Query 003970
Match_columns 782
No_of_seqs 458 out of 3053
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 15:14:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003970.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003970hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 2.4E-52 5.2E-57 450.6 30.0 307 105-583 1-307 (307)
2 PTZ00262 subtilisin-like prote 100.0 2.3E-49 5E-54 443.5 22.8 297 117-623 297-618 (639)
3 cd07478 Peptidases_S8_CspA-lik 100.0 3.4E-48 7.5E-53 435.2 26.7 410 132-609 1-455 (455)
4 cd07497 Peptidases_S8_14 Pepti 100.0 6.6E-48 1.4E-52 412.5 25.3 289 134-582 1-311 (311)
5 cd07479 Peptidases_S8_SKI-1_li 100.0 1E-47 2.2E-52 402.2 24.2 244 128-586 1-254 (255)
6 cd05562 Peptidases_S53_like Pe 100.0 2.1E-47 4.5E-52 402.8 23.6 271 131-618 1-274 (275)
7 cd07475 Peptidases_S8_C5a_Pept 100.0 2.3E-46 5E-51 411.4 28.2 314 126-618 1-346 (346)
8 cd07489 Peptidases_S8_5 Peptid 100.0 2.3E-46 5.1E-51 405.0 26.5 297 124-622 2-302 (312)
9 cd07474 Peptidases_S8_subtilis 100.0 6.3E-45 1.4E-49 391.3 29.3 293 134-616 1-295 (295)
10 cd07476 Peptidases_S8_thiazoli 100.0 4E-45 8.7E-50 384.4 25.1 250 127-588 2-255 (267)
11 cd07483 Peptidases_S8_Subtilis 100.0 7.1E-45 1.5E-49 388.4 25.7 272 135-583 1-291 (291)
12 cd05561 Peptidases_S8_4 Peptid 100.0 2.4E-44 5.3E-49 373.3 23.2 238 137-609 1-239 (239)
13 cd07493 Peptidases_S8_9 Peptid 100.0 1.3E-43 2.9E-48 373.8 24.4 247 136-583 1-261 (261)
14 cd07485 Peptidases_S8_Fervidol 100.0 8.3E-43 1.8E-47 370.1 24.8 264 126-581 1-273 (273)
15 cd07481 Peptidases_S8_Bacillop 100.0 1.1E-42 2.5E-47 367.2 24.8 247 134-583 1-264 (264)
16 cd04857 Peptidases_S8_Tripepti 100.0 3E-42 6.4E-47 375.5 28.0 223 215-585 182-412 (412)
17 cd07487 Peptidases_S8_1 Peptid 100.0 7.5E-42 1.6E-46 361.4 25.3 258 134-583 1-264 (264)
18 cd07494 Peptidases_S8_10 Pepti 100.0 1.6E-41 3.5E-46 362.4 23.3 255 123-587 9-287 (298)
19 cd07484 Peptidases_S8_Thermita 100.0 3.3E-41 7E-46 355.6 24.5 243 123-585 17-259 (260)
20 cd04847 Peptidases_S8_Subtilis 100.0 1.8E-41 3.8E-46 363.3 21.4 236 214-583 34-291 (291)
21 cd04077 Peptidases_S8_PCSK9_Pr 100.0 4.5E-41 9.8E-46 353.5 24.0 233 127-584 17-255 (255)
22 cd07490 Peptidases_S8_6 Peptid 100.0 9.2E-41 2E-45 351.0 24.6 253 136-583 1-254 (254)
23 cd07496 Peptidases_S8_13 Pepti 100.0 1.4E-40 3E-45 355.3 24.7 207 213-581 66-285 (285)
24 KOG1153 Subtilisin-related pro 100.0 1.9E-41 4.1E-46 353.9 17.4 331 25-584 78-462 (501)
25 cd04842 Peptidases_S8_Kp43_pro 100.0 1.7E-40 3.6E-45 356.6 25.2 279 130-583 2-293 (293)
26 cd07480 Peptidases_S8_12 Pepti 100.0 2.5E-40 5.5E-45 355.1 23.6 267 129-614 2-296 (297)
27 cd07498 Peptidases_S8_15 Pepti 100.0 2.5E-40 5.4E-45 345.2 22.8 241 137-581 1-242 (242)
28 cd07473 Peptidases_S8_Subtilis 100.0 5.2E-40 1.1E-44 346.3 25.3 253 135-583 2-259 (259)
29 cd04843 Peptidases_S8_11 Pepti 100.0 3E-40 6.6E-45 348.7 21.6 248 123-583 3-277 (277)
30 cd07477 Peptidases_S8_Subtilis 100.0 2.2E-39 4.7E-44 335.2 23.5 227 136-581 1-229 (229)
31 cd07491 Peptidases_S8_7 Peptid 100.0 3.4E-39 7.3E-44 335.3 19.3 162 134-350 2-170 (247)
32 cd07482 Peptidases_S8_Lantibio 100.0 9E-39 2E-43 343.3 22.4 210 212-581 47-294 (294)
33 PF00082 Peptidase_S8: Subtila 100.0 1.4E-39 3E-44 347.3 15.5 276 138-618 1-282 (282)
34 cd07492 Peptidases_S8_8 Peptid 100.0 2.6E-38 5.7E-43 325.5 22.3 222 136-583 1-222 (222)
35 cd04059 Peptidases_S8_Protein_ 100.0 9.2E-39 2E-43 343.7 17.7 252 122-583 26-297 (297)
36 cd04848 Peptidases_S8_Autotran 100.0 5E-37 1.1E-41 324.7 22.0 246 133-583 1-267 (267)
37 KOG4266 Subtilisin kexin isozy 100.0 2.1E-36 4.6E-41 323.4 24.5 358 27-619 49-466 (1033)
38 KOG1114 Tripeptidyl peptidase 100.0 2.4E-32 5.2E-37 304.6 21.5 242 217-618 309-557 (1304)
39 cd07488 Peptidases_S8_2 Peptid 100.0 2.1E-32 4.5E-37 283.5 16.0 197 213-582 32-247 (247)
40 cd00306 Peptidases_S8_S53 Pept 100.0 1.4E-30 3E-35 269.9 23.6 197 213-581 39-241 (241)
41 COG1404 AprE Subtilisin-like s 99.9 9.1E-23 2E-27 234.6 22.6 253 123-584 128-398 (508)
42 KOG3526 Subtilisin-like propro 99.9 7E-22 1.5E-26 201.9 10.4 299 123-627 149-466 (629)
43 cd04056 Peptidases_S53 Peptida 99.7 9.2E-17 2E-21 176.7 13.9 103 244-353 81-198 (361)
44 cd02120 PA_subtilisin_like PA_ 99.2 9.2E-11 2E-15 109.4 12.5 117 359-477 2-125 (126)
45 cd02133 PA_C5a_like PA_C5a_lik 99.2 9E-11 1.9E-15 111.9 11.3 110 379-502 28-141 (143)
46 PF05922 Inhibitor_I9: Peptida 98.9 4.9E-09 1.1E-13 89.8 7.3 78 29-108 1-82 (82)
47 PF02225 PA: PA domain; Inter 98.8 1.7E-08 3.6E-13 90.1 8.1 87 379-467 8-101 (101)
48 cd04816 PA_SaNapH_like PA_SaNa 98.7 1.7E-07 3.7E-12 86.7 11.1 90 379-472 19-116 (122)
49 cd02129 PA_hSPPL_like PA_hSPPL 98.6 1.7E-07 3.7E-12 85.2 9.8 85 379-468 22-113 (120)
50 cd02122 PA_GRAIL_like PA _GRAI 98.6 4.2E-07 9.1E-12 85.5 11.6 88 387-477 41-137 (138)
51 cd02127 PA_hPAP21_like PA_hPAP 98.6 6.7E-07 1.5E-11 81.8 11.6 84 390-477 21-115 (118)
52 cd02130 PA_ScAPY_like PA_ScAPY 98.5 1.5E-06 3.3E-11 80.4 12.5 89 379-475 24-119 (122)
53 cd04818 PA_subtilisin_1 PA_sub 98.5 1E-06 2.3E-11 81.0 10.0 80 390-473 27-113 (118)
54 cd02125 PA_VSR PA_VSR: Proteas 98.4 1.8E-06 4E-11 80.0 10.9 82 390-474 22-123 (127)
55 cd00538 PA PA: Protease-associ 98.4 1.4E-06 3E-11 81.0 9.8 77 390-468 30-117 (126)
56 cd04817 PA_VapT_like PA_VapT_l 98.4 1.1E-06 2.5E-11 82.2 8.9 72 397-468 49-132 (139)
57 cd02126 PA_EDEM3_like PA_EDEM3 98.4 1.7E-06 3.6E-11 80.4 9.7 76 390-468 27-117 (126)
58 cd02132 PA_GO-like PA_GO-like: 98.4 1.8E-06 3.8E-11 81.7 9.8 78 390-473 48-134 (139)
59 cd04813 PA_1 PA_1: Protease-as 98.3 2E-06 4.3E-11 78.6 9.0 75 390-468 27-110 (117)
60 cd02124 PA_PoS1_like PA_PoS1_l 98.3 2.7E-06 5.9E-11 79.1 9.8 81 389-473 40-124 (129)
61 KOG3525 Subtilisin-like propro 98.3 3.6E-06 7.7E-11 94.0 11.8 159 123-332 21-187 (431)
62 cd02123 PA_C_RZF_like PA_C-RZF 98.3 4E-06 8.7E-11 80.6 10.4 77 390-468 50-138 (153)
63 COG4934 Predicted protease [Po 98.2 2.1E-05 4.6E-10 94.5 14.4 99 243-348 285-395 (1174)
64 PF06280 DUF1034: Fn3-like dom 98.1 7.4E-05 1.6E-09 68.0 12.9 88 676-765 1-112 (112)
65 cd04819 PA_2 PA_2: Protease-as 98.0 4.4E-05 9.5E-10 71.1 10.7 84 379-468 25-118 (127)
66 cd02128 PA_TfR PA_TfR: Proteas 97.2 0.0011 2.5E-08 64.9 7.8 67 400-468 51-154 (183)
67 cd04820 PA_M28_1_1 PA_M28_1_1: 97.1 0.0016 3.5E-08 60.9 7.1 64 378-441 23-96 (137)
68 cd04814 PA_M28_1 PA_M28_1: Pro 97.0 0.002 4.4E-08 60.7 7.0 63 379-441 22-100 (142)
69 cd04815 PA_M28_2 PA_M28_2: Pro 97.0 0.0025 5.3E-08 60.0 7.4 71 398-468 33-125 (134)
70 cd04822 PA_M28_1_3 PA_M28_1_3: 96.9 0.0046 1E-07 58.9 8.4 88 378-465 21-130 (151)
71 KOG2442 Uncharacterized conser 95.6 0.032 6.9E-07 61.2 7.7 74 400-476 91-173 (541)
72 cd02121 PA_GCPII_like PA_GCPII 95.2 0.035 7.6E-07 56.4 5.8 55 379-441 47-106 (220)
73 cd02131 PA_hNAALADL2_like PA_h 95.1 0.033 7.2E-07 52.5 4.9 38 401-440 37-74 (153)
74 PF14874 PapD-like: Flagellar- 94.9 0.74 1.6E-05 40.7 13.1 82 683-768 20-101 (102)
75 PF10633 NPCBM_assoc: NPCBM-as 93.4 0.31 6.8E-06 40.9 7.1 64 683-746 5-69 (78)
76 KOG4628 Predicted E3 ubiquitin 92.0 0.36 7.8E-06 52.0 6.8 76 391-468 63-148 (348)
77 cd04821 PA_M28_1_2 PA_M28_1_2: 90.9 0.52 1.1E-05 45.4 6.0 62 379-440 24-102 (157)
78 KOG3920 Uncharacterized conser 89.2 0.49 1.1E-05 44.3 4.1 84 379-468 66-162 (193)
79 PF11614 FixG_C: IG-like fold 87.8 6.4 0.00014 35.8 10.7 55 684-740 32-86 (118)
80 PF06030 DUF916: Bacterial pro 77.8 29 0.00063 31.9 10.6 71 682-755 26-120 (121)
81 KOG1114 Tripeptidyl peptidase 77.0 1.6 3.5E-05 52.0 2.5 25 130-154 76-100 (1304)
82 PF00345 PapD_N: Pili and flag 63.0 62 0.0013 29.4 9.5 68 684-754 15-89 (122)
83 COG1470 Predicted membrane pro 56.9 88 0.0019 35.3 10.5 63 683-746 397-461 (513)
84 COG1470 Predicted membrane pro 53.8 1.6E+02 0.0034 33.4 11.8 55 683-739 284-344 (513)
85 TIGR02745 ccoG_rdxA_fixG cytoc 53.4 71 0.0015 36.2 9.5 54 684-739 347-400 (434)
86 PF00635 Motile_Sperm: MSP (Ma 50.9 87 0.0019 27.5 8.1 52 684-739 19-70 (109)
87 PF07718 Coatamer_beta_C: Coat 47.9 1.5E+02 0.0033 27.9 9.1 68 685-754 71-138 (140)
88 PF07705 CARDB: CARDB; InterP 37.4 2.6E+02 0.0055 23.7 10.2 53 683-739 19-72 (101)
89 PF02845 CUE: CUE domain; Int 36.0 37 0.00079 24.6 2.6 25 559-583 5-29 (42)
90 PF05753 TRAP_beta: Translocon 34.5 2.4E+02 0.0053 27.9 8.9 69 683-755 38-114 (181)
91 TIGR00845 caca sodium/calcium 33.6 4.6E+02 0.01 32.8 12.6 63 673-739 406-475 (928)
92 smart00635 BID_2 Bacterial Ig- 32.7 1.2E+02 0.0025 25.4 5.6 39 713-756 4-42 (81)
93 PRK15019 CsdA-binding activato 26.5 62 0.0013 30.8 3.1 32 544-576 78-109 (147)
94 PF08260 Kinin: Insect kinin p 25.5 31 0.00067 15.9 0.4 6 495-500 3-8 (8)
95 PF12690 BsuPI: Intracellular 25.3 3.4E+02 0.0075 22.9 7.1 19 720-739 53-71 (82)
96 TIGR03391 FeS_syn_CsdE cystein 25.2 69 0.0015 30.2 3.1 34 543-577 72-105 (138)
97 smart00237 Calx_beta Domains i 24.9 4.4E+02 0.0095 22.5 9.8 63 674-739 9-76 (90)
98 PF13940 Ldr_toxin: Toxin Ldr, 24.0 64 0.0014 22.2 1.8 13 550-562 14-26 (35)
99 PF04255 DUF433: Protein of un 23.9 66 0.0014 25.0 2.3 39 541-579 10-54 (56)
100 PF07610 DUF1573: Protein of u 22.9 2.9E+02 0.0063 20.3 5.5 44 689-736 2-45 (45)
101 PRK09296 cysteine desufuration 22.3 84 0.0018 29.6 3.1 32 544-576 68-99 (138)
102 smart00546 CUE Domain that may 21.3 1.3E+02 0.0029 21.7 3.4 25 558-582 5-29 (43)
103 PF02657 SufE: Fe-S metabolism 21.2 96 0.0021 28.7 3.2 33 544-577 59-91 (125)
104 PLN03080 Probable beta-xylosid 20.9 2.6E+02 0.0056 34.4 7.7 54 684-738 685-744 (779)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.4e-52 Score=450.61 Aligned_cols=307 Identities=53% Similarity=0.892 Sum_probs=259.8
Q ss_pred eecccccccccccccccCCCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCc
Q 003970 105 LKLHTTRSWDFMGLILDNTGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNR 184 (782)
Q Consensus 105 ~~~~~~~s~~~~gl~~~~~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~ 184 (782)
++++++++++|+|+... ....+|..+++|+||+|||||||||++||+|++.. ..+++..|.+.|..+..+.. ..||+
T Consensus 1 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~ 77 (307)
T cd04852 1 YQLHTTRSPDFLGLPGA-WGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVG-GGPYPHTWPGDCVTGEDFNP-FSCNN 77 (307)
T ss_pred CCccccCCHHHcCCCCC-CCcccccccCCCCccEEEEEeCCCCCCCcCcccCC-CCCCCCCCCCcccCCCCcCc-cCcCC
Confidence 46889999999999875 22236888999999999999999999999999876 77888899999999887766 78999
Q ss_pred ceeeeEecccccccccCCCCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCC
Q 003970 185 KLIGARYYVKGFEEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGK 264 (782)
Q Consensus 185 kiig~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~ 264 (782)
|++|.++|.+++...... ....+..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++..
T Consensus 78 ki~g~~~~~~~~~~~~~~---~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~ 154 (307)
T cd04852 78 KLIGARYFSDGYDAYGGF---NSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPD 154 (307)
T ss_pred eEEEEEEcccchhhccCc---ccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCC
Confidence 999999998876543220 11224467789999999999999999887777677777788999999999999999874
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCCcccCCCceE
Q 003970 265 DSDGKCTEADILAAFDDALHDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNVAPWSI 344 (782)
Q Consensus 265 ~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vi 344 (782)
+ .+..+++++||++|++++++|||||||... ...+.+.+..++.++.++|++||+||||+|+...+.++..||++
T Consensus 155 ~---~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~--~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi 229 (307)
T cd04852 155 G---GCFGSDILAAIDQAIADGVDVISYSIGGGS--PDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVT 229 (307)
T ss_pred C---CccHHHHHHHHHHHHHcCCCEEEeCCCCCC--CCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeE
Confidence 4 588999999999999999999999999884 24566778888889999999999999999988888888899999
Q ss_pred EecccccCcccceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHH
Q 003970 345 CVAASSIDRTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEA 424 (782)
Q Consensus 345 tVgAs~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~ 424 (782)
+|||++
T Consensus 230 ~Vga~~-------------------------------------------------------------------------- 235 (307)
T cd04852 230 TVAAST-------------------------------------------------------------------------- 235 (307)
T ss_pred EEEecc--------------------------------------------------------------------------
Confidence 999721
Q ss_pred HHHHcCceEEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCC
Q 003970 425 AAKKANASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSI 504 (782)
Q Consensus 425 ~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~ 504 (782)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccceeecCceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 003970 505 SPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAY 583 (782)
Q Consensus 505 ~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~ 583 (782)
+||||+|||.+|++++..... .........|..++|||||||+|||++|||+|++|+|+|.|||++|++||+
T Consensus 236 ----~~~di~apG~~i~~~~~~~~~---~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 236 ----LKPDIAAPGVDILAAWTPEGA---DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred ----CccceeeccCceeecccCccc---cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 468999999999999875311 112223358999999999999999999999999999999999999999984
No 2
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=2.3e-49 Score=443.53 Aligned_cols=297 Identities=19% Similarity=0.199 Sum_probs=215.3
Q ss_pred cccccCCCCccCC--CCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCc----ceeeeE
Q 003970 117 GLILDNTGEVTPV--QLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNR----KLIGAR 190 (782)
Q Consensus 117 gl~~~~~~~~~~~--~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~----kiig~~ 190 (782)
+++.. +++++|. .+.+|+||+|||||||||++||||.+.- ..-+....|.. .++ .+++ .+.| +
T Consensus 297 gLd~i-~~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni--~~n~~el~Grd----giD---dD~nG~vdd~~G-~ 365 (639)
T PTZ00262 297 GLDLT-RLDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNI--DVNVKELHGRK----GID---DDNNGNVDDEYG-A 365 (639)
T ss_pred Ccchh-CchHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhc--ccccccccCcc----ccc---cccCCccccccc-c
Confidence 44443 5666776 4568999999999999999999998542 10000011110 000 0011 1111 2
Q ss_pred ecccccccccCCCCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCC
Q 003970 191 YYVKGFEEEYGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKC 270 (782)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~ 270 (782)
+|.+ ...+|.|..||||||||||||...++. .+.||||+|+|+++|+++..+ .+
T Consensus 366 nfVd---------------~~~~P~D~~GHGTHVAGIIAA~gnN~~--------Gi~GVAP~AkLi~vKVld~~G---~G 419 (639)
T PTZ00262 366 NFVN---------------NDGGPMDDNYHGTHVSGIISAIGNNNI--------GIVGVDKRSKLIICKALDSHK---LG 419 (639)
T ss_pred cccC---------------CCCCCCCCCCcchHHHHHHhccccCCC--------ceeeeecccccceEEEecCCC---Cc
Confidence 2221 123568899999999999999754322 368999999999999998776 57
Q ss_pred CHHHHHHHHHHHhhcCCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCC--------------c
Q 003970 271 TEADILAAFDDALHDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSL--------------V 336 (782)
Q Consensus 271 ~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--------------~ 336 (782)
..+++++||+||++.|++|||||||... +...+..++.+|.++|++||+||||+|+.... +
T Consensus 420 ~~sdI~~AI~yA~~~GA~VINmSlG~~~-----~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~Y 494 (639)
T PTZ00262 420 RLGDMFKCFDYCISREAHMINGSFSFDE-----YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVY 494 (639)
T ss_pred cHHHHHHHHHHHHHCCCCEEEeccccCC-----ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccC
Confidence 8899999999999999999999999763 33467788889999999999999999854211 1
Q ss_pred cc----CCCceEEecccccCcccceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEee
Q 003970 337 QN----VAPWSICVAASSIDRTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFS 412 (782)
Q Consensus 337 ~~----~ap~vitVgAs~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~ 412 (782)
+. ..|++|+|||...+..
T Consensus 495 Paa~s~~~~nVIaVGAv~~d~~---------------------------------------------------------- 516 (639)
T PTZ00262 495 PPILSKKLRNVITVSNLIKDKN---------------------------------------------------------- 516 (639)
T ss_pred ChhhhccCCCEEEEeeccCCCC----------------------------------------------------------
Confidence 11 1367788887432110
Q ss_pred CCCCccHHHHHHHHHHcCceEEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCc
Q 003970 413 TMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPT 492 (782)
Q Consensus 413 g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 492 (782)
....
T Consensus 517 ----------------------------------------------------------------------------~~~s 520 (639)
T PTZ00262 517 ----------------------------------------------------------------------------NQYS 520 (639)
T ss_pred ----------------------------------------------------------------------------Cccc
Confidence 0112
Q ss_pred cccccCCCCCCCCCCCcccceeecCceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHH
Q 003970 493 VAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPA 572 (782)
Q Consensus 493 ~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~ 572 (782)
.+.||++|.. ++||+|||++|+++++.+ .|..++|||||||||||+||||++++|+|++.
T Consensus 521 ~s~~Snyg~~-------~VDIaAPG~dI~St~p~g-------------~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~ 580 (639)
T PTZ00262 521 LSPNSFYSAK-------YCQLAAPGTNIYSTFPKN-------------SYRKLNGTSMAAPHVAAIASLILSINPSLSYE 580 (639)
T ss_pred ccccccCCCC-------cceEEeCCCCeeeccCCC-------------ceeecCCCchhHHHHHHHHHHHHhhCCCCCHH
Confidence 3456677633 369999999999999875 89999999999999999999999999999999
Q ss_pred HHHHHHHhccccCCCCCCccccCCCCCcCCCCCcc-ccccCccccCCCceee
Q 003970 573 AIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIG-AGHINPMKAMDPGLIY 623 (782)
Q Consensus 573 ~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G-~G~vn~~~Al~~glv~ 623 (782)
||+++|++||.++... +..+| .|+||+.+|++..+-+
T Consensus 581 qV~~iL~~TA~~l~~~--------------~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 581 EVIRILKESIVQLPSL--------------KNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred HHHHHHHHhCccCCCC--------------CCccccCcEEcHHHHHHHHHhc
Confidence 9999999999875321 11233 3899999999866644
No 3
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=3.4e-48 Score=435.16 Aligned_cols=410 Identities=23% Similarity=0.210 Sum_probs=259.6
Q ss_pred CCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEeccc-ccccccCCCCCCCCCC
Q 003970 132 AYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVK-GFEEEYGPLNASTNRE 210 (782)
Q Consensus 132 ~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~-~~~~~~~~~~~~~~~~ 210 (782)
++|+||+|||||||||+.||+|++.++.+++...|++....+.. .....+..++.+ ..+...... ...+
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~-------~~~~~~~~~~~~~~i~~~~~~~---~p~~ 70 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPP-------PGGYYGGGEYTEEIINAALASD---NPYD 70 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCC-------CccccCceEEeHHHHHHHHhcC---Cccc
Confidence 47999999999999999999999888889999999987664321 112222222222 111111110 1112
Q ss_pred CCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCC-------CCCCHHHHHHHHHHHh
Q 003970 211 YRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSD-------GKCTEADILAAFDDAL 283 (782)
Q Consensus 211 ~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~-------~~~~~~~i~~ai~~a~ 283 (782)
.....|..||||||||||||+..++ ..+.||||+|+|+++|++...+.. ..+..++++.||+|++
T Consensus 71 ~~~~~D~~GHGThvAGIiag~~~~~--------~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~ 142 (455)
T cd07478 71 IVPSRDENGHGTHVAGIAAGNGDNN--------PDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLY 142 (455)
T ss_pred cCcCCCCCCchHHHHHHHhcCCCCC--------CCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHH
Confidence 3456789999999999999986432 346899999999999999877521 0267889999999998
Q ss_pred hcC-----CcEEEecccCCCCCCCCccChHHHHHHhhhcc-CceEEEecCCCCCCCCCcccC-----CCc--eEEecccc
Q 003970 284 HDG-----VDVISASFGESPPLRPFFASNADIGSFNAMQH-GVTVVFSGGNDGPEPSLVQNV-----APW--SICVAASS 350 (782)
Q Consensus 284 ~~g-----vdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~~~~~~-----ap~--vitVgAs~ 350 (782)
+.. +.|||||||...+ .+...+.++.++..+..+ |++||+||||+|....+.... ... -+.|+.
T Consensus 143 ~~a~~~~~p~VInlSlG~~~g-~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~-- 219 (455)
T cd07478 143 DKALELNKPLVINISLGTNFG-SHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGE-- 219 (455)
T ss_pred HHHHHhCCCeEEEEccCcCCC-CCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECC--
Confidence 753 5699999998753 344566777777777665 999999999999754333221 111 133433
Q ss_pred cCcccceeEEeCCccEEEeeeeecccce-------------eeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCc
Q 003970 351 IDRTFPTEIVVNSDFSIVGESFISTEVK-------------AKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSV 417 (782)
Q Consensus 351 ~d~~~~~~~~~~~~~~~~g~~~~~~~~~-------------~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~ 417 (782)
.++.+..++|......+.-.-+.+.... +.++.... ..|.... .+....|.-.+..+-.
T Consensus 220 ~~~~~~~eiW~~~~d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t----~i~v~y~-~~~~~~g~~~i~i~~~--- 291 (455)
T cd07478 220 GEKGFNLEIWGDFPDRFSVSIISPSGESSGRINPGIGGSESYKFVFEGT----TVYVYYY-LPEPYTGDQLIFIRFK--- 291 (455)
T ss_pred CCcceEEEEecCCCCEEEEEEECCCCCccCccCcCCCcceeEEEEECCe----EEEEEEc-CCCCCCCCeEEEEEcc---
Confidence 2233333444432222111111110000 11111111 1111111 1122233222222211
Q ss_pred cHHHHHHHHHHcCceEEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCc----cccC-CCCCCc
Q 003970 418 KTEEAEAAAKKANASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSK----TSIG-KVPAPT 492 (782)
Q Consensus 418 ~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~----~~~~-~~~~~~ 492 (782)
-...|.|.+.++........++.|+|.-.+...+..+ +. .....+.++-... ++.. ....+.
T Consensus 292 --------~~~~GiW~i~~~~~~~~~g~~~~Wlp~~~~~~~~t~f----~~-~~~~~tit~Pa~~~~vitVga~~~~~~~ 358 (455)
T cd07478 292 --------NIKPGIWKIRLTGVSITDGRFDAWLPSRGLLSENTRF----LE-PDPYTTLTIPGTARSVITVGAYNQNNNS 358 (455)
T ss_pred --------CCCccceEEEEEeccCCCceEEEEecCcCcCCCCCEe----ec-CCCCceEecCCCCCCcEEEEEEeCCCCc
Confidence 1345888888887765444566677754443322211 11 2222222221111 1111 123456
Q ss_pred cccccCCCCCCCCCCCcccceeecCceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhC------
Q 003970 493 VAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAH------ 566 (782)
Q Consensus 493 ~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~------ 566 (782)
++.||||||+. ++++||||+|||++|+++.+.+ .|..++|||||||||||++|||+|++
T Consensus 359 ~~~~Ss~G~~~--~~~~kpdi~APG~~i~s~~~~~-------------~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~ 423 (455)
T cd07478 359 IAIFSGRGPTR--DGRIKPDIAAPGVNILTASPGG-------------GYTTRSGTSVAAAIVAGACALLLQWGIVRGND 423 (455)
T ss_pred ccCccCCCcCC--CCCcCceEEecCCCEEEeecCC-------------cEEeeCcHHHHHHHHHHHHHHHHHhchhccCC
Confidence 99999999995 7999999999999999999875 89999999999999999999999975
Q ss_pred CCCCHHHHHHHHHhccccCCCCCCccccCCCCCcCCCCCcccc
Q 003970 567 PNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAG 609 (782)
Q Consensus 567 P~lsp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G 609 (782)
|.|++++||++|++||++... ..+++.+||||
T Consensus 424 p~~~~~~ik~~L~~tA~~~~~-----------~~~pn~~~GyG 455 (455)
T cd07478 424 PYLYGEKIKTYLIRGARRRPG-----------DEYPNPEWGYG 455 (455)
T ss_pred CCCCHHHHHHHHHHhCccCCC-----------CCCCCCCCCCC
Confidence 567999999999999997642 24577899998
No 4
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.6e-48 Score=412.53 Aligned_cols=289 Identities=29% Similarity=0.306 Sum_probs=191.0
Q ss_pred CCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCCCCCCC
Q 003970 134 GDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRS 213 (782)
Q Consensus 134 G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (782)
|+||+|+|||||||.+||||.+...+. |.. .|+ +...+....++.. .....
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~~-----~~~------~~d----~~~~~~~g~d~~~--------------~~~~~ 51 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNFS-----WKL------KFD----YKAYLLPGMDKWG--------------GFYVI 51 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCCC-----ccc------ccC----cCCCccCCcCCCC--------------CccCC
Confidence 799999999999999999996443111 000 000 0011111110000 01134
Q ss_pred CCCCCCCchhhhhhhccccccCCcccccC-CcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHH-------HHHHH--h
Q 003970 214 ARDFLGHGTHTASTAAGSIAKNAGFFGLG-RGIARGGAPRARLAVYKICWGKDSDGKCTEADILA-------AFDDA--L 283 (782)
Q Consensus 214 ~~D~~gHGTHVAgiaag~~~~~~~~~G~~-~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~-------ai~~a--~ 283 (782)
+.|.+||||||||||||+...+.+.+++. ...+.||||+|+|+.+|++...+ .+....+.+ +++|+ .
