Query 003974
Match_columns 782
No_of_seqs 409 out of 2593
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 15:18:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003974.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003974hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00675 dcm DNA-methyltransf 100.0 2E-53 4.3E-58 462.1 22.3 173 264-563 1-175 (315)
2 COG0270 Dcm Site-specific DNA 100.0 1.1E-51 2.4E-56 451.2 22.9 295 260-781 2-299 (328)
3 PF00145 DNA_methylase: C-5 cy 100.0 1.1E-52 2.5E-57 457.6 14.1 196 262-607 1-197 (335)
4 cd00315 Cyt_C5_DNA_methylase C 100.0 2E-50 4.3E-55 430.9 20.6 169 262-556 1-169 (275)
5 PRK10458 DNA cytosine methylas 100.0 2.5E-44 5.5E-49 404.7 22.7 192 257-555 84-292 (467)
6 cd04716 BAH_plantDCM_I BAH, or 100.0 1.4E-29 2.9E-34 236.0 12.3 121 113-233 1-121 (122)
7 cd04708 BAH_plantDCM_II BAH, o 100.0 2.3E-28 4.9E-33 243.5 13.6 163 109-274 1-202 (202)
8 cd04760 BAH_Dnmt1_I BAH, or Br 99.9 2.5E-27 5.4E-32 219.2 10.5 115 113-230 1-124 (124)
9 cd04713 BAH_plant_3 BAH, or Br 99.9 2.5E-25 5.5E-30 214.9 13.5 130 101-233 6-137 (146)
10 KOG0919 C-5 cytosine-specific 99.9 3.7E-26 8E-31 227.9 6.1 166 260-551 2-170 (338)
11 cd04712 BAH_DCM_I BAH, or Brom 99.9 1.9E-24 4E-29 204.4 12.5 113 112-233 2-129 (130)
12 cd04714 BAH_BAHCC1 BAH, or Bro 99.9 1.4E-23 2.9E-28 196.8 10.2 115 113-228 1-118 (121)
13 cd04715 BAH_Orc1p_like BAH, or 99.9 4.2E-23 9E-28 201.0 12.4 110 71-202 6-123 (159)
14 cd04710 BAH_fungalPHD BAH, or 99.9 4.3E-23 9.4E-28 195.9 11.1 117 109-230 5-134 (135)
15 cd04370 BAH BAH, or Bromo Adja 99.9 4.6E-23 9.9E-28 192.9 11.1 120 113-233 1-123 (123)
16 PF01426 BAH: BAH domain; Int 99.9 3.7E-23 7.9E-28 193.1 9.5 116 114-233 1-119 (119)
17 cd04709 BAH_MTA BAH, or Bromo 99.9 8.3E-23 1.8E-27 199.4 12.1 127 113-241 1-148 (164)
18 cd04717 BAH_polybromo BAH, or 99.9 8.7E-23 1.9E-27 191.8 10.4 119 113-233 1-120 (121)
19 smart00439 BAH Bromo adjacent 99.9 1.2E-22 2.5E-27 189.9 10.9 118 115-233 1-120 (120)
20 cd04721 BAH_plant_1 BAH, or Br 99.8 2.9E-21 6.3E-26 182.7 9.4 116 109-225 1-117 (130)
21 cd04719 BAH_Orc1p_animal BAH, 99.8 8E-19 1.7E-23 164.5 9.1 117 114-233 2-127 (128)
22 cd04711 BAH_Dnmt1_II BAH, or B 99.8 2E-18 4.2E-23 160.5 9.3 105 129-234 24-137 (137)
23 cd04718 BAH_plant_2 BAH, or Br 99.7 7.2E-19 1.6E-23 166.5 1.1 98 129-232 50-147 (148)
24 cd04720 BAH_Orc1p_Yeast BAH, o 99.7 1.7E-16 3.6E-21 158.4 10.3 121 111-232 48-177 (179)
25 KOG1886 BAH domain proteins [T 99.6 2.3E-15 5E-20 165.4 7.0 150 65-233 15-169 (464)
26 KOG1827 Chromatin remodeling c 99.1 3.2E-11 7E-16 137.8 5.6 129 103-233 177-307 (629)
27 KOG3554 Histone deacetylase co 98.5 2E-08 4.3E-13 108.9 -1.1 122 114-237 4-168 (693)
28 TIGR02085 meth_trns_rumB 23S r 97.1 0.0016 3.5E-08 73.2 9.6 41 262-309 235-275 (374)
29 COG2263 Predicted RNA methylas 96.9 0.0017 3.7E-08 65.0 5.8 43 263-311 48-90 (198)
30 PF13659 Methyltransf_26: Meth 96.9 0.002 4.4E-08 59.2 6.1 44 262-312 2-46 (117)
31 TIGR00479 rumA 23S rRNA (uraci 96.8 0.011 2.4E-07 67.7 12.6 41 262-309 294-334 (431)
32 TIGR03704 PrmC_rel_meth putati 96.8 0.005 1.1E-07 65.4 9.0 44 261-309 87-130 (251)
33 PRK11783 rlmL 23S rRNA m(2)G24 96.8 0.011 2.3E-07 72.0 12.7 43 261-309 539-581 (702)
34 PF09445 Methyltransf_15: RNA 96.7 0.0057 1.2E-07 60.5 8.1 40 263-309 2-41 (163)
35 PF03602 Cons_hypoth95: Conser 96.6 0.0056 1.2E-07 61.9 7.4 45 260-310 42-86 (183)
36 PRK03522 rumB 23S rRNA methylu 96.5 0.0088 1.9E-07 65.6 8.9 41 262-309 175-215 (315)
37 cd00024 CHROMO Chromatin organ 96.2 0.0015 3.3E-08 52.0 0.6 36 396-431 18-53 (55)
38 PHA03411 putative methyltransf 96.2 0.012 2.6E-07 62.9 7.4 53 262-319 66-118 (279)
39 TIGR00095 RNA methyltransferas 96.2 0.0064 1.4E-07 61.8 5.0 57 261-323 50-112 (189)
40 PRK13168 rumA 23S rRNA m(5)U19 96.1 0.04 8.6E-07 63.4 11.9 42 261-309 298-339 (443)
41 COG0742 N6-adenine-specific me 96.1 0.015 3.2E-07 58.7 7.2 45 259-309 42-86 (187)
42 PRK10909 rsmD 16S rRNA m(2)G96 96.1 0.01 2.2E-07 60.8 6.2 43 261-309 54-96 (199)
43 PHA03412 putative methyltransf 96.0 0.01 2.2E-07 62.0 5.6 55 261-318 50-105 (241)
44 COG2265 TrmA SAM-dependent met 96.0 0.05 1.1E-06 62.2 11.5 43 260-309 293-335 (432)
45 TIGR00446 nop2p NOL1/NOP2/sun 95.8 0.035 7.5E-07 59.4 8.8 47 260-310 71-117 (264)
46 KOG3420 Predicted RNA methylas 95.7 0.0078 1.7E-07 57.6 3.0 50 259-314 47-96 (185)
47 PRK15128 23S rRNA m(5)C1962 me 95.6 0.032 6.9E-07 63.2 8.0 43 261-309 221-263 (396)
48 TIGR00537 hemK_rel_arch HemK-r 95.6 0.08 1.7E-06 52.9 10.1 41 262-309 21-61 (179)
49 PF02475 Met_10: Met-10+ like- 95.3 0.019 4.2E-07 58.8 4.7 43 262-309 103-145 (200)
50 PRK14967 putative methyltransf 95.1 0.26 5.6E-06 51.2 12.2 43 261-309 37-79 (223)
51 TIGR00308 TRM1 tRNA(guanine-26 94.9 0.033 7.1E-07 62.6 5.2 58 261-323 45-108 (374)
52 PRK14904 16S rRNA methyltransf 94.9 0.045 9.7E-07 63.1 6.5 46 261-310 251-296 (445)
53 PF00385 Chromo: Chromo (CHRro 94.8 0.014 3E-07 46.7 1.5 34 398-431 19-53 (55)
54 smart00298 CHROMO Chromatin or 94.6 0.016 3.5E-07 45.9 1.5 39 394-432 14-52 (55)
55 PRK05031 tRNA (uracil-5-)-meth 94.4 0.054 1.2E-06 60.7 5.5 54 263-323 209-267 (362)
56 PRK04338 N(2),N(2)-dimethylgua 94.3 0.072 1.6E-06 60.1 6.3 57 262-323 59-120 (382)
57 KOG1911 Heterochromatin-associ 94.1 0.046 1E-06 58.7 3.9 55 373-433 45-99 (270)
58 PRK14902 16S rRNA methyltransf 93.9 0.092 2E-06 60.5 6.2 43 261-309 251-295 (444)
59 PRK14901 16S rRNA methyltransf 93.9 0.1 2.2E-06 59.9 6.4 47 260-310 252-298 (434)
60 PRK10901 16S rRNA methyltransf 93.8 0.08 1.7E-06 60.7 5.5 46 260-311 244-290 (427)
61 COG2520 Predicted methyltransf 93.8 0.063 1.4E-06 59.2 4.2 44 260-309 188-231 (341)
62 COG1092 Predicted SAM-dependen 93.5 0.71 1.5E-05 52.1 12.1 41 262-309 219-260 (393)
63 PRK00121 trmB tRNA (guanine-N( 93.4 0.57 1.2E-05 48.0 10.5 45 260-309 40-84 (202)
64 TIGR02143 trmA_only tRNA (urac 93.2 0.11 2.3E-06 58.1 5.0 54 263-323 200-258 (353)
65 PF05958 tRNA_U5-meth_tr: tRNA 92.7 0.1 2.2E-06 58.3 3.9 40 263-309 199-238 (352)
66 COG4123 Predicted O-methyltran 92.7 0.18 3.8E-06 53.3 5.5 43 261-309 45-88 (248)
67 smart00650 rADc Ribosomal RNA 92.6 0.14 3E-06 50.8 4.3 54 262-322 15-71 (169)
68 TIGR01177 conserved hypothetic 92.5 0.52 1.1E-05 52.1 9.2 43 260-309 182-224 (329)
69 PRK14903 16S rRNA methyltransf 92.5 0.31 6.6E-06 56.0 7.6 44 261-310 238-283 (431)
70 TIGR03534 RF_mod_PrmC protein- 92.2 0.87 1.9E-05 47.6 10.1 44 261-309 88-131 (251)
71 PRK11805 N5-glutamine S-adenos 92.1 0.29 6.3E-06 53.6 6.5 43 262-309 135-177 (307)
72 cd02440 AdoMet_MTases S-adenos 91.7 1 2.2E-05 38.6 8.4 39 263-307 1-39 (107)
73 PF12847 Methyltransf_18: Meth 91.4 0.28 6E-06 44.4 4.5 54 261-319 2-61 (112)
74 KOG1227 Putative methyltransfe 90.6 0.15 3.4E-06 54.5 2.3 43 262-309 196-238 (351)
75 PF05175 MTS: Methyltransferas 90.6 0.41 8.9E-06 47.6 5.3 46 260-310 31-76 (170)
76 PF10672 Methyltrans_SAM: S-ad 90.4 0.63 1.4E-05 50.4 6.8 42 262-309 125-166 (286)
77 PRK03612 spermidine synthase; 90.4 2.1 4.5E-05 50.5 11.7 87 444-551 372-460 (521)
78 COG2890 HemK Methylase of poly 90.0 0.36 7.7E-06 52.2 4.5 44 263-311 113-156 (280)
79 TIGR00563 rsmB ribosomal RNA s 89.9 0.48 1E-05 54.3 5.7 45 260-310 238-283 (426)
80 KOG2904 Predicted methyltransf 89.6 0.45 9.7E-06 50.5 4.7 45 261-310 149-193 (328)
81 PRK11933 yebU rRNA (cytosine-C 89.4 0.87 1.9E-05 52.8 7.3 47 260-310 113-159 (470)
82 PF13847 Methyltransf_31: Meth 89.3 0.51 1.1E-05 45.7 4.7 59 259-321 2-65 (152)
83 PRK07402 precorrin-6B methylas 89.2 0.71 1.5E-05 46.8 5.8 56 261-321 41-101 (196)
84 PRK09328 N5-glutamine S-adenos 88.8 0.65 1.4E-05 49.5 5.5 46 260-310 108-153 (275)
85 PRK14966 unknown domain/N5-glu 88.5 0.94 2E-05 51.5 6.6 43 262-309 253-295 (423)
86 PRK00274 ksgA 16S ribosomal RN 87.6 0.66 1.4E-05 49.8 4.6 55 261-322 43-99 (272)
87 TIGR03533 L3_gln_methyl protei 86.6 0.96 2.1E-05 49.0 5.1 44 261-309 122-165 (284)
88 PRK01581 speE spermidine synth 86.0 17 0.00037 40.8 14.5 92 444-555 225-318 (374)
89 TIGR00755 ksgA dimethyladenosi 85.9 0.84 1.8E-05 48.4 4.2 54 261-321 30-86 (253)
90 TIGR03587 Pse_Me-ase pseudamin 85.2 1.2 2.7E-05 45.7 4.9 54 261-320 44-98 (204)
91 PRK14896 ksgA 16S ribosomal RN 84.6 1 2.2E-05 48.0 4.1 54 261-321 30-86 (258)
92 PRK00377 cbiT cobalt-precorrin 84.4 2.1 4.6E-05 43.5 6.2 57 260-322 40-104 (198)
93 PRK11727 23S rRNA mA1618 methy 83.2 1.8 3.9E-05 47.7 5.4 47 258-309 112-158 (321)
94 PRK08287 cobalt-precorrin-6Y C 83.1 1.7 3.8E-05 43.6 4.9 44 261-309 32-75 (187)
95 PF13649 Methyltransf_25: Meth 83.0 1.9 4.1E-05 38.5 4.6 57 264-322 1-61 (101)
96 PLN02336 phosphoethanolamine N 82.9 3.8 8.3E-05 47.5 8.3 39 261-306 38-76 (475)
97 PRK11036 putative S-adenosyl-L 82.5 2.5 5.5E-05 44.7 6.1 56 260-322 44-105 (255)
98 PRK06202 hypothetical protein; 82.5 2.1 4.6E-05 44.6 5.4 50 260-310 60-109 (232)
99 PRK04148 hypothetical protein; 82.5 2.4 5.3E-05 40.6 5.3 51 260-319 16-67 (134)
100 COG0144 Sun tRNA and rRNA cyto 82.3 3 6.4E-05 46.7 6.8 51 259-312 155-205 (355)
101 TIGR00080 pimt protein-L-isoas 82.3 3.8 8.2E-05 42.2 7.1 47 260-310 77-123 (215)
102 PF02005 TRM: N2,N2-dimethylgu 82.2 2 4.4E-05 48.4 5.4 60 260-323 49-115 (377)
103 TIGR02021 BchM-ChlM magnesium 81.8 1.8 3.8E-05 44.7 4.5 44 260-310 55-98 (219)
104 KOG2730 Methylase [General fun 81.4 1.2 2.7E-05 45.9 3.0 41 262-309 96-136 (263)
105 PRK01683 trans-aconitate 2-met 81.4 2.5 5.4E-05 44.6 5.6 58 260-322 31-88 (258)
106 TIGR00536 hemK_fam HemK family 81.4 1.8 3.9E-05 46.7 4.6 43 262-309 116-158 (284)
107 PRK10258 biotin biosynthesis p 81.2 1.9 4.2E-05 45.3 4.6 54 261-321 43-96 (251)
108 COG2264 PrmA Ribosomal protein 81.0 2.2 4.8E-05 46.4 5.0 45 259-309 161-205 (300)
109 PRK10742 putative methyltransf 80.2 2.8 6.1E-05 44.4 5.3 44 261-311 89-132 (250)
110 PLN02585 magnesium protoporphy 79.5 2.8 6.1E-05 46.1 5.2 45 260-311 144-188 (315)
111 PF06325 PrmA: Ribosomal prote 79.5 2.2 4.8E-05 46.5 4.4 43 261-309 162-204 (295)
112 PRK11207 tellurite resistance 79.2 3 6.5E-05 42.4 5.1 42 261-309 31-72 (197)
113 TIGR00406 prmA ribosomal prote 79.0 2.9 6.3E-05 45.3 5.2 44 260-309 159-202 (288)
114 TIGR00138 gidB 16S rRNA methyl 78.8 3 6.5E-05 42.0 4.9 56 261-321 43-103 (181)
115 PRK00517 prmA ribosomal protei 78.6 3 6.5E-05 44.1 5.0 44 260-309 119-162 (250)
116 PLN02396 hexaprenyldihydroxybe 78.5 3.4 7.4E-05 45.6 5.6 56 260-322 131-192 (322)
117 TIGR02469 CbiT precorrin-6Y C5 77.9 4.1 8.9E-05 37.1 5.2 43 261-309 20-63 (124)
118 PTZ00338 dimethyladenosine tra 77.7 3.2 7E-05 45.2 5.0 54 261-321 37-96 (294)
119 COG2227 UbiG 2-polyprenyl-3-me 77.4 3 6.5E-05 43.8 4.4 49 259-314 58-106 (243)
120 PF01189 Nol1_Nop2_Fmu: NOL1/N 76.8 10 0.00022 41.1 8.5 47 260-310 85-131 (283)
121 TIGR03840 TMPT_Se_Te thiopurin 76.4 3.4 7.4E-05 42.8 4.6 39 261-306 35-73 (213)
122 PRK15001 SAM-dependent 23S rib 75.6 3.6 7.7E-05 46.4 4.8 43 262-309 230-272 (378)
123 PRK14968 putative methyltransf 75.5 4.1 8.9E-05 40.3 4.8 42 261-309 24-65 (188)
124 KOG2748 Uncharacterized conser 75.1 3.2 6.9E-05 45.3 3.9 53 374-433 8-60 (369)
125 PRK09489 rsmC 16S ribosomal RN 75.0 3.8 8.3E-05 45.6 4.8 42 263-309 199-240 (342)
126 PLN02244 tocopherol O-methyltr 74.8 3.6 7.9E-05 45.7 4.6 44 259-308 117-160 (340)
127 COG2226 UbiE Methylase involve 74.1 4.8 0.0001 42.4 5.0 58 260-322 51-113 (238)
128 KOG2078 tRNA modification enzy 73.9 2.8 6.1E-05 47.2 3.3 60 257-323 246-312 (495)
129 PLN02781 Probable caffeoyl-CoA 73.9 5.4 0.00012 41.9 5.4 59 261-323 69-133 (234)
130 COG3963 Phospholipid N-methylt 73.2 9.6 0.00021 38.0 6.4 65 260-328 48-112 (194)
131 PRK01544 bifunctional N5-gluta 73.0 4.7 0.0001 47.3 5.1 44 261-309 139-182 (506)
132 KOG3191 Predicted N6-DNA-methy 73.0 11 0.00025 38.0 6.9 40 261-304 44-83 (209)
133 PRK13255 thiopurine S-methyltr 73.0 4.7 0.0001 41.9 4.6 39 261-306 38-76 (218)
134 PF01170 UPF0020: Putative RNA 72.8 5.3 0.00011 40.2 4.8 48 260-310 28-82 (179)
135 PRK04266 fibrillarin; Provisio 72.4 6.9 0.00015 40.9 5.7 55 260-319 72-129 (226)
136 PRK07580 Mg-protoporphyrin IX 72.3 5.9 0.00013 40.7 5.2 44 260-310 63-106 (230)
137 PRK12335 tellurite resistance 71.6 5.2 0.00011 43.3 4.7 40 263-309 123-162 (287)
138 PLN02823 spermine synthase 71.4 89 0.0019 34.8 14.4 67 481-551 200-268 (336)
139 KOG1122 tRNA and rRNA cytosine 71.3 5.2 0.00011 45.1 4.6 51 258-312 239-289 (460)
140 PF03848 TehB: Tellurite resis 70.2 6.4 0.00014 40.2 4.7 40 261-307 31-70 (192)
141 TIGR00091 tRNA (guanine-N(7)-) 69.6 11 0.00023 38.3 6.2 58 260-322 16-78 (194)
142 PF00398 RrnaAD: Ribosomal RNA 69.3 5.4 0.00012 42.6 4.2 55 260-321 30-87 (262)
143 PRK00050 16S rRNA m(4)C1402 me 67.7 12 0.00025 41.0 6.3 61 260-326 19-84 (296)
144 TIGR00477 tehB tellurite resis 67.7 8.7 0.00019 39.0 5.2 41 261-308 31-71 (195)
145 PRK15451 tRNA cmo(5)U34 methyl 67.2 7 0.00015 41.2 4.5 58 261-321 57-120 (247)
146 PRK11524 putative methyltransf 66.7 7.3 0.00016 42.1 4.6 43 260-309 208-250 (284)
147 PF01555 N6_N4_Mtase: DNA meth 66.5 7.6 0.00017 39.4 4.5 39 261-306 192-230 (231)
148 TIGR02752 MenG_heptapren 2-hep 66.1 8.6 0.00019 39.7 4.9 55 261-321 46-107 (231)
149 PRK00811 spermidine synthase; 65.6 12 0.00026 40.4 6.0 58 261-323 77-144 (283)
150 TIGR02987 met_A_Alw26 type II 65.3 7.9 0.00017 45.6 4.9 49 260-309 31-83 (524)
151 PRK11188 rrmJ 23S rRNA methylt 65.3 5.7 0.00012 40.9 3.3 53 260-322 51-103 (209)
152 COG2521 Predicted archaeal met 65.3 15 0.00032 38.6 6.1 70 445-529 205-276 (287)
153 COG0030 KsgA Dimethyladenosine 65.1 8.8 0.00019 41.0 4.6 54 261-321 31-87 (259)
154 PRK13944 protein-L-isoaspartat 64.7 10 0.00022 38.8 5.0 45 260-310 72-118 (205)
155 PF13489 Methyltransf_23: Meth 64.7 9.1 0.0002 36.5 4.4 39 259-304 21-59 (161)
156 PRK00107 gidB 16S rRNA methylt 63.6 11 0.00024 38.2 4.9 44 261-309 46-89 (187)
157 PRK11088 rrmA 23S rRNA methylt 62.9 11 0.00023 40.5 4.9 59 260-321 85-144 (272)
158 COG5076 Transcription factor i 61.3 1.3 2.9E-05 49.7 -2.4 91 108-199 269-360 (371)
159 COG2242 CobL Precorrin-6B meth 60.7 19 0.00041 36.5 5.8 59 260-323 34-97 (187)
160 PTZ00098 phosphoethanolamine N 60.4 15 0.00032 39.3 5.4 47 259-311 51-97 (263)
161 PF02086 MethyltransfD12: D12 60.4 6.6 0.00014 41.3 2.8 40 260-306 20-59 (260)
162 PRK05134 bifunctional 3-demeth 60.0 14 0.0003 38.3 5.1 43 260-309 48-90 (233)
163 TIGR00478 tly hemolysin TlyA f 59.5 18 0.00038 38.0 5.7 46 260-311 75-120 (228)
164 TIGR01934 MenG_MenH_UbiE ubiqu 59.3 16 0.00035 37.0 5.4 57 260-320 39-98 (223)
165 PF09926 DUF2158: Uncharacteri 58.7 14 0.00031 29.6 3.7 39 116-157 1-39 (53)
166 COG2230 Cfa Cyclopropane fatty 58.0 15 0.00032 39.8 4.9 44 258-307 70-113 (283)
167 PF05185 PRMT5: PRMT5 arginine 57.5 10 0.00022 43.9 3.8 62 260-322 186-253 (448)
168 PLN02233 ubiquinone biosynthes 57.3 14 0.00031 39.4 4.7 44 261-308 74-117 (261)
169 COG1867 TRM1 N2,N2-dimethylgua 56.6 18 0.00038 40.4 5.2 59 261-324 53-116 (380)
170 TIGR02072 BioC biotin biosynth 55.6 22 0.00048 36.4 5.7 57 260-321 34-91 (240)
171 PRK04457 spermidine synthase; 55.3 21 0.00046 38.1 5.6 57 262-323 68-130 (262)
172 KOG2187 tRNA uracil-5-methyltr 55.2 6.7 0.00015 45.4 1.8 41 262-309 385-425 (534)
173 PF08241 Methyltransf_11: Meth 54.8 18 0.0004 30.8 4.2 51 265-321 1-53 (95)
