Query 003973
Match_columns 782
No_of_seqs 177 out of 323
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 15:17:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003973.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003973hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2292 Oligosaccharyltransfer 100.0 1E-271 2E-276 2175.7 48.6 720 11-780 12-739 (751)
2 PF02516 STT3: Oligosaccharyl 100.0 5.1E-73 1.1E-77 639.2 -2.9 473 20-606 2-482 (483)
3 COG1287 Uncharacterized membra 100.0 2.9E-67 6.2E-72 624.8 39.2 673 22-752 19-734 (773)
4 TIGR03663 conserved hypothetic 99.3 3.3E-09 7.2E-14 120.5 32.9 167 24-217 3-169 (439)
5 PF10034 Dpy19: Q-cell neurobl 98.7 4.3E-05 9.4E-10 90.7 36.4 369 45-430 13-451 (642)
6 TIGR03662 Chlor_Arch_YYY Chlor 98.2 0.011 2.3E-07 71.7 37.5 79 564-642 593-688 (723)
7 PRK13279 arnT 4-amino-4-deoxy- 98.0 0.0041 8.8E-08 73.3 29.8 145 49-212 30-181 (552)
8 PF02366 PMT: Dolichyl-phospha 98.0 0.00022 4.8E-09 74.6 17.0 97 120-218 87-190 (245)
9 PF13231 PMT_2: Dolichyl-phosp 97.8 0.00045 9.7E-09 66.1 14.7 110 92-209 3-113 (159)
10 TIGR03766 conserved hypothetic 97.6 0.032 7E-07 64.8 27.4 158 28-208 71-233 (483)
11 PF10131 PTPS_related: 6-pyruv 97.6 0.018 3.8E-07 68.9 25.1 115 90-210 3-118 (616)
12 COG1807 ArnT 4-amino-4-deoxy-L 97.4 0.0085 1.8E-07 69.9 19.9 171 27-218 12-185 (535)
13 KOG3359 Dolichyl-phosphate-man 97.2 0.017 3.7E-07 69.0 19.1 186 15-229 28-239 (723)
14 COG1287 Uncharacterized membra 97.0 0.042 9.1E-07 67.4 20.7 48 560-607 474-524 (773)
15 PLN02816 mannosyltransferase 96.6 1.2 2.7E-05 52.8 27.5 118 50-186 62-187 (546)
16 PF03901 Glyco_transf_22: Alg9 96.1 0.98 2.1E-05 51.3 22.5 142 31-190 5-154 (418)
17 COG1928 PMT1 Dolichyl-phosphat 95.7 0.048 1E-06 65.2 10.2 105 120-227 114-225 (699)
18 PF11028 DUF2723: Protein of u 95.4 0.22 4.7E-06 50.8 12.2 127 91-230 20-168 (178)
19 COG5305 Predicted membrane pro 95.2 2.9 6.4E-05 49.6 22.4 116 70-192 67-191 (552)
20 PF09586 YfhO: Bacterial membr 94.9 1.6 3.4E-05 53.9 20.2 61 174-234 99-162 (843)
21 COG4745 Predicted membrane-bou 94.4 0.57 1.2E-05 53.7 13.3 146 26-202 19-168 (556)
22 KOG4587 Predicted membrane pro 92.6 1.5 3.2E-05 50.7 12.7 79 558-642 457-545 (605)
23 PF09971 DUF2206: Predicted me 92.3 3.4 7.4E-05 46.8 15.4 79 356-434 107-202 (367)
24 PF04188 Mannosyl_trans2: Mann 90.9 1.7 3.6E-05 50.3 11.3 69 118-189 115-184 (443)
25 PF11847 DUF3367: Domain of un 88.3 14 0.00031 44.9 16.3 123 78-209 40-169 (680)
26 COG5617 Predicted integral mem 88.1 48 0.001 41.0 20.5 134 48-199 36-173 (801)
27 PF09852 DUF2079: Predicted me 87.3 11 0.00023 43.7 14.4 100 90-202 42-142 (449)
28 KOG4505 Na+/H+ antiporter [Ino 83.9 11 0.00024 42.3 11.5 119 71-191 56-197 (467)
29 PF09586 YfhO: Bacterial membr 83.4 1.3E+02 0.0028 37.5 29.7 77 114-194 88-168 (843)
30 PF09913 DUF2142: Predicted me 82.1 66 0.0014 36.1 17.4 106 77-191 82-189 (389)
31 COG1271 CydA Cytochrome bd-typ 79.3 54 0.0012 38.4 15.5 60 194-253 63-140 (457)
32 COG5650 Predicted integral mem 78.9 6.8 0.00015 46.1 8.2 179 47-262 114-295 (536)
33 PRK15035 cytochrome bd-II oxid 74.8 54 0.0012 38.9 14.1 78 176-253 28-140 (514)
34 PF01654 Bac_Ubq_Cox: Bacteria 74.7 1.4E+02 0.0031 34.8 17.4 80 174-253 20-134 (436)
35 PF02516 STT3: Oligosaccharyl 65.9 2.5E+02 0.0055 32.3 19.5 34 387-420 331-364 (483)
36 PRK15097 cytochrome d terminal 63.9 1.3E+02 0.0028 35.9 14.1 77 177-253 29-140 (522)
37 COG5427 Uncharacterized membra 63.4 9.7 0.00021 43.9 4.7 21 621-641 625-645 (684)
38 COG1480 Predicted membrane-ass 57.8 1.5E+02 0.0033 36.4 13.4 103 92-207 308-413 (700)
39 COG4346 Predicted membrane-bou 56.8 49 0.0011 37.5 8.6 43 117-159 155-199 (438)
40 PF11345 DUF3147: Protein of u 49.1 1.3E+02 0.0029 28.4 9.1 38 124-161 6-44 (108)
41 PF09971 DUF2206: Predicted me 48.9 4.6E+02 0.01 30.0 18.2 65 237-301 148-218 (367)
42 PRK02237 hypothetical protein; 47.7 81 0.0017 30.1 7.3 57 179-254 20-77 (109)
43 COG1480 Predicted membrane-ass 44.0 7.3E+02 0.016 30.9 16.6 104 145-250 307-413 (700)
44 COG3463 Predicted membrane pro 37.5 74 0.0016 37.0 6.4 67 118-187 90-159 (458)
45 PF08229 SHR3_chaperone: ER me 34.3 1.5E+02 0.0032 31.1 7.6 19 419-437 141-159 (196)
46 PF11744 ALMT: Aluminium activ 32.1 6.7E+02 0.015 29.2 13.1 80 93-181 18-102 (406)
47 KOG2647 Predicted Dolichyl-pho 31.9 81 0.0018 36.5 5.6 110 90-202 96-211 (444)
48 PF14264 Glucos_trans_II: Gluc 31.4 7.1E+02 0.015 27.0 15.2 91 78-185 24-119 (319)
49 TIGR00341 conserved hypothetic 31.3 4.1E+02 0.0088 30.0 10.9 107 120-228 144-281 (325)
50 COG5542 Predicted integral mem 29.8 1.8E+02 0.004 33.7 7.9 157 5-186 17-187 (420)
51 COG4485 Predicted membrane pro 29.5 7.6E+02 0.017 30.9 13.1 139 166-307 281-446 (858)
52 TIGR00844 c_cpa1 na(+)/h(+) an 29.4 1.3E+03 0.028 29.4 15.9 19 235-253 33-51 (810)
53 KOG2515 Mannosyltransferase [C 29.3 1.1E+03 0.023 28.4 21.4 43 392-434 304-348 (568)
54 KOG0569 Permease of the major 27.9 4.6E+02 0.01 31.2 11.1 38 194-231 414-451 (485)
55 PF12821 DUF3815: Protein of u 27.3 1.5E+02 0.0032 28.4 5.9 52 120-171 49-102 (130)
56 TIGR02865 spore_II_E stage II 27.3 1.3E+03 0.029 28.9 17.1 22 386-407 238-259 (764)
57 PRK01061 Na(+)-translocating N 25.9 6.4E+02 0.014 27.4 10.7 21 226-246 106-126 (244)
58 PF10131 PTPS_related: 6-pyruv 24.5 1.4E+03 0.029 28.1 30.1 54 172-227 31-92 (616)
59 PRK09776 putative diguanylate 23.5 1.3E+03 0.029 29.2 15.0 18 275-292 76-93 (1092)
60 PF00893 Multi_Drug_Res: Small 23.5 3.3E+02 0.0071 24.6 7.1 59 148-206 7-69 (93)
61 TIGR00844 c_cpa1 na(+)/h(+) an 22.0 1.7E+03 0.037 28.3 16.4 56 128-185 112-190 (810)
62 PRK09776 putative diguanylate 21.8 1.7E+03 0.037 28.2 15.6 26 75-100 24-55 (1092)
63 PRK10255 PTS system N-acetyl g 21.4 2.6E+02 0.0057 34.4 7.7 71 120-208 233-307 (648)
No 1
>KOG2292 consensus Oligosaccharyltransferase, STT3 subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-272 Score=2175.66 Aligned_cols=720 Identities=58% Similarity=1.017 Sum_probs=666.7
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhhcccccccccccccchhHHHHHHHHHHhcCccccccccCCCCcccCceecCccc
Q 003973 11 TLRHAFGNVLSFFILLLIGVLAFSIRLFSVIKYESVIHEFDPYFNYRVTQFLTKNGIYDFWNWFDDRTWYPLGRVIGGTV 90 (782)
Q Consensus 11 ~~~~~~~~ll~~~iL~li~~~af~iRl~sv~~y~~iIhEFDPwfNyR~T~yl~~~G~~~f~nWFD~~sWYPlGR~vg~T~ 90 (782)
...+.++++|+++||+++.++||++|||+|+||||+|||||||||||+|++|+|||||+||||||+++|||+||++|||+
T Consensus 12 ~~~~~~~~ll~~~IL~l~~v~~fssRLFaVirfESiIHEFDP~FNYR~T~~l~~~GfY~F~NWFDdRaWYPLGRiiGGTv 91 (751)
T KOG2292|consen 12 SSRKGQQTLLKLLILVLAAVLSFSSRLFAVIRFESIIHEFDPWFNYRATRFLVENGFYKFLNWFDDRAWYPLGRIIGGTV 91 (751)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhHHHHHHHHhhHHHHHhhcccccccccceeecccc
Confidence 56778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhhcCCCcccceeeeehhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhhhhhhhccccccch
Q 003973 91 YPGLTLTAGTIWWLLNSLNIPLSVETVCVFTAPIFSAFASWATYLLTKEVKGAGAGLTAAALLAMVPSYISRSVAGSYDN 170 (782)
Q Consensus 91 YPgLm~ta~~i~~ll~~lg~~v~i~~vcv~lppvfs~lt~i~~yll~~e~~~~~aGLlAA~~iAI~PgyisRSvaG~yDn 170 (782)
|||||+|+++|||+|+.|++|+||||||||++|+|+++|++++|++|||+++.+|||+||+|+||+||||||||||||||
T Consensus 92 YPGLmiTsg~I~~~L~~L~i~v~Ir~VCVflAP~FSg~TsiaTY~ltkEl~~~gaGL~AA~fiaivPgYiSRSVAGSYDN 171 (751)
T KOG2292|consen 92 YPGLMITSGLIYWVLHFLNIPVHIRNVCVFLAPLFSGLTSIATYLLTKELKSAGAGLLAAAFIAIVPGYISRSVAGSYDN 171 (751)
T ss_pred cchHHHHHHHHHHHHHHcccceeehheeeEechhhhchHHHHHHHHHHHHhcccccHHHHHHHhhCcccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHccCccchhhHHhHHHHHHH
Q 003973 171 EAVAIFALIITFYLYIKTLNTGSLFYATLNAIAYFYMVCSWGGYTFIINLIPMHVLLCIVTGRYSSRLYIAYAPLVVLGT 250 (782)
Q Consensus 171 E~iaif~llltfylwikalktgs~~~a~lagl~y~ymv~aWGGyvFi~nlI~l~~~vl~l~gr~s~rlyvays~~yvlgt 250 (782)
|+||||++++|||||+||+||||++|+.+||++|||||+|||||+||+|+||||+++|+++||||+|+|+||+++|++||
T Consensus 172 E~IAIfal~~T~ylwiKavkTGSifwa~~~aL~YFYMVsaWGGYvFiiNLIPLHVlvlllmGRyS~rlyiaY~t~y~lGt 251 (751)
T KOG2292|consen 172 EGIAIFALLFTYYLWIKAVKTGSIFWAACCALAYFYMVSAWGGYVFIINLIPLHVLVLLLMGRYSSRLYIAYTTFYCLGT 251 (751)
T ss_pred hHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhheeeccceEEEEechHHHHHHHHHhcccccceeeehhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccccceeeccchHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 003973 251 LLAALVPVVGFNAVMTSEHFASFLVFIILHVVALVYYIKGILSPKMFKVAVTLVVSVGLVVCCAVIAILVALVASSPTKG 330 (782)
Q Consensus 251 ll~~~iP~vGf~p~~s~e~~~al~vf~ll~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~p 330 (782)
+++||||||||||++|+|||+|+|||+|+|+++|++|+|.++++++|+.+.+..+..+ .+++++++.+++.+|+++|
T Consensus 252 llsmqipfVGFqpv~tsEHmaa~gVF~L~qi~Af~~y~k~~ls~~~F~~l~~~~v~~~---~~~~~vv~~~Lt~~g~iaP 328 (751)
T KOG2292|consen 252 LLSMQIPFVGFQPVRTSEHMAALGVFGLLQIVAFVDYLKGRLSPKQFQVLFRLVVSLV---GVVVFVVVAALTATGYIAP 328 (751)
T ss_pred HHHccCcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcceecc
Confidence 9999999999999999999999999999999999999999999999999999877665 6677777888999999999
Q ss_pred CchhhhhccCcccccccCCccccccccCCCChhhHHHhhHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHH
Q 003973 331 WSGRSLSLLDPTYASKYIPIIASVSEHQPPTWPSYFMDINVLAFLVPAGIIACFLPLSDASSFVVLYIVTSVYFSGVMVR 410 (782)
Q Consensus 331 ~sgR~~sl~~p~yak~~~PivaSVsEHqPt~w~sff~dl~~l~~~~p~Gl~~~~~~~~d~~~Flily~v~a~Yfa~~mvR 410 (782)
|||||||||||+|||+||||||||||||||+|+|||||+|++++++|+|+|+||++++||++|+++|+|+++|||++|||
T Consensus 329 WtGRfySL~D~~YAK~hIPIIASVSEHQPttW~SfffDlhiLv~lfPaGl~~Cfk~l~De~vFiilY~v~~~YFaGVMVR 408 (751)
T KOG2292|consen 329 WTGRFYSLWDTGYAKIHIPIIASVSEHQPTTWSSFFFDLHILVFLFPAGLYYCFKNLSDERVFIILYGVTSVYFAGVMVR 408 (751)
T ss_pred cccceeeccCCcchhcccceEEeccccCCCchHHHHHHHHHHHHhhhhhHHHhhhhcCCceEEEEehHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCcCCCCCCCCCCCCccccccccchhhhhccccccchhhHH
Q 003973 411 LMLVFAPAACIMSGIALSQAFDVFTRSIKFQLLRILGFSEADAGDGSSANVVPENDAVKVDKSEETIKERPSRKNKKKEK 490 (782)
Q Consensus 411 L~l~laP~v~ilagi~is~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 490 (782)
|||+++|++|+++||++|.++|.+++. .+.+.. .+ +.+++.++|+ +|....+.+ .+++.+
T Consensus 409 LmLtLtP~vCils~ia~S~~~~~y~~~---~~~~~~----~~-----~~~~~~~~d~----~k~~~vk~~----~~~~~~ 468 (751)
T KOG2292|consen 409 LMLTLTPVVCILSGIAFSQLLDTYLKS---DDTKRE----KS-----SISSASAEDE----KKAGKVKSR----SKKQGK 468 (751)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhcc---chhccc----cc-----CCCccccccc----hhhhhhhhh----hhhccc
Confidence 999999999999999999999999874 211100 00 0000111111 110001110 000100
Q ss_pred HHHHHHHHhhhhccchhhhhhhcccchhHHHHHHHHHHHHHHhHhhhHhhhhhcccCCcEEEEeccCCC-cccchhHHHH
Q 003973 491 EQMEKAQAEKTSAKSKTEKRLLVLPMELSVIGLLLLVFMGAFYVVHCVWAAAEAYSAPSIVLTSYTHEG-LHVFDDFREA 569 (782)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~l~~~~~h~~~~~~~aySsPsivl~s~~~~G-~~i~DD~reA 569 (782)
+ . +.++.+++.++++.+++++++|++||+|+|+|||||||||++++++|| ++|.||||||
T Consensus 469 ~----------------~---~~~~~~~~~~~~~~~~~~l~~f~~H~tWvTs~AYSsPSiVL~s~~~dg~r~i~DDFREA 529 (751)
T KOG2292|consen 469 Q----------------T---EGVSLNVASIVILVMAMLLIMFVVHCTWVTSEAYSSPSIVLSSRGNDGSRIIFDDFREA 529 (751)
T ss_pred c----------------c---cCcchhhHHHHHHHHHHHHHHHHheeeeeeccccCCCcEEEEeecCCCCeeeehhhHHH
Confidence 0 0 245566777888888888999999999999999999999999999999 9999999999
Q ss_pred HHHHhhcCCCCCeeeeeccccceeeecccccccccCCCCcchhHhHHhhhhCCCHHHHHHHHhhcCCCEEEEEeCCccCC
Q 003973 570 YAWLRHNTEVDDKVASWWDYGYQTTAMANRTVIVDNNTWNNTHIATVGTAMSSPEKAAWEIFNSLDVKYVLVVFGGLVGY 649 (782)
Q Consensus 570 y~WLr~NTp~da~VmSWWDYGYqIt~manRttlvDNNTwN~thIa~vGk~laS~E~~A~~Ilr~ldvdYVLVifGg~~gy 649 (782)
|+|||+|||+|+||||||||||||++|||||||||||||||||||+|||+|+||||+||||||+||||||||||||++||
T Consensus 530 Y~WLr~NT~~DakvmsWWDYGYQI~gMAnRTtlVDNNTWNNtHIa~VGkAMsS~EekayeImr~lDVdYVLVIFGG~iGY 609 (751)
T KOG2292|consen 530 YYWLRQNTPEDAKVMSWWDYGYQIAGMANRTTLVDNNTWNNTHIATVGKAMSSPEEKAYEIMRELDVDYVLVIFGGLIGY 609 (751)
T ss_pred HHHHHhCCcccchhhhhhhccchhhhcccceEEeecCcccchHHHHHHhhcCCcHHHHHHHHHHcCCCEEEEEecccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHhcCCCCC-CCCCCCccc-CCccccCCCCCHhHHHHHhhhhhhccccc-----CCCcccccccceecc
Q 003973 650 PSDDINKFLWMVRIGGGVFP-HIKEPDYLR-DGQYRIDSQATPTMLNCLMYKLSYYRFVE-----TDGKGFDRVRRTEIG 722 (782)
Q Consensus 650 sgdDinKflWMvRIa~~~~p-~i~e~dy~~-~g~y~vd~~~s~~m~~sLmYkl~yy~f~~-----~~~~g~D~~r~~~i~ 722 (782)
||||||||+||+|||+|+|| ||+|+|||+ +||||||+++||+|+||||||||||||+| ++++||||+||+|||
T Consensus 610 ssDDINKFLWMvRI~~g~~p~~IkE~dy~t~~GEfRvD~~asptmlNcLmYKmsYyrfge~~~~~~~~~GyDR~R~~eIg 689 (751)
T KOG2292|consen 610 SSDDINKFLWMVRIGGGEHPKHIKERDYFTPTGEFRVDAEASPTMLNCLMYKMSYYRFGELYTEFNGPPGYDRVRNAEIG 689 (751)
T ss_pred CcchhhhhheeeeecCCcChhhcccccccCCCCceecCCCCCHHHHHHHHHHHHhhhhhhhccccCCCCCcchhhhhhcC
Confidence 99999999999999999999 999999999 89999999999999999999999999999 789999999999999
Q ss_pred ccCCCCCcceeeeeccCcEEEEEEecCCCccccccccccCCCCCCCCccccCCcCCCC
Q 003973 723 KKYFKLTHFEEVFTTHHWMVRIYKLKPSKNRIRGKMKKSKSRTSTPSSKRSGSRKKNP 780 (782)
Q Consensus 723 ~~~~~l~~~ee~ftS~~w~VRiykvk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (782)
+||++|+|||||||||||+|||||||||+ +.++|. +++++.+++++||||
T Consensus 690 ~Kd~~L~~~EEayTtehwlVRiYkvK~p~-------~~~~r~-~~~~~~~s~~~k~~r 739 (751)
T KOG2292|consen 690 NKDFKLDHLEEAYTTEHWLVRIYKVKKPN-------RGLGRT-LPAVKLKSKKSKKKR 739 (751)
T ss_pred CCCCCchhhhhhhcccceEEEEEEecCcc-------cccccc-ccccchhhccccccc
Confidence 99999999999999999999999999994 126676 888888887665444
No 2
>PF02516 STT3: Oligosaccharyl transferase STT3 subunit; InterPro: IPR003674 N-linked glycosylation is a ubiquitous protein modification, and is essential for viability in eukaryotic cells. A lipid-linked core-oligosaccharide is assembled at the membrane of the endoplasmic reticulum and transferred to selected asparagine residues of nascent polypeptide chains by the oligosaccharyl transferase (OTase) complex []. This family consists of the oligsacharyl transferase STT3 subunit and related proteins. The STT3 subunit is part of the oligosccharyl transferase (OTase) complex of proteins and is required for its activity [].; GO: 0004576 oligosaccharyl transferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 3AAG_B 2ZAI_D 2ZAG_A 3RCE_A.
