Query 003973
Match_columns 782
No_of_seqs 177 out of 323
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 10:03:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003973.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003973hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lgz_A Dolichyl-diphosphooligo 100.0 4.5E-90 1.5E-94 713.1 0.0 235 531-774 15-255 (273)
2 3rce_A Oligosaccharide transfe 100.0 1.3E-65 4.4E-70 601.0 39.9 472 20-632 15-509 (724)
3 3vgp_A Transmembrane oligosacc 100.0 1.2E-48 4.2E-53 382.4 5.6 152 559-749 1-163 (164)
4 3aag_A General glycosylation p 100.0 2E-31 7E-36 283.5 -1.0 117 560-677 9-140 (291)
5 2zai_A Oligosaccharyl transfer 100.0 1.7E-30 5.8E-35 287.7 3.2 110 548-667 2-115 (497)
6 1emz_A Envelope glycoprotein E 72.5 2.2 7.4E-05 29.5 2.3 17 196-212 4-20 (26)
7 3aag_A General glycosylation p 36.9 27 0.00093 36.9 4.4 40 688-749 252-291 (291)
8 2lpm_A Two-component response 21.9 1.3E+02 0.0046 27.1 5.8 62 596-658 4-75 (123)
9 3b5d_A Multidrug transporter E 13.8 5.7E+02 0.02 22.4 7.8 32 173-204 35-68 (110)
10 2i68_A Protein EMRE; transmemb 13.0 4E+02 0.014 24.7 6.7 22 172-193 34-55 (137)
No 1
>2lgz_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3; catalytic domain, oligosaccharyl transferase; NMR {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-90 Score=713.13 Aligned_cols=235 Identities=51% Similarity=0.900 Sum_probs=228.1
Q ss_pred HHhHhhhHhhhhhcccCCcEEEEeccCCC-cccchhHHHHHHHHhhcCCCCCeeeeeccccceeeecccccccccCCCCc
Q 003973 531 AFYVVHCVWAAAEAYSAPSIVLTSYTHEG-LHVFDDFREAYAWLRHNTEVDDKVASWWDYGYQTTAMANRTVIVDNNTWN 609 (782)
Q Consensus 531 ~~~~~h~~~~~~~aySsPsivl~s~~~~G-~~i~DD~reAy~WLr~NTp~da~VmSWWDYGYqIt~manRttlvDNNTwN 609 (782)
+.|+.||+|+++++||+|+|++++++++| +.++|||+|||+|||+|||+|++|||||||||||+++|||+|++||||||
T Consensus 15 ~~~~~h~~w~~s~ays~Psiv~~~~~~~G~~~i~dDw~eAL~WLr~NTp~da~VmSWWDYGY~It~~A~R~tlaDG~t~n 94 (273)
T 2lgz_A 15 VPRGSHSTWVTRTAYSSPSVVLPSQTPDGKLALIDDFREAYYWLRMNSDEDSKVAAWWDYGYQIGGMADRTTLVDNNTWN 94 (273)
Confidence 46889999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred chhHhHHhhhhCCCHHHHHHHHhhcCCCEEEEEeCCccCCCCCchhhHHHHHHhcCCCCC-CCCCCCccc-CCccccCCC
Q 003973 610 NTHIATVGTAMSSPEKAAWEIFNSLDVKYVLVVFGGLVGYPSDDINKFLWMVRIGGGVFP-HIKEPDYLR-DGQYRIDSQ 687 (782)
Q Consensus 610 ~thIa~vGk~laS~E~~A~~Ilr~ldvdYVLVifGg~~gysgdDinKflWMvRIa~~~~p-~i~e~dy~~-~g~y~vd~~ 687 (782)
++||+.+|++|+|||++|++|+|+|+||||||++||++||++||||||+||+|||++++| +|+|.||++ +|+|+||.+
