BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003973
(782 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LGZ|A Chain A, Solution Structure Of Stt3p
Length = 273
Score = 205 bits (521), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 110/219 (50%), Positives = 142/219 (64%), Gaps = 6/219 (2%)
Query: 536 HCVWAAAEAYSAPSIVLTSYTHEG-LHVFDDFREAYAWLRHNTEVDDKVASWWDYGYQTT 594
H W AYS+PS+VL S T +G L + DDFREAY WLR N++ D KVA+WWDYGYQ
Sbjct: 20 HSTWVTRTAYSSPSVVLPSQTPDGKLALIDDFREAYYWLRMNSDEDSKVAAWWDYGYQIG 79
Query: 595 AMANRTVIVDNNTWNNTHIATVGTAMSSPEKAAWEIFNSLDXXXXXXXXXXXXXXPSDDI 654
MA+RT +VDNNTWNNTHIA VG A +SPE+ ++EI D DDI
Sbjct: 80 GMADRTTLVDNNTWNNTHIAIVGKANASPEEKSYEILKEHDVDYVLVIFGGLIGFGGDDI 139
Query: 655 NKFLWMVRIGGGVFP-HIKEPD-YLRDGQYRIDSQATPTMLNCLMYKLSYYRFVE--TDG 710
NKFLW +RI G++P IKE D Y +G+YR+D++A+ TM N L+YK+SY F + G
Sbjct: 140 NKFLWNIRISEGIWPEEIKERDFYTAEGEYRVDARASETMRNSLLYKMSYKDFPQLFNGG 199
Query: 711 KGFDRVRRTEIGK-KYFKLTHFEEVFTTHHWMVRIYKLK 748
+ DRVR+ I L +F+EVFT+ +W VRIY+LK
Sbjct: 200 QATDRVRQQMITPLDVPPLDYFDEVFTSENWNVRIYQLK 238
>pdb|3VU0|A Chain A, Crystal Structure Of The C-terminal Globular Domain Of
Oligosaccharyltransferase (afaglb-s2, Af_0040,
O30195_arcfu) From Archaeoglobus Fulgidus
pdb|3VU0|B Chain B, Crystal Structure Of The C-terminal Globular Domain Of
Oligosaccharyltransferase (afaglb-s2, Af_0040,
O30195_arcfu) From Archaeoglobus Fulgidus
pdb|3VU0|C Chain C, Crystal Structure Of The C-terminal Globular Domain Of
Oligosaccharyltransferase (afaglb-s2, Af_0040,
O30195_arcfu) From Archaeoglobus Fulgidus
Length = 162
Score = 37.0 bits (84), Expect = 0.046, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 10/70 (14%)
Query: 565 DFREAYAWLRHNTEVDD----------KVASWWDYGYQTTAMANRTVIVDNNTWNNTHIA 614
D++EA W + N E D V SWWDYG +A + V+ +N A
Sbjct: 6 DWKEALNWXKENLEAQDYLKAYEKPDYAVLSWWDYGNWILYVAKKAVVCNNFQAGADDAA 65
Query: 615 TVGTAMSSPE 624
TA S E
Sbjct: 66 KFFTAQSEEE 75
>pdb|3VU1|A Chain A, Crystal Structure Of The C-terminal Globular Domain Of
Oligosaccharyltransferase (phaglb-l, O74088_pyrho) From
Pyrococcus Horikoshii
pdb|3VU1|B Chain B, Crystal Structure Of The C-terminal Globular Domain Of
Oligosaccharyltransferase (phaglb-l, O74088_pyrho) From
Pyrococcus Horikoshii
Length = 506
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 567 REAYAWLRHNTEVDDKVASWWDYGY--QTTAMANRTVIVD 604
+A WLR NT SWWDYGY +++ + NR D
Sbjct: 14 EQALKWLRSNTSKYATATSWWDYGYWIESSLLGNRRASAD 53
>pdb|2ZAI|A Chain A, Crystal Structure Of The Soluble Domain Of Stt3 From P.
Furiosus
pdb|2ZAI|B Chain B, Crystal Structure Of The Soluble Domain Of Stt3 From P.
