23% Similarity=0.272 Sum_probs=72.6
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec--cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK--KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~--~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
..+..+|||+|||+.+++++|+++|+++| |..+++.. ++++|||||+|.+.++|++||+.|||..+.|+.|+|..|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 45677899999999999999999999995 76677665 5778999999999999999999999999999999999998
Q ss_pred CCCc
Q 003969 239 PRSF 242 (783)
Q Consensus 239 pr~~ 242 (783)
++..
T Consensus 92 ~~~~ 95 (103)
T 2d9p_A 92 RKEE 95 (103)
T ss_dssp SCCC
T ss_pred cccc
Confidence 7653
No 42
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=99.46 E-value=1.9e-13 Score=148.59 Aligned_cols=102 Identities=14% Similarity=0.218 Sum_probs=85.2
Q ss_pred ccccccc--eEEeeCCeEEEECCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCC
Q 003969 555 NDVVEAR--IHDSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMN 632 (783)
Q Consensus 555 ~l~G~~~--I~E~i~gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s 632 (783)
.++|... .....+|++|.+++..|||.+....+.+ .+..++ .++.+|||+|||+|.+++. ++.+.+|+|||++
T Consensus 151 ~l~G~~~~~~~~~e~g~~f~~d~~~~~~~~~~~~er~--~i~~~~--~~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s 225 (336)
T 2yx1_A 151 HLAGENRTLTIHKENGYRLWVDIAKVYFSPRLGGERA--RIMKKV--SLNDVVVDMFAGVGPFSIA-CKNAKKIYAIDIN 225 (336)
T ss_dssp EEEECCCCEEEEEETTEEEEEETTTSCCCGGGHHHHH--HHHHHC--CTTCEEEETTCTTSHHHHH-TTTSSEEEEEESC
T ss_pred EEeCCCCcEEEEEECCEEEEEehHHhccCCccHHHHH--HHHHhc--CCCCEEEEccCccCHHHHh-ccCCCEEEEEECC
Confidence 3455532 3334589999999999999998887776 344544 3678999999999999999 8877899999999
Q ss_pred HHHHHHHHHHHHHcCC-CcEEEEEccHHHH
Q 003969 633 ASAVSDAHRNAEINGI-KNCRFVCAKAEDV 661 (783)
Q Consensus 633 ~~AIe~Ak~Na~~ngl-~nv~f~~gDaed~ 661 (783)
+.|++.|++|++.|++ .+++|+++|+.++
T Consensus 226 ~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~ 255 (336)
T 2yx1_A 226 PHAIELLKKNIKLNKLEHKIIPILSDVREV 255 (336)
T ss_dssp HHHHHHHHHHHHHTTCTTTEEEEESCGGGC
T ss_pred HHHHHHHHHHHHHcCCCCcEEEEECChHHh
Confidence 9999999999999999 5799999998764
No 43
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.46 E-value=2.2e-13 Score=124.82 Aligned_cols=81 Identities=20% Similarity=0.342 Sum_probs=72.0
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
.....+|||+|||+.+++++|+++|++|| |..+++++ ++++|||||+|.+.++|++||+.|||..|+|+.|+|..
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34457899999999999999999999995 77777765 56789999999999999999999999999999999999
Q ss_pred cCCCCc
Q 003969 237 VVPRSF 242 (783)
Q Consensus 237 A~pr~~ 242 (783)
|+++..
T Consensus 102 a~~~~~ 107 (115)
T 2cpz_A 102 KRSKND 107 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCc
Confidence 987653
No 44
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.6e-13 Score=123.60 Aligned_cols=80 Identities=14% Similarity=0.132 Sum_probs=70.8
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
..++.+|||+|||+.+++++|+++|+++| |..+.+.. ++++|||||+|.+.++|++||+.|||..++|+.|+|..
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 33456799999999999999999999995 76777665 56689999999999999999999999999999999999
Q ss_pred cCCCC
Q 003969 237 VVPRS 241 (783)
Q Consensus 237 A~pr~ 241 (783)
|.+++
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 87654
No 45
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=6.5e-14 Score=128.56 Aligned_cols=77 Identities=16% Similarity=0.204 Sum_probs=70.0
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhccceeeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCC
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRS 241 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~v~~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr~ 241 (783)
..+|||+|||+.+++++|++||++++|..+.+.+ ++++|||||+|.++++|++|| .|||..++||.|+|..|.++.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~~ 94 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATERQ 94 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTSCCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccCCeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCccc
Confidence 5689999999999999999999999888787775 678999999999999999999 799999999999999887654
Q ss_pred c
Q 003969 242 F 242 (783)
Q Consensus 242 ~ 242 (783)
.
T Consensus 95 ~ 95 (109)
T 2dnn_A 95 W 95 (109)
T ss_dssp H
T ss_pred h
Confidence 4
No 46
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2.1e-13 Score=124.40 Aligned_cols=80 Identities=20% Similarity=0.177 Sum_probs=70.5
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ce--------eeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccC
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-IL--------YKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIG 228 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~--------~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~ 228 (783)
.....+|||+|||+.+++++|+++|+++| |. .+++.. ++++|||||+|.+.++|++||+.|||..|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45567899999999999999999999996 44 256554 567899999999999999999999999999
Q ss_pred CceeEEEecCCCC
Q 003969 229 NKTLKVANVVPRS 241 (783)
Q Consensus 229 Gr~L~V~~A~pr~ 241 (783)
|+.|+|..|+++.
T Consensus 92 g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 92 GSKLKVSLARKKP 104 (113)
T ss_dssp TEECEEECSSCCC
T ss_pred CCEEEEEECCCCC
Confidence 9999999997764
No 47
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.9e-13 Score=122.25 Aligned_cols=80 Identities=18% Similarity=0.190 Sum_probs=71.8
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
..+..+|||+|||+.+++++|+++|+++| |..+.+.+ ++++|||||+|.+.++|++||+.|||..++|+.|+|..
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 45567899999999999999999999995 77777654 56789999999999999999999999999999999999
Q ss_pred cCCCC
Q 003969 237 VVPRS 241 (783)
Q Consensus 237 A~pr~ 241 (783)
|+++.
T Consensus 89 a~~~~ 93 (102)
T 2cqb_A 89 AKPMR 93 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98764
No 48
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.46 E-value=1.6e-13 Score=118.92 Aligned_cols=76 Identities=16% Similarity=0.285 Sum_probs=68.0
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeecc-----CCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKK-----KGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~-----r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
..+|||+|||+.+++++|+++|+++| |....+... +++|||||+|.+.++|++|++.|||..++|+.|+|..|.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 45799999999999999999999996 666666552 278999999999999999999999999999999999886
Q ss_pred CC
Q 003969 239 PR 240 (783)
Q Consensus 239 pr 240 (783)
|.
T Consensus 84 ~~ 85 (88)
T 4a8x_A 84 AP 85 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 49
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=3.4e-13 Score=122.29 Aligned_cols=81 Identities=17% Similarity=0.256 Sum_probs=72.5
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHc------CCccCCc
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELE------GISIGNK 230 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~Ln------G~~~~Gr 230 (783)
..+..+|||+|||+.+++++|+++|.+|| |..+++.+ ++++|||||+|.+.++|++||+.|| |..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 45567899999999999999999999996 77777765 4678999999999999999999999 9999999
Q ss_pred eeEEEecCCCCc
Q 003969 231 TLKVANVVPRSF 242 (783)
Q Consensus 231 ~L~V~~A~pr~~ 242 (783)
.|+|..|.++..
T Consensus 92 ~l~v~~a~~~~~ 103 (111)
T 1x4h_A 92 QLKVDLAVTRDE 103 (111)
T ss_dssp EEEEECCCCCCC
T ss_pred EEEEEECCCCcc
Confidence 999999987643
No 50
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.46 E-value=2.3e-13 Score=123.15 Aligned_cols=78 Identities=19% Similarity=0.118 Sum_probs=68.2
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCc--cCCceeEEEecC
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGIS--IGNKTLKVANVV 238 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~--~~Gr~L~V~~A~ 238 (783)
..+.-.|||+|||+.+++++|+++|++|| |..+.+. ++||||||+|.+.++|++||+.|||.. +.||+|+|..|+
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~--~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM--PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE--cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 44566799999999999999999999996 6655554 468999999999999999999999986 789999999997
Q ss_pred CCC
Q 003969 239 PRS 241 (783)
Q Consensus 239 pr~ 241 (783)
++.
T Consensus 96 ~k~ 98 (100)
T 3r27_A 96 SQK 98 (100)
T ss_dssp CSC
T ss_pred ccc
Confidence 653
No 51
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.6e-13 Score=123.53 Aligned_cols=80 Identities=21% Similarity=0.324 Sum_probs=71.3
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhccceeeEeec-----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKK-----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~v~~~~i~~-----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
..+..+|||+|||+.+++++|+++|+++||..+.++. ++++|||||+|.+.++|++|| .|||..++|+.|+|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSCEEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCCceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3446789999999999999999999999977777665 456899999999999999999 9999999999999999
Q ss_pred cCCCCc
Q 003969 237 VVPRSF 242 (783)
Q Consensus 237 A~pr~~ 242 (783)
|.++..
T Consensus 91 a~~~~~ 96 (104)
T 1wi8_A 91 ADQAQD 96 (104)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 987643
No 52
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.46 E-value=1.8e-13 Score=118.10 Aligned_cols=76 Identities=17% Similarity=0.176 Sum_probs=67.7
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 163 DVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
.+..+|||+|||+.+++++|+++|+++| |....+.. ++++|||||+|.+.++|++|++.|||..++|+.|+|..|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4567899999999999999999999996 66666644 567899999999999999999999999999999999877
Q ss_pred C
Q 003969 238 V 238 (783)
Q Consensus 238 ~ 238 (783)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 53
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=2.4e-13 Score=121.35 Aligned_cols=80 Identities=20% Similarity=0.268 Sum_probs=71.6
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
..+..+|||+|||+.+++++|+++|+++| |..+.+.. ++++|||||+|.+.++|++||+.|||..++|+.|+|..|
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 34456899999999999999999999996 77777766 567899999999999999999999999999999999999
Q ss_pred CCCC
Q 003969 238 VPRS 241 (783)
Q Consensus 238 ~pr~ 241 (783)
+|++
T Consensus 94 ~~~~ 97 (100)
T 2do4_A 94 NSGP 97 (100)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8764
No 54
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.45 E-value=1.8e-13 Score=121.97 Aligned_cols=77 Identities=14% Similarity=0.152 Sum_probs=67.8
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-cee--------eEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccC
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILY--------KSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIG 228 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~--------~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~ 228 (783)
......|||+|||+.+++++|+++|+++| |.. .++.+ ++++|||||+|.+.++|++||+.|||..++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 34467899999999999999999999996 555 56654 567899999999999999999999999999
Q ss_pred CceeEEEecC
Q 003969 229 NKTLKVANVV 238 (783)
Q Consensus 229 Gr~L~V~~A~ 238 (783)
|+.|+|..|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999998773
No 55
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=2e-13 Score=122.47 Aligned_cols=80 Identities=18% Similarity=0.260 Sum_probs=71.8
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
..+..+|||+|||+.+++++|+++|+++| |..+.+.+ ++++|||||+|.+.++|++||+.|||..|+|+.|+|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 45567899999999999999999999995 77777765 46789999999999999999999999999999999999
Q ss_pred cCCCC
Q 003969 237 VVPRS 241 (783)
Q Consensus 237 A~pr~ 241 (783)
|+++.
T Consensus 92 a~~~~ 96 (103)
T 2cq0_A 92 AKPST 96 (103)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 98764
No 56
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=2.2e-13 Score=123.57 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=70.7
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec-cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 003969 163 DVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK-KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~-~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr 240 (783)
....+|||+|||+.+++++|+++|++|| |..+.++. ++++|||||+|.+.++|++||+.|||..++|+.|+|..|+++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 99 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSG 99 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccC
Confidence 3456899999999999999999999995 76677766 567999999999999999999999999999999999998765
Q ss_pred C
Q 003969 241 S 241 (783)
Q Consensus 241 ~ 241 (783)
.
T Consensus 100 ~ 100 (109)
T 1x4a_A 100 R 100 (109)
T ss_dssp C
T ss_pred C
Confidence 3
No 57
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=2.6e-13 Score=121.98 Aligned_cols=80 Identities=19% Similarity=0.256 Sum_probs=71.5
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
.....+|||+|||+.+++++|+++|+++| |..+.+.. ++++|||||+|.+.++|++||+.|||..++|+.|+|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45567899999999999999999999995 66666665 46789999999999999999999999999999999999
Q ss_pred cCCCC
Q 003969 237 VVPRS 241 (783)
Q Consensus 237 A~pr~ 241 (783)
|.++.
T Consensus 92 a~~~~ 96 (105)
T 1x5u_A 92 ASAHN 96 (105)
T ss_dssp TTTTS
T ss_pred CCCCC
Confidence 97764
No 58
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=1.7e-13 Score=121.69 Aligned_cols=79 Identities=22% Similarity=0.277 Sum_probs=70.4
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec-------cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEE
Q 003969 163 DVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK-------KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKV 234 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~-------~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V 234 (783)
.+..+|||+|||+.+++++|+++|+++| |..+.+.. ++++|||||+|.+.++|++||+.|||..++|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4456899999999999999999999995 77777664 156899999999999999999999999999999999
Q ss_pred EecCCCC
Q 003969 235 ANVVPRS 241 (783)
Q Consensus 235 ~~A~pr~ 241 (783)
..|+++.
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9997764
No 59
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.45 E-value=2e-13 Score=123.97 Aligned_cols=80 Identities=18% Similarity=0.170 Sum_probs=71.0
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
..+...|||+|||+.+++++|+++|+++| |..+.+.. ++++|||||+|.+.++|++||+.|||..++|+.|+|..
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34456899999999999999999999996 76777654 56789999999999999999999999999999999999
Q ss_pred cCCCC
Q 003969 237 VVPRS 241 (783)
Q Consensus 237 A~pr~ 241 (783)
|.+++
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 87654
No 60
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.45 E-value=3.2e-13 Score=121.44 Aligned_cols=81 Identities=16% Similarity=0.156 Sum_probs=71.8
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCccCC---ceeEE
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGN---KTLKV 234 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~G---r~L~V 234 (783)
.....+|||+|||+.+++++|+++|+++| |..+.+.+ ++++|||||+|.+.++|++||+.|||..+.| +.|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 34567899999999999999999999995 77777765 4568999999999999999999999999998 99999
Q ss_pred EecCCCCc
Q 003969 235 ANVVPRSF 242 (783)
Q Consensus 235 ~~A~pr~~ 242 (783)
..|+++..
T Consensus 92 ~~a~~~~~ 99 (105)
T 2dnh_A 92 KFADTDKE 99 (105)
T ss_dssp EESCSSCC
T ss_pred EECccCcc
Confidence 99987653
No 61
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=4.5e-13 Score=119.28 Aligned_cols=80 Identities=18% Similarity=0.274 Sum_probs=71.0
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
.....+|||+|||+.+++++|+++|+++| |..+.+++ ++++|||||+|.+.++|++||+ |||..++|+.|+|..
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 34567899999999999999999999995 76777765 5678999999999999999999 999999999999999
Q ss_pred cCCCCc
Q 003969 237 VVPRSF 242 (783)
Q Consensus 237 A~pr~~ 242 (783)
|.++..
T Consensus 86 a~~~~~ 91 (99)
T 2dgs_A 86 AEPRDS 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCcc
Confidence 987643
No 62
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=4.8e-13 Score=120.52 Aligned_cols=81 Identities=14% Similarity=0.196 Sum_probs=71.6
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec-----cCCccEEEEEeCCHHHHHHHHHHH-cCCccCCceeEE
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK-----KKGMTVGFVKFESVEQLKNAVEEL-EGISIGNKTLKV 234 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~-----~r~~gfgFVtF~s~Eea~kAIe~L-nG~~~~Gr~L~V 234 (783)
.....+|||+|||+.+++++|+++|++|| |..+++.+ ++++|||||+|.+.++|++||+.| ||..|.|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 45567899999999999999999999995 66666653 456899999999999999999999 999999999999
Q ss_pred EecCCCCc
Q 003969 235 ANVVPRSF 242 (783)
Q Consensus 235 ~~A~pr~~ 242 (783)
..|.++..
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99987643
No 63
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.45 E-value=1.5e-13 Score=121.63 Aligned_cols=79 Identities=16% Similarity=0.241 Sum_probs=69.6
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr 240 (783)
..+..+|||+|||+.+++++|+++|+++| |... ...++++|||||+|.+.++|++||+.|||..+.|+.|+|..|.++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 45667899999999999999999999995 4433 234788999999999999999999999999999999999999776
Q ss_pred C
Q 003969 241 S 241 (783)
Q Consensus 241 ~ 241 (783)
.
T Consensus 92 ~ 92 (96)
T 1fjc_A 92 G 92 (96)
T ss_dssp C
T ss_pred C
Confidence 4
No 64
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=3.2e-13 Score=125.96 Aligned_cols=79 Identities=9% Similarity=0.054 Sum_probs=69.4
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcC--CccCCceeEEEecC
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEG--ISIGNKTLKVANVV 238 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG--~~~~Gr~L~V~~A~ 238 (783)
..+.-.|||+|||+.+++++|+++|++|| |..+++++. +|||||+|.+.++|++||+.||| ..+.||.|+|..|+
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~--kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 105 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 105 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG--GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEcc
Confidence 44566799999999999999999999996 777776654 79999999999999999999984 78999999999998
Q ss_pred CCCc
Q 003969 239 PRSF 242 (783)
Q Consensus 239 pr~~ 242 (783)
++..
T Consensus 106 ~k~~ 109 (119)
T 2ad9_A 106 HKEL 109 (119)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 7654
No 65
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.45 E-value=1.9e-13 Score=119.51 Aligned_cols=76 Identities=20% Similarity=0.234 Sum_probs=68.1
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhccceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCC
Q 003969 164 VELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRS 241 (783)
Q Consensus 164 ~~~~i~V~nLp~~~~~~~Lkklf~~~~v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr~ 241 (783)
...+|||+|||+.+++++|+++|+++.|...++. +++|||||+|.+.++|++||+.|||..++|+.|+|..|....
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDYDLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSSCCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 4568999999999999999999999976666653 788999999999999999999999999999999999885543
No 66
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.45 E-value=8.9e-14 Score=135.43 Aligned_cols=78 Identities=10% Similarity=0.087 Sum_probs=69.2
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhcc---ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEE
Q 003969 163 DVELSKCLVHLPRKWHSDNLKKFLADHG---ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~~~~~Lkklf~~~~---v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~ 235 (783)
....+|||+|||+.+++++|+++|+++| |..++++. ++++|||||+|.+.++|++||+.|||+.|+||.|+|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3457899999999999999999999998 66667654 6789999999999999999999999999999999999
Q ss_pred ecCCC
Q 003969 236 NVVPR 240 (783)
Q Consensus 236 ~A~pr 240 (783)
.|.++
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 99765
No 67
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=2.1e-13 Score=123.83 Aligned_cols=78 Identities=14% Similarity=0.148 Sum_probs=68.2
Q ss_pred CCccccEEEeCCCc-ccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCC--ccCCceeEEEec
Q 003969 162 QDVELSKCLVHLPR-KWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGI--SIGNKTLKVANV 237 (783)
Q Consensus 162 ~~~~~~i~V~nLp~-~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~--~~~Gr~L~V~~A 237 (783)
.++..+|||+|||+ .+++++|+++|++|| |..+.+++ .+|||||+|.+.++|++||+.|||. .+.||+|+|..|
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 89 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN--KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLS 89 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS--SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEEC
Confidence 44567899999999 999999999999996 77676654 4699999999999999999999975 499999999999
Q ss_pred CCCC
Q 003969 238 VPRS 241 (783)
Q Consensus 238 ~pr~ 241 (783)
+++.
T Consensus 90 ~~~~ 93 (102)
T 1x4d_A 90 QKYK 93 (102)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 7654
No 68
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=2.1e-13 Score=121.90 Aligned_cols=80 Identities=18% Similarity=0.252 Sum_probs=68.6
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr 240 (783)
.....+|||+|||+.+++++|+++|++++ |.......++++|||||+|.+.++|++||+.|||..++|+.|+|..|+++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 34567899999999999999999999996 42222122678999999999999999999999999999999999999876
Q ss_pred C
Q 003969 241 S 241 (783)
Q Consensus 241 ~ 241 (783)
.
T Consensus 92 ~ 92 (101)
T 2fc9_A 92 G 92 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 69
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=2.7e-13 Score=121.71 Aligned_cols=81 Identities=21% Similarity=0.252 Sum_probs=72.4
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhh-cc-ceeeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCc-cCCceeEEE
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLAD-HG-ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGIS-IGNKTLKVA 235 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~-~~-v~~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~-~~Gr~L~V~ 235 (783)
..+..+|||+|||+.+++++|+++|++ +| |..+++.+ ++++|||||+|.+.++|++||+.|||.. +.|+.|+|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 345678999999999999999999999 96 77777765 5678999999999999999999999999 999999999
Q ss_pred ecCCCCc
Q 003969 236 NVVPRSF 242 (783)
Q Consensus 236 ~A~pr~~ 242 (783)
.|.++..
T Consensus 86 ~a~~~~~ 92 (104)
T 2dhg_A 86 VAIPKAS 92 (104)
T ss_dssp BCCCCCS
T ss_pred EccCCCc
Confidence 9977653
No 70
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=4.3e-13 Score=118.11 Aligned_cols=77 Identities=21% Similarity=0.302 Sum_probs=69.3
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
..+...|||+|||+.+++++|+++|+++| |....++. ++++|||||+|.+.++|++||+.|||..++|+.|+|..
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 45567899999999999999999999995 76777665 46789999999999999999999999999999999988
Q ss_pred cC
Q 003969 237 VV 238 (783)
Q Consensus 237 A~ 238 (783)
|+
T Consensus 92 a~ 93 (95)
T 2cqc_A 92 PS 93 (95)
T ss_dssp CS
T ss_pred cC
Confidence 75
No 71
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.43 E-value=2.7e-13 Score=127.81 Aligned_cols=82 Identities=12% Similarity=0.188 Sum_probs=71.1
Q ss_pred CCccccEEEeCCCcccCHHHHH----HHhhhcc-ceeeEeec-cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEE
Q 003969 162 QDVELSKCLVHLPRKWHSDNLK----KFLADHG-ILYKSAKK-KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lk----klf~~~~-v~~~~i~~-~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~ 235 (783)
..+..+|||+|||+.+++++|+ ++|++|| |..+.+.+ ++++|||||+|.+.++|++||+.|||..+.||.|+|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 3446689999999999999987 6899996 65566554 6889999999999999999999999999999999999
Q ss_pred ecCCCCcc
Q 003969 236 NVVPRSFD 243 (783)
Q Consensus 236 ~A~pr~~~ 243 (783)
.|+++...
T Consensus 106 ~a~~~~~~ 113 (127)
T 2a3j_A 106 FSETPQSQ 113 (127)
T ss_dssp ECCCCCHH
T ss_pred EccCcchh
Confidence 99877543
No 72
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.43 E-value=2.8e-13 Score=125.95 Aligned_cols=82 Identities=13% Similarity=0.111 Sum_probs=72.3
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
..+..+|||+|||+.+++++|+++|+++| |..+.++. ++++|||||+|.+.++|++||+.|||..|+|+.|+|..
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34467899999999999999999999996 66677664 56789999999999999999999999999999999999
Q ss_pred cCCCCcc
Q 003969 237 VVPRSFD 243 (783)
Q Consensus 237 A~pr~~~ 243 (783)
|.++...
T Consensus 99 a~~~~~~ 105 (126)
T 3ex7_B 99 CFVRGPP 105 (126)
T ss_dssp SEESSSC
T ss_pred ecCCCCC
Confidence 9776543
No 73
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.43 E-value=1e-13 Score=124.31 Aligned_cols=79 Identities=20% Similarity=0.345 Sum_probs=68.5
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhccceeeEeec-----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKK-----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~v~~~~i~~-----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
.....+|||+|||+.+++++|+++|+++||..+++++ ++++|||||+|.+.++|++|| .|||..++|+.|+|..
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSCEEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 3446789999999999999999999999977777654 456899999999999999999 9999999999999999
Q ss_pred cCCCC
Q 003969 237 VVPRS 241 (783)
Q Consensus 237 A~pr~ 241 (783)
|+++.
T Consensus 95 a~~~~ 99 (100)
T 2j76_E 95 ADQAQ 99 (100)
T ss_dssp CCCSC
T ss_pred ccCCC
Confidence 98764
No 74
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.43 E-value=1.7e-13 Score=115.72 Aligned_cols=70 Identities=19% Similarity=0.251 Sum_probs=63.2
Q ss_pred cEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 167 SKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 167 ~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
+|||+|||+.+++++|+++|+++| |....+.. ++++|||||+|.+.++|++|++ |||..++|+.|+|..|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 599999999999999999999995 66666654 5678999999999999999998 9999999999999765
No 75
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.43 E-value=2.2e-13 Score=121.71 Aligned_cols=75 Identities=16% Similarity=0.206 Sum_probs=67.6
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 003969 164 VELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (783)
Q Consensus 164 ~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr 240 (783)
...+|||+|||+.+++++|+++|+++| |...++. +++|||||+|.+.++|++||+.|||..|+|+.|+|..|++|
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY--PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 346899999999999999999999996 6655554 67899999999999999999999999999999999988765
No 76
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=4.8e-13 Score=117.69 Aligned_cols=77 Identities=14% Similarity=0.286 Sum_probs=69.0
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
..+..+|||+|||+.+++++|+++|+++| |....+.. ++++|||||+|.+.++|++||+.|||..+.|+.|+|..
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 44567899999999999999999999995 76777665 56789999999999999999999999999999999987
Q ss_pred cC
Q 003969 237 VV 238 (783)
Q Consensus 237 A~ 238 (783)
|+
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 77
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=1.8e-13 Score=125.15 Aligned_cols=79 Identities=13% Similarity=0.183 Sum_probs=70.5
Q ss_pred CccccEEEeCCCcccCHHHHH---HHhhhcc-ceeeEeecc-------CCccEEEEEeCCHHHHHHHHHHHcCCccCCce
Q 003969 163 DVELSKCLVHLPRKWHSDNLK---KFLADHG-ILYKSAKKK-------KGMTVGFVKFESVEQLKNAVEELEGISIGNKT 231 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~~~~~Lk---klf~~~~-v~~~~i~~~-------r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~ 231 (783)
....+|||+|||+.+++++|+ ++|++|| |..+.+.+. +++|||||+|.+.++|++||+.|||+.+.|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 345689999999999999999 9999996 777777652 45699999999999999999999999999999
Q ss_pred eEEEecCCCC
Q 003969 232 LKVANVVPRS 241 (783)
Q Consensus 232 L~V~~A~pr~ 241 (783)
|+|..|.+++
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998775
No 78
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.43 E-value=5.5e-13 Score=120.06 Aligned_cols=80 Identities=18% Similarity=0.235 Sum_probs=71.6
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCcc---CCceeE
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISI---GNKTLK 233 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~---~Gr~L~ 233 (783)
.....+|||+|||+.+++++|+++|+++| |..++++. ++++|||||+|.+.++|++||+.|||..+ .|+.|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 45567899999999999999999999995 77777766 56789999999999999999999999998 899999
Q ss_pred EEecCCCC
Q 003969 234 VANVVPRS 241 (783)
Q Consensus 234 V~~A~pr~ 241 (783)
|..|.++.
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99997654
No 79
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=3.6e-13 Score=120.82 Aligned_cols=79 Identities=16% Similarity=0.238 Sum_probs=70.8
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
.....+|||+|||+.+++++|+++|+++| |..+.+++ ++++|||||+|.+.++|++||+.|||..+.|+.|+|..
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 44567899999999999999999999995 66677665 56789999999999999999999999999999999999
Q ss_pred cCCC
Q 003969 237 VVPR 240 (783)
Q Consensus 237 A~pr 240 (783)
|+++
T Consensus 90 a~~~ 93 (103)
T 2dnm_A 90 ARYG 93 (103)
T ss_dssp CSSC
T ss_pred CCcC
Confidence 9765
No 80
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.43 E-value=3.9e-13 Score=120.17 Aligned_cols=74 Identities=18% Similarity=0.182 Sum_probs=67.9
Q ss_pred cEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCC
Q 003969 167 SKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRS 241 (783)
Q Consensus 167 ~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr~ 241 (783)
+|||+|||+.+++++|+++|+++| |....+... ++|||||+|.+.++|++||+.|||..++|+.|+|..|++++
T Consensus 2 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 2 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp EEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 699999999999999999999995 666666555 78999999999999999999999999999999999998765
No 81
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=3.5e-13 Score=120.56 Aligned_cols=78 Identities=19% Similarity=0.209 Sum_probs=67.8
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhccceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
..+..+|||+|||+.+++++|+++|+.+. .+.+++ ++++|||||+|.+.++|++||+.|||..++|+.|+|..|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~--~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV--RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS--EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe--EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 44567899999999999999999999873 333333 567899999999999999999999999999999999999
Q ss_pred CCCC
Q 003969 238 VPRS 241 (783)
Q Consensus 238 ~pr~ 241 (783)
+++.
T Consensus 90 ~~~~ 93 (102)
T 2fc8_A 90 KPKG 93 (102)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8764
No 82
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.43 E-value=2.5e-13 Score=120.25 Aligned_cols=80 Identities=23% Similarity=0.291 Sum_probs=70.9
Q ss_pred CccccEEEeCCCcccCHHHHH----HHhhhcc-ceeeEeec-cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 163 DVELSKCLVHLPRKWHSDNLK----KFLADHG-ILYKSAKK-KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~~~~~Lk----klf~~~~-v~~~~i~~-~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
.+..+|||+|||+.+++++|+ ++|+++| |....+.. ++++|||||+|.+.++|++|++.|||..+.|+.|+|..
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 85 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456789999999999999999 9999996 66666554 57789999999999999999999999999999999999
Q ss_pred cCCCCc
Q 003969 237 VVPRSF 242 (783)
Q Consensus 237 A~pr~~ 242 (783)
|+++..
T Consensus 86 a~~~~~ 91 (97)
T 1nu4_A 86 AKTDSD 91 (97)
T ss_dssp CSSCCT
T ss_pred ccCCCc
Confidence 987654
No 83
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=4.9e-13 Score=122.19 Aligned_cols=80 Identities=14% Similarity=0.103 Sum_probs=70.9
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-c----eeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-I----LYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v----~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
..+..+|||+|||+.+++++|+++|+++| | ...++..++++|||||+|.+.++|++||+.|||..++|+.|+|..
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34567899999999999999999999995 4 345555688999999999999999999999999999999999999
Q ss_pred cCCCC
Q 003969 237 VVPRS 241 (783)
Q Consensus 237 A~pr~ 241 (783)
|+++.
T Consensus 102 a~~~~ 106 (115)
T 2cpx_A 102 GKNKK 106 (115)
T ss_dssp CCCCS
T ss_pred ccCCC
Confidence 98764
No 84
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=2.6e-13 Score=121.66 Aligned_cols=78 Identities=19% Similarity=0.290 Sum_probs=70.2
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~p 239 (783)
..+|||+|||+.+++++|+++|+++| |...++.. ++++|||||+|.+.++|++||+.|||..|+|+.|+|..|.+
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 45799999999999999999999995 77777764 46689999999999999999999999999999999999987
Q ss_pred CCc
Q 003969 240 RSF 242 (783)
Q Consensus 240 r~~ 242 (783)
+..
T Consensus 88 ~~~ 90 (104)
T 1p1t_A 88 EKN 90 (104)
T ss_dssp TTH
T ss_pred ccc
Confidence 654
No 85
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=6.3e-13 Score=118.04 Aligned_cols=78 Identities=15% Similarity=0.235 Sum_probs=68.9
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccC--CceeEEEecC
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIG--NKTLKVANVV 238 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~--Gr~L~V~~A~ 238 (783)
..+..+|||+|||+.+++++|+++|+++| |..+.+.++ +|||||+|.+.++|++||+.|||..+. |+.|+|..|+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 44567899999999999999999999996 655555443 899999999999999999999999999 9999999998
Q ss_pred CCC
Q 003969 239 PRS 241 (783)
Q Consensus 239 pr~ 241 (783)
+++
T Consensus 92 ~~~ 94 (97)
T 1why_A 92 SGP 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 86
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=2.6e-13 Score=120.43 Aligned_cols=79 Identities=19% Similarity=0.143 Sum_probs=68.0
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
.....+|||+|||+.+++++|+++|.++| |....+++ ++++|||||+|.+.++|++||+.|||..|.|+.|+|..
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34457899999999999999999999996 43333333 56789999999999999999999999999999999998
Q ss_pred cCCC
Q 003969 237 VVPR 240 (783)
Q Consensus 237 A~pr 240 (783)
|.++
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8654
No 87
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=2.2e-13 Score=123.15 Aligned_cols=78 Identities=9% Similarity=0.077 Sum_probs=69.2
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhccceeeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~v~~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
.....+|||+|||+.+++++|+++|+++++..+++++ ++++|||||+|.++++|++||+ +||..++||.|+|..+.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCSEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCceEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 4456789999999999999999999999876777665 5778999999999999999995 79999999999999886
Q ss_pred CC
Q 003969 239 PR 240 (783)
Q Consensus 239 pr 240 (783)
+.
T Consensus 91 ~~ 92 (102)
T 1wez_A 91 TA 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 88
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.42 E-value=3.2e-13 Score=122.18 Aligned_cols=78 Identities=15% Similarity=0.225 Sum_probs=68.7
Q ss_pred CccccEEEeCCCccc------CHHHHHHHhhhcc-ceeeEeec--cCCccEEEEEeCCHHHHHHHHHHHcCCccCCc-ee
Q 003969 163 DVELSKCLVHLPRKW------HSDNLKKFLADHG-ILYKSAKK--KKGMTVGFVKFESVEQLKNAVEELEGISIGNK-TL 232 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~------~~~~Lkklf~~~~-v~~~~i~~--~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr-~L 232 (783)
..+.+|||+|||+.+ ++++|+++|+++| |..+.+.+ ++++|||||+|.+.++|++||+.|||..|.|+ .|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 335689999999999 6799999999996 66666664 67899999999999999999999999999999 99
Q ss_pred EEEecCCC
Q 003969 233 KVANVVPR 240 (783)
Q Consensus 233 ~V~~A~pr 240 (783)
+|..|...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99988543
No 89
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=4.1e-13 Score=121.96 Aligned_cols=77 Identities=23% Similarity=0.349 Sum_probs=69.3
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCC-----ceeEEE
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN-----KTLKVA 235 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~G-----r~L~V~ 235 (783)
.....+|||+|||+.+++++|+++|.++| |..+++.+. |||||+|.+.++|++||+.|||+.+.| +.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 34468999999999999999999999995 766666554 999999999999999999999999999 999999
Q ss_pred ecCCCC
Q 003969 236 NVVPRS 241 (783)
Q Consensus 236 ~A~pr~ 241 (783)
.|+++.
T Consensus 89 ~a~~~~ 94 (108)
T 1x4c_A 89 VDGPRS 94 (108)
T ss_dssp ESSCCS
T ss_pred eCCCCC
Confidence 998864
No 90
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=99.42 E-value=7.5e-13 Score=146.99 Aligned_cols=97 Identities=12% Similarity=0.157 Sum_probs=83.4
Q ss_pred CCeEEEEC---------CCccccCCHHHHHHHHHHHhhhccC--CCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCC
Q 003969 567 SNLRFCIS---------PTAFFQVNTLAAEKLYSLGGDWADL--GPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMN 632 (783)
Q Consensus 567 ~gl~f~is---------p~sFfQvN~~~ae~L~~~i~~~l~~--~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s 632 (783)
+|.+|.++ ..+|||.+......++..++..... .++.+|||+|||+|.+++.+++.. .+|++||++
T Consensus 7 ~g~~~~v~~~~~~~~~~~~~Ffn~~~~~nR~l~~~~~~~~~~~~~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~ 86 (392)
T 3axs_A 7 GIAKIIVPEIPKTVSSDMPVFYNPRMRVNRDLAVLGLEYLCKKLGRPVKVADPLSASGIRAIRFLLETSCVEKAYANDIS 86 (392)
T ss_dssp TTEEEEECCCCSSCCTTCCSSCCGGGHHHHHHHHHHHHHHHHHHCSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSC
T ss_pred CCEEEEEecccccccCCCCEEEcCCcHHHHHHHHHHHHHHhhccCCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECC
Confidence 67888883 4689999988888887766655433 457899999999999999999852 689999999
Q ss_pred HHHHHHHHHHHHHcCCCc--EEEEEccHHHHHH
Q 003969 633 ASAVSDAHRNAEINGIKN--CRFVCAKAEDVMG 663 (783)
Q Consensus 633 ~~AIe~Ak~Na~~ngl~n--v~f~~gDaed~l~ 663 (783)
+.|++.|++|++.||+.+ ++++++|+.+++.
T Consensus 87 ~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~ 119 (392)
T 3axs_A 87 SKAIEIMKENFKLNNIPEDRYEIHGMEANFFLR 119 (392)
T ss_dssp HHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHH
Confidence 999999999999999976 9999999998765
No 91
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=7e-13 Score=116.13 Aligned_cols=76 Identities=17% Similarity=0.280 Sum_probs=67.9
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr 240 (783)
..+..+|||+|||+.+++++|+++|+++| |..+++. +|||||+|.+.++|++||+.|||..+.|+.|+|..|+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 80 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNK 80 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCC
Confidence 34556899999999999999999999995 6666655 689999999999999999999999999999999999776
Q ss_pred C
Q 003969 241 S 241 (783)
Q Consensus 241 ~ 241 (783)
.
T Consensus 81 ~ 81 (90)
T 2dnq_A 81 S 81 (90)
T ss_dssp C
T ss_pred C
Confidence 4
No 92
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=99.42 E-value=4e-13 Score=142.06 Aligned_cols=102 Identities=17% Similarity=0.203 Sum_probs=85.5
Q ss_pred cccccccceEE-eeCCeEEEECC--CccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCC-EEEEE
Q 003969 554 SNDVVEARIHD-SISNLRFCISP--TAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG-MVIGI 629 (783)
Q Consensus 554 ~~l~G~~~I~E-~i~gl~f~isp--~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~-~VigV 629 (783)
..++|.+.+.+ ..+|++|.+++ ..|||.++.....++.. ..++.+|||+|||+|.+++.+++.+. +|+||
T Consensus 81 ~~l~G~~~~~~~~e~g~~f~~d~~~~~f~~~~~~~~~~l~~~------~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~v 154 (278)
T 2frn_A 81 ELLYGSDTVTVHVENGIKYKLDVAKIMFSPANVKERVRMAKV------AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAI 154 (278)
T ss_dssp EEEECSCCEEEEEETTEEEEEETTTSCCCGGGHHHHHHHHHH------CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEE
T ss_pred EEEECCCCEEEEEECCEEEEEEccceeEcCCcHHHHHHHHHh------CCCCCEEEEecccCCHHHHHHHHhCCCEEEEE
Confidence 34567666554 57999999965 67899999887777654 23578999999999999999999875 69999
Q ss_pred eCCHHHHHHHHHHHHHcCCCc-EEEEEccHHHH
Q 003969 630 EMNASAVSDAHRNAEINGIKN-CRFVCAKAEDV 661 (783)
Q Consensus 630 E~s~~AIe~Ak~Na~~ngl~n-v~f~~gDaed~ 661 (783)
|+++.|++.|++|++.|++.+ ++|+++|+.++
T Consensus 155 D~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~ 187 (278)
T 2frn_A 155 EKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDF 187 (278)
T ss_dssp CCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTC
T ss_pred ECCHHHHHHHHHHHHHcCCCceEEEEECCHHHh
Confidence 999999999999999999976 99999998653
No 93
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.42 E-value=4.4e-13 Score=126.27 Aligned_cols=79 Identities=20% Similarity=0.306 Sum_probs=71.1
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
..+..+|||+|||+.+++++|+++|+++| |..+++.+ ++++|||||+|.+.++|++||+.|||..++|++|+|..
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44567899999999999999999999996 77777765 57889999999999999999999999999999999998
Q ss_pred cCCC
Q 003969 237 VVPR 240 (783)
Q Consensus 237 A~pr 240 (783)
|.++
T Consensus 123 a~~~ 126 (129)
T 2kxn_B 123 SITK 126 (129)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 8765
No 94
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=5.5e-13 Score=120.43 Aligned_cols=80 Identities=16% Similarity=0.208 Sum_probs=69.0
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhccce-e-eEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGIL-Y-KSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~v~-~-~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
.....+|||+|||+.+++++|+++|.++|.. . +.+.+ ++++|||||+|.++++|++||+. ||..++||.|+|..
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 4456789999999999999999999999743 2 44443 67899999999999999999998 99999999999998
Q ss_pred cCCCCc
Q 003969 237 VVPRSF 242 (783)
Q Consensus 237 A~pr~~ 242 (783)
+.++..
T Consensus 91 ~~~~~~ 96 (104)
T 1wg5_A 91 SSRAEV 96 (104)
T ss_dssp ECTTTS
T ss_pred CCHHHH
Confidence 876543
No 95
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1e-12 Score=117.11 Aligned_cols=76 Identities=17% Similarity=0.172 Sum_probs=66.1
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhc--c-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADH--G-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~--~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
..+..+|||+|||+.+++++|+++|+++ + |..++ ..+|||||+|.+.++|++||+.|||..++|+.|+|..|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVK----KIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEE----ECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEE----EeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 4456689999999999999999999999 4 33222 346899999999999999999999999999999999998
Q ss_pred CCC
Q 003969 239 PRS 241 (783)
Q Consensus 239 pr~ 241 (783)
++.
T Consensus 88 ~~~ 90 (99)
T 2cpd_A 88 PVD 90 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 96
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.41 E-value=1.8e-13 Score=128.73 Aligned_cols=78 Identities=15% Similarity=0.185 Sum_probs=69.0
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-cee--eEeec----cCCccEEEEEeCCHHHHHHHHHHHcCC----ccCCc
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILY--KSAKK----KKGMTVGFVKFESVEQLKNAVEELEGI----SIGNK 230 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~--~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~----~~~Gr 230 (783)
....-+|||+|||+.+++++|+++|++|| |.. +++++ ++++|||||+|.+. +|.+||+.|||. .++||
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 34456899999999999999999999995 655 56665 57899999999999 999999999999 99999
Q ss_pred eeEEEecCCC
Q 003969 231 TLKVANVVPR 240 (783)
Q Consensus 231 ~L~V~~A~pr 240 (783)
.|+|..|+++
T Consensus 99 ~l~V~~a~~~ 108 (131)
T 2m2b_A 99 TINVEFAKGS 108 (131)
T ss_dssp CCCCEECCCS
T ss_pred EEEEEECCCC
Confidence 9999999775
No 97
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.41 E-value=1.3e-13 Score=118.66 Aligned_cols=70 Identities=17% Similarity=0.255 Sum_probs=62.4
Q ss_pred ccEEEeCCCccc------CHHHHHHHhhhcc-ceeeEeec--cCCccEEEEEeCCHHHHHHHHHHHcCCccCCc-eeEEE
Q 003969 166 LSKCLVHLPRKW------HSDNLKKFLADHG-ILYKSAKK--KKGMTVGFVKFESVEQLKNAVEELEGISIGNK-TLKVA 235 (783)
Q Consensus 166 ~~i~V~nLp~~~------~~~~Lkklf~~~~-v~~~~i~~--~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr-~L~V~ 235 (783)
.+|||+|||+.+ ++++|+++|+++| |....+.+ ++++|||||+|.+.++|++||+.|||..+.|| +|+|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V~ 81 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVN 81 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEeC
Confidence 469999999999 6799999999996 66666654 67899999999999999999999999999999 99874
No 98
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=7e-13 Score=120.00 Aligned_cols=79 Identities=11% Similarity=0.104 Sum_probs=67.9
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHc--CCccCCceeEEEecC
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELE--GISIGNKTLKVANVV 238 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~Ln--G~~~~Gr~L~V~~A~ 238 (783)
..+.-.|||+|||+.+++++|+++|++|| |..+.+++ .+|||||+|.+.++|++||+.|| |..+.||.|+|..|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK--GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 34556899999999999999999999996 65555544 48999999999999999999885 678999999999998
Q ss_pred CCCc
Q 003969 239 PRSF 242 (783)
Q Consensus 239 pr~~ 242 (783)
++..
T Consensus 90 ~~~~ 93 (101)
T 2cq1_A 90 HKEL 93 (101)
T ss_dssp CSSC
T ss_pred cccC
Confidence 7654
No 99
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.41 E-value=4e-13 Score=116.87 Aligned_cols=75 Identities=11% Similarity=0.146 Sum_probs=67.4
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~p 239 (783)
..+|||+|||+.+++++|+++|+++| |....+.. ++++|||||+|.+.++|++|+ .|||..++|+.|+|..|++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 45799999999999999999999995 66676664 567899999999999999999 9999999999999998865
Q ss_pred C
Q 003969 240 R 240 (783)
Q Consensus 240 r 240 (783)
+
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 100
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.5e-13 Score=126.20 Aligned_cols=79 Identities=10% Similarity=0.158 Sum_probs=70.1
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhccce--eeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGIL--YKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~v~--~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
.....+|||+|||+.+++++|+++|+++|.. .+++++ ++++|||||+|.+.++|++||+. ||..++||.|+|..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 4556789999999999999999999999754 366665 67899999999999999999998 99999999999999
Q ss_pred cCCCC
Q 003969 237 VVPRS 241 (783)
Q Consensus 237 A~pr~ 241 (783)
|.++.
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 97664
No 101
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.41 E-value=3.5e-13 Score=123.29 Aligned_cols=79 Identities=22% Similarity=0.315 Sum_probs=70.9
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec-cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 003969 163 DVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK-KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~-~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr 240 (783)
.+...|||+|||+.+++++|+++|+++| |..+.+.+ ++++|||||+|.+.++|++||+.|||..+.|+.|+|..|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNAN 85 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 3456899999999999999999999996 77777666 677999999999999999999999999999999999998765
Q ss_pred C
Q 003969 241 S 241 (783)
Q Consensus 241 ~ 241 (783)
.
T Consensus 86 ~ 86 (115)
T 3lqv_A 86 R 86 (115)
T ss_dssp H
T ss_pred h
Confidence 3
No 102
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.41 E-value=8.2e-13 Score=124.85 Aligned_cols=80 Identities=28% Similarity=0.321 Sum_probs=71.2
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
.....+|||+|||+.+++++|+++|+++| |..+++++ ++++|||||+|.+.++|++||+.|||..+.|+.|+|..
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34456899999999999999999999995 77777765 45689999999999999999999999999999999999
Q ss_pred cCCCC
Q 003969 237 VVPRS 241 (783)
Q Consensus 237 A~pr~ 241 (783)
|.++.
T Consensus 119 a~~~~ 123 (139)
T 1u6f_A 119 AASGH 123 (139)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 98764
No 103
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=4.2e-13 Score=121.69 Aligned_cols=76 Identities=25% Similarity=0.274 Sum_probs=68.2
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 003969 163 DVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
...-+|||+|||+.+++++|+++|+++| |..+.+.+ ++++|||||+|.++++|++||+ +||..++|+.|.|..+.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 3456799999999999999999999996 77777776 6789999999999999999999 99999999999998765
Q ss_pred C
Q 003969 239 P 239 (783)
Q Consensus 239 p 239 (783)
+
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 104
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=7.7e-13 Score=120.10 Aligned_cols=78 Identities=13% Similarity=0.129 Sum_probs=69.2
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCC
Q 003969 163 DVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRS 241 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr~ 241 (783)
....+|||+|||+.+++++|+++|++|| |..+++... +|||||+|.+.++|++||+.|||..|.|+.|+|..|++++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCC
Confidence 4456899999999999999999999996 655555444 8999999999999999999999999999999999998765
Q ss_pred c
Q 003969 242 F 242 (783)
Q Consensus 242 ~ 242 (783)
.
