BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003970
(782 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 321 bits (823), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 227/671 (33%), Positives = 332/671 (49%), Gaps = 67/671 (9%)
Query: 109 TTRSWDFMGLILDNTGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKG 168
TTRSWDF+G L P + +IVVG+ DTG+WPES SF +E SP P WKG
Sbjct: 1 TTRSWDFLGFPL-----TVPRRSQVESNIVVGVLDTGIWPESPSFDDE-GFSPPPPKWKG 54
Query: 169 TCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRSARDFLGHGTHTASTA 228
TC F CNRK+IGAR Y G G +N RD GHGTHTASTA
Sbjct: 55 TCETSNNFR----CNRKIIGARSYHIGRPISPGDVNG--------PRDTNGHGTHTASTA 102
Query: 229 AGSIAKNXXXXXXXXXXXXXXXXXXXXXVYKICWGKDSDGKCTEADILAAFDDALHDGVD 288
AG + YK+CW +DG C++ DILAA+DDA+ DGVD
Sbjct: 103 AGGLVSQANLYGLGLGTARGGVPLARIAAYKVCW---NDG-CSDTDILAAYDDAIADGVD 158
Query: 289 VISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAA 348
+IS S G + P R +F IGSF+A++ G+ S GN GP +++PW + VAA
Sbjct: 159 IISLSVGGANP-RHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAA 217
Query: 349 SSIDRTFPTEIVVNSDFSIVGESFISTE------VKAKLV--EAFTYFADGICKCENWMG 400
S++DR F T++ + + S G S + + V + + F C ++
Sbjct: 218 STMDRKFVTQVQIGNGQSFQGVSINTFDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNP 277
Query: 401 RKATGRVVLCFSTMGSVXXXXXXXXXXXXXXSGLIFAEPMTELIAEVDIIPTVRIDIAQG 460
G++V+C ++ G +G++ T A+ +P+ +D
Sbjct: 278 NLLKGKIVVCEASFGP-----HEFFKSLDGAAGVLMTS-NTRDYADSYPLPSSVLDPNDL 331
Query: 461 TQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGV 520
Y+ R P + S T+I AP V FSSRGP+ + D++KPDI+ PG+ +
Sbjct: 332 LATLRYIYSI-RSPGATIFKS-TTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEI 389
Query: 521 LAAWPPNTPPTLLPSDG--RSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSAL 578
LAAW P++ P G R+ +N SGTSMSCPH++G+ +K+ +P WSPAAI+SAL
Sbjct: 390 LAAW-----PSVAPVGGIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSAL 444
Query: 579 MTTAYTRDTSHDSILAGGSMKVSDPFDIGAGHINPMKAMDPGLIYDLKPTDYIVFLRNIG 638
MTTA + + F G+GH+NP+KA+ PGL+YD +DY+ FL G
Sbjct: 445 MTTASPMNARFNP---------QAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQG 495
Query: 639 YTQDQINKIFLPSPDETERTSCPQAHKIPNSFINYPS--ITVSNLQS-TMTIKRTVKNVG 695
Y + +I + ++C + +NYPS ++VS Q+ RT+ +V
Sbjct: 496 YNTQAVRRI------TGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVA 549
Query: 696 QKKNAIYFASXXXXXXXXXXXWPRVLVFSWFKEEVSYYVSLKPLKMSQGRFDFGQIVWSD 755
+ + Y A P VL F+ + S+ ++++ +G +VWSD
Sbjct: 550 PQA-STYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVR--GSIKGFVVSASLVWSD 606
Query: 756 GFHYVRSPLVV 766
G HYVRSP+ +
Sbjct: 607 GVHYVRSPITI 617
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 313 bits (802), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 228/668 (34%), Positives = 330/668 (49%), Gaps = 38/668 (5%)
Query: 109 TTRSWDFMGLILDNTGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKG 168
TT + DF L L+ + + P G D++V + D+G+WPES SFQ++ M IP WKG
Sbjct: 1 TTHTSDF--LKLNPSSGLWPAS-GLGQDVIVAVLDSGIWPESASFQDD-GMPEIPKRWKG 56
Query: 169 TCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRSARDFLGHGTHTASTA 228
C G +F+ CNRKLIGA Y+ KG +N + N SARD GHGTH AS
Sbjct: 57 ICKPGTQFN-ASMCNRKLIGANYFNKGILANDPTVNITMN----SARDTDGHGTHCASIT 111
Query: 229 AGSIAKNXXXXXXXXXXXXXXXXXXXXXVYKICWGKDSDGKCTEADILAAFDDALHDGVD 288
AG+ AK VYK + ++G T +D++AA D A+ DGVD
Sbjct: 112 AGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSF---NEGTFT-SDLIAAMDQAVADGVD 167
Query: 289 VISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAA 348
+IS S+G P + I SF AM GV V S GN GP + N +PW +CVA+
Sbjct: 168 MISISYGYR--FIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVAS 225
Query: 349 SSIDRTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGR--KATGR 406
DRTF + + + I G S + C E + +
Sbjct: 226 GHTDRTFAGTLTLGNGLKIRGWSLFPARAFVRDSPVIYNKTLSDCSSEELLSQVENPENT 285
Query: 407 VVLCFSTMGSVXXXXXXXXXXXXXXSGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDY 466
+V+C G + I +P A P V ++ +G Q+ +Y
Sbjct: 286 IVIC-DDNGDFSDQMRIITRARLKAAIFISEDPGVFRSATFPN-PGVVVNKKEGKQVINY 343
Query: 467 LAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPP 526
+ P + +T + PAP VA S+RGPS I KPDI APG+ +LAA+PP
Sbjct: 344 VKN-SVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPP 402
Query: 527 NTPPTLLPSD-GRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTR 585
N T + ++ S + +SGTSM+ PH +G+ A++K+AHP WSP+AIRSA+MTTA
Sbjct: 403 NVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPL 462
Query: 586 DTSHDSILAGGSMKVSDPFDIGAGHINPMKAMDPGLIYDLKPTDYIVFLRNIGYTQDQIN 645
D + I + K + P D+GAGH++P +A+DPGL+YD P DY+ L ++ +T++Q
Sbjct: 463 DNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFK 522
Query: 646 KIFLPSPDETERTSCPQAHKIPNSFINYPS-ITVSNLQSTMTI-----KRTVKNVGQKKN 699
I R+S P++ +NYPS I + +++ T+ KRTV NVG K
Sbjct: 523 TI--------ARSSASHNCSNPSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVG-KGA 573
Query: 700 AIYFASXXXXXXXXXXXWPRVLVFSWFKEEVSYYVSLKPLKMSQGRFDFGQIVW--SDGF 757
A Y A P++LVF E+ SY ++++ + + G I W +G
Sbjct: 574 ATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGN 633
Query: 758 HYVRSPLV 765
H VRSP+V
Sbjct: 634 HSVRSPIV 641
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 56/89 (62%), Gaps = 10/89 (11%)
Query: 496 FSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVK--WNFQSGTSMSCP 553
FSSRGP++ + LKP++ APG ++AA T S G+ + + GT+M+ P
Sbjct: 312 FSSRGPTA--DNRLKPEVVAPGNWIIAARASGT------SMGQPINDYYTAAPGTAMATP 363
Query: 554 HVSGVVALIKSAHPNWSPAAIRSALMTTA 582
HV+G+ AL+ AHP+W+P +++AL+ TA
Sbjct: 364 HVAGIAALLLQAHPSWTPDKVKTALIETA 392
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 16/142 (11%)
Query: 216 DFLGHGTHTASTAAGSIAKNXXXXXXXXXXXXXXXXXXXXXVYKICWGKDSDGKCTEADI 275
D GHGTH AS AAG+ A + K+ G+ G + +DI
Sbjct: 176 DDNGHGTHVASIAAGTGAASNGKYKGMAPGAKLVGI-------KVLNGQ---GSGSISDI 225