Probab=100.00 E-value=5.1e-73 Score=639.24 Aligned_cols=473 Identities=32% Similarity=0.524 Sum_probs=327.7
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccccccccchhHHHHHHHHHHhcCccccccccCCCCcccCceecCccccchHHHHHH
Q 003973 20 LSFFILLLIGVLAFSIRLFSVIKYESVIHEFDPYFNYRVTQFLTKNGIYDFWNWFDDRTWYPLGRVIGGTVYPGLTLTAG 99 (782)
Q Consensus 20 l~~~iL~li~~~af~iRl~sv~~y~~iIhEFDPwfNyR~T~yl~~~G~~~f~nWFD~~sWYPlGR~vg~T~YPgLm~ta~ 99 (782)
+.++++++++.++++.|+|++.+++.++||+|||||||.+||+++||+++..+|||+++|||+||++. -.|++...++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dpyy~~r~~~~~~~~G~~~~~~~fd~~~~yP~G~~i~--~~pl~~~l~~ 79 (483)
T PF02516_consen 2 IFVVIFALIFRLAFYYRVFSVFDGGPYLNEFDPYYHYRLIEYIVNNGIFPFYNWFDPFTWYPWGRPID--WPPLFPYLTA 79 (483)
T ss_dssp --------HHHHHHHHHHHHHTHHHHHHSS-GGGEETTEE--S-HHHHHHHHHHHHHHS---TTS-----TT-HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhceeeeeeceeeeeCCCHHHHHHHHHHHHHcCCCcccCcCCccccCCCCCccC--cccHHHHHHH
Confidence 45678889999999999999999999999999999999999999999778899999999999999993 2244445567
Q ss_pred HHHHHHhhcCCCcccceeeeehhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhhhhhhhccccccchhHHHHHHHH
Q 003973 100 TIWWLLNSLNIPLSVETVCVFTAPIFSAFASWATYLLTKEVKGAGAGLTAAALLAMVPSYISRSVAGSYDNEAVAIFALI 179 (782)
Q Consensus 100 ~i~~ll~~lg~~v~i~~vcv~lppvfs~lt~i~~yll~~e~~~~~aGLlAA~~iAI~PgyisRSvaG~yDnE~iaif~ll 179 (782)
.++.++..++. +++.++|+++||++++|+++++|+++||++|+.+|++||+++|++|||++||++|+||||++++++++
T Consensus 80 ~~~~~~~~~~~-~~l~~v~~~~ppvl~~L~vi~~y~~~~~~~~~~~Gl~aA~l~a~~p~~l~RT~~G~~D~~~~~~~f~~ 158 (483)
T PF02516_consen 80 AFYAILGGFGP-VSLYEVAFWLPPVLGALTVIPVYLLGRRLGGRKAGLLAAFLLAISPGYLSRTMAGFYDHHMLELFFPL 158 (483)
T ss_dssp HHHHS-SS-HH-----HHHHHHHHHHGGGGHHHHHHHHHHTT-HHHHHHHHHHHTTSHHHHHTSSTT--SGGGGTTHHHH
T ss_pred HHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHhcCCCcccchHHHHHHH
Confidence 77887776543 79999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCC--hHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHccCccchhhHHhHHHHHHHHH--hh
Q 003973 180 ITFYLYIKTLNTGS--LFYATLNAIAYFYMVCSWGGY-TFIINLIPMHVLLCIVTGRYSSRLYIAYAPLVVLGTLL--AA 254 (782)
Q Consensus 180 ltfylwikalktgs--~~~a~lagl~y~ymv~aWGGy-vFi~nlI~l~~~vl~l~gr~s~rlyvays~~yvlgtll--~~ 254 (782)
++++++++|+|+++ +.|++++|+++++++++|+|| +|+.++++++++.+++.+|++++....++...++++++ .+
T Consensus 159 l~~~~~~~a~~~~~~~~~~~~laGl~~~l~~~~W~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i 238 (483)
T PF02516_consen 159 LIIYFFLLALKSAKRPLIYAVLAGLALGLYALAWGGYQVFLLIFILLFVIYQLIFDRFSPKILILVGFSVLLATLLGGII 238 (483)
T ss_dssp HHHHHHHHHHHH------THHHHHHHHHHHHHHHS-GGHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHS---HHHHHHHH
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987 999999999999999999999 99999999999999999999998888777677777766 77
Q ss_pred hccccceeeccchHHHHHHHHHHHHHHHHHHHHHHh--hcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCc
Q 003973 255 LVPVVGFNAVMTSEHFASFLVFIILHVVALVYYIKG--ILSPKMFKVAVTLVVSVGLVVCCAVIAILVALVASSPTKGWS 332 (782)
Q Consensus 255 ~iP~vGf~p~~s~e~~~al~vf~ll~~~~~~~~l~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~p~s 332 (782)
+++++|+++.++++++...++++++....+...... ....+.+....++..+.. +..+....+..+...|.+.+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~ 316 (483)
T PF02516_consen 239 ALLFIGFYSFRSSSILGAFLVFGLALLLLLGGFLALILWLKSYSFISLFYPGILFA--VLGLIGLVLFFLGFLGLIAPFL 316 (483)
T ss_dssp HHHHHHHHHST-HHHHHHHHHHHHHHHHHH----------------------------TTTTBG----HHHHHHHHHSSH
T ss_pred HHHHHhhcceecHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999888888988898888887777666544 223333444333331111 0111112223344556677889
Q ss_pred hhhhhccCcccccccCCccccccccCCCChhhHHHhhHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHH-H
Q 003973 333 GRSLSLLDPTYASKYIPIIASVSEHQPPTWPSYFMDINVLAFLVPAGIIACFLPLSDASSFVVLYIVTSVYFSGVMVR-L 411 (782)
Q Consensus 333 gR~~sl~~p~yak~~~PivaSVsEHqPt~w~sff~dl~~l~~~~p~Gl~~~~~~~~d~~~Flily~v~a~Yfa~~mvR-L 411 (782)
||++.++++.+.+.+.|.+.+++|||+++|.+++.+.++.++..|+|++++....+....+...+.+...++..+++| +
T Consensus 317 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rf~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (483)
T PF02516_consen 317 GILYSLFGLEYAKSKRPILIFLLEWQPFGLYAYFFGFRFAIFAVPVGIIFLGLFLDYLFLFFRKISIIQIYFLQVIVLVL 396 (483)
T ss_dssp HHHHHHHHHHHHHTT-SSGGGGHHHHHHHHHHHHH-GGGGGGGHHHHHHHHHHHHHHHHHSS------HHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888999999999999999999999999999988889999665444444455555666888999999999 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCcCCCCCCCCCCCCccccccccchhhhhccccccchhhHHH
Q 003973 412 MLVFAPAACIMSGIALSQAFDVFTRSIKFQLLRILGFSEADAGDGSSANVVPENDAVKVDKSEETIKERPSRKNKKKEKE 491 (782)
Q Consensus 412 ~l~laP~v~ilagi~is~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 491 (782)
+++++|+++..+++......+.. .++..+
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------~~~~~~ 425 (483)
T PF02516_consen 397 ALLLAPAVAIIAAYAISPIISRD---------------------------------------------------WDEALK 425 (483)
T ss_dssp HHHHHHHHHHHHH-----SSTCC---------------------------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHHHhhccchhhh---------------------------------------------------hhhhhH
Confidence 88888888887776544221110 000000
Q ss_pred HHHHHHHhhhhccchhhhhhhcccchhHHHHHHHHHHHHHHhHhhhHhhhhhcccCCcEEEEeccCCCcccchhHHHHHH
Q 003973 492 QMEKAQAEKTSAKSKTEKRLLVLPMELSVIGLLLLVFMGAFYVVHCVWAAAEAYSAPSIVLTSYTHEGLHVFDDFREAYA 571 (782)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~l~~~~~h~~~~~~~aySsPsivl~s~~~~G~~i~DD~reAy~ 571 (782)
.. . . ++ + + + .+..+|||+||++
T Consensus 426 ---------------------~~-----------------~-~--~~----~-----~----~----~~~~~~~w~~al~ 447 (483)
T PF02516_consen 426 ---------------------WL-----------------K-A--SI----N-----T----S----PPIMNDDWYDALE 447 (483)
T ss_dssp ---------------------HH-----------------H-T---E----E-----E----E----T---SSSSSB--C
T ss_pred ---------------------hh-----------------h-h--hc----c-----c----c----ccccccccccccc
Confidence 00 0 0 00 0 0 0 1455899999999
Q ss_pred HHhhcCCCCCeeeeeccccceeeecccccccccCC
Q 003973 572 WLRHNTEVDDKVASWWDYGYQTTAMANRTVIVDNN 606 (782)
Q Consensus 572 WLr~NTp~da~VmSWWDYGYqIt~manRttlvDNN 606 (782)
|||+|||+|++|||||||||||+.+|||+|++||.
T Consensus 448 ~l~~~t~~~~~V~SWWDYGy~I~~~a~R~~~~DGg 482 (483)
T PF02516_consen 448 WLKENTPPDYVVMSWWDYGYWITYIAERPVVADGG 482 (483)
T ss_dssp HHH-CSGTT-EEEGGGCCHHHHCCCCGGEESHCTT
T ss_pred cccCCCCccceeeHHHHHhHHHHHhccceEEeCCc
Confidence 99999999999999999999999999999999985
No 3
>COG1287 Uncharacterized membrane protein, required for N-linked glycosylation [General function prediction only]
Probab=100.00 E-value=2.9e-67 Score=624.83 Aligned_cols=673 Identities=23% Similarity=0.278 Sum_probs=493.6
Q ss_pred HHHHHHHHHHHHHHhhcc--cccccc--cccccchhHHHHHHHHHHhcCccccccccCCCCcccCceecC-ccccchHHH
Q 003973 22 FFILLLIGVLAFSIRLFS--VIKYES--VIHEFDPYFNYRVTQFLTKNGIYDFWNWFDDRTWYPLGRVIG-GTVYPGLTL 96 (782)
Q Consensus 22 ~~iL~li~~~af~iRl~s--v~~y~~--iIhEFDPwfNyR~T~yl~~~G~~~f~nWFD~~sWYPlGR~vg-~T~YPgLm~ 96 (782)
..+++.++.++|.+|.++ ....+. +++|+|||||||.+|++++||.. ++|+|+...||+|.+++ ++++|.++.
T Consensus 19 ~~v~i~i~~~~f~v~~~~~~~~~~~~g~y~~e~Dpyy~~r~~~~~l~~g~~--~~~~~~~~~YP~G~~i~~~pl~~~l~~ 96 (773)
T COG1287 19 LLVLIPILVLGFLVRAFTRSYAFDDPGVYFGEFDPYYHYRLIENLLKNGPP--RDFFDPYDNYPPGSPIDFPPLFLYLTA 96 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCcHHHHHHHHHHHHhCCC--ccCCChhhcCCCCCCCCCCchHHHHHH
Confidence 344444555555555544 445555 99999999999999999999932 44555556699999996 666666665
Q ss_pred HHHHHHHHHhhcCCCcccceeeeehhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhhhhhhhccccccchhHHHHH
Q 003973 97 TAGTIWWLLNSLNIPLSVETVCVFTAPIFSAFASWATYLLTKEVKGAGAGLTAAALLAMVPSYISRSVAGSYDNEAVAIF 176 (782)
Q Consensus 97 ta~~i~~ll~~lg~~v~i~~vcv~lppvfs~lt~i~~yll~~e~~~~~aGLlAA~~iAI~PgyisRSvaG~yDnE~iaif 176 (782)
+.+.+...+ .+++++++|.++||++|+||++++|+++||+.|+.+|++||++++++|+|++||++|++|||+.+++
T Consensus 97 ~~~~~~~~~----~~~~~~~~~~~~PailG~L~vI~vYl~~r~i~~~~~g~~aa~ll~~~p~~~~rt~~G~~d~~~~~~~ 172 (773)
T COG1287 97 ALGLILGSI----FPVSLETAALLFPAILGVLTVIPVYLLGRRILGDKTGLLAALLLALAPGYLSRTVAGFYDTDMFELL 172 (773)
T ss_pred HHHHHHHcc----CchHHHHHHHHhhHHHhhHHHHHHHHHHHHHhcchhhHHHHHHHHHhhHHHHHhhcCccCCCchHHH
Confidence 555444433 3479999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh-----cCChHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH-ccCccchhhHHhHHHHHHH
Q 003973 177 ALIITFYLYIKTLN-----TGSLFYATLNAIAYFYMVCSWGGYTFIINLIPMHVLLCIVT-GRYSSRLYIAYAPLVVLGT 250 (782)
Q Consensus 177 ~llltfylwikalk-----tgs~~~a~lagl~y~ymv~aWGGyvFi~nlI~l~~~vl~l~-gr~s~rlyvays~~yvlgt 250 (782)
+.++++++++++++ .++++|++++|+++++|+++|+||.++++++.++++++.+. .+..++.+..+++..+..+
T Consensus 173 ~~~~~l~~~~~aL~~~~~~~~~~~~~~lag~~~~l~~~sW~g~~~~~~i~l~~~~~~~v~~~~~~~~~~~~~~~~~v~~~ 252 (773)
T COG1287 173 LPLFALFFFLLALKAAKKLKKPVIYALLAGLALGLLALAWGGYYYILAILLLYALVLLVLAFLRGKKTDILGFVGLVTLT 252 (773)
T ss_pred HHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHcCCccchhhhhhhHHHH
Confidence 99999999999998 48899999999999999999999998888888888887774 5555667777778888888
Q ss_pred HHhhhc--cccceeeccchHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 003973 251 LLAALV--PVVGFNAVMTSEHFASFLVFIILHVVALVYYIKGILSPKMFKVAVTLVVSVGLVVCCAVIAILVALVASSPT 328 (782)
Q Consensus 251 ll~~~i--P~vGf~p~~s~e~~~al~vf~ll~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i 328 (782)
+.++++ |..|+.+...+.++-..+...+.++.+...+++....++.+.......+..+ ++++.+...+.....++
T Consensus 253 ~~~~l~~~~~~g~~~~~~~gf~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~l~~~~~~~~~~~~~~ 329 (773)
T COG1287 253 LLSLLILPPLLGFSGYYYSGFSVLLGFIVLAVLGLLFSLVKNFELRKFFAYLVPLTLSLA---LILGGLLLFLELLRAYI 329 (773)
T ss_pred HHHHHhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccceEeeeeeehH---HHHHHHHHHHhccceEE
Confidence 888877 7889988888766555433344444444445554444333333333222221 33334444445566788
Q ss_pred CCCchhhhhccCcccccc-cCCccccccccCCCChhhHHHhhHHHHHHH--HHHHHHHhcCCCCchHHHHHHHHHHHHHH
Q 003973 329 KGWSGRSLSLLDPTYASK-YIPIIASVSEHQPPTWPSYFMDINVLAFLV--PAGIIACFLPLSDASSFVVLYIVTSVYFS 405 (782)
Q Consensus 329 ~p~sgR~~sl~~p~yak~-~~PivaSVsEHqPt~w~sff~dl~~l~~~~--p~Gl~~~~~~~~d~~~Flily~v~a~Yfa 405 (782)
.|+++|.+...+..|+.. +++.+.++.++++.++...|...++...+. +...+.+.++.+++++|+++|.+++.|++
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~v~s~y~~ 409 (773)
T COG1287 330 LPISGRLYVGGLQVYLPFGTIAEAAPIFLPLGITNAALFGAAGFFALLLGILLLAYFLVRRPKKEGLFLLVWLVLSFYAA 409 (773)
T ss_pred EeeccceeEeeeeeeeecchhhhhhhheeeccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHH
Confidence 899999999999988776 788999999999966666666666666655 56677788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCcCCCCCCCCCCCCccccccccchhhhhccccccc
Q 003973 406 GVMVRLMLVFAPAACIMSGIALSQAFDVFTRSIKFQLLRILGFSEADAGDGSSANVVPENDAVKVDKSEETIKERPSRKN 485 (782)
Q Consensus 406 ~~mvRL~l~laP~v~ilagi~is~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (782)
..|+||..+++|++|+++|++++.++|.+... +.++. .. .... ...
T Consensus 410 ~~~~Rf~~~~a~~vai~~g~~l~~~~e~l~~~----~~~~~---~~------------------------~~~~---~~~ 455 (773)
T COG1287 410 LTQVRFAFYLAPAVAILAGIGLGQLLEILKLG----RVEKA---NG------------------------SAIS---LVA 455 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhcc---cc------------------------ccee---EEE
Confidence 99999999999999999999999999984321 11100 00 0000 000
Q ss_pred hhhHHHHHHHHHHhhhhccchhhhhhhcccchhHHHHHHHHHHHHHHhHhhhHhhhhhcccCCcEEEEeccCCC-cccch
Q 003973 486 KKKEKEQMEKAQAEKTSAKSKTEKRLLVLPMELSVIGLLLLVFMGAFYVVHCVWAAAEAYSAPSIVLTSYTHEG-LHVFD 564 (782)
Q Consensus 486 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~l~~~~~h~~~~~~~aySsPsivl~s~~~~G-~~i~D 564 (782)
+.+.-.+ ..... +...............+.......+-.+++..+...+.....+..+|+ +...|
T Consensus 456 ~~~~~~~----------~~~~~----~~~~~~~~~~~~~~~a~p~~~~~~~~~~~~~~~w~d~~~wi~~~~~~~~~~~~~ 521 (773)
T COG1287 456 SLADVAG----------FALSV----KVLSAVPVLIVLASLALPWLRNSTNPSDVTGAAWWDAGYWIRSSTPDNSLDYAD 521 (773)
T ss_pred Eeccccc----------cceee----eeeehhHHHHHHHHHHhHHHHhccccccccccccccccceEEeecCCCCccccc
Confidence 0000000 00000 011110111111111122223333333433333444444455556666 67888
Q ss_pred hHHHHHHHHhhcCCCC--CeeeeeccccceeeecccccccccCCCCcchhHhHHhhhhCCCHHHHHHHHhhc----CCCE
Q 003973 565 DFREAYAWLRHNTEVD--DKVASWWDYGYQTTAMANRTVIVDNNTWNNTHIATVGTAMSSPEKAAWEIFNSL----DVKY 638 (782)
Q Consensus 565 D~reAy~WLr~NTp~d--a~VmSWWDYGYqIt~manRttlvDNNTwN~thIa~vGk~laS~E~~A~~Ilr~l----dvdY 638 (782)
++.+...|.+-|.|++ ..|+||||||+||..+++|.+.+|+..+|.+|++.....+.+ |++++++++++ +++|
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~v~swwd~g~~i~~~~~~~~~~~~f~a~~~~~~~~~y~~~~-~~~a~~il~~~~~~~~~~y 600 (773)
T COG1287 522 GYESPLAWEWFASPSLAIYAVNSWWDYGHWIVYVGDRIPVANPFQAGILLIAQKFYTASS-EEEALPILSKTDPSPDVRY 600 (773)
T ss_pred ccCCccccchhhcccccccceeeeecCCeeEEEEEeecccccCccccCcccccccccCCc-hhhhhhhHHhhCCCCCCcE
Confidence 8888887655555554 799999999999999999999999999999996555556655 99999999999 6999
Q ss_pred EEEEeCCccCCCCCchhhHHHHHHhcCCCCC-CCCCCC-------ccc-CCccccCCCCCHhHHHHHhhhhh----hccc
Q 003973 639 VLVVFGGLVGYPSDDINKFLWMVRIGGGVFP-HIKEPD-------YLR-DGQYRIDSQATPTMLNCLMYKLS----YYRF 705 (782)
Q Consensus 639 VLVifGg~~gysgdDinKflWMvRIa~~~~p-~i~e~d-------y~~-~g~y~vd~~~s~~m~~sLmYkl~----yy~f 705 (782)
|++...+..|+..+|.++|+||.|+..+..+ ++++.+ .+. ++++++++.....+++.-+++.+ |..-
T Consensus 601 v~~~~~~~~~~~~~~~~~f~~~~~~~~~y~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~~~ 680 (773)
T COG1287 601 VVLDIPRTIGKFYSDGAKFPWIPRSEDGYSTGEYKGGLNSNDNSELYLNSGEVRLDEFDGFNLSHLRLVIESYKPVYEGG 680 (773)
T ss_pred EEEeccccccccccccceeccccccccccceeEeeccccccchhhhhcccceeEEeccccccchhhheeeeccceeeccC
Confidence 9999999889888999999999999766555 444432 344 88899998888888888888887 2111
Q ss_pred c-c---CCCcccccccceeccccC---CCCCcceeeeeccCcEEEEEEecCCCc
Q 003973 706 V-E---TDGKGFDRVRRTEIGKKY---FKLTHFEEVFTTHHWMVRIYKLKPSKN 752 (782)
Q Consensus 706 ~-~---~~~~g~D~~r~~~i~~~~---~~l~~~ee~ftS~~w~VRiykvk~~~~ 752 (782)
+ + +..+.+|+++++++++.+ .+.+...|..++++|.+||++.++.+.
T Consensus 681 ~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~ 734 (773)
T COG1287 681 GKVSAFGLVKIFEYVHGQIYTGTVARNYTVKITTTLVTSTGTTVGYTPGTYDDA 734 (773)
T ss_pred CceeecceEEEEEeeccccccCcccccccceEEEEEEecccceEeecccccccc
Confidence 1 1 345679999999987776 457888999999999999999988775
No 4
>TIGR03663 conserved hypothetical protein TIGR03663. Members of this protein family, uncommon and rather sporadically distributed, are found almost always in the same genomes as members of family TIGR03662, and frequently as a nearby gene. Members show some N-terminal sequence similarity with Pfam family pfam02366, dolichyl-phosphate-mannose-protein mannosyltransferase. The few invariant residues in this family, found toward the N-terminus, include a dipeptide DE, a tripeptide HGP, and two different Arg residues. Up to three members may be found in a genome. The function is unknown.
