Query 003973
Match_columns 782
No_of_seqs 177 out of 323
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 10:03:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003973.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/003973hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mvoa_ c.23.1.1 (A:) PhoP rec 20.0 30 0.0022 28.7 3.1 60 596-656 1-66 (121)
2 d1ppqa_ g.18.1.1 (A:) Compleme 12.4 28 0.002 26.4 0.7 24 588-611 35-60 (68)
3 d1w25a1 c.23.1.1 (A:2-140) Res 12.3 84 0.0061 26.4 4.1 58 599-657 3-66 (139)
4 d1quba2 g.18.1.1 (A:63-120) be 11.3 32 0.0023 25.2 0.7 31 580-611 22-52 (58)
5 d1peya_ c.23.1.1 (A:) Sporulat 10.8 70 0.0051 26.3 2.9 60 599-659 3-68 (119)
6 d1u0sy_ c.23.1.1 (Y:) CheY pro 9.0 89 0.0065 25.5 2.9 59 597-656 1-66 (118)
7 d2ayxa1 c.23.1.1 (A:817-949) S 8.7 1.2E+02 0.0085 25.3 3.6 59 600-659 11-75 (133)
8 d1ny5a1 c.23.1.1 (A:1-137) Tra 8.3 96 0.007 25.9 2.9 56 601-657 4-65 (137)
9 d1p6qa_ c.23.1.1 (A:) CheY pro 8.0 1.1E+02 0.0081 25.2 3.1 57 599-656 8-71 (129)
10 d2bs2c1 f.21.2.1 (C:1-254) Fum 7.9 4.2E+02 0.031 24.6 7.8 18 210-228 130-147 (254)
No 1
>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]}
Probab=20.03 E-value=30 Score=28.66 Aligned_cols=60 Identities=12% Similarity=0.026 Sum_probs=44.8
Q ss_pred cccccccccCCCCcchhHhHHhh------hhCCCHHHHHHHHhhcCCCEEEEEeCCccCCCCCchhh
Q 003973 596 MANRTVIVDNNTWNNTHIATVGT------AMSSPEKAAWEIFNSLDVKYVLVVFGGLVGYPSDDINK 656 (782)
Q Consensus 596 manRttlvDNNTwN~thIa~vGk------~laS~E~~A~~Ilr~ldvdYVLVifGg~~gysgdDinK 656 (782)
|..|.-+||.|.-+.+.+...-+ ..++|.++|.+.+++...|-|++.... .+.+|.++-+
T Consensus 1 M~krILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlillD~~m-p~~~G~~~~~ 66 (121)
T d1mvoa_ 1 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVML-PKLDGIEVCK 66 (121)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESSC-SSSCHHHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcccccEEEecccc-cCCCCchhhh
Confidence 55678889988877777775533 467799999999999999999988654 3445555543
No 2
>d1ppqa_ g.18.1.1 (A:) Complement receptor 1, cr1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.36 E-value=28 Score=26.43 Aligned_cols=24 Identities=17% Similarity=0.397 Sum_probs=20.5
Q ss_pred cccceeeecccccccccCC--CCcch
Q 003973 588 DYGYQTTAMANRTVIVDNN--TWNNT 611 (782)
Q Consensus 588 DYGYqIt~manRttlvDNN--TwN~t 611 (782)
|=||++.+-+.|+-+.||+ +|++.
T Consensus 35 ~~Gy~l~G~~~~~C~~~g~~~~Ws~~ 60 (68)
T d1ppqa_ 35 TTGHRLIGHSSAECILSGNTAHWSTK 60 (68)
T ss_dssp STTCCBSSCSCCCEEECSSSEEESSC
T ss_pred CCCcEEcCCCcEEEeCCCCCCEECCC
Confidence 7799999999999988876 79753
No 3
>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}
Probab=12.33 E-value=84 Score=26.42 Aligned_cols=58 Identities=14% Similarity=0.013 Sum_probs=42.1
Q ss_pred ccccccCCCCcchhHhHHhh------hhCCCHHHHHHHHhhcCCCEEEEEeCCccCCCCCchhhH
Q 003973 599 RTVIVDNNTWNNTHIATVGT------AMSSPEKAAWEIFNSLDVKYVLVVFGGLVGYPSDDINKF 657 (782)
Q Consensus 599 RttlvDNNTwN~thIa~vGk------~laS~E~~A~~Ilr~ldvdYVLVifGg~~gysgdDinKf 657 (782)
|.-+||.+.-+-+.++..-+ ..++|.++|.+.++++..|-|++..-. .+.+|.++-+.