Furiosus
pdb|2ZAI|C Chain C, Crystal Structure Of The Soluble Domain Of Stt3 From P.
Furiosus
pdb|2ZAI|D Chain D, Crystal Structure Of The Soluble Domain Of Stt3 From P.
Furiosus
Length = 497
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 544 AYSAPSIVLTSYTHEGLHVFDDFREAYAWLRHNTEVDDKVASWWDYGY--QTTAMANRTV 601
A SA S+ T G + +A WLR NT SWWDYGY +++ + R
Sbjct: 5 AQSAKSMRTTEIETSG------WEDALKWLRENTPEYSTATSWWDYGYWIESSLLGQRRA 58
Query: 602 IVD 604
D
Sbjct: 59 SAD 61
>pdb|2ZAG|A Chain A, Crystal Structure Of The Semet-Substituted Soluble Domain
Of Stt3 From P. Furiosus
pdb|2ZAG|B Chain B, Crystal Structure Of The Semet-Substituted Soluble Domain
Of Stt3 From P. Furiosus
pdb|2ZAG|C Chain C, Crystal Structure Of The Semet-Substituted Soluble Domain
Of Stt3 From P. Furiosus
pdb|2ZAG|D Chain D, Crystal Structure Of The Semet-Substituted Soluble Domain
Of Stt3 From P. Furiosus
Length = 497
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 567 REAYAWLRHNTEVDDKVASWWDYGY--QTTAMANRTVIVD 604
+A WLR NT SWWDYGY +++ + R D
Sbjct: 22 EDALKWLRENTPEYSTATSWWDYGYWIESSLLGQRRASAD 61
>pdb|1XCR|A Chain A, Crystal Structure Of Longer Splice Variant Of Ptd012 From
Homo Sapiens Reveals A Novel Zinc-Containing Fold
pdb|1XCR|B Chain B, Crystal Structure Of Longer Splice Variant Of Ptd012 From
Homo Sapiens Reveals A Novel Zinc-Containing Fold
Length = 316
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 343 YASKYIPIIASVSEHQPPTWPSYFMDIN 370
+ S+++P+I + SEH+PP SYF +N
Sbjct: 108 FNSEFMPVIQTESEHKPPVNGSYFAHVN 135
>pdb|3VGP|A Chain A, Crystal Structure Of The C-Terminal Globular Domain Of
Oligosaccharyltransferase (Af_0329) From Archaeoglobus
Fulgidus
Length = 164
Score = 33.5 bits (75), Expect = 0.51, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 10/76 (13%)
Query: 559 GLHVFDDFREAYAWLRHNTEVDD----------KVASWWDYGYQTTAMANRTVIVDNNTW 608
G + +D++EA W R + E + V SWWDYG ++ + V+ +N
Sbjct: 1 GPDLTEDWKEALEWXRTSLEEQNYLNPYEKPEYSVXSWWDYGNWILYVSKKAVVANNFQA 60
Query: 609 NNTHIATVGTAMSSPE 624
A TA S E
Sbjct: 61 GAVDAAKFFTAKSEDE 76
>pdb|3RCE|A Chain A, Bacterial Oligosaccharyltransferase Pglb
Length = 724
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 15/97 (15%)
Query: 508 EKRLLVLPMELSVIGLLLLVFMGAFYVVHCVWAAAEAYSAPSIVLTSYTHEGLHVFDDFR 567
EK+ + L + I L+L+ F + ++ Y S V TSY + +D
Sbjct: 400 EKKQIKLSLRNKNILLILIAFFSISPALMHIY-----YYKSSTVFTSYEAS---ILND-- 449
Query: 568 EAYAWLRHNTEVDDKVASWWDYGYQTTAMANRTVIVD 604
L++ + +D V +WWDYGY ++ ++D
Sbjct: 450 -----LKNKAQREDYVVAWWDYGYPIRYYSDVKTLID 481
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,464,768
Number of Sequences: 62578
Number of extensions: 722814
Number of successful extensions: 1649
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1633
Number of HSP's gapped (non-prelim): 12
length of query: 782
length of database: 14,973,337
effective HSP length: 106
effective length of query: 676
effective length of database: 8,340,069
effective search space: 5637886644
effective search space used: 5637886644
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)