T Consensus 101 ~ 101 (109)
T 1x4g_A 101 D 101 (109)
T ss_dssp S
T ss_pred C
Confidence 4
No 105
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.41 E-value=1.3e-12 Score=117.47 Aligned_cols=79 Identities=14% Similarity=0.226 Sum_probs=68.8
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr 240 (783)
..+..+|||+|||+.+++++|+++|++|| |..+.+. +|||||+|.+.++|++||+.|||..+.|+.|+|..|+++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 34456899999999999999999999996 6555544 579999999999999999999999999999999999887
Q ss_pred Cccc
Q 003969 241 SFDK 244 (783)
Q Consensus 241 ~~~k 244 (783)
...+
T Consensus 84 ~~~~ 87 (103)
T 2dgu_A 84 DQKR 87 (103)
T ss_dssp CCCC
T ss_pred cccc
Confidence 5443
No 106
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.40 E-value=4.5e-13 Score=122.24 Aligned_cols=81 Identities=15% Similarity=0.242 Sum_probs=69.2
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
...+.+|||+|||+.+++++|+++|++|| |..++++. ++++|||||+|.+.++|++||+.+ |..+.|+.|+|..
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 44567899999999999999999999996 77777765 567899999999999999999987 5999999999999
Q ss_pred cCCCCcc
Q 003969 237 VVPRSFD 243 (783)
Q Consensus 237 A~pr~~~ 243 (783)
|.++...
T Consensus 101 a~~~~~~ 107 (109)
T 2rs2_A 101 AFPRRAQ 107 (109)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9887643
No 107
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.40 E-value=1.7e-13 Score=124.39 Aligned_cols=79 Identities=15% Similarity=0.143 Sum_probs=70.1
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc----ceeeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEE
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG----ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKV 234 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~----v~~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V 234 (783)
.....+|||+|||+.+++++|+++|+++| |..+++.+ ++++|||||+|.+.++|++||+ |||..++||.|+|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 45678899999999999999999999985 46666665 6789999999999999999999 9999999999999
Q ss_pred EecCCCC
Q 003969 235 ANVVPRS 241 (783)
Q Consensus 235 ~~A~pr~ 241 (783)
..|.++.
T Consensus 87 ~~a~~~~ 93 (107)
T 2lmi_A 87 YEINNED 93 (107)
T ss_dssp EECCHHH
T ss_pred EECCHHH
Confidence 9887654
No 108
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.5e-12 Score=118.65 Aligned_cols=79 Identities=16% Similarity=0.176 Sum_probs=70.1
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
..+..+|||+|||+.+++++|+++|.++| |..+++.. ++++|||||+|.+.++|++||+.|||..+.|+.|+|..|
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 44567899999999999999999999995 66666665 456899999999999999999999999999999999988
Q ss_pred CCC
Q 003969 238 VPR 240 (783)
Q Consensus 238 ~pr 240 (783)
.+.
T Consensus 92 ~~~ 94 (114)
T 2do0_A 92 ERA 94 (114)
T ss_dssp SCC
T ss_pred ccC
Confidence 653
No 109
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.40 E-value=3.5e-13 Score=118.82 Aligned_cols=76 Identities=20% Similarity=0.183 Sum_probs=65.4
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 163 DVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
....+|||+|||+.+++++|+++|+++| |....++. ++++|||||+|.++++|++||+.|||..++||.|+|..+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 3457899999999999999999999996 44344443 567899999999999999999999999999999999876
Q ss_pred C
Q 003969 238 V 238 (783)
Q Consensus 238 ~ 238 (783)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 4
No 110
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.40 E-value=6.2e-13 Score=117.20 Aligned_cols=77 Identities=19% Similarity=0.304 Sum_probs=68.6
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
.....+|||+|||+.+++++|+++|+++| |..+++.. ++++|||||+|.+.++|++||+.|||..+.|+.|+|..|
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 34567899999999999999999999995 66677665 466899999999999999999999999999999999877
Q ss_pred C
Q 003969 238 V 238 (783)
Q Consensus 238 ~ 238 (783)
+
T Consensus 93 ~ 93 (95)
T 2ywk_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 111
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.40 E-value=1.9e-13 Score=130.40 Aligned_cols=79 Identities=18% Similarity=0.188 Sum_probs=69.9
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc----ceeeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEE
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG----ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKV 234 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~----v~~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V 234 (783)
.....+|||+|||+.+++++|+++|+++| |..+++.+ ++++|||||+|.+.++|++||+ |||..++||.|+|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 34567899999999999999999999996 45667665 6788999999999999999999 9999999999999
Q ss_pred EecCCCC
Q 003969 235 ANVVPRS 241 (783)
Q Consensus 235 ~~A~pr~ 241 (783)
..|.++.
T Consensus 120 ~~a~~~e 126 (136)
T 2hgl_A 120 FKSHRTE 126 (136)
T ss_dssp EECCHHH
T ss_pred EECChHH
Confidence 9886553
No 112
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.40 E-value=4.9e-13 Score=127.25 Aligned_cols=79 Identities=11% Similarity=0.092 Sum_probs=68.8
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-cee--------eEee-ccCCccEEEEEeCCHHHHHHHHHHHcCCccCCce
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILY--------KSAK-KKKGMTVGFVKFESVEQLKNAVEELEGISIGNKT 231 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~--------~~i~-~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~ 231 (783)
..+..+|||+|||+.+++++|+++|++|| |.. .++. .++++|||||+|.+.++|++||+.|||+.+.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 34567899999999999999999999996 433 2222 3789999999999999999999999999999999
Q ss_pred eEEEecCCC
Q 003969 232 LKVANVVPR 240 (783)
Q Consensus 232 L~V~~A~pr 240 (783)
|+|..|+++
T Consensus 122 l~V~~a~~~ 130 (143)
T 3egn_A 122 MVVQFARSA 130 (143)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999999765
No 113
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.40 E-value=9.7e-13 Score=117.27 Aligned_cols=78 Identities=18% Similarity=0.231 Sum_probs=68.8
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr 240 (783)
..+..+|||+|||+.+++++|+++|+++| |...++. +++|||||+|.+.++|++||+.|||..++|+.|+|..|+++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH--KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE--TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEe--cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 44456899999999999999999999996 6555544 56899999999999999999999999999999999999775
Q ss_pred C
Q 003969 241 S 241 (783)
Q Consensus 241 ~ 241 (783)
.
T Consensus 90 ~ 90 (99)
T 2cpj_A 90 A 90 (99)
T ss_dssp S
T ss_pred C
Confidence 4
No 114
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.40 E-value=1.3e-12 Score=121.29 Aligned_cols=80 Identities=11% Similarity=0.238 Sum_probs=71.8
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
...+.+|||+|||+.+++++|+++|+++| |..+++.. ++++|||||+|.+.++|++||+.|||..++|+.|+|..|
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 45567899999999999999999999995 77777765 568899999999999999999999999999999999999
Q ss_pred CCCC
Q 003969 238 VPRS 241 (783)
Q Consensus 238 ~pr~ 241 (783)
.+..
T Consensus 112 ~~~~ 115 (124)
T 2kt5_A 112 ASQI 115 (124)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 7653
No 115
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=8.9e-13 Score=116.01 Aligned_cols=76 Identities=17% Similarity=0.241 Sum_probs=66.5
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhcc--ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcC-CccCCceeEEEecCC
Q 003969 163 DVELSKCLVHLPRKWHSDNLKKFLADHG--ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEG-ISIGNKTLKVANVVP 239 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~~~~~Lkklf~~~~--v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG-~~~~Gr~L~V~~A~p 239 (783)
....+|||+|||+.+++++|+++|+++| |....+ +++|||||+|.+.++|++||+.||| ..++|+.|+|..|++
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL---LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE---EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE---cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 3456899999999999999999999996 333333 4579999999999999999999999 999999999999987
Q ss_pred CC
Q 003969 240 RS 241 (783)
Q Consensus 240 r~ 241 (783)
+.
T Consensus 83 ~~ 84 (93)
T 2cqh_A 83 KK 84 (93)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 116
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=1.3e-12 Score=114.80 Aligned_cols=76 Identities=14% Similarity=0.206 Sum_probs=67.6
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr 240 (783)
.....+|||+|||+.+++++|+++|+++| |..+.+. ++||||+|.+.++|++||+.|||..++|+.|+|..|+++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 82 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 82 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCC
Confidence 44567899999999999999999999996 6666654 459999999999999999999999999999999999876
Q ss_pred C
Q 003969 241 S 241 (783)
Q Consensus 241 ~ 241 (783)
.
T Consensus 83 ~ 83 (92)
T 2dgt_A 83 L 83 (92)
T ss_dssp C
T ss_pred C
Confidence 4
No 117
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.39 E-value=4.9e-13 Score=122.86 Aligned_cols=77 Identities=21% Similarity=0.371 Sum_probs=68.2
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
.....+|||+|||+.+++++|+++|++|| |...++++ ++++|||||+|.+.++|++||+.|||..++|+.|+|..
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34457899999999999999999999996 77777764 56789999999999999999999999999999999987
Q ss_pred cC
Q 003969 237 VV 238 (783)
Q Consensus 237 A~ 238 (783)
|+
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 63
No 118
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.39 E-value=7.8e-13 Score=119.26 Aligned_cols=77 Identities=12% Similarity=0.235 Sum_probs=69.0
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
..+..+|||+|||+.+++++|+++|+++| |..+++.. ++++|||||+|.+.++|++||+.|||..+.|+.|+|..|
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 45567899999999999999999999995 66677665 567899999999999999999999999999999999876
Q ss_pred C
Q 003969 238 V 238 (783)
Q Consensus 238 ~ 238 (783)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 3
No 119
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.39 E-value=2.7e-13 Score=125.58 Aligned_cols=78 Identities=19% Similarity=0.215 Sum_probs=69.3
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhcc----ceeeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEE
Q 003969 163 DVELSKCLVHLPRKWHSDNLKKFLADHG----ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~~~~~Lkklf~~~~----v~~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~ 235 (783)
....+|||+|||+.+++++|++||+++| |..+++.+ ++++|||||+|.+.++|++||+ |||..++||.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 4467899999999999999999999995 46677665 6778999999999999999999 99999999999999
Q ss_pred ecCCCC
Q 003969 236 NVVPRS 241 (783)
Q Consensus 236 ~A~pr~ 241 (783)
.|.++.
T Consensus 94 ~a~~~~ 99 (118)
T 2db1_A 94 KSHRTE 99 (118)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 886553
No 120
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=1.6e-12 Score=113.74 Aligned_cols=76 Identities=16% Similarity=0.238 Sum_probs=67.4
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr 240 (783)
.....+|||+|||+.+++++|+++|+++| |...+++ ++||||+|.+.++|++||+.|||..++|+.|+|..|+++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 44567899999999999999999999996 6655554 459999999999999999999999999999999999776
Q ss_pred C
Q 003969 241 S 241 (783)
Q Consensus 241 ~ 241 (783)
.
T Consensus 82 ~ 82 (90)
T 2dnp_A 82 Q 82 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 121
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=7.6e-13 Score=122.16 Aligned_cols=79 Identities=16% Similarity=0.159 Sum_probs=68.5
Q ss_pred CCccccEEEeCCCcc-cCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcC--CccCCceeEEEec
Q 003969 162 QDVELSKCLVHLPRK-WHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEG--ISIGNKTLKVANV 237 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~-~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG--~~~~Gr~L~V~~A 237 (783)
..++.+|||+|||+. +++++|+++|++|| |..+.+. +++|||||+|.+.++|++||+.||| ..+.||.|+|..|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~--~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a 99 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM--RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLS 99 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEC
Confidence 445678999999998 99999999999996 7766664 5689999999999999999999975 5699999999999
Q ss_pred CCCCc
Q 003969 238 VPRSF 242 (783)
Q Consensus 238 ~pr~~ 242 (783)
+++..
T Consensus 100 ~~~~~ 104 (112)
T 1x4f_A 100 EKYKK 104 (112)
T ss_dssp CSCSS
T ss_pred ccccc
Confidence 76543
No 122
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=1.6e-12 Score=118.25 Aligned_cols=79 Identities=16% Similarity=0.150 Sum_probs=67.6
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCc--cCCceeEEEecC
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGIS--IGNKTLKVANVV 238 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~--~~Gr~L~V~~A~ 238 (783)
..+.-.|||+|||+.+++++|+++|++|| |..+.+++ .||||||+|.+.++|++||+.|||.. ++||.|+|..|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP--FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 34456799999999999999999999996 65555543 58999999999999999999998754 999999999997
Q ss_pred CCCc
Q 003969 239 PRSF 242 (783)
Q Consensus 239 pr~~ 242 (783)
++..
T Consensus 90 ~~~~ 93 (104)
T 1wex_A 90 SKRI 93 (104)
T ss_dssp SSSC
T ss_pred Cccc
Confidence 7643
No 123
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1.2e-12 Score=120.05 Aligned_cols=80 Identities=16% Similarity=0.145 Sum_probs=70.8
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
.....+|||+|||+.+++++|+++|+++| |..+++.+ ++++|||||+|.+.++|++||+.||| .|.|+.|+|..
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 44567899999999999999999999995 77777765 46789999999999999999999999 89999999999
Q ss_pred cCCCCc
Q 003969 237 VVPRSF 242 (783)
Q Consensus 237 A~pr~~ 242 (783)
|.++..
T Consensus 93 a~~~~~ 98 (116)
T 2cqd_A 93 AYLGAK 98 (116)
T ss_dssp STTTCC
T ss_pred cccCCC
Confidence 976543
No 124
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=99.38 E-value=2.2e-12 Score=137.17 Aligned_cols=96 Identities=21% Similarity=0.266 Sum_probs=84.8
Q ss_pred EeeCCeEEEECCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh-CCEEEEEeCCHHHHHHHHHH
Q 003969 564 DSISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRN 642 (783)
Q Consensus 564 E~i~gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~-~~~VigVE~s~~AIe~Ak~N 642 (783)
..++++.|.++++.|. ++..++.|+..+++++...++.+|||+|||+|.+++.|++. ..+|+|||+++.|++.|++|
T Consensus 88 ~~f~~~~~~v~~~~li--pr~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n 165 (284)
T 1nv8_A 88 KEFMGLSFLVEEGVFV--PRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKN 165 (284)
T ss_dssp EEETTEEEECCTTSCC--CCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHH
T ss_pred eEECCeEEEeCCCcee--cChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Confidence 3578999999999994 66778888888888775556679999999999999999998 67999999999999999999
Q ss_pred HHHcCCCc-EEEEEccHHHH
Q 003969 643 AEINGIKN-CRFVCAKAEDV 661 (783)
Q Consensus 643 a~~ngl~n-v~f~~gDaed~ 661 (783)
+..+++.+ ++|+++|+.+.
T Consensus 166 ~~~~~l~~~v~~~~~D~~~~ 185 (284)
T 1nv8_A 166 AERHGVSDRFFVRKGEFLEP 185 (284)
T ss_dssp HHHTTCTTSEEEEESSTTGG
T ss_pred HHHcCCCCceEEEECcchhh
Confidence 99999975 99999998764
No 125
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.38 E-value=1e-12 Score=119.85 Aligned_cols=76 Identities=21% Similarity=0.275 Sum_probs=68.4
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr 240 (783)
.....+|||+|||+.+++++|+++|+++| |..+.+. +|||||+|.+.++|++|++.|||..++|+.|+|..|+++
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 34557899999999999999999999996 6666665 799999999999999999999999999999999999775
Q ss_pred C
Q 003969 241 S 241 (783)
Q Consensus 241 ~ 241 (783)
+
T Consensus 104 ~ 104 (108)
T 2jvo_A 104 A 104 (108)
T ss_dssp C
T ss_pred C
Confidence 4
No 126
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=8e-13 Score=117.51 Aligned_cols=79 Identities=13% Similarity=0.169 Sum_probs=70.1
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ce-eeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCce----
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-IL-YKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKT---- 231 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~-~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~---- 231 (783)
....-+|||+|||+.+++++|+++|+++| |. .+++.+ ++++|||||+|.+.++|++||+.|||..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34566899999999999999999999996 66 777765 467899999999999999999999999999999
Q ss_pred eEEEecCCC
Q 003969 232 LKVANVVPR 240 (783)
Q Consensus 232 L~V~~A~pr 240 (783)
|+|..|++.
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999988764
No 127
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=99.38 E-value=1.1e-12 Score=131.78 Aligned_cols=93 Identities=17% Similarity=0.212 Sum_probs=67.5
Q ss_pred CCeEEEECCCccccCCHHHHHHHHHHHhhhccCC-CCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHH
Q 003969 567 SNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG-PDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAE 644 (783)
Q Consensus 567 ~gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~-~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~ 644 (783)
.|..|...++..+ +...+.++..+.+++... ++.+|||+|||+|.+++.++... .+|+|||+++.|++.|++|++
T Consensus 22 ~g~~l~~~~~~~~---rp~~~~~~~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~ 98 (202)
T 2fpo_A 22 RGRKLPVPDSPGL---RPTTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLA 98 (202)
T ss_dssp TTCEEECCCC---------CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHH
T ss_pred cCcEecCCCCCCC---CCCHHHHHHHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHH
Confidence 3556665543322 222233344444443321 56899999999999999877665 699999999999999999999
Q ss_pred HcCCCcEEEEEccHHHHH
Q 003969 645 INGIKNCRFVCAKAEDVM 662 (783)
Q Consensus 645 ~ngl~nv~f~~gDaed~l 662 (783)
.+++.+++|+++|+.+++
T Consensus 99 ~~~~~~v~~~~~D~~~~~ 116 (202)
T 2fpo_A 99 TLKAGNARVVNSNAMSFL 116 (202)
T ss_dssp HTTCCSEEEECSCHHHHH
T ss_pred HcCCCcEEEEECCHHHHH
Confidence 999989999999998754
No 128
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.38 E-value=2.4e-13 Score=128.04 Aligned_cols=78 Identities=19% Similarity=0.181 Sum_probs=68.6
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhccce--eeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGIL--YKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~v~--~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
.....+|||+|||+.+++++|+++|++++|. .+++++ ++++|||||+|.++++|++||+. +|..++||.|+|..
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFK 117 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTSCEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEE
Confidence 3446789999999999999999999999877 666665 67899999999999999999995 78999999999988
Q ss_pred cCCC
Q 003969 237 VVPR 240 (783)
Q Consensus 237 A~pr 240 (783)
+.++
T Consensus 118 a~~~ 121 (126)
T 2hgm_A 118 SSQE 121 (126)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8654
No 129
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.38 E-value=8.3e-13 Score=117.30 Aligned_cols=77 Identities=17% Similarity=0.212 Sum_probs=67.4
Q ss_pred CCccccEEEeCCCc-ccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 003969 162 QDVELSKCLVHLPR-KWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (783)
Q Consensus 162 ~~~~~~i~V~nLp~-~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~p 239 (783)
..+..+|||+|||+ .+++++|+++|++|| |....+. +|||||+|.+.++|++||+.|||..+.|+.|+|..|++
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 34567899999998 999999999999996 6666653 78999999999999999999999999999999999876
Q ss_pred CCc
Q 003969 240 RSF 242 (783)
Q Consensus 240 r~~ 242 (783)
+..
T Consensus 83 ~~~ 85 (96)
T 2kvi_A 83 NAR 85 (96)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 130
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.38 E-value=1.4e-12 Score=125.72 Aligned_cols=78 Identities=17% Similarity=0.260 Sum_probs=70.7
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 163 DVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
....+|||+|||+.+++++|+++|++|| |..+++.. ++++|||||+|.+.++|++||+.|||..+.|+.|+|..|
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4467899999999999999999999996 66777665 578999999999999999999999999999999999999
Q ss_pred CCC
Q 003969 238 VPR 240 (783)
Q Consensus 238 ~pr 240 (783)
.++
T Consensus 148 ~~~ 150 (158)
T 2kn4_A 148 RYG 150 (158)
T ss_dssp CCS
T ss_pred CCC
Confidence 765
No 131
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.37 E-value=2.1e-13 Score=119.14 Aligned_cols=74 Identities=19% Similarity=0.345 Sum_probs=64.9
Q ss_pred cEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCC
Q 003969 167 SKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRS 241 (783)
Q Consensus 167 ~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr~ 241 (783)
+|||+|||+.+++++|+++|+++| |....+.. ++++|||||+|.+.+ |++|++.|||..++|+.|+|..|.++.
T Consensus 3 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~ 81 (90)
T 2ki2_A 3 NIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKK 81 (90)
T ss_dssp EEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC----
T ss_pred EEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 599999999999999999999995 77777765 567899999999999 999999999999999999999997654
No 132
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.37 E-value=1e-12 Score=113.78 Aligned_cols=73 Identities=16% Similarity=0.350 Sum_probs=63.5
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhc----cc------eeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCcee
Q 003969 163 DVELSKCLVHLPRKWHSDNLKKFLADH----GI------LYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTL 232 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~~~~~Lkklf~~~----~v------~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L 232 (783)
.+..+|||+|||+.+++++|+++|+++ |+ ....+...+++|||||+|.+.++|++|+ .|||..++|+.|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l 82 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 82 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEE
Confidence 456789999999999999999999999 63 3344444567899999999999999999 999999999999
Q ss_pred EEEe
Q 003969 233 KVAN 236 (783)
Q Consensus 233 ~V~~ 236 (783)
+|..
T Consensus 83 ~V~r 86 (87)
T 2hzc_A 83 KIRR 86 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9973
No 133
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.37 E-value=1.8e-12 Score=115.79 Aligned_cols=75 Identities=16% Similarity=0.252 Sum_probs=66.9
Q ss_pred CCccccEEEeCCCc-ccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 003969 162 QDVELSKCLVHLPR-KWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (783)
Q Consensus 162 ~~~~~~i~V~nLp~-~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~p 239 (783)
..+..+|||+|||+ .+++++|+++|+++| |...++ ++|||||+|.+.++|++||+.|||..+.|+.|+|..|++
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI----KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE----CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 44567899999998 999999999999996 655554 379999999999999999999999999999999998876
Q ss_pred C
Q 003969 240 R 240 (783)
Q Consensus 240 r 240 (783)
+
T Consensus 95 ~ 95 (97)
T 2xnq_A 95 N 95 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 134
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.4e-12 Score=117.99 Aligned_cols=79 Identities=16% Similarity=0.122 Sum_probs=70.0
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc--ceeeEee-c----cCCccEEEEEeCCHHHHHHHHHHHc--CCccCCceeEE
Q 003969 164 VELSKCLVHLPRKWHSDNLKKFLADHG--ILYKSAK-K----KKGMTVGFVKFESVEQLKNAVEELE--GISIGNKTLKV 234 (783)
Q Consensus 164 ~~~~i~V~nLp~~~~~~~Lkklf~~~~--v~~~~i~-~----~r~~gfgFVtF~s~Eea~kAIe~Ln--G~~~~Gr~L~V 234 (783)
+..+|||+|||+.+++++|+++|.++| |..+.+. . ++++|||||+|.+.++|++||+.|| +..+.|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 456899999999999999999999993 7777766 2 4789999999999999999999996 59999999999
Q ss_pred EecCCCCc
Q 003969 235 ANVVPRSF 242 (783)
Q Consensus 235 ~~A~pr~~ 242 (783)
..|.|+..
T Consensus 87 ~~a~~~~~ 94 (109)
T 2dis_A 87 DWAEPEID 94 (109)
T ss_dssp EESCSSCS
T ss_pred EEcCCCCC
Confidence 99987754
No 135
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.37 E-value=1.3e-12 Score=128.12 Aligned_cols=82 Identities=20% Similarity=0.176 Sum_probs=72.3
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCC--ceeEEEecC
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGN--KTLKVANVV 238 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~G--r~L~V~~A~ 238 (783)
...-++|||+|||+.+++++|+++|++|| |..+.+..++++|||||+|.+.++|++||+.|||..+.| ++|+|..|+
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 34456899999999999999999999996 777777667778999999999999999999999999965 999999999
Q ss_pred CCCcc
Q 003969 239 PRSFD 243 (783)
Q Consensus 239 pr~~~ 243 (783)
++...
T Consensus 123 ~~~l~ 127 (164)
T 1sjr_A 123 LTSLN 127 (164)
T ss_dssp SSSCC
T ss_pred CCccc
Confidence 87544
No 136
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1.4e-12 Score=115.21 Aligned_cols=78 Identities=22% Similarity=0.267 Sum_probs=69.5
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc-ceeeE-eeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCC
Q 003969 164 VELSKCLVHLPRKWHSDNLKKFLADHG-ILYKS-AKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRS 241 (783)
Q Consensus 164 ~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~-i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr~ 241 (783)
...+|||+|||+.+++++|+++|+++| |..++ +...+..|.|||+|.+.++|++||+.|||..++|+.|+|..|.|+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDEM 93 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCCC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCccc
Confidence 367899999999999999999999996 66663 5665566779999999999999999999999999999999998873
No 137
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=99.37 E-value=5.3e-12 Score=139.68 Aligned_cols=96 Identities=17% Similarity=0.187 Sum_probs=81.2
Q ss_pred eCCeEEEECC-------CccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHH
Q 003969 566 ISNLRFCISP-------TAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAV 636 (783)
Q Consensus 566 i~gl~f~isp-------~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AI 636 (783)
-++.+|.+.. ..||+.+......+...++... ++.+|||+|||+|.+++.+++.. .+|+++|+++.++
T Consensus 8 Eg~~~~~~p~~~~~~~~~~F~np~~~~nr~l~~~~l~~~---~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av 84 (378)
T 2dul_A 8 EGKAKILIPKAESIYDSPVFYNPRMALNRDIVVVLLNIL---NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAY 84 (378)
T ss_dssp ETTEEEEEC--------CCCCCGGGHHHHHHHHHHHHHH---CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHH
T ss_pred eCcEEEEecCccccCCCCceeCCchHHHHHHHHHHHHHc---CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHH
Confidence 3677888864 7999988877777766666654 57899999999999999999873 5899999999999
Q ss_pred HHHHHHHHHc---------------CCCcEEEEEccHHHHHHH
Q 003969 637 SDAHRNAEIN---------------GIKNCRFVCAKAEDVMGS 664 (783)
Q Consensus 637 e~Ak~Na~~n---------------gl~nv~f~~gDaed~l~~ 664 (783)
+.|++|++.| ++.+++++++|+.+++..
T Consensus 85 ~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~ 127 (378)
T 2dul_A 85 ELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 127 (378)
T ss_dssp HHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred HHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence 9999999999 888899999999987653
No 138
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=1.5e-12 Score=112.28 Aligned_cols=75 Identities=13% Similarity=0.166 Sum_probs=66.0
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHH-cCCccCCceeEEEecC
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEEL-EGISIGNKTLKVANVV 238 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~L-nG~~~~Gr~L~V~~A~ 238 (783)
.....+|||+|||+.+++++|+++|+++| |...++. +++|||||+|.+.++|++|++.| ||..++|+.|+|..|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~--~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVV--QRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEE--GGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEE--CCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 34456899999999999999999999996 6555554 35899999999999999999999 9999999999998763
No 139
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.37 E-value=1.1e-12 Score=113.97 Aligned_cols=75 Identities=11% Similarity=0.258 Sum_probs=65.9
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
..+..+|||+|||+.+++++|+++|+++| |...+++. ++++|||||+|.+.++|++||+. +|..+.|+.|+|..
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEEe
Confidence 45567899999999999999999999995 77777764 56789999999999999999965 88899999999986
Q ss_pred c
Q 003969 237 V 237 (783)
Q Consensus 237 A 237 (783)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 140
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.36 E-value=2.5e-13 Score=130.02 Aligned_cols=79 Identities=10% Similarity=0.086 Sum_probs=69.8
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhccceeeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~v~~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
.....+|||+|||+.+++++|+++|+++++..+++++ ++++|||||+|.++++|++|| .|||..++||.|+|..+.
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~Gi~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCCCSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 3456789999999999999999999999977777665 678999999999999999999 899999999999999887
Q ss_pred CCC
Q 003969 239 PRS 241 (783)
Q Consensus 239 pr~ 241 (783)
++.
T Consensus 122 ~~~ 124 (139)
T 2hgn_A 122 TTG 124 (139)
T ss_dssp CSC
T ss_pred CCC
Confidence 654
No 141
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=2.6e-13 Score=126.29 Aligned_cols=79 Identities=18% Similarity=0.250 Sum_probs=67.5
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 163 DVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
....+|||+|||+.+++++|+++|.++| |..+.++. ++++|||||+|.+.++|++||+ |||..+.||.|+|..|
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 3457899999999999999999999996 33322222 6789999999999999999999 9999999999999999
Q ss_pred CCCCc
Q 003969 238 VPRSF 242 (783)
Q Consensus 238 ~pr~~ 242 (783)
.++..
T Consensus 102 ~~~~~ 106 (124)
T 1wel_A 102 TKKGM 106 (124)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 76543
No 142
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.36 E-value=1.5e-12 Score=122.58 Aligned_cols=76 Identities=17% Similarity=0.182 Sum_probs=67.4
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
..+..+|||+|||+.+++++|+++|+++| |...++.+ ++++|||||+|.+.++|++||+.|||..++|+.|+|..
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 44567899999999999999999999995 66666654 56789999999999999999999999999999999976
Q ss_pred c
Q 003969 237 V 237 (783)
Q Consensus 237 A 237 (783)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 4
No 143
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=8.9e-13 Score=118.62 Aligned_cols=80 Identities=15% Similarity=0.247 Sum_probs=71.1
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
.....+|||+|||+.+++++|+++|+++| |..+++++ ++++|||||+|.+.++|++||+. ||..++|+.|+|..
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 44567899999999999999999999995 77777765 46789999999999999999999 99999999999999
Q ss_pred cCCCCc
Q 003969 237 VVPRSF 242 (783)
Q Consensus 237 A~pr~~ 242 (783)
|.++..
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 987754
No 144
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.36 E-value=2.1e-12 Score=123.88 Aligned_cols=79 Identities=16% Similarity=0.192 Sum_probs=69.8
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr 240 (783)
.....+|||+|||+.+++++|+++|++|| |..+++.+. ++|||||+|.+.++|++||+.|||..+.|+.|+|..|+|+
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 34456899999999999999999999996 666665544 7899999999999999999999999999999999999876
Q ss_pred C
Q 003969 241 S 241 (783)
Q Consensus 241 ~ 241 (783)
.
T Consensus 149 ~ 149 (150)
T 2i2y_A 149 K 149 (150)
T ss_dssp C
T ss_pred C
Confidence 3
No 145
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.36 E-value=1.5e-12 Score=119.28 Aligned_cols=77 Identities=13% Similarity=0.078 Sum_probs=67.7
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCCc
Q 003969 164 VELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRSF 242 (783)
Q Consensus 164 ~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr~~ 242 (783)
...+|||+|||+.+++++|+++|++|| |..+.+ .+++|||||+|.+.++|++||+.|||+.++|+.|+|..|....+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i--~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 86 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLL--PEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVF 86 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEC--CSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE--eCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCcc
Confidence 356899999999999999999999996 544443 45789999999999999999999999999999999999876544
No 146
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.5e-12 Score=120.56 Aligned_cols=80 Identities=18% Similarity=0.139 Sum_probs=68.4
Q ss_pred CccccEEE--eCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCcc-----CCceeEE
Q 003969 163 DVELSKCL--VHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISI-----GNKTLKV 234 (783)
Q Consensus 163 ~~~~~i~V--~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~-----~Gr~L~V 234 (783)
.+..+||| ||||+.+++++|+++|++|| |..+.+ ..++|||||+|.+.++|++||+.|||.++ .|+.|.|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i--~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v 100 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLM--PPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 100 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEEC--CTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEE--eCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEE
Confidence 44567999 77999999999999999997 444443 34689999999999999999999999998 7899999
Q ss_pred EecCCCCccc
Q 003969 235 ANVVPRSFDK 244 (783)
Q Consensus 235 ~~A~pr~~~k 244 (783)
..|+..+..+
T Consensus 101 ~~a~~~p~~~ 110 (114)
T 2cq2_A 101 NFVEKVQWSG 110 (114)
T ss_dssp EEESCCCCSS
T ss_pred EecccCcccC
Confidence 9998776544
No 147
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=4.1e-13 Score=122.80 Aligned_cols=75 Identities=13% Similarity=0.247 Sum_probs=68.1
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~p 239 (783)
..+|||+|||+.+++++|+++|+++| |..+.++. ++++|||||+|.+.++|++|| .|||..++|+.|+|..|++
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 45799999999999999999999995 77777765 567899999999999999999 9999999999999998866
Q ss_pred C
Q 003969 240 R 240 (783)
Q Consensus 240 r 240 (783)
+
T Consensus 104 ~ 104 (114)
T 2cq4_A 104 E 104 (114)
T ss_dssp H
T ss_pred C
Confidence 4
No 148
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=4.9e-13 Score=115.59 Aligned_cols=74 Identities=22% Similarity=0.217 Sum_probs=65.7
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 163 DVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
.++.+|||+|||+.+++++|+++|+++| |...++.. ++++|||||+|.+.++|++||+.|||..++|+.|+|..
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 3456899999999999999999999995 77777665 56789999999999999999999999999999998754
No 149
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.35 E-value=1.4e-12 Score=123.69 Aligned_cols=79 Identities=16% Similarity=0.256 Sum_probs=70.6
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 163 DVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
....+|||+|||+.+++++|+++|+++| |..++++. ++++|||||+|.+.++|++||+.|||..++|+.|+|..|
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 3356799999999999999999999995 76777664 577899999999999999999999999999999999999
Q ss_pred CCCC
Q 003969 238 VPRS 241 (783)
Q Consensus 238 ~pr~ 241 (783)
+++.
T Consensus 125 ~~~~ 128 (135)
T 2lea_A 125 RYGR 128 (135)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 150
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.35 E-value=8.1e-13 Score=111.78 Aligned_cols=70 Identities=14% Similarity=0.253 Sum_probs=64.1
Q ss_pred cEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 167 SKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 167 ~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
+|||+|||+.+++++|+++|+++| |....+.. ++++|||||+|.+.++|++|++.|| ..++|+.|+|..|
T Consensus 2 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 699999999999999999999995 76677665 5678999999999999999999999 9999999999876
No 151
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=99.35 E-value=9.2e-12 Score=119.54 Aligned_cols=95 Identities=16% Similarity=0.149 Sum_probs=78.9
Q ss_pred CCeEEEECCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHc
Q 003969 567 SNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN 646 (783)
Q Consensus 567 ~gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~n 646 (783)
.+..|.++++ +........+.++..+...+ .++.+|||+|||+|.+++.+++.+..|+|||+++.+++.|++|+..+
T Consensus 10 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~ 86 (171)
T 1ws6_A 10 RGVALKVPAS-ARPSPVRLRKALFDYLRLRY--PRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRT 86 (171)
T ss_dssp TTCEECCCTT-CCCCCHHHHHHHHHHHHHHC--TTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHH
T ss_pred CCeEecCCCC-CCCCHHHHHHHHHHHHHhhc--cCCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHc
Confidence 4778888888 66666666666666554322 25679999999999999999999878999999999999999999999
Q ss_pred CCCcEEEEEccHHHHHHHH
Q 003969 647 GIKNCRFVCAKAEDVMGSL 665 (783)
Q Consensus 647 gl~nv~f~~gDaed~l~~l 665 (783)
++ +++++++|+.+.++.+
T Consensus 87 ~~-~~~~~~~d~~~~~~~~ 104 (171)
T 1ws6_A 87 GL-GARVVALPVEVFLPEA 104 (171)
T ss_dssp TC-CCEEECSCHHHHHHHH
T ss_pred CC-ceEEEeccHHHHHHhh
Confidence 98 8999999999876544
No 152
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.34 E-value=2.8e-12 Score=116.58 Aligned_cols=73 Identities=14% Similarity=0.180 Sum_probs=66.3
Q ss_pred ccccEEEeCCCcc-cCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 003969 164 VELSKCLVHLPRK-WHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (783)
Q Consensus 164 ~~~~i~V~nLp~~-~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr 240 (783)
...+|||+|||+. +++++|+++|+++| |..+.+ ++|||||+|.+.++|++||+.|||..++|+.|+|..|+++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 3568999999999 99999999999996 666665 6899999999999999999999999999999999999754
No 153
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.34 E-value=4.8e-12 Score=118.81 Aligned_cols=79 Identities=23% Similarity=0.189 Sum_probs=68.7
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccE-EEEEeCCHHHHHHHHHHHcCCccCC--ceeEEEecC
Q 003969 163 DVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTV-GFVKFESVEQLKNAVEELEGISIGN--KTLKVANVV 238 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gf-gFVtF~s~Eea~kAIe~LnG~~~~G--r~L~V~~A~ 238 (783)
..-+.|||+|||+.+++++|+++|++|| |..+++.++ .|| |||+|.+.++|.+||+.|||..|.| +.|+|..|+
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR--NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES--SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 3346799999999999999999999996 766666553 497 9999999999999999999999987 699999999
Q ss_pred CCCcc
Q 003969 239 PRSFD 243 (783)
Q Consensus 239 pr~~~ 243 (783)
++...
T Consensus 101 ~~~l~ 105 (124)
T 2e5i_A 101 PTRLN 105 (124)
T ss_dssp CSCCC
T ss_pred CCcce
Confidence 88653
No 154
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=3.4e-12 Score=116.50 Aligned_cols=79 Identities=19% Similarity=0.308 Sum_probs=68.5
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCccC--------C
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIG--------N 229 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~--------G 229 (783)
.....+|||+|||+.+++++|+++|+++| |...++.+ ++++|||||+|.+.++|++||+.|||..++ |
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 34457899999999999999999999995 77777766 567899999999999999999999999994 6
Q ss_pred ceeEEEecCCC
Q 003969 230 KTLKVANVVPR 240 (783)
Q Consensus 230 r~L~V~~A~pr 240 (783)
+.|+|..|.|+
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 77888888764
No 155
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=99.34 E-value=5.9e-12 Score=121.82 Aligned_cols=92 Identities=25% Similarity=0.486 Sum_probs=79.8
Q ss_pred eEEEECCCccccCC--HHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHc
Q 003969 569 LRFCISPTAFFQVN--TLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN 646 (783)
Q Consensus 569 l~f~isp~sFfQvN--~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~n 646 (783)
++|.+++..|+|.+ +.....+...+.+.+...++.+|||+|||+|.+++.+++...+|+|+|+++.+++.|++|+..+
T Consensus 1 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~ 80 (183)
T 2yxd_A 1 MKYMIPDEEFIRREGVPITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKF 80 (183)
T ss_dssp ---CCCSTTSCCBTTBCCCCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHT
T ss_pred CCccCCchheeeccCCCcCHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHc
Confidence 36788999999877 5555667777777777778889999999999999999997789999999999999999999999
Q ss_pred CCCcEEEEEccHHH
Q 003969 647 GIKNCRFVCAKAED 660 (783)
Q Consensus 647 gl~nv~f~~gDaed 660 (783)
++.+++++++|+.+
T Consensus 81 ~~~~~~~~~~d~~~ 94 (183)
T 2yxd_A 81 NIKNCQIIKGRAED 94 (183)
T ss_dssp TCCSEEEEESCHHH
T ss_pred CCCcEEEEECCccc
Confidence 99899999999987
No 156
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.34 E-value=3e-12 Score=123.61 Aligned_cols=79 Identities=13% Similarity=0.138 Sum_probs=70.8
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 163 DVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
.+..+|||+|||+.+++++|+++|+++| |..+.+.. ++++|||||+|.+.++|++||+.|||..|+|+.|+|..|
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4567899999999999999999999995 77777765 457899999999999999999999999999999999999
Q ss_pred CCCC
Q 003969 238 VPRS 241 (783)
Q Consensus 238 ~pr~ 241 (783)
.++.
T Consensus 117 ~~~~ 120 (156)
T 1h2v_Z 117 AGFK 120 (156)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8754
No 157
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=4.7e-13 Score=125.45 Aligned_cols=78 Identities=15% Similarity=0.155 Sum_probs=68.1
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc-c----eeeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEE
Q 003969 164 VELSKCLVHLPRKWHSDNLKKFLADHG-I----LYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235 (783)
Q Consensus 164 ~~~~i~V~nLp~~~~~~~Lkklf~~~~-v----~~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~ 235 (783)
...+|||+|||+.+++++|++||++|+ | ..+.+.+ ++++|||||+|.++++|++||+. ||..+.||.|+|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Confidence 457899999999999999999999996 2 4566654 67899999999999999999997 9999999999999
Q ss_pred ecCCCCc
Q 003969 236 NVVPRSF 242 (783)
Q Consensus 236 ~A~pr~~ 242 (783)
.|.++..
T Consensus 101 ~a~~~e~ 107 (123)
T 2dha_A 101 RSTAAEV 107 (123)
T ss_dssp EECHHHH
T ss_pred ECCHHHH
Confidence 8866543
No 158
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.33 E-value=7.6e-13 Score=136.67 Aligned_cols=76 Identities=14% Similarity=0.097 Sum_probs=68.6
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc---ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHG---ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~---v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
..+|||+|||+.+++++|+++|++|| |..++|++ ++++|||||+|.+.++|++||+.|||+.|.||.|+|..|
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a 147 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV 147 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence 45799999999999999999999998 66667665 578899999999999999999999999999999999998
Q ss_pred CCC
Q 003969 238 VPR 240 (783)
Q Consensus 238 ~pr 240 (783)
++.
T Consensus 148 ~~~ 150 (229)
T 3q2s_C 148 NKQ 150 (229)
T ss_dssp CHH
T ss_pred CCC
Confidence 654
No 159
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.33 E-value=2.2e-12 Score=119.58 Aligned_cols=75 Identities=13% Similarity=0.158 Sum_probs=67.4
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~p 239 (783)
..+|||+|||+.+++++|+++|+++| |..+.+.. ++++|||||+|.+.++|++|| .|||..++|+.|+|..|++
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 35799999999999999999999995 66666654 577899999999999999999 8999999999999998875
Q ss_pred C
Q 003969 240 R 240 (783)
Q Consensus 240 r 240 (783)
.
T Consensus 115 ~ 115 (124)
T 2jwn_A 115 N 115 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 160
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.33 E-value=2.4e-12 Score=113.30 Aligned_cols=76 Identities=14% Similarity=0.217 Sum_probs=60.8
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCcc--CCceeEEEecC
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISI--GNKTLKVANVV 238 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~--~Gr~L~V~~A~ 238 (783)
..+..+|||+|||+.+++++|+++|+++| |..+++++ +++|||||+|.+.++|+ .|+|..+ +|+.|.|..|.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~-~srGfaFV~F~~~~~A~----~~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK-PFRAFAFVTFADDKVAQ----SLCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCS-SCCSEEEEEESCHHHHH----HHTTCEEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEee-CCCCEEEEEECCHHHHH----HHcCCCcccCCEEEEEEEcC
Confidence 45678999999999999999999999996 66666655 58999999999999987 4788775 48999999998
Q ss_pred CCCc
Q 003969 239 PRSF 242 (783)
Q Consensus 239 pr~~ 242 (783)
||..
T Consensus 83 ~k~~ 86 (89)
T 3d2w_A 83 PKHN 86 (89)
T ss_dssp ----
T ss_pred CCCc
Confidence 8753
No 161
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.33 E-value=2.1e-12 Score=126.21 Aligned_cols=79 Identities=18% Similarity=0.167 Sum_probs=70.0
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 003969 164 VELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 164 ~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
++..|||+|||+.+++++|+++|++|| |..+.+++ ++++|||||+|.+.++|++||+.|||..|.|+.|+|..|.
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 150 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 150 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 356799999999999999999999995 77777765 4578999999999999999999999999999999999997
Q ss_pred CCCc
Q 003969 239 PRSF 242 (783)
Q Consensus 239 pr~~ 242 (783)
++..
T Consensus 151 ~~~~ 154 (165)
T 1rk8_A 151 VKGP 154 (165)
T ss_dssp ECC-
T ss_pred CCCC
Confidence 7654
No 162
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=2e-12 Score=118.55 Aligned_cols=77 Identities=18% Similarity=0.255 Sum_probs=69.6
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~p 239 (783)
..+|||+|||+.+++++|+++|.+|| |..+.++. ++++|||||+|.+.++|++||+. ||..+.|+.|+|..|.+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 46799999999999999999999995 77777765 56789999999999999999999 99999999999999987
Q ss_pred CCc
Q 003969 240 RSF 242 (783)
Q Consensus 240 r~~ 242 (783)
+..
T Consensus 106 ~~~ 108 (116)
T 1x4b_A 106 REE 108 (116)
T ss_dssp CCC
T ss_pred Ccc
Confidence 753
No 163
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.33 E-value=2.3e-12 Score=118.65 Aligned_cols=74 Identities=23% Similarity=0.360 Sum_probs=63.5
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCce-----eEEEec
Q 003969 164 VELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKT-----LKVANV 237 (783)
Q Consensus 164 ~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~-----L~V~~A 237 (783)
...+|||+|||+.+++++|+++|.++| |..+.+.+. |||||+|.+.++|++||+.|||+.++|+. |+|..+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~ 91 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 91 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccC
Confidence 467899999999999999999999995 666666544 99999999999999999999999999998 777777
Q ss_pred CCC
Q 003969 238 VPR 240 (783)
Q Consensus 238 ~pr 240 (783)
.++
T Consensus 92 ~~~ 94 (115)
T 3beg_B 92 GPR 94 (115)
T ss_dssp C--
T ss_pred CCC
Confidence 664
No 164
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=99.33 E-value=2.1e-12 Score=129.66 Aligned_cols=93 Identities=11% Similarity=0.169 Sum_probs=65.2
Q ss_pred CCeEEEECCCccccCCHHHHHHHHHHHhhhccC-CCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHH
Q 003969 567 SNLRFCISPTAFFQVNTLAAEKLYSLGGDWADL-GPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAE 644 (783)
Q Consensus 567 ~gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~~-~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~ 644 (783)
.|..+...++..+. ...+.+...+.+++.. .++.+|||+|||+|.+++.++... .+|+|||+++.|++.|++|+.
T Consensus 21 ~g~~l~~~~~~~~r---p~~~~~~~~l~~~l~~~~~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~ 97 (201)
T 2ift_A 21 RGRKLPVLNSEGLR---PTGDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQ 97 (201)
T ss_dssp TTCEEECC------------CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHH
T ss_pred CCcEecCCCCCCcC---cCHHHHHHHHHHHHHHhcCCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHH
Confidence 45666655543222 2222333333333322 256899999999999999876664 699999999999999999999
Q ss_pred HcCC--CcEEEEEccHHHHH
Q 003969 645 INGI--KNCRFVCAKAEDVM 662 (783)
Q Consensus 645 ~ngl--~nv~f~~gDaed~l 662 (783)
.+++ .+++|+++|+.+++
T Consensus 98 ~~~~~~~~v~~~~~d~~~~~ 117 (201)
T 2ift_A 98 TLKCSSEQAEVINQSSLDFL 117 (201)
T ss_dssp HTTCCTTTEEEECSCHHHHT
T ss_pred HhCCCccceEEEECCHHHHH
Confidence 9999 68999999998753
No 165
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=6.8e-12 Score=112.44 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=69.3
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
..+..+|||+|||+.+++++|+++|+++| |..+.++. ++++|||||+|.+.++|++||+ +|..+.|+.|+|..