T Consensus 3 rILiVDD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~dlil~D~~~-p~~~G~~~~~~ 66 (139)
T d1w25a1 3 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDVMM-PGMDGFTVCRK 66 (139)
T ss_dssp EEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESCC-SSSCHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEEccchhhhhhhhcccceeeeeeccc-cCCCchHHHHH
Confidence 55678888877777776633 467899999999999999988887532 34455555543
No 4
>d1quba2 g.18.1.1 (A:63-120) beta2-glycoprotein I {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.33 E-value=32 Score=25.21 Aligned_cols=31 Identities=6% Similarity=0.278 Sum_probs=23.0
Q ss_pred CCeeeeeccccceeeecccccccccCCCCcch
Q 003973 580 DDKVASWWDYGYQTTAMANRTVIVDNNTWNNT 611 (782)
Q Consensus 580 da~VmSWWDYGYqIt~manRttlvDNNTwN~t 611 (782)
.++|-=-=|-||.+.+-..|+-. +|.+|+++
T Consensus 22 g~~v~y~C~~Gy~l~G~~~~~C~-~~g~Ws~~ 52 (58)
T d1quba2 22 PNTISFSCNTGFYLNGADSAKCT-EEGKWSPE 52 (58)
T ss_dssp TCEEEEEECTTEEEESCSEEEEC-TTSCEESC
T ss_pred CCEEEEEcCCCCEEcCCCCeEEC-CCCeECCC
Confidence 45555555889999999998885 55689864
No 5
>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}
Probab=10.75 E-value=70 Score=26.25 Aligned_cols=60 Identities=18% Similarity=0.102 Sum_probs=42.6
Q ss_pred ccccccCCCCcchhHhHHhh------hhCCCHHHHHHHHhhcCCCEEEEEeCCccCCCCCchhhHHH
Q 003973 599 RTVIVDNNTWNNTHIATVGT------AMSSPEKAAWEIFNSLDVKYVLVVFGGLVGYPSDDINKFLW 659 (782)
Q Consensus 599 RttlvDNNTwN~thIa~vGk------~laS~E~~A~~Ilr~ldvdYVLVifGg~~gysgdDinKflW 659 (782)
|.-+||.|.-+...+..+-. ..++|.++|.+.+++...|-|++.... .|.+|-|+-|-+.
T Consensus 3 rILvVDD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~dlillD~~m-P~~~G~el~~~lr 68 (119)
T d1peya_ 3 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKI-PGMDGIEILKRMK 68 (119)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESCC-TTCCHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCCCEEEEeccC-CCCCHHHHHHHHH
Confidence 55577877766666654422 467799999999999999988887553 4567777777543
No 6
>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}
Probab=8.98 E-value=89 Score=25.49 Aligned_cols=59 Identities=20% Similarity=0.194 Sum_probs=41.2
Q ss_pred ccccccccCCCCcchhHhHHhh------h-hCCCHHHHHHHHhhcCCCEEEEEeCCccCCCCCchhh
Q 003973 597 ANRTVIVDNNTWNNTHIATVGT------A-MSSPEKAAWEIFNSLDVKYVLVVFGGLVGYPSDDINK 656 (782)
Q Consensus 597 anRttlvDNNTwN~thIa~vGk------~-laS~E~~A~~Ilr~ldvdYVLVifGg~~gysgdDinK 656 (782)
|.|.-+||.+.-+.+.+...-+ . .++|.++|.+.+++...|-|++.... .+.+|-|+-+
T Consensus 1 GkrILivDD~~~~~~~l~~~L~~~g~~v~~~a~~~~~al~~~~~~~~dliilD~~m-p~~~G~e~~~ 66 (118)
T d1u0sy_ 1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITM-PEMNGIDAIK 66 (118)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEECSC-GGGCHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHhccCCEEEEecCC-CCCCHHHHHH
Confidence 4566678887766666664421 2 46899999999999999999998643 3445555544
No 7
>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=8.67 E-value=1.2e+02 Score=25.27 Aligned_cols=59 Identities=12% Similarity=0.110 Sum_probs=42.5
Q ss_pred cccccCCCCcchhHhHHhh------hhCCCHHHHHHHHhhcCCCEEEEEeCCccCCCCCchhhHHH
Q 003973 600 TVIVDNNTWNNTHIATVGT------AMSSPEKAAWEIFNSLDVKYVLVVFGGLVGYPSDDINKFLW 659 (782)
Q Consensus 600 ttlvDNNTwN~thIa~vGk------~laS~E~~A~~Ilr~ldvdYVLVifGg~~gysgdDinKflW 659 (782)
.-+||.|.-+.+.+...-+ ..++|.++|.+++++...|-|++.... .+.+|-++-+-+.