T Consensus 95 ~t~i~~vg~aftSsE~~A~~Ilr~L~vdYVlv~~gg~~gys~dDi~Kf~wM~rIa~~~~~~~I~e~dy~~~~g~~~v~~~ 174 (273)
T 2lgz_A 95 NTHIAIVGKANASPEEKSYEILKEHDVDYVLVIFGGLIGFGGDDINKFLWNIRISEGIWPEEIKERDFYTAEGEYRVDAR 174 (273)
Confidence 999999999999999999999999999999999999999999999999999999999999 899999999 999999999
Q ss_pred CCHhHHHHHhhhhhhccccc--CCCcccccccceeccccC-CCCCcceeeeeccCcEEEEEEecCCCccccccccccCCC
Q 003973 688 ATPTMLNCLMYKLSYYRFVE--TDGKGFDRVRRTEIGKKY-FKLTHFEEVFTTHHWMVRIYKLKPSKNRIRGKMKKSKSR 764 (782)
Q Consensus 688 ~s~~m~~sLmYkl~yy~f~~--~~~~g~D~~r~~~i~~~~-~~l~~~ee~ftS~~w~VRiykvk~~~~~~~~~~~~~~~~ 764 (782)
+||+|+||||||||||||++ ++++||||+||+|||+++ ++|++||||||||||+|||||||+++| ++|+
T Consensus 175 ~s~~m~~SlmYKLsy~~f~~~~~~~~g~Dr~r~~~i~~~~~~~l~~feEvfTS~~wlVRIYkV~~~~~--------~~~~ 246 (273)
T 2lgz_A 175 ASETMRNSLLYKMSYKDFPQLFNGGQATDRVRQQMITPLDVPPLDYFDEVFTSENWNVRIYQLKKDDA--------QGRT 246 (273)
Confidence 99999999999999999998 778899999999999999 899999999999999999999999999 7777
Q ss_pred CCCCCccccC
Q 003973 765 TSTPSSKRSG 774 (782)
Q Consensus 765 ~~~~~~~~~~ 774 (782)
+.++..+++
T Consensus 247 -~~~~~~~~~ 255 (273)
T 2lgz_A 247 -LRDVGELTR 255 (273)
Confidence 888777776
No 2
>3rce_A Oligosaccharide transferase to N-glycosylate PROT; oligosaccharyltransferase, membrane protein, helical bundle, glycosylation, acceptor peptide, plasma membrane; HET: PPN; 3.40A {Campylobacter lari}
Probab=100.00 E-value=1.3e-65 Score=601.03 Aligned_cols=472 Identities=16% Similarity=0.210 Sum_probs=331.1
Q ss_pred HHHHHHHHHHHHHHHHhhccc----------ccccccccccchhHHHHHHHHHHhcCccccccccCCCCcccCceecCcc
Q 003973 20 LSFFILLLIGVLAFSIRLFSV----------IKYESVIHEFDPYFNYRVTQFLTKNGIYDFWNWFDDRTWYPLGRVIGGT 89 (782)
Q Consensus 20 l~~~iL~li~~~af~iRl~sv----------~~y~~iIhEFDPwfNyR~T~yl~~~G~~~f~nWFD~~sWYPlGR~vg~T 89 (782)
..++.+++++++|+++|+.++ ...+..+...||||+.|.++.+.+|++.+ +++| |+|
T Consensus 15 ~~~l~~~~~~~~sl~~R~~~~~w~~~~~~f~~~~~~~~~~~D~yy~~r~ar~~l~~~~~p--~~~~-----p~g------ 81 (724)
T 3rce_A 15 YTCILILIAFAFSVLCRLYWVAWASEFYEFFFNDQLMITTNDGYAFAEGARDMIAGFHQP--NDLS-----YFG------ 81 (724)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHSSCGGGEETTEECCSCHHHHHHHHHHHHHHHSCCCT--TSCC-----CTT------
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhhccCcceEECCEEeeccCCHHHHHHHHHHHHhcCCCC--CCCC-----CCc------
Confidence 344556678888999999863 12256779999999999999999997642 2343 666
