Query 003972
Match_columns 782
No_of_seqs 396 out of 1670
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 15:16:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003972.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003972hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1244 Predicted transcriptio 99.1 1.3E-11 2.7E-16 128.5 0.9 82 517-634 243-329 (336)
2 KOG1512 PHD Zn-finger protein 99.0 1.1E-10 2.3E-15 122.3 1.3 92 507-635 257-362 (381)
3 KOG0956 PHD finger protein AF1 98.8 2.5E-09 5.4E-14 122.4 3.9 132 510-645 7-189 (900)
4 COG5141 PHD zinc finger-contai 98.7 5.3E-09 1.2E-13 116.1 1.0 108 506-622 191-344 (669)
5 KOG0955 PHD finger protein BR1 98.5 6.6E-08 1.4E-12 117.8 3.5 106 505-618 216-367 (1051)
6 KOG4443 Putative transcription 98.4 6.6E-08 1.4E-12 111.2 2.0 93 507-635 17-117 (694)
7 KOG0954 PHD finger protein [Ge 98.4 1.5E-07 3.2E-12 109.1 2.4 104 506-617 269-416 (893)
8 KOG4299 PHD Zn-finger protein 98.3 5E-07 1.1E-11 104.0 4.4 51 577-636 255-305 (613)
9 PF15446 zf-PHD-like: PHD/FYVE 98.1 3.2E-06 6.8E-11 83.8 5.1 94 510-614 1-142 (175)
10 KOG4299 PHD Zn-finger protein 98.0 1.9E-06 4.1E-11 99.3 1.1 45 508-552 253-304 (613)
11 KOG1512 PHD Zn-finger protein 97.9 2.2E-06 4.9E-11 90.4 0.7 83 446-551 275-361 (381)
12 KOG4323 Polycomb-like PHD Zn-f 97.9 6.2E-06 1.3E-10 93.2 3.9 131 507-643 82-231 (464)
13 smart00258 SAND SAND domain. 97.9 5.3E-06 1.2E-10 72.2 2.0 62 432-494 5-68 (73)
14 PF00628 PHD: PHD-finger; Int 97.9 3E-06 6.5E-11 67.9 0.3 48 578-634 2-49 (51)
15 KOG4443 Putative transcription 97.9 5E-06 1.1E-10 96.1 2.1 104 507-613 67-180 (694)
16 KOG1244 Predicted transcriptio 97.8 4.3E-06 9.3E-11 87.9 0.6 47 506-552 279-330 (336)
17 KOG0383 Predicted helicase [Ge 97.8 1.3E-05 2.9E-10 94.9 3.1 88 525-633 1-91 (696)
18 KOG1473 Nucleosome remodeling 97.8 6.6E-06 1.4E-10 99.2 0.3 127 506-644 342-487 (1414)
19 smart00249 PHD PHD zinc finger 97.7 2.2E-05 4.7E-10 60.4 3.1 46 578-633 2-47 (47)
20 KOG0825 PHD Zn-finger protein 97.7 1.3E-05 2.9E-10 93.6 2.3 54 573-637 213-267 (1134)
21 PF00628 PHD: PHD-finger; Int 97.7 8.7E-06 1.9E-10 65.3 0.1 42 510-551 1-49 (51)
22 smart00249 PHD PHD zinc finger 97.7 3.6E-05 7.8E-10 59.2 3.2 41 510-550 1-47 (47)
23 KOG0383 Predicted helicase [Ge 97.6 3.6E-05 7.7E-10 91.4 3.2 47 506-552 45-93 (696)
24 PF01342 SAND: SAND domain; I 97.5 1.1E-05 2.4E-10 71.9 -2.5 62 432-494 13-77 (82)
25 KOG1973 Chromatin remodeling p 97.3 9.6E-05 2.1E-09 79.6 1.6 43 509-552 222-267 (274)
26 COG5034 TNG2 Chromatin remodel 97.3 0.00012 2.5E-09 77.0 1.8 45 577-636 223-270 (271)
27 KOG1973 Chromatin remodeling p 97.1 0.0002 4.4E-09 77.1 1.6 37 592-635 228-267 (274)
28 KOG0825 PHD Zn-finger protein 97.0 0.00033 7.2E-09 82.4 2.1 47 506-552 213-265 (1134)
29 COG5034 TNG2 Chromatin remodel 96.9 0.00039 8.4E-09 73.2 1.8 45 507-552 220-269 (271)
30 PF13831 PHD_2: PHD-finger; PD 96.4 0.00068 1.5E-08 51.5 -0.7 34 518-551 2-36 (36)
31 KOG0957 PHD finger protein [Ge 96.2 0.0019 4.1E-08 73.2 1.3 47 576-633 545-595 (707)
32 KOG0957 PHD finger protein [Ge 96.0 0.003 6.5E-08 71.6 1.7 105 508-616 119-277 (707)
33 cd04718 BAH_plant_2 BAH, or Br 96.0 0.0033 7E-08 62.0 1.6 27 605-636 1-27 (148)
34 KOG1245 Chromatin remodeling c 95.6 0.0029 6.4E-08 80.9 -0.2 56 574-640 1107-1162(1404)
35 PF13508 Acetyltransf_7: Acety 95.5 0.02 4.3E-07 49.1 4.6 44 737-781 4-47 (79)
36 KOG0956 PHD finger protein AF1 95.5 0.0056 1.2E-07 71.7 1.3 50 575-635 5-56 (900)
37 KOG0955 PHD finger protein BR1 95.4 0.0084 1.8E-07 74.5 2.7 51 573-634 217-267 (1051)
38 cd04718 BAH_plant_2 BAH, or Br 95.3 0.01 2.2E-07 58.6 2.1 24 529-552 1-26 (148)
39 PF00583 Acetyltransf_1: Acety 94.5 0.034 7.3E-07 47.2 3.2 40 742-781 2-46 (83)
40 smart00258 SAND SAND domain. 94.2 0.053 1.1E-06 47.7 3.8 49 246-296 20-69 (73)
41 KOG4323 Polycomb-like PHD Zn-f 94.1 0.018 3.9E-07 65.9 0.8 43 510-552 170-223 (464)
42 KOG1245 Chromatin remodeling c 93.5 0.019 4.1E-07 73.8 -0.4 47 506-552 1106-1157(1404)
43 COG5141 PHD zinc finger-contai 93.4 0.027 5.8E-07 64.2 0.5 47 576-633 194-240 (669)
44 PF13673 Acetyltransf_10: Acet 92.7 0.13 2.9E-06 46.3 4.1 42 736-781 44-85 (117)
45 PF13527 Acetyltransf_9: Acety 92.4 0.19 4E-06 46.4 4.6 77 696-781 10-93 (127)
46 KOG0954 PHD finger protein [Ge 92.3 0.055 1.2E-06 64.3 1.1 50 574-634 270-319 (893)
47 PF01342 SAND: SAND domain; I 91.9 0.087 1.9E-06 47.2 1.7 54 240-295 18-77 (82)
48 cd04301 NAT_SF N-Acyltransfera 91.7 0.18 3.8E-06 38.8 3.2 43 739-781 2-46 (65)
49 PF13832 zf-HC5HC2H_2: PHD-zin 91.4 0.13 2.8E-06 47.6 2.4 33 576-616 56-90 (110)
50 PRK03624 putative acetyltransf 90.0 0.27 5.8E-06 45.2 3.1 44 737-781 46-89 (140)
51 PF13831 PHD_2: PHD-finger; PD 89.4 0.048 1.1E-06 41.5 -1.9 33 594-633 2-35 (36)
52 PRK10146 aminoalkylphosphonic 88.7 0.43 9.4E-06 44.7 3.6 43 739-781 50-97 (144)
53 PRK07757 acetyltransferase; Pr 88.1 0.5 1.1E-05 45.1 3.6 42 740-781 45-86 (152)
54 PRK10314 putative acyltransfer 87.8 0.54 1.2E-05 46.1 3.8 43 739-781 51-95 (153)
55 PRK10975 TDP-fucosamine acetyl 87.7 0.56 1.2E-05 47.2 3.9 49 733-781 99-147 (194)
56 COG3393 Predicted acetyltransf 87.4 0.37 7.9E-06 51.9 2.4 44 738-781 179-222 (268)
57 TIGR03448 mycothiol_MshD mycot 84.9 1 2.2E-05 48.0 4.2 45 737-781 47-91 (292)
58 PRK07922 N-acetylglutamate syn 84.8 0.89 1.9E-05 45.3 3.5 43 739-781 48-91 (169)
59 TIGR03827 GNAT_ablB putative b 84.7 0.91 2E-05 48.4 3.8 46 736-781 158-204 (266)
60 PRK09491 rimI ribosomal-protei 83.3 1.4 3.1E-05 41.8 4.1 47 734-781 38-84 (146)
61 TIGR01575 rimI ribosomal-prote 83.1 1.5 3.2E-05 39.9 4.0 43 738-781 33-75 (131)
62 PF12746 GNAT_acetyltran: GNAT 82.4 1.3 2.9E-05 47.9 3.8 46 734-781 164-209 (265)
63 TIGR02382 wecD_rffC TDP-D-fuco 82.0 1.7 3.8E-05 43.7 4.3 43 739-781 102-144 (191)
64 PF14446 Prok-RING_1: Prokaryo 80.8 0.95 2.1E-05 37.7 1.6 38 576-618 6-43 (54)
65 TIGR03448 mycothiol_MshD mycot 80.5 1.6 3.5E-05 46.4 3.7 48 734-781 198-247 (292)
66 TIGR01890 N-Ac-Glu-synth amino 79.1 1.8 4E-05 49.5 3.8 42 740-781 326-368 (429)
67 PLN02706 glucosamine 6-phospha 78.7 2.7 5.9E-05 39.9 4.3 38 744-781 63-106 (150)
68 PF07227 DUF1423: Protein of u 78.1 2.3 5.1E-05 48.8 4.2 58 578-638 131-194 (446)
69 PLN02825 amino-acid N-acetyltr 76.8 2.3 5.1E-05 50.1 3.8 44 738-781 409-453 (515)
70 PRK10140 putative acetyltransf 76.7 3.1 6.8E-05 39.5 4.1 45 736-781 51-99 (162)
71 PRK12308 bifunctional arginino 76.3 2.5 5.4E-05 50.8 4.0 43 739-781 506-548 (614)
72 PRK01346 hypothetical protein; 76.0 2.7 5.8E-05 47.4 4.0 44 738-781 49-100 (411)
73 PRK13688 hypothetical protein; 75.7 3.4 7.3E-05 41.1 4.1 41 741-781 50-100 (156)
74 PF08445 FR47: FR47-like prote 74.8 1.9 4.2E-05 38.4 2.0 36 745-781 7-42 (86)
75 TIGR00124 cit_ly_ligase [citra 73.6 3.5 7.6E-05 46.0 4.0 45 732-781 27-71 (332)
76 PTZ00330 acetyltransferase; Pr 73.6 4.3 9.4E-05 38.1 4.1 45 737-781 53-103 (147)
77 COG1246 ArgA N-acetylglutamate 70.9 3.3 7.2E-05 41.5 2.7 42 740-781 44-86 (153)
78 TIGR02406 ectoine_EctA L-2,4-d 70.2 4.6 0.0001 39.5 3.6 45 737-781 40-87 (157)
79 PRK09831 putative acyltransfer 69.2 3.9 8.4E-05 39.1 2.8 38 739-781 56-93 (147)
80 PRK05279 N-acetylglutamate syn 69.0 5 0.00011 46.1 4.1 43 739-781 337-380 (441)
81 PF07897 DUF1675: Protein of u 67.9 5.9 0.00013 43.4 4.1 68 211-282 207-283 (284)
82 KOG1081 Transcription factor N 67.8 4.8 0.0001 47.0 3.6 48 504-552 85-132 (463)
83 PF12861 zf-Apc11: Anaphase-pr 67.5 2.4 5.1E-05 38.6 0.8 45 507-552 20-79 (85)
84 PHA01807 hypothetical protein 65.4 5.5 0.00012 39.6 3.0 44 738-781 55-102 (153)
85 PRK10562 putative acetyltransf 65.2 7 0.00015 37.1 3.6 38 740-781 52-89 (145)
86 PF14446 Prok-RING_1: Prokaryo 65.1 3.8 8.2E-05 34.3 1.5 30 508-537 5-38 (54)
87 PF07897 DUF1675: Protein of u 65.1 3.3 7.2E-05 45.3 1.5 32 450-481 252-283 (284)
88 KOG1473 Nucleosome remodeling 64.1 3.5 7.6E-05 51.9 1.6 45 576-634 345-389 (1414)
89 KOG2752 Uncharacterized conser 61.5 5.2 0.00011 44.1 2.2 102 510-614 57-167 (345)
90 KOG1829 Uncharacterized conser 57.4 3.3 7.1E-05 49.3 -0.2 50 577-639 513-562 (580)
91 PF13771 zf-HC5HC2H: PHD-like 52.1 6.4 0.00014 34.9 0.8 32 577-616 38-71 (90)
92 PF13302 Acetyltransf_3: Acety 52.0 19 0.00042 33.2 4.1 44 736-780 58-103 (142)
93 KOG4628 Predicted E3 ubiquitin 50.9 9.5 0.00021 42.9 2.1 43 509-552 230-275 (348)
94 PF11793 FANCL_C: FANCL C-term 50.7 6.9 0.00015 34.0 0.8 29 509-537 3-39 (70)
95 PRK15130 spermidine N1-acetylt 50.1 19 0.00041 35.6 3.9 43 738-781 59-103 (186)
96 PRK10514 putative acetyltransf 48.9 16 0.00034 34.3 3.0 37 740-781 54-90 (145)
97 PHA00673 acetyltransferase dom 48.0 24 0.00051 35.5 4.2 45 737-781 56-106 (154)
98 COG0456 RimI Acetyltransferase 43.8 15 0.00032 35.5 2.0 36 746-781 72-112 (177)
99 PF13832 zf-HC5HC2H_2: PHD-zin 43.7 13 0.00027 34.4 1.4 31 507-537 54-87 (110)
100 PF07943 PBP5_C: Penicillin-bi 42.6 27 0.00058 30.8 3.3 27 745-771 63-89 (91)
101 COG2153 ElaA Predicted acyltra 41.8 32 0.0007 34.5 3.9 88 679-781 5-97 (155)
102 PF13901 DUF4206: Domain of un 41.5 18 0.0004 37.6 2.3 36 577-613 154-189 (202)
103 PF15446 zf-PHD-like: PHD/FYVE 39.4 15 0.00032 37.5 1.2 57 578-637 2-61 (175)
104 PF13639 zf-RING_2: Ring finge 39.3 3.1 6.7E-05 32.3 -2.9 40 509-551 1-44 (44)
105 KOG1734 Predicted RING-contain 38.6 7.9 0.00017 42.0 -0.9 49 504-552 220-278 (328)
106 PRK10809 ribosomal-protein-S5- 37.9 41 0.00089 33.5 4.2 45 735-780 76-123 (194)
107 PF11793 FANCL_C: FANCL C-term 37.4 18 0.00038 31.5 1.2 34 577-613 4-39 (70)
108 PF13771 zf-HC5HC2H: PHD-like 37.2 17 0.00037 32.2 1.2 30 508-537 36-68 (90)
109 COG2388 Predicted acetyltransf 36.8 34 0.00075 31.9 3.1 46 734-781 15-60 (99)
110 TIGR03585 PseH pseudaminic aci 35.6 53 0.0012 31.0 4.4 39 741-781 56-96 (156)
111 PF13523 Acetyltransf_8: Acety 35.4 63 0.0014 30.7 4.9 48 733-780 45-98 (152)
112 KOG3612 PHD Zn-finger protein 34.9 26 0.00056 41.5 2.4 47 506-552 58-107 (588)
113 TIGR01686 FkbH FkbH-like domai 34.4 40 0.00087 37.1 3.8 46 735-781 230-278 (320)
114 TIGR03103 trio_acet_GNAT GNAT- 34.4 41 0.00088 40.2 4.0 46 736-781 123-176 (547)
115 KOG1246 DNA-binding protein ju 32.8 30 0.00065 43.7 2.7 46 507-552 154-203 (904)
116 KOG1632 Uncharacterized PHD Zn 32.4 26 0.00057 39.5 1.9 45 595-643 74-120 (345)
117 PF13420 Acetyltransf_4: Acety 32.2 71 0.0015 30.2 4.6 46 734-781 50-97 (155)
118 PF14542 Acetyltransf_CG: GCN5 32.2 39 0.00084 29.8 2.6 40 741-781 4-43 (78)
119 PF08444 Gly_acyl_tr_C: Aralky 30.2 23 0.00051 32.5 0.9 37 740-780 3-39 (89)
120 PRK10151 ribosomal-protein-L7/ 27.9 81 0.0017 30.9 4.3 37 743-780 74-112 (179)
121 PF13901 DUF4206: Domain of un 27.8 45 0.00097 34.7 2.6 39 507-552 151-197 (202)
122 COG0143 MetG Methionyl-tRNA sy 27.6 74 0.0016 38.3 4.6 48 543-613 125-172 (558)
123 PF10187 Nefa_Nip30_N: N-termi 27.4 46 0.001 31.2 2.3 26 285-310 35-60 (102)
124 PF07649 C1_3: C1-like domain; 26.4 21 0.00046 25.7 -0.0 28 578-611 3-30 (30)
125 PF13066 DUF3929: Protein of u 25.8 61 0.0013 27.2 2.5 28 283-310 4-31 (65)
126 KOG1246 DNA-binding protein ju 25.7 47 0.001 42.0 2.7 48 577-636 157-204 (904)
127 KOG1701 Focal adhesion adaptor 22.7 7.7 0.00017 44.5 -4.4 28 509-536 275-304 (468)
128 PF12678 zf-rbx1: RING-H2 zinc 20.6 23 0.0005 30.9 -1.0 26 524-551 48-73 (73)
129 KOG1701 Focal adhesion adaptor 20.4 67 0.0015 37.2 2.3 34 577-612 396-429 (468)
130 smart00547 ZnF_RBZ Zinc finger 20.3 67 0.0014 22.1 1.5 10 543-552 1-10 (26)
131 PF12861 zf-Apc11: Anaphase-pr 20.3 35 0.00076 31.2 0.1 15 599-613 49-63 (85)
132 KOG4628 Predicted E3 ubiquitin 20.1 39 0.00085 38.2 0.4 46 576-635 230-275 (348)
No 1
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=99.12 E-value=1.3e-11 Score=128.49 Aligned_cols=82 Identities=30% Similarity=0.885 Sum_probs=72.1
Q ss_pred CCceeecCCCCCcccccccCC-----CCCCCCCccCcCCCCCCCCCccccccccCCCCCCCccccCccccCCCCCCCccc
Q 003972 517 GENLLLCNGCPLAFHAACLDP-----LLIPESGWRCPNCRQGHSSSMSRSVDLKGGLEAPGAEVGGCVICRSHDFSAATF 591 (782)
Q Consensus 517 gG~Ll~Cd~Cp~afH~~CL~~-----~~vP~g~W~C~~C~~~~~~~~s~pi~l~r~~k~~~~e~~~C~vC~~~d~s~~~~ 591 (782)
+++|+.|..|+++-|..||.. ..+-...|.|..|+. |.+|+-.+
T Consensus 243 peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~-------------------------csicgtse------ 291 (336)
T KOG1244|consen 243 PEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKY-------------------------CSICGTSE------ 291 (336)
T ss_pred chhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecce-------------------------eccccCcC------
Confidence 468999999999999999996 234568999999986 99999765
Q ss_pred CCCCccccCCCCCccccccCCCCCCCCccccCCCCcEEcCCch
Q 003972 592 DDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCN 634 (782)
Q Consensus 592 ~~~~lL~CdqCer~yHv~CL~~~g~~~L~eiP~g~WFCc~~C~ 634 (782)
+++.+|+||-|+|.||++||.| +|.+.|+|.|-| .-|-
T Consensus 292 nddqllfcddcdrgyhmyclsp----pm~eppegswsc-~KOG 329 (336)
T KOG1244|consen 292 NDDQLLFCDDCDRGYHMYCLSP----PMVEPPEGSWSC-HLCL 329 (336)
T ss_pred CCceeEeecccCCceeeEecCC----CcCCCCCCchhH-HHHH
Confidence 5789999999999999999999 889999999999 5553
No 2
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.99 E-value=1.1e-10 Score=122.26 Aligned_cols=92 Identities=23% Similarity=0.634 Sum_probs=77.4
Q ss_pred CcccccccCCC---------CceeecCCCCCcccccccCC-----CCCCCCCccCcCCCCCCCCCccccccccCCCCCCC
Q 003972 507 SDDMCHVCGDG---------ENLLLCNGCPLAFHAACLDP-----LLIPESGWRCPNCRQGHSSSMSRSVDLKGGLEAPG 572 (782)
Q Consensus 507 ndd~C~vCgdg---------G~Ll~Cd~Cp~afH~~CL~~-----~~vP~g~W~C~~C~~~~~~~~s~pi~l~r~~k~~~ 572 (782)
-...|.+|-++ ..+++|..|..++|..|+.. ..+....|.|..|+.
T Consensus 257 ~~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~l-------------------- 316 (381)
T KOG1512|consen 257 RRNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCEL-------------------- 316 (381)
T ss_pred chhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHh--------------------
Confidence 34569999764 46999999999999999996 224457899999985
Q ss_pred ccccCccccCCCCCCCcccCCCCccccCCCCCccccccCCCCCCCCccccCCCCcEEcCCchh
Q 003972 573 AEVGGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNR 635 (782)
Q Consensus 573 ~e~~~C~vC~~~d~s~~~~~~~~lL~CdqCer~yHv~CL~~~g~~~L~eiP~g~WFCc~~C~~ 635 (782)
|.||+++. .+..+++||.|+|.||..|+ .|..+|.|.|.|-..|..