Probab=99.31 E-value=3.3e-09 Score=120.54 Aligned_cols=167 Identities=23% Similarity=0.252 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHhhcccccccccccccchhHHHHHHHHHHhcCccccccccCCCCcccCceecCccccchHHHHHHHHHH
Q 003973 24 ILLLIGVLAFSIRLFSVIKYESVIHEFDPYFNYRVTQFLTKNGIYDFWNWFDDRTWYPLGRVIGGTVYPGLTLTAGTIWW 103 (782)
Q Consensus 24 iL~li~~~af~iRl~sv~~y~~iIhEFDPwfNyR~T~yl~~~G~~~f~nWFD~~sWYPlGR~vg~T~YPgLm~ta~~i~~ 103 (782)
.++++.++|+.+|+..- ....+ ++|==.+-..++.+.++|-+ + ||+. +.| |.+.+..+..+.
T Consensus 3 ~~~~i~l~al~lRl~~L--g~~~~-~~DEa~ya~~a~~ml~~g~~---~-~~p~-~h~----------Pll~wl~A~~~~ 64 (439)
T TIGR03663 3 LVILIVLFALLLRLFEL--GLRVF-HHDEAIHASFILKLLETGVY---S-YDPA-YHG----------PFLYHITAAVFH 64 (439)
T ss_pred HHHHHHHHHHHHHHHhc--CCCCC-CCCchhHHHHHHHHHhcCCC---C-cCCC-CCC----------CHHHHHHHHHHH
Confidence 35667788999999873 23344 57766666677778888842 1 2443 222 555566666666
Q ss_pred HHhhcCCCcccceeeeehhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhhhhhhhccccccchhHHHHHHHHHHHH
Q 003973 104 LLNSLNIPLSVETVCVFTAPIFSAFASWATYLLTKEVKGAGAGLTAAALLAMVPSYISRSVAGSYDNEAVAIFALIITFY 183 (782)
Q Consensus 104 ll~~lg~~v~i~~vcv~lppvfs~lt~i~~yll~~e~~~~~aGLlAA~~iAI~PgyisRSvaG~yDnE~iaif~llltfy 183 (782)
+ +|. .|+.+=+||.+.++.++.+|++.|+..|+.+|++||+++++.|..+..|-. .-+|+.-.++++++++
T Consensus 65 l---FG~----se~a~RL~~aL~g~~v~l~~~~~r~~~~~~~al~AAllla~sp~~~~~sr~--~~~D~~l~~f~~lal~ 135 (439)
T TIGR03663 65 L---FGI----SDATARLLPAVFGVLLPLTAWLYRKRLGDNEVLWAAVLLAFSPVMVYYSRF--MRNDIFVAFFTLLAVG 135 (439)
T ss_pred H---hCC----CHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHhHHHHHHHHH--HhHHHHHHHHHHHHHH
Confidence 5 453 467777888777777788888888888888999999999999998666654 4467999999999999
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhccchhHH
Q 003973 184 LYIKTLNTGSLFYATLNAIAYFYMVCSWGGYTFI 217 (782)
Q Consensus 184 lwikalktgs~~~a~lagl~y~ymv~aWGGyvFi 217 (782)
+++|++++++..|..++|++.+.++.+.|-..++
T Consensus 136 ~l~r~~~~~~~~~~~lag~~~gLa~ltKg~~~l~ 169 (439)
T TIGR03663 136 AAFRYLDTGKRRYLFLAASALALAFTSKENAYLI 169 (439)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998754433
No 5
>PF10034 Dpy19: Q-cell neuroblast polarisation; InterPro: IPR018732 This entry represents the Dpy-19 protein from Caenorhabditis elegans and its homologues in other Metazoa, including mammals. In C. elegans, Dpy-19 is required to orient neuroblasts QL and QR correctly on the anterior/posterior (A/P) axis. These neuroblasts are born in the same A/P position, but polarise and migrate left/right asymmetrically, where QL migrates toward the posterior and QR migrates toward the anterior. After their migrations, QL (but not QR) switches on the Hox gene mab-5. Dpy-19 is required along with Unc-40 to express Mab-5 correctly in the Q cell descendants []. A mammalian dpy-19 homologue was found to be expressed in GABAergic neurons []. The mammalian homologue of Mab-5 is the Gsh2 homeobox transcription factor, which plays a crucial role in the development of GABAergic neurons. ; GO: 0016021 integral to membrane
Probab=98.73 E-value=4.3e-05 Score=90.71 Aligned_cols=369 Identities=18% Similarity=0.237 Sum_probs=194.4
Q ss_pred ccccccchhHHHHHHH-----HHHhcCccc-----------cc-----cccCCCCcccCceec--CccccchHHHHHHHH
Q 003973 45 SVIHEFDPYFNYRVTQ-----FLTKNGIYD-----------FW-----NWFDDRTWYPLGRVI--GGTVYPGLTLTAGTI 101 (782)
Q Consensus 45 ~iIhEFDPwfNyR~T~-----yl~~~G~~~-----------f~-----nWFD~~sWYPlGR~v--g~T~YPgLm~ta~~i 101 (782)
+.+||.|=||--+... +=.|.|+|= |+ -=.|..+=||.=-.+ -=.+||=+. .+.+
T Consensus 13 ~~~~e~~~~fs~~~~~Ere~sfrte~glYYsyyk~~~~apsf~~g~~~l~~dn~te~p~~IN~l~RfnlypEvi--l~~~ 90 (642)
T PF10034_consen 13 STLHENDRWFSHLSELEREISFRTEMGLYYSYYKTIVEAPSFWEGLYELMNDNRTEYPRTINALQRFNLYPEVI--LAVL 90 (642)
T ss_pred HHHHhhhhhhhhhhHHHHHHHhhccCcchhHHHHhHhcCCcHHHHHHHHhcCCCccchhhhhHHHHhhhhHHHH--HHHH
Confidence 4679999999887762 456667551 11 123788888864433 225788775 3457
Q ss_pred HHHHhhcCCCccc-ceeeeehhhHH--HHHHHHHHHHHHHHhcC-chHHHHHHHHHHhhhhhhhhccccccchhHHHHHH
Q 003973 102 WWLLNSLNIPLSV-ETVCVFTAPIF--SAFASWATYLLTKEVKG-AGAGLTAAALLAMVPSYISRSVAGSYDNEAVAIFA 177 (782)
Q Consensus 102 ~~ll~~lg~~v~i-~~vcv~lppvf--s~lt~i~~yll~~e~~~-~~aGLlAA~~iAI~PgyisRSvaG~yDnE~iaif~ 177 (782)
|++.+...- .+ .-++.++-.+| .|+++.+.|+.+-.++| --+|+++++..-+-=+-..|=.-.-==-|..|.++
T Consensus 91 yr~~~~~~~--~~~~P~yFYi~~Vf~l~g~~v~~Lf~~~~~lSgS~l~Gll~v~~f~fNh~e~TRV~~tpPLREnfA~Pf 168 (642)
T PF10034_consen 91 YRIFPSIQN--FLGEPVYFYIYSVFGLQGLYVTALFLYGWYLSGSWLGGLLTVLWFFFNHGETTRVMWTPPLRENFALPF 168 (642)
T ss_pred HHHHHHhhh--ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHccccceeeeecCcchhhcccHH
Confidence 999884321 22 44566676666 57888888888888875 56999999888765555666544444478999999
Q ss_pred HHHHHHHHHHHhhc--CC--hHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHccCccc----hhhHHhHHHHHH
Q 003973 178 LIITFYLYIKTLNT--GS--LFYATLNAIAYFYMVCSWGGYTFIINLIPMHVLLCIVTGRYSSR----LYIAYAPLVVLG 249 (782)
Q Consensus 178 llltfylwikalkt--gs--~~~a~lagl~y~ymv~aWGGyvFi~nlI~l~~~vl~l~gr~s~r----lyvays~~yvlg 249 (782)
+.+-+++...-+|+ .. ...-++=.++.+.+...|-=-+|++-+=.+..+++-.+|=-..+ ++..+..-.+++
T Consensus 169 ~~lQ~~~lt~~Lr~~~~~~~~~~~~~l~~st~~f~l~WQFsqFilltQ~~sLf~l~~l~~i~~~k~~~i~~~~~~Sl~l~ 248 (642)
T PF10034_consen 169 FWLQMAALTYILRSNNRQSERKCLFALFVSTFFFMLTWQFSQFILLTQIASLFALYILGYIPSKKVKKIYKIHMFSLLLS 248 (642)
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Confidence 88888888888877 21 11112222333336667877777665544444445555444433 444444444444
Q ss_pred HHHhhhccccceeeccchHHHHHHHHHHHHHHHHHHHHHHhhcChh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 003973 250 TLLAALVPVVGFNAVMTSEHFASFLVFIILHVVALVYYIKGILSPK-MFKVAVTLVVSVGLVVCCAVIAILVALVASSPT 328 (782)
Q Consensus 250 tll~~~iP~vGf~p~~s~e~~~al~vf~ll~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i 328 (782)
-++.. |=.. -+.+.....++.+. ....++..+.++ ...+..+..+-.. ..+.+.+++-.++...+-
T Consensus 249 ~lLqF-----gN~m-----LL~S~~~S~ll~~~-~~~~~~~~v~~~~~~~~~~~~~i~~~--~~~~~Ti~Lk~lis~iL~ 315 (642)
T PF10034_consen 249 FLLQF-----GNSM-----LLTSYYLSSLLSLL-LIICLQQNVKKGLFVSRIIKWLIQSL--LWLCLTIILKFLISKILG 315 (642)
T ss_pred HHHHh-----CCHH-----HHHHHHHHHHHHHH-HHHHhhhhhhcccchhhHHHHHHHHH--HHHHHHHHHHHHHHHHcC
Confidence 33321 1111 12222222222222 122333332222 1212222111110 122233333222222210
Q ss_pred CCCchhhhhccCc-----ccccccCCccccccccCCCChhhHHHhhHHH--HHHHHHHHHHH-------hcCC-------
Q 003973 329 KGWSGRSLSLLDP-----TYASKYIPIIASVSEHQPPTWPSYFMDINVL--AFLVPAGIIAC-------FLPL------- 387 (782)
Q Consensus 329 ~p~sgR~~sl~~p-----~yak~~~PivaSVsEHqPt~w~sff~dl~~l--~~~~p~Gl~~~-------~~~~------- 387 (782)
.-=.+.+..++-. .++.-+--+..-=+|.++.+++.+.....-+ .+...+++..+ ++++
T Consensus 316 ~~DD~HI~~lLkaKfgL~~~~dFdT~LYtC~~eFdfl~~~tf~rltkTlLLP~yilvl~ii~~~~~~~~~~~l~~~~~~~ 395 (642)
T PF10034_consen 316 VKDDAHIFDLLKAKFGLTSYRDFDTMLYTCAPEFDFLSKDTFLRLTKTLLLPFYILVLVIILFSILQDIFRRLSRNSNKQ 395 (642)
T ss_pred ccccHHHHHHHHHHhcccCCCCchhHHHHHHHHhcccchHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 0001122222211 1111122355566889999988765532221 11112222211 1111
Q ss_pred -------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003973 388 -------------SDASSFVVLYIVTSVYFSGVMVRLMLVFAPAACIMSGIALSQA 430 (782)
Q Consensus 388 -------------~d~~~Flily~v~a~Yfa~~mvRL~l~laP~v~ilagi~is~l 430 (782)
+.+-+|.++=.+.-...|...-||=++.+|=+|++|+..-|.-
T Consensus 396 ~~~~~~~~~~~~~~~e~~Y~~lQ~i~F~~LA~~imRLK~l~tPhmCv~As~vcS~~ 451 (642)
T PF10034_consen 396 RKEKETEDGRIGERPELVYHVLQTIAFGLLALLIMRLKYLWTPHMCVMASLVCSPE 451 (642)
T ss_pred hhhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHH
Confidence 1134666666666666788889999999999999999965543
No 6
>TIGR03662 Chlor_Arch_YYY Chlor_Arch_YYY domain. Members of this highly hydrophobic probable integral membrane family belong to two classes. In one, a single copy of the region modeled by This model represents essentially the full length of a strongly hydrophobic protein of about 700 to 900 residues (variable because of long inserts in some). The domain architecture of the other class consists of an additional N-terminal region, two copies of the region represented by this model, and three to four repeats of TPR, or tetratricopeptide repeat. The unusual species range includes several Archaea, several Chloroflexi, and Clostridium phytofermentans. An unusual motif YYYxG is present, and we suggest the name Chlor_Arch_YYY protein. The function is unknown.
Probab=98.17 E-value=0.011 Score=71.69 Aligned_cols=79 Identities=19% Similarity=0.274 Sum_probs=61.0
Q ss_pred hhHHHHHHHHhhcCCCCCeeeee----ccccceeeecccccccccCC---------C---CcchhHhHHhhhhC-CCHHH
Q 003973 564 DDFREAYAWLRHNTEVDDKVASW----WDYGYQTTAMANRTVIVDNN---------T---WNNTHIATVGTAMS-SPEKA 626 (782)
Q Consensus 564 DD~reAy~WLr~NTp~da~VmSW----WDYGYqIt~manRttlvDNN---------T---wN~thIa~vGk~la-S~E~~ 626 (782)
.+=.||.+|||+|||.|++|+.= ..|+--++.++.|+|+.--. . ..++-...+-.+-+ .|+++
T Consensus 593 ~~d~~Ai~WLr~n~~g~~ViLeA~g~~Y~~~~rvSa~TGlpTVlGW~~He~~wR~~~~~~~~~~R~~dV~~IY~s~d~~~ 672 (723)
T TIGR03662 593 PEDAAAIRWLRQNIDGTPVILEAAGDSYTYASRVSAATGLPTVIGWAGHEWQWRGGVDETEVGERVDDVETIYTSGDPTE 672 (723)
T ss_pred cchHHHHHHHHhcCCCCCEEEecCCccccCCccchhhcCCcceecChhHHhHhcCCCChhhHHHHHHHHHHHHcCCCHHH
Confidence 34578999999999999998862 56777788899999966422 1 23444556766756 58999
Q ss_pred HHHHHhhcCCCEEEEE
Q 003973 627 AWEIFNSLDVKYVLVV 642 (782)
Q Consensus 627 A~~Ilr~ldvdYVLVi 642 (782)
+.+++++.|+|||.|=
T Consensus 673 ~~~Ll~kY~V~YVyVG 688 (723)
T TIGR03662 673 ARELLERYGVDYVYVG 688 (723)
T ss_pred HHHHHHHcCCeEEEEC
Confidence 9999999999999873
No 7
>PRK13279 arnT 4-amino-4-deoxy-L-arabinose transferase; Provisional
Probab=98.04 E-value=0.0041 Score=73.26 Aligned_cols=145 Identities=15% Similarity=0.115 Sum_probs=96.1
Q ss_pred ccchhHHHHHHHHHHhcCccccccccCCCCcccCceecCccccchHH-HHHHHHHHHHhhcCCCcccceeeeehhhHHHH
Q 003973 49 EFDPYFNYRVTQFLTKNGIYDFWNWFDDRTWYPLGRVIGGTVYPGLT-LTAGTIWWLLNSLNIPLSVETVCVFTAPIFSA 127 (782)
Q Consensus 49 EFDPwfNyR~T~yl~~~G~~~f~nWFD~~sWYPlGR~vg~T~YPgLm-~ta~~i~~ll~~lg~~v~i~~vcv~lppvfs~ 127 (782)
..|==.+...++-|.++| ||..++.+ |.+- -.-|++. +..+..+++ +| ..+.++=+|+++++
T Consensus 30 ~~DE~ryA~iareMl~sG-----dWlvP~~~---g~~y--~eKPPL~yWl~Als~~L---FG----~~~~a~RLpsaL~~ 92 (552)
T PRK13279 30 QPDETRYAEISREMLASG-----DWIVPHFL---GLRY--FEKPIAGYWINSIGQWL---FG----DNNFGVRFGSVFST 92 (552)
T ss_pred CCchHHHHHHHHHHHHhC-----CcCccccC---CCcC--CCCCcHHHHHHHHHHHH---cC----CCcHHHHHHHHHHH
Confidence 344456677889999998 78766553 3332 2578886 455555555 34 35678888887765
Q ss_pred -HHHHHHHHHHHHhc-CchHHHHHHHHHHhhhhhhhhccccccchhHHHHHHHHHHHHHHHHHhh----cCChHHHHHHH
Q 003973 128 -FASWATYLLTKEVK-GAGAGLTAAALLAMVPSYISRSVAGSYDNEAVAIFALIITFYLYIKTLN----TGSLFYATLNA 201 (782)
Q Consensus 128 -lt~i~~yll~~e~~-~~~aGLlAA~~iAI~PgyisRSvaG~yDnE~iaif~llltfylwikalk----tgs~~~a~lag 201 (782)
++++.+|.++|+++ ++.+|++|+++....|.....+.....| +.-.++++++++++..+++ +++..+.++.|
T Consensus 93 ~lt~llvy~larrl~~~r~~AllAaLIlls~~~v~~~g~~a~~D--~~l~~fi~lal~~f~~~~~~~~~~~~~~~~lllG 170 (552)
T PRK13279 93 LLSALLVYWLALRLWRDRRTALLAALIYLSLFLVYGIGTYAVLD--PMITLWLTAAMCSFWLALQAQTRRGKIGGYLLLG 170 (552)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHcccccchHHHHHHHH
Confidence 68999999999996 6789999999999999987766555555 3334444444433333333 23455556677
Q ss_pred HHHHHHHHhcc
Q 003973 202 IAYFYMVCSWG 212 (782)
Q Consensus 202 l~y~ymv~aWG 212 (782)
++.+..+.+=|
T Consensus 171 la~Glg~LTKG 181 (552)
T PRK13279 171 LACGMGFMTKG 181 (552)
T ss_pred HHHHHHHHhcc
Confidence 77776665543
No 8
>PF02366 PMT: Dolichyl-phosphate-mannose-protein mannosyltransferase ; InterPro: IPR003342 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Dolichyl-phosphate-mannose-protein mannosyltransferase proteins 2.4.1.109 from EC belong to the glycosyltransferase family 39 (GT39 from CAZY) and are responsible for O-linked glycosylation of proteins. They catalyse the reaction: Dolichyl phosphate D-mannose + protein -> dolichyl phosphate + O-D-mannosyl-protein. The transfer of mannose to seryl and threonyl residues of secretory proteins is catalyzed by a family of protein mannosyltransferases in Saccharomyces cerevisiae coded for by seven genes (PMT1-7). Protein O-glycosylation is essential for cell wall rigidity and cell integrity and this protein modification is vital for S. cerevisiae [].; GO: 0000030 mannosyltransferase activity, 0006493 protein O-linked glycosylation, 0016020 membrane
Probab=98.01 E-value=0.00022 Score=74.63 Aligned_cols=97 Identities=23% Similarity=0.343 Sum_probs=81.1
Q ss_pred ehhhHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHhhhhhhhhccccccchhHHHHHHHHHHHHHHHHHh-----hcCC
Q 003973 120 FTAPIFSAFASWATYLLTKEVKG-AGAGLTAAALLAMVPSYISRSVAGSYDNEAVAIFALIITFYLYIKTL-----NTGS 193 (782)
Q Consensus 120 ~lppvfs~lt~i~~yll~~e~~~-~~aGLlAA~~iAI~PgyisRSvaG~yDnE~iaif~llltfylwikal-----ktgs 193 (782)
+.+.++++++++.+|+++|++.+ +.+|++||++++..|.++.=|.. .-+|++..++++++++++.+.. ++++
T Consensus 87 ~~~~l~~~~~~~l~y~~~~~~~~s~~~al~aa~l~~~~~~~~~~sr~--~~~D~~l~~f~~la~~~~~~~~~~~~~~~~~ 164 (245)
T PF02366_consen 87 LPSALFGALTVPLVYLILRRLFGSRRAALLAALLLALDPSLIVQSRY--ALLDSILLFFILLAIYCLLRWYRYQPFRRKW 164 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 45568888999999999999964 89999999999999999543332 4678999999999999999995 4466
Q ss_pred hHHHHHHHHHHHHHHHh-ccchhHHH
Q 003973 194 LFYATLNAIAYFYMVCS-WGGYTFII 218 (782)
Q Consensus 194 ~~~a~lagl~y~ymv~a-WGGyvFi~ 218 (782)
+.+.+++|++.+.-+++ |-|...+.