T Consensus 52 ~~D~~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~---~~~~~~~~~g~~~~~~~~~~~~~~ 128 (311)
T cd07497 52 MYDFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGD---VIYAWLWTAGFDPVDRKLSWIYTG 128 (311)
T ss_pred CCCccccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCC---cchhhhhhhccchhhhhhhhhhcc
Confidence 67899999999999999864433322221 23579999999999999997543 232333333 33443 4
Q ss_pred hcCCcEEEecccCCCCCCC-C--ccChHHHHHHh-hhccCceEEEecCCCCCCCCCcccC--CCceEEecccccCcccce
Q 003970 284 HDGVDVISASFGESPPLRP-F--FASNADIGSFN-AMQHGVTVVFSGGNDGPEPSLVQNV--APWSICVAASSIDRTFPT 357 (782)
Q Consensus 284 ~~gvdVIn~SlG~~~~~~~-~--~~~~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~~~~~~--ap~vitVgAs~~d~~~~~ 357 (782)
+++++|||||||....... + ..+..+..... +.++|+++|+||||+|+...++..+ ++++|+|||++.....+.
T Consensus 129 ~~~~~VIN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~ 208 (311)
T cd07497 129 GPRVDVISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPF 208 (311)
T ss_pred CCCceEEEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccch
Confidence 6899999999998631000 0 11222322222 2489999999999999876555544 689999999753211000
Q ss_pred eEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEe
Q 003970 358 EIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFA 437 (782)
Q Consensus 358 ~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~ 437 (782)
.+.
T Consensus 209 ~~~----------------------------------------------------------------------------- 211 (311)
T cd07497 209 YLF----------------------------------------------------------------------------- 211 (311)
T ss_pred hhh-----------------------------------------------------------------------------
Confidence 000
Q ss_pred cCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecC
Q 003970 438 EPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPG 517 (782)
Q Consensus 438 n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG 517 (782)
.......+.++.||||||+. ++++||||+|||
T Consensus 212 ----------------------------------------------~~~~~~~~~~~~fSs~Gp~~--~g~~kPdv~ApG 243 (311)
T cd07497 212 ----------------------------------------------GYLPGGSGDVVSWSSRGPSI--AGDPKPDLAAIG 243 (311)
T ss_pred ----------------------------------------------ccccCCCCCccccccCCCCc--ccCCCCceeccC
Confidence 00011245689999999995 699999999999
Q ss_pred ceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCC------CCCHHHHHHHHHhcc
Q 003970 518 IGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHP------NWSPAAIRSALMTTA 582 (782)
Q Consensus 518 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P------~lsp~~Ik~~L~~TA 582 (782)
++|+++.+...... .......|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 244 ~~i~s~~~~~~~~~---~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 244 AFAWAPGRVLDSGG---ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred cceEeecccCCCCc---ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 99999877543211 011223799999999999999999999999986 689999999999997
No 5
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=1e-47 Score=402.18 Aligned_cols=244 Identities=28% Similarity=0.346 Sum_probs=199.2
Q ss_pred CCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCC
Q 003970 128 PVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNAST 207 (782)
Q Consensus 128 ~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 207 (782)
|..+++|+||+|||||||||.+||+|.+.. . . .+|.
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~--~------------~----------------~~~~-------------- 36 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVK--E------------R----------------TNWT-------------- 36 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccc--c------------c----------------cccC--------------
Confidence 889999999999999999999999996321 0 0 0010
Q ss_pred CCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcCC
Q 003970 208 NREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGV 287 (782)
Q Consensus 208 ~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~gv 287 (782)
+.....|..||||||||||+|+.. .+.||||+|+|+.+|++.+.+ ....++++++|+||+++++
T Consensus 37 --~~~~~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~---~~~~~~~~~a~~~a~~~~~ 100 (255)
T cd07479 37 --NEKTLDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQ---VSYTSWFLDAFNYAILTKI 100 (255)
T ss_pred --CCCCCCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCC---CchHHHHHHHHHhhhhcCC
Confidence 011345778999999999998742 248999999999999998765 4677889999999999999
Q ss_pred cEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCCcccC--CCceEEecccccCcccceeEEeCCcc
Q 003970 288 DVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNV--APWSICVAASSIDRTFPTEIVVNSDF 365 (782)
Q Consensus 288 dVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~--ap~vitVgAs~~d~~~~~~~~~~~~~ 365 (782)
||||||||... +.+.++..++.++.++|++||+||||+|+...+...+ .+++|+|||...
T Consensus 101 ~Vin~S~G~~~----~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~-------------- 162 (255)
T cd07479 101 DVLNLSIGGPD----FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDF-------------- 162 (255)
T ss_pred CEEEeeccCCC----CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeecc--------------
Confidence 99999999763 2345666677788899999999999999865554443 588999998431
Q ss_pred EEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCcccc
Q 003970 366 SIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIA 445 (782)
Q Consensus 366 ~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~ 445 (782)
T Consensus 163 -------------------------------------------------------------------------------- 162 (255)
T cd07479 163 -------------------------------------------------------------------------------- 162 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCC----CCCCcccceeecCceEE
Q 003970 446 EVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSI----SPDILKPDITAPGIGVL 521 (782)
Q Consensus 446 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~----~~~~~KPDI~APG~~I~ 521 (782)
.+.++.|||+|++.. ..+++||||+|||.+|+
T Consensus 163 --------------------------------------------~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~ 198 (255)
T cd07479 163 --------------------------------------------DDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVY 198 (255)
T ss_pred --------------------------------------------CCccccccCCCCCcccccCCCCCcCccEEecCCCee
Confidence 345689999996531 35788999999999999
Q ss_pred eecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCC----CCCHHHHHHHHHhccccCC
Q 003970 522 AAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHP----NWSPAAIRSALMTTAYTRD 586 (782)
Q Consensus 522 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P----~lsp~~Ik~~L~~TA~~~~ 586 (782)
++.... .|..++|||||||||||++|||+|++| .++|.+||++|++||+++.
T Consensus 199 ~~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 199 GSKLKG-------------GCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred ccccCC-------------CeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 876654 788999999999999999999999998 7999999999999999753
No 6
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=2.1e-47 Score=402.81 Aligned_cols=271 Identities=24% Similarity=0.218 Sum_probs=200.2
Q ss_pred CCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCCCC
Q 003970 131 LAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNRE 210 (782)
Q Consensus 131 ~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~ 210 (782)
+++|+||+|+|||||||..||+|.+-. -.. +.+...+.. .
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~-~~~------------------------l~~~~~~~~---------------~ 40 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQA-SGD------------------------LPGNVNVLG---------------D 40 (275)
T ss_pred CCCCCceEEEEEeCCcccccccccccc-CCC------------------------CCcceeecc---------------c
Confidence 579999999999999999999654322 011 111100100 0
Q ss_pred CCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcCCcEE
Q 003970 211 YRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVI 290 (782)
Q Consensus 211 ~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~gvdVI 290 (782)
.....|..+|||||||||+ ||||+|+|+.+|+. ...+++++||+||+++|++||
T Consensus 41 ~~~~~d~~gHGT~vAgii~------------------GvAP~a~l~~~~~~--------~~~~~i~~ai~~a~~~g~~Vi 94 (275)
T cd05562 41 LDGGSGGGDEGRAMLEIIH------------------DIAPGAELAFHTAG--------GGELDFAAAIRALAAAGADII 94 (275)
T ss_pred cCCCCCCCchHHHHHHHHh------------------ccCCCCEEEEEecC--------CCHHHHHHHHHHHHHcCCCEE
Confidence 1234578899999999994 78999999998873 447899999999999999999
Q ss_pred EecccCCCCCCCCccChHHHHHHhhhcc-CceEEEecCCCCCCCCC-cccCCCceEEecccccCcccceeEEeCCccEEE
Q 003970 291 SASFGESPPLRPFFASNADIGSFNAMQH-GVTVVFSGGNDGPEPSL-VQNVAPWSICVAASSIDRTFPTEIVVNSDFSIV 368 (782)
Q Consensus 291 n~SlG~~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~~-~~~~ap~vitVgAs~~d~~~~~~~~~~~~~~~~ 368 (782)
|||||.... ..+.+..+..++.++.++ |++||+||||+|+.... .+...|++|+|||++.+.......
T Consensus 95 n~S~g~~~~-~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s--------- 164 (275)
T cd05562 95 VDDIGYLNE-PFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS--------- 164 (275)
T ss_pred EecccccCC-CcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc---------
Confidence 999998641 122345677788888887 99999999999975432 244579999999976432110000
Q ss_pred eeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCccccccc
Q 003970 369 GESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEVD 448 (782)
Q Consensus 369 g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~ 448 (782)
|
T Consensus 165 ------------------------~------------------------------------------------------- 165 (275)
T cd05562 165 ------------------------D------------------------------------------------------- 165 (275)
T ss_pred ------------------------c-------------------------------------------------------
Confidence 0
Q ss_pred cccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCc-eEEeecCCC
Q 003970 449 IIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGI-GVLAAWPPN 527 (782)
Q Consensus 449 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~-~I~sa~~~~ 527 (782)
.. ........+.||++||+. ++++||||+|||. ++.+.+..+
T Consensus 166 ---------------------~~--------------~~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~~ 208 (275)
T cd05562 166 ---------------------PA--------------PGGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDGD 208 (275)
T ss_pred ---------------------cc--------------cCCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCcCC
Confidence 00 000012345678889984 6889999999975 445544433
Q ss_pred CCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCcCCCCCcc
Q 003970 528 TPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIG 607 (782)
Q Consensus 528 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G 607 (782)
.|..++|||||||||||++|||+|++|+|++++||++|++||+++.. +..+..||
T Consensus 209 -------------~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~------------~g~d~~~G 263 (275)
T cd05562 209 -------------GPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGE------------PGYDNASG 263 (275)
T ss_pred -------------ceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC------------CCCCCCcC
Confidence 78999999999999999999999999999999999999999987642 22556899
Q ss_pred ccccCccccCC
Q 003970 608 AGHINPMKAMD 618 (782)
Q Consensus 608 ~G~vn~~~Al~ 618 (782)
||+||+.+|++
T Consensus 264 ~G~vda~~Av~ 274 (275)
T cd05562 264 SGLVDADRAVA 274 (275)
T ss_pred cCcccHHHHhh
Confidence 99999999986
No 7
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=2.3e-46 Score=411.38 Aligned_cols=314 Identities=29% Similarity=0.339 Sum_probs=233.9
Q ss_pred ccCCCCC-CCCCcEEEEeccccCCCCCCCCCCCCCCCCCC-----CccceeeccCcCCCCcccCcceeeeEecccccccc
Q 003970 126 VTPVQLA-YGDDIVVGIFDTGVWPESESFQEEPSMSPIPS-----SWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEE 199 (782)
Q Consensus 126 ~~~~~~~-~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~-----~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~ 199 (782)
++|+++. +|+||+|+|||||||++||+|.+.. ..+... .+...+.. .+. .+++.+++..+.|.+.....
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~ 75 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDD-DSKAKYSEEFEAKKKKAGI--GYG--KYYNEKVPFAYNYADNNDDI 75 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCC-CcccccchhhhhhhhcccC--CCC--cccccCCCeeEcCCCCCCcc
Confidence 3788887 9999999999999999999998664 111100 11111111 111 45667777777776542211
Q ss_pred cCCCCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeC--CCCCCCCCHHHHHH
Q 003970 200 YGPLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWG--KDSDGKCTEADILA 277 (782)
Q Consensus 200 ~~~~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~--~~~~~~~~~~~i~~ 277 (782)
....|..+|||||||||+|...+.. .+..+.||||+|+|+.+|++.. .. .+....+++
T Consensus 76 ------------~~~~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~---~~~~~~~~~ 135 (346)
T cd07475 76 ------------LDEDDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGG---STYDDAYAK 135 (346)
T ss_pred ------------CCCCCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCC---CCCHHHHHH
Confidence 1245789999999999999875421 1235799999999999999974 33 578889999
Q ss_pred HHHHHhhcCCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCCcc----------------cCCC
Q 003970 278 AFDDALHDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQ----------------NVAP 341 (782)
Q Consensus 278 ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~----------------~~ap 341 (782)
|++++++.|++|||||||.... .......+..++.++.++|++||+||||+|....... ...+
T Consensus 136 ai~~a~~~g~~Vin~S~G~~~~-~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~ 214 (346)
T cd07475 136 AIEDAVKLGADVINMSLGSTAG-FVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATAD 214 (346)
T ss_pred HHHHHHHcCCCEEEECCCcCCC-CCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCC
Confidence 9999999999999999999852 2234556777888899999999999999985432211 1245
Q ss_pred ceEEecccccCcccceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHH
Q 003970 342 WSICVAASSIDRTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEE 421 (782)
Q Consensus 342 ~vitVgAs~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~ 421 (782)
++|+||++...
T Consensus 215 ~~i~Vga~~~~--------------------------------------------------------------------- 225 (346)
T cd07475 215 DVLTVASANKK--------------------------------------------------------------------- 225 (346)
T ss_pred CceEEeecccc---------------------------------------------------------------------
Confidence 66777663310
Q ss_pred HHHHHHHcCceEEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCC
Q 003970 422 AEAAAKKANASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGP 501 (782)
Q Consensus 422 k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp 501 (782)
......+.++.||+|||
T Consensus 226 ---------------------------------------------------------------~~~~~~~~~~~~S~~G~ 242 (346)
T cd07475 226 ---------------------------------------------------------------VPNPNGGQMSGFSSWGP 242 (346)
T ss_pred ---------------------------------------------------------------cCCCCCCccCCCcCCCC
Confidence 00112456789999999
Q ss_pred CCCCCCCcccceeecCceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHh----CCCCCHHH----
Q 003970 502 SSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSA----HPNWSPAA---- 573 (782)
Q Consensus 502 ~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~P~lsp~~---- 573 (782)
+. .+++||||+|||.+|+++...+ .|..++|||||||+|||++|||+|+ +|.|++.+
T Consensus 243 ~~--~~~~~pdi~apG~~i~s~~~~~-------------~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ 307 (346)
T cd07475 243 TP--DLDLKPDITAPGGNIYSTVNDN-------------TYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDL 307 (346)
T ss_pred Cc--ccCcCCeEEeCCCCeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHH
Confidence 95 6899999999999999988764 7899999999999999999999998 79999877
Q ss_pred HHHHHHhccccCCCCCCccccCCCCCcCCCCCccccccCccccCC
Q 003970 574 IRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAGHINPMKAMD 618 (782)
Q Consensus 574 Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 618 (782)
||++|++||.+..... .....+.+..+|+|+||+.+|++
T Consensus 308 ik~~l~~ta~~~~~~~------~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 308 VKNLLMNTATPPLDSE------DTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred HHHHHHhcCCcccccC------CCCccCCccccCcchhcHHHhhC
Confidence 7889999998532111 33455677889999999999985
No 8
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.3e-46 Score=405.02 Aligned_cols=297 Identities=30% Similarity=0.361 Sum_probs=229.3
Q ss_pred CCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCC
Q 003970 124 GEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPL 203 (782)
Q Consensus 124 ~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~ 203 (782)
++.+|+.+++|+||+|||||+|||++||+|.+.. .+ +.++.+.+++..+.....
T Consensus 2 v~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~--~~---------------------~~~~~~~~d~~~~~~~~~--- 55 (312)
T cd07489 2 VDKLHAEGITGKGVKVAVVDTGIDYTHPALGGCF--GP---------------------GCKVAGGYDFVGDDYDGT--- 55 (312)
T ss_pred hhhHHhCCCCCCCCEEEEEECCCCCCChhhhcCC--CC---------------------CceeccccccCCcccccc---
Confidence 5679999999999999999999999999997542 11 011122222221100000
Q ss_pred CCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHh
Q 003970 204 NASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDAL 283 (782)
Q Consensus 204 ~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~ 283 (782)
....+...+.|..+|||||||||+|...+ ..+.||||+|+|+.+|++...+ ....+.++++|++|+
T Consensus 56 --~~~~~~~~~~d~~gHGT~vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~~~~---~~~~~~~~~ai~~a~ 121 (312)
T cd07489 56 --NPPVPDDDPMDCQGHGTHVAGIIAANPNA---------YGFTGVAPEATLGAYRVFGCSG---STTEDTIIAAFLRAY 121 (312)
T ss_pred --cCCCCCCCCCCCCCcHHHHHHHHhcCCCC---------CceEEECCCCEEEEEEeecCCC---CCCHHHHHHHHHHHH
Confidence 01112345677899999999999998643 2358999999999999998665 577888999999999
Q ss_pred hcCCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCC---CcccCCCceEEecccccCcccceeEE
Q 003970 284 HDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPS---LVQNVAPWSICVAASSIDRTFPTEIV 360 (782)
Q Consensus 284 ~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~---~~~~~ap~vitVgAs~~d~~~~~~~~ 360 (782)
+++++|||+|||.. ..+....+...+.++.++|+++|+||||+|.... ..+...+++|+||+.+
T Consensus 122 ~~~~~iIn~S~g~~---~~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~---------- 188 (312)
T cd07489 122 EDGADVITASLGGP---SGWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD---------- 188 (312)
T ss_pred hcCCCEEEeCCCcC---CCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec----------
Confidence 99999999999987 3455577777888889999999999999986532 2233468899998721
Q ss_pred eCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCC
Q 003970 361 VNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPM 440 (782)
Q Consensus 361 ~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~ 440 (782)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceE
Q 003970 441 TELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGV 520 (782)
Q Consensus 441 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I 520 (782)
+.||++||+. +...||||+|||+++
T Consensus 189 -----------------------------------------------------~~~s~~g~~~--~~~~kpdv~ApG~~i 213 (312)
T cd07489 189 -----------------------------------------------------SYFSSWGPTN--ELYLKPDVAAPGGNI 213 (312)
T ss_pred -----------------------------------------------------CCccCCCCCC--CCCcCccEEcCCCCE
Confidence 4689999995 588999999999999
Q ss_pred EeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhC-CCCCHHHHHHHHHhccccCCCCCCccccCCCCC
Q 003970 521 LAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAH-PNWSPAAIRSALMTTAYTRDTSHDSILAGGSMK 599 (782)
Q Consensus 521 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-P~lsp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~ 599 (782)
+++++.... .|..++|||||||+|||++|||+|++ |.+++.+||++|++||.++....... ....
T Consensus 214 ~~~~~~~~~-----------~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~---~~~~ 279 (312)
T cd07489 214 LSTYPLAGG-----------GYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTS---ALPD 279 (312)
T ss_pred EEeeeCCCC-----------ceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCc---cccC
Confidence 999887521 58999999999999999999999999 99999999999999999865432110 1111
Q ss_pred cCCCCCccccccCccccCCCcee
Q 003970 600 VSDPFDIGAGHINPMKAMDPGLI 622 (782)
Q Consensus 600 ~~~~~~~G~G~vn~~~Al~~glv 622 (782)
.++...+|||+||+.+|++..-.
T Consensus 280 ~~~~~~~G~G~vn~~~a~~~~~~ 302 (312)
T cd07489 280 LAPVAQQGAGLVNAYKALYATTT 302 (312)
T ss_pred CCCHhhcCcceeeHHHHhcCCcc
Confidence 35667999999999999995433
No 9
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.3e-45 Score=391.25 Aligned_cols=293 Identities=37% Similarity=0.496 Sum_probs=217.9
Q ss_pred CCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCCCCCCC
Q 003970 134 GDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRS 213 (782)
Q Consensus 134 G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (782)
|+||+|||||+|||++||+|.+.. .+++++...+.|.....................
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG-----------------------FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDAS 57 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC-----------------------CCCCceeeeeECccCCCCcccccccccccccCC
Confidence 899999999999999999997432 112333433433322111100000000001123
Q ss_pred CCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcCCcEEEec
Q 003970 214 ARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVISAS 293 (782)
Q Consensus 214 ~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~S 293 (782)
..|..+|||||||+|+|...+ ...+.|+||+|+|+.+|++...+ .+...++++||+|+++++++|||||
T Consensus 58 ~~~~~~HGT~vAgiiag~~~n--------~~~~~Giap~a~i~~~~~~~~~~---~~~~~~~~~ai~~a~~~~~~Iin~S 126 (295)
T cd07474 58 AGDATGHGTHVAGIIAGNGVN--------VGTIKGVAPKADLYAYKVLGPGG---SGTTDVIIAAIEQAVDDGMDVINLS 126 (295)
T ss_pred CCCCCCcHHHHHHHHhcCCCc--------cCceEeECCCCeEEEEEeecCCC---CCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 456899999999999998644 22468999999999999998555 5888999999999999999999999
Q ss_pred ccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCCc--ccCCCceEEecccccCcccceeEEeCCccEEEeee
Q 003970 294 FGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLV--QNVAPWSICVAASSIDRTFPTEIVVNSDFSIVGES 371 (782)
Q Consensus 294 lG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~ap~vitVgAs~~d~~~~~~~~~~~~~~~~g~~ 371 (782)
||... ....+.+..++.++.++|+++|+||||+|...... +...+++|+||++....
T Consensus 127 ~g~~~---~~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~------------------ 185 (295)
T cd07474 127 LGSSV---NGPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVAD------------------ 185 (295)
T ss_pred CCCCC---CCCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccC------------------
Confidence 99873 33456778888899999999999999998765554 33468999999854100
Q ss_pred eecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCcccccccccc
Q 003970 372 FISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEVDIIP 451 (782)
Q Consensus 372 ~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p 451 (782)
T Consensus 186 -------------------------------------------------------------------------------- 185 (295)
T cd07474 186 -------------------------------------------------------------------------------- 185 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEEeecCCCCCCC
Q 003970 452 TVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPT 531 (782)
Q Consensus 452 ~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~ 531 (782)
.........|+++|+.. ....+||||+|||.+|++++....
T Consensus 186 -----------------------------------~~~~~~~~~~~s~~~~~-~~~~~kpdv~apG~~i~~~~~~~~--- 226 (295)
T cd07474 186 -----------------------------------VAEADTVGPSSSRGPPT-SDSAIKPDIVAPGVDIMSTAPGSG--- 226 (295)
T ss_pred -----------------------------------cCCCCceeccCCCCCCC-CCCCcCCCEECCcCceEeeccCCC---
Confidence 00022334555555433 468899999999999999988731
Q ss_pred CCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCcCCCCCcccccc
Q 003970 532 LLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAGHI 611 (782)
Q Consensus 532 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~v 611 (782)
..|..++|||||||+|||++|||+|++|.|++++||++|++||.+....+. ...++..+|+|+|
T Consensus 227 --------~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~--------~~~~~~~~G~G~l 290 (295)
T cd07474 227 --------TGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG--------VVYPVSRQGAGRV 290 (295)
T ss_pred --------CceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC--------CcCChhccCccee
Confidence 278999999999999999999999999999999999999999998765331 1124568999999
Q ss_pred Ccccc
Q 003970 612 NPMKA 616 (782)
Q Consensus 612 n~~~A 616 (782)
|+.+|
T Consensus 291 ~~~~A 295 (295)
T cd07474 291 DALRA 295 (295)
T ss_pred ccccC
Confidence 99887
No 10
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=4e-45 Score=384.40 Aligned_cols=250 Identities=26% Similarity=0.240 Sum_probs=203.0
Q ss_pred cCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCC
Q 003970 127 TPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNAS 206 (782)
Q Consensus 127 ~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 206 (782)
+|..+++|+||+|||||+|||.+||+|++.. ..+.. .+..
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~-~~~~~---------------------------~~~~------------ 41 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGAN-LTPLF---------------------------TYAA------------ 41 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCc-ccccc---------------------------Cccc------------
Confidence 7999999999999999999999999997542 11100 0000
Q ss_pred CCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcC
Q 003970 207 TNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDG 286 (782)
Q Consensus 207 ~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g 286 (782)
......|..+||||||||++|+.. ..+.||||+|+|+.+|++...+. .++..++++||+||+++|
T Consensus 42 ---~~~~~~~~~gHGT~VAgii~g~~~----------~~~~GvAp~a~i~~~~v~~~~~~--~~~~~~i~~ai~~a~~~g 106 (267)
T cd07476 42 ---AACQDGGASAHGTHVASLIFGQPC----------SSVEGIAPLCRGLNIPIFAEDRR--GCSQLDLARAINLALEQG 106 (267)
T ss_pred ---cCCCCCCCCCcHHHHHHHHhcCCC----------CCceeECcCCeEEEEEEEeCCCC--CCCHHHHHHHHHHHHHCC
Confidence 012345678999999999998752 13589999999999999986652 245789999999999999
Q ss_pred CcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCCcccCCCceEEecccccCcccceeEEeCCccE
Q 003970 287 VDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRTFPTEIVVNSDFS 366 (782)
Q Consensus 287 vdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~d~~~~~~~~~~~~~~ 366 (782)
++|||||||.... .......+..++.+|.++|+++|+||||+|.....++...|++|+|||+..
T Consensus 107 ~~VIN~S~G~~~~-~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~--------------- 170 (267)
T cd07476 107 AHIINISGGRLTQ-TGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDD--------------- 170 (267)
T ss_pred CCEEEecCCcCCC-CCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecC---------------
Confidence 9999999997631 223345677888889999999999999999776666677899999998431
Q ss_pred EEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCccccc
Q 003970 367 IVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAE 446 (782)
Q Consensus 367 ~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~ 446 (782)
T Consensus 171 -------------------------------------------------------------------------------- 170 (267)
T cd07476 171 -------------------------------------------------------------------------------- 170 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEEeecCC
Q 003970 447 VDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPP 526 (782)
Q Consensus 447 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~ 526 (782)
.+.++.||++|+.. .||||+|||.+|+++.+.
T Consensus 171 -------------------------------------------~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~ 202 (267)
T cd07476 171 -------------------------------------------DGLPLKFSNWGADY-----RKKGILAPGENILGAALG 202 (267)
T ss_pred -------------------------------------------CCCeeeecCCCCCC-----CCceEEecCCCceeecCC
Confidence 22457899999863 379999999999999887
Q ss_pred CCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCC----CCHHHHHHHHHhccccCCCC
Q 003970 527 NTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPN----WSPAAIRSALMTTAYTRDTS 588 (782)
Q Consensus 527 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~----lsp~~Ik~~L~~TA~~~~~~ 588 (782)
+ .|..++|||||||||||++|||+|++|. ++|++||++|++||.++...
T Consensus 203 ~-------------~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~~ 255 (267)
T cd07476 203 G-------------EVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDPE 255 (267)
T ss_pred C-------------CeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCCc
Confidence 5 7999999999999999999999999887 99999999999999987643
No 11
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=7.1e-45 Score=388.43 Aligned_cols=272 Identities=26% Similarity=0.324 Sum_probs=191.5
Q ss_pred CCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccc----cCCCCCC----
Q 003970 135 DDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEE----YGPLNAS---- 206 (782)
Q Consensus 135 ~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~----~~~~~~~---- 206 (782)
|+|+|||||||||++||+|++.....+-....+|....+.+|. +++.|+ .|...+... ..+.+..
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~------dd~~g~-~f~~~~~~~~~~~~~~~~~~~~~~ 73 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYI------DDVNGW-NFLGQYDPRRIVGDDPYDLTEKGY 73 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCcc------ccccCe-eccCCcccccccccCccccccccc
Confidence 6899999999999999999865311111111122222222222 112222 222211000 0000000
Q ss_pred CCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcC
Q 003970 207 TNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDG 286 (782)
Q Consensus 207 ~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g 286 (782)
-..+...+.+..+|||||||||+|...++. .+.||||+|+|+.+|++... .....++++||+||++.|
T Consensus 74 g~~~~~~~~~~~gHGT~VAGiIaa~~~n~~--------g~~GvAp~a~i~~~k~~~~g----~~~~~~i~~Ai~~a~~~g 141 (291)
T cd07483 74 GNNDVNGPISDADHGTHVAGIIAAVRDNGI--------GIDGVADNVKIMPLRIVPNG----DERDKDIANAIRYAVDNG 141 (291)
T ss_pred cccccCCCCCCCCcHHHHHHHHhCcCCCCC--------ceEEECCCCEEEEEEEecCC----CcCHHHHHHHHHHHHHCC
Confidence 011223455789999999999999864422 25899999999999998643 367789999999999999
Q ss_pred CcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCCc-----------ccCCCceEEecccccCccc
Q 003970 287 VDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLV-----------QNVAPWSICVAASSIDRTF 355 (782)
Q Consensus 287 vdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~-----------~~~ap~vitVgAs~~d~~~ 355 (782)
++|||||||... ......+..++..|.++|+++|+||||+|...... +...+++|+|||+....
T Consensus 142 ~~IiN~S~G~~~---~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~-- 216 (291)
T cd07483 142 AKVINMSFGKSF---SPNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKY-- 216 (291)
T ss_pred CcEEEeCCCCCC---CCccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccC--
Confidence 999999999763 22334566777888999999999999998542111 11235677777743210
Q ss_pred ceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEE
Q 003970 356 PTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLI 435 (782)
Q Consensus 356 ~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i 435 (782)
T Consensus 217 -------------------------------------------------------------------------------- 216 (291)
T cd07483 217 -------------------------------------------------------------------------------- 216 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceee
Q 003970 436 FAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITA 515 (782)
Q Consensus 436 ~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~A 515 (782)
....++.||++|+. +|||+|
T Consensus 217 -----------------------------------------------------~~~~~~~~Sn~G~~-------~vdi~A 236 (291)
T cd07483 217 -----------------------------------------------------ENNLVANFSNYGKK-------NVDVFA 236 (291)
T ss_pred -----------------------------------------------------CcccccccCCCCCC-------ceEEEe
Confidence 01246889999985 379999
Q ss_pred cCceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 003970 516 PGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAY 583 (782)
Q Consensus 516 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~ 583 (782)
||.+|+++.+.+ .|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 237 PG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 237 PGERIYSTTPDN-------------EYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred CCCCeEeccCcC-------------CeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 999999998765 7999999999999999999999999999999999999999984
No 12
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.4e-44 Score=373.27 Aligned_cols=238 Identities=27% Similarity=0.354 Sum_probs=191.8
Q ss_pred cEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCCCCCCCCCC
Q 003970 137 IVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRSARD 216 (782)
Q Consensus 137 V~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~~~D 216 (782)
|+|||||||||.+||+|++.. +..+++. .....|
T Consensus 1 V~VavIDsGvd~~hp~l~~~~-----------------------------~~~~~~~-----------------~~~~~~ 34 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVV-----------------------------IARLFFA-----------------GPGAPA 34 (239)
T ss_pred CEEEEEeCCCCCCCcccccCc-----------------------------cccccCC-----------------CCCCCC
Confidence 789999999999999996432 0000000 013456
Q ss_pred CCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcCCcEEEecccC
Q 003970 217 FLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVISASFGE 296 (782)
Q Consensus 217 ~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG~ 296 (782)
..+|||||||||+|+... ..||||+|+|+.+|++...+....++..++++||+||++.|++|||||||.
T Consensus 35 ~~~HGT~vAgiia~~~~~-----------~~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~ 103 (239)
T cd05561 35 PSAHGTAVASLLAGAGAQ-----------RPGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAG 103 (239)
T ss_pred CCCCHHHHHHHHhCCCCC-----------CcccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCC
Confidence 789999999999998532 169999999999999986532224778899999999999999999999997
Q ss_pred CCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCC-CCcccCCCceEEecccccCcccceeEEeCCccEEEeeeeecc
Q 003970 297 SPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEP-SLVQNVAPWSICVAASSIDRTFPTEIVVNSDFSIVGESFIST 375 (782)
Q Consensus 297 ~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVgAs~~d~~~~~~~~~~~~~~~~g~~~~~~ 375 (782)
.. ...+..++.++.++|+++|+||||+|+.. ..++...+++|+|++++.