Query: 276 LAAFDDALHD----GVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGP 331
+ D A+ + G+ VI+ S G S + + + NA G+ VV + GN GP
Sbjct: 226 INGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVN--NAWDAGLVVVVAAGNSGP 283
Query: 332 EPSLVQNVAPWSICVAASSIDR 353
V + A S + ++D+
Sbjct: 284 NKYTVGSPAAASKVITVGAVDK 305
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 63/138 (45%), Gaps = 37/138 (26%)
Query: 480 PSKTSIGKVPAPTV-AYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGR 538
PS ++G V + A FSS GP + D+ APG+ + + P N
Sbjct: 172 PSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSICSTLPGN----------- 212
Query: 539 SVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSM 598
K+ +SGTSM+ PHV+G ALI S HPNW+ +RS+L T +
Sbjct: 213 --KYGAKSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENT---------------TT 255
Query: 599 KVSDPFDIGAGHINPMKA 616
K+ D F G G IN A
Sbjct: 256 KLGDSFYYGKGLINVQAA 273
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 62/134 (46%), Gaps = 37/134 (27%)
Query: 480 PSKTSIGKVPAPTV-AYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGR 538
PS ++G V + A FSS GP + D+ APG+ + + P N
Sbjct: 163 PSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSICSTLPGN----------- 203
Query: 539 SVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSM 598
K+ +SGTSM+ PHV+G ALI S HPNW+ +RS+L T +
Sbjct: 204 --KYGAKSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENT---------------TT 246
Query: 599 KVSDPFDIGAGHIN 612
K+ D F G G IN
Sbjct: 247 KLGDSFYYGKGLIN 260
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 63/138 (45%), Gaps = 37/138 (26%)
Query: 480 PSKTSIGKVPAPTV-AYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGR 538
PS ++G V + A FSS GP + D+ APG+ + + P N
Sbjct: 172 PSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSICSTLPGN----------- 212
Query: 539 SVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSM 598
K+ +SGTSM+ PHV+G ALI S HPNW+ +RS+L T +
Sbjct: 213 --KYGAKSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENT---------------TT 255
Query: 599 KVSDPFDIGAGHINPMKA 616
K+ D F G G IN A
Sbjct: 256 KLGDSFYYGKGLINVQAA 273
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 64/138 (46%), Gaps = 37/138 (26%)
Query: 480 PSKTSIGKVPAPTV-AYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGR 538
PS ++G V + A FSS GP + D+ APG+ +++ P N
Sbjct: 163 PSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSIVSTLPGN----------- 203
Query: 539 SVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSM 598
K+ +SGT+M+ PHV+G ALI S HPNW+ +RS+L T +
Sbjct: 204 --KYGAKSGTAMASPHVAGAAALILSKHPNWTNTQVRSSLENT---------------TT 246
Query: 599 KVSDPFDIGAGHINPMKA 616
K+ D F G G IN A
Sbjct: 247 KLGDSFYYGKGLINVQAA 264
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 63/138 (45%), Gaps = 37/138 (26%)
Query: 480 PSKTSIGKVPAPTV-AYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGR 538
PS ++G V + A FSS GP + D+ APG+ + + P N
Sbjct: 172 PSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSIQSTLPGN----------- 212
Query: 539 SVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSM 598
K+ +SGTSM+ PHV+G ALI S HPNW+ +RS+L T +
Sbjct: 213 --KYGAKSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENT---------------TT 255
Query: 599 KVSDPFDIGAGHINPMKA 616
K+ D F G G IN A
Sbjct: 256 KLGDSFYYGKGLINVQAA 273
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 63/134 (47%), Gaps = 37/134 (27%)
Query: 480 PSKTSIGKVPAPTV-AYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGR 538
PS ++G V + A FSS GP + D+ APG+ +++ P N
Sbjct: 163 PSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSIVSTLPGN----------- 203
Query: 539 SVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSM 598
K+ +SGT+M+ PHV+G ALI S HPNW+ +RS+L T +
Sbjct: 204 --KYGAKSGTAMASPHVAGAAALILSKHPNWTNTQVRSSLENT---------------TT 246
Query: 599 KVSDPFDIGAGHIN 612
K+ D F G G IN
Sbjct: 247 KLGDSFYYGKGLIN 260
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 62/138 (44%), Gaps = 37/138 (26%)
Query: 480 PSKTSIGKVPAPTV-AYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGR 538
PS ++G V + A FSS GP + D+ APG+ + + P N
Sbjct: 172 PSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSIXSTLPGN----------- 212
Query: 539 SVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSM 598
K+ SGTSM+ PHV+G ALI S HPNW+ +RS+L T +
Sbjct: 213 --KYGAYSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENT---------------TT 255
Query: 599 KVSDPFDIGAGHINPMKA 616
K+ D F G G IN A
Sbjct: 256 KLGDSFYYGKGLINVQAA 273
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 56/110 (50%), Gaps = 23/110 (20%)
Query: 480 PSKTSIGKVPAPTV-AYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGR 538
PS ++G V + A FSS GP + D+ APG+ + + P N
Sbjct: 172 PSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSIXSTLPGN----------- 212
Query: 539 SVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSAL-MTTAYTRDT 587
K+ SGTSM+ PHV+G ALI S HPNW+ +RS+L TT Y D+
Sbjct: 213 --KYGAYSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTYLGDS 260
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 61/134 (45%), Gaps = 37/134 (27%)
Query: 480 PSKTSIGKVPAPTV-AYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGR 538
PS ++G V + A FSS GP + D+ APG+ + + P N
Sbjct: 163 PSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSICSTLPGN----------- 203
Query: 539 SVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSM 598
K+ +SGT M+ PHV+G ALI S HPNW+ +RS+L T +
Sbjct: 204 --KYGAKSGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENT---------------TT 246
Query: 599 KVSDPFDIGAGHIN 612
K+ D F G G IN
Sbjct: 247 KLGDSFYYGKGLIN 260
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 63/138 (45%), Gaps = 37/138 (26%)