174 PLN02672 methionine S-methyltr 54.8 15 0.00032 46.9 4.9 43 262-309 120-162 (1082)
175 PRK06922 hypothetical protein; 54.3 17 0.00037 43.7 5.0 56 261-321 419-478 (677)
176 PRK08317 hypothetical protein; 54.0 19 0.00042 36.7 4.9 55 260-320 19-79 (241)
177 PRK14103 trans-aconitate 2-met 53.7 20 0.00043 37.9 5.0 56 260-322 29-84 (255)
178 PTZ00146 fibrillarin; Provisio 53.3 23 0.00051 38.5 5.5 56 260-319 132-190 (293)
179 PF11599 AviRa: RRNA methyltra 53.1 23 0.00051 36.7 5.1 49 257-310 48-98 (246)
180 PRK00216 ubiE ubiquinone/menaq 53.1 19 0.00041 36.9 4.7 45 260-310 51-97 (239)
181 TIGR00438 rrmJ cell division p 53.0 10 0.00023 38.0 2.7 50 261-320 33-82 (188)
182 TIGR02081 metW methionine bios 51.2 26 0.00057 35.2 5.3 53 261-321 14-66 (194)
183 KOG1270 Methyltransferases [Co 51.1 15 0.00032 39.3 3.4 40 262-308 91-130 (282)
184 PF01209 Ubie_methyltran: ubiE 51.0 18 0.0004 38.0 4.2 57 260-322 47-110 (233)
185 TIGR01983 UbiG ubiquinone bios 50.4 24 0.00052 36.1 5.0 43 260-309 45-87 (224)
186 PRK00312 pcm protein-L-isoaspa 50.1 23 0.0005 36.2 4.7 46 259-311 77-122 (212)
187 PF02384 N6_Mtase: N-6 DNA Met 50.0 18 0.00039 39.3 4.1 48 260-308 46-96 (311)
188 KOG0739 AAA+-type ATPase [Post 49.0 51 0.0011 36.0 7.0 94 413-506 131-241 (439)
189 COG1041 Predicted DNA modifica 48.9 14 0.0003 41.0 3.0 43 262-311 199-241 (347)
190 cd05834 HDGF_related The PWWP 47.5 27 0.00058 30.6 4.0 42 115-157 2-43 (83)
191 PRK13942 protein-L-isoaspartat 47.4 30 0.00065 35.6 5.1 46 260-309 76-121 (212)
192 TIGR01444 fkbM_fam methyltrans 46.6 31 0.00067 32.5 4.7 42 263-309 1-42 (143)
193 PRK13699 putative methylase; P 46.5 27 0.00059 36.5 4.6 40 261-307 164-203 (227)
194 PLN02490 MPBQ/MSBQ methyltrans 46.1 37 0.00081 37.8 5.8 58 259-321 112-171 (340)
195 PRK11705 cyclopropane fatty ac 46.1 32 0.0007 38.9 5.5 46 260-311 167-212 (383)
196 TIGR00740 methyltransferase, p 46.0 35 0.00076 35.5 5.4 59 260-321 53-117 (239)
197 PF03291 Pox_MCEL: mRNA cappin 45.9 22 0.00048 39.4 4.0 44 260-309 62-105 (331)
198 TIGR03438 probable methyltrans 45.6 27 0.00059 38.0 4.6 59 261-323 64-128 (301)
199 COG3897 Predicted methyltransf 45.1 11 0.00024 38.4 1.4 46 258-309 77-122 (218)
200 PRK15068 tRNA mo(5)U34 methylt 42.7 29 0.00063 38.3 4.3 55 261-321 123-183 (322)
201 PF01728 FtsJ: FtsJ-like methy 42.5 26 0.00056 34.8 3.6 50 260-319 23-72 (181)
202 PRK05785 hypothetical protein; 42.0 31 0.00066 36.0 4.2 42 261-308 52-93 (226)
203 TIGR00417 speE spermidine synt 41.5 56 0.0012 35.0 6.2 57 262-323 74-139 (270)
204 cd06080 MUM1_like Mutated mela 40.5 44 0.00095 29.2 4.1 39 116-158 1-39 (80)
205 PLN02336 phosphoethanolamine N 40.0 40 0.00086 39.1 5.1 45 260-310 266-310 (475)
206 TIGR00452 methyltransferase, p 39.7 38 0.00082 37.3 4.6 55 261-321 122-182 (314)
207 PLN02476 O-methyltransferase 39.4 49 0.0011 35.8 5.3 59 261-323 119-183 (278)
208 PRK14121 tRNA (guanine-N(7)-)- 38.4 53 0.0012 37.3 5.6 57 262-323 124-185 (390)
209 PRK13943 protein-L-isoaspartat 38.1 49 0.0011 36.6 5.2 46 260-309 80-125 (322)
210 PF02254 TrkA_N: TrkA-N domain 37.3 74 0.0016 28.7 5.5 51 267-322 2-52 (116)
211 KOG2133 Transcriptional corepr 37.0 30 0.00065 42.7 3.4 122 110-231 140-282 (1229)
212 PF02390 Methyltransf_4: Putat 36.5 61 0.0013 33.0 5.2 57 263-324 20-81 (195)
213 cd05835 Dnmt3b_related The PWW 36.0 40 0.00087 29.7 3.3 40 116-156 1-43 (87)
214 PF10383 Clr2: Transcription-s 35.6 1.3E+02 0.0029 29.0 7.1 53 105-157 2-72 (139)
215 PRK09496 trkA potassium transp 35.3 61 0.0013 37.1 5.7 54 266-322 234-287 (453)
216 PTZ00415 transmission-blocking 34.3 14 0.00029 48.1 0.1 12 22-33 133-144 (2849)
217 PF07021 MetW: Methionine bios 33.4 95 0.0021 31.8 5.9 56 260-323 13-68 (193)
218 PRK11873 arsM arsenite S-adeno 33.3 69 0.0015 34.0 5.3 58 260-321 77-139 (272)
219 PF13651 EcoRI_methylase: Aden 33.3 1.3E+02 0.0028 33.2 7.2 82 409-525 110-191 (336)
220 COG5475 Uncharacterized small 31.9 1.3E+02 0.0027 24.5 5.0 38 114-159 3-40 (60)
221 COG3640 CooC CO dehydrogenase 31.7 5.1E+02 0.011 27.6 10.9 54 444-507 97-150 (255)
222 PF13679 Methyltransf_32: Meth 31.4 79 0.0017 30.2 4.9 46 259-307 24-71 (141)
223 cd05162 PWWP The PWWP domain, 29.3 68 0.0015 27.9 3.7 40 116-156 1-46 (87)
224 smart00828 PKS_MT Methyltransf 28.7 71 0.0015 32.7 4.3 43 263-311 2-45 (224)
225 PLN02366 spermidine synthase 28.2 1.2E+02 0.0026 33.3 6.2 58 261-323 92-158 (308)
226 COG4671 Predicted glycosyl tra 27.7 1.2E+02 0.0027 33.9 5.9 74 444-522 42-134 (400)
227 PRK13251 transcription attenua 27.6 2E+02 0.0043 24.5 5.7 49 150-199 19-67 (75)
228 TIGR01228 hutU urocanate hydra 27.5 1.5E+02 0.0033 34.5 6.8 61 264-328 159-219 (545)
229 cd05291 HicDH_like L-2-hydroxy 26.3 5.2E+02 0.011 28.1 10.7 36 269-305 6-41 (306)
230 PF02081 TrpBP: Tryptophan RNA 26.3 1.7E+02 0.0037 24.9 5.1 49 150-199 19-67 (75)
231 PF14812 PBP1_TM: Transmembran 26.2 22 0.00048 31.1 0.0 9 67-75 62-70 (81)
232 PF11302 DUF3104: Protein of u 26.0 86 0.0019 27.1 3.5 27 116-142 6-38 (75)
233 smart00293 PWWP domain with co 25.6 93 0.002 25.5 3.6 41 116-157 1-48 (63)
234 COG4076 Predicted RNA methylas 25.2 75 0.0016 32.4 3.4 53 263-322 35-92 (252)
235 cd05840 SPBC215_ISWI_like The 25.0 72 0.0016 28.6 3.0 40 116-156 1-49 (93)
236 PRK10708 hypothetical protein; 24.9 1.7E+02 0.0037 23.8 4.7 43 117-160 2-51 (62)
237 COG4106 Tam Trans-aconitate me 24.0 1.3E+02 0.0028 31.6 4.9 58 260-322 30-87 (257)
238 PF10294 Methyltransf_16: Puta 23.2 1.1E+02 0.0025 30.3 4.4 44 260-309 45-88 (173)
239 PF01175 Urocanase: Urocanase; 22.9 2.6E+02 0.0057 32.8 7.6 62 264-329 158-219 (546)
240 PF00855 PWWP: PWWP domain; I 22.1 99 0.0021 26.5 3.3 41 116-157 1-44 (86)
241 PRK05414 urocanate hydratase; 21.6 2.3E+02 0.005 33.2 6.8 61 264-328 168-228 (556)
242 PRK11760 putative 23S rRNA C24 21.2 95 0.0021 34.7 3.6 53 258-319 209-261 (357)
243 PF10781 DSRB: Dextransucrase 21.2 2.5E+02 0.0054 22.9 4.9 44 117-161 2-52 (62)
244 PF11717 Tudor-knot: RNA bindi 21.1 2.6E+02 0.0055 22.3 5.2 27 116-143 1-27 (55)
245 smart00138 MeTrc Methyltransfe 20.9 1.4E+02 0.0029 32.0 4.7 45 260-309 99-152 (264)
246 PF02353 CMAS: Mycolic acid cy 20.9 1.2E+02 0.0025 32.8 4.2 43 259-307 61-103 (273)
247 PF08940 DUF1918: Domain of un 20.6 1.5E+02 0.0032 24.4 3.7 39 117-156 4-43 (58)
248 COG0569 TrkA K+ transport syst 20.0 1.5E+02 0.0034 30.8 4.8 53 267-322 4-56 (225)
No 1
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2e-53 Score=462.14 Aligned_cols=173 Identities=27% Similarity=0.458 Sum_probs=149.5
Q ss_pred eeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchHHHHHHHHHHHHHhhhhcccCCCC
Q 003974 264 LLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDFLSLLKEWAKLCQYFSIYDTDK 343 (782)
Q Consensus 264 ~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (782)
++|||||||||++|| +.||++++ ||+|+|+.|++||++|||+ .+..+||.++.
T Consensus 1 vidLF~G~GG~~~Gl----~~aG~~~~--~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~-------------------- 53 (315)
T TIGR00675 1 FIDLFAGIGGIRLGF----EQAGFKCV--FASEIDKYAQKTYEANFGN-KVPFGDITKIS-------------------- 53 (315)
T ss_pred CEEEecCccHHHHHH----HHcCCeEE--EEEeCCHHHHHHHHHhCCC-CCCccChhhhh--------------------
Confidence 689999999999999 78998854 9999999999999999998 66666765541
Q ss_pred CcccccccCchhhhhhhhhhhcccCCCCCCchhHHHHHHHHHhcCCCCCCCCCcceeEEeeccCCCCCCCcccccccchh
Q 003974 344 VPEQSLNFMSEEEEEEEEEEEENDDDANVPNEEFEVERLIAVCYGDPNKTKKPGVYFKVRWKGYGPSEDTWEPIKGLSKC 423 (782)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 423 (782)
..+
T Consensus 54 ------------------------------~~~----------------------------------------------- 56 (315)
T TIGR00675 54 ------------------------------PSD----------------------------------------------- 56 (315)
T ss_pred ------------------------------hhh-----------------------------------------------
Confidence 000
Q ss_pred hhhhHHhHhccccccCCCCCCCccEEEecCCchhhcccCcCCCCCccccccccchHHHHHHHHHHhCCcEEEeccccccc
Q 003974 424 KEKLKEFVTKGYRSNILPLPGDVDFICGGPPCQGVSGFNRFRNPQAALEDIKNRQLLVFMDVIEYLKPKYVLMENVVDIL 503 (782)
Q Consensus 424 ~~~~~~~~~~~~~~~~~p~~~~vDvl~ggpPCQ~fS~ag~~~~~~~~~~d~r~~L~~~~~~ii~~~~P~~~v~ENV~gl~ 503 (782)
.+++|||+||||||+||.+|+++ +.+|+|+.|+++++++|+.++|++|+||||+||+
T Consensus 57 -------------------~~~~dvl~gg~PCq~fS~ag~~~----~~~d~r~~L~~~~~r~i~~~~P~~~v~ENV~~l~ 113 (315)
T TIGR00675 57 -------------------IPDFDILLGGFPCQPFSIAGKRK----GFEDTRGTLFFEIVRILKEKKPKFFLLENVKGLV 113 (315)
T ss_pred -------------------CCCcCEEEecCCCcccchhcccC----CCCCchhhHHHHHHHHHhhcCCCEEEeeccHHHH
Confidence 13689999999999999998744 3578999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHhcCCcceEEEEEecccCCCCccccEEEEEEec-CCCC-CCCCCCCcc
Q 003974 504 KFSGGFLARYAVGRLVSMDYQTRLGIMAAGSYGLPQFRLRVFLWGAR-PFKK-LPQYPLPTH 563 (782)
Q Consensus 504 ~~~~~~~~~~i~~~l~~~GY~v~~~ilnA~~yGvPQ~R~R~flig~~-~~~~-~p~~P~pth 563 (782)
+..++..+..++..|+.+||.+.+.+|||++||+||+|+|+|+||++ .+.. ...||.|||
T Consensus 114 ~~~~~~~~~~i~~~l~~~GY~v~~~~l~a~dyGvPQ~R~R~f~ia~r~~~~~~~~~~p~~~~ 175 (315)
T TIGR00675 114 SHDKGRTFKVIIETLEELGYKVYYKVLNAKDFGVPQNRERIYIVGFRDFDDKLNFEFPKPIY 175 (315)
T ss_pred hcccchHHHHHHHHHHhCCCEEEEEEEcHHHCCCCCCccEEEEEEEeCCCcCcCCCCCCCcc
Confidence 99888899999999999999999999999999999999999999999 4432 235666654
No 2
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.1e-51 Score=451.16 Aligned_cols=295 Identities=29% Similarity=0.428 Sum_probs=213.7
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchHHHHHHHHHHHHHhhhhccc
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDFLSLLKEWAKLCQYFSIY 339 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 339 (782)
..++++||||||||+++|| +.|||++ +||+|+|+.|++||++|||.+.+...|+..+.
T Consensus 2 ~~~~~idLFsG~GG~~lGf----~~agf~~--~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~---------------- 59 (328)
T COG0270 2 EKMKVIDLFAGIGGLSLGF----EEAGFEI--VFANEIDPPAVATYKANFPHGDIILGDIKELD---------------- 59 (328)
T ss_pred CCceEEeeccCCchHHHHH----HhcCCeE--EEEEecCHHHHHHHHHhCCCCceeechHhhcC----------------
Confidence 5689999999999999999 7899885 49999999999999999997666555554431
Q ss_pred CCCCCcccccccCchhhhhhhhhhhcccCCCCCCchhHHHHHHHHHhcCCCCCCCCCcceeEEeeccCCCCCCCcccccc
Q 003974 340 DTDKVPEQSLNFMSEEEEEEEEEEEENDDDANVPNEEFEVERLIAVCYGDPNKTKKPGVYFKVRWKGYGPSEDTWEPIKG 419 (782)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 419 (782)
.+.+
T Consensus 60 ----------------------------------~~~~------------------------------------------ 63 (328)
T COG0270 60 ----------------------------------GEAL------------------------------------------ 63 (328)
T ss_pred ----------------------------------hhhc------------------------------------------
Confidence 0000
Q ss_pred cchhhhhhHHhHhccccccCCCCCC-CccEEEecCCchhhcccCcCCCCCccccccccchHHHHHHHHHHhCCcEEEecc
Q 003974 420 LSKCKEKLKEFVTKGYRSNILPLPG-DVDFICGGPPCQGVSGFNRFRNPQAALEDIKNRQLLVFMDVIEYLKPKYVLMEN 498 (782)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~p~~~-~vDvl~ggpPCQ~fS~ag~~~~~~~~~~d~r~~L~~~~~~ii~~~~P~~~v~EN 498 (782)
++ ++|||+||||||+||.||++ ++.+|+|++|+++++++|+.++|++|||||
T Consensus 64 -----------------------~~~~~DvligGpPCQ~FS~aG~r----~~~~D~R~~L~~~~~r~I~~~~P~~fv~EN 116 (328)
T COG0270 64 -----------------------RKSDVDVLIGGPPCQDFSIAGKR----RGYDDPRGSLFLEFIRLIEQLRPKFFVLEN 116 (328)
T ss_pred -----------------------cccCCCEEEeCCCCcchhhcCcc----cCCcCccceeeHHHHHHHHhhCCCEEEEec
Confidence 12 79999999999999999975 357999999999999999999999999999
Q ss_pred ccccccccccchHHHHHHHHhcCCcceEEEEEecccCCCCccccEEEEEEecCCCCCCCCCCCccccccccCCCchhHHH
Q 003974 499 VVDILKFSGGFLARYAVGRLVSMDYQTRLGIMAAGSYGLPQFRLRVFLWGARPFKKLPQYPLPTHEIVARGVIPNEFQEI 578 (782)
Q Consensus 499 V~gl~~~~~~~~~~~i~~~l~~~GY~v~~~ilnA~~yGvPQ~R~R~flig~~~~~~~p~~P~pth~~~~~~~~p~~~~~~ 578 (782)
|+||++. ++..++.+++.|+++||.+.+.+|||++|||||+|+|+||||++++........+
T Consensus 117 V~gl~~~-~~~~~~~i~~~L~~~GY~~~~~ilna~dyGvPQ~ReRvfiig~~~~~~~~~~~~~----------------- 178 (328)
T COG0270 117 VKGLLSS-KGQTFDEIKKELEELGYGVEFNILNAADYGVPQSRERVFIVGFRRDNIDLDPNVL----------------- 178 (328)
T ss_pred CchHHhc-CchHHHHHHHHHHHcCCcchHheeeHHhcCCCCCccEEEEEEecCcccccccccc-----------------
Confidence 9999998 7889999999999999999999999999999999999999999985211111100
Q ss_pred HHhhcCCCCccccCcccHHhhhcc--CCCCCCCCCccccccCCccchHHHHHHHhhcccccccccccccCCCCccCCCCc
Q 003974 579 IVAYANNQPCQLEKGVLLSDAISD--LPLVTNNESEDERKYGTVARTEFQKYIRLRRHDVVNLSSAQMASRPSLLYDHRP 656 (782)
Q Consensus 579 ~~~~~~~~~~~~~~~~tv~dAI~d--Lp~~~~~~~~~~~~y~~~p~t~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~H~~ 656 (782)
.........++.+++.+ ++...... . .....+|..
T Consensus 179 -------~~~~~~~~~~~~~~i~~~~~~~~~~~~-------~-----------------------------~~~~~~~~~ 215 (328)
T COG0270 179 -------PPLPLGRKKTLKEALKNNDLPETDELY-------L-----------------------------SRDLRNHEA 215 (328)
T ss_pred -------CccccccccchhhhhhhccCcchhhhh-------c-----------------------------ccccccccc
Confidence 00112234667777763 33211100 0 001122222
Q ss_pred cCCCHHHHHHHccCcccCCCCccCCCCCccCCCCCcccCcchhhhhhcCCCCCCcccccccccCCCCCCeeeccCCCccc
Q 003974 657 FQVNNDDYERVCCIPKRKGANFRDLPGVLVGPDNKVRWDPSMERVMLKSGKPLVPDYAMKFEHQSSTKPFGRLWWDEIVN 736 (782)
Q Consensus 657 ~~~~~~~~~ri~~ip~~~G~~~rdlp~~~~~~~~~~~~~~~~~~~~l~~gk~l~p~~~~~~~~~~~~~~y~Rl~wd~p~p 736 (782)
..+......+.... +.... ...+........|.||+|++|++
T Consensus 216 ~~~~~~~~~~~~~~-----------~~~~~---------------------------~~~~~~~~~~~~~~rl~~~~~~~ 257 (328)
T COG0270 216 KSLPKNKGERLPSL-----------RWGEA---------------------------LTLSRRYKGKGSYIRLHPDKPAP 257 (328)
T ss_pred ccCchhhhcccccc-----------ccccc---------------------------cccccccCCCceeEeCCCCCCCc
Confidence 21111111111110 00000 00011112267899999999999
Q ss_pred ceecccCCCCCcccCCCCCccCcHHHHHHhcCCCCCcEEcCCCCC
Q 003974 737 TVVTRAQPHNRILLHPSQDRVLTIRENARLQGFPDCYQLFGPVKE 781 (782)
Q Consensus 737 TItt~~~~~~~~~iHP~q~R~LTVREaARLQgFPD~y~F~Gs~~~ 781 (782)
|+++ ..+...+||.++|.||+||+||||||||+|.|.|+.++
T Consensus 258 t~~~---~~~~~~~h~~~~r~lt~rE~arlq~fPd~~~~~gs~~~ 299 (328)
T COG0270 258 TVRG---GGNERFIHPLEDRELTVREAARLQGFPDDFVFPGSKTD 299 (328)
T ss_pred eeec---CCCcccCCCCcCCCCCHHHHHHhcCCCCceEEeccchh
Confidence 9983 34567999999999999999999999999999997654
No 3
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=100.00 E-value=1.1e-52 Score=457.63 Aligned_cols=196 Identities=37% Similarity=0.675 Sum_probs=154.6
Q ss_pred cceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchHHHHHHHHHHHHHhhhhcccCC
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDFLSLLKEWAKLCQYFSIYDT 341 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 341 (782)
|+++||||||||+++|| +.+|+++ +||+|+|+.|++||++||| .+..+||.++.
T Consensus 1 ~~~~dlFsG~Gg~~~g~----~~ag~~~--~~a~e~~~~a~~~y~~N~~--~~~~~Di~~~~------------------ 54 (335)
T PF00145_consen 1 MKVIDLFSGIGGFSLGL----EQAGFEV--VWAVEIDPDACETYKANFP--EVICGDITEID------------------ 54 (335)
T ss_dssp EEEEEET-TTTHHHHHH----HHTTEEE--EEEEESSHHHHHHHHHHHT--EEEESHGGGCH------------------
T ss_pred CcEEEEccCccHHHHHH----HhcCcEE--EEEeecCHHHHHhhhhccc--ccccccccccc------------------
Confidence 58999999999999999 7899875 4999999999999999999 66676765531
Q ss_pred CCCcccccccCchhhhhhhhhhhcccCCCCCCchhHHHHHHHHHhcCCCCCCCCCcceeEEeeccCCCCCCCcccccccc
Q 003974 342 DKVPEQSLNFMSEEEEEEEEEEEENDDDANVPNEEFEVERLIAVCYGDPNKTKKPGVYFKVRWKGYGPSEDTWEPIKGLS 421 (782)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 421 (782)
...