T Consensus 104 ~~------~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~------------------------ 153 (239)
T cd05561 104 PP------NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDA------------------------ 153 (239)
T ss_pred CC------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecC------------------------
Confidence 52 34567778889999999999999999753 344555789999998431
Q ss_pred cceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCccccccccccEEEE
Q 003970 376 EVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEVDIIPTVRI 455 (782)
Q Consensus 376 ~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i 455 (782)
T Consensus 154 -------------------------------------------------------------------------------- 153 (239)
T cd05561 154 -------------------------------------------------------------------------------- 153 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEEeecCCCCCCCCCCC
Q 003970 456 DIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPS 535 (782)
Q Consensus 456 ~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~ 535 (782)
.+.++.||++|+. +||.|||++|+++.+.+
T Consensus 154 ----------------------------------~~~~~~~s~~g~~--------~di~ApG~~i~~~~~~~-------- 183 (239)
T cd05561 154 ----------------------------------RGRLYREANRGAH--------VDFAAPGVDVWVAAPGG-------- 183 (239)
T ss_pred ----------------------------------CCCccccCCCCCc--------ceEEccccceecccCCC--------
Confidence 2346789999987 49999999999987664
Q ss_pred CCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCcCCCCCcccc
Q 003970 536 DGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAG 609 (782)
Q Consensus 536 ~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G 609 (782)
.|..++|||||||||||++|||+|++| ++++|||++|++||+++... ..+..||||
T Consensus 184 -----~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~~------------~~d~~~G~G 239 (239)
T cd05561 184 -----GYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGPP------------GRDPVFGYG 239 (239)
T ss_pred -----CEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCCC------------CcCCCcCCC
Confidence 799999999999999999999999999 99999999999999976543 355689988
No 13
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.3e-43 Score=373.81 Aligned_cols=247 Identities=30% Similarity=0.363 Sum_probs=194.9
Q ss_pred CcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCCCCCCC-C
Q 003970 136 DIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRS-A 214 (782)
Q Consensus 136 gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~-~ 214 (782)
||+|||||||||++||+|.... ..++.++.+.+.|.+.. .. .
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~----------------------~~~~~~i~~~~~~~~~~---------------~~~~ 43 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKH----------------------LFKNLRILGEYDFVDNS---------------NNTN 43 (261)
T ss_pred CCEEEEEccCCCccCcchhhhc----------------------cccCCceeeeecCccCC---------------CCCC
Confidence 7999999999999999995322 12335566666665431 12 3
Q ss_pred CCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcCCcEEEecc
Q 003970 215 RDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVISASF 294 (782)
Q Consensus 215 ~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~Sl 294 (782)
.|..+|||||||||+|+.. +.+.||||+|+|+.+|+....... ......++.|++|+.+.+++||||||
T Consensus 44 ~~~~~HGT~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~-~~~~~~~~~ai~~a~~~~v~VIn~S~ 112 (261)
T cd07493 44 YTDDDHGTAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASET-PVEEDNWVAAAEWADSLGVDIISSSL 112 (261)
T ss_pred CCCCCchhhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcc-cccHHHHHHHHHHHHHcCCCEEEeCC
Confidence 5788999999999999752 236899999999999987643321 24566789999999999999999999
Q ss_pred cCCCCCCC----------CccChHHHHHHhhhccCceEEEecCCCCCCC---CCcccCCCceEEecccccCcccceeEEe
Q 003970 295 GESPPLRP----------FFASNADIGSFNAMQHGVTVVFSGGNDGPEP---SLVQNVAPWSICVAASSIDRTFPTEIVV 361 (782)
Q Consensus 295 G~~~~~~~----------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~---~~~~~~ap~vitVgAs~~d~~~~~~~~~ 361 (782)
|....... .....+..++..+.++|+++|+||||+|... ...+...+++|+|||...
T Consensus 113 G~~~~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~---------- 182 (261)
T cd07493 113 GYTTFDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDA---------- 182 (261)
T ss_pred CcCCCCCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEecc----------
Confidence 98742000 0113466777888999999999999999763 334445689999998431
Q ss_pred CCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCC
Q 003970 362 NSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMT 441 (782)
Q Consensus 362 ~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~ 441 (782)
T Consensus 183 -------------------------------------------------------------------------------- 182 (261)
T cd07493 183 -------------------------------------------------------------------------------- 182 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEE
Q 003970 442 ELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVL 521 (782)
Q Consensus 442 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~ 521 (782)
.+.++.||++||+. ++++||||+|||.+|+
T Consensus 183 ------------------------------------------------~~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~ 212 (261)
T cd07493 183 ------------------------------------------------NGNKASFSSIGPTA--DGRLKPDVMALGTGIY 212 (261)
T ss_pred ------------------------------------------------CCCCCccCCcCCCC--CCCcCCceEecCCCeE
Confidence 23568899999985 7899999999999999
Q ss_pred eecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 003970 522 AAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAY 583 (782)
Q Consensus 522 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~ 583 (782)
+..... .|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 213 ~~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 213 VINGDG-------------NITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred EEcCCC-------------cEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 865443 7899999999999999999999999999999999999999985
No 14
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=8.3e-43 Score=370.09 Aligned_cols=264 Identities=29% Similarity=0.359 Sum_probs=201.1
Q ss_pred ccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCC
Q 003970 126 VTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNA 205 (782)
Q Consensus 126 ~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~ 205 (782)
++|..+++|+||+|+|||||||++||+|.+..... .+.. .++. ..+...
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~--------------~~~~--~~~~-----~~~~~~---------- 49 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGD--------------GYDP--AVNG-----YNFVPN---------- 49 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCC--------------Cccc--ccCC-----cccccc----------
Confidence 37999999999999999999999999998652000 0000 0000 000000
Q ss_pred CCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhc
Q 003970 206 STNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHD 285 (782)
Q Consensus 206 ~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~ 285 (782)
.........|..||||||||||+|+..+.....|+. .+.|+||+|+|+.+|++.... .+..+.++++|+||++.
T Consensus 50 -~~~~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~---~~~~~~~~~ai~~a~~~ 123 (273)
T cd07485 50 -VGDIDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRY---YVGDDAVAAAIVYAADN 123 (273)
T ss_pred -cCCcCCCCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCC---CccHHHHHHHHHHHHHc
Confidence 000123455788999999999999865433222222 346799999999999998765 57889999999999999
Q ss_pred CCcEEEecccCCCCCCCCccChHHHHHHhhhcc-------CceEEEecCCCCCCCCCcccCCCceEEecccccCccccee
Q 003970 286 GVDVISASFGESPPLRPFFASNADIGSFNAMQH-------GVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRTFPTE 358 (782)
Q Consensus 286 gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~d~~~~~~ 358 (782)
|++|||||||... ...+...+..++..+.++ |+++|+||||+|......+...+++|+|++++.
T Consensus 124 g~~Vin~S~g~~~--~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~------- 194 (273)
T cd07485 124 GAVILQNSWGGTG--GGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDT------- 194 (273)
T ss_pred CCcEEEecCCCCC--ccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccC-------
Confidence 9999999999874 233445566777777777 999999999999876666666789999998441
Q ss_pred EEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEec
Q 003970 359 IVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAE 438 (782)
Q Consensus 359 ~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n 438 (782)
T Consensus 195 -------------------------------------------------------------------------------- 194 (273)
T cd07485 195 -------------------------------------------------------------------------------- 194 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCc
Q 003970 439 PMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGI 518 (782)
Q Consensus 439 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~ 518 (782)
.+.++.||++|+. +||+|||.
T Consensus 195 ---------------------------------------------------~~~~~~~S~~g~~--------~~i~apG~ 215 (273)
T cd07485 195 ---------------------------------------------------NDNKASFSNYGRW--------VDIAAPGV 215 (273)
T ss_pred ---------------------------------------------------CCCcCccccCCCc--------eEEEeCCC
Confidence 2345789999987 49999999
Q ss_pred -eEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCC-CCHHHHHHHHHhc
Q 003970 519 -GVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPN-WSPAAIRSALMTT 581 (782)
Q Consensus 519 -~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~-lsp~~Ik~~L~~T 581 (782)
.|+++++.... .....|..++|||||||+|||++|||+|++|. ++|+|||++|++|
T Consensus 216 ~~i~~~~~~~~~-------~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 216 GTILSTVPKLDG-------DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred CccccccccccC-------CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 89988775421 11237899999999999999999999999999 9999999999986
No 15
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=1.1e-42 Score=367.24 Aligned_cols=247 Identities=33% Similarity=0.373 Sum_probs=193.6
Q ss_pred CCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCCCCCCC
Q 003970 134 GDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRS 213 (782)
Q Consensus 134 G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (782)
|+||+|||||+|||++||+|.+.- .+ .+.+..... ..++.. ......
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~~--~~---~~~~~~~~~---------------~~~~d~-------------~~~~~~ 47 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNKY--RG---WGGGSADHD---------------YNWFDP-------------VGNTPL 47 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhcc--cc---cCCCCcccc---------------cccccC-------------CCCCCC
Confidence 899999999999999999997541 00 000000000 000000 011235
Q ss_pred CCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhh---------
Q 003970 214 ARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALH--------- 284 (782)
Q Consensus 214 ~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~--------- 284 (782)
+.|..+|||||||||+|.... +...||||+|+|+.+|++.... +...+++++++++++
T Consensus 48 ~~d~~~HGT~vagii~g~~~~---------~~~~GvAp~a~i~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~ 114 (264)
T cd07481 48 PYDDNGHGTHTMGTMVGNDGD---------GQQIGVAPGARWIACRALDRNG----GNDADYLRCAQWMLAPTDSAGNPA 114 (264)
T ss_pred CCCCCCchhhhhhheeecCCC---------CCceEECCCCeEEEEEeecCCC----CcHHHHHHHHHHHHhccccccccc
Confidence 668899999999999987532 2238999999999999998764 778899999999975
Q ss_pred ---cCCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCC---cccCCCceEEecccccCccccee
Q 003970 285 ---DGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSL---VQNVAPWSICVAASSIDRTFPTE 358 (782)
Q Consensus 285 ---~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~---~~~~ap~vitVgAs~~d~~~~~~ 358 (782)
.+++|||||||... . ....+..++..+.++|++||+||||+|..... .+...+++|+|||.+.
T Consensus 115 ~~~~~~~Iin~S~G~~~--~--~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~------- 183 (264)
T cd07481 115 DPDLAPDVINNSWGGPS--G--DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDR------- 183 (264)
T ss_pred ccccCCeEEEeCCCcCC--C--CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCC-------
Confidence 78999999999874 1 23455666777889999999999999865433 3445689999998431
Q ss_pred EEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEec
Q 003970 359 IVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAE 438 (782)
Q Consensus 359 ~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n 438 (782)
T Consensus 184 -------------------------------------------------------------------------------- 183 (264)
T cd07481 184 -------------------------------------------------------------------------------- 183 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCc
Q 003970 439 PMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGI 518 (782)
Q Consensus 439 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~ 518 (782)
.+.++.||++||.. .+++||||+|||.
T Consensus 184 ---------------------------------------------------~~~~~~~S~~g~~~--~~~~~~dv~ApG~ 210 (264)
T cd07481 184 ---------------------------------------------------NDVLADFSSRGPST--YGRIKPDISAPGV 210 (264)
T ss_pred ---------------------------------------------------CCCCccccCCCCCC--CCCcCceEEECCC
Confidence 33568999999995 5899999999999
Q ss_pred eEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCC--CCHHHHHHHHHhccc
Q 003970 519 GVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPN--WSPAAIRSALMTTAY 583 (782)
Q Consensus 519 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~--lsp~~Ik~~L~~TA~ 583 (782)
+|+++.+.+ .|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 211 ~i~s~~~~~-------------~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 211 NIRSAVPGG-------------GYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred CeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 999999875 7899999999999999999999999999 999999999999985
No 16
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=3e-42 Score=375.46 Aligned_cols=223 Identities=29% Similarity=0.290 Sum_probs=166.8
Q ss_pred CCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcCCcEEEecc
Q 003970 215 RDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVISASF 294 (782)
Q Consensus 215 ~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~Sl 294 (782)
.|+.+|||||||||||+..+ ...+.||||+|+|+.+|+++.... ..+...++++||++|++.|++||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~--------~~~~~GVAP~A~I~svkv~d~~~g-s~~t~~~l~~ai~~ai~~gadVIN~Sl 252 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPE--------EPERNGVAPGAQIVSIKIGDTRLG-SMETGTALVRAMIAAIETKCDLINMSY 252 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCC--------CCceEEecCCCeEEEEEeccCCCC-CccchHHHHHHHHHHHHcCCCEEEecC
Confidence 46789999999999998532 234689999999999999865431 123456799999999999999999999
Q ss_pred cCCCCCCCCccChHHHHHHh-hhccCceEEEecCCCCCCCCCcccC---CCceEEecccccCcccceeEEeCCccEEEee
Q 003970 295 GESPPLRPFFASNADIGSFN-AMQHGVTVVFSGGNDGPEPSLVQNV---APWSICVAASSIDRTFPTEIVVNSDFSIVGE 370 (782)
Q Consensus 295 G~~~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~~~~~~---ap~vitVgAs~~d~~~~~~~~~~~~~~~~g~ 370 (782)
|... .......+..++.+ +.++|+++|+||||+|+...++..+ .+.+|+|||+.........
T Consensus 253 G~~~--~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~------------ 318 (412)
T cd04857 253 GEAT--HWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE------------ 318 (412)
T ss_pred CcCC--CCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc------------
Confidence 9874 11111223333433 4578999999999999887776544 5799999995421100000
Q ss_pred eeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCccccccccc
Q 003970 371 SFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEVDII 450 (782)
Q Consensus 371 ~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~ 450 (782)
T Consensus 319 -------------------------------------------------------------------------------- 318 (412)
T cd04857 319 -------------------------------------------------------------------------------- 318 (412)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEEeecCCCCCC
Q 003970 451 PTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPP 530 (782)
Q Consensus 451 p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~ 530 (782)
|.. .....+.++.||||||+. ++.+||||+|||+.|.+.-...
T Consensus 319 ---------------y~~-----------------~~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~p~~~--- 361 (412)
T cd04857 319 ---------------YSL-----------------REKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIASVPNWT--- 361 (412)
T ss_pred ---------------ccc-----------------ccccCCccccccccCCcc--cCCcCceEEeCCCcEEEcccCC---
Confidence 000 011145689999999995 7999999999999998752211
Q ss_pred CCCCCCCCccceeeeccccchhhHHHHHHHHHHH----hCCCCCHHHHHHHHHhccccC
Q 003970 531 TLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKS----AHPNWSPAAIRSALMTTAYTR 585 (782)
Q Consensus 531 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~lsp~~Ik~~L~~TA~~~ 585 (782)
...|..|+|||||||||||++|||++ .+|+|+|.+||.+|++||+++
T Consensus 362 --------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 362 --------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred --------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 12789999999999999999999985 478999999999999999853
No 17
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.5e-42 Score=361.37 Aligned_cols=258 Identities=31% Similarity=0.463 Sum_probs=203.4
Q ss_pred CCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCCCCCCC
Q 003970 134 GDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRS 213 (782)
Q Consensus 134 G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (782)
|+||+|+|||+|||++||+|.+.. . ..|. +... ......
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~-~----~~~~------------------------~~~~------------~~~~~~ 39 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRI-I----RFAD------------------------FVNT------------VNGRTT 39 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccc-c----cccc------------------------cccc------------ccCCCC
Confidence 899999999999999999997543 0 0000 0000 001235
Q ss_pred CCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhc----CCcE
Q 003970 214 ARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHD----GVDV 289 (782)
Q Consensus 214 ~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~----gvdV 289 (782)
..|..+|||||||+|+|...+. ...+.||||+|+|+.+|+++..+ ....+++++||+|+++. +++|
T Consensus 40 ~~d~~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~---~~~~~~~~~ai~~~~~~~~~~~~~I 109 (264)
T cd07487 40 PYDDNGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSG---SGSESDIIAGIDWVVENNEKYNIRV 109 (264)
T ss_pred CCCCCCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCC---CccHHHHHHHHHHHHhhccccCceE
Confidence 5677899999999999986432 23468999999999999998776 47788999999999998 9999
Q ss_pred EEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCC--cccCCCceEEecccccCcccceeEEeCCccEE
Q 003970 290 ISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSL--VQNVAPWSICVAASSIDRTFPTEIVVNSDFSI 367 (782)
Q Consensus 290 In~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--~~~~ap~vitVgAs~~d~~~~~~~~~~~~~~~ 367 (782)
||+|||.... .....+.+..++.++.++|+++|+||||+|....+ .+...+++|+|||...+..
T Consensus 110 in~S~g~~~~-~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~------------- 175 (264)
T cd07487 110 VNLSLGAPPD-PSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP------------- 175 (264)
T ss_pred EEeccCCCCC-CCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC-------------
Confidence 9999998852 24466778888899999999999999999977653 3444689999998543210
Q ss_pred EeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCcccccc
Q 003970 368 VGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEV 447 (782)
Q Consensus 368 ~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~ 447 (782)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEEeecCCC
Q 003970 448 DIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPN 527 (782)
Q Consensus 448 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~ 527 (782)
....++.||++||+. ++++||||+|||++|+++.+..
T Consensus 176 -----------------------------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~ 212 (264)
T cd07487 176 -----------------------------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPG 212 (264)
T ss_pred -----------------------------------------CCccccccccCCCCC--CCCcCCCEEccccceEeccccc
Confidence 012468899999995 7999999999999999986653
Q ss_pred CCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 003970 528 TPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAY 583 (782)
Q Consensus 528 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~ 583 (782)
... .......|..++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 213 ~~~----~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 213 GNP----GAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred ccc----CCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 111 1122347899999999999999999999999999999999999999985
No 18
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.6e-41 Score=362.44 Aligned_cols=255 Identities=25% Similarity=0.287 Sum_probs=183.4
Q ss_pred CCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCC
Q 003970 123 TGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGP 202 (782)
Q Consensus 123 ~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~ 202 (782)
++..+|+++++|+||+|+||||||+..|| |...+ +.+.. .+..+
T Consensus 9 ~~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~--------~~~~~--------------------~~~~~------- 52 (298)
T cd07494 9 NATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRG--------YQVRV--------------------VLAPG------- 52 (298)
T ss_pred ChhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCC--------cccee--------------------ecCCC-------
Confidence 67789999999999999999999999998 75332 11100 00000
Q ss_pred CCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHH
Q 003970 203 LNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDA 282 (782)
Q Consensus 203 ~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a 282 (782)
......|+.|||||||+++ .||||+|+|+.+|++. ...+++++||+||
T Consensus 53 -------~~~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~-------~~~~~~~~ai~~a 100 (298)
T cd07494 53 -------ATDPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGG-------PDLVNSVGAFKKA 100 (298)
T ss_pred -------CCCCCCCCCCcchheeece------------------eEeCCCCeEEEEEccC-------CCcHHHHHHHHHH
Confidence 1124567889999998764 5899999999999976 3456799999999
Q ss_pred hhcCCcEEEecccCCCCCC--C------CccChHHHHHHhhhccCceEEEecCCCCCCCCCcccCCCceEEecccccCcc
Q 003970 283 LHDGVDVISASFGESPPLR--P------FFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRT 354 (782)
Q Consensus 283 ~~~gvdVIn~SlG~~~~~~--~------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~d~~ 354 (782)
++++++|||||||...... . .....+..++.+|.++|++||+||||++. .++...|++|+|||++.+..
T Consensus 101 ~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~ 177 (298)
T cd07494 101 ISLSPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED 177 (298)
T ss_pred HhcCCCEEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC
Confidence 9999999999999863100 0 11234677788889999999999999974 45667899999999653321
Q ss_pred cceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEE
Q 003970 355 FPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGL 434 (782)
Q Consensus 355 ~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~ 434 (782)
- .
T Consensus 178 g--------------------------------------------------~---------------------------- 179 (298)
T cd07494 178 G--------------------------------------------------A---------------------------- 179 (298)
T ss_pred C--------------------------------------------------c----------------------------
Confidence 0 0
Q ss_pred EEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccce-
Q 003970 435 IFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDI- 513 (782)
Q Consensus 435 i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI- 513 (782)
.......+.|++ .. .+++.|||+
T Consensus 180 ----------------------------------------------------~~~~~~~~~~~s---~~-~~g~~~pd~~ 203 (298)
T cd07494 180 ----------------------------------------------------RRASSYASGFRS---KI-YPGRQVPDVC 203 (298)
T ss_pred ----------------------------------------------------ccccccccCccc---cc-CCCCccCccc
Confidence 000000111222 11 356677877
Q ss_pred ---------------eecCceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHH
Q 003970 514 ---------------TAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSAL 578 (782)
Q Consensus 514 ---------------~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L 578 (782)
+|||..|.++...... .......|..++|||||||||||++|||+|++|.|++++||.+|
T Consensus 204 ~~~g~~~~~~~~~~~~APG~~i~~~~~~~~~-----~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l 278 (298)
T cd07494 204 GLVGMLPHAAYLMLPVPPGSQLDRSCAAFPD-----GTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLL 278 (298)
T ss_pred cccCcCCcccccccccCCCcceeccccCCCC-----CCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 4799998765532100 01122379999999999999999999999999999999999999
Q ss_pred HhccccCCC
Q 003970 579 MTTAYTRDT 587 (782)
Q Consensus 579 ~~TA~~~~~ 587 (782)
++||+++..
T Consensus 279 ~~ta~~~~~ 287 (298)
T cd07494 279 NKTARDVTK 287 (298)
T ss_pred HHhCcccCC
Confidence 999997653
No 19
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=3.3e-41 Score=355.64 Aligned_cols=243 Identities=31% Similarity=0.369 Sum_probs=201.7
Q ss_pred CCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCC
Q 003970 123 TGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGP 202 (782)
Q Consensus 123 ~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~ 202 (782)
+++.+|..+ +|+||+|+|||+||+++||+|.+.. +...+.+.+
T Consensus 17 ~~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~~----------------------------~~~~~~~~~-------- 59 (260)
T cd07484 17 GAPKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKVK----------------------------FVLGYDFVD-------- 59 (260)
T ss_pred ChHHHHhhc-CCCCCEEEEEeCCCCCCCcccccCC----------------------------cccceeccC--------
Confidence 677899988 9999999999999999999984221 111111211
Q ss_pred CCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHH
Q 003970 203 LNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDA 282 (782)
Q Consensus 203 ~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a 282 (782)
....+.|..+|||||||||++...++ ..+.|+||+|+|+.+|+++..+ .+...+++++|+++
T Consensus 60 -------~~~~~~d~~~HGT~vagii~~~~~~~--------~~~~Giap~a~l~~~~v~~~~~---~~~~~~~~~ai~~a 121 (260)
T cd07484 60 -------NDSDAMDDNGHGTHVAGIIAAATNNG--------TGVAGVAPKAKIMPVKVLDANG---SGSLADIANGIRYA 121 (260)
T ss_pred -------CCCCCCCCCCcHHHHHHHHhCccCCC--------CceEeECCCCEEEEEEEECCCC---CcCHHHHHHHHHHH
Confidence 11235678899999999999875332 2358999999999999998765 57889999999999
Q ss_pred hhcCCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCCcccCCCceEEecccccCcccceeEEeC
Q 003970 283 LHDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRTFPTEIVVN 362 (782)
Q Consensus 283 ~~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~d~~~~~~~~~~ 362 (782)
++.+++|||+|||... ....+..++..+.++|++||+||||+|......+...+++|+||+.+.
T Consensus 122 ~~~~~~iin~S~g~~~-----~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~----------- 185 (260)
T cd07484 122 ADKGAKVINLSLGGGL-----GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQ----------- 185 (260)
T ss_pred HHCCCeEEEecCCCCC-----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCC-----------
Confidence 9999999999999873 345677777888899999999999999877777777899999998442
Q ss_pred CccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCc
Q 003970 363 SDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTE 442 (782)
Q Consensus 363 ~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~ 442 (782)
T Consensus 186 -------------------------------------------------------------------------------- 185 (260)
T cd07484 186 -------------------------------------------------------------------------------- 185 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEEe
Q 003970 443 LIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLA 522 (782)
Q Consensus 443 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~s 522 (782)
.+..+.||++|+. +|++|||.+|++
T Consensus 186 -----------------------------------------------~~~~~~~s~~g~~--------~~~~apG~~i~~ 210 (260)
T cd07484 186 -----------------------------------------------DDKRASFSNYGKW--------VDVSAPGGGILS 210 (260)
T ss_pred -----------------------------------------------CCCcCCcCCCCCC--------ceEEeCCCCcEe
Confidence 2345789999987 499999999999
Q ss_pred ecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccC
Q 003970 523 AWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTR 585 (782)
Q Consensus 523 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~~~ 585 (782)
..+.. .|..++|||||||+|||++||++|++| |++.+||++|++||+++
T Consensus 211 ~~~~~-------------~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 211 TTPDG-------------DYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred ecCCC-------------CEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 88764 899999999999999999999999999 99999999999999864
No 20
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.8e-41 Score=363.29 Aligned_cols=236 Identities=24% Similarity=0.191 Sum_probs=168.2
Q ss_pred CCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCC-CCCCCHHHHHHHHHHHhhcC---CcE
Q 003970 214 ARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDS-DGKCTEADILAAFDDALHDG---VDV 289 (782)
Q Consensus 214 ~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~-~~~~~~~~i~~ai~~a~~~g---vdV 289 (782)
..|..||||||||||++.... .....|+||+|+|+.+|++...+. .......++++||+|+++.+ ++|
T Consensus 34 ~~d~~gHGT~vAgiia~~~~~--------~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~V 105 (291)
T cd04847 34 TADDLGHGTAVAGLALYGDLT--------LPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRV 105 (291)
T ss_pred cCCCCCChHHHHHHHHcCccc--------CCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeE
Confidence 568999999999999976432 123579999999999999987641 11367788999999999853 489
Q ss_pred EEecccCCCCCCCCccChHHHHHH-hhhccCceEEEecCCCCCCCCCc------------ccCCCceEEecccccCcccc
Q 003970 290 ISASFGESPPLRPFFASNADIGSF-NAMQHGVTVVFSGGNDGPEPSLV------------QNVAPWSICVAASSIDRTFP 356 (782)
Q Consensus 290 In~SlG~~~~~~~~~~~~~~~a~~-~a~~~Gi~vV~AAGN~G~~~~~~------------~~~ap~vitVgAs~~d~~~~ 356 (782)
||||||............+..++. .+.++|++||+||||+|...... +..++++|+|||++.+....
T Consensus 106 iN~SlG~~~~~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~ 185 (291)
T cd04847 106 FNLSLGSPLPIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDIT 185 (291)
T ss_pred EEEecCCCCCccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCC
Confidence 999999974201111123444443 35699999999999999765432 23367999999976432110
Q ss_pred eeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEE
Q 003970 357 TEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIF 436 (782)
Q Consensus 357 ~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~ 436 (782)
..
T Consensus 186 ~~------------------------------------------------------------------------------ 187 (291)
T cd04847 186 DR------------------------------------------------------------------------------ 187 (291)
T ss_pred Cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred ecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeec
Q 003970 437 AEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAP 516 (782)
Q Consensus 437 ~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~AP 516 (782)
+.. +.......+.||+|||.. ++.+||||+||
T Consensus 188 ---------------------------------s~~-------------~~~~~~~~~~fs~~Gp~~--~~~~KPDl~ap 219 (291)
T cd04847 188 ---------------------------------ARY-------------SAVGPAPAGATTSSGPGS--PGPIKPDVVAF 219 (291)
T ss_pred ---------------------------------ccc-------------cccccccCCCccccCCCC--CCCcCCcEEee
Confidence 000 000011223499999995 79999999999
Q ss_pred CceEEeecCCCCCCC-----CCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 003970 517 GIGVLAAWPPNTPPT-----LLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAY 583 (782)
Q Consensus 517 G~~I~sa~~~~~~~~-----~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~ 583 (782)
|++|.+..+...... ..........|..++|||||||||||++|||+|++|+++|++||++|++||+
T Consensus 220 G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 220 GGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred CCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 999988654321100 0001122348999999999999999999999999999999999999999985
No 21
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=4.5e-41 Score=353.47 Aligned_cols=233 Identities=30% Similarity=0.413 Sum_probs=192.3
Q ss_pred cCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCC
Q 003970 127 TPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNAS 206 (782)
Q Consensus 127 ~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 206 (782)
.|..+++|+||+|+|||+||+++||+|.+.. ...+.+..
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~~-----------------------------~~~~~~~~------------ 55 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGRA-----------------------------IWGADFVG------------ 55 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCCe-----------------------------eeeeecCC------------
Confidence 6777899999999999999999999997432 11111111
Q ss_pred CCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcC
Q 003970 207 TNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDG 286 (782)
Q Consensus 207 ~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~g 286 (782)
.....|..+|||||||||+++. .||||+|+|+.+|+++..+ ....+.++++++++++..
T Consensus 56 ----~~~~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~---~~~~~~~~~ai~~~~~~~ 114 (255)
T cd04077 56 ----GDPDSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNG---SGTLSGIIAGLEWVANDA 114 (255)
T ss_pred ----CCCCCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCC---CcCHHHHHHHHHHHHhcc
Confidence 0125678899999999999863 6999999999999998775 477899999999999874
Q ss_pred -----CcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCC-CCcccCCCceEEecccccCcccceeEE
Q 003970 287 -----VDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEP-SLVQNVAPWSICVAASSIDRTFPTEIV 360 (782)
Q Consensus 287 -----vdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVgAs~~d~~~~~~~~ 360 (782)
++|||+|||... ...+..++.++.++|+++|+||||+|... ...+...+++|+||+.+.
T Consensus 115 ~~~~~~~iin~S~g~~~------~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~--------- 179 (255)
T cd04077 115 TKRGKPAVANMSLGGGA------STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDS--------- 179 (255)
T ss_pred cccCCCeEEEeCCCCCC------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCC---------
Confidence 899999999872 45667777889999999999999999765 334445789999998542
Q ss_pred eCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCC
Q 003970 361 VNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPM 440 (782)
Q Consensus 361 ~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~ 440 (782)
T Consensus 180 -------------------------------------------------------------------------------- 179 (255)
T cd04077 180 -------------------------------------------------------------------------------- 179 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceE
Q 003970 441 TELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGV 520 (782)
Q Consensus 441 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I 520 (782)
.+..+.||++||.. ||+|||.+|
T Consensus 180 -------------------------------------------------~~~~~~~S~~g~~~--------~i~apG~~i 202 (255)
T cd04077 180 -------------------------------------------------DDARASFSNYGSCV--------DIFAPGVDI 202 (255)
T ss_pred -------------------------------------------------CCCccCcccCCCCC--------cEEeCCCCe
Confidence 22368899999974 999999999
Q ss_pred EeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccc
Q 003970 521 LAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYT 584 (782)
Q Consensus 521 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~~ 584 (782)
.++..... ..|..++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 203 ~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 203 LSAWIGSD-----------TATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred EecccCCC-----------CcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 99887421 278999999999999999999999999999999999999999974
No 22
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.2e-41 Score=351.02 Aligned_cols=253 Identities=29% Similarity=0.340 Sum_probs=186.0
Q ss_pred CcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCCCCCCCCC
Q 003970 136 DIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRSAR 215 (782)
Q Consensus 136 gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (782)
||+|||||+|||++||+|.+.. ...+.|.... ........