Q ss_pred ccchHHHHHHHHHHHHhhcCCCcccceeeeehhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhhhhhhhccccccc
Q 003973 90 VYPGLTLTAGTIWWLLNSLNIPLSVETVCVFTAPIFSAFASWATYLLTKEVKGAGAGLTAAALLAMVPSYISRSVAGSYD 169 (782)
Q Consensus 90 ~YPgLm~ta~~i~~ll~~lg~~v~i~~vcv~lppvfs~lt~i~~yll~~e~~~~~aGLlAA~~iAI~PgyisRSvaG~yD 169 (782)
|.+....+.+++++ +++++++|+++||+||+|+++++|+++||++++.+|++||+++|++|+|++||++|+||
T Consensus 82 --~~~~~l~a~l~~i~-----g~sl~~v~~~lp~ifg~L~vi~~yll~~el~~~~aGl~AAll~ai~P~~i~RS~aG~~D 154 (724)
T 3rce_A 82 --SSLSTLTYWLYSIL-----PFSFESIILYMSTFFASLIVVPIILIAREYKLTTYGFIAALLGSIANSYYNRTMSGYYD 154 (724)
T ss_dssp --CHHHHHHHHHHHSC-----SSCHHHHHHHHHHHHGGGGHHHHHHHHHHTTCHHHHHHHHHHHTTSHHHHHTSSTTCCS
T ss_pred --chHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhcccccc
Confidence 45556667777754 36899999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH-HHHHHhccchhHHHHHHHHHHHHHHHHccCccchhhHHhHHHHH
Q 003973 170 NEAVAIFALIITFYLYIKTLNTGSLFYATLNAIAY-FYMVCSWGGYTFIINLIPMHVLLCIVTGRYSSRLYIAYAPLVVL 248 (782)
Q Consensus 170 nE~iaif~llltfylwikalktgs~~~a~lagl~y-~ymv~aWGGyvFi~nlI~l~~~vl~l~gr~s~rlyvays~~yvl 248 (782)
||+++++++++++|+|+||+|+++..|+++||+++ +||++.||||+|++|++|+|++++++++|++.|+|.+-....
T Consensus 155 ~e~l~i~~~ll~~~~~i~alk~~~~~~~~lagl~~~ly~~~~~ggy~fi~~~i~l~~~~~ll~~r~~~~~~~~~~~~~-- 232 (724)
T 3rce_A 155 TDMLVLVLPMLILLTFIRLTINKDIFTLLLSPIFIMIYLWWYPSSYSLNFAMIGLFGLYTLVFHRKEKIFYLAIALMI-- 232 (724)
T ss_dssp GGGGTTHHHHHHHHHHHHHHHHCCTHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--
T ss_pred chhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHH--
Confidence 99999999999999999999999999999999999 689999999999999999999999999999998887532111
Q ss_pred HHHHhhhccccceeeccchHHHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 003973 249 GTLLAALVPVVGFNAVMTSEHFASFLVFIILHVVALVYYIKGILSPKMFKVAVTLVVSVGLVVCCAVIAILVALVASSPT 328 (782)
Q Consensus 249 gtll~~~iP~vGf~p~~s~e~~~al~vf~ll~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i 328 (782)
-++. .+|+ ++ .+..++.++... ..+ ++.+..... .+ + . .+++++....|.+
T Consensus 233 ~al~--~~~~-~~------------~~~~~~~lf~l~-~~~----~~~~~~~~~-~i-~----~---~~~~~~~~~~gg~ 283 (724)
T 3rce_A 233 IALS--MLAW-QY------------KLALIVLLFAIF-AFK----EEKINFYMI-WA-L----I---FISISILHLSGGL 283 (724)
T ss_dssp HHHS--CCCH-HH------------HHHHHHHHHHHH-HHS----TTCCCHHHH-HH-H----H---HHHHHHHHHHCC-
T ss_pred HHHh--cchh-HH------------HHHHHHHHHHHH-hcc----cchhhhHHH-HH-H----H---HHHHHHHHHhccH