T Consensus 317 -----C~IC~~P~------~E~E~~FCD~CDRG~HT~CV------GL~~lP~G~WICD~~C~~ 362 (381)
T KOG1512|consen 317 -----CRICLGPV------IESEHLFCDVCDRGPHTLCV------GLQDLPRGEWICDMRCRE 362 (381)
T ss_pred -----hhccCCcc------cchheeccccccCCCCcccc------ccccccCccchhhhHHHH
Confidence 99999875 47789999999999999998 678999999999666744
No 3
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=98.80 E-value=2.5e-09 Score=122.38 Aligned_cols=132 Identities=25% Similarity=0.571 Sum_probs=88.3
Q ss_pred cccccCCC-----CceeecCC--CCCcccccccCCCCCCCCCccCcCCCCCC------------CCCc------------
Q 003972 510 MCHVCGDG-----ENLLLCNG--CPLAFHAACLDPLLIPESGWRCPNCRQGH------------SSSM------------ 558 (782)
Q Consensus 510 ~C~vCgdg-----G~Ll~Cd~--Cp~afH~~CL~~~~vP~g~W~C~~C~~~~------------~~~~------------ 558 (782)
-|.||.|+ .-|+.||+ |..+.|+.|+++..+|.|.|||..|..+. .-++
T Consensus 7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GWAHV 86 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGWAHV 86 (900)
T ss_pred ceeeecCcCCCccCceeeecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCcccceecccCCCceEE
Confidence 48899885 36999998 99999999999999999999999996511 0000
Q ss_pred ----------------cccccccCCCCCCCccccCccccCCCCCCCcccCCCCccccC--CCCCccccccCCCCCCCCcc
Q 003972 559 ----------------SRSVDLKGGLEAPGAEVGGCVICRSHDFSAATFDDRTVIYCD--QCEKEFHVGCLRKNGLCDLK 620 (782)
Q Consensus 559 ----------------s~pi~l~r~~k~~~~e~~~C~vC~~~d~s~~~~~~~~lL~Cd--qCer~yHv~CL~~~g~~~L~ 620 (782)
.+||-|..+.. ..+ ...|+||.+-+... ...-+..|.|. .|.++||+.|.+..|+.--+
T Consensus 87 VCALYIPEVrFgNV~TMEPIiLq~VP~-dRf-nKtCYIC~E~Grpn-kA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE 163 (900)
T KOG0956|consen 87 VCALYIPEVRFGNVHTMEPIILQDVPH-DRF-NKTCYICNEEGRPN-KAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEE 163 (900)
T ss_pred EEEeeccceeecccccccceeeccCch-hhh-cceeeeecccCCcc-ccccccceecccccchhhhhhhHhhhhccceec
Confidence 01221111100 011 13699999764322 12346788897 79999999999887763222
Q ss_pred c-cCCC-CcEEcCCchhHHHHHHhhhh
Q 003972 621 E-IPKD-KWFCCDDCNRIHAALQDFVS 645 (782)
Q Consensus 621 e-iP~g-~WFCc~~C~~i~~~Lqkll~ 645 (782)
+ .-.+ .-|| -.|+.-+.+|.+.-.
T Consensus 164 ~gn~~dNVKYC-GYCk~HfsKlkk~~~ 189 (900)
T KOG0956|consen 164 EGNISDNVKYC-GYCKYHFSKLKKSPA 189 (900)
T ss_pred cccccccceec-hhHHHHHHHhhcCCC
Confidence 2 1122 3367 899999999887543
No 4
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=98.66 E-value=5.3e-09 Score=116.09 Aligned_cols=108 Identities=29% Similarity=0.755 Sum_probs=76.2
Q ss_pred CCcccccccCCC-----CceeecCCCCCcccccccCCCCCCCCCccCcCCCCCC------------CCCcc---------
Q 003972 506 GSDDMCHVCGDG-----ENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQGH------------SSSMS--------- 559 (782)
Q Consensus 506 ~ndd~C~vCgdg-----G~Ll~Cd~Cp~afH~~CL~~~~vP~g~W~C~~C~~~~------------~~~~s--------- 559 (782)
+-|+.|.+|... ..+++||+|.-+.|+.|+++..+|+|.|+|..|..+. .+.+.
T Consensus 191 ~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~f~peG~WlCrkCi~~~~~i~~C~fCps~dGaFkqT~dgrW~H 270 (669)
T COG5141 191 EFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQFLPEGFWLCRKCIYGEYQIRCCSFCPSSDGAFKQTSDGRWGH 270 (669)
T ss_pred hhhhhhHhccccccCCcceEEEecCcchhhhhhcccceecCcchhhhhhhcccccceeEEEeccCCCCceeeccCCchHh
Confidence 356788888653 4699999999999999999999999999999996621 11110
Q ss_pred ------------------ccccccCCCCCCCccccCccccCCCCCCCcccCCCCccccC--CCCCccccccCCCCCCCCc
Q 003972 560 ------------------RSVDLKGGLEAPGAEVGGCVICRSHDFSAATFDDRTVIYCD--QCEKEFHVGCLRKNGLCDL 619 (782)
Q Consensus 560 ------------------~pi~l~r~~k~~~~e~~~C~vC~~~d~s~~~~~~~~lL~Cd--qCer~yHv~CL~~~g~~~L 619 (782)
+||+....+..... --.|.+|++. .++.++|. .|-++||++|.+..|+-++
T Consensus 271 ~iCA~~~pelsF~~l~~~dpI~~i~sVs~srw-kl~C~iCk~~--------~GtcIqCs~~nC~~aYHVtCArrag~f~~ 341 (669)
T COG5141 271 VICAMFNPELSFGHLLSKDPIDNIASVSSSRW-KLGCLICKEF--------GGTCIQCSYFNCTRAYHVTCARRAGYFDL 341 (669)
T ss_pred HhHHHhcchhccccccccchhhhhcccchhhH-hheeeEEccc--------Ccceeeecccchhhhhhhhhhhhcchhhh
Confidence 12211100000000 1369999974 58899998 6999999999999887666
Q ss_pred ccc
Q 003972 620 KEI 622 (782)
Q Consensus 620 ~ei 622 (782)
+.+
T Consensus 342 ~~~ 344 (669)
T COG5141 342 NIY 344 (669)
T ss_pred hhh
Confidence 533
No 5
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=98.48 E-value=6.6e-08 Score=117.82 Aligned_cols=106 Identities=31% Similarity=0.705 Sum_probs=75.1
Q ss_pred CCCcccccccCCC-----CceeecCCCCCcccccccCCCCCCCCCccCcCCCCCCCCCc------------c--------
Q 003972 505 GGSDDMCHVCGDG-----ENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQGHSSSM------------S-------- 559 (782)
Q Consensus 505 ~~ndd~C~vCgdg-----G~Ll~Cd~Cp~afH~~CL~~~~vP~g~W~C~~C~~~~~~~~------------s-------- 559 (782)
.+.|..|.||.++ ..+++||+|..++|+.|++.+-+|+|.|.|..|....++.+ .
T Consensus 216 ~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~~~~v~c~~cp~~~gAFkqt~dgrw~ 295 (1051)
T KOG0955|consen 216 LEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFIPEGQWLCRRCLQSPQRPVRCLLCPSKGGAFKQTDDGRWA 295 (1051)
T ss_pred cCCCccceeecccccCCCceEEEcCCCcchhhhhccCCCCCCCCcEeehhhccCcCcccceEeccCCCCcceeccCCcee
Confidence 3667899999876 36999999999999999999999999999999977322111 0
Q ss_pred -------------------ccccccCCCCCCCccccCccccCCCCCCCcccCCCCccccC--CCCCccccccCCCCCCCC
Q 003972 560 -------------------RSVDLKGGLEAPGAEVGGCVICRSHDFSAATFDDRTVIYCD--QCEKEFHVGCLRKNGLCD 618 (782)
Q Consensus 560 -------------------~pi~l~r~~k~~~~e~~~C~vC~~~d~s~~~~~~~~lL~Cd--qCer~yHv~CL~~~g~~~ 618 (782)
+||..++.+.... -.-.|++|+..+ .+..++|. .|-.+||+.|.+..|+..
T Consensus 296 Hv~caiwipev~F~nt~~~E~I~~i~~i~~aR-wkL~cy~cK~~~-------~gaciqcs~~~c~~a~hvtca~~agl~m 367 (1051)
T KOG0955|consen 296 HVVCAIWIPEVSFANTVFLEPIDSIENIPPAR-WKLTCYICKQKG-------LGACIQCSKANCYTAFHVTCARRAGLYM 367 (1051)
T ss_pred eeehhhcccccccccchhhccccchhcCcHhh-hhceeeeeccCC-------CCcceecchhhhhhhhhhhhHhhcCceE
Confidence 1111111110000 012699999753 47778887 688899999999988653
No 6
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.44 E-value=6.6e-08 Score=111.22 Aligned_cols=93 Identities=31% Similarity=0.948 Sum_probs=75.8
Q ss_pred CcccccccCCC-----CceeecCCCCCcccccccCC---CCCCCCCccCcCCCCCCCCCccccccccCCCCCCCccccCc
Q 003972 507 SDDMCHVCGDG-----ENLLLCNGCPLAFHAACLDP---LLIPESGWRCPNCRQGHSSSMSRSVDLKGGLEAPGAEVGGC 578 (782)
Q Consensus 507 ndd~C~vCgdg-----G~Ll~Cd~Cp~afH~~CL~~---~~vP~g~W~C~~C~~~~~~~~s~pi~l~r~~k~~~~e~~~C 578 (782)
...+|.+|+.. |.|+.|..|...||..|+.. ..+-.+.|.|+.|+. |
T Consensus 17 ~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crv-------------------------C 71 (694)
T KOG4443|consen 17 VCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRV-------------------------C 71 (694)
T ss_pred hhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCcee-------------------------e
Confidence 45678888654 56999999999999999995 223345599999986 8
Q ss_pred cccCCCCCCCcccCCCCccccCCCCCccccccCCCCCCCCccccCCCCcEEcCCchh
Q 003972 579 VICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNR 635 (782)
Q Consensus 579 ~vC~~~d~s~~~~~~~~lL~CdqCer~yHv~CL~~~g~~~L~eiP~g~WFCc~~C~~ 635 (782)
..|+..+ +....++|+.|+-.||.+|..| +++.+|.|.|+| +.|..
T Consensus 72 e~c~~~g------D~~kf~~Ck~cDvsyh~yc~~P----~~~~v~sg~~~c-kk~~~ 117 (694)
T KOG4443|consen 72 EACGTTG------DPKKFLLCKRCDVSYHCYCQKP----PNDKVPSGPWLC-KKCTR 117 (694)
T ss_pred eeccccC------CcccccccccccccccccccCC----ccccccCccccc-HHHHh
Confidence 8998554 5778899999999999999998 789999999999 44433
No 7
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=98.36 E-value=1.5e-07 Score=109.07 Aligned_cols=104 Identities=28% Similarity=0.705 Sum_probs=74.9
Q ss_pred CCcccccccCCC-----CceeecCCCCCcccccccCCCCCCCCCccCcCCCCCC---------CCCccccc----c---c
Q 003972 506 GSDDMCHVCGDG-----ENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQGH---------SSSMSRSV----D---L 564 (782)
Q Consensus 506 ~ndd~C~vCgdg-----G~Ll~Cd~Cp~afH~~CL~~~~vP~g~W~C~~C~~~~---------~~~~s~pi----~---l 564 (782)
+++..|.+|..+ .+|++||.|....|+.|+++..+|+|.|.|..|..+. .+++..|. . +
T Consensus 269 dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIle~p~gpWlCr~Calg~~ppCvLCPkkGGamK~~~sgT~wAHv 348 (893)
T KOG0954|consen 269 DEDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGILEVPEGPWLCRTCALGIEPPCVLCPKKGGAMKPTKSGTKWAHV 348 (893)
T ss_pred cccceeceecCCCccccceeEEeccchhHHHHhhhceeecCCCCeeehhccccCCCCeeeccccCCcccccCCCCeeeEe
Confidence 578899999754 5899999999999999999999999999999997631 12222222 0 0
Q ss_pred cCCCCCCCccc---------------------cCccccCCCCCCCcccCCCCccccC--CCCCccccccCCCCCCC
Q 003972 565 KGGLEAPGAEV---------------------GGCVICRSHDFSAATFDDRTVIYCD--QCEKEFHVGCLRKNGLC 617 (782)
Q Consensus 565 ~r~~k~~~~e~---------------------~~C~vC~~~d~s~~~~~~~~lL~Cd--qCer~yHv~CL~~~g~~ 617 (782)
...++.|+... -.|.+|+.. -+..|+|. .|...||+.|...+|+.
T Consensus 349 sCALwIPEVsie~~ekmePItkfs~IpesRwslvC~LCk~k--------~GACIqCs~k~C~t~fHv~CA~~aG~~ 416 (893)
T KOG0954|consen 349 SCALWIPEVSIECPEKMEPITKFSHIPESRWSLVCNLCKVK--------SGACIQCSNKTCRTAFHVTCAFEAGLE 416 (893)
T ss_pred eeeeccceeeccCHhhcCcccccCCCcHHHHHHHHHHhccc--------CcceEEecccchhhhccchhhhhcCCe
Confidence 11122222111 149999864 46778886 89999999999998874
No 8
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.29 E-value=5e-07 Score=103.96 Aligned_cols=51 Identities=35% Similarity=0.936 Sum_probs=42.4
Q ss_pred CccccCCCCCCCcccCCCCccccCCCCCccccccCCCCCCCCccccCCCCcEEcCCchhH
Q 003972 577 GCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNRI 636 (782)
Q Consensus 577 ~C~vC~~~d~s~~~~~~~~lL~CdqCer~yHv~CL~~~g~~~L~eiP~g~WFCc~~C~~i 636 (782)
.|..|++.+ .| ..+|+||.|++.||..||.|. + ..+.+|.|.||| +.|...
T Consensus 255 fCsaCn~~~----~F--~~~i~CD~Cp~sFH~~CLePP-l-~~eniP~g~W~C-~ec~~k 305 (613)
T KOG4299|consen 255 FCSACNGSG----LF--NDIICCDGCPRSFHQTCLEPP-L-EPENIPPGSWFC-PECKIK 305 (613)
T ss_pred HHHHhCCcc----cc--ccceeecCCchHHHHhhcCCC-C-CcccCCCCcccc-CCCeee
Confidence 699999764 33 678999999999999999983 2 367899999999 888754
No 9
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=98.11 E-value=3.2e-06 Score=83.82 Aligned_cols=94 Identities=27% Similarity=0.648 Sum_probs=60.2
Q ss_pred cccccC---C---CCceeecCCCCCcccccccCCC--------CCCCC--CccCcCCCCCCCCCccccccccCCCCCCCc
Q 003972 510 MCHVCG---D---GENLLLCNGCPLAFHAACLDPL--------LIPES--GWRCPNCRQGHSSSMSRSVDLKGGLEAPGA 573 (782)
Q Consensus 510 ~C~vCg---d---gG~Ll~Cd~Cp~afH~~CL~~~--------~vP~g--~W~C~~C~~~~~~~~s~pi~l~r~~k~~~~ 573 (782)
.|.+|+ + -|.|+.|.+|-.+||..||++. .+.++ -..|.+|..- .+......-
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~-----------~~kKD~~aP 69 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGI-----------AHKKDPRAP 69 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcCh-----------hhcccCCCC
Confidence 377774 2 3789999999999999999982 22233 3588888641 111111112
Q ss_pred cccCccccCCCCCCCccc--------------------------------CCCCccccCCCCCccccccCCCC
Q 003972 574 EVGGCVICRSHDFSAATF--------------------------------DDRTVIYCDQCEKEFHVGCLRKN 614 (782)
Q Consensus 574 e~~~C~vC~~~d~s~~~~--------------------------------~~~~lL~CdqCer~yHv~CL~~~ 614 (782)
..+.|..|+..+.+-..| .+..|..|..|.|+||...|.+.
T Consensus 70 ~~~~C~~C~~~G~~c~pfr~r~T~kQEe~~ReeNgG~DPit~Vd~~lvnN~~nVLFRC~~C~RawH~~HLP~~ 142 (175)
T PF15446_consen 70 HHGMCQQCKKPGPSCKPFRPRKTPKQEEKLREENGGVDPITPVDPELVNNPDNVLFRCTSCHRAWHFEHLPPP 142 (175)
T ss_pred CCCcccccCCCCCCCcccCCCCCcHHHHHHHHHcCCCCCCccCCHHHccChhheEEecCCccceeehhhCCCC
Confidence 334566666654332111 13556789999999999999764
No 10
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.99 E-value=1.9e-06 Score=99.33 Aligned_cols=45 Identities=40% Similarity=1.178 Sum_probs=41.0
Q ss_pred cccccccCCCCce---eecCCCCCcccccccCC----CCCCCCCccCcCCCC
Q 003972 508 DDMCHVCGDGENL---LLCNGCPLAFHAACLDP----LLIPESGWRCPNCRQ 552 (782)
Q Consensus 508 dd~C~vCgdgG~L---l~Cd~Cp~afH~~CL~~----~~vP~g~W~C~~C~~ 552 (782)
.++|..|+..|.. +|||+||++||+.||.| ..+|.|.|+|+.|..
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~ 304 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKI 304 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCee
Confidence 5699999998866 99999999999999997 468999999999976
No 11
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.95 E-value=2.2e-06 Score=90.43 Aligned_cols=83 Identities=23% Similarity=0.553 Sum_probs=60.5
Q ss_pred eeCCcEEcCCCCCccCccccccccCccccCCCccceeccCCCchhHHHHHHhhcCCCCCCCCcccccccCCC---Cceee
Q 003972 446 KQGNGIVCDCCNKEISPSQFEAHAGMAARRQPYRHIYTSNGMTLHDIAISLAMGQRRTTGGSDDMCHVCGDG---ENLLL 522 (782)
Q Consensus 446 ~qg~GI~C~cC~~~~Sps~FE~hAG~~~~r~Py~~I~l~~G~sL~~la~~l~~~~~~~~~~ndd~C~vCgdg---G~Ll~ 522 (782)
+.-+.|+|..|....+|+..+..-.+..--+.| .+..-+...|.+|+.+ .++++
T Consensus 275 r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY-----------------------~W~C~~C~lC~IC~~P~~E~E~~F 331 (381)
T KOG1512|consen 275 RRNSWIVCKPCATRPHPYCVAMIPELVGQYKTY-----------------------FWKCSSCELCRICLGPVIESEHLF 331 (381)
T ss_pred hhccceeecccccCCCCcchhcCHHHHhHHhhc-----------------------chhhcccHhhhccCCcccchheec
Confidence 445789999999888888766542221110111 1122346679999875 68999
Q ss_pred cCCCCCcccccccCCCCCCCCCccCc-CCC
Q 003972 523 CNGCPLAFHAACLDPLLIPESGWRCP-NCR 551 (782)
Q Consensus 523 Cd~Cp~afH~~CL~~~~vP~g~W~C~-~C~ 551 (782)
||.|+++||+.|.++..+|.|.|.|. .|.
T Consensus 332 CD~CDRG~HT~CVGL~~lP~G~WICD~~C~ 361 (381)
T KOG1512|consen 332 CDVCDRGPHTLCVGLQDLPRGEWICDMRCR 361 (381)
T ss_pred cccccCCCCccccccccccCccchhhhHHH
Confidence 99999999999999999999999998 454
No 12
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=97.93 E-value=6.2e-06 Score=93.24 Aligned_cols=131 Identities=19% Similarity=0.344 Sum_probs=85.4
Q ss_pred CcccccccCC-----CCceeecCCCCCcccccccCCCCCCCCCccCcCCCCC--CCCCcc----ccc------cccCCCC
Q 003972 507 SDDMCHVCGD-----GENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQG--HSSSMS----RSV------DLKGGLE 569 (782)
Q Consensus 507 ndd~C~vCgd-----gG~Ll~Cd~Cp~afH~~CL~~~~vP~g~W~C~~C~~~--~~~~~s----~pi------~l~r~~k 569 (782)
..-.|.+|.. +.++..|+.|.++||+.|..+.....+.|.+..|... ...+.+ +.+ ...++.+
T Consensus 82 ~e~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~~~~~~~~~~~~c~~~~~~~~g~a~K~g~~a~~~l~y~~~~l~w 161 (464)
T KOG4323|consen 82 SELNPNVLTSETVLPENEKVICGRCKSGYHQGCNIPRFPSLDIGESTECVFPIFSQEGGALKKGRLARPSLPYPEASLDW 161 (464)
T ss_pred cccCCcccccccccCchhhhhhhhhccCcccccCccCcCcCCccccccccccccccccccccccccccccccCccccccc
Confidence 4455677754 4578899999999999999987777889999998762 111111 111 1112221
Q ss_pred C--CCccccCccccCCCCCCCcccCCCCccccCCCCCccccccCCCCCCCCccccCCCCcEEcCCchhHHHHHHhh
Q 003972 570 A--PGAEVGGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNRIHAALQDF 643 (782)
Q Consensus 570 ~--~~~e~~~C~vC~~~d~s~~~~~~~~lL~CdqCer~yHv~CL~~~g~~~L~eiP~g~WFCc~~C~~i~~~Lqkl 643 (782)
+ +..+.. |.+|...... ....||+|+.|..|||..|+++.-...+..-|..+||| ..|.+-...+..+
T Consensus 162 D~~~~~n~q-c~vC~~g~~~----~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C-~~C~~~~~~~~r~ 231 (464)
T KOG4323|consen 162 DSGHKVNLQ-CSVCYCGGPG----AGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFC-DVCNRGPKKVPRL 231 (464)
T ss_pred Cccccccce-eeeeecCCcC----ccceeeeecccccHHHHHhccCCCCHhhccCccceEee-hhhccchhhcccc
Confidence 1 223333 8898865321 24489999999999999999875433344557889999 6776554444333
No 13
>smart00258 SAND SAND domain.