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 34466899999999999999999999995 77777765 5678999999999999999999 58899999999999
Q ss_pred cCCCCc
Q 003969 237 VVPRSF 242 (783)
Q Consensus 237 A~pr~~ 242 (783)
|.++..
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 987754
No 166
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=4.3e-12 Score=112.09 Aligned_cols=76 Identities=20% Similarity=0.283 Sum_probs=63.7
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec-cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCC
Q 003969 164 VELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK-KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRS 241 (783)
Q Consensus 164 ~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~-~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr~ 241 (783)
...+|||+|||+.+++++|+++|+++| |..+ +.. ..++ ||||+|.+.++|++||+ |||..+.|+.|+|..|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 345899999999999999999999996 5443 222 2233 99999999999999999 99999999999999887654
Q ss_pred c
Q 003969 242 F 242 (783)
Q Consensus 242 ~ 242 (783)
.
T Consensus 84 ~ 84 (94)
T 2e5g_A 84 F 84 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 167
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.31 E-value=1.3e-12 Score=110.00 Aligned_cols=70 Identities=13% Similarity=0.214 Sum_probs=62.5
Q ss_pred cEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 167 SKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 167 ~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
+|||+|||+.+++++|+++|+++| |....+.+ ++++|||||+|.+.++|++||+. +|..+.|+.|+|..|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999999996 66666654 56789999999999999999995 999999999999765
No 168
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.31 E-value=4.8e-12 Score=119.71 Aligned_cols=81 Identities=20% Similarity=0.185 Sum_probs=70.1
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccE-EEEEeCCHHHHHHHHHHHcCCccCC--ceeEEEec
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTV-GFVKFESVEQLKNAVEELEGISIGN--KTLKVANV 237 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gf-gFVtF~s~Eea~kAIe~LnG~~~~G--r~L~V~~A 237 (783)
..+-++|||+|||+.+++++|+++|++|| |..+++.. +++|| |||+|.+.++|++||+.|||+.|.| +.|+|..|
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~-~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT-KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEE-ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEc-CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 34457899999999999999999999996 66665544 45788 9999999999999999999999988 89999999
Q ss_pred CCCCcc
Q 003969 238 VPRSFD 243 (783)
Q Consensus 238 ~pr~~~ 243 (783)
+++...
T Consensus 104 k~~~l~ 109 (130)
T 3zzy_A 104 KLTSLN 109 (130)
T ss_dssp SCSSCC
T ss_pred CCCcee
Confidence 887554
No 169
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=8.9e-12 Score=110.68 Aligned_cols=76 Identities=21% Similarity=0.233 Sum_probs=66.9
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr 240 (783)
..+..+|||+|| .+++++|+++|++|| |..+.+ .+++|||||+|.+.++|++||+.|||..++|+.|+|..|+++
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i--~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM--DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE--ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe--cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 445678999996 899999999999996 555444 578899999999999999999999999999999999999776
Q ss_pred C
Q 003969 241 S 241 (783)
Q Consensus 241 ~ 241 (783)
+
T Consensus 88 ~ 88 (97)
T 1x5p_A 88 P 88 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 170
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.97 E-value=2.2e-13 Score=125.08 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=69.4
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhcc-cee--------eEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCC
Q 003969 163 DVELSKCLVHLPRKWHSDNLKKFLADHG-ILY--------KSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGN 229 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~--------~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~G 229 (783)
.+..+|||+|||+.+++++|+++|+++| |.. +++.. ++++|||||+|.+.++|++||+.|||..|+|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 4456899999999999999999999996 544 44544 5678999999999999999999999999999
Q ss_pred ceeEEEecCCCC
Q 003969 230 KTLKVANVVPRS 241 (783)
Q Consensus 230 r~L~V~~A~pr~ 241 (783)
+.|+|..|++++
T Consensus 85 ~~l~V~~a~~~~ 96 (116)
T 2lcw_A 85 NPIKVSFATRRA 96 (116)
Confidence 999999998764
No 171
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.29 E-value=3.6e-12 Score=129.14 Aligned_cols=77 Identities=21% Similarity=0.314 Sum_probs=70.1
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec--cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCC
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK--KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRS 241 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~--~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr~ 241 (783)
..+|||+|||+.+++++|+++|+++| |..++|.. +.++|||||+|.+.++|++||+.|||..+.||.|+|..|++|.
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHH
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCc
Confidence 35799999999999999999999995 77777766 4578999999999999999999999999999999999998764
No 172
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=99.29 E-value=9.2e-12 Score=121.53 Aligned_cols=96 Identities=16% Similarity=0.171 Sum_probs=72.4
Q ss_pred CCeEEEECCCcccc-CCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHH
Q 003969 567 SNLRFCISPTAFFQ-VNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAE 644 (783)
Q Consensus 567 ~gl~f~isp~sFfQ-vN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~ 644 (783)
.|.+|.+.++.... ......+.++..+. ...++.+|||+|||+|.+++.+++.. .+|+|||+++.+++.|++|+.
T Consensus 12 ~~~~~~~~~~~~~rp~~~~~~~~~~~~l~---~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~ 88 (187)
T 2fhp_A 12 GGRRLKALDGDNTRPTTDKVKESIFNMIG---PYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIA 88 (187)
T ss_dssp TTCBCCCCCCCSSCCCCHHHHHHHHHHHC---SCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHH
T ss_pred cCccccCCCCCCcCcCHHHHHHHHHHHHH---hhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHH
Confidence 45666666654332 33333333433332 23467899999999999999888875 699999999999999999999
Q ss_pred HcCC-CcEEEEEccHHHHHHHH
Q 003969 645 INGI-KNCRFVCAKAEDVMGSL 665 (783)
Q Consensus 645 ~ngl-~nv~f~~gDaed~l~~l 665 (783)
.+++ .+++|+++|+.+.+..+
T Consensus 89 ~~~~~~~~~~~~~d~~~~~~~~ 110 (187)
T 2fhp_A 89 ITKEPEKFEVRKMDANRALEQF 110 (187)
T ss_dssp HHTCGGGEEEEESCHHHHHHHH
T ss_pred HhCCCcceEEEECcHHHHHHHH
Confidence 9998 57999999999876644
No 173
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.27 E-value=2.2e-11 Score=137.22 Aligned_cols=80 Identities=15% Similarity=0.158 Sum_probs=71.8
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 163 DVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
.+..+|||+|||+.+++++|+++|++|| |..+.|+. ++++|||||+|.+.++|++||+.|||+.|.|+.|.|..|
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 3456899999999999999999999996 77777764 567999999999999999999999999999999999999
Q ss_pred CCCCc
Q 003969 238 VPRSF 242 (783)
Q Consensus 238 ~pr~~ 242 (783)
.++..
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 87643
No 174
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.24 E-value=1.4e-11 Score=122.31 Aligned_cols=79 Identities=11% Similarity=0.249 Sum_probs=71.0
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
...+.+|||+|||+.+++++|+++|+++| |..+.+.. ++++|||||+|.+.++|++||+.|||..++|+.|+|..|
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34567899999999999999999999995 77777766 678899999999999999999999999999999999988
Q ss_pred CCC
Q 003969 238 VPR 240 (783)
Q Consensus 238 ~pr 240 (783)
.+.
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 654
No 175
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=99.24 E-value=5.8e-11 Score=118.40 Aligned_cols=80 Identities=18% Similarity=0.101 Sum_probs=69.5
Q ss_pred ccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEcc
Q 003969 579 FQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAK 657 (783)
Q Consensus 579 fQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gD 657 (783)
|+++...+..++..+... ...++.+|||+|||+|.+++.+++.. .+|+|||+++.+++.|++|+..+++ +++++++|
T Consensus 28 ~~~~~~~~~~l~~~~~~~-~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d 105 (207)
T 1wy7_A 28 YRTPGNAASELLWLAYSL-GDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGD 105 (207)
T ss_dssp CCCCHHHHHHHHHHHHHT-TSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESC
T ss_pred ecCchHHHHHHHHHHHHc-CCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC-CEEEEECc
Confidence 678888888888766543 44567899999999999999999884 5899999999999999999999988 89999999
Q ss_pred HHH
Q 003969 658 AED 660 (783)
Q Consensus 658 aed 660 (783)
+.+
T Consensus 106 ~~~ 108 (207)
T 1wy7_A 106 VSE 108 (207)
T ss_dssp GGG
T ss_pred hHH
Confidence 775
No 176
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.24 E-value=4.6e-12 Score=113.31 Aligned_cols=76 Identities=17% Similarity=0.249 Sum_probs=67.8
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 003969 164 VELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (783)
Q Consensus 164 ~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~p 239 (783)
...+|||+|||+.+++++|+++|+++| |..+++.. ++++|||||+|.+.++|++||+ ||..+.|+.|.|..|.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 356899999999999999999999995 76677665 5678999999999999999999 99999999999998876
Q ss_pred CC
Q 003969 240 RS 241 (783)
Q Consensus 240 r~ 241 (783)
+.
T Consensus 86 ~~ 87 (102)
T 2xs2_A 86 KQ 87 (102)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 177
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=99.24 E-value=3.2e-11 Score=134.11 Aligned_cols=96 Identities=15% Similarity=0.162 Sum_probs=76.0
Q ss_pred eEEeeCCeEEEECCCc-----cccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHH
Q 003969 562 IHDSISNLRFCISPTA-----FFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAV 636 (783)
Q Consensus 562 I~E~i~gl~f~isp~s-----FfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AI 636 (783)
+.-.-+|++|.+.+.. ||...+..... +..++ .+|.+|||+|||+|.+++.+++.+..|+|||+++.|+
T Consensus 176 ~~v~E~g~~f~vd~~~~~~tG~f~dqr~~r~~----l~~~~--~~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al 249 (393)
T 4dmg_A 176 LEVEEDGLRFPIPLALAQKTGYYLDQRENRRL----FEAMV--RPGERVLDVYSYVGGFALRAARKGAYALAVDKDLEAL 249 (393)
T ss_dssp EEEEETTEEEEEETTTCCTTSSCGGGHHHHHH----HHTTC--CTTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHH
T ss_pred EEEEECCEEEEEechhccccCcCCCHHHHHHH----HHHHh--cCCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHH
Confidence 3334589999999876 66655544222 23332 2588999999999999999999887799999999999
Q ss_pred HHHHHHHHHcCCCcEEEEEccHHHHHHH
Q 003969 637 SDAHRNAEINGIKNCRFVCAKAEDVMGS 664 (783)
Q Consensus 637 e~Ak~Na~~ngl~nv~f~~gDaed~l~~ 664 (783)
+.|++|++.|++.+ .+.++|+.+++..
T Consensus 250 ~~a~~n~~~ng~~~-~~~~~D~~~~l~~ 276 (393)
T 4dmg_A 250 GVLDQAALRLGLRV-DIRHGEALPTLRG 276 (393)
T ss_dssp HHHHHHHHHHTCCC-EEEESCHHHHHHT
T ss_pred HHHHHHHHHhCCCC-cEEEccHHHHHHH
Confidence 99999999999963 6779999987653
No 178
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.23 E-value=2e-11 Score=116.68 Aligned_cols=77 Identities=21% Similarity=0.393 Sum_probs=68.4
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~p 239 (783)
..+|||+|||+.+++++|+++|+++| |...++++ ++++|||||+|.+.++|++|++.|||..+.|+.|+|..+.|
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 35799999999999999999999996 66666665 45679999999999999999999999999999999998876
Q ss_pred CC
Q 003969 240 RS 241 (783)
Q Consensus 240 r~ 241 (783)
+.
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 179
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=2.7e-11 Score=107.95 Aligned_cols=72 Identities=11% Similarity=0.101 Sum_probs=61.2
Q ss_pred EEEeCCCcccCHHHHH----HHhhhccceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCCcc
Q 003969 168 KCLVHLPRKWHSDNLK----KFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRSFD 243 (783)
Q Consensus 168 i~V~nLp~~~~~~~Lk----klf~~~~v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr~~~ 243 (783)
|||+|||+.++.++|+ .+|++||-....| .+ |||||.|.+.|+|++|++.|||.++.||.|+|..|+.+.+.
T Consensus 12 lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd~ 87 (96)
T 2diu_A 12 LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNREL 87 (96)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCCC
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCcce
Confidence 9999999999998855 7999995222222 22 99999999999999999999999999999999999877553
No 180
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=99.23 E-value=4e-11 Score=125.93 Aligned_cols=93 Identities=26% Similarity=0.264 Sum_probs=81.2
Q ss_pred eeCCeEEEECCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHH
Q 003969 565 SISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRN 642 (783)
Q Consensus 565 ~i~gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~N 642 (783)
.+++..|.+.++.|.+ +...+.++..+++.+. .++.+|||+|||+|.+++.+++. ..+|+|+|+++.+++.|++|
T Consensus 76 ~f~~~~~~~~~~~~ip--r~~te~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n 152 (276)
T 2b3t_A 76 EFWSLPLFVSPATLIP--RPDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRN 152 (276)
T ss_dssp EETTEEEECCTTSCCC--CTTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHH
T ss_pred EECCceEEeCCCCccc--CchHHHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 4678999999999964 4457778888888765 56679999999999999999976 46999999999999999999
Q ss_pred HHHcCCCcEEEEEccHHH
Q 003969 643 AEINGIKNCRFVCAKAED 660 (783)
Q Consensus 643 a~~ngl~nv~f~~gDaed 660 (783)
+..+++.+++|+++|+.+
T Consensus 153 ~~~~~~~~v~~~~~d~~~ 170 (276)
T 2b3t_A 153 AQHLAIKNIHILQSDWFS 170 (276)
T ss_dssp HHHHTCCSEEEECCSTTG
T ss_pred HHHcCCCceEEEEcchhh
Confidence 999999899999999765
No 181
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.23 E-value=1.8e-11 Score=117.58 Aligned_cols=77 Identities=25% Similarity=0.306 Sum_probs=68.4
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 003969 164 VELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 164 ~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
+..+|||+|||+.+++++|+++|+++| |...++++ ++++|||||+|.+.++|++|++.|||..+.|+.|+|..+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 346799999999999999999999996 66666654 4578999999999999999999999999999999999886
Q ss_pred CC
Q 003969 239 PR 240 (783)
Q Consensus 239 pr 240 (783)
++
T Consensus 82 ~~ 83 (168)
T 1b7f_A 82 PG 83 (168)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 182
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.23 E-value=1.4e-11 Score=119.72 Aligned_cols=79 Identities=16% Similarity=0.241 Sum_probs=69.7
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr 240 (783)
.....+|||+|||+.+++++|+++|+++| |... ...++++|||||+|.+.++|.+|++.|||..+.|+.|+|..|.||
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 34467899999999999999999999995 4444 233788999999999999999999999999999999999999887
Q ss_pred C
Q 003969 241 S 241 (783)
Q Consensus 241 ~ 241 (783)
+
T Consensus 175 ~ 175 (175)
T 1fje_B 175 G 175 (175)
T ss_dssp C
T ss_pred C
Confidence 4
No 183
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=99.23 E-value=8.3e-12 Score=139.16 Aligned_cols=89 Identities=16% Similarity=0.148 Sum_probs=73.0
Q ss_pred EECCC-ccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHc--CC
Q 003969 572 CISPT-AFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN--GI 648 (783)
Q Consensus 572 ~isp~-sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~n--gl 648 (783)
.+.|. +|.|..++...... ...+ .+|.+|||||||+|.+++.|++.+.+|+|||+++.+++.|++|++.+ |+
T Consensus 68 ~~p~~~~~eQat~e~vA~~~---a~~l--~~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl 142 (410)
T 3ll7_A 68 YIPSRLSLEQSSGAVTSSYK---SRFI--REGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEG 142 (410)
T ss_dssp CCCCHHHHHHSCCHHHHHHG---GGGS--CTTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTT
T ss_pred ecCCCCChhhcCHHHHHHHH---HHhc--CCCCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCC
Confidence 34566 78887776554332 1222 24789999999999999999999999999999999999999999998 89
Q ss_pred CcEEEEEccHHHHHHHH
Q 003969 649 KNCRFVCAKAEDVMGSL 665 (783)
Q Consensus 649 ~nv~f~~gDaed~l~~l 665 (783)
.+++|+++|+.++++.+
T Consensus 143 ~~i~~i~~Da~~~L~~~ 159 (410)
T 3ll7_A 143 KDVNILTGDFKEYLPLI 159 (410)
T ss_dssp CEEEEEESCGGGSHHHH
T ss_pred CcEEEEECcHHHhhhhc
Confidence 88999999999877643
No 184
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=99.22 E-value=1.2e-11 Score=127.79 Aligned_cols=97 Identities=14% Similarity=0.033 Sum_probs=82.0
Q ss_pred EeeCCeEEEECCCccccC--CHHHHHHHHHHHhhhccC--CCCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHH
Q 003969 564 DSISNLRFCISPTAFFQV--NTLAAEKLYSLGGDWADL--GPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVS 637 (783)
Q Consensus 564 E~i~gl~f~isp~sFfQv--N~~~ae~L~~~i~~~l~~--~~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe 637 (783)
..+.|+.|.++++.|+|. ++...+.++..++..+.. .++.+|||+|||+|.+++.|+.. ..+|+|||+++.|++
T Consensus 24 ~~~~~~~~~~~~~~~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~ 103 (254)
T 2h00_A 24 REDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFN 103 (254)
T ss_dssp HHHHCCCCCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHH
T ss_pred HHcCCeeeecCccccCCCccchHHHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHH
Confidence 345688899999999996 566677777777776543 25679999999999999999876 479999999999999
Q ss_pred HHHHHHHHcCCCc-EEEEEccHHH
Q 003969 638 DAHRNAEINGIKN-CRFVCAKAED 660 (783)
Q Consensus 638 ~Ak~Na~~ngl~n-v~f~~gDaed 660 (783)
.|++|+..+++.+ ++|+++|+.+
T Consensus 104 ~a~~~~~~~~~~~~v~~~~~d~~~ 127 (254)
T 2h00_A 104 YAKKNVEQNNLSDLIKVVKVPQKT 127 (254)
T ss_dssp HHHHHHHHTTCTTTEEEEECCTTC
T ss_pred HHHHHHHHcCCCccEEEEEcchhh
Confidence 9999999999965 9999999765
No 185
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.22 E-value=1.1e-11 Score=119.06 Aligned_cols=76 Identities=13% Similarity=0.276 Sum_probs=68.8
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~p 239 (783)
..+|||+|||+.+++++|+++|+++| |..+.+.. ++++|||||+|.+.++|++|++ |||..+.|+.|+|..|.|
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 44799999999999999999999995 77777664 5778999999999999999998 899999999999999988
Q ss_pred CC
Q 003969 240 RS 241 (783)
Q Consensus 240 r~ 241 (783)
|.
T Consensus 166 k~ 167 (167)
T 2cjk_A 166 RH 167 (167)
T ss_dssp CC
T ss_pred CC
Confidence 73
No 186
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.22 E-value=2.9e-11 Score=112.65 Aligned_cols=76 Identities=21% Similarity=0.241 Sum_probs=66.9
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCC
Q 003969 163 DVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRS 241 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr~ 241 (783)
....+|||+|| .+++++|+++|++|| |..+.+ .+++|||||+|.+.++|++||+.|||..+.|+.|+|..|++++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i--~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM--DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEE--ETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEE--eCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 44668999996 699999999999996 665555 4788999999999999999999999999999999999998764
Q ss_pred c
Q 003969 242 F 242 (783)
Q Consensus 242 ~ 242 (783)
.
T Consensus 113 ~ 113 (121)
T 2bz2_A 113 M 113 (121)
T ss_dssp C
T ss_pred C
Confidence 3
No 187
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.22 E-value=2.3e-11 Score=123.25 Aligned_cols=77 Identities=14% Similarity=0.148 Sum_probs=69.0
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 003969 164 VELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 164 ~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
+..+|||+|||+.+++++|+++|+++| |..+++++ ++++|||||+|.+.++|++||+.|||..+.|+.|+|..+.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 345799999999999999999999996 77788775 6788999999999999999999999999999999998775
Q ss_pred CC
Q 003969 239 PR 240 (783)
Q Consensus 239 pr 240 (783)
+.
T Consensus 94 ~~ 95 (213)
T 4f02_A 94 RD 95 (213)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 188
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.21 E-value=3.7e-11 Score=114.74 Aligned_cols=78 Identities=18% Similarity=0.282 Sum_probs=69.6
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
..+...|||+|||+.+++++|+++|+++| |....+.. ++++|||||+|.+.++|.+|++.|||..++|+.|+|..
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 44567899999999999999999999995 67777664 56789999999999999999999999999999999998
Q ss_pred cCC
Q 003969 237 VVP 239 (783)
Q Consensus 237 A~p 239 (783)
|++
T Consensus 164 a~~ 166 (166)
T 3md3_A 164 AAK 166 (166)
T ss_dssp SCC
T ss_pred cCC
Confidence 853
No 189
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=3e-11 Score=110.75 Aligned_cols=76 Identities=11% Similarity=0.057 Sum_probs=62.3
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhccceeeEeec-------cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEE
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKK-------KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKV 234 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~v~~~~i~~-------~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V 234 (783)
.....+|||+|||+.+++++|+++|++||-....++. ++++|||||+|.++++|++||+.|++ +.|+.|.+
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~ 82 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLC 82 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCCEECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEEEEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEe
Confidence 3445789999999999999999999999633355544 36789999999999999999999964 78888887
Q ss_pred EecCC
Q 003969 235 ANVVP 239 (783)
Q Consensus 235 ~~A~p 239 (783)
..+.+
T Consensus 83 ~~~~~ 87 (114)
T 2dnl_A 83 VSSPT 87 (114)
T ss_dssp ECCSS
T ss_pred ccCCC
Confidence 75543
No 190
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=99.20 E-value=3.2e-11 Score=117.33 Aligned_cols=76 Identities=14% Similarity=0.137 Sum_probs=63.5
Q ss_pred HHHHHHhhhcc-CCCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHHHHH
Q 003969 588 KLYSLGGDWAD-LGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAEDVMG 663 (783)
Q Consensus 588 ~L~~~i~~~l~-~~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~~gDaed~l~ 663 (783)
.+...+.+++. ..++.+|||+|||+|.+++.+++.. .+|+|||+++.+++.|++|++.+++. +++++++|+.+.++
T Consensus 17 ~~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 95 (177)
T 2esr_A 17 KVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAID 95 (177)
T ss_dssp -CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHH
Confidence 34444555444 4567899999999999999999884 69999999999999999999999985 79999999998654
No 191
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=99.20 E-value=1.7e-11 Score=121.60 Aligned_cols=91 Identities=22% Similarity=0.286 Sum_probs=59.9
Q ss_pred EEECCCccccCCHHHHHHHHHHHhhhccC-CCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcC
Q 003969 571 FCISPTAFFQVNTLAAEKLYSLGGDWADL-GPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEING 647 (783)
Q Consensus 571 f~isp~sFfQvN~~~ae~L~~~i~~~l~~-~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ng 647 (783)
|.++|+.| +.+...+.++.++++.+.. .++.+|||+|||+|.+++.+++.. .+|+|+|+++.+++.|++|+..++
T Consensus 1 f~~~~~~~--~p~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~ 78 (215)
T 4dzr_A 1 FEVGPDCL--IPRPDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFG 78 (215)
T ss_dssp CBCSGGGG--SCCHHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------
T ss_pred CcCCCCcc--CCCccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhC
Confidence 45678888 4456678888888888765 678899999999999999999984 499999999999999999999988
Q ss_pred CCcEEEEEccHHHHHHH
Q 003969 648 IKNCRFVCAKAEDVMGS 664 (783)
Q Consensus 648 l~nv~f~~gDaed~l~~ 664 (783)
+ +++++++|+.+.+..
T Consensus 79 ~-~~~~~~~d~~~~~~~ 94 (215)
T 4dzr_A 79 A-VVDWAAADGIEWLIE 94 (215)
T ss_dssp -----CCHHHHHHHHHH
T ss_pred C-ceEEEEcchHhhhhh
Confidence 8 899999999885543
No 192
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.20 E-value=3.7e-11 Score=120.29 Aligned_cols=79 Identities=18% Similarity=0.330 Sum_probs=71.2
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 003969 164 VELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 164 ~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
....|||+|||+.+++++|+++|++|| |..+++.+ ++++|||||+|.+.++|.+|++.|||..++|+.|+|..|.
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEec
Confidence 456899999999999999999999995 77777765 4678999999999999999999999999999999999998
Q ss_pred CCCc
Q 003969 239 PRSF 242 (783)
Q Consensus 239 pr~~ 242 (783)
+++.
T Consensus 204 ~~~~ 207 (216)
T 2qfj_A 204 TPPM 207 (216)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 7754
No 193
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=99.20 E-value=3.2e-11 Score=128.11 Aligned_cols=100 Identities=18% Similarity=0.212 Sum_probs=79.5
Q ss_pred ccccccceEE-eeCCeEEEECCC--ccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC-CEEEEEe
Q 003969 555 NDVVEARIHD-SISNLRFCISPT--AFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIE 630 (783)
Q Consensus 555 ~l~G~~~I~E-~i~gl~f~isp~--sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE 630 (783)
.++|.+.... .-.|++|.+.+. .|++.+...-..+.. ++ .+|.+|||+|||+|.|++.+|+.+ .+|+++|
T Consensus 82 ~L~G~~~~~~~~E~G~~~~~D~~k~~f~~~~~~er~ri~~----~~--~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD 155 (278)
T 3k6r_A 82 LLYGSDTVTVHVENGIKYKLDVAKIMFSPANVKERVRMAK----VA--KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIE 155 (278)
T ss_dssp EEECSCCEEEEEETTEEEEEETTTSCCCGGGHHHHHHHHH----HC--CTTCEEEETTCTTTTTTHHHHHHTCCEEEEEC
T ss_pred EEecCCcEEEEEECCEEEEEeccceEEcCCcHHHHHHHHH----hc--CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEE
Confidence 4556654443 347888888865 676777655544433 22 468899999999999999999886 6999999
Q ss_pred CCHHHHHHHHHHHHHcCCCc-EEEEEccHHH
Q 003969 631 MNASAVSDAHRNAEINGIKN-CRFVCAKAED 660 (783)
Q Consensus 631 ~s~~AIe~Ak~Na~~ngl~n-v~f~~gDaed 660 (783)
+++.|++.|++|++.|++.+ ++++++|+.+
T Consensus 156 ~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~ 186 (278)
T 3k6r_A 156 KDPYTFKFLVENIHLNKVEDRMSAYNMDNRD 186 (278)
T ss_dssp CCHHHHHHHHHHHHHTTCTTTEEEECSCTTT
T ss_pred CCHHHHHHHHHHHHHcCCCCcEEEEeCcHHH
Confidence 99999999999999999965 9999999764
No 194
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.20 E-value=2.7e-11 Score=115.73 Aligned_cols=74 Identities=20% Similarity=0.279 Sum_probs=66.4
Q ss_pred cEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 003969 167 SKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (783)
Q Consensus 167 ~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr 240 (783)
+|||+|||+.+++++|+++|+++| |...++.+ ++++|||||+|.+.++|++|++.|||..+.|+.|+|..+.++
T Consensus 2 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 2 VLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp EEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred EEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 599999999999999999999996 66666655 567899999999999999999999999999999999988654
No 195
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=99.18 E-value=8.2e-11 Score=118.53 Aligned_cols=73 Identities=22% Similarity=0.296 Sum_probs=64.8
Q ss_pred HHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHHH
Q 003969 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAEDV 661 (783)
Q Consensus 589 L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~~gDaed~ 661 (783)
+...++..+.+.++.+|||+|||+|.+++.+++...+|+|||+++.+++.|++|++.+++. +++++++|+.+.
T Consensus 43 ~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~ 116 (204)
T 3njr_A 43 MRALTLAALAPRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAA 116 (204)
T ss_dssp HHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGG
T ss_pred HHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhh
Confidence 3344556667778899999999999999999999889999999999999999999999997 899999998763
No 196
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.18 E-value=3.5e-11 Score=116.16 Aligned_cols=74 Identities=20% Similarity=0.318 Sum_probs=66.9
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 164 VELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 164 ~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
...+|||+|||+.+++++|+++|+++| |....+.+ ++++|||||+|.+.++|++|++.|||..++|+.|+|..|
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 357899999999999999999999995 66666655 456899999999999999999999999999999999876
No 197
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=2.5e-11 Score=105.67 Aligned_cols=74 Identities=16% Similarity=0.229 Sum_probs=61.7
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCcc--CCceeEEEecCCC
Q 003969 164 VELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISI--GNKTLKVANVVPR 240 (783)
Q Consensus 164 ~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~--~Gr~L~V~~A~pr 240 (783)
+..+|||+|||+.+++++|+++|+++| |..+++.+ +++|||||+|.+.++|++ |+|..+ .|+.|+|..|.|+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-~~~g~afV~f~~~~~a~~----~~~~~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPK-PFRAFAFVTFADDQIAQS----LCGEDLIIKGISVHISNAEPK 78 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCS-SCCSCCEEECSCHHHHHH----TTTCEEEETTEEEEEECCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEec-CCCCEEEEEECCHHHHHH----HhcCCceeCCEEEEEEecCCC
Confidence 456899999999999999999999996 66666544 489999999999999975 466554 8999999998876
Q ss_pred Cc
Q 003969 241 SF 242 (783)
Q Consensus 241 ~~ 242 (783)
..
T Consensus 79 ~~ 80 (88)
T 1wf0_A 79 HN 80 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 198
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.17 E-value=4.8e-11 Score=117.67 Aligned_cols=78 Identities=15% Similarity=0.264 Sum_probs=68.6
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
.....+|||+|||+.+++++|+++|+++| |..+++++ ++++|||||+|.+.++|++||+. +|..+.|+.|.|..
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 44567899999999999999999999996 77777765 56789999999999999999987 99999999999998
Q ss_pred cCCC
Q 003969 237 VVPR 240 (783)
Q Consensus 237 A~pr 240 (783)
+.++
T Consensus 89 ~~~~ 92 (196)
T 1l3k_A 89 AVSR 92 (196)
T ss_dssp CCC-
T ss_pred ccCc
Confidence 8654
No 199
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=99.17 E-value=1.2e-10 Score=138.47 Aligned_cols=98 Identities=13% Similarity=0.191 Sum_probs=75.4
Q ss_pred EeeCCeEEEECCCccccCCHHHHHHH-HHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHH
Q 003969 564 DSISNLRFCISPTAFFQVNTLAAEKL-YSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHR 641 (783)
Q Consensus 564 E~i~gl~f~isp~sFfQvN~~~ae~L-~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~ 641 (783)
-.-+|++|.+.+..++++........ ..++..+ .+|.+|||+|||+|.+++.+++.+ .+|++||+++.|++.|++
T Consensus 504 v~E~g~~~~v~~~~~~~tG~f~d~r~~r~~l~~~---~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~ 580 (703)
T 3v97_A 504 VTEYNAHLWVNLTDYLDTGLFLDHRIARRMLGQM---SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAER 580 (703)
T ss_dssp EEETTEEEEECSSSSSSCSCCGGGHHHHHHHHHH---CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred EEECCEEEEEeccccccCCCcccHHHHHHHHHHh---cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHH
Confidence 34489999999886544332211111 1122222 257899999999999999999875 579999999999999999
Q ss_pred HHHHcCCC--cEEEEEccHHHHHHH
Q 003969 642 NAEINGIK--NCRFVCAKAEDVMGS 664 (783)
Q Consensus 642 Na~~ngl~--nv~f~~gDaed~l~~ 664 (783)
|++.||+. +++|+++|+.++++.
T Consensus 581 N~~~ngl~~~~v~~i~~D~~~~l~~ 605 (703)
T 3v97_A 581 NLRLNGLTGRAHRLIQADCLAWLRE 605 (703)
T ss_dssp HHHHTTCCSTTEEEEESCHHHHHHH
T ss_pred HHHHcCCCccceEEEecCHHHHHHh
Confidence 99999996 799999999997653
No 200
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.16 E-value=5.9e-11 Score=115.22 Aligned_cols=79 Identities=20% Similarity=0.282 Sum_probs=67.3
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhccc----eeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHGI----LYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~v----~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
.....+|||+|||+.+++++|+++|.+++. .......++++|||||+|.++++|++|| .|||..+.|+.|+|..+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecC
Confidence 455778999999999999999999999842 2223334789999999999999999999 59999999999999988
Q ss_pred CCCC
Q 003969 238 VPRS 241 (783)
Q Consensus 238 ~pr~ 241 (783)
.++.
T Consensus 89 ~~~~ 92 (175)
T 1fje_B 89 KGRD 92 (175)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 7653
No 201
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.16 E-value=6.9e-11 Score=119.79 Aligned_cols=75 Identities=12% Similarity=0.048 Sum_probs=66.8
Q ss_pred cccEEEeCCC-cccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 003969 165 ELSKCLVHLP-RKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (783)
Q Consensus 165 ~~~i~V~nLp-~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr 240 (783)
+..|||+||| +.+++++|+++|++|| |..+++++ .++|||||+|.+.++|++||+.|||+.+.||.|+|..|+.+
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~-~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMK-SKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECT-TSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEec-CCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCC
Confidence 4579999999 8999999999999996 76666654 35799999999999999999999999999999999988643
No 202
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.16 E-value=5.1e-11 Score=117.65 Aligned_cols=80 Identities=20% Similarity=0.311 Sum_probs=71.2
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
......|||+|||+.+++++|+++|+++| |....+.+ ++++|||||+|.+.++|.+|++.|||..+.|+.|+|..
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34567899999999999999999999995 66666664 45689999999999999999999999999999999999
Q ss_pred cCCCC
Q 003969 237 VVPRS 241 (783)
Q Consensus 237 A~pr~ 241 (783)
|.|+.
T Consensus 191 a~~~~ 195 (198)
T 2yh0_A 191 ASVGA 195 (198)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 98764
No 203
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.15 E-value=5.2e-11 Score=117.38 Aligned_cols=79 Identities=11% Similarity=0.154 Sum_probs=67.3
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 003969 164 VELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 164 ~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
...+|||+|||+.+++++|+++|++|| |..+.+.. ++++|||||+|.+.++|.+||+. +|..+.|+.|+|..|.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 346899999999999999999999996 77777765 56789999999999999999987 8999999999999998
Q ss_pred CCCcc
Q 003969 239 PRSFD 243 (783)
Q Consensus 239 pr~~~ 243 (783)
|+...
T Consensus 182 ~k~~~ 186 (196)
T 1l3k_A 182 SKQEM 186 (196)
T ss_dssp -----
T ss_pred ChhHh
Confidence 87654
No 204
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=99.15 E-value=8.3e-11 Score=122.60 Aligned_cols=93 Identities=20% Similarity=0.376 Sum_probs=75.7
Q ss_pred CCeEEEECCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHc
Q 003969 567 SNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN 646 (783)
Q Consensus 567 ~gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~n 646 (783)
.++.+.++|+.||+++......++-..+... +.++.+|||+|||+|.+++.+++.+.+|+|+|+++.+++.|++|+..|
T Consensus 87 ~~~~~~l~p~~~fgtg~~~tt~~~~~~l~~~-~~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~ 165 (254)
T 2nxc_A 87 AEIPLVIEPGMAFGTGHHETTRLALKALARH-LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRN 165 (254)
T ss_dssp SSEEEECCCC-----CCSHHHHHHHHHHHHH-CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHT
T ss_pred CceEEEECCCccccCCCCHHHHHHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHc
Confidence 4678999999999988877766655555443 456789999999999999999998789999999999999999999999
Q ss_pred CCCcEEEEEccHHHH
Q 003969 647 GIKNCRFVCAKAEDV 661 (783)
Q Consensus 647 gl~nv~f~~gDaed~ 661 (783)
++. ++++++|+.+.
T Consensus 166 ~~~-v~~~~~d~~~~ 179 (254)
T 2nxc_A 166 GVR-PRFLEGSLEAA 179 (254)
T ss_dssp TCC-CEEEESCHHHH
T ss_pred CCc-EEEEECChhhc
Confidence 987 99999998874
No 205
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.15 E-value=8.5e-11 Score=123.31 Aligned_cols=80 Identities=23% Similarity=0.315 Sum_probs=70.4
Q ss_pred CCccccEEEeCCCcccCHHHHH----HHhhhcc-ceeeEeec-cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEE
Q 003969 162 QDVELSKCLVHLPRKWHSDNLK----KFLADHG-ILYKSAKK-KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lk----klf~~~~-v~~~~i~~-~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~ 235 (783)
..+..+|||+|||+.+++++|+ .+|++|| |..+++.+ ++++|||||+|.+.++|++||+.|||..|.|+.|+|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 3456689999999999999988 7999995 66666665 7889999999999999999999999999999999999
Q ss_pred ecCCCC
Q 003969 236 NVVPRS 241 (783)
Q Consensus 236 ~A~pr~ 241 (783)
.|.++.
T Consensus 86 ~a~~~~ 91 (282)
T 3pgw_A 86 YAKTDS 91 (282)
T ss_pred EeccCc
Confidence 886654
No 206
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.15 E-value=6.3e-11 Score=114.33 Aligned_cols=74 Identities=16% Similarity=0.329 Sum_probs=64.8
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhc----cc------eeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEE
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADH----GI------LYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKV 234 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~----~v------~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V 234 (783)
.-+|||+|||+.+++++|+++|+++ |+ ....+..++++|||||+|.++++|++|+ .|||..+.|+.|+|
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v 82 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKI 82 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceeee
Confidence 4579999999999999999999999 53 3344555788999999999999999999 89999999999999
Q ss_pred EecCC
Q 003969 235 ANVVP 239 (783)
Q Consensus 235 ~~A~p 239 (783)
..+.+
T Consensus 83 ~~~~~ 87 (172)
T 2g4b_A 83 RRPHD 87 (172)
T ss_dssp ECCSS
T ss_pred cCCcc
Confidence 86643
No 207
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.15 E-value=8.7e-11 Score=117.57 Aligned_cols=76 Identities=18% Similarity=0.232 Sum_probs=66.1
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~p 239 (783)
..+|||+|||+.+++++|+++|+++| |..+++++ ++++|||||+|.+.++|++|++.|||..+.|+.|+|..+..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 45799999999999999999999996 77777654 56899999999999999999999999999999999976654
Q ss_pred C
Q 003969 240 R 240 (783)
Q Consensus 240 r 240 (783)
+
T Consensus 108 ~ 108 (216)
T 2qfj_A 108 I 108 (216)
T ss_dssp C
T ss_pred c
Confidence 3
No 208
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.14 E-value=3e-11 Score=113.56 Aligned_cols=71 Identities=18% Similarity=0.159 Sum_probs=62.8
Q ss_pred ccEEEeCC----CcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCC----HHH----HHHHHH--HHcCCc
Q 003969 166 LSKCLVHL----PRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFES----VEQ----LKNAVE--ELEGIS 226 (783)
Q Consensus 166 ~~i~V~nL----p~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s----~Ee----a~kAIe--~LnG~~ 226 (783)
.+|||+|| |+.+++.+|+.+|++|| |..+.++. ++++|||||+|.+ +++ |.+||+ .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 47999999 99999999999999995 88888887 7899999999996 444 899999 899999
Q ss_pred cCCceeEEEe
Q 003969 227 IGNKTLKVAN 236 (783)
Q Consensus 227 ~~Gr~L~V~~ 236 (783)
+.||+|+|..
T Consensus 83 I~Gr~irV~l 92 (136)
T 2j8a_A 83 IMGFKFEVIL 92 (136)
T ss_dssp ETTEEEEEEE
T ss_pred ecCcEEEEEE
Confidence 9999999973
No 209
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=99.13 E-value=8.8e-11 Score=120.06 Aligned_cols=89 Identities=22% Similarity=0.326 Sum_probs=74.3
Q ss_pred EEECCCccccCCHHH-HHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCC-
Q 003969 571 FCISPTAFFQVNTLA-AEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI- 648 (783)
Q Consensus 571 f~isp~sFfQvN~~~-ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl- 648 (783)
+.+.+.+|||.++.. +..+...+... .++.+|||+|||+|.+++.|++.+.+|+|||+++.+++.|++|+..+++
T Consensus 50 ~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 126 (241)
T 3gdh_A 50 IKLDREGWFSVTPEKIAEHIAGRVSQS---FKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIA 126 (241)
T ss_dssp CCCCHHHHHHCCCHHHHHHHHHHHHHH---SCCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCG
T ss_pred ceecccceeecCHHHHHHHHHHHhhhc---cCCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 344677888877753 45555555443 2578999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEccHHHHH
Q 003969 649 KNCRFVCAKAEDVM 662 (783)
Q Consensus 649 ~nv~f~~gDaed~l 662 (783)
.+++|+++|+.++.
T Consensus 127 ~~~~~~~~d~~~~~ 140 (241)
T 3gdh_A 127 DKIEFICGDFLLLA 140 (241)
T ss_dssp GGEEEEESCHHHHG
T ss_pred cCeEEEECChHHhc
Confidence 68999999998753
No 210
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.13 E-value=5.6e-11 Score=117.38 Aligned_cols=75 Identities=16% Similarity=0.317 Sum_probs=66.0
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhc----cc------eeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEE
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADH----GI------LYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKV 234 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~----~v------~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V 234 (783)
.-+|||+|||+.+++++|+++|+++ ++ ....+..++++|||||+|.+.++|++|| .|||..+.|+.|+|
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v 82 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKI 82 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEE
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEE
Confidence 4579999999999999999999999 53 3344455788999999999999999999 89999999999999
Q ss_pred EecCCC
Q 003969 235 ANVVPR 240 (783)
Q Consensus 235 ~~A~pr 240 (783)
..+.++
T Consensus 83 ~~~~~~ 88 (198)
T 2yh0_A 83 RRPHDY 88 (198)
T ss_dssp ECCCCC
T ss_pred eCCCCC
Confidence 987654
No 211
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=1.5e-10 Score=105.86 Aligned_cols=79 Identities=14% Similarity=0.118 Sum_probs=66.3
Q ss_pred ccccEEEeCCCcccC-----------HHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCce
Q 003969 164 VELSKCLVHLPRKWH-----------SDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKT 231 (783)
Q Consensus 164 ~~~~i~V~nLp~~~~-----------~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~ 231 (783)
+.--|+|+||..... +++|+++|++|| |..+.|..+.++|||||+|.+.++|++||+.|||..++||+
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 93 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQ 93 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEE
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 344599999944332 579999999996 66666544668999999999999999999999999999999
Q ss_pred eEEEecCCCCc
Q 003969 232 LKVANVVPRSF 242 (783)
Q Consensus 232 L~V~~A~pr~~ 242 (783)
|+|..|.++..
T Consensus 94 l~v~~a~~~~~ 104 (112)
T 2dit_A 94 ITAQAWDGTTD 104 (112)
T ss_dssp CEEEECCSCCC
T ss_pred EEEEEeCCCCC
Confidence 99999988643
No 212
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=99.12 E-value=3.7e-10 Score=109.97 Aligned_cols=97 Identities=22% Similarity=0.356 Sum_probs=79.2
Q ss_pred cceEEeeCCeEEEE-CCCccccCCH--HHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHH
Q 003969 560 ARIHDSISNLRFCI-SPTAFFQVNT--LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAV 636 (783)
Q Consensus 560 ~~I~E~i~gl~f~i-sp~sFfQvN~--~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AI 636 (783)
.++.+.+.+..+.+ ....||+.+. ..++.++ +.+...++.+|||+|||+|.+++.+++...+|+|+|+++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~ 87 (194)
T 1dus_A 12 KIVEDILRGKKLKFKTDSGVFSYGKVDKGTKILV----ENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAI 87 (194)
T ss_dssp EEEEEEETTEEEEEEEETTSTTTTSCCHHHHHHH----HHCCCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHH
T ss_pred cEEeeecCCCceEEEeCCCcCCccccchHHHHHH----HHcccCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHH
Confidence 45677788888877 4567776664 4444444 444556788999999999999999999888999999999999
Q ss_pred HHHHHHHHHcCCCc--EEEEEccHHH
Q 003969 637 SDAHRNAEINGIKN--CRFVCAKAED 660 (783)
Q Consensus 637 e~Ak~Na~~ngl~n--v~f~~gDaed 660 (783)
+.|++++..+++.+ ++++++|+.+
T Consensus 88 ~~a~~~~~~~~~~~~~~~~~~~d~~~ 113 (194)
T 1dus_A 88 KLAKENIKLNNLDNYDIRVVHSDLYE 113 (194)
T ss_dssp HHHHHHHHHTTCTTSCEEEEECSTTT
T ss_pred HHHHHHHHHcCCCccceEEEECchhc
Confidence 99999999999987 9999999764
No 213
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.12 E-value=1.7e-10 Score=118.10 Aligned_cols=79 Identities=13% Similarity=0.106 Sum_probs=69.4
Q ss_pred CccccEEEeCCCc-ccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 003969 163 DVELSKCLVHLPR-KWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (783)
Q Consensus 163 ~~~~~i~V~nLp~-~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr 240 (783)
.+..+|||+|||+ .+++++|+++|+++| |..+++++.+ +|||||+|.+.++|++||+.|||..+.|+.|+|..+.++
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 3456899999999 999999999999996 6666665543 799999999999999999999999999999999998766
Q ss_pred Cc
Q 003969 241 SF 242 (783)
Q Consensus 241 ~~ 242 (783)
..
T Consensus 111 ~~ 112 (229)
T 2adc_A 111 NV 112 (229)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 214
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=99.11 E-value=9.9e-11 Score=122.95 Aligned_cols=69 Identities=19% Similarity=0.218 Sum_probs=62.0
Q ss_pred cCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCH-------HHHHHHHHHHHHcCCCc-EEEEEccHHHHHHHHH
Q 003969 598 DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNA-------SAVSDAHRNAEINGIKN-CRFVCAKAEDVMGSLL 666 (783)
Q Consensus 598 ~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~-------~AIe~Ak~Na~~ngl~n-v~f~~gDaed~l~~l~ 666 (783)
...++.+|||+|||+|.+++.||+.+.+|+|||+++ .+++.|++|++.|++.+ ++|+++|+.++++.+.
T Consensus 80 ~~~~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~ 156 (258)
T 2r6z_A 80 NHTAHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALV 156 (258)
T ss_dssp TGGGCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHH
T ss_pred CcCCcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhh
Confidence 344568999999999999999999988999999999 99999999999999865 9999999999877553
No 215
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.11 E-value=1.5e-10 Score=111.73 Aligned_cols=74 Identities=11% Similarity=0.161 Sum_probs=65.4
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCccC---CceeEEEe
Q 003969 164 VELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIG---NKTLKVAN 236 (783)
Q Consensus 164 ~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~---Gr~L~V~~ 236 (783)
...+|||+|||+.+++++|+++|+++| |....+.+ ++++|||||+|.+.++|.+|++.|||..+. |+.|+|..