Confidence 1111 1121 11 111111111111 111 111111100 11 1 0 0111111112333
Q ss_pred CCCchhhhhccCcc--cc-----ccc-CCccccccccCCCChhhHHHhhHH--H-HHHHHHHHHHHhcCCCCchHHHHHH
Q 003973 329 KGWSGRSLSLLDPT--YA-----SKY-IPIIASVSEHQPPTWPSYFMDINV--L-AFLVPAGIIACFLPLSDASSFVVLY 397 (782)
Q Consensus 329 ~p~sgR~~sl~~p~--ya-----k~~-~PivaSVsEHqPt~w~sff~dl~~--l-~~~~p~Gl~~~~~~~~d~~~Flily 397 (782)
.|....+-..+.+. -+ ..+ -.+.+||+|-|+++|..+....+. . +.+..+|+.++..|.+ +-++++.+
T Consensus 284 ~~i~~~~~~y~~~~~~~~~~~~~~~~~pnV~~tI~El~~~~~~~~~~~~~g~~~~f~lgl~G~~ll~~r~~-~~ll~Lp~ 362 (724)
T 3rce_A 284 DPVLYQLKFYVFKASDVQNLKDAAFMYFNVNETIMEVNTIDPEVFMQRISSSVLVFILSFIGFILLCKDHK-SMLLALPM 362 (724)
T ss_dssp -----------------------CCCCCCTTTTBGGGCCCCHHHHHHHHHSSHHHHHHHHHHHHHHHTTTS-SGGGGHHH
T ss_pred HHHHHHHHhheeccccccccccccCcCCcHHHHHHHhcCCCHHHHHHhhcCcHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 44333322211111 00 112 339999999999999998887544 3 3334677666555544 55677778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCcCCCCCCCCCCCCccccccccchhhh
Q 003973 398 IVTSVYFSGVMVRLMLVFAPAACIMSGIALSQAFDVFTRSIKFQLLRILGFSEADAGDGSSANVVPENDAVKVDKSEETI 477 (782)
Q Consensus 398 ~v~a~Yfa~~mvRL~l~laP~v~ilagi~is~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (782)
.+++++....-+|+..+++|++++..|+.++.+.+.. +.
T Consensus 363 ~~lG~la~~~G~RF~~~~~P~lalg~G~~i~~~~~~~-~~---------------------------------------- 401 (724)
T 3rce_A 363 LALGFMALRAGLRFTIYAVPVMALGFGYFLYAFFNFL-EK---------------------------------------- 401 (724)
T ss_dssp HHHHHHHHHHCGGGGGGGHHHHHHHHHHHHHHHHHHH-HH----------------------------------------
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH-Hh----------------------------------------
Confidence 8888888888899999999999999999999987652 10
Q ss_pred hccccccchhhHHHHHHHHHHhhhhccchhhhhhhcccchhHHHHHHHHHHHHHHh-HhhhHhhhhhcccCCcEEEEecc
Q 003973 478 KERPSRKNKKKEKEQMEKAQAEKTSAKSKTEKRLLVLPMELSVIGLLLLVFMGAFY-VVHCVWAAAEAYSAPSIVLTSYT 556 (782)
Q Consensus 478 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~l~~~-~~h~~~~~~~aySsPsivl~s~~ 556 (782)
+++|..-+ . .++.+++ ++++++.. +.|.. .|+
T Consensus 402 ------~~~~~~~~---------------------~----~~~~~~~-l~~~~~~p~~~~~~-----~~~---------- 434 (724)
T 3rce_A 402 ------KQIKLSLR---------------------N----KNILLIL-IAFFSISPALMHIY-----YYK---------- 434 (724)
T ss_dssp ------SSCCCCHH---------------------H----HHHHHHH-HHHHHHHHHHHHHH-----HCC----------