T Consensus 165 ~~~~~l~gi~lGla~~~K~~~~~~~~ 190 (245)
T PF02366_consen 165 WLWLLLAGIALGLAILTKGPGLLLVL 190 (245)
T ss_pred HHHHHHHHHHHHHHHHhchhHHHHHH
Confidence 88999999999999988 88775443
No 9
>PF13231 PMT_2: Dolichyl-phosphate-mannose-protein mannosyltransferase
Probab=97.85 E-value=0.00045 Score=66.13 Aligned_cols=110 Identities=21% Similarity=0.293 Sum_probs=85.5
Q ss_pred chHH-HHHHHHHHHHhhcCCCcccceeeeehhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhhhhhhhccccccch
Q 003973 92 PGLT-LTAGTIWWLLNSLNIPLSVETVCVFTAPIFSAFASWATYLLTKEVKGAGAGLTAAALLAMVPSYISRSVAGSYDN 170 (782)
Q Consensus 92 PgLm-~ta~~i~~ll~~lg~~v~i~~vcv~lppvfs~lt~i~~yll~~e~~~~~aGLlAA~~iAI~PgyisRSvaG~yDn 170 (782)
|++. +..+.++++. |.+ .....+...+++.++.+..|.+.|++.++..+++++++.+..|..+.=+. ..-+
T Consensus 3 pPl~~~~~~~~~~l~---G~~---~~~~~~~~~l~~~~~~~~~y~i~r~~~~~~~a~~~~l~~~~~p~~~~~~~--~~~~ 74 (159)
T PF13231_consen 3 PPLYFLLLALFFKLF---GDS---VWALRLFNILFSLLTLLLIYLIARRLFGRRAALIAALLLALSPMFIFYSA--SARP 74 (159)
T ss_pred ChHHHHHHHHHHHHh---CcC---HHHHHHHHHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHhHHHHHHHH--HHhH
Confidence 4443 5555666654 321 12233556688889999999999999889999999999999999877666 6677
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Q 003973 171 EAVAIFALIITFYLYIKTLNTGSLFYATLNAIAYFYMVC 209 (782)
Q Consensus 171 E~iaif~llltfylwikalktgs~~~a~lagl~y~ymv~ 209 (782)
|....++.++++|++.|..|+++..+.+++|++.+....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 113 (159)
T PF13231_consen 75 DMLLLFFFLLALYAFYRYIKSKKWRWWILAGLLLGLAFL 113 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 999999999999999999999987677777776655443
No 10
>TIGR03766 conserved hypothetical integral membrane protein. Models TIGR03110, TIGR03111, and TIGR03112 describe a three-gene system found in several Gram-positive bacteria, where TIGR03110 is distantly related to a putative transpeptidase, exosortase (TIGR02602). This model describes a small clade that correlates by both gene clustering and phyletic pattern, although imperfectly, to the three gene system. Both this narrow clade, and the larger set of full-length homologous integral membrane proteins, have an especially well-conserved region near the C-terminus with an invariant tyrosine. The function is unknown.
Probab=97.59 E-value=0.032 Score=64.78 Aligned_cols=158 Identities=11% Similarity=0.019 Sum_probs=94.3
Q ss_pred HHHHHHHHhhcccccccccccccchhHHHHHHHHHHhcCccccccccCCCCcccCceecCccccchHHHHHHHHHHHHhh
Q 003973 28 IGVLAFSIRLFSVIKYESVIHEFDPYFNYRVTQFLTKNGIYDFWNWFDDRTWYPLGRVIGGTVYPGLTLTAGTIWWLLNS 107 (782)
Q Consensus 28 i~~~af~iRl~sv~~y~~iIhEFDPwfNyR~T~yl~~~G~~~f~nWFD~~sWYPlGR~vg~T~YPgLm~ta~~i~~ll~~ 107 (782)
++++++.+|+.=+.... .--+.||..=|-.++ +|.. .++=++.+-||. .+ |+...-..++++
T Consensus 71 l~~~~~i~ql~~i~~~~-~~p~~D~~~v~~~A~----~~~~--~~~~~Y~~~yPn--n~------g~~l~~~~l~ki--- 132 (483)
T TIGR03766 71 IFILLLILQLILVTALH-PLIGWDAGAVHTAAT----KSNE--SSISNYFSRNPN--NL------FLLLFMHFLYKL--- 132 (483)
T ss_pred HHHHHHHHHHHHHHHcC-CCcCcCHHHHHHHHh----cCCC--cccCceeeECCc--hH------HHHHHHHHHHHH---
Confidence 34456667776543333 335689976666666 2321 111123355664 22 333333334444
Q ss_pred cCCCcccceeeeehhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhhhh-hhhccccccchhHHHHHHHHHHHHHHH
Q 003973 108 LNIPLSVETVCVFTAPIFSAFASWATYLLTKEVKGAGAGLTAAALLAMVPSY-ISRSVAGSYDNEAVAIFALIITFYLYI 186 (782)
Q Consensus 108 lg~~v~i~~vcv~lppvfs~lt~i~~yll~~e~~~~~aGLlAA~~iAI~Pgy-isRSvaG~yDnE~iaif~llltfylwi 186 (782)
+|.+ ..-+.-++--++..++++..|.++|++.++.+|.+|+++.+..|++ ..+. .+=.|...+++++++++++.
T Consensus 133 fg~~--~~~~~~llNil~~~~si~liy~i~k~lf~~~~a~~a~~l~~l~~~~~~y~~---~~Ysd~~~l~~~~l~l~~~~ 207 (483)
T TIGR03766 133 FGET--SWLFFDVVNIVLVDLSALILYKAVKKVFNKKKAFVALYLFVLLLALSPYIL---IPYTDTWVLPFVSLFLFLYT 207 (483)
T ss_pred hCcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHHHHH
Confidence 4432 1111112334566789999999999999999999999999999997 4444 34456667777788877766
Q ss_pred HHhhcC----ChHHHHHHHHHHHHHH
Q 003973 187 KTLNTG----SLFYATLNAIAYFYMV 208 (782)
Q Consensus 187 kalktg----s~~~a~lagl~y~ymv 208 (782)
.-.++. ++.+++++|+..+...
T Consensus 208 ~~~~~~~~~~~~~~~Il~gillal~~ 233 (483)
T TIGR03766 208 VISKKTDLRKKIALSILLGVLLAIAY 233 (483)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 655532 3567788887655533
No 11
>PF10131 PTPS_related: 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; InterPro: IPR018776 This entry is found in various bacterial and archaeal hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. Its function has not yet been established, though it shows similarity to 6-pyruvoyl-tetrahydropterin synthase.
Probab=97.55 E-value=0.018 Score=68.91 Aligned_cols=115 Identities=18% Similarity=0.231 Sum_probs=84.8
Q ss_pred ccchHHH-HHHHHHHHHhhcCCCcccceeeeehhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhhhhhhhcccccc
Q 003973 90 VYPGLTL-TAGTIWWLLNSLNIPLSVETVCVFTAPIFSAFASWATYLLTKEVKGAGAGLTAAALLAMVPSYISRSVAGSY 168 (782)
Q Consensus 90 ~YPgLm~-ta~~i~~ll~~lg~~v~i~~vcv~lppvfs~lt~i~~yll~~e~~~~~aGLlAA~~iAI~PgyisRSvaG~y 168 (782)
-||+|.. ..+++..++ |-+..-..+++++. ..++++.+|++.|++..+.+++++|++...+|.++.=-..+.-
T Consensus 3 FYpPL~yyl~a~l~~l~---g~~~~Ay~l~~~L~---~~l~~~~~Y~~~R~~~~~~~A~l~aiLyl~~py~l~~~y~rgn 76 (616)
T PF10131_consen 3 FYPPLPYYLGALLSLLF---GNPIVAYKLFIFLA---FFLGGLGMYFLGRRLGRRKAAILAAILYLFSPYHLRNIYWRGN 76 (616)
T ss_pred eCCcHHHHHHHHHHHHh---CCHHHHHHHHHHHH---HHHHHHHHHHHHHHhcchhHHHHHHHHHHHhHHHHHHHHhcch
Confidence 4899985 555555555 22222233333332 2346778999999998889999999999999999776666666
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHh
Q 003973 169 DNEAVAIFALIITFYLYIKTLNTGSLFYATLNAIAYFYMVCS 210 (782)
Q Consensus 169 DnE~iaif~llltfylwikalktgs~~~a~lagl~y~ymv~a 210 (782)
--|.+|..++.+.++...+..++++.-+.++.++++..+..+
T Consensus 77 i~e~lA~~llPlvll~~~~~~~~~~~r~~~~lAl~~all~ls 118 (616)
T PF10131_consen 77 IPETLAFALLPLVLLFLYRFIKKRKYRYWILLALSMALLALS 118 (616)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 778999888888888888888888877777788877776654
No 12
>COG1807 ArnT 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]
Probab=97.42 E-value=0.0085 Score=69.94 Aligned_cols=171 Identities=19% Similarity=0.237 Sum_probs=118.5
Q ss_pred HHHHHHHHHhhcccccccccccccchhHHHHHHHHHHhcCccccccccCCCCcccCceecCccccchHHH-HHHHHHHHH
Q 003973 27 LIGVLAFSIRLFSVIKYESVIHEFDPYFNYRVTQFLTKNGIYDFWNWFDDRTWYPLGRVIGGTVYPGLTL-TAGTIWWLL 105 (782)
Q Consensus 27 li~~~af~iRl~sv~~y~~iIhEFDPwfNyR~T~yl~~~G~~~f~nWFD~~sWYPlGR~vg~T~YPgLm~-ta~~i~~ll 105 (782)
++.+.+...++.- +-+..... .|==.....++.+.+.| +|+.++.| |.+- -..|+++. +.+..+.+.
T Consensus 12 llll~~~~~~l~~-l~~~~~~~-~de~~~~~~~~~m~~s~-----~w~~~~~~---g~~~--~~kPPl~~Wl~a~~~~lf 79 (535)
T COG1807 12 LLLLIALALLLPG-LGSRPLWD-PDEARYAEIAREMLESG-----DWFTPQLL---GLPY--FEKPPLVYWLQALSYLLF 79 (535)
T ss_pred HHHHHHHHHHhCc-cccCCCCC-CCchhHHHHHHHHHHcC-----CCcceeeC---Cccc--cCCCcHHHHHHHHHHHHc
Confidence 3344455555543 22222222 33334567788999996 67766655 4333 36899984 555556653
Q ss_pred hhcCCCcccceeeeehhhHHH-HHHHHHHHHHHHHhcCchHHHHHHHHHHhhhhhhhhccccccchhHHHHHHHHHHHHH
Q 003973 106 NSLNIPLSVETVCVFTAPIFS-AFASWATYLLTKEVKGAGAGLTAAALLAMVPSYISRSVAGSYDNEAVAIFALIITFYL 184 (782)
Q Consensus 106 ~~lg~~v~i~~vcv~lppvfs-~lt~i~~yll~~e~~~~~aGLlAA~~iAI~PgyisRSvaG~yDnE~iaif~llltfyl 184 (782)
| .+++.+-+|..++ ++++++.|.++|++.++.+|++||++++..|..+.=+... -.|+.-+++.++++++
T Consensus 80 ---G----~~~~~~rl~~~l~~~~~~~l~y~l~k~l~~~~~a~~aali~~~~p~~~~~~~~~--~~D~~l~~f~~la~~~ 150 (535)
T COG1807 80 ---G----VNEWSARLPSALAGALTALLVYWLAKRLFGRLAALLAALILLLTPLFFLIGRLA--LLDAALAFFLTLALAL 150 (535)
T ss_pred ---C----cchHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhHHH--hhhHHHHHHHHHHHHH
Confidence 3 4667777887664 4699999999999998899999999999999986544443 4567788899999999
Q ss_pred HHHHhhc-CChHHHHHHHHHHHHHHHhccchhHHH
Q 003973 185 YIKTLNT-GSLFYATLNAIAYFYMVCSWGGYTFII 218 (782)
Q Consensus 185 wikalkt-gs~~~a~lagl~y~ymv~aWGGyvFi~ 218 (782)
+.++.+. |+..|..++|++.+.-..+=|=-.+++
T Consensus 151 ~~~~~~~~~~~~~~l~~gl~lGL~~ltKg~~~~~l 185 (535)
T COG1807 151 LYLALRARGKLKWLLLLGLALGLGFLTKGPGALLL 185 (535)
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHHHhchHHHHH
Confidence 9999987 477778888888888776655444444
No 13
>KOG3359 consensus Dolichyl-phosphate-mannose:protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.017 Score=68.99 Aligned_cols=186 Identities=20% Similarity=0.282 Sum_probs=118.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhcccccccccc-cccchhHHHHHHHHHHhcCccccccccCCCCcccCceecCccccch
Q 003973 15 AFGNVLSFFILLLIGVLAFSIRLFSVIKYESVI-HEFDPYFNYRVTQFLTKNGIYDFWNWFDDRTWYPLGRVIGGTVYPG 93 (782)
Q Consensus 15 ~~~~ll~~~iL~li~~~af~iRl~sv~~y~~iI-hEFDPwfNyR~T~yl~~~G~~~f~nWFD~~sWYPlGR~vg~T~YPg 93 (782)
....+-..+.++++.+++|.+|++-+..-..|+ .|- .|-=-+..|+-.+-| || +.|+
T Consensus 28 ~~~~l~~~~~~~~lt~l~f~~Rf~ki~~p~~VVwDE~--HfGkf~S~Yl~~~ff------~D--------------vHPP 85 (723)
T KOG3359|consen 28 RVKSLKEKLLVVLLTVLAFITRFYKIATPNHVVWDEA--HFGKFASYYLNNIFF------FD--------------VHPP 85 (723)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhccCCCeEEEecc--cccchHHHHhcCcee------ec--------------cCch
Confidence 333444667778888999999998865544444 331 111112223322211 22 3566
Q ss_pred H--HHHHHHHHHHHhhcCCCccccee------------eeehhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHhhhh
Q 003973 94 L--TLTAGTIWWLLNSLNIPLSVETV------------CVFTAPIFSAFASWATYLLTKEVK-GAGAGLTAAALLAMVPS 158 (782)
Q Consensus 94 L--m~ta~~i~~ll~~lg~~v~i~~v------------cv~lppvfs~lt~i~~yll~~e~~-~~~aGLlAA~~iAI~Pg 158 (782)
| |+++..-| +.+.-| +.+..++ -=++++.+|+||+.++|+.+||++ +..+++++|+++++=-+
T Consensus 86 lgKmL~al~g~-L~GydG-~f~f~~~g~~~~~~~~y~~mR~f~a~lgsl~vp~~y~t~~~~~~s~~aa~l~allv~~dns 163 (723)
T KOG3359|consen 86 LGKMLIALVGY-LAGYDG-SFDFQSIGEYYPNGVPYVGMRLFSALLGSLTVPLAYLTLKELGFSRLAAALAALLVLFDNS 163 (723)
T ss_pred HHHHHHHHHHH-HhCCCC-CccccCCCccCCCCCchHhHHHHHHHHHhHHHHHHHHHHHHhcccHHHHHHHHHHHhhccc
Confidence 6 33333322 222111 1111111 124678999999999999999996 78899999999998888
Q ss_pred h--hhhccccccchhHHHHHHHHHHHHHHHHHh--hcC--C---hHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHH
Q 003973 159 Y--ISRSVAGSYDNEAVAIFALIITFYLYIKTL--NTG--S---LFYATLNAIAYFYMVCS-WGGYTFIINLIPMHVLLC 228 (782)
Q Consensus 159 y--isRSvaG~yDnE~iaif~llltfylwikal--ktg--s---~~~a~lagl~y~ymv~a-WGGyvFi~nlI~l~~~vl 228 (782)
+ ++|=+ ==|++.+|+++.++|+++|-- +.. | +.|-.++|++.+...++ |-| .|++.++.+++...
T Consensus 164 ~~T~sr~I----LLDs~Llff~~~~~y~~~r~~~~~~~pfs~~W~~wL~~tGvsLgcaiSvK~vG-lft~~~Vgl~~v~~ 238 (723)
T KOG3359|consen 164 LVTLSRFI----LLDSMLLFFMAAAVYCFVRFYTQRKRPFSLRWWKWLLLTGVSLGCAISVKYVG-LFTIALVGLYTVRE 238 (723)
T ss_pred chhhhhHH----HHhHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhhheeehhhhh-HHHHHHHHHHHHHH
Confidence 7 44432 247899999999999999976 332 2 57889999999987644 555 46666777777654
Q ss_pred H
Q 003973 229 I 229 (782)
Q Consensus 229 ~ 229 (782)
+
T Consensus 239 L 239 (723)
T KOG3359|consen 239 L 239 (723)
T ss_pred H
Confidence 3
No 14
>COG1287 Uncharacterized membrane protein, required for N-linked glycosylation [General function prediction only]
Probab=97.02 E-value=0.042 Score=67.45 Aligned_cols=48 Identities=29% Similarity=0.450 Sum_probs=41.6
Q ss_pred cccchhHHHHHHHHhhcCCCCCee-eeeccccceee--ecccccccccCCC
Q 003973 560 LHVFDDFREAYAWLRHNTEVDDKV-ASWWDYGYQTT--AMANRTVIVDNNT 607 (782)
Q Consensus 560 ~~i~DD~reAy~WLr~NTp~da~V-mSWWDYGYqIt--~manRttlvDNNT 607 (782)
+...+.|..|+.|+|.|+.+...+ .+||||||||. .-++|..++|+.-
T Consensus 474 ~~~~~~~~~a~p~~~~~~~~~~~~~~~w~d~~~wi~~~~~~~~~~~~~~~~ 524 (773)
T COG1287 474 PVLIVLASLALPWLRNSTNPSDVTGAAWWDAGYWIRSSTPDNSLDYADGYE 524 (773)
T ss_pred HHHHHHHHHHhHHHHhccccccccccccccccceEEeecCCCCcccccccC
Confidence 567899999999999999999999 99999999999 6677767666543
No 15
>PLN02816 mannosyltransferase
Probab=96.58 E-value=1.2 Score=52.80 Aligned_cols=118 Identities=19% Similarity=0.249 Sum_probs=68.1
Q ss_pred cchhHHHHHHHHHHhcCccccccccCCCCcccCceecCccccchHHHHHHHHHHHHhhcCCCcccceeeeehhh-----H
Q 003973 50 FDPYFNYRVTQFLTKNGIYDFWNWFDDRTWYPLGRVIGGTVYPGLTLTAGTIWWLLNSLNIPLSVETVCVFTAP-----I 124 (782)
Q Consensus 50 FDPwfNyR~T~yl~~~G~~~f~nWFD~~sWYPlGR~vg~T~YPgLm~ta~~i~~ll~~lg~~v~i~~vcv~lpp-----v 124 (782)
-|=+||+----+-.-.|+ ++..| -|=|- +-.-+||.+.. .+|++++.++.+ ....++..| +
T Consensus 62 pDE~fQslE~ah~~vfG~-G~lTW----Ew~~~---lRS~~~Pll~a---~~~~~~~~l~~~---~~~~~~~~pRl~~al 127 (546)
T PLN02816 62 PDEHWQSLEVAHRTIFGY-GYMTW----EWKRG---IRSYLHPMLFA---FLYKLLQVTGLD---TPYIMIKAPRLMQSI 127 (546)
T ss_pred CCchhhhHHHHHHHHhCC-cccce----ecCCC---ccchhHHHHHH---HHHHHHHHhcCC---cHHHHHHHHHHHHHH
Confidence 356788876654444565 55444 23332 33347888653 477777776642 222222223 4
Q ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhh---hhhhhccccccchhHHHHHHHHHHHHHHH
Q 003973 125 FSAFASWATYLLTKEVKGAGAGLTAAALLAMVP---SYISRSVAGSYDNEAVAIFALIITFYLYI 186 (782)
Q Consensus 125 fs~lt~i~~yll~~e~~~~~aGLlAA~~iAI~P---gyisRSvaG~yDnE~iaif~llltfylwi 186 (782)
+++++-..+|-++++..|+..+..+.++....| -+.+||..- +++..+.++++|.|.
T Consensus 128 ~sal~D~~l~kl~~~~~g~~~A~~~L~~sl~swf~~y~~sRTfSN-----slEt~Lt~lAL~~w~ 187 (546)
T PLN02816 128 FSAIGDLYLYKLSDALYGGNVATWSLFCQMANWFIFFCLNRTFSN-----CLETVLTIMGLYYWP 187 (546)
T ss_pred HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhCccchh-----HHHHHHHHHHHHHhh
Confidence 455555666677776667666666666666666 346787644 555666566666653
No 16
>PF03901 Glyco_transf_22: Alg9-like mannosyltransferase family; InterPro: IPR005599 Members of this family are glycosylphosphatidylinositol mannosyltransferase enzymes 2.4.1.- from EC [, ]. At least some members are localised in endoplasmic reticulum and involved in GPI anchor biosynthesis [, ]. In yeast the SMP3 (YOR149C) has been implemented in plasmid stability [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0006506 GPI anchor biosynthetic process, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=96.08 E-value=0.98 Score=51.28 Aligned_cols=142 Identities=22% Similarity=0.361 Sum_probs=81.2
Q ss_pred HHHHHhhcccccccccccccchhHHHHHHHHHHhcCccccccccCCCCcccCceecCccccchHHHHHHHHHHHHhhcCC
Q 003973 31 LAFSIRLFSVIKYESVIHEFDPYFNYRVTQFLTKNGIYDFWNWFDDRTWYPLGRVIGGTVYPGLTLTAGTIWWLLNSLNI 110 (782)
Q Consensus 31 ~af~iRl~sv~~y~~iIhEFDPwfNyR~T~yl~~~G~~~f~nWFD~~sWYPlGR~vg~T~YPgLm~ta~~i~~ll~~lg~ 110 (782)
+.+..|+..+.-- .....-|=+||+-..-+..-+|. ++..| |.+.=+|. |.. +||.+.. .+++.++.++.