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 456899999999999999999999995 66667665 567899999999999999999999998776 49999987
Q ss_pred c
Q 003969 237 V 237 (783)
Q Consensus 237 A 237 (783)
|
T Consensus 174 a 174 (175)
T 3nmr_A 174 A 174 (175)
T ss_dssp C
T ss_pred c
Confidence 6
No 216
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=99.10 E-value=2.8e-10 Score=113.11 Aligned_cols=78 Identities=14% Similarity=0.123 Sum_probs=64.6
Q ss_pred ccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEE
Q 003969 577 AFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIKNCRFVC 655 (783)
Q Consensus 577 sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~ 655 (783)
.+|+++...+..++..+... ...++.+|||+|||+|.+++.+++.. .+|+|||+++.+++.|++|+. +++|++
T Consensus 28 ~~~~~~~~~~~~l~~~~~~~-~~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~-----~~~~~~ 101 (200)
T 1ne2_A 28 EQYPTDASTAAYFLIEIYND-GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-----GVNFMV 101 (200)
T ss_dssp --CCCCHHHHHHHHHHHHHH-TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-----TSEEEE
T ss_pred eecCCCHHHHHHHHHHHHhc-CCCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC-----CCEEEE
Confidence 45778888888888666554 44567899999999999999999884 589999999999999999975 688999
Q ss_pred ccHHH
Q 003969 656 AKAED 660 (783)
Q Consensus 656 gDaed 660 (783)
+|+.+
T Consensus 102 ~d~~~ 106 (200)
T 1ne2_A 102 ADVSE 106 (200)
T ss_dssp CCGGG
T ss_pred CcHHH
Confidence 99775
No 217
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.10 E-value=1.9e-10 Score=104.64 Aligned_cols=79 Identities=19% Similarity=0.112 Sum_probs=66.1
Q ss_pred ccccEEEeCCCc--c---cCHHHHHHHhhhcc-ceeeEeec-----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCcee
Q 003969 164 VELSKCLVHLPR--K---WHSDNLKKFLADHG-ILYKSAKK-----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTL 232 (783)
Q Consensus 164 ~~~~i~V~nLp~--~---~~~~~Lkklf~~~~-v~~~~i~~-----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L 232 (783)
+.--|+|+||.. . -.+++|++.|++|| |..+.|.+ ++++|||||+|.+.++|++||+.|||..|.||.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 344599999963 2 25899999999996 77777765 3678999999999999999999999999999999
Q ss_pred EEEecCCCCc
Q 003969 233 KVANVVPRSF 242 (783)
Q Consensus 233 ~V~~A~pr~~ 242 (783)
+|..|.+..+
T Consensus 87 ~v~~a~~~~f 96 (105)
T 2pe8_A 87 KACFYNLDKF 96 (105)
T ss_dssp EEEECCHHHH
T ss_pred EEEEcCHHHh
Confidence 9999865443
No 218
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=99.10 E-value=4.7e-10 Score=116.68 Aligned_cols=90 Identities=24% Similarity=0.412 Sum_probs=70.4
Q ss_pred CCeEEEECCCccccCCHHHHHHHHHHHhhhccCC-CCCeEEEecCCcCHHHHHHhhhCC-EEEEEeCCHHHHHHHHHHHH
Q 003969 567 SNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLG-PDTLLFDVCCGTGTIGLTLAHRVG-MVIGIEMNASAVSDAHRNAE 644 (783)
Q Consensus 567 ~gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~-~g~~VLDLgCGtGti~l~LA~~~~-~VigVE~s~~AIe~Ak~Na~ 644 (783)
.++.+.-.+..| ...... .| +..++... ++.+|||+|||+|.+++.|++... +|+|||+++.+++.|++|+.
T Consensus 20 ~~~~i~q~~~~~-~~~~d~--~l---l~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~ 93 (259)
T 3lpm_A 20 ENLRIIQSPSVF-SFSIDA--VL---LAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVA 93 (259)
T ss_dssp TTEEEEEBTTTB-CCCHHH--HH---HHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCc-cCcHHH--HH---HHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHH
Confidence 345555555544 445442 22 33445666 788999999999999999999865 99999999999999999999
Q ss_pred HcCCC-cEEEEEccHHHHH
Q 003969 645 INGIK-NCRFVCAKAEDVM 662 (783)
Q Consensus 645 ~ngl~-nv~f~~gDaed~l 662 (783)
.+++. +++++++|+.++.
T Consensus 94 ~~~~~~~v~~~~~D~~~~~ 112 (259)
T 3lpm_A 94 YNQLEDQIEIIEYDLKKIT 112 (259)
T ss_dssp HTTCTTTEEEECSCGGGGG
T ss_pred HCCCcccEEEEECcHHHhh
Confidence 99996 6999999988643
No 219
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=99.10 E-value=3.7e-10 Score=118.94 Aligned_cols=69 Identities=17% Similarity=0.310 Sum_probs=61.6
Q ss_pred hccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHH
Q 003969 596 WADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664 (783)
Q Consensus 596 ~l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~~ 664 (783)
++.+.++.+|||+|||+|.+++.|+... .+|+|+|+++.+++.|++|++.+|+.++.++++|+.++...
T Consensus 78 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~ 149 (274)
T 3ajd_A 78 VLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDY 149 (274)
T ss_dssp HHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHH
T ss_pred HhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchh
Confidence 3456678999999999999999999852 79999999999999999999999999999999999886543
No 220
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.09 E-value=2.5e-10 Score=109.47 Aligned_cols=76 Identities=21% Similarity=0.345 Sum_probs=66.8
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCC--ceeEE
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGN--KTLKV 234 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~G--r~L~V 234 (783)
..+...|||+|||..+++++|+++|+++| |....+.. ++++|||||+|.+.++|.+|++.|||..+.| +.|+|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 34567899999999999999999999995 66666665 4567999999999999999999999999988 99999
Q ss_pred Eec
Q 003969 235 ANV 237 (783)
Q Consensus 235 ~~A 237 (783)
..|
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 765
No 221
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.09 E-value=1.3e-10 Score=116.73 Aligned_cols=74 Identities=24% Similarity=0.253 Sum_probs=64.9
Q ss_pred ccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCC
Q 003969 166 LSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPR 240 (783)
Q Consensus 166 ~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr 240 (783)
..|||+|||+.+++++|+++|+++| |..+++.+ ++++|||||+|.++++|++||+.++ ..|+||.|+|..++.-
T Consensus 110 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 110 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDDY 187 (193)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTTC
T ss_pred CEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHHH
Confidence 4699999999999999999999996 77777765 6778999999999999999998775 4899999999876543
No 222
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=99.08 E-value=2.5e-10 Score=126.43 Aligned_cols=92 Identities=20% Similarity=0.237 Sum_probs=77.6
Q ss_pred CeEEEECCCccccCCH-HHHHHHHHHHhhhcc--CCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHH
Q 003969 568 NLRFCISPTAFFQVNT-LAAEKLYSLGGDWAD--LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAE 644 (783)
Q Consensus 568 gl~f~isp~sFfQvN~-~~ae~L~~~i~~~l~--~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~ 644 (783)
+++|...|+.|++.+. ...+.|...+...+. ..++.+|||+|||+|.+++.+++...+|+|||+++.|++.|++|+.
T Consensus 197 ~~~~~~~pgvFs~~~~d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~ 276 (381)
T 3dmg_A 197 EYTFHHLPGVFSAGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLE 276 (381)
T ss_dssp EEEEEECTTCTTTTSCCHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHH
T ss_pred eEEEEeCCCceeCCCCCHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHH
Confidence 4678889999998754 456667777766552 3467899999999999999999998899999999999999999999
Q ss_pred HcCCCcEEEEEccHHH
Q 003969 645 INGIKNCRFVCAKAED 660 (783)
Q Consensus 645 ~ngl~nv~f~~gDaed 660 (783)
.+++. ++|+++|+.+
T Consensus 277 ~~~~~-v~~~~~D~~~ 291 (381)
T 3dmg_A 277 ANALK-AQALHSDVDE 291 (381)
T ss_dssp HTTCC-CEEEECSTTT
T ss_pred HcCCC-eEEEEcchhh
Confidence 99985 8999999764
No 223
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=99.08 E-value=3.5e-10 Score=127.84 Aligned_cols=69 Identities=19% Similarity=0.269 Sum_probs=61.8
Q ss_pred hhccCCCCCeEEEecCCcCHHHHHHhhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHH
Q 003969 595 DWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMG 663 (783)
Q Consensus 595 ~~l~~~~g~~VLDLgCGtGti~l~LA~~---~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~ 663 (783)
.++.+.++.+|||+|||+|..++.||.. ..+|+|+|+++.+++.+++|++.+|+.|+.++++|+.++..
T Consensus 99 ~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~ 170 (456)
T 3m4x_A 99 TAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVP 170 (456)
T ss_dssp HHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHH
T ss_pred HHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhh
Confidence 3445678899999999999999999986 36999999999999999999999999999999999988654
No 224
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.08 E-value=1.7e-10 Score=111.35 Aligned_cols=74 Identities=14% Similarity=0.321 Sum_probs=63.9
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeecc------CCccEEEEEeCCHHHHHHHHHHHcCCccC---CceeEE
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKK------KGMTVGFVKFESVEQLKNAVEELEGISIG---NKTLKV 234 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~------r~~gfgFVtF~s~Eea~kAIe~LnG~~~~---Gr~L~V 234 (783)
..+|||+|||+.+++++|+++|+++| |...++++. +++|||||+|.+.++|++|++.|||..+. ++.+.+
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~ 82 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQM 82 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEE
Confidence 45799999999999999999999995 666776662 67899999999999999999999998876 567777
Q ss_pred EecC
Q 003969 235 ANVV 238 (783)
Q Consensus 235 ~~A~ 238 (783)
..+.
T Consensus 83 ~~~~ 86 (175)
T 3nmr_A 83 KPAD 86 (175)
T ss_dssp EECG
T ss_pred cccc
Confidence 6654
No 225
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.08 E-value=1.9e-10 Score=114.20 Aligned_cols=75 Identities=13% Similarity=0.123 Sum_probs=67.1
Q ss_pred ccEEEeCCCc-ccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCC
Q 003969 166 LSKCLVHLPR-KWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRS 241 (783)
Q Consensus 166 ~~i~V~nLp~-~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr~ 241 (783)
.+|||+|||+ .+++++|+++|+++| |..+++...+ +|||||+|.+.++|++||+.|||..+.|+.|+|..+.++.
T Consensus 4 ~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 4 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp CEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence 5799999999 999999999999996 6666655543 7999999999999999999999999999999999887664
No 226
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=99.07 E-value=4.1e-10 Score=112.24 Aligned_cols=70 Identities=17% Similarity=0.241 Sum_probs=62.9
Q ss_pred HHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 591 SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 591 ~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
..++..+.+.++.+|||+|||+|.+++.+++.. .+|+|||+++.+++.|++|+..+++.+++++++|+.+
T Consensus 30 ~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 101 (204)
T 3e05_A 30 AVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPE 101 (204)
T ss_dssp HHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTT
T ss_pred HHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhh
Confidence 445566677788999999999999999999987 7999999999999999999999999889999999764
No 227
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.06 E-value=1.7e-10 Score=121.60 Aligned_cols=78 Identities=14% Similarity=0.190 Sum_probs=69.6
Q ss_pred CccccEEEeCCCcc-cCHHHHHHHhhhcc-ceeeEeec-----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEE
Q 003969 163 DVELSKCLVHLPRK-WHSDNLKKFLADHG-ILYKSAKK-----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVA 235 (783)
Q Consensus 163 ~~~~~i~V~nLp~~-~~~~~Lkklf~~~~-v~~~~i~~-----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~ 235 (783)
.....|||+|||+. +++++|+++|++|| |..+++.+ ++++|||||+|.+.++|.+|+ .|||..+.|+.|+|.
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~ 286 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVS 286 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEE
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEE
Confidence 34568999999999 99999999999995 66777665 566899999999999999999 999999999999999
Q ss_pred ecCCCC
Q 003969 236 NVVPRS 241 (783)
Q Consensus 236 ~A~pr~ 241 (783)
.|+||+
T Consensus 287 ~a~~k~ 292 (292)
T 2ghp_A 287 LADKKP 292 (292)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 998874
No 228
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=99.06 E-value=5.1e-10 Score=120.54 Aligned_cols=66 Identities=17% Similarity=0.285 Sum_probs=59.5
Q ss_pred hhccCCCCCeEEEecCCcCHHHHHHhhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 595 DWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 595 ~~l~~~~g~~VLDLgCGtGti~l~LA~~---~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
.++.+.++.+|||+|||+|..++.|+.. ..+|+|+|+++.+++.+++|++.+|+.|++++++|+.+
T Consensus 96 ~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~ 164 (309)
T 2b9e_A 96 MLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLA 164 (309)
T ss_dssp HHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGG
T ss_pred HHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHh
Confidence 3445678899999999999999999986 26999999999999999999999999999999999865
No 229
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=99.06 E-value=5.3e-10 Score=123.46 Aligned_cols=90 Identities=21% Similarity=0.293 Sum_probs=75.5
Q ss_pred CeEEEECCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHH
Q 003969 568 NLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEI 645 (783)
Q Consensus 568 gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~ 645 (783)
+++|...|+.|.+.+......+ +++++....+.+|||+|||+|.+++.+++. ..+|+|||+++.|++.|++|+..
T Consensus 192 ~~~~~~~pg~Fs~~~~d~~~~~---ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ 268 (375)
T 4dcm_A 192 DWTIHNHANVFSRTGLDIGARF---FMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVET 268 (375)
T ss_dssp TEEEEECTTCTTCSSCCHHHHH---HHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred ceEEEeCCCcccCCcccHHHHH---HHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHH
Confidence 6788889999999765544433 345555556689999999999999999998 47999999999999999999999
Q ss_pred cCCC---cEEEEEccHHH
Q 003969 646 NGIK---NCRFVCAKAED 660 (783)
Q Consensus 646 ngl~---nv~f~~gDaed 660 (783)
|++. +++|+++|+.+
T Consensus 269 ngl~~~~~v~~~~~D~~~ 286 (375)
T 4dcm_A 269 NMPEALDRCEFMINNALS 286 (375)
T ss_dssp HCGGGGGGEEEEECSTTT
T ss_pred cCCCcCceEEEEechhhc
Confidence 9985 59999999764
No 230
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=99.05 E-value=2.6e-10 Score=115.57 Aligned_cols=87 Identities=20% Similarity=0.240 Sum_probs=70.8
Q ss_pred eCCeEEEECCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCC-cCHHHHHHhhh-CCEEEEEeCCHHHHHHHHHHH
Q 003969 566 ISNLRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCG-TGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNA 643 (783)
Q Consensus 566 i~gl~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCG-tGti~l~LA~~-~~~VigVE~s~~AIe~Ak~Na 643 (783)
+.+..|.+.+..|+. +...+.++ +... +.++.+|||+||| +|.+++.+++. ..+|+|+|+++.+++.|++|+
T Consensus 26 ~~~~~~~~~~~~~~p--~~~~~~l~--~~~~--~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~ 99 (230)
T 3evz_A 26 LFGLDIEYHPKGLVT--TPISRYIF--LKTF--LRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNI 99 (230)
T ss_dssp HHCCCCCCCTTSCCC--CHHHHHHH--HHTT--CCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHH
T ss_pred hcCCceecCCCeEeC--CCchhhhH--hHhh--cCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHH
Confidence 456678888888864 33344442 2222 3467899999999 99999999998 789999999999999999999
Q ss_pred HHcCCCcEEEEEccHH
Q 003969 644 EINGIKNCRFVCAKAE 659 (783)
Q Consensus 644 ~~ngl~nv~f~~gDae 659 (783)
..+++ +++++++|+.
T Consensus 100 ~~~~~-~v~~~~~d~~ 114 (230)
T 3evz_A 100 ERNNS-NVRLVKSNGG 114 (230)
T ss_dssp HHTTC-CCEEEECSSC
T ss_pred HHhCC-CcEEEeCCch
Confidence 99999 8999999964
No 231
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.05 E-value=4.4e-10 Score=115.03 Aligned_cols=78 Identities=22% Similarity=0.321 Sum_probs=67.6
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhccceeeEeec-cCCccEEEEEeCCHHHHHHHHHHHcCCccC-CceeEEEecCCC
Q 003969 163 DVELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKK-KKGMTVGFVKFESVEQLKNAVEELEGISIG-NKTLKVANVVPR 240 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~~~~~Lkklf~~~~v~~~~i~~-~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~-Gr~L~V~~A~pr 240 (783)
.+...|||+|||+.+++++|+++|+++|+....+.. .+++|||||+|.+.++|.+||+.|||..+. |+.|+|..|+|+
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 345789999999999999999999999843333333 457899999999999999999999999999 999999998764
No 232
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=3.5e-11 Score=100.22 Aligned_cols=37 Identities=35% Similarity=0.740 Sum_probs=32.8
Q ss_pred CCCCCcccccccccccccccCCCCCCCccccCcCccCC
Q 003969 75 PSLHPLHKTSLCSYFRKVGTCCHGSTCRYAHGEEELRI 112 (783)
Q Consensus 75 ~~~~~~~kt~~c~~~~~~~~c~~g~~c~~ahg~~elr~ 112 (783)
..+.+..|++||++| ..|.|+||++|+||||++|||.
T Consensus 12 ~~R~P~~k~~LC~~~-~~G~C~~G~~C~FAHG~~ELr~ 48 (69)
T 2d9m_A 12 QHRFPTGYFSICDRY-MNGTCPEGNSCKFAHGNAELHE 48 (69)
T ss_dssp CCCCCCSCCSBCHHH-HHSCCSSCSSCSSBSSHHHHHH
T ss_pred cccCCCCCcccCccc-CcCCCCCCCccCCcCCHHHHhh
Confidence 445667788999999 5689999999999999999997
No 233
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.05 E-value=4.7e-10 Score=117.17 Aligned_cols=76 Identities=17% Similarity=0.255 Sum_probs=67.4
Q ss_pred CCccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 003969 162 QDVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~p 239 (783)
.....+|||+|||+.+++++|+++|+++| |..+.+ .+++|||||+|.+.++|++||+.|||..+.|+.|+|..+.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i--~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFI--NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEE--ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE--eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 44566899999999999999999999996 555444 56789999999999999999999999999999999998854
No 234
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.05 E-value=4.3e-10 Score=107.41 Aligned_cols=74 Identities=19% Similarity=0.332 Sum_probs=64.6
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCce--eEEEe
Q 003969 164 VELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKT--LKVAN 236 (783)
Q Consensus 164 ~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~--L~V~~ 236 (783)
...+|||+|||+.+++++|+++|+++| |...++.. ++++|||||+|.+.++|.+|++.|||..+.|+. |+|..
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 456799999999999999999999996 66666654 456899999999999999999999999999975 77765
Q ss_pred c
Q 003969 237 V 237 (783)
Q Consensus 237 A 237 (783)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 235
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=99.04 E-value=2.4e-10 Score=125.92 Aligned_cols=72 Identities=28% Similarity=0.329 Sum_probs=61.8
Q ss_pred HHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCC--EEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHHH
Q 003969 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG--MVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAEDV 661 (783)
Q Consensus 589 L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~--~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gDaed~ 661 (783)
+...++.++ ..++.+|||+|||+|++++.++..+. +|+|+|+++.|++.|++|+..+|+ .+++|+++|+.++
T Consensus 206 la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~ 280 (373)
T 3tm4_A 206 IANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQL 280 (373)
T ss_dssp HHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGG
T ss_pred HHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhC
Confidence 333344444 55788999999999999999999876 999999999999999999999999 6799999998763
No 236
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=99.04 E-value=2.1e-10 Score=117.09 Aligned_cols=65 Identities=15% Similarity=0.148 Sum_probs=57.6
Q ss_pred hhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 594 GDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 594 ~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
++.+.+.++.+|||+|||+|++++.|++.+ .+|+|||+++.+++.|++|++.+ .|+.++++|+.+
T Consensus 67 l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~ 133 (230)
T 1fbn_A 67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANK 133 (230)
T ss_dssp CCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTC
T ss_pred ccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC--CCeEEEECCCCC
Confidence 555566778899999999999999999986 79999999999999999998765 689999999865
No 237
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=99.04 E-value=7.4e-10 Score=120.73 Aligned_cols=73 Identities=26% Similarity=0.291 Sum_probs=64.3
Q ss_pred HHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 589 L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
+...++.++...++..|||+|||+|++++.++..+ .+|+|+|+++.+++.|++|++.+|+.+++|+++|+.++
T Consensus 191 la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~ 266 (354)
T 3tma_A 191 LAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHL 266 (354)
T ss_dssp HHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGG
T ss_pred HHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhC
Confidence 44445556666778899999999999999999976 79999999999999999999999998999999998864
No 238
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.03 E-value=4e-10 Score=118.32 Aligned_cols=80 Identities=19% Similarity=0.271 Sum_probs=71.7
Q ss_pred CccccEEEeCCCccc-CHHHHHHHhhhcc-ceeeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 163 DVELSKCLVHLPRKW-HSDNLKKFLADHG-ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~-~~~~Lkklf~~~~-v~~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
.....|||+|||+.+ ++++|+++|++|| |..+++.+ ++++|||||+|.+.++|.+|++.|||..+.|+.|+|..|
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 261 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFC 261 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEe
Confidence 345679999999996 9999999999996 77777766 567899999999999999999999999999999999999
Q ss_pred CCCCc
Q 003969 238 VPRSF 242 (783)
Q Consensus 238 ~pr~~ 242 (783)
.|+..
T Consensus 262 ~~~~~ 266 (284)
T 3smz_A 262 APGPP 266 (284)
T ss_dssp CSSSC
T ss_pred cCCCc
Confidence 88754
No 239
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=99.03 E-value=6.7e-10 Score=125.80 Aligned_cols=68 Identities=21% Similarity=0.251 Sum_probs=60.6
Q ss_pred hhccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHH
Q 003969 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMG 663 (783)
Q Consensus 595 ~~l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~ 663 (783)
.++.+.++.+|||+|||+|.+++.||... .+|+|+|+++.+++.|++|++.+|+. +.++++|+.++..
T Consensus 95 ~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~ 165 (464)
T 3m6w_A 95 VLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAE 165 (464)
T ss_dssp HHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHH
T ss_pred HhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhh
Confidence 34456788999999999999999999763 58999999999999999999999998 9999999988643
No 240
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.03 E-value=2.3e-10 Score=109.84 Aligned_cols=75 Identities=19% Similarity=0.306 Sum_probs=65.4
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec----cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 003969 164 VELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK----KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 164 ~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~----~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
+..+|||+|||+.+++++|+++|+++| |..+++++ ++++|||||+|.+.++|++|++ ++..+.|+.|.|..+.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 345799999999999999999999996 66677665 5788999999999999999999 4788999999998776
Q ss_pred CC
Q 003969 239 PR 240 (783)
Q Consensus 239 pr 240 (783)
++
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 54
No 241
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.02 E-value=5.1e-10 Score=117.47 Aligned_cols=73 Identities=18% Similarity=0.187 Sum_probs=65.9
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhccceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 003969 164 VELSKCLVHLPRKWHSDNLKKFLADHGILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 164 ~~~~i~V~nLp~~~~~~~Lkklf~~~~v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
+..+|||+|||+.+++++|+++|+++||..+.+ ++++|||||+|.+.++|++|++.|||..+.|+.|+|..+.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~Gi~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYELKYCFV--DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSCEEEEEE--ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCEEEEE--ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 446799999999999999999999999555544 7889999999999999999999999999999999998653
No 242
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.02 E-value=4.3e-10 Score=111.62 Aligned_cols=77 Identities=19% Similarity=0.253 Sum_probs=66.5
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhccc--eeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccC-CceeEEEecCC
Q 003969 163 DVELSKCLVHLPRKWHSDNLKKFLADHGI--LYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIG-NKTLKVANVVP 239 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~~~~~Lkklf~~~~v--~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~-Gr~L~V~~A~p 239 (783)
.+...|||+|||+.+++++|+++|+++|. ...++. ..++|||||+|.+.++|.+|++.|||..+. |+.|+|..|+|
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF-QKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEES-STTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEE-eCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 34668999999999999999999999983 333332 346899999999999999999999999999 99999998876
Q ss_pred C
Q 003969 240 R 240 (783)
Q Consensus 240 r 240 (783)
+
T Consensus 197 ~ 197 (198)
T 1qm9_A 197 T 197 (198)
T ss_dssp C
T ss_pred c
Confidence 4
No 243
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.01 E-value=7.9e-10 Score=115.92 Aligned_cols=75 Identities=19% Similarity=0.228 Sum_probs=66.9
Q ss_pred CccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccC-CceeEEEecC
Q 003969 163 DVELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIG-NKTLKVANVV 238 (783)
Q Consensus 163 ~~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~-Gr~L~V~~A~ 238 (783)
.+...|||+|||+.+++++|+++|++|| |..+++..++ +|||||+|.+.++|.+||+.|||+.+. |+.|+|..|+
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 3456799999999999999999999995 7777766543 599999999999999999999999999 9999998874
No 244
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=99.01 E-value=3.3e-10 Score=121.19 Aligned_cols=77 Identities=19% Similarity=0.275 Sum_probs=61.5
Q ss_pred cCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHH
Q 003969 580 QVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659 (783)
Q Consensus 580 QvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDae 659 (783)
-++...... +++.+.+.++.+|||+|||+|.++..|++.+.+|+|||+++.+++.|++|+..+++.+++++++|+.
T Consensus 25 l~~~~i~~~----i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~ 100 (299)
T 2h1r_A 25 LKNPGILDK----IIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAI 100 (299)
T ss_dssp ECCHHHHHH----HHHHHCCCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CC
T ss_pred ecCHHHHHH----HHHhcCCCCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchh
Confidence 345554444 4455566778899999999999999999998999999999999999999999888888999999865
Q ss_pred H
Q 003969 660 D 660 (783)
Q Consensus 660 d 660 (783)
+
T Consensus 101 ~ 101 (299)
T 2h1r_A 101 K 101 (299)
T ss_dssp S
T ss_pred h
Confidence 3
No 245
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=99.00 E-value=3.7e-09 Score=106.67 Aligned_cols=88 Identities=18% Similarity=0.174 Sum_probs=72.4
Q ss_pred CCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCc-
Q 003969 575 PTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIKN- 650 (783)
Q Consensus 575 p~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~---~~~VigVE~s~~AIe~Ak~Na~~ngl~n- 650 (783)
+-.++++.+.....+...+. . .++.+|||+|||+|.+++.|++. ..+|++||+++.+++.|+++++.+++.+
T Consensus 42 ~~~~~~~~~~~~~~l~~l~~-~---~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ 117 (225)
T 3tr6_A 42 STYAMQTAPEQAQLLALLVK-L---MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDK 117 (225)
T ss_dssp TTGGGSCCHHHHHHHHHHHH-H---HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTT
T ss_pred CCCccccCHHHHHHHHHHHH-h---hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCc
Confidence 34557777777666654432 2 25679999999999999999987 5799999999999999999999999964
Q ss_pred EEEEEccHHHHHHHHH
Q 003969 651 CRFVCAKAEDVMGSLL 666 (783)
Q Consensus 651 v~f~~gDaed~l~~l~ 666 (783)
++|+++|+.+.++.+.
T Consensus 118 v~~~~~d~~~~~~~~~ 133 (225)
T 3tr6_A 118 IGLRLSPAKDTLAELI 133 (225)
T ss_dssp EEEEESCHHHHHHHHH
T ss_pred eEEEeCCHHHHHHHhh
Confidence 9999999998876553
No 246
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=98.99 E-value=1.4e-09 Score=109.47 Aligned_cols=60 Identities=22% Similarity=0.295 Sum_probs=56.1
Q ss_pred CCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
++.+|||||||+|.+++.+++.. .+|+|||+++.+++.|++|+..+++.|+.|+++|+.+
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~ 102 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSD 102 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHH
Confidence 46799999999999999999884 6999999999999999999999999999999999876
No 247
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.99 E-value=1.9e-10 Score=104.44 Aligned_cols=68 Identities=13% Similarity=0.101 Sum_probs=57.6
Q ss_pred EeCCCcccCHHHHHHHh------------hhcc-ceeeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeE
Q 003969 170 LVHLPRKWHSDNLKKFL------------ADHG-ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLK 233 (783)
Q Consensus 170 V~nLp~~~~~~~Lkklf------------~~~~-v~~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~ 233 (783)
+.|||+.+++++|++.| ++|| |..+.|.+ ++++|||||+|.++++|++||+.|||..+.||+|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56788888887777666 9996 77777776 46799999999999999999999999999999999
Q ss_pred EEec
Q 003969 234 VANV 237 (783)
Q Consensus 234 V~~A 237 (783)
|..+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 8754
No 248
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=98.97 E-value=7.8e-10 Score=118.84 Aligned_cols=87 Identities=24% Similarity=0.388 Sum_probs=75.0
Q ss_pred EECCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCC---EEEEEeCCHHHHHHHHHHHHHcCC
Q 003969 572 CISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG---MVIGIEMNASAVSDAHRNAEINGI 648 (783)
Q Consensus 572 ~isp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~---~VigVE~s~~AIe~Ak~Na~~ngl 648 (783)
.+.+..|||.+. ...++..+++.+.+.++.+|||+|||+|.+++.|++.+. +|+|||+++.+++.|++|+..+|+
T Consensus 48 ~l~~~~f~q~~~--~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~ 125 (317)
T 1dl5_A 48 SYDDGEEYSTSS--QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI 125 (317)
T ss_dssp EEECSSCEEEEC--CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred cccCCCcceecc--CHHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 667888999764 344556677777778899999999999999999998754 499999999999999999999999
Q ss_pred CcEEEEEccHHH
Q 003969 649 KNCRFVCAKAED 660 (783)
Q Consensus 649 ~nv~f~~gDaed 660 (783)
.+++|+++|+.+
T Consensus 126 ~~v~~~~~d~~~ 137 (317)
T 1dl5_A 126 ENVIFVCGDGYY 137 (317)
T ss_dssp CSEEEEESCGGG
T ss_pred CCeEEEECChhh
Confidence 889999999875
No 249
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=98.97 E-value=7.6e-10 Score=112.92 Aligned_cols=77 Identities=18% Similarity=0.173 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHH--hhhccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEc
Q 003969 582 NTLAAEKLYSLG--GDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCA 656 (783)
Q Consensus 582 N~~~ae~L~~~i--~~~l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~g 656 (783)
|+.....++..+ ++.+.+.++.+|||+|||+|.+++.|++.. .+|+|||+++.|++.+.++++.+ .+++|+++
T Consensus 56 ~~~~~~~~~~~~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--~~v~~~~~ 133 (233)
T 2ipx_A 56 NPFRSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--TNIIPVIE 133 (233)
T ss_dssp CTTTCHHHHHHHTTCSCCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--TTEEEECS
T ss_pred cccchhHHHHHHhHHheecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--CCeEEEEc
Confidence 443444444333 445566778899999999999999999873 79999999999999999999876 68999999
Q ss_pred cHHH
Q 003969 657 KAED 660 (783)
Q Consensus 657 Daed 660 (783)
|+.+
T Consensus 134 d~~~ 137 (233)
T 2ipx_A 134 DARH 137 (233)
T ss_dssp CTTC
T ss_pred ccCC
Confidence 9875
No 250
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=98.96 E-value=2.4e-09 Score=103.98 Aligned_cols=76 Identities=30% Similarity=0.426 Sum_probs=66.5
Q ss_pred HHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHHHH
Q 003969 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAEDVM 662 (783)
Q Consensus 587 e~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gDaed~l 662 (783)
+.+...++..+...++.+|||+|||+|.+++.+++...+|+|+|+++.+++.|++|+..+++ .++.++++|+.+.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 95 (192)
T 1l3i_A 19 MEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEAL 95 (192)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHH
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhc
Confidence 34455566666777889999999999999999999889999999999999999999999998 78999999988743
No 251
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=98.96 E-value=1.5e-09 Score=116.83 Aligned_cols=67 Identities=15% Similarity=0.246 Sum_probs=59.9
Q ss_pred hhccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 595 ~~l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
.++.+.++.+|||+|||+|.+++.|+... .+|+|+|+++.+++.|++|++.+|+.|++++++|+.++
T Consensus 112 ~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~ 181 (315)
T 1ixk_A 112 VALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHI 181 (315)
T ss_dssp HHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGG
T ss_pred HHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhc
Confidence 34456788999999999999999999864 68999999999999999999999999999999998753
No 252
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=98.96 E-value=1.3e-09 Score=106.61 Aligned_cols=62 Identities=19% Similarity=0.284 Sum_probs=57.6
Q ss_pred CCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 599 LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 599 ~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
+.++.+|||+|||+|.+++.|++.+.+|+|||+++.|++.|++|++.+++.+++|+++++.+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~ 81 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHEN 81 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGG
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHH
Confidence 34688999999999999999999989999999999999999999999999899999988765
No 253
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.95 E-value=8.7e-10 Score=111.66 Aligned_cols=67 Identities=10% Similarity=0.111 Sum_probs=58.6
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc-c--eeeEeec--cCCccEEEEEeCCHHHHHHHHHHHcCCccCCc
Q 003969 164 VELSKCLVHLPRKWHSDNLKKFLADHG-I--LYKSAKK--KKGMTVGFVKFESVEQLKNAVEELEGISIGNK 230 (783)
Q Consensus 164 ~~~~i~V~nLp~~~~~~~Lkklf~~~~-v--~~~~i~~--~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr 230 (783)
+...|||+|||+.+++++|+++|+++| | ..+++.. ++++|||||+|.+.++|.+||+.|||+.+.|+
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 445799999999999999999999996 5 4555554 34569999999999999999999999999997
No 254
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=98.95 E-value=2.9e-09 Score=108.57 Aligned_cols=64 Identities=22% Similarity=0.400 Sum_probs=59.2
Q ss_pred CCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~~ 664 (783)
.+.+|||||||+|.+++.+|+.. ..|+|||+++.+++.|++|+..+++.|++|+++|+.++++.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~ 99 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHK 99 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHH
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHH
Confidence 46799999999999999999875 57999999999999999999999999999999999998764
No 255
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=98.94 E-value=9.4e-09 Score=103.66 Aligned_cols=84 Identities=17% Similarity=0.139 Sum_probs=68.6
Q ss_pred ccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCc-EEEE
Q 003969 579 FQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIKN-CRFV 654 (783)
Q Consensus 579 fQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~---~~~VigVE~s~~AIe~Ak~Na~~ngl~n-v~f~ 654 (783)
+++.+.....|...+ . ..++.+|||||||+|.+++.|++. ..+|+|||+++.+++.|++|+..+++.+ ++++
T Consensus 40 ~~~~~~~~~~l~~l~-~---~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~ 115 (223)
T 3duw_A 40 HDVSPTQGKFLQLLV-Q---IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVR 115 (223)
T ss_dssp CSCCHHHHHHHHHHH-H---HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred cccCHHHHHHHHHHH-H---hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 455666655544332 2 235689999999999999999998 5799999999999999999999999965 9999
Q ss_pred EccHHHHHHHHH
Q 003969 655 CAKAEDVMGSLL 666 (783)
Q Consensus 655 ~gDaed~l~~l~ 666 (783)
++|+.+.++.+.
T Consensus 116 ~~d~~~~~~~~~ 127 (223)
T 3duw_A 116 TGLALDSLQQIE 127 (223)
T ss_dssp ESCHHHHHHHHH
T ss_pred EcCHHHHHHHHH
Confidence 999998877654
No 256
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=98.93 E-value=8.4e-10 Score=115.90 Aligned_cols=86 Identities=19% Similarity=0.171 Sum_probs=63.9
Q ss_pred CCccccCCHHHHHHHHH----HHhhhccCCCCCeEEEecCCcCHHHHHHhhh---CCEEEEEeCCHHHHHHHHHHHHHc-
Q 003969 575 PTAFFQVNTLAAEKLYS----LGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEIN- 646 (783)
Q Consensus 575 p~sFfQvN~~~ae~L~~----~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~---~~~VigVE~s~~AIe~Ak~Na~~n- 646 (783)
+..|++.+......++. .++.++.+.++.+|||+|||+|.+++.|++. ..+|+|+|+++.+++.|++|+..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~ 159 (275)
T 1yb2_A 80 PMYFGRVIRRNTQIISEIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY 159 (275)
T ss_dssp GGGHHHHC------------------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS
T ss_pred HHHHHhhccccccccChhhHHHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcC
Confidence 34566665555555554 6667777788899999999999999999987 579999999999999999999988
Q ss_pred CCCcEEEEEccHHH
Q 003969 647 GIKNCRFVCAKAED 660 (783)
Q Consensus 647 gl~nv~f~~gDaed 660 (783)
|+.+++|+++|+.+
T Consensus 160 g~~~v~~~~~d~~~ 173 (275)
T 1yb2_A 160 DIGNVRTSRSDIAD 173 (275)
T ss_dssp CCTTEEEECSCTTT
T ss_pred CCCcEEEEECchhc
Confidence 88899999999865
No 257
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=98.93 E-value=2e-09 Score=112.44 Aligned_cols=71 Identities=17% Similarity=0.167 Sum_probs=62.1
Q ss_pred hhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHH---cCCC-cEEEEEccHHHHHHH
Q 003969 594 GDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEI---NGIK-NCRFVCAKAEDVMGS 664 (783)
Q Consensus 594 ~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~---ngl~-nv~f~~gDaed~l~~ 664 (783)
..++...++.+|||||||+|.+++.|+++. .+|+|||+++.+++.|++|+.. +++. +++++++|+.+++..
T Consensus 29 ~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~ 105 (260)
T 2ozv_A 29 ASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKA 105 (260)
T ss_dssp HHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHH
T ss_pred HHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhh
Confidence 445556678899999999999999999985 6999999999999999999998 8886 599999999887543
No 258
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=98.93 E-value=2.1e-09 Score=122.36 Aligned_cols=61 Identities=23% Similarity=0.317 Sum_probs=57.2
Q ss_pred CCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
++.+|||+|||+|..++.||... .+|+|+|+++.+++.|++|++.+|+.|+.++++|+.++
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~ 180 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVF 180 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTH
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHh
Confidence 78899999999999999999874 69999999999999999999999999999999998764
No 259
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=98.92 E-value=3.3e-09 Score=108.55 Aligned_cols=64 Identities=16% Similarity=0.163 Sum_probs=58.3
Q ss_pred CCCCeEEEecCCcCHHHHHHhh--hCCEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHHHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAH--RVGMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAEDVMG 663 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~--~~~~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~~gDaed~l~ 663 (783)
.++.+|||+|||+|.+++.|++ ...+|+|||+++.+++.|++|++.+++. +++|+++|+.+.++
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 136 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFE 136 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHH
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHH
Confidence 3568999999999999999999 4579999999999999999999999995 89999999988765
No 260
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.92 E-value=1.9e-09 Score=113.55 Aligned_cols=78 Identities=21% Similarity=0.325 Sum_probs=66.2
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc--ceeeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecC
Q 003969 164 VELSKCLVHLPRKWHSDNLKKFLADHG--ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVV 238 (783)
Q Consensus 164 ~~~~i~V~nLp~~~~~~~Lkklf~~~~--v~~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~ 238 (783)
...+|||+|||+.+++++|+++|+++| |..+.+.. ++++|||||+|.+.++|.+|++.|||..+.|+.|+|..|.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 466899999999999999999999997 45555544 4688999999999999999999999999999999999887
Q ss_pred CCC
Q 003969 239 PRS 241 (783)
Q Consensus 239 pr~ 241 (783)
|+.
T Consensus 196 ~~~ 198 (292)
T 2ghp_A 196 PLE 198 (292)
T ss_dssp CC-
T ss_pred CCc
Confidence 653
No 261
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=98.92 E-value=9.4e-09 Score=103.95 Aligned_cols=87 Identities=18% Similarity=0.058 Sum_probs=71.6
Q ss_pred CccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh---CCEEEEEeCCHHHHHHHHHHHHHcCC-CcE
Q 003969 576 TAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGI-KNC 651 (783)
Q Consensus 576 ~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~---~~~VigVE~s~~AIe~Ak~Na~~ngl-~nv 651 (783)
..+++++......|.. +.. ..++.+|||+|||+|.+++.+++. ..+|++||+++.+++.|++|+..+|+ .++
T Consensus 48 ~~~~~~~~~~~~~l~~-l~~---~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i 123 (229)
T 2avd_A 48 QGDSMMTCEQAQLLAN-LAR---LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKI 123 (229)
T ss_dssp TGGGSCCHHHHHHHHH-HHH---HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTE
T ss_pred CCCCccCHHHHHHHHH-HHH---hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeE
Confidence 4567788877765543 222 235679999999999999999986 46999999999999999999999998 579
Q ss_pred EEEEccHHHHHHHHH
Q 003969 652 RFVCAKAEDVMGSLL 666 (783)
Q Consensus 652 ~f~~gDaed~l~~l~ 666 (783)
+|+++|+.+.++.+.
T Consensus 124 ~~~~~d~~~~~~~~~ 138 (229)
T 2avd_A 124 DLRLKPALETLDELL 138 (229)
T ss_dssp EEEESCHHHHHHHHH
T ss_pred EEEEcCHHHHHHHHH
Confidence 999999998876653
No 262
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=98.91 E-value=5.1e-09 Score=107.06 Aligned_cols=82 Identities=16% Similarity=0.188 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh---CCEEEEEeCCHHHHHHHHHHHHHcCCC--cEEEEEc
Q 003969 582 NTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIK--NCRFVCA 656 (783)
Q Consensus 582 N~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~---~~~VigVE~s~~AIe~Ak~Na~~ngl~--nv~f~~g 656 (783)
.+... .++..+.......++.+|||||||+|..++.|++. ..+|++||+++.+++.|++|++.+|+. +++|+++
T Consensus 38 ~~~~~-~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~g 116 (221)
T 3dr5_A 38 DEMTG-QLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLS 116 (221)
T ss_dssp CHHHH-HHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECS
T ss_pred CHHHH-HHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEc
Confidence 34443 44445555554444559999999999999999986 369999999999999999999999996 7999999
Q ss_pred cHHHHHHH
Q 003969 657 KAEDVMGS 664 (783)
Q Consensus 657 Daed~l~~ 664 (783)
|+.++++.
T Consensus 117 da~~~l~~ 124 (221)
T 3dr5_A 117 RPLDVMSR 124 (221)
T ss_dssp CHHHHGGG
T ss_pred CHHHHHHH
Confidence 99987654
No 263
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=98.91 E-value=2.6e-09 Score=108.28 Aligned_cols=83 Identities=18% Similarity=0.209 Sum_probs=66.4
Q ss_pred CCeEEEE-CCCccccCCHHHHHHHHHHH---hhhccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHH
Q 003969 567 SNLRFCI-SPTAFFQVNTLAAEKLYSLG---GDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDA 639 (783)
Q Consensus 567 ~gl~f~i-sp~sFfQvN~~~ae~L~~~i---~~~l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~A 639 (783)
.+..|++ .|.. ..++..+ ++.+.+.++.+|||+|||+|.+++.|++.. .+|+|||+++.|++.+
T Consensus 44 ~~~~~~~~~p~~---------~~~~~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~ 114 (227)
T 1g8a_A 44 EGEEYRIWNPNR---------SKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLREL 114 (227)
T ss_dssp TTEEEEECCTTT---------CHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHH
T ss_pred cCeEEEEeCCCc---------hhHHHHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHH
Confidence 4677766 5543 3344555 344446778899999999999999999873 7999999999999999
Q ss_pred HHHHHHcCCCcEEEEEccHHH
Q 003969 640 HRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 640 k~Na~~ngl~nv~f~~gDaed 660 (783)
++|++.+ .+++|+++|+.+
T Consensus 115 ~~~~~~~--~~v~~~~~d~~~ 133 (227)
T 1g8a_A 115 VPIVEER--RNIVPILGDATK 133 (227)
T ss_dssp HHHHSSC--TTEEEEECCTTC
T ss_pred HHHHhcc--CCCEEEEccCCC
Confidence 9998765 689999999875
No 264
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=98.91 E-value=7.4e-10 Score=116.42 Aligned_cols=71 Identities=17% Similarity=0.152 Sum_probs=57.3
Q ss_pred HhhhccCCCC--CeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHH-------HcC-C-CcEEEEEccHHHH
Q 003969 593 GGDWADLGPD--TLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAE-------ING-I-KNCRFVCAKAEDV 661 (783)
Q Consensus 593 i~~~l~~~~g--~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~-------~ng-l-~nv~f~~gDaed~ 661 (783)
+.+++.+.++ .+|||+|||+|.+++.||..+.+|++||.++.+++.++.|++ .|+ + .+++++++|+.++
T Consensus 78 l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~ 157 (258)
T 2oyr_A 78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA 157 (258)
T ss_dssp HHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHH
T ss_pred HHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHH
Confidence 4445555566 899999999999999999998899999999987666666654 344 5 5799999999987
Q ss_pred HH
Q 003969 662 MG 663 (783)
Q Consensus 662 l~ 663 (783)
++
T Consensus 158 L~ 159 (258)
T 2oyr_A 158 LT 159 (258)
T ss_dssp ST
T ss_pred HH
Confidence 54
No 265
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=98.90 E-value=2.3e-09 Score=106.79 Aligned_cols=91 Identities=14% Similarity=0.121 Sum_probs=70.3
Q ss_pred CeEEEECCCccccCC-HHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHH
Q 003969 568 NLRFCISPTAFFQVN-TLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEI 645 (783)
Q Consensus 568 gl~f~isp~sFfQvN-~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~ 645 (783)
+..+++.|...|... ......+...+...+ .++.+|||+|||+|.+++.|++.. .+|+|+|+++.+++.|++|+..
T Consensus 28 ~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~ 105 (205)
T 3grz_A 28 QEIIRLDPGLAFGTGNHQTTQLAMLGIERAM--VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAAL 105 (205)
T ss_dssp CEEEEESCC-----CCHHHHHHHHHHHHHHC--SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH
T ss_pred ceeEEecCCcccCCCCCccHHHHHHHHHHhc--cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 456778888766543 444445555555443 467899999999999999999874 5999999999999999999999
Q ss_pred cCCCcEEEEEccHHH
Q 003969 646 NGIKNCRFVCAKAED 660 (783)
Q Consensus 646 ngl~nv~f~~gDaed 660 (783)
+++.+++++++|+.+
T Consensus 106 ~~~~~v~~~~~d~~~ 120 (205)
T 3grz_A 106 NGIYDIALQKTSLLA 120 (205)
T ss_dssp TTCCCCEEEESSTTT
T ss_pred cCCCceEEEeccccc
Confidence 999889999999754
No 266
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=98.90 E-value=1.4e-09 Score=112.34 Aligned_cols=68 Identities=18% Similarity=0.238 Sum_probs=55.7
Q ss_pred ccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh----CCEEEEEeCCHHHHHHHHHHHHHc
Q 003969 579 FQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR----VGMVIGIEMNASAVSDAHRNAEIN 646 (783)
Q Consensus 579 fQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~----~~~VigVE~s~~AIe~Ak~Na~~n 646 (783)
.+.....+..++..+++.+....+.+|||+|||+|.+++.+++. ..+|+|+|+++.|++.|++|+..+
T Consensus 29 ~~~~~~la~~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~ 100 (250)
T 1o9g_A 29 PAFPVRLATEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALL 100 (250)
T ss_dssp CCCCHHHHHHHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHh
Confidence 34445566677777777655446689999999999999999987 468999999999999999998866
No 267
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.89 E-value=2.1e-09 Score=97.65 Aligned_cols=75 Identities=21% Similarity=0.347 Sum_probs=62.5
Q ss_pred cEEEeCC--CcccC--------HHHHHHHhhhcc-ceeeEeecc------CCccEEEEEeCCHHHHHHHHHHHcCCccCC
Q 003969 167 SKCLVHL--PRKWH--------SDNLKKFLADHG-ILYKSAKKK------KGMTVGFVKFESVEQLKNAVEELEGISIGN 229 (783)
Q Consensus 167 ~i~V~nL--p~~~~--------~~~Lkklf~~~~-v~~~~i~~~------r~~gfgFVtF~s~Eea~kAIe~LnG~~~~G 229 (783)
-|+|.|+ |..+. .++|++.|++|| |..++|.+. +++|||||+|.+.++|++||+.|||..|.|
T Consensus 7 vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~G 86 (105)
T 3v4m_A 7 VLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFAN 86 (105)
T ss_dssp EEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred EEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 4788888 54444 368999999996 777777662 468999999999999999999999999999
Q ss_pred ceeEEEecCCCC
Q 003969 230 KTLKVANVVPRS 241 (783)
Q Consensus 230 r~L~V~~A~pr~ 241 (783)
|.|+|..+.+..