T ss_pred ------hhhhhhhh---------------------H----HHHHHHH-HHHHHHHHHHHHhh-----hcC----------
Confidence 00000000 0 0111111 11111111 11211 221
Q ss_pred CCCcccchhHHHHHHHHhhcCCCCCeeeeeccccceeeecccccccccCCCCcchhHhHHhhhhCCCHHHHHHHHh
Q 003973 557 HEGLHVFDDFREAYAWLRHNTEVDDKVASWWDYGYQTTAMANRTVIVDNNTWNNTHIATVGTAMSSPEKAAWEIFN 632 (782)
Q Consensus 557 ~~G~~i~DD~reAy~WLr~NTp~da~VmSWWDYGYqIt~manRttlvDNNTwN~thIa~vGk~laS~E~~A~~Ilr 632 (782)
+ +|.++|||+||+.|||+|||+|++|+|||||||||+.+|||+|++||++||++|+..+|++|+|||++|++|+|
T Consensus 435 ~-~p~~~~~~~~al~~lk~~t~~~~~v~sWWDyGy~i~~~a~r~t~~DGg~~~~~~~y~v~~al~s~~~~a~~i~r 509 (724)
T 3rce_A 435 S-STVFTSYEASILNDLKNKAQREDYVVAWWDYGYPIRYYSDVKTLIDGGKHLGKDNFFSSFVLSKEQIPAANMAR 509 (724)
T ss_dssp C-CCSSCHHHHHHHHHHHTTSCTTCEEECCHHHHHHHHHHHCCEESCCSSSCCHHHHHHHHHHHHSBHHHHHHHHH
T ss_pred C-CCeecHHHHHHHHHHHhcCCCCCEEEEEcccchHHHHHhCCcEeeeCCcCCCccceeeehhcCCCHHHHHHHHH
Confidence 1 26789999999999999999999999999999999999999999999999999999999999999999999988
No 3
>3vgp_A Transmembrane oligosaccharyl transferase, putativ; glycosyltransferase, cell membrane; 1.75A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.2e-48 Score=382.43 Aligned_cols=152 Identities=24% Similarity=0.384 Sum_probs=136.4
Q ss_pred CcccchhHHHHHHHHhhcCCCCC----------eeeeeccccceeeecccccccccCCCCcchhHhHHhhh-hCCCHHHH
Q 003973 559 GLHVFDDFREAYAWLRHNTEVDD----------KVASWWDYGYQTTAMANRTVIVDNNTWNNTHIATVGTA-MSSPEKAA 627 (782)
Q Consensus 559 G~~i~DD~reAy~WLr~NTp~da----------~VmSWWDYGYqIt~manRttlvDNNTwN~thIa~vGk~-laS~E~~A 627 (782)
||.++|||+||++|||+|||+|+ +|||||||||||+++|||++++||+ +++|..++++ |++||++|
T Consensus 1 ~P~i~~dw~eal~Wl~~nTp~~~~~~~~~~p~y~V~sWWDYG~~i~~~a~R~~~ad~~---q~gi~~~A~ffla~~E~~A 77 (164)
T 3vgp_A 1 GPDLTEDWKEALEWMRTSLEEQNYLNPYEKPEYSVMSWWDYGNWILYVSKKAVVANNF---QAGAVDAAKFFTAKSEDEA 77 (164)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCCC-CTTSSCSCSEECCCCHHHHTTTCSTTCSSCSSH---HHHHHHHHHHHTCSSHHHH
T ss_pred CCcccHHHHHHHHHHHhcCCCccccccccCCCCEEEeeccCchhheeeeCCeEEecCC---ccccHHHHHHHhcCCHHHH
Confidence 47799999999999999999999 9999999999999999999999886 5788888885 66699999
Q ss_pred HHHHhhcCCCEEEEEeCCccCCCCCchhhHHHHHHhcCCCCCCCCCCCcccCCccccCCCCCHhHHHHHhhhhhhccccc
Q 003973 628 WEIFNSLDVKYVLVVFGGLVGYPSDDINKFLWMVRIGGGVFPHIKEPDYLRDGQYRIDSQATPTMLNCLMYKLSYYRFVE 707 (782)
Q Consensus 628 ~~Ilr~ldvdYVLVifGg~~gysgdDinKflWMvRIa~~~~p~i~e~dy~~~g~y~vd~~~s~~m~~sLmYkl~yy~f~~ 707 (782)
++|||+|+||||+|++|+.+| +||++||+||+|||++..+ ||++ | +++|+|.||||||||||+..