T Consensus 5 ~ll~~R~~~a~~~-~~~f~pDE~fq~~E~ah~~~~g~-g~~tW-E~~~~~~i-RS~---~~p~i~~---~~~~~~~~~~~ 74 (418)
T PF03901_consen 5 LLLAFRLLNALFP-QTSFHPDEYFQSLEPAHRLVFGY-GYLTW-EWSPFPGI-RSW---LFPLIFA---IPYKLLARLGL 74 (418)
T ss_pred HHHHHHHHHHHhc-cCCCCCCcccccHHhhhhhhcCc-cchhh-hhccCCCC-CCh---HHHHHHH---HHHHHHHHHhh
Confidence 3455666553222 22237788999987765555663 55444 22222343 555 6786664 34455554443
Q ss_pred Ccccceeeeehhh-HH----HHHHHHHHHHHHHHhcCchHHHHHHHHHHhhhhh---hhhccccccchhHHHHHHHHHHH
Q 003973 111 PLSVETVCVFTAP-IF----SAFASWATYLLTKEVKGAGAGLTAAALLAMVPSY---ISRSVAGSYDNEAVAIFALIITF 182 (782)
Q Consensus 111 ~v~i~~vcv~lpp-vf----s~lt~i~~yll~~e~~~~~aGLlAA~~iAI~Pgy---isRSvaG~yDnE~iaif~llltf 182 (782)
+ ...+++..| ++ ++++-...|-++++..+..++..+.++.+..+.. .+|+.. +.+|..+.++.+
T Consensus 75 ~---~~~~~~~~~Rl~~~~~s~~~d~~~~~~~~~~~~~~~a~~~l~l~~~s~~~~~~~~Rtls-----ns~e~~l~~~al 146 (418)
T PF03901_consen 75 D---SPWAVFYAPRLVLALLSALSDYYLYRLVKRLFGSSVALWALLLSLFSWFMFYYSSRTLS-----NSFETILVLLAL 146 (418)
T ss_pred c---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhHHHhhhHHHHhhcccCc-----cHHHHHHHHHHH
Confidence 2 122223333 33 3444444455444545666777777777777764 778775 556778888888
Q ss_pred HHHHHHhh
Q 003973 183 YLYIKTLN 190 (782)
Q Consensus 183 ylwikalk 190 (782)
++|.++.+
T Consensus 147 ~~~~~~~~ 154 (418)
T PF03901_consen 147 YLWLRSLS 154 (418)
T ss_pred HHHHHhhc
Confidence 88888654
No 17
>COG1928 PMT1 Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.048 Score=65.24 Aligned_cols=105 Identities=15% Similarity=0.284 Sum_probs=80.5
Q ss_pred ehhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHhhhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhcC-----C
Q 003973 120 FTAPIFSAFASWATYLLTKEVK-GAGAGLTAAALLAMVPSYISRSVAGSYDNEAVAIFALIITFYLYIKTLNTG-----S 193 (782)
Q Consensus 120 ~lppvfs~lt~i~~yll~~e~~-~~~aGLlAA~~iAI~PgyisRSvaG~yDnE~iaif~llltfylwikalktg-----s 193 (782)
++.+++|++|+.++|+.+|+++ ++.++++|+++.++=-+++.=|-..- -|+..+|++..++|+++|--+.. -
T Consensus 114 ~f~A~lgsl~vpl~y~t~r~~~~s~l~~~l~~llv~~dn~~~t~sR~IL--LDs~LlfF~~~~~y~~~r~~~~~p~s~~w 191 (699)
T COG1928 114 FFNALLGSLTVPLVYLIARRIGYSRLVAALAGLLVAFDNSFVTESRFIL--LDSFLLFFIVAAAYCFLRFHRQQPFSRRW 191 (699)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHHhccchhhhhHHHH--HHHHHHHHHHHHHHHHHHHHhhChhhHHH
Confidence 4668999999999999999996 67899999999998888743333333 56889999999999999998754 3
Q ss_pred hHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHH
Q 003973 194 LFYATLNAIAYFYMVCS-WGGYTFIINLIPMHVLL 227 (782)
Q Consensus 194 ~~~a~lagl~y~ymv~a-WGGyvFi~nlI~l~~~v 227 (782)
+.|-+++|++.|.-.++ |-|- |.+..+.+.+..
T Consensus 192 ~~~Ll~tGisLGcaiS~KwvGl-ft~~~vgl~~v~ 225 (699)
T COG1928 192 LKWLLLTGISLGCAISVKWVGL-FTTGVVGLLAVY 225 (699)
T ss_pred HHHHHHhcceeeeEEEeeehhH-HHHHHHHHHHHH
Confidence 67889999999886543 6652 445555555543
No 18
>PF11028 DUF2723: Protein of unknown function (DUF2723); InterPro: IPR021280 This family is conserved in bacteria. The function is not known.
Probab=95.36 E-value=0.22 Score=50.83 Aligned_cols=127 Identities=20% Similarity=0.192 Sum_probs=82.5
Q ss_pred cchHHHHHHHHHHHHhhcCCCcccceeeeehhhHHHHHHHHHHHHHHHHhcCc--------------hHHHHHHHHHHhh
Q 003973 91 YPGLTLTAGTIWWLLNSLNIPLSVETVCVFTAPIFSAFASWATYLLTKEVKGA--------------GAGLTAAALLAMV 156 (782)
Q Consensus 91 YPgLm~ta~~i~~ll~~lg~~v~i~~vcv~lppvfs~lt~i~~yll~~e~~~~--------------~aGLlAA~~iAI~ 156 (782)
||-.++.+-+ ..++- .+.++--..-++..++|++|+...|+.+.++.++ .+|+++|+..+.+
T Consensus 20 yPlf~llg~l-f~~lp---~~~~ia~~vNl~Sal~sA~tv~~l~~~~~~l~~~~~~~~~~~~~~~~~~a~lv~al~fafS 95 (178)
T PF11028_consen 20 YPLFTLLGRL-FSLLP---DFGNIAWRVNLLSALSSALTVLFLFWSITRLLRKLPEEPSTAQTIAILGAGLVGALAFAFS 95 (178)
T ss_pred cHHHHHHHHH-HHHcC---CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhh
Confidence 7766666654 33332 1123322334777899999999999999998655 7999999999999
Q ss_pred hhhhhhccccccchhHHHHHHHHHHHHHHHHHhhc----CC----hHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 003973 157 PSYISRSVAGSYDNEAVAIFALIITFYLYIKTLNT----GS----LFYATLNAIAYFYMVCSWGGYTFIINLIPMHVLLC 228 (782)
Q Consensus 157 PgyisRSvaG~yDnE~iaif~llltfylwikalkt----gs----~~~a~lagl~y~ymv~aWGGyvFi~nlI~l~~~vl 228 (782)
|..=.-++-++ =-+.+.++..+.+|+.+|-.+. .+ +..+.++|++.+-- ...+-.||.-++++
T Consensus 96 ~sfW~~Av~aE--VYal~~l~~al~~~l~l~w~~~~~~~~~~r~l~l~afl~GLs~g~H-------~~~ll~lP~~~~~~ 166 (178)
T PF11028_consen 96 DSFWFQAVEAE--VYALSSLFTALLLWLLLKWEREADEPRSDRWLLLIAFLCGLSLGVH-------LLNLLALPAIALLY 166 (178)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 99977766554 4566677777778887776654 23 33445666665443 23334455544444
Q ss_pred HH
Q 003973 229 IV 230 (782)
Q Consensus 229 ~l 230 (782)
..
T Consensus 167 ~~ 168 (178)
T PF11028_consen 167 FF 168 (178)
T ss_pred HH
Confidence 43
No 19
>COG5305 Predicted membrane protein [Function unknown]
Probab=95.22 E-value=2.9 Score=49.58 Aligned_cols=116 Identities=24% Similarity=0.309 Sum_probs=85.4
Q ss_pred cccccCCCCcccCceecCccc---------cchHHHHHHHHHHHHhhcCCCcccceeeeehhhHHHHHHHHHHHHHHHHh
Q 003973 70 FWNWFDDRTWYPLGRVIGGTV---------YPGLTLTAGTIWWLLNSLNIPLSVETVCVFTAPIFSAFASWATYLLTKEV 140 (782)
Q Consensus 70 f~nWFD~~sWYPlGR~vg~T~---------YPgLm~ta~~i~~ll~~lg~~v~i~~vcv~lppvfs~lt~i~~yll~~e~ 140 (782)
..-|+|+-.=+|-|+.+..|+ -|+|-+..+-.|..+ || +..-+.=-++..+++++...+|-++||+
T Consensus 67 ~~l~l~~~~~~~~s~~~~~~v~~lll~~~~~~PLYfll~h~W~~l--F~---~s~~~~Rsls~L~~~~ai~~~y~l~r~l 141 (552)
T COG5305 67 PYLWLDEFQSISASKTVIETVLSLLLELLVHPPLYFLLAHFWMAL--FG---NSLLASRSLSALLSALAIPLVYWLGREL 141 (552)
T ss_pred chhhhhhcccCCCcccccchHHHHHhccCCCCCeeehHHHHHHHH--hc---hHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999654443 455443333333222 33 3444555678899999999999999999
Q ss_pred cCchHHHHHHHHHHhhhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhcC
Q 003973 141 KGAGAGLTAAALLAMVPSYISRSVAGSYDNEAVAIFALIITFYLYIKTLNTG 192 (782)
Q Consensus 141 ~~~~aGLlAA~~iAI~PgyisRSvaG~yDnE~iaif~llltfylwikalktg 192 (782)
.++..|++||.++|++|-++--+--+ -+-.+++...+..-.+.++|+|..
T Consensus 142 ~~~~~a~la~~~~AisP~~i~~~qe~--R~y~L~~~~~lis~~~Ll~ai~~~ 191 (552)
T COG5305 142 FGSTTALLAAALMAISPFHIFYSQEA--RSYALAVATTLISATLLLRAIRLP 191 (552)
T ss_pred HHhhHHHHHHHHHccChHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHccCc
Confidence 99989999999999999997654322 244677788888889999999863
No 20
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=94.88 E-value=1.6 Score=53.92 Aligned_cols=61 Identities=20% Similarity=0.306 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHH--HHhccchhHHHHHHHHHHHHHHHHccC
Q 003973 174 AIFALIITFYLYIKTLNTG-SLFYATLNAIAYFYM--VCSWGGYTFIINLIPMHVLLCIVTGRY 234 (782)
Q Consensus 174 aif~llltfylwikalktg-s~~~a~lagl~y~ym--v~aWGGyvFi~nlI~l~~~vl~l~gr~ 234 (782)
-+.++-+++|+|+|-.+.+ +-..++++|++|+.. +..|...+..++.+++.=+++..+.|.
T Consensus 99 k~~lag~~~~~~l~~~~~~~~~~~~~i~s~~Yafsg~~~~~~~~~~fld~~i~lPL~llgie~~ 162 (843)
T PF09586_consen 99 KIGLAGLFFYLYLRKFKKSRSDWAALIGSLLYAFSGYVIYYSFNIMFLDAMILLPLLLLGIERL 162 (843)
T ss_pred HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3556677888888877653 358899999999976 677776677777777766666666665
No 21
>COG4745 Predicted membrane-bound mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.42 E-value=0.57 Score=53.71 Aligned_cols=146 Identities=18% Similarity=0.265 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhhcccccccccccccchhHHHHHHHHHHhcCccccccccCCCCcccCceec-CccccchHHHHHHHHHHH
Q 003973 26 LLIGVLAFSIRLFSVIKYESVIHEFDPYFNYRVTQFLTKNGIYDFWNWFDDRTWYPLGRVI-GGTVYPGLTLTAGTIWWL 104 (782)
Q Consensus 26 ~li~~~af~iRl~sv~~y~~iIhEFDPwfNyR~T~yl~~~G~~~f~nWFD~~sWYPlGR~v-g~T~YPgLm~ta~~i~~l 104 (782)
+.+...|..+||+. --+..+|--..=--++.-||| |+|-+ + | ||+ -| |-|.-.-.+..++
T Consensus 19 ~~vv~~Al~~RL~~--Lg~r~~h~DEs~~~~w~Lk~l-~~Gaw---~-Y---------rPi~HG---PfL~hvn~avF~~ 79 (556)
T COG4745 19 IAVVAIALLARLYN--LGLRPFHFDESRHATWILKYL-EQGAW---S-Y---------RPIYHG---PFLYHVNYAVFGL 79 (556)
T ss_pred HHHHHHHHHHHHHh--cCCCccccchhhHHHHHHHHH-hcCcc---e-e---------cccccC---chhhhhhhhhhhh
Confidence 34445688899986 566677765555556666776 55532 2 1 444 11 2233233333333
Q ss_pred HhhcCCCccccee-eeehhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhhhh--hhhccccccchhHHHHHHHHHH
Q 003973 105 LNSLNIPLSVETV-CVFTAPIFSAFASWATYLLTKEVKGAGAGLTAAALLAMVPSY--ISRSVAGSYDNEAVAIFALIIT 181 (782)
Q Consensus 105 l~~lg~~v~i~~v-cv~lppvfs~lt~i~~yll~~e~~~~~aGLlAA~~iAI~Pgy--isRSvaG~yDnE~iaif~lllt 181 (782)
+|. .|. .=+.|+++|++..+..+|+-+|+++. .-+..+.+.|+.|-. .|| +.-|+.+-.++++++
T Consensus 80 ---lGa----sDataRlvvAv~G~llpL~awL~R~rL~d~-evlal~~LLA~sPvlVYYSR----FmR~Dl~la~ftl~a 147 (556)
T COG4745 80 ---LGA----SDATARLVVAVTGVLLPLTAWLYRTRLGDK-EVLALATLLAFSPVLVYYSR----FMRNDLLLAAFTLLA 147 (556)
T ss_pred ---ccc----chhhhhhhHHHhhhHHHHHHHHHHHhccch-HHHHHHHHHhcChhhhhHHH----HHhhhHHHHHHHHHH
Confidence 343 222 33566788999999999999999664 455666778888875 677 668999999999999
Q ss_pred HHHHHHHhhcCChHHHHHHHH
Q 003973 182 FYLYIKTLNTGSLFYATLNAI 202 (782)
Q Consensus 182 fylwikalktgs~~~a~lagl 202 (782)
.++.+|.+.++...|--+++.
T Consensus 148 Vg~~vR~lDt~R~~yL~~sA~ 168 (556)
T COG4745 148 VGFAVRYLDTERFRYLYASAV 168 (556)
T ss_pred HHHHHHHhhcccccchhhhhh
Confidence 999999999986544444444
No 22
>KOG4587 consensus Predicted membrane protein [Function unknown]
Probab=92.58 E-value=1.5 Score=50.70 Aligned_cols=79 Identities=22% Similarity=0.312 Sum_probs=52.1
Q ss_pred CCcccchhHHHHHHHHhhcCCCCCeeeeeccccceeeecccccccccCCCCcchhHhHHhh---------hhCC-CHHHH
Q 003973 558 EGLHVFDDFREAYAWLRHNTEVDDKVASWWDYGYQTTAMANRTVIVDNNTWNNTHIATVGT---------AMSS-PEKAA 627 (782)
Q Consensus 558 ~G~~i~DD~reAy~WLr~NTp~da~VmSWWDYGYqIt~manRttlvDNNTwN~thIa~vGk---------~laS-~E~~A 627 (782)
.|+.-+||--+-.+|++.||.+||+-.- -.-.||+=---.=-.--||.|-...|- +.+- .-+|-
T Consensus 457 ~ge~Sn~dqe~l~eWIk~nTk~DAVFAG------~mp~ma~VkLttlRPIVNHpHyE~~gireRT~~VYSmySrk~~~ev 530 (605)
T KOG4587|consen 457 RGEKSNDDQESLLEWIKLNTKRDAVFAG------PMPIMATVKLTTLRPIVNHPHYEMRGIRERTEHVYSMYSRKQSSEV 530 (605)
T ss_pred ccccCCCCHHHHHHHHHhcCcccceeec------cCceeeEEeeeecccccCCchhhhhhHHHHHHHHHHHhccccHHHH
Confidence 4566799999999999999999998432 222333311001112236777765543 3333 57889
Q ss_pred HHHHhhcCCCEEEEE
Q 003973 628 WEIFNSLDVKYVLVV 642 (782)
Q Consensus 628 ~~Ilr~ldvdYVLVi 642 (782)
|+++.+++++|.++-
T Consensus 531 ~~~~~~lkvnY~i~~ 545 (605)
T KOG4587|consen 531 YNQCAQLKVNYLIIS 545 (605)
T ss_pred HHHHHHhCCcEEEEE
Confidence 999999999997664
No 23
>PF09971 DUF2206: Predicted membrane protein (DUF2206); InterPro: IPR018701 This family of predicted membrane proteins from archaea has no known function.
Probab=92.35 E-value=3.4 Score=46.76 Aligned_cols=79 Identities=16% Similarity=0.173 Sum_probs=43.5
Q ss_pred ccCCCChhhHHHhhHHHHHHH-HHHHHHHh-c--CCCCc--h---HHHH---HHHHHHH---HHHHHH--HHHHHHHHHH
Q 003973 356 EHQPPTWPSYFMDINVLAFLV-PAGIIACF-L--PLSDA--S---SFVV---LYIVTSV---YFSGVM--VRLMLVFAPA 418 (782)
Q Consensus 356 EHqPt~w~sff~dl~~l~~~~-p~Gl~~~~-~--~~~d~--~---~Fli---ly~v~a~---Yfa~~m--vRL~l~laP~ 418 (782)
.-.++.+......+|..+.++ .+|+..+. + +.+.+ . .|.+ +.-++++ |||++| .||-.++-..
T Consensus 107 ~~~~s~l~~i~k~i~l~~~~~i~IG~l~~~~~~~~~k~~~~~~Yl~fs~~~~iiLia~i~lP~fa~~mn~~RLy~itli~ 186 (367)
T PF09971_consen 107 TKSSSLLHSISKYIHLFIQFFIIIGFLALILKRIYKKIKFNIEYLAFSLVSLIILIASIVLPFFASVMNPTRLYQITLIF 186 (367)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhhhcCHHHHHHHHHHH
Confidence 444555666666677775544 67877652 1 11211 2 1211 2233334 776554 6887776666
Q ss_pred HHHHHHHHHHHHHHHH
Q 003973 419 ACIMSGIALSQAFDVF 434 (782)
Q Consensus 419 v~ilagi~is~l~~~~ 434 (782)
.|..+.+|...+.+..
T Consensus 187 LAPf~iiG~~~~~~~i 202 (367)
T PF09971_consen 187 LAPFFIIGGITLFKLI 202 (367)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666665553
No 24
>PF04188 Mannosyl_trans2: Mannosyltransferase (PIG-V)); InterPro: IPR007315 This is a family of eukaryotic ER membrane proteins that are involved in the synthesis of glycosylphosphatidylinositol (GPI), a glycolipid that anchors many proteins to the eukaryotic cell surface. Proteins in this family are involved in transferring the second mannose in the biosynthetic pathway of GPI [], [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=90.94 E-value=1.7 Score=50.35 Aligned_cols=69 Identities=23% Similarity=0.232 Sum_probs=53.6
Q ss_pred eeehhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHhhhhhhhhccccccchhHHHHHHHHHHHHHHHHHh
Q 003973 118 CVFTAPIFSAFASWATYLLTKEVK-GAGAGLTAAALLAMVPSYISRSVAGSYDNEAVAIFALIITFYLYIKTL 189 (782)
Q Consensus 118 cv~lppvfs~lt~i~~yll~~e~~-~~~aGLlAA~~iAI~PgyisRSvaG~yDnE~iaif~llltfylwikal 189 (782)
++.+.-+...++++..|-++++.. +++.++.|++++.+.|+-+.=|.+ =.|++-.++....+|+..|+.
T Consensus 115 ~~~vs~~~~~la~~~L~~l~~~~~~~~~~a~~a~ll~~~~PasiF~sa~---YsEslf~~lsf~gl~~~~~~~ 184 (443)
T PF04188_consen 115 GILVSNVAFLLAAVALYRLTRRVFKSRKLALLAALLFIFSPASIFLSAP---YSESLFALLSFAGLYLLERGR 184 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHccHHHHhhcC---ccHHHHHHHHHHHHHHHHhcc
Confidence 334444556678888999998874 778999999999999998765533 469988888888888887665
No 25
>PF11847 DUF3367: Domain of unknown function (DUF3367); InterPro: IPR021798 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 667 to 694 amino acids in length.
Probab=88.28 E-value=14 Score=44.89 Aligned_cols=123 Identities=18% Similarity=0.291 Sum_probs=88.0
Q ss_pred CcccCceec---CccccchHHHHHHHHHHHHhhcCCCcccceeeeehhhHHHHHHHHHHHHHHHHh--cCchHHHHHHHH
Q 003973 78 TWYPLGRVI---GGTVYPGLTLTAGTIWWLLNSLNIPLSVETVCVFTAPIFSAFASWATYLLTKEV--KGAGAGLTAAAL 152 (782)
Q Consensus 78 sWYPlGR~v---g~T~YPgLm~ta~~i~~ll~~lg~~v~i~~vcv~lppvfs~lt~i~~yll~~e~--~~~~aGLlAA~~ 152 (782)
.-+|+|-.. -|=+||- +.+|.+++.+|+|.=+-+=+ |. .+.-.++..-++.+++++ +++...++||+.
T Consensus 40 ~~~~~GqlqNQayGYLFP~-----G~Ff~l~~~lglP~Wi~QRL-Ww-allL~vaf~G~~rLa~~L~igs~~~r~~Aa~~ 112 (680)
T PF11847_consen 40 DTFPFGQLQNQAYGYLFPM-----GPFFALGDLLGLPDWITQRL-WW-ALLLTVAFWGALRLARALGIGSPASRVLAAVA 112 (680)
T ss_pred CCCCCccccccceeeeccc-----hHHHHHhhhccCCHHHHHHH-HH-HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 344555433 3346676 56777888888774322211 11 111233556677888888 567789999999
Q ss_pred HHhhhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhc--CChHHHHHHHHHHHHHHH
Q 003973 153 LAMVPSYISRSVAGSYDNEAVAIFALIITFYLYIKTLNT--GSLFYATLNAIAYFYMVC 209 (782)
Q Consensus 153 iAI~PgyisRSvaG~yDnE~iaif~llltfylwikalkt--gs~~~a~lagl~y~ymv~ 209 (782)
.+++|-.+.. .|+--.|..-..++--...-++++++. ..+-+++.+|++...|..