T Consensus 87 R~i~v~~~~~~~ 98 (105)
T 3v4m_A 87 RVVVTKYCDPDS 98 (105)
T ss_dssp EECEEEEECHHH
T ss_pred CEEEEEEeCHHH
Confidence 999998875543
No 268
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=98.88 E-value=2.8e-09 Score=105.31 Aligned_cols=64 Identities=17% Similarity=0.324 Sum_probs=57.6
Q ss_pred cCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHHH
Q 003969 598 DLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAEDV 661 (783)
Q Consensus 598 ~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gDaed~ 661 (783)
.+.++.+|||+|||+|.+++.+++.. .+|+|||+++.+++.|++|+..+++ .+++|+++|+.++
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 86 (197)
T 3eey_A 19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNM 86 (197)
T ss_dssp HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGG
T ss_pred cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHH
Confidence 34577899999999999999999873 5999999999999999999999998 7899999998654
No 269
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=98.87 E-value=2.3e-09 Score=120.93 Aligned_cols=66 Identities=17% Similarity=0.200 Sum_probs=58.9
Q ss_pred hhccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 595 ~~l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
.++.+.++.+|||+|||+|..++.|+... .+|+|+|+++.+++.+++|++.+|+.++.++++|+.+
T Consensus 253 ~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~ 321 (450)
T 2yxl_A 253 IVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARK 321 (450)
T ss_dssp HHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTC
T ss_pred HhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhh
Confidence 34456788899999999999999999864 6999999999999999999999999999999998653
No 270
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=98.87 E-value=6.9e-09 Score=100.17 Aligned_cols=71 Identities=18% Similarity=0.186 Sum_probs=61.9
Q ss_pred HHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHH
Q 003969 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAED 660 (783)
Q Consensus 589 L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~~gDaed 660 (783)
+...+++.+.+.++.+|||+|||+|.+++.+++. ..+|+|+|+++.+++.|++|+..+++. ++ ++++|+.+
T Consensus 13 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~ 86 (178)
T 3hm2_A 13 VRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPR 86 (178)
T ss_dssp HHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTG
T ss_pred HHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHh
Confidence 4455566667778889999999999999999988 579999999999999999999999997 89 99999754
No 271
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=98.87 E-value=1.4e-08 Score=102.89 Aligned_cols=84 Identities=11% Similarity=0.213 Sum_probs=69.0
Q ss_pred cccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh---CCEEEEEeCCHHHHHHHHHHHHHcCCC-cEEE
Q 003969 578 FFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIK-NCRF 653 (783)
Q Consensus 578 FfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~---~~~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f 653 (783)
++++.+.....|...+.. .++.+|||||||+|.+++.|++. ..+|++||+++.+++.|++|++.+++. +++|
T Consensus 39 ~~~~~~~~~~~l~~l~~~----~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~ 114 (221)
T 3u81_A 39 AMNVGDAKGQIMDAVIRE----YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTI 114 (221)
T ss_dssp GGGCCHHHHHHHHHHHHH----HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEE
T ss_pred CcccCHHHHHHHHHHHHh----cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEE
Confidence 356777766665544322 25679999999999999999985 469999999999999999999999995 5999
Q ss_pred EEccHHHHHHHH
Q 003969 654 VCAKAEDVMGSL 665 (783)
Q Consensus 654 ~~gDaed~l~~l 665 (783)
+++|+.+.++.+
T Consensus 115 ~~~d~~~~l~~~ 126 (221)
T 3u81_A 115 LNGASQDLIPQL 126 (221)
T ss_dssp EESCHHHHGGGT
T ss_pred EECCHHHHHHHH
Confidence 999999877654
No 272
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=98.87 E-value=1.1e-08 Score=106.08 Aligned_cols=82 Identities=17% Similarity=0.183 Sum_probs=67.0
Q ss_pred ccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh---CCEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEE
Q 003969 579 FQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIK-NCRFV 654 (783)
Q Consensus 579 fQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~---~~~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~ 654 (783)
+++.......|...+ . ..++.+|||||||+|..++.|++. ..+|+|||+++.+++.|++|+..+|+. +++|+
T Consensus 45 ~~~~~~~~~~l~~l~-~---~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~ 120 (248)
T 3tfw_A 45 HDVAANQGQFLALLV-R---LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLR 120 (248)
T ss_dssp CCCCHHHHHHHHHHH-H---HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred cccCHHHHHHHHHHH-h---hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 345565555544322 2 235689999999999999999998 579999999999999999999999996 79999
Q ss_pred EccHHHHHHH
Q 003969 655 CAKAEDVMGS 664 (783)
Q Consensus 655 ~gDaed~l~~ 664 (783)
++|+.+.++.
T Consensus 121 ~~d~~~~l~~ 130 (248)
T 3tfw_A 121 EGPALQSLES 130 (248)
T ss_dssp ESCHHHHHHT
T ss_pred EcCHHHHHHh
Confidence 9999987654
No 273
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=98.86 E-value=1e-08 Score=103.75 Aligned_cols=61 Identities=20% Similarity=0.266 Sum_probs=56.8
Q ss_pred CCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
.+.+|||||||+|.+++.||+. ...|+|||+++.+++.|++|+..+++.|++|+++|+.++
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l 100 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTL 100 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGH
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHH
Confidence 4678999999999999999988 469999999999999999999999999999999999873
No 274
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=98.86 E-value=2e-09 Score=119.31 Aligned_cols=77 Identities=25% Similarity=0.269 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC----------------------------------------
Q 003969 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---------------------------------------- 623 (783)
Q Consensus 584 ~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~---------------------------------------- 623 (783)
...+.|...++.++...++..|||+|||+|+|++.+|..+
T Consensus 178 pl~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~ 257 (385)
T 3ldu_A 178 PIRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESK 257 (385)
T ss_dssp CCCHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCC
T ss_pred CCcHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCC
Confidence 3455677777777777888999999999999999998763
Q ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHH
Q 003969 624 GMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAED 660 (783)
Q Consensus 624 ~~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~~gDaed 660 (783)
.+|+|+|+++.|++.|++|+..+|+. +++|.++|+.+
T Consensus 258 ~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~ 295 (385)
T 3ldu_A 258 FKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQ 295 (385)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGG
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhh
Confidence 36999999999999999999999996 69999999875
No 275
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.86 E-value=4.2e-09 Score=109.88 Aligned_cols=78 Identities=13% Similarity=0.125 Sum_probs=66.7
Q ss_pred ccccEEEeCCCcccCHHHHHHHhhhcc-ceeeEeec---cCCccEEEEEeCCHHHHHHHHHHHcCCcc-C---CceeEEE
Q 003969 164 VELSKCLVHLPRKWHSDNLKKFLADHG-ILYKSAKK---KKGMTVGFVKFESVEQLKNAVEELEGISI-G---NKTLKVA 235 (783)
Q Consensus 164 ~~~~i~V~nLp~~~~~~~Lkklf~~~~-v~~~~i~~---~r~~gfgFVtF~s~Eea~kAIe~LnG~~~-~---Gr~L~V~ 235 (783)
++.+|||+|||+.+++++|+++|++|| |..+.+.. ++++|||||+|.+.++|.+||+.|||..+ . ||.|.|.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~ 174 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVE 174 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEe
Confidence 456899999999999999999999995 66666665 67789999999999999999999965444 3 9999999
Q ss_pred ecCCCC
Q 003969 236 NVVPRS 241 (783)
Q Consensus 236 ~A~pr~ 241 (783)
.+.+..
T Consensus 175 ~~~~~~ 180 (261)
T 3sde_A 175 PMEQFD 180 (261)
T ss_dssp ECCCEE
T ss_pred eccccC
Confidence 887653
No 276
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.85 E-value=4e-09 Score=115.02 Aligned_cols=75 Identities=19% Similarity=0.173 Sum_probs=62.8
Q ss_pred CCccccEEEeC--CCcccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCcc---CCc--eeE
Q 003969 162 QDVELSKCLVH--LPRKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISI---GNK--TLK 233 (783)
Q Consensus 162 ~~~~~~i~V~n--Lp~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~---~Gr--~L~ 233 (783)
..+.-+|||+| |++.+++++|+++|++|| |.. +...++||||||+|.+.|+|++||+.|||.++ .|+ .|.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~--v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDA--LLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEE--EECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEE--EEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 45566899999 689999999999999997 544 33445789999999999999999999999988 355 688
Q ss_pred EEecC
Q 003969 234 VANVV 238 (783)
Q Consensus 234 V~~A~ 238 (783)
|+-+.
T Consensus 93 ~~~~~ 97 (345)
T 3tht_A 93 LNFVE 97 (345)
T ss_dssp EEECS
T ss_pred EEEee
Confidence 88774
No 277
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=98.84 E-value=6.5e-09 Score=115.20 Aligned_cols=75 Identities=21% Similarity=0.285 Sum_probs=64.3
Q ss_pred HHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCC----------------------------------------E
Q 003969 586 AEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG----------------------------------------M 625 (783)
Q Consensus 586 ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~----------------------------------------~ 625 (783)
.+.|...++.++...++..|||++||+|+|.+.+|..+. +
T Consensus 179 ~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~ 258 (384)
T 3ldg_A 179 KENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLD 258 (384)
T ss_dssp CHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC
T ss_pred cHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCce
Confidence 355666666777777889999999999999999887642 4
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCCc-EEEEEccHHH
Q 003969 626 VIGIEMNASAVSDAHRNAEINGIKN-CRFVCAKAED 660 (783)
Q Consensus 626 VigVE~s~~AIe~Ak~Na~~ngl~n-v~f~~gDaed 660 (783)
|+|+|+++.|++.|++|++.+|+.+ ++|+++|+.+
T Consensus 259 v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~ 294 (384)
T 3ldg_A 259 ISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQD 294 (384)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGG
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHH
Confidence 9999999999999999999999965 9999999875
No 278
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.83 E-value=6.1e-09 Score=96.79 Aligned_cols=75 Identities=12% Similarity=0.165 Sum_probs=62.0
Q ss_pred ccEEEeCC--CcccC---HHHHHHHhhhcc-ceeeEeecc--------CCccEEEEEeCCHHHHHHHHHHHcCCccCCce
Q 003969 166 LSKCLVHL--PRKWH---SDNLKKFLADHG-ILYKSAKKK--------KGMTVGFVKFESVEQLKNAVEELEGISIGNKT 231 (783)
Q Consensus 166 ~~i~V~nL--p~~~~---~~~Lkklf~~~~-v~~~~i~~~--------r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~ 231 (783)
--|+|.|+ |..+. +++|++.|++|| |..++|.+. +++||+||+|.+.++|.+||+.|||..|.||.
T Consensus 21 ~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~ 100 (118)
T 3ue2_A 21 TVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRK 100 (118)
T ss_dssp CEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 34899998 33333 689999999996 777777662 35699999999999999999999999999999
Q ss_pred eEEEecCCC
Q 003969 232 LKVANVVPR 240 (783)
Q Consensus 232 L~V~~A~pr 240 (783)
|+|..+.+.
T Consensus 101 i~v~~~~~~ 109 (118)
T 3ue2_A 101 VVAEVYDQE 109 (118)
T ss_dssp CEEEEECHH
T ss_pred EEEEEcChH
Confidence 999887543
No 279
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=98.82 E-value=8.5e-09 Score=110.68 Aligned_cols=74 Identities=9% Similarity=0.152 Sum_probs=65.5
Q ss_pred HHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHH
Q 003969 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662 (783)
Q Consensus 588 ~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l 662 (783)
.|+..+++++.+.++.+|||+|||+|.+++.+++.. .+|+|||+++.|++.|++|+..++ .+++|+++|+.++.
T Consensus 13 vLl~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l~ 88 (301)
T 1m6y_A 13 VMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREAD 88 (301)
T ss_dssp TTHHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHH
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHHH
Confidence 355667777777788999999999999999999984 799999999999999999998888 78999999988754
No 280
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=98.80 E-value=1.9e-09 Score=110.14 Aligned_cols=72 Identities=25% Similarity=0.284 Sum_probs=63.7
Q ss_pred HHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccH
Q 003969 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658 (783)
Q Consensus 587 e~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDa 658 (783)
..++..+++.+.+.++.+|||+|||+|.+++.|++.. .+|+|||+++.+++.|++|+..+++.++.++.+|+
T Consensus 77 ~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~ 149 (235)
T 1jg1_A 77 PHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG 149 (235)
T ss_dssp HHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc
Confidence 3445556666667788899999999999999999987 89999999999999999999999998899999997
No 281
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=1e-08 Score=92.50 Aligned_cols=65 Identities=22% Similarity=0.275 Sum_probs=55.7
Q ss_pred cccCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCCc
Q 003969 175 RKWHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRSF 242 (783)
Q Consensus 175 ~~~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr~~ 242 (783)
..+++++|+++|++|| |..+.++ ++++|||||+|.+.++|++||+.++| +.|+.|+|..|++++.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 3478999999999996 6666655 68899999999999999999999766 5799999999977653
No 282
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=98.79 E-value=8.7e-09 Score=106.07 Aligned_cols=69 Identities=20% Similarity=0.313 Sum_probs=62.4
Q ss_pred HHhhhccCCCCCeEEEecCCcCHHHHHHhhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEEccHHH
Q 003969 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIKN-CRFVCAKAED 660 (783)
Q Consensus 592 ~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~---~~~VigVE~s~~AIe~Ak~Na~~ngl~n-v~f~~gDaed 660 (783)
.++.++.+.++.+|||+|||+|.+++.+++. ..+|+|+|+++.+++.|++|++.+++.+ ++++++|+.+
T Consensus 84 ~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 156 (255)
T 3mb5_A 84 LIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYE 156 (255)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGG
T ss_pred HHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhh
Confidence 4556667778899999999999999999998 6799999999999999999999999976 9999999874
No 283
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=98.78 E-value=9.7e-09 Score=115.09 Aligned_cols=67 Identities=12% Similarity=0.249 Sum_probs=59.1
Q ss_pred hhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHH
Q 003969 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662 (783)
Q Consensus 595 ~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l 662 (783)
.++.+.++.+|||+|||+|.+++.++... .+|+|+|+++.+++.+++|++.+|+ ++.++++|+.+..
T Consensus 240 ~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~-~~~~~~~D~~~~~ 308 (429)
T 1sqg_A 240 TWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM-KATVKQGDGRYPS 308 (429)
T ss_dssp HHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC-CCEEEECCTTCTH
T ss_pred HHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC-CeEEEeCchhhch
Confidence 34456788999999999999999999886 6999999999999999999999998 5799999987653
No 284
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=98.78 E-value=3.8e-08 Score=103.97 Aligned_cols=76 Identities=12% Similarity=0.086 Sum_probs=59.4
Q ss_pred HHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCC-EEEEEeC-CHHHHHHHHHHH-----HHcCCC-----cEE
Q 003969 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG-MVIGIEM-NASAVSDAHRNA-----EINGIK-----NCR 652 (783)
Q Consensus 585 ~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~-~VigVE~-s~~AIe~Ak~Na-----~~ngl~-----nv~ 652 (783)
.++.|..++.......++.+|||||||+|.+++.+++.+. +|+|+|+ ++.+++.|++|+ +.+++. +++
T Consensus 63 ~~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~ 142 (281)
T 3bzb_A 63 GARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPK 142 (281)
T ss_dssp HHHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCE
T ss_pred HHHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeE
Confidence 4667777787776666788999999999999999998864 9999999 899999999999 556654 688
Q ss_pred EEEccHHH
Q 003969 653 FVCAKAED 660 (783)
Q Consensus 653 f~~gDaed 660 (783)
++..++.+
T Consensus 143 ~~~~~~~~ 150 (281)
T 3bzb_A 143 VVPYRWGD 150 (281)
T ss_dssp EEECCTTS
T ss_pred EEEecCCC
Confidence 88666443
No 285
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=98.78 E-value=7.6e-08 Score=99.88 Aligned_cols=86 Identities=13% Similarity=0.068 Sum_probs=70.6
Q ss_pred ccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh---CCEEEEEeCCHHHHHHHHHHHHHcCC-CcEE
Q 003969 577 AFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGI-KNCR 652 (783)
Q Consensus 577 sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~---~~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~ 652 (783)
.+.++.+.....|.. ++.. .++.+|||+|||+|..++.|++. ..+|++||+++.+++.|++|++.+|+ .+++
T Consensus 59 ~~~~~~~~~~~ll~~-l~~~---~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~ 134 (247)
T 1sui_A 59 NIMTTSADEGQFLSM-LLKL---INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKID 134 (247)
T ss_dssp GGGSCCHHHHHHHHH-HHHH---TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEE
T ss_pred CCCCcCHHHHHHHHH-HHHh---hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeE
Confidence 356677776655543 3332 34579999999999999999987 47999999999999999999999999 4799
Q ss_pred EEEccHHHHHHHHH
Q 003969 653 FVCAKAEDVMGSLL 666 (783)
Q Consensus 653 f~~gDaed~l~~l~ 666 (783)
|+++|+.+.++.+.
T Consensus 135 ~~~gda~~~l~~l~ 148 (247)
T 1sui_A 135 FREGPALPVLDEMI 148 (247)
T ss_dssp EEESCHHHHHHHHH
T ss_pred EEECCHHHHHHHHH
Confidence 99999999887653
No 286
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=98.78 E-value=7.5e-09 Score=114.99 Aligned_cols=76 Identities=25% Similarity=0.301 Sum_probs=64.7
Q ss_pred HHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCC----------------------------------------
Q 003969 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG---------------------------------------- 624 (783)
Q Consensus 585 ~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~---------------------------------------- 624 (783)
..+.|...++.++...++..|||++||+|+|.+.+|..+.
T Consensus 185 l~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~ 264 (393)
T 3k0b_A 185 IKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPL 264 (393)
T ss_dssp CCHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC
T ss_pred CcHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCc
Confidence 3455666666777777889999999999999999887643
Q ss_pred EEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHH
Q 003969 625 MVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAED 660 (783)
Q Consensus 625 ~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~~gDaed 660 (783)
+|+|+|+++.|++.|+.|+..+|+. +++|+++|+.+
T Consensus 265 ~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~ 301 (393)
T 3k0b_A 265 NIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVAD 301 (393)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGG
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHh
Confidence 4999999999999999999999996 49999999865
No 287
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=98.78 E-value=1.2e-08 Score=105.12 Aligned_cols=64 Identities=16% Similarity=0.325 Sum_probs=57.5
Q ss_pred CCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHc--------CCCcEEEEEccHHHHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEIN--------GIKNCRFVCAKAEDVMG 663 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~n--------gl~nv~f~~gDaed~l~ 663 (783)
.++.+|||+|||+|.+++.|++.. ..|+|||+++.+++.|++|++.+ ++.|+.++++|+.+.++
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~ 121 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLP 121 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGG
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHH
Confidence 467899999999999999999985 48999999999999999999987 88899999999986543
No 288
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=98.77 E-value=1e-08 Score=108.85 Aligned_cols=76 Identities=20% Similarity=0.296 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHH
Q 003969 581 VNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAE 659 (783)
Q Consensus 581 vN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gDae 659 (783)
++..... .+++.+.+.++.+|||+|||+|.++..|++.+.+|+|||+++.+++.|++++..+++ .+++++++|+.
T Consensus 12 ~d~~i~~----~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~ 87 (285)
T 1zq9_A 12 KNPLIIN----SIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVL 87 (285)
T ss_dssp CCHHHHH----HHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTT
T ss_pred CCHHHHH----HHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEccee
Confidence 4554444 455556667788999999999999999999999999999999999999999887776 68999999976
Q ss_pred H
Q 003969 660 D 660 (783)
Q Consensus 660 d 660 (783)
+
T Consensus 88 ~ 88 (285)
T 1zq9_A 88 K 88 (285)
T ss_dssp T
T ss_pred c
Confidence 4
No 289
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=98.76 E-value=1.3e-08 Score=105.45 Aligned_cols=87 Identities=22% Similarity=0.148 Sum_probs=72.3
Q ss_pred CccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh---CCEEEEEeCCHHHHHHHHHHHHHcCCC-cE
Q 003969 576 TAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIK-NC 651 (783)
Q Consensus 576 ~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~---~~~VigVE~s~~AIe~Ak~Na~~ngl~-nv 651 (783)
..++++.+.....|...+. . .++.+|||||||+|..++.|++. ..+|++||+++.+++.|++|++.+|+. ++
T Consensus 39 ~~~~~i~~~~~~~l~~l~~-~---~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i 114 (242)
T 3r3h_A 39 LANMQVAPEQAQFMQMLIR-L---TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKI 114 (242)
T ss_dssp GGGTSCCHHHHHHHHHHHH-H---HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTE
T ss_pred CCCCccCHHHHHHHHHHHh-h---cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcE
Confidence 3457788877777665443 2 24579999999999999999985 369999999999999999999999995 79
Q ss_pred EEEEccHHHHHHHHH
Q 003969 652 RFVCAKAEDVMGSLL 666 (783)
Q Consensus 652 ~f~~gDaed~l~~l~ 666 (783)
+|+++|+.+.++.+.
T Consensus 115 ~~~~gda~~~l~~~~ 129 (242)
T 3r3h_A 115 KLRLGPALDTLHSLL 129 (242)
T ss_dssp EEEESCHHHHHHHHH
T ss_pred EEEEcCHHHHHHHHh
Confidence 999999999887654
No 290
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.75 E-value=1.2e-08 Score=94.35 Aligned_cols=65 Identities=22% Similarity=0.260 Sum_probs=56.4
Q ss_pred HHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCCCCcc
Q 003969 179 SDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVPRSFD 243 (783)
Q Consensus 179 ~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~pr~~~ 243 (783)
.++|++.|++|| |..+.|.+..++|||||+|.+.++|++||+.|||..|.||.|+|..+.+..+.
T Consensus 31 ~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~~~y~ 96 (114)
T 3s6e_A 31 KDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYH 96 (114)
T ss_dssp HHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECHHHHH
T ss_pred HHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcHHHHH
Confidence 568899999996 77777766667899999999999999999999999999999999988655443
No 291
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=98.73 E-value=3.7e-08 Score=98.21 Aligned_cols=72 Identities=18% Similarity=0.151 Sum_probs=64.6
Q ss_pred HHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 590 YSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 590 ~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
...+++++...++.+|||+|||+|.+++.|++.+.+|+|+|+++.+++.|++|+..+++.+++|+++|+.+.
T Consensus 66 ~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~ 137 (210)
T 3lbf_A 66 VARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQG 137 (210)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC
T ss_pred HHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccC
Confidence 344555666778899999999999999999999999999999999999999999999999999999998763
No 292
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=98.72 E-value=1.1e-08 Score=107.17 Aligned_cols=70 Identities=13% Similarity=0.030 Sum_probs=60.6
Q ss_pred HHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 590 YSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 590 ~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
...+++.+.+.++.+|||+|||+|.++..|++.+.+|+|||+++.+++.|++++.. ..+++++++|+.++
T Consensus 18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~--~~~v~~i~~D~~~~ 87 (255)
T 3tqs_A 18 LQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQ--QKNITIYQNDALQF 87 (255)
T ss_dssp HHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTT--CTTEEEEESCTTTC
T ss_pred HHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhh--CCCcEEEEcchHhC
Confidence 34455566677889999999999999999999999999999999999999999764 56899999998764
No 293
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=98.72 E-value=3.2e-08 Score=100.72 Aligned_cols=81 Identities=15% Similarity=0.285 Sum_probs=66.2
Q ss_pred cCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEc
Q 003969 580 QVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCA 656 (783)
Q Consensus 580 QvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~~g 656 (783)
.+.+.....+...+ ...++.+|||+|||+|.+++.|++. ..+|+++|+++.+++.|++|+..+++. ++.++++
T Consensus 37 ~~~~~~~~~l~~~~----~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 112 (233)
T 2gpy_A 37 IMDLLGMESLLHLL----KMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFG 112 (233)
T ss_dssp CCCHHHHHHHHHHH----HHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS
T ss_pred CcCHHHHHHHHHHH----hccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence 45565555554433 2335679999999999999999998 479999999999999999999999985 6999999
Q ss_pred cHHHHHHH
Q 003969 657 KAEDVMGS 664 (783)
Q Consensus 657 Daed~l~~ 664 (783)
|+.+.++.
T Consensus 113 d~~~~~~~ 120 (233)
T 2gpy_A 113 DALQLGEK 120 (233)
T ss_dssp CGGGSHHH
T ss_pred CHHHHHHh
Confidence 99886654
No 294
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=98.71 E-value=3.7e-08 Score=98.62 Aligned_cols=63 Identities=17% Similarity=0.170 Sum_probs=57.0
Q ss_pred CCCeEEEecCCcCHHHHHHhhh---CCEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAEDVMG 663 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~---~~~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~~gDaed~l~ 663 (783)
++.+|||+|||+|.+++.|++. ..+|++||+++.+++.|++|++.+++. +++++++|+.+.++
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 122 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAA 122 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHT
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhc
Confidence 4579999999999999999987 469999999999999999999998985 59999999988664
No 295
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=98.71 E-value=1.4e-08 Score=108.72 Aligned_cols=71 Identities=21% Similarity=0.239 Sum_probs=62.1
Q ss_pred HHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 588 ~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
.+...+++.+.+.++.+|||+|||+|.++..|++.+.+|+|||+++.+++.|++++. +..|++++++|+.+
T Consensus 37 ~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~--~~~~v~vi~gD~l~ 107 (295)
T 3gru_A 37 NFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKE--LYNNIEIIWGDALK 107 (295)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHH--HCSSEEEEESCTTT
T ss_pred HHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhc--cCCCeEEEECchhh
Confidence 344556666677788999999999999999999999999999999999999999987 45689999999875
No 296
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=98.71 E-value=6.5e-08 Score=99.03 Aligned_cols=83 Identities=17% Similarity=0.196 Sum_probs=68.4
Q ss_pred cCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEE
Q 003969 580 QVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIKN-CRFVC 655 (783)
Q Consensus 580 QvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~---~~~VigVE~s~~AIe~Ak~Na~~ngl~n-v~f~~ 655 (783)
++.+.....|...+ ...++.+|||+|||+|.+++.|++. ..+|++||+++.+++.|++++..+|+.+ +.|++
T Consensus 43 ~~~~~~~~~l~~l~----~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~ 118 (239)
T 2hnk_A 43 QISPEEGQFLNILT----KISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKL 118 (239)
T ss_dssp SCCHHHHHHHHHHH----HHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEE
T ss_pred ccCHHHHHHHHHHH----HhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEE
Confidence 46666665555433 2235679999999999999999988 4799999999999999999999999965 99999
Q ss_pred ccHHHHHHHHH
Q 003969 656 AKAEDVMGSLL 666 (783)
Q Consensus 656 gDaed~l~~l~ 666 (783)
+|+.+.++.+.
T Consensus 119 ~d~~~~~~~~~ 129 (239)
T 2hnk_A 119 GSALETLQVLI 129 (239)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99998776553
No 297
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=98.70 E-value=5e-08 Score=99.50 Aligned_cols=69 Identities=19% Similarity=0.220 Sum_probs=61.3
Q ss_pred HHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHH
Q 003969 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAED 660 (783)
Q Consensus 592 ~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gDaed 660 (783)
.++..+.+.++.+|||+|||+|.+++.+++...+|+++|+++.+++.|++|+..+++ .++.++.+|+.+
T Consensus 82 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 151 (248)
T 2yvl_A 82 YIALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKD 151 (248)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTT
T ss_pred HHHHhcCCCCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhh
Confidence 445556667889999999999999999999888999999999999999999999998 689999998754
No 298
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=98.69 E-value=1.6e-07 Score=96.58 Aligned_cols=85 Identities=18% Similarity=0.148 Sum_probs=69.6
Q ss_pred cccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh---CCEEEEEeCCHHHHHHHHHHHHHcCCC-cEEE
Q 003969 578 FFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIK-NCRF 653 (783)
Q Consensus 578 FfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~---~~~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f 653 (783)
+.++.+.....|...+ .. .++.+|||+|||+|..++.+++. ..+|++||+++.+++.|++|++.+|+. ++++
T Consensus 51 ~~~~~~~~~~~l~~l~-~~---~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~ 126 (237)
T 3c3y_A 51 YMSTSPLAGQLMSFVL-KL---VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINF 126 (237)
T ss_dssp GGSCCHHHHHHHHHHH-HH---TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEE
T ss_pred CCCcCHHHHHHHHHHH-Hh---hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEE
Confidence 4566776665544333 32 34679999999999999999987 479999999999999999999999995 5999
Q ss_pred EEccHHHHHHHHH
Q 003969 654 VCAKAEDVMGSLL 666 (783)
Q Consensus 654 ~~gDaed~l~~l~ 666 (783)
+++|+.++++.+.
T Consensus 127 ~~gda~~~l~~l~ 139 (237)
T 3c3y_A 127 IESDAMLALDNLL 139 (237)
T ss_dssp EESCHHHHHHHHH
T ss_pred EEcCHHHHHHHHH
Confidence 9999999887654
No 299
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=98.68 E-value=3.9e-08 Score=103.07 Aligned_cols=70 Identities=17% Similarity=0.174 Sum_probs=62.0
Q ss_pred HHhhhccCCCCCeEEEecCCcCHHHHHHhhh---CCEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHHH
Q 003969 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAEDV 661 (783)
Q Consensus 592 ~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~---~~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gDaed~ 661 (783)
.++.++.+.++.+|||+|||+|.+++.|++. ..+|+++|+++.+++.|++|+..+++ .+++++++|+.+.
T Consensus 103 ~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 176 (277)
T 1o54_A 103 FIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG 176 (277)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC
T ss_pred HHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc
Confidence 4555667778899999999999999999988 47999999999999999999999998 6899999998753
No 300
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=98.68 E-value=5e-08 Score=100.11 Aligned_cols=71 Identities=28% Similarity=0.379 Sum_probs=62.8
Q ss_pred HHHhhhccCCCCCeEEEecCCcCHHHHHHhhh---CCEEEEEeCCHHHHHHHHHHHHHc-CCCcEEEEEccHHHH
Q 003969 591 SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEIN-GIKNCRFVCAKAEDV 661 (783)
Q Consensus 591 ~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~---~~~VigVE~s~~AIe~Ak~Na~~n-gl~nv~f~~gDaed~ 661 (783)
..++.++.+.++.+|||+|||+|.+++.|++. ..+|+++|+++.+++.|++|++.+ |..++.++++|+.+.
T Consensus 86 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~ 160 (258)
T 2pwy_A 86 SAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEA 160 (258)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGC
T ss_pred HHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhc
Confidence 34566667778899999999999999999988 579999999999999999999988 877899999998653
No 301
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=98.67 E-value=4.2e-08 Score=101.54 Aligned_cols=94 Identities=13% Similarity=0.080 Sum_probs=68.8
Q ss_pred ccccceEEeeCCeEEEECCCccccCCH-HHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCC
Q 003969 557 VVEARIHDSISNLRFCISPTAFFQVNT-LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMN 632 (783)
Q Consensus 557 ~G~~~I~E~i~gl~f~isp~sFfQvN~-~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s 632 (783)
+|+..+ ...+..||+ |...+ ..+..|+. -++.+.+.+|.+|||||||+|+++..||+.+ ++|+|||++
T Consensus 40 yge~~~--~~~~~e~r~-----w~p~rsklaa~i~~-gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s 111 (233)
T 4df3_A 40 YGERIF--RYNGEEYRE-----WNAYRSKLAAALLK-GLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFA 111 (233)
T ss_dssp SSCCEE--EETTEEEEE-----CCTTTCHHHHHHHT-TCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECC
T ss_pred cCceEE--EcCCceeee-----ECCCchHHHHHHHh-chhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCC
Confidence 455443 234566665 33333 22333332 3455678999999999999999999999974 699999999
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 633 ASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 633 ~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
+.|++.|+++++. ..|+.++.+|+.+
T Consensus 112 ~~~~~~l~~~a~~--~~ni~~V~~d~~~ 137 (233)
T 4df3_A 112 PRVMRDLLTVVRD--RRNIFPILGDARF 137 (233)
T ss_dssp HHHHHHHHHHSTT--CTTEEEEESCTTC
T ss_pred HHHHHHHHHhhHh--hcCeeEEEEeccC
Confidence 9999999998764 4589999998764
No 302
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=98.67 E-value=3.8e-08 Score=103.21 Aligned_cols=62 Identities=16% Similarity=0.377 Sum_probs=55.6
Q ss_pred CCCCCeEEEecCCcCHHHHHHhhhC----CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHH
Q 003969 599 LGPDTLLFDVCCGTGTIGLTLAHRV----GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAED 660 (783)
Q Consensus 599 ~~~g~~VLDLgCGtGti~l~LA~~~----~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gDaed 660 (783)
+.++.+|||||||+|.+++.|++.. .+|+|||+++.||+.|++++...+. .+++|+++|+.+
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~ 134 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRD 134 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTT
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccc
Confidence 4578999999999999999999874 3899999999999999999988776 479999999876
No 303
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=98.67 E-value=1.1e-07 Score=105.63 Aligned_cols=75 Identities=17% Similarity=0.110 Sum_probs=62.1
Q ss_pred HHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHH-------HHcCC--CcEEEEE
Q 003969 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNA-------EINGI--KNCRFVC 655 (783)
Q Consensus 587 e~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na-------~~ngl--~nv~f~~ 655 (783)
..++..+++.+.+.++.+|||||||+|.+++.+|... .+|+|||+++.+++.|++|+ +.+|+ .+|+|++
T Consensus 159 ~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~ 238 (438)
T 3uwp_A 159 FDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER 238 (438)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEE
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 3445556666778889999999999999999999763 47999999999999999875 34676 5899999
Q ss_pred ccHHHH
Q 003969 656 AKAEDV 661 (783)
Q Consensus 656 gDaed~ 661 (783)
||+.+.
T Consensus 239 GD~~~l 244 (438)
T 3uwp_A 239 GDFLSE 244 (438)
T ss_dssp CCTTSH
T ss_pred CcccCC
Confidence 999874
No 304
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=98.67 E-value=2.5e-08 Score=104.10 Aligned_cols=69 Identities=14% Similarity=0.193 Sum_probs=58.4
Q ss_pred HHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 589 L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~-~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
+...+++.+.+.++.+|||+|||+|.++..|++. +.+|+|||+++.+++.|+++ +..+++++++|+.++
T Consensus 19 i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~----~~~~v~~i~~D~~~~ 88 (249)
T 3ftd_A 19 VLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI----GDERLEVINEDASKF 88 (249)
T ss_dssp HHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS----CCTTEEEECSCTTTC
T ss_pred HHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc----cCCCeEEEEcchhhC
Confidence 3444556667778889999999999999999999 48999999999999999987 345899999998753
No 305
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=98.66 E-value=9.7e-08 Score=96.45 Aligned_cols=64 Identities=25% Similarity=0.357 Sum_probs=57.8
Q ss_pred cCCCCCeEEEecCCcCHHHHHHhhhCC-------EEEEEeCCHHHHHHHHHHHHHcC-----CCcEEEEEccHHHH
Q 003969 598 DLGPDTLLFDVCCGTGTIGLTLAHRVG-------MVIGIEMNASAVSDAHRNAEING-----IKNCRFVCAKAEDV 661 (783)
Q Consensus 598 ~~~~g~~VLDLgCGtGti~l~LA~~~~-------~VigVE~s~~AIe~Ak~Na~~ng-----l~nv~f~~gDaed~ 661 (783)
.+.++.+|||+|||+|.+++.|++... +|+|||+++.+++.|++|+..++ ..+++|+++|+.+.
T Consensus 77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 152 (227)
T 2pbf_A 77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQV 152 (227)
T ss_dssp TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGC
T ss_pred hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhc
Confidence 355788999999999999999999865 99999999999999999999888 67899999998764
No 306
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=98.66 E-value=4.9e-08 Score=100.14 Aligned_cols=63 Identities=17% Similarity=0.132 Sum_probs=57.3
Q ss_pred CCCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l 662 (783)
.++.+|||+|||+|.+++.|+.. ..+|+|||+++.|++.|++|++.+++.|++|+++|++++.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 133 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFG 133 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHT
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhc
Confidence 46789999999999999999954 5799999999999999999999999989999999998753
No 307
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=98.66 E-value=4.6e-08 Score=100.74 Aligned_cols=69 Identities=20% Similarity=0.263 Sum_probs=59.4
Q ss_pred HHhhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHHHH
Q 003969 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAEDVM 662 (783)
Q Consensus 592 ~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~~gDaed~l 662 (783)
.+.+++ .++.+|||+|||+|.+++.|++.+ .+|+|+|+++.+++.|++|++.||+. +++++++|+.+.+
T Consensus 8 ~l~~~v--~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l 79 (225)
T 3kr9_A 8 LVASFV--SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAF 79 (225)
T ss_dssp HHHTTS--CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC
T ss_pred HHHHhC--CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhc
Confidence 344444 367899999999999999999975 58999999999999999999999996 5999999986543
No 308
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=98.66 E-value=4.8e-08 Score=101.67 Aligned_cols=63 Identities=22% Similarity=0.260 Sum_probs=58.4
Q ss_pred CCCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l 662 (783)
.++.+|||||||+|.+++.|+.. ..+|+|||+++.+++.|++|++.+++.|++|+++|++++.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~ 143 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLA 143 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhh
Confidence 46789999999999999999987 4699999999999999999999999999999999998864
No 309
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=98.65 E-value=3.8e-08 Score=102.48 Aligned_cols=69 Identities=9% Similarity=0.102 Sum_probs=60.0
Q ss_pred HHhhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEEccHHHHH
Q 003969 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKN-CRFVCAKAEDVM 662 (783)
Q Consensus 592 ~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~n-v~f~~gDaed~l 662 (783)
.+.+++. ++.+|||+|||+|.+++.|++.. .+|+|+|+++.+++.|++|++.||+.+ ++++++|+.+.+
T Consensus 14 ~i~~~v~--~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~ 85 (244)
T 3gnl_A 14 KVASYIT--KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVI 85 (244)
T ss_dssp HHHTTCC--SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC
T ss_pred HHHHhCC--CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhcc
Confidence 3455543 67899999999999999999975 589999999999999999999999965 999999987654
No 310
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=98.65 E-value=2.5e-07 Score=94.68 Aligned_cols=84 Identities=17% Similarity=0.177 Sum_probs=68.3
Q ss_pred ccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEE
Q 003969 579 FQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIK-NCRFV 654 (783)
Q Consensus 579 fQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~ 654 (783)
.++.+.....|...+ .. .++.+|||+|||+|.+++.|++.. .+|++||+++.+++.|++|+..+|+. +++|+
T Consensus 54 ~~~~~~~~~~l~~l~-~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~ 129 (232)
T 3cbg_A 54 MQISPEQAQFLGLLI-SL---TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLR 129 (232)
T ss_dssp GSCCHHHHHHHHHHH-HH---HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEE
T ss_pred cCcCHHHHHHHHHHH-Hh---cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 356776666555433 22 245799999999999999999873 59999999999999999999999995 59999
Q ss_pred EccHHHHHHHHH
Q 003969 655 CAKAEDVMGSLL 666 (783)
Q Consensus 655 ~gDaed~l~~l~ 666 (783)
.+|+.+.++.+.
T Consensus 130 ~~d~~~~l~~l~ 141 (232)
T 3cbg_A 130 LGPALATLEQLT 141 (232)
T ss_dssp ESCHHHHHHHHH
T ss_pred EcCHHHHHHHHH
Confidence 999998877653
No 311
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=98.65 E-value=4.8e-08 Score=107.42 Aligned_cols=60 Identities=7% Similarity=0.045 Sum_probs=55.2
Q ss_pred CCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
.++.+|||+| |+|.+++.+++.. .+|+|||+++.+++.|++|++.+|+.+++|+++|+.+
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~ 232 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRK 232 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTS
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhh
Confidence 3578999999 9999999999874 5999999999999999999999999899999999865
No 312
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=98.64 E-value=1.1e-08 Score=87.54 Aligned_cols=40 Identities=35% Similarity=0.648 Sum_probs=36.2
Q ss_pred CCCCCcccccccccccccccCCCCCCCccccCcCccCCCC
Q 003969 75 PSLHPLHKTSLCSYFRKVGTCCHGSTCRYAHGEEELRIRP 114 (783)
Q Consensus 75 ~~~~~~~kt~~c~~~~~~~~c~~g~~c~~ahg~~elr~~~ 114 (783)
..+++.|||.||++|.+.|.|++|++|+|||+.+|||..+
T Consensus 4 ~~~~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~ 43 (77)
T 1m9o_A 4 MTTSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQAN 43 (77)
T ss_dssp CCCSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC
T ss_pred CCCCCCccchhCHHhhhCCCcCCCCCccCCCCChhhcccc
Confidence 4567899999999998889999999999999999999754
No 313
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=98.63 E-value=6.5e-08 Score=100.92 Aligned_cols=71 Identities=27% Similarity=0.342 Sum_probs=61.9
Q ss_pred HHHhhhccCCCCCeEEEecCCcCHHHHHHhhh---CCEEEEEeCCHHHHHHHHHHHHHc-C--CCcEEEEEccHHHH
Q 003969 591 SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEIN-G--IKNCRFVCAKAEDV 661 (783)
Q Consensus 591 ~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~---~~~VigVE~s~~AIe~Ak~Na~~n-g--l~nv~f~~gDaed~ 661 (783)
..++..+.+.++.+|||+|||+|.+++.|++. ..+|+++|+++.+++.|++|+..+ | ..++.++++|+.+.
T Consensus 89 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~ 165 (280)
T 1i9g_A 89 AQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS 165 (280)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC
T ss_pred HHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc
Confidence 44556667778899999999999999999986 579999999999999999999988 6 57899999998753
No 314
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=98.63 E-value=6.7e-08 Score=97.75 Aligned_cols=70 Identities=19% Similarity=0.178 Sum_probs=61.4
Q ss_pred HHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 589 L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
++..+++.+...++.+|||+|||+|.++..|++.+.+|+|||+++.+++.|++++..++ +++++++|+.+
T Consensus 58 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~d~~~ 127 (231)
T 1vbf_A 58 LGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYN--NIKLILGDGTL 127 (231)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCS--SEEEEESCGGG
T ss_pred HHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCccc
Confidence 34455566667788899999999999999999998999999999999999999988776 89999999875
No 315
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=98.63 E-value=5.1e-08 Score=115.91 Aligned_cols=76 Identities=25% Similarity=0.326 Sum_probs=64.6
Q ss_pred HHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC-----------------------------------------
Q 003969 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV----------------------------------------- 623 (783)
Q Consensus 585 ~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~----------------------------------------- 623 (783)
..+.|...++.++...++..|||++||+|+|.+.+|..+
T Consensus 174 l~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~ 253 (703)
T 3v97_A 174 IKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLA 253 (703)
T ss_dssp SCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccc
Confidence 334566666666677778899999999999999888653
Q ss_pred ---CEEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEEccHHH
Q 003969 624 ---GMVIGIEMNASAVSDAHRNAEINGIKN-CRFVCAKAED 660 (783)
Q Consensus 624 ---~~VigVE~s~~AIe~Ak~Na~~ngl~n-v~f~~gDaed 660 (783)
.+|+|+|+++.|++.|+.|+..+|+.+ ++|.++|+.+
T Consensus 254 ~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~ 294 (703)
T 3v97_A 254 EYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQ 294 (703)
T ss_dssp HCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGG
T ss_pred cCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhh
Confidence 479999999999999999999999975 9999999875
No 316
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=98.62 E-value=5.8e-08 Score=100.28 Aligned_cols=68 Identities=15% Similarity=0.156 Sum_probs=59.4
Q ss_pred HhhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHHHH
Q 003969 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAEDVM 662 (783)
Q Consensus 593 i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~~gDaed~l 662 (783)
+.+++. ++.+|||+|||+|.+++.|++.+ .+|+|+|+++.+++.|++|++.+|+. +++++++|+.+.+
T Consensus 15 i~~~v~--~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~ 85 (230)
T 3lec_A 15 VANYVP--KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAF 85 (230)
T ss_dssp HHTTSC--TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC
T ss_pred HHHhCC--CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc
Confidence 444443 67899999999999999999975 58999999999999999999999996 4999999987654
No 317
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=98.61 E-value=1e-07 Score=105.03 Aligned_cols=75 Identities=15% Similarity=0.166 Sum_probs=64.5
Q ss_pred HHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCC-EEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEEccHHH
Q 003969 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG-MVIGIEMNASAVSDAHRNAEINGIKN-CRFVCAKAED 660 (783)
Q Consensus 585 ~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~-~VigVE~s~~AIe~Ak~Na~~ngl~n-v~f~~gDaed 660 (783)
....+...+...+...++.+|||||||+|.+++.+++.+. +|+|||++ .+++.|+++++.+++.+ ++|+++|+++
T Consensus 47 r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 123 (376)
T 3r0q_C 47 RMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVED 123 (376)
T ss_dssp HHHHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGG
T ss_pred HHHHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhh
Confidence 3445556666666667889999999999999999999864 99999999 99999999999999965 9999999875
No 318
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=98.60 E-value=6e-08 Score=102.55 Aligned_cols=73 Identities=19% Similarity=0.091 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 581 VNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 581 vN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
++...... +++.+.+.++ +|||+|||+|.++..|++.+.+|+|||+++.+++.+++++. + .+++++++|+.+
T Consensus 31 ~d~~i~~~----Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~--~-~~v~vi~~D~l~ 102 (271)
T 3fut_A 31 VSEAHLRR----IVEAARPFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLS--G-LPVRLVFQDALL 102 (271)
T ss_dssp CCHHHHHH----HHHHHCCCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTT--T-SSEEEEESCGGG
T ss_pred CCHHHHHH----HHHhcCCCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC--C-CCEEEEECChhh
Confidence 45544444 5555567778 99999999999999999999999999999999999999875 2 589999999875
Q ss_pred H
Q 003969 661 V 661 (783)
Q Consensus 661 ~ 661 (783)
+
T Consensus 103 ~ 103 (271)
T 3fut_A 103 Y 103 (271)
T ss_dssp S
T ss_pred C
Confidence 3
No 319
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=98.60 E-value=7.3e-08 Score=102.70 Aligned_cols=87 Identities=21% Similarity=0.223 Sum_probs=72.8
Q ss_pred ECCCccccCCHHHHHHHHHHHhhhcc-CCCCCeEEEecCCcCHHHHHHhhh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-
Q 003969 573 ISPTAFFQVNTLAAEKLYSLGGDWAD-LGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIK- 649 (783)
Q Consensus 573 isp~sFfQvN~~~ae~L~~~i~~~l~-~~~g~~VLDLgCGtGti~l~LA~~-~~~VigVE~s~~AIe~Ak~Na~~ngl~- 649 (783)
+++..|.|.+ .........+++.+. +.++.+|||+|||+|.+++.|++. ..+|+|||+++.+++.|++|+..+++.