Probab=97.90 E-value=5.3e-06 Score=72.18 Aligned_cols=62 Identities=26% Similarity=0.347 Sum_probs=53.9
Q ss_pred eEE-EECCEEeeeeEeeCCcEEcCCC-CCccCccccccccCccccCCCccceeccCCCchhHHHH
Q 003972 432 LTY-IVKGQRLRFGCKQGNGIVCDCC-NKEISPSQFEAHAGMAARRQPYRHIYTSNGMTLHDIAI 494 (782)
Q Consensus 432 v~Y-~~kGq~~l~G~~qg~GI~C~cC-~~~~Sps~FE~hAG~~~~r~Py~~I~l~~G~sL~~la~ 494 (782)
|++ .++|.++++.+++|...+|+.+ ++||||++||.+||+...++|..+|+ .+|.+|..+..
T Consensus 5 V~CG~~~g~L~~~kf~~G~~~kCI~~~~~~~TP~eFe~~~g~~~~K~WK~sIR-~~g~~Lr~L~~ 68 (73)
T smart00258 5 VTCGTVKGILYKKKFKCGISVKCIQYEDKWFTPKEFEIEGGKGKSKDWKRSIR-CGGSSLRTLME 68 (73)
T ss_pred eeeCCeeeeeeHhhhhcCcccCCccCCCEEEChHHHHhhcCCcccCCcchhee-ECCccHHHHHH
Confidence 555 5788999999999888899965 68999999999999988899999997 89999988764
No 14
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.88 E-value=3e-06 Score=67.94 Aligned_cols=48 Identities=35% Similarity=1.019 Sum_probs=36.6
Q ss_pred ccccCCCCCCCcccCCCCccccCCCCCccccccCCCCCCCCccccCCCCcEEcCCch
Q 003972 578 CVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCN 634 (782)
Q Consensus 578 C~vC~~~d~s~~~~~~~~lL~CdqCer~yHv~CL~~~g~~~L~eiP~g~WFCc~~C~ 634 (782)
|.+|++.+ +++.+|+|+.|.++||..|+.+.. ...+.+.+.|+| +.|.
T Consensus 2 C~vC~~~~------~~~~~i~C~~C~~~~H~~C~~~~~--~~~~~~~~~w~C-~~C~ 49 (51)
T PF00628_consen 2 CPVCGQSD------DDGDMIQCDSCNRWYHQECVGPPE--KAEEIPSGDWYC-PNCR 49 (51)
T ss_dssp BTTTTSSC------TTSSEEEBSTTSCEEETTTSTSSH--SHHSHHSSSBSS-HHHH
T ss_pred CcCCCCcC------CCCCeEEcCCCChhhCcccCCCCh--hhccCCCCcEEC-cCCc
Confidence 78898743 578899999999999999998732 122445569999 6665
No 15
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.88 E-value=5e-06 Score=96.13 Aligned_cols=104 Identities=27% Similarity=0.612 Sum_probs=71.4
Q ss_pred CcccccccC---CCCceeecCCCCCcccccccCC--CCCCCCCccCcCCCCCCCCCccccc---ccc--CCCCCCCcccc
Q 003972 507 SDDMCHVCG---DGENLLLCNGCPLAFHAACLDP--LLIPESGWRCPNCRQGHSSSMSRSV---DLK--GGLEAPGAEVG 576 (782)
Q Consensus 507 ndd~C~vCg---dgG~Ll~Cd~Cp~afH~~CL~~--~~vP~g~W~C~~C~~~~~~~~s~pi---~l~--r~~k~~~~e~~ 576 (782)
....|..|+ |...+++|+.|+.+||.+|..| ..++.|.|+|+.|..+++....-|- ++. .+...+.....
T Consensus 67 ~crvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c~qc~~~lpg~s~~~~~~~~~~~~c~s~~ 146 (694)
T KOG4443|consen 67 SCRVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTRCRQCDSTLPGLSLDLQEGYLQCAPCASLS 146 (694)
T ss_pred CceeeeeccccCCcccccccccccccccccccCCccccccCcccccHHHHhhhhccccccccchhhhccCcccccccccc
Confidence 445677776 5567999999999999999998 6799999999999775444332221 221 23333444455
Q ss_pred CccccCCCCCCCcccCCCCccccCCCCCccccccCCC
Q 003972 577 GCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRK 613 (782)
Q Consensus 577 ~C~vC~~~d~s~~~~~~~~lL~CdqCer~yHv~CL~~ 613 (782)
.|.+|....... +.-.++.|++|.+|-|-.|..-
T Consensus 147 ~cPvc~~~Y~~~---e~~~~~~c~~c~rwsh~~c~~~ 180 (694)
T KOG4443|consen 147 YCPVCLIVYQDS---ESLPMVCCSICQRWSHGGCDGI 180 (694)
T ss_pred cCchHHHhhhhc---cchhhHHHHHhcccccCCCCcc
Confidence 677777643111 1233489999999999999754
No 16
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=97.84 E-value=4.3e-06 Score=87.95 Aligned_cols=47 Identities=34% Similarity=0.954 Sum_probs=40.0
Q ss_pred CCcccccccCCC---CceeecCCCCCcccccccCC--CCCCCCCccCcCCCC
Q 003972 506 GSDDMCHVCGDG---ENLLLCNGCPLAFHAACLDP--LLIPESGWRCPNCRQ 552 (782)
Q Consensus 506 ~ndd~C~vCgdg---G~Ll~Cd~Cp~afH~~CL~~--~~vP~g~W~C~~C~~ 552 (782)
.....|.+||.. ++||+||.|++.||++||.| ...|+|.|.|..|..
T Consensus 279 ieck~csicgtsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~ 330 (336)
T KOG1244|consen 279 IECKYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLE 330 (336)
T ss_pred eecceeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHH
Confidence 456778999854 57999999999999999998 456899999999954
No 17
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.77 E-value=1.3e-05 Score=94.92 Aligned_cols=88 Identities=33% Similarity=0.793 Sum_probs=66.1
Q ss_pred CCCCcccccccCC--CCCCCCCccCcCCCCC-CCCCccccccccCCCCCCCccccCccccCCCCCCCcccCCCCccccCC
Q 003972 525 GCPLAFHAACLDP--LLIPESGWRCPNCRQG-HSSSMSRSVDLKGGLEAPGAEVGGCVICRSHDFSAATFDDRTVIYCDQ 601 (782)
Q Consensus 525 ~Cp~afH~~CL~~--~~vP~g~W~C~~C~~~-~~~~~s~pi~l~r~~k~~~~e~~~C~vC~~~d~s~~~~~~~~lL~Cdq 601 (782)
.|+|+||..|+.+ ...|+++|.|+.|... .+....+ ......+...|.+|+. .++++.|+.
T Consensus 1 ~~~r~~~~~~~~p~~~~~~~~~~k~~~~e~~~~~~~~~~-------~~~~~~~~e~c~ic~~---------~g~~l~c~t 64 (696)
T KOG0383|consen 1 TCPRAYHRVCLDPKLKEEPEMDPKCPGCESSSAQVEAKD-------DDWDDAEQEACRICAD---------GGELLWCDT 64 (696)
T ss_pred CCCcccCcCCCCcccccCCcCCccCcchhhccccccccc-------CCcchhhhhhhhhhcC---------CCcEEEecc
Confidence 4899999999998 4456899999999641 1110000 0012334568999994 578999999
Q ss_pred CCCccccccCCCCCCCCccccCCCCcEEcCCc
Q 003972 602 CEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDC 633 (782)
Q Consensus 602 Cer~yHv~CL~~~g~~~L~eiP~g~WFCc~~C 633 (782)
|..+||..|+.+ ++...|.++|.| +-|
T Consensus 65 C~~s~h~~cl~~----pl~~~p~~~~~c-~Rc 91 (696)
T KOG0383|consen 65 CPASFHASCLGP----PLTPQPNGEFIC-PRC 91 (696)
T ss_pred ccHHHHHHccCC----CCCcCCccceee-eee
Confidence 999999999988 788899989999 477
No 18
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=97.75 E-value=6.6e-06 Score=99.15 Aligned_cols=127 Identities=21% Similarity=0.383 Sum_probs=89.3
Q ss_pred CCcccccccCCCCceeecCCCCCcccccccCC--CCCCCCCccCcCCCCCCCCCcc----cc---ccccCCC--------
Q 003972 506 GSDDMCHVCGDGENLLLCNGCPLAFHAACLDP--LLIPESGWRCPNCRQGHSSSMS----RS---VDLKGGL-------- 568 (782)
Q Consensus 506 ~ndd~C~vCgdgG~Ll~Cd~Cp~afH~~CL~~--~~vP~g~W~C~~C~~~~~~~~s----~p---i~l~r~~-------- 568 (782)
.-+|.|.+|.+.|.++||..||+-||..|..+ ..+|+..|.|..|..+.-..+. .+ ...+|..
T Consensus 342 ~~ddhcrf~~d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~hkvngvvd~vl~~~K~~~~iR~~~iG~dr~g 421 (1414)
T KOG1473|consen 342 EYDDHCRFCHDLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIHKVNGVVDCVLPPSKNVDSIRHTPIGRDRYG 421 (1414)
T ss_pred eecccccccCcccceeecccCCceEEeeecCCccccCCCccchhhhhhhhccCcccccccChhhcccceeccCCCcCccc
Confidence 45789999999999999999999999999997 5689999999999762211111 00 0111111
Q ss_pred CCCCccccCccccCCCCCCCcccCCCCccccCC-CCCcccc-ccCCCCCCCCccccCCCCcEEcCCchhHHHHHHhhh
Q 003972 569 EAPGAEVGGCVICRSHDFSAATFDDRTVIYCDQ-CEKEFHV-GCLRKNGLCDLKEIPKDKWFCCDDCNRIHAALQDFV 644 (782)
Q Consensus 569 k~~~~e~~~C~vC~~~d~s~~~~~~~~lL~Cdq-Cer~yHv-~CL~~~g~~~L~eiP~g~WFCc~~C~~i~~~Lqkll 644 (782)
..-+.....|.||+. +++++.|+. |.+.||. .|+...-. -..++.+-|+| .+|-.-.++|...+
T Consensus 422 r~ywfi~rrl~Ie~~---------det~l~yysT~pqly~ll~cLd~~~~--e~~L~d~i~~~-~ee~~rqM~lT~~l 487 (1414)
T KOG1473|consen 422 RKYWFISRRLRIEGM---------DETLLWYYSTCPQLYHLLRCLDRTYV--EMYLCDGIWER-REEIIRQMGLTEEL 487 (1414)
T ss_pred cchhceeeeeEEecC---------CCcEEEEecCcHHHHHHHHHhchHHH--HHhhccchhhh-HHHHHHhccchhhh
Confidence 111122346999984 567889986 9999999 99974211 24688999999 88876665554443
No 19
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.72 E-value=1.3e-05 Score=93.57 Aligned_cols=54 Identities=39% Similarity=0.978 Sum_probs=47.3
Q ss_pred ccccCccccCCCCCCCcccCCCCccccCCCCCc-cccccCCCCCCCCccccCCCCcEEcCCchhHH
Q 003972 573 AEVGGCVICRSHDFSAATFDDRTVIYCDQCEKE-FHVGCLRKNGLCDLKEIPKDKWFCCDDCNRIH 637 (782)
Q Consensus 573 ~e~~~C~vC~~~d~s~~~~~~~~lL~CdqCer~-yHv~CL~~~g~~~L~eiP~g~WFCc~~C~~i~ 637 (782)
.+...|.+|...| .++.||+||.|... ||++||++ +|.++|-+.||| .+|.-+.
T Consensus 213 ~E~~~C~IC~~~D------pEdVLLLCDsCN~~~YH~YCLDP----dl~eiP~~eWYC-~NC~dL~ 267 (1134)
T KOG0825|consen 213 QEEVKCDICTVHD------PEDVLLLCDSCNKVYYHVYCLDP----DLSESPVNEWYC-TNCSLLE 267 (1134)
T ss_pred cccccceeeccCC------hHHhheeecccccceeeccccCc----ccccccccceec-Ccchhhh
Confidence 3456799999886 46789999999998 99999999 899999999999 9998653
No 21
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.69 E-value=8.7e-06 Score=65.28 Aligned_cols=42 Identities=40% Similarity=1.170 Sum_probs=35.2
Q ss_pred cccccCC---CCceeecCCCCCcccccccCCC----CCCCCCccCcCCC
Q 003972 510 MCHVCGD---GENLLLCNGCPLAFHAACLDPL----LIPESGWRCPNCR 551 (782)
Q Consensus 510 ~C~vCgd---gG~Ll~Cd~Cp~afH~~CL~~~----~vP~g~W~C~~C~ 551 (782)
+|.+|+. .+++|.|+.|.+.||..|+++. ..+.+.|+|+.|.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 4778876 6789999999999999999984 3345699999995
No 22
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.59 E-value=3.6e-05 Score=91.38 Aligned_cols=47 Identities=40% Similarity=1.062 Sum_probs=41.3
Q ss_pred CCcccccccCCCCceeecCCCCCcccccccCC--CCCCCCCccCcCCCC
Q 003972 506 GSDDMCHVCGDGENLLLCNGCPLAFHAACLDP--LLIPESGWRCPNCRQ 552 (782)
Q Consensus 506 ~ndd~C~vCgdgG~Ll~Cd~Cp~afH~~CL~~--~~vP~g~W~C~~C~~ 552 (782)
.+...|.+|+++|++++||.|+.+||..|+++ ...|.+.|.|+.|..
T Consensus 45 ~~~e~c~ic~~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~ 93 (696)
T KOG0383|consen 45 AEQEACRICADGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFC 93 (696)
T ss_pred hhhhhhhhhcCCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeecc
Confidence 45678999999999999999999999999997 456677799999954
No 24
>PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control. These include proteins linked to various human diseases, such as the Sp100 (Speckled protein 100 kDa), NUDR (Nuclear DEAF-1 related), GMEB (Glucocorticoid Modulatory Element Binding) proteins and AIRE-1 (Autoimmune regulator 1) proteins. Proteins containing the SAND domain have a modular structure; the SAND domain can be associated with a number of other modules, including the bromodomain, the PHD finger and the MYND finger. Because no SAND domain has been found in yeast, it is thought that the SAND domain could be restricted to animal phyla. Many SAND domain-containing proteins, including NUDR, DEAF-1 (Deformed epidermal autoregulatory factor-1) and GMEB, have been shown to bind DNA sequences specifically. The SAND domain has been proposed to mediate the DNA binding activity of these proteins [, ]. The resolution of the 3D structure of the SAND domain from Sp100b has revealed that it consists of a novel alpha/beta fold. The SAND domain adopts a compact fold consisting of a strongly twisted, five-stranded antiparallel beta-sheet with four alpha-helices packing against one side of the beta-sheet. The opposite side of the beta-sheet is solvent exposed. The beta-sheet and alpha-helical parts of the structure form two distinct regions. Multiple hydrophobic residues pack between these regions to form a structural core. A conserved KDWK sequence motif is found within the alpha-helical, positively charged surface patch. The DNA binding surface has been mapped to the alpha-helical region encompassing the KDWK motif [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1OQJ_B 1UFN_A 1H5P_A.
Probab=97.46 E-value=1.1e-05 Score=71.87 Aligned_cols=62 Identities=29% Similarity=0.319 Sum_probs=49.4
Q ss_pred eEE-EECCEEeeeeE-eeCCcEEcCC-CCCccCccccccccCccccCCCccceeccCCCchhHHHH
Q 003972 432 LTY-IVKGQRLRFGC-KQGNGIVCDC-CNKEISPSQFEAHAGMAARRQPYRHIYTSNGMTLHDIAI 494 (782)
Q Consensus 432 v~Y-~~kGq~~l~G~-~qg~GI~C~c-C~~~~Sps~FE~hAG~~~~r~Py~~I~l~~G~sL~~la~ 494 (782)
|++ .++|.++++-+ ++|...+|+. -+.||||++||.|||+.+.++|+.+|+ .+|.||..+..
T Consensus 13 VtCG~~~G~L~~~k~~~~g~~~kCI~~~g~~~TP~eFE~~~G~~~sK~WK~SIr-~~g~~L~~li~ 77 (82)
T PF01342_consen 13 VTCGDVKGTLYKKKFVKQGICGKCIQCEGRWFTPSEFERHGGKGSSKDWKRSIR-CGGEPLGKLIE 77 (82)
T ss_dssp EEETTEEEEEEHHHH-TTGTTSS-EEETTEEE-HHHHHHHHTTCTCS-HHHHSE-ETTEEHHHHHH
T ss_pred eEeCCeEEEEEHHHhhcccccCceEeeCCcEECHHHHHhhcCcccCCCCCccEE-ECCEEHHHHHh
Confidence 777 57788888877 7777777874 378999999999999999999999998 59999987753
No 25
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.28 E-value=9.6e-05 Score=79.58 Aligned_cols=43 Identities=28% Similarity=0.787 Sum_probs=38.6
Q ss_pred ccccccCCCCceeecCC--CC-CcccccccCCCCCCCCCccCcCCCC
Q 003972 509 DMCHVCGDGENLLLCNG--CP-LAFHAACLDPLLIPESGWRCPNCRQ 552 (782)
Q Consensus 509 d~C~vCgdgG~Ll~Cd~--Cp-~afH~~CL~~~~vP~g~W~C~~C~~ 552 (782)
.+|. |...|+++-||. |+ .-||..|+++...|.|.|||+.|..
T Consensus 222 C~Cn-qvsyg~Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~ 267 (274)
T KOG1973|consen 222 CICN-QVSYGKMIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKA 267 (274)
T ss_pred EEec-ccccccccccCCCCCCcceEEEeccccccCCCCcccchhhhh
Confidence 3455 677899999998 99 8999999999999999999999975
No 26
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.26 E-value=0.00012 Score=76.99 Aligned_cols=45 Identities=38% Similarity=1.063 Sum_probs=37.4
Q ss_pred CccccCCCCCCCcccCCCCccccC--CCCC-ccccccCCCCCCCCccccCCCCcEEcCCchhH
Q 003972 577 GCVICRSHDFSAATFDDRTVIYCD--QCEK-EFHVGCLRKNGLCDLKEIPKDKWFCCDDCNRI 636 (782)
Q Consensus 577 ~C~vC~~~d~s~~~~~~~~lL~Cd--qCer-~yHv~CL~~~g~~~L~eiP~g~WFCc~~C~~i 636 (782)
+| +|.+. .-+.|+.|| .|++ |||..|+ .|++.|+|.||| ++|+..
T Consensus 223 YC-fCqqv-------SyGqMVaCDn~nCkrEWFH~~CV------GLk~pPKG~WYC-~eCk~~ 270 (271)
T COG5034 223 YC-FCQQV-------SYGQMVACDNANCKREWFHLECV------GLKEPPKGKWYC-PECKKA 270 (271)
T ss_pred EE-Eeccc-------ccccceecCCCCCchhheecccc------ccCCCCCCcEeC-HHhHhc
Confidence 45 57765 357899999 7997 9999999 689999999999 999753
No 27
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.09 E-value=0.0002 Score=77.13 Aligned_cols=37 Identities=41% Similarity=0.983 Sum_probs=32.1
Q ss_pred CCCCccccCC--CC-CccccccCCCCCCCCccccCCCCcEEcCCchh
Q 003972 592 DDRTVIYCDQ--CE-KEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNR 635 (782)
Q Consensus 592 ~~~~lL~Cdq--Ce-r~yHv~CL~~~g~~~L~eiP~g~WFCc~~C~~ 635 (782)
..+.|+.||. |+ .|||..|+ .|+.-|.|.||| +.|..
T Consensus 228 syg~Mi~CDn~~C~~eWFH~~CV------GL~~~PkgkWyC-~~C~~ 267 (274)
T KOG1973|consen 228 SYGKMIGCDNPGCPIEWFHFTCV------GLKTKPKGKWYC-PRCKA 267 (274)
T ss_pred ccccccccCCCCCCcceEEEecc------ccccCCCCcccc-hhhhh
Confidence 3578999997 99 99999999 678899999999 57754
No 28
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.97 E-value=0.00033 Score=82.38 Aligned_cols=47 Identities=36% Similarity=0.902 Sum_probs=39.7
Q ss_pred CCcccccccCCC---CceeecCCCCCc-ccccccCC--CCCCCCCccCcCCCC
Q 003972 506 GSDDMCHVCGDG---ENLLLCNGCPLA-FHAACLDP--LLIPESGWRCPNCRQ 552 (782)
Q Consensus 506 ~ndd~C~vCgdg---G~Ll~Cd~Cp~a-fH~~CL~~--~~vP~g~W~C~~C~~ 552 (782)
.....|.+|+-. +-||+||.|..+ ||.+||+| .++|-+.|||+.|..
T Consensus 213 ~E~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~d 265 (1134)
T KOG0825|consen 213 QEEVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSL 265 (1134)
T ss_pred cccccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchh
Confidence 344569999754 469999999999 99999998 459999999999965
No 29
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=96.91 E-value=0.00039 Score=73.16 Aligned_cols=45 Identities=27% Similarity=0.826 Sum_probs=37.9
Q ss_pred CcccccccCC--CCceeecCC--CCC-cccccccCCCCCCCCCccCcCCCC
Q 003972 507 SDDMCHVCGD--GENLLLCNG--CPL-AFHAACLDPLLIPESGWRCPNCRQ 552 (782)
Q Consensus 507 ndd~C~vCgd--gG~Ll~Cd~--Cp~-afH~~CL~~~~vP~g~W~C~~C~~ 552 (782)
+.-.|. |.. -|+|+-||+ |.+ .||..|+++...|.|.|||+.|+.