T Consensus 55 --------------------------------~~~--------------------------------------------- 57 (335)
T PF00145_consen 55 --------------------------------PSD--------------------------------------------- 57 (335)
T ss_dssp --------------------------------HHH---------------------------------------------
T ss_pred --------------------------------ccc---------------------------------------------
Confidence 000
Q ss_pred hhhhhhHHhHhccccccCCCCCCCccEEEecCCchhhcccCcCCCCCccccccccchHHHHHHHHHHhCCcEEEeccccc
Q 003974 422 KCKEKLKEFVTKGYRSNILPLPGDVDFICGGPPCQGVSGFNRFRNPQAALEDIKNRQLLVFMDVIEYLKPKYVLMENVVD 501 (782)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~p~~~~vDvl~ggpPCQ~fS~ag~~~~~~~~~~d~r~~L~~~~~~ii~~~~P~~~v~ENV~g 501 (782)
+ ++++|||+||||||+||.+|++ .+.+|+|+.|+++++++|+.++|++||||||+|
T Consensus 58 ------------------l--~~~~D~l~ggpPCQ~fS~ag~~----~~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~ 113 (335)
T PF00145_consen 58 ------------------L--PKDVDLLIGGPPCQGFSIAGKR----KGFDDPRNSLFFEFLRIVKELKPKYFLLENVPG 113 (335)
T ss_dssp ------------------H--HHT-SEEEEE---TTTSTTSTH----HCCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGG
T ss_pred ------------------c--cccceEEEeccCCceEeccccc----cccccccchhhHHHHHHHhhccceEEEecccce
Confidence 0 1269999999999999999963 346899999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHhcCCcceEEEEEecccCCCCccccEEEEEEecCCCCCC-CCCCCccccccccCCCchhHHHHH
Q 003974 502 ILKFSGGFLARYAVGRLVSMDYQTRLGIMAAGSYGLPQFRLRVFLWGARPFKKLP-QYPLPTHEIVARGVIPNEFQEIIV 580 (782)
Q Consensus 502 l~~~~~~~~~~~i~~~l~~~GY~v~~~ilnA~~yGvPQ~R~R~flig~~~~~~~p-~~P~pth~~~~~~~~p~~~~~~~~ 580 (782)
|++..++..++.+++.|.++||.+.+.+|||++|||||+|+|+||||++++...+ .++.+.+...
T Consensus 114 l~~~~~~~~~~~i~~~l~~lGY~v~~~vlna~~yGvPQ~R~R~fivg~r~~~~~~~~~~~~~~~~~-------------- 179 (335)
T PF00145_consen 114 LLSSKNGEVFKEILEELEELGYNVQWRVLNAADYGVPQNRERVFIVGIRKDLPLPPPFPIPKFDFP-------------- 179 (335)
T ss_dssp GGTGGGHHHHHHHHHHHHHTTEEEEEEEEEGGGGTSSBE-EEEEEEEEEGGG--TSSCCGTTEEC---------------
T ss_pred eeccccccccccccccccccceeehhccccHhhCCCCCceeeEEEEEECCCCCccccccccccccc--------------
Confidence 9999888899999999999999999999999999999999999999999987654 2333322211
Q ss_pred hhcCCCCccccCcccHHhhhccCCCCC
Q 003974 581 AYANNQPCQLEKGVLLSDAISDLPLVT 607 (782)
Q Consensus 581 ~~~~~~~~~~~~~~tv~dAI~dLp~~~ 607 (782)
.....++.++|.||+...
T Consensus 180 ---------~~~~~~~~~~i~dl~~~~ 197 (335)
T PF00145_consen 180 ---------EPKDPTVSDAIRDLPDEP 197 (335)
T ss_dssp ---------SSCG-SHHHHHGGGSTSC
T ss_pred ---------ccccccceeeEeeccccc
Confidence 001157889999998643
No 4
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=100.00 E-value=2e-50 Score=430.88 Aligned_cols=169 Identities=28% Similarity=0.502 Sum_probs=148.1
Q ss_pred cceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchHHHHHHHHHHHHHhhhhcccCC
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDFLSLLKEWAKLCQYFSIYDT 341 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 341 (782)
|+++||||||||+++|| +.+|++++ ||+|+|+.|++||++|||++ ++.+|+.++.
T Consensus 1 ~~v~dLFsG~Gg~~~gl----~~~G~~~v--~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~------------------ 55 (275)
T cd00315 1 LRVIDLFAGIGGFRLGL----EKAGFEIV--AANEIDKSAAETYEANFPNK-LIEGDITKID------------------ 55 (275)
T ss_pred CcEEEEccCcchHHHHH----HHcCCEEE--EEEeCCHHHHHHHHHhCCCC-CccCccccCc------------------
Confidence 58999999999999999 68998854 89999999999999999986 5555654430
Q ss_pred CCCcccccccCchhhhhhhhhhhcccCCCCCCchhHHHHHHHHHhcCCCCCCCCCcceeEEeeccCCCCCCCcccccccc
Q 003974 342 DKVPEQSLNFMSEEEEEEEEEEEENDDDANVPNEEFEVERLIAVCYGDPNKTKKPGVYFKVRWKGYGPSEDTWEPIKGLS 421 (782)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 421 (782)
..
T Consensus 56 --------------------------------~~---------------------------------------------- 57 (275)
T cd00315 56 --------------------------------EK---------------------------------------------- 57 (275)
T ss_pred --------------------------------hh----------------------------------------------
Confidence 00
Q ss_pred hhhhhhHHhHhccccccCCCCCCCccEEEecCCchhhcccCcCCCCCccccccccchHHHHHHHHHHhCCcEEEeccccc
Q 003974 422 KCKEKLKEFVTKGYRSNILPLPGDVDFICGGPPCQGVSGFNRFRNPQAALEDIKNRQLLVFMDVIEYLKPKYVLMENVVD 501 (782)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~p~~~~vDvl~ggpPCQ~fS~ag~~~~~~~~~~d~r~~L~~~~~~ii~~~~P~~~v~ENV~g 501 (782)
.+ .+++|+|+||||||+||.+|+++ +.+|+|+.|+++++++|+.++|++|+||||+|
T Consensus 58 ----------------~~---~~~~D~l~~gpPCq~fS~ag~~~----~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~g 114 (275)
T cd00315 58 ----------------DF---IPDIDLLTGGFPCQPFSIAGKRK----GFEDTRGTLFFEIIRILKEKKPKYFLLENVKG 114 (275)
T ss_pred ----------------hc---CCCCCEEEeCCCChhhhHHhhcC----CCCCchHHHHHHHHHHHHhcCCCEEEEEcCcc
Confidence 00 24799999999999999999743 35789999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHhcCCcceEEEEEecccCCCCccccEEEEEEecCCCCCC
Q 003974 502 ILKFSGGFLARYAVGRLVSMDYQTRLGIMAAGSYGLPQFRLRVFLWGARPFKKLP 556 (782)
Q Consensus 502 l~~~~~~~~~~~i~~~l~~~GY~v~~~ilnA~~yGvPQ~R~R~flig~~~~~~~p 556 (782)
|++.+++..+..+++.|+++||.+.+.+|||++||+||+|+|+|+||++++...+
T Consensus 115 ~~~~~~~~~~~~i~~~l~~~GY~~~~~~l~a~~~GvPQ~R~R~~~ia~~~~~~~~ 169 (275)
T cd00315 115 LLTHDNGNTLKVILNTLEELGYNVYWKLLNASDYGVPQNRERVFIIGIRKDLILN 169 (275)
T ss_pred hhccCchHHHHHHHHHHHhCCcEEEEEEEEHHHcCCCCCCcEEEEEEEeCCCCcc
Confidence 9998888899999999999999999999999999999999999999999987543
No 5
>PRK10458 DNA cytosine methylase; Provisional
Probab=100.00 E-value=2.5e-44 Score=404.68 Aligned_cols=192 Identities=24% Similarity=0.352 Sum_probs=152.3
Q ss_pred CCCCCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC---CCCcccccchHHHHHHHHHHHHHh
Q 003974 257 IGQPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH---PETKVRNEAADDFLSLLKEWAKLC 333 (782)
Q Consensus 257 ~~~~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~---p~~~~~~~d~~~~~~~~~~~~~~~ 333 (782)
+...+++++|||||||||++|| +.+|+++ +||+|+|+.|++||++|| |++.++++||.++..
T Consensus 84 ~~~~~~~~iDLFsGiGGl~lGf----e~aG~~~--v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~--------- 148 (467)
T PRK10458 84 HPHYAFRFIDLFAGIGGIRRGF----EAIGGQC--VFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDITL--------- 148 (467)
T ss_pred CcCCCceEEEeCcCccHHHHHH----HHcCCEE--EEEEechHHHHHHHHHHcCCCCccceeccChhhCcc---------
Confidence 3445799999999999999999 6899985 499999999999999998 566777888766410
Q ss_pred hhhcccCCCCCcccccccCchhhhhhhhhhhcccCCCCCCchhHHHHHHHHHhcCCCCCCCCCcceeEEeeccCCCCCCC
Q 003974 334 QYFSIYDTDKVPEQSLNFMSEEEEEEEEEEEENDDDANVPNEEFEVERLIAVCYGDPNKTKKPGVYFKVRWKGYGPSEDT 413 (782)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~ 413 (782)
+ + ..+++.++.
T Consensus 149 ---~------------~------------------~~~~~~~~~------------------------------------ 159 (467)
T PRK10458 149 ---S------------H------------------KEGVSDEEA------------------------------------ 159 (467)
T ss_pred ---c------------c------------------ccccchhhh------------------------------------
Confidence 0 0 000010100
Q ss_pred cccccccchhhhhhHHhHhccccccCCCCCCCccEEEecCCchhhcccCcCCCC----Cccc-cccccchHHHHHHHHHH
Q 003974 414 WEPIKGLSKCKEKLKEFVTKGYRSNILPLPGDVDFICGGPPCQGVSGFNRFRNP----QAAL-EDIKNRQLLVFMDVIEY 488 (782)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~vDvl~ggpPCQ~fS~ag~~~~~----~~~~-~d~r~~L~~~~~~ii~~ 488 (782)
...+. . ..+++|||+||||||+||.||+.+.. ..+. .|+|+.||++++++|+.
T Consensus 160 --------------~~~~~-----~---~~p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf~~~~rii~~ 217 (467)
T PRK10458 160 --------------AEHIR-----Q---HIPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLFFDVARIIDA 217 (467)
T ss_pred --------------hhhhh-----c---cCCCCCEEEEcCCCCccchhcccccccccccccccCCccccHHHHHHHHHHH
Confidence 00000 0 12479999999999999999974321 1123 47899999999999999
Q ss_pred hCCcEEEeccccccccccccchHHHHHHHHhcCCcceE---------EEEEecccCCCCccccEEEEEEecCCCCC
Q 003974 489 LKPKYVLMENVVDILKFSGGFLARYAVGRLVSMDYQTR---------LGIMAAGSYGLPQFRLRVFLWGARPFKKL 555 (782)
Q Consensus 489 ~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~---------~~ilnA~~yGvPQ~R~R~flig~~~~~~~ 555 (782)
.+|++||||||+||++++++..++.++..|.++||.+. +.+|||.+| |||+|+|+||||++++..+
T Consensus 218 ~kPk~fvlENV~gl~s~~~g~~f~~i~~~L~~lGY~v~~~~~~g~~~~~vlna~~f-VPQ~R~RvfiVg~r~~~~~ 292 (467)
T PRK10458 218 KRPAIFVLENVKNLKSHDKGKTFRIIMQTLDELGYDVADAEDNGPDDPKIIDGKHF-LPQHRERIVLVGFRRDLNL 292 (467)
T ss_pred hCCCEEEEeCcHhhhcccccHHHHHHHHHHHHcCCeEEeccccCcccceEeehhhC-CCccCcEEEEEEEeCCccc
Confidence 99999999999999999989999999999999999995 689999999 9999999999999988654
No 6
>cd04716 BAH_plantDCM_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.96 E-value=1.4e-29 Score=235.98 Aligned_cols=121 Identities=51% Similarity=0.943 Sum_probs=114.7
Q ss_pred CEEEeeCCEEEEeeCCCCccEEEEEeEEeecCCCceEEEEEEEEeccccccccccccCCCCeEEEeCCcCCcccccccee
Q 003974 113 GCLYNLGDDAYVKAEEGAVDYIARIVELFESVDGEPYFKARWFYRAEDTVIKDLACLVDRKRVFLSDVEDDNPLNCIVSK 192 (782)
Q Consensus 113 G~~y~vGD~V~v~~~~~~~~~Ia~I~~m~e~~~g~~~v~v~WfyRp~dtv~~~~~~~~~~rELFlS~~~d~~~~~~I~gk 192 (782)
|+.|++||+|||.+++++++|||+|++||++.+|..+|+|+|||||+||+++.+...++++|||+|+++|++|++||+||
T Consensus 1 g~~~~lgD~V~v~~~~~~~~yi~rI~~i~e~~~g~~~~~v~WyyRpeet~~~r~~~~~~~rEvFlS~~~D~~pl~~I~~K 80 (122)
T cd04716 1 GITYNLGDDAYVQGGEGEEPFICKITEFFEGTDGKTYFTAQWFYRAEDTVIERQATNHDKKRVFYSEIKNDNPLDCLISK 80 (122)
T ss_pred CcEEEcCCEEEEECCCCCCCEEEEEEEEEEcCCCceEEEEEEEEcHHHhccccccccCCCceEEEecccCccchhheeee
Confidence 67899999999999988999999999999999999999999999999998877677899999999999999999999999
Q ss_pred eEEEeeCCcchhhhhhcCCCCCceeeeccccCCCceeeecC
Q 003974 193 AKIAEVATNMDLEAKQKNIPPCDLYYDMKYTLPHLTFLNIN 233 (782)
Q Consensus 193 c~V~~~~~~~~~~~~~~~~~~~~ffy~~~Y~~~~~~F~~lp 233 (782)
|+|+.+++...++.+......|+|||++.|+..+++|.+||
T Consensus 81 c~V~~~~~~~~~~~~~~~~~~~df~c~~~Y~~~~~tF~~~~ 121 (122)
T cd04716 81 VKILQVPPNVGTKRKKPNSEKCDYYYDMEYCVPYSTFQTLR 121 (122)
T ss_pred eEEEEeCCCCCcccccccCCCceEEEeeEeccchhheEeCC
Confidence 99999999988877778889999999999999999999998
No 7
>cd04708 BAH_plantDCM_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.95 E-value=2.3e-28 Score=243.50 Aligned_cols=163 Identities=19% Similarity=0.331 Sum_probs=128.5
Q ss_pred EEECCEEEeeCCEEEEeeC------------------CCCccEEEEEeEEeecCCC------ceEEEEEEEEeccccccc
Q 003974 109 ASVDGCLYNLGDDAYVKAE------------------EGAVDYIARIVELFESVDG------EPYFKARWFYRAEDTVIK 164 (782)
Q Consensus 109 ~~v~G~~y~vGD~V~v~~~------------------~~~~~~Ia~I~~m~e~~~g------~~~v~v~WfyRp~dtv~~ 164 (782)
|+++|++|+|||+|||.++ +..+++||+|.+|++.+++ ..+|+|||||||+||..
T Consensus 1 f~~~Gv~Y~vgD~VYv~p~~f~~~~~~~~~~~~G~N~~~~p~~I~qI~ei~~~k~~~~~~~~~~~vrVrwFYRPEdt~~- 79 (202)
T cd04708 1 FVYDGVTYSVGDFLYVSPDAFAEEERERATFKAGRNVGLKAFVVCQVLEIVVEKESKQADVASTQVKVRRFYRPEDVSP- 79 (202)
T ss_pred CcCCCEEEecCCeEEECcccccccccccccccccccCCCCCcEEEEEEEEEecccCCCCCCcceEEEEEEEechhhcCc-
Confidence 4678999999999999999 4458899999999987655 57999999999999954
Q ss_pred cccccCCCCeEEEeCCcCCccccccceeeEEEeeCCcchhhhhhcCCCCCceeeeccccCCCceeeecCCcCC----CCC
Q 003974 165 DLACLVDRKRVFLSDVEDDNPLNCIVSKAKIAEVATNMDLEAKQKNIPPCDLYYDMKYTLPHLTFLNINNESN----RRD 240 (782)
Q Consensus 165 ~~~~~~~~rELFlS~~~d~~~~~~I~gkc~V~~~~~~~~~~~~~~~~~~~~ffy~~~Y~~~~~~F~~lp~e~~----~~~ 240 (782)
.....++.+|||+|++.+++|+++|.|||.|++..+...+. .....++.|||...|++.+++|+.||+... ..+
T Consensus 80 ~~~y~sd~rely~Sde~~~~~~~~I~GKC~V~~~~d~~~~~--~~~~~~~~Ffc~~~Yd~~tg~f~~lP~~~~~~~~~~~ 157 (202)
T cd04708 80 EKAYASDIREVYYSEDTLTVPVEAVEGKCEVRKKSDLPDSD--APVIFEHVFFCELLYDPAKGSLKQLPPNIKEEAYSTG 157 (202)
T ss_pred ccceecCceeEEEeccceeechhHcceEEEEEecCcchhhh--ccccCCCceEEEEEEcCCCCccCCCCchhcccccccc
Confidence 44567799999999999999999999999999998775553 234568999999999999999999998776 111
Q ss_pred C-CCCC----cc-----ccCCC-CCCCCCCCCcceeccccccchh
Q 003974 241 S-DASS----TI-----SSETG-SNSPIGQPEMSLLDLYSGCGAM 274 (782)
Q Consensus 241 s-~~~~----~~-----~~~~~-~~~~~~~~~~~~ldlf~G~Gg~ 274 (782)
. +..+ .+ ..+.. .....+..+|..||+||||||+
T Consensus 158 ~~~~~~~k~kgkgk~~~~~~~~~~~~~~~~~~LaTLDIFAGCGGL 202 (202)
T cd04708 158 ASDSALRKRKGKGKGDSESDSEAPVKAPKENRLATLDIFAGCGGL 202 (202)
T ss_pred ccccccccCCCCCcCccccccccccccccccccceeeeecccCCC
Confidence 1 1111 00 01111 1122566789999999999986
No 8
>cd04760 BAH_Dnmt1_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.94 E-value=2.5e-27 Score=219.21 Aligned_cols=115 Identities=28% Similarity=0.376 Sum_probs=103.5
Q ss_pred CEEEeeCCEEEEeeCC-CCccEEEEEeEEeecCCCceEEEEEEEEeccccccccccccCCCCeEEEeCCcCCccccccce
Q 003974 113 GCLYNLGDDAYVKAEE-GAVDYIARIVELFESVDGEPYFKARWFYRAEDTVIKDLACLVDRKRVFLSDVEDDNPLNCIVS 191 (782)
Q Consensus 113 G~~y~vGD~V~v~~~~-~~~~~Ia~I~~m~e~~~g~~~v~v~WfyRp~dtv~~~~~~~~~~rELFlS~~~d~~~~~~I~g 191 (782)
|.+|+|||||+|++++ ++++|||+|++||++.+|.+||||||||||+||++|. .++++|||+|++|+++++++|.+
T Consensus 1 g~~i~vGD~V~v~~~~~~~p~~I~rV~~mfe~~~g~k~~h~rWf~Rg~dTVlG~---~~~~kEvFlsd~c~d~~l~~I~~ 77 (124)
T cd04760 1 GEELEAGDCVSVKPDDPTKPLYIARVTYMWKDSIGGKMFHAHWFCRGSDTVLGE---TSDPLELFLVDECEDMALSSIHG 77 (124)
T ss_pred CCEEecCCEEEEecCCCCCCcEEEEEhhheecCCCCcEEEEEEEEECCcccccc---cCCCcEEEeecccCCcchHHhee
Confidence 5789999999999975 8899999999999999999999999999999999998 79999999999999999999999
Q ss_pred eeEEEeeCCcc--------hhhhhhcCCCCCceeeeccccCCCceee
Q 003974 192 KAKIAEVATNM--------DLEAKQKNIPPCDLYYDMKYTLPHLTFL 230 (782)
Q Consensus 192 kc~V~~~~~~~--------~~~~~~~~~~~~~ffy~~~Y~~~~~~F~ 230 (782)
||+|++++|.. ..+......+..+|||++.|+|+.++|.
T Consensus 78 Kv~V~~~~p~~~w~~~~g~~~~~~~~~ddg~tffyq~~yd~~~arf~ 124 (124)
T cd04760 78 KVNVIYKAPSENWSMEGGMDEEDEIFEDDGKTFFYQKWYDPECARFE 124 (124)
T ss_pred eeEEEEeCCCcchhhhcCCCCccccccCCCCeEEEEEeeChhhhccC
Confidence 99999999863 3333344457789999999999999884
No 9
>cd04713 BAH_plant_3 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.93 E-value=2.5e-25 Score=214.89 Aligned_cols=130 Identities=22% Similarity=0.391 Sum_probs=114.4
Q ss_pred cccceeeEEEECCEEEeeCCEEEEeeCCCCccEEEEEeEEeecCCCceEEEEEEEEecccccccccc--ccCCCCeEEEe
Q 003974 101 QARCHYTQASVDGCLYNLGDDAYVKAEEGAVDYIARIVELFESVDGEPYFKARWFYRAEDTVIKDLA--CLVDRKRVFLS 178 (782)
Q Consensus 101 ~~r~~Y~~~~v~G~~y~vGD~V~v~~~~~~~~~Ia~I~~m~e~~~g~~~v~v~WfyRp~dtv~~~~~--~~~~~rELFlS 178 (782)
.+++||+++.++|++|+|||+|||.++++.+||||+|++||+..+|.++|+|+|||||+||...... ..++++|||+|
T Consensus 6 ~~~~~y~s~~~dg~~y~vgD~Vlv~~~~~~~pyI~~I~~i~~~~~~~~~v~V~WFyRpeEi~~~~~~~~~~~~~~ElF~S 85 (146)
T cd04713 6 KKKCHYTSFEKDGNKYRLEDCVLLVPEDDQKPYIAIIKDIYKQEEGSLKLEVQWLYRPEEIEKKKGGNWKAEDPRELFYS 85 (146)
T ss_pred cceeeeeeEEECCEEEECCCEEEEeCCCCCCCEEEEEEEEEEcCCCCEEEEEEeeECHHHhccccccccccCCCCeEEEe
Confidence 4688999999999999999999999987789999999999999889999999999999999743322 24578999999
Q ss_pred CCcCCccccccceeeEEEeeCCcchhhhhhcCCCCCceeeeccccCCCceeeecC
Q 003974 179 DVEDDNPLNCIVSKAKIAEVATNMDLEAKQKNIPPCDLYYDMKYTLPHLTFLNIN 233 (782)
Q Consensus 179 ~~~d~~~~~~I~gkc~V~~~~~~~~~~~~~~~~~~~~ffy~~~Y~~~~~~F~~lp 233 (782)
.+.|++++++|+|||.|+..+++.+++.. .....|||+..||+..++|..|.