T Consensus 78 ~~il~~l~v~YV~v~~~~~~~--~~d~~Kf~~m~~~a~~~~~-----~y~~-~------~~~~~~~~sml~rL~~~dgs- 142 (164)
T 3vgp_A 78 IKIAKKRGVRYVVTADEITMK--DANNTKFPAIMRIAGYNVD-----LMTE-G------EILNFFNHTVLYRLHMENAE- 142 (164)
T ss_dssp HHHHHHHTCCEEEECGGGTTS--CTTSCSHHHHHHHTTCCGG-----GSCH-H------HHHHHHHTSHHHHHHTTTTT-
T ss_pred HHHHHHcCCcEEEEEECcccc--cCcchhHHHHHHHHcCCch-----hccC-C------CcCHHHHHHHHHHHhccCCC-
Confidence 999999999999999999988 8999999999999987764 5552 2 35899999999999876532
Q ss_pred CCCcccccccceeccccCCCCCcceeeeeccCcEEEEEEecC
Q 003973 708 TDGKGFDRVRRTEIGKKYFKLTHFEEVFTTHHWMVRIYKLKP 749 (782)
Q Consensus 708 ~~~~g~D~~r~~~i~~~~~~l~~~ee~ftS~~w~VRiykvk~ 749 (782)
+|+|||||||| |+|||||||.
T Consensus 143 -------------------~l~~frlVy~S--~~vrIykv~~ 163 (164)
T 3vgp_A 143 -------------------NLTHFRLVKEF--GDVKIFEVVG 163 (164)
T ss_dssp -------------------TCSSEEEEEEE--TTEEEEEETT
T ss_pred -------------------CcccceEEEEc--CCEEEEEEec
Confidence 48999999999 9999999985
No 4
>3aag_A General glycosylation pathway protein; multidomain, transferase; HET: MLY; 2.80A {Campylobacter jejuni}
Probab=99.96 E-value=2e-31 Score=283.54 Aligned_cols=117 Identities=21% Similarity=0.287 Sum_probs=104.8
Q ss_pred cccchhHHHHHHHHhhcCCCCCeeeeeccccceeeecccccccccCCCCcchhHhHHhhhhCCCHHHHHHHHhhcCCCEE
Q 003973 560 LHVFDDFREAYAWLRHNTEVDDKVASWWDYGYQTTAMANRTVIVDNNTWNNTHIATVGTAMSSPEKAAWEIFNSLDVKYV 639 (782)
Q Consensus 560 ~~i~DD~reAy~WLr~NTp~da~VmSWWDYGYqIt~manRttlvDNNTwN~thIa~vGk~laS~E~~A~~Ilr~ldvdYV 639 (782)
|+++|||.||+.|||+|||+|++|+|||||||||+++|||+|++||+|||++||..+|++|+|||++|++|+| |++||+
T Consensus 9 p~~~~~~~~al~~l~~~t~~~~~v~sWWDyGy~i~~~a~r~t~~Dg~~~~~~~~~~v~~~~~s~e~~a~~i~r-l~~~y~ 87 (291)
T 3aag_A 9 TVFSQNEASLLNQLXNIANREDYVVTWWDYGYPVRYYSDVXTLVDGGXHLGXDNFFPSFALSXDEQAAANMAR-LSVEYT 87 (291)
T ss_dssp -----CHHHHHHHHHHHSCTTCEEECCGGGHHHHHHHHCCEESCBTTBCCHHHHHHHHHHHHSCHHHHHHHHH-HHHHHH
T ss_pred CccCHHHHHHHHHHHhcCCCCCEEEEEecCCceeeeecceeEEecCCccCCceeEEeeecccCCHHHHHHHHH-hhhhhc
Confidence 7889999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred EEEe---------C----C-ccCCCCCchhhHHHHHHhcCCCC-CCCCCCCcc
Q 003973 640 LVVF---------G----G-LVGYPSDDINKFLWMVRIGGGVF-PHIKEPDYL 677 (782)
Q Consensus 640 LVif---------G----g-~~gysgdDinKflWMvRIa~~~~-p~i~e~dy~ 677 (782)
.+.| | + +.+|+++|+|||+||+|+++-.+ |+-...+|+
T Consensus 88 ~~~f~~~~~~~~~~~~l~~~~~~y~~~~~n~fL~~l~~~~~~~~p~~~~~~Y~ 140 (291)