T Consensus 11 ILiVDD~~~~~~~l~~~L~~~g~~v~~a~~g~ea~~~~~~~~~dlillD~~m-P~~dG~el~~~ir 75 (133)
T d2ayxa1 11 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNM-PNMDGYRLTQRIR 75 (133)
T ss_dssp EEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHSCCSEEEEEESS-CSSCCHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHHcCCEEEEECcHHHHHHHHhccCceEEEEeccC-CCCCHHHHHHHHH
Confidence 3467777767777765532 367789999999999999999998764 4556766666543
No 8
>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=8.34 E-value=96 Score=25.94 Aligned_cols=56 Identities=13% Similarity=0.179 Sum_probs=38.2
Q ss_pred ccccCCCCcchhHhHHhh------hhCCCHHHHHHHHhhcCCCEEEEEeCCccCCCCCchhhH
Q 003973 601 VIVDNNTWNNTHIATVGT------AMSSPEKAAWEIFNSLDVKYVLVVFGGLVGYPSDDINKF 657 (782)
Q Consensus 601 tlvDNNTwN~thIa~vGk------~laS~E~~A~~Ilr~ldvdYVLVifGg~~gysgdDinKf 657 (782)
-+||.+.-+.+.+...-+ ..+++.++|.+.++++..|-|++..- +.+.+|-|+-+.
T Consensus 4 LiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eAl~~l~~~~~dlvilD~~-mp~~~G~e~~~~ 65 (137)
T d1ny5a1 4 LVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLDLL-LPDVNGLEILKW 65 (137)
T ss_dssp EEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHSCCSEEEEESB-CSSSBHHHHHHH
T ss_pred EEEecCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHhhccccccchHHHh-hhhhhHHHHHHH
Confidence 357776655566654422 35779999999999999999998854 334455555443
No 9
>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]}
Probab=7.95 E-value=1.1e+02 Score=25.21 Aligned_cols=57 Identities=12% Similarity=0.142 Sum_probs=38.5
Q ss_pred ccccccCCCCcchhHhHH----hh---hhCCCHHHHHHHHhhcCCCEEEEEeCCccCCCCCchhh
Q 003973 599 RTVIVDNNTWNNTHIATV----GT---AMSSPEKAAWEIFNSLDVKYVLVVFGGLVGYPSDDINK 656 (782)
Q Consensus 599 RttlvDNNTwN~thIa~v----Gk---~laS~E~~A~~Ilr~ldvdYVLVifGg~~gysgdDinK 656 (782)
|.-+||.|.-+...+... |- ..++|.++|.+.+++...|-|++.... -+.+|-++-+
T Consensus 8 kILiVDD~~~~~~~l~~~L~~~g~~~v~~a~~~~~al~~l~~~~~dlii~D~~m-P~~~G~el~~ 71 (129)
T d1p6qa_ 8 KVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHHLVISDFNM-PKMDGLGLLQ 71 (129)
T ss_dssp CEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTSCCSEEEECSSS-CSSCHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhCCCCeEEeeeec-CCCChHHHHH
Confidence 345688877766666633 32 246789999999999989977776553 3445555544
No 10
>d2bs2c1 f.21.2.1 (C:1-254) Fumarate reductase respiratory complex cytochrome b subunit, FrdC {Wolinella succinogenes [TaxId: 844]}
Probab=7.91 E-value=4.2e+02 Score=24.59 Aligned_cols=18 Identities=17% Similarity=0.484 Sum_probs=8.9
Q ss_pred hccchhHHHHHHHHHHHHH
Q 003973 210 SWGGYTFIINLIPMHVLLC 228 (782)
Q Consensus 210 aWGGyvFi~nlI~l~~~vl 228 (782)
.|.|.+.+. .|..|..-.
T Consensus 130 ~~tG~ill~-fi~~Hl~~~ 147 (254)
T d2bs2c1 130 AMTGFAMFF-LGSVHLYIM 147 (254)
T ss_dssp HHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHH
Confidence 455544333 466676543
Done!