Query: 480 PSKTSIGKVPAPTV-AYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGR 538
PS ++G V + A FSS GP + D+ APG+ + + P N
Sbjct: 163 PSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSICSTLPGN----------- 203
Query: 539 SVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSM 598
K+ +SGTSM+ PHV+G ALI S HPNW+ +RS+L T +
Sbjct: 204 --KYGAKSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENT---------------TT 246
Query: 599 KVSDPFDIGAGHINPMKA 616
K+ + F G G IN A
Sbjct: 247 KLGNSFYYGKGLINVQAA 264
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 62/138 (44%), Gaps = 37/138 (26%)
Query: 480 PSKTSIGKVPAPTV-AYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGR 538
PS ++G V + A FSS GP + D+ APG+ + + P N
Sbjct: 172 PSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSIQSTLPGN----------- 212
Query: 539 SVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSM 598
K+ +SGT M+ PHV+G ALI S HPNW+ +RS+L T +
Sbjct: 213 --KYGAKSGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENT---------------TT 255
Query: 599 KVSDPFDIGAGHINPMKA 616
K+ D F G G IN A
Sbjct: 256 KLGDSFYYGKGLINVQAA 273
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 62/138 (44%), Gaps = 37/138 (26%)
Query: 480 PSKTSIGKVPAPTV-AYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGR 538
PS ++G V + A FSS GP + D+ APG+ + + P N
Sbjct: 172 PSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSIQSTLPGN----------- 212
Query: 539 SVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSM 598
K+ +GTSM+ PHV+G ALI S HPNW+ +RS+L T +
Sbjct: 213 --KYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLQNT---------------TT 255
Query: 599 KVSDPFDIGAGHINPMKA 616
K+ D F G G IN A
Sbjct: 256 KLGDSFYYGKGLINVQAA 273
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 62/138 (44%), Gaps = 37/138 (26%)
Query: 480 PSKTSIGKVPAPTV-AYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGR 538
PS ++G V + A FSS GP + D+ APG+ + + P N
Sbjct: 172 PSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSIQSTLPGN----------- 212
Query: 539 SVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSM 598
K+ +GTSM+ PHV+G ALI S HPNW+ +RS+L T +
Sbjct: 213 --KYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLQNT---------------TT 255
Query: 599 KVSDPFDIGAGHINPMKA 616
K+ D F G G IN A
Sbjct: 256 KLGDSFYYGKGLINVQAA 273
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 62/138 (44%), Gaps = 37/138 (26%)
Query: 480 PSKTSIGKVPAPTV-AYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGR 538
PS ++G V + A FSS GP + D+ APG+ + + P N
Sbjct: 172 PSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSIQSTLPGN----------- 212
Query: 539 SVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSM 598
K+ +GTSM+ PHV+G ALI S HPNW+ +RS+L T +
Sbjct: 213 --KYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENT---------------TT 255
Query: 599 KVSDPFDIGAGHINPMKA 616
K+ D F G G IN A
Sbjct: 256 KLGDSFYYGKGLINVQAA 273
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 61/134 (45%), Gaps = 37/134 (27%)
Query: 480 PSKTSIGKVPAPTV-AYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGR 538
PS ++G V + A FSS GP + D+ APG+ + + P N
Sbjct: 160 PSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSIWSTLPGN----------- 200
Query: 539 SVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSM 598
K+ +SGT M+ PHV+G ALI S HPNW+ +RS+L T +
Sbjct: 201 --KYGAKSGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENT---------------TT 243
Query: 599 KVSDPFDIGAGHIN 612
K+ D F G G IN
Sbjct: 244 KLGDSFYYGKGLIN 257
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 61/134 (45%), Gaps = 37/134 (27%)
Query: 480 PSKTSIGKVPAPTV-AYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGR 538
PS ++G V + A FSS GP + D+ APG+ + + P N
Sbjct: 172 PSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSIQSTLPGN----------- 212
Query: 539 SVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSM 598
K+ +GTSM+ PHV+G ALI S HPNW+ +RS+L T +
Sbjct: 213 --KYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENT---------------TT 255
Query: 599 KVSDPFDIGAGHIN 612
K+ D F G G IN
Sbjct: 256 KLGDSFYYGKGLIN 269
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 61/134 (45%), Gaps = 37/134 (27%)
Query: 480 PSKTSIGKVPAPTV-AYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGR 538
PS ++G V + A FSS GP + D+ APG+ + + P N
Sbjct: 172 PSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSIQSTLPGN----------- 212
Query: 539 SVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSM 598
K+ +GTSM+ PHV+G ALI S HPNW+ +RS+L T +
Sbjct: 213 --KYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENT---------------TT 255
Query: 599 KVSDPFDIGAGHIN 612
K+ D F G G IN
Sbjct: 256 KLGDSFYYGKGLIN 269
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 61/138 (44%), Gaps = 37/138 (26%)
Query: 480 PSKTSIGKVPAPTV-AYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGR 538
PS ++G V + A FSS GP + D+ APG+ + + P N
Sbjct: 172 PSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSIQSTLPGN----------- 212
Query: 539 SVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSM 598
K+ SGT M+ PHV+G ALI S HPNW+ +RS+L T +
Sbjct: 213 --KYGAYSGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENT---------------TT 255
Query: 599 KVSDPFDIGAGHINPMKA 616
K+ D F G G IN A
Sbjct: 256 KLGDSFYYGKGLINVQAA 273
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 61/138 (44%), Gaps = 37/138 (26%)
Query: 480 PSKTSIGKVPAPTV-AYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGR 538
PS ++G V + A FSS GP + D+ APG+ + + P N
Sbjct: 172 PSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSIQSTLPGN----------- 212
Query: 539 SVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSM 598
K+ SGT M+ PHV+G ALI S HPNW+ +RS+L T +
Sbjct: 213 --KYGAYSGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENT---------------TT 255