T Consensus 113 YaLsPr~Ltt--lg~iSse~lP~al~PWvLlPlv~~~r~~~~~rr~aa~salaV~~mGa 169 (680)
T PF11847_consen 113 YALSPRVLTT--LGAISSETLPMALAPWVLLPLVRALRGRGSPRRAAARSALAVALMGA 169 (680)
T ss_pred HHhChHHHHH--HHHHHHHHHHHHHhhHHHHHHHHhhccCcchhHHHHHHHHHHHHHhh
Confidence 9999998877 788888999999888899999999986 457788889998888853
No 26
>COG5617 Predicted integral membrane protein [Function unknown]
Probab=88.10 E-value=48 Score=40.99 Aligned_cols=134 Identities=24% Similarity=0.295 Sum_probs=86.2
Q ss_pred cccchhHHHHHHHHHHhcC-ccccc--cccCCCCcccCceecCccccchHHHHHHHHHHHHhhcCCCcccceeeeehhhH
Q 003973 48 HEFDPYFNYRVTQFLTKNG-IYDFW--NWFDDRTWYPLGRVIGGTVYPGLTLTAGTIWWLLNSLNIPLSVETVCVFTAPI 124 (782)
Q Consensus 48 hEFDPwfNyR~T~yl~~~G-~~~f~--nWFD~~sWYPlGR~vg~T~YPgLm~ta~~i~~ll~~lg~~v~i~~vcv~lppv 124 (782)
|-|--||-|+. .+.| +|+.| +|| .=||.=| -||+|....++.-..+ +|-++.-..+|..++=
T Consensus 36 Hl~K~~~l~~~----l~~G~wy~~w~~~WY---~G~pflr-----YypPl~Yli~aal~~l--~~d~~~t~~v~~~la~- 100 (801)
T COG5617 36 HLFKAWFLYHS----LKDGNWYPPWCEYWY---NGYPFLR-----YYPPLSYLIGAALNFL--LGDVVTTYAVFLMLAF- 100 (801)
T ss_pred eeeehHHHHHH----HhcCCCCCCcchhhh---cCCCcce-----ecCcHHHHHHHHHHHh--hcChhHHHHHHHHHHH-
Confidence 66777776654 3344 32222 243 3344433 4899986555544444 3456667777766643
Q ss_pred HHHHHHHHHHHHHHHhc-CchHHHHHHHHHHhhhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhcCChHHHHH
Q 003973 125 FSAFASWATYLLTKEVK-GAGAGLTAAALLAMVPSYISRSVAGSYDNEAVAIFALIITFYLYIKTLNTGSLFYATL 199 (782)
Q Consensus 125 fs~lt~i~~yll~~e~~-~~~aGLlAA~~iAI~PgyisRSvaG~yDnE~iaif~llltfylwikalktgs~~~a~l 199 (782)
+.....|++.|..+ ...-++++|++.-.+|.++-=+--+.-=--+.+|-+..+.++++-+.++.|.-.+..+
T Consensus 101 ---llG~~~~~~~r~~g~t~~ia~I~alL~ltsp~~l~vlf~EGniP~v~~i~f~pl~l~~l~~~~~~Gkk~r~~l 173 (801)
T COG5617 101 ---LLGAGGWLLWRLRGRTGFIALISALLWLTSPENLKVLFIEGNIPRVLAIGFGPLALGLLERFLERGKKERSLL 173 (801)
T ss_pred ---HHHHHHHHHHHhhccccchHHHHHHHHHhChhheEEEEecCcccHHHHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 55566677777665 4568899999999999997766665555567777788888888888887665554443
No 27
>PF09852 DUF2079: Predicted membrane protein (DUF2079); InterPro: IPR018650 This entry is represented by Sulfolobus virus STSV1, Orf64. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains a family of various integral membrane proteins with no known function.
Probab=87.35 E-value=11 Score=43.69 Aligned_cols=100 Identities=18% Similarity=0.208 Sum_probs=67.2
Q ss_pred ccchHHHHHHHHHHHHhhcCCCcccceeeeehhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHhhhhhhhhcccccc
Q 003973 90 VYPGLTLTAGTIWWLLNSLNIPLSVETVCVFTAPIFSAFASWATYLLTKEVK-GAGAGLTAAALLAMVPSYISRSVAGSY 168 (782)
Q Consensus 90 ~YPgLm~ta~~i~~ll~~lg~~v~i~~vcv~lppvfs~lt~i~~yll~~e~~-~~~aGLlAA~~iAI~PgyisRSvaG~y 168 (782)
.-|-+.. .+-+|++.. .+ ...- .+-.++-++++++.|.++|+.. ++..|++.|+.....|+-..-.. ..|
T Consensus 42 fsPil~l-l~Ply~l~P---s~---~tLl-i~Qal~la~~~~pl~~lar~~~~~~~~a~~~~~~ylL~p~~~~~~~-~dF 112 (449)
T PF09852_consen 42 FSPILYL-LAPLYRLFP---SP---LTLL-IVQALLLALGAIPLYRLARRRLLSRRLALLIALAYLLSPGLQGANL-FDF 112 (449)
T ss_pred chHHHHH-HHHHHHHhC---CH---HHHH-HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhHHHHhhhh-CCC
Confidence 3454444 445777752 22 2222 3346677899999999999997 88999999999999999886543 455
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHH
Q 003973 169 DNEAVAIFALIITFYLYIKTLNTGSLFYATLNAI 202 (782)
Q Consensus 169 DnE~iaif~llltfylwikalktgs~~~a~lagl 202 (782)
--|++++.++.++++++ +++++...+++++
T Consensus 113 H~~~~avPll~~~~~~~----~~~r~~~~~~~~l 142 (449)
T PF09852_consen 113 HPVAFAVPLLLWALYAL----ERRRWRLFILWAL 142 (449)
T ss_pred cHHHHHHHHHHHHHHHH----HhCcHHHHHHHHH
Confidence 56666766766666644 4466555554444
No 28
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=83.90 E-value=11 Score=42.27 Aligned_cols=119 Identities=19% Similarity=0.140 Sum_probs=64.1
Q ss_pred ccccCCCCcccCceecC--ccccchHHHHHHHHHHHHhhcCCCcccceeeeehhhHHH--HH-HHHHHHHHHHHhcCchH
Q 003973 71 WNWFDDRTWYPLGRVIG--GTVYPGLTLTAGTIWWLLNSLNIPLSVETVCVFTAPIFS--AF-ASWATYLLTKEVKGAGA 145 (782)
Q Consensus 71 ~nWFD~~sWYPlGR~vg--~T~YPgLm~ta~~i~~ll~~lg~~v~i~~vcv~lppvfs--~l-t~i~~yll~~e~~~~~a 145 (782)
.||||+.+||---...- .-+-=-+++.++++--=-+. ..-+-+.+-|++-|+.. -| +.-.+|.+.-++.-.+.
T Consensus 56 lnlfdp~~wgn~d~it~ei~RvvLcvqvfava~eLPr~Y--~l~~w~Si~vlllpVmi~gwlvs~~fvy~l~p~lnf~~S 133 (467)
T KOG4505|consen 56 LNLFDPNSWGNKDYITYEISRVVLCVQVFAVAMELPRAY--MLEHWRSIFVLLLPVMIIGWLVSFGFVYALIPNLNFLTS 133 (467)
T ss_pred hhhcCCccccCcchhhhhhhhhhHhHHHHHHHHhccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 79999999987621110 00000122222221000000 01145666778888653 33 66667777655533334
Q ss_pred HHHHHHHHHhhhhh---------hhhcc---------ccccchhHHHHHHHHHHHHHHHHHhhc
Q 003973 146 GLTAAALLAMVPSY---------ISRSV---------AGSYDNEAVAIFALIITFYLYIKTLNT 191 (782)
Q Consensus 146 GLlAA~~iAI~Pgy---------isRSv---------aG~yDnE~iaif~llltfylwikalkt 191 (782)
=++||++.+.=|-. ..|-| |-|==|++.|++++-+.+++...-.++
T Consensus 134 l~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~AESGcNDGMaipflflai~Ll~h~~~r 197 (467)
T KOG4505|consen 134 LLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLAAESGCNDGMAIPFLFLAIDLLRHKPRR 197 (467)
T ss_pred HHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCchh
Confidence 45677766654422 22222 224458999999999999998866653
No 29
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=83.44 E-value=1.3e+02 Score=37.47 Aligned_cols=77 Identities=17% Similarity=0.068 Sum_probs=49.0
Q ss_pred cceeeeehhhHHHHHHHHHHHHHHHHhc-Cc--hHHHHHHHHHHhhhhhhhhcc-ccccchhHHHHHHHHHHHHHHHHHh
Q 003973 114 VETVCVFTAPIFSAFASWATYLLTKEVK-GA--GAGLTAAALLAMVPSYISRSV-AGSYDNEAVAIFALIITFYLYIKTL 189 (782)
Q Consensus 114 i~~vcv~lppvfs~lt~i~~yll~~e~~-~~--~aGLlAA~~iAI~PgyisRSv-aG~yDnE~iaif~llltfylwikal 189 (782)
+...-.++--+=-+++++.+|++.|+.. ++ .+.+++|++.|.+--.+..+. .-| .-++.++.+.++..-|.+
T Consensus 88 ~~~~~~~~~~lk~~lag~~~~~~l~~~~~~~~~~~~~i~s~~Yafsg~~~~~~~~~~f----ld~~i~lPL~llgie~~~ 163 (843)
T PF09586_consen 88 MPYAILLLIILKIGLAGLFFYLYLRKFKKSRSDWAALIGSLLYAFSGYVIYYSFNIMF----LDAMILLPLLLLGIERLL 163 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHhhhHHH----HHHHHHHHHHHHHHHHHH
Confidence 3333444434445788899999999986 45 899999999988855554332 122 223444555566667788
Q ss_pred hcCCh
Q 003973 190 NTGSL 194 (782)
Q Consensus 190 ktgs~ 194 (782)
++++.
T Consensus 164 ~~~k~ 168 (843)
T PF09586_consen 164 KEKKW 168 (843)
T ss_pred hcCCc
Confidence 88764
No 30
>PF09913 DUF2142: Predicted membrane protein (DUF2142); InterPro: IPR018674 This family of conserved hypothetical proteins has no known function.
Probab=82.07 E-value=66 Score=36.08 Aligned_cols=106 Identities=19% Similarity=0.283 Sum_probs=67.8
Q ss_pred CCcccCceecCccccchHHH-HHHHHHHHHhhcCCCcccceeeeehhhHHHHH-HHHHHHHHHHHhcCchHHHHHHHHHH
Q 003973 77 RTWYPLGRVIGGTVYPGLTL-TAGTIWWLLNSLNIPLSVETVCVFTAPIFSAF-ASWATYLLTKEVKGAGAGLTAAALLA 154 (782)
Q Consensus 77 ~sWYPlGR~vg~T~YPgLm~-ta~~i~~ll~~lg~~v~i~~vcv~lppvfs~l-t~i~~yll~~e~~~~~aGLlAA~~iA 154 (782)
.++-+.+...+.. ||++.. -.++-.++.+.+|.++ ..+.++.=+++.+ .++.+|+..|-....+ ..+++++
T Consensus 82 ~~~~~~~~~~~~~-y~p~~Ylp~alGi~ig~ll~l~~---~~~~~l~Rl~nll~~~~l~~~Ai~~~p~~k---~l~~~i~ 154 (389)
T PF09913_consen 82 WSGSPFGNFSSTA-YPPLYYLPQALGIWIGRLLGLSV---LVMYYLGRLFNLLLYALLVYLAIKLAPRGK---WLLALIA 154 (389)
T ss_pred cccCccccccCcC-CCcHhhHHHHHHHHHHHHhCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHcchhH---HHHHHHH
Confidence 3444444433333 999985 4444466666666543 2345666677776 5555555555553222 3477888
Q ss_pred hhhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhc
Q 003973 155 MVPSYISRSVAGSYDNEAVAIFALIITFYLYIKTLNT 191 (782)
Q Consensus 155 I~PgyisRSvaG~yDnE~iaif~llltfylwikalkt 191 (782)
..|--++- ++++-++++.+.+..+.+.++++..++
T Consensus 155 l~Pm~~~~--~aS~s~D~~~~~~~~l~~a~~l~~~~~ 189 (389)
T PF09913_consen 155 LLPMTLFQ--AASVSYDGLIIALAFLFIALLLRLYRK 189 (389)
T ss_pred HHHHHHHH--HHhcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 99987765 678888888888888888888886444
No 31
>COG1271 CydA Cytochrome bd-type quinol oxidase, subunit 1 [Energy production and conversion]
Probab=79.34 E-value=54 Score=38.41 Aligned_cols=60 Identities=18% Similarity=0.379 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHH-HHHhccchh-HHHHHHH-------HHHHHHH-----H----HccCccchhhHHhHHHHHHHHHh
Q 003973 194 LFYATLNAIAYFY-MVCSWGGYT-FIINLIP-------MHVLLCI-----V----TGRYSSRLYIAYAPLVVLGTLLA 253 (782)
Q Consensus 194 ~~~a~lagl~y~y-mv~aWGGyv-Fi~nlI~-------l~~~vl~-----l----~gr~s~rlyvays~~yvlgtll~ 253 (782)
...|+.+|+...+ ...-|.+|. ++-|++. +.+|.+= + .+|.+++.+..-+....+||.++
T Consensus 63 Fa~GvvTGivm~fqfg~nW~~fs~~vG~V~g~PLa~E~l~AFFlEa~FLGi~lfgwdrv~~~~H~~~t~~VAiGt~~S 140 (457)
T COG1271 63 FAVGVVTGIVMEFQFGTNWPGFSEYVGDVFGAPLAIEALFAFFLEATFLGIFLFGWDRVSKKLHLLSTWLVAIGTNLS 140 (457)
T ss_pred HHHhhhhhhhhhhhhhcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhheeeeccccCchhHHHHHHHHHHHHHHH
Confidence 3466777877766 567899997 5555543 2222211 1 38889888888888888888765
No 32
>COG5650 Predicted integral membrane protein [Function unknown]
Probab=78.92 E-value=6.8 Score=46.05 Aligned_cols=179 Identities=20% Similarity=0.248 Sum_probs=104.8
Q ss_pred ccccchhHHHHHHHHHHhcCccccccccCCCCcccCceecCccccchHHHHHHHHHHHHhhcCCCcccceeeee--hhhH
Q 003973 47 IHEFDPYFNYRVTQFLTKNGIYDFWNWFDDRTWYPLGRVIGGTVYPGLTLTAGTIWWLLNSLNIPLSVETVCVF--TAPI 124 (782)
Q Consensus 47 IhEFDPwfNyR~T~yl~~~G~~~f~nWFD~~sWYPlGR~vg~T~YPgLm~ta~~i~~ll~~lg~~v~i~~vcv~--lppv 124 (782)
.|.+|||..|-.+|=...+-+. - ..+=|+.|--|-.-.||||.... ++| .+.++-.+ .+++
T Consensus 114 vh~~~P~~r~~ms~af~y~~yP-v-----~~~~y~~~~~v~~~~Y~~L~~ll----------~lP-~~~ef~~~f~V~AF 176 (536)
T COG5650 114 VHGFDPYVRYNMSKAFRYMHYP-V-----LGTPYQTGGYVIYFSYPGLSALL----------FLP-VLFEFNPFFKVLAF 176 (536)
T ss_pred ecCCCccchhhhhhhheeEeec-c-----ccCcccccceEEEEEecchhhhc----------cCc-cccccchhhhHHHH
Confidence 3999999988877643333221 1 12678888888778899985432 345 34444332 2344
Q ss_pred HHHHHHHHHHHHHH-HhcCchHHHHHHHHHHhhhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHH
Q 003973 125 FSAFASWATYLLTK-EVKGAGAGLTAAALLAMVPSYISRSVAGSYDNEAVAIFALIITFYLYIKTLNTGSLFYATLNAIA 203 (782)
Q Consensus 125 fs~lt~i~~yll~~-e~~~~~aGLlAA~~iAI~PgyisRSvaG~yDnE~iaif~llltfylwikalktgs~~~a~lagl~ 203 (782)
-.++..+.+....| ++++ -+.+.+++++..| ++.=.+++-+| .|++|+++.++.+ |..+..-|++.|++
T Consensus 177 ~~A~~~l~~i~~~r~gl~~--~~~~~valv~as~-~v~f~v~~~~D--tI~~ffla~a~v~-----r~rP~lAGvl~Gls 246 (536)
T COG5650 177 LLALIWLLVIYFIRKGLAG--SRVLDVALVAASP-LVGFAVFTVFD--TIWAFFLAAALVC-----RGRPKLAGVLIGLS 246 (536)
T ss_pred HHHHHHHHHHHHHHhcccc--cceeeeeeeeccc-eEEEEEecchh--HHHHHHHHHHHHh-----cCCchHHHHHHHHH
Confidence 45566666666664 4544 3456666777788 77667777666 7888888888877 54555555555554
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHHccCccchhhHHhHHHHHHHHHhhhcccccee
Q 003973 204 YFYMVCSWGGYTFIINLIPMHVLLCIVTGRYSSRLYIAYAPLVVLGTLLAALVPVVGFN 262 (782)
Q Consensus 204 y~ymv~aWGGyvFi~nlI~l~~~vl~l~gr~s~rlyvays~~yvlgtll~~~iP~vGf~ 262 (782)
-.+=- |-| |.+-.++..+...+..|-...+.... ++|.+..+.||+=..
T Consensus 247 ~a~K~--~P~-------Ivl~pll~~~~keyg~~~a~~f~~~a-a~t~lLvN~PfiI~~ 295 (536)
T COG5650 247 SAFKQ--IPL-------IVLPPLLYLIYKEYGLRPAIKFIATA-AITWLLVNLPFIILG 295 (536)
T ss_pred HHhhc--Cch-------hhHHHHHHHHHHhcCcchHHHHHHHH-HHHHHHHcCceEEec
Confidence 43322 111 22223334445566555555544333 345566677876443
No 33
>PRK15035 cytochrome bd-II oxidase subunit 1; Provisional
Probab=74.76 E-value=54 Score=38.93 Aligned_cols=78 Identities=12% Similarity=0.187 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHhhcCC-----------------hHHHHHHHHHHHH-HHHhccchh-HHHHHHHHH-------HHH--
Q 003973 176 FALIITFYLYIKTLNTGS-----------------LFYATLNAIAYFY-MVCSWGGYT-FIINLIPMH-------VLL-- 227 (782)
Q Consensus 176 f~llltfylwikalktgs-----------------~~~a~lagl~y~y-mv~aWGGyv-Fi~nlI~l~-------~~v-- 227 (782)
-+.++...+-.+.+|||+ ...|+.||+-.-+ +..-|.+|. |+=++++.- +|.
T Consensus 28 GL~~~lai~E~~~~rtg~~~y~~larFw~Klf~InFavGVvTGivmeFqFG~nWs~ys~~vGdvfG~pLa~E~l~AFFlE 107 (514)
T PRK15035 28 GLIFLLAIMETIYVVTGKTIYRDMTRFWGKLFGINFALGVATGLTMEFQFGTNWSFYSNYVGDIFGAPLAMEALMAFFLE 107 (514)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhcchHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344445555566777763 2345666665544 567899997 555544321 211
Q ss_pred -----HHH--HccCccchhhHHhHHHHHHHHHh
Q 003973 228 -----CIV--TGRYSSRLYIAYAPLVVLGTLLA 253 (782)
Q Consensus 228 -----l~l--~gr~s~rlyvays~~yvlgtll~ 253 (782)
+.+ -+|.+++.+..-+....+|+.++
T Consensus 108 stFlGl~lFGw~rl~~~~H~~~~~lVaiGt~lS 140 (514)
T PRK15035 108 STFVGLFFFGWQRLNKYQHLLVTWLVAFGSNLS 140 (514)
T ss_pred HHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHH
Confidence 111 37889888887777777777655
No 34
>PF01654 Bac_Ubq_Cox: Bacterial Cytochrome Ubiquinol Oxidase; InterPro: IPR002585 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. Subunit I binds a single b-haem, through ligands at His186 and Met393 (using P0ABJ9 from SWISSPROT numbering). In addition His19 is a ligand for the haem b found in subunit II (IPR003317 from INTERPRO).; GO: 0016020 membrane
Probab=74.74 E-value=1.4e+02 Score=34.78 Aligned_cols=80 Identities=15% Similarity=0.232 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHhhcCC-----------------hHHHHHHHHHHHH-HHHhccchh-HHHHHHHH-------HHHH
Q 003973 174 AIFALIITFYLYIKTLNTGS-----------------LFYATLNAIAYFY-MVCSWGGYT-FIINLIPM-------HVLL 227 (782)
Q Consensus 174 aif~llltfylwikalktgs-----------------~~~a~lagl~y~y-mv~aWGGyv-Fi~nlI~l-------~~~v 227 (782)
.|-+.++..++=.+++|+|+ ...|+.+|+..-+ +...|-.|. ++.|.+.. .+|+
T Consensus 20 tiGl~~~~~i~e~~~~rt~d~~y~~lar~w~k~~~i~fa~GvvtG~~~~f~~g~~wp~f~~~~g~vfg~pla~E~l~aFf 99 (436)
T PF01654_consen 20 TIGLALLLAILETLYYRTGDPRYDRLARFWGKLFAINFAVGVVTGTVMEFQFGTNWPRFSRFVGDVFGPPLAIEGLFAFF 99 (436)
T ss_pred HHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566667777763 3356677765553 567787776 33333221 1111
Q ss_pred -----HHH----HccCccchhhHHhHHHHHHHHHh
Q 003973 228 -----CIV----TGRYSSRLYIAYAPLVVLGTLLA 253 (782)
Q Consensus 228 -----l~l----~gr~s~rlyvays~~yvlgtll~ 253 (782)
+.+ -+|.++|.+...+..+.+|+.++
T Consensus 100 lE~~flgiy~fgW~rl~~~~H~~~~~~vaig~~~S 134 (436)
T PF01654_consen 100 LEATFLGIYLFGWDRLSPKVHLFIGWLVAIGAWLS 134 (436)
T ss_pred HHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHH
Confidence 111 38889998888777777666543
No 35
>PF02516 STT3: Oligosaccharyl transferase STT3 subunit; InterPro: IPR003674 N-linked glycosylation is a ubiquitous protein modification, and is essential for viability in eukaryotic cells. A lipid-linked core-oligosaccharide is assembled at the membrane of the endoplasmic reticulum and transferred to selected asparagine residues of nascent polypeptide chains by the oligosaccharyl transferase (OTase) complex []. This family consists of the oligsacharyl transferase STT3 subunit and related proteins. The STT3 subunit is part of the oligosccharyl transferase (OTase) complex of proteins and is required for its activity [].; GO: 0004576 oligosaccharyl transferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 3AAG_B 2ZAI_D 2ZAG_A 3RCE_A.