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~-----------------------------~~~~~~~~~~-----------~~~~~~~~ 40 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRV-----------------------------AQWADFDENR-----------RISATEVF 40 (254)
T ss_pred CCEEEEEeCCCCCCCcchhccc-----------------------------CCceeccCCC-----------CCCCCCCC
Confidence 7999999999999999997542 1111111100 00123455
Q ss_pred CCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcCCcEEEeccc
Q 003970 216 DFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVISASFG 295 (782)
Q Consensus 216 D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG 295 (782)
|..+|||||||||+|+.. ++...||||+|+|+.+|++...+ +..++++++|+|+++.+++|||||||
T Consensus 41 d~~~HGT~vAgiia~~~~---------~~~~~GvAp~a~i~~~~v~~~~~----~~~~~~~~ai~~a~~~~~~Vin~S~g 107 (254)
T cd07490 41 DAGGHGTHVSGTIGGGGA---------KGVYIGVAPEADLLHGKVLDDGG----GSLSQIIAGMEWAVEKDADVVSMSLG 107 (254)
T ss_pred CCCCcHHHHHHHHhcCCC---------CCCEEEECCCCEEEEEEEecCCC----CcHHHHHHHHHHHHhCCCCEEEECCC
Confidence 788999999999999864 22357999999999999998764 78899999999999999999999999
Q ss_pred CCCCCCCCccChHHHHHHhhhc-cCceEEEecCCCCCCCCCcccCCCceEEecccccCcccceeEEeCCccEEEeeeeec
Q 003970 296 ESPPLRPFFASNADIGSFNAMQ-HGVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRTFPTEIVVNSDFSIVGESFIS 374 (782)
Q Consensus 296 ~~~~~~~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~d~~~~~~~~~~~~~~~~g~~~~~ 374 (782)
... .. .+.+..++....+ +|++||+||||+|......+...+++|+|||++.+.......
T Consensus 108 ~~~--~~--~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s--------------- 168 (254)
T cd07490 108 GTY--YS--EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFS--------------- 168 (254)
T ss_pred cCC--CC--CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCcc---------------
Confidence 874 11 4555555544443 699999999999987555566679999999965332100000
Q ss_pred ccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCccccccccccEEE
Q 003970 375 TEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEVDIIPTVR 454 (782)
Q Consensus 375 ~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~ 454 (782)
T Consensus 169 -------------------------------------------------------------------------------- 168 (254)
T cd07490 169 -------------------------------------------------------------------------------- 168 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEEeecCCCCCCCCCC
Q 003970 455 IDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLP 534 (782)
Q Consensus 455 i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~ 534 (782)
..........+.+|.. .....|||++|||.+|+++....
T Consensus 169 ---------------------------------~~g~~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~~~~------- 207 (254)
T cd07490 169 ---------------------------------SFGSSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQGA------- 207 (254)
T ss_pred ---------------------------------CCcccccccccCCCCC-ccCCcCceEEeccCCeEccccCC-------
Confidence 0000122233344443 34678999999999999865321
Q ss_pred CCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 003970 535 SDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAY 583 (782)
Q Consensus 535 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~ 583 (782)
.....|..++|||||||+|||++|||+|++|+|++.+||++|++||+
T Consensus 208 --~~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 208 --NGDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred --CCCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 11237999999999999999999999999999999999999999984
No 23
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-40 Score=355.31 Aligned_cols=207 Identities=29% Similarity=0.333 Sum_probs=166.9
Q ss_pred CCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHh---------
Q 003970 213 SARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDAL--------- 283 (782)
Q Consensus 213 ~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~--------- 283 (782)
...+..+|||||||||+|...++ ..+.||||+|+|+.+|+++..+ .+.+++++|++|++
T Consensus 66 ~~~~~~~HGT~vAgiiaa~~~~~--------~~~~GvAp~a~i~~~~v~~~~~----~~~~~i~~a~~~a~~~~~~~~~~ 133 (285)
T cd07496 66 GVSPSSWHGTHVAGTIAAVTNNG--------VGVAGVAWGARILPVRVLGKCG----GTLSDIVDGMRWAAGLPVPGVPV 133 (285)
T ss_pred CCCCCCCCHHHHHHHHhCcCCCC--------CCceeecCCCeEEEEEEecCCC----CcHHHHHHHHHHHhccCcCCCcc
Confidence 45578899999999999986432 2358999999999999998775 58889999999998
Q ss_pred -hcCCcEEEecccCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCC-CCcccCCCceEEecccccCcccceeEEe
Q 003970 284 -HDGVDVISASFGESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEP-SLVQNVAPWSICVAASSIDRTFPTEIVV 361 (782)
Q Consensus 284 -~~gvdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVgAs~~d~~~~~~~~~ 361 (782)
.++++|||||||... . ....+..++..+.++|++||+||||+|... ...+...+++|+|||++.
T Consensus 134 ~~~~~~Iin~S~G~~~---~-~~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~---------- 199 (285)
T cd07496 134 NPNPAKVINLSLGGDG---A-CSATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDL---------- 199 (285)
T ss_pred cCCCCeEEEeCCCCCC---C-CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCC----------
Confidence 457899999999874 1 145677788889999999999999999765 445556789999998542
Q ss_pred CCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCC
Q 003970 362 NSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMT 441 (782)
Q Consensus 362 ~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~ 441 (782)
T Consensus 200 -------------------------------------------------------------------------------- 199 (285)
T cd07496 200 -------------------------------------------------------------------------------- 199 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEE
Q 003970 442 ELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVL 521 (782)
Q Consensus 442 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~ 521 (782)
.+.++.||++|+.. ||+|||++|.
T Consensus 200 ------------------------------------------------~~~~~~~S~~g~~v--------di~apG~~i~ 223 (285)
T cd07496 200 ------------------------------------------------RGQRASYSNYGPAV--------DVSAPGGDCA 223 (285)
T ss_pred ------------------------------------------------CCCcccccCCCCCC--------CEEeCCCCcc
Confidence 23568899999974 9999999999
Q ss_pred eecCCCCCCC--CCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 003970 522 AAWPPNTPPT--LLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTT 581 (782)
Q Consensus 522 sa~~~~~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~T 581 (782)
++........ ..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 224 SDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred ccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 8876542210 00112223478999999999999999999999999999999999999986
No 24
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-41 Score=353.89 Aligned_cols=331 Identities=22% Similarity=0.341 Sum_probs=249.0
Q ss_pred CCCceEEEEeCCCCCCCCchhhHHHHHHHHHHhCCch------hhcc------------ceEEEee---eeeeeEEEEeC
Q 003970 25 TASHVYIVYLGHNRHCDPNLISKSHLQLLSSVFASEE------DAKR------------SLLYGYK---YSFSGFSAKLN 83 (782)
Q Consensus 25 ~~~~~yIV~l~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~------------~i~~~y~---~~~ng~s~~l~ 83 (782)
.....|||.|++.. .+.-...|.++++....... ++-. .+.+.|. ..|+|+.-..+
T Consensus 78 ~~~~~YiV~f~~~~---~q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft 154 (501)
T KOG1153|consen 78 ALPSRYIVVFKPDA---SQQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFT 154 (501)
T ss_pred ccccceEEEeCCCc---cHHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhccccccc
Confidence 45678999999542 24445566667666543221 1100 0222332 26788888889
Q ss_pred HHHHHHHhcCcCeEEEEecceeeccc--------ccccccccccccC------CCCccCCCCCCCCCcEEEEeccccCCC
Q 003970 84 SSQAASLAEMEEVISIFESQVLKLHT--------TRSWDFMGLILDN------TGEVTPVQLAYGDDIVVGIFDTGVWPE 149 (782)
Q Consensus 84 ~~~~~~L~~~p~V~~V~~~~~~~~~~--------~~s~~~~gl~~~~------~~~~~~~~~~~G~gV~VgVIDtGId~~ 149 (782)
.+-+..++++|-++.++++...+... ...|....+...- .....++ -..|+||...|+||||+.+
T Consensus 155 ~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~-~~aG~gvtaYv~DTGVni~ 233 (501)
T KOG1153|consen 155 GESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYE-IDAGKGVTAYVLDTGVNIE 233 (501)
T ss_pred cceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEee-cccCCCeEEEEeccccccc
Confidence 99999999999999999988765432 2333222221110 0111222 3379999999999999999
Q ss_pred CCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCCCCCCCCCCCCCCchhhhhhhc
Q 003970 150 SESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRSARDFLGHGTHTASTAA 229 (782)
Q Consensus 150 Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAgiaa 229 (782)
||+|.+.. .| |.| +. ......|++||||||||+|+
T Consensus 234 H~dFegRa-------~w-Ga~-----i~--------------------------------~~~~~~D~nGHGTH~AG~I~ 268 (501)
T KOG1153|consen 234 HPDFEGRA-------IW-GAT-----IP--------------------------------PKDGDEDCNGHGTHVAGLIG 268 (501)
T ss_pred ccccccce-------ec-ccc-----cC--------------------------------CCCcccccCCCcceeeeeee
Confidence 99997543 12 111 00 01244689999999999999
Q ss_pred cccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhc---------CCcEEEecccCCCCC
Q 003970 230 GSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHD---------GVDVISASFGESPPL 300 (782)
Q Consensus 230 g~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~---------gvdVIn~SlG~~~~~ 300 (782)
++. .|||.+++|+++||+.++| .+..+++++++|++++. +..|.|||+|+..
T Consensus 269 sKt--------------~GvAK~s~lvaVKVl~~dG---sGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~-- 329 (501)
T KOG1153|consen 269 SKT--------------FGVAKNSNLVAVKVLRSDG---SGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFR-- 329 (501)
T ss_pred ccc--------------cccccccceEEEEEeccCC---cEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCcc--
Confidence 985 7999999999999999998 79999999999999986 3569999999983
Q ss_pred CCCccChHHHHHHhhhccCceEEEecCCCCCCCCC-cccCCCceEEecccccCcccceeEEeCCccEEEeeeeeccccee
Q 003970 301 RPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSL-VQNVAPWSICVAASSIDRTFPTEIVVNSDFSIVGESFISTEVKA 379 (782)
Q Consensus 301 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~-~~~~ap~vitVgAs~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~ 379 (782)
.-.+..|+..|.+.||++++||||+..+.+. .+..+..+|||||++.
T Consensus 330 ----S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~---------------------------- 377 (501)
T KOG1153|consen 330 ----SAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTK---------------------------- 377 (501)
T ss_pred ----cHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEeccccc----------------------------
Confidence 4578889999999999999999999876544 4456789999999652
Q ss_pred eEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCccccccccccEEEEehhh
Q 003970 380 KLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEVDIIPTVRIDIAQ 459 (782)
Q Consensus 380 ~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~ 459 (782)
T Consensus 378 -------------------------------------------------------------------------------- 377 (501)
T KOG1153|consen 378 -------------------------------------------------------------------------------- 377 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEEeecCCCCCCCCCCCCCCc
Q 003970 460 GTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRS 539 (782)
Q Consensus 460 g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~ 539 (782)
.+.++.||+||++. ||.|||++|+|+|.+...
T Consensus 378 ------------------------------~D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~~---------- 409 (501)
T KOG1153|consen 378 ------------------------------NDTIAFFSNWGKCV--------DIFAPGVNILSSWIGSNN---------- 409 (501)
T ss_pred ------------------------------ccchhhhcCcccee--------eeecCchhhhhhhhcCcc----------
Confidence 45789999999995 999999999999998643
Q ss_pred cceeeeccccchhhHHHHHHHHHHHhCCC---------CCHHHHHHHHHhcccc
Q 003970 540 VKWNFQSGTSMSCPHVSGVVALIKSAHPN---------WSPAAIRSALMTTAYT 584 (782)
Q Consensus 540 ~~y~~~sGTSmAaP~VAG~aALl~q~~P~---------lsp~~Ik~~L~~TA~~ 584 (782)
...++||||||+|||||++|..++++|. .+|.++|..+..-..+
T Consensus 410 -at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~~ 462 (501)
T KOG1153|consen 410 -ATAILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKTQ 462 (501)
T ss_pred -chheeecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhccccc
Confidence 6678999999999999999999999983 3888998888776654
No 25
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=1.7e-40 Score=356.60 Aligned_cols=279 Identities=28% Similarity=0.318 Sum_probs=201.2
Q ss_pred CCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCCC
Q 003970 130 QLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNR 209 (782)
Q Consensus 130 ~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~ 209 (782)
++++|+||+|||||+|||++||+|.+... .+. ...++++.....+..
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~-------------~~~-----~~~~~~~~~~~~~~~--------------- 48 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF-------------NKT-----NLFHRKIVRYDSLSD--------------- 48 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc-------------CcC-----ccCcccEEEeeccCC---------------
Confidence 58899999999999999999999976531 001 112344443332211
Q ss_pred CCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcCCcE
Q 003970 210 EYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDV 289 (782)
Q Consensus 210 ~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~gvdV 289 (782)
...|..+|||||||||+|+..+... ...+.||||+|+|+.+|++...+. .....++..+++++.+.+++|
T Consensus 49 ---~~~d~~~HGT~vAgiia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~V 118 (293)
T cd04842 49 ---TKDDVDGHGTHVAGIIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSGN--LSSPPDLNKLFSPMYDAGARI 118 (293)
T ss_pred ---CCCCCCCCcchhheeeccCCcCCCc-----ccccccccccCeEEEEEeeccCcc--ccCCccHHHHHHHHHHhCCEE
Confidence 2227899999999999998754321 113589999999999999887642 356677899999999999999
Q ss_pred EEecccCCCCCCCCccChHHHHHHhhh-c-cCceEEEecCCCCCCCC---CcccCCCceEEecccccCcccceeEEeCCc
Q 003970 290 ISASFGESPPLRPFFASNADIGSFNAM-Q-HGVTVVFSGGNDGPEPS---LVQNVAPWSICVAASSIDRTFPTEIVVNSD 364 (782)
Q Consensus 290 In~SlG~~~~~~~~~~~~~~~a~~~a~-~-~Gi~vV~AAGN~G~~~~---~~~~~ap~vitVgAs~~d~~~~~~~~~~~~ 364 (782)
||||||... .. .......++.++. + +|+++|+||||+|.... ..+...+++|+|||++.+.....
T Consensus 119 in~S~G~~~--~~-~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~------- 188 (293)
T cd04842 119 SSNSWGSPV--NN-GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG------- 188 (293)
T ss_pred EeccCCCCC--cc-ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccc-------
Confidence 999999884 21 1233333333332 3 89999999999997654 44455799999999764331000
Q ss_pred cEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCccc
Q 003970 365 FSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELI 444 (782)
Q Consensus 365 ~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~ 444 (782)
..|..
T Consensus 189 --------------------------~~~~~------------------------------------------------- 193 (293)
T cd04842 189 --------------------------EGGLG------------------------------------------------- 193 (293)
T ss_pred --------------------------ccccc-------------------------------------------------
Confidence 00000
Q ss_pred cccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEEeec
Q 003970 445 AEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAW 524 (782)
Q Consensus 445 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~ 524 (782)
.......++.||++||+. ++++||||+|||++|+++.
T Consensus 194 -----------------------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~ 230 (293)
T cd04842 194 -----------------------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSAR 230 (293)
T ss_pred -----------------------------------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeEecc
Confidence 011245689999999985 6899999999999999997
Q ss_pred CCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhC-----C---CCCHHHHHHHHHhccc
Q 003970 525 PPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAH-----P---NWSPAAIRSALMTTAY 583 (782)
Q Consensus 525 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-----P---~lsp~~Ik~~L~~TA~ 583 (782)
+.... ........|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 231 ~~~~~----~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 231 SGGGG----IGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred CCCCC----CCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 65310 011223478999999999999999999999985 4 6677899999999985
No 26
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.5e-40 Score=355.15 Aligned_cols=267 Identities=28% Similarity=0.326 Sum_probs=185.1
Q ss_pred CCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCC
Q 003970 129 VQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTN 208 (782)
Q Consensus 129 ~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~ 208 (782)
..+++|+||+|||||+|||.+||+|.+.. . ....|.+
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~-~----------------------------~~~~~~~-------------- 38 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRD-I----------------------------TTKSFVG-------------- 38 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCc-c----------------------------cCcccCC--------------
Confidence 45789999999999999999999997543 0 0011111
Q ss_pred CCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcCCc
Q 003970 209 REYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVD 288 (782)
Q Consensus 209 ~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~gvd 288 (782)
...+.|..||||||||||+|+..+ +...||||+|+|+.+|++.... ......+++||+||++.|++
T Consensus 39 --~~~~~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~---~~~~~~i~~ai~~a~~~g~~ 104 (297)
T cd07480 39 --GEDVQDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDG---GGGDGGILAGIQWAVANGAD 104 (297)
T ss_pred --CCCCCCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCC---CCcHHHHHHHHHHHHHcCCC
Confidence 112467899999999999998643 2247999999999999998765 47778899999999999999
Q ss_pred EEEecccCCCC--------CCCCccChHHHHHHhh---------------hccCceEEEecCCCCCCCCCccc---C--C
Q 003970 289 VISASFGESPP--------LRPFFASNADIGSFNA---------------MQHGVTVVFSGGNDGPEPSLVQN---V--A 340 (782)
Q Consensus 289 VIn~SlG~~~~--------~~~~~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~G~~~~~~~~---~--a 340 (782)
|||+|||.... ........+......+ .++|++||+||||+|........ + .
T Consensus 105 Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~ 184 (297)
T cd07480 105 VISMSLGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAAC 184 (297)
T ss_pred EEEeccCCCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCcccc
Confidence 99999998631 0001111222222223 68999999999999864332211 1 2
Q ss_pred CceEEecccccCcccceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHH
Q 003970 341 PWSICVAASSIDRTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTE 420 (782)
Q Consensus 341 p~vitVgAs~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~ 420 (782)
++++.|++...
T Consensus 185 ~~~~~V~~V~~--------------------------------------------------------------------- 195 (297)
T cd07480 185 PSAMGVAAVGA--------------------------------------------------------------------- 195 (297)
T ss_pred ccccEEEEECC---------------------------------------------------------------------
Confidence 33344443211
Q ss_pred HHHHHHHHcCceEEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCC
Q 003970 421 EAEAAAKKANASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRG 500 (782)
Q Consensus 421 ~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~G 500 (782)
.+....|+++.
T Consensus 196 ---------------------------------------------------------------------~~~~~~~~~~~ 206 (297)
T cd07480 196 ---------------------------------------------------------------------LGRTGNFSAVA 206 (297)
T ss_pred ---------------------------------------------------------------------CCCCCCccccC
Confidence 01112223332
Q ss_pred CCCCCCCCcccceeecCceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 003970 501 PSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMT 580 (782)
Q Consensus 501 p~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~ 580 (782)
+. ...||||+|||.+|+++.+.. .|..++|||||||+|||++|||+|++|.+++.+++.+|+.
T Consensus 207 ~~----~~~~~dv~ApG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~ 269 (297)
T cd07480 207 NF----SNGEVDIAAPGVDIVSAAPGG-------------GYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQA 269 (297)
T ss_pred CC----CCCceEEEeCCCCeEeecCCC-------------cEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHH
Confidence 22 234789999999999998765 8999999999999999999999999999999888888874
Q ss_pred ccccCCCCCCccccCCCCCcCCCCCccccccCcc
Q 003970 581 TAYTRDTSHDSILAGGSMKVSDPFDIGAGHINPM 614 (782)
Q Consensus 581 TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~ 614 (782)
........ .........++|+|++++.
T Consensus 270 ~l~~~~~~-------~~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 270 RLTAARTT-------QFAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred HHhhcccC-------CCCCCCChhhcCCceeecC
Confidence 33221100 1111235668999999875
No 27
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.5e-40 Score=345.17 Aligned_cols=241 Identities=32% Similarity=0.385 Sum_probs=188.7
Q ss_pred cEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCCCCCCCCCC
Q 003970 137 IVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRSARD 216 (782)
Q Consensus 137 V~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~~~D 216 (782)
|+|||||+|||++||+|++.. +. +.+ +.+.. ....+.|
T Consensus 1 V~VaviDsGi~~~hp~l~~~~---~~-----------------------~~~-~~~~~---------------~~~~~~~ 38 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP---KL-----------------------VPG-WNFVS---------------NNDPTSD 38 (242)
T ss_pred CEEEEecCCCCCCChhhccCc---Cc-----------------------cCC-ccccC---------------CCCCCCC
Confidence 789999999999999997531 00 000 00000 1113567
Q ss_pred CCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcCCcEEEecccC
Q 003970 217 FLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVISASFGE 296 (782)
Q Consensus 217 ~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG~ 296 (782)
..+|||||||||+|+..++ ..+.||||+|+|+.+|++...+ .+..+++.++++|+++.+++|||||||.
T Consensus 39 ~~~HGT~vAgiiag~~~~~--------~~~~Gvap~a~i~~~~~~~~~~---~~~~~~~~~ai~~a~~~~~~Vin~S~g~ 107 (242)
T cd07498 39 IDGHGTACAGVAAAVGNNG--------LGVAGVAPGAKLMPVRIADSLG---YAYWSDIAQAITWAADNGADVISNSWGG 107 (242)
T ss_pred CCCCHHHHHHHHHhccCCC--------ceeEeECCCCEEEEEEEECCCC---CccHHHHHHHHHHHHHCCCeEEEeccCC
Confidence 8999999999999986322 2368999999999999998765 4788999999999999999999999998
Q ss_pred CCCCCCCccChHHHHHHhhhc-cCceEEEecCCCCCCCCCcccCCCceEEecccccCcccceeEEeCCccEEEeeeeecc
Q 003970 297 SPPLRPFFASNADIGSFNAMQ-HGVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRTFPTEIVVNSDFSIVGESFIST 375 (782)
Q Consensus 297 ~~~~~~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~d~~~~~~~~~~~~~~~~g~~~~~~ 375 (782)
... .......+..++.++.+ +|+++|+||||+|......+...+++|+|||++.
T Consensus 108 ~~~-~~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~------------------------ 162 (242)
T cd07498 108 SDS-TESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDS------------------------ 162 (242)
T ss_pred CCC-CchHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCC------------------------
Confidence 742 22334566677777888 9999999999999776666667899999998542
Q ss_pred cceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCccccccccccEEEE
Q 003970 376 EVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEVDIIPTVRI 455 (782)
Q Consensus 376 ~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i 455 (782)
T Consensus 163 -------------------------------------------------------------------------------- 162 (242)
T cd07498 163 -------------------------------------------------------------------------------- 162 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEEeecCCCCCCCCCCC
Q 003970 456 DIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPS 535 (782)
Q Consensus 456 ~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~ 535 (782)
.+.+++||++||. +|++|||.++.......... .
T Consensus 163 ----------------------------------~~~~~~~s~~g~~--------~~~~apG~~~~~~~~~~~~~----~ 196 (242)
T cd07498 163 ----------------------------------NDARASYSNYGNY--------VDLVAPGVGIWTTGTGRGSA----G 196 (242)
T ss_pred ----------------------------------CCCccCcCCCCCC--------eEEEeCcCCcccCCcccccc----c
Confidence 2346899999998 49999999998875442111 1
Q ss_pred CCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 003970 536 DGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTT 581 (782)
Q Consensus 536 ~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~T 581 (782)
+.....|..++|||||||+|||++|||+|++|+|+++|||++|++|
T Consensus 197 ~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 197 DYPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred cCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 1223478899999999999999999999999999999999999976
No 28
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.2e-40 Score=346.31 Aligned_cols=253 Identities=27% Similarity=0.372 Sum_probs=192.0
Q ss_pred CCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCCCCCCCC
Q 003970 135 DDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRSA 214 (782)
Q Consensus 135 ~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (782)
+||+|||||||||++||+|.+..........+.+....+..|. +...+.++. ....++
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~----------------~~~~~~ 59 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNMWVNPGEIPGNGIDDDGNGYV------DDIYGWNFV----------------NNDNDP 59 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccccccCcccccccCcccCCCCcc------cCCCccccc----------------CCCCCC
Confidence 6999999999999999999865311110001111111111110 000111100 122456
Q ss_pred CCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcCCcEEEecc
Q 003970 215 RDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVISASF 294 (782)
Q Consensus 215 ~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~Sl 294 (782)
.|..+|||||||||+|...++. .+.||||+|+|+.+|++...+ .++..+++++|+++++.+++|||+||
T Consensus 60 ~d~~~HGT~va~ii~~~~~~~~--------~~~GvAp~a~l~~~~~~~~~~---~~~~~~~~~a~~~a~~~~~~vin~S~ 128 (259)
T cd07473 60 MDDNGHGTHVAGIIGAVGNNGI--------GIAGVAWNVKIMPLKFLGADG---SGTTSDAIKAIDYAVDMGAKIINNSW 128 (259)
T ss_pred CCCCCcHHHHHHHHHCcCCCCC--------ceEEeCCCCEEEEEEEeCCCC---CcCHHHHHHHHHHHHHCCCeEEEeCC
Confidence 7889999999999999864322 358999999999999998776 58899999999999999999999999
Q ss_pred cCCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCC---CCccc--CCCceEEecccccCcccceeEEeCCccEEEe
Q 003970 295 GESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEP---SLVQN--VAPWSICVAASSIDRTFPTEIVVNSDFSIVG 369 (782)
Q Consensus 295 G~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~---~~~~~--~ap~vitVgAs~~d~~~~~~~~~~~~~~~~g 369 (782)
|... ....+..++.++.++|+++|+||||+|... ..++. ..+++|+||+.+.
T Consensus 129 G~~~-----~~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~------------------ 185 (259)
T cd07473 129 GGGG-----PSQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDS------------------ 185 (259)
T ss_pred CCCC-----CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCC------------------
Confidence 9884 245677788889999999999999998652 22332 2478999998432
Q ss_pred eeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCcccccccc
Q 003970 370 ESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEVDI 449 (782)
Q Consensus 370 ~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~ 449 (782)
T Consensus 186 -------------------------------------------------------------------------------- 185 (259)
T cd07473 186 -------------------------------------------------------------------------------- 185 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEEeecCCCCC
Q 003970 450 IPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTP 529 (782)
Q Consensus 450 ~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~ 529 (782)
.+.++.||++||.. ||+.|||.++++..+..
T Consensus 186 ----------------------------------------~~~~~~~s~~g~~~-------~~~~apG~~~~~~~~~~-- 216 (259)
T cd07473 186 ----------------------------------------NDALASFSNYGKKT-------VDLAAPGVDILSTSPGG-- 216 (259)
T ss_pred ----------------------------------------CCCcCcccCCCCCC-------cEEEeccCCeEeccCCC--
Confidence 23456799999873 79999999999976654
Q ss_pred CCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 003970 530 PTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAY 583 (782)
Q Consensus 530 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~ 583 (782)
.|..++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 217 -----------~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 217 -----------GYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred -----------cEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 8999999999999999999999999999999999999999984
No 29
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3e-40 Score=348.71 Aligned_cols=248 Identities=19% Similarity=0.120 Sum_probs=177.6
Q ss_pred CCCccCCCCC-CCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccC
Q 003970 123 TGEVTPVQLA-YGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYG 201 (782)
Q Consensus 123 ~~~~~~~~~~-~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~ 201 (782)
++.++|+... .|+||+|+|||+|||.+||||.+.. ... .
T Consensus 3 ~~~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~-~~~-------------------------------~-------- 42 (277)
T cd04843 3 NARYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNG-ITL-------------------------------I-------- 42 (277)
T ss_pred ChHHHHHhcCCCCCcEEEEEecCCCCCCChhhcccc-ccc-------------------------------c--------
Confidence 5678898744 4899999999999999999997542 000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHH
Q 003970 202 PLNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDD 281 (782)
Q Consensus 202 ~~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~ 281 (782)
....+.|+.+|||||||||+|..+ + ..+.||||+|+|+.+|++. .++++++|.+
T Consensus 43 --------~~~~~~d~~gHGT~VAGiIaa~~n-~--------~G~~GvAp~a~l~~i~v~~---------~~~~~~ai~~ 96 (277)
T cd04843 43 --------SGLTDQADSDHGTAVLGIIVAKDN-G--------IGVTGIAHGAQAAVVSSTR---------VSNTADAILD 96 (277)
T ss_pred --------CCCCCCCCCCCcchhheeeeeecC-C--------CceeeeccCCEEEEEEecC---------CCCHHHHHHH
Confidence 001245788999999999998631 1 1258999999999999975 2345566666
Q ss_pred Hhh----cCCcEEEecccCCCCCCC----CccChHHHHHHhhhccCceEEEecCCCCCCCCCcc----------c---CC
Q 003970 282 ALH----DGVDVISASFGESPPLRP----FFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQ----------N---VA 340 (782)
Q Consensus 282 a~~----~gvdVIn~SlG~~~~~~~----~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~----------~---~a 340 (782)
|++ .++.+||||||....... .....+..++.+|.++|+++|+||||++....... . ..
T Consensus 97 A~~~~~~~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~ 176 (277)
T cd04843 97 AADYLSPGDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRD 176 (277)
T ss_pred HHhccCCCCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCC
Confidence 666 356789999998731010 11233456777888999999999999986421111 1 13
Q ss_pred CceEEecccccCcccceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHH
Q 003970 341 PWSICVAASSIDRTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTE 420 (782)
Q Consensus 341 p~vitVgAs~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~ 420 (782)
+++|+|||++.+.
T Consensus 177 ~~vI~VgA~~~~~------------------------------------------------------------------- 189 (277)
T cd04843 177 SGAIMVGAGSSTT------------------------------------------------------------------- 189 (277)
T ss_pred CCeEEEEeccCCC-------------------------------------------------------------------
Confidence 5788888753210
Q ss_pred HHHHHHHHcCceEEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCC
Q 003970 421 EAEAAAKKANASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRG 500 (782)
Q Consensus 421 ~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~G 500 (782)
...++.||++|
T Consensus 190 ---------------------------------------------------------------------~~~~~~fSn~G 200 (277)
T cd04843 190 ---------------------------------------------------------------------GHTRLAFSNYG 200 (277)
T ss_pred ---------------------------------------------------------------------CCccccccCCC
Confidence 11268999999
Q ss_pred CCCCCCCCcccceeecCceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHH----h-CCCCCHHHHH
Q 003970 501 PSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKS----A-HPNWSPAAIR 575 (782)
Q Consensus 501 p~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~-~P~lsp~~Ik 575 (782)
+. +||.|||++|+++.+..... ........|..++|||||||||||++|||++ + +|+|+|+|||
T Consensus 201 ~~--------vdi~APG~~i~s~~~~~~~~---~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~ 269 (277)
T cd04843 201 SR--------VDVYGWGENVTTTGYGDLQD---LGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMR 269 (277)
T ss_pred Cc--------cceEcCCCCeEecCCCCccc---ccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHH
Confidence 97 49999999999998764321 0111112457899999999999999999975 3 4999999999
Q ss_pred HHHHhccc
Q 003970 576 SALMTTAY 583 (782)
Q Consensus 576 ~~L~~TA~ 583 (782)
++|+.|+.
T Consensus 270 ~~L~~t~~ 277 (277)
T cd04843 270 ELLTATGT 277 (277)
T ss_pred HHHHhcCC
Confidence 99999974
No 30
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=2.2e-39 Score=335.16 Aligned_cols=227 Identities=32% Similarity=0.443 Sum_probs=186.4
Q ss_pred CcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCCCCCCCCC
Q 003970 136 DIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRSAR 215 (782)
Q Consensus 136 gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (782)
||+|||||+||+++||+|.+.. +....|... ......