Query: 599 KVSDPFDIGAGHINPMKA 616
K+ D F G G IN A
Sbjct: 256 KLGDSFYYGKGLINVQAA 273
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 54/115 (46%), Gaps = 32/115 (27%)
Query: 499 RGP-SSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSG 557
R P SS+ P++ D+ APG+ + + P K+ SGTSM+ PHV+G
Sbjct: 177 RAPFSSVGPEL---DVMAPGVSICSTLPGG-------------KYGALSGTSMASPHVAG 220
Query: 558 VVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAGHIN 612
ALI S HPNW+ +RS+L TA K+ D F G G IN
Sbjct: 221 AAALILSKHPNWTNTQVRSSLENTA---------------TKLGDSFYYGKGLIN 260
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 61/138 (44%), Gaps = 37/138 (26%)
Query: 480 PSKTSIGKVPAPTV-AYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGR 538
PS ++G V + A FSS GP + D+ APG+ + + P N
Sbjct: 172 PSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSIQSTLPGN----------- 212
Query: 539 SVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSM 598
K+ +GT M+ PHV+G ALI S HPNW+ +RS+L T +
Sbjct: 213 --KYGAYNGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENT---------------TT 255
Query: 599 KVSDPFDIGAGHINPMKA 616
K+ D F G G IN A
Sbjct: 256 KLGDSFYYGKGLINVQAA 273
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 62/134 (46%), Gaps = 37/134 (27%)
Query: 480 PSKTSIGKVPAPTVAYFSSRGP-SSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGR 538
PS ++G V + + R P SS+ P++ D+ APG+ + + P
Sbjct: 163 PSVIAVGAVDSS-----NQRAPFSSVGPEL---DVMAPGVSICSTLPGG----------- 203
Query: 539 SVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSM 598
K+ SGT+M+ PHV+G ALI S HPNW+ +RS+L TA
Sbjct: 204 --KYGALSGTAMASPHVAGAAALILSKHPNWTNTQVRSSLENTA---------------T 246
Query: 599 KVSDPFDIGAGHIN 612
K+ D F G G IN
Sbjct: 247 KLGDSFYYGKGLIN 260
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 61/138 (44%), Gaps = 37/138 (26%)
Query: 480 PSKTSIGKVPAPTV-AYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGR 538
PS ++G V + A FSS GP + D+ APG+ + + P N
Sbjct: 172 PSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSIQSTLPGN----------- 212
Query: 539 SVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSM 598
K+ +GT M+ PHV+G ALI S HPNW+ +RS+L T +
Sbjct: 213 --KYGAYNGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENT---------------TT 255
Query: 599 KVSDPFDIGAGHINPMKA 616
K+ D F G G IN A
Sbjct: 256 KLGDSFYYGKGLINVQAA 273
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 13/71 (18%)
Query: 512 DITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSP 571
++ APG GV + +P NT TL +GTSM+ PHV+G ALI S HPN S
Sbjct: 196 EVMAPGAGVYSTYPTNTYATL-------------NGTSMASPHVAGAAALILSKHPNLSA 242
Query: 572 AAIRSALMTTA 582
+ +R+ L +TA
Sbjct: 243 SQVRNRLSSTA 253
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 13/71 (18%)
Query: 512 DITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSP 571
++ APG GV + +P NT TL +GTSM+ PHV+G ALI S HPN S
Sbjct: 196 EVMAPGAGVYSTYPTNTYATL-------------NGTSMASPHVAGAAALILSKHPNLSA 242
Query: 572 AAIRSALMTTA 582
+ +R+ L +TA
Sbjct: 243 SQVRNRLSSTA 253
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 13/71 (18%)
Query: 512 DITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSP 571
++ APG GV + +P NT TL +GTSM+ PHV+G ALI S HPN S
Sbjct: 197 EVMAPGAGVYSTYPTNTYATL-------------NGTSMASPHVAGAAALILSKHPNLSA 243
Query: 572 AAIRSALMTTA 582
+ +R+ L +TA
Sbjct: 244 SQVRNRLSSTA 254
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 13/71 (18%)
Query: 512 DITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSP 571
++ APG GV + +P NT TL +GTSM+ PHV+G ALI S HPN S
Sbjct: 197 EVMAPGAGVYSTYPTNTYATL-------------NGTSMASPHVAGAAALILSKHPNLSA 243
Query: 572 AAIRSALMTTA 582
+ +R+ L +TA
Sbjct: 244 SQVRNRLSSTA 254
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 13/71 (18%)
Query: 512 DITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSP 571
++ APG GV + +P NT TL +GTSM+ PHV+G ALI S HPN S
Sbjct: 196 EVMAPGAGVYSTYPTNTYATL-------------NGTSMASPHVAGAAALILSKHPNLSA 242
Query: 572 AAIRSALMTTA 582
+ +R+ L +TA
Sbjct: 243 SQVRNRLSSTA 253
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 13/71 (18%)
Query: 512 DITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSP 571
++ APG GV + +P NT TL +GTSM+ PHV+G ALI S HPN S
Sbjct: 196 EVMAPGAGVYSTYPTNTYATL-------------NGTSMASPHVAGAAALILSKHPNLSA 242
Query: 572 AAIRSALMTTA 582
+ +R+ L +TA
Sbjct: 243 SQVRNRLSSTA 253
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 61/138 (44%), Gaps = 37/138 (26%)
Query: 480 PSKTSIGKVPAPTV-AYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGR 538
PS ++G V + A FSS GP + D+ APG+ + + P N
Sbjct: 172 PSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSIQSTLPGN----------- 212
Query: 539 SVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSM 598
K+ +GTS + PHV+G ALI S HPNW+ +RS+L T +
Sbjct: 213 --KYGAYNGTSXASPHVAGAAALILSKHPNWTNTQVRSSLENT---------------TT 255
Query: 599 KVSDPFDIGAGHINPMKA 616
K+ D F G G IN A
Sbjct: 256 KLGDSFYYGKGLINVQAA 273
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 13/71 (18%)
Query: 512 DITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSP 571
++ APG GV + +P NT TL +GT M+ PHV+G ALI S HPN S
Sbjct: 196 EVMAPGAGVYSTYPTNTYATL-------------NGTXMASPHVAGAAALILSKHPNLSA 242
Query: 572 AAIRSALMTTA 582
+ +R+ L +TA
Sbjct: 243 SQVRNRLSSTA 253
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 13/71 (18%)
Query: 512 DITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSP 571
DI APG+ V + +P +T +L +GTSM+ PHV+GV AL+K +P+WS
Sbjct: 191 DIVAPGVNVQSTYPGSTYASL-------------NGTSMATPHVAGVAALVKQKNPSWSN 237
Query: 572 AAIRSALMTTA 582
IR+ L TA
Sbjct: 238 VQIRNHLKNTA 248
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 13/71 (18%)
Query: 512 DITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSP 571