T Consensus 89 y~~~~f~~~~-~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~ 167 (312)
T 3vc1_A 89 YEKKVIAELH-RLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDD 167 (312)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTT
T ss_pred cchHHHhhhh-hHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC
Confidence 3455565543 344455577778777 778899999999999999999998 789999999999999999999999995
Q ss_pred cEEEEEccHHH
Q 003969 650 NCRFVCAKAED 660 (783)
Q Consensus 650 nv~f~~gDaed 660 (783)
+++|+++|+.+
T Consensus 168 ~v~~~~~d~~~ 178 (312)
T 3vc1_A 168 HVRSRVCNMLD 178 (312)
T ss_dssp TEEEEECCTTS
T ss_pred ceEEEECChhc
Confidence 79999999875
No 320
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=98.60 E-value=1.3e-07 Score=97.41 Aligned_cols=64 Identities=16% Similarity=0.311 Sum_probs=55.7
Q ss_pred CCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHH------cCCCcEEEEEccHHHHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEI------NGIKNCRFVCAKAEDVMG 663 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~------ngl~nv~f~~gDaed~l~ 663 (783)
.++.+|||||||+|.+++.||+.. ..|+|||+++.|++.|+++++. .++.|+.|+++|+.+.++
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~ 116 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLP 116 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHH
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhh
Confidence 356789999999999999999874 6899999999999999999865 567899999999987554
No 321
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=98.60 E-value=3.6e-07 Score=97.74 Aligned_cols=66 Identities=11% Similarity=0.051 Sum_probs=58.3
Q ss_pred hhccCCCCCeEEEecCCcCHHH-HHHhhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 595 DWADLGPDTLLFDVCCGTGTIG-LTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 595 ~~l~~~~g~~VLDLgCGtGti~-l~LA~~-~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
.++.+.++.+|||+|||+|.++ +.+|+. ..+|+|||+++++++.|+++++..|+.+++|+++|+.+
T Consensus 116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~ 183 (298)
T 3fpf_A 116 ALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETV 183 (298)
T ss_dssp HHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGG
T ss_pred HHcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhh
Confidence 4677889999999999999776 556663 57999999999999999999999999889999999876
No 322
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=98.60 E-value=7.4e-08 Score=100.89 Aligned_cols=90 Identities=17% Similarity=0.145 Sum_probs=67.2
Q ss_pred eEEEECCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCC
Q 003969 569 LRFCISPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI 648 (783)
Q Consensus 569 l~f~isp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl 648 (783)
+.|.-.+..||...... ......+++.+...++.+|||+|||+|.+++.|++.+.+|+|||+++.+++.|++++..+++
T Consensus 89 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~ 167 (286)
T 3m70_A 89 LGFYCKKEDYFSKKYNT-TAIHGDVVDAAKIISPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENL 167 (286)
T ss_dssp EEEEEEGGGHHHHHHCC-CCCCHHHHHHHHHSCSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred HhhhccchhhhhhhcCc-CchHHHHHHHhhccCCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCC
Confidence 45555666665321100 00112223333334678999999999999999999988999999999999999999999998
Q ss_pred CcEEEEEccHHH
Q 003969 649 KNCRFVCAKAED 660 (783)
Q Consensus 649 ~nv~f~~gDaed 660 (783)
+++|+++|+.+
T Consensus 168 -~~~~~~~d~~~ 178 (286)
T 3m70_A 168 -NISTALYDINA 178 (286)
T ss_dssp -CEEEEECCGGG
T ss_pred -ceEEEEecccc
Confidence 89999999865
No 323
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=98.59 E-value=4.1e-07 Score=98.93 Aligned_cols=65 Identities=11% Similarity=0.083 Sum_probs=56.5
Q ss_pred CCCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHHc--CC--CcEEEEEccHHHHHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEIN--GI--KNCRFVCAKAEDVMGS 664 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~n--gl--~nv~f~~gDaed~l~~ 664 (783)
..+.+|||||||+|.+++.|++. ..+|++||+++.+++.|++|+... ++ .+++++++|+.++++.
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~ 189 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKN 189 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHT
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHh
Confidence 45679999999999999999987 469999999999999999998753 44 4799999999987654
No 324
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=98.59 E-value=1.6e-07 Score=99.39 Aligned_cols=78 Identities=18% Similarity=0.132 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHHH
Q 003969 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAEDV 661 (783)
Q Consensus 584 ~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~-~~~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~~gDaed~ 661 (783)
......+..+++.+.+.++.+|||||||+|.+++.|++. ..+|+|||+++.+++.|++++..+++. +++|+++|+.++
T Consensus 55 ~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 134 (302)
T 3hem_A 55 EAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF 134 (302)
T ss_dssp HHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC
T ss_pred HHHHHHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc
Confidence 344456677788888888999999999999999999998 789999999999999999999999996 799999999865
No 325
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=98.59 E-value=1.3e-07 Score=96.92 Aligned_cols=73 Identities=26% Similarity=0.338 Sum_probs=63.4
Q ss_pred HHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHHH
Q 003969 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAEDV 661 (783)
Q Consensus 589 L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~~gDaed~ 661 (783)
.+..++..+.+.++.+|||+|||+|.+++.|++.. .+|+|||+++.+++.|++++..+++. +++|+++|+.+.
T Consensus 24 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~ 98 (256)
T 1nkv_A 24 KYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY 98 (256)
T ss_dssp HHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhC
Confidence 34445566667788999999999999999999874 69999999999999999999999984 899999998764
No 326
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=98.58 E-value=7.4e-08 Score=99.35 Aligned_cols=70 Identities=23% Similarity=0.258 Sum_probs=62.0
Q ss_pred HHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 591 SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 591 ~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
..+++.+...++.+|||||||+|.++..|++.+.+|+|+|+++.+++.|++++..+++.++.|+++|+++
T Consensus 27 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~ 96 (260)
T 1vl5_A 27 AKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ 96 (260)
T ss_dssp HHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-C
T ss_pred HHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHh
Confidence 3445555666788999999999999999999988999999999999999999999999899999999876
No 327
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=98.58 E-value=7.9e-08 Score=96.44 Aligned_cols=76 Identities=12% Similarity=0.135 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCC-----cEEEEEc
Q 003969 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIK-----NCRFVCA 656 (783)
Q Consensus 584 ~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~-----nv~f~~g 656 (783)
......+..+.+++...++.+|||+|||+|.++..|++.. .+|+|||+++.+++.|++++..+++. +++|+++
T Consensus 12 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~ 91 (219)
T 3jwg_A 12 NLNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQS 91 (219)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEEC
T ss_pred cchHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeC
Confidence 3445555666666665677899999999999999999876 69999999999999999999887775 7999999
Q ss_pred cHH
Q 003969 657 KAE 659 (783)
Q Consensus 657 Dae 659 (783)
|+.
T Consensus 92 d~~ 94 (219)
T 3jwg_A 92 SLV 94 (219)
T ss_dssp CSS
T ss_pred ccc
Confidence 974
No 328
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=98.58 E-value=1e-07 Score=103.55 Aligned_cols=89 Identities=17% Similarity=0.216 Sum_probs=70.5
Q ss_pred eCCeEEEECCCccccCCHH-HHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHH
Q 003969 566 ISNLRFCISPTAFFQVNTL-AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRN 642 (783)
Q Consensus 566 i~gl~f~isp~sFfQvN~~-~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~N 642 (783)
+.++.+...|+.|.+.... ....| ++.+....+.+|||+|||+|.+++.+++.. .+|+|||+++.|++.|++|
T Consensus 164 ~~~~~~~~~~gvf~~~~~d~~~~~l----l~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~ 239 (343)
T 2pjd_A 164 VDGLTVKTLPGVFSRDGLDVGSQLL----LSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRAT 239 (343)
T ss_dssp ETTEEEEECTTCTTSSSCCHHHHHH----HHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHH
T ss_pred ccceEEEecCCccCCCCCcHHHHHH----HHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Confidence 3678899999999886643 23333 333333456789999999999999999886 5899999999999999999
Q ss_pred HHHcCCCcEEEEEccHH
Q 003969 643 AEINGIKNCRFVCAKAE 659 (783)
Q Consensus 643 a~~ngl~nv~f~~gDae 659 (783)
+..+++. ++++.+|+.
T Consensus 240 ~~~~~~~-~~~~~~d~~ 255 (343)
T 2pjd_A 240 LAANGVE-GEVFASNVF 255 (343)
T ss_dssp HHHTTCC-CEEEECSTT
T ss_pred HHHhCCC-CEEEEcccc
Confidence 9998885 677777754
No 329
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=98.57 E-value=1.2e-07 Score=103.31 Aligned_cols=72 Identities=26% Similarity=0.252 Sum_probs=60.2
Q ss_pred HHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEEccHHHH
Q 003969 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIKN-CRFVCAKAEDV 661 (783)
Q Consensus 589 L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~ngl~n-v~f~~gDaed~ 661 (783)
....+.....+.++.+|||||||+|.+++.+++.. .+|+|||++ ++++.|+++++.+++.+ ++|+++|++++
T Consensus 54 ~~~~i~~~~~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~ 127 (349)
T 3q7e_A 54 YRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEV 127 (349)
T ss_dssp HHHHHHTCHHHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTC
T ss_pred HHHHHHhccccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHc
Confidence 33444444445578899999999999999999985 599999999 59999999999999965 99999998753
No 330
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=98.57 E-value=1.2e-07 Score=102.42 Aligned_cols=71 Identities=21% Similarity=0.320 Sum_probs=59.8
Q ss_pred HHhhhccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHc-------CC----CcEEEEEcc
Q 003969 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEIN-------GI----KNCRFVCAK 657 (783)
Q Consensus 592 ~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~n-------gl----~nv~f~~gD 657 (783)
.++.++.+.++.+|||+|||+|.+++.|++.. .+|+|+|+++.+++.|++|+... ++ .+++|+++|
T Consensus 96 ~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d 175 (336)
T 2b25_A 96 MILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKD 175 (336)
T ss_dssp HHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESC
T ss_pred HHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECC
Confidence 34455567788999999999999999999874 79999999999999999999853 22 579999999
Q ss_pred HHHHH
Q 003969 658 AEDVM 662 (783)
Q Consensus 658 aed~l 662 (783)
+.+.+
T Consensus 176 ~~~~~ 180 (336)
T 2b25_A 176 ISGAT 180 (336)
T ss_dssp TTCCC
T ss_pred hHHcc
Confidence 87653
No 331
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=98.56 E-value=1.7e-07 Score=91.77 Aligned_cols=69 Identities=19% Similarity=0.182 Sum_probs=60.9
Q ss_pred HhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 593 i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
+.+++...++.+|||+|||+|.+++.|++...+|+|+|+++.+++.|++++..+++.++.++++|+.+.
T Consensus 24 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~ 92 (199)
T 2xvm_A 24 VLEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNL 92 (199)
T ss_dssp HHHHTTTSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGC
T ss_pred HHHHhhccCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhC
Confidence 344445556789999999999999999998889999999999999999999999998899999998763
No 332
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=98.56 E-value=5.4e-08 Score=103.29 Aligned_cols=73 Identities=8% Similarity=0.043 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCE----EEEEeCCHHHHHHHHHHHHHcCCCcEEEEEc
Q 003969 581 VNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGM----VIGIEMNASAVSDAHRNAEINGIKNCRFVCA 656 (783)
Q Consensus 581 vN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~----VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~g 656 (783)
++..... .+++.+.+.++.+|||+|||+|.++..|++.+.+ |+|||+++.+++.|++++ ..+++++++
T Consensus 26 ~d~~i~~----~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~----~~~v~~i~~ 97 (279)
T 3uzu_A 26 VDHGVID----AIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF----GELLELHAG 97 (279)
T ss_dssp CCHHHHH----HHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH----GGGEEEEES
T ss_pred CCHHHHH----HHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc----CCCcEEEEC
Confidence 4554444 4555566778899999999999999999998877 999999999999999993 458999999
Q ss_pred cHHHH
Q 003969 657 KAEDV 661 (783)
Q Consensus 657 Daed~ 661 (783)
|+.++
T Consensus 98 D~~~~ 102 (279)
T 3uzu_A 98 DALTF 102 (279)
T ss_dssp CGGGC
T ss_pred ChhcC
Confidence 99864
No 333
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=98.56 E-value=8e-08 Score=95.38 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=56.3
Q ss_pred CCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
++.+|||+|||+|.+++.++.. ..+|+|+|+++.+++.|++|+..+++.+++|+++|+.+.
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~ 127 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEF 127 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTS
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhC
Confidence 4679999999999999999987 579999999999999999999999998899999998764
No 334
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=98.55 E-value=1.7e-07 Score=94.67 Aligned_cols=62 Identities=26% Similarity=0.349 Sum_probs=55.3
Q ss_pred CCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcC-----CCcEEEEEccHHH
Q 003969 599 LGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEING-----IKNCRFVCAKAED 660 (783)
Q Consensus 599 ~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ng-----l~nv~f~~gDaed 660 (783)
+.++.+|||+|||+|.++..|++.. .+|+|+|+++.+++.|++|+..++ ..++.++++|+..
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 144 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM 144 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCccc
Confidence 5678899999999999999999874 599999999999999999998876 4689999999763
No 335
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=98.52 E-value=2.6e-07 Score=97.70 Aligned_cols=64 Identities=11% Similarity=0.134 Sum_probs=54.6
Q ss_pred CCCCeEEEecCCcCHHHHHHhhh-CCEEEEEeCCHHHHHHHHHHHHHc--C---------CCcEEEEEccHHHHHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEIN--G---------IKNCRFVCAKAEDVMGS 664 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~-~~~VigVE~s~~AIe~Ak~Na~~n--g---------l~nv~f~~gDaed~l~~ 664 (783)
..+.+|||||||+|.+++.+++. ..+|++||+++.+++.|++|+ .. + -.+++++++|+.+++..
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~ 149 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN 149 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc
Confidence 35679999999999999999988 469999999999999999998 33 2 25799999999887653
No 336
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=98.52 E-value=1.9e-07 Score=93.80 Aligned_cols=72 Identities=11% Similarity=0.113 Sum_probs=60.4
Q ss_pred HHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHH
Q 003969 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAED 660 (783)
Q Consensus 585 ~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~~gDaed 660 (783)
..+.+|..+..++. +..+|||||||+|.+++.++.. ..+|+|+|+++.|++.|++|+..+|+. +++| .|...
T Consensus 35 ~ld~fY~~~~~~l~--~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~ 109 (200)
T 3fzg_A 35 TLNDFYTYVFGNIK--HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKES 109 (200)
T ss_dssp GHHHHHHHHHHHSC--CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHH
T ss_pred hHHHHHHHHHhhcC--CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccc
Confidence 34667888888874 4679999999999999999766 359999999999999999999999997 6877 44433
No 337
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=98.52 E-value=5.7e-08 Score=97.43 Aligned_cols=66 Identities=15% Similarity=0.160 Sum_probs=55.7
Q ss_pred ccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHc------------CCCcEEEEEccHHHHH
Q 003969 597 ADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN------------GIKNCRFVCAKAEDVM 662 (783)
Q Consensus 597 l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~n------------gl~nv~f~~gDaed~l 662 (783)
+.+.++.+|||+|||+|.+++.|++.+.+|+|||+|+.||+.|++++... ...+++|+++|+.++.
T Consensus 18 l~~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~ 95 (203)
T 1pjz_A 18 LNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT 95 (203)
T ss_dssp HCCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST
T ss_pred cccCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCC
Confidence 34557789999999999999999999889999999999999999876431 2357999999987753
No 338
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=98.52 E-value=1.2e-07 Score=94.68 Aligned_cols=79 Identities=14% Similarity=0.125 Sum_probs=65.0
Q ss_pred CCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 581 VNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 581 vN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
.+......+...+...+...++.+|||+|||+|.++..|++.+.+|+|||+++.+++.|++++..++ +++|+++|+.+
T Consensus 31 ~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~ 108 (216)
T 3ofk_A 31 DNPFERERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWS--HISWAATDILQ 108 (216)
T ss_dssp TCHHHHHHHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTCS--SEEEEECCTTT
T ss_pred cCHhHHHHHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccCC--CeEEEEcchhh
Confidence 3444445555556656666677899999999999999999998899999999999999999976543 89999999876
Q ss_pred H
Q 003969 661 V 661 (783)
Q Consensus 661 ~ 661 (783)
+
T Consensus 109 ~ 109 (216)
T 3ofk_A 109 F 109 (216)
T ss_dssp C
T ss_pred C
Confidence 4
No 339
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=98.51 E-value=1.3e-07 Score=98.12 Aligned_cols=71 Identities=15% Similarity=0.167 Sum_probs=61.5
Q ss_pred HHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 589 L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
+...+++.+.+.++.+|||+|||+|.++..|++.+.+|+|||+++.+++.|++|+.. ..+++++++|+.++
T Consensus 18 ~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~--~~~v~~~~~D~~~~ 88 (244)
T 1qam_A 18 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDILQF 88 (244)
T ss_dssp HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGGGC
T ss_pred HHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhcc--CCCeEEEEChHHhC
Confidence 445566777777888999999999999999999999999999999999999998753 36899999998763
No 340
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=98.51 E-value=2.1e-07 Score=93.38 Aligned_cols=72 Identities=10% Similarity=0.122 Sum_probs=61.3
Q ss_pred HHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCC-----cEEEEEccHH
Q 003969 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIK-----NCRFVCAKAE 659 (783)
Q Consensus 588 ~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~-----nv~f~~gDae 659 (783)
..+..+.+++...++.+|||+|||+|.++..|++.. .+|+|||+++.+++.|++++..+++. +++|+++|+.
T Consensus 16 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 94 (217)
T 3jwh_A 16 QRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALT 94 (217)
T ss_dssp HHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTT
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcc
Confidence 344555555555677899999999999999999875 59999999999999999999888875 7999999974
No 341
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=98.51 E-value=2.4e-07 Score=94.97 Aligned_cols=71 Identities=21% Similarity=0.313 Sum_probs=61.0
Q ss_pred HHHhhhc-cCCCCCeEEEecCCcCHHHHHHhhhCC-EEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEEccHHHH
Q 003969 591 SLGGDWA-DLGPDTLLFDVCCGTGTIGLTLAHRVG-MVIGIEMNASAVSDAHRNAEINGIKN-CRFVCAKAEDV 661 (783)
Q Consensus 591 ~~i~~~l-~~~~g~~VLDLgCGtGti~l~LA~~~~-~VigVE~s~~AIe~Ak~Na~~ngl~n-v~f~~gDaed~ 661 (783)
..++..+ .+.++.+|||+|||+|.+++.|++... +|+|||+++.+++.|++++..+++.+ ++|+++|+.++
T Consensus 35 ~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 108 (257)
T 3f4k_A 35 RKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNL 108 (257)
T ss_dssp HHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred HHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhC
Confidence 3344444 456778999999999999999999865 99999999999999999999999965 99999998653
No 342
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=98.51 E-value=2.4e-07 Score=94.61 Aligned_cols=68 Identities=25% Similarity=0.332 Sum_probs=62.6
Q ss_pred HhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 593 i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
+++++.+.++.+|||+|||+|.++..++..+.+|+|+|+++.+++.|++++..+++.++.|+++|+++
T Consensus 13 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 80 (239)
T 1xxl_A 13 MIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAES 80 (239)
T ss_dssp HHHHHTCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTB
T ss_pred HHHHhCcCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEeccccc
Confidence 45566777889999999999999999999989999999999999999999999999899999999875
No 343
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=98.51 E-value=3.2e-07 Score=91.71 Aligned_cols=70 Identities=21% Similarity=0.281 Sum_probs=61.7
Q ss_pred HHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 591 SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 591 ~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
..+++.+...++.+|||+|||+|.+++.|++.. .+|+|+|+++.+++.|++++..+++.++.++++|+..
T Consensus 67 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 139 (215)
T 2yxe_A 67 GMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTL 139 (215)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGG
T ss_pred HHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCccc
Confidence 344555566788899999999999999999986 7999999999999999999999999899999999853
No 344
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=98.49 E-value=1.3e-07 Score=92.22 Aligned_cols=67 Identities=18% Similarity=0.145 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 582 NTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 582 N~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
.+..++.|...+ .... .++.+|||+|||+|.+++.|++.+ +|+|||+++.|++. ..+++|+++|+.+
T Consensus 6 P~~~~~~l~~~l-~~~~-~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~---------~~~~~~~~~d~~~ 72 (170)
T 3q87_B 6 PGEDTYTLMDAL-EREG-LEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES---------HRGGNLVRADLLC 72 (170)
T ss_dssp CCHHHHHHHHHH-HHHT-CCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT---------CSSSCEEECSTTT
T ss_pred cCccHHHHHHHH-Hhhc-CCCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc---------ccCCeEEECChhh
Confidence 334556666653 2211 356799999999999999999999 99999999999988 3468899999875
No 345
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=98.48 E-value=2.2e-07 Score=92.82 Aligned_cols=68 Identities=22% Similarity=0.211 Sum_probs=61.0
Q ss_pred HhhhccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 593 i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
+++.+.+.++.+|||+|||+|.++..+++.. .+|+|||+++.+++.|++++..+++.+++|+++|+.+
T Consensus 29 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~ 99 (219)
T 3dh0_A 29 VLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENK 99 (219)
T ss_dssp HHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTB
T ss_pred HHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeccccc
Confidence 4444566778899999999999999999886 7999999999999999999999999899999999875
No 346
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=98.48 E-value=3.6e-07 Score=106.07 Aligned_cols=65 Identities=23% Similarity=0.388 Sum_probs=60.0
Q ss_pred CCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~~l 665 (783)
.+.+|||||||+|.++..||+.+..|+|||+++.+|+.|+..+..+|..++.|.+++++++....
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~ 130 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAAL 130 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHC
T ss_pred CCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhc
Confidence 45799999999999999999999999999999999999999999888778999999999987543
No 347
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=98.48 E-value=1.8e-07 Score=97.73 Aligned_cols=68 Identities=6% Similarity=-0.041 Sum_probs=55.9
Q ss_pred HHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCE--EEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 590 YSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGM--VIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 590 ~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~--VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
...+++.+.+.++.+|||+|||+|.++. |++ +.+ |+|||+++.+++.|++++.. ..+++++++|+.++
T Consensus 10 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~--~~~v~~i~~D~~~~ 79 (252)
T 1qyr_A 10 IDSIVSAINPQKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFL--GPKLTIYQQDAMTF 79 (252)
T ss_dssp HHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTT--GGGEEEECSCGGGC
T ss_pred HHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhcc--CCceEEEECchhhC
Confidence 3445555566778899999999999999 764 567 99999999999999988653 25899999999874
No 348
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=98.48 E-value=3.2e-07 Score=99.05 Aligned_cols=73 Identities=30% Similarity=0.401 Sum_probs=60.1
Q ss_pred HHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHH
Q 003969 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAED 660 (783)
Q Consensus 587 e~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~~gDaed 660 (783)
......+...+...++.+|||+|||+|.+++.+++.+ .+|+|||++ .+++.|+++++.+++. +++++++|+++
T Consensus 24 ~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 98 (328)
T 1g6q_1 24 LSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLED 98 (328)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred HHHHHHHHhhHhhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhh
Confidence 3334444444445577899999999999999999885 599999999 6999999999999995 59999999765
No 349
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=98.48 E-value=2.5e-07 Score=98.74 Aligned_cols=63 Identities=14% Similarity=0.154 Sum_probs=54.4
Q ss_pred CCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHH--cCC--CcEEEEEccHHHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEI--NGI--KNCRFVCAKAEDVMG 663 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~--ngl--~nv~f~~gDaed~l~ 663 (783)
.+.+|||||||+|.++..+++. ..+|++||+++.+++.|++|+.. +++ .+++++++|+.++++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~ 158 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVR 158 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGG
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh
Confidence 4579999999999999999987 47999999999999999999764 333 579999999987653
No 350
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=98.47 E-value=4e-07 Score=97.65 Aligned_cols=65 Identities=9% Similarity=0.085 Sum_probs=56.3
Q ss_pred CCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHH--cCC--CcEEEEEccHHHHHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEI--NGI--KNCRFVCAKAEDVMGS 664 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~--ngl--~nv~f~~gDaed~l~~ 664 (783)
..+.+|||||||+|.+++.++++. .+|++||+++.+++.|++|+.. +++ .+++++++|+.++++.
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~ 164 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ 164 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhh
Confidence 356799999999999999999874 7999999999999999999765 344 5799999999987653
No 351
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=98.46 E-value=5.8e-07 Score=91.94 Aligned_cols=71 Identities=21% Similarity=0.271 Sum_probs=59.8
Q ss_pred HHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 590 YSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 590 ~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
+..++......++.+|||+|||+|.+++.|++...+|+|||+++.+++.|++++..+++ ++.++++|+.++
T Consensus 30 ~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~ 100 (252)
T 1wzn_A 30 VEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEI 100 (252)
T ss_dssp HHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGC
T ss_pred HHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEECChhhc
Confidence 33334434445678999999999999999999988999999999999999999988876 699999998763
No 352
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=98.46 E-value=5.3e-07 Score=93.31 Aligned_cols=78 Identities=27% Similarity=0.334 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHH
Q 003969 583 TLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAED 660 (783)
Q Consensus 583 ~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~-~~~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~~gDaed 660 (783)
......+...+++.+.+.++.+|||+|||+|.+++.|++. ..+|+|||+++.+++.|++++..+++. ++.|+++|+.+
T Consensus 43 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 122 (273)
T 3bus_A 43 DDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMD 122 (273)
T ss_dssp HHHHHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECcccc
Confidence 4556667788888888888899999999999999999986 579999999999999999999998985 69999999876
No 353
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=98.45 E-value=2.3e-07 Score=94.06 Aligned_cols=62 Identities=21% Similarity=0.324 Sum_probs=55.4
Q ss_pred CCCCCeEEEecCCcCHHHHHHhhhC--------CEEEEEeCCHHHHHHHHHHHHHcC-----CCcEEEEEccHHH
Q 003969 599 LGPDTLLFDVCCGTGTIGLTLAHRV--------GMVIGIEMNASAVSDAHRNAEING-----IKNCRFVCAKAED 660 (783)
Q Consensus 599 ~~~g~~VLDLgCGtGti~l~LA~~~--------~~VigVE~s~~AIe~Ak~Na~~ng-----l~nv~f~~gDaed 660 (783)
+.++.+|||+|||+|.++..|++.. .+|+++|+++.+++.|++|+..++ ..+++++++|+.+
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 156 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK 156 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc
Confidence 5577899999999999999999863 499999999999999999998877 6789999999875
No 354
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=98.45 E-value=3.5e-07 Score=91.63 Aligned_cols=74 Identities=20% Similarity=0.337 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 584 ~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
...+.+...+...+. ++.+|||+|||+|.+++.+++...+|+|+|+++.+++.|++++..++ .+++++++|+.+
T Consensus 23 ~~~~~~~~~l~~~~~--~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~ 96 (227)
T 1ve3_A 23 SRIETLEPLLMKYMK--KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARK 96 (227)
T ss_dssp HHHHHHHHHHHHSCC--SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTS
T ss_pred HHHHHHHHHHHHhcC--CCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhc
Confidence 445556666666554 47799999999999999999998899999999999999999998887 689999999875
No 355
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=98.45 E-value=5.2e-07 Score=97.45 Aligned_cols=64 Identities=16% Similarity=0.111 Sum_probs=55.4
Q ss_pred CCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHH--cCC--CcEEEEEccHHHHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEI--NGI--KNCRFVCAKAEDVMGS 664 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~--ngl--~nv~f~~gDaed~l~~ 664 (783)
.+.+|||||||+|.+++.+++. ..+|++||+++.+++.|++|+.. +++ .+++++++|+.++++.
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~ 185 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN 185 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhh
Confidence 4579999999999999999987 47999999999999999999865 333 5799999999987653
No 356
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=98.45 E-value=2.1e-07 Score=102.80 Aligned_cols=68 Identities=21% Similarity=0.171 Sum_probs=57.9
Q ss_pred HhhhccCCCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHHH
Q 003969 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAEDV 661 (783)
Q Consensus 593 i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~~gDaed~ 661 (783)
|.......+|.+|||||||+|.+++.+|+.+ ++|+|||.++ +++.|+++++.||+. +|++++++++++
T Consensus 75 i~~~~~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~ 144 (376)
T 4hc4_A 75 ILRNWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETV 144 (376)
T ss_dssp HHTTHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTC
T ss_pred HHhCHHhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeee
Confidence 3333344578899999999999999999885 6899999996 889999999999995 599999998764
No 357
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=98.45 E-value=4.1e-07 Score=94.29 Aligned_cols=69 Identities=28% Similarity=0.479 Sum_probs=60.0
Q ss_pred Hhhhcc-CCCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHHH
Q 003969 593 GGDWAD-LGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAEDV 661 (783)
Q Consensus 593 i~~~l~-~~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~~gDaed~ 661 (783)
++..+. +.++.+|||+|||+|.+++.+++.. .+|+|||+++.+++.|++++..+++. +++|+++|+.++
T Consensus 37 ~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 108 (267)
T 3kkz_A 37 ALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDL 108 (267)
T ss_dssp HHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred HHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhC
Confidence 444444 5678899999999999999999985 49999999999999999999999995 599999998653
No 358
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=98.43 E-value=4.9e-07 Score=98.27 Aligned_cols=74 Identities=22% Similarity=0.327 Sum_probs=63.3
Q ss_pred HHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHHH
Q 003969 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAEDV 661 (783)
Q Consensus 587 e~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gDaed~ 661 (783)
......+.+.+...++.+|||||||+|.+++.+++.+ .+|+|||+++ +++.|+++++.+++ .+++++++|++++
T Consensus 50 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 125 (340)
T 2fyt_A 50 ESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEV 125 (340)
T ss_dssp HHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTS
T ss_pred HHHHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHh
Confidence 3344556666666788999999999999999999885 5999999996 99999999999999 6899999998763
No 359
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=98.42 E-value=2.5e-07 Score=100.33 Aligned_cols=78 Identities=13% Similarity=0.125 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC-------CEEEEEeCCHHHHHHHHHHHHHcCCCcEEE
Q 003969 581 VNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-------GMVIGIEMNASAVSDAHRNAEINGIKNCRF 653 (783)
Q Consensus 581 vN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~-------~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f 653 (783)
+.......+...+..+....++.+|||+|||+|.+++.+++.. .+|+|+|+++.+++.|+.|+..+|+ ++.+
T Consensus 110 TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i 188 (344)
T 2f8l_A 110 TPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTL 188 (344)
T ss_dssp CCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEE
T ss_pred ChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-CceE
Confidence 4444444433333222244466899999999999999998774 6899999999999999999999998 7889
Q ss_pred EEccHH
Q 003969 654 VCAKAE 659 (783)
Q Consensus 654 ~~gDae 659 (783)
+++|+.
T Consensus 189 ~~~D~l 194 (344)
T 2f8l_A 189 LHQDGL 194 (344)
T ss_dssp EESCTT
T ss_pred EECCCC
Confidence 999864
No 360
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=98.42 E-value=2.8e-07 Score=96.07 Aligned_cols=63 Identities=16% Similarity=0.232 Sum_probs=53.2
Q ss_pred CCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHH----------c-------CCCcEEEEEccHHHH
Q 003969 599 LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEI----------N-------GIKNCRFVCAKAEDV 661 (783)
Q Consensus 599 ~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~----------n-------gl~nv~f~~gDaed~ 661 (783)
..++.+|||+|||+|..++.||+.+.+|+|||+++.||+.|++.+.. + ...+++|+++|+.++
T Consensus 66 ~~~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l 145 (252)
T 2gb4_A 66 GQSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL 145 (252)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred CCCCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence 34678999999999999999999988999999999999999876431 0 125799999999875
No 361
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=98.42 E-value=4e-07 Score=93.56 Aligned_cols=63 Identities=14% Similarity=-0.010 Sum_probs=55.8
Q ss_pred CCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMG 663 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~ 663 (783)
.+|.+|||||||+|.++..+++.. .+|+|||+++.+++.|++++...+. ++.++.+|+.+++.
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~-~~~~~~~~a~~~~~ 122 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH-KVIPLKGLWEDVAP 122 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSS-EEEEEESCHHHHGG
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCC-ceEEEeehHHhhcc
Confidence 468899999999999999999874 7899999999999999999887664 69999999988654
No 362
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=98.42 E-value=6.1e-07 Score=94.69 Aligned_cols=64 Identities=6% Similarity=0.046 Sum_probs=55.2
Q ss_pred CCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHH--cCC--CcEEEEEccHHHHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEI--NGI--KNCRFVCAKAEDVMGS 664 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~--ngl--~nv~f~~gDaed~l~~ 664 (783)
.+.+|||||||+|.++..++++ ..+|++||+++.+++.|++|+.. +++ .+++++.+|+.++++.
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~ 144 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK 144 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh
Confidence 4579999999999999999987 47999999999999999999754 234 5799999999987653
No 363
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=98.42 E-value=7.2e-07 Score=93.30 Aligned_cols=77 Identities=19% Similarity=0.191 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhh-hCCEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHH
Q 003969 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH-RVGMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAED 660 (783)
Q Consensus 584 ~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~-~~~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gDaed 660 (783)
.....++..+++.+.+.++.+|||+|||+|.+++.+++ ...+|+|||+++.+++.|++++...++ .++.++++|+.+
T Consensus 47 ~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 125 (287)
T 1kpg_A 47 EAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ 125 (287)
T ss_dssp HHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG
T ss_pred HHHHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh
Confidence 34455677788888888889999999999999999994 467999999999999999999988887 479999999865
No 364
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=98.41 E-value=4.7e-07 Score=92.32 Aligned_cols=63 Identities=14% Similarity=0.005 Sum_probs=55.8
Q ss_pred CCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMG 663 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~ 663 (783)
.++.+|||||||+|.+++.|++.. .+|+|||+++.+++.|++++..++ .++.++++|+.+++.
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~ 122 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAP 122 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGG
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC-CCeEEEecCHHHhhc
Confidence 467899999999999999998864 499999999999999999988766 579999999998653
No 365
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=98.41 E-value=1.2e-06 Score=94.27 Aligned_cols=65 Identities=15% Similarity=0.152 Sum_probs=55.6
Q ss_pred CCCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHH-c-C---CCcEEEEEccHHHHHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEI-N-G---IKNCRFVCAKAEDVMGS 664 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~-n-g---l~nv~f~~gDaed~l~~ 664 (783)
..+.+|||||||+|.++..+++. ..+|++||+++.+++.|++++.. + + -.+++++++|+.++++.
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~ 147 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER 147 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHh
Confidence 34579999999999999999987 47999999999999999999764 2 2 35799999999987653
No 366
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=98.41 E-value=5.3e-07 Score=89.32 Aligned_cols=73 Identities=11% Similarity=0.116 Sum_probs=62.4
Q ss_pred HHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHH
Q 003969 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAED 660 (783)
Q Consensus 587 e~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~-~~~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~~gDaed 660 (783)
..+...+++.+...++ +|||+|||+|.++..|++. ..+|+|+|+++.+++.|++++..+++. +++|+++|+.+
T Consensus 30 ~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 104 (219)
T 3dlc_A 30 PIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHN 104 (219)
T ss_dssp HHHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTB
T ss_pred HHHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHH
Confidence 3455556666665555 9999999999999999997 569999999999999999999999984 79999999875
No 367
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=98.40 E-value=7.8e-07 Score=94.66 Aligned_cols=77 Identities=23% Similarity=0.230 Sum_probs=67.6
Q ss_pred HHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHHH
Q 003969 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAEDV 661 (783)
Q Consensus 585 ~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~-~~~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~~gDaed~ 661 (783)
....++..+++.+.+.++.+|||+|||+|.+++.+++. ..+|+|||+++.+++.|++++...++. ++.++++|+.++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 152 (318)
T 2fk8_A 74 AQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF 152 (318)
T ss_dssp HHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC
T ss_pred HHHHHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC
Confidence 34556777888888888899999999999999999987 679999999999999999999988884 599999998764
No 368
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=98.40 E-value=6.1e-07 Score=93.18 Aligned_cols=75 Identities=27% Similarity=0.396 Sum_probs=64.9
Q ss_pred HHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 587 e~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
..+...+.....+.++.+|||||||+|.++..|++. ..+|+|||+++.+++.|++++..+++.++.|+++|+.++
T Consensus 23 ~~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~ 99 (276)
T 3mgg_A 23 ETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSL 99 (276)
T ss_dssp CHHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGC
T ss_pred HHHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccC
Confidence 344455555556678899999999999999999998 579999999999999999999999999999999998863
No 369
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.38 E-value=5.6e-07 Score=79.52 Aligned_cols=70 Identities=20% Similarity=0.254 Sum_probs=55.6
Q ss_pred ccEEEeCCC----cccCH----HHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEe
Q 003969 166 LSKCLVHLP----RKWHS----DNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVAN 236 (783)
Q Consensus 166 ~~i~V~nLp----~~~~~----~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~ 236 (783)
-.|.|...| ..|-. .+|...|.+|| |..+++...+ +||+|++.+.|.+||+ |||+.+.||.|+|+.
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~l 82 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LNGKELLNRTITIAL 82 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GTTCEETTEEEEEEE
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cCCeEeCCeEEEEEe
Confidence 345555555 23333 67889999997 7777766643 8999999999999999 999999999999998
Q ss_pred cCCC
Q 003969 237 VVPR 240 (783)
Q Consensus 237 A~pr 240 (783)
+.|.
T Consensus 83 kt~d 86 (91)
T 2dnr_A 83 KSPS 86 (91)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8764
No 370
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=98.37 E-value=1e-06 Score=92.52 Aligned_cols=77 Identities=10% Similarity=-0.001 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhhhc----cCCCCCeEEEecCCcCHHHHHHhhh-CCEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEcc
Q 003969 584 LAAEKLYSLGGDWA----DLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAK 657 (783)
Q Consensus 584 ~~ae~L~~~i~~~l----~~~~g~~VLDLgCGtGti~l~LA~~-~~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gD 657 (783)
.....++..+++.+ .+.++.+|||+|||+|.++..|++. ..+|+|||+++.+++.|++++...++ .+++|+++|
T Consensus 61 ~~~~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d 140 (297)
T 2o57_A 61 EASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGS 140 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECC
T ss_pred HHHHHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcC
Confidence 34455566666666 6678899999999999999999987 56999999999999999999998898 579999999
Q ss_pred HHH
Q 003969 658 AED 660 (783)
Q Consensus 658 aed 660 (783)
+.+
T Consensus 141 ~~~ 143 (297)
T 2o57_A 141 FLE 143 (297)
T ss_dssp TTS
T ss_pred ccc
Confidence 876
No 371
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=98.36 E-value=1.7e-07 Score=98.65 Aligned_cols=72 Identities=11% Similarity=0.028 Sum_probs=57.4
Q ss_pred CCccccCCHHHH-HHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHc
Q 003969 575 PTAFFQVNTLAA-EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEIN 646 (783)
Q Consensus 575 p~sFfQvN~~~a-e~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~n 646 (783)
...|+|.+.... ......+++.+.+.++.+|||||||+|.+++.|++++.+|+|||+++.|++.|++|+..+
T Consensus 18 a~~f~~~~~~~~~~~~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~ 90 (261)
T 3iv6_A 18 GNQFWTIGRVAARPSDRENDIFLENIVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADR 90 (261)
T ss_dssp TTHHHHTSCGGGSCCHHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSS
T ss_pred HHHHHHHhhccccHHHHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc
Confidence 345555544332 234455667777888999999999999999999999999999999999999999987543
No 372
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=98.36 E-value=3.8e-07 Score=97.39 Aligned_cols=63 Identities=13% Similarity=0.151 Sum_probs=52.4
Q ss_pred CCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHHcC-----CCcEEEEEccHHHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEING-----IKNCRFVCAKAEDVMG 663 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~ng-----l~nv~f~~gDaed~l~ 663 (783)
...+|||||||+|.++..+++. ..+|++||+++.+++.|++++...+ -.+++++.+|+.+++.
T Consensus 83 ~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~ 152 (294)
T 3adn_A 83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVN 152 (294)
T ss_dssp TCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---
T ss_pred CCCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHh
Confidence 4579999999999999999987 4799999999999999999987542 3479999999876553
No 373
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=98.36 E-value=4.5e-07 Score=104.70 Aligned_cols=81 Identities=15% Similarity=0.169 Sum_probs=62.3
Q ss_pred CCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC--------------------CEEEEEeCCHH
Q 003969 575 PTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--------------------GMVIGIEMNAS 634 (783)
Q Consensus 575 p~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--------------------~~VigVE~s~~ 634 (783)
.+.|| +.......|. +++.+.++.+|||.|||+|.|.+.+++.. ..++|+|+++.
T Consensus 148 ~G~fy-TP~~iv~~mv----~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~ 222 (541)
T 2ar0_A 148 AGQYF-TPRPLIKTII----HLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPG 222 (541)
T ss_dssp --CCC-CCHHHHHHHH----HHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHH
T ss_pred CCeee-CCHHHHHHHH----HHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHH
Confidence 45565 4555555544 44455677899999999999999887642 37999999999
Q ss_pred HHHHHHHHHHHcCCCc-----EEEEEccHHH
Q 003969 635 AVSDAHRNAEINGIKN-----CRFVCAKAED 660 (783)
Q Consensus 635 AIe~Ak~Na~~ngl~n-----v~f~~gDaed 660 (783)
+++.|+.|+..+|+.+ +.++++|+..
T Consensus 223 ~~~lA~~nl~l~gi~~~~~~~~~I~~gDtL~ 253 (541)
T 2ar0_A 223 TRRLALMNCLLHDIEGNLDHGGAIRLGNTLG 253 (541)
T ss_dssp HHHHHHHHHHTTTCCCBGGGTBSEEESCTTS
T ss_pred HHHHHHHHHHHhCCCccccccCCeEeCCCcc
Confidence 9999999999999875 7888888653
No 374
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=98.35 E-value=1.9e-07 Score=93.76 Aligned_cols=64 Identities=20% Similarity=0.331 Sum_probs=53.4
Q ss_pred ccCCCCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHH----HHHcCCCcEEEEEccHHH
Q 003969 597 ADLGPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRN----AEINGIKNCRFVCAKAED 660 (783)
Q Consensus 597 l~~~~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~N----a~~ngl~nv~f~~gDaed 660 (783)
+.+.++.+|||+|||+|.+++.|++. ..+|+|||+++.|++.+.++ +...++.+++|+++|+.+
T Consensus 23 l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 92 (218)
T 3mq2_A 23 LRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAER 92 (218)
T ss_dssp HHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTT
T ss_pred hhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhh
Confidence 34567889999999999999999998 57999999999988864433 334677899999999876
No 375
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=98.35 E-value=1.1e-06 Score=92.04 Aligned_cols=61 Identities=28% Similarity=0.443 Sum_probs=56.1
Q ss_pred CCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHHHH
Q 003969 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAEDVM 662 (783)
Q Consensus 602 g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gDaed~l 662 (783)
+.+|||||||+|.+++.|++.+.+|+|||+++.+++.|++++..+++ .+++|+++|+.++.
T Consensus 69 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 130 (285)
T 4htf_A 69 KLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVA 130 (285)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTG
T ss_pred CCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhh
Confidence 67999999999999999999988999999999999999999998898 68999999998754
No 376
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=98.35 E-value=1e-06 Score=98.98 Aligned_cols=80 Identities=16% Similarity=0.168 Sum_probs=63.7
Q ss_pred CccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHH-------HHHHHHc
Q 003969 576 TAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDA-------HRNAEIN 646 (783)
Q Consensus 576 ~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~A-------k~Na~~n 646 (783)
..+-|..+... ..+++.+.+.++.+|||||||+|.+++.||+.+ .+|+|||+++.+++.| ++|+..+
T Consensus 221 ~~yGet~p~~v----~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~ 296 (433)
T 1u2z_A 221 YVYGELLPNFL----SDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLY 296 (433)
T ss_dssp GCCCCBCHHHH----HHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccccHHHH----HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHc
Confidence 34445554433 344455667788999999999999999999863 5899999999999999 9999999
Q ss_pred C--CCcEEEEEccHH
Q 003969 647 G--IKNCRFVCAKAE 659 (783)
Q Consensus 647 g--l~nv~f~~gDae 659 (783)
| +.|++|+++|..
T Consensus 297 Gl~~~nV~~i~gD~~ 311 (433)
T 1u2z_A 297 GMRLNNVEFSLKKSF 311 (433)
T ss_dssp TBCCCCEEEEESSCS
T ss_pred CCCCCceEEEEcCcc
Confidence 9 579999998643
No 377
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=98.35 E-value=7.3e-07 Score=91.32 Aligned_cols=77 Identities=18% Similarity=0.211 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhh-hccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 583 TLAAEKLYSLGGD-WADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 583 ~~~ae~L~~~i~~-~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
......+...+.. ...+.++.+|||+|||+|.+++.|++...+|+|+|+++.+++.|++++ ..+..++.|+++|+.+
T Consensus 20 ~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~ 97 (263)
T 2yqz_A 20 PEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARA 97 (263)
T ss_dssp HHHHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTS
T ss_pred hHHHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-hccCCceEEEEccccc
Confidence 4445555555543 224567789999999999999999998889999999999999999998 4455789999999875
No 378
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=98.35 E-value=9.6e-07 Score=100.51 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHH
Q 003969 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAED 660 (783)
Q Consensus 584 ~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gDaed 660 (783)
...+.+...+++.+...++.+|||+|||+|.+++.+++.. .+|+|||+++ +++.|+++++.+|+ .+++|+++|+++
T Consensus 141 ~~t~~~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~ 218 (480)
T 3b3j_A 141 VRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEE 218 (480)
T ss_dssp HHHHHHHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred HhHHHHHHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhh
Confidence 3455666777777766678899999999999999999874 5999999998 99999999999999 679999999876
No 379
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=98.34 E-value=1.6e-06 Score=92.79 Aligned_cols=64 Identities=5% Similarity=0.012 Sum_probs=54.3
Q ss_pred CCCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHH----cCCCcEEEEEccHHHHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEI----NGIKNCRFVCAKAEDVMG 663 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~----ngl~nv~f~~gDaed~l~ 663 (783)
..+.+|||||||+|.++..+++. ..+|++||+++.+++.|++++.. ....+++++.+|+.+++.
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 163 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVR 163 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHH
Confidence 45679999999999999999987 46999999999999999998742 123579999999988754
No 380
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=98.34 E-value=4.2e-07 Score=102.23 Aligned_cols=78 Identities=22% Similarity=0.298 Sum_probs=61.8
Q ss_pred ccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh---------------CCEEEEEeCCHHHHHHHHH
Q 003969 577 AFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---------------VGMVIGIEMNASAVSDAHR 641 (783)
Q Consensus 577 sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~---------------~~~VigVE~s~~AIe~Ak~ 641 (783)
.|| +.+.....|. +++.+..+.+|||+|||+|.+.+.+++. ...++|+|+++.+++.|+.