T Consensus 220 e~lYCf-CqqvSyGqMVaCDn~nCkrEWFH~~CVGLk~pPKG~WYC~eCk~ 269 (271)
T COG5034 220 EELYCF-CQQVSYGQMVACDNANCKREWFHLECVGLKEPPKGKWYCPECKK 269 (271)
T ss_pred ceeEEE-ecccccccceecCCCCCchhheeccccccCCCCCCcEeCHHhHh
Confidence 344564 655 489999998 877 899999999999999999999974
No 30
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=96.36 E-value=0.00068 Score=51.52 Aligned_cols=34 Identities=32% Similarity=0.977 Sum_probs=20.4
Q ss_pred CceeecCCCCCcccccccCCCCCCCC-CccCcCCC
Q 003972 518 ENLLLCNGCPLAFHAACLDPLLIPES-GWRCPNCR 551 (782)
Q Consensus 518 G~Ll~Cd~Cp~afH~~CL~~~~vP~g-~W~C~~C~ 551 (782)
..|+.|+.|..++|+.|+++..+|.+ +|+|..|+
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCCcccCCCCCcEECCcCC
Confidence 46899999999999999999888876 89999884
No 31
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=96.18 E-value=0.0019 Score=73.15 Aligned_cols=47 Identities=36% Similarity=1.008 Sum_probs=40.1
Q ss_pred cCccccCCCCCCCcccCCCCccccCCCCCccccccCCCCCCCCccccCCC----CcEEcCCc
Q 003972 576 GGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKD----KWFCCDDC 633 (782)
Q Consensus 576 ~~C~vC~~~d~s~~~~~~~~lL~CdqCer~yHv~CL~~~g~~~L~eiP~g----~WFCc~~C 633 (782)
-.|.||++.. +...+++||.|..-||.+||.| ||+.+|+. .|.| ..|
T Consensus 545 ysCgiCkks~------dQHll~~CDtC~lhYHlGCL~P----PLTR~Pkk~kn~gWqC-sEC 595 (707)
T KOG0957|consen 545 YSCGICKKST------DQHLLTQCDTCHLHYHLGCLSP----PLTRLPKKNKNFGWQC-SEC 595 (707)
T ss_pred eeeeeeccch------hhHHHhhcchhhceeeccccCC----ccccCcccccCcceee-ccc
Confidence 3599999864 4566789999999999999999 89999964 6999 888
No 32
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=95.98 E-value=0.003 Score=71.61 Aligned_cols=105 Identities=31% Similarity=0.682 Sum_probs=67.5
Q ss_pred cccccccC-----CCCceeecCCCCCcccccccCCC---CCCC-------CCccCcCCCCCCC---CC--------ccc-
Q 003972 508 DDMCHVCG-----DGENLLLCNGCPLAFHAACLDPL---LIPE-------SGWRCPNCRQGHS---SS--------MSR- 560 (782)
Q Consensus 508 dd~C~vCg-----dgG~Ll~Cd~Cp~afH~~CL~~~---~vP~-------g~W~C~~C~~~~~---~~--------~s~- 560 (782)
-.+|.||- |.|+++-||.|+...|..|++.. .+|. ..|||.-|+.+-. ++ +.+
T Consensus 119 ~~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~P~CElCPn~~GifKet 198 (707)
T KOG0957|consen 119 AVICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSLPHCELCPNRFGIFKET 198 (707)
T ss_pred ceEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCCCccccCCCcCCccccc
Confidence 34899993 46899999999999999999962 3443 4799999987321 11 100
Q ss_pred cc-cccCC---------------------CCCCC---ccccCccccCCCCCCCcccCCCCccccC--CCCCccccccCCC
Q 003972 561 SV-DLKGG---------------------LEAPG---AEVGGCVICRSHDFSAATFDDRTVIYCD--QCEKEFHVGCLRK 613 (782)
Q Consensus 561 pi-~l~r~---------------------~k~~~---~e~~~C~vC~~~d~s~~~~~~~~lL~Cd--qCer~yHv~CL~~ 613 (782)
.| ++..+ +..+. .....|.+|...-|.+ -+..+.|| .|...||+.|.+.
T Consensus 199 DigrWvH~iCALYvpGVafg~~~~l~~Vtl~em~ysk~Gak~Cs~Ced~~fAR----tGvci~CdaGMCk~YfHVTCAQk 274 (707)
T KOG0957|consen 199 DIGRWVHAICALYVPGVAFGQTHTLCGVTLEEMDYSKFGAKTCSACEDKIFAR----TGVCIRCDAGMCKEYFHVTCAQK 274 (707)
T ss_pred chhhHHHHHHHhhcCccccccccccccccHHHhhhhhhccchhccccchhhhh----cceeeeccchhhhhhhhhhHHhh
Confidence 00 10000 00011 1123599998765443 35567888 7889999999988
Q ss_pred CCC
Q 003972 614 NGL 616 (782)
Q Consensus 614 ~g~ 616 (782)
.|+
T Consensus 275 ~Gl 277 (707)
T KOG0957|consen 275 LGL 277 (707)
T ss_pred hcc
Confidence 775
No 33
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=95.96 E-value=0.0033 Score=61.98 Aligned_cols=27 Identities=44% Similarity=1.029 Sum_probs=24.2
Q ss_pred ccccccCCCCCCCCccccCCCCcEEcCCchhH
Q 003972 605 EFHVGCLRKNGLCDLKEIPKDKWFCCDDCNRI 636 (782)
Q Consensus 605 ~yHv~CL~~~g~~~L~eiP~g~WFCc~~C~~i 636 (782)
.||..||+| +|+++|+|+|+| +.|..-
T Consensus 1 g~H~~CL~P----pl~~~P~g~W~C-p~C~~~ 27 (148)
T cd04718 1 GFHLCCLRP----PLKEVPEGDWIC-PFCEVE 27 (148)
T ss_pred CcccccCCC----CCCCCCCCCcCC-CCCcCC
Confidence 599999999 899999999999 888643
No 34
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=95.63 E-value=0.0029 Score=80.91 Aligned_cols=56 Identities=34% Similarity=0.873 Sum_probs=47.6
Q ss_pred cccCccccCCCCCCCcccCCCCccccCCCCCccccccCCCCCCCCccccCCCCcEEcCCchhHHHHH
Q 003972 574 EVGGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNRIHAAL 640 (782)
Q Consensus 574 e~~~C~vC~~~d~s~~~~~~~~lL~CdqCer~yHv~CL~~~g~~~L~eiP~g~WFCc~~C~~i~~~L 640 (782)
.-..|.+|+... ....++.|+.|..+||..|+++ .+..+|.++||| +.|..-+...
T Consensus 1107 ~~~~c~~cr~k~------~~~~m~lc~~c~~~~h~~C~rp----~~~~~~~~dW~C-~~c~~e~~~r 1162 (1404)
T KOG1245|consen 1107 VNALCKVCRRKK------QDEKMLLCDECLSGFHLFCLRP----ALSSVPPGDWMC-PSCRKEHRAR 1162 (1404)
T ss_pred chhhhhhhhhcc------cchhhhhhHhhhhhHHHHhhhh----hhccCCcCCccC-Cccchhhhhh
Confidence 345799999764 4578999999999999999999 789999999999 9998776533
No 35
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=95.51 E-value=0.02 Score=49.15 Aligned_cols=44 Identities=20% Similarity=0.052 Sum_probs=38.8
Q ss_pred EEEEEeeCCEEEEEEEEEeeCceeeeeeeeccccccccccccccC
Q 003972 737 YSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 737 Y~avLe~~~evVSaA~lRv~G~~vAElPlVaT~~~~r~qG~cr~L 781 (782)
+..+++.+++||+.+.+.-.+. .+.|-.+++.++|||||+.+.|
T Consensus 4 ~~~~~~~~~~ivG~~~~~~~~~-~~~i~~~~v~~~~rg~Gig~~l 47 (79)
T PF13508_consen 4 RFFVAEDDGEIVGFIRLWPNED-FAYIGYLAVDPEYRGKGIGSKL 47 (79)
T ss_dssp EEEEEEETTEEEEEEEEEETTT-EEEEEEEEE-GGGTTSSHHHHH
T ss_pred EEEEEEECCEEEEEEEEEEcCC-EEEEEEEEECHHHcCCCHHHHH
Confidence 5778899999999999988887 8899999999999999998754
No 36
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=95.46 E-value=0.0056 Score=71.74 Aligned_cols=50 Identities=32% Similarity=1.083 Sum_probs=41.1
Q ss_pred ccCccccCCCCCCCcccCCCCccccC--CCCCccccccCCCCCCCCccccCCCCcEEcCCchh
Q 003972 575 VGGCVICRSHDFSAATFDDRTVIYCD--QCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNR 635 (782)
Q Consensus 575 ~~~C~vC~~~d~s~~~~~~~~lL~Cd--qCer~yHv~CL~~~g~~~L~eiP~g~WFCc~~C~~ 635 (782)
+++|.||-.- .+..+..++.|| .|.-+.|..|. .+.++|.|.||| ..|..
T Consensus 5 VGGCCVCSDE----rGWaeNPLVYCDG~nCsVAVHQaCY------GIvqVPtGpWfC-rKCes 56 (900)
T KOG0956|consen 5 VGGCCVCSDE----RGWAENPLVYCDGHNCSVAVHQACY------GIVQVPTGPWFC-RKCES 56 (900)
T ss_pred ccceeeecCc----CCCccCceeeecCCCceeeeehhcc------eeEecCCCchhh-hhhhh
Confidence 5789999742 244678999999 79999999999 567899999999 77754
No 37
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=95.42 E-value=0.0084 Score=74.47 Aligned_cols=51 Identities=27% Similarity=0.809 Sum_probs=40.9
Q ss_pred ccccCccccCCCCCCCcccCCCCccccCCCCCccccccCCCCCCCCccccCCCCcEEcCCch
Q 003972 573 AEVGGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCN 634 (782)
Q Consensus 573 ~e~~~C~vC~~~d~s~~~~~~~~lL~CdqCer~yHv~CL~~~g~~~L~eiP~g~WFCc~~C~ 634 (782)
..+..|.||..++ ..+-..+++||.|..++|..|.. ..-+|+|.|+| ..|.
T Consensus 217 ~~D~~C~iC~~~~----~~n~n~ivfCD~Cnl~VHq~Cyg------i~~ipeg~WlC-r~Cl 267 (1051)
T KOG0955|consen 217 EEDAVCCICLDGE----CQNSNVIVFCDGCNLAVHQECYG------IPFIPEGQWLC-RRCL 267 (1051)
T ss_pred CCCccceeecccc----cCCCceEEEcCCCcchhhhhccC------CCCCCCCcEee-hhhc
Confidence 3456799999876 22347899999999999999994 45689999999 7774
No 38
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=95.25 E-value=0.01 Score=58.57 Aligned_cols=24 Identities=46% Similarity=1.161 Sum_probs=22.0
Q ss_pred cccccccCC--CCCCCCCccCcCCCC
Q 003972 529 AFHAACLDP--LLIPESGWRCPNCRQ 552 (782)
Q Consensus 529 afH~~CL~~--~~vP~g~W~C~~C~~ 552 (782)
+||..||.| ..+|+|+|+||.|..
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~ 26 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEV 26 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcC
Confidence 599999997 779999999999976
No 39
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=94.51 E-value=0.034 Score=47.19 Aligned_cols=40 Identities=23% Similarity=0.140 Sum_probs=36.7
Q ss_pred eeCCEEEEEEEEEeeCc-----eeeeeeeeccccccccccccccC
Q 003972 742 TVKSVVVSAGLLRIFGR-----EVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 742 e~~~evVSaA~lRv~G~-----~vAElPlVaT~~~~r~qG~cr~L 781 (782)
+.+++||+.+.+++... ..+.+..+++.++|||||+.+.|
T Consensus 2 ~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L 46 (83)
T PF00583_consen 2 EEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKL 46 (83)
T ss_dssp EETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHH
T ss_pred cCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhh
Confidence 57899999999999998 49999999999999999998765
No 40
>smart00258 SAND SAND domain.
Probab=94.24 E-value=0.053 Score=47.65 Aligned_cols=49 Identities=20% Similarity=0.331 Sum_probs=41.3
Q ss_pred CCeeeeCCCCCCCceeeehhhHhhhcc-ccCCCCCCcccccCCCcHHHHHHH
Q 003972 246 GGGYLCGCPLCNFSKVVSAHEFEQHAG-AKTRHPNNHIYLENGKPIYSIIQE 296 (782)
Q Consensus 246 ~~gi~C~C~~C~~~~v~s~~~FE~HAG-s~~~~p~~~I~lenG~sL~~v~~a 296 (782)
..|+.+-|..+++ +-+||.+||.||| .++|.=-..|.. ||.+|+-+||+
T Consensus 20 ~~G~~~kCI~~~~-~~~TP~eFe~~~g~~~~K~WK~sIR~-~g~~Lr~L~~~ 69 (73)
T smart00258 20 KCGISVKCIQYED-KWFTPKEFEIEGGKGKSKDWKRSIRC-GGSSLRTLMEN 69 (73)
T ss_pred hcCcccCCccCCC-EEEChHHHHhhcCCcccCCcchheeE-CCccHHHHHHc
Confidence 4599999999988 8999999999999 467777777754 68999988864
No 41
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=94.08 E-value=0.018 Score=65.88 Aligned_cols=43 Identities=37% Similarity=0.853 Sum_probs=35.7
Q ss_pred cccccCCC-----CceeecCCCCCcccccccCCC------CCCCCCccCcCCCC
Q 003972 510 MCHVCGDG-----ENLLLCNGCPLAFHAACLDPL------LIPESGWRCPNCRQ 552 (782)
Q Consensus 510 ~C~vCgdg-----G~Ll~Cd~Cp~afH~~CL~~~------~vP~g~W~C~~C~~ 552 (782)
.|.+|.-| ..||.|++|..-||+.|..+. ..+...|+|..|..
T Consensus 170 qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~ 223 (464)
T KOG4323|consen 170 QCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNR 223 (464)
T ss_pred eeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhcc
Confidence 38888643 489999999999999999972 24678999999986
No 42
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=93.50 E-value=0.019 Score=73.85 Aligned_cols=47 Identities=40% Similarity=1.087 Sum_probs=40.7
Q ss_pred CCcccccccCCC---CceeecCCCCCcccccccCC--CCCCCCCccCcCCCC
Q 003972 506 GSDDMCHVCGDG---ENLLLCNGCPLAFHAACLDP--LLIPESGWRCPNCRQ 552 (782)
Q Consensus 506 ~ndd~C~vCgdg---G~Ll~Cd~Cp~afH~~CL~~--~~vP~g~W~C~~C~~ 552 (782)
.....|.+|.-. .+++.|+.|...||..|+.| ..+|.++|+|+.|+.
T Consensus 1106 ~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~ 1157 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRK 1157 (1404)
T ss_pred cchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccch
Confidence 345679999643 47999999999999999998 789999999999977
No 43
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=93.36 E-value=0.027 Score=64.16 Aligned_cols=47 Identities=28% Similarity=0.855 Sum_probs=37.4
Q ss_pred cCccccCCCCCCCcccCCCCccccCCCCCccccccCCCCCCCCccccCCCCcEEcCCc
Q 003972 576 GGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDC 633 (782)
Q Consensus 576 ~~C~vC~~~d~s~~~~~~~~lL~CdqCer~yHv~CL~~~g~~~L~eiP~g~WFCc~~C 633 (782)
+.|.+|...+.+ +-.+++.||.|+-..|..|. .+.-+|+|.||| ..|
T Consensus 194 ~~C~~c~~t~~e----N~naiVfCdgC~i~VHq~CY------GI~f~peG~WlC-rkC 240 (669)
T COG5141 194 DICTKCTSTHNE----NSNAIVFCDGCEICVHQSCY------GIQFLPEGFWLC-RKC 240 (669)
T ss_pred hhhHhccccccC----CcceEEEecCcchhhhhhcc------cceecCcchhhh-hhh
Confidence 468888876422 34789999999999999998 446789999999 555
No 44
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=92.73 E-value=0.13 Score=46.32 Aligned_cols=42 Identities=17% Similarity=0.148 Sum_probs=35.2
Q ss_pred eEEEEEeeCCEEEEEEEEEeeCceeeeeeeeccccccccccccccC
Q 003972 736 MYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 736 fY~avLe~~~evVSaA~lRv~G~~vAElPlVaT~~~~r~qG~cr~L 781 (782)
....|++.+++||..+.++ +-+++..+.+.++|||+|+.++|
T Consensus 44 ~~~~v~~~~~~ivG~~~~~----~~~~i~~l~v~p~~r~~Gig~~L 85 (117)
T PF13673_consen 44 HTIFVAEEGGEIVGFAWLE----PDGEISHLYVLPEYRGRGIGRAL 85 (117)
T ss_dssp CEEEEEEETTEEEEEEEEE----TCEEEEEEEE-GGGTTSSHHHHH
T ss_pred CEEEEEEECCEEEEEEEEc----CCCeEEEEEEChhhcCCcHHHHH
Confidence 4678899999999999987 33458889999999999999876
No 45
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=92.39 E-value=0.19 Score=46.38 Aligned_cols=77 Identities=25% Similarity=0.290 Sum_probs=49.5
Q ss_pred hhHhHhhhhhcccccccccCCCcccceecccCCCCCccCceEEEEEeeCCEEEEEEEE-----EeeCce--eeeeeeecc
Q 003972 696 LSSATAIFRECFDPIIAECGRDLIPVMVYGRNISGQEFGGMYSVILTVKSVVVSAGLL-----RIFGRE--VAELPLVAT 768 (782)
Q Consensus 696 La~Al~If~EcF~PIv~~Tg~DlI~~mvy~r~~~~~dF~GfY~avLe~~~evVSaA~l-----Rv~G~~--vAElPlVaT 768 (782)
..+...++.++|.+-.... ..+-|.++.-+ .+ +++|.+.+++||+.+.+ .++|+. +|-+==|||
T Consensus 10 ~~~i~~l~~~~F~~~~~~~-----~~~~~~~~~~~---~~-~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~~i~~v~v 80 (127)
T PF13527_consen 10 FEQIIELFNEAFGDSESPP-----EIWEYFRNLYG---PG-RCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAAYIGDVAV 80 (127)
T ss_dssp HHHHHHHHHHHTTT-CHHH-----HHHHHHHHHHH---TT-EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHCCCCCCch-----hhhhhhhcccC---cC-cEEEEEECCEEEEEEEEEEEEEEECCEEEEEEEEEEEEE
Confidence 4455567777875444211 12222221111 12 67778889999998875 556774 799999999
Q ss_pred ccccccccccccC
Q 003972 769 CREYQGKVCIQHL 781 (782)
Q Consensus 769 ~~~~r~qG~cr~L 781 (782)
.++|||||.++.|
T Consensus 81 ~p~~R~~Gl~~~L 93 (127)
T PF13527_consen 81 DPEYRGRGLGRQL 93 (127)
T ss_dssp -GGGTTSSHHHHH
T ss_pred CHHHcCCCHHHHH
Confidence 9999999998876
No 46
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=92.26 E-value=0.055 Score=64.32 Aligned_cols=50 Identities=32% Similarity=0.882 Sum_probs=41.3
Q ss_pred cccCccccCCCCCCCcccCCCCccccCCCCCccccccCCCCCCCCccccCCCCcEEcCCch
Q 003972 574 EVGGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCN 634 (782)
Q Consensus 574 e~~~C~vC~~~d~s~~~~~~~~lL~CdqCer~yHv~CL~~~g~~~L~eiP~g~WFCc~~C~ 634 (782)
+.-.|.+|+.+|.+ ....|++||.|.--.|..|. .+.++|++.|.| ..|.
T Consensus 270 edviCDvCrspD~e----~~neMVfCd~Cn~cVHqaCy------GIle~p~gpWlC-r~Ca 319 (893)
T KOG0954|consen 270 EDVICDVCRSPDSE----EANEMVFCDKCNICVHQACY------GILEVPEGPWLC-RTCA 319 (893)
T ss_pred ccceeceecCCCcc----ccceeEEeccchhHHHHhhh------ceeecCCCCeee-hhcc
Confidence 44569999988632 46789999999999999998 567899999999 6664
No 47
>PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control. These include proteins linked to various human diseases, such as the Sp100 (Speckled protein 100 kDa), NUDR (Nuclear DEAF-1 related), GMEB (Glucocorticoid Modulatory Element Binding) proteins and AIRE-1 (Autoimmune regulator 1) proteins. Proteins containing the SAND domain have a modular structure; the SAND domain can be associated with a number of other modules, including the bromodomain, the PHD finger and the MYND finger. Because no SAND domain has been found in yeast, it is thought that the SAND domain could be restricted to animal phyla. Many SAND domain-containing proteins, including NUDR, DEAF-1 (Deformed epidermal autoregulatory factor-1) and GMEB, have been shown to bind DNA sequences specifically. The SAND domain has been proposed to mediate the DNA binding activity of these proteins [, ]. The resolution of the 3D structure of the SAND domain from Sp100b has revealed that it consists of a novel alpha/beta fold. The SAND domain adopts a compact fold consisting of a strongly twisted, five-stranded antiparallel beta-sheet with four alpha-helices packing against one side of the beta-sheet. The opposite side of the beta-sheet is solvent exposed. The beta-sheet and alpha-helical parts of the structure form two distinct regions. Multiple hydrophobic residues pack between these regions to form a structural core. A conserved KDWK sequence motif is found within the alpha-helical, positively charged surface patch. The DNA binding surface has been mapped to the alpha-helical region encompassing the KDWK motif [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1OQJ_B 1UFN_A 1H5P_A.