T Consensus 86 ~~~d~~~~~~I~gkc~V~~~~~~~~~~~~---~~~~~F~cr~~yD~~~~~~~~~~ 137 (146)
T cd04713 86 FHRDEVPAESVLHPCKVAFVPKGKQIPLR---KGHSGFIVRRVYDNVNKKLWKLT 137 (146)
T ss_pred CCCCcCCHHHCcceeEEEECCccccCCcc---CCCCeEEEEEEEcCCCCcEeecc
Confidence 99999999999999999998877655432 24568999999999999999987
No 10
>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]
Probab=99.92 E-value=3.7e-26 Score=227.93 Aligned_cols=166 Identities=22% Similarity=0.341 Sum_probs=138.3
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCccc-ccchHHHHHHHHHHHHHhhhhcc
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVR-NEAADDFLSLLKEWAKLCQYFSI 338 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~-~~d~~~~~~~~~~~~~~~~~~~~ 338 (782)
++++|++||||.|||-..| +.|.+...++.|+|+|+.|.++|.+| |++.+. ..||+.
T Consensus 2 ~pLrVlelysg~ggmhyal----~~a~ipaqiVaAiDvNtvANevY~~N-~h~~L~k~~~I~~----------------- 59 (338)
T KOG0919|consen 2 MPLRVLELYSGHGGMHYAL----EDAQIPAQIVAAIDVNTVANEVYAHN-YHSNLVKTRNIQS----------------- 59 (338)
T ss_pred CceehhhhhhccchhhhhH----hhhcCchhhEEEEecchhHHHHHhcC-cccchhhccccce-----------------
Confidence 6799999999999999999 56777766778999999999999999 444322 222222
Q ss_pred cCCCCCcccccccCchhhhhhhhhhhcccCCCCCCchhHHHHHHHHHhcCCCCCCCCCcceeEEeeccCCCCCCCccccc
Q 003974 339 YDTDKVPEQSLNFMSEEEEEEEEEEEENDDDANVPNEEFEVERLIAVCYGDPNKTKKPGVYFKVRWKGYGPSEDTWEPIK 418 (782)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 418 (782)
++.++|+
T Consensus 60 ---------------------------------lt~kefd---------------------------------------- 66 (338)
T KOG0919|consen 60 ---------------------------------LTVKEFD---------------------------------------- 66 (338)
T ss_pred ---------------------------------eeHhhhh----------------------------------------
Confidence 1333331
Q ss_pred ccchhhhhhHHhHhccccccCCCCCCCccEEEecCCchhhcccCcCCCCCccccccccchHHHHHHHHHHhC--CcEEEe
Q 003974 419 GLSKCKEKLKEFVTKGYRSNILPLPGDVDFICGGPPCQGVSGFNRFRNPQAALEDIKNRQLLVFMDVIEYLK--PKYVLM 496 (782)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~p~~~~vDvl~ggpPCQ~fS~ag~~~~~~~~~~d~r~~L~~~~~~ii~~~~--P~~~v~ 496 (782)
.-+.|++..+||||+|...|+++ ...|+|...|.+++.++-+++ |+|++|
T Consensus 67 ------------------------~l~~~m~lMSPpCQPfTRiG~q~----D~~D~Rs~aflhil~~lP~~q~LPeYIL~ 118 (338)
T KOG0919|consen 67 ------------------------KLQANMLLMSPPCQPFTRIGLQR----DTEDKRSDAFLHILGLLPECQELPEYILM 118 (338)
T ss_pred ------------------------hcccceEeeCCCCCchhhhcccc----cccCchhHHHHHHHhhhhhhhhhhHHHHH
Confidence 13789999999999999999754 468999999999999999988 999999
Q ss_pred ccccccccccccchHHHHHHHHhcCCcceEEEEEecccCCCCccccEEEEEEecC
Q 003974 497 ENVVDILKFSGGFLARYAVGRLVSMDYQTRLGIMAAGSYGLPQFRLRVFLWGARP 551 (782)
Q Consensus 497 ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~ilnA~~yGvPQ~R~R~flig~~~ 551 (782)
|||.||-.+. ..+.+++.|+..||+++..+|....||+|.+|-|.|.||...
T Consensus 119 ENVkGFE~S~---ar~~~i~~lencGf~~~EfiLsPtqfniPNsR~Ryy~iArl~ 170 (338)
T KOG0919|consen 119 ENVKGFESSQ---ARNQFIESLENCGFHWREFILSPTQFNIPNSRYRYYCIARLG 170 (338)
T ss_pred hhcccchhhh---HHHHHHHHHHhcCchhhheeccccccCCCCcchheeehhhhC
Confidence 9999998765 466788999999999999999999999999999999998754
No 11
>cd04712 BAH_DCM_I BAH, or Bromo Adjacent Homology domain, as present in DNA (Cytosine-5)-methyltransferases (DCM) 1. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.91 E-value=1.9e-24 Score=204.42 Aligned_cols=113 Identities=20% Similarity=0.288 Sum_probs=102.7
Q ss_pred CCEEEeeCCEEEEeeCCC-----------CccEEEEEeEEeecCCCceEEEEEEEEeccccccccccccCCCCeEEEeCC
Q 003974 112 DGCLYNLGDDAYVKAEEG-----------AVDYIARIVELFESVDGEPYFKARWFYRAEDTVIKDLACLVDRKRVFLSDV 180 (782)
Q Consensus 112 ~G~~y~vGD~V~v~~~~~-----------~~~~Ia~I~~m~e~~~g~~~v~v~WfyRp~dtv~~~~~~~~~~rELFlS~~ 180 (782)
+|..|+|||+|+|.+++. .++||++|++||++.+|.+|||++|||||+||+++. .+++||||||||
T Consensus 2 ~~~~i~vGD~V~v~~d~~~~~~~~~~~~~~~~~i~~V~~~~e~~~g~~~~h~~W~yrp~eTv~g~---~~~~~ElFLSd~ 78 (130)
T cd04712 2 HGLTIRVGDVVSVERDDADSTTKWNDDHRWLPLVQFVEYMKKGSDGSKMFHGRWLYRGCDTVLGN---YANERELFLTNE 78 (130)
T ss_pred CCCEEeCCCEEEEcCCCCCccccccccccccceEEEEEEeeecCCCceEEEEEEEEcchhccccc---cCCCceEEEecc
Confidence 578999999999999873 389999999999999999999999999999999987 999999999999
Q ss_pred cCCcccc----ccceeeEEEeeCCcchhhhhhcCCCCCceeeeccccCCCceeeecC
Q 003974 181 EDDNPLN----CIVSKAKIAEVATNMDLEAKQKNIPPCDLYYDMKYTLPHLTFLNIN 233 (782)
Q Consensus 181 ~d~~~~~----~I~gkc~V~~~~~~~~~~~~~~~~~~~~ffy~~~Y~~~~~~F~~lp 233 (782)
|++++++ +|++||.|.+...... ...+..|||++.|++++++|.+||
T Consensus 79 c~~~~~~~~~~~I~~k~~V~~~~~~~~------~~~~~~F~r~syy~~e~~~F~~l~ 129 (130)
T cd04712 79 CTCLELDLLSTEIKGVHKVDWSGTPWG------KGLPEFFVRQSYYWPERGAFTSLK 129 (130)
T ss_pred ccccccccccceeEEEEEEEEecCcCC------cCCCCEEEEEEEECccCCceEcCC
Confidence 9999999 9999999999875432 346677888889999999999998
No 12
>cd04714 BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.90 E-value=1.4e-23 Score=196.82 Aligned_cols=115 Identities=23% Similarity=0.312 Sum_probs=100.2
Q ss_pred CEEEeeCCEEEEeeCC-CCccEEEEEeEEeecCCCceEEEEEEEEeccccccccccccCCCCeEEEeCCcCCccccccce
Q 003974 113 GCLYNLGDDAYVKAEE-GAVDYIARIVELFESVDGEPYFKARWFYRAEDTVIKDLACLVDRKRVFLSDVEDDNPLNCIVS 191 (782)
Q Consensus 113 G~~y~vGD~V~v~~~~-~~~~~Ia~I~~m~e~~~g~~~v~v~WfyRp~dtv~~~~~~~~~~rELFlS~~~d~~~~~~I~g 191 (782)
|++|+|||+|||.+++ ..+||||+|++||++.+|.++|+|+|||||+||+.+. ...++++|||+|++.|++|+++|.|
T Consensus 1 ~~~~~vGD~V~v~~~~~~~~pyIgrI~~i~e~~~g~~~~~v~WfyrPeEt~~~~-~~~~~~~EvF~S~~~d~~~~~~I~g 79 (121)
T cd04714 1 KEIIRVGDCVLFKSPGRPSLPYVARIESLWEDPEGNMVVRVKWYYRPEETKGGR-KPNHGEKELFASDHQDENSVQTIEH 79 (121)
T ss_pred CCEEEcCCEEEEeCCCCCCCCEEEEEEEEEEcCCCCEEEEEEEEEcHHHccCcc-cccCCCCceEecCCcccccHHHhCc
Confidence 5789999999999986 4889999999999999999999999999999997654 5568999999999999999999999
Q ss_pred eeEEEeeCCcchhhhhh--cCCCCCceeeeccccCCCce
Q 003974 192 KAKIAEVATNMDLEAKQ--KNIPPCDLYYDMKYTLPHLT 228 (782)
Q Consensus 192 kc~V~~~~~~~~~~~~~--~~~~~~~ffy~~~Y~~~~~~ 228 (782)
||.|+..+.+.+..... .......|+|.+.||+.+.-
T Consensus 80 kc~V~~~~ey~~~~~~~~~~~~~~d~~~Ce~~yn~~~~~ 118 (121)
T cd04714 80 KCYVLTFAEYERLARVKKKPQDGVDFYYCAGTYNPDTGM 118 (121)
T ss_pred ccEEEehhHheecccccCCCCcCCCEEEEeccCCCCcCc
Confidence 99999999887765432 12466789999999998643
No 13
>cd04715 BAH_Orc1p_like BAH, or Bromo Adjacent Homology domain, as present in the Schizosaccharomyces pombe homolog of Saccharomyces cerevisiae Orc1p and similar proteins. Orc1 is part of the Yeast Sir1-origin recognition complex, the Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.89 E-value=4.2e-23 Score=200.98 Aligned_cols=110 Identities=23% Similarity=0.372 Sum_probs=95.9
Q ss_pred eEcCCCcchhhhhccCccchhchhhHHHhhcccceeeEEEECCEEEeeCCEEEEeeCCCCccEEEEEeEEeecCC--Cce
Q 003974 71 FFVSPPVSADEALKRYPDRYKALNEEEEVLQARCHYTQASVDGCLYNLGDDAYVKAEEGAVDYIARIVELFESVD--GEP 148 (782)
Q Consensus 71 ~w~G~p~~~~~~~~~w~~ry~~~~~~~~~~~~r~~Y~~~~v~G~~y~vGD~V~v~~~~~~~~~Ia~I~~m~e~~~--g~~ 148 (782)
.|.|+|.... +++||+++.++|+.|+|||||||.++ +.++|||+|++||++.+ |.+
T Consensus 6 ~~~g~~~~~~---------------------~~~~Y~s~~~~g~~y~lGD~Vlv~s~-~~~~yIgkI~~iwe~~~~~g~~ 63 (159)
T cd04715 6 VKRGEGGKKK---------------------DGQFYRSFTYDGVEYRLYDDVYVHNG-DSEPYIGKIIKIYETAIDSGKK 63 (159)
T ss_pred eecccccccC---------------------CceEEEEEEECCEEEeCCCEEEEeCC-CCCCEEEEEEEEEEcCCcCCce
Confidence 4788887766 47799999999999999999999986 48999999999999876 889
Q ss_pred EEEEEEEEecccccccccc-ccCCCCeEEEeCCc-----CCccccccceeeEEEeeCCcc
Q 003974 149 YFKARWFYRAEDTVIKDLA-CLVDRKRVFLSDVE-----DDNPLNCIVSKAKIAEVATNM 202 (782)
Q Consensus 149 ~v~v~WfyRp~dtv~~~~~-~~~~~rELFlS~~~-----d~~~~~~I~gkc~V~~~~~~~ 202 (782)
+++|+|||||+||+.+..+ ..+.++|||+|+|. +++|+++|+|||.|+..+.+.
T Consensus 64 ~~~v~WfyRp~E~~~~~~~~~~~~~nEvFlS~~~d~~~~~~n~l~sI~gKC~Vl~~~ey~ 123 (159)
T cd04715 64 KVKVIWFFRPSEIRMELKGEPKRHINEVFLACGRGEGLANINLLESIIGKCNVVCISEDF 123 (159)
T ss_pred EEEEEeeeCHHHhccccccCcccCCCcEEEecCcCccccccCcHHHccceeEEEEehHhh
Confidence 9999999999999754332 36789999999886 679999999999999999654
No 14
>cd04710 BAH_fungalPHD BAH, or Bromo Adjacent Homology domain, as present in fungal proteins containing PHD domains. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.89 E-value=4.3e-23 Score=195.90 Aligned_cols=117 Identities=23% Similarity=0.392 Sum_probs=101.3
Q ss_pred EEECCEEEeeCCEEEEeeCC-CCccEEEEEeEEeecCCC------------ceEEEEEEEEeccccccccccccCCCCeE
Q 003974 109 ASVDGCLYNLGDDAYVKAEE-GAVDYIARIVELFESVDG------------EPYFKARWFYRAEDTVIKDLACLVDRKRV 175 (782)
Q Consensus 109 ~~v~G~~y~vGD~V~v~~~~-~~~~~Ia~I~~m~e~~~g------------~~~v~v~WfyRp~dtv~~~~~~~~~~rEL 175 (782)
+..+|.+|++||+|||.+++ ++|+|||+|++|+..+++ ..+|+|+|||||+|+..+. .++.|||
T Consensus 5 ~~~~g~~~~vgD~Vyv~~~~~~ePyyIgrI~e~~~~~~~~~~~~~~~~~~~~~~vrV~wfYRp~Di~~~~---~~d~rel 81 (135)
T cd04710 5 VLKNGELLKVNDHIYMSSEPPGEPYYIGRIMEFVPKHEFPSGIHARVFPASYFQVRLNWYYRPRDISRRV---VADSRLL 81 (135)
T ss_pred EccCCeEEeCCCEEEEecCCCCCCCEEEEEEEEEecCCCCccccccccCCCcEEEEEEEEeCHHHcCCcc---cCCceEE
Confidence 45689999999999999986 899999999999986432 3589999999999985433 6899999
Q ss_pred EEeCCcCCccccccceeeEEEeeCCcchhhhhhcCCCCCceeeeccccCCCceee
Q 003974 176 FLSDVEDDNPLNCIVSKAKIAEVATNMDLEAKQKNIPPCDLYYDMKYTLPHLTFL 230 (782)
Q Consensus 176 FlS~~~d~~~~~~I~gkc~V~~~~~~~~~~~~~~~~~~~~ffy~~~Y~~~~~~F~ 230 (782)
|+|+|+|.+|+++|+|||.|.+..+..++++ ....++.|||...||+.+++|.
T Consensus 82 f~S~h~d~~p~~si~gKC~V~~~~di~~l~~--~~~~~~~Fyf~~lyD~~~~r~~ 134 (135)
T cd04710 82 YASMHSDICPIGSVRGKCTVRHRDQIPDLEE--YKKRPNHFYFDQLFDRYILRYY 134 (135)
T ss_pred EEEeeEeeechHHEEeEEEEEEecccchhhh--hccCCCEEEEEeeeCcchhhcc
Confidence 9999999999999999999999998766543 3446899999999999999986
No 15
>cd04370 BAH BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p), where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p), confirming the initial hypothesis that BAH plays a role in protein-protein interactions.
Probab=99.89 E-value=4.6e-23 Score=192.94 Aligned_cols=120 Identities=33% Similarity=0.575 Sum_probs=105.8
Q ss_pred CEEEeeCCEEEEeeCCC---CccEEEEEeEEeecCCCceEEEEEEEEeccccccccccccCCCCeEEEeCCcCCcccccc
Q 003974 113 GCLYNLGDDAYVKAEEG---AVDYIARIVELFESVDGEPYFKARWFYRAEDTVIKDLACLVDRKRVFLSDVEDDNPLNCI 189 (782)
Q Consensus 113 G~~y~vGD~V~v~~~~~---~~~~Ia~I~~m~e~~~g~~~v~v~WfyRp~dtv~~~~~~~~~~rELFlS~~~d~~~~~~I 189 (782)
|.+|++||+|||.+++. +++|||+|++||++.+|.++++|+|||||+||+.+. ...+++||||+|++++++++++|
T Consensus 1 g~~y~vgd~V~v~~~~~~~~~~~~i~~I~~i~~~~~~~~~~~v~wf~rp~e~~~~~-~~~~~~~Elf~s~~~~~i~v~~I 79 (123)
T cd04370 1 GITYEVGDSVYVEPDDSIKSDPPYIARIEELWEDTNGSKQVKVRWFYRPEETPKGL-SPFALRRELFLSDHLDEIPVESI 79 (123)
T ss_pred CCEEecCCEEEEecCCcCCCCCCEEEEEeeeeECCCCCEEEEEEEEEchhHhcccc-ccccccceeEEecCccccCHHHh
Confidence 67899999999999875 889999999999999999999999999999997654 33588999999999999999999
Q ss_pred ceeeEEEeeCCcchhhhhhcCCCCCceeeeccccCCCceeeecC
Q 003974 190 VSKAKIAEVATNMDLEAKQKNIPPCDLYYDMKYTLPHLTFLNIN 233 (782)
Q Consensus 190 ~gkc~V~~~~~~~~~~~~~~~~~~~~ffy~~~Y~~~~~~F~~lp 233 (782)
+|||.|++.+++.+..........+.|||+..|++.+++|..+.
T Consensus 80 ~gkc~V~~~~~~~~~~~~~~~~~~~~f~~r~~yd~~~~~fk~~~ 123 (123)
T cd04370 80 IGKCKVLFVSEFEGLKQRPNKIDTDDFFCRLAYDPTTKEFKALE 123 (123)
T ss_pred ccccEEEechHhhccccccccCCCCeEEEEEEECcCcceEEeCC
Confidence 99999999997765533345567789999999999999998763
No 16
>PF01426 BAH: BAH domain; InterPro: IPR001025 The BAH (bromo-adjacent homology) family contains proteins such as eukaryotic DNA (cytosine-5) methyltransferases IPR001525 from INTERPRO, the origin recognition complex 1 (Orc1) proteins, as well as several proteins involved in transcriptional regulation. The BAH domain appears to act as a protein-protein interaction module specialised in gene silencing, as suggested for example by its interaction within yeast Orc1p with the silent information regulator Sir1p. The BAH module might therefore play an important role by linking DNA methylation, replication and transcriptional regulation [].; GO: 0003677 DNA binding; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 3SWR_A 3PTA_A 1M4Z_A 1ZBX_A ....
Probab=99.89 E-value=3.7e-23 Score=193.10 Aligned_cols=116 Identities=31% Similarity=0.546 Sum_probs=101.5
Q ss_pred EEEeeCCEEEEeeCC-CCccEEEEEeEEeecCCCc--eEEEEEEEEeccccccccccccCCCCeEEEeCCcCCccccccc
Q 003974 114 CLYNLGDDAYVKAEE-GAVDYIARIVELFESVDGE--PYFKARWFYRAEDTVIKDLACLVDRKRVFLSDVEDDNPLNCIV 190 (782)
Q Consensus 114 ~~y~vGD~V~v~~~~-~~~~~Ia~I~~m~e~~~g~--~~v~v~WfyRp~dtv~~~~~~~~~~rELFlS~~~d~~~~~~I~ 190 (782)
++|++||||||.+++ ..++|||+|++||++.++. +|++|+|||||+||..+ ....+||||+|++++++|+++|+
T Consensus 1 ~~~~vGD~V~v~~~~~~~~~~v~~I~~i~~~~~~~~~~~~~v~Wf~rp~d~~~~---~~~~~~Elf~s~~~~~~~~~~I~ 77 (119)
T PF01426_consen 1 VTYKVGDFVYVKPDDPPEPPYVARIEEIWEDKDGNKEKMVKVRWFYRPEDTSLG---KTFSPRELFLSDHCDDIPVESIR 77 (119)
T ss_dssp EEEETTSEEEEECTSTTSEEEEEEEEEEEEETTTSEEEEEEEEEEEEGGGSTTG---GHSCTTEEEEEEEEEEEEGGGEE
T ss_pred CEEeCCCEEEEeCCCCCCCCEEEEEEEEEcCCCCCEEEEEEEEEeECccccccc---ccCCCCEEEEECcEeEEehhhEE
Confidence 479999999999997 7899999999999998887 99999999999999333 35667999999999999999999
Q ss_pred eeeEEEeeCCcchhhhhhcCCCCCceeeeccccCCCceeeecC
Q 003974 191 SKAKIAEVATNMDLEAKQKNIPPCDLYYDMKYTLPHLTFLNIN 233 (782)
Q Consensus 191 gkc~V~~~~~~~~~~~~~~~~~~~~ffy~~~Y~~~~~~F~~lp 233 (782)
|||.|++..++.+....... ....|||++.|++.+++|.++|
T Consensus 78 gkc~V~~~~~~~~~~~~~~~-~~~~F~cr~~yd~~~~~f~~~~ 119 (119)
T PF01426_consen 78 GKCNVLHLEDYEQARPYGKE-EPDTFFCRYAYDPQKKRFKKLP 119 (119)
T ss_dssp EEEEEEEHHHHTTGCCHCHH-TTTEEEEEEEEETTTTEEEE-S
T ss_pred eeeEEEECCccccccccccC-CCCEEEEEEEEeCCcCEEeCCC
Confidence 99999999877665443323 7789999999999999999986
No 17
>cd04709 BAH_MTA BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.88 E-value=8.3e-23 Score=199.45 Aligned_cols=127 Identities=20% Similarity=0.251 Sum_probs=109.3
Q ss_pred CEEEeeCCEEEEeeCCCCccEEEEEeEEeecCCCceEEEEEEEEecccccccc---------------------ccccCC
Q 003974 113 GCLYNLGDDAYVKAEEGAVDYIARIVELFESVDGEPYFKARWFYRAEDTVIKD---------------------LACLVD 171 (782)
Q Consensus 113 G~~y~vGD~V~v~~~~~~~~~Ia~I~~m~e~~~g~~~v~v~WfyRp~dtv~~~---------------------~~~~~~ 171 (782)
+.+|+|||||||+++++.|++||+|++||++++|..+|+|+|||||+|++... .....+
T Consensus 1 ~~~yrvGD~Vy~~~~~~~Py~I~rI~e~~~~~~~~~~vkV~wfYRp~DI~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd04709 1 ANMYRVGDYVYFESSPNNPYLIRRIEELNKTARGHVEAKVVCYYRRRDIPDSLYQLADQHRRELEEKSDDLTPKQRHQLR 80 (164)
T ss_pred CcEEecCCEEEEECCCCCCCEEEEEEEEEeCCCCCEEEEEEEEEChhHccchhhhhcccccccccccccccchhhhhccC
Confidence 35899999999999987888999999999999999999999999999985321 123358
Q ss_pred CCeEEEeCCcCCccccccceeeEEEeeCCcchhhhhhcCCCCCceeeeccccCCCceeeecCCcCCCCCC
Q 003974 172 RKRVFLSDVEDDNPLNCIVSKAKIAEVATNMDLEAKQKNIPPCDLYYDMKYTLPHLTFLNINNESNRRDS 241 (782)
Q Consensus 172 ~rELFlS~~~d~~~~~~I~gkc~V~~~~~~~~~~~~~~~~~~~~ffy~~~Y~~~~~~F~~lp~e~~~~~s 241 (782)
.||||+|+|.+.+|+++|+|||.|+++.++.++. ......+.|||...|||.+++|.+-..|++...+
T Consensus 81 ~rELF~S~~~d~~p~~~IrGKC~V~~~~d~~~l~--~~~~~~d~Ff~~~~YDP~~k~l~~~~geirvg~~ 148 (164)
T cd04709 81 HRELFLSRQVETLPATHIRGKCSVTLLNDTESAR--SYLAREDTFFYSLVYDPEQKTLLADQGEIRVGPS 148 (164)
T ss_pred cceeEEecccccccHHHeeeeEEEEEehhhhhhh--hccCCCCEEEEEEEECCCCCeecccceeEEecCc
Confidence 9999999999999999999999999999887763 3445788999999999999999999977764443
No 18
>cd04717 BAH_polybromo BAH, or Bromo Adjacent Homology domain, as present in polybromo and yeast RSC1/2. The human polybromo protein (BAF180) is a component of the SWI/SNF chromatin-remodeling complex PBAF. It is thought that polybromo participates in transcriptional regulation. Saccharomyces cerevisiae RSC1 and RSC2 are part of the 15-subunit nucleosome remodeling RSC complex. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.88 E-value=8.7e-23 Score=191.77 Aligned_cols=119 Identities=27% Similarity=0.424 Sum_probs=102.6
Q ss_pred CEEEeeCCEEEEeeCCC-CccEEEEEeEEeecCCCceEEEEEEEEeccccccccccccCCCCeEEEeCCcCCccccccce
Q 003974 113 GCLYNLGDDAYVKAEEG-AVDYIARIVELFESVDGEPYFKARWFYRAEDTVIKDLACLVDRKRVFLSDVEDDNPLNCIVS 191 (782)
Q Consensus 113 G~~y~vGD~V~v~~~~~-~~~~Ia~I~~m~e~~~g~~~v~v~WfyRp~dtv~~~~~~~~~~rELFlS~~~d~~~~~~I~g 191 (782)
|..|++||||||.+++. .++|||+|++||++.+|.++|+|+|||||+||..+. ...+.++|||+|++.+++|+++|+|
T Consensus 1 g~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~g~~~~~~~Wf~rP~et~~~~-~~~~~~~Evfls~~~d~~~~~~I~~ 79 (121)
T cd04717 1 GLQYRVGDCVYVANPEDPSKPIIFRIERLWKDEDGEKFFFGCWFYRPEETFHEP-TRKFYKNEVFKSPLYETVPVEEIVG 79 (121)
T ss_pred CCEEECCCEEEEeCCCCCCCCEEEEEeEEEECCCCCEEEEEEEEeChHHccCCC-ccccccCceEEcCccccccHHHhcC
Confidence 57899999999999864 889999999999999999999999999999996544 4567899999999999999999999
Q ss_pred eeEEEeeCCcchhhhhhcCCCCCceeeeccccCCCceeeecC
Q 003974 192 KAKIAEVATNMDLEAKQKNIPPCDLYYDMKYTLPHLTFLNIN 233 (782)
Q Consensus 192 kc~V~~~~~~~~~~~~~~~~~~~~ffy~~~Y~~~~~~F~~lp 233 (782)
||.|+..+++.+..+.. ....+.|||++.|++..+.|..+-
T Consensus 80 kc~Vl~~~~y~~~~p~~-~~~~dvy~ce~~y~~~~~~~~~~k 120 (121)
T cd04717 80 KCAVMDVKDYIKGRPTE-ISEEDVYVCESRYNESAKSFKKIK 120 (121)
T ss_pred eeEEEehHHHhcCCCCC-CCCCCEEEEeEEECcccccEeccc
Confidence 99999999887664321 112355889999999999998763
No 19
>smart00439 BAH Bromo adjacent homology domain.