T Consensus 152 ~fy-TP~~v~~~mv----~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~ 226 (445)
T 2okc_A 152 QYF-TPRPLIQAMV----DCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASM 226 (445)
T ss_dssp GGC-CCHHHHHHHH----HHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHH
T ss_pred ccc-CcHHHHHHHH----HHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHH
Confidence 344 5555554444 4445567789999999999999998875 2579999999999999999
Q ss_pred HHHHcCCC--cEEEEEccHH
Q 003969 642 NAEINGIK--NCRFVCAKAE 659 (783)
Q Consensus 642 Na~~ngl~--nv~f~~gDae 659 (783)
|+..+|+. ++.++++|+.
T Consensus 227 nl~l~g~~~~~~~i~~gD~l 246 (445)
T 2okc_A 227 NLYLHGIGTDRSPIVCEDSL 246 (445)
T ss_dssp HHHHTTCCSSCCSEEECCTT
T ss_pred HHHHhCCCcCCCCEeeCCCC
Confidence 99999985 6788888864
No 381
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=98.33 E-value=1.8e-06 Score=91.33 Aligned_cols=65 Identities=12% Similarity=0.025 Sum_probs=55.8
Q ss_pred CCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcC----CCcEEEEEccHHHHHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEING----IKNCRFVCAKAEDVMGS 664 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ng----l~nv~f~~gDaed~l~~ 664 (783)
..+.+|||||||+|.++..+++.. .+|++||+++.+++.|++++..++ ..+++++.+|+.+++..
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~ 147 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN 147 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHh
Confidence 356799999999999999999873 799999999999999999976542 35799999999987653
No 382
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=98.33 E-value=1.1e-06 Score=92.76 Aligned_cols=73 Identities=30% Similarity=0.522 Sum_probs=61.0
Q ss_pred HHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhh---hCCEEEEEeCCHHHHHHHHHHHHHc--CCCcEEEEEccHHHH
Q 003969 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAH---RVGMVIGIEMNASAVSDAHRNAEIN--GIKNCRFVCAKAEDV 661 (783)
Q Consensus 588 ~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~---~~~~VigVE~s~~AIe~Ak~Na~~n--gl~nv~f~~gDaed~ 661 (783)
.++..+..+.. .++.+|||||||+|.++..|++ ...+|+|||+++.+++.|++++..+ ...+++|+++|++++
T Consensus 24 ~~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~ 101 (299)
T 3g5t_A 24 DFYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDF 101 (299)
T ss_dssp HHHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCC
T ss_pred HHHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhC
Confidence 45566666543 4678999999999999999995 4689999999999999999999886 346899999999763
No 383
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=98.32 E-value=8.5e-07 Score=89.65 Aligned_cols=71 Identities=15% Similarity=0.195 Sum_probs=59.3
Q ss_pred HHHHHhhhcc-CCCCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 589 LYSLGGDWAD-LGPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 589 L~~~i~~~l~-~~~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
++..+..++. ..++.+|||+|||+|.++..|++. ..+|+|||+++.+++.|++++..++ ++.++++|+.+.
T Consensus 31 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~ 104 (234)
T 3dtn_A 31 FYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL--KVKYIEADYSKY 104 (234)
T ss_dssp HHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT--TEEEEESCTTTC
T ss_pred HHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC--CEEEEeCchhcc
Confidence 3455555554 456789999999999999999998 5799999999999999999976555 899999998763
No 384
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=98.32 E-value=4e-07 Score=91.03 Aligned_cols=62 Identities=16% Similarity=0.027 Sum_probs=53.1
Q ss_pred hhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 595 ~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
+.+...++.+|||+|||+|.++..|++...+|+|||+++.+++.|++++. .+++|+++|+.+
T Consensus 39 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~ 100 (220)
T 3hnr_A 39 EDVVNKSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP----KEFSITEGDFLS 100 (220)
T ss_dssp HHHHHTCCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSC----TTCCEESCCSSS
T ss_pred HHhhccCCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCC----CceEEEeCChhh
Confidence 33334467899999999999999999998899999999999999998854 468899998765
No 385
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=98.31 E-value=4.3e-06 Score=85.19 Aligned_cols=61 Identities=25% Similarity=0.335 Sum_probs=54.2
Q ss_pred CCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHH
Q 003969 599 LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662 (783)
Q Consensus 599 ~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l 662 (783)
+.++.+|||||||+|.++..|++.+.+|+|||+++.+++.|++++ ...+++|+++|+.+..
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~ 114 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKEN---TAANISYRLLDGLVPE 114 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHS---CCTTEEEEECCTTCHH
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhC---cccCceEEECcccccc
Confidence 456789999999999999999999889999999999999999886 3358999999998754
No 386
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.31 E-value=1.3e-06 Score=81.52 Aligned_cols=74 Identities=11% Similarity=0.194 Sum_probs=63.9
Q ss_pred CCccccEEEeCCCcc-cCHHHHHHHhhhcc-ceeeEeeccCCccEEEEEeCC-HHHHHHHHHHHc--CCccCCceeEEEe
Q 003969 162 QDVELSKCLVHLPRK-WHSDNLKKFLADHG-ILYKSAKKKKGMTVGFVKFES-VEQLKNAVEELE--GISIGNKTLKVAN 236 (783)
Q Consensus 162 ~~~~~~i~V~nLp~~-~~~~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s-~Eea~kAIe~Ln--G~~~~Gr~L~V~~ 236 (783)
-.++.-|||+||++. ++.++|+.+|++|| |.++.+..+ ..+|||.|.+ +++|++|++.|| |..++|..+++..
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g--~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG--AKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT--CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC--CCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 466888999999999 99999999999995 777777665 4479999999 899999999994 8889998888753
Q ss_pred c
Q 003969 237 V 237 (783)
Q Consensus 237 A 237 (783)
.
T Consensus 93 L 93 (121)
T 1owx_A 93 L 93 (121)
T ss_dssp C
T ss_pred C
Confidence 3
No 387
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=98.31 E-value=1e-06 Score=88.95 Aligned_cols=60 Identities=18% Similarity=0.406 Sum_probs=55.1
Q ss_pred CCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
++.+|||+|||+|.++..|++.+.+|+|+|+++.+++.|++++..+++ ++.++++|+.++
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~ 96 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNL 96 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGC
T ss_pred CCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCC-CeEEEecccccC
Confidence 678999999999999999999988999999999999999999988777 789999998753
No 388
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=98.31 E-value=1.6e-06 Score=94.37 Aligned_cols=74 Identities=18% Similarity=0.192 Sum_probs=62.8
Q ss_pred HHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHHH
Q 003969 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAEDV 661 (783)
Q Consensus 587 e~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gDaed~ 661 (783)
......+.+.+...++.+|||||||+|.+++.+++.. .+|+|||+++ +++.|+++++.+++ .+++++++|++++
T Consensus 36 ~~y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~ 111 (348)
T 2y1w_A 36 GTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEV 111 (348)
T ss_dssp HHHHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTC
T ss_pred HHHHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhC
Confidence 3344556666666788999999999999999999875 5999999996 88999999999999 6799999998763
No 389
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=98.31 E-value=7.2e-07 Score=91.39 Aligned_cols=71 Identities=14% Similarity=0.105 Sum_probs=61.3
Q ss_pred HHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 589 L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~-~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
+...+++.+.+.++.+|||+|||+|.+++.|++. ..+|+|||+++.+++.|++++... .+++|+++|+.+.
T Consensus 43 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~ 114 (266)
T 3ujc_A 43 ATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN--NKIIFEANDILTK 114 (266)
T ss_dssp HHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTC
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccC
Confidence 3456677777788899999999999999999997 689999999999999999886544 6899999998763
No 390
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=98.30 E-value=9.7e-07 Score=95.14 Aligned_cols=64 Identities=14% Similarity=0.162 Sum_probs=55.4
Q ss_pred CCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHHc--CC--CcEEEEEccHHHHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEIN--GI--KNCRFVCAKAEDVMGS 664 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~n--gl--~nv~f~~gDaed~l~~ 664 (783)
...+|||||||+|.+++.+++. ..+|++||+++.+++.|++|+... ++ .+++++.+|+.+++..
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~ 177 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN 177 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh
Confidence 4579999999999999999987 379999999999999999997653 33 5799999999987653
No 391
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=98.29 E-value=1.5e-06 Score=88.97 Aligned_cols=73 Identities=18% Similarity=0.189 Sum_probs=61.3
Q ss_pred HHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCC-EEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG-MVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 585 ~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~-~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
.....+..+..++...++.+|||||||+|.++..|++.+. +|+|+|+++.+++.|++++. ..++.|+++|+.+
T Consensus 28 ~~~~~~~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~ 101 (253)
T 3g5l_A 28 KAAGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIED 101 (253)
T ss_dssp HHHHHHHHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGG
T ss_pred cchhhHHHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhh
Confidence 3334455667777766789999999999999999999875 99999999999999998865 4579999999875
No 392
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=98.29 E-value=9.4e-07 Score=93.30 Aligned_cols=68 Identities=10% Similarity=0.135 Sum_probs=57.7
Q ss_pred HHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCC---CcEEEEEccHHH
Q 003969 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI---KNCRFVCAKAED 660 (783)
Q Consensus 592 ~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl---~nv~f~~gDaed 660 (783)
.+++.+... +.+|||||||+|.+++.|++.+.+|+|||+++.+++.|++++..+++ .+++|+++|+.+
T Consensus 74 ~~~~~~~~~-~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~ 144 (299)
T 3g2m_A 74 EFATRTGPV-SGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSA 144 (299)
T ss_dssp HHHHHHCCC-CSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTB
T ss_pred HHHHhhCCC-CCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhc
Confidence 344444433 34999999999999999999988999999999999999999987775 579999999876
No 393
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=98.27 E-value=2.7e-06 Score=86.58 Aligned_cols=68 Identities=15% Similarity=0.162 Sum_probs=55.6
Q ss_pred HHHHHhhhcc-CCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHH
Q 003969 589 LYSLGGDWAD-LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664 (783)
Q Consensus 589 L~~~i~~~l~-~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~~ 664 (783)
+...+..++. +.++.+|||||||+|.++..|++...+|+|||+++.+++.|+++ +.++++|+.+.+..
T Consensus 28 ~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~d~~~~~~~ 96 (240)
T 3dli_A 28 VKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK--------FNVVKSDAIEYLKS 96 (240)
T ss_dssp HHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT--------SEEECSCHHHHHHT
T ss_pred HHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh--------cceeeccHHHHhhh
Confidence 3444444433 34678999999999999999999888999999999999999876 78999999987643
No 394
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=98.27 E-value=1.9e-06 Score=87.11 Aligned_cols=62 Identities=19% Similarity=0.170 Sum_probs=53.0
Q ss_pred ccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 597 ADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 597 l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
+.+.++.+|||||||+|.++..|++.+ .+|+|||+++.|++.+.+.++.. .|+.++.+|+.+
T Consensus 53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~--~~v~~~~~d~~~ 116 (210)
T 1nt2_A 53 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASK 116 (210)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTC
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC--CCeEEEEcCCCC
Confidence 456678899999999999999999886 79999999999998888777643 579999998765
No 395
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=98.27 E-value=1.2e-06 Score=86.98 Aligned_cols=59 Identities=20% Similarity=0.235 Sum_probs=53.6
Q ss_pred CCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 599 LGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 599 ~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
..++.+|||+|||+|.++..|++...+|+|||+++.+++.|++ .++.+++|+++|+.++
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~ 102 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDW 102 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGG----GCCTTEEEEECCTTSC
T ss_pred CCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHh----cCCCCeEEEecccccC
Confidence 4567799999999999999999998899999999999999998 5778899999998764
No 396
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=98.26 E-value=2.5e-06 Score=92.04 Aligned_cols=62 Identities=15% Similarity=0.059 Sum_probs=54.2
Q ss_pred CeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHH
Q 003969 603 TLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664 (783)
Q Consensus 603 ~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~~ 664 (783)
.+|||||||+|.++..|++. ..+|++||+++.+++.|+++...+.-.+++++++|+.+++..
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~ 154 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAES 154 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHT
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhh
Confidence 38999999999999999984 359999999999999999997654446799999999998754
No 397
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=98.23 E-value=2.4e-07 Score=94.80 Aligned_cols=62 Identities=26% Similarity=0.289 Sum_probs=53.0
Q ss_pred CCCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCC-HHHHHHH---HHHHHHcCCCcEEEEEccHHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMN-ASAVSDA---HRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s-~~AIe~A---k~Na~~ngl~nv~f~~gDaed~ 661 (783)
.++.+|||||||+|.+++.|++. ..+|+|||++ +.+++.| ++++...++.|+.|+++|++++
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l 90 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESL 90 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBC
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHh
Confidence 46789999999999999999954 4689999999 6666655 8888888999999999999865
No 398
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=98.22 E-value=5.7e-07 Score=90.28 Aligned_cols=61 Identities=31% Similarity=0.516 Sum_probs=55.1
Q ss_pred CCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCC-----cEEEEEccHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIK-----NCRFVCAKAED 660 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~-----nv~f~~gDaed 660 (783)
.++.+|||+|||+|.+++.+++...+|+|+|+++.+++.|++++..+++. ++.++++|+.+
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 94 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASS 94 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTS
T ss_pred CCCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccc
Confidence 36789999999999999999999889999999999999999998877763 68999999865
No 399
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=98.22 E-value=2.8e-06 Score=85.85 Aligned_cols=69 Identities=22% Similarity=0.340 Sum_probs=58.1
Q ss_pred HHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 589 L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
+...+...+. ++.+|||+|||+|.+++.|++. .+|+|+|+++.+++.|++++..++ .+++++++|+.+.
T Consensus 23 ~~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~ 91 (243)
T 3d2l_A 23 WVAWVLEQVE--PGKRIADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAMETN-RHVDFWVQDMREL 91 (243)
T ss_dssp HHHHHHHHSC--TTCEEEEESCTTCHHHHHHTTT-SEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCGGGC
T ss_pred HHHHHHHHcC--CCCeEEEecCCCCHHHHHHhhC-CeEEEEECCHHHHHHHHHhhhhcC-CceEEEEcChhhc
Confidence 4444555543 4689999999999999999998 899999999999999999998777 4689999998753
No 400
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=98.22 E-value=5.7e-07 Score=94.17 Aligned_cols=66 Identities=26% Similarity=0.357 Sum_probs=55.3
Q ss_pred HHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 588 ~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
.|++++..... .+.+|||||||+|.++..|+..+.+|+|||+++.|++.|++ ..++.|++++++++
T Consensus 28 ~l~~~l~~~~~--~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~------~~~v~~~~~~~e~~ 93 (257)
T 4hg2_A 28 ALFRWLGEVAP--ARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALR------HPRVTYAVAPAEDT 93 (257)
T ss_dssp HHHHHHHHHSS--CSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCC------CTTEEEEECCTTCC
T ss_pred HHHHHHHHhcC--CCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhh------cCCceeehhhhhhh
Confidence 46666766654 45689999999999999999999999999999999988764 25799999998763
No 401
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=98.22 E-value=1.5e-06 Score=89.99 Aligned_cols=69 Identities=17% Similarity=0.308 Sum_probs=60.7
Q ss_pred HHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHH------HHHHHHHHHHHcCC-CcEEEEEcc
Q 003969 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNAS------AVSDAHRNAEINGI-KNCRFVCAK 657 (783)
Q Consensus 589 L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~------AIe~Ak~Na~~ngl-~nv~f~~gD 657 (783)
.+..+++.+.+.++.+|||||||+|.+++.+++.. .+|+|||+++. +++.|++++..+++ .+++|+++|
T Consensus 31 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d 109 (275)
T 3bkx_A 31 HRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNT 109 (275)
T ss_dssp HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSC
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECC
Confidence 44556666677788999999999999999999884 79999999997 99999999998888 579999998
No 402
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=98.21 E-value=3.2e-06 Score=87.40 Aligned_cols=62 Identities=18% Similarity=0.148 Sum_probs=52.8
Q ss_pred ccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 597 ADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 597 l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
+.+.+|.+|||||||+|.++..+|+.. ++|+|||+++.+++.+...++.. .|+.++++|+..
T Consensus 72 ~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--~nv~~i~~Da~~ 136 (232)
T 3id6_C 72 NPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--PNIFPLLADARF 136 (232)
T ss_dssp CSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--TTEEEEECCTTC
T ss_pred cCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCeEEEEccccc
Confidence 457889999999999999999999874 49999999999987776666543 589999999874
No 403
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=98.21 E-value=2.4e-06 Score=89.73 Aligned_cols=62 Identities=19% Similarity=0.327 Sum_probs=55.9
Q ss_pred cCCCCCeEEEecCCcCHHHHHHhhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 598 DLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 598 ~~~~g~~VLDLgCGtGti~l~LA~~---~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
.+.++.+|||+|||+|.+++.|++. ..+|+|+|+++.+++.|++++...+. +++|+++|+.+
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~ 83 (284)
T 3gu3_A 19 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATE 83 (284)
T ss_dssp CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS-EEEEEESCTTT
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcchhh
Confidence 4567889999999999999999987 46999999999999999999887766 89999999876
No 404
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=98.21 E-value=2.6e-06 Score=89.22 Aligned_cols=74 Identities=14% Similarity=0.009 Sum_probs=60.2
Q ss_pred HHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCC----CcEEEEEccHHHHH
Q 003969 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI----KNCRFVCAKAEDVM 662 (783)
Q Consensus 589 L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl----~nv~f~~gDaed~l 662 (783)
+...+...+...++.+|||||||+|.+++.|+..+.+|+|||+++.+++.|++++...+. .++.+..+|+.++.
T Consensus 45 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~ 122 (293)
T 3thr_A 45 YKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD 122 (293)
T ss_dssp HHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH
T ss_pred HHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCc
Confidence 334455555555778999999999999999999988999999999999999998755432 46888999987754
No 405
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=98.19 E-value=1.6e-06 Score=103.08 Aligned_cols=77 Identities=13% Similarity=0.229 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHH------cCCCcEEEE
Q 003969 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEI------NGIKNCRFV 654 (783)
Q Consensus 584 ~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~------ngl~nv~f~ 654 (783)
......+..+++++...++.+|||||||+|.+++.|++.+ .+|+|||+++.|++.|++++.. +++.+++|+
T Consensus 704 PL~eqRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefi 783 (950)
T 3htx_A 704 PLSKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLY 783 (950)
T ss_dssp CHHHHHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEE
T ss_pred hHHHHHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEE
Confidence 4455566667777766678999999999999999999987 7999999999999999997653 367789999
Q ss_pred EccHHH
Q 003969 655 CAKAED 660 (783)
Q Consensus 655 ~gDaed 660 (783)
++|+.+
T Consensus 784 qGDa~d 789 (950)
T 3htx_A 784 DGSILE 789 (950)
T ss_dssp ESCTTS
T ss_pred ECchHh
Confidence 999876
No 406
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=98.19 E-value=2e-06 Score=84.95 Aligned_cols=60 Identities=17% Similarity=0.163 Sum_probs=54.7
Q ss_pred CCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
.++ +|||+|||+|.++..|++...+|+|+|+++.+++.|++++..+++ ++.|+++|+.+.
T Consensus 29 ~~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~ 88 (202)
T 2kw5_A 29 PQG-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLADF 88 (202)
T ss_dssp CSS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTTTB
T ss_pred CCC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChhhc
Confidence 355 999999999999999999888999999999999999999988887 899999998753
No 407
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=98.19 E-value=1.5e-06 Score=88.54 Aligned_cols=78 Identities=14% Similarity=0.107 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhhhcc-CCCCCeEEEecCCcCHHHHHHhhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 584 LAAEKLYSLGGDWAD-LGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 584 ~~ae~L~~~i~~~l~-~~~g~~VLDLgCGtGti~l~LA~~-~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
.....++..++..+. ..++.+|||||||+|.+++.|++. ..+|+|||+++.+++.|++++..++..++.|+++|+.++
T Consensus 61 ~~~~~~~~~l~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~ 140 (241)
T 2ex4_A 61 NSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDF 140 (241)
T ss_dssp HHHHHHHHGGGC----CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGC
T ss_pred HhHHHHHHHHHHhcccCCCCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhc
Confidence 344445555544432 235789999999999999999887 469999999999999999998776556799999998753
No 408
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=98.19 E-value=1.4e-06 Score=92.17 Aligned_cols=47 Identities=17% Similarity=0.403 Sum_probs=40.5
Q ss_pred CCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHHcC
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEING 647 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~ng 647 (783)
++.+|||||||+|.+++.|++. ..+|+|||+++.+|+.|++++..++
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~ 94 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYL 94 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhh
Confidence 5789999999999999999998 4799999999999999999977654
No 409
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=98.19 E-value=1.6e-06 Score=87.41 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=51.6
Q ss_pred CCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
.++.+|||+|||+|.++..|++.+.+|+|||+++.+++.|++++.. ++.|+++|+++.
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~ 98 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKD----GITYIHSRFEDA 98 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCS----CEEEEESCGGGC
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHc
Confidence 4567899999999999999999988999999999999999987532 799999998765
No 410
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=98.18 E-value=1.2e-06 Score=88.88 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=53.5
Q ss_pred CCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHHH
Q 003969 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAEDV 661 (783)
Q Consensus 602 g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gDaed~ 661 (783)
+.+|||+|||+|.+++.|++.+.+|+|||+++.+++.|++++...+. .+++|+++|+.++
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 127 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTW 127 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTC
T ss_pred CCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcC
Confidence 35999999999999999999888999999999999999999876544 5799999998763
No 411
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=98.18 E-value=3e-06 Score=85.81 Aligned_cols=56 Identities=13% Similarity=0.204 Sum_probs=51.0
Q ss_pred CCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
.++.+|||+|||+|.++..|++...+|+|||+++.+++.|+++ ..+++|+++|+.+
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~~ 102 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARAN-----APHADVYEWNGKG 102 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH-----CTTSEEEECCSCS
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHh-----CCCceEEEcchhh
Confidence 4678999999999999999999988999999999999999988 4579999999864
No 412
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=98.17 E-value=7.8e-08 Score=99.34 Aligned_cols=70 Identities=11% Similarity=0.119 Sum_probs=60.5
Q ss_pred HHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 590 YSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 590 ~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
+..+++.+.+.++.+|||+|||+|.+++.|++.+.+|+|||+++.+++.|++|+. +..+++++++|+.++
T Consensus 18 ~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~~ 87 (245)
T 1yub_A 18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQF 87 (245)
T ss_dssp HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTT
T ss_pred HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhc--cCCceEEEECChhhc
Confidence 4455666677788899999999999999999999999999999999999998875 346899999998764
No 413
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=98.16 E-value=5.4e-06 Score=90.81 Aligned_cols=65 Identities=12% Similarity=0.158 Sum_probs=54.9
Q ss_pred CCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHH-cC--CC-----cEEEEEccHHHHHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEI-NG--IK-----NCRFVCAKAEDVMGSL 665 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~-ng--l~-----nv~f~~gDaed~l~~l 665 (783)
.+.+|||||||+|.++..++++. .+|++||+++.+++.|++|+.. ++ ++ +++++.+|+.+++..+
T Consensus 188 ~pkrVL~IGgG~G~~arellk~~~~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~ 261 (364)
T 2qfm_A 188 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRY 261 (364)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHH
T ss_pred CCCEEEEEECChhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhh
Confidence 46799999999999999888774 7999999999999999999652 21 22 6999999999998765
No 414
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.15 E-value=2.7e-06 Score=86.32 Aligned_cols=63 Identities=11% Similarity=0.086 Sum_probs=54.4
Q ss_pred cCHHHHHHHhhhcc-ceeeEeec--------cCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEecCC
Q 003969 177 WHSDNLKKFLADHG-ILYKSAKK--------KKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANVVP 239 (783)
Q Consensus 177 ~~~~~Lkklf~~~~-v~~~~i~~--------~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A~p 239 (783)
..+++|++.|++|| |..++|.+ ++++||+||+|.+.++|++||+.|||..|.||.|.|.....
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 34678999999996 77777764 26789999999999999999999999999999999987743
No 415
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=98.15 E-value=4.1e-06 Score=85.39 Aligned_cols=69 Identities=16% Similarity=0.026 Sum_probs=57.1
Q ss_pred HHHhhhccCCCCCeEEEecCCcCHHHHHHhhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 591 SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 591 ~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~-~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
..++..+...++.+|||||||+|.++..|++. ..+|+|||+++.+++.|++++..+ .++.|+++|+.++
T Consensus 83 ~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~ 152 (254)
T 1xtp_A 83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETA 152 (254)
T ss_dssp HHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGC
T ss_pred HHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC--CceEEEEccHHHC
Confidence 33444455567889999999999999999887 578999999999999999987644 5799999998763
No 416
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=98.14 E-value=4.2e-06 Score=81.09 Aligned_cols=56 Identities=21% Similarity=0.382 Sum_probs=50.0
Q ss_pred CCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
.++.+|||+|||+|.++..+++...+|+|+|+++.+++.|++++ .++.++++|+.+
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~-----~~~~~~~~d~~~ 100 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDF-----PEARWVVGDLSV 100 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTT
T ss_pred cCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhC-----CCCcEEEccccc
Confidence 46789999999999999999998889999999999999999875 357888888765
No 417
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=98.14 E-value=1e-06 Score=91.22 Aligned_cols=66 Identities=18% Similarity=0.216 Sum_probs=56.8
Q ss_pred HHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 589 L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
+...+.+.+...++.+|||+|||+|.++..|++...+|+|||+++.+++.|+.+. +++|+++|+++
T Consensus 22 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~d~~~ 87 (261)
T 3ege_A 22 IVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHP------QVEWFTGYAEN 87 (261)
T ss_dssp HHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCT------TEEEECCCTTS
T ss_pred HHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhcc------CCEEEECchhh
Confidence 4555666666677899999999999999999998899999999999999887654 89999999875
No 418
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=98.13 E-value=3.2e-06 Score=87.17 Aligned_cols=69 Identities=29% Similarity=0.373 Sum_probs=55.9
Q ss_pred HHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 585 ~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
....+...+...+ .++.+|||||||+|.++..|++.+.+|+|||+++.+++.|++++. ++.|+++|+.+
T Consensus 36 ~~~~~~~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~-----~~~~~~~d~~~ 104 (263)
T 3pfg_A 36 EAADLAALVRRHS--PKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNP-----DAVLHHGDMRD 104 (263)
T ss_dssp HHHHHHHHHHHHC--TTCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCT-----TSEEEECCTTT
T ss_pred HHHHHHHHHHhhC--CCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC-----CCEEEECChHH
Confidence 3344455555443 356799999999999999999998899999999999999998743 67888888876
No 419
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=98.13 E-value=1.5e-06 Score=89.50 Aligned_cols=56 Identities=14% Similarity=0.119 Sum_probs=48.0
Q ss_pred CCCeEEEecCCcCHHHHHHhhh------CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHR------VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~------~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
++.+|||||||+|.+++.|++. ..+|+|||+++.+++.|+ + . ..+++|+++|+.+.
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~-~---~-~~~v~~~~gD~~~~ 142 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-S---D-MENITLHQGDCSDL 142 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-G---G-CTTEEEEECCSSCS
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh-c---c-CCceEEEECcchhH
Confidence 4579999999999999999987 579999999999999887 1 1 25799999998764
No 420
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=98.12 E-value=3.3e-06 Score=86.33 Aligned_cols=65 Identities=22% Similarity=0.224 Sum_probs=55.7
Q ss_pred HHhhhccCCCCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 592 ~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
.+++.+...++.+|||+|||+|.++..|++. ..+|+|+|+++.+++.|+++ ..++.|+++|+.++
T Consensus 24 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~-----~~~~~~~~~d~~~~ 90 (259)
T 2p35_A 24 DLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR-----LPNTNFGKADLATW 90 (259)
T ss_dssp HHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH-----STTSEEEECCTTTC
T ss_pred HHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-----CCCcEEEECChhhc
Confidence 4556666677889999999999999999988 68999999999999999987 35788999988753
No 421
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=98.12 E-value=5.5e-06 Score=86.38 Aligned_cols=63 Identities=17% Similarity=0.201 Sum_probs=55.9
Q ss_pred CCCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHHH
Q 003969 599 LGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAEDV 661 (783)
Q Consensus 599 ~~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gDaed~ 661 (783)
+.++.+|||+|||+|.+++.+++.. .+|+|||+++.+++.|++++...++ .++.|+++|+.+.
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 126 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR 126 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTS
T ss_pred CCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCcccc
Confidence 3567899999999999999998875 4999999999999999999988877 5799999998764
No 422
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.09 E-value=4.2e-06 Score=74.35 Aligned_cols=69 Identities=12% Similarity=0.253 Sum_probs=55.7
Q ss_pred ccccEEEeCCCc-----ccCH----HHHHHHhhhcc-ceeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeE
Q 003969 164 VELSKCLVHLPR-----KWHS----DNLKKFLADHG-ILYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLK 233 (783)
Q Consensus 164 ~~~~i~V~nLp~-----~~~~----~~Lkklf~~~~-v~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~ 233 (783)
+.-.|.|..++. .|-. .+|.+.|..|| |..+++...+ +||||.+.+.|.+||+ |||+++.||.|+
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~ 88 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKVKGRAVK 88 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEETTEEEE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeeeCCeEEE
Confidence 344677877763 2433 56888889997 7777777655 9999999999999999 999999999999
Q ss_pred EEec
Q 003969 234 VANV 237 (783)
Q Consensus 234 V~~A 237 (783)
|+..
T Consensus 89 V~~k 92 (95)
T 1ufw_A 89 ISGP 92 (95)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9753
No 423
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=98.09 E-value=8.7e-06 Score=84.53 Aligned_cols=69 Identities=14% Similarity=0.172 Sum_probs=59.4
Q ss_pred HHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 587 e~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
+.+|..+..+ ....+|||||||+|.+++++. ...+++|+|+++.+++.|++++..+|. +..|..+|+..
T Consensus 94 d~fY~~i~~~---~~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~g~-~~~~~v~D~~~ 162 (253)
T 3frh_A 94 DTLYDFIFSA---ETPRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFAREKDW-DFTFALQDVLC 162 (253)
T ss_dssp HHHHHHHTSS---CCCSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHTTC-EEEEEECCTTT
T ss_pred HHHHHHHhcC---CCCCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhcCC-CceEEEeeccc
Confidence 4477777776 346799999999999999988 667999999999999999999999884 68899888653
No 424
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=98.08 E-value=4.1e-06 Score=84.69 Aligned_cols=66 Identities=12% Similarity=0.130 Sum_probs=55.1
Q ss_pred HhhhccCCCCCeEEEecCCcCHHHHHHhhhCC-EEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG-MVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 593 i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~-~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
+..++...++.+|||||||+|.++..+++... +|+|||+++.+++.|++++.. .++.++++|+.+.
T Consensus 35 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~ 101 (243)
T 3bkw_A 35 LRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD---TGITYERADLDKL 101 (243)
T ss_dssp HHHHSCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGC
T ss_pred HHHhccccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhc
Confidence 44455555778999999999999999999876 999999999999999987532 3689999998763
No 425
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=98.07 E-value=8.3e-06 Score=86.82 Aligned_cols=70 Identities=17% Similarity=0.003 Sum_probs=53.5
Q ss_pred HHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccH
Q 003969 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658 (783)
Q Consensus 588 ~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDa 658 (783)
.|+..++.... .++..|||+|||+|++++++++.+.+++|||+++.+++.|++|++...-...-.+.+++
T Consensus 223 ~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~~~~~~~~~~~~~~~~ 292 (297)
T 2zig_A 223 ELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFAREVPGFSLEVLDGA 292 (297)
T ss_dssp HHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEECC-
T ss_pred HHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHhccccchhhCCcc
Confidence 34555555544 57889999999999999999999999999999999999999998764322223344444
No 426
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=98.07 E-value=9.4e-06 Score=76.92 Aligned_cols=52 Identities=15% Similarity=0.275 Sum_probs=44.3
Q ss_pred CCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 599 LGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 599 ~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
+.++.+|||+|||+|.++..+++.. .+|+|+|+++ +++ +.++.++++|+.+.
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~----------~~~~~~~~~d~~~~ 74 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP----------IVGVDFLQGDFRDE 74 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC----------CTTEEEEESCTTSH
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc----------cCcEEEEEcccccc
Confidence 5677899999999999999999872 7999999999 653 26799999998764
No 427
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=98.07 E-value=4.1e-06 Score=82.72 Aligned_cols=55 Identities=25% Similarity=0.274 Sum_probs=50.1
Q ss_pred CCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 602 g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
+.+|||+|||+|.++..|+....+|+|||+++.+++.|+++ ..++.|+++|+.++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~~~d~~~~ 96 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQT-----HPSVTFHHGTITDL 96 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHH-----CTTSEEECCCGGGG
T ss_pred CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHh-----CCCCeEEeCccccc
Confidence 67999999999999999999988999999999999999987 34789999999764
No 428
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=98.06 E-value=1.5e-06 Score=92.10 Aligned_cols=62 Identities=6% Similarity=-0.018 Sum_probs=55.3
Q ss_pred CCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHH
Q 003969 602 DTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665 (783)
Q Consensus 602 g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~~l 665 (783)
+..+||+|+|||.+++.+.+.+.+++.||.++.+++..++|++. ..+++++++|+...+..+
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~~a~~~L~~Nl~~--~~~~~V~~~D~~~~L~~l 153 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHF--NKKVYVNHTDGVSKLNAL 153 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCT--TSCEEEECSCHHHHHHHH
T ss_pred CCCceeEeCCcHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHhCc--CCcEEEEeCcHHHHHHHh
Confidence 45689999999999999988889999999999999999999864 357999999999888765
No 429
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=98.06 E-value=2.2e-06 Score=94.69 Aligned_cols=67 Identities=10% Similarity=0.099 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEcc
Q 003969 581 VNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAK 657 (783)
Q Consensus 581 vN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~---~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gD 657 (783)
+....++.+. +++...++.+|||+|||+|.+++.++++ ..+|+|||+++.+++.| .++.++++|
T Consensus 23 TP~~l~~~~~----~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------~~~~~~~~D 89 (421)
T 2ih2_A 23 TPPEVVDFMV----SLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILAD 89 (421)
T ss_dssp CCHHHHHHHH----HHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESC
T ss_pred CCHHHHHHHH----HhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------CCCcEEeCC
Confidence 4555555544 4444445679999999999999999985 36999999999999887 468999998
Q ss_pred HHH
Q 003969 658 AED 660 (783)
Q Consensus 658 aed 660 (783)
+.+
T Consensus 90 ~~~ 92 (421)
T 2ih2_A 90 FLL 92 (421)
T ss_dssp GGG
T ss_pred hhh
Confidence 754
No 430
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=98.06 E-value=7.5e-06 Score=81.44 Aligned_cols=63 Identities=17% Similarity=0.078 Sum_probs=53.4
Q ss_pred HhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 593 i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
++..+...++.+|||+|||+|.++..|++...+|+|||+++.+++.|+++ .++.++.+|+.++
T Consensus 44 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~ 106 (227)
T 3e8s_A 44 ILLAILGRQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAA------GAGEVHLASYAQL 106 (227)
T ss_dssp HHHHHHHTCCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHT------CSSCEEECCHHHH
T ss_pred HHHHhhcCCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHh------cccccchhhHHhh
Confidence 33444445668999999999999999999988999999999999999987 4577999998876
No 431
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=98.05 E-value=5.5e-06 Score=81.90 Aligned_cols=61 Identities=15% Similarity=0.100 Sum_probs=51.2
Q ss_pred CCCCCeEEEecCCcCHHHH-HHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 599 LGPDTLLFDVCCGTGTIGL-TLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 599 ~~~g~~VLDLgCGtGti~l-~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
..++.+|||+|||+|.+++ .++....+|+|||+++.+++.|++++..++ .++.++++|+.+
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~ 82 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENN-FKLNISKGDIRK 82 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHT-CCCCEEECCTTS
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC-CceEEEECchhh
Confidence 3457899999999999854 445556799999999999999999998777 468899999865
No 432
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=98.05 E-value=6.5e-06 Score=83.27 Aligned_cols=68 Identities=12% Similarity=0.274 Sum_probs=56.1
Q ss_pred HHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 589 L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
+...+...+. ++.+|||||||+|.++..|++...+|+|||+++.+++.|++++ ...++.|+++|+.++
T Consensus 43 ~~~~l~~~~~--~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~ 110 (242)
T 3l8d_A 43 IIPFFEQYVK--KEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERG---EGPDLSFIKGDLSSL 110 (242)
T ss_dssp HHHHHHHHSC--TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTT---CBTTEEEEECBTTBC
T ss_pred HHHHHHHHcC--CCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhc---ccCCceEEEcchhcC
Confidence 3444444443 6789999999999999999999889999999999999999874 335799999998753
No 433
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=98.05 E-value=5.3e-06 Score=81.93 Aligned_cols=69 Identities=12% Similarity=0.154 Sum_probs=56.3
Q ss_pred HHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCC-EEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVG-MVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 589 L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~-~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
+...+...+ .++.+|||+|||+|.+++.+++.+. +|+|+|+++.+++.|++++.. ..++.++++|+.++
T Consensus 32 ~~~~l~~~~--~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~ 101 (215)
T 2pxx_A 32 FRALLEPEL--RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKL 101 (215)
T ss_dssp HHHHHGGGC--CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSC
T ss_pred HHHHHHHhc--CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcC
Confidence 444445544 4678999999999999999998864 899999999999999998753 45799999998653
No 434
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=98.05 E-value=4.2e-06 Score=87.31 Aligned_cols=63 Identities=24% Similarity=0.386 Sum_probs=54.0
Q ss_pred HhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 593 i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
+++.+.+.++.+|||+|||+|.++..|++...+|+|+|+++.+++.|++++ .++.|+++|+++
T Consensus 49 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~ 111 (279)
T 3ccf_A 49 LLQLLNPQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNY-----PHLHFDVADARN 111 (279)
T ss_dssp HHHHHCCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----TTSCEEECCTTT
T ss_pred HHHHhCCCCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhC-----CCCEEEECChhh
Confidence 344455667889999999999999999998889999999999999999874 567888998875
No 435
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=98.04 E-value=7.5e-06 Score=87.03 Aligned_cols=75 Identities=16% Similarity=0.170 Sum_probs=58.6
Q ss_pred HHHHHHHhhhccC--CCCCeEEEecCCcCHHHHHHhhh-CCEEEEEeCCHHHHHHHHHHHHHc-------CCCcEEEEEc
Q 003969 587 EKLYSLGGDWADL--GPDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEIN-------GIKNCRFVCA 656 (783)
Q Consensus 587 e~L~~~i~~~l~~--~~g~~VLDLgCGtGti~l~LA~~-~~~VigVE~s~~AIe~Ak~Na~~n-------gl~nv~f~~g 656 (783)
..++..+++.+.. .++.+|||||||+|.++..+++. ..+|+|+|+++.+++.|+++...+ +..++.|+++
T Consensus 18 ~~l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 97 (313)
T 3bgv_A 18 SVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITA 97 (313)
T ss_dssp HHHHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEEC
T ss_pred HHHHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEe
Confidence 3444555544332 26679999999999999999875 579999999999999999998765 4457999999
Q ss_pred cHHHH
Q 003969 657 KAEDV 661 (783)
Q Consensus 657 Daed~ 661 (783)
|+++.
T Consensus 98 D~~~~ 102 (313)
T 3bgv_A 98 DSSKE 102 (313)
T ss_dssp CTTTS
T ss_pred ccccc
Confidence 98864
No 436
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=98.04 E-value=7.5e-06 Score=82.51 Aligned_cols=67 Identities=21% Similarity=0.345 Sum_probs=54.7
Q ss_pred HHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 587 e~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
..+...+...+ .++.+|||+|||+|.++..|++.+.+|+|+|+++.+++.|+++. .++.++++|+.+
T Consensus 28 ~~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~ 94 (239)
T 3bxo_A 28 SDIADLVRSRT--PEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRL-----PDATLHQGDMRD 94 (239)
T ss_dssp HHHHHHHHHHC--TTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHC-----TTCEEEECCTTT
T ss_pred HHHHHHHHHhc--CCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhC-----CCCEEEECCHHH
Confidence 34444454444 46789999999999999999998889999999999999999873 467888888865
No 437
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=98.04 E-value=2.7e-06 Score=81.58 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=51.1
Q ss_pred hhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEcc
Q 003969 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAK 657 (783)
Q Consensus 595 ~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gD 657 (783)
+.+.+.++.+|||+|||+|.++..+++...+|+|+|+++.+++.|+++ ..+++++++|
T Consensus 11 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~v~~~~~d 68 (170)
T 3i9f_A 11 PNIFEGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEK-----FDSVITLSDP 68 (170)
T ss_dssp HHHHSSCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHH-----CTTSEEESSG
T ss_pred HhcCcCCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHh-----CCCcEEEeCC
Confidence 334566788999999999999999999877999999999999999988 4578999988
No 438
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=98.04 E-value=5.3e-06 Score=87.02 Aligned_cols=71 Identities=14% Similarity=0.093 Sum_probs=61.2
Q ss_pred HHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHH
Q 003969 586 AEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAE 659 (783)
Q Consensus 586 ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDae 659 (783)
.+.+|..+..++. ...+|||||||+|.|+++++.. ..+|+|+|+++.+++.++.|+..+|+. .+|...|..
T Consensus 119 lD~fY~~i~~~i~--~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~-~~~~v~D~~ 191 (281)
T 3lcv_B 119 LDEFYRELFRHLP--RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP-HRTNVADLL 191 (281)
T ss_dssp HHHHHHHHGGGSC--CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC-EEEEECCTT
T ss_pred HHHHHHHHHhccC--CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEeeec
Confidence 4567888888774 3569999999999999999876 369999999999999999999999986 788888764
No 439
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=98.03 E-value=4.4e-06 Score=88.57 Aligned_cols=64 Identities=22% Similarity=0.228 Sum_probs=55.9
Q ss_pred cCCCCCeEEEecCCcCHHHHHHhh--h-CCEEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEEccHHHH
Q 003969 598 DLGPDTLLFDVCCGTGTIGLTLAH--R-VGMVIGIEMNASAVSDAHRNAEINGIKN-CRFVCAKAEDV 661 (783)
Q Consensus 598 ~~~~g~~VLDLgCGtGti~l~LA~--~-~~~VigVE~s~~AIe~Ak~Na~~ngl~n-v~f~~gDaed~ 661 (783)
.+.++.+|||+|||+|.+++.|+. . ..+|+|||+++.+++.|++|+..+++.+ ++|+++|+.++
T Consensus 115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 182 (305)
T 3ocj_A 115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKL 182 (305)
T ss_dssp HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGC
T ss_pred hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcC
Confidence 346788999999999999999962 2 4699999999999999999999888854 99999999864
No 440
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=98.03 E-value=1.3e-05 Score=87.90 Aligned_cols=67 Identities=13% Similarity=0.176 Sum_probs=58.2
Q ss_pred hhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCC------CcEEEEEccHHHH
Q 003969 595 DWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGI------KNCRFVCAKAEDV 661 (783)
Q Consensus 595 ~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl------~nv~f~~gDaed~ 661 (783)
..+.+.+|.+|||+|||.|.-++.|+... +.|+++|+++.-++.+++|++.+++ .++.+.+.|+..+
T Consensus 142 ~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~ 216 (359)
T 4fzv_A 142 LALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKW 216 (359)
T ss_dssp HHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGH
T ss_pred HHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhc
Confidence 34567889999999999999999999875 4799999999999999999998876 3688888888764
No 441
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=98.03 E-value=6.4e-06 Score=95.06 Aligned_cols=84 Identities=20% Similarity=0.214 Sum_probs=68.4
Q ss_pred CccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh-----CCEEEEEeCCHHHHHHHHHHHHHcCC--
Q 003969 576 TAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-----VGMVIGIEMNASAVSDAHRNAEINGI-- 648 (783)
Q Consensus 576 ~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~-----~~~VigVE~s~~AIe~Ak~Na~~ngl-- 648 (783)
+.|| +++..+..|...+........+.+|||.|||+|+|.+.+++. ...++|+|+++.++..|+.|+..+|+
T Consensus 197 G~fy-TP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~ 275 (542)
T 3lkd_A 197 GEFY-TPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPI 275 (542)
T ss_dssp SSCC-CCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCG
T ss_pred Ceec-ccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCc
Confidence 4444 677777777776654332456789999999999999988877 35899999999999999999999999
Q ss_pred CcEEEEEccHHH
Q 003969 649 KNCRFVCAKAED 660 (783)
Q Consensus 649 ~nv~f~~gDaed 660 (783)
.++.+.++|...
T Consensus 276 ~~~~I~~gDtL~ 287 (542)
T 3lkd_A 276 ENQFLHNADTLD 287 (542)
T ss_dssp GGEEEEESCTTT
T ss_pred CccceEecceec
Confidence 579999999653
No 442
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=98.01 E-value=6.8e-06 Score=81.75 Aligned_cols=56 Identities=11% Similarity=0.090 Sum_probs=49.1
Q ss_pred CCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
.++.+|||+|||+|.++..|++.+.+|+|||+++.+++.|++++ ++.++++|+.++
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~~ 97 (211)
T 3e23_A 42 PAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL------GRPVRTMLFHQL 97 (211)
T ss_dssp CTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH------TSCCEECCGGGC
T ss_pred CCCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhc------CCceEEeeeccC
Confidence 35789999999999999999999889999999999999999987 456777887653
No 443
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=97.98 E-value=6.7e-06 Score=81.92 Aligned_cols=66 Identities=18% Similarity=0.186 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 584 LAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 584 ~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
..+.+|.+....+--+.++.+|||||||+|.+++.+++...+|+|||+++. ..+.+++|+++|+.+
T Consensus 8 Ra~~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~-----------~~~~~v~~~~~D~~~ 73 (191)
T 3dou_A 8 RAAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEM-----------EEIAGVRFIRCDIFK 73 (191)
T ss_dssp HHHHHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCC-----------CCCTTCEEEECCTTS
T ss_pred cHHHHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHcCCcEEEEecccc-----------ccCCCeEEEEccccC
Confidence 345566665555544567899999999999999999999889999999974 235689999999876
No 444
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=97.98 E-value=9.2e-07 Score=75.59 Aligned_cols=33 Identities=42% Similarity=0.801 Sum_probs=0.0
Q ss_pred CCCcccccccccccccccCCCCCCCccccCcCc
Q 003969 77 LHPLHKTSLCSYFRKVGTCCHGSTCRYAHGEEE 109 (783)
Q Consensus 77 ~~~~~kt~~c~~~~~~~~c~~g~~c~~ahg~~e 109 (783)
.++.|||.+|.+|...|.|++|++|+|+|+..|
T Consensus 44 ~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 44 RHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp ---------------------------------
T ss_pred ccccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 567899999998888899999999999999876
No 445
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=97.95 E-value=8.7e-06 Score=89.57 Aligned_cols=63 Identities=29% Similarity=0.413 Sum_probs=55.1
Q ss_pred CCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHc-----C-C--CcEEEEEccHHHH
Q 003969 599 LGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEIN-----G-I--KNCRFVCAKAEDV 661 (783)
Q Consensus 599 ~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~n-----g-l--~nv~f~~gDaed~ 661 (783)
+.++.+|||||||+|.+++.|++.. .+|+|||+++.+++.|++|+..+ | + .+++|+++|++++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l 154 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENL 154 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCG
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHh
Confidence 4577899999999999999999863 49999999999999999998765 4 3 5899999999864
No 446
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=97.90 E-value=1.7e-05 Score=86.43 Aligned_cols=55 Identities=16% Similarity=0.256 Sum_probs=46.7
Q ss_pred CeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHH
Q 003969 603 TLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVM 662 (783)
Q Consensus 603 ~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l 662 (783)
.+|||||||+|.+++.+...+ ..|+++|+++.|++..+.|.. +..++++|+.++.