DI APG+ V + +P +T +L +GTSM+ PHV+G AL+K +P+WS
Sbjct: 191 DIVAPGVNVQSTYPGSTYASL-------------NGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 572 AAIRSALMTTA 582
IR+ L TA
Sbjct: 238 VQIRNHLKNTA 248
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 50/104 (48%), Gaps = 22/104 (21%)
Query: 480 PSKTSIGKV-PAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGR 538
PS ++G V A A FSS G + D+ APG+ + + P T
Sbjct: 172 PSTIAVGAVNSANQRASFSSAGS--------ELDVMAPGVSIQSTLPGGT---------- 213
Query: 539 SVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTA 582
+ +GTSM+ PHV+G ALI S HP W+ A +R L +TA
Sbjct: 214 ---YGAYNGTSMATPHVAGAAALILSKHPTWTNAQVRDRLESTA 254
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 13/71 (18%)
Query: 512 DITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSP 571
DI APG+ V + +P +T +L +GTSM+ PHV+G AL+K +P+WS
Sbjct: 191 DIVAPGVNVQSTYPGSTYASL-------------NGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 572 AAIRSALMTTA 582
IR+ L TA
Sbjct: 238 VQIRNHLKNTA 248
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 13/71 (18%)
Query: 512 DITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSP 571
DI APG+ V + +P +T +L +GTSM+ PHV+G AL+K +P+WS
Sbjct: 191 DIVAPGVNVQSTYPGSTYASL-------------NGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 572 AAIRSALMTTA 582
IR+ L TA
Sbjct: 238 VQIRNHLKNTA 248
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 13/71 (18%)
Query: 512 DITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSP 571
DI APG+ V + +P +T +L +GTSM+ PHV+G AL+K +P+WS
Sbjct: 191 DIVAPGVNVQSTYPGSTYASL-------------NGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 572 AAIRSALMTTA 582
IR+ L TA
Sbjct: 238 VQIRNHLKNTA 248
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 13/71 (18%)
Query: 512 DITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSP 571
DI APG+ V + +P +T +L +GTSM+ PHV+G AL+K +P+WS
Sbjct: 191 DIVAPGVNVQSTYPGSTYASL-------------NGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 572 AAIRSALMTTA 582
IR+ L TA
Sbjct: 238 VQIRNHLKNTA 248
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 13/71 (18%)
Query: 512 DITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSP 571
DI APG+ V + +P +T +L +GT M+ PHV+G AL+K +P+WS
Sbjct: 191 DIVAPGVNVQSTYPGSTYASL-------------NGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 572 AAIRSALMTTA 582
IR+ L TA
Sbjct: 238 VQIRNHLKNTA 248
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 13/71 (18%)
Query: 512 DITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSP 571
DI APG+ V + +P +T +L +GT M+ PHV+G AL+K +P+WS
Sbjct: 191 DIVAPGVNVQSTYPGSTYASL-------------NGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 572 AAIRSALMTTA 582
IR+ L TA
Sbjct: 238 VQIRNHLKNTA 248
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 13/71 (18%)
Query: 512 DITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSP 571
DI APG+ V + +P +T +L +GT M+ PHV+G AL+K +P+WS
Sbjct: 191 DIVAPGVNVQSTYPGSTYASL-------------NGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 572 AAIRSALMTTA 582
IR+ L TA
Sbjct: 238 VQIRNHLKNTA 248
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 13/71 (18%)
Query: 512 DITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSP 571
DI APG+ V + +P +T +L +GT M+ PHV+G AL+K +P+WS
Sbjct: 191 DIVAPGVNVQSTYPGSTYASL-------------NGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 572 AAIRSALMTTA 582
IR+ L TA
Sbjct: 238 VQIRNHLKNTA 248
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 13/71 (18%)
Query: 512 DITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSP 571
++ APG+ V + +P NT +L +GTSM+ PHV+G ALI S +P S
Sbjct: 196 EVMAPGVSVYSTYPSNTYTSL-------------NGTSMASPHVAGAAALILSKYPTLSA 242
Query: 572 AAIRSALMTTA 582
+ +R+ L +TA
Sbjct: 243 SQVRNRLSSTA 253
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 88/385 (22%), Positives = 146/385 (37%), Gaps = 52/385 (13%)
Query: 278 AFDDALHDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDG------- 330
A DA++ G VI+ SFG + A GV++V S GND
Sbjct: 149 AIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTR 208
Query: 331 ------PEPSLVQN--VAPWSICVAASSIDRTFPTEIVVNSDFSIVGESFISTEVKAKLV 382
P+ +V A ++ VA+ S D+ V +D E + + + +
Sbjct: 209 LPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTDDHQAKEMPVLSTNRFEPN 268
Query: 383 EAFTY-FADGICKCENWMGRKATGRVVLCFSTMGSVXXXXXXXXXXXXXXSGLIFAEPMT 441
+A+ Y +A+ K +++ + G++ L G + G++ +
Sbjct: 269 KAYDYAYANRGMKEDDF--KDVKGKIALI--ERGDIDFKDKIANAKKAGAVGVLIYDNQD 324
Query: 442 E----LIAEVDIIPTVRIDIAQGTQLRDYLAQ---FPRLPIVQLKPSKTSIGKVPAPTVA 494
+ + VD +P I G L+D + F P V S T + +
Sbjct: 325 KGFPIELPNVDQMPAAFISRKDGLLLKDNSKKTITFNATPKVLPTASDTKLSR------- 377
Query: 495 YFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPH 554
FSS G ++ +KPDI APG +L++ N K+ SGTSMS P
Sbjct: 378 -FSSWGLTADGN--IKPDIAAPGQDILSSVANN-------------KYAKLSGTSMSAPL 421
Query: 555 VSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVS-DPFDIGAGHINP 613
V+G++ L++ + P S + A S + L K P GAG ++
Sbjct: 422 VAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFSPRQQGAGAVDA 481
Query: 614 MKAMDPGL-IYDLKPTDYIVFLRNI 637
KA + + D T V L N+
Sbjct: 482 KKASAATMYVTDKDNTSSKVHLNNV 506
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 22/104 (21%)
Query: 480 PSKTSIGKVPAPTV-AYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGR 538
PS ++G V + A FSS G + D+ APG+ + + P T
Sbjct: 172 PSTIAVGAVNSSNQRASFSSAGS--------ELDVMAPGVSIQSTLPGGT---------- 213
Query: 539 SVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTA 582
+ +GT M+ PHV+G ALI S HP W+ A +R L +TA
Sbjct: 214 ---YGAYNGTCMATPHVAGAAALILSKHPTWTNAQVRDRLESTA 254
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 22/104 (21%)
Query: 480 PSKTSIGKVPAPTV-AYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGR 538