Probab=91.92 E-value=0.087 Score=47.23 Aligned_cols=54 Identities=24% Similarity=0.486 Sum_probs=37.9
Q ss_pred eEEEEe-----CCeeeeCCCCCCCceeeehhhHhhhccccCC-CCCCcccccCCCcHHHHHH
Q 003972 240 LDGIVN-----GGGYLCGCPLCNFSKVVSAHEFEQHAGAKTR-HPNNHIYLENGKPIYSIIQ 295 (782)
Q Consensus 240 l~G~i~-----~~gi~C~C~~C~~~~v~s~~~FE~HAGs~~~-~p~~~I~lenG~sL~~v~~ 295 (782)
++|++- ..|+...|-.+. .+-+||.+||.|||.... +=-..|.. +|.+|..+|+
T Consensus 18 ~~G~L~~~k~~~~g~~~kCI~~~-g~~~TP~eFE~~~G~~~sK~WK~SIr~-~g~~L~~li~ 77 (82)
T PF01342_consen 18 VKGTLYKKKFVKQGICGKCIQCE-GRWFTPSEFERHGGKGSSKDWKRSIRC-GGEPLGKLIE 77 (82)
T ss_dssp EEEEEEHHHH-TTGTTSS-EEET-TEEE-HHHHHHHHTTCTCS-HHHHSEE-TTEEHHHHHH
T ss_pred eEEEEEHHHhhcccccCceEeeC-CcEECHHHHHhhcCcccCCCCCccEEE-CCEEHHHHHh
Confidence 466665 345555666667 789999999999996543 24457777 8999998875
No 48
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=91.74 E-value=0.18 Score=38.83 Aligned_cols=43 Identities=23% Similarity=0.185 Sum_probs=36.7
Q ss_pred EEEeeCCEEEEEEEEEeeC--ceeeeeeeeccccccccccccccC
Q 003972 739 VILTVKSVVVSAGLLRIFG--REVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 739 avLe~~~evVSaA~lRv~G--~~vAElPlVaT~~~~r~qG~cr~L 781 (782)
.++..++++|+.+.+.... .+.+++=.+++.++|||||+.+.|
T Consensus 2 ~~~~~~~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~ 46 (65)
T cd04301 2 LVAEDDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSAL 46 (65)
T ss_pred EEEecCCEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHH
Confidence 3556779999999998877 578999999999999999988754
No 49
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=91.43 E-value=0.13 Score=47.64 Aligned_cols=33 Identities=39% Similarity=0.854 Sum_probs=28.1
Q ss_pred cCccccCCCCCCCcccCCCCccccCC--CCCccccccCCCCCC
Q 003972 576 GGCVICRSHDFSAATFDDRTVIYCDQ--CEKEFHVGCLRKNGL 616 (782)
Q Consensus 576 ~~C~vC~~~d~s~~~~~~~~lL~Cdq--Cer~yHv~CL~~~g~ 616 (782)
..|.+|++. .+..+.|.. |.+.||+.|....|+
T Consensus 56 ~~C~iC~~~--------~G~~i~C~~~~C~~~fH~~CA~~~g~ 90 (110)
T PF13832_consen 56 LKCSICGKS--------GGACIKCSHPGCSTAFHPTCARKAGL 90 (110)
T ss_pred CcCcCCCCC--------CceeEEcCCCCCCcCCCHHHHHHCCC
Confidence 469999975 467899998 999999999987765
No 50
>PRK03624 putative acetyltransferase; Provisional
Probab=89.96 E-value=0.27 Score=45.16 Aligned_cols=44 Identities=16% Similarity=0.090 Sum_probs=34.6
Q ss_pred EEEEEeeCCEEEEEEEEEeeCceeeeeeeeccccccccccccccC
Q 003972 737 YSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 737 Y~avLe~~~evVSaA~lRv~G~~vAElPlVaT~~~~r~qG~cr~L 781 (782)
+..|++.++++|+.+.+...+ ..+.+-.|++.++|||||+.+.|
T Consensus 46 ~~~v~~~~~~~vG~~~~~~~~-~~~~i~~i~v~p~~rg~Gig~~l 89 (140)
T PRK03624 46 LFLVAEVGGEVVGTVMGGYDG-HRGWAYYLAVHPDFRGRGIGRAL 89 (140)
T ss_pred eEEEEEcCCcEEEEEEeeccC-CCceEEEEEECHHHhCCCHHHHH
Confidence 345667789999998887655 34667789999999999998764
No 51
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=89.35 E-value=0.048 Score=41.51 Aligned_cols=33 Identities=33% Similarity=1.151 Sum_probs=17.2
Q ss_pred CCccccCCCCCccccccCCCCCCCCccccCCC-CcEEcCCc
Q 003972 594 RTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKD-KWFCCDDC 633 (782)
Q Consensus 594 ~~lL~CdqCer~yHv~CL~~~g~~~L~eiP~g-~WFCc~~C 633 (782)
..|+.|+.|.-..|..|.. +..+|.+ .|+| .-|
T Consensus 2 n~ll~C~~C~v~VH~~CYG------v~~~~~~~~W~C-~~C 35 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYG------VSEVPDGDDWLC-DRC 35 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-------SS--SS------HHH
T ss_pred CceEEeCCCCCcCChhhCC------cccCCCCCcEEC-CcC
Confidence 3589999999999999984 3455555 7999 443
No 52
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=88.70 E-value=0.43 Score=44.72 Aligned_cols=43 Identities=14% Similarity=0.040 Sum_probs=34.6
Q ss_pred EEEeeCCEEEEEEEEEee-----CceeeeeeeeccccccccccccccC
Q 003972 739 VILTVKSVVVSAGLLRIF-----GREVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 739 avLe~~~evVSaA~lRv~-----G~~vAElPlVaT~~~~r~qG~cr~L 781 (782)
.|++.++++|..+.+++. +...|++--+.+.++|||||+.+.|
T Consensus 50 ~v~~~~~~ivG~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~GiG~~L 97 (144)
T PRK10146 50 HLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKL 97 (144)
T ss_pred EEEEECCEEEEEEEEEecccccccchhheeheeEECHHHcCCCHHHHH
Confidence 456778999999888763 3346788888999999999998876
No 53
>PRK07757 acetyltransferase; Provisional
Probab=88.11 E-value=0.5 Score=45.08 Aligned_cols=42 Identities=21% Similarity=0.328 Sum_probs=37.0
Q ss_pred EEeeCCEEEEEEEEEeeCceeeeeeeeccccccccccccccC
Q 003972 740 ILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 740 vLe~~~evVSaA~lRv~G~~vAElPlVaT~~~~r~qG~cr~L 781 (782)
++..++++|..+.+.+.+...+++=-|++.++|||+|+.+.|
T Consensus 45 i~~~~~~lvG~~~l~~~~~~~~~i~~v~V~p~~rg~Glg~~L 86 (152)
T PRK07757 45 VAEEEGEIVGCCALHILWEDLAEIRSLAVSEDYRGQGIGRML 86 (152)
T ss_pred EEEECCEEEEEEEEEeccCCceEEEEEEECHHHcCCCHHHHH
Confidence 445679999999999999888998889999999999998765
No 54
>PRK10314 putative acyltransferase; Provisional
Probab=87.83 E-value=0.54 Score=46.13 Aligned_cols=43 Identities=14% Similarity=0.054 Sum_probs=34.4
Q ss_pred EEEeeCCEEEEEEEEEeeCc--eeeeeeeeccccccccccccccC
Q 003972 739 VILTVKSVVVSAGLLRIFGR--EVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 739 avLe~~~evVSaA~lRv~G~--~vAElPlVaT~~~~r~qG~cr~L 781 (782)
+++..++++|+.|-++..+. ..++|=-|++.++|||||+.+.|
T Consensus 51 ~~~~~~~~~vg~~r~~~~~~~~~~~~i~rv~V~~~~rG~GiG~~L 95 (153)
T PRK10314 51 ILGWKNDELVAYARILKSDDDLEPVVIGRVIVSEALRGEKVGQQL 95 (153)
T ss_pred EEEEECCEEEEEEEEecCCCCCCCEEEEEEEECHHHhCCCHHHHH
Confidence 34456899988888877543 36789999999999999999876
No 55
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=87.69 E-value=0.56 Score=47.20 Aligned_cols=49 Identities=18% Similarity=0.130 Sum_probs=39.1
Q ss_pred cCceEEEEEeeCCEEEEEEEEEeeCceeeeeeeeccccccccccccccC
Q 003972 733 FGGMYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 733 F~GfY~avLe~~~evVSaA~lRv~G~~vAElPlVaT~~~~r~qG~cr~L 781 (782)
+...+-++.+.++++|..+.++..+...+++-+++..++|||||+.+.|
T Consensus 99 ~~~~~~v~~~~~g~~vG~~~l~~~~~~~~~i~~~~V~p~~rg~Gig~~L 147 (194)
T PRK10975 99 FDHQCLLLRDASGQIQGFVTLRELNDTDARIGLLAVFPGAQGRGIGARL 147 (194)
T ss_pred cCCcEEEEEcCCCCEEEEEEEEecCCCceEEEEEEEChhhcCCCHHHHH
Confidence 3334444556678999999998877777899999999999999998765
No 56
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=87.40 E-value=0.37 Score=51.89 Aligned_cols=44 Identities=23% Similarity=0.171 Sum_probs=38.5
Q ss_pred EEEEeeCCEEEEEEEEEeeCceeeeeeeeccccccccccccccC
Q 003972 738 SVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 738 ~avLe~~~evVSaA~lRv~G~~vAElPlVaT~~~~r~qG~cr~L 781 (782)
+.-++-+|+||+.|..+-++-..|++-.|.|.++|||+||--+|
T Consensus 179 ~~f~~~d~~iVa~A~t~a~~~~~~~I~gV~T~peyR~kGyAt~l 222 (268)
T COG3393 179 TYFLEGDGKIVAKAETAAENPAYAQINGVYTHPEYRGKGYATAL 222 (268)
T ss_pred EEEEccCCcEEEeeeccccCCcceEEEEEEcCHHHccccHHHHH
Confidence 44455666999999999999999999999999999999997554
No 57
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=84.87 E-value=1 Score=48.01 Aligned_cols=45 Identities=7% Similarity=-0.079 Sum_probs=37.4
Q ss_pred EEEEEeeCCEEEEEEEEEeeCceeeeeeeeccccccccccccccC
Q 003972 737 YSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 737 Y~avLe~~~evVSaA~lRv~G~~vAElPlVaT~~~~r~qG~cr~L 781 (782)
+..|...+++||+.+.+...+...+++--|++.++|||||+.+.|
T Consensus 47 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~l~V~p~~rg~GiG~~L 91 (292)
T TIGR03448 47 RHLVAVDSDPIVGYANLVPARGTDPAMAELVVHPAHRRRGIGRAL 91 (292)
T ss_pred eEEEEEECCEEEEEEEEEcCCCCcceEEEEEECHhhcCCCHHHHH
Confidence 455666789999999998876555777788999999999999876
No 58
>PRK07922 N-acetylglutamate synthase; Validated
Probab=84.76 E-value=0.89 Score=45.27 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=37.1
Q ss_pred EEEe-eCCEEEEEEEEEeeCceeeeeeeeccccccccccccccC
Q 003972 739 VILT-VKSVVVSAGLLRIFGREVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 739 avLe-~~~evVSaA~lRv~G~~vAElPlVaT~~~~r~qG~cr~L 781 (782)
.|++ .++++|+.+.+.+.....+++-.++..++|||||+.+.|
T Consensus 48 ~va~~~~~~iiG~~~~~~~~~~~~~i~~l~V~p~~rgkGiG~~L 91 (169)
T PRK07922 48 WVAEHLDGEVVGCGALHVMWEDLAEIRTVAVDPAARGRGVGHAI 91 (169)
T ss_pred EEEEecCCcEEEEEEEeecCCCceEEEEEEECHHHhCCCHHHHH
Confidence 3566 789999999888777778999999999999999998865
No 59
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=84.69 E-value=0.91 Score=48.44 Aligned_cols=46 Identities=20% Similarity=0.128 Sum_probs=36.9
Q ss_pred eEEEEEeeCCEEEEEEEEEe-eCceeeeeeeeccccccccccccccC
Q 003972 736 MYSVILTVKSVVVSAGLLRI-FGREVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 736 fY~avLe~~~evVSaA~lRv-~G~~vAElPlVaT~~~~r~qG~cr~L 781 (782)
.+..+++.+++||+.+.+.+ .+...|||=-+++.++|||||+.+.|
T Consensus 158 ~~~~v~~~~g~iVG~~~~~~~~~~~~~eI~~i~V~P~yRG~GiG~~L 204 (266)
T TIGR03827 158 VVYFGVEDGGKIIALASAEMDPENGNAEMTDFATLPEYRGKGLAKIL 204 (266)
T ss_pred cEEEEEEECCEEEEEEEEecCCCCCcEEEEEEEECHHHcCCCHHHHH
Confidence 44456677999999998854 34457899889999999999998875
No 60
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=83.30 E-value=1.4 Score=41.78 Aligned_cols=47 Identities=21% Similarity=0.174 Sum_probs=36.7
Q ss_pred CceEEEEEeeCCEEEEEEEEEeeCceeeeeeeeccccccccccccccC
Q 003972 734 GGMYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 734 ~GfY~avLe~~~evVSaA~lRv~G~~vAElPlVaT~~~~r~qG~cr~L 781 (782)
.+++..+++.++++|..+.++..... +++--|++.++|||||+.+.|
T Consensus 38 ~~~~~~~~~~~~~~vG~~~~~~~~~~-~~~~~i~v~~~~rg~G~g~~l 84 (146)
T PRK09491 38 ERYLNLKLTVNGQMAAFAITQVVLDE-ATLFNIAVDPDYQRQGLGRAL 84 (146)
T ss_pred cCceEEEEEECCeEEEEEEEEeecCc-eEEEEEEECHHHccCCHHHHH
Confidence 35555566788999999999877655 456678899999999998764
No 61
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=83.09 E-value=1.5 Score=39.85 Aligned_cols=43 Identities=23% Similarity=0.211 Sum_probs=33.8
Q ss_pred EEEEeeCCEEEEEEEEEeeCceeeeeeeeccccccccccccccC
Q 003972 738 SVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 738 ~avLe~~~evVSaA~lRv~G~~vAElPlVaT~~~~r~qG~cr~L 781 (782)
-+++..++++|+.+.+++-. ..+.+-.+++.++|||||+.+.|
T Consensus 33 ~~~~~~~~~~vg~~~~~~~~-~~~~i~~~~v~~~~rg~G~g~~l 75 (131)
T TIGR01575 33 YLLARIGGKVVGYAGVQIVL-DEAHILNIAVKPEYQGQGIGRAL 75 (131)
T ss_pred EEEEecCCeEEEEEEEEecC-CCeEEEEEEECHHHcCCCHHHHH
Confidence 34556689999999987644 34677788999999999998765
No 62
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=82.36 E-value=1.3 Score=47.92 Aligned_cols=46 Identities=24% Similarity=0.216 Sum_probs=34.7
Q ss_pred CceEEEEEeeCCEEEEEEEEEeeCceeeeeeeeccccccccccccccC
Q 003972 734 GGMYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 734 ~GfY~avLe~~~evVSaA~lRv~G~~vAElPlVaT~~~~r~qG~cr~L 781 (782)
.||=-+|| .+++|||+|+=...+...+|+= |+|.++|||||.-+++
T Consensus 164 ~G~Gf~i~-~~~~iVs~~~s~~~~~~~~EI~-I~T~~~yR~kGLA~~~ 209 (265)
T PF12746_consen 164 NGFGFCIL-HDGEIVSGCSSYFVYENGIEID-IETHPEYRGKGLATAV 209 (265)
T ss_dssp H--EEEEE-ETTEEEEEEEEEEEETTEEEEE-EEE-CCCTTSSHHHHH
T ss_pred cCcEEEEE-ECCEEEEEEEEEEEECCEEEEE-EEECHHhhcCCHHHHH
Confidence 44433344 4799999999999999999986 7899999999987653
No 63
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=81.97 E-value=1.7 Score=43.69 Aligned_cols=43 Identities=16% Similarity=0.040 Sum_probs=36.0
Q ss_pred EEEeeCCEEEEEEEEEeeCceeeeeeeeccccccccccccccC
Q 003972 739 VILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 739 avLe~~~evVSaA~lRv~G~~vAElPlVaT~~~~r~qG~cr~L 781 (782)
++++.++++|..+.++.+....|++=.++..++|||||+.+.|
T Consensus 102 i~~~~~g~iiG~i~l~~~~~~~~~i~~l~V~p~~rGkG~G~~l 144 (191)
T TIGR02382 102 ILRDASGDPRGYVTLRELNDTDARIGLLAVFPGAQSRGIGAEL 144 (191)
T ss_pred EEEccCCeEEEEEEEEecCCCceEEEEEEECHHHcCCCHHHHH
Confidence 3456688999999998776667888889999999999998765
No 64
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=80.76 E-value=0.95 Score=37.71 Aligned_cols=38 Identities=26% Similarity=0.706 Sum_probs=30.4
Q ss_pred cCccccCCCCCCCcccCCCCccccCCCCCccccccCCCCCCCC
Q 003972 576 GGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCD 618 (782)
Q Consensus 576 ~~C~vC~~~d~s~~~~~~~~lL~CdqCer~yHv~CL~~~g~~~ 618 (782)
..|.+|++. ..+++.++.|..|...||..|....|.+.
T Consensus 6 ~~C~~Cg~~-----~~~~dDiVvCp~CgapyHR~C~~~~g~C~ 43 (54)
T PF14446_consen 6 CKCPVCGKK-----FKDGDDIVVCPECGAPYHRDCWEKAGGCI 43 (54)
T ss_pred ccChhhCCc-----ccCCCCEEECCCCCCcccHHHHhhCCceE
Confidence 359999975 23478899999999999999997766543
No 65
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=80.48 E-value=1.6 Score=46.38 Aligned_cols=48 Identities=13% Similarity=0.147 Sum_probs=36.5
Q ss_pred CceEEEEEeeCCEEEEEEEEEeeCc--eeeeeeeeccccccccccccccC
Q 003972 734 GGMYSVILTVKSVVVSAGLLRIFGR--EVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 734 ~GfY~avLe~~~evVSaA~lRv~G~--~vAElPlVaT~~~~r~qG~cr~L 781 (782)
.++|.|+-..++++|.-+.+++.+. .++++=.|++.++|||||+.++|
T Consensus 198 ~~~~~a~~~~~~~~vG~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~l 247 (292)
T TIGR03448 198 AGLFLAFDDAPGELLGFHWTKVHPDEPALGEVYVVGVDPAAQGRGLGDAL 247 (292)
T ss_pred CceEEEEECCCCcEEEEEEEEecCCCCceeEEEEEEECHHHcCCCHHHHH
Confidence 4566555434789998877777653 36778788999999999999876
No 66
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=79.05 E-value=1.8 Score=49.48 Aligned_cols=42 Identities=19% Similarity=0.292 Sum_probs=37.2
Q ss_pred EEeeCCEEEEEEEEEeeC-ceeeeeeeeccccccccccccccC
Q 003972 740 ILTVKSVVVSAGLLRIFG-REVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 740 vLe~~~evVSaA~lRv~G-~~vAElPlVaT~~~~r~qG~cr~L 781 (782)
|++.++++|+.+.+..+. ...||+--+++.++|||||+.+.|
T Consensus 326 V~~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~L 368 (429)
T TIGR01890 326 IIEHDGNIIGCAALYPYAEEDCGEMACLAVSPEYQDGGRGERL 368 (429)
T ss_pred EEEECCEEEEEEEEEecCCCCeEEEEEEEECHHHcCCCHHHHH
Confidence 568899999999999874 468999999999999999998876
No 67
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=78.66 E-value=2.7 Score=39.95 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=28.7
Q ss_pred CCEEEEEEEEEee------CceeeeeeeeccccccccccccccC
Q 003972 744 KSVVVSAGLLRIF------GREVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 744 ~~evVSaA~lRv~------G~~vAElPlVaT~~~~r~qG~cr~L 781 (782)
+++||..+.+.+. ..+++.+--|+..++|||||+.+.|
T Consensus 63 ~~~ivG~~~~~~~~~~~~~~~~~~~i~~i~V~~~~rg~GiG~~l 106 (150)
T PLN02706 63 SGRIIATGSVFVERKFIRNCGKVGHIEDVVVDSAARGKGLGKKI 106 (150)
T ss_pred CCcEEEEEEEEEEeecccCCCcEEEEEEEEECHHHcCCCHHHHH
Confidence 6899988887532 2345566668999999999998764
No 68
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=78.11 E-value=2.3 Score=48.85 Aligned_cols=58 Identities=26% Similarity=0.527 Sum_probs=37.8
Q ss_pred ccccCCCCCCCcccCCCCccccCCCCCccccccCCCCCCCC---ccccC---CCCcEEcCCchhHHH
Q 003972 578 CVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCD---LKEIP---KDKWFCCDDCNRIHA 638 (782)
Q Consensus 578 C~vC~~~d~s~~~~~~~~lL~CdqCer~yHv~CL~~~g~~~---L~eiP---~g~WFCc~~C~~i~~ 638 (782)
|.+|.+-|+.. ++-..|.||-|+.|.|..|.-..++.. ...-+ .+.-|+|..|.+...