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~~-----------------------------~~~~~~~~~--------------~~~~~~ 37 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLNI-----------------------------VGGANFTGD--------------DNNDYQ 37 (229)
T ss_pred CCEEEEEcCCCCCCChhHhccc-----------------------------cCcccccCC--------------CCCCCC
Confidence 7999999999999999997542 111111110 002455
Q ss_pred CCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcCCcEEEeccc
Q 003970 216 DFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVISASFG 295 (782)
Q Consensus 216 D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG 295 (782)
|..+|||||||||++..... .+.|+||+|+|+.+|+++..+ .....+++++++++++.+++|||+|||
T Consensus 38 ~~~~HGT~vA~ii~~~~~~~---------~~~giap~a~i~~~~~~~~~~---~~~~~~l~~ai~~a~~~~~~Vin~S~g 105 (229)
T cd07477 38 DGNGHGTHVAGIIAALDNGV---------GVVGVAPEADLYAVKVLNDDG---SGTYSDIIAGIEWAIENGMDIINMSLG 105 (229)
T ss_pred CCCCCHHHHHHHHhcccCCC---------ccEeeCCCCEEEEEEEECCCC---CcCHHHHHHHHHHHHHCCCCEEEECCc
Confidence 78899999999999975321 458999999999999998776 467789999999999999999999999
Q ss_pred CCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCCc--ccCCCceEEecccccCcccceeEEeCCccEEEeeeee
Q 003970 296 ESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLV--QNVAPWSICVAASSIDRTFPTEIVVNSDFSIVGESFI 373 (782)
Q Consensus 296 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~ap~vitVgAs~~d~~~~~~~~~~~~~~~~g~~~~ 373 (782)
... ....+..++..+.++|+++|+||||++...... +...+++|+||+++.
T Consensus 106 ~~~-----~~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~---------------------- 158 (229)
T cd07477 106 GPS-----DSPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDS---------------------- 158 (229)
T ss_pred cCC-----CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecC----------------------
Confidence 874 234566677788899999999999999776554 566799999998542
Q ss_pred cccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCccccccccccEE
Q 003970 374 STEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEVDIIPTV 453 (782)
Q Consensus 374 ~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~ 453 (782)
T Consensus 159 -------------------------------------------------------------------------------- 158 (229)
T cd07477 159 -------------------------------------------------------------------------------- 158 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEEeecCCCCCCCCC
Q 003970 454 RIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLL 533 (782)
Q Consensus 454 ~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~ 533 (782)
.+.++.||++|+. +|++|||.+|+++++.+
T Consensus 159 ------------------------------------~~~~~~~s~~g~~--------~~~~apg~~i~~~~~~~------ 188 (229)
T cd07477 159 ------------------------------------NNNRASFSSTGPE--------VELAAPGVDILSTYPNN------ 188 (229)
T ss_pred ------------------------------------CCCcCCccCCCCC--------ceEEeCCCCeEEecCCC------
Confidence 2345689999987 59999999999998875
Q ss_pred CCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 003970 534 PSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTT 581 (782)
Q Consensus 534 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~T 581 (782)
.|..++|||||||+|||++|||+|++|++++.+||++|++|
T Consensus 189 -------~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 189 -------DYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred -------CEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 78999999999999999999999999999999999999986
No 31
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.4e-39 Score=335.31 Aligned_cols=162 Identities=21% Similarity=0.192 Sum_probs=118.4
Q ss_pred CCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCCCCCCC
Q 003970 134 GDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRS 213 (782)
Q Consensus 134 G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (782)
+++|+|||||||||++||+|++.- ..+.+|. ...... ......
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~i-------------~~~~~~~----------------~~~~~~--------~~~~~~ 44 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGKI-------------IGGKSFS----------------PYEGDG--------NKVSPY 44 (247)
T ss_pred CCCCEEEEECCCcCCCchhhcccc-------------ccCCCCC----------------CCCCCc--------ccCCCC
Confidence 689999999999999999997431 0011111 110000 001112
Q ss_pred CCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCC---CCCCHHHHHHHHHHHhhcCCcEE
Q 003970 214 ARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSD---GKCTEADILAAFDDALHDGVDVI 290 (782)
Q Consensus 214 ~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~---~~~~~~~i~~ai~~a~~~gvdVI 290 (782)
..|..||||||||||+ |+||+|+|+.+|+++..+.. ..+....+++||+||+++|+|||
T Consensus 45 ~~d~~gHGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadII 106 (247)
T cd07491 45 YVSADGHGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDII 106 (247)
T ss_pred CCCCCCcHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEE
Confidence 3468899999999996 57999999999999865421 13567889999999999999999
Q ss_pred EecccCCCCC-CCCccChHHHHHHhhhccCceEEEecCCCCCCCC-Ccc--cCCCceEEecccc
Q 003970 291 SASFGESPPL-RPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPS-LVQ--NVAPWSICVAASS 350 (782)
Q Consensus 291 n~SlG~~~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~--~~ap~vitVgAs~ 350 (782)
|||||...+. .......+..++.+|.++|++||+||||+|.... .+. ...|++|+|||++
T Consensus 107 n~S~g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~ 170 (247)
T cd07491 107 SMSWTIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAAD 170 (247)
T ss_pred EeeeecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeC
Confidence 9999987410 0112566788888999999999999999997654 333 3468999999954
No 32
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=9e-39 Score=343.30 Aligned_cols=210 Identities=29% Similarity=0.318 Sum_probs=156.1
Q ss_pred CCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcCCcEEE
Q 003970 212 RSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVIS 291 (782)
Q Consensus 212 ~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn 291 (782)
....|..||||||||+|+|+.. ..||||+|+|+.+|+++..+ .....+++++|++|++++++|||
T Consensus 47 ~~~~d~~gHGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~~---~~~~~~~~~ai~~a~~~~~~vin 111 (294)
T cd07482 47 NDIVDKLGHGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSCG---SAESSWIIKAIIDAADDGVDVIN 111 (294)
T ss_pred CcCCCCCCcHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCCC---CcCHHHHHHHHHHHHHCCCCEEE
Confidence 3556789999999999998642 25999999999999998776 35889999999999999999999
Q ss_pred ecccCCCCCCC------CccChHHHHHHhhhccCceEEEecCCCCCCCCC----------------------cccCCCce
Q 003970 292 ASFGESPPLRP------FFASNADIGSFNAMQHGVTVVFSGGNDGPEPSL----------------------VQNVAPWS 343 (782)
Q Consensus 292 ~SlG~~~~~~~------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~----------------------~~~~ap~v 343 (782)
+|||....... .....+..++..+.++|++||+||||+|..... .+...+++
T Consensus 112 ~S~G~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v 191 (294)
T cd07482 112 LSLGGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNV 191 (294)
T ss_pred eCCccCCCCCcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCce
Confidence 99998632010 111335566667889999999999999864311 11223566
Q ss_pred EEecccccCcccceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHH
Q 003970 344 ICVAASSIDRTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAE 423 (782)
Q Consensus 344 itVgAs~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~ 423 (782)
|+|||++.
T Consensus 192 i~Vga~~~------------------------------------------------------------------------ 199 (294)
T cd07482 192 ITVSATDN------------------------------------------------------------------------ 199 (294)
T ss_pred EEEEeeCC------------------------------------------------------------------------
Confidence 66665321
Q ss_pred HHHHHcCceEEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCC
Q 003970 424 AAAKKANASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSS 503 (782)
Q Consensus 424 ~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~ 503 (782)
.+.++.||++|+..
T Consensus 200 ------------------------------------------------------------------~~~~~~~S~~g~~~ 213 (294)
T cd07482 200 ------------------------------------------------------------------NGNLSSFSNYGNSR 213 (294)
T ss_pred ------------------------------------------------------------------CCCcCccccCCCCc
Confidence 34567899999874
Q ss_pred CCCCCcccceeecCceEEeecCCCCCC---CC------CCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCH-HH
Q 003970 504 ISPDILKPDITAPGIGVLAAWPPNTPP---TL------LPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSP-AA 573 (782)
Q Consensus 504 ~~~~~~KPDI~APG~~I~sa~~~~~~~---~~------~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp-~~ 573 (782)
+|++|||+++....+..... .. .........|..++|||||||+|||++|||+|++|.|++ .|
T Consensus 214 -------~~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p~~~~~~~ 286 (294)
T cd07482 214 -------IDLAAPGGDFLLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNPLKKPPDE 286 (294)
T ss_pred -------ceEECCCCCcccccccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCCCCCcHHH
Confidence 69999999885322211100 00 001123457899999999999999999999999999999 99
Q ss_pred HHHHHHhc
Q 003970 574 IRSALMTT 581 (782)
Q Consensus 574 Ik~~L~~T 581 (782)
||++|++|
T Consensus 287 v~~~L~~T 294 (294)
T cd07482 287 AIRILYNT 294 (294)
T ss_pred HHHHHhhC
Confidence 99999986
No 33
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=1.4e-39 Score=347.35 Aligned_cols=276 Identities=33% Similarity=0.445 Sum_probs=206.1
Q ss_pred EEEEeccccCCCCCCCC-CCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCCCCCCCCCC
Q 003970 138 VVGIFDTGVWPESESFQ-EEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRSARD 216 (782)
Q Consensus 138 ~VgVIDtGId~~Hp~f~-d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~~~D 216 (782)
+|||||||||++||+|. ..- ...++.+.+.|.+.. .......|
T Consensus 1 ~V~viDtGid~~h~~~~~~~~------------------------~~~~~~~~~~~~~~~------------~~~~~~~~ 44 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGNF------------------------IWSKVPGGYNFVDGN------------PNPSPSDD 44 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTTE------------------------EEEEEEEEEETTTTB------------STTTSSST
T ss_pred CEEEEcCCcCCCChhHccCCc------------------------ccccccceeeccCCC------------CCcCcccc
Confidence 69999999999999997 221 011222333333321 01235567
Q ss_pred CCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHh-hcCCcEEEeccc
Q 003970 217 FLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDAL-HDGVDVISASFG 295 (782)
Q Consensus 217 ~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~-~~gvdVIn~SlG 295 (782)
..+|||||||||+|.. . .. .....|+||+|+|+.+|++...+ ....+++++|++++ +++++|||+|||
T Consensus 45 ~~~HGT~va~ii~~~~-~-~~-----~~~~~Gva~~a~l~~~~i~~~~~----~~~~~~~~ai~~~~~~~~~~Vin~S~G 113 (282)
T PF00082_consen 45 DNGHGTHVAGIIAGNG-G-NN-----GPGINGVAPNAKLYSYKIFDNSG----GTSSDLIEAIEYAVKNDGVDVINLSFG 113 (282)
T ss_dssp SSSHHHHHHHHHHHTT-S-SS-----SSSETCSSTTSEEEEEECSSTTS----EEHHHHHHHHHHHHHHTTSSEEEECEE
T ss_pred CCCccchhhhhccccc-c-cc-----ccccccccccccccccccccccc----cccccccchhhhhhhccCCcccccccc
Confidence 8899999999999986 2 11 22358999999999999977653 67888999999999 899999999999
Q ss_pred CCCC-CCCCccChHHHHHHhhhccCceEEEecCCCCCCCCC-cc--cCCCceEEecccccCcccceeEEeCCccEEEeee
Q 003970 296 ESPP-LRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSL-VQ--NVAPWSICVAASSIDRTFPTEIVVNSDFSIVGES 371 (782)
Q Consensus 296 ~~~~-~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~-~~--~~ap~vitVgAs~~d~~~~~~~~~~~~~~~~g~~ 371 (782)
.... ........+..+...+.++|+++|+||||+|+.... +. ...+++|+||+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~-------------------- 173 (282)
T PF00082_consen 114 SNSGPPDPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDN-------------------- 173 (282)
T ss_dssp BEESSSHSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEET--------------------
T ss_pred ccccccccccccccccccccccccCcceeecccccccccccccccccccccccccccccc--------------------
Confidence 8310 011223334556668889999999999999876553 33 33588899998431
Q ss_pred eecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCcccccccccc
Q 003970 372 FISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEVDIIP 451 (782)
Q Consensus 372 ~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p 451 (782)
T Consensus 174 -------------------------------------------------------------------------------- 173 (282)
T PF00082_consen 174 -------------------------------------------------------------------------------- 173 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEEeecCCCCCCC
Q 003970 452 TVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPT 531 (782)
Q Consensus 452 ~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~ 531 (782)
.+.++.||++|+.. .++++||||+|||.+|+++++....
T Consensus 174 --------------------------------------~~~~~~~s~~g~~~-~~~~~~~di~a~G~~i~~~~~~~~~-- 212 (282)
T PF00082_consen 174 --------------------------------------NGQPASYSNYGGPS-DDGRIKPDIAAPGGNILSAVPGSDR-- 212 (282)
T ss_dssp --------------------------------------TSSBSTTSSBSTTE-TTCTTCEEEEEECSSEEEEETTTES--
T ss_pred --------------------------------------cccccccccccccc-ccccccccccccccccccccccccc--
Confidence 22458899997654 3789999999999999998876410
Q ss_pred CCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCcCCCCCcccccc
Q 003970 532 LLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAGHI 611 (782)
Q Consensus 532 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~v 611 (782)
..|..++|||||||+|||++|||+|++|+|++.+||.+|++||.++...+ ....+..||||+|
T Consensus 213 --------~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~---------~~~~~~~~G~G~i 275 (282)
T PF00082_consen 213 --------GSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN---------GEGYDNSYGWGLI 275 (282)
T ss_dssp --------EEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT---------SSSSHHHHTTSBE
T ss_pred --------ccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC---------CCCCCCCccCChh
Confidence 25889999999999999999999999999999999999999999876211 1235567899999
Q ss_pred CccccCC
Q 003970 612 NPMKAMD 618 (782)
Q Consensus 612 n~~~Al~ 618 (782)
|+.+|++
T Consensus 276 n~~~a~~ 282 (282)
T PF00082_consen 276 NAEKALN 282 (282)
T ss_dssp -HHHHHH
T ss_pred CHHHHhC
Confidence 9999874
No 34
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.6e-38 Score=325.45 Aligned_cols=222 Identities=22% Similarity=0.227 Sum_probs=173.7
Q ss_pred CcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCCCCCCCCC
Q 003970 136 DIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRSAR 215 (782)
Q Consensus 136 gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (782)
||+|||||||||++||+|.+.... +..|. + ..+ ........
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~-------------~~~~~----~-----------~~~-----------~~~~~~~~ 41 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALD-------------GEVTI----D-----------LEI-----------IVVSAEGG 41 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccc-------------ccccc----c-----------ccc-----------ccCCCCCC
Confidence 799999999999999999754300 00000 0 000 00123456
Q ss_pred CCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcCCcEEEeccc
Q 003970 216 DFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVISASFG 295 (782)
Q Consensus 216 D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG 295 (782)
|..||||||||||++. +|+++|+.+|+++..+ .+..+++++||+|+++++++|||||||
T Consensus 42 d~~gHGT~vAgiia~~------------------~p~~~i~~~~v~~~~~---~~~~~~~~~ai~~a~~~~v~Vin~S~G 100 (222)
T cd07492 42 DKDGHGTACAGIIKKY------------------APEAEIGSIKILGEDG---RCNSFVLEKALRACVENDIRIVNLSLG 100 (222)
T ss_pred CCCCcHHHHHHHHHcc------------------CCCCeEEEEEEeCCCC---CcCHHHHHHHHHHHHHCCCCEEEeCCC
Confidence 7899999999999854 5999999999998776 588899999999999999999999999
Q ss_pred CCCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCCcccCCCceEEecccccCcccceeEEeCCccEEEeeeeecc
Q 003970 296 ESPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNVAPWSICVAASSIDRTFPTEIVVNSDFSIVGESFIST 375 (782)
Q Consensus 296 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~d~~~~~~~~~~~~~~~~g~~~~~~ 375 (782)
... ......+..++.++.++|+++|+||||++..... +...+.+|+|++...++
T Consensus 101 ~~~---~~~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~~-Pa~~~~vi~V~~~~~~~---------------------- 154 (222)
T cd07492 101 GPG---DRDFPLLKELLEYAYKAGGIIVAAAPNNNDIGTP-PASFPNVIGVKSDTADD---------------------- 154 (222)
T ss_pred CCC---CCcCHHHHHHHHHHHHCCCEEEEECCCCCCCCCC-CccCCceEEEEecCCCC----------------------
Confidence 874 2233556677788888999999999999865332 45568899999743211
Q ss_pred cceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCccccccccccEEEE
Q 003970 376 EVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEVDIIPTVRI 455 (782)
Q Consensus 376 ~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i 455 (782)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEEeecCCCCCCCCCCC
Q 003970 456 DIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLLPS 535 (782)
Q Consensus 456 ~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~ 535 (782)
.. +.+++ ++|+.|||.+|+++.+.+
T Consensus 155 ------------------------------------~~---~~~~~--------~~~~~apg~~i~~~~~~~-------- 179 (222)
T cd07492 155 ------------------------------------PK---SFWYI--------YVEFSADGVDIIAPAPHG-------- 179 (222)
T ss_pred ------------------------------------Cc---ccccC--------CceEEeCCCCeEeecCCC--------
Confidence 00 11133 369999999999998774
Q ss_pred CCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 003970 536 DGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAY 583 (782)
Q Consensus 536 ~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~ 583 (782)
.|..++|||||||+|||++|||+|++|+|+++|||++|++||+
T Consensus 180 -----~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 180 -----RYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred -----CEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 7999999999999999999999999999999999999999985
No 35
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=9.2e-39 Score=343.72 Aligned_cols=252 Identities=21% Similarity=0.187 Sum_probs=180.9
Q ss_pred CCCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccC
Q 003970 122 NTGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYG 201 (782)
Q Consensus 122 ~~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~ 201 (782)
+++..+|..+++|+||+|+|||||||++||+|.+.. ... ..+.|....
T Consensus 26 ~~~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~-~~~--------------------------~~~~~~~~~----- 73 (297)
T cd04059 26 LNVTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNY-DPE--------------------------ASYDFNDND----- 73 (297)
T ss_pred cccHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcc-ccc--------------------------ccccccCCC-----
Confidence 367889999999999999999999999999997543 000 001111100
Q ss_pred CCCCCCCCCCCCC--CCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHH
Q 003970 202 PLNASTNREYRSA--RDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAF 279 (782)
Q Consensus 202 ~~~~~~~~~~~~~--~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai 279 (782)
....+ .|..||||||||||+|+..+.. ...||||+|+|+.+|++... ........++
T Consensus 74 --------~~~~~~~~~~~gHGT~vAgiiag~~~~~~--------~~~GvAp~a~l~~~~~~~~~-----~~~~~~~~~~ 132 (297)
T cd04059 74 --------PDPTPRYDDDNSHGTRCAGEIAAVGNNGI--------CGVGVAPGAKLGGIRMLDGD-----VTDVVEAESL 132 (297)
T ss_pred --------CCCCCccccccccCcceeeEEEeecCCCc--------ccccccccceEeEEEecCCc-----cccHHHHHHH
Confidence 00112 2788999999999999863321 24899999999999998754 3334555666
Q ss_pred HHHhhcCCcEEEecccCCCCCC--CCccChHHHHHHhhhc-----cCceEEEecCCCCCCCCC--c--ccCCCceEEecc
Q 003970 280 DDALHDGVDVISASFGESPPLR--PFFASNADIGSFNAMQ-----HGVTVVFSGGNDGPEPSL--V--QNVAPWSICVAA 348 (782)
Q Consensus 280 ~~a~~~gvdVIn~SlG~~~~~~--~~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~G~~~~~--~--~~~ap~vitVgA 348 (782)
.++.+ .++|||+|||...... .........++.++.. +|++||+||||+|..... . ....+++|+|||
T Consensus 133 ~~~~~-~~~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga 211 (297)
T cd04059 133 GLNPD-YIDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSA 211 (297)
T ss_pred hcccC-CceEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEe
Confidence 66554 4599999999874201 1112223334444432 799999999999973222 1 123588999998
Q ss_pred cccCcccceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHH
Q 003970 349 SSIDRTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKK 428 (782)
Q Consensus 349 s~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~ 428 (782)
++.
T Consensus 212 ~~~----------------------------------------------------------------------------- 214 (297)
T cd04059 212 VTA----------------------------------------------------------------------------- 214 (297)
T ss_pred eCC-----------------------------------------------------------------------------
Confidence 542
Q ss_pred cCceEEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCC
Q 003970 429 ANASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDI 508 (782)
Q Consensus 429 ~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~ 508 (782)
.+.++.||++|+..
T Consensus 215 -------------------------------------------------------------~g~~~~~s~~g~~~----- 228 (297)
T cd04059 215 -------------------------------------------------------------NGVRASYSEVGSSV----- 228 (297)
T ss_pred -------------------------------------------------------------CCCCcCCCCCCCcE-----
Confidence 23467899999984
Q ss_pred cccceeecCce-------EEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 003970 509 LKPDITAPGIG-------VLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTT 581 (782)
Q Consensus 509 ~KPDI~APG~~-------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~T 581 (782)
++.|||.. |+++.... ....|..++|||||||+|||++|||+|+||+|++.|||++|++|
T Consensus 229 ---~~~a~g~~~~~~~~~i~~~~~~~----------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~T 295 (297)
T cd04059 229 ---LASAPSGGSGNPEASIVTTDLGG----------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALT 295 (297)
T ss_pred ---EEEecCCCCCCCCCceEeCCCCC----------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHh
Confidence 89999987 66665542 01267889999999999999999999999999999999999999
Q ss_pred cc
Q 003970 582 AY 583 (782)
Q Consensus 582 A~ 583 (782)
|+
T Consensus 296 A~ 297 (297)
T cd04059 296 AR 297 (297)
T ss_pred cC
Confidence 85
No 36
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=5e-37 Score=324.72 Aligned_cols=246 Identities=30% Similarity=0.373 Sum_probs=186.4
Q ss_pred CCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCCCCCC
Q 003970 133 YGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYR 212 (782)
Q Consensus 133 ~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~ 212 (782)
+|+||+|+|||+||+++||+|.+... .. . . +.... .....
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~-~~-------~-----~----------------~~~~~-----------~~~~~ 40 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVS-EA-------S-----Y----------------YVAVN-----------DAGYA 40 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCccc-cc-------c-----c----------------ccccc-----------cccCC
Confidence 69999999999999999999986530 00 0 0 00000 00012
Q ss_pred CCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcCCcEEEe
Q 003970 213 SARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVISA 292 (782)
Q Consensus 213 ~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~ 292 (782)
...|..+|||||||+|+|+..+ ..+.|+||+|+|+.+|+++..+. .+....+.++++++++.+++|||+
T Consensus 41 ~~~~~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Vin~ 109 (267)
T cd04848 41 SNGDGDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGS--TFSDADIAAAYDFLAASGVRIINN 109 (267)
T ss_pred CCCCCCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCc--ccchHHHHHHHHHHHhCCCeEEEc
Confidence 4457889999999999998643 34689999999999999987531 267788999999999999999999
Q ss_pred cccCCCCCCC----------CccChHHHHHHhhhccCceEEEecCCCCCCCCCcc---------cCCCceEEecccccCc
Q 003970 293 SFGESPPLRP----------FFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQ---------NVAPWSICVAASSIDR 353 (782)
Q Consensus 293 SlG~~~~~~~----------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~---------~~ap~vitVgAs~~d~ 353 (782)
|||....... .....+......+.++|+++|+||||++....... ...+++|+||+.+.+.
T Consensus 110 S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~ 189 (267)
T cd04848 110 SWGGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG 189 (267)
T ss_pred cCCCCCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC
Confidence 9998852110 13455666777888999999999999986543332 2357899999855321
Q ss_pred ccceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceE
Q 003970 354 TFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASG 433 (782)
Q Consensus 354 ~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g 433 (782)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCcccc--ccCCCCCCCCCCCccc
Q 003970 434 LIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAY--FSSRGPSSISPDILKP 511 (782)
Q Consensus 434 ~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSS~Gp~~~~~~~~KP 511 (782)
.... ||++|+.. -.+
T Consensus 190 ----------------------------------------------------------~~~~~~~s~~~~~~-----~~~ 206 (267)
T cd04848 190 ----------------------------------------------------------TIASYSYSNRCGVA-----ANW 206 (267)
T ss_pred ----------------------------------------------------------Ccccccccccchhh-----hhh
Confidence 1223 48888653 235
Q ss_pred ceeecCceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 003970 512 DITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAY 583 (782)
Q Consensus 512 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~ 583 (782)
+++|||.+|+++.+... ..|..++|||||||+|||++|||+|++|+|++++||++|++||+
T Consensus 207 ~~~apG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 207 CLAAPGENIYSTDPDGG-----------NGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred eeecCcCceeecccCCC-----------CcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 79999999999887411 17889999999999999999999999999999999999999985
No 37
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-36 Score=323.35 Aligned_cols=358 Identities=23% Similarity=0.286 Sum_probs=270.3
Q ss_pred CceEEEEeCCCCCCCCchhhHHHHHHHHHHhCCchhh------ccceEEEeeeeeeeEEEEeCH-----HHHHHHhcCcC
Q 003970 27 SHVYIVYLGHNRHCDPNLISKSHLQLLSSVFASEEDA------KRSLLYGYKYSFSGFSAKLNS-----SQAASLAEMEE 95 (782)
Q Consensus 27 ~~~yIV~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~i~~~y~~~~ng~s~~l~~-----~~~~~L~~~p~ 95 (782)
+..|||+|+... ..+.|+..+++.+...+-. +.....+|-.-|.-+-++-.. -++++|..+|.
T Consensus 49 e~EyIv~F~~y~------~Ak~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~ 122 (1033)
T KOG4266|consen 49 ESEYIVRFKQYK------PAKDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPD 122 (1033)
T ss_pred cceeEEEecccc------cchHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcCCC
Confidence 356999999752 2355666776665432211 111234566666665554332 35899999999
Q ss_pred eEEEEecceeeccc------------c----------ccc-------------ccc----cccccCCCCccCCCCCCCCC
Q 003970 96 VISIFESQVLKLHT------------T----------RSW-------------DFM----GLILDNTGEVTPVQLAYGDD 136 (782)
Q Consensus 96 V~~V~~~~~~~~~~------------~----------~s~-------------~~~----gl~~~~~~~~~~~~~~~G~g 136 (782)
|+.|.|-+.+.... + +++ ... ++.+..+++-+|..|++|++
T Consensus 123 vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~GyTGa~ 202 (1033)
T KOG4266|consen 123 VKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGYTGAK 202 (1033)
T ss_pred ceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccccCCc
Confidence 99999987653210 0 000 000 11111467889999999999
Q ss_pred cEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCCCCCCCCCCCCCCCC
Q 003970 137 IVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGPLNASTNREYRSARD 216 (782)
Q Consensus 137 V~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~~~D 216 (782)
|+|||.|||+..+||.|+.-- . .-.|. | ...-.|
T Consensus 203 VkvAiFDTGl~~~HPHFrnvK--E--RTNWT---------------N---------------------------E~tLdD 236 (1033)
T KOG4266|consen 203 VKVAIFDTGLRADHPHFRNVK--E--RTNWT---------------N---------------------------EDTLDD 236 (1033)
T ss_pred eEEEEeecccccCCccccchh--h--hcCCc---------------C---------------------------cccccc
Confidence 999999999999999997432 0 00111 0 123446
Q ss_pred CCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcCCcEEEecccC
Q 003970 217 FLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVISASFGE 296 (782)
Q Consensus 217 ~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG~ 296 (782)
.-||||.|||+|||.. ...|.||+++|+++|||.+.. -.+.+.+++|+.||+...+||+|+|+|+
T Consensus 237 ~lgHGTFVAGvia~~~------------ec~gfa~d~e~~~frvft~~q---VSYTSWFLDAFNYAI~~kidvLNLSIGG 301 (1033)
T KOG4266|consen 237 NLGHGTFVAGVIAGRN------------ECLGFASDTEIYAFRVFTDAQ---VSYTSWFLDAFNYAIATKIDVLNLSIGG 301 (1033)
T ss_pred CcccceeEeeeeccch------------hhcccCCccceeEEEeeccce---eehhhHHHHHHHHHHhhhcceEeeccCC
Confidence 8899999999999874 247999999999999999877 5889999999999999999999999999
Q ss_pred CCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCCcccCCC--ceEEecccccCcccceeEEeCCccEEEeeeeec
Q 003970 297 SPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNVAP--WSICVAASSIDRTFPTEIVVNSDFSIVGESFIS 374 (782)
Q Consensus 297 ~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap--~vitVgAs~~d~~~~~~~~~~~~~~~~g~~~~~ 374 (782)
+. +.+.++..-+.......|++|.|+||+||-.++..+++. .||.||..
T Consensus 302 PD----fmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGI------------------------- 352 (1033)
T KOG4266|consen 302 PD----FMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGI------------------------- 352 (1033)
T ss_pred cc----cccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeeccc-------------------------
Confidence 74 678888888888889999999999999999999998864 46666641
Q ss_pred ccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCccccccccccEEE
Q 003970 375 TEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEVDIIPTVR 454 (782)
Q Consensus 375 ~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~ 454 (782)
T Consensus 353 -------------------------------------------------------------------------------- 352 (1033)
T KOG4266|consen 353 -------------------------------------------------------------------------------- 352 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCC----CCCCcccceeecCceEEeecCCCCCC
Q 003970 455 IDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSI----SPDILKPDITAPGIGVLAAWPPNTPP 530 (782)
Q Consensus 455 i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~----~~~~~KPDI~APG~~I~sa~~~~~~~ 530 (782)
+..+.++.|||||-+.+ .-|++||||++-|.+|....-..
T Consensus 353 ---------------------------------dfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~~--- 396 (1033)
T KOG4266|consen 353 ---------------------------------DFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVST--- 396 (1033)
T ss_pred ---------------------------------cccchhhhhccCCcceeecCCcccccCCceEeeccccccCcccc---
Confidence 22567899999997643 34899999999999987765543
Q ss_pred CCCCCCCCccceeeeccccchhhHHHHHHHHHHH----hCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCcCCCCCc
Q 003970 531 TLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKS----AHPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDI 606 (782)
Q Consensus 531 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~lsp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~ 606 (782)
+...+||||.|+|.|||+++||.+ +.--+.|+.+|++|+..|.++... .-++|
T Consensus 397 ----------GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~-------------NMfEQ 453 (1033)
T KOG4266|consen 397 ----------GCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGP-------------NMFEQ 453 (1033)
T ss_pred ----------cchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCC-------------chhhc
Confidence 678899999999999999999977 234479999999999999988643 34689
Q ss_pred cccccCccccCCC
Q 003970 607 GAGHINPMKAMDP 619 (782)
Q Consensus 607 G~G~vn~~~Al~~ 619 (782)
|+|++|+.++.+-
T Consensus 454 GaGkldLL~syqi 466 (1033)
T KOG4266|consen 454 GAGKLDLLESYQI 466 (1033)
T ss_pred cCcchhHHHHHHH
Confidence 9999999888763
No 38
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-32 Score=304.59 Aligned_cols=242 Identities=29% Similarity=0.336 Sum_probs=184.0
Q ss_pred CCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcCCcEEEecccC
Q 003970 217 FLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGVDVISASFGE 296 (782)
Q Consensus 217 ~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG~ 296 (782)
..-|||||||||+|+.... ....||||+|+|+.+++.+..-+ ...+...+.+|+..++++.+||||||+|-
T Consensus 309 Sg~HGTHVAgIa~anhpe~--------p~~NGvAPgaqIvSl~IGD~RLg-sMETgtaltRA~~~v~e~~vDiINmSyGE 379 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPET--------PELNGVAPGAQIVSLKIGDGRLG-SMETGTALTRAMIEVIEHNVDIINMSYGE 379 (1304)
T ss_pred CCCCcceehhhhccCCCCC--------ccccCCCCCCEEEEEEecCcccc-ccccchHHHHHHHHHHHhcCCEEEeccCc
Confidence 3569999999999997543 24589999999999999765431 13456679999999999999999999998
Q ss_pred CCCCCCCccChHHHHHHhhhccCceEEEecCCCCCCCCCcccC---CCceEEecccccCcccceeEEeCCccEEEeeeee
Q 003970 297 SPPLRPFFASNADIGSFNAMQHGVTVVFSGGNDGPEPSLVQNV---APWSICVAASSIDRTFPTEIVVNSDFSIVGESFI 373 (782)
Q Consensus 297 ~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~---ap~vitVgAs~~d~~~~~~~~~~~~~~~~g~~~~ 373 (782)
... .+.....++..-..+.++|+++|+||||+||...|++.| ...+|.|||.-.....