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~-----~~~~~~~Di~~~~ 60 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----HTQLLAKTIEGIT 60 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECSCGGGCC
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc-----ccccccCCHHHcc
Confidence 479999999999999998875 479999999999999999853 3457888988764
No 447
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=97.88 E-value=2.7e-05 Score=83.25 Aligned_cols=58 Identities=7% Similarity=0.111 Sum_probs=46.9
Q ss_pred CCCeEEEecCCcCHHHHHHhhh-CCEEEEEeCCHHHHHHHHHHHHHcCCC------cEEEEEccH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAEINGIK------NCRFVCAKA 658 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~-~~~VigVE~s~~AIe~Ak~Na~~ngl~------nv~f~~gDa 658 (783)
++.+|||||||+|.....++.. +.+|+|||+++.||+.|++.+...+.. ++.|.++|+
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~ 112 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETI 112 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCT
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhc
Confidence 4689999999999766655544 579999999999999999988766643 367888887
No 448
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=97.88 E-value=3.2e-05 Score=75.61 Aligned_cols=65 Identities=22% Similarity=0.328 Sum_probs=49.6
Q ss_pred HHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC-----------CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEE
Q 003969 586 AEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-----------GMVIGIEMNASAVSDAHRNAEINGIKNCRFV 654 (783)
Q Consensus 586 ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~-----------~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~ 654 (783)
+..|+.....+..+.++.+|||||||+|.+++.|++.. .+|+|||+++.+ .+.+++++
T Consensus 7 ~~kl~~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~~~~~~ 75 (196)
T 2nyu_A 7 AFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLEGATFL 75 (196)
T ss_dssp HHHHHHHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCTTCEEE
T ss_pred HHHHHHHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCCCCeEE
Confidence 44455554444445678899999999999999999884 789999999842 34678899
Q ss_pred -EccHHHH
Q 003969 655 -CAKAEDV 661 (783)
Q Consensus 655 -~gDaed~ 661 (783)
.+|+.+.
T Consensus 76 ~~~d~~~~ 83 (196)
T 2nyu_A 76 CPADVTDP 83 (196)
T ss_dssp CSCCTTSH
T ss_pred EeccCCCH
Confidence 8887653
No 449
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=97.88 E-value=2.2e-05 Score=85.27 Aligned_cols=69 Identities=19% Similarity=0.169 Sum_probs=59.6
Q ss_pred HHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEEccHHH
Q 003969 591 SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKN-CRFVCAKAED 660 (783)
Q Consensus 591 ~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~n-v~f~~gDaed 660 (783)
..+++.+...++.+|||+|||+|.++..+++.. .+|+++|+ +.+++.|++++..+++.+ ++|+.+|+.+
T Consensus 180 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 251 (359)
T 1x19_A 180 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYK 251 (359)
T ss_dssp HHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTT
T ss_pred HHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCcccc
Confidence 344555556677899999999999999999885 59999999 999999999999988865 9999999875
No 450
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=97.88 E-value=1.4e-05 Score=79.40 Aligned_cols=53 Identities=26% Similarity=0.322 Sum_probs=46.1
Q ss_pred CCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
++.+|||+|||+|.++..+ ...+|+|+|+++.+++.|++++ .++.++++|+.+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l--~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~ 88 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL--PYPQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEA 88 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC--CCSEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTS
T ss_pred CCCeEEEECCCCCHhHHhC--CCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEccccc
Confidence 6789999999999999988 3349999999999999999886 567899998765
No 451
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=97.87 E-value=1.9e-05 Score=82.36 Aligned_cols=59 Identities=25% Similarity=0.247 Sum_probs=47.9
Q ss_pred HHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCC
Q 003969 589 LYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGI 648 (783)
Q Consensus 589 L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl 648 (783)
|+..++.... .++..|||.|||+|++++++.+.+.+++|||+++.+++.|++|++.+++
T Consensus 201 l~~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~~r~~~~~~ 259 (260)
T 1g60_A 201 LIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLNQLEI 259 (260)
T ss_dssp HHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC---
T ss_pred HHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhccC
Confidence 3444444433 5788999999999999999999999999999999999999999987665
No 452
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=97.86 E-value=3.7e-05 Score=83.53 Aligned_cols=67 Identities=19% Similarity=0.127 Sum_probs=58.3
Q ss_pred HhhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHH
Q 003969 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAED 660 (783)
Q Consensus 593 i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~~gDaed 660 (783)
+++.+...++.+|||+|||+|.+++.|++.. .+++++|+ +.+++.|++++..+++. +++|+++|+.+
T Consensus 174 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 243 (374)
T 1qzz_A 174 PADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK 243 (374)
T ss_dssp HHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred HHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC
Confidence 4444455677899999999999999999884 59999999 99999999999999985 79999999864
No 453
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=97.86 E-value=2.1e-05 Score=81.11 Aligned_cols=56 Identities=18% Similarity=0.158 Sum_probs=46.3
Q ss_pred HHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHH
Q 003969 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAE 644 (783)
Q Consensus 587 e~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~ 644 (783)
..+...+..++. ++.+|||+|||+|.++..|++.+.+|+|||+++.+++.|+++..
T Consensus 42 ~~~~~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~ 97 (260)
T 2avn_A 42 RLIGSFLEEYLK--NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGV 97 (260)
T ss_dssp HHHHHHHHHHCC--SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcC--CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcC
Confidence 334444545443 67899999999999999999988899999999999999998754
No 454
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=97.84 E-value=3.5e-05 Score=81.57 Aligned_cols=74 Identities=22% Similarity=0.274 Sum_probs=63.8
Q ss_pred HHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHHH
Q 003969 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGSL 665 (783)
Q Consensus 588 ~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~~l 665 (783)
+|...+++.+.+.++..+||.+||.|..+..|+++..+|+|+|.++.|++.|++ +.. .+++|++++..++-..+
T Consensus 9 VLl~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~-L~~---~rv~lv~~~f~~l~~~L 82 (285)
T 1wg8_A 9 VLYQEALDLLAVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKG-LHL---PGLTVVQGNFRHLKRHL 82 (285)
T ss_dssp TTHHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-TCC---TTEEEEESCGGGHHHHH
T ss_pred HHHHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHh-hcc---CCEEEEECCcchHHHHH
Confidence 456677788888888999999999999999999987899999999999999998 532 58999999998875444
No 455
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=97.81 E-value=1e-05 Score=84.06 Aligned_cols=49 Identities=8% Similarity=-0.014 Sum_probs=41.5
Q ss_pred cCCCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHHc
Q 003969 598 DLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEIN 646 (783)
Q Consensus 598 ~~~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~n 646 (783)
...++.+|||||||+|.+++.++... .+|+|+|+++.||+.|+++++.+
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~ 101 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKE 101 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTC
T ss_pred CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcC
Confidence 44567899999999999888777664 58999999999999999987654
No 456
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=97.81 E-value=2.2e-05 Score=83.74 Aligned_cols=67 Identities=18% Similarity=0.309 Sum_probs=57.6
Q ss_pred HhhhccC--CCCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHH
Q 003969 593 GGDWADL--GPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAED 660 (783)
Q Consensus 593 i~~~l~~--~~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~~gDaed 660 (783)
+++.+.. .++.+|||+|||+|.++..+++. ..+|+++|++ .+++.|++++...++. +++|+.+|+.+
T Consensus 155 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 226 (335)
T 2r3s_A 155 IAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFE 226 (335)
T ss_dssp HHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTT
T ss_pred HHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEeccccc
Confidence 3444444 56789999999999999999988 4699999999 9999999999998985 59999999875
No 457
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=97.76 E-value=6.7e-05 Score=78.91 Aligned_cols=70 Identities=10% Similarity=0.046 Sum_probs=53.9
Q ss_pred HHHHhhhcc-CCCCCeEEEecCCc---CHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 590 YSLGGDWAD-LGPDTLLFDVCCGT---GTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 590 ~~~i~~~l~-~~~g~~VLDLgCGt---Gti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
+..+++++. .....+|||||||+ |.++..+++. ..+|++||+++.|++.|++++.. ..+++|+++|+.+.
T Consensus 65 ~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~--~~~v~~~~~D~~~~ 140 (274)
T 2qe6_A 65 LVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK--DPNTAVFTADVRDP 140 (274)
T ss_dssp HHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT--CTTEEEEECCTTCH
T ss_pred HHHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC--CCCeEEEEeeCCCc
Confidence 333444443 23347999999999 9988777665 36999999999999999998742 35799999999764
No 458
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=97.76 E-value=1.3e-05 Score=82.37 Aligned_cols=44 Identities=11% Similarity=0.139 Sum_probs=39.3
Q ss_pred CCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNA 643 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na 643 (783)
..+.+|||||||+|.++..|++.+ .+|+|||+++.|++.|+++.
T Consensus 36 ~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~ 80 (232)
T 3opn_A 36 INGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSD 80 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTC
T ss_pred CCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhC
Confidence 356799999999999999999986 59999999999999988764
No 459
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=97.75 E-value=5.5e-05 Score=81.83 Aligned_cols=66 Identities=21% Similarity=0.196 Sum_probs=57.4
Q ss_pred hhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHH
Q 003969 594 GDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAED 660 (783)
Q Consensus 594 ~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~~gDaed 660 (783)
++.+...++.+|||+|||+|.++..+++.. .+++++|+ +.+++.|++|+..+++. +++|+.+|+.+
T Consensus 176 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 244 (360)
T 1tw3_A 176 AAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE 244 (360)
T ss_dssp HHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred HHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC
Confidence 444455677899999999999999999875 58999999 99999999999999885 79999999864
No 460
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=97.73 E-value=1.2e-05 Score=82.20 Aligned_cols=49 Identities=14% Similarity=0.076 Sum_probs=43.0
Q ss_pred cCCCCCeEEEecCCcCHHHHHHhhhCC-EEEEEeCCHHHHHHHHHHHHHc
Q 003969 598 DLGPDTLLFDVCCGTGTIGLTLAHRVG-MVIGIEMNASAVSDAHRNAEIN 646 (783)
Q Consensus 598 ~~~~g~~VLDLgCGtGti~l~LA~~~~-~VigVE~s~~AIe~Ak~Na~~n 646 (783)
...++.+|||||||+|.+++.+++.+. +|+|+|+++.+++.|++++..+
T Consensus 53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~ 102 (265)
T 2i62_A 53 GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKE 102 (265)
T ss_dssp SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcC
Confidence 335678999999999999999998875 9999999999999999987644
No 461
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=97.69 E-value=9.1e-05 Score=80.92 Aligned_cols=70 Identities=11% Similarity=0.083 Sum_probs=59.8
Q ss_pred HHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHH
Q 003969 590 YSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAED 660 (783)
Q Consensus 590 ~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gDaed 660 (783)
...+++.....++.+|||+|||+|.++..+++.. .+++++|+ +.+++.|++++...++ .+++|+.+|+.+
T Consensus 191 ~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~ 263 (369)
T 3gwz_A 191 AGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE 263 (369)
T ss_dssp HHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT
T ss_pred HHHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC
Confidence 3445555556677899999999999999999884 59999999 9999999999998887 579999999873
No 462
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=97.68 E-value=4e-05 Score=91.16 Aligned_cols=70 Identities=10% Similarity=0.080 Sum_probs=53.7
Q ss_pred cccCCHHHHHHHHHHHhhhcc--CCCCCeEEEecCCcCHHHHHHhhhC-----CEEEEEeCCHHHHHHH--HHHHHHcC
Q 003969 578 FFQVNTLAAEKLYSLGGDWAD--LGPDTLLFDVCCGTGTIGLTLAHRV-----GMVIGIEMNASAVSDA--HRNAEING 647 (783)
Q Consensus 578 FfQvN~~~ae~L~~~i~~~l~--~~~g~~VLDLgCGtGti~l~LA~~~-----~~VigVE~s~~AIe~A--k~Na~~ng 647 (783)
-|-++...+..|...+...+. ..++.+|||.|||+|+|.+.+++.. .+++|+|+++.+++.| +.|+..|+
T Consensus 296 qFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~ 374 (878)
T 3s1s_A 296 VVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQ 374 (878)
T ss_dssp SSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTT
T ss_pred eEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhh
Confidence 345677788877776333222 2357899999999999999999875 3799999999999999 77776543
No 463
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=97.67 E-value=7.7e-05 Score=77.01 Aligned_cols=68 Identities=18% Similarity=0.306 Sum_probs=53.5
Q ss_pred HHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 587 EKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 587 e~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
..+...+...+. .++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|+++. .++.|+.+|+.+
T Consensus 72 ~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~ 141 (269)
T 1p91_A 72 DAIVAQLRERLD-DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHR 141 (269)
T ss_dssp HHHHHHHHHHSC-TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTS
T ss_pred HHHHHHHHHhcC-CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcchhh
Confidence 344444444332 46789999999999999999987 579999999999999998863 457888888765
No 464
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=97.66 E-value=1.9e-05 Score=91.14 Aligned_cols=75 Identities=19% Similarity=0.119 Sum_probs=56.9
Q ss_pred ccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhh-----------------CCEEEEEeCCHHHHHHHHH
Q 003969 579 FQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHR-----------------VGMVIGIEMNASAVSDAHR 641 (783)
Q Consensus 579 fQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~-----------------~~~VigVE~s~~AIe~Ak~ 641 (783)
|-+.+..+..|+..+ .+..+ +|||.|||+|+|.+.+++. ...++|+|+++.+++.|+.
T Consensus 227 fyTP~~Vv~lmv~ll----~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~ 301 (544)
T 3khk_A 227 YYTPKSIVTLIVEML----EPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAM 301 (544)
T ss_dssp TCCCHHHHHHHHHHH----CCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHH----hcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHH
Confidence 336777777666554 34444 8999999999999887643 2479999999999999999
Q ss_pred HHHHcCCC-cEEEEEccH
Q 003969 642 NAEINGIK-NCRFVCAKA 658 (783)
Q Consensus 642 Na~~ngl~-nv~f~~gDa 658 (783)
|+..+|+. ++.++++|.
T Consensus 302 Nl~l~gi~~~i~i~~gDt 319 (544)
T 3khk_A 302 NMVIRGIDFNFGKKNADS 319 (544)
T ss_dssp HHHHTTCCCBCCSSSCCT
T ss_pred HHHHhCCCcccceeccch
Confidence 99999984 343366664
No 465
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=97.64 E-value=2.7e-05 Score=77.53 Aligned_cols=61 Identities=20% Similarity=0.201 Sum_probs=49.8
Q ss_pred HHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 592 ~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
.+++++. .++.+|||+|||+|.++..+++...+|+|+|+++.+++.|+.+. ..++++|+.+
T Consensus 24 ~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~-------~~~~~~d~~~ 84 (230)
T 3cc8_A 24 NLLKHIK-KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKL-------DHVVLGDIET 84 (230)
T ss_dssp HHHTTCC-TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTS-------SEEEESCTTT
T ss_pred HHHHHhc-cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC-------CcEEEcchhh
Confidence 3445554 56789999999999999999988889999999999999998763 2577777654
No 466
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=97.62 E-value=4.9e-05 Score=74.75 Aligned_cols=63 Identities=22% Similarity=0.375 Sum_probs=47.6
Q ss_pred HHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC----CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV----GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 588 ~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~----~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
+|.+....+--+.++.+|||||||+|.+++.|++.. .+|+|||+++.+ ...+++|+++|+.+.
T Consensus 9 kl~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~ 75 (201)
T 2plw_A 9 KLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKD 75 (201)
T ss_dssp HHHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTTCEEEECCTTTT
T ss_pred HHHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCCceEEEccccch
Confidence 444444333234577899999999999999999873 589999999831 346789999998753
No 467
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=97.58 E-value=8.3e-05 Score=79.65 Aligned_cols=63 Identities=21% Similarity=0.150 Sum_probs=54.7
Q ss_pred ccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHH
Q 003969 597 ADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAED 660 (783)
Q Consensus 597 l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gDaed 660 (783)
+...+..+|||+|||+|.++..+++.. .+++++|+ +.+++.|++++...++ .+++|+.+|+.+
T Consensus 165 ~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 230 (332)
T 3i53_A 165 YDWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD 230 (332)
T ss_dssp SCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred CCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC
Confidence 333456799999999999999999864 58999999 9999999999998888 579999999863
No 468
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=97.57 E-value=6.4e-05 Score=75.39 Aligned_cols=68 Identities=21% Similarity=0.237 Sum_probs=51.5
Q ss_pred ccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccH
Q 003969 579 FQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658 (783)
Q Consensus 579 fQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDa 658 (783)
|+.+..........+..+. ++.+|||+|||+|.++..++.. +|+|+++.+++.|+++ ++.++++|+
T Consensus 28 ~~~~~~~~~~~~~~l~~~~---~~~~vLDiG~G~G~~~~~l~~~----~~vD~s~~~~~~a~~~-------~~~~~~~d~ 93 (219)
T 1vlm_A 28 FLVHRFAYLSELQAVKCLL---PEGRGVEIGVGTGRFAVPLKIK----IGVEPSERMAEIARKR-------GVFVLKGTA 93 (219)
T ss_dssp HHHTHHHHHHHHHHHHHHC---CSSCEEEETCTTSTTHHHHTCC----EEEESCHHHHHHHHHT-------TCEEEECBT
T ss_pred HHhcchhHHHHHHHHHHhC---CCCcEEEeCCCCCHHHHHHHHH----hccCCCHHHHHHHHhc-------CCEEEEccc
Confidence 3444444444444444443 2789999999999999999876 9999999999999987 578889987
Q ss_pred HH
Q 003969 659 ED 660 (783)
Q Consensus 659 ed 660 (783)
.+
T Consensus 94 ~~ 95 (219)
T 1vlm_A 94 EN 95 (219)
T ss_dssp TB
T ss_pred cc
Confidence 64
No 469
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=97.57 E-value=6.3e-05 Score=78.83 Aligned_cols=62 Identities=6% Similarity=-0.210 Sum_probs=51.3
Q ss_pred CCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHH--cC--CCcEEEEEccHHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEI--NG--IKNCRFVCAKAEDVM 662 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~--ng--l~nv~f~~gDaed~l 662 (783)
.+.+|||||||+|.++..+++...+|++||+++.+++.|++++.. ++ -.+++++.+|+.+++
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~ 137 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI 137 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC
T ss_pred CCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH
Confidence 457999999999999998887667999999999999999987532 12 246999999987654
No 470
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=97.55 E-value=8.5e-05 Score=81.96 Aligned_cols=56 Identities=16% Similarity=0.202 Sum_probs=47.2
Q ss_pred CeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHH
Q 003969 603 TLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMG 663 (783)
Q Consensus 603 ~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~ 663 (783)
.+|||||||+|.+++.|.+.+ ..|.+||+++.|++..+.|. .+..++++|+.++..
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~-----~~~~~~~~DI~~~~~ 59 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINF-----PRSLHVQEDVSLLNA 59 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHC-----TTSEEECCCGGGCCH
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhC-----CCCceEecChhhcCH
Confidence 479999999999999998876 45779999999999999884 356788999987643
No 471
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=97.51 E-value=0.00015 Score=78.24 Aligned_cols=68 Identities=12% Similarity=0.042 Sum_probs=57.7
Q ss_pred HhhhccCCC-CCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHHH
Q 003969 593 GGDWADLGP-DTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAEDV 661 (783)
Q Consensus 593 i~~~l~~~~-g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~~gDaed~ 661 (783)
+++.+...+ +.+|||+|||+|.++..+++.. .+++++|+ +.+++.|++++...++. +++|+.+|+.+.
T Consensus 170 ~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 241 (352)
T 3mcz_A 170 VVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDA 241 (352)
T ss_dssp HHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCG
T ss_pred HHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccC
Confidence 444445555 7899999999999999999874 59999999 88999999999988884 599999998764
No 472
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=97.50 E-value=7.6e-05 Score=79.87 Aligned_cols=68 Identities=12% Similarity=0.052 Sum_probs=56.7
Q ss_pred HHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHH
Q 003969 591 SLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAED 660 (783)
Q Consensus 591 ~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gDaed 660 (783)
..+++.+...+ .+|||+|||+|.++..+++.. .+++++|+ +.+++.|++++...++ .+++|+.+|+.+
T Consensus 158 ~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 228 (334)
T 2ip2_A 158 HEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ 228 (334)
T ss_dssp HHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT
T ss_pred HHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC
Confidence 34444444455 899999999999999999874 58999999 9999999999887776 569999999865
No 473
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=97.50 E-value=0.00015 Score=79.03 Aligned_cols=59 Identities=12% Similarity=-0.011 Sum_probs=52.9
Q ss_pred CCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAED 660 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gDaed 660 (783)
...+|||||||+|.++..|++.. .+|+++|+ +.+++.|++++...++ .+++|+.+|+.+
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 240 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLD 240 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCS
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccc
Confidence 45799999999999999999864 58999999 9999999999988887 579999999865
No 474
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=97.48 E-value=0.00016 Score=83.31 Aligned_cols=78 Identities=15% Similarity=0.198 Sum_probs=60.6
Q ss_pred CccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC---------------CEEEEEeCCHHHHHHHH
Q 003969 576 TAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---------------GMVIGIEMNASAVSDAH 640 (783)
Q Consensus 576 ~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~---------------~~VigVE~s~~AIe~Ak 640 (783)
+-|| +++.....|+ +++.+..+.+|+|.+||+|.|.+.+.+.. ..++|+|+++.++..|+
T Consensus 197 Gqfy-TP~~Vv~lmv----~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~ 271 (530)
T 3ufb_A 197 GEFY-TPRPVVRFMV----EVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQ 271 (530)
T ss_dssp CCCC-CCHHHHHHHH----HHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHH
T ss_pred ceEC-CcHHHHHHHH----HhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHH
Confidence 4454 5666665554 44566778899999999999998776531 36999999999999999
Q ss_pred HHHHHcCCCcEEEEEccH
Q 003969 641 RNAEINGIKNCRFVCAKA 658 (783)
Q Consensus 641 ~Na~~ngl~nv~f~~gDa 658 (783)
.|+-.+|+....+.++|.
T Consensus 272 mNl~lhg~~~~~I~~~dt 289 (530)
T 3ufb_A 272 MNLLLHGLEYPRIDPENS 289 (530)
T ss_dssp HHHHHHTCSCCEEECSCT
T ss_pred HHHHhcCCcccccccccc
Confidence 999999987666666664
No 475
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=97.44 E-value=0.00015 Score=76.80 Aligned_cols=74 Identities=11% Similarity=-0.008 Sum_probs=53.6
Q ss_pred HHHHHHhhhccC-CCCCeEEEecCCcCH--HHHHHhhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 588 KLYSLGGDWADL-GPDTLLFDVCCGTGT--IGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 588 ~L~~~i~~~l~~-~~g~~VLDLgCGtGt--i~l~LA~~---~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
.++..+++++.. ....+|||||||+|+ ....+++. ..+|++||.++.|++.|+..+...+..+++|+++|+.+.
T Consensus 64 ~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~ 143 (277)
T 3giw_A 64 DWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDP 143 (277)
T ss_dssp HHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCH
T ss_pred HHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccCh
Confidence 345555555542 234689999999843 34444443 379999999999999999887644445799999999876
No 476
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=97.43 E-value=0.00012 Score=76.61 Aligned_cols=44 Identities=14% Similarity=0.077 Sum_probs=37.4
Q ss_pred CCCeEEEecCCcCHHHHHHhhh-CCEEEEEeCCHHHHHHHHHHHH
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHR-VGMVIGIEMNASAVSDAHRNAE 644 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~-~~~VigVE~s~~AIe~Ak~Na~ 644 (783)
++.+|||||||+|.+++.++.. +.+|+|||+++.|++.|++++.
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~ 115 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQ 115 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHh
Confidence 5789999999999976655553 6799999999999999998764
No 477
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=97.43 E-value=0.00017 Score=79.75 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=50.5
Q ss_pred HHHHHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHH
Q 003969 585 AAEKLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRN 642 (783)
Q Consensus 585 ~ae~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~N 642 (783)
....+...+++.+.+.++.+|||+|||+|.++..|++.+.+|+|||+++.+++.|+++
T Consensus 91 ~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~ 148 (416)
T 4e2x_A 91 HFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREK 148 (416)
T ss_dssp HHHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHc
Confidence 3455666777777777888999999999999999999988999999999999999876
No 478
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=97.42 E-value=7.7e-05 Score=79.55 Aligned_cols=54 Identities=15% Similarity=0.120 Sum_probs=41.7
Q ss_pred HHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHH
Q 003969 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHR 641 (783)
Q Consensus 588 ~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~ 641 (783)
+|...+..+....++.+|||+|||||.++..|++.. .+|+|||+++.|++.+.+
T Consensus 72 Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r 126 (291)
T 3hp7_A 72 KLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLR 126 (291)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHH
T ss_pred HHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence 444434333222357799999999999999999885 699999999999998654
No 479
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=97.41 E-value=0.00023 Score=74.77 Aligned_cols=63 Identities=11% Similarity=0.163 Sum_probs=46.9
Q ss_pred CCCCeEEEecCCcCHHHHHHh----hh--CCE--EEEEeCCHHHHHHHHHHHHHc-CCCcEE--EEEccHHHHH
Q 003969 600 GPDTLLFDVCCGTGTIGLTLA----HR--VGM--VIGIEMNASAVSDAHRNAEIN-GIKNCR--FVCAKAEDVM 662 (783)
Q Consensus 600 ~~g~~VLDLgCGtGti~l~LA----~~--~~~--VigVE~s~~AIe~Ak~Na~~n-gl~nv~--f~~gDaed~l 662 (783)
.++.+|||||||+|.+++.++ .. ..+ ++|||.++.|++.|++++... ++.++. +..++++++.
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~ 124 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQ 124 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhh
Confidence 456799999999998876433 22 233 399999999999999998653 566654 4577777654
No 480
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=97.32 E-value=2.6e-05 Score=82.51 Aligned_cols=66 Identities=12% Similarity=0.139 Sum_probs=46.9
Q ss_pred HhhhccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHH-cCC-CcEEEE--EccHHH
Q 003969 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEI-NGI-KNCRFV--CAKAED 660 (783)
Q Consensus 593 i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~-ngl-~nv~f~--~gDaed 660 (783)
+.+...+.++.+|||||||+|.++..+++. .+|+|||+++ ++..|+++... ... .++.|+ ++|+.+
T Consensus 74 i~~~~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~ 143 (276)
T 2wa2_A 74 IDERGGVELKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTK 143 (276)
T ss_dssp HHHTTSCCCCEEEEEESCTTCHHHHHHHTS-TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGG
T ss_pred HHHcCCCCCCCEEEEeccCCCHHHHHHHHc-CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhh
Confidence 333344557889999999999999999998 8999999998 54333222100 011 178999 889876
No 481
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=97.22 E-value=3.8e-05 Score=80.66 Aligned_cols=58 Identities=16% Similarity=0.112 Sum_probs=44.7
Q ss_pred ccCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeCCHHHHHHHHHHHHHcCCC------cEEEE--EccHHH
Q 003969 597 ADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIK------NCRFV--CAKAED 660 (783)
Q Consensus 597 l~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~s~~AIe~Ak~Na~~ngl~------nv~f~--~gDaed 660 (783)
..+.++.+|||||||+|.++..+++. .+|+|||+++ ++..|+++ .+. ++.|+ ++|+.+
T Consensus 70 ~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~-m~~~a~~~----~~~~~~~~~~v~~~~~~~D~~~ 135 (265)
T 2oxt_A 70 GYVELTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYT-LGVGGHEV----PRITESYGWNIVKFKSRVDIHT 135 (265)
T ss_dssp TSCCCCEEEEEESCTTSHHHHHHHTS-TTEEEEEEEC-CCCSSCCC----CCCCCBTTGGGEEEECSCCTTT
T ss_pred CCCCCCCEEEEeCcCCCHHHHHHHHc-CcEEEEECch-hhhhhhhh----hhhhhccCCCeEEEecccCHhH
Confidence 34567889999999999999999998 8999999998 53333221 222 68898 888876
No 482
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=97.21 E-value=0.00041 Score=73.26 Aligned_cols=66 Identities=20% Similarity=0.235 Sum_probs=48.4
Q ss_pred CCCccccCCHHHHHHHHHHHhhhccCCCCCeEEEecCCcCH----HHHHHhhh-C-----CEEEEEeCCHHHHHHHHHHH
Q 003969 574 SPTAFFQVNTLAAEKLYSLGGDWADLGPDTLLFDVCCGTGT----IGLTLAHR-V-----GMVIGIEMNASAVSDAHRNA 643 (783)
Q Consensus 574 sp~sFfQvN~~~ae~L~~~i~~~l~~~~g~~VLDLgCGtGt----i~l~LA~~-~-----~~VigVE~s~~AIe~Ak~Na 643 (783)
....||. ++...+.+...++.. .++.+|||+|||||. +++.|+.. . .+|+|+|+|+.|++.|++++
T Consensus 82 ~~t~FfR-d~~~f~~l~~~llp~---~~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~ 157 (274)
T 1af7_A 82 NLTAFFR-EAHHFPILAEHARRR---HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGI 157 (274)
T ss_dssp CCCCTTT-TTTHHHHHHHHHHHS---CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTE
T ss_pred cCccccC-ChHHHHHHHHHccCC---CCCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcC
Confidence 4456765 444555555555433 235689999999998 77777765 2 38999999999999999874
No 483
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=97.15 E-value=0.0011 Score=69.38 Aligned_cols=65 Identities=18% Similarity=0.135 Sum_probs=47.4
Q ss_pred CCCeEEEecCCcCHHHHHHhhhC--------------CEEEEEeCCH---HHHH-----------HHHHHHHH-------
Q 003969 601 PDTLLFDVCCGTGTIGLTLAHRV--------------GMVIGIEMNA---SAVS-----------DAHRNAEI------- 645 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l~LA~~~--------------~~VigVE~s~---~AIe-----------~Ak~Na~~------- 645 (783)
+..+|||+|+|+|..++.+++.. .+++++|..+ +.+. .|+.++..
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 45699999999999998866531 3899999887 4444 56666553
Q ss_pred -------cCCCcEEEEEccHHHHHHHH
Q 003969 646 -------NGIKNCRFVCAKAEDVMGSL 665 (783)
Q Consensus 646 -------ngl~nv~f~~gDaed~l~~l 665 (783)
.+..+++++.||+.+.++.+
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~ 166 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQL 166 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGS
T ss_pred hhheeccCCceEEEEEECcHHHHHhhc
Confidence 12347899999999987654
No 484
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.10 E-value=0.00021 Score=61.18 Aligned_cols=32 Identities=25% Similarity=0.580 Sum_probs=27.8
Q ss_pred CCcccccccccccccccCCCCCCCccccCcCcc
Q 003969 78 HPLHKTSLCSYFRKVGTCCHGSTCRYAHGEEEL 110 (783)
Q Consensus 78 ~~~~kt~~c~~~~~~~~c~~g~~c~~ahg~~el 110 (783)
...+||.+|++|.+ |.|.+|++|.|+|.....
T Consensus 5 ~~~~k~~~C~~fl~-G~C~~G~~C~fsH~~~~~ 36 (77)
T 2d9n_A 5 SSGEKTVVCKHWLR-GLCKKGDQCEFLHEYDMT 36 (77)
T ss_dssp CSCCTTSBCHHHHT-TCCSCTTSSSSBCSCCTT
T ss_pred CCCCcceeCHhHcc-CcCCCCCCCCCccccccC
Confidence 45689999999988 999999999999987653
No 485
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=97.08 E-value=0.00069 Score=65.01 Aligned_cols=58 Identities=14% Similarity=0.052 Sum_probs=47.2
Q ss_pred HHHHHHHHhhhccCCCCCeEEEecCCcC-HHHHHHhh-hCCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 586 AEKLYSLGGDWADLGPDTLLFDVCCGTG-TIGLTLAH-RVGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 586 ae~L~~~i~~~l~~~~g~~VLDLgCGtG-ti~l~LA~-~~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
.+.|...+.+.. ..+.+|||+|||.| ..++.|++ ..-.|+++|+++.|+. |++.|+.+
T Consensus 22 ~e~LaeYI~~~~--~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~---------------~v~dDiF~ 81 (153)
T 2k4m_A 22 WNDLAVYIIRCS--GPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG---------------IVRDDITS 81 (153)
T ss_dssp HHHHHHHHHHHS--CSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT---------------EECCCSSS
T ss_pred HHHHHHHHHhcC--CCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc---------------eEEccCCC
Confidence 666777776654 34579999999999 59999998 5668999999999877 88888765
No 486
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.05 E-value=0.0019 Score=58.79 Aligned_cols=73 Identities=16% Similarity=0.226 Sum_probs=61.0
Q ss_pred cccEEEeCCCcccCHHHHHHHhhhc-cc---eeeEeeccCCccEEEEEeCCHHHHHHHHHHHcCCccCCceeEEEec
Q 003969 165 ELSKCLVHLPRKWHSDNLKKFLADH-GI---LYKSAKKKKGMTVGFVKFESVEQLKNAVEELEGISIGNKTLKVANV 237 (783)
Q Consensus 165 ~~~i~V~nLp~~~~~~~Lkklf~~~-~v---~~~~i~~~r~~gfgFVtF~s~Eea~kAIe~LnG~~~~Gr~L~V~~A 237 (783)
+-.|-+-|||-.++...++.|++++ .+ ...+|.....-+=|+|.|.+...|-||.=.|||++|.||+|+|...
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence 4459999999999999999999988 22 2234444445577999999999999999999999999999999865
No 487
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=97.05 E-value=0.00031 Score=76.78 Aligned_cols=64 Identities=16% Similarity=0.143 Sum_probs=51.0
Q ss_pred HHHHhhhcc-CCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 590 YSLGGDWAD-LGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 590 ~~~i~~~l~-~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
...+++.+. ..+..+|||||||+|.++..|++.. .+++++|+ +.+++.|+.+ .+++|+.+|+.+
T Consensus 191 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~ 257 (368)
T 3reo_A 191 MKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF------SGVEHLGGDMFD 257 (368)
T ss_dssp HHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC------TTEEEEECCTTT
T ss_pred HHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc------CCCEEEecCCCC
Confidence 334455444 5567899999999999999999874 58999999 9998887642 579999999864
No 488
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=97.04 E-value=0.0015 Score=72.58 Aligned_cols=64 Identities=13% Similarity=0.120 Sum_probs=48.3
Q ss_pred HHHHHHhhhccCCCCCeEEEecCC------cCHHHHHHhhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccH
Q 003969 588 KLYSLGGDWADLGPDTLLFDVCCG------TGTIGLTLAHR---VGMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKA 658 (783)
Q Consensus 588 ~L~~~i~~~l~~~~g~~VLDLgCG------tGti~l~LA~~---~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDa 658 (783)
.+|..++..+. .++.+||||||| +|..++.+++. ..+|+|||+++.|. ....+++|+++|+
T Consensus 204 ~~Ye~lL~~l~-~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~~~rI~fv~GDa 273 (419)
T 3sso_A 204 PHYDRHFRDYR-NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VDELRIRTIQGDQ 273 (419)
T ss_dssp HHHHHHHGGGT-TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GCBTTEEEEECCT
T ss_pred HHHHHHHHhhc-CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hcCCCcEEEEecc
Confidence 34555555443 245799999999 78888888765 47999999999973 1346899999999
Q ss_pred HHH
Q 003969 659 EDV 661 (783)
Q Consensus 659 ed~ 661 (783)
.+.
T Consensus 274 ~dl 276 (419)
T 3sso_A 274 NDA 276 (419)
T ss_dssp TCH
T ss_pred ccc
Confidence 874
No 489
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=97.03 E-value=0.00035 Score=62.69 Aligned_cols=27 Identities=33% Similarity=0.877 Sum_probs=24.2
Q ss_pred CcccccccccccccccCCCCCCCccccC
Q 003969 79 PLHKTSLCSYFRKVGTCCHGSTCRYAHG 106 (783)
Q Consensus 79 ~~~kt~~c~~~~~~~~c~~g~~c~~ahg 106 (783)
..+||.+|++|. .|.|.+|++|+|+|+
T Consensus 9 ~~~k~~lC~~f~-~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 9 LPKKRELCKFYI-TGFCARAENCPYMHG 35 (98)
T ss_dssp CSCCCSBCTTTT-TTCCSCSTTCSSBSS
T ss_pred CCCCCccCcccc-cCcCCCCCCCCCCCC
Confidence 348999999995 699999999999998
No 490
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=97.03 E-value=0.00041 Score=75.43 Aligned_cols=67 Identities=13% Similarity=0.054 Sum_probs=53.7
Q ss_pred HhhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 593 GGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 593 i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
+++........+|||+|||+|.+++.|+++. .+++..|+ +.+++.|++++...+.++|+|+.+|+.+
T Consensus 171 ~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~ 239 (353)
T 4a6d_A 171 VLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFK 239 (353)
T ss_dssp HHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTT
T ss_pred HHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCcccc
Confidence 4444455566799999999999999999985 47888887 8899999998776666789999999753
No 491
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=96.98 E-value=9e-05 Score=79.39 Aligned_cols=60 Identities=13% Similarity=0.099 Sum_probs=43.5
Q ss_pred cCCCCCeEEEecCCcCHHHHHHhhhCCEEEEEeC----CHHHHHHHHHHHHHcCCCcEEEEEc-cHHH
Q 003969 598 DLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEM----NASAVSDAHRNAEINGIKNCRFVCA-KAED 660 (783)
Q Consensus 598 ~~~~g~~VLDLgCGtGti~l~LA~~~~~VigVE~----s~~AIe~Ak~Na~~ngl~nv~f~~g-Daed 660 (783)
.+.++.+|||||||+|.++..|++. ++|+|||+ ++.+++.+. ++..+..++.|+++ |+.+
T Consensus 79 ~~~~g~~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~D~~~ 143 (305)
T 2p41_A 79 LVTPEGKVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPGHEEPIP--MSTYGWNLVRLQSGVDVFF 143 (305)
T ss_dssp SSCCCEEEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTTSCCCCC--CCSTTGGGEEEECSCCTTT
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHhc-CCEEEEeccccCchhHHHHHH--hhhcCCCCeEEEecccccc
Confidence 3456889999999999999999998 78999999 554432111 11122357999998 7764
No 492
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=96.96 E-value=0.0013 Score=77.14 Aligned_cols=60 Identities=13% Similarity=0.137 Sum_probs=47.6
Q ss_pred CCCeEEEecCCcCHHHH---HHhhhC-C--EEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEEccHHHH
Q 003969 601 PDTLLFDVCCGTGTIGL---TLAHRV-G--MVIGIEMNASAVSDAHRNAEINGIK-NCRFVCAKAEDV 661 (783)
Q Consensus 601 ~g~~VLDLgCGtGti~l---~LA~~~-~--~VigVE~s~~AIe~Ak~Na~~ngl~-nv~f~~gDaed~ 661 (783)
.+..|||+|||+|.+.. .+++.. . +|+|||.++- ...|++..+.|+.. .|+++.||++++
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~-A~~a~~~v~~N~~~dkVtVI~gd~eev 423 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN-AVVTLENWQFEEWGSQVTVVSSDMREW 423 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH-HHHHHHHHHHHTTGGGEEEEESCTTTC
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH-HHHHHHHHHhccCCCeEEEEeCcceec
Confidence 34589999999999844 444432 2 7899999985 56788899999995 499999999874
No 493
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=96.95 E-value=0.001 Score=78.24 Aligned_cols=60 Identities=13% Similarity=0.150 Sum_probs=47.4
Q ss_pred CCeEEEecCCcCHHHHH---HhhhC------------CEEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEEccHHHHH
Q 003969 602 DTLLFDVCCGTGTIGLT---LAHRV------------GMVIGIEMNASAVSDAHRNAEINGIKN-CRFVCAKAEDVM 662 (783)
Q Consensus 602 g~~VLDLgCGtGti~l~---LA~~~------------~~VigVE~s~~AIe~Ak~Na~~ngl~n-v~f~~gDaed~l 662 (783)
+..|||+|||+|.++.. .++.+ .+|+|||.++.|+..++.... ||..+ |+++.+|++++-
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~ 485 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLP 485 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhcc
Confidence 46899999999999743 33322 399999999998877666554 88865 999999999984
No 494
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=96.91 E-value=0.00049 Score=75.16 Aligned_cols=63 Identities=14% Similarity=0.080 Sum_probs=50.6
Q ss_pred HHHhhhcc-CCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 591 SLGGDWAD-LGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 591 ~~i~~~l~-~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
..+++.+. ..+..+|||||||+|.++..|++.. .+++++|+ +.+++.|+. ..+++|+.+|+.+
T Consensus 190 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~ 255 (364)
T 3p9c_A 190 KKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ------FPGVTHVGGDMFK 255 (364)
T ss_dssp HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT
T ss_pred HHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh------cCCeEEEeCCcCC
Confidence 34444444 5567899999999999999999874 58999999 888888764 2579999999875
No 495
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=96.78 E-value=0.00088 Score=73.01 Aligned_cols=63 Identities=13% Similarity=0.043 Sum_probs=50.3
Q ss_pred HHHhhhcc-CCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHH
Q 003969 591 SLGGDWAD-LGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAED 660 (783)
Q Consensus 591 ~~i~~~l~-~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed 660 (783)
..+++.+. ..++.+|||+|||+|.++..|++.. .+++++|+ +.+++.|++ ..+++|+.+|+.+
T Consensus 198 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~ 263 (372)
T 1fp1_D 198 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP------LSGIEHVGGDMFA 263 (372)
T ss_dssp HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT
T ss_pred HHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh------cCCCEEEeCCccc
Confidence 34444443 4567899999999999999999885 47899999 999988764 3579999999865
No 496
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=96.76 E-value=0.00038 Score=58.92 Aligned_cols=31 Identities=26% Similarity=0.600 Sum_probs=26.8
Q ss_pred CCcccccccccccccccCCCCCCCccccCcCc
Q 003969 78 HPLHKTSLCSYFRKVGTCCHGSTCRYAHGEEE 109 (783)
Q Consensus 78 ~~~~kt~~c~~~~~~~~c~~g~~c~~ahg~~e 109 (783)
....|+.+|++|.+ |.|.+|+.|.|+|....
T Consensus 11 ~~~~k~~vCk~fl~-G~C~~G~~C~fsH~~~~ 41 (72)
T 2rhk_C 11 MSGEKTVVCKHWLR-GLCKKGDQCEFLHEYDM 41 (72)
T ss_dssp SSCCCCSBCHHHHT-TCCCCGGGSSSBCSCCT
T ss_pred CCCCcCeeCHHHhc-CCCCCCCCCCCcccccc
Confidence 34578999999988 99999999999998653
No 497
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=96.70 E-value=0.0021 Score=70.31 Aligned_cols=74 Identities=14% Similarity=0.057 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHhhhccCC------CCCeEEEecCCcCHHHHHHhhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCcEE
Q 003969 581 VNTLAAEKLYSLGGDWADLG------PDTLLFDVCCGTGTIGLTLAHR--VGMVIGIEMNASAVSDAHRNAEINGIKNCR 652 (783)
Q Consensus 581 vN~~~ae~L~~~i~~~l~~~------~g~~VLDLgCGtGti~l~LA~~--~~~VigVE~s~~AIe~Ak~Na~~ngl~nv~ 652 (783)
++...+..+++.+ .+. ++..|||+|.|.|.+|..|+.. +++|++||+++..+...+... ...|++
T Consensus 36 ~d~~i~~~Iv~~~----~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~---~~~~l~ 108 (353)
T 1i4w_A 36 WNPTVYNKIFDKL----DLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF---EGSPLQ 108 (353)
T ss_dssp CCHHHHHHHHHHH----CGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT---TTSSCE
T ss_pred CCHHHHHHHHHhc----cCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc---cCCCEE
Confidence 5666666665544 333 3588999999999999999986 679999999999999988765 246899
Q ss_pred EEEccHHHH
Q 003969 653 FVCAKAEDV 661 (783)
Q Consensus 653 f~~gDaed~ 661 (783)
++.+|+.++
T Consensus 109 ii~~D~l~~ 117 (353)
T 1i4w_A 109 ILKRDPYDW 117 (353)
T ss_dssp EECSCTTCH
T ss_pred EEECCccch
Confidence 999999665
No 498
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=96.67 E-value=0.0024 Score=69.15 Aligned_cols=75 Identities=13% Similarity=0.181 Sum_probs=63.2
Q ss_pred HHHHHHhhhccCCCCCeEEEecCCcCHHHHHHhhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHHHHH
Q 003969 588 KLYSLGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV---GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVMGS 664 (783)
Q Consensus 588 ~L~~~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~---~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~l~~ 664 (783)
+|+..+++++.+.+|..++|..||.|.-+..|++.. ++|+|+|.++.|++.|+ ++ .-.++++++++..++...
T Consensus 44 VLl~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL---~~~Rv~lv~~nF~~l~~~ 119 (347)
T 3tka_A 44 VLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI---DDPRFSIIHGPFSALGEY 119 (347)
T ss_dssp TTTHHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC---CCTTEEEEESCGGGHHHH
T ss_pred ccHHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh---cCCcEEEEeCCHHHHHHH
Confidence 477788888888899999999999999999999873 69999999999999984 32 236799999998887655
Q ss_pred HH
Q 003969 665 LL 666 (783)
Q Consensus 665 l~ 666 (783)
+.
T Consensus 120 L~ 121 (347)
T 3tka_A 120 VA 121 (347)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 499
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=96.64 E-value=0.00054 Score=74.00 Aligned_cols=65 Identities=15% Similarity=0.102 Sum_probs=48.9
Q ss_pred HHhhhccCCCCCeEEEecCCcCHHHHHHhhhC--CEEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEEccHH
Q 003969 592 LGGDWADLGPDTLLFDVCCGTGTIGLTLAHRV--GMVIGIEMNASAVSDAHRNAEINGI-KNCRFVCAKAE 659 (783)
Q Consensus 592 ~i~~~l~~~~g~~VLDLgCGtGti~l~LA~~~--~~VigVE~s~~AIe~Ak~Na~~ngl-~nv~f~~gDae 659 (783)
.+++.+...++.+|||+|||+|.++..+++.. .+++++|+ +.++. ++++...++ .+++|+.+|+.
T Consensus 175 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~ 242 (348)
T 3lst_A 175 ILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFL 242 (348)
T ss_dssp HHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTT
T ss_pred HHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCC
Confidence 45555566678899999999999999999875 47999999 45554 333333344 46999999986
No 500
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=96.64 E-value=0.0014 Score=70.97 Aligned_cols=53 Identities=19% Similarity=0.078 Sum_probs=43.0
Q ss_pred CCeEEEecCCcCHHHHHHhhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEccHHHH
Q 003969 602 DTLLFDVCCGTGTIGLTLAHRV-GMVIGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDV 661 (783)
Q Consensus 602 g~~VLDLgCGtGti~l~LA~~~-~~VigVE~s~~AIe~Ak~Na~~ngl~nv~f~~gDaed~ 661 (783)
+.++||||||+|.+++.+...+ ..|.++|+++.|++..+.|... .. ++|+.++
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~--~~-----~~Di~~~ 64 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE--KP-----EGDITQV 64 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC--CC-----BSCGGGS
T ss_pred CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCC--CC-----cCCHHHc
Confidence 4689999999999999998775 5789999999999999999631 11 5777654
Done!