T Consensus 131 C~iC~kfD~~~---n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C~~C~~~se 194 (446)
T PF07227_consen 131 CCICSKFDDNK---NTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHCRACGKTSE 194 (446)
T ss_pred ccccCCcccCC---CCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEccCCCChhh
Confidence 99999876543 345679999999999999975544321 01111 122466699987643
No 69
>PLN02825 amino-acid N-acetyltransferase
Probab=76.80 E-value=2.3 Score=50.11 Aligned_cols=44 Identities=18% Similarity=0.232 Sum_probs=37.6
Q ss_pred EEEEeeCCEEEEEEEEEeeC-ceeeeeeeeccccccccccccccC
Q 003972 738 SVILTVKSVVVSAGLLRIFG-REVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 738 ~avLe~~~evVSaA~lRv~G-~~vAElPlVaT~~~~r~qG~cr~L 781 (782)
..|++.+++||+.|.+..+. .+.|||=-||..++|||+|+.+.|
T Consensus 409 f~V~e~Dg~IVG~aal~~~~~~~~aEI~~laV~P~yRGkGiG~~L 453 (515)
T PLN02825 409 FVVVEREGSIIACAALFPFFEEKCGEVAAIAVSPECRGQGQGDKL 453 (515)
T ss_pred EEEEEECCEEEEEEEEEeecCCCcEEEEEEEECHHHcCCCHHHHH
Confidence 35789999999999876665 468999899999999999998876
No 70
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=76.74 E-value=3.1 Score=39.52 Aligned_cols=45 Identities=11% Similarity=0.189 Sum_probs=34.0
Q ss_pred eEEEEEeeCCEEEEEEEEEee----CceeeeeeeeccccccccccccccC
Q 003972 736 MYSVILTVKSVVVSAGLLRIF----GREVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 736 fY~avLe~~~evVSaA~lRv~----G~~vAElPlVaT~~~~r~qG~cr~L 781 (782)
.+..|.+.++++|+.+.+... ....+|+- |...++|||||+.+.|
T Consensus 51 ~~~~v~~~~~~~vG~~~~~~~~~~~~~~~~~~~-~~v~p~~rg~Gig~~l 99 (162)
T PRK10140 51 IKQLVACIDGDVVGHLTIDVQQRPRRSHVADFG-ICVDSRWKNRGVASAL 99 (162)
T ss_pred cEEEEEEECCEEEEEEEEecccccccceEEEEE-EEECHHHcCCCHHHHH
Confidence 355667788999999988643 23467765 7889999999998754
No 71
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=76.30 E-value=2.5 Score=50.78 Aligned_cols=43 Identities=16% Similarity=0.125 Sum_probs=38.3
Q ss_pred EEEeeCCEEEEEEEEEeeCceeeeeeeeccccccccccccccC
Q 003972 739 VILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 739 avLe~~~evVSaA~lRv~G~~vAElPlVaT~~~~r~qG~cr~L 781 (782)
.|++.+++||..+.+.+.+...+|+--+++.++|||||+.+.|
T Consensus 506 ~Va~~~g~IVG~~~l~~~~~~~~~I~~i~V~P~~rGkGIGk~L 548 (614)
T PRK12308 506 AVAEHHGEVTGCASLYIYDSGLAEIRSLGVEAGWQVQGQGSAL 548 (614)
T ss_pred EEEEECCEEEEEEEEEEcCCCeEEEEEEEECHHHcCCCHHHHH
Confidence 4677899999999999887778999999999999999999876
No 72
>PRK01346 hypothetical protein; Provisional
Probab=75.98 E-value=2.7 Score=47.41 Aligned_cols=44 Identities=14% Similarity=-0.031 Sum_probs=35.3
Q ss_pred EEEEeeCCEEEEEEEEEe-----e-Cc--eeeeeeeeccccccccccccccC
Q 003972 738 SVILTVKSVVVSAGLLRI-----F-GR--EVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 738 ~avLe~~~evVSaA~lRv-----~-G~--~vAElPlVaT~~~~r~qG~cr~L 781 (782)
+.+...+++||+.+.+.. . |. ..+.+--|+|.++|||||+.++|
T Consensus 49 ~~va~~~~~lvg~~~~~~~~~~~~~~~~~~~~~i~~v~V~P~~RgrGig~~L 100 (411)
T PRK01346 49 TLGAFDGDEVVGTAGAFDLRLTVPGGAVLPAAGVTAVTVAPTHRRRGLLTAL 100 (411)
T ss_pred eEEEEECCEEEEEEEEeccccccCCCCccceeEEEEEEEChhhcCCCHHHHH
Confidence 345667899999888653 2 43 57899999999999999999876
No 73
>PRK13688 hypothetical protein; Provisional
Probab=75.74 E-value=3.4 Score=41.12 Aligned_cols=41 Identities=17% Similarity=0.057 Sum_probs=32.2
Q ss_pred EeeCCEEEEEEEEEee----------CceeeeeeeeccccccccccccccC
Q 003972 741 LTVKSVVVSAGLLRIF----------GREVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 741 Le~~~evVSaA~lRv~----------G~~vAElPlVaT~~~~r~qG~cr~L 781 (782)
+..++++|+.+.+... ..+.++|=-+++.++|||||+.++|
T Consensus 50 ~~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p~~rgkGiG~~L 100 (156)
T PRK13688 50 IYYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVLPKYQNRGYGEML 100 (156)
T ss_pred EEECCEEEEEEEEEecCCcccccccCCCCeEEEEEEEECHHHcCCCHHHHH
Confidence 3357888888777542 2456788899999999999999876
No 74
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=74.81 E-value=1.9 Score=38.38 Aligned_cols=36 Identities=19% Similarity=0.007 Sum_probs=27.7
Q ss_pred CEEEEEEEEEeeCceeeeeeeeccccccccccccccC
Q 003972 745 SVVVSAGLLRIFGREVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 745 ~evVSaA~lRv~G~~vAElPlVaT~~~~r~qG~cr~L 781 (782)
++.++.+.-.+.... ++|=-|.|.++|||+||.++|
T Consensus 7 ~~~~~l~~~~~~~~~-g~i~~v~t~p~~RrrGlg~~l 42 (86)
T PF08445_consen 7 GELVALVAWIIRSDD-GEIGGVYTLPEHRRRGLGSAL 42 (86)
T ss_dssp TCCEEEEEEEEESCT-CCEEEEEE-GGGTTSSHHHHH
T ss_pred CCccceeeEeeeCCC-cEEEEEEECHHHcCCCHHHHH
Confidence 355666666666666 999999999999999998765
No 75
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=73.63 E-value=3.5 Score=46.04 Aligned_cols=45 Identities=13% Similarity=0.101 Sum_probs=35.8
Q ss_pred ccCceEEEEEeeCCEEEEEEEEEeeCceeeeeeeeccccccccccccccC
Q 003972 732 EFGGMYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 732 dF~GfY~avLe~~~evVSaA~lRv~G~~vAElPlVaT~~~~r~qG~cr~L 781 (782)
|..--|++++..+++||+.|.+ .|.- +=-||+.++|||||+++.|
T Consensus 27 d~~~d~~vv~~~~~~lVg~g~l--~g~~---ik~vaV~~~~rG~Glg~~L 71 (332)
T TIGR00124 27 DAPLEIFIAVYEDEEIIGCGGI--AGNV---IKCVAIDESLRGEGLALQL 71 (332)
T ss_pred cCCCCEEEEEEECCEEEEEEEE--ecCE---EEEEEEcHHHcCCCHHHHH
Confidence 3344588889999999999887 4643 5589999999999998765
No 76
>PTZ00330 acetyltransferase; Provisional
Probab=73.59 E-value=4.3 Score=38.06 Aligned_cols=45 Identities=18% Similarity=0.177 Sum_probs=33.1
Q ss_pred EEEEEeeCCEEEEEEEEEee------CceeeeeeeeccccccccccccccC
Q 003972 737 YSVILTVKSVVVSAGLLRIF------GREVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 737 Y~avLe~~~evVSaA~lRv~------G~~vAElPlVaT~~~~r~qG~cr~L 781 (782)
+.++.+.++++|..+.+.+. |...+++=-+...++|||||+.+.|
T Consensus 53 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~l 103 (147)
T PTZ00330 53 RVFVHSPTQRIVGTASLFVEPKFTRGGKCVGHIEDVVVDPSYRGQGLGRAL 103 (147)
T ss_pred EEEEEeCCCEEEEEEEEEeccccccCCCceEEEEEEEECHHHcCCCHHHHH
Confidence 34555678999988887653 3335566667889999999998765
No 77
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=70.88 E-value=3.3 Score=41.45 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=34.0
Q ss_pred EEeeCCEEEEEEEEE-eeCceeeeeeeeccccccccccccccC
Q 003972 740 ILTVKSVVVSAGLLR-IFGREVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 740 vLe~~~evVSaA~lR-v~G~~vAElPlVaT~~~~r~qG~cr~L 781 (782)
|+|+++.||..|.|= +...+++||==||-.++||++|...+|
T Consensus 44 i~E~~g~viGC~aL~~~~~~~~gE~~~laV~pd~r~~G~G~~L 86 (153)
T COG1246 44 IIERDGKVIGCAALHPVLEEDLGELRSLAVHPDYRGSGRGERL 86 (153)
T ss_pred eeeeCCcEEEEEeecccCccCeeeEEEEEECHHhcCCCcHHHH
Confidence 445566776655554 999999999999999999999987665
No 78
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=70.21 E-value=4.6 Score=39.49 Aligned_cols=45 Identities=20% Similarity=-0.004 Sum_probs=34.2
Q ss_pred EEEEEe-eCCEEEEEEEE--EeeCceeeeeeeeccccccccccccccC
Q 003972 737 YSVILT-VKSVVVSAGLL--RIFGREVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 737 Y~avLe-~~~evVSaA~l--Rv~G~~vAElPlVaT~~~~r~qG~cr~L 781 (782)
+++|.+ .+++||..+.+ +....+.+.+-.|+..++|||||+.+.|
T Consensus 40 ~~~v~~~~~~~ivG~~~~~~~~~~~~~~~i~~l~V~p~~rg~GiG~~L 87 (157)
T TIGR02406 40 TSIVAESEGGEIVGFVSGYLRPDRPDVLFVWQVAVDPRARGKGLARRL 87 (157)
T ss_pred cEEEEEcCCCeEEEEEEEEecCCCCCeEEEEEEEEChHhccCcHHHHH
Confidence 445556 46799998764 3344557888899999999999998865
No 79
>PRK09831 putative acyltransferase; Provisional
Probab=69.25 E-value=3.9 Score=39.12 Aligned_cols=38 Identities=11% Similarity=0.002 Sum_probs=30.0
Q ss_pred EEEeeCCEEEEEEEEEeeCceeeeeeeeccccccccccccccC
Q 003972 739 VILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 739 avLe~~~evVSaA~lRv~G~~vAElPlVaT~~~~r~qG~cr~L 781 (782)
.|...++++|..+.+-- +.+-.+.+.++|||||+.++|
T Consensus 56 ~v~~~~~~iiG~~~~~~-----~~i~~~~v~p~~~g~GiG~~L 93 (147)
T PRK09831 56 RVAVINAQPVGFITCIE-----HYIDMLFVDPEYTRRGVASAL 93 (147)
T ss_pred EEEEECCEEEEEEEehh-----ceeeeEEECHHHcCCCHHHHH
Confidence 35567899998877631 456789999999999999876
No 80
>PRK05279 N-acetylglutamate synthase; Validated
Probab=68.97 E-value=5 Score=46.07 Aligned_cols=43 Identities=16% Similarity=0.341 Sum_probs=36.1
Q ss_pred EEEeeCCEEEEEEEEEeeC-ceeeeeeeeccccccccccccccC
Q 003972 739 VILTVKSVVVSAGLLRIFG-REVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 739 avLe~~~evVSaA~lRv~G-~~vAElPlVaT~~~~r~qG~cr~L 781 (782)
.+++.+++||+.|.+..+. ...+++--|++.++|||||+.+.|
T Consensus 337 ~va~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~L 380 (441)
T PRK05279 337 TVIERDGLIIGCAALYPFPEEKMGEMACLAVHPDYRGSGRGERL 380 (441)
T ss_pred EEEEECCEEEEEEEEEEcCCCCeEEEEEEEECHHHcCCCHHHHH
Confidence 4667899999998777654 358999999999999999998876
No 81
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=67.92 E-value=5.9 Score=43.40 Aligned_cols=68 Identities=22% Similarity=0.343 Sum_probs=43.3
Q ss_pred CChhhHhhhccCCcCCceEEEeec--CCcceeEEEEeC------CeeeeCCCCCCCceeeehhhHhhhcccc-CCCCCCc
Q 003972 211 YPTNVKKLLSTGILDGACVKYIST--SRERQLDGIVNG------GGYLCGCPLCNFSKVVSAHEFEQHAGAK-TRHPNNH 281 (782)
Q Consensus 211 ~p~~~k~ll~tg~leg~~V~y~~~--~~~~~l~G~i~~------~gi~C~C~~C~~~~v~s~~~FE~HAGs~-~~~p~~~ 281 (782)
.+++...-..+.+++.+|-.+-.. .......|++-. .-|.|-|. ...|||.+|=.|||.. .-||-.|
T Consensus 207 ~~~~~~~~~~~~~~~~mp~v~t~g~gpng~~i~g~ly~y~~~~~v~i~c~ch----g~~~~~~efv~h~~~~~~~~p~~h 282 (284)
T PF07897_consen 207 PRTNSGGDGSRNMMEDMPCVSTTGDGPNGKRIEGFLYKYGKGEEVRIVCVCH----GSFLSPAEFVKHAGGGDVANPLRH 282 (284)
T ss_pred ccccccccccccccccCCceeeccCCCCCceeeEEEEEecCCCeEEEEEEec----CCCCCHHHHHHhcCCCCcCCchhc
Confidence 334444444555566666444322 223345555432 23999999 8899999999999964 5688888
Q ss_pred c
Q 003972 282 I 282 (782)
Q Consensus 282 I 282 (782)
|
T Consensus 283 i 283 (284)
T PF07897_consen 283 I 283 (284)
T ss_pred c
Confidence 7
No 82
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=67.84 E-value=4.8 Score=47.00 Aligned_cols=48 Identities=27% Similarity=0.540 Sum_probs=40.4
Q ss_pred CCCCcccccccCCCCceeecCCCCCcccccccCCCCCCCCCccCcCCCC
Q 003972 504 TGGSDDMCHVCGDGENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQ 552 (782)
Q Consensus 504 ~~~ndd~C~vCgdgG~Ll~Cd~Cp~afH~~CL~~~~vP~g~W~C~~C~~ 552 (782)
.+.+.+.|.+|.+||.+++|+.+..++|..|... ..|+..|.|..|..
T Consensus 85 ~~~~~~~c~vc~~ggs~v~~~s~~~~~~r~c~~~-~~~~c~~~~~d~~~ 132 (463)
T KOG1081|consen 85 PKIEPSECFVCFKGGSLVTCKSRIQAPHRKCKPA-QLEKCSKRCTDCRA 132 (463)
T ss_pred cCCCcchhccccCCCccceeccccccccccCcCc-cCcccccCCcceee
Confidence 3467789999999999999999999999999865 35677788888865
No 83
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=67.53 E-value=2.4 Score=38.55 Aligned_cols=45 Identities=36% Similarity=0.725 Sum_probs=28.0
Q ss_pred CcccccccCC-----------CC---ceeecCCCCCcccccccCC-CCCCCCCccCcCCCC
Q 003972 507 SDDMCHVCGD-----------GE---NLLLCNGCPLAFHAACLDP-LLIPESGWRCPNCRQ 552 (782)
Q Consensus 507 ndd~C~vCgd-----------gG---~Ll~Cd~Cp~afH~~CL~~-~~vP~g~W~C~~C~~ 552 (782)
+|+.|.||.. +| -|+.+ .|...||..|+.. ..-....-.||.|+.
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g-~C~H~FH~hCI~kWl~~~~~~~~CPmCR~ 79 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWG-KCSHNFHMHCILKWLSTQSSKGQCPMCRQ 79 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeec-cCccHHHHHHHHHHHccccCCCCCCCcCC
Confidence 4778888753 22 13333 4889999999874 112233458888874
No 84
>PHA01807 hypothetical protein
Probab=65.43 E-value=5.5 Score=39.61 Aligned_cols=44 Identities=9% Similarity=0.073 Sum_probs=32.1
Q ss_pred EEEEeeCCEEEEEEEEEeeCce-eeeee---eeccccccccccccccC
Q 003972 738 SVILTVKSVVVSAGLLRIFGRE-VAELP---LVATCREYQGKVCIQHL 781 (782)
Q Consensus 738 ~avLe~~~evVSaA~lRv~G~~-vAElP---lVaT~~~~r~qG~cr~L 781 (782)
..|++.+++||..+.+...... .+++- -|.+.++|||+|+.+.|
T Consensus 55 ~lva~~dg~lvG~~~l~~~~~~~~~~i~~l~~lYV~pe~RG~GiG~~L 102 (153)
T PHA01807 55 ELLVFRDGKLAGIAVLVFEDDPHVGPCLGVQWQYVLPEYRNAGVAREF 102 (153)
T ss_pred EEEEEECCEEEEEEEEEcCCCcceeeeccceeEEECHHHcCCCHHHHH
Confidence 3556779999999998765533 23322 25899999999999876
No 85
>PRK10562 putative acetyltransferase; Provisional
Probab=65.20 E-value=7 Score=37.13 Aligned_cols=38 Identities=3% Similarity=-0.206 Sum_probs=28.7
Q ss_pred EEeeCCEEEEEEEEEeeCceeeeeeeeccccccccccccccC
Q 003972 740 ILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 740 vLe~~~evVSaA~lRv~G~~vAElPlVaT~~~~r~qG~cr~L 781 (782)
|+..++++|+.+.|... .++-.+++.++|||||+.+.|
T Consensus 52 v~~~~~~~iG~~~~~~~----~~i~~~~v~~~~rg~G~g~~l 89 (145)
T PRK10562 52 VWEEDGKLLGFVSVLEG----RFVGALFVAPKAVRRGIGKAL 89 (145)
T ss_pred EEEECCEEEEEEEEeec----cEEEEEEECHHHcCCCHHHHH
Confidence 44567899988877432 356678999999999998864
No 86
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=65.13 E-value=3.8 Score=34.25 Aligned_cols=30 Identities=30% Similarity=0.974 Sum_probs=25.8
Q ss_pred cccccccCC----CCceeecCCCCCcccccccCC
Q 003972 508 DDMCHVCGD----GENLLLCNGCPLAFHAACLDP 537 (782)
Q Consensus 508 dd~C~vCgd----gG~Ll~Cd~Cp~afH~~CL~~ 537 (782)
...|.+|++ +++++.|..|...||..|...
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 457999985 689999999999999999854
No 87
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=65.07 E-value=3.3 Score=45.30 Aligned_cols=32 Identities=44% Similarity=0.771 Sum_probs=29.1
Q ss_pred cEEcCCCCCccCccccccccCccccCCCccce
Q 003972 450 GIVCDCCNKEISPSQFEAHAGMAARRQPYRHI 481 (782)
Q Consensus 450 GI~C~cC~~~~Sps~FE~hAG~~~~r~Py~~I 481 (782)
.|+|.|=+.-+||.+|-.|||...--+|..||
T Consensus 252 ~i~c~chg~~~~~~efv~h~~~~~~~~p~~hi 283 (284)
T PF07897_consen 252 RIVCVCHGSFLSPAEFVKHAGGGDVANPLRHI 283 (284)
T ss_pred EEEEEecCCCCCHHHHHHhcCCCCcCCchhcc
Confidence 58999999999999999999998777898887
No 88
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=64.08 E-value=3.5 Score=51.88 Aligned_cols=45 Identities=24% Similarity=0.760 Sum_probs=38.2
Q ss_pred cCccccCCCCCCCcccCCCCccccCCCCCccccccCCCCCCCCccccCCCCcEEcCCch
Q 003972 576 GGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCN 634 (782)
Q Consensus 576 ~~C~vC~~~d~s~~~~~~~~lL~CdqCer~yHv~CL~~~g~~~L~eiP~g~WFCc~~C~ 634 (782)
..|.+|.. .+.+++|..|++.||..|..+ ++.+.|+..|-| .-|.
T Consensus 345 dhcrf~~d---------~~~~lc~Et~prvvhlEcv~h----P~~~~~s~~~e~-evc~ 389 (1414)
T KOG1473|consen 345 DHCRFCHD---------LGDLLCCETCPRVVHLECVFH----PRFAVPSAFWEC-EVCN 389 (1414)
T ss_pred ccccccCc---------ccceeecccCCceEEeeecCC----ccccCCCccchh-hhhh
Confidence 35999984 578899999999999999987 788999999988 5553
No 89
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=61.51 E-value=5.2 Score=44.13 Aligned_cols=102 Identities=19% Similarity=0.363 Sum_probs=59.2
Q ss_pred cccccC-CCCceeecCCCCCcccccccCCCCCCCCCccCcCCCCCCCCCccccccccCCCCCCCc-------cccCcccc
Q 003972 510 MCHVCG-DGENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQGHSSSMSRSVDLKGGLEAPGA-------EVGGCVIC 581 (782)
Q Consensus 510 ~C~vCg-dgG~Ll~Cd~Cp~afH~~CL~~~~vP~g~W~C~~C~~~~~~~~s~pi~l~r~~k~~~~-------e~~~C~vC 581 (782)
.|-.|. +++....|-.|.-.+|..-+.......+.+.|.-|....++..-.+.+ ..+..... +--.| .|
T Consensus 57 sClTC~P~~~~agvC~~C~~~CH~~H~lveL~tKR~FrCDCg~sk~g~~sc~l~~--~~~~~n~~N~YNhNfqG~~C-~C 133 (345)
T KOG2752|consen 57 SCLTCTPAPEMAGVCYACSLSCHDGHELVELYTKRNFRCDCGNSKFGRCSCNLLE--DKDAENSENLYNHNFQGLFC-KC 133 (345)
T ss_pred EeecccCChhhceeEEEeeeeecCCceeeeccccCCccccccccccccccccccc--ccccccchhhhhhhhcceeE-Ee
Confidence 366664 455777888888888877666666667888887775522221111110 00000111 11134 45
Q ss_pred CCCCCCCcccCCCCccccCCCCCccc-cccCCCC
Q 003972 582 RSHDFSAATFDDRTVIYCDQCEKEFH-VGCLRKN 614 (782)
Q Consensus 582 ~~~d~s~~~~~~~~lL~CdqCer~yH-v~CL~~~ 614 (782)
...+.+-.--.++.|++|--|+-||| -+|++..