Probab=99.88 E-value=1.2e-22 Score=189.89 Aligned_cols=118 Identities=31% Similarity=0.504 Sum_probs=104.2
Q ss_pred EEeeCCEEEEeeCC-CCccEEEEEeEEeecCCCc-eEEEEEEEEeccccccccccccCCCCeEEEeCCcCCcccccccee
Q 003974 115 LYNLGDDAYVKAEE-GAVDYIARIVELFESVDGE-PYFKARWFYRAEDTVIKDLACLVDRKRVFLSDVEDDNPLNCIVSK 192 (782)
Q Consensus 115 ~y~vGD~V~v~~~~-~~~~~Ia~I~~m~e~~~g~-~~v~v~WfyRp~dtv~~~~~~~~~~rELFlS~~~d~~~~~~I~gk 192 (782)
.|++||+|||.+++ .+++|||+|++||++.++. ++++|+|||||+||+.+. ...+++||||+|++++++++++|.||
T Consensus 1 ~~~vgd~V~v~~~~~~~~~~i~~I~~i~~~~~~~~~~~~v~Wf~rp~e~~~~~-~~~~~~~Elf~s~~~~~i~~~~I~~k 79 (120)
T smart00439 1 TIRVGDFVLVEPDDADEPYYIGRIEEIFETKKNSEKMVRVRWFYRPEETVLEK-AALFDKNEVFLSDEYDTVPLSDIIGK 79 (120)
T ss_pred CcccCCEEEEeCCCCCCCCEEEEEEEEEECCCCCEEEEEEEEEEChhhccccc-cccCCCcceEEEccCccCChHHeeeE
Confidence 37999999999997 6899999999999999988 899999999999997654 34568999999999999999999999
Q ss_pred eEEEeeCCcchhhhhhcCCCCCceeeeccccCCCceeeecC
Q 003974 193 AKIAEVATNMDLEAKQKNIPPCDLYYDMKYTLPHLTFLNIN 233 (782)
Q Consensus 193 c~V~~~~~~~~~~~~~~~~~~~~ffy~~~Y~~~~~~F~~lp 233 (782)
|.|++.+++............+.|||++.|++.+++|.++|
T Consensus 80 c~V~~~~~~~~~~~~~~~~~~~~f~cr~~yd~~~~~f~~~~ 120 (120)
T smart00439 80 CNVLSKSDYPGLRPEGKIGEPDVFFCESLYDPEKGAFKKLP 120 (120)
T ss_pred EEEEEcchhcccccccCCCCCCeEEEEEEEccccCcccCCC
Confidence 99999998776654443346789999999999999998875
No 20
>cd04721 BAH_plant_1 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.84 E-value=2.9e-21 Score=182.71 Aligned_cols=116 Identities=22% Similarity=0.278 Sum_probs=100.2
Q ss_pred EEECCEEEeeCCEEEEeeCCCCccEEEEEeEEeecCCCceEEEEEEEEeccccccccccccCCCCeEEEeCCcCCccccc
Q 003974 109 ASVDGCLYNLGDDAYVKAEEGAVDYIARIVELFESVDGEPYFKARWFYRAEDTVIKDLACLVDRKRVFLSDVEDDNPLNC 188 (782)
Q Consensus 109 ~~v~G~~y~vGD~V~v~~~~~~~~~Ia~I~~m~e~~~g~~~v~v~WfyRp~dtv~~~~~~~~~~rELFlS~~~d~~~~~~ 188 (782)
++.+|.+|+|||||||.+++ ..+|||+|++||++.+|.+|++|+||+||+||..+..+..+.++|||+|++.+++|++|
T Consensus 1 ~~r~~~~i~vGD~V~v~~~~-~~~~va~Ie~i~ed~~g~~~v~v~WF~~p~E~~~~~~~~~~~~~EvFlS~~~d~i~~~~ 79 (130)
T cd04721 1 FCRNGVTISVHDFVYVLSEE-EDRYVAYIEDLYEDKKGSKMVKVRWFHTTDEVGAALSPDSVNPREIFLSPNLQVISVEC 79 (130)
T ss_pred CccCCEEEECCCEEEEeCCC-CCcEEEEEEEEEEcCCCCEEEEEEEecCHHHhccccCCCCCCCCeEEEcCCccccchHH
Confidence 35689999999999999885 77799999999999999999999999999999765444448999999999999999999
Q ss_pred cceeeEEEeeCCcchhhhhhcC-CCCCceeeeccccCC
Q 003974 189 IVSKAKIAEVATNMDLEAKQKN-IPPCDLYYDMKYTLP 225 (782)
Q Consensus 189 I~gkc~V~~~~~~~~~~~~~~~-~~~~~ffy~~~Y~~~ 225 (782)
|.|||.|+..+.+.++.....+ .....|+|+..|+..
T Consensus 80 I~gk~~Vls~~~y~k~~~~~~~~~~~~~f~C~~~~d~~ 117 (130)
T cd04721 80 IDGLATVLTREHYEKFQSVPKNSSELQAYFCYRQIDNN 117 (130)
T ss_pred eeeeeEECCHHHHhhhhccccCccccccEEEEEEecCC
Confidence 9999999999988777543333 346689999999876
No 21
>cd04719 BAH_Orc1p_animal BAH, or Bromo Adjacent Homology domain, as present in animal homologs of Saccharomyces cerevisiae Orc1p. Orc1 is part of the Yeast Sir1-origin recognition complex. The Orc1p BAH doman functions in epigenetic silencing. In vertebrates, a similar ORC protein complex exists, which has been shown essential for DNA replication in Xenopus laevis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.77 E-value=8e-19 Score=164.54 Aligned_cols=117 Identities=21% Similarity=0.328 Sum_probs=95.8
Q ss_pred EEEeeCCEEEEeeCCCCccEEEEEeEEeecCCC---ceEEEEEEEEecccccccc---ccccCCCCeEEEeCCc---CCc
Q 003974 114 CLYNLGDDAYVKAEEGAVDYIARIVELFESVDG---EPYFKARWFYRAEDTVIKD---LACLVDRKRVFLSDVE---DDN 184 (782)
Q Consensus 114 ~~y~vGD~V~v~~~~~~~~~Ia~I~~m~e~~~g---~~~v~v~WfyRp~dtv~~~---~~~~~~~rELFlS~~~---d~~ 184 (782)
.+|+|||||+|.+++.+++|||+|++||++.++ ..+++||||||++|++... .++..+++|||+|++. +++
T Consensus 2 ~~i~vGd~VlI~~~d~~~~yVAkI~~i~e~~~~~~~~~~~~VqWy~R~~Ev~~~~~~~~~~~~~~~EvF~~~~~~~~~~i 81 (128)
T cd04719 2 LTIEVGDFVLIEGEDADGPDVARILHLYEDGNEDDDPKRAIVQWFSRPSEVPKNKRKLLGREPHSQEVFFYSRSSCDNDI 81 (128)
T ss_pred eEEecCCEEEEECCCCCCCcEeeehhhhccccCCcccceEEEEcccChHHccccchhhccCCCCCcEEEEecCccccCcE
Confidence 479999999999997688899999999998776 5699999999999995222 1346789999999986 599
Q ss_pred cccccceeeEEEeeCCcchhhhhhcCCCCCceeeeccccCCCceeeecC
Q 003974 185 PLNCIVSKAKIAEVATNMDLEAKQKNIPPCDLYYDMKYTLPHLTFLNIN 233 (782)
Q Consensus 185 ~~~~I~gkc~V~~~~~~~~~~~~~~~~~~~~ffy~~~Y~~~~~~F~~lp 233 (782)
++++|.|+|.|+...++.++++. .....+.||++..|+.+ .|.+++
T Consensus 82 ~~etI~gkc~V~~~~~y~~l~~~-~~~~~~~~F~r~~~~~k--~~~~~~ 127 (128)
T cd04719 82 DAETIIGKVRVEPVEPKTDLPET-KKKTGGPLFVKRYWDTK--TFRSLD 127 (128)
T ss_pred eHHHcccEEEEEEcCCccchhhh-ccccCceEEEEEEeccc--ccccCC
Confidence 99999999999999999888752 22456889998888755 555544
No 22
>cd04711 BAH_Dnmt1_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.76 E-value=2e-18 Score=160.49 Aligned_cols=105 Identities=19% Similarity=0.209 Sum_probs=88.4
Q ss_pred CCccEEEEEeEEeecCCC-------ceEEEEEEEEecccccccccc-ccCCCCeEEEeCCcCCccccccceeeEEEeeCC
Q 003974 129 GAVDYIARIVELFESVDG-------EPYFKARWFYRAEDTVIKDLA-CLVDRKRVFLSDVEDDNPLNCIVSKAKIAEVAT 200 (782)
Q Consensus 129 ~~~~~Ia~I~~m~e~~~g-------~~~v~v~WfyRp~dtv~~~~~-~~~~~rELFlS~~~d~~~~~~I~gkc~V~~~~~ 200 (782)
.+|++||||++|+..+++ ..+|+|+|||||+||..+..+ ...|-||||+|+|.+.+|+++|.|||.|++..+
T Consensus 24 ~ePy~VgrI~eI~~~k~~~~k~~~~~ikvrV~~fYRPEdi~~g~~~ayhsDirevy~Sd~~~~~~~~~I~GKC~V~~~~d 103 (137)
T cd04711 24 PEPFRIGRIKEIFCAKRSNGKPNESDIKLRINKFYRPENTHKGFKATYHADINMLYWSDEEATVDFSAVQGRCTVEYGED 103 (137)
T ss_pred CCCcEEEEEEEEecCCCCCCCCCccceEEEEEEEecccccccccccccccceeeEEeecceeecChhhccceEEEEeccc
Confidence 789999999999976544 348999999999999655433 557779999999999999999999999999987
Q ss_pred cch-hhhhhcCCCCCceeeeccccCCCceeeecCC
Q 003974 201 NMD-LEAKQKNIPPCDLYYDMKYTLPHLTFLNINN 234 (782)
Q Consensus 201 ~~~-~~~~~~~~~~~~ffy~~~Y~~~~~~F~~lp~ 234 (782)
... +. .-....++.|||++.|+..|+.|+++|+
T Consensus 104 i~~s~~-~y~~~gpd~Fyf~~~Y~a~t~~F~d~p~ 137 (137)
T cd04711 104 LPESVQ-EYSGGGPDRFYFLEAYNAKTKSFEDPPN 137 (137)
T ss_pred cchhHH-HHhcCCCcceEEhhhhccccCcccCCCC
Confidence 553 33 2344789999999999999999999983
No 23
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.72 E-value=7.2e-19 Score=166.49 Aligned_cols=98 Identities=20% Similarity=0.332 Sum_probs=87.2
Q ss_pred CCccEEEEEeEEeecCCCceEEEEEEEEeccccccccccccCCCCeEEEeCCcCCccccccceeeEEEeeCCcchhhhhh
Q 003974 129 GAVDYIARIVELFESVDGEPYFKARWFYRAEDTVIKDLACLVDRKRVFLSDVEDDNPLNCIVSKAKIAEVATNMDLEAKQ 208 (782)
Q Consensus 129 ~~~~~Ia~I~~m~e~~~g~~~v~v~WfyRp~dtv~~~~~~~~~~rELFlS~~~d~~~~~~I~gkc~V~~~~~~~~~~~~~ 208 (782)
...+|||+|+.||++. |+.+|+|+|||||+||..| +.+.+..+|||+|++.|++++++|+|||.|+....+.+++
T Consensus 50 ~~~~~vArIekiW~~~-G~~~~~grWy~rPEET~~g-r~~~~~~kEvFlS~~~d~~~~~~I~gkC~V~~~keY~k~e--- 124 (148)
T cd04718 50 SGDLWLARIEKLWEEN-GTYWYAARWYTLPEETHMG-RQPHNLRRELYLTNDFADIEMECILRHCSVKCPKEFRDAS--- 124 (148)
T ss_pred cCchHHHHHHHHHhcc-CceEEEEEEEeCchhccCc-cccccccceeeeccccccccHHHHhcccEEcCHHHccccc---
Confidence 4578999999999986 9999999999999999554 5777889999999999999999999999999999887653
Q ss_pred cCCCCCceeeeccccCCCceeeec
Q 003974 209 KNIPPCDLYYDMKYTLPHLTFLNI 232 (782)
Q Consensus 209 ~~~~~~~ffy~~~Y~~~~~~F~~l 232 (782)
....+.|||.+.|+..+++|+.+
T Consensus 125 -~~g~Dvy~Ce~~Yd~~~~~Fkr~ 147 (148)
T cd04718 125 -NDGDDVFLCEYEYDVHWQSFKRL 147 (148)
T ss_pred -CCCCceEEEEEEEhhhcCceeec
Confidence 34667899999999999999875
No 24
>cd04720 BAH_Orc1p_Yeast BAH, or Bromo Adjacent Homology domain, as present in Orc1p, which again is part of the Saccharomyces cerevisiae Sir1-origin recognition complex, and as present in Sir3p. The Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.67 E-value=1.7e-16 Score=158.39 Aligned_cols=121 Identities=17% Similarity=0.167 Sum_probs=100.0
Q ss_pred ECCEEEeeCCEEEEeeCCCCccEEEEEeEEeecCC-CceEEEEEEEEecccccccccc-c-------cCCCCeEEEeCCc
Q 003974 111 VDGCLYNLGDDAYVKAEEGAVDYIARIVELFESVD-GEPYFKARWFYRAEDTVIKDLA-C-------LVDRKRVFLSDVE 181 (782)
Q Consensus 111 v~G~~y~vGD~V~v~~~~~~~~~Ia~I~~m~e~~~-g~~~v~v~WfyRp~dtv~~~~~-~-------~~~~rELFlS~~~ 181 (782)
-+|.+|+|||+|+|++++..++|||.|.+|++... ..+.+.|+|||||.|+..+... + ...++|||+|.|.
T Consensus 48 ~d~~~~~vGD~Vlik~~~~~~~~V~iI~ei~~~~~~~~v~i~v~Wy~r~~Ei~~~~~~~~~~~~~~~~~~~nElflT~~~ 127 (179)
T cd04720 48 SDGLELSVGDTILVKDDVANSPSVYLIHEIRLNTLNNEVELWVMWFLRWFEINPARYYKQFDPEFRSESNKNELYLTAEL 127 (179)
T ss_pred cCCeEEeCCCEEEEeCCCCCCCEEEEEEEEEeCCCCCEEEEEEEEcCCHHHcccccccccccchhcccCCCceEEEeccc
Confidence 38999999999999998778899999999998765 5579999999999999543321 1 2237999999999
Q ss_pred CCccccccceeeEEEeeCCcchhhhhhcCCCCCceeeeccccCCCceeeec
Q 003974 182 DDNPLNCIVSKAKIAEVATNMDLEAKQKNIPPCDLYYDMKYTLPHLTFLNI 232 (782)
Q Consensus 182 d~~~~~~I~gkc~V~~~~~~~~~~~~~~~~~~~~ffy~~~Y~~~~~~F~~l 232 (782)
+.+++.+|++||+|+....+.++... ......+|||+..|++.++.|...
T Consensus 128 d~i~l~~Ii~k~~Vls~~ef~~~~~~-~~~~~~~F~cR~~~d~~~~~F~~~ 177 (179)
T cd04720 128 SEIKLKDIIDKANVLSESEFNDLSTD-DKNGERTFFCRYACEPDGEEFVWI 177 (179)
T ss_pred ceEEhhheeeeEEEecHHHhhhhccc-ccCCCceEEEEEEEeCCCCeEccc
Confidence 99999999999999988876655332 224568999999999999988764
No 25
>KOG1886 consensus BAH domain proteins [Transcription]
Probab=99.57 E-value=2.3e-15 Score=165.40 Aligned_cols=150 Identities=18% Similarity=0.273 Sum_probs=123.7
Q ss_pred CCCCCceEcCCCcchhhhhccCccchhchhhHHHhhcccceeeEEEECCEEEee-CCEEEEeeCC-CCccEEEEEeEEee
Q 003974 65 KPDSDLFFVSPPVSADEALKRYPDRYKALNEEEEVLQARCHYTQASVDGCLYNL-GDDAYVKAEE-GAVDYIARIVELFE 142 (782)
Q Consensus 65 ~~~~~~~w~G~p~~~~~~~~~w~~ry~~~~~~~~~~~~r~~Y~~~~v~G~~y~v-GD~V~v~~~~-~~~~~Ia~I~~m~e 142 (782)
.......|.|.+....+...+ .++||.++.+.|..|.. +|+|++.+++ +.+||||+|++||.
T Consensus 15 ~~~~~a~~~g~a~~~qGv~~~----------------k~~h~~t~~~~~g~~~~~~d~vllvped~~~pPyvaii~~i~a 78 (464)
T KOG1886|consen 15 RPRDEASSMGDANKEQGVGGV----------------KSLHFETFIYRGGRYINYGDSVLLVPEDPGKPPYVAIIEDIYA 78 (464)
T ss_pred Cccchhhhhhhhhhhcccccc----------------ccccccceeeccCcccccCcceeecCCCCCCCCeeEEEeeeec
Confidence 334466778887777663333 57799999988887777 9999999997 89999999999998
Q ss_pred cCC-CceEEEEEEEEecccccccccc--ccCCCCeEEEeCCcCCccccccceeeEEEeeCCcchhhhhhcCCCCCceeee
Q 003974 143 SVD-GEPYFKARWFYRAEDTVIKDLA--CLVDRKRVFLSDVEDDNPLNCIVSKAKIAEVATNMDLEAKQKNIPPCDLYYD 219 (782)
Q Consensus 143 ~~~-g~~~v~v~WfyRp~dtv~~~~~--~~~~~rELFlS~~~d~~~~~~I~gkc~V~~~~~~~~~~~~~~~~~~~~ffy~ 219 (782)
+.. +..+++|+|||||+|++.+... ...++||||+|.|+|++++++|.++|.|.+++.+.+++.+ ..-..|+|+
T Consensus 79 ~~~g~~~k~ev~W~YrPee~~~~~~~~~~a~~~relF~SfH~De~~A~ti~~rC~V~fvp~~kqlp~~---~~~~~f~~r 155 (464)
T KOG1886|consen 79 QERGGNVKVEVQWFYRPEESEGGGSGKWGAKQPRELFLSFHEDEAFAETILHRCKVHFVPAYKQLPNR---VGHESFICR 155 (464)
T ss_pred cccCCCcceecccccCCCccCCCCCCCcccCCCccccccccccchhhhhhcccceeeecccccccccc---CCCCCcccc
Confidence 866 5899999999999999765543 4567899999999999999999999999999988766432 345689999
Q ss_pred ccccCCCceeeecC
Q 003974 220 MKYTLPHLTFLNIN 233 (782)
Q Consensus 220 ~~Y~~~~~~F~~lp 233 (782)
..|+.-++.|..+.
T Consensus 156 ~vYd~~~~~~~~~~ 169 (464)
T KOG1886|consen 156 RVYDAVTSKLRKLR 169 (464)
T ss_pred cccccccccccCcc
Confidence 99998888887776
No 26
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.14 E-value=3.2e-11 Score=137.82 Aligned_cols=129 Identities=20% Similarity=0.320 Sum_probs=110.9
Q ss_pred cceeeE-EEECCEEEeeCCEEEEeeCC-CCccEEEEEeEEeecCCCceEEEEEEEEeccccccccccccCCCCeEEEeCC
Q 003974 103 RCHYTQ-ASVDGCLYNLGDDAYVKAEE-GAVDYIARIVELFESVDGEPYFKARWFYRAEDTVIKDLACLVDRKRVFLSDV 180 (782)
Q Consensus 103 r~~Y~~-~~v~G~~y~vGD~V~v~~~~-~~~~~Ia~I~~m~e~~~g~~~v~v~WfyRp~dtv~~~~~~~~~~rELFlS~~ 180 (782)
..++.. +.++|..|.+||.|||...+ ...+.|++|..+|++.+|.++..++|||||++|+ ....+.+-.+|||.|..