T 3aag_A 88 EXSFYAPQNDILXSDILQAMMXDYNQSNVDLFLASLSXPDFXIDTPXTRDIYL 140 (291)
T ss_dssp HHTTC----CTTSSCHHHHHHHTTTCCCHHHHHHHTTSSCCCCCSCCCSCEEE
T ss_pred chhccccccccchhhhhhhhhhccCchhHHHHHHhhcccccccCCCCCCCEEE
Confidence 9876 3 2 56799999999999999999998 866666775
No 5
>2zai_A Oligosaccharyl transferase STT3 subunit related P; multi-domain proteins (alpha and beta); 2.70A {Pyrococcus furiosus} PDB: 2zag_A
Probab=99.96 E-value=1.7e-30 Score=287.70 Aligned_cols=110 Identities=25% Similarity=0.450 Sum_probs=83.1
Q ss_pred CcEEEEeccCCC-cccchhHHHHHHHHhhcCCCCCeeeeecccccee--eecccccccccCCCCc-chhHhHHhhhhCCC
Q 003973 548 PSIVLTSYTHEG-LHVFDDFREAYAWLRHNTEVDDKVASWWDYGYQT--TAMANRTVIVDNNTWN-NTHIATVGTAMSSP 623 (782)
Q Consensus 548 Psivl~s~~~~G-~~i~DD~reAy~WLr~NTp~da~VmSWWDYGYqI--t~manRttlvDNNTwN-~thIa~vGk~laS~ 623 (782)
||++.+.+.-++ +.++|||+|||+|||+|||+|++||||||||||| +++|||+|++||+||| ++| .+|++|+|+
T Consensus 2 ~~~~~~~~~~~~~pvi~ddw~eAL~WLr~NTPeda~VmSWWDYGY~I~~t~~A~R~tlaDG~t~n~~~~--~vAk~LtSn 79 (497)
T 2zai_A 2 PLLAQSAKSMRTTEIETSGWEDALKWLRENTPEYSTATSWWDYGYWIESSLLGQRRASADGGHARDRDH--ILALFLARD 79 (497)
T ss_dssp ---------------CCSSHHHHHHHHHHHSCTTCCEEEGGGHHHHHHTTTTC---------CCSHHHH--HHHHHHHCC
T ss_pred chHhhhhhhhcCCCCCCHHHHHHHHHHHhcCCCCCEEEEeecCccceeeEeecCceEEEcCCcCCCCcc--hhheeccCC
Confidence 677776666666 8999999999999999999999999999999999 9999999999999998 566 699999999
Q ss_pred HHHHHHHHhhcCCCEEEEEeCCccCCCCCchhhHHHHHHhcCCC
Q 003973 624 EKAAWEIFNSLDVKYVLVVFGGLVGYPSDDINKFLWMVRIGGGV 667 (782)
Q Consensus 624 E~~A~~Ilr~ldvdYVLVifGg~~gysgdDinKflWMvRIa~~~ 667 (782)
|++|+++|+++++|||+|. .||++||+||.|||++.
T Consensus 80 E~~A~~iL~~L~vdYViV~--------~dDi~KF~~i~~igg~~ 115 (497)
T 2zai_A 80 GNISEVDFESWELNYFLVY--------LNDWAKFNAISYLGGAI 115 (497)
T ss_dssp SGGGCCCGGGGTCCEEEEE--------GGGGGGHHHHHHHTTSS
T ss_pred HhHHHHHHHHhCCcEEEEE--------hhHhHHHHHHHHhhccc
Confidence 9999999999999999997 68999999999999877
No 6
>1emz_A Envelope glycoprotein E1; peptide, transmembrane domain, envelope protein E1, hepatitis C virus, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=72.48 E-value=2.2 Score=29.46 Aligned_cols=17 Identities=47% Similarity=0.968 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHhcc
Q 003973 196 YATLNAIAYFYMVCSWG 212 (782)
Q Consensus 196 ~a~lagl~y~ymv~aWG 212 (782)
|++++|++||.|+..|.