T Consensus 380 ~a~-~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm------------------ 440 (1304)
T KOG1114|consen 380 DAH-LPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMM------------------ 440 (1304)
T ss_pred cCC-CCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHH------------------
Confidence 842 222334455555556699999999999999998888876 3579999984321100
Q ss_pred cccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCccccccccccEE
Q 003970 374 STEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEVDIIPTV 453 (782)
Q Consensus 374 ~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~ 453 (782)
T Consensus 441 -------------------------------------------------------------------------------- 440 (1304)
T KOG1114|consen 441 -------------------------------------------------------------------------------- 440 (1304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCceEEeecCCCCCCCCC
Q 003970 454 RIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIGVLAAWPPNTPPTLL 533 (782)
Q Consensus 454 ~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~ 533 (782)
+.. |-- -.+.......+|||||+. ||.+-..|.|||+.|-+- |...
T Consensus 441 -------~a~--y~~-----------------~e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsV-P~~t----- 486 (1304)
T KOG1114|consen 441 -------QAE--YSV-----------------REPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASV-PQYT----- 486 (1304)
T ss_pred -------Hhh--hhh-----------------hccCCCCccccccCCCCc--CCCcceEEecCCccccCC-chhh-----
Confidence 000 000 011134578999999995 899999999999988553 2211
Q ss_pred CCCCCccceeeeccccchhhHHHHHHHHHHHh----CCCCCHHHHHHHHHhccccCCCCCCccccCCCCCcCCCCCcccc
Q 003970 534 PSDGRSVKWNFQSGTSMSCPHVSGVVALIKSA----HPNWSPAAIRSALMTTAYTRDTSHDSILAGGSMKVSDPFDIGAG 609 (782)
Q Consensus 534 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~P~lsp~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G 609 (782)
-..-..|+|||||+|+++|.+|||++. +-.|||..||.+|++||.++++. .+|.||.|
T Consensus 487 -----lq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i-------------d~faqG~G 548 (1304)
T KOG1114|consen 487 -----LQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI-------------DSFAQGQG 548 (1304)
T ss_pred -----hhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc-------------chhccCcc
Confidence 115568999999999999999999664 67899999999999999987642 57899999
Q ss_pred ccCccccCC
Q 003970 610 HINPMKAMD 618 (782)
Q Consensus 610 ~vn~~~Al~ 618 (782)
++++++|.+
T Consensus 549 mlqVdkAyE 557 (1304)
T KOG1114|consen 549 MLQVDKAYE 557 (1304)
T ss_pred eeehhHHHH
Confidence 999999987
No 39
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.98 E-value=2.1e-32 Score=283.48 Aligned_cols=197 Identities=26% Similarity=0.260 Sum_probs=140.2
Q ss_pred CCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHH--hhcCCcEE
Q 003970 213 SARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDA--LHDGVDVI 290 (782)
Q Consensus 213 ~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a--~~~gvdVI 290 (782)
...|.++|||||||||||. .|++|+++|+..++.. ...+.+.++++|+ .+.+++||
T Consensus 32 ~~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~-------~~~~~~~~~i~~~~~~~~gv~VI 89 (247)
T cd07488 32 RNNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI-------KSNNGQWQECLEAQQNGNNVKII 89 (247)
T ss_pred CCCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC-------CCCCccHHHHHHHHHhcCCceEE
Confidence 3457899999999999987 3567999998765522 1223456777787 66799999
Q ss_pred EecccCCCCCCC-----CccChHHHHHHhhhcc-CceEEEecCCCCCCCC---Cc--ccCCCceEEecccccCcccceeE
Q 003970 291 SASFGESPPLRP-----FFASNADIGSFNAMQH-GVTVVFSGGNDGPEPS---LV--QNVAPWSICVAASSIDRTFPTEI 359 (782)
Q Consensus 291 n~SlG~~~~~~~-----~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~---~~--~~~ap~vitVgAs~~d~~~~~~~ 359 (782)
|||||.... .. ...+.+..++..+.++ |+++|+||||+|.... .+ +..++++|+|||++....
T Consensus 90 NmS~G~~~~-~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~----- 163 (247)
T cd07488 90 NHSYGEGLK-RDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD----- 163 (247)
T ss_pred EeCCccCCC-CCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC-----
Confidence 999998742 11 1223455666666555 9999999999997532 22 233688999999642210
Q ss_pred EeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecC
Q 003970 360 VVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEP 439 (782)
Q Consensus 360 ~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~ 439 (782)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcccceeecCce
Q 003970 440 MTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILKPDITAPGIG 519 (782)
Q Consensus 440 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~ 519 (782)
....+.||+++-....++..||||+|||++
T Consensus 164 --------------------------------------------------~~~~s~~sn~~~~~~~~~~~~~di~APG~~ 193 (247)
T cd07488 164 --------------------------------------------------RFFASDVSNAGSEINSYGRRKVLIVAPGSN 193 (247)
T ss_pred --------------------------------------------------cceecccccccCCCCCCCCceeEEEEeeee
Confidence 011245565432221467889999999999
Q ss_pred EEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCH------HHHHHHHHhcc
Q 003970 520 VLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSP------AAIRSALMTTA 582 (782)
Q Consensus 520 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp------~~Ik~~L~~TA 582 (782)
|++ +.+ .|..++|||||||||||++|||++++|.+.+ -++|.+|+.|+
T Consensus 194 i~s--~~~-------------~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~~ 247 (247)
T cd07488 194 YNL--PDG-------------KDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSSV 247 (247)
T ss_pred EEC--CCC-------------ceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhccC
Confidence 998 332 6889999999999999999999999877664 55677776653
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.97 E-value=1.4e-30 Score=269.90 Aligned_cols=197 Identities=37% Similarity=0.446 Sum_probs=157.9
Q ss_pred CCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHh-hcCCcEEE
Q 003970 213 SARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDAL-HDGVDVIS 291 (782)
Q Consensus 213 ~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~-~~gvdVIn 291 (782)
...+..+||||||++|++...... ..|+||+++|+.+|+..... ......+++++++++ ..+++|||
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~~---------~~g~a~~a~i~~~~~~~~~~---~~~~~~~~~ai~~~~~~~~~~iin 106 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNGG---------GVGVAPGAKLIPVKVLDGDG---SGSSSDIAAAIDYAAADQGADVIN 106 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCCC---------CEEeCCCCEEEEEEEecCCC---CcCHHHHHHHHHHHHhccCCCEEE
Confidence 445688999999999999864322 27999999999999988765 467889999999999 89999999
Q ss_pred ecccCCCCCCCCccChHHHHHHhhhcc-CceEEEecCCCCCCCC---CcccCCCceEEecccccCcccceeEEeCCccEE
Q 003970 292 ASFGESPPLRPFFASNADIGSFNAMQH-GVTVVFSGGNDGPEPS---LVQNVAPWSICVAASSIDRTFPTEIVVNSDFSI 367 (782)
Q Consensus 292 ~SlG~~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~---~~~~~ap~vitVgAs~~d~~~~~~~~~~~~~~~ 367 (782)
+|||... ......+...+.++.++ |+++|+||||.+.... ..+...+++|+||+++.+.
T Consensus 107 ~S~g~~~---~~~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~-------------- 169 (241)
T cd00306 107 LSLGGPG---SPPSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG-------------- 169 (241)
T ss_pred eCCCCCC---CCCCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC--------------
Confidence 9999884 11345566677777777 9999999999997665 3555679999999865321
Q ss_pred EeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCcccccc
Q 003970 368 VGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTELIAEV 447 (782)
Q Consensus 368 ~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~ 447 (782)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCcc-ccccCCCCCCCCCCCcccceeecCceEEeecCC
Q 003970 448 DIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTV-AYFSSRGPSSISPDILKPDITAPGIGVLAAWPP 526 (782)
Q Consensus 448 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~ 526 (782)
.. ..++++|+ |||+.|||.++......
T Consensus 170 --------------------------------------------~~~~~~~~~~~--------~~~~~apg~~~~~~~~~ 197 (241)
T cd00306 170 --------------------------------------------TPASPSSNGGA--------GVDIAAPGGDILSSPTT 197 (241)
T ss_pred --------------------------------------------CccCCcCCCCC--------CceEEeCcCCccCcccC
Confidence 11 13444444 58999999998875111
Q ss_pred CCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 003970 527 NTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTT 581 (782)
Q Consensus 527 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~T 581 (782)
....+..++|||||||+|||++||++|++|++++.++|++|++|
T Consensus 198 -----------~~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 198 -----------GGGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred -----------CCCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 12388999999999999999999999999999999999999875
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=9.1e-23 Score=234.57 Aligned_cols=253 Identities=32% Similarity=0.412 Sum_probs=189.3
Q ss_pred CCCccCCC--CCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEeccccccccc
Q 003970 123 TGEVTPVQ--LAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEY 200 (782)
Q Consensus 123 ~~~~~~~~--~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~ 200 (782)
.....|.. +.+|+|++|+|||+||+..||+|.+..... ..|.+.
T Consensus 128 ~~~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~~-----------------------------~~~~~~----- 173 (508)
T COG1404 128 SVGALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVAG-----------------------------GDFVDG----- 173 (508)
T ss_pred ccccccccccCCCCCCeEEEEeccCCCCCChhhhcccccc-----------------------------cccccC-----
Confidence 34567777 899999999999999999999997653000 011110
Q ss_pred CCCCCCCCCCCC-CCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHH
Q 003970 201 GPLNASTNREYR-SARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAF 279 (782)
Q Consensus 201 ~~~~~~~~~~~~-~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai 279 (782)
... ...|..+|||||++++++.... ......|+||+++++.+|++.... +....++++++|
T Consensus 174 ---------~~~~~~~d~~~hGt~vag~ia~~~~~-------~~~~~~g~a~~~~~~~~~~~~~~~--g~~~~~~~~~~i 235 (508)
T COG1404 174 ---------DPEPPFLDDNGHGTHVAGTIAAVIFD-------NGAGVAGVAPGAKLLLVKVLGSGG--GSGELSDVAEGI 235 (508)
T ss_pred ---------CCCCCCCCCCCCcceeeeeeeeeccc-------CCCccccccCCCcEEEEEeccCCC--CcccHHHHHHHH
Confidence 011 2468899999999999984211 112358999999999999998763 157788889999
Q ss_pred HHHhhcC--CcEEEecccCCCCCCCCccChHHHHHHhhhccC-ceEEEecCCCCCCCCC----cccCC--CceEEecccc
Q 003970 280 DDALHDG--VDVISASFGESPPLRPFFASNADIGSFNAMQHG-VTVVFSGGNDGPEPSL----VQNVA--PWSICVAASS 350 (782)
Q Consensus 280 ~~a~~~g--vdVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~G~~~~~----~~~~a--p~vitVgAs~ 350 (782)
+++++.+ +++||||+|... .......+..++..++..| +++|+++||.|..... .+... +.+++|++..
T Consensus 236 ~~~~~~~~~~~~in~s~g~~~--~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~ 313 (508)
T COG1404 236 EGAANLGGPADVINLSLGGSL--SDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALD 313 (508)
T ss_pred HHHHhcCCCCcEEEecCCCCc--cccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCC
Confidence 9999999 999999999851 2234456667777777777 9999999999866421 11111 3566666632
Q ss_pred cCcccceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcC
Q 003970 351 IDRTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKAN 430 (782)
Q Consensus 351 ~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~G 430 (782)
.
T Consensus 314 ~------------------------------------------------------------------------------- 314 (508)
T COG1404 314 L------------------------------------------------------------------------------- 314 (508)
T ss_pred C-------------------------------------------------------------------------------
Confidence 1
Q ss_pred ceEEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCCCCcc
Q 003970 431 ASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISPDILK 510 (782)
Q Consensus 431 a~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~K 510 (782)
.+.++.||++|+.. .
T Consensus 315 -----------------------------------------------------------~~~~~~~s~~g~~~------~ 329 (508)
T COG1404 315 -----------------------------------------------------------SDTVASFSNDGSPT------G 329 (508)
T ss_pred -----------------------------------------------------------CCccccccccCCCC------C
Confidence 24568899999751 2
Q ss_pred cceeecCceEEe-----ecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCC-CCCHHHHHHHHHhcccc
Q 003970 511 PDITAPGIGVLA-----AWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHP-NWSPAAIRSALMTTAYT 584 (782)
Q Consensus 511 PDI~APG~~I~s-----a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P-~lsp~~Ik~~L~~TA~~ 584 (782)
.+++|||.+|.+ .+++.. ..|..++||||++|||+|++||+++.+| .+++.+++..+..++..
T Consensus 330 ~~~~apg~~i~~~~~~~~~~~~~-----------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~ 398 (508)
T COG1404 330 VDIAAPGVNILSLSAVNTLPGDG-----------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGL 398 (508)
T ss_pred cceeCCCccccccccceeeeCCc-----------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhcccc
Confidence 499999999988 444431 1499999999999999999999999999 89999999998888873
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=7e-22 Score=201.93 Aligned_cols=299 Identities=17% Similarity=0.193 Sum_probs=182.5
Q ss_pred CCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCC
Q 003970 123 TGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGP 202 (782)
Q Consensus 123 ~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~ 202 (782)
++..+|..|++|++|+++|+|.||||-|||++.+- ++ ...++|..+.
T Consensus 149 nv~~awa~g~tgknvttaimddgvdymhpdlk~ny-------------------na--------easydfssnd------ 195 (629)
T KOG3526|consen 149 NVAEAWALGYTGKNVTTAIMDDGVDYMHPDLKSNY-------------------NA--------EASYDFSSND------ 195 (629)
T ss_pred cHHHHHhhcccCCCceEEeecCCchhcCcchhccc-------------------Cc--------eeecccccCC------
Confidence 67889999999999999999999999999996331 10 1122232221
Q ss_pred CCCCCCCCCCCCC---C-CCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHH
Q 003970 203 LNASTNREYRSAR---D-FLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAA 278 (782)
Q Consensus 203 ~~~~~~~~~~~~~---D-~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~a 278 (782)
+++.|+ | .+.|||.|||-+++...++. +| .|||.+.++..+|+++ ..+..|+++|
T Consensus 196 -------pfpyprytddwfnshgtrcagev~aardngi--cg------vgvaydskvagirmld------qpymtdliea 254 (629)
T KOG3526|consen 196 -------PFPYPRYTDDWFNSHGTRCAGEVVAARDNGI--CG------VGVAYDSKVAGIRMLD------QPYMTDLIEA 254 (629)
T ss_pred -------CCCCCcccchhhhccCccccceeeeeccCCc--ee------eeeeeccccceeeecC------Cchhhhhhhh
Confidence 112222 2 58999999999888776544 33 6999999999999997 3667777776
Q ss_pred HHHHhh-cCCcEEEecccCCCCCCCCccC---hHHHHHHhhh-----ccCceEEEecCCCCCCCCCcc---cCCCceEEe
Q 003970 279 FDDALH-DGVDVISASFGESPPLRPFFAS---NADIGSFNAM-----QHGVTVVFSGGNDGPEPSLVQ---NVAPWSICV 346 (782)
Q Consensus 279 i~~a~~-~gvdVIn~SlG~~~~~~~~~~~---~~~~a~~~a~-----~~Gi~vV~AAGN~G~~~~~~~---~~ap~vitV 346 (782)
-..--+ ..++|.+-|||.... ....+. ....|+.+-+ ..|-+.|.|.|..|.+...-. ..+-|.|++
T Consensus 255 nsmghep~kihiysaswgptdd-gktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisi 333 (629)
T KOG3526|consen 255 NSMGHEPSKIHIYSASWGPTDD-GKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISI 333 (629)
T ss_pred cccCCCCceEEEEecccCcCCC-CcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEe
Confidence 433222 356899999998742 111222 2222333322 356789999999885422111 123466666
Q ss_pred cccccCcccceeEEeCCccEEEeeeeecccceeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHH
Q 003970 347 AASSIDRTFPTEIVVNSDFSIVGESFISTEVKAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAA 426 (782)
Q Consensus 347 gAs~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~ 426 (782)
-+.-.|.+ ++..+..|.
T Consensus 334 nsaindg~-------------------------------nahydescs-------------------------------- 350 (629)
T KOG3526|consen 334 NSAINDGE-------------------------------NAHYDESCS-------------------------------- 350 (629)
T ss_pred ehhhcCCc-------------------------------cccccchhh--------------------------------
Confidence 54221110 000111121
Q ss_pred HHcCceEEEEecCCCccccccccccEEEEehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCCCCCC
Q 003970 427 KKANASGLIFAEPMTELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPSSISP 506 (782)
Q Consensus 427 ~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~ 506 (782)
....+.||+-|.++
T Consensus 351 ---------------------------------------------------------------stlastfsng~rnp--- 364 (629)
T KOG3526|consen 351 ---------------------------------------------------------------STLASTFSNGGRNP--- 364 (629)
T ss_pred ---------------------------------------------------------------HHHHHHhhcCCcCC---
Confidence 11235677766542
Q ss_pred CCcccceeecCceEEeecCCCCCCCCCCCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccCC
Q 003970 507 DILKPDITAPGIGVLAAWPPNTPPTLLPSDGRSVKWNFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSALMTTAYTRD 586 (782)
Q Consensus 507 ~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~L~~TA~~~~ 586 (782)
+- |+. .+ +-+..+....||||.|+|-.||+.||.++++|.|+..+++.+-.-|.++..
T Consensus 365 -----et---gva--tt------------dlyg~ct~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskrns 422 (629)
T KOG3526|consen 365 -----ET---GVA--TT------------DLYGRCTRSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNS 422 (629)
T ss_pred -----Cc---cee--ee------------ccccceecccCCccccCccccceeeeeeccCCCcchhhhhheeeeecccch
Confidence 21 111 00 111226678899999999999999999999999999999999888877632
Q ss_pred CC-C-CccccC-CCCCcCCCCCccccccCccccCCCceeecCCc
Q 003970 587 TS-H-DSILAG-GSMKVSDPFDIGAGHINPMKAMDPGLIYDLKP 627 (782)
Q Consensus 587 ~~-g-~~~~~~-~~~~~~~~~~~G~G~vn~~~Al~~glv~d~~~ 627 (782)
-- + ..+... .....--+.-||+|.+|+.+-+.....+...+
T Consensus 423 lfd~~~rf~w~mngvglefnhlfgfgvldagamv~lak~wktvp 466 (629)
T KOG3526|consen 423 LFDGRCRFEWQMNGVGLEFNHLFGFGVLDAGAMVMLAKAWKTVP 466 (629)
T ss_pred hhcccceEEEeccccceeeecccccccccHHHHHHHHHHhccCC
Confidence 11 1 011110 11122244569999999877665444444443
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.70 E-value=9.2e-17 Score=176.72 Aligned_cols=103 Identities=25% Similarity=0.263 Sum_probs=79.2
Q ss_pred cceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhc---CCcEEEecccCCCCC-CCCccChHHHHHHhhhccC
Q 003970 244 GIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHD---GVDVISASFGESPPL-RPFFASNADIGSFNAMQHG 319 (782)
Q Consensus 244 g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~---gvdVIn~SlG~~~~~-~~~~~~~~~~a~~~a~~~G 319 (782)
..+.||||+|+|+.|++++.. ...++.++.+++.+ +++|||+|||..... ...+...+..++.+|..+|
T Consensus 81 ~~~~gvAP~a~i~~~~~~~~~-------~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~G 153 (361)
T cd04056 81 EYAGAIAPGANITLYFAPGTV-------TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQG 153 (361)
T ss_pred HHHHhccCCCeEEEEEECCcC-------ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCC
Confidence 356899999999999997632 35677888888887 999999999987410 0012345667778888999
Q ss_pred ceEEEecCCCCCCCCC-----------cccCCCceEEecccccCc
Q 003970 320 VTVVFSGGNDGPEPSL-----------VQNVAPWSICVAASSIDR 353 (782)
Q Consensus 320 i~vV~AAGN~G~~~~~-----------~~~~ap~vitVgAs~~d~ 353 (782)
|+||+|+||+|..... .+...|||++||+++...
T Consensus 154 itvvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 154 ITVLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred eEEEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 9999999999976532 344579999999987654
No 44
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.23 E-value=9.2e-11 Score=109.38 Aligned_cols=117 Identities=23% Similarity=0.391 Sum_probs=94.6
Q ss_pred EEeCCccEEEeeeeecccc-eeeEEEccc---cccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEE
Q 003970 359 IVVNSDFSIVGESFISTEV-KAKLVEAFT---YFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGL 434 (782)
Q Consensus 359 ~~~~~~~~~~g~~~~~~~~-~~~lv~~~~---~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~ 434 (782)
++++|++.+.|+++++... .+++++... ......|.+......+++|||++|+++.| ..+.+|..+++++||.|+
T Consensus 2 i~LGng~~i~G~sl~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~-~~~~~k~~~~~~~GA~gv 80 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNLKTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRGGN-TSRVAKGDAVKAAGGAGM 80 (126)
T ss_pred EEeCCCCEEEEEEccCCCCCccceEeccCcCCCCccccCCCCCCChhhccccEEEEeCCCC-ccHHHHHHHHHHcCCcEE
Confidence 6789999999999998775 578876333 12447899888888999999999999987 248899999999999999
Q ss_pred EEecCCC---ccccccccccEEEEehhhHHHHHHHHhcCCCCcEEE
Q 003970 435 IFAEPMT---ELIAEVDIIPTVRIDIAQGTQLRDYLAQFPRLPIVQ 477 (782)
Q Consensus 435 i~~n~~~---~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~ 477 (782)
|++|+.. ........+|++.|+.++|..|++|++ ++.+++++
T Consensus 81 I~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~-~~~~~~~~ 125 (126)
T cd02120 81 ILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYIN-STSNPTAT 125 (126)
T ss_pred EEEecCCCCceecccccccceEEECHHHHHHHHHHHH-cCCCccee
Confidence 9999865 222234689999999999999999999 55555443
No 45
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.21 E-value=9e-11 Score=111.86 Aligned_cols=110 Identities=30% Similarity=0.316 Sum_probs=87.3
Q ss_pred eeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCc---cc-cccccccEEE
Q 003970 379 AKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTE---LI-AEVDIIPTVR 454 (782)
Q Consensus 379 ~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~---~~-~~~~~~p~~~ 454 (782)
.++++.+. |...++...+++|||+||+|+.|. +.+|..+++++||.++|++|+... .. .....+|++.
T Consensus 28 ~~lv~~g~------g~~~d~~~~dv~GkIvL~~rg~c~--~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP~v~ 99 (143)
T cd02133 28 YELVDAGL------GTPEDFEGKDVKGKIALIQRGEIT--FVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVF 99 (143)
T ss_pred EEEEEccC------CchhccCCCCccceEEEEECCCCC--HHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEeEEE
Confidence 67777654 555566677899999999999875 999999999999999999998751 11 1135789999
Q ss_pred EehhhHHHHHHHHhcCCCCcEEEEccCccccCCCCCCccccccCCCCC
Q 003970 455 IDIAQGTQLRDYLAQFPRLPIVQLKPSKTSIGKVPAPTVAYFSSRGPS 502 (782)
Q Consensus 455 i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~ 502 (782)
|+..+|..|.+|++ + .++|.+..+.. ..+++.++.||||||+
T Consensus 100 Is~~dG~~L~~~l~-~----~~~i~~~~~~~-~~~~p~va~fSsrgp~ 141 (143)
T cd02133 100 ISKEDGEALKAALE-S----SKKLTFNTKKE-KATNPDLADFSSRGPW 141 (143)
T ss_pred ecHHHHHHHHHHHh-C----CCeEEEEeccc-cccCCccccccCcCCC
Confidence 99999999999998 4 45555554444 4567889999999997
No 46
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.87 E-value=4.9e-09 Score=89.76 Aligned_cols=78 Identities=31% Similarity=0.434 Sum_probs=55.6
Q ss_pred eEEEEeCCCCCCCCchhhHHHHHHHHHHhCCc----hhhccceEEEeeeeeeeEEEEeCHHHHHHHhcCcCeEEEEecce
Q 003970 29 VYIVYLGHNRHCDPNLISKSHLQLLSSVFASE----EDAKRSLLYGYKYSFSGFSAKLNSSQAASLAEMEEVISIFESQV 104 (782)
Q Consensus 29 ~yIV~l~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~i~~~y~~~~ng~s~~l~~~~~~~L~~~p~V~~V~~~~~ 104 (782)
+|||.|++... .......|.+++.+++.+. .....++.+.|+..||||+++++++++++|+++|+|++|+||+.
T Consensus 1 ~YIV~~k~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~ 78 (82)
T PF05922_consen 1 RYIVVFKDDAS--AASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQV 78 (82)
T ss_dssp EEEEEE-TTST--HHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECE
T ss_pred CEEEEECCCCC--cchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCce
Confidence 69999998732 2223455666666443321 23456799999999999999999999999999999999999999
Q ss_pred eecc
Q 003970 105 LKLH 108 (782)
Q Consensus 105 ~~~~ 108 (782)
++++
T Consensus 79 v~l~ 82 (82)
T PF05922_consen 79 VSLH 82 (82)
T ss_dssp EEE-
T ss_pred EecC
Confidence 8764
No 47
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.79 E-value=1.7e-08 Score=90.12 Aligned_cols=87 Identities=28% Similarity=0.342 Sum_probs=71.2
Q ss_pred eeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCC-------cccccccccc
Q 003970 379 AKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMT-------ELIAEVDIIP 451 (782)
Q Consensus 379 ~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~-------~~~~~~~~~p 451 (782)
.|||..........|.+......+++|||+||+||.|. |.+|..+++++||.|+|++|... ........+|
T Consensus 8 ~~lV~~~~~~~~~~~~~~~~~~~~~~gkIvlv~rg~~~--~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP 85 (101)
T PF02225_consen 8 GPLVPAGNGIDEGDCCPSDYNGSDVKGKIVLVERGSCS--FDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIP 85 (101)
T ss_dssp EEEEEETTEEECCHHHHHHTSTSTCTTSEEEEESTSSC--HHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSE
T ss_pred EEEEEecCCCCcccccccccCCccccceEEEEecCCCC--HHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEE
Confidence 56775544445667888888999999999999999996 99999999999999999999211 3445668999
Q ss_pred EEEEehhhHHHHHHHH
Q 003970 452 TVRIDIAQGTQLRDYL 467 (782)
Q Consensus 452 ~~~i~~~~g~~l~~~~ 467 (782)
+++|+..+|+.|++|+
T Consensus 86 ~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 86 VVFISYEDGEALLAYI 101 (101)
T ss_dssp EEEE-HHHHHHHHHHH
T ss_pred EEEeCHHHHhhhhccC
Confidence 9999999999999986
No 48
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.67 E-value=1.7e-07 Score=86.73 Aligned_cols=90 Identities=22% Similarity=0.166 Sum_probs=72.2
Q ss_pred eeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCC------cccc--ccccc
Q 003970 379 AKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMT------ELIA--EVDII 450 (782)
Q Consensus 379 ~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~------~~~~--~~~~~ 450 (782)
.++++... .....|.+..+...+++|||+||+|+.|. |.+|..+++++||.++|++|+.. .+.. ....+
T Consensus 19 ~~lv~~~~-~~~~gC~~~~~~~~~~~GkIvLv~rg~c~--f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~i 95 (122)
T cd04816 19 APLVPLDP-ERPAGCDASDYDGLDVKGAIVLVDRGGCP--FADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKV 95 (122)
T ss_pred EEEEEcCC-CCccCCCccccCCCCcCCeEEEEECCCCC--HHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCee
Confidence 45555332 22478998888888999999999999987 99999999999999999998765 1111 34579
Q ss_pred cEEEEehhhHHHHHHHHhcCCC
Q 003970 451 PTVRIDIAQGTQLRDYLAQFPR 472 (782)
Q Consensus 451 p~~~i~~~~g~~l~~~~~~~~~ 472 (782)
|.++|+..+|+.|++++. .+.
T Consensus 96 P~~~Is~~~G~~l~~~l~-~g~ 116 (122)
T cd04816 96 PVGVITKAAGAALRRRLG-AGE 116 (122)
T ss_pred eEEEEcHHHHHHHHHHHc-CCC
Confidence 999999999999999998 444
No 49
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.64 E-value=1.7e-07 Score=85.24 Aligned_cols=85 Identities=14% Similarity=0.116 Sum_probs=71.0
Q ss_pred eeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCc--c---c--ccccccc
Q 003970 379 AKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTE--L---I--AEVDIIP 451 (782)
Q Consensus 379 ~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~--~---~--~~~~~~p 451 (782)
+|++.... ...|...++.+.+++|||+|++||.|. |.+|..+++++||.++||+|+... . . .....||
T Consensus 22 ~~~~~~~~---~~gC~~~~~~~~~l~gkIaLV~RG~Cs--F~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP 96 (120)
T cd02129 22 LPLRNLTS---SVLCSASDVPPGGLKGKAVVVMRGNCT--FYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIP 96 (120)
T ss_pred eeeecCCC---cCCCCccccCccccCCeEEEEECCCcC--HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCccc
Confidence 55555433 478999888888999999999999996 999999999999999999998752 1 1 1346789
Q ss_pred EEEEehhhHHHHHHHHh
Q 003970 452 TVRIDIAQGTQLRDYLA 468 (782)
Q Consensus 452 ~~~i~~~~g~~l~~~~~ 468 (782)
+++|+..+|+.|.+.+.
T Consensus 97 ~v~Is~~dG~~i~~~l~ 113 (120)
T cd02129 97 VALLSYKDMLDIQQTFG 113 (120)
T ss_pred EEEEeHHHHHHHHHHhc
Confidence 99999999999998877
No 50
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.60 E-value=4.2e-07 Score=85.52 Aligned_cols=88 Identities=14% Similarity=0.048 Sum_probs=71.4
Q ss_pred cccCCccccCCC--CCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCC-c-----cc-cccccccEEEEeh
Q 003970 387 YFADGICKCENW--MGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMT-E-----LI-AEVDIIPTVRIDI 457 (782)
Q Consensus 387 ~~~~~~c~~~~~--~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~-~-----~~-~~~~~~p~~~i~~ 457 (782)
......|.+... ++.++.|+|+|++||.|. |.+|..+++++||.++|++|+.. . +. .....+|.++|+.