T Consensus 134 d~~Ypdp~~~~e~~m~QC~iCEDWFHce~c~~~~ 167 (345)
T KOG2752|consen 134 DTPYPDPVRTEEGEMLQCVICEDWFHCEGCMQAK 167 (345)
T ss_pred cCCCCCccccccceeeeEEeccchhcccccCccc
Confidence 55543211223678999999999999 8998654
No 90
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=57.43 E-value=3.3 Score=49.34 Aligned_cols=50 Identities=30% Similarity=0.728 Sum_probs=35.8
Q ss_pred CccccCCCCCCCcccCCCCccccCCCCCccccccCCCCCCCCccccCCCCcEEcCCchhHHHH
Q 003972 577 GCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNRIHAA 639 (782)
Q Consensus 577 ~C~vC~~~d~s~~~~~~~~lL~CdqCer~yHv~CL~~~g~~~L~eiP~g~WFCc~~C~~i~~~ 639 (782)
.|.+|... .-.-.|..++...|+.|...||..|++... .||+.|.++..+
T Consensus 513 iCe~Cq~~-~iiyPF~~~~~~rC~~C~avfH~~C~~r~s------------~~CPrC~R~q~r 562 (580)
T KOG1829|consen 513 ICELCQHN-DIIYPFETRNTRRCSTCLAVFHKKCLRRKS------------PCCPRCERRQKR 562 (580)
T ss_pred eeeeccCC-CcccccccccceeHHHHHHHHHHHHHhccC------------CCCCchHHHHHH
Confidence 47778432 234456678889999999999999997622 236999887543
No 91
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=52.07 E-value=6.4 Score=34.93 Aligned_cols=32 Identities=41% Similarity=0.951 Sum_probs=26.3
Q ss_pred CccccCCCCCCCcccCCCCccccC--CCCCccccccCCCCCC
Q 003972 577 GCVICRSHDFSAATFDDRTVIYCD--QCEKEFHVGCLRKNGL 616 (782)
Q Consensus 577 ~C~vC~~~d~s~~~~~~~~lL~Cd--qCer~yHv~CL~~~g~ 616 (782)
.|.+|++. .+..+.|. .|.+.||+.|....+.
T Consensus 38 ~C~~C~~~--------~Ga~i~C~~~~C~~~fH~~CA~~~~~ 71 (90)
T PF13771_consen 38 KCSICKKK--------GGACIGCSHPGCSRSFHVPCARKAGC 71 (90)
T ss_pred CCcCCCCC--------CCeEEEEeCCCCCcEEChHHHccCCe
Confidence 59999964 36788998 5999999999987664
No 92
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=52.04 E-value=19 Score=33.17 Aligned_cols=44 Identities=14% Similarity=0.066 Sum_probs=29.8
Q ss_pred eEEEEEeeCCEEEEEEEEEee--Cceeeeeeeecccccccccccccc
Q 003972 736 MYSVILTVKSVVVSAGLLRIF--GREVAELPLVATCREYQGKVCIQH 780 (782)
Q Consensus 736 fY~avLe~~~evVSaA~lRv~--G~~vAElPlVaT~~~~r~qG~cr~ 780 (782)
+|.++...++++|....|+.. ....|||-+. ..++|||+|+...
T Consensus 58 ~~~i~~~~~~~~iG~i~~~~~~~~~~~~eig~~-i~~~~~g~G~~~~ 103 (142)
T PF13302_consen 58 YFAIEDKDDGEIIGFIGLYNIDKNNNWAEIGYW-IGPDYRGKGYGTE 103 (142)
T ss_dssp EEEEEETTTTEEEEEEEEEEEETTTTEEEEEEE-EEGGGTTSSHHHH
T ss_pred EEEEEeccCCceEEEeeeeecccCCCccccccc-hhHHHHhhhHHHH
Confidence 344444444588777666333 5788999954 7777999999753
No 93
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.86 E-value=9.5 Score=42.94 Aligned_cols=43 Identities=33% Similarity=0.762 Sum_probs=29.1
Q ss_pred ccccccCC---CCceeecCCCCCcccccccCCCCCCCCCccCcCCCC
Q 003972 509 DMCHVCGD---GENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQ 552 (782)
Q Consensus 509 d~C~vCgd---gG~Ll~Cd~Cp~afH~~CL~~~~vP~g~W~C~~C~~ 552 (782)
+.|.||-+ .|+.|.==-|.-.||..|+++..... .-+||.|+.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~-r~~CPvCK~ 275 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT-RTFCPVCKR 275 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc-CccCCCCCC
Confidence 59999975 35544445688899999999832221 335777764
No 94
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=50.67 E-value=6.9 Score=33.99 Aligned_cols=29 Identities=28% Similarity=0.684 Sum_probs=12.0
Q ss_pred ccccccCC----CCc--eeecC--CCCCcccccccCC
Q 003972 509 DMCHVCGD----GEN--LLLCN--GCPLAFHAACLDP 537 (782)
Q Consensus 509 d~C~vCgd----gG~--Ll~Cd--~Cp~afH~~CL~~ 537 (782)
..|.||.. .++ .+.|+ .|...||..||.-
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~ 39 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSE 39 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHH
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHH
Confidence 46889953 232 47897 7999999999973
No 95
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=50.05 E-value=19 Score=35.62 Aligned_cols=43 Identities=19% Similarity=0.167 Sum_probs=31.2
Q ss_pred EEEEeeCCEEEEEEEEEeeC--ceeeeeeeeccccccccccccccC
Q 003972 738 SVILTVKSVVVSAGLLRIFG--REVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 738 ~avLe~~~evVSaA~lRv~G--~~vAElPlVaT~~~~r~qG~cr~L 781 (782)
..+++.++++|..+.+.... ...+|+= ++..++|||+|+.+.|
T Consensus 59 ~~~i~~~g~~iG~~~~~~~~~~~~~~~~~-~~v~~~~~g~G~g~~l 103 (186)
T PRK15130 59 RFVVECDGEKAGLVELVEINHVHRRAEFQ-IIISPEYQGKGLATRA 103 (186)
T ss_pred EEEEEECCEEEEEEEEEeecCCCCeEEEE-EEECHHHcCCCHHHHH
Confidence 33556789999999875542 3356764 7788999999998753
No 96
>PRK10514 putative acetyltransferase; Provisional
Probab=48.88 E-value=16 Score=34.34 Aligned_cols=37 Identities=14% Similarity=0.011 Sum_probs=26.7
Q ss_pred EEeeCCEEEEEEEEEeeCceeeeeeeeccccccccccccccC
Q 003972 740 ILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 740 vLe~~~evVSaA~lRv~G~~vAElPlVaT~~~~r~qG~cr~L 781 (782)
+.+.++++|+...++- .++--+++.++|||||+.++|
T Consensus 54 ~~~~~~~~iG~~~~~~-----~~~~~~~v~p~~rgkGig~~L 90 (145)
T PRK10514 54 AVDERDQPVGFMLLSG-----GHMEALFVDPDVRGCGVGRML 90 (145)
T ss_pred EEecCCcEEEEEEEec-----CcEeEEEECHHhccCCHHHHH
Confidence 3455788988776642 223358899999999998865
No 97
>PHA00673 acetyltransferase domain containing protein
Probab=48.00 E-value=24 Score=35.50 Aligned_cols=45 Identities=9% Similarity=-0.077 Sum_probs=35.6
Q ss_pred EEEEEeeCCEEEEEEEEEee------CceeeeeeeeccccccccccccccC
Q 003972 737 YSVILTVKSVVVSAGLLRIF------GREVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 737 Y~avLe~~~evVSaA~lRv~------G~~vAElPlVaT~~~~r~qG~cr~L 781 (782)
.-+|.+.+++||+.+.+-+- |...|-|=.|-.++++||||..++|
T Consensus 56 ~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~~~~RGqGIG~~L 106 (154)
T PHA00673 56 HFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTESIFVAAAHRPGGAGMAL 106 (154)
T ss_pred EEEEEEECCEEEEEEEEEEecCCccCCccEEEEEEEEEChhccCCCHHHHH
Confidence 34455668999998877542 4677788899999999999998876
No 98
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=43.84 E-value=15 Score=35.49 Aligned_cols=36 Identities=31% Similarity=0.302 Sum_probs=28.6
Q ss_pred EEEEEEEEE-eeCce----eeeeeeeccccccccccccccC
Q 003972 746 VVVSAGLLR-IFGRE----VAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 746 evVSaA~lR-v~G~~----vAElPlVaT~~~~r~qG~cr~L 781 (782)
+++.....+ +.|.. -++|--||+.++|||||..++|
T Consensus 72 ~~~G~~~~~~~~~~~~~~~~~~i~~iaV~p~~r~~Gig~~L 112 (177)
T COG0456 72 KVVGFLLVRVVDGRPSADHEGHIYNLAVDPEYRGRGIGRAL 112 (177)
T ss_pred ceeEEEEEEEecCCccccCccEEEEEEEChHhhcCCHHHHH
Confidence 466666664 45543 7899999999999999999876
No 99
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=43.74 E-value=13 Score=34.44 Aligned_cols=31 Identities=32% Similarity=0.831 Sum_probs=26.4
Q ss_pred CcccccccCC-CCceeecCC--CCCcccccccCC
Q 003972 507 SDDMCHVCGD-GENLLLCNG--CPLAFHAACLDP 537 (782)
Q Consensus 507 ndd~C~vCgd-gG~Ll~Cd~--Cp~afH~~CL~~ 537 (782)
....|.+|+. .|-.+-|.. |..+||..|...
T Consensus 54 ~~~~C~iC~~~~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 54 FKLKCSICGKSGGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred cCCcCcCCCCCCceeEEcCCCCCCcCCCHHHHHH
Confidence 4568999987 588999987 999999999764
No 100
>PF07943 PBP5_C: Penicillin-binding protein 5, C-terminal domain; InterPro: IPR012907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry contains proteins that are annotated as penicillin-binding protein 5 and 6. These belong to MEROPS peptidase family S11 (D-Ala-D-Ala carboxypeptidase A family, clan SE). Penicillin-binding protein 5 expressed by Escherichia coli functions as a D-alanyl-D-alanine carboxypeptidase. It is composed of two domains that are oriented at approximately right angles to each other. The N-terminal domain (IPR001967 from INTERPRO) is the catalytic domain. The C-terminal domain, this entry, is organised into a sandwich of two anti-parallel beta-sheets, and has a relatively hydrophobic surface as compared to the N-terminal domain. Its precise function is unknown; it may mediate interactions with other cell wall-synthesising enzymes, thus allowing the protein to be recruited to areas of active cell wall synthesis. It may also function as a linker domain that positions the active site in the catalytic domain closer to the peptidoglycan layer, to allow it to interact with cell wall peptides []. ; GO: 0009002 serine-type D-Ala-D-Ala carboxypeptidase activity, 0006508 proteolysis; PDB: 3A3J_A 3MFD_B 1XP4_D 3MZD_A 1NZU_A 1NJ4_A 1Z6F_A 3MZF_A 1NZO_A 3MZE_A ....
Probab=42.60 E-value=27 Score=30.77 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=23.8
Q ss_pred CEEEEEEEEEeeCceeeeeeeeccccc
Q 003972 745 SVVVSAGLLRIFGREVAELPLVATCRE 771 (782)
Q Consensus 745 ~evVSaA~lRv~G~~vAElPlVaT~~~ 771 (782)
|++|.-+.+..-|..++++||+|+..-
T Consensus 63 G~~vG~~~v~~~~~~i~~vpL~a~~~v 89 (91)
T PF07943_consen 63 GQVVGTLTVYLDGKLIGEVPLVASEDV 89 (91)
T ss_dssp TSEEEEEEEEETTEEEEEEEEEESS-B
T ss_pred CCEEEEEEEEECCEEEEEEEEEECCcc
Confidence 789999999999999999999998753
No 101
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=41.82 E-value=32 Score=34.49 Aligned_cols=88 Identities=19% Similarity=0.101 Sum_probs=51.7
Q ss_pred hhhhhcccccHHHhhhhhhHhHhhh-hhcccccccccCCCcccceecccCCCCCccCceEEEEEeeCCEEEEEEEEEeeC
Q 003972 679 WQMLKKAQCFEEKEKSLLSSATAIF-RECFDPIIAECGRDLIPVMVYGRNISGQEFGGMYSVILTVKSVVVSAGLLRIFG 757 (782)
Q Consensus 679 W~LLsgk~~~~E~~~s~La~Al~If-~EcF~PIv~~Tg~DlI~~mvy~r~~~~~dF~GfY~avLe~~~evVSaA~lRv~G 757 (782)
|+-..-+.-+...-+.+|..=++|| .|.==|.-+..|.|++.+.=. -.+.+.++++|+ ..|+.=
T Consensus 5 w~~~~~~~Lt~~ely~LlkLRv~VFVVEQ~CPY~E~Dg~Dl~~~~~H-------------l~~~~~~g~LvA--yaRLl~ 69 (155)
T COG2153 5 WQCKHFNDLTVRELYELLKLRVDVFVVEQNCPYPELDGKDLLGDTRH-------------LLGWTPDGELVA--YARLLP 69 (155)
T ss_pred hhhhhhhhcCHHHHHHHHHhheeEEEEecCCCCcCcCCcccccccce-------------EEEEcCCCeEEE--EEecCC
Confidence 4433333333332556666666776 454456666678887554311 112233788865 455554
Q ss_pred ceeeeee----eeccccccccccccccC
Q 003972 758 REVAELP----LVATCREYQGKVCIQHL 781 (782)
Q Consensus 758 ~~vAElP----lVaT~~~~r~qG~cr~L 781 (782)
...++.+ =|+|++++||+|+.|.|
T Consensus 70 ~~~~~~~~~iGRV~v~~~~RG~glG~~L 97 (155)
T COG2153 70 PGAEYEEVSIGRVIVSPAARGQGLGQQL 97 (155)
T ss_pred CCCCcCceeeeeEEECHhhhccchhHHH
Confidence 4444433 58899999999998866
No 102
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=41.48 E-value=18 Score=37.57 Aligned_cols=36 Identities=39% Similarity=0.808 Sum_probs=28.0
Q ss_pred CccccCCCCCCCcccCCCCccccCCCCCccccccCCC
Q 003972 577 GCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRK 613 (782)
Q Consensus 577 ~C~vC~~~d~s~~~~~~~~lL~CdqCer~yHv~CL~~ 613 (782)
.|.+|...+ -.-.|+.+.+..|..|...||..|...
T Consensus 154 iCe~C~~~~-~IfPF~~~~~~~C~~C~~v~H~~C~~~ 189 (202)
T PF13901_consen 154 ICEICNSDD-IIFPFQIDTTVRCPKCKSVFHKSCFRK 189 (202)
T ss_pred CCccCCCCC-CCCCCCCCCeeeCCcCccccchhhcCC
Confidence 378887552 344566778999999999999999963
No 103
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=39.42 E-value=15 Score=37.48 Aligned_cols=57 Identities=21% Similarity=0.577 Sum_probs=35.9
Q ss_pred ccccCCCCCCCcccCCCCccccCCCCCccccccCCCCCC-C-CccccCCCCc-EEcCCchhHH
Q 003972 578 CVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGL-C-DLKEIPKDKW-FCCDDCNRIH 637 (782)
Q Consensus 578 C~vC~~~d~s~~~~~~~~lL~CdqCer~yHv~CL~~~g~-~-~L~eiP~g~W-FCc~~C~~i~ 637 (782)
|.+|+..+. ...-+.|+.|..|..+||..||.+... + -.+.+-.+.+ +=|..|..++
T Consensus 2 C~~C~~~g~---~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~ 61 (175)
T PF15446_consen 2 CDTCGYEGD---DRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIA 61 (175)
T ss_pred cccccCCCC---CccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChh
Confidence 777864321 123578999999999999999976532 1 2334444544 2236676554
No 104
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=39.33 E-value=3.1 Score=32.30 Aligned_cols=40 Identities=30% Similarity=0.769 Sum_probs=24.1
Q ss_pred ccccccCCC----CceeecCCCCCcccccccCCCCCCCCCccCcCCC
Q 003972 509 DMCHVCGDG----ENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCR 551 (782)
Q Consensus 509 d~C~vCgdg----G~Ll~Cd~Cp~afH~~CL~~~~vP~g~W~C~~C~ 551 (782)
|.|.||.+. ...+... |.-.||..|+... -.....||.|+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~--~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEW--LKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHH--HHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHH--HHhCCcCCccC
Confidence 568899753 3444444 9999999998751 11123777774
No 105
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.60 E-value=7.9 Score=42.01 Aligned_cols=49 Identities=31% Similarity=0.616 Sum_probs=32.2
Q ss_pred CCCCcccccccCCC-------Cc---eeecCCCCCcccccccCCCCCCCCCccCcCCCC
Q 003972 504 TGGSDDMCHVCGDG-------EN---LLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQ 552 (782)
Q Consensus 504 ~~~ndd~C~vCgdg-------G~---Ll~Cd~Cp~afH~~CL~~~~vP~g~W~C~~C~~ 552 (782)
...+|..|.+|+.. +. -+.=-.|...||.+|+.-..+--..-.||.|+.
T Consensus 220 khl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKe 278 (328)
T KOG1734|consen 220 KHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKE 278 (328)
T ss_pred CCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHH
Confidence 45688899999853 11 111124889999999975433334457899975
No 106
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=37.86 E-value=41 Score=33.50 Aligned_cols=45 Identities=7% Similarity=0.050 Sum_probs=32.0
Q ss_pred ceEEEEEeeCCEEEEEEEEEeeC---ceeeeeeeecccccccccccccc
Q 003972 735 GMYSVILTVKSVVVSAGLLRIFG---REVAELPLVATCREYQGKVCIQH 780 (782)
Q Consensus 735 GfY~avLe~~~evVSaA~lRv~G---~~vAElPlVaT~~~~r~qG~cr~ 780 (782)
.+|.++++.++++|..+.|...- ...||+=+ .-.++|||||+.+.
T Consensus 76 ~~~~i~~~~~~~~iG~i~l~~~~~~~~~~~eig~-~i~~~~~G~G~~~e 123 (194)
T PRK10809 76 FYFALLDPDEKEIIGVANFSNVVRGSFHACYLGY-SLGQKWQGQGLMFE 123 (194)
T ss_pred EEEEEEECCCCeEEEEEEEEeecCCCeeeEEEEE-EECHHHcCCCHHHH
Confidence 35666666688999998886542 24677664 35799999998764
No 107
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=37.45 E-value=18 Score=31.47 Aligned_cols=34 Identities=32% Similarity=0.700 Sum_probs=12.8
Q ss_pred CccccCCCCCCCcccCCCCccccC--CCCCccccccCCC
Q 003972 577 GCVICRSHDFSAATFDDRTVIYCD--QCEKEFHVGCLRK 613 (782)
Q Consensus 577 ~C~vC~~~d~s~~~~~~~~lL~Cd--qCer~yHv~CL~~ 613 (782)
.|.||...-.. .+....+.|+ +|.+.||..||..
T Consensus 4 ~C~IC~~~~~~---~~~~p~~~C~n~~C~~~fH~~CL~~ 39 (70)
T PF11793_consen 4 ECGICYSYRLD---DGEIPDVVCPNPSCGKKFHLLCLSE 39 (70)
T ss_dssp S-SSS--SS-T---T-----B--S-TT----B-SGGGHH
T ss_pred CCCcCCcEecC---CCCcCceEcCCcccCCHHHHHHHHH
Confidence 48899865321 1233568998 9999999999954
No 108
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=37.17 E-value=17 Score=32.19 Aligned_cols=30 Identities=23% Similarity=0.663 Sum_probs=26.0
Q ss_pred cccccccCCC-CceeecCC--CCCcccccccCC
Q 003972 508 DDMCHVCGDG-ENLLLCNG--CPLAFHAACLDP 537 (782)
Q Consensus 508 dd~C~vCgdg-G~Ll~Cd~--Cp~afH~~CL~~ 537 (782)
...|.+|+.. |-.+-|.. |.+.||..|..-
T Consensus 36 ~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 36 KLKCSICKKKGGACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred CCCCcCCCCCCCeEEEEeCCCCCcEEChHHHcc
Confidence 4579999998 99999955 999999999864
No 109
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=36.81 E-value=34 Score=31.95 Aligned_cols=46 Identities=22% Similarity=0.211 Sum_probs=39.2
Q ss_pred CceEEEEEeeCCEEEEEEEEEeeCceeeeeeeeccccccccccccccC
Q 003972 734 GGMYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 734 ~GfY~avLe~~~evVSaA~lRv~G~~vAElPlVaT~~~~r~qG~cr~L 781 (782)
+|+|+ +..+++++..++-.-.|..+.-++=-.+...+||||..+.|
T Consensus 15 ~~~y~--~~~~G~~~~e~~y~~~~~~~i~i~HT~V~d~lrGqGia~~L 60 (99)
T COG2388 15 NGRYV--LTDEGEVIGEATYYDRGENLIIIDHTYVPDELRGQGIAQKL 60 (99)
T ss_pred ceEEE--EecCCcEEEEEEEecCCCCEEEEecCcCCHHHcCCcHHHHH
Confidence 45664 66778888998888889898999999999999999998876
No 110
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=35.64 E-value=53 Score=30.98 Aligned_cols=39 Identities=8% Similarity=-0.140 Sum_probs=29.5
Q ss_pred EeeCCEEEEEEEEEeeC--ceeeeeeeeccccccccccccccC
Q 003972 741 LTVKSVVVSAGLLRIFG--REVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 741 Le~~~evVSaA~lRv~G--~~vAElPlVaT~~~~r~qG~cr~L 781 (782)
++.++++|..+.+.... ...+++-+. ..+.+| ||+.+.|
T Consensus 56 ~~~~g~~vG~~~~~~~~~~~~~~~~g~~-~~~~~~-~G~g~~~ 96 (156)
T TIGR03585 56 VCQESRPIGVISFTDINLVHKSAFWGIY-ANPFCK-PGVGSVL 96 (156)
T ss_pred EEECCEEEEEEEEEecChhhCeEEEEEE-eChhhh-cCchHHH
Confidence 35689999988887665 456777655 788888 9998753
No 111
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=35.39 E-value=63 Score=30.66 Aligned_cols=48 Identities=8% Similarity=-0.094 Sum_probs=34.8
Q ss_pred cCceEEEEEeeCCEEEEEEEEEe------eCceeeeeeeecccccccccccccc
Q 003972 733 FGGMYSVILTVKSVVVSAGLLRI------FGREVAELPLVATCREYQGKVCIQH 780 (782)
Q Consensus 733 F~GfY~avLe~~~evVSaA~lRv------~G~~vAElPlVaT~~~~r~qG~cr~ 780 (782)
-.+.+..|...++++|.-+.+-- .....+.+=.++..++|||||+.+.