T Consensus 177 ~~~~~~~~~i~~~~~~~gd~vlv~~~~d~~~p~v~~Ier~w~~~dg~k~~~~~w~~rP~~T~-H~a~r~F~k~Evfkt~~ 255 (629)
T KOG1827|consen 177 HYHELGPVEIDGTKYIVGDYVLVQNPADNLKPIVAQIERLWKLPDGEKWPQGCWIYRPEETV-HRADRKFYKQEVFKTSL 255 (629)
T ss_pred CcccCCCccccCcccccCceeeecCcccccCCceeeecccccCcccccccceeEeeCCccCc-cccccchhcccceeccc
Confidence 335555 89999999999999999986 4899999999999999999999999999999995 44466788999999999
Q ss_pred cCCccccccceeeEEEeeCCcchhhhhhcCCCCCceeeeccccCCCceeeecC
Q 003974 181 EDDNPLNCIVSKAKIAEVATNMDLEAKQKNIPPCDLYYDMKYTLPHLTFLNIN 233 (782)
Q Consensus 181 ~d~~~~~~I~gkc~V~~~~~~~~~~~~~~~~~~~~ffy~~~Y~~~~~~F~~lp 233 (782)
..+.+++.|+|+|.|++...+....+. .......|.|.++|+...+.|..+-
T Consensus 256 ~~~~~~q~l~g~c~v~~~~~yi~~~p~-~ls~~dv~lcesRyn~~~K~f~kir 307 (629)
T KOG1827|consen 256 YRDDLVQRLLGKCYVMKPTEYISGDPE-NLSEEDVFLCESRYNEQLKKFNKIR 307 (629)
T ss_pred ccccHHHHhhcceEEeehhHhhhcCcc-cccccceeeEEeeeccchhhhcccc
Confidence 999999999999999999977655322 2234567999999999999988766
No 27
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=98.47 E-value=2e-08 Score=108.89 Aligned_cols=122 Identities=20% Similarity=0.277 Sum_probs=95.9
Q ss_pred EEEeeCCEEEEeeCCCCccEEEEEeEEeecCCCceEEEEEEEEecccccccc----------------------------
Q 003974 114 CLYNLGDDAYVKAEEGAVDYIARIVELFESVDGEPYFKARWFYRAEDTVIKD---------------------------- 165 (782)
Q Consensus 114 ~~y~vGD~V~v~~~~~~~~~Ia~I~~m~e~~~g~~~v~v~WfyRp~dtv~~~---------------------------- 165 (782)
..|+|||+||++.....|+.|-+|+++-.+.+|..-.+|--|||-.|+....
T Consensus 4 n~y~vgd~vYf~~sss~PYliRrIEELnKTa~GnVeAkvVc~~RRRDIs~~L~~lAD~~ar~~~~y~a~~~a~~~~e~e~ 83 (693)
T KOG3554|consen 4 NMYRVGDYVYFENSSSNPYLIRRIEELNKTANGNVEAKVVCYLRRRDISSHLLKLADKHARRFDNYAAPEAAPEATEAEI 83 (693)
T ss_pred ccceecceEEEecCCCChHHHHHHHHHhccccCCcceEEEEEEEccchHHHHHHHHHHHhhhcccccCcccCcccchhhh
Confidence 3799999999999987799999999999999999999999999977763111
Q ss_pred ---------------ccccCCCCeEEEeCCcCCccccccceeeEEEeeCCcchhhhhhcCCCCCceeeeccccCCCceee
Q 003974 166 ---------------LACLVDRKRVFLSDVEDDNPLNCIVSKAKIAEVATNMDLEAKQKNIPPCDLYYDMKYTLPHLTFL 230 (782)
Q Consensus 166 ---------------~~~~~~~rELFlS~~~d~~~~~~I~gkc~V~~~~~~~~~~~~~~~~~~~~ffy~~~Y~~~~~~F~ 230 (782)
+....-.+|||+|......|+..|+|||.|..+.+...+. ......+.|||.+.|||..+++.
T Consensus 84 EEe~e~p~~vdlt~~qrhqLrhrElFlsRQ~EsLPAthIRGKCsV~LLnete~~~--~YL~~eDtFfySLVyDP~~kTLL 161 (693)
T KOG3554|consen 84 EEESECPAPVDLTEKQRHQLRHRELFLSRQSESLPATHIRGKCSVTLLNETESLQ--SYLEKEDTFFYSLVYDPNQKTLL 161 (693)
T ss_pred hhhccCCCcCCCCHHHHHHHHHHHHHHhhhhccCchhhhccceeEEEecChHHHH--hhccccceeEEEeeeccchhhhh
Confidence 0111235899999999999999999999999998755443 23345678999999999976655
Q ss_pred ecCCcCC
Q 003974 231 NINNESN 237 (782)
Q Consensus 231 ~lp~e~~ 237 (782)
.=..++.
T Consensus 162 ADkGeIR 168 (693)
T KOG3554|consen 162 ADKGEIR 168 (693)
T ss_pred ccCccee
Confidence 4444443
No 28
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.14 E-value=0.0016 Score=73.16 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=33.6
Q ss_pred cceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
-++||||||+|.+++.+ ...|..+ .|||+++.|++..+.|.
T Consensus 235 ~~vLDL~cG~G~~~l~l----a~~~~~v---~~vE~~~~av~~a~~N~ 275 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHC----AGPDTQL---TGIEIESEAIACAQQSA 275 (374)
T ss_pred CEEEEccCCccHHHHHH----hhcCCeE---EEEECCHHHHHHHHHHH
Confidence 37999999999998877 3445443 59999999999999885
No 29
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.87 E-value=0.0017 Score=64.98 Aligned_cols=43 Identities=35% Similarity=0.533 Sum_probs=37.8
Q ss_pred ceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCC
Q 003974 263 SLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPE 311 (782)
Q Consensus 263 ~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~ 311 (782)
+++||-||+|-++.|. ...|-.- +.|||+|+.|.++.+.|..+
T Consensus 48 ~V~DlG~GTG~La~ga----~~lGa~~--V~~vdiD~~a~ei~r~N~~~ 90 (198)
T COG2263 48 TVLDLGAGTGILAIGA----ALLGASR--VLAVDIDPEALEIARANAEE 90 (198)
T ss_pred EEEEcCCCcCHHHHHH----HhcCCcE--EEEEecCHHHHHHHHHHHHh
Confidence 6999999999999887 6888763 47999999999999999874
No 30
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=96.87 E-value=0.002 Score=59.22 Aligned_cols=44 Identities=25% Similarity=0.339 Sum_probs=36.1
Q ss_pred cceeccccccchhHHHHHHhhhhcC-CceeeEEEEecCHHHHHHHHHhCCCC
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSG-VKLVTRWAIDINPHACKSLKFNHPET 312 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG-~~~~~~~ave~~~~a~~t~~~N~p~~ 312 (782)
.++||+|||.|.+...+ ...| .. ..++|+|+.|++..+.|.+..
T Consensus 2 ~~vlD~~~G~G~~~~~~----~~~~~~~---~~gvdi~~~~~~~a~~~~~~~ 46 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAA----LRRGAAR---VTGVDIDPEAVELARRNLPRN 46 (117)
T ss_dssp EEEEEETSTTCHHHHHH----HHHCTCE---EEEEESSHHHHHHHHHHCHHC
T ss_pred CEEEEcCcchHHHHHHH----HHHCCCe---EEEEEECHHHHHHHHHHHHHc
Confidence 47999999999988877 4556 44 369999999999999998653
No 31
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=96.79 E-value=0.011 Score=67.68 Aligned_cols=41 Identities=20% Similarity=0.366 Sum_probs=33.3
Q ss_pred cceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
-++||||||.|.++.-|. ..+.++ .|||+++.|++..+.|.
T Consensus 294 ~~vLDl~cG~G~~sl~la----~~~~~V---~~vE~~~~av~~a~~n~ 334 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLA----KQAKSV---VGIEVVPESVEKAQQNA 334 (431)
T ss_pred CEEEEcCCCcCHHHHHHH----HhCCEE---EEEEcCHHHHHHHHHHH
Confidence 489999999999998873 333343 59999999999998874
No 32
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=96.78 E-value=0.005 Score=65.35 Aligned_cols=44 Identities=34% Similarity=0.610 Sum_probs=34.9
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
..++||||||+|.++..+.. ...|.++ +|+|+++.|++..+.|.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~--~~~~~~v---~~vDis~~al~~A~~N~ 130 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAA--ALDGIEL---HAADIDPAAVRCARRNL 130 (251)
T ss_pred CCEEEEecCchHHHHHHHHH--hCCCCEE---EEEECCHHHHHHHHHHH
Confidence 35899999999999988732 2335554 59999999999999885
No 33
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.76 E-value=0.011 Score=71.97 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=35.5
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
.-+|||||||.|++++-+ ...|..-+ .+||+++.|++..+.|.
T Consensus 539 g~rVLDlf~gtG~~sl~a----a~~Ga~~V--~~vD~s~~al~~a~~N~ 581 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHA----ALGGAKST--TTVDMSNTYLEWAERNF 581 (702)
T ss_pred CCeEEEcCCCCCHHHHHH----HHCCCCEE--EEEeCCHHHHHHHHHHH
Confidence 358999999999998876 45676533 49999999999999986
No 34
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=96.71 E-value=0.0057 Score=60.47 Aligned_cols=40 Identities=28% Similarity=0.449 Sum_probs=31.2
Q ss_pred ceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 263 SLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 263 ~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
+++|+|||+||-+..| ++.+-.| .|||+|+.-++..++|.
T Consensus 2 ~vlD~fcG~GGNtIqF----A~~~~~V---iaidid~~~~~~a~hNa 41 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQF----ARTFDRV---IAIDIDPERLECAKHNA 41 (163)
T ss_dssp EEEETT-TTSHHHHHH----HHTT-EE---EEEES-HHHHHHHHHHH
T ss_pred EEEEeccCcCHHHHHH----HHhCCeE---EEEECCHHHHHHHHHHH
Confidence 5899999999999999 4454443 59999999999999983
No 35
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.60 E-value=0.0056 Score=61.91 Aligned_cols=45 Identities=33% Similarity=0.382 Sum_probs=31.8
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP 310 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p 310 (782)
...++||||||.|+|++ + |-.-|.+-+ ..||.++.|++.++.|.-
T Consensus 42 ~g~~vLDLFaGSGalGl--E--ALSRGA~~v--~fVE~~~~a~~~i~~N~~ 86 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGL--E--ALSRGAKSV--VFVEKNRKAIKIIKKNLE 86 (183)
T ss_dssp TT-EEEETT-TTSHHHH--H--HHHTT-SEE--EEEES-HHHHHHHHHHHH
T ss_pred CCCeEEEcCCccCccHH--H--HHhcCCCeE--EEEECCHHHHHHHHHHHH
Confidence 45799999999998654 2 234566544 599999999999999953
No 36
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=96.50 E-value=0.0088 Score=65.64 Aligned_cols=41 Identities=27% Similarity=0.422 Sum_probs=33.9
Q ss_pred cceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
-++||||||.|.++.-| ...|.++ .|+|+++.|++..+.|.
T Consensus 175 ~~VLDl~cG~G~~sl~l----a~~~~~V---~gvD~s~~av~~A~~n~ 215 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHC----ATPGMQL---TGIEISAEAIACAKQSA 215 (315)
T ss_pred CEEEEccCCCCHHHHHH----HhcCCEE---EEEeCCHHHHHHHHHHH
Confidence 58999999999998877 3456544 59999999999988875
No 37
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=96.22 E-value=0.0015 Score=52.02 Aligned_cols=36 Identities=50% Similarity=0.947 Sum_probs=32.5
Q ss_pred CcceeEEeeccCCCCCCCcccccccchhhhhhHHhH
Q 003974 396 PGVYFKVRWKGYGPSEDTWEPIKGLSKCKEKLKEFV 431 (782)
Q Consensus 396 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (782)
..+.+.|.|+|+..+++||++.+.|..+...|++|.
T Consensus 18 ~~~~y~VkW~g~~~~~~tWe~~~~l~~~~~~i~~~~ 53 (55)
T cd00024 18 GEYEYLVKWKGYSYSEDTWEPEENLEDCKELIDEFK 53 (55)
T ss_pred CcEEEEEEECCCCCccCccccHHHhCchHHHHHHHH
Confidence 678999999999999999999999998877788774
No 38
>PHA03411 putative methyltransferase; Provisional
Probab=96.21 E-value=0.012 Score=62.91 Aligned_cols=53 Identities=23% Similarity=0.257 Sum_probs=40.6
Q ss_pred cceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccch
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAA 319 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~ 319 (782)
-++|||+||+|.++..+.. +..+.++ .+||+++.+++..+.|.++..+++.|+
T Consensus 66 grVLDLGcGsGilsl~la~--r~~~~~V---~gVDisp~al~~Ar~n~~~v~~v~~D~ 118 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLH--RCKPEKI---VCVELNPEFARIGKRLLPEAEWITSDV 118 (279)
T ss_pred CeEEEcCCCCCHHHHHHHH--hCCCCEE---EEEECCHHHHHHHHHhCcCCEEEECch
Confidence 3799999999998876621 1224554 599999999999999988777666554
No 39
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=96.17 E-value=0.0064 Score=61.76 Aligned_cols=57 Identities=25% Similarity=0.330 Sum_probs=42.4
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC------CCcccccchHHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP------ETKVRNEAADDFL 323 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p------~~~~~~~d~~~~~ 323 (782)
.-++||||||.|+++.-+ ...|...+ .+||.++.|++..+.|.- ...+++.|+..++
T Consensus 50 g~~vLDLfaGsG~lglea----~srga~~v--~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l 112 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEA----LSRGAKVA--FLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRAL 112 (189)
T ss_pred CCEEEEecCCCcHHHHHH----HhCCCCEE--EEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHH
Confidence 357999999999877655 45566433 599999999999988842 3467777876653
No 40
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=96.13 E-value=0.04 Score=63.42 Aligned_cols=42 Identities=17% Similarity=0.240 Sum_probs=33.6
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
..++||||||.|.++.-|. ..+..+ .|+|+++.|++..+.|.
T Consensus 298 ~~~VLDlgcGtG~~sl~la----~~~~~V---~gvD~s~~al~~A~~n~ 339 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLA----RQAAEV---VGVEGVEAMVERARENA 339 (443)
T ss_pred CCEEEEEeccCCHHHHHHH----HhCCEE---EEEeCCHHHHHHHHHHH
Confidence 3589999999999988773 334443 59999999999988875
No 41
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.13 E-value=0.015 Score=58.67 Aligned_cols=45 Identities=36% Similarity=0.430 Sum_probs=35.0
Q ss_pred CCCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 259 QPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 259 ~~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
....++||||||.|+| ||+ |-.-|...+ ..||.|..|+.+++.|.
T Consensus 42 i~g~~~LDlFAGSGaL--GlE--AlSRGA~~~--~~vE~~~~a~~~l~~N~ 86 (187)
T COG0742 42 IEGARVLDLFAGSGAL--GLE--ALSRGAARV--VFVEKDRKAVKILKENL 86 (187)
T ss_pred cCCCEEEEecCCccHh--HHH--HHhCCCceE--EEEecCHHHHHHHHHHH
Confidence 4567999999999975 453 244566555 48999999999999994
No 42
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=96.10 E-value=0.01 Score=60.76 Aligned_cols=43 Identities=19% Similarity=0.243 Sum_probs=31.7
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
.-++||||||+|.+++.+ +.....++ .+||+++.|++..+.|.
T Consensus 54 ~~~vLDl~~GsG~l~l~~---lsr~a~~V---~~vE~~~~a~~~a~~Nl 96 (199)
T PRK10909 54 DARCLDCFAGSGALGLEA---LSRYAAGA---TLLEMDRAVAQQLIKNL 96 (199)
T ss_pred CCEEEEcCCCccHHHHHH---HHcCCCEE---EEEECCHHHHHHHHHHH
Confidence 348999999999888643 12222233 49999999999988874
No 43
>PHA03412 putative methyltransferase; Provisional
Probab=96.00 E-value=0.01 Score=62.00 Aligned_cols=55 Identities=22% Similarity=0.155 Sum_probs=40.5
Q ss_pred CcceeccccccchhHHHHHHhhh-hcCCceeeEEEEecCHHHHHHHHHhCCCCcccccc
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGAS-LSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEA 318 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~-~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d 318 (782)
..++||+.||.|.++..+..-+. ....+ +.|||+|+.|++..+.|.+...+++.|
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~---V~aVEID~~Al~~Ar~n~~~~~~~~~D 105 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPRE---IVCVELNHTYYKLGKRIVPEATWINAD 105 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcE---EEEEECCHHHHHHHHhhccCCEEEEcc
Confidence 46999999999999887632110 01233 369999999999999998876666644
No 44
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.97 E-value=0.05 Score=62.19 Aligned_cols=43 Identities=28% Similarity=0.435 Sum_probs=34.9
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
..-+++|||||.|.+++.| .....+| .|||+++.|++..+.|-
T Consensus 293 ~~~~vlDlYCGvG~f~l~l----A~~~~~V---~gvEi~~~aV~~A~~NA 335 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPL----AKRVKKV---HGVEISPEAVEAAQENA 335 (432)
T ss_pred CCCEEEEeccCCChhhhhh----cccCCEE---EEEecCHHHHHHHHHHH
Confidence 4458999999999999888 3344444 59999999999999884
No 45
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=95.79 E-value=0.035 Score=59.40 Aligned_cols=47 Identities=21% Similarity=0.169 Sum_probs=35.1
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP 310 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p 310 (782)
+..++||+|||.||.++-+..-+...| . ++|+|+++..++..+.|..
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g-~---v~a~D~~~~~l~~~~~n~~ 117 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEG-A---IVANEFSKSRTKVLIANIN 117 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCC-E---EEEEcCCHHHHHHHHHHHH
Confidence 446899999999999987742222234 2 3699999999999988753
No 46
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.71 E-value=0.0078 Score=57.60 Aligned_cols=50 Identities=30% Similarity=0.399 Sum_probs=40.8
Q ss_pred CCCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcc
Q 003974 259 QPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKV 314 (782)
Q Consensus 259 ~~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~ 314 (782)
-+..+++||.||||.+|.|+ ..-+.+. +.++|+|+.|.+++..|--+.+|
T Consensus 47 iEgkkl~DLgcgcGmLs~a~----sm~~~e~--vlGfDIdpeALEIf~rNaeEfEv 96 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAF----SMPKNES--VLGFDIDPEALEIFTRNAEEFEV 96 (185)
T ss_pred ccCcchhhhcCchhhhHHHh----hcCCCce--EEeeecCHHHHHHHhhchHHhhh
Confidence 35578999999999999988 4566664 47999999999999998765443
No 47
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=95.61 E-value=0.032 Score=63.20 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=32.9
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
.-++||||||+|++++.. ...|..-+ .+||+++.|++..+.|.
T Consensus 221 g~rVLDlfsgtG~~~l~a----a~~ga~~V--~~VD~s~~al~~a~~N~ 263 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSA----LMGGCSQV--VSVDTSQEALDIARQNV 263 (396)
T ss_pred CCeEEEeccCCCHHHHHH----HhCCCCEE--EEEECCHHHHHHHHHHH
Confidence 358999999999987643 34554322 59999999999888875
No 48
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=95.61 E-value=0.08 Score=52.94 Aligned_cols=41 Identities=32% Similarity=0.441 Sum_probs=33.6
Q ss_pred cceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
-++|||.||.|.++..+ ...|.++ .++|+++.+++..+.|.
T Consensus 21 ~~vLdlG~G~G~~~~~l----~~~~~~v---~~vD~s~~~~~~a~~~~ 61 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRL----KGKGKCI---LTTDINPFAVKELRENA 61 (179)
T ss_pred CeEEEeCCChhHHHHHH----HhcCCEE---EEEECCHHHHHHHHHHH
Confidence 47999999999998877 3455543 59999999999988875
No 49
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=95.35 E-value=0.019 Score=58.78 Aligned_cols=43 Identities=33% Similarity=0.506 Sum_probs=30.9
Q ss_pred cceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
-+++|+|||+|.+++-+. +.+..+. ++|+|+||.|++.++.|-
T Consensus 103 e~VlD~faGIG~f~l~~a---k~~~~~~--V~A~d~Np~a~~~L~~Ni 145 (200)
T PF02475_consen 103 EVVLDMFAGIGPFSLPIA---KHGKAKR--VYAVDLNPDAVEYLKENI 145 (200)
T ss_dssp -EEEETT-TTTTTHHHHH---HHT-SSE--EEEEES-HHHHHHHHHHH
T ss_pred eEEEEccCCccHHHHHHh---hhcCccE--EEEecCCHHHHHHHHHHH
Confidence 489999999999998762 3234442 379999999999998873
No 50
>PRK14967 putative methyltransferase; Provisional
Probab=95.08 E-value=0.26 Score=51.23 Aligned_cols=43 Identities=30% Similarity=0.489 Sum_probs=32.7
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
.-++||++||.|.++.-+ ...|.. .+.++|+++.+++..+.|.
T Consensus 37 ~~~vLDlGcG~G~~~~~l----a~~~~~--~v~~vD~s~~~l~~a~~n~ 79 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAA----AAAGAG--SVTAVDISRRAVRSARLNA 79 (223)
T ss_pred CCeEEEecCCHHHHHHHH----HHcCCC--eEEEEECCHHHHHHHHHHH
Confidence 358999999999988766 344652 2259999999998877765
No 51
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=94.90 E-value=0.033 Score=62.55 Aligned_cols=58 Identities=36% Similarity=0.452 Sum_probs=44.9
Q ss_pred CcceeccccccchhHHHHHHhhhh-cCCceeeEEEEecCHHHHHHHHHhC-----CCCcccccchHHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASL-SGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADDFL 323 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~-aG~~~~~~~ave~~~~a~~t~~~N~-----p~~~~~~~d~~~~~ 323 (782)
.+++||+|||+|.+++=+ +.. .|++.+ +++|+|+.|++..+.|. .+..+++.|+..++
T Consensus 45 ~~~vLD~faGsG~rgir~---a~e~~ga~~V--v~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l 108 (374)
T TIGR00308 45 YINIADALSASGIRAIRY---AHEIEGVREV--FANDINPKAVESIKNNVEYNSVENIEVPNEDAANVL 108 (374)
T ss_pred CCEEEECCCchhHHHHHH---HhhCCCCCEE--EEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHH
Confidence 489999999999876544 233 377654 79999999999998885 23568888888875
No 52
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=94.89 E-value=0.045 Score=63.07 Aligned_cols=46 Identities=22% Similarity=0.218 Sum_probs=34.4
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP 310 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p 310 (782)
..++||+|||.||.+.-+...+...| . ++|+|+++..++..+.|..