T Consensus 4 wGvl~glayfsm~gnWa 20 (26)
T 1emz_A 4 WGVLAGIAYFSMVGNWA 20 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHhhHHh
Confidence 89999999999999996
No 7
>3aag_A General glycosylation pathway protein; multidomain, transferase; HET: MLY; 2.80A {Campylobacter jejuni}
Probab=36.91 E-value=27 Score=36.89 Aligned_cols=40 Identities=15% Similarity=0.309 Sum_probs=31.3
Q ss_pred CCHhHHHHHhhhhhhcccccCCCcccccccceeccccCCCCCcceeeeeccCcEEEEEEecC
Q 003973 688 ATPTMLNCLMYKLSYYRFVETDGKGFDRVRRTEIGKKYFKLTHFEEVFTTHHWMVRIYKLKP 749 (782)
Q Consensus 688 ~s~~m~~sLmYkl~yy~f~~~~~~g~D~~r~~~i~~~~~~l~~~ee~ftS~~w~VRiykvk~ 749 (782)
.+..|.||++-+| +=+++ -+.++||+||.+ -.|||||||.
T Consensus 252 md~~~~nS~f~qL--~~l~~------------------yd~~~Fe~V~~~--p~~kIyklk~ 291 (291)
T 3aag_A 252 MDXTMFNSAYVQM--FFLGN------------------YDXNLFDLVINS--RDAXVFXLXI 291 (291)
T ss_dssp ECHHHHHSHHHHH--TTSCC------------------CCTTTEEEEEEC--SSEEEEEECC
T ss_pred EechHhhhhhhhe--eeecC------------------CCcceeEEEEeC--CCeEEEEecC
Confidence 4689999999999 33331 236799999977 7799999984
No 8
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=21.94 E-value=1.3e+02 Score=27.10 Aligned_cols=62 Identities=19% Similarity=0.216 Sum_probs=46.1
Q ss_pred ccccc---ccccCCCCcchhHhHHhh-------hhCCCHHHHHHHHhhcCCCEEEEEeCCccCCCCCchhhHH
Q 003973 596 MANRT---VIVDNNTWNNTHIATVGT-------AMSSPEKAAWEIFNSLDVKYVLVVFGGLVGYPSDDINKFL 658 (782)
Q Consensus 596 manRt---tlvDNNTwN~thIa~vGk-------~laS~E~~A~~Ilr~ldvdYVLVifGg~~gysgdDinKfl 658 (782)
|.+|. -+||.+.-+.+.+...-+ ..++|.++|.+.+++...|-|+..... -|.+|-++-+-+
T Consensus 4 m~~r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~~DlvllDi~m-P~~~G~el~~~l 75 (123)
T 2lpm_A 4 MTERRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARKGQFDIAIIDVNL-DGEPSYPVADIL 75 (123)
T ss_dssp CCCCCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHCCSSEEEECSSS-SSCCSHHHHHHH
T ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCCCEEEEecCC-CCCCHHHHHHHH
Confidence 55554 588988888888775522 246899999999999999999988654 456777776643
No 9
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=13.76 E-value=5.7e+02 Score=22.36 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCC--hHHHHHHHHHH
Q 003973 173 VAIFALIITFYLYIKTLNTGS--LFYATLNAIAY 204 (782)
Q Consensus 173 iaif~llltfylwikalktgs--~~~a~lagl~y 204 (782)
..++...+.|++|.+++|+.+ ..|++.+|+.+
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~ 68 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGI 68 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHH
Confidence 455667888999999999865 34444455533
No 10
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=12.98 E-value=4e+02 Score=24.73 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC
Q 003973 172 AVAIFALIITFYLYIKTLNTGS 193 (782)
Q Consensus 172 ~iaif~llltfylwikalktgs 193 (782)
.++++...+.|++|.+++|..+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~ 55 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIP 55 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 4678888999999999999854
Done!