T Consensus 45 ~~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~G~g~~ 98 (152)
T PF13523_consen 45 DPGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGDRGIHRLIVDPEYRGQGLGKA 98 (152)
T ss_dssp TTTEEEEEEEETTEEEEEEEEEEGGGSS---TTEEEEEEEESTGGGTTSSHHHH
T ss_pred cCCceEEEEEECCEEEEEEEEecccccccCCCCEEEEeeeeechhhcCCCHHHH
Confidence 35778899999999999887732 0223444556667999999998775
No 112
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=34.94 E-value=26 Score=41.49 Aligned_cols=47 Identities=23% Similarity=0.385 Sum_probs=39.6
Q ss_pred CCcccccccCCCCceeecCCCCCcccccccCC-CCCC--CCCccCcCCCC
Q 003972 506 GSDDMCHVCGDGENLLLCNGCPLAFHAACLDP-LLIP--ESGWRCPNCRQ 552 (782)
Q Consensus 506 ~ndd~C~vCgdgG~Ll~Cd~Cp~afH~~CL~~-~~vP--~g~W~C~~C~~ 552 (782)
..+.+|..|.-.|.-+.|+.|-+.||..|+.+ ...+ +..|.|+.|..
T Consensus 58 N~d~~cfechlpg~vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~s 107 (588)
T KOG3612|consen 58 NIDPFCFECHLPGAVLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPYS 107 (588)
T ss_pred CCCcccccccCCcceeeeehhhccccccccCcchhhccccccccCCcccc
Confidence 34568999999999999999999999999998 2333 57899999976
No 113
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=34.43 E-value=40 Score=37.06 Aligned_cols=46 Identities=7% Similarity=-0.028 Sum_probs=37.3
Q ss_pred ceEEEEEee---CCEEEEEEEEEeeCceeeeeeeeccccccccccccccC
Q 003972 735 GMYSVILTV---KSVVVSAGLLRIFGREVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 735 GfY~avLe~---~~evVSaA~lRv~G~~vAElPlVaT~~~~r~qG~cr~L 781 (782)
..|++.+.. ++.||+.++++..+. .+++--++.+..|||+|+.++|
T Consensus 230 ~~~~~~~~d~~gd~givG~~~~~~~~~-~~~I~~l~vs~r~~grGig~~L 278 (320)
T TIGR01686 230 EIVTVSMSDRFGDSGIIGIFVFEKKEG-NLFIDDLCMSCRALGRGVETRM 278 (320)
T ss_pred CEEEEEEEecCCCCceEEEEEEEecCC-cEEEEEEEEcHhHhcCcHHHHH
Confidence 467777653 578999999987654 5789999999999999998765
No 114
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=34.42 E-value=41 Score=40.16 Aligned_cols=46 Identities=7% Similarity=-0.075 Sum_probs=32.6
Q ss_pred eEEEEEe--eCCEEEEEEEEEeeC------ceeeeeeeeccccccccccccccC
Q 003972 736 MYSVILT--VKSVVVSAGLLRIFG------REVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 736 fY~avLe--~~~evVSaA~lRv~G------~~vAElPlVaT~~~~r~qG~cr~L 781 (782)
.+..|.+ .+++||..+..-.+. ...+++=-|++.++|||||+.++|
T Consensus 123 ~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~~~~i~~l~V~P~~Rg~GIG~~L 176 (547)
T TIGR03103 123 ITYLVAEDEASGAIIGTVMGVDHRKAFNDPEHGSSLWCLAVDPQAAHPGVGEAL 176 (547)
T ss_pred ceEEEEEECCCCeEEEEEEEEeccccccCCCCCeEEEEEEECHHHcCCCHHHHH
Confidence 3444444 379999998753332 224677789999999999999876
No 115
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=32.78 E-value=30 Score=43.73 Aligned_cols=46 Identities=39% Similarity=1.115 Sum_probs=37.5
Q ss_pred CcccccccCCCC--ceeecCCCCCcccccccCC--CCCCCCCccCcCCCC
Q 003972 507 SDDMCHVCGDGE--NLLLCNGCPLAFHAACLDP--LLIPESGWRCPNCRQ 552 (782)
Q Consensus 507 ndd~C~vCgdgG--~Ll~Cd~Cp~afH~~CL~~--~~vP~g~W~C~~C~~ 552 (782)
....|..|..+. .++.|++|...+|..|..+ +.++++.|.|+.|..
T Consensus 154 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (904)
T KOG1246|consen 154 DYPQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIP 203 (904)
T ss_pred cchhhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCcccc
Confidence 345688886654 3449999999999999997 678899999999976
No 116
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=32.37 E-value=26 Score=39.48 Aligned_cols=45 Identities=22% Similarity=0.573 Sum_probs=34.3
Q ss_pred CccccCCCCCcccccc--CCCCCCCCccccCCCCcEEcCCchhHHHHHHhh
Q 003972 595 TVIYCDQCEKEFHVGC--LRKNGLCDLKEIPKDKWFCCDDCNRIHAALQDF 643 (782)
Q Consensus 595 ~lL~CdqCer~yHv~C--L~~~g~~~L~eiP~g~WFCc~~C~~i~~~Lqkl 643 (782)
.++.|+.|..|||..| +.. ......+...|+| ..|+.....++..
T Consensus 74 ~~~~cd~C~~~~~~ec~~v~~---~~~e~p~~~~~~c-~~c~~~~~~~~~~ 120 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECWEVGT---AEKEAPKEDPKVC-DECKEAQDGMSES 120 (345)
T ss_pred hhhccccccccccccccccCc---hhhcCCccccccc-cccchhhhhhhhh
Confidence 6789999999999999 543 2344455679999 9999887655543
No 117
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=32.24 E-value=71 Score=30.17 Aligned_cols=46 Identities=22% Similarity=0.280 Sum_probs=33.4
Q ss_pred CceEEEEEeeCCEEEEEEEEEeeC--ceeeeeeeeccccccccccccccC
Q 003972 734 GGMYSVILTVKSVVVSAGLLRIFG--REVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 734 ~GfY~avLe~~~evVSaA~lRv~G--~~vAElPlVaT~~~~r~qG~cr~L 781 (782)
..+|.+.- .+|++|..+.++-.- ...||+=++-. .+||++|+.+.|
T Consensus 50 ~~~~~v~~-~~g~iiG~~~~~~~~~~~~~~~~~~~v~-~~~~~~gig~~l 97 (155)
T PF13420_consen 50 QRLFLVAE-EDGKIIGYVSLRDIDPYNHTAELSIYVS-PDYRGKGIGRKL 97 (155)
T ss_dssp TEEEEEEE-CTTEEEEEEEEEESSSGTTEEEEEEEEE-GGGTTSSHHHHH
T ss_pred CcEEEEEE-cCCcEEEEEEEEeeeccCCEEEEeeEEC-hhHCCCcHHHHH
Confidence 33444443 799999999998543 34788875555 999999998764
No 118
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=32.20 E-value=39 Score=29.78 Aligned_cols=40 Identities=15% Similarity=0.076 Sum_probs=29.5
Q ss_pred EeeCCEEEEEEEEEeeCceeeeeeeeccccccccccccccC
Q 003972 741 LTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKVCIQHL 781 (782)
Q Consensus 741 Le~~~evVSaA~lRv~G~~vAElPlVaT~~~~r~qG~cr~L 781 (782)
|..+++.++....+. +..+-.+-=.-+.+++||||+.+.|
T Consensus 4 ~~~~g~~~a~l~Y~~-~~~~~~i~hT~V~~~~rGqGia~~L 43 (78)
T PF14542_consen 4 LKDDGEEIAELTYRE-DGGVIVITHTEVPPELRGQGIAKKL 43 (78)
T ss_dssp EESSTTEEEEEEEEE-SSSEEEEEEEEE-CSSSTTTHHHHH
T ss_pred EEECCEEEEEEEEEe-CCCEEEEEEEEECccccCCcHHHHH
Confidence 455688888888888 4455556666678899999998765
No 119
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=30.20 E-value=23 Score=32.50 Aligned_cols=37 Identities=24% Similarity=0.322 Sum_probs=28.9
Q ss_pred EEeeCCEEEEEEEEEeeCceeeeeeeecccccccccccccc
Q 003972 740 ILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKVCIQH 780 (782)
Q Consensus 740 vLe~~~evVSaA~lRv~G~~vAElPlVaT~~~~r~qG~cr~ 780 (782)
||--.|..||=.+. .+.+||=.-.|-++|||||+.+.
T Consensus 3 llgpeG~PVSW~lm----dqtge~rmgyTlPeyR~~G~~~~ 39 (89)
T PF08444_consen 3 LLGPEGNPVSWSLM----DQTGEMRMGYTLPEYRGQGLMSQ 39 (89)
T ss_pred ccCCCCCEeEEEEe----cccccccccccCHhHhcCCHHHH
Confidence 44556777777664 56689999999999999999764
No 120
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=27.85 E-value=81 Score=30.90 Aligned_cols=37 Identities=11% Similarity=0.017 Sum_probs=27.9
Q ss_pred eCCEEEEEEEEEeeC--ceeeeeeeecccccccccccccc
Q 003972 743 VKSVVVSAGLLRIFG--REVAELPLVATCREYQGKVCIQH 780 (782)
Q Consensus 743 ~~~evVSaA~lRv~G--~~vAElPlVaT~~~~r~qG~cr~ 780 (782)
.++++|..+.|.... ..-||+=+ ...++||||||...
T Consensus 74 ~~~~~iG~~~l~~~~~~~~~~~ig~-~i~~~~~g~G~~te 112 (179)
T PRK10151 74 KEDELIGVLSFNRIEPLNKTAYIGY-WLDESHQGQGIISQ 112 (179)
T ss_pred ECCEEEEEEEEEeeccCCCceEEEE-EEChhhcCCcHHHH
Confidence 478999999876542 34688766 46899999999763
No 121
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=27.83 E-value=45 Score=34.71 Aligned_cols=39 Identities=26% Similarity=0.859 Sum_probs=30.4
Q ss_pred CcccccccCCC--------CceeecCCCCCcccccccCCCCCCCCCccCcCCCC
Q 003972 507 SDDMCHVCGDG--------ENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQ 552 (782)
Q Consensus 507 ndd~C~vCgdg--------G~Ll~Cd~Cp~afH~~CL~~~~vP~g~W~C~~C~~ 552 (782)
...+|.+|.+. .....|..|...||..|... -.||.|..
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~-------~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK-------KSCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC-------CCCCCcHh
Confidence 35689999864 35788999999999999973 23898864
No 122
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.64 E-value=74 Score=38.29 Aligned_cols=48 Identities=21% Similarity=0.414 Sum_probs=30.4
Q ss_pred CCccCcCCCCCCCCCccccccccCCCCCCCccccCccccCCCCCCCcccCCCCccccCCCCCccccccCCC
Q 003972 543 SGWRCPNCRQGHSSSMSRSVDLKGGLEAPGAEVGGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRK 613 (782)
Q Consensus 543 g~W~C~~C~~~~~~~~s~pi~l~r~~k~~~~e~~~C~vC~~~d~s~~~~~~~~lL~CdqCer~yHv~CL~~ 613 (782)
..|||+.|..- -....-.+.|.-|+..+ ..==+|+.|++.|.+.++..
T Consensus 125 ~~~Yc~~~e~f---------------l~dr~v~g~cp~cg~~~--------arGD~Ce~Cg~~~~P~~l~~ 172 (558)
T COG0143 125 EGLYCVSCERF---------------LPDRYVEGTCPKCGGED--------ARGDQCENCGRTLDPTELIN 172 (558)
T ss_pred eeeEccccccc---------------ccchheeccCCCcCccc--------cCcchhhhccCcCCchhcCC
Confidence 46999999651 00111235688888432 11137999999999988643
No 123
>PF10187 Nefa_Nip30_N: N-terminal domain of NEFA-interacting nuclear protein NIP30; InterPro: IPR019331 This is a the N-terminal 100 amino acids of a family of proteins conserved from plants to humans. The full-length protein has putatively been called NEFA-interacting nuclear protein NIP30, however no reference could be found to confirm this.
Probab=27.43 E-value=46 Score=31.23 Aligned_cols=26 Identities=35% Similarity=0.423 Sum_probs=22.9
Q ss_pred cCCCcHHHHHHHHHhCCchhHHHHHH
Q 003972 285 ENGKPIYSIIQELKTAPLGILEEVVK 310 (782)
Q Consensus 285 enG~sL~~v~~a~k~~~l~~L~~~i~ 310 (782)
.+|||||++||+=|.+....++++++
T Consensus 35 ~d~rsLye~LqenK~~Kq~efeE~~K 60 (102)
T PF10187_consen 35 YDGRSLYERLQENKAAKQEEFEEKHK 60 (102)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 37999999999999998888888776
No 124
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=26.38 E-value=21 Score=25.74 Aligned_cols=28 Identities=25% Similarity=0.647 Sum_probs=12.0
Q ss_pred ccccCCCCCCCcccCCCCccccCCCCCccccccC
Q 003972 578 CVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCL 611 (782)
Q Consensus 578 C~vC~~~d~s~~~~~~~~lL~CdqCer~yHv~CL 611 (782)
|.+|++.. ++.....|.+|+-..|..|.
T Consensus 3 C~~C~~~~------~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 3 CDACGKPI------DGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp -TTTS----------S--EEE-TTT-----HHHH
T ss_pred CCcCCCcC------CCCceEECccCCCccChhcC
Confidence 78888764 22367889999999998873
No 125
>PF13066 DUF3929: Protein of unknown function (DUF3929)
Probab=25.79 E-value=61 Score=27.24 Aligned_cols=28 Identities=32% Similarity=0.287 Sum_probs=22.4
Q ss_pred cccCCCcHHHHHHHHHhCCchhHHHHHH
Q 003972 283 YLENGKPIYSIIQELKTAPLGILEEVVK 310 (782)
Q Consensus 283 ~lenG~sL~~v~~a~k~~~l~~L~~~i~ 310 (782)
+||||+++.||-+.|-.---.||+.+--
T Consensus 4 ~leng~~ikdikefcyrd~~k~lervah 31 (65)
T PF13066_consen 4 HLENGETIKDIKEFCYRDQGKMLERVAH 31 (65)
T ss_pred EccCCcChHHHHHHHhhhhhHHHHHHHH
Confidence 7999999999998887777777765433
No 126
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=25.69 E-value=47 Score=42.03 Aligned_cols=48 Identities=29% Similarity=0.902 Sum_probs=38.2
Q ss_pred CccccCCCCCCCcccCCCCccccCCCCCccccccCCCCCCCCccccCCCCcEEcCCchhH
Q 003972 577 GCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNRI 636 (782)
Q Consensus 577 ~C~vC~~~d~s~~~~~~~~lL~CdqCer~yHv~CL~~~g~~~L~eiP~g~WFCc~~C~~i 636 (782)
.|..|.+.. ++..+ .|+.|.+.||..|..+ ++..++.+.|.| ..|...
T Consensus 157 ~~~~~~k~~------~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~ 204 (904)
T KOG1246|consen 157 QCNTCSKGK------EEKLL-LCDSCDDSYHTYCLRP----PLTRVPDGDWRC-PKCIPT 204 (904)
T ss_pred hhhccccCC------Cccce-ecccccCcccccccCC----CCCcCCcCcccC-Cccccc
Confidence 477787653 23334 9999999999999988 788999999996 777655
No 127
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=22.66 E-value=7.7 Score=44.46 Aligned_cols=28 Identities=21% Similarity=0.532 Sum_probs=21.8
Q ss_pred ccccccCCC--CceeecCCCCCcccccccC
Q 003972 509 DMCHVCGDG--ENLLLCNGCPLAFHAACLD 536 (782)
Q Consensus 509 d~C~vCgdg--G~Ll~Cd~Cp~afH~~CL~ 536 (782)
.+|.-|+.+ |+-.-|..=++-||..|..
T Consensus 275 ~iC~~C~K~V~g~~~ac~Am~~~fHv~CFt 304 (468)
T KOG1701|consen 275 GICAFCHKTVSGQGLAVEAMDQLFHVQCFT 304 (468)
T ss_pred hhhhhcCCcccCcchHHHHhhhhhccccee
Confidence 379999875 6777787778899988864
No 128
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=20.63 E-value=23 Score=30.90 Aligned_cols=26 Identities=31% Similarity=0.727 Sum_probs=16.8
Q ss_pred CCCCCcccccccCCCCCCCCCccCcCCC
Q 003972 524 NGCPLAFHAACLDPLLIPESGWRCPNCR 551 (782)
Q Consensus 524 d~Cp~afH~~CL~~~~vP~g~W~C~~C~ 551 (782)
..|.-.||..|+.. +-.....||.|+
T Consensus 48 ~~C~H~FH~~Ci~~--Wl~~~~~CP~CR 73 (73)
T PF12678_consen 48 GPCGHIFHFHCISQ--WLKQNNTCPLCR 73 (73)
T ss_dssp ETTSEEEEHHHHHH--HHTTSSB-TTSS
T ss_pred cccCCCEEHHHHHH--HHhcCCcCCCCC
Confidence 34899999999964 222233788774
No 129
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=20.41 E-value=67 Score=37.22 Aligned_cols=34 Identities=21% Similarity=0.589 Sum_probs=21.5
Q ss_pred CccccCCCCCCCcccCCCCccccCCCCCccccccCC
Q 003972 577 GCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLR 612 (782)
Q Consensus 577 ~C~vC~~~d~s~~~~~~~~lL~CdqCer~yHv~CL~ 612 (782)
.|.+|++......+.++ .+.=..=+|-||+.|.+
T Consensus 396 rCs~C~~PI~P~~G~~e--tvRvvamdr~fHv~CY~ 429 (468)
T KOG1701|consen 396 RCSVCGNPILPRDGKDE--TVRVVAMDRDFHVNCYK 429 (468)
T ss_pred chhhccCCccCCCCCcc--eEEEEEcccccccccee
Confidence 49999987654433222 23333447899999975
No 130
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=20.31 E-value=67 Score=22.14 Aligned_cols=10 Identities=40% Similarity=1.418 Sum_probs=7.9
Q ss_pred CCccCcCCCC
Q 003972 543 SGWRCPNCRQ 552 (782)
Q Consensus 543 g~W~C~~C~~ 552 (782)
|+|.|+.|..
T Consensus 1 g~W~C~~C~~ 10 (26)
T smart00547 1 GDWECPACTF 10 (26)
T ss_pred CcccCCCCCC
Confidence 5799999954
No 131
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=20.30 E-value=35 Score=31.18 Aligned_cols=15 Identities=33% Similarity=0.939 Sum_probs=11.9
Q ss_pred cCCCCCccccccCCC
Q 003972 599 CDQCEKEFHVGCLRK 613 (782)
Q Consensus 599 CdqCer~yHv~CL~~ 613 (782)
-.+|...||..|+..
T Consensus 49 ~g~C~H~FH~hCI~k 63 (85)
T PF12861_consen 49 WGKCSHNFHMHCILK 63 (85)
T ss_pred eccCccHHHHHHHHH
Confidence 346999999999753
No 132
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.11 E-value=39 Score=38.21 Aligned_cols=46 Identities=28% Similarity=0.685 Sum_probs=29.6
Q ss_pred cCccccCCCCCCCcccCCCCccccCCCCCccccccCCCCCCCCccccCCCCcEEcCCchh
Q 003972 576 GGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNR 635 (782)
Q Consensus 576 ~~C~vC~~~d~s~~~~~~~~lL~CdqCer~yHv~CL~~~g~~~L~eiP~g~WFCc~~C~~ 635 (782)
..|.||-... ..+..+.=--|...||..|.++ ++ .. -.-|| +.|++
T Consensus 230 ~~CaIClEdY------~~GdklRiLPC~H~FH~~CIDp-WL---~~---~r~~C-PvCK~ 275 (348)
T KOG4628|consen 230 DTCAICLEDY------EKGDKLRILPCSHKFHVNCIDP-WL---TQ---TRTFC-PVCKR 275 (348)
T ss_pred ceEEEeeccc------ccCCeeeEecCCCchhhccchh-hH---hh---cCccC-CCCCC
Confidence 3799998642 2333333368999999999976 21 11 12267 89977
Done!