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~~-~---V~avD~s~~~l~~~~~~~~ 296 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNRG-Q---ITAVDRYPQKLEKIRSHAS 296 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCCc-E---EEEEECCHHHHHHHHHHHH
Confidence 35899999999999877643222222 3 3699999999999888764
No 53
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=94.81 E-value=0.014 Score=46.73 Aligned_cols=34 Identities=47% Similarity=0.952 Sum_probs=31.1
Q ss_pred ceeEEeeccCCCCCCCcccccccchh-hhhhHHhH
Q 003974 398 VYFKVRWKGYGPSEDTWEPIKGLSKC-KEKLKEFV 431 (782)
Q Consensus 398 ~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 431 (782)
+.|.|.|+|+..+++||++.+.|.++ +++|++|-
T Consensus 19 ~~ylVkW~g~~~~~~tWe~~~~l~~~~~~li~~f~ 53 (55)
T PF00385_consen 19 YEYLVKWKGYPYSENTWEPEENLKNCFPELIEEFE 53 (55)
T ss_dssp EEEEEEETTSSGGGEEEEEGGGCSSHCHHHHHHHH
T ss_pred EEEEEEECCCCCCCCeEeeHHHHhHhhHHHHHHHh
Confidence 58999999999999999999999988 77888884
No 54
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=94.64 E-value=0.016 Score=45.93 Aligned_cols=39 Identities=46% Similarity=0.907 Sum_probs=33.6
Q ss_pred CCCcceeEEeeccCCCCCCCcccccccchhhhhhHHhHh
Q 003974 394 KKPGVYFKVRWKGYGPSEDTWEPIKGLSKCKEKLKEFVT 432 (782)
Q Consensus 394 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (782)
.+..+.|.|.|+|+..+++||++.+.|..+.+.|.+|..
T Consensus 14 ~~~~~~ylVkW~g~~~~~~tW~~~~~l~~~~~~v~~~~~ 52 (55)
T smart00298 14 KKGELEYLVKWKGYSYSEDTWEPEENLLNCSKKLDNYKK 52 (55)
T ss_pred CCCcEEEEEEECCCCCccCceeeHHHHHHHHHHHHHHHH
Confidence 345678999999999999999999999888888888753
No 55
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=94.41 E-value=0.054 Score=60.67 Aligned_cols=54 Identities=24% Similarity=0.458 Sum_probs=41.8
Q ss_pred ceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC-----CCCcccccchHHHH
Q 003974 263 SLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADDFL 323 (782)
Q Consensus 263 ~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~-----p~~~~~~~d~~~~~ 323 (782)
++||||||.|+++..|.. ++.-+ .|||+++.|++..+.|. .+..++..|+.+++
T Consensus 209 ~vLDl~~G~G~~sl~la~-----~~~~v--~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l 267 (362)
T PRK05031 209 DLLELYCGNGNFTLALAR-----NFRRV--LATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFT 267 (362)
T ss_pred eEEEEeccccHHHHHHHh-----hCCEE--EEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHH
Confidence 599999999999997732 22322 59999999999998873 24567888888774
No 56
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=94.34 E-value=0.072 Score=60.07 Aligned_cols=57 Identities=33% Similarity=0.336 Sum_probs=43.7
Q ss_pred cceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC-----CCCcccccchHHHH
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADDFL 323 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~-----p~~~~~~~d~~~~~ 323 (782)
.++||+|||+|.++.-+. ..+|..- ++|+|+|+.|++..+.|. .+..+++.|+..++
T Consensus 59 ~~vLDl~aGsG~~~l~~a---~~~~~~~--V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l 120 (382)
T PRK04338 59 ESVLDALSASGIRGIRYA---LETGVEK--VTLNDINPDAVELIKKNLELNGLENEKVFNKDANALL 120 (382)
T ss_pred CEEEECCCcccHHHHHHH---HHCCCCE--EEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHH
Confidence 589999999999887663 3456432 379999999999998874 33457888887764
No 57
>KOG1911 consensus Heterochromatin-associated protein HP1 and related CHROMO domain proteins [Chromatin structure and dynamics]
Probab=94.08 E-value=0.046 Score=58.71 Aligned_cols=55 Identities=33% Similarity=0.710 Sum_probs=45.2
Q ss_pred CchhHHHHHHHHHhcCCCCCCCCCcceeEEeeccCCCCCCCcccccccchhhhhhHHhHhc
Q 003974 373 PNEEFEVERLIAVCYGDPNKTKKPGVYFKVRWKGYGPSEDTWEPIKGLSKCKEKLKEFVTK 433 (782)
Q Consensus 373 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (782)
..++|.|+++++. +..+..+.+.|.|+||..+.+||+|-..+.+|+++|.+|...
T Consensus 45 ~~~~~vvEki~~~------r~~~g~~eYlvkW~Gy~~~~ntWEPee~~~~C~~li~~~~~~ 99 (270)
T KOG1911|consen 45 EEEEYVVEKILKR------RKKNGKIEYLVKWKGYPDPDNTWEPEEHNLDCPELIDEFEKS 99 (270)
T ss_pred ccchhhhhhhhhc------cccCCCceeeeecCCCCCccccCCchhhccccHHHHHHHHHH
Confidence 4556777777665 344445789999999999999999999999999999999876
No 58
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=93.89 E-value=0.092 Score=60.46 Aligned_cols=43 Identities=28% Similarity=0.279 Sum_probs=33.5
Q ss_pred CcceeccccccchhHHHHHHhhhhc--CCceeeEEEEecCHHHHHHHHHhC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLS--GVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~a--G~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
.-++||++||.|+.++-+. +.. +.. +.|+|+++.+.+..+.|.
T Consensus 251 g~~VLDlgaG~G~~t~~la---~~~~~~~~---v~avDi~~~~l~~~~~n~ 295 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIA---ELLKNTGK---VVALDIHEHKLKLIEENA 295 (444)
T ss_pred CCEEEEeCCCCCHHHHHHH---HHhCCCCE---EEEEeCCHHHHHHHHHHH
Confidence 3589999999999998774 222 223 359999999999988875
No 59
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=93.87 E-value=0.1 Score=59.95 Aligned_cols=47 Identities=26% Similarity=0.331 Sum_probs=34.7
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP 310 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p 310 (782)
+..++||+|||.||.++-+..-+...| . +.|+|+++..++..+.|..
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g-~---v~a~D~~~~rl~~~~~n~~ 298 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQG-E---IWAVDRSASRLKKLQENAQ 298 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCc-e---EEEEcCCHHHHHHHHHHHH
Confidence 345899999999999988742111122 3 3599999999999888753
No 60
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=93.83 E-value=0.08 Score=60.66 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=35.2
Q ss_pred CCcceeccccccchhHHHHHHhhhhc-CCceeeEEEEecCHHHHHHHHHhCCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLS-GVKLVTRWAIDINPHACKSLKFNHPE 311 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~a-G~~~~~~~ave~~~~a~~t~~~N~p~ 311 (782)
+..++||++||.|+.++-+. +.. +.. +.|+|+++.+++..+.|...
T Consensus 244 ~g~~VLDlgaG~G~~t~~la---~~~~~~~---v~a~D~s~~~l~~~~~n~~~ 290 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHIL---ELAPQAQ---VVALDIDAQRLERVRENLQR 290 (427)
T ss_pred CCCEEEEeCCCCChHHHHHH---HHcCCCE---EEEEeCCHHHHHHHHHHHHH
Confidence 34589999999999998773 222 233 36999999999999988643
No 61
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=93.75 E-value=0.063 Score=59.22 Aligned_cols=44 Identities=36% Similarity=0.564 Sum_probs=35.9
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
.--+|+|+|||.|-+|.-+ ...|-. .+.|+|+||.|++-++.|-
T Consensus 188 ~GE~V~DmFAGVGpfsi~~----Ak~g~~--~V~A~diNP~A~~~L~eNi 231 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPI----AKKGRP--KVYAIDINPDAVEYLKENI 231 (341)
T ss_pred CCCEEEEccCCcccchhhh----hhcCCc--eEEEEecCHHHHHHHHHHH
Confidence 3568999999999999876 456654 2479999999999999984
No 62
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=93.52 E-value=0.71 Score=52.13 Aligned_cols=41 Identities=24% Similarity=0.397 Sum_probs=34.9
Q ss_pred cceeccccccchhHHHHHHhhhhcCC-ceeeEEEEecCHHHHHHHHHhC
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSGV-KLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG~-~~~~~~ave~~~~a~~t~~~N~ 309 (782)
-+||+|||=.||+|.-. ..+|. +++ +||++..|.+.-+.|+
T Consensus 219 krvLNlFsYTGgfSv~A----a~gGA~~vt---~VD~S~~al~~a~~N~ 260 (393)
T COG1092 219 KRVLNLFSYTGGFSVHA----ALGGASEVT---SVDLSKRALEWARENA 260 (393)
T ss_pred CeEEEecccCcHHHHHH----HhcCCCceE---EEeccHHHHHHHHHHH
Confidence 36999999999888654 78898 543 8999999999999986
No 63
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=93.45 E-value=0.57 Score=47.98 Aligned_cols=45 Identities=9% Similarity=0.079 Sum_probs=34.1
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
...++|||.||.|.++..|.. ...+.++ +|||+++.+++..+.|.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~--~~p~~~v---~gVD~s~~~i~~a~~~~ 84 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAK--ANPDINF---IGIEVHEPGVGKALKKI 84 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHH--HCCCccE---EEEEechHHHHHHHHHH
Confidence 456899999999999988731 2233443 59999999998888764
No 64
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=93.21 E-value=0.11 Score=58.12 Aligned_cols=54 Identities=24% Similarity=0.425 Sum_probs=41.3
Q ss_pred ceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC-----CCCcccccchHHHH
Q 003974 263 SLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADDFL 323 (782)
Q Consensus 263 ~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~-----p~~~~~~~d~~~~~ 323 (782)
++||||||.|.++..|.. .++ ++ .|||+++.|++..+.|. .+..++.+|+.+++
T Consensus 200 ~vlDl~~G~G~~sl~la~---~~~-~v---~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~ 258 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQ---NFR-RV---LATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFT 258 (353)
T ss_pred cEEEEeccccHHHHHHHH---hCC-EE---EEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHH
Confidence 599999999999997742 222 33 59999999999999884 24557788887764
No 65
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=92.73 E-value=0.1 Score=58.31 Aligned_cols=40 Identities=30% Similarity=0.463 Sum_probs=29.6
Q ss_pred ceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 263 SLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 263 ~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
.+||||||+|.+|+-| ...+-+| .|||+++.|++.-+.|.
T Consensus 199 ~vlDlycG~G~fsl~l----a~~~~~V---~gvE~~~~av~~A~~Na 238 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPL----AKKAKKV---IGVEIVEEAVEDARENA 238 (352)
T ss_dssp EEEEES-TTTCCHHHH----HCCSSEE---EEEES-HHHHHHHHHHH
T ss_pred cEEEEeecCCHHHHHH----HhhCCeE---EEeeCCHHHHHHHHHHH
Confidence 6999999999999887 3333333 59999999988877763
No 66
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=92.72 E-value=0.18 Score=53.30 Aligned_cols=43 Identities=26% Similarity=0.304 Sum_probs=33.0
Q ss_pred CcceeccccccchhHHHHHHhhhh-cCCceeeEEEEecCHHHHHHHHHhC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASL-SGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~-aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
.-++|||.||+|.+++-+. .+ .-.++ .+||+++.+++--..|.
T Consensus 45 ~~~IlDlGaG~G~l~L~la---~r~~~a~I---~~VEiq~~~a~~A~~nv 88 (248)
T COG4123 45 KGRILDLGAGNGALGLLLA---QRTEKAKI---VGVEIQEEAAEMAQRNV 88 (248)
T ss_pred CCeEEEecCCcCHHHHHHh---ccCCCCcE---EEEEeCHHHHHHHHHHH
Confidence 5699999999999887663 34 22554 49999999988777764
No 67
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=92.59 E-value=0.14 Score=50.77 Aligned_cols=54 Identities=24% Similarity=0.347 Sum_probs=42.1
Q ss_pred cceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC---CCcccccchHHH
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP---ETKVRNEAADDF 322 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p---~~~~~~~d~~~~ 322 (782)
-++||++||.|.++.-+. ..+.++ .|+|+|+.+++..+.|.. +..++++|+.++
T Consensus 15 ~~vLEiG~G~G~lt~~l~----~~~~~v---~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~ 71 (169)
T smart00650 15 DTVLEIGPGKGALTEELL----ERAARV---TAIEIDPRLAPRLREKFAAADNLTVIHGDALKF 71 (169)
T ss_pred CEEEEECCCccHHHHHHH----hcCCeE---EEEECCHHHHHHHHHHhccCCCEEEEECchhcC
Confidence 489999999999998773 335454 599999999999999864 456777776553
No 68
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=92.51 E-value=0.52 Score=52.07 Aligned_cols=43 Identities=23% Similarity=0.323 Sum_probs=32.8
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
+..++||+|||.|++..-+ ...|..+ .++|+++.++...+.|.
T Consensus 182 ~g~~vLDp~cGtG~~liea----a~~~~~v---~g~Di~~~~~~~a~~nl 224 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEA----GLMGAKV---IGCDIDWKMVAGARINL 224 (329)
T ss_pred CcCEEEECCCCCCHHHHHH----HHhCCeE---EEEcCCHHHHHHHHHHH
Confidence 3458999999999876543 3456654 59999999988777764
No 69
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=92.50 E-value=0.31 Score=55.99 Aligned_cols=44 Identities=20% Similarity=0.292 Sum_probs=34.3
Q ss_pred CcceeccccccchhHHHHHHhhhhc--CCceeeEEEEecCHHHHHHHHHhCC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLS--GVKLVTRWAIDINPHACKSLKFNHP 310 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~a--G~~~~~~~ave~~~~a~~t~~~N~p 310 (782)
.-++||+|||.||.++-+. ... +.++ .|+|+++..++..+.|..
T Consensus 238 g~~VLD~cagpGgkt~~la---~~~~~~g~V---~a~Dis~~rl~~~~~n~~ 283 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIA---ELMKDQGKI---LAVDISREKIQLVEKHAK 283 (431)
T ss_pred CCEEEEeCCCccHHHHHHH---HHcCCCCEE---EEEECCHHHHHHHHHHHH
Confidence 4589999999999998774 232 3343 599999999999988854
No 70
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=92.19 E-value=0.87 Score=47.62 Aligned_cols=44 Identities=30% Similarity=0.443 Sum_probs=33.1
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
..++||+.||.|.++.-+.. ...+..+ .++|+++.+++..+.|.
T Consensus 88 ~~~ilDig~G~G~~~~~l~~--~~~~~~v---~~iD~~~~~~~~a~~~~ 131 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAK--ERPDARV---TAVDISPEALAVARKNA 131 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHH--HCCCCEE---EEEECCHHHHHHHHHHH
Confidence 45899999999998877732 2224443 59999999998888764
No 71
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=92.09 E-value=0.29 Score=53.58 Aligned_cols=43 Identities=26% Similarity=0.451 Sum_probs=34.0
Q ss_pred cceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
.++||++||.|.++..+.. ...+.++ .|+|+++.|++..+.|.
T Consensus 135 ~~VLDlG~GsG~iai~la~--~~p~~~V---~avDis~~al~~A~~n~ 177 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAY--AFPDAEV---DAVDISPDALAVAEINI 177 (307)
T ss_pred CEEEEEechhhHHHHHHHH--HCCCCEE---EEEeCCHHHHHHHHHHH
Confidence 4799999999999888732 2224444 59999999999999885
No 72
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=91.68 E-value=1 Score=38.57 Aligned_cols=39 Identities=33% Similarity=0.447 Sum_probs=29.7
Q ss_pred ceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHH
Q 003974 263 SLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKF 307 (782)
Q Consensus 263 ~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~ 307 (782)
+++|+.||.|+++..+. ...+.+ ..++|+++.+....+.
T Consensus 1 ~ildig~G~G~~~~~~~---~~~~~~---~~~~d~~~~~~~~~~~ 39 (107)
T cd02440 1 RVLDLGCGTGALALALA---SGPGAR---VTGVDISPVALELARK 39 (107)
T ss_pred CeEEEcCCccHHHHHHh---cCCCCE---EEEEeCCHHHHHHHHH
Confidence 57999999999988884 223333 4699999999887773
No 73
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=91.37 E-value=0.28 Score=44.43 Aligned_cols=54 Identities=24% Similarity=0.340 Sum_probs=42.2
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC------CCCcccccch
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH------PETKVRNEAA 319 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~------p~~~~~~~d~ 319 (782)
.-++|||-||.|.++.-|.. ...|.+++ |||+++.+++..+.|. ++..++.+|+
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~--~~~~~~v~---gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~ 61 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALAR--LFPGARVV---GVDISPEMLEIARERAAEEGLSDRITFVQGDA 61 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHH--HHTTSEEE---EEESSHHHHHHHHHHHHHTTTTTTEEEEESCC
T ss_pred CCEEEEEcCcCCHHHHHHHh--cCCCCEEE---EEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc
Confidence 35899999999999988831 23788864 9999999999999987 4455566665
No 74
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=90.63 E-value=0.15 Score=54.46 Aligned_cols=43 Identities=30% Similarity=0.522 Sum_probs=36.5
Q ss_pred cceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
-.++|||||+|=+.+-| .-.||.+.+ +|+|+||.|+++++.|-
T Consensus 196 eviVDLYAGIGYFTlpf---lV~agAk~V--~A~EwNp~svEaLrR~~ 238 (351)
T KOG1227|consen 196 EVIVDLYAGIGYFTLPF---LVTAGAKTV--FACEWNPWSVEALRRNA 238 (351)
T ss_pred chhhhhhcccceEEeeh---hhccCccEE--EEEecCHHHHHHHHHHH
Confidence 47999999999998844 167898854 89999999999999974
No 75
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=90.62 E-value=0.41 Score=47.57 Aligned_cols=46 Identities=35% Similarity=0.362 Sum_probs=36.1
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP 310 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p 310 (782)
..-++|||.||+|.++.-+ ...+-... +.++|+++.|++..+.|..
T Consensus 31 ~~~~vLDlG~G~G~i~~~l----a~~~~~~~-v~~vDi~~~a~~~a~~n~~ 76 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLAL----AKRGPDAK-VTAVDINPDALELAKRNAE 76 (170)
T ss_dssp TTCEEEEETSTTSHHHHHH----HHTSTCEE-EEEEESBHHHHHHHHHHHH
T ss_pred cCCeEEEecCChHHHHHHH----HHhCCCCE-EEEEcCCHHHHHHHHHHHH
Confidence 4458999999999998877 34444432 4699999999999999853
No 76
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=90.43 E-value=0.63 Score=50.39 Aligned_cols=42 Identities=29% Similarity=0.315 Sum_probs=32.9
Q ss_pred cceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
-+||||||=.||+|+-. ..+|..-+ .+||.++.|.+..+.|+
T Consensus 125 krvLnlFsYTGgfsv~A----a~gGA~~v--~~VD~S~~al~~a~~N~ 166 (286)
T PF10672_consen 125 KRVLNLFSYTGGFSVAA----AAGGAKEV--VSVDSSKRALEWAKENA 166 (286)
T ss_dssp CEEEEET-TTTHHHHHH----HHTTESEE--EEEES-HHHHHHHHHHH
T ss_pred CceEEecCCCCHHHHHH----HHCCCCEE--EEEeCCHHHHHHHHHHH
Confidence 49999999999888754 67887544 59999999999988885
No 77
>PRK03612 spermidine synthase; Provisional
Probab=90.40 E-value=2.1 Score=50.45 Aligned_cols=87 Identities=14% Similarity=0.053 Sum_probs=53.7
Q ss_pred CCccEEEecCCchhhcccCcCCCCCccccccccchH-HHHH-HHHHHhCCcEEEeccccccccccccchHHHHHHHHhcC
Q 003974 444 GDVDFICGGPPCQGVSGFNRFRNPQAALEDIKNRQL-LVFM-DVIEYLKPKYVLMENVVDILKFSGGFLARYAVGRLVSM 521 (782)
Q Consensus 444 ~~vDvl~ggpPCQ~fS~ag~~~~~~~~~~d~r~~L~-~~~~-~ii~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~ 521 (782)
..+|+|+..+|-...... +.|+ .+++ .+.+.++|.-+++=|...-. .....+..+.+.+++.
T Consensus 372 ~~fDvIi~D~~~~~~~~~--------------~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~--~~~~~~~~i~~~l~~~ 435 (521)
T PRK03612 372 EKFDVIIVDLPDPSNPAL--------------GKLYSVEFYRLLKRRLAPDGLLVVQSTSPY--FAPKAFWSIEATLEAA 435 (521)
T ss_pred CCCCEEEEeCCCCCCcch--------------hccchHHHHHHHHHhcCCCeEEEEecCCcc--cchHHHHHHHHHHHHc
Confidence 478999998764221100 1122 2344 44567899888876653221 1233566788999999
Q ss_pred CcceEEEEEecccCCCCccccEEEEEEecC
Q 003974 522 DYQTRLGIMAAGSYGLPQFRLRVFLWGARP 551 (782)
Q Consensus 522 GY~v~~~ilnA~~yGvPQ~R~R~flig~~~ 551 (782)
|+.+.....+--.|| ..-|++|++.
T Consensus 436 gf~v~~~~~~vps~g-----~w~f~~as~~ 460 (521)
T PRK03612 436 GLATTPYHVNVPSFG-----EWGFVLAGAG 460 (521)
T ss_pred CCEEEEEEeCCCCcc-----hhHHHeeeCC
Confidence 996666666656664 5778888764
No 78
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=89.96 E-value=0.36 Score=52.20 Aligned_cols=44 Identities=32% Similarity=0.436 Sum_probs=35.4
Q ss_pred ceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCC
Q 003974 263 SLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPE 311 (782)
Q Consensus 263 ~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~ 311 (782)
++|||+||.|..+.++ ...+-.. .++|+|+++.|++.-+.|-..
T Consensus 113 ~ilDlGTGSG~iai~l----a~~~~~~-~V~a~Dis~~Al~~A~~Na~~ 156 (280)
T COG2890 113 RILDLGTGSGAIAIAL----AKEGPDA-EVIAVDISPDALALARENAER 156 (280)
T ss_pred cEEEecCChHHHHHHH----HhhCcCC-eEEEEECCHHHHHHHHHHHHH
Confidence 8999999999999988 4444322 347999999999999998543
No 79
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=89.87 E-value=0.48 Score=54.32 Aligned_cols=45 Identities=27% Similarity=0.293 Sum_probs=35.2
Q ss_pred CCcceeccccccchhHHHHHHhhhhcC-CceeeEEEEecCHHHHHHHHHhCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSG-VKLVTRWAIDINPHACKSLKFNHP 310 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG-~~~~~~~ave~~~~a~~t~~~N~p 310 (782)
+.-++||++||.||.++-+. +..| .+ ++|+|+++..++..+.|..