T Consensus 41 ~~~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~--F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~ 118 (138)
T cd02122 41 PNDHYGCDPDTRFPIPPNGEPWIALIQRGNCT--FEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITN 118 (138)
T ss_pred CCCcCCCCCCccccCCccCCCeEEEEECCCCC--HHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcH
Confidence 334578998776 567899999999999986 99999999999999999999874 1 11 1234789999999
Q ss_pred hhHHHHHHHHhcCCCCcEEE
Q 003970 458 AQGTQLRDYLAQFPRLPIVQ 477 (782)
Q Consensus 458 ~~g~~l~~~~~~~~~~~~~~ 477 (782)
.+|+.|++++. ++.+.+++
T Consensus 119 ~~G~~l~~~l~-~G~~Vtv~ 137 (138)
T cd02122 119 PKGMEILELLE-RGISVTMV 137 (138)
T ss_pred HHHHHHHHHHH-cCCcEEEe
Confidence 99999999998 66555443
No 51
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.56 E-value=6.7e-07 Score=81.83 Aligned_cols=84 Identities=20% Similarity=0.139 Sum_probs=67.7
Q ss_pred CCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCc-------cc----cccccccEEEEehh
Q 003970 390 DGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTE-------LI----AEVDIIPTVRIDIA 458 (782)
Q Consensus 390 ~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~-------~~----~~~~~~p~~~i~~~ 458 (782)
...|.+... ..+++|||+|++||.|. |.+|..+++++||.++|++|+... +. .....||+++|+..
T Consensus 21 ~~gC~~~~~-~~~~~g~I~Lv~RG~C~--F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~ 97 (118)
T cd02127 21 LEACEELRN-IHDINGNIALIERGGCS--FLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGK 97 (118)
T ss_pred cccCCCCCC-ccccCCeEEEEECCCCC--HHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHH
Confidence 467986443 56799999999999986 999999999999999999997541 11 23458999999999
Q ss_pred hHHHHHHHHhcCCCCcEEE
Q 003970 459 QGTQLRDYLAQFPRLPIVQ 477 (782)
Q Consensus 459 ~g~~l~~~~~~~~~~~~~~ 477 (782)
+|+.|++.+. .+..+++.
T Consensus 98 dG~~L~~~l~-~g~~~~~~ 115 (118)
T cd02127 98 NGYMIRKTLE-RLGLPYAI 115 (118)
T ss_pred HHHHHHHHHH-cCCceEEe
Confidence 9999999998 55555443
No 52
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.50 E-value=1.5e-06 Score=80.40 Aligned_cols=89 Identities=20% Similarity=0.149 Sum_probs=69.6
Q ss_pred eeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCC-Cc----c--cccccccc
Q 003970 379 AKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPM-TE----L--IAEVDIIP 451 (782)
Q Consensus 379 ~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~-~~----~--~~~~~~~p 451 (782)
.++++.. ...|.+.++ +.+++|||+|++|+.|. |.+|..+++++||.++|++|+. .. . ......+|
T Consensus 24 g~lv~~~----~~gC~~~~~-~~~~~gkIvlv~rg~c~--f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip 96 (122)
T cd02130 24 GPLVVVP----NLGCDAADY-PASVAGNIALIERGECP--FGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVP 96 (122)
T ss_pred EEEEEeC----CCCCCcccC-CcCCCCEEEEEECCCCC--HHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEee
Confidence 4555543 357886655 35799999999999986 8999999999999999999987 31 1 11246799
Q ss_pred EEEEehhhHHHHHHHHhcCCCCcE
Q 003970 452 TVRIDIAQGTQLRDYLAQFPRLPI 475 (782)
Q Consensus 452 ~~~i~~~~g~~l~~~~~~~~~~~~ 475 (782)
.+.|+.++|+.|++.+. .+.+.+
T Consensus 97 ~v~Is~~~G~~L~~~l~-~g~~v~ 119 (122)
T cd02130 97 TVGISQEDGKALVAALA-NGGEVS 119 (122)
T ss_pred EEEecHHHHHHHHHHHh-cCCcEE
Confidence 99999999999999998 554443
No 53
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.45 E-value=1e-06 Score=81.00 Aligned_cols=80 Identities=23% Similarity=0.172 Sum_probs=65.6
Q ss_pred CCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCc--cc-----cccccccEEEEehhhHHH
Q 003970 390 DGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTE--LI-----AEVDIIPTVRIDIAQGTQ 462 (782)
Q Consensus 390 ~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~--~~-----~~~~~~p~~~i~~~~g~~ 462 (782)
...|.+... ..+++|||+||.|+.|. +.+|..+++++||.++|++|+... .. .....+|+++|+.++|..
T Consensus 27 ~~~C~~~~~-~~~v~GkIvL~~rg~c~--f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~ 103 (118)
T cd04818 27 TDGCTAFTN-AAAFAGKIALIDRGTCN--FTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDA 103 (118)
T ss_pred ccccCCCCc-CCCCCCEEEEEECCCCC--HHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHH
Confidence 467988776 34699999999999875 899999999999999999987652 11 123579999999999999
Q ss_pred HHHHHhcCCCC
Q 003970 463 LRDYLAQFPRL 473 (782)
Q Consensus 463 l~~~~~~~~~~ 473 (782)
|++|++ .+..
T Consensus 104 l~~~l~-~g~~ 113 (118)
T cd04818 104 LKAALA-AGGT 113 (118)
T ss_pred HHHHHh-cCCc
Confidence 999998 4443
No 54
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.43 E-value=1.8e-06 Score=80.04 Aligned_cols=82 Identities=20% Similarity=0.159 Sum_probs=64.8
Q ss_pred CCccccCCCC--CC----CCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCc-cc-------------ccccc
Q 003970 390 DGICKCENWM--GR----KATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTE-LI-------------AEVDI 449 (782)
Q Consensus 390 ~~~c~~~~~~--~~----~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~-~~-------------~~~~~ 449 (782)
...|.+.... +. ...++|+|++||+|. |.+|+.+++++||.++|++|+... +. .....
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~--F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~ 99 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCF--FTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKIT 99 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECCCcC--HHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCce
Confidence 4678866442 22 378899999999987 999999999999999999998651 11 12347
Q ss_pred ccEEEEehhhHHHHHHHHhcCCCCc
Q 003970 450 IPTVRIDIAQGTQLRDYLAQFPRLP 474 (782)
Q Consensus 450 ~p~~~i~~~~g~~l~~~~~~~~~~~ 474 (782)
+|+++|+..+|+.|++.+. .+...
T Consensus 100 IP~v~Is~~~G~~L~~~l~-~g~~V 123 (127)
T cd02125 100 IPSALITKAFGEKLKKAIS-NGEMV 123 (127)
T ss_pred EeEEEECHHHHHHHHHHHh-cCCeE
Confidence 9999999999999999998 55433
No 55
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.41 E-value=1.4e-06 Score=80.98 Aligned_cols=77 Identities=27% Similarity=0.237 Sum_probs=65.1
Q ss_pred CCccccCC--CCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCC----ccc-----cccccccEEEEehh
Q 003970 390 DGICKCEN--WMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMT----ELI-----AEVDIIPTVRIDIA 458 (782)
Q Consensus 390 ~~~c~~~~--~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~----~~~-----~~~~~~p~~~i~~~ 458 (782)
...|.+.. +...+++|||+||.|+.|. +.+|..+++++||.|+|++|+.. ... .....+|++.|+.+
T Consensus 30 ~~~C~~~~~~~~~~~~~GkIvl~~~g~~~--~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~ 107 (126)
T cd00538 30 LVGCGYGTTDDSGADVKGKIVLVRRGGCS--FSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYA 107 (126)
T ss_pred eEEEecCcccccCCCccceEEEEECCCcC--HHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHH
Confidence 34688776 6778899999999999875 99999999999999999998764 111 13467999999999
Q ss_pred hHHHHHHHHh
Q 003970 459 QGTQLRDYLA 468 (782)
Q Consensus 459 ~g~~l~~~~~ 468 (782)
+|..|++|+.
T Consensus 108 ~g~~l~~~~~ 117 (126)
T cd00538 108 DGEALLSLLE 117 (126)
T ss_pred HHHHHHHHHh
Confidence 9999999998
No 56
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.40 E-value=1.1e-06 Score=82.20 Aligned_cols=72 Identities=22% Similarity=0.254 Sum_probs=60.7
Q ss_pred CCCCCCCCceEEEEeeCCCC---ccHHHHHHHHHHcCceEEEEecCC--Cc-----cccc--cccccEEEEehhhHHHHH
Q 003970 397 NWMGRKATGRVVLCFSTMGS---VKTEEAEAAAKKANASGLIFAEPM--TE-----LIAE--VDIIPTVRIDIAQGTQLR 464 (782)
Q Consensus 397 ~~~~~~~~gkiv~~~~g~~~---~~~~~k~~~~~~~Ga~g~i~~n~~--~~-----~~~~--~~~~p~~~i~~~~g~~l~ 464 (782)
++...+++|||+|++||.|. ..|.+|..+++++||.++||||+. .. +... ..+||++.|++.+|+.|+
T Consensus 49 d~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~ 128 (139)
T cd04817 49 SYICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALL 128 (139)
T ss_pred cccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHH
Confidence 34556899999999999986 449999999999999999999997 32 1221 468999999999999999
Q ss_pred HHHh
Q 003970 465 DYLA 468 (782)
Q Consensus 465 ~~~~ 468 (782)
+.+.
T Consensus 129 ~~l~ 132 (139)
T cd04817 129 AALG 132 (139)
T ss_pred HHhc
Confidence 9887
No 57
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.39 E-value=1.7e-06 Score=80.44 Aligned_cols=76 Identities=17% Similarity=0.144 Sum_probs=63.1
Q ss_pred CCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCc----------cc-----cccccccEEE
Q 003970 390 DGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTE----------LI-----AEVDIIPTVR 454 (782)
Q Consensus 390 ~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~----------~~-----~~~~~~p~~~ 454 (782)
...|.+... +.+++|||+|++||.|. |.+|..+++++||.++|++|+... +. .....||+++
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~--f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~ 103 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCM--FVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVF 103 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCc--HHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEE
Confidence 367986654 55799999999999987 999999999999999999976431 11 1246899999
Q ss_pred EehhhHHHHHHHHh
Q 003970 455 IDIAQGTQLRDYLA 468 (782)
Q Consensus 455 i~~~~g~~l~~~~~ 468 (782)
|+..+|..|++++.
T Consensus 104 I~~~dG~~L~~~l~ 117 (126)
T cd02126 104 LFSKEGSKLLAAIK 117 (126)
T ss_pred EEHHHHHHHHHHHH
Confidence 99999999999998
No 58
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.38 E-value=1.8e-06 Score=81.72 Aligned_cols=78 Identities=22% Similarity=0.228 Sum_probs=64.5
Q ss_pred CCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCc---cc------cccccccEEEEehhhH
Q 003970 390 DGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTE---LI------AEVDIIPTVRIDIAQG 460 (782)
Q Consensus 390 ~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~---~~------~~~~~~p~~~i~~~~g 460 (782)
...|.+.. .+++|||+|++||.|. |.+|..+++++||.++|++|+... +. .....||+++|+..+|
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~--F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G 122 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECA--FTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAG 122 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCC--HHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHH
Confidence 46798754 4799999999999997 999999999999999999987651 11 1135899999999999
Q ss_pred HHHHHHHhcCCCC
Q 003970 461 TQLRDYLAQFPRL 473 (782)
Q Consensus 461 ~~l~~~~~~~~~~ 473 (782)
+.|++.+. .+..
T Consensus 123 ~~L~~~l~-~g~~ 134 (139)
T cd02132 123 DALNKSLD-QGKK 134 (139)
T ss_pred HHHHHHHH-cCCc
Confidence 99999998 5443
No 59
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.35 E-value=2e-06 Score=78.59 Aligned_cols=75 Identities=15% Similarity=0.176 Sum_probs=63.4
Q ss_pred CCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCc-----cc----cccccccEEEEehhhH
Q 003970 390 DGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTE-----LI----AEVDIIPTVRIDIAQG 460 (782)
Q Consensus 390 ~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~-----~~----~~~~~~p~~~i~~~~g 460 (782)
...|.+. +..+++|||+|++||+|. |.+|..+++++||.++|++|+... +. .....+|+++++..++
T Consensus 27 ~~gC~~~--~~~~l~gkIvLV~RG~Cs--F~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g 102 (117)
T cd04813 27 TDACSLQ--EHAEIDGKVALVLRGGCG--FLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSY 102 (117)
T ss_pred CCCCCCC--CcCCcCCeEEEEECCCCC--HHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHH
Confidence 4689766 567899999999999986 999999999999999999987641 11 2345899999999999
Q ss_pred HHHHHHHh
Q 003970 461 TQLRDYLA 468 (782)
Q Consensus 461 ~~l~~~~~ 468 (782)
+.|+.++.
T Consensus 103 ~~L~~l~~ 110 (117)
T cd04813 103 HLLSSLLP 110 (117)
T ss_pred HHHHHhcc
Confidence 99998876
No 60
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.34 E-value=2.7e-06 Score=79.13 Aligned_cols=81 Identities=19% Similarity=0.094 Sum_probs=63.9
Q ss_pred cCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCC----ccccccccccEEEEehhhHHHHH
Q 003970 389 ADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMT----ELIAEVDIIPTVRIDIAQGTQLR 464 (782)
Q Consensus 389 ~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~----~~~~~~~~~p~~~i~~~~g~~l~ 464 (782)
....|.+...+..+++|||+|++||.|. |.+|..+++++||.++||+|+.. ....+...+|.+.+ ..+|+.|+
T Consensus 40 ~~~gC~~~~~~~~~~~g~IaLv~rg~c~--f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~ 116 (129)
T cd02124 40 ADDACQPLPDDTPDLSGYIVLVRRGTCT--FATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWI 116 (129)
T ss_pred CcccCcCCCcccccccCeEEEEECCCCC--HHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHH
Confidence 3468987766656899999999999986 99999999999999999998865 12223344566666 99999999
Q ss_pred HHHhcCCCC
Q 003970 465 DYLAQFPRL 473 (782)
Q Consensus 465 ~~~~~~~~~ 473 (782)
+.+. .+..
T Consensus 117 ~~l~-~G~~ 124 (129)
T cd02124 117 DALA-AGSN 124 (129)
T ss_pred HHHh-cCCe
Confidence 9988 4443
No 61
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=3.6e-06 Score=93.98 Aligned_cols=159 Identities=18% Similarity=0.146 Sum_probs=98.7
Q ss_pred CCCccCCCCCCCCCcEEEEeccccCCCCCCCCCCCCCCCCCCCccceeeccCcCCCCcccCcceeeeEecccccccccCC
Q 003970 123 TGEVTPVQLAYGDDIVVGIFDTGVWPESESFQEEPSMSPIPSSWKGTCVRGEKFDPQKACNRKLIGARYYVKGFEEEYGP 202 (782)
Q Consensus 123 ~~~~~~~~~~~G~gV~VgVIDtGId~~Hp~f~d~~~~~~~~~~~~g~~~~g~~f~~~~~~n~kiig~~~~~~~~~~~~~~ 202 (782)
++...|..+++|+++.|+|.|.|+...||+..+.- .+ .+..++....+.
T Consensus 21 ~v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~~--~~-------------------------~~s~d~~~~~~~---- 69 (431)
T KOG3525|consen 21 NVQNAWCKGYTGTRVSVTILDDGLECSHPDLRNNY--DP-------------------------LGSYDVNRHDND---- 69 (431)
T ss_pred eeeeccccCCCCCceEEEEeeccccccCccccccc--Cc-------------------------ceeEeeecCCCC----
Confidence 57789999999999999999999999999986432 11 111111111100
Q ss_pred CCCCCCCCCCCCCCCCCCchhhhhhhccccccCCcccccCCcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHH
Q 003970 203 LNASTNREYRSARDFLGHGTHTASTAAGSIAKNAGFFGLGRGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDA 282 (782)
Q Consensus 203 ~~~~~~~~~~~~~D~~gHGTHVAgiaag~~~~~~~~~G~~~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a 282 (782)
...-.+......|||-|++-.+....+.. -..|+++++++..++++...- .+...+....
T Consensus 70 -----p~~~~~~~~~~~~g~~Ca~~~a~~~~~~~--------C~vg~~~~~~~~g~~~l~~~v-------~~~~~~~~~~ 129 (431)
T KOG3525|consen 70 -----PEPRCDGTNENKHGTRCAGCVAARANNLT--------CGVGVAYNATIGGIRMLAGCV-------SDAVEAPSLG 129 (431)
T ss_pred -----cccccCCCCccccCCCCCcccccccCCCc--------CCCCcccCccccceeeeeeec-------ccceeccccc
Confidence 01112233468999999999998853222 247999999999999986332 1333333222
Q ss_pred hh-cCCcEEEecccCCCCCCCC--ccChHHHHHHh-----hhccCceEEEecCCCCCC
Q 003970 283 LH-DGVDVISASFGESPPLRPF--FASNADIGSFN-----AMQHGVTVVFSGGNDGPE 332 (782)
Q Consensus 283 ~~-~gvdVIn~SlG~~~~~~~~--~~~~~~~a~~~-----a~~~Gi~vV~AAGN~G~~ 332 (782)
.. .-.++-..|||....+... .......+..+ ...+|-+.+++.||.|..
T Consensus 130 ~~~~~~di~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~ 187 (431)
T KOG3525|consen 130 FGPCHIDIYSCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTC 187 (431)
T ss_pred CCCCCceeecCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCcccc
Confidence 22 3468999999987420110 01112222222 236788999999998754
No 62
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.30 E-value=4e-06 Score=80.58 Aligned_cols=77 Identities=18% Similarity=0.123 Sum_probs=65.5
Q ss_pred CCccccCCCCC---CCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCC----cccc-----ccccccEEEEeh
Q 003970 390 DGICKCENWMG---RKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMT----ELIA-----EVDIIPTVRIDI 457 (782)
Q Consensus 390 ~~~c~~~~~~~---~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~----~~~~-----~~~~~p~~~i~~ 457 (782)
...|.+....+ .++.|+|+|++||.|. |.+|..+++++||.++|++|+.. .+.. ....||+++|+.
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~Ct--F~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~ 127 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCS--FETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGK 127 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCC--HHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeH
Confidence 46798776644 7899999999999986 99999999999999999999864 1111 246899999999
Q ss_pred hhHHHHHHHHh
Q 003970 458 AQGTQLRDYLA 468 (782)
Q Consensus 458 ~~g~~l~~~~~ 468 (782)
.+|+.|+.++.
T Consensus 128 ~dg~~L~~~l~ 138 (153)
T cd02123 128 STGEILKKYAS 138 (153)
T ss_pred HHHHHHHHHHh
Confidence 99999999998
No 63
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=2.1e-05 Score=94.47 Aligned_cols=99 Identities=18% Similarity=0.152 Sum_probs=59.4
Q ss_pred CcceeeecCCCeEEEEEeeeCCCCCCCCCHHHHHHHHHHHhhcCC-cEEEecccCCCC-CCCC--ccChHHHHHHhhhcc
Q 003970 243 RGIARGGAPRARLAVYKICWGKDSDGKCTEADILAAFDDALHDGV-DVISASFGESPP-LRPF--FASNADIGSFNAMQH 318 (782)
Q Consensus 243 ~g~~~GVAP~A~l~~~kv~~~~~~~~~~~~~~i~~ai~~a~~~gv-dVIn~SlG~~~~-~~~~--~~~~~~~a~~~a~~~ 318 (782)
-....-+||+|+|..+-.-. .....+..|+.+-...=+ -++-.||+.... ...+ .-+.+..-...|..+
T Consensus 285 VE~s~A~AP~A~I~lvvap~-------~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasae 357 (1174)
T COG4934 285 VEWSHAMAPKANIDLVVAPN-------PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAE 357 (1174)
T ss_pred hhhhhccCccCceEEEEcCC-------CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhcc
Confidence 33456789999999887721 233333344333332211 334456665421 0111 223344555678899
Q ss_pred CceEEEecCCCCCCCCC--------cccCCCceEEecc
Q 003970 319 GVTVVFSGGNDGPEPSL--------VQNVAPWSICVAA 348 (782)
Q Consensus 319 Gi~vV~AAGN~G~~~~~--------~~~~ap~vitVgA 348 (782)
||.+++|+|.+|....+ .+..+|++++||-
T Consensus 358 GITi~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 358 GITIFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred ceEEEEecccccccCCCcccceeecccCCCccEEeecC
Confidence 99999999999866543 2334799999997
No 64
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.06 E-value=7.4e-05 Score=68.01 Aligned_cols=88 Identities=22% Similarity=0.271 Sum_probs=59.7
Q ss_pred EEEeecCceEEEEEEEEecCCCCCeEEEEEEeC--------CCcc-----------EEEEEcceeEeccCCeEEEEEEEE
Q 003970 676 ITVSNLQSTMTIKRTVKNVGQKKNAIYFASVVK--------PGGV-----------EVVVWPRVLVFSWFKEEVSYYVSL 736 (782)
Q Consensus 676 ~~~~~~~~~~~~~rtvtnv~~~~~~ty~~~~~~--------p~g~-----------~v~v~p~~~~~~~~g~~~~~~v~~ 736 (782)
|++++.....+++.+|+|.|.. ..+|+++... ..|. .+...|.++++ ++|++++|+|++
T Consensus 1 i~L~d~~~~~~~~itl~N~~~~-~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti 78 (112)
T PF06280_consen 1 ISLKDTGNKFSFTITLHNYGDK-PVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTI 78 (112)
T ss_dssp EEEEEE-SEEEEEEEEEE-SSS--EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEE
T ss_pred CCccccCCceEEEEEEEECCCC-CEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEE
Confidence 3455555568889999999988 9999887651 1111 56777888888 789999999999
Q ss_pred Eecc---cCCCceEEEEEEEEcC-c-eEEEeEEE
Q 003970 737 KPLK---MSQGRFDFGQIVWSDG-F-HYVRSPLV 765 (782)
Q Consensus 737 ~~~~---~~~~~~~~G~~~~~~~-~-~~v~~P~~ 765 (782)
+.+. ...+.+++|+|.+++. . ..+++|++
T Consensus 79 ~~p~~~~~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 79 TPPSGLDASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp E--GGGHHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred EehhcCCcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 9853 2457889999999974 4 48999985
No 65
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=98.02 E-value=4.4e-05 Score=71.11 Aligned_cols=84 Identities=18% Similarity=0.183 Sum_probs=66.3
Q ss_pred eeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCC-ccc---------cccc
Q 003970 379 AKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMT-ELI---------AEVD 448 (782)
Q Consensus 379 ~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~-~~~---------~~~~ 448 (782)
.++|+.+. +.+.++...+++|||+++.++.+...+.+|..+++++||.++|++|+.. ... ....
T Consensus 25 ~~lV~~g~------G~~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~ 98 (127)
T cd04819 25 GEPVDAGY------GLPKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPS 98 (127)
T ss_pred EEEEEeCC------CCHHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCC
Confidence 67777654 2333444667999999999998844589999999999999999998765 111 2245
Q ss_pred cccEEEEehhhHHHHHHHHh
Q 003970 449 IIPTVRIDIAQGTQLRDYLA 468 (782)
Q Consensus 449 ~~p~~~i~~~~g~~l~~~~~ 468 (782)
.+|++.|+.+++..|.+.++
T Consensus 99 ~IP~v~Is~edg~~L~~~l~ 118 (127)
T cd04819 99 PIPAASVSGEDGLRLARVAE 118 (127)
T ss_pred CCCEEEEeHHHHHHHHHHHh
Confidence 79999999999999999988
No 66
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=97.19 E-value=0.0011 Score=64.86 Aligned_cols=67 Identities=25% Similarity=0.239 Sum_probs=55.4
Q ss_pred CCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCCc---c------------------------------cc-
Q 003970 400 GRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMTE---L------------------------------IA- 445 (782)
Q Consensus 400 ~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~~---~------------------------------~~- 445 (782)
..+++|||+|+++|.|. +.+|..+|+++||+|+|+|++... . ..
T Consensus 51 gv~v~GkIvLvr~G~~~--~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~ 128 (183)
T cd02128 51 GVSVNGSVVLVRAGKIS--FAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPS 128 (183)
T ss_pred CCCCCCeEEEEECCCCC--HHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcc
Confidence 45799999999999986 999999999999999999998420 0 00
Q ss_pred ---ccccccEEEEehhhHHHHHHHHh
Q 003970 446 ---EVDIIPTVRIDIAQGTQLRDYLA 468 (782)
Q Consensus 446 ---~~~~~p~~~i~~~~g~~l~~~~~ 468 (782)
.-..||+.-|+..++..|++.+.
T Consensus 129 ~~~~lP~IPs~PIS~~da~~lL~~l~ 154 (183)
T cd02128 129 QSSGLPNIPAQTISAAAAAKLLSKMG 154 (183)
T ss_pred cccCCCCCCEeccCHHHHHHHHHHcC
Confidence 11358899999999999999887
No 67
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=97.06 E-value=0.0016 Score=60.91 Aligned_cols=64 Identities=22% Similarity=0.190 Sum_probs=53.1
Q ss_pred eeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCC----------ccHHHHHHHHHHcCceEEEEecCCC
Q 003970 378 KAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGS----------VKTEEAEAAAKKANASGLIFAEPMT 441 (782)
Q Consensus 378 ~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~----------~~~~~k~~~~~~~Ga~g~i~~n~~~ 441 (782)
..++|+.+.......|...++...+++|||||+.++.|. ..+.+|..++.+.||.++|++++..
T Consensus 23 ~gelVfvGyG~~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 23 EAPLVFVGYGLVAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred eEeEEEecCCcCccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 367777776555567888888888999999999998873 2477999999999999999999853
No 68
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=96.98 E-value=0.002 Score=60.66 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=53.0
Q ss_pred eeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCc----------------cHHHHHHHHHHcCceEEEEecCCC
Q 003970 379 AKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSV----------------KTEEAEAAAKKANASGLIFAEPMT 441 (782)
Q Consensus 379 ~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~----------------~~~~k~~~~~~~Ga~g~i~~n~~~ 441 (782)
.|+|+.+.......|...++...+++||||++.++.|.. .+..|..+++++||.|+|++|+..
T Consensus 22 aelVfvGyGi~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~~ 100 (142)
T cd04814 22 APLVFVGYGIKAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHELA 100 (142)
T ss_pred eeeEEecCCcCCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCCC
Confidence 678877765455678888999999999999999998721 477899999999999999999864
No 69
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=96.96 E-value=0.0025 Score=59.96 Aligned_cols=71 Identities=18% Similarity=0.171 Sum_probs=55.0
Q ss_pred CCCCCCCceEEEEeeCCCC----ccHHHH-------HHHHHHcCceEEEEecCCC---------ccc--cccccccEEEE
Q 003970 398 WMGRKATGRVVLCFSTMGS----VKTEEA-------EAAAKKANASGLIFAEPMT---------ELI--AEVDIIPTVRI 455 (782)
Q Consensus 398 ~~~~~~~gkiv~~~~g~~~----~~~~~k-------~~~~~~~Ga~g~i~~n~~~---------~~~--~~~~~~p~~~i 455 (782)
+...+++|||+++.++.|. ..+..| ...++++||.++|++|... .+. .....+|++.|
T Consensus 33 ~~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~i 112 (134)
T cd04815 33 APAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAI 112 (134)
T ss_pred cchhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEe
Confidence 3456899999999999991 124444 7899999999999998531 111 22356999999
Q ss_pred ehhhHHHHHHHHh
Q 003970 456 DIAQGTQLRDYLA 468 (782)
Q Consensus 456 ~~~~g~~l~~~~~ 468 (782)
+.+++..|...+.
T Consensus 113 s~ed~~~L~r~l~ 125 (134)
T cd04815 113 SVEDADMLERLAA 125 (134)
T ss_pred chhcHHHHHHHHh
Confidence 9999999999888
No 70
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=96.85 E-value=0.0046 Score=58.90 Aligned_cols=88 Identities=18% Similarity=0.212 Sum_probs=61.6
Q ss_pred eeeEEEccccccCCccccCCCCCCCCCceEEEEeeCCC----------------CccHHHHHHHHHHcCceEEEEecCCC
Q 003970 378 KAKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMG----------------SVKTEEAEAAAKKANASGLIFAEPMT 441 (782)
Q Consensus 378 ~~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~----------------~~~~~~k~~~~~~~Ga~g~i~~n~~~ 441 (782)
..++|+.+.......|...++...+++|||||+.++.. .+.+..|..++.+.||.++|++|+..
T Consensus 21 tg~lVfvGyGi~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~ 100 (151)
T cd04822 21 TAPVVFAGYGITAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPN 100 (151)
T ss_pred eEeEEEecCCcCccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCc
Confidence 36778777655566788888888899999999988752 13578999999999999999999875
Q ss_pred cccccccccc------EEEEehhhHHHHHH
Q 003970 442 ELIAEVDIIP------TVRIDIAQGTQLRD 465 (782)
Q Consensus 442 ~~~~~~~~~p------~~~i~~~~g~~l~~ 465 (782)
.........| .+.++....+.+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (151)
T cd04822 101 SHSGDADRLPRFGGTAPQRVDIAAADPWFT 130 (151)
T ss_pred ccCcccccccccCccceEEechHHHHHHhh
Confidence 2212221122 45566555555444
No 71
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=95.64 E-value=0.032 Score=61.24 Aligned_cols=74 Identities=23% Similarity=0.197 Sum_probs=60.6
Q ss_pred CCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCC---------ccccccccccEEEEehhhHHHHHHHHhcC
Q 003970 400 GRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMT---------ELIAEVDIIPTVRIDIAQGTQLRDYLAQF 470 (782)
Q Consensus 400 ~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~---------~~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 470 (782)
..++++|+++..||.|. |.+|+..++++||.++++.|+.. .....+..||+++++.+++..+..-.. +
T Consensus 91 ~~kl~~~~~~v~RGnC~--Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~-~ 167 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCS--FTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTR-S 167 (541)
T ss_pred CccccceeEEEecccce--eehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhc-c
Confidence 45689999999999997 99999999999999999999943 233455799999999999999987655 4
Q ss_pred CCCcEE
Q 003970 471 PRLPIV 476 (782)
Q Consensus 471 ~~~~~~ 476 (782)
+++.++
T Consensus 168 ~~~V~~ 173 (541)
T KOG2442|consen 168 NDNVEL 173 (541)
T ss_pred CCeEEE
Confidence 444333
No 72
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=95.16 E-value=0.035 Score=56.42 Aligned_cols=55 Identities=24% Similarity=0.150 Sum_probs=43.9
Q ss_pred eeEEEccccccCCccccCCCC-----CCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCC
Q 003970 379 AKLVEAFTYFADGICKCENWM-----GRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMT 441 (782)
Q Consensus 379 ~~lv~~~~~~~~~~c~~~~~~-----~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~ 441 (782)
.++||.+ .|...+++ ..+++|||+|++++.+. +.+|..+|++.||.|+|++++..
T Consensus 47 g~lVyvn------yG~~~D~~~L~~~gvdv~GKIvLvr~G~~~--~~~Kv~~A~~~GA~gVIiy~Dp~ 106 (220)
T cd02121 47 AELVYAN------YGSPEDFEYLEDLGIDVKGKIVIARYGGIF--RGLKVKNAQLAGAVGVIIYSDPA 106 (220)
T ss_pred EEEEEcC------CCcHHHHHHHhhcCCCCCCeEEEEECCCcc--HHHHHHHHHHcCCEEEEEEeCch
Confidence 5667654 35544432 56899999999999875 78999999999999999999853
No 73
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=95.07 E-value=0.033 Score=52.50 Aligned_cols=38 Identities=11% Similarity=0.009 Sum_probs=35.4
Q ss_pred CCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCC
Q 003970 401 RKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPM 440 (782)
Q Consensus 401 ~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~ 440 (782)
-+++|||+|++.|... +..|.++|++.||.|+|||.+.