PS ++G V + A FSS G + D+ APG+ + + P T
Sbjct: 172 PSTIAVGAVNSSNQRASFSSVGS--------ELDVMAPGVSIQSTLPGGT---------- 213
Query: 539 SVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTA 582
+ +GT M+ PHV+G ALI S HP W+ A +R L +TA
Sbjct: 214 ---YGAYNGTXMATPHVAGAAALILSKHPTWTNAQVRDRLESTA 254
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 24/88 (27%)
Query: 480 PSKTSIGKVPA-PTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGR 538
P ++G + + +A FS+R +P+++APG+ +L+ +P ++ TL+
Sbjct: 199 PEVIAVGAIDSNDNIASFSNR----------QPEVSAPGVDILSTYPDDSYETLM----- 243
Query: 539 SVKWNFQSGTSMSCPHVSGVVALIKSAH 566
GT+M+ PHVSGVVALI++A+
Sbjct: 244 --------GTAMATPHVSGVVALIQAAY 263
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 24/88 (27%)
Query: 480 PSKTSIGKVPA-PTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGR 538
P ++G + + +A FS+R +P+++APG+ +L+ +P ++ TL+
Sbjct: 197 PEVIAVGAIDSNDNIASFSNR----------QPEVSAPGVDILSTYPDDSYETLM----- 241
Query: 539 SVKWNFQSGTSMSCPHVSGVVALIKSAH 566
GT+M+ PHVSGVVALI++A+
Sbjct: 242 --------GTAMATPHVSGVVALIQAAY 261
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 24/88 (27%)
Query: 480 PSKTSIGKVPA-PTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGR 538
P ++G + + +A FS+R +P+++APG+ +L+ +P ++ TL+
Sbjct: 277 PEVIAVGAIDSNDNIASFSNR----------QPEVSAPGVDILSTYPDDSYETLM----- 321
Query: 539 SVKWNFQSGTSMSCPHVSGVVALIKSAH 566
GT+M+ PHVSGVVALI++A+
Sbjct: 322 --------GTAMATPHVSGVVALIQAAY 341
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 24/88 (27%)
Query: 480 PSKTSIGKVPA-PTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGR 538
P ++G + + +A FS+R +P+++APG+ +L+ +P ++ TL+
Sbjct: 274 PEVIAVGAIDSNDNIASFSNR----------QPEVSAPGVDILSTYPDDSYETLM----- 318
Query: 539 SVKWNFQSGTSMSCPHVSGVVALIKSAH 566
GT+M+ PHVSGVVALI++A+
Sbjct: 319 --------GTAMATPHVSGVVALIQAAY 338
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 24/88 (27%)
Query: 480 PSKTSIGKVPA-PTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGR 538
P ++G + + +A FS+R +P+++APG+ +L+ +P ++ TL+
Sbjct: 208 PEVIAVGAIDSNDNIASFSNR----------QPEVSAPGVDILSTYPDDSYETLM----- 252
Query: 539 SVKWNFQSGTSMSCPHVSGVVALIKSAH 566
GT+M+ PHVSGVVALI++A+
Sbjct: 253 --------GTAMATPHVSGVVALIQAAY 272
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 24/88 (27%)
Query: 480 PSKTSIGKVPA-PTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGR 538
P ++G + + +A FS+R +P+++APG+ +L+ +P ++ TL+
Sbjct: 277 PEVIAVGAIDSNDNIASFSNR----------QPEVSAPGVDILSTYPDDSYETLM----- 321
Query: 539 SVKWNFQSGTSMSCPHVSGVVALIKSAH 566
GT+M+ PHVSGVVALI++A+
Sbjct: 322 --------GTAMATPHVSGVVALIQAAY 341
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 24/88 (27%)
Query: 480 PSKTSIGKVPA-PTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGR 538
P ++G + + +A FS+R +P+++APG+ +L+ +P ++ TL+
Sbjct: 277 PEVIAVGAIDSNDNIASFSNR----------QPEVSAPGVDILSTYPDDSYETLM----- 321
Query: 539 SVKWNFQSGTSMSCPHVSGVVALIKSAH 566
GT+M+ PHVSGVVALI++A+
Sbjct: 322 --------GTAMATPHVSGVVALIQAAY 341
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 24/88 (27%)
Query: 480 PSKTSIGKVPA-PTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGR 538
P ++G + + +A FS+R +P+++APG+ +L+ +P ++ TL+
Sbjct: 277 PEVIAVGAIDSNDNIASFSNR----------QPEVSAPGVDILSTYPDDSYETLM----- 321
Query: 539 SVKWNFQSGTSMSCPHVSGVVALIKSAH 566
GT+M+ PHVSGVVALI++A+
Sbjct: 322 --------GTAMATPHVSGVVALIQAAY 341
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 24/88 (27%)
Query: 480 PSKTSIGKVPA-PTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGR 538
P ++G + + +A FS+R +P+++APG+ +L+ +P ++ TL+
Sbjct: 208 PEVIAVGAIDSNDNIASFSNR----------QPEVSAPGVDILSTYPDDSYETLM----- 252
Query: 539 SVKWNFQSGTSMSCPHVSGVVALIKSAH 566
GT+M+ PHVSGVVALI++A+
Sbjct: 253 --------GTAMATPHVSGVVALIQAAY 272
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 24/88 (27%)
Query: 480 PSKTSIGKVPA-PTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGR 538
P ++G + + +A FS+R +P+++APG+ +L+ +P ++ TL+
Sbjct: 197 PEVIAVGAIDSNDNIASFSNR----------QPEVSAPGVDILSTYPDDSYETLM----- 241
Query: 539 SVKWNFQSGTSMSCPHVSGVVALIKSAH 566
GT M+ PHVSGVVALI++A+
Sbjct: 242 --------GTXMATPHVSGVVALIQAAY 261
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 24/88 (27%)
Query: 480 PSKTSIGKVPA-PTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGR 538
P ++G + + +A FS+R +P+++APG+ +L+ +P ++ TL+
Sbjct: 197 PEVIAVGAIDSNDNIASFSNR----------QPEVSAPGVDILSTYPDDSYETLM----- 241
Query: 539 SVKWNFQSGTSMSCPHVSGVVALIKSAH 566
GT M+ PHVSGVVALI++A+
Sbjct: 242 --------GTCMATPHVSGVVALIQAAY 261
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 11/71 (15%)
Query: 512 DITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSP 571
DI APG + ++W + T N SGTSM+ PHV+GV AL +PN SP
Sbjct: 198 DIYAPGSSITSSWYTSNSAT-----------NTISGTSMASPHVAGVAALYLDENPNLSP 246
Query: 572 AAIRSALMTTA 582
A + + L T A
Sbjct: 247 AQVTNLLKTRA 257
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 54/121 (44%), Gaps = 24/121 (19%)
Query: 493 VAYFSSRGPSSISPD--ILKPD--ITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGT 548
VA FSSRG + D I K D I+APG V + W T+ SGT
Sbjct: 202 VADFSSRGHKRTAGDYVIQKGDVEISAPGAAVYSTWFDGGYATI-------------SGT 248
Query: 549 SMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGA 608
SM+ PH +G+ A I + P S +R L T A D IL+G S D DI +
Sbjct: 249 SMASPHAAGLAAKIWAQSPAASNVDVRGELQTRASVND-----ILSGNSAGSGD--DIAS 301
Query: 609 G 609
G
Sbjct: 302 G 302
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 25/102 (24%)
Query: 493 VAYFSSRGPSSISPDILKPDITAPGIGVLAAWP-----------PNTPPTLLPSDGRSVK 541
VA FSSR +S + APG+ +L+ P N P T
Sbjct: 328 VAGFSSR-SDGVS-------VGAPGVTILSTVPGEDSIGYEGHNENVPAT------NGGT 373
Query: 542 WNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAY 583
+++ GTSM+ PHV+GVVA++ PN P IR L TA+