Probab=65.93 E-value=2.5e+02 Score=32.27 Aligned_cols=34 Identities=12% Similarity=0.094 Sum_probs=25.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003973 387 LSDASSFVVLYIVTSVYFSGVMVRLMLVFAPAAC 420 (782)
Q Consensus 387 ~~d~~~Flily~v~a~Yfa~~mvRL~l~laP~v~ 420 (782)
.++..++++.|.+++.+....+.|+.+++.|++.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~rf~~~~~p~~~ 364 (483)
T PF02516_consen 331 KRPILIFLLEWQPFGLYAYFFGFRFAIFAVPVGI 364 (483)
T ss_dssp T-SSGGGGHHHHHHHHHHHHH-GGGGGGGHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678999999999999999999955555444
No 36
>PRK15097 cytochrome d terminal oxidase subunit 1; Provisional
Probab=63.89 E-value=1.3e+02 Score=35.93 Aligned_cols=77 Identities=12% Similarity=0.213 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhhcCC-----------------hHHHHHHHHHHHH-HHHhccchh-HHHHHHHHH-------HHH---
Q 003973 177 ALIITFYLYIKTLNTGS-----------------LFYATLNAIAYFY-MVCSWGGYT-FIINLIPMH-------VLL--- 227 (782)
Q Consensus 177 ~llltfylwikalktgs-----------------~~~a~lagl~y~y-mv~aWGGyv-Fi~nlI~l~-------~~v--- 227 (782)
+.++...+=.+.+|||+ ...|+.||+..-+ +..-|.+|. |+=++++.- +|.
T Consensus 29 L~~llai~E~~~~rtg~~~y~~larFW~Klf~InFavGVvTGivmeFqFG~nWs~ys~~vGdifG~pLa~E~l~AFFlEs 108 (522)
T PRK15097 29 MAFLLAIMETVYVLSGKQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLES 108 (522)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhcchheeecccccHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33444444456677763 2344566665543 557788887 444443221 111
Q ss_pred ----HHH--HccCccchhhHHhHHHHHHHHHh
Q 003973 228 ----CIV--TGRYSSRLYIAYAPLVVLGTLLA 253 (782)
Q Consensus 228 ----l~l--~gr~s~rlyvays~~yvlgtll~ 253 (782)
+.+ -+|.++|.+..-+....+|+.++
T Consensus 109 tFlGl~~FGW~rl~~~~H~~~~~lVaiGt~lS 140 (522)
T PRK15097 109 TFVGLFFFGWDRLGKVQHMCVTWLVALGSNLS 140 (522)
T ss_pred HHHHHHHHhhhhcchHHHHHHHHHHHHHHHHH
Confidence 111 38888888887777777776554
No 37
>COG5427 Uncharacterized membrane protein [Function unknown]
Probab=63.42 E-value=9.7 Score=43.86 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=18.2
Q ss_pred CCCHHHHHHHHhhcCCCEEEE
Q 003973 621 SSPEKAAWEIFNSLDVKYVLV 641 (782)
Q Consensus 621 aS~E~~A~~Ilr~ldvdYVLV 641 (782)
+.||+++.|||+|.||+||.+
T Consensus 625 T~~~~K~~Ei~~KY~V~Yv~~ 645 (684)
T COG5427 625 TTDAAKRAEILEKYDVTYVWV 645 (684)
T ss_pred cCcHHHHHHHHHhcCceEEEE
Confidence 348999999999999999754
No 38
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=57.75 E-value=1.5e+02 Score=36.41 Aligned_cols=103 Identities=16% Similarity=0.136 Sum_probs=63.8
Q ss_pred chHHHHHHHHHHHHhhcCC-CcccceeeeehhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhhhhhhhccccccch
Q 003973 92 PGLTLTAGTIWWLLNSLNI-PLSVETVCVFTAPIFSAFASWATYLLTKEVKGAGAGLTAAALLAMVPSYISRSVAGSYDN 170 (782)
Q Consensus 92 PgLm~ta~~i~~ll~~lg~-~v~i~~vcv~lppvfs~lt~i~~yll~~e~~~~~aGLlAA~~iAI~PgyisRSvaG~yDn 170 (782)
+-+++++..+.-++-..-. +.++.++..++||+++....+..+.+ .-++++..++++.-.++.+ |+||-
T Consensus 308 ~l~~~~~l~i~~l~l~~iv~~~~~~~~~~l~p~a~~~~l~~~lv~~-------r~~i~~s~~~~i~~~~~~~---~~~~~ 377 (700)
T COG1480 308 LLLLYLSLAILTLSLLRIVGYFNYSASGLLVPPALGPMLLILLVFL-------RIAIFSSSMIAIALLYLFG---GSYNS 377 (700)
T ss_pred HHHHHHHHHHHHHHHHhccccccchhhhhccchHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHhc---cchhH
Confidence 4566666666655543222 35677888888888887655544433 5678889999999999988 99887
Q ss_pred hHHHHHHHH--HHHHHHHHHhhcCChHHHHHHHHHHHHH
Q 003973 171 EAVAIFALI--ITFYLYIKTLNTGSLFYATLNAIAYFYM 207 (782)
Q Consensus 171 E~iaif~ll--ltfylwikalktgs~~~a~lagl~y~ym 207 (782)
+-.-+.++. -+++++-+.-++.++ +-+|++++.|
T Consensus 378 ~~~~~~l~s~~~~~~~l~~~s~rs~i---~~~g~~~~~~ 413 (700)
T COG1480 378 EIALIALLSSFSALVLLRKMSRRSDI---LKSGLFLALM 413 (700)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHH---HHHHHHHHHH
Confidence 654444433 344544443333333 3345555544
No 39
>COG4346 Predicted membrane-bound dolichyl-phosphate-mannose-protein mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=56.80 E-value=49 Score=37.45 Aligned_cols=43 Identities=26% Similarity=0.249 Sum_probs=36.2
Q ss_pred eeeehhh-HHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHhhhhh
Q 003973 117 VCVFTAP-IFSAFASWATYLLTKEVK-GAGAGLTAAALLAMVPSY 159 (782)
Q Consensus 117 vcv~lpp-vfs~lt~i~~yll~~e~~-~~~aGLlAA~~iAI~Pgy 159 (782)
.|-=+|- ++++|+.+..|+.++.+. +.-||++||+++|.=|-.
T Consensus 155 l~WRiPsiIe~~liliiv~~~~~ki~~~~la~~~aA~~~alDp~l 199 (438)
T COG4346 155 LYWRIPSIIEGALILIIVYFVAYKIARSPLAGLIAALLAALDPLL 199 (438)
T ss_pred ceeeccHHHhhhHHHHHHHHHHHHHhcCchHHHHHHHHHhhCcHH
Confidence 3545555 679999999999999985 588999999999998866
No 40
>PF11345 DUF3147: Protein of unknown function (DUF3147); InterPro: IPR021493 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=49.06 E-value=1.3e+02 Score=28.37 Aligned_cols=38 Identities=18% Similarity=0.317 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHhhhhhhh
Q 003973 124 IFSAFASWATYLLTKEVKGA-GAGLTAAALLAMVPSYIS 161 (782)
Q Consensus 124 vfs~lt~i~~yll~~e~~~~-~aGLlAA~~iAI~Pgyis 161 (782)
++||+++.+++.+.+.+.++ -+|++||+=...+++-+.
T Consensus 6 ~~GG~av~~~~ii~~~~~~k~~GGifAA~PaV~lasl~~ 44 (108)
T PF11345_consen 6 LLGGLAVVAAYIISRKLPPKSFGGIFAAFPAVFLASLLI 44 (108)
T ss_pred eeccHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999876 799999876555555533
No 41
>PF09971 DUF2206: Predicted membrane protein (DUF2206); InterPro: IPR018701 This family of predicted membrane proteins from archaea has no known function.
Probab=48.89 E-value=4.6e+02 Score=29.97 Aligned_cols=65 Identities=12% Similarity=0.177 Sum_probs=39.7
Q ss_pred chhhHHhHHHHHHHHHhhhcccc--ceeeccchHH----HHHHHHHHHHHHHHHHHHHHhhcChhhHHHHH
Q 003973 237 RLYIAYAPLVVLGTLLAALVPVV--GFNAVMTSEH----FASFLVFIILHVVALVYYIKGILSPKMFKVAV 301 (782)
Q Consensus 237 rlyvays~~yvlgtll~~~iP~v--Gf~p~~s~e~----~~al~vf~ll~~~~~~~~l~~~l~~~~~~~~~ 301 (782)
+.|.+.+..+.+-.++.+.+|+. +.++-|--.. +|+..+.|.+.+...+.-++++..++..+...
T Consensus 148 ~~Yl~fs~~~~iiLia~i~lP~fa~~mn~~RLy~itli~LAPf~iiG~~~~~~~i~k~~~~~~~~~~~~~~ 218 (367)
T PF09971_consen 148 IEYLAFSLVSLIILIASIVLPFFASVMNPTRLYQITLIFLAPFFIIGGITLFKLINKLFRRIWKPINKNSF 218 (367)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchHH
Confidence 68899888888888888889977 5666664433 45555566555555554444443333334433
No 42
>PRK02237 hypothetical protein; Provisional
Probab=47.75 E-value=81 Score=30.06 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHc-cCccchhhHHhHHHHHHHHHhh
Q 003973 179 IITFYLYIKTLNTGSLFYATLNAIAYFYMVCSWGGYTFIINLIPMHVLLCIVTG-RYSSRLYIAYAPLVVLGTLLAA 254 (782)
Q Consensus 179 lltfylwikalktgs~~~a~lagl~y~ymv~aWGGyvFi~nlI~l~~~vl~l~g-r~s~rlyvays~~yvlgtll~~ 254 (782)
...+|+|+| +.+|..|.+.+++++..+. .++.+.. --..|.|-+|--.|++.+++=.
T Consensus 20 cyl~w~wlR--~~ks~~~~~pg~~~L~lfg-----------------~llTl~p~~~~GRvYAAYGGvyI~~Sl~W~ 77 (109)
T PRK02237 20 CYLPWLWLR--EGKSAWWLLPGALSLALFG-----------------WLLTLQPDAAFGRVYAAYGGVYVAGSLLWL 77 (109)
T ss_pred HHHHHHHHH--cCCchhHHHHHHHHHHHHH-----------------HHHhcCCchhhhhHHHHhhhHHHHHHHHHH
Confidence 345677777 4568889998888765543 2333222 2257899999999988876543
No 43
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=44.01 E-value=7.3e+02 Score=30.85 Aligned_cols=104 Identities=16% Similarity=0.102 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhhhhhhhhccccccchhHHHHHHHHHHHHHHHHH-hhc-CChHHHHHHHHHHHHHHHhcc-chhHHHHHH
Q 003973 145 AGLTAAALLAMVPSYISRSVAGSYDNEAVAIFALIITFYLYIKT-LNT-GSLFYATLNAIAYFYMVCSWG-GYTFIINLI 221 (782)
Q Consensus 145 aGLlAA~~iAI~PgyisRSvaG~yDnE~iaif~llltfylwika-lkt-gs~~~a~lagl~y~ymv~aWG-GyvFi~nlI 221 (782)
-=++.=+.+++.--.++|++. .++--.+..+.....--..+.. +.. .+++-..+-+++..++.-.|- ++..+.+++
T Consensus 307 ~~l~~~~~l~i~~l~l~~iv~-~~~~~~~~~l~p~a~~~~l~~~lv~~r~~i~~s~~~~i~~~~~~~~~~~~~~~~~~l~ 385 (700)
T COG1480 307 SLLLLYLSLAILTLSLLRIVG-YFNYSASGLLVPPALGPMLLILLVFLRIAIFSSSMIAIALLYLFGGSYNSEIALIALL 385 (700)
T ss_pred hHHHHHHHHHHHHHHHHhccc-cccchhhhhccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 445555566666666788876 3332333332222221111111 122 223333444444444433333 333333332
Q ss_pred HHHHHHHHHHccCccchhhHHhHHHHHHH
Q 003973 222 PMHVLLCIVTGRYSSRLYIAYAPLVVLGT 250 (782)
Q Consensus 222 ~l~~~vl~l~gr~s~rlyvays~~yvlgt 250 (782)
-- .-.+.++++.+.|.-+.++..++..+
T Consensus 386 s~-~~~~~~l~~~s~rs~i~~~g~~~~~~ 413 (700)
T COG1480 386 SS-FSALVLLRKMSRRSDILKSGLFLALM 413 (700)
T ss_pred HH-HHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 22 23456678888877777766665544
No 44
>COG3463 Predicted membrane protein [Function unknown]
Probab=37.54 E-value=74 Score=37.01 Aligned_cols=67 Identities=24% Similarity=0.380 Sum_probs=51.7
Q ss_pred eeehhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHhhhhhhhhccccccch--hHHHHHHHHHHHHHHHH
Q 003973 118 CVFTAPIFSAFASWATYLLTKEVK-GAGAGLTAAALLAMVPSYISRSVAGSYDN--EAVAIFALIITFYLYIK 187 (782)
Q Consensus 118 cv~lppvfs~lt~i~~yll~~e~~-~~~aGLlAA~~iAI~PgyisRSvaG~yDn--E~iaif~llltfylwik 187 (782)
-..+-.++-+++++++|+++||.- |+.-|++=+.+-...|.-.+= -+||= +++++.+.++.+|+|.|
T Consensus 90 Lll~Q~i~ials~~p~y~lA~eil~~E~~al~isilYll~p~i~gi---~~FDFH~m~~avp~~~~a~~f~~r 159 (458)
T COG3463 90 LLLIQAIAIALSSLPIYLLAKEILNGEKEALAISILYLLNPYIEGI---NLFDFHPMAFAVPLFLLAYYFLKR 159 (458)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhcccHHHHHHHHHHHhchhccCc---hhhhcchHHHHHHHHHHHHHHHHh
Confidence 445668888999999999999985 588888888888888866442 35665 56677788888888844
No 45
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=34.34 E-value=1.5e+02 Score=31.09 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 003973 419 ACIMSGIALSQAFDVFTRS 437 (782)
Q Consensus 419 v~ilagi~is~l~~~~~~~ 437 (782)
+.+|.|+.+=+.-.+|.+.
T Consensus 141 ~~~LvGVLvLQaG~~YAe~ 159 (196)
T PF08229_consen 141 ALVLVGVLVLQAGQWYAER 159 (196)
T ss_pred HHHHHHHHHHHhhHHHHhh
Confidence 4456677766666666543
No 46
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=32.15 E-value=6.7e+02 Score=29.15 Aligned_cols=80 Identities=20% Similarity=0.300 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHhhcCCCcccceeeeehhhHHHHHHHHHHHHHHHHh---c--CchHHHHHHHHHHhhhhhhhhccccc
Q 003973 93 GLTLTAGTIWWLLNSLNIPLSVETVCVFTAPIFSAFASWATYLLTKEV---K--GAGAGLTAAALLAMVPSYISRSVAGS 167 (782)
Q Consensus 93 gLm~ta~~i~~ll~~lg~~v~i~~vcv~lppvfs~lt~i~~yll~~e~---~--~~~aGLlAA~~iAI~PgyisRSvaG~ 167 (782)
||-.|.+.++.+...+.-.+. .=.+.+.+|++++|..+--- + +|..|-+.|..+|+.=.++.... |.
T Consensus 18 glal~lvsl~~~~~~~~~~~~-------~~~~WavlTVvvvfe~tvGatl~KG~nR~lGTl~aG~La~~~~~la~~~-g~ 89 (406)
T PF11744_consen 18 GLALTLVSLLYFVGPLYDGFG-------QNAMWAVLTVVVVFEPTVGATLSKGLNRGLGTLLAGILAFGVSWLASLS-GD 89 (406)
T ss_pred HHHHHHHHHHHHhhhhhhhhh-------hcchHHHhhhHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Cc
Confidence 666666666555554311111 12556677777776554321 1 46677777777788888877433 44
Q ss_pred cchhHHHHHHHHHH
Q 003973 168 YDNEAVAIFALIIT 181 (782)
Q Consensus 168 yDnE~iaif~lllt 181 (782)
+-|.+.+.+.++.
T Consensus 90 -~~~~~~i~~~vFi 102 (406)
T PF11744_consen 90 -PGEPIVIGISVFI 102 (406)
T ss_pred -cchhHHHHHHHHH
Confidence 3444444443333
No 47
>KOG2647 consensus Predicted Dolichyl-phosphate-mannose-protein mannosyltransferase [General function prediction only]
Probab=31.93 E-value=81 Score=36.55 Aligned_cols=110 Identities=19% Similarity=0.235 Sum_probs=74.5
Q ss_pred ccchHHHHHHHHHHHHhhcCCCccc---ce-eeeehhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHhhhhhhhhcc
Q 003973 90 VYPGLTLTAGTIWWLLNSLNIPLSV---ET-VCVFTAPIFSAFASWATYLLTKEVK-GAGAGLTAAALLAMVPSYISRSV 164 (782)
Q Consensus 90 ~YPgLm~ta~~i~~ll~~lg~~v~i---~~-vcv~lppvfs~lt~i~~yll~~e~~-~~~aGLlAA~~iAI~PgyisRSv 164 (782)
.+|++..+.-.+-..++++..-.+. .. +.|+.--++..+++.+.|.+++.+. +.+....|++++...|+-|.=|.
T Consensus 96 F~pl~P~~v~~~~~~~~~~~~~l~~~~~~~i~~~~vn~~~f~la~~~Lyql~~~~~~~~k~s~~a~liFcfnPAsIF~ts 175 (444)
T KOG2647|consen 96 FFPLFPFVVRLVTEVLRPIEPVLSLRSILLISAVLVNIFFFMLAAVALYQLTRIILHDPKISFYAALLFCFNPASIFLTA 175 (444)
T ss_pred hccccHHHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHhhhhheeEecchHhhhhH
Confidence 3566665554444455543321111 11 2334444556789999999999984 67999999999999999988776
Q ss_pred ccccchhHHHHHHHHHHHHHHHHH-hhcCChHHHHHHHH
Q 003973 165 AGSYDNEAVAIFALIITFYLYIKT-LNTGSLFYATLNAI 202 (782)
Q Consensus 165 aG~yDnE~iaif~llltfylwika-lktgs~~~a~lagl 202 (782)
+= .|+.-.++.+..+++..+. --+|.+.++..+++
T Consensus 176 ~Y---SEsLfa~~s~~Gi~~~~~~~~~~~~~~~~l~~~~ 211 (444)
T KOG2647|consen 176 GY---SESLFALFSFLGILFLEKGRQFTGTLLFSLATLV 211 (444)
T ss_pred Hh---hHHHHHHHHHHHHHHHhcCCccceehHHHHHHHH
Confidence 63 4888888888888888877 34567777655443
No 48
>PF14264 Glucos_trans_II: Glucosyl transferase GtrII
Probab=31.39 E-value=7.1e+02 Score=27.02 Aligned_cols=91 Identities=16% Similarity=0.296 Sum_probs=54.3
Q ss_pred CcccCceecCccccchHHHHHHHHHHHHhhcCCCcccceeeeehhhHHHHH-HHHHHHHHHHHhc--CchHHHHHHHHHH
Q 003973 78 TWYPLGRVIGGTVYPGLTLTAGTIWWLLNSLNIPLSVETVCVFTAPIFSAF-ASWATYLLTKEVK--GAGAGLTAAALLA 154 (782)
Q Consensus 78 sWYPlGR~vg~T~YPgLm~ta~~i~~ll~~lg~~v~i~~vcv~lppvfs~l-t~i~~yll~~e~~--~~~aGLlAA~~iA 154 (782)
.|.=.||+. +..+++++ +|. +..|+ ..+|-+++.+ -++..+.++|-+. ++....+.++++.
T Consensus 24 ~w~~~GR~~-----------~~~~~~~l--~~~--~~~~~-~pl~~iLs~~~la~s~~~~~~~~~~~~~~~~~l~~~~~~ 87 (319)
T PF14264_consen 24 GWISSGRPL-----------LDLLMKLL--FGT--GNYDL-PPLPQILSILFLALSAVLLVRLFDIKSSFISVLFSLLFI 87 (319)
T ss_pred cchhcCchH-----------HHHHHHHH--hcc--CCCch-hHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 566668875 34456665 232 22233 3445555554 5566666666663 3456778888899
Q ss_pred hhhhhhhhccccccchh--HHHHHHHHHHHHHH
Q 003973 155 MVPSYISRSVAGSYDNE--AVAIFALIITFYLY 185 (782)
Q Consensus 155 I~PgyisRSvaG~yDnE--~iaif~llltfylw 185 (782)
..|..++=-.- .||.- ++++++..+.+++.