T Consensus 37 V~v~GkIvi~RyG~~~--RG~Kv~~A~~~GA~GviIYsDP 74 (153)
T cd02131 37 MNVTNQIALLKLGQAP--LLYKLSLLEEAGFGGVLLYVDP 74 (153)
T ss_pred CCccceEEEEeccCcc--hHHHHHHHHHCCCeEEEEecCh
Confidence 5799999999999875 9999999999999999999985
No 74
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=94.92 E-value=0.74 Score=40.71 Aligned_cols=82 Identities=18% Similarity=0.031 Sum_probs=59.3
Q ss_pred ceEEEEEEEEecCCCCCeEEEEEEeCCCccEEEEEcceeEeccCCeEEEEEEEEEecccCCCceEEEEEEEEcCceEEEe
Q 003970 683 STMTIKRTVKNVGQKKNAIYFASVVKPGGVEVVVWPRVLVFSWFKEEVSYYVSLKPLKMSQGRFDFGQIVWSDGFHYVRS 762 (782)
Q Consensus 683 ~~~~~~rtvtnv~~~~~~ty~~~~~~p~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~~~~~~~~~~v~~ 762 (782)
...+.+.+|+|.+.. +..|++.......-.++++|..-.+ .+|++.++.|++.+.. .. +.+.+.|...-....+.+
T Consensus 20 ~~~~~~v~l~N~s~~-p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~-~~-g~~~~~l~i~~e~~~~~i 95 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSI-PARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPTK-PL-GDYEGSLVITTEGGSFEI 95 (102)
T ss_pred CEEEEEEEEEECCCC-CEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeCC-CC-ceEEEEEEEEECCeEEEE
Confidence 355666778999988 9999987654234457777777666 7899999999999532 33 335788888766677888
Q ss_pred EEEEEE
Q 003970 763 PLVVFV 768 (782)
Q Consensus 763 P~~~~~ 768 (782)
|+-...
T Consensus 96 ~v~a~~ 101 (102)
T PF14874_consen 96 PVKAEV 101 (102)
T ss_pred EEEEEE
Confidence 876543
No 75
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=93.42 E-value=0.31 Score=40.95 Aligned_cols=64 Identities=22% Similarity=0.165 Sum_probs=38.7
Q ss_pred ceEEEEEEEEecCCCCCeEEEEEEeCCCccEEEEEcceeEeccCCeEEEEEEEEEecc-cCCCce
Q 003970 683 STMTIKRTVKNVGQKKNAIYFASVVKPGGVEVVVWPRVLVFSWFKEEVSYYVSLKPLK-MSQGRF 746 (782)
Q Consensus 683 ~~~~~~rtvtnv~~~~~~ty~~~~~~p~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~-~~~~~~ 746 (782)
...+++.+|+|.|...-...++++..|.|-.+...|..+.--++|++++++++|+++. ...+.|
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G~y 69 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPADAAPGTY 69 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--SEEE
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCCCCCceE
Confidence 4678999999998652345888888999999888888775337899999999999863 333444
No 76
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.00 E-value=0.36 Score=52.00 Aligned_cols=76 Identities=17% Similarity=0.100 Sum_probs=60.7
Q ss_pred CccccCCC---CCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCC-------ccccccccccEEEEehhhH
Q 003970 391 GICKCENW---MGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMT-------ELIAEVDIIPTVRIDIAQG 460 (782)
Q Consensus 391 ~~c~~~~~---~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~-------~~~~~~~~~p~~~i~~~~g 460 (782)
++|.+... ........++++.||+|. |.+|..+|+++|..++|+||+.. ........++.++++...|
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~Rg~Cs--Fe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~g 140 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRRGGCS--FEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSG 140 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEccCCc--hHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehH
Confidence 45665433 134566789999999986 99999999999999999999765 1234557889999999999
Q ss_pred HHHHHHHh
Q 003970 461 TQLRDYLA 468 (782)
Q Consensus 461 ~~l~~~~~ 468 (782)
+.+.+|..
T Consensus 141 e~l~~~~~ 148 (348)
T KOG4628|consen 141 ELLSSYAG 148 (348)
T ss_pred HHHHHhhc
Confidence 99998866
No 77
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=90.92 E-value=0.52 Score=45.38 Aligned_cols=62 Identities=13% Similarity=0.113 Sum_probs=43.0
Q ss_pred eeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCc-----------------cHHHHHHHHHHcCceEEEEecCC
Q 003970 379 AKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSV-----------------KTEEAEAAAKKANASGLIFAEPM 440 (782)
Q Consensus 379 ~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~-----------------~~~~k~~~~~~~Ga~g~i~~n~~ 440 (782)
.|+|+.+-.-....-...++...|++||||++.+++... ....|...+.+.||.|+|+.++.
T Consensus 24 ~elVFvGyGi~ape~~~dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~ 102 (157)
T cd04821 24 SPLVFVGYGIVAPEYGWDDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHET 102 (157)
T ss_pred CCEEEeccCccCcccCcccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCC
Confidence 456665542222222334667789999999999776521 23469999999999999999764
No 78
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=89.24 E-value=0.49 Score=44.34 Aligned_cols=84 Identities=24% Similarity=0.155 Sum_probs=60.8
Q ss_pred eeEEEccccccCCccccCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHcCceEEEEecCCC---------ccc----c
Q 003970 379 AKLVEAFTYFADGICKCENWMGRKATGRVVLCFSTMGSVKTEEAEAAAKKANASGLIFAEPMT---------ELI----A 445 (782)
Q Consensus 379 ~~lv~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~k~~~~~~~Ga~g~i~~n~~~---------~~~----~ 445 (782)
.++|-+. ....|.+.. +.-+..|.+.+++||+|+ |..|..+++++||..+|+..+.. .+. .
T Consensus 66 ~~lV~ad---Pp~aC~elr-N~~f~~d~vaL~eRGeCS--Fl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq 139 (193)
T KOG3920|consen 66 LELVLAD---PPHACEELR-NEIFAPDSVALMERGECS--FLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQ 139 (193)
T ss_pred cceeecC---ChhHHHHHh-hcccCCCcEEEEecCCce--eeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccc
Confidence 4444433 256787643 234577899999999997 99999999999999999987644 222 2
Q ss_pred ccccccEEEEehhhHHHHHHHHh
Q 003970 446 EVDIIPTVRIDIAQGTQLRDYLA 468 (782)
Q Consensus 446 ~~~~~p~~~i~~~~g~~l~~~~~ 468 (782)
+...+|++++-..+|-.+..-+.
T Consensus 140 ~~AniPa~fllg~~Gy~ir~sL~ 162 (193)
T KOG3920|consen 140 DRANIPAVFLLGVTGYYIRVSLK 162 (193)
T ss_pred cccCCceEEEeccceEEEehhHH
Confidence 44688999888777766555554
No 79
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=87.78 E-value=6.4 Score=35.83 Aligned_cols=55 Identities=15% Similarity=-0.034 Sum_probs=38.7
Q ss_pred eEEEEEEEEecCCCCCeEEEEEEeCCCccEEEEEcceeEeccCCeEEEEEEEEEecc
Q 003970 684 TMTIKRTVKNVGQKKNAIYFASVVKPGGVEVVVWPRVLVFSWFKEEVSYYVSLKPLK 740 (782)
Q Consensus 684 ~~~~~rtvtnv~~~~~~ty~~~~~~p~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~ 740 (782)
.-.++.+|+|.+.. +.+|++++..++|+.+......+.+ ++|++.++.|.+..+.
T Consensus 32 ~N~Y~lkl~Nkt~~-~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~ 86 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQ-PRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPP 86 (118)
T ss_dssp EEEEEEEEEE-SSS--EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-G
T ss_pred EEEEEEEEEECCCC-CEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECH
Confidence 45677788999988 9999999999889998555578888 7899999999999864
No 80
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=77.79 E-value=29 Score=31.89 Aligned_cols=71 Identities=20% Similarity=0.229 Sum_probs=50.1
Q ss_pred CceEEEEEEEEecCCCCCeEEEEEEe----CCCcc-E-------------------EEEEcceeEeccCCeEEEEEEEEE
Q 003970 682 QSTMTIKRTVKNVGQKKNAIYFASVV----KPGGV-E-------------------VVVWPRVLVFSWFKEEVSYYVSLK 737 (782)
Q Consensus 682 ~~~~~~~rtvtnv~~~~~~ty~~~~~----~p~g~-~-------------------v~v~p~~~~~~~~g~~~~~~v~~~ 737 (782)
....+++.+|+|.++. ..+|.+++. ...|+ . +++ |..+++ +++|+++++++++
T Consensus 26 ~q~~~l~v~i~N~s~~-~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~~sk~V~~~i~ 102 (121)
T PF06030_consen 26 GQKQTLEVRITNNSDK-EITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPNESKTVTFTIK 102 (121)
T ss_pred CCEEEEEEEEEeCCCC-CEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCCCEEEEEEEEE
Confidence 3578899999999887 889988763 12221 0 122 445777 7899999999999
Q ss_pred ecccCCCceEEEEEEEEc
Q 003970 738 PLKMSQGRFDFGQIVWSD 755 (782)
Q Consensus 738 ~~~~~~~~~~~G~~~~~~ 755 (782)
.+...-.+-+-|.|.+..
T Consensus 103 ~P~~~f~G~ilGGi~~~e 120 (121)
T PF06030_consen 103 MPKKAFDGIILGGIYFSE 120 (121)
T ss_pred cCCCCcCCEEEeeEEEEe
Confidence 876555666778887753
No 81
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=76.97 E-value=1.6 Score=52.01 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=22.2
Q ss_pred CCCCCCCcEEEEeccccCCCCCCCC
Q 003970 130 QLAYGDDIVVGIFDTGVWPESESFQ 154 (782)
Q Consensus 130 ~~~~G~gV~VgVIDtGId~~Hp~f~ 154 (782)
..+.|+||+|||+|||||+.-|-+.
T Consensus 76 PeYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 76 PEYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred cCCCCCceEEEEeecCCCCCCCCce
Confidence 3678999999999999999888774
No 82
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=63.03 E-value=62 Score=29.39 Aligned_cols=68 Identities=15% Similarity=0.090 Sum_probs=43.9
Q ss_pred eEEEEEEEEecCCCCCeEEEEEEeC---CCc----cEEEEEcceeEeccCCeEEEEEEEEEecccCCCceEEEEEEEE
Q 003970 684 TMTIKRTVKNVGQKKNAIYFASVVK---PGG----VEVVVWPRVLVFSWFKEEVSYYVSLKPLKMSQGRFDFGQIVWS 754 (782)
Q Consensus 684 ~~~~~rtvtnv~~~~~~ty~~~~~~---p~g----~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~~~~~ 754 (782)
..+.+.+|+|.++. +..+.+.+.. ..+ -.+.++|..+.+ ++|++++++| +.....+.+....=+|.+.
T Consensus 15 ~~~~~i~v~N~~~~-~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~~~~~~~~E~~yrl~~~ 89 (122)
T PF00345_consen 15 QRSASITVTNNSDQ-PYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRGSKLPIDRESLYRLSFR 89 (122)
T ss_dssp SSEEEEEEEESSSS-EEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EECSGS-SSS-EEEEEEEE
T ss_pred CCEEEEEEEcCCCC-cEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-EecCCCCCCceEEEEEEEE
Confidence 45667788898876 6666666653 111 147799999999 6899999999 7644333443333345553
No 83
>COG1470 Predicted membrane protein [Function unknown]
Probab=56.89 E-value=88 Score=35.25 Aligned_cols=63 Identities=17% Similarity=0.153 Sum_probs=50.8
Q ss_pred ceEEEEEEEEecCCCCCeE-EEEEEeCCCccEEEEEcceeEeccCCeEEEEEEEEEec-ccCCCce
Q 003970 683 STMTIKRTVKNVGQKKNAI-YFASVVKPGGVEVVVWPRVLVFSWFKEEVSYYVSLKPL-KMSQGRF 746 (782)
Q Consensus 683 ~~~~~~rtvtnv~~~~~~t-y~~~~~~p~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~-~~~~~~~ 746 (782)
...++.-.+.|.|.. +.| -++++..|.|-++.|.|.++-.-++||++++++|++++ +..++.|
T Consensus 397 ee~~i~i~I~NsGna-~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY 461 (513)
T COG1470 397 EEKTIRISIENSGNA-PLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDY 461 (513)
T ss_pred ccceEEEEEEecCCC-ccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcE
Confidence 457778889999976 444 67889999999999999987655889999999999986 3556666
No 84
>COG1470 Predicted membrane protein [Function unknown]
Probab=53.81 E-value=1.6e+02 Score=33.39 Aligned_cols=55 Identities=16% Similarity=0.191 Sum_probs=44.1
Q ss_pred ceEEEEEEEEecCCCCCeEEEEEEe-CCCccEEEEEc-----ceeEeccCCeEEEEEEEEEec
Q 003970 683 STMTIKRTVKNVGQKKNAIYFASVV-KPGGVEVVVWP-----RVLVFSWFKEEVSYYVSLKPL 739 (782)
Q Consensus 683 ~~~~~~rtvtnv~~~~~~ty~~~~~-~p~g~~v~v~p-----~~~~~~~~g~~~~~~v~~~~~ 739 (782)
.+..++.++.|.|.. +.+|.+++. .|+|......- +++.+ .+||++.|+|.+.++
T Consensus 284 ~t~sf~V~IeN~g~~-~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps 344 (513)
T COG1470 284 TTASFTVSIENRGKQ-DDEYALELSGLPEGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPS 344 (513)
T ss_pred CceEEEEEEccCCCC-CceeEEEeccCCCCcceEEeeCceEEEEEEe-cCCCceEEEEEEecC
Confidence 356888899999998 999999998 78886655433 34556 689999999999985
No 85
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=53.40 E-value=71 Score=36.24 Aligned_cols=54 Identities=19% Similarity=0.104 Sum_probs=44.7
Q ss_pred eEEEEEEEEecCCCCCeEEEEEEeCCCccEEEEEcceeEeccCCeEEEEEEEEEec
Q 003970 684 TMTIKRTVKNVGQKKNAIYFASVVKPGGVEVVVWPRVLVFSWFKEEVSYYVSLKPL 739 (782)
Q Consensus 684 ~~~~~rtvtnv~~~~~~ty~~~~~~p~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~ 739 (782)
....+..+.|.+.. +.+|+++++..++.++...+..+++ ++||+.++.|.+..+
T Consensus 347 ~N~Y~~~i~Nk~~~-~~~~~l~v~g~~~~~~~~~~~~i~v-~~g~~~~~~v~v~~~ 400 (434)
T TIGR02745 347 ENTYTLKILNKTEQ-PHEYYLSVLGLPGIKIEGPGAPIHV-KAGEKVKLPVFLRTP 400 (434)
T ss_pred EEEEEEEEEECCCC-CEEEEEEEecCCCcEEEcCCceEEE-CCCCEEEEEEEEEec
Confidence 45567778999888 9999999999889888775457778 689999999999875
No 86
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=50.86 E-value=87 Score=27.52 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=38.5
Q ss_pred eEEEEEEEEecCCCCCeEEEEEEeCCCccEEEEEcceeEeccCCeEEEEEEEEEec
Q 003970 684 TMTIKRTVKNVGQKKNAIYFASVVKPGGVEVVVWPRVLVFSWFKEEVSYYVSLKPL 739 (782)
Q Consensus 684 ~~~~~rtvtnv~~~~~~ty~~~~~~p~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~ 739 (782)
......+|+|.++. .--|++....|..+ .|.|..-.+ .+|+++++.|++...
T Consensus 19 ~~~~~l~l~N~s~~-~i~fKiktt~~~~y--~v~P~~G~i-~p~~~~~i~I~~~~~ 70 (109)
T PF00635_consen 19 QQSCELTLTNPSDK-PIAFKIKTTNPNRY--RVKPSYGII-EPGESVEITITFQPF 70 (109)
T ss_dssp -EEEEEEEEE-SSS-EEEEEEEES-TTTE--EEESSEEEE--TTEEEEEEEEE-SS
T ss_pred eEEEEEEEECCCCC-cEEEEEEcCCCceE--EecCCCEEE-CCCCEEEEEEEEEec
Confidence 46667789999987 88899988888764 567998777 789999999999874
No 87
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=47.94 E-value=1.5e+02 Score=27.90 Aligned_cols=68 Identities=13% Similarity=0.170 Sum_probs=46.4
Q ss_pred EEEEEEEEecCCCCCeEEEEEEeCCCccEEEEEcceeEeccCCeEEEEEEEEEecccCCCceEEEEEEEE
Q 003970 685 MTIKRTVKNVGQKKNAIYFASVVKPGGVEVVVWPRVLVFSWFKEEVSYYVSLKPLKMSQGRFDFGQIVWS 754 (782)
Q Consensus 685 ~~~~rtvtnv~~~~~~ty~~~~~~p~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~~~~~ 754 (782)
..+...|-|.....-..-++.+..-..+++.-.|..+++ .+++.++++.+++... ...+.+||.|++.
T Consensus 71 IvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL-~P~~~~~i~~~iKVsS-tetGvIfG~I~Yd 138 (140)
T PF07718_consen 71 IVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITL-APHGFARIKATIKVSS-TETGVIFGNIVYD 138 (140)
T ss_pred EEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceee-CCCcEEEEEEEEEEEe-ccCCEEEEEEEEe
Confidence 344444555543212223444445567888888999998 6899999999998853 5567899999985
No 88
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=37.44 E-value=2.6e+02 Score=23.73 Aligned_cols=53 Identities=21% Similarity=0.128 Sum_probs=32.4
Q ss_pred ceEEEEEEEEecCCCCCeEEEEEEeCCCccEEEEEccee-EeccCCeEEEEEEEEEec
Q 003970 683 STMTIKRTVKNVGQKKNAIYFASVVKPGGVEVVVWPRVL-VFSWFKEEVSYYVSLKPL 739 (782)
Q Consensus 683 ~~~~~~rtvtnv~~~~~~ty~~~~~~p~g~~v~v~p~~~-~~~~~g~~~~~~v~~~~~ 739 (782)
...+++.+|+|.|......+.+.+... |..+ .-..+ .+ ++|++.++++++...
T Consensus 19 ~~~~i~~~V~N~G~~~~~~~~v~~~~~-~~~~--~~~~i~~L-~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 19 EPVTITVTVKNNGTADAENVTVRLYLD-GNSV--STVTIPSL-APGESETVTFTWTPP 72 (101)
T ss_dssp SEEEEEEEEEE-SSS-BEEEEEEEEET-TEEE--EEEEESEB--TTEEEEEEEEEE-S
T ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEC-Ccee--ccEEECCc-CCCcEEEEEEEEEeC
Confidence 578899999999975345567666543 2222 11222 34 689999988888874
No 89
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=35.95 E-value=37 Score=24.65 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=19.6
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhccc
Q 003970 559 VALIKSAHPNWSPAAIRSALMTTAY 583 (782)
Q Consensus 559 aALl~q~~P~lsp~~Ik~~L~~TA~ 583 (782)
+--|++.+|+|++..|+..|...-.
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~~ 29 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANNG 29 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcCC
Confidence 4467899999999999999976543
No 90
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=34.54 E-value=2.4e+02 Score=27.86 Aligned_cols=69 Identities=26% Similarity=0.372 Sum_probs=42.9
Q ss_pred ceEEEEEEEEecCCCCCeEEEEEEeC----CCccEEEEEcceeEec--cCCeEEEEEEEEEecccCCCceEEEE--EEEE
Q 003970 683 STMTIKRTVKNVGQKKNAIYFASVVK----PGGVEVVVWPRVLVFS--WFKEEVSYYVSLKPLKMSQGRFDFGQ--IVWS 754 (782)
Q Consensus 683 ~~~~~~rtvtnv~~~~~~ty~~~~~~----p~g~~v~v~p~~~~~~--~~g~~~~~~v~~~~~~~~~~~~~~G~--~~~~ 754 (782)
...+++.+|-|+|+ ..-|.+++.. |+.+++.---.+.++. ++|+..+.++++++. ..+.|.++. ++.+
T Consensus 38 ~~v~V~~~iyN~G~--~~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~--~~G~f~~~~a~VtY~ 113 (181)
T PF05753_consen 38 EDVTVTYTIYNVGS--SAAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPK--KSGYFNFTPAVVTYR 113 (181)
T ss_pred cEEEEEEEEEECCC--CeEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeee--eeEEEEccCEEEEEE
Confidence 47899999999998 4568787764 3444442111111111 679999999999873 345555543 4454
Q ss_pred c
Q 003970 755 D 755 (782)
Q Consensus 755 ~ 755 (782)
+
T Consensus 114 ~ 114 (181)
T PF05753_consen 114 D 114 (181)
T ss_pred C
Confidence 3
No 91
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=33.58 E-value=4.6e+02 Score=32.76 Aligned_cols=63 Identities=16% Similarity=0.080 Sum_probs=35.1
Q ss_pred cCeEEEeecCceEEEEEEEEecC-CCCCeEEEEEEe-----CCCccEEEEEcceeEeccCCe-EEEEEEEEEec
Q 003970 673 YPSITVSNLQSTMTIKRTVKNVG-QKKNAIYFASVV-----KPGGVEVVVWPRVLVFSWFKE-EVSYYVSLKPL 739 (782)
Q Consensus 673 ~ps~~~~~~~~~~~~~rtvtnv~-~~~~~ty~~~~~-----~p~g~~v~v~p~~~~~~~~g~-~~~~~v~~~~~ 739 (782)
-+++++.+-. .+++.+|+..| +. ..+-++... +-.|.+......+|+|. +|| +++++|.+..+
T Consensus 406 ~~~Y~V~En~--GtV~VtV~R~GGdl-~~tVsVdY~T~DGTA~AG~DY~~~sGTLtF~-PGEt~KtItV~IIDD 475 (928)
T TIGR00845 406 PGHYTCLENC--GTVALTVVRRGGDL-TNTVYVDYRTEDGTANAGSDYEFTEGTLVFK-PGETQKEFRIGIIDD 475 (928)
T ss_pred CCeEEEeecC--cEEEEEEEEccCCC-CceEEEEEEccCCccCCCCCccccCceEEEC-CCceEEEEEEEEccC
Confidence 3455554432 34555665555 32 333344332 34566666667899995 555 56777777654
No 92
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=32.70 E-value=1.2e+02 Score=25.42 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=28.1
Q ss_pred EEEEEcceeEeccCCeEEEEEEEEEecccCCCceEEEEEEEEcC
Q 003970 713 EVVVWPRVLVFSWFKEEVSYYVSLKPLKMSQGRFDFGQIVWSDG 756 (782)
Q Consensus 713 ~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~~~~~~~ 756 (782)
.+++.|..+++ ..|+++.|++++..... .. ...++|+..
T Consensus 4 ~i~i~p~~~~l-~~G~~~~l~a~~~~~~~--~~--~~~v~w~Ss 42 (81)
T smart00635 4 SVTVTPTTASV-KKGLTLQLTATVTPSSA--KV--TGKVTWTSS 42 (81)
T ss_pred EEEEeCCeeEE-eCCCeEEEEEEEECCCC--Cc--cceEEEEEC
Confidence 57788998888 58999999999765321 11 456888754
No 93
>PRK15019 CsdA-binding activator; Provisional
Probab=26.50 E-value=62 Score=30.83 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=27.4
Q ss_pred eeccccchhhHHHHHHHHHHHhCCCCCHHHHHH
Q 003970 544 FQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRS 576 (782)
Q Consensus 544 ~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~ 576 (782)
.+.|.| =|+.|-|.+|||.+.+-..+|++|.+
T Consensus 78 ~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 78 HFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 344555 67999999999999999999999976
No 94
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=25.48 E-value=31 Score=15.91 Aligned_cols=6 Identities=50% Similarity=0.717 Sum_probs=4.1
Q ss_pred cccCCC
Q 003970 495 YFSSRG 500 (782)
Q Consensus 495 ~fSS~G 500 (782)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 477776
No 95
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=25.29 E-value=3.4e+02 Score=22.93 Aligned_cols=19 Identities=11% Similarity=-0.079 Sum_probs=11.9
Q ss_pred eeEeccCCeEEEEEEEEEec
Q 003970 720 VLVFSWFKEEVSYYVSLKPL 739 (782)
Q Consensus 720 ~~~~~~~g~~~~~~v~~~~~ 739 (782)
..++ ++||+++|+.++...
T Consensus 53 ~~~l-~pGe~~~~~~~~~~~ 71 (82)
T PF12690_consen 53 EETL-EPGESLTYEETWDLK 71 (82)
T ss_dssp EEEE--TT-EEEEEEEESS-
T ss_pred EEEE-CCCCEEEEEEEECCC
Confidence 4445 679999988888754
No 96
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=25.16 E-value=69 Score=30.19 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=28.5
Q ss_pred eeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHH
Q 003970 543 NFQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSA 577 (782)
Q Consensus 543 ~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~ 577 (782)
..+.|.| =|+.|-|.+|||.+.+-..+|++|.+.
T Consensus 72 ~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 72 LHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 3455666 589999999999999999999998753
No 97
>smart00237 Calx_beta Domains in Na-Ca exchangers and integrin-beta4. Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)
Probab=24.88 E-value=4.4e+02 Score=22.47 Aligned_cols=63 Identities=16% Similarity=0.109 Sum_probs=31.8
Q ss_pred CeEEEeecCceEEEEEEEEecCCCCCeEEEEEEe-----CCCccEEEEEcceeEeccCCeEEEEEEEEEec
Q 003970 674 PSITVSNLQSTMTIKRTVKNVGQKKNAIYFASVV-----KPGGVEVVVWPRVLVFSWFKEEVSYYVSLKPL 739 (782)
Q Consensus 674 ps~~~~~~~~~~~~~rtvtnv~~~~~~ty~~~~~-----~p~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~ 739 (782)
+++++..-.+ +++.+|...|.. ....++.+. +-.|........+|.|.+...+++|+|.+..+
T Consensus 9 ~~~~V~E~~g--~~~v~V~R~g~~-~~~~~V~~~t~~gtA~~g~Dy~~~~g~l~F~~ge~~k~i~i~i~dD 76 (90)
T smart00237 9 PVYTVSESDG--EVEVCVVRTGGA-RGTVVVPYRTEDGTATAGSDYEPVEGTLTFPPGETEKCIRIKIIDD 76 (90)
T ss_pred CeEEEEECCe--EEEEEEEecCCC-CcEEEEEEEEcCCcCCCCCCccccceEEEECCCCEEEEEEEEEeCC
Confidence 3555554433 344445444543 344444332 33455555557788885333456666665543
No 98
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=23.99 E-value=64 Score=22.24 Aligned_cols=13 Identities=23% Similarity=0.767 Sum_probs=10.6
Q ss_pred chhhHHHHHHHHH
Q 003970 550 MSCPHVSGVVALI 562 (782)
Q Consensus 550 mAaP~VAG~aALl 562 (782)
.|||.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998744
No 99
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=23.86 E-value=66 Score=25.04 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=23.2
Q ss_pred ceeeeccccchhhHHHHHHH------HHHHhCCCCCHHHHHHHHH
Q 003970 541 KWNFQSGTSMSCPHVSGVVA------LIKSAHPNWSPAAIRSALM 579 (782)
Q Consensus 541 ~y~~~sGTSmAaP~VAG~aA------Ll~q~~P~lsp~~Ik~~L~ 579 (782)
+--.+.||=+..=.|....+ -+.+.||.+++++|+++|.
T Consensus 10 G~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 10 GQPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp G--EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred CcceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 33456677776655555432 3456699999999999984
No 100
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=22.91 E-value=2.9e+02 Score=20.27 Aligned_cols=44 Identities=14% Similarity=-0.006 Sum_probs=22.1
Q ss_pred EEEEecCCCCCeEEEEEEeCCCccEEEEEcceeEeccCCeEEEEEEEE
Q 003970 689 RTVKNVGQKKNAIYFASVVKPGGVEVVVWPRVLVFSWFKEEVSYYVSL 736 (782)
Q Consensus 689 rtvtnv~~~~~~ty~~~~~~p~g~~v~v~p~~~~~~~~g~~~~~~v~~ 736 (782)
.+++|.|+. +..- -.++..=|- .+++...-.+ ++||+..++|++
T Consensus 2 F~~~N~g~~-~L~I-~~v~tsCgC-t~~~~~~~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDS-PLVI-TDVQTSCGC-TTAEYSKKPI-APGESGKIKVTY 45 (45)
T ss_pred EEEEECCCC-cEEE-EEeeEccCC-EEeeCCcceE-CCCCEEEEEEEC
Confidence 357888864 3322 122222232 1222222223 689998888864
No 101
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=22.31 E-value=84 Score=29.61 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=27.5
Q ss_pred eeccccchhhHHHHHHHHHHHhCCCCCHHHHHH
Q 003970 544 FQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRS 576 (782)
Q Consensus 544 ~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~ 576 (782)
.+.|.| =|+.|-|.+||+.+.+-..+|++|.+
T Consensus 68 ~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 68 ELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 444666 68999999999999999999999875
No 102
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=21.27 E-value=1.3e+02 Score=21.71 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=21.4
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhcc
Q 003970 558 VVALIKSAHPNWSPAAIRSALMTTA 582 (782)
Q Consensus 558 ~aALl~q~~P~lsp~~Ik~~L~~TA 582 (782)
.+..|++.+|+++...|+..|...-
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~~ 29 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEANN 29 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcC
Confidence 4567899999999999999998644
No 103
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=21.23 E-value=96 Score=28.65 Aligned_cols=33 Identities=21% Similarity=0.203 Sum_probs=26.5
Q ss_pred eeccccchhhHHHHHHHHHHHhCCCCCHHHHHHH
Q 003970 544 FQSGTSMSCPHVSGVVALIKSAHPNWSPAAIRSA 577 (782)
Q Consensus 544 ~~sGTSmAaP~VAG~aALl~q~~P~lsp~~Ik~~ 577 (782)
.+.|.|= |+.|-|++||+.+.+-..+|++|.+.
T Consensus 59 ~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 59 HFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 4456655 67999999999999999999998764
No 104
>PLN03080 Probable beta-xylosidase; Provisional
Probab=20.86 E-value=2.6e+02 Score=34.44 Aligned_cols=54 Identities=15% Similarity=0.108 Sum_probs=32.3
Q ss_pred eEEEEEEEEecCCC-CCeEEEEEEeCCCcc-----EEEEEcceeEeccCCeEEEEEEEEEe
Q 003970 684 TMTIKRTVKNVGQK-KNAIYFASVVKPGGV-----EVVVWPRVLVFSWFKEEVSYYVSLKP 738 (782)
Q Consensus 684 ~~~~~rtvtnv~~~-~~~ty~~~~~~p~g~-----~v~v~p~~~~~~~~g~~~~~~v~~~~ 738 (782)
..+++.+|||+|+. +.++-.+-+..|... +--+--+.+.+ ++||++++++++..
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L-~~Ges~~V~~~l~~ 744 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHT-ASGRSTETEIVVDP 744 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEee-CCCCEEEEEEEeCc
Confidence 47889999999976 133333444444321 11111123344 68999999998875
Done!