Sbjct: 374 YDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAF 415
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 512 DITAPGIGV-----LAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAH 566
DIT P + V LA T + + G + + +GTSM+ PHVSGV L+ S H
Sbjct: 328 DITVPSVSVDRATGLALKAKLGQSTTVSNQGNQ-DYEYYNGTSMATPHVSGVATLVWSYH 386
Query: 567 PNWSPAAIRSALMTTA 582
P S + +R+AL TA
Sbjct: 387 PECSASQVRAALNATA 402
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 17/98 (17%)
Query: 493 VAYFSSRGPSSISPDIL----KPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGT 548
VA +SSRG S + D + +I+APG V + W + +N SGT
Sbjct: 203 VADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTW-------------YNGGYNTISGT 249
Query: 549 SMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRD 586
SM+ PHVSG+ A I + +P+ S +RS L A + D
Sbjct: 250 SMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVD 287
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 8/95 (8%)
Query: 493 VAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSC 552
VA FSSRGP+ +KPD+ APG +L+A P + ++ S K+ + GTSM+
Sbjct: 202 VAQFSSRGPTKDGR--IKPDVMAPGTFILSARSSLAPDSSFWANHDS-KYAYMGGTSMAT 258
Query: 553 PHVSGVVA-----LIKSAHPNWSPAAIRSALMTTA 582
P V+G VA +K+ P+ +++AL+ A
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGA 293
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 11/110 (10%)
Query: 492 TVAYFSSRG-PSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSM 550
+V +SRG +S S + D+ APG +L+ T + S ++F +GTSM
Sbjct: 224 SVGATTSRGIRASFSNYGVDVDLAAPGQDILSTVDSGTRRPV------SDAYSFMAGTSM 277
Query: 551 SCPHVSGVVALIKSA----HPNWSPAAIRSALMTTAYTRDTSHDSILAGG 596
+ PHVSGV AL+ SA + N +PA ++ L++T + D L G
Sbjct: 278 ATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGRLDRALGSG 327
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 11/110 (10%)
Query: 492 TVAYFSSRG-PSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSM 550
+V +SRG +S S + D+ APG +L+ T + S ++F +GTSM
Sbjct: 224 SVGATTSRGIRASFSNYGVDVDLAAPGQDILSTVDSGTRRPV------SDAYSFMAGTSM 277
Query: 551 SCPHVSGVVALIKSA----HPNWSPAAIRSALMTTAYTRDTSHDSILAGG 596
+ PHVSGV AL+ SA + N +PA ++ L++T + D L G
Sbjct: 278 ATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGRLDRALGSG 327
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 11/110 (10%)
Query: 492 TVAYFSSRG-PSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSM 550
+V +SRG +S S + D+ APG +L+ T + S ++F +GTSM
Sbjct: 224 SVGATTSRGIRASFSNYGVDVDLAAPGQDILSTVDSGTRRPV------SDAYSFMAGTSM 277
Query: 551 SCPHVSGVVALIKSA----HPNWSPAAIRSALMTTAYTRDTSHDSILAGG 596
+ PHVSGV AL+ SA + N +PA ++ L++T + D L G
Sbjct: 278 ATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGRLDRALGSG 327
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 17/98 (17%)
Query: 493 VAYFSSRGPSSISPDIL----KPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGT 548
VA +SSRG S + D + +I+APG V + W + +N SGT
Sbjct: 203 VADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTW-------------YNGGYNTISGT 249
Query: 549 SMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRD 586
M+ PHVSG+ A I + +P+ S +RS L A + D
Sbjct: 250 XMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVD 287
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 11/73 (15%)
Query: 512 DITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSP 571
D+ APG + +AW SD + N GTSM+ PHV+GV AL +P+ +P
Sbjct: 196 DLFAPGASIPSAW--------YTSDTATQTLN---GTSMATPHVAGVAALYLEQNPSATP 244
Query: 572 AAIRSALMTTAYT 584
A++ SA++ A T
Sbjct: 245 ASVASAILNGATT 257
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 493 VAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSC 552
VA FSSRGP+ +KPD+ APG +L+A P + ++ S K+ + GTS +
Sbjct: 202 VAQFSSRGPTKDGR--IKPDVMAPGTFILSARSSLAPDSSFWANHDS-KYAYXGGTSXAT 258
Query: 553 PHVSGVVA-----LIKSAHPNWSPAAIRSALMTTA 582
P V+G VA +K+ P+ +++AL+ A
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGA 293
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 82/363 (22%), Positives = 135/363 (37%), Gaps = 51/363 (14%)
Query: 278 AFDDALHDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDG------- 330
A DA++ G VI+ SFG + A GV++V S GND
Sbjct: 140 AIRDAINLGAKVINXSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTR 199
Query: 331 ------PEPSLVQN--VAPWSICVAASSIDRTFPTEIVVNSDFSIVGESFISTEVKAKLV 382
P+ +V A ++ VA+ S D+ + V + E + + + +
Sbjct: 200 LPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETVRVKTADQQDKEXPVLSTNRFEPN 259
Query: 383 EAFTY-FADGICKCENWMGRKATGRVVLCFSTMGSVXXXXXXXXXXXXXXSGLIFAEPMT 441
+A+ Y +A+ K +++ K G++ L G + G++ +
Sbjct: 260 KAYDYAYANRGTKEDDFKDVK--GKIALI--ERGDIDFKDKIAKAKKAGAVGVLIYDNQD 315
Query: 442 E----LIAEVDIIPTVRIDIAQGTQLRDYLAQ---FPRLPIVQLKPSKTSIGKVPAPTVA 494
+ + VD P I G L+D + F P V S T + +
Sbjct: 316 KGFPIELPNVDQXPAAFISRKDGLLLKDNPQKTITFNATPKVLPTASGTKLSR------- 368
Query: 495 YFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPH 554
FSS G ++ +KPDI APG +L++ N K+ SGTS S P
Sbjct: 369 -FSSWGLTADGN--IKPDIAAPGQDILSSVANN-------------KYAKLSGTSXSAPL 412
Query: 555 VSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVS-DPFDIGAGHINP 613
V+G+ L++ + P S + A S + L K P GAG ++
Sbjct: 413 VAGIXGLLQKQYETQYPDXTPSERLDLAKKVLXSSATALYDEDEKAYFSPRQQGAGAVDA 472
Query: 614 MKA 616
KA
Sbjct: 473 KKA 475
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 28/135 (20%)
Query: 513 ITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVAL----IKSAHPN 568
+ APG G +A+ P T K +GTS + PHV+G VAL +K +
Sbjct: 437 VCAPG-GAIASVPQFT----------XSKSQLXNGTSXAAPHVAGAVALLISGLKQQNIE 485
Query: 569 WSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAGHINPMKAMDPGLIYDLKPT 628
+SP +I+ A+ TA + DPF G G +N KA + +
Sbjct: 486 YSPYSIKRAISVTAT-------------KLGYVDPFAQGHGLLNVEKAFEHLTEHRQSKD 532
Query: 629 DYIVFLRNIGYTQDQ 643
+ + F +G D+
Sbjct: 533 NXLRFSVRVGNNADK 547