T Consensus 88 ~~P~~~~~lsy-~~~s~~~~ls~~l~~la~~~~ 119 (319)
T PF14264_consen 88 SSPFFLENLSY-RFDSLPMALSLLLAVLAFYFL 119 (319)
T ss_pred HhHHHHHHHHH-HHccHHHHHHHHHHHHHHHHH
Confidence 99988543211 23444 66777777777777
No 49
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=31.28 E-value=4.1e+02 Score=30.02 Aligned_cols=107 Identities=17% Similarity=0.120 Sum_probs=57.5
Q ss_pred ehhhHHHHHHHHHHHHHHHHh-------cCchHHHHHHHHHHhhhhh-----------hhhccccccchhHHHHHHHHHH
Q 003973 120 FTAPIFSAFASWATYLLTKEV-------KGAGAGLTAAALLAMVPSY-----------ISRSVAGSYDNEAVAIFALIIT 181 (782)
Q Consensus 120 ~lppvfs~lt~i~~yll~~e~-------~~~~aGLlAA~~iAI~Pgy-----------isRSvaG~yDnE~iaif~lllt 181 (782)
.++|.++++.++..-...++. .....|++.++.++..-+. .+|+..+.+| =.+|+++-...
T Consensus 144 lIaPlmgPi~a~a~g~~~~d~~L~~rsl~~l~~g~~~ai~~~~~~~~~~~~~~~~~ei~~r~~p~~~~-l~vAl~aG~AG 222 (325)
T TIGR00341 144 IIAPLLGPIHGFAVNLSVGDVKLAFRSAKNLLFDLFLVIVFSTIFAMMIGLVQLTPQILSRTEVSPVS-EILAVLAGIAG 222 (325)
T ss_pred HHHHhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHhcCCCHHH-HHHHHHHHHHH
Confidence 567888888777766554442 2233555555544444444 4677777664 56777777766
Q ss_pred HHHHHHHhhcCChH----------HHHHHH--HHHHHHHHhccch-hHHHHHHHHHHHHH
Q 003973 182 FYLYIKTLNTGSLF----------YATLNA--IAYFYMVCSWGGY-TFIINLIPMHVLLC 228 (782)
Q Consensus 182 fylwikalktgs~~----------~a~lag--l~y~ymv~aWGGy-vFi~nlI~l~~~vl 228 (782)
.+-..+. +++++. =+..+| ++++..-.+||.. .|.+|++.+-....
T Consensus 223 alsl~~~-~s~aLvGVaIAvaLvPPa~~~Gi~la~g~~~~a~ga~~L~~~Nl~~I~la~~ 281 (325)
T TIGR00341 223 ILSLSSG-ILESLAGVAISASLLPPAVATGILLVISPLPLAVKSLILTLINVAGLMAGSL 281 (325)
T ss_pred HHHHhhc-cccchHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666654 232211 112222 2233334455543 36777766655433
No 50
>COG5542 Predicted integral membrane protein [Function unknown]
Probab=29.78 E-value=1.8e+02 Score=33.71 Aligned_cols=157 Identities=21% Similarity=0.185 Sum_probs=91.9
Q ss_pred hhhchhhhhhhhhhhHHHHHHHH------HHHHHHHHhhcccc-ccccccc--ccchhHHHHHHHHHHh----cCccccc
Q 003973 5 AKAGEATLRHAFGNVLSFFILLL------IGVLAFSIRLFSVI-KYESVIH--EFDPYFNYRVTQFLTK----NGIYDFW 71 (782)
Q Consensus 5 ~~~~~~~~~~~~~~ll~~~iL~l------i~~~af~iRl~sv~-~y~~iIh--EFDPwfNyR~T~yl~~----~G~~~f~ 71 (782)
.|.|+....-..++++.+..+++ ....+..+|..-+. +.++.+. -+-||+-++++.+..- +|+.
T Consensus 17 ~~~~~~~~~f~~stlL~i~~~~~~~y~~i~~~a~ll~~~~~~~~~~~s~~~~~fl~~w~af~~~~~~f~~~~k~~~~--- 93 (420)
T COG5542 17 LKKGPPIIKFDLSTLLLINSLCISFYIVISIVAALLLRLICSSTENRSVIYAPFLVHWYAFIALNGGFVRVLKSHFA--- 93 (420)
T ss_pred hccccceeeecccchhHHHHHHHHHHHHHHHHHHHhhhhccccccCcchhhhHHHHHHHHHHHhhhhhhhhhhcccc---
Confidence 45566665555566555544444 33457778876432 2666663 3668999998876533 2221
Q ss_pred cccCCCCcccCceecCccccchHHHHHHHHHHHHhhcCCCcccceeeeehhhHHHHHHHHHHHHHHHHhcCc-hHHHHHH
Q 003973 72 NWFDDRTWYPLGRVIGGTVYPGLTLTAGTIWWLLNSLNIPLSVETVCVFTAPIFSAFASWATYLLTKEVKGA-GAGLTAA 150 (782)
Q Consensus 72 nWFD~~sWYPlGR~vg~T~YPgLm~ta~~i~~ll~~lg~~v~i~~vcv~lppvfs~lt~i~~yll~~e~~~~-~aGLlAA 150 (782)
| .+|.+......+=.++-. .-....-++..-+...+++-.+|.++|...+. ..+-+|-
T Consensus 94 ---~--------------~~p~~~y~i~ii~~L~~~----~~~~l~~~l~s~~~~~~~ay~lY~~tk~~y~~~~~a~fa~ 152 (420)
T COG5542 94 ---D--------------YFPLYLYWIRIINKLLSS----LYFILAIKLFSNIADFVAAYFLYKITKLRYGLGSMARFAT 152 (420)
T ss_pred ---c--------------cCchHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhhheE
Confidence 1 134444444333333321 00111122333455667889999999998653 5555555
Q ss_pred HHHHhhhhhhhhccccccchhHHHHHHHHHHHHHHH
Q 003973 151 ALLAMVPSYISRSVAGSYDNEAVAIFALIITFYLYI 186 (782)
Q Consensus 151 ~~iAI~PgyisRSvaG~yDnE~iaif~llltfylwi 186 (782)
.+....|+-+.=|+. +=-.|++-.++..+..|++.
T Consensus 153 i~~~~~P~~i~~s~i-w~~teSlf~ll~~l~iyf~~ 187 (420)
T COG5542 153 ILVILSPSVIYNSAI-WGQTESLFTLLSILAIYFFS 187 (420)
T ss_pred EEEEeccHHHhhhhH-HhccchHHHHHHHHHHHHHH
Confidence 566666877766554 33888999998888888874
No 51
>COG4485 Predicted membrane protein [Function unknown]
Probab=29.52 E-value=7.6e+02 Score=30.91 Aligned_cols=139 Identities=18% Similarity=0.266 Sum_probs=0.0
Q ss_pred cccchhH--------HHHH-HHHHHHHHHHHHhhcCC------hHHHHHHHHHHHHHHHhccc------------hhHHH
Q 003973 166 GSYDNEA--------VAIF-ALIITFYLYIKTLNTGS------LFYATLNAIAYFYMVCSWGG------------YTFII 218 (782)
Q Consensus 166 G~yDnE~--------iaif-~llltfylwikalktgs------~~~a~lagl~y~ymv~aWGG------------yvFi~ 218 (782)
|.||++- +.|+ +++..++|.+|+.|-.. +.+=..++...=|.-+.|.| |+|-+
T Consensus 281 g~~Dtt~F~a~pmiyVgi~P~~l~v~~f~~ksir~~vk~lfa~l~~f~iisfy~q~ldl~wqGmhsPnmflhRya~ifs~ 360 (858)
T COG4485 281 GPYDTTKFNAIPMIYVGIFPLALIVLLFTLKSIRFRVKRLFAGLTAFFIISFYSQYLDLFWQGMHSPNMFLHRYAYIFSL 360 (858)
T ss_pred CcccceeeccccceeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHccCccchhhHHhHHHHHHHHHhhhccccceeeccchHHHHHHHHHHHHHHHHHHHHHHhhcChhhHH
Q 003973 219 NLIPMHVLLCIVTGRYSSRLYIAYAPLVVLGTLLAALVPVVGFNAVMTSEHFASFLVFIILHVVALVYYIKGILSPKMFK 298 (782)
Q Consensus 219 nlI~l~~~vl~l~gr~s~rlyvays~~yvlgtll~~~iP~vGf~p~~s~e~~~al~vf~ll~~~~~~~~l~~~l~~~~~~ 298 (782)
-++.+-+..+.=+..- .+-+.--+++.++.+.+. +-.-+-.|+...-+.--+.+|.++.......+.++..+-.-+-
T Consensus 361 ~i~~~a~e~LsrLsEl-k~~~ll~~~~vvil~~L~--i~~~~~y~~~~~~~iiL~l~l~~iy~l~l~~~~kk~i~~~v~~ 437 (858)
T COG4485 361 LISLLAAETLSRLSEL-KKKYLLRTIFVVILGFLY--ILLSPHYPFLPIVGIILLLLLLVIYKLSLWAFKKKTISILVFI 437 (858)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--HHHccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 003973 299 VAVTLVVSV 307 (782)
Q Consensus 299 ~~~~~~~~~ 307 (782)
.....++++
T Consensus 438 iiI~~f~~v 446 (858)
T COG4485 438 IIILQFVLV 446 (858)
T ss_pred HHHHHHHHH
No 52
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=29.35 E-value=1.3e+03 Score=29.41 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=13.9
Q ss_pred ccchhhHHhHHHHHHHHHh
Q 003973 235 SSRLYIAYAPLVVLGTLLA 253 (782)
Q Consensus 235 s~rlyvays~~yvlgtll~ 253 (782)
.+|+++...++|++..++.
T Consensus 33 keRl~Ls~~~v~Ll~Giil 51 (810)
T TIGR00844 33 KEKLYIGESMVASIFGLIV 51 (810)
T ss_pred HhhcCCcHHHHHHHHHHHh
Confidence 3478889888887766554
No 53
>KOG2515 consensus Mannosyltransferase [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.34 E-value=1.1e+03 Score=28.39 Aligned_cols=43 Identities=23% Similarity=0.508 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003973 392 SFVVLYIVTSVYF--SGVMVRLMLVFAPAACIMSGIALSQAFDVF 434 (782)
Q Consensus 392 ~Flily~v~a~Yf--a~~mvRL~l~laP~v~ilagi~is~l~~~~ 434 (782)
++.-.|.=+++++ .....|++.=.=|..|+.|++++..+.+.+
T Consensus 304 ~isp~yiWl~iF~~QPHKEERFLyPIYPlI~l~aaiald~~~~lf 348 (568)
T KOG2515|consen 304 VISPMYIWLAIFFIQPHKEERFLYPIYPLICLSAAIALDAVLRLF 348 (568)
T ss_pred ehhHHHHHHHHHhcCccchhhhhccchHHHHHHHHHHHHHHHHHH
Confidence 4444555556666 568999999999999999999999887764
No 54
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=27.90 E-value=4.6e+02 Score=31.16 Aligned_cols=38 Identities=21% Similarity=0.373 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Q 003973 194 LFYATLNAIAYFYMVCSWGGYTFIINLIPMHVLLCIVT 231 (782)
Q Consensus 194 ~~~a~lagl~y~ymv~aWGGyvFi~nlI~l~~~vl~l~ 231 (782)
|.-..+.+++|-.+...||+|.|++-.+|..++...+.
T Consensus 414 w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~ 451 (485)
T KOG0569|consen 414 WLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLY 451 (485)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHH
Confidence 55567888999999999999999999999988776664
No 55
>PF12821 DUF3815: Protein of unknown function (DUF3815); InterPro: IPR024528 This domain is found in uncharacterised predicted membrane proteins.
Probab=27.34 E-value=1.5e+02 Score=28.41 Aligned_cols=52 Identities=17% Similarity=0.336 Sum_probs=40.3
Q ss_pred ehhhHHHHH-HHHHHHHHHHHhcCchHHHHHHHHHHhhhhh-hhhccccccchh
Q 003973 120 FTAPIFSAF-ASWATYLLTKEVKGAGAGLTAAALLAMVPSY-ISRSVAGSYDNE 171 (782)
Q Consensus 120 ~lppvfs~l-t~i~~yll~~e~~~~~aGLlAA~~iAI~Pgy-isRSvaG~yDnE 171 (782)
.++.+++++ ..+..-.++|..+.+...++-..++-.+||. ..|++.+..++|
T Consensus 49 ~~a~f~aa~~vg~~~~~~ar~~~~P~~v~~vpgiipLVPG~~~y~~~~~~~~~~ 102 (130)
T PF12821_consen 49 FVATFVAAFVVGLLAELFARRLKAPATVFIVPGIIPLVPGSLAYRGMYSLVSGN 102 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCchHHhhccchheeCCcHHHHHHHHHHHHhh
Confidence 445566665 5566677778877777788888899999998 889999998877
No 56
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=27.31 E-value=1.3e+03 Score=28.92 Aligned_cols=22 Identities=14% Similarity=0.454 Sum_probs=15.8
Q ss_pred CCCCchHHHHHHHHHHHHHHHH
Q 003973 386 PLSDASSFVVLYIVTSVYFSGV 407 (782)
Q Consensus 386 ~~~d~~~Flily~v~a~Yfa~~ 407 (782)
|..-.--|++-+.++++|..+.
T Consensus 238 K~g~~~g~~l~~~il~~y~~~~ 259 (764)
T TIGR02865 238 KIGTGIGYLVGFLILAFYTQGS 259 (764)
T ss_pred cceeeHHHHHHHHHHHHHhccc
Confidence 4445567888999999998543
No 57
>PRK01061 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=25.94 E-value=6.4e+02 Score=27.44 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=14.2
Q ss_pred HHHHHHccCccchhhHHhHHH
Q 003973 226 LLCIVTGRYSSRLYIAYAPLV 246 (782)
Q Consensus 226 ~vl~l~gr~s~rlyvays~~y 246 (782)
++.+++.++.+.+|.+--+|-
T Consensus 106 ~vem~L~a~~p~Ly~aLGifL 126 (244)
T PRK01061 106 ILELLLEKVSRNLYLSLGIFL 126 (244)
T ss_pred HHHHHHHHHhHHHHHHHhcch
Confidence 334448999999887754443
No 58
>PF10131 PTPS_related: 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; InterPro: IPR018776 This entry is found in various bacterial and archaeal hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. Its function has not yet been established, though it shows similarity to 6-pyruvoyl-tetrahydropterin synthase.
Probab=24.48 E-value=1.4e+03 Score=28.06 Aligned_cols=54 Identities=26% Similarity=0.426 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH-----HHHhccchh---HHHHHHHHHHHH
Q 003973 172 AVAIFALIITFYLYIKTLNTGSLFYATLNAIAYFY-----MVCSWGGYT---FIINLIPMHVLL 227 (782)
Q Consensus 172 ~iaif~llltfylwikalktgs~~~a~lagl~y~y-----mv~aWGGyv---Fi~nlI~l~~~v 227 (782)
.++.++.-+..|+|.|.++. -..|+++|+.|.. ...-|.|-. ....++|+....
T Consensus 31 ~L~~~l~~~~~Y~~~R~~~~--~~~A~l~aiLyl~~py~l~~~y~rgni~e~lA~~llPlvll~ 92 (616)
T PF10131_consen 31 FLAFFLGGLGMYFLGRRLGR--RKAAILAAILYLFSPYHLRNIYWRGNIPETLAFALLPLVLLF 92 (616)
T ss_pred HHHHHHHHHHHHHHHHHhcc--hhHHHHHHHHHHHhHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 34566667778888888776 4566666666533 236666653 335677775533
No 59
>PRK09776 putative diguanylate cyclase; Provisional
Probab=23.48 E-value=1.3e+03 Score=29.16 Aligned_cols=18 Identities=11% Similarity=0.235 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 003973 275 VFIILHVVALVYYIKGIL 292 (782)
Q Consensus 275 vf~ll~~~~~~~~l~~~l 292 (782)
+..+++++.....+++..
T Consensus 76 ~~~~~~~~~~~~ll~~~~ 93 (1092)
T PRK09776 76 TINLVEAVVGAVLLRKLL 93 (1092)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 334444444444444443
No 60
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=23.45 E-value=3.3e+02 Score=24.60 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=26.8
Q ss_pred HHHHHHHhhhhhhhhccccccchhH--HHHHHHHHHHHHHHHHhhcCC--hHHHHHHHHHHHH
Q 003973 148 TAAALLAMVPSYISRSVAGSYDNEA--VAIFALIITFYLYIKTLNTGS--LFYATLNAIAYFY 206 (782)
Q Consensus 148 lAA~~iAI~PgyisRSvaG~yDnE~--iaif~llltfylwikalktgs--~~~a~lagl~y~y 206 (782)
+.|.+.-+.-....+...|+-+... .++....+.|+++.+|+|+-+ ..|++.+|+....
T Consensus 7 ~~a~~~ev~~~~~lK~s~g~~~~~~~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~ 69 (93)
T PF00893_consen 7 LLAILFEVVGTIALKASHGFTQLIPTILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVG 69 (93)
T ss_dssp HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 3344444444444555555444433 334456789999999999854 6677777775543
No 61
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=21.95 E-value=1.7e+03 Score=28.34 Aligned_cols=56 Identities=18% Similarity=0.203 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHh-cC---chHHHHHHHHHHhhhhh---hhh----------------ccccccchhHHHHHHHHHHHHH
Q 003973 128 FASWATYLLTKEV-KG---AGAGLTAAALLAMVPSY---ISR----------------SVAGSYDNEAVAIFALIITFYL 184 (782)
Q Consensus 128 lt~i~~yll~~e~-~~---~~aGLlAA~~iAI~Pgy---isR----------------SvaG~yDnE~iaif~llltfyl 184 (782)
+|.+++.+++.-+ -+ ..|-|++|++.+.=|.- +.| +-+|. |+++|+.+..+.+++
T Consensus 112 lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPVLAssV~kg~~~~rvP~rLR~lL~~ESGl--NDGlAfpfv~LaL~l 189 (810)
T TIGR00844 112 SGWLVIALFVWILVPGLNFPASLLMGACITATDPVLAQSVVSGTFAQKVPGHLRNLLSCESGC--NDGLAFPFVFLSMDL 189 (810)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHHHHHHHHhccccccCChHHHhHHhhhhhc--ccHHHHHHHHHHHHH
Confidence 4455555555443 12 34666777776655542 222 11333 678887777777665
Q ss_pred H
Q 003973 185 Y 185 (782)
Q Consensus 185 w 185 (782)
.
T Consensus 190 l 190 (810)
T TIGR00844 190 L 190 (810)
T ss_pred H
Confidence 4
No 62
>PRK09776 putative diguanylate cyclase; Provisional
Probab=21.83 E-value=1.7e+03 Score=28.25 Aligned_cols=26 Identities=23% Similarity=0.701 Sum_probs=16.3
Q ss_pred CCCCcccCceec------CccccchHHHHHHH
Q 003973 75 DDRTWYPLGRVI------GGTVYPGLTLTAGT 100 (782)
Q Consensus 75 D~~sWYPlGR~v------g~T~YPgLm~ta~~ 100 (782)
-...|.|-|--+ +...+|++...+.+
T Consensus 24 ~~~iW~~~g~~~~~ll~~~~~~~~~~~~~~~~ 55 (1092)
T PRK09776 24 LAPLWFPTAIMMVAFYRHAGRMWPGILLSCSL 55 (1092)
T ss_pred cccccccHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 345788888655 45567886654443
No 63
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=21.36 E-value=2.6e+02 Score=34.37 Aligned_cols=71 Identities=23% Similarity=0.371 Sum_probs=51.2
Q ss_pred ehhhHHHHH--HHHHHHHHHHHhcCc--hHHHHHHHHHHhhhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhcCChH
Q 003973 120 FTAPIFSAF--ASWATYLLTKEVKGA--GAGLTAAALLAMVPSYISRSVAGSYDNEAVAIFALIITFYLYIKTLNTGSLF 195 (782)
Q Consensus 120 ~lppvfs~l--t~i~~yll~~e~~~~--~aGLlAA~~iAI~PgyisRSvaG~yDnE~iaif~llltfylwikalktgs~~ 195 (782)
++|--+.+| +++++|..+|.=... .+=+++|++.|++-|- .|.++-.+|..+=.|| ++
T Consensus 233 ~~~~~mFglpgaalAmy~~A~~e~rk~v~~~l~~aaltsfltGI----------TEPiEF~FlFvAP~Ly--------~v 294 (648)
T PRK10255 233 FFPIMMFGLPGAALAMYFAAPKERRPMVGGMLLSVAVTAFLTGV----------TEPLEFLFMFLAPLLY--------LL 294 (648)
T ss_pred chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcC----------CcHHHHHHHHHhHHHH--------HH
Confidence 444444555 678888887654322 2446778888888774 6999999998888887 56
Q ss_pred HHHHHHHHHHHHH
Q 003973 196 YATLNAIAYFYMV 208 (782)
Q Consensus 196 ~a~lagl~y~ymv 208 (782)
.++++|++|..|.
T Consensus 295 Ha~l~G~s~~~~~ 307 (648)
T PRK10255 295 HALLTGISLFVAT 307 (648)
T ss_pred HHHHHHHHHHHHH
Confidence 7999999887664
Done!