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 15/71 (21%)
Query: 512 DITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSP 571
D+ APG+ +++ N ++ + SGTSM+ PHV+G+ AL+ S N
Sbjct: 202 DVVAPGVDIVSTITGN-------------RYAYMSGTSMASPHVAGLAALLASQGRN--N 246
Query: 572 AAIRSALMTTA 582
IR A+ TA
Sbjct: 247 IEIRQAIEQTA 257
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 15/71 (21%)
Query: 512 DITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSP 571
D+ APG + + +P +T +L SGTSM+ PHV+GV L+ S S
Sbjct: 201 DVAAPGSSIYSTYPTSTYASL-------------SGTSMATPHVAGVAGLLASQGR--SA 245
Query: 572 AAIRSALMTTA 582
+ IR+A+ TA
Sbjct: 246 SNIRAAIENTA 256
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 36.2 bits (82), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 15/71 (21%)
Query: 512 DITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSP 571
D+ APG + + +P +T +L SGTSM+ PHV+GV L+ S S
Sbjct: 201 DVAAPGSWIYSTYPTSTYASL-------------SGTSMATPHVAGVAGLLASQGR--SA 245
Query: 572 AAIRSALMTTA 582
+ IR+A+ TA
Sbjct: 246 SNIRAAIENTA 256
>pdb|3HJR|A Chain A, Crystal Structure Of Serine Protease Of Aeromonas Sobria
Length = 600
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 546 SGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSIL 593
+GTS + P SG +AL+ SA+P+ S +R L +A D H ++
Sbjct: 333 NGTSSATPSTSGAMALLMSAYPDLSVRDLRDLLARSATRVDAKHQPVM 380
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 13/51 (25%)
Query: 512 DITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALI 562
DI APG+G+ + + + L SGT+M+ PHV+G +ALI
Sbjct: 226 DIVAPGVGIKSTYLDSGYAEL-------------SGTAMAAPHVAGALALI 263
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 13/51 (25%)
Query: 512 DITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALI 562
DI APG+G+ + + + L SGT+M+ PHV+G +ALI
Sbjct: 226 DIVAPGVGIKSTYLDSGYAEL-------------SGTAMAAPHVAGALALI 263
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 542 WNFQSGTSMSCPHVSGVVALIKSA 565
+ ++GTSM+ PHVSGV AL+ SA
Sbjct: 270 YGMKAGTSMAAPHVSGVAALVISA 293
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 542 WNFQSGTSMSCPHVSGVVALIKSA 565
+ ++GTSM+ PHVSGV AL+ SA
Sbjct: 270 YGMKAGTSMAAPHVSGVAALVISA 293
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 13/51 (25%)
Query: 512 DITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALI 562
DI APG+G+ + + + L SGT+M+ PHV+G +ALI
Sbjct: 226 DIVAPGVGIKSTYLDSGYAEL-------------SGTAMAAPHVAGALALI 263
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 13/51 (25%)
Query: 512 DITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALI 562
DI APG+G+ + + + L SGT+M+ PHV+G +ALI
Sbjct: 208 DIVAPGVGIKSTYLDSGYAEL-------------SGTAMAAPHVAGALALI 245
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 20/103 (19%)
Query: 510 KPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAH--- 566
K I APG +L A P +G +++ SGTS + P VSGV AL+ S
Sbjct: 198 KQGILAPGKDILGAKP----------NGGTIRL---SGTSFATPIVSGVAALLLSLQIKR 244
Query: 567 -PNWSPAAIRSALMTTAY---TRDTSHDSILAGGSMKVSDPFD 605
P +++AL+ +A +DT S G + + D +
Sbjct: 245 GEKPDPQKVKNALLASATPCNPKDTDDQSRCLMGKLNILDAIE 287
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 13/64 (20%)
Query: 512 DITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSP 571
DI PG +L+ W + RS+ SGTSM+ PHV+G+ A + + +
Sbjct: 200 DIFGPGTSILSTW--------IGGSTRSI-----SGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 572 AAIR 575
+A R
Sbjct: 247 SACR 250
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 13/64 (20%)
Query: 512 DITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSP 571
DI PG +L+ W + RS+ SGTSM+ PHV+G+ A + + +
Sbjct: 200 DIFGPGTSILSTW--------IGGSTRSI-----SGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 572 AAIR 575
+A R
Sbjct: 247 SACR 250
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 13/64 (20%)
Query: 512 DITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSP 571
DI PG +L+ W + RS+ SGTSM+ PHV+G+ A + + +
Sbjct: 200 DIFGPGTDILSTW--------IGGSTRSI-----SGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 572 AAIR 575
+A R
Sbjct: 247 SACR 250
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 13/71 (18%)
Query: 512 DITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSP 571
D+ APG + +AW T+ SGTSM+ PHV+GV AL + +P
Sbjct: 196 DLFAPGSQIKSAWYDGGYKTI-------------SGTSMATPHVAGVAALYLQENNGLTP 242
Query: 572 AAIRSALMTTA 582
+ L + A
Sbjct: 243 LQLTGLLNSRA 253
>pdb|2H6O|A Chain A, Epstein Barr Virus Major Envelope Glycoprotein
Length = 470
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 16/91 (17%)
Query: 472 RLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLA--AWPPNTP 529
+P Q P+ T+ + Y S+ P + D +P + V A AWP NT
Sbjct: 308 EIPASQDMPTNTT-------DITYVGDNATYSV-PMVTSEDANSPNVTVTAFWAWPNNTE 359
Query: 530 PTLLPSDGRSVKWNFQSGTSMSCPHVSGVVA 560
KW SGT C ++SG A
Sbjct: 360 TDF------KCKWTLTSGTPSGCENISGAFA 384
>pdb|3F7O|A Chain A, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
pdb|3F7O|B Chain B, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
Length = 284
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 13/51 (25%)
Query: 512 DITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALI 562
DI APG +L+ W T T+ SGTSM+ PH+ G+ A +
Sbjct: 203 DIFAPGSNILSTWIGGTTNTI-------------SGTSMATPHIVGLGAYL 240
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,196,036
Number of Sequences: 62578
Number of extensions: 891740
Number of successful extensions: 1980
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1756
Number of HSP's gapped (non-prelim): 202
length of query: 782
length of database: 14,973,337
effective HSP length: 106
effective length of query: 676
effective length of database: 8,340,069
effective search space: 5637886644
effective search space used: 5637886644
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)