T Consensus 238 ~g~~VLDlcag~G~kt~~la---~~~~~~~---v~a~D~~~~~l~~~~~n~~ 283 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHIL---ELAPQAQ---VVALDIHEHRLKRVYENLK 283 (426)
T ss_pred CCCeEEEeCCCccHHHHHHH---HHcCCCe---EEEEeCCHHHHHHHHHHHH
Confidence 34589999999999998764 3333 23 3699999999999988864
No 80
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=89.60 E-value=0.45 Score=50.52 Aligned_cols=45 Identities=36% Similarity=0.288 Sum_probs=35.2
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP 310 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p 310 (782)
...++||+||.|++|+++- +..+ -.++-|||..+.|+..-..|.-
T Consensus 149 ~~~ildlgtGSGaIslsll---~~L~--~~~v~AiD~S~~Ai~La~eN~q 193 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLL---HGLP--QCTVTAIDVSKAAIKLAKENAQ 193 (328)
T ss_pred cceEEEecCCccHHHHHHH---hcCC--CceEEEEeccHHHHHHHHHHHH
Confidence 3479999999999999994 3333 2345699999999998888753
No 81
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=89.39 E-value=0.87 Score=52.78 Aligned_cols=47 Identities=19% Similarity=0.170 Sum_probs=35.6
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP 310 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p 310 (782)
+..+|||+|||.||-|+-+..-+...| .++|+|+++.-++.++.|.-
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g----~lvA~D~~~~R~~~L~~nl~ 159 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQG----AIVANEYSASRVKVLHANIS 159 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCC----EEEEEeCCHHHHHHHHHHHH
Confidence 456899999999999988743222234 23699999999999988853
No 82
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=89.29 E-value=0.51 Score=45.69 Aligned_cols=59 Identities=20% Similarity=0.258 Sum_probs=42.5
Q ss_pred CCCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHh-----CCCCcccccchHH
Q 003974 259 QPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFN-----HPETKVRNEAADD 321 (782)
Q Consensus 259 ~~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N-----~p~~~~~~~d~~~ 321 (782)
+...++|||.||.|.+...|.. ....+.++ .+||+++.+++..+.+ .++.....+|+.+
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~-~~~~~~~i---~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~ 65 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAK-ELNPGAKI---IGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED 65 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHH-HSTTTSEE---EEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC
T ss_pred CCCCEEEEecCcCcHHHHHHHH-hcCCCCEE---EEEECcHHHHHHhhcccccccccccceEEeehhc
Confidence 3567999999999999998831 01235554 5999999999988874 4456677777765
No 83
>PRK07402 precorrin-6B methylase; Provisional
Probab=89.17 E-value=0.71 Score=46.81 Aligned_cols=56 Identities=16% Similarity=0.233 Sum_probs=39.7
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC-----CCCcccccchHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADD 321 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~-----p~~~~~~~d~~~ 321 (782)
.-++||++||.|.++..+.. ...+.++ .|+|+++.+++..+.|. .+..+++.|+.+
T Consensus 41 ~~~VLDiG~G~G~~~~~la~--~~~~~~V---~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~ 101 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGL--LCPKGRV---IAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPE 101 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHH--HCCCCEE---EEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHH
Confidence 35899999999998877731 1123444 59999999999888874 334566666644
No 84
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=88.82 E-value=0.65 Score=49.45 Aligned_cols=46 Identities=28% Similarity=0.379 Sum_probs=34.3
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP 310 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p 310 (782)
...++||+.||.|..+.-+.. .....+ +.++|+++.|++..+.|..
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~--~~~~~~---v~~iDis~~~l~~a~~n~~ 153 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAK--ERPDAE---VTAVDISPEALAVARRNAK 153 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHH--HCCCCE---EEEEECCHHHHHHHHHHHH
Confidence 456899999999998877732 111233 3699999999999988853
No 85
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=88.46 E-value=0.94 Score=51.49 Aligned_cols=43 Identities=26% Similarity=0.335 Sum_probs=33.6
Q ss_pred cceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
.++|||+||.|.++..+.. +..+.++ .|+|+++.|++..+.|.
T Consensus 253 ~rVLDLGcGSG~IaiaLA~--~~p~a~V---tAVDiS~~ALe~AreNa 295 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVAL--ERPDAFV---RASDISPPALETARKNA 295 (423)
T ss_pred CEEEEEeChhhHHHHHHHH--hCCCCEE---EEEECCHHHHHHHHHHH
Confidence 3899999999998877631 2234444 59999999999999885
No 86
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=87.62 E-value=0.66 Score=49.85 Aligned_cols=55 Identities=18% Similarity=0.199 Sum_probs=43.0
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC--CCCcccccchHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH--PETKVRNEAADDF 322 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~--p~~~~~~~d~~~~ 322 (782)
.-++||+-||.|.++.-|. ..|-++ .|+|+|+.+++..+.|+ ++..++++|+.++
T Consensus 43 ~~~VLEiG~G~G~lt~~L~----~~~~~v---~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~ 99 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLL----ERAAKV---TAVEIDRDLAPILAETFAEDNLTIIEGDALKV 99 (272)
T ss_pred cCeEEEeCCCccHHHHHHH----HhCCcE---EEEECCHHHHHHHHHhhccCceEEEEChhhcC
Confidence 3589999999999998883 334454 49999999999999887 4566777776553
No 87
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=86.55 E-value=0.96 Score=48.97 Aligned_cols=44 Identities=25% Similarity=0.413 Sum_probs=34.6
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
..++||++||.|+++..+.. ...+.++ .|+|+++.|++..+.|.
T Consensus 122 ~~~vLDlG~GsG~i~~~la~--~~~~~~v---~avDis~~al~~A~~n~ 165 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAY--AFPEAEV---DAVDISPDALAVAEINI 165 (284)
T ss_pred CCEEEEEeCchhHHHHHHHH--HCCCCEE---EEEECCHHHHHHHHHHH
Confidence 35899999999999888742 2224554 49999999999999885
No 88
>PRK01581 speE spermidine synthase; Validated
Probab=86.03 E-value=17 Score=40.79 Aligned_cols=92 Identities=10% Similarity=0.015 Sum_probs=55.8
Q ss_pred CCccEEEecCCchhhcccCcCCCCCccccccccchH-HHHHH-HHHHhCCcEEEeccccccccccccchHHHHHHHHhcC
Q 003974 444 GDVDFICGGPPCQGVSGFNRFRNPQAALEDIKNRQL-LVFMD-VIEYLKPKYVLMENVVDILKFSGGFLARYAVGRLVSM 521 (782)
Q Consensus 444 ~~vDvl~ggpPCQ~fS~ag~~~~~~~~~~d~r~~L~-~~~~~-ii~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~ 521 (782)
+.+|+|+..+| .+. + ..-+.|+ .+|++ +.+.++|.-+++=+...... ....+..+.+.|...
T Consensus 225 ~~YDVIIvDl~-DP~---~----------~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~--~~~~~~~i~~tL~~a 288 (374)
T PRK01581 225 SLYDVIIIDFP-DPA---T----------ELLSTLYTSELFARIATFLTEDGAFVCQSNSPAD--APLVYWSIGNTIEHA 288 (374)
T ss_pred CCccEEEEcCC-Ccc---c----------cchhhhhHHHHHHHHHHhcCCCcEEEEecCChhh--hHHHHHHHHHHHHHh
Confidence 47899998865 111 1 0112344 34444 45678898776554322211 122445578888999
Q ss_pred CcceEEEEEecccCCCCccccEEEEEEecCCCCC
Q 003974 522 DYQTRLGIMAAGSYGLPQFRLRVFLWGARPFKKL 555 (782)
Q Consensus 522 GY~v~~~ilnA~~yGvPQ~R~R~flig~~~~~~~ 555 (782)
|+.+.......-.||.. ..|++|++....+
T Consensus 289 f~~v~~y~t~vPsyg~~----WgF~~as~~~~~~ 318 (374)
T PRK01581 289 GLTVKSYHTIVPSFGTD----WGFHIAANSAYVL 318 (374)
T ss_pred CCceEEEEEecCCCCCc----eEEEEEeCCcccc
Confidence 99988777777777652 8899998765433
No 89
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=85.92 E-value=0.84 Score=48.39 Aligned_cols=54 Identities=24% Similarity=0.250 Sum_probs=42.1
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC---CCCcccccchHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH---PETKVRNEAADD 321 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~---p~~~~~~~d~~~ 321 (782)
.-++||+.||.|.++.-|. ..+-.+ .|+|+|+..++..+.++ ++..+.++|+..
T Consensus 30 ~~~VLEiG~G~G~lt~~L~----~~~~~v---~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~ 86 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLL----KRAKKV---TAIEIDPRLAEILRKLLSLYERLEVIEGDALK 86 (253)
T ss_pred cCEEEEeCCCCCHHHHHHH----HhCCcE---EEEECCHHHHHHHHHHhCcCCcEEEEECchhc
Confidence 4589999999999999883 444443 59999999999999886 455667777654
No 90
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=85.19 E-value=1.2 Score=45.70 Aligned_cols=54 Identities=20% Similarity=0.209 Sum_probs=42.5
Q ss_pred CcceeccccccchhHHHHHHhhhh-cCCceeeEEEEecCHHHHHHHHHhCCCCcccccchH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASL-SGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAAD 320 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~-aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~ 320 (782)
.-++||+=||.|-+...|. .. .|.++ .|||+++.+++..+.|+++..+...|+.
T Consensus 44 ~~~VLDiGCG~G~~~~~L~---~~~~~~~v---~giDiS~~~l~~A~~~~~~~~~~~~d~~ 98 (204)
T TIGR03587 44 IASILELGANIGMNLAALK---RLLPFKHI---YGVEINEYAVEKAKAYLPNINIIQGSLF 98 (204)
T ss_pred CCcEEEEecCCCHHHHHHH---HhCCCCeE---EEEECCHHHHHHHHhhCCCCcEEEeecc
Confidence 3479999999999998883 22 24553 5999999999999999988777766543
No 91
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=84.60 E-value=1 Score=48.01 Aligned_cols=54 Identities=20% Similarity=0.337 Sum_probs=41.4
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC---CCcccccchHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP---ETKVRNEAADD 321 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p---~~~~~~~d~~~ 321 (782)
.-++||+.||.|.++.-|. ..+.++ .|+|+|+..++..+.+.. +..++++|+..
T Consensus 30 ~~~VLEIG~G~G~lt~~L~----~~~~~v---~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~ 86 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELA----KRAKKV---YAIELDPRLAEFLRDDEIAAGNVEIIEGDALK 86 (258)
T ss_pred cCeEEEEeCccCHHHHHHH----HhCCEE---EEEECCHHHHHHHHHHhccCCCEEEEEecccc
Confidence 3589999999999999884 335554 599999999999988753 45566766644
No 92
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=84.37 E-value=2.1 Score=43.49 Aligned_cols=57 Identities=21% Similarity=0.276 Sum_probs=38.8
Q ss_pred CCcceeccccccchhHHHHHHhhhhcC--CceeeEEEEecCHHHHHHHHHhC------CCCcccccchHHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSG--VKLVTRWAIDINPHACKSLKFNH------PETKVRNEAADDF 322 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG--~~~~~~~ave~~~~a~~t~~~N~------p~~~~~~~d~~~~ 322 (782)
+.-++||++||+|.++..+. +..| .++ .|+|+++.+++..+.|. .+..++..|+.++
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a---~~~~~~~~v---~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~ 104 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEAS---LLVGETGKV---YAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI 104 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHH---HHhCCCCEE---EEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh
Confidence 34589999999999998763 2333 333 59999999998776662 2344555565543
No 93
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=83.20 E-value=1.8 Score=47.72 Aligned_cols=47 Identities=23% Similarity=0.314 Sum_probs=37.0
Q ss_pred CCCCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 258 GQPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 258 ~~~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
.....++|||-||+|++..-| +++..|.+++ |+|+|+.|++.-+.|.
T Consensus 112 ~~~~~~vLDIGtGag~I~~lL--a~~~~~~~~~---atDId~~Al~~A~~Nv 158 (321)
T PRK11727 112 RGANVRVLDIGVGANCIYPLI--GVHEYGWRFV---GSDIDPQALASAQAII 158 (321)
T ss_pred CCCCceEEEecCCccHHHHHH--HhhCCCCEEE---EEeCCHHHHHHHHHHH
Confidence 345689999999999877544 4455677764 9999999999998874
No 94
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=83.07 E-value=1.7 Score=43.58 Aligned_cols=44 Identities=27% Similarity=0.442 Sum_probs=33.7
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
..++||+.||+|.++..+.. ...+.++ .++|+++.+++..+.|.
T Consensus 32 ~~~vLDiG~G~G~~~~~la~--~~~~~~v---~~vD~s~~~~~~a~~n~ 75 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAAL--QFPSLQV---TAIERNPDALRLIKENR 75 (187)
T ss_pred CCEEEEECCcCCHHHHHHHH--HCCCCEE---EEEECCHHHHHHHHHHH
Confidence 45899999999999988731 1223454 49999999999888775
No 95
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=82.97 E-value=1.9 Score=38.51 Aligned_cols=57 Identities=25% Similarity=0.338 Sum_probs=38.5
Q ss_pred eeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC----CCCcccccchHHH
Q 003974 264 LLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH----PETKVRNEAADDF 322 (782)
Q Consensus 264 ~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~----p~~~~~~~d~~~~ 322 (782)
+|||-||.|-....|...+ .+|... ..+++|+++.+.+..+.+. +.+..+..|+.++
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~~~~~~-~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l 61 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-DAGPSS-RVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDL 61 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS------S-EEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCH
T ss_pred CEEeecCCcHHHHHHHHHh-hhcccc-eEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHC
Confidence 6899999999998885332 335322 3479999999999888887 6677777787664
No 96
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=82.89 E-value=3.8 Score=47.51 Aligned_cols=39 Identities=23% Similarity=0.270 Sum_probs=30.2
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLK 306 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~ 306 (782)
..++|||.||.|.++..|. ..+.++ .|||+++.+++.-+
T Consensus 38 ~~~vLDlGcG~G~~~~~la----~~~~~v---~giD~s~~~l~~a~ 76 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELA----KKAGQV---IALDFIESVIKKNE 76 (475)
T ss_pred CCEEEEeCCCcCHHHHHHH----hhCCEE---EEEeCCHHHHHHHH
Confidence 3489999999999999883 334454 49999999986543
No 97
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=82.53 E-value=2.5 Score=44.72 Aligned_cols=56 Identities=20% Similarity=0.240 Sum_probs=42.9
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC------CCcccccchHHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP------ETKVRNEAADDF 322 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p------~~~~~~~d~~~~ 322 (782)
...++||+-||.|.++.-| ...|.+++ ++|+++.+++..+.+.. +..++..|+.++
T Consensus 44 ~~~~vLDiGcG~G~~a~~l----a~~g~~v~---~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l 105 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKL----AELGHQVI---LCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDI 105 (255)
T ss_pred CCCEEEEeCCCchHHHHHH----HHcCCEEE---EEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHH
Confidence 4569999999999999888 45687754 99999999988887753 334566666654
No 98
>PRK06202 hypothetical protein; Provisional
Probab=82.52 E-value=2.1 Score=44.55 Aligned_cols=50 Identities=30% Similarity=0.363 Sum_probs=37.2
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP 310 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p 310 (782)
...++|||-||.|.++.-|..-+...|.... +.|+|+++.+++..+.+..
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~-v~gvD~s~~~l~~a~~~~~ 109 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLE-VTAIDPDPRAVAFARANPR 109 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcE-EEEEcCCHHHHHHHHhccc
Confidence 4469999999999998877533334565332 3699999999998887753
No 99
>PRK04148 hypothetical protein; Provisional
Probab=82.49 E-value=2.4 Score=40.65 Aligned_cols=51 Identities=22% Similarity=0.207 Sum_probs=38.9
Q ss_pred CCcceeccccccch-hHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccch
Q 003974 260 PEMSLLDLYSGCGA-MSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAA 319 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg-~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~ 319 (782)
..++++|+=+|.|. ++.-| ...|++|+ |+|+++.|++..+.+. +.++..|+
T Consensus 16 ~~~kileIG~GfG~~vA~~L----~~~G~~Vi---aIDi~~~aV~~a~~~~--~~~v~dDl 67 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKL----KESGFDVI---VIDINEKAVEKAKKLG--LNAFVDDL 67 (134)
T ss_pred cCCEEEEEEecCCHHHHHHH----HHCCCEEE---EEECCHHHHHHHHHhC--CeEEECcC
Confidence 34689999999774 66555 67899875 9999999999888875 44555554
No 100
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=82.32 E-value=3 Score=46.73 Aligned_cols=51 Identities=27% Similarity=0.337 Sum_probs=38.6
Q ss_pred CCCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCC
Q 003974 259 QPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPET 312 (782)
Q Consensus 259 ~~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~ 312 (782)
++.-+|||+||+.||=++=+.+-+..-|..| +|+|+++.-.+.++.|.-..
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV---~A~D~~~~Rl~~l~~nl~Rl 205 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIV---VAVDVSPKRLKRLRENLKRL 205 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceE---EEEcCCHHHHHHHHHHHHHc
Confidence 3447999999999999988854333334332 59999999999999986543
No 101
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=82.26 E-value=3.8 Score=42.21 Aligned_cols=47 Identities=19% Similarity=0.252 Sum_probs=34.2
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP 310 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p 310 (782)
+.-++||+.||.|.++.=|. +..|-.. .+++||+++.+.+..+.|..
T Consensus 77 ~~~~VLDiG~GsG~~a~~la---~~~~~~g-~V~~vD~~~~~~~~A~~~~~ 123 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLA---EIVGRDG-LVVSIERIPELAEKAERRLR 123 (215)
T ss_pred CcCEEEEECCCccHHHHHHH---HHhCCCC-EEEEEeCCHHHHHHHHHHHH
Confidence 44689999999999997664 3333221 13699999999888877653
No 102
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=82.22 E-value=2 Score=48.42 Aligned_cols=60 Identities=28% Similarity=0.344 Sum_probs=41.2
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC------C-CCcccccchHHHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH------P-ETKVRNEAADDFL 323 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~------p-~~~~~~~d~~~~~ 323 (782)
.++++||.+||+|--+.=+. .+.+|+. .+|++|+|+.|++..+.|. . ...+.+.|+..+|
T Consensus 49 ~~~~~lDalaasGvR~iRy~--~E~~~~~--~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll 115 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYA--KELAGVD--KVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLL 115 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHH--HH-SSEC--EEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHH
T ss_pred CCceEEeccccccHHHHHHH--HHcCCCC--EEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHh
Confidence 45899999999997555442 2447766 4489999999999999993 1 2356677888875
No 103
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=81.78 E-value=1.8 Score=44.66 Aligned_cols=44 Identities=23% Similarity=0.275 Sum_probs=34.9
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP 310 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p 310 (782)
...++||+.||.|.++.-+ ...|.++ .++|+++.++...+.+.+
T Consensus 55 ~~~~vLDiGcG~G~~~~~l----a~~~~~v---~gvD~s~~~i~~a~~~~~ 98 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIEL----AKRGAIV---KAVDISEQMVQMARNRAQ 98 (219)
T ss_pred CCCEEEEEeCCCCHHHHHH----HHCCCEE---EEEECCHHHHHHHHHHHH
Confidence 3568999999999988777 3456554 599999999988887754
No 104
>KOG2730 consensus Methylase [General function prediction only]
Probab=81.44 E-value=1.2 Score=45.90 Aligned_cols=41 Identities=27% Similarity=0.466 Sum_probs=33.5
Q ss_pred cceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
-.++|-|||+||-.+=| ..-|-.| .|||+|+.-+..-++|-
T Consensus 96 ~~iidaf~g~gGntiqf----a~~~~~V---isIdiDPikIa~AkhNa 136 (263)
T KOG2730|consen 96 EVIVDAFCGVGGNTIQF----ALQGPYV---IAIDIDPVKIACARHNA 136 (263)
T ss_pred chhhhhhhcCCchHHHH----HHhCCeE---EEEeccHHHHHHHhccc
Confidence 37899999999999888 4556554 49999999988888874
No 105
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=81.43 E-value=2.5 Score=44.63 Aligned_cols=58 Identities=16% Similarity=0.203 Sum_probs=44.7
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchHHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDF 322 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~~ 322 (782)
...++||+-||.|.++.-|.. ...+.++ .+||+++.+++..+.+.++..++..|+..+
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~--~~~~~~v---~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~ 88 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVE--RWPAARI---TGIDSSPAMLAEARSRLPDCQFVEADIASW 88 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHH--HCCCCEE---EEEECCHHHHHHHHHhCCCCeEEECchhcc
Confidence 346899999999999877631 2224444 599999999999999998888888887653
No 106
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=81.37 E-value=1.8 Score=46.72 Aligned_cols=43 Identities=28% Similarity=0.481 Sum_probs=33.9
Q ss_pred cceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
.++|||+||.|.++..+.. ...+.++ .|+|+++.|++..+.|.
T Consensus 116 ~~vLDlG~GsG~i~l~la~--~~~~~~v---~avDis~~al~~a~~n~ 158 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAY--EFPNAEV---IAVDISPDALAVAEENA 158 (284)
T ss_pred CEEEEEeccHhHHHHHHHH--HCCCCEE---EEEECCHHHHHHHHHHH
Confidence 5899999999998887742 2234554 59999999999999874
No 107
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=81.20 E-value=1.9 Score=45.32 Aligned_cols=54 Identities=19% Similarity=0.171 Sum_probs=42.0
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADD 321 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~ 321 (782)
.-++||+-||.|.++.-| ...|..+ .++|+++.+++..+.+.+...+...|++.
T Consensus 43 ~~~vLDiGcG~G~~~~~l----~~~~~~v---~~~D~s~~~l~~a~~~~~~~~~~~~d~~~ 96 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYW----RERGSQV---TALDLSPPMLAQARQKDAADHYLAGDIES 96 (251)
T ss_pred CCeEEEeeCCCCHHHHHH----HHcCCeE---EEEECCHHHHHHHHhhCCCCCEEEcCccc
Confidence 357999999999887766 3456654 59999999999999988765566666654
No 108
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=80.99 E-value=2.2 Score=46.38 Aligned_cols=45 Identities=27% Similarity=0.429 Sum_probs=38.7
Q ss_pred CCCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 259 QPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 259 ~~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
++..++||+=||.|-+|.+. ...|..-+ .|+|+|+.|.++-+.|.
T Consensus 161 ~~g~~vlDvGcGSGILaIAa----~kLGA~~v--~g~DiDp~AV~aa~eNa 205 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAA----AKLGAKKV--VGVDIDPQAVEAARENA 205 (300)
T ss_pred cCCCEEEEecCChhHHHHHH----HHcCCceE--EEecCCHHHHHHHHHHH
Confidence 36789999999999999877 78887744 69999999999999874
No 109
>PRK10742 putative methyltransferase; Provisional
Probab=80.24 E-value=2.8 Score=44.37 Aligned_cols=44 Identities=18% Similarity=0.195 Sum_probs=35.5
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPE 311 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~ 311 (782)
..++||+|+|.|.++.=+ ...|.+|+ +||.++.++..++.|.-.
T Consensus 89 ~p~VLD~TAGlG~Da~~l----as~G~~V~---~vEr~p~vaalL~dgL~r 132 (250)
T PRK10742 89 LPDVVDATAGLGRDAFVL----ASVGCRVR---MLERNPVVAALLDDGLAR 132 (250)
T ss_pred CCEEEECCCCccHHHHHH----HHcCCEEE---EEECCHHHHHHHHHHHHH
Confidence 359999999999877544 56788854 999999999999987543
No 110
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=79.48 E-value=2.8 Score=46.14 Aligned_cols=45 Identities=22% Similarity=0.304 Sum_probs=37.0
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPE 311 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~ 311 (782)
+..++||+.||.|.++.-| ...|.+++ ++|+++.+++..+.|.+.
T Consensus 144 ~~~~VLDlGcGtG~~a~~l----a~~g~~V~---gvD~S~~ml~~A~~~~~~ 188 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPL----ALEGAIVS---ASDISAAMVAEAERRAKE 188 (315)
T ss_pred CCCEEEEecCCCCHHHHHH----HHCCCEEE---EEECCHHHHHHHHHHHHh
Confidence 3569999999999999888 45687754 999999999988887643
No 111
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=79.48 E-value=2.2 Score=46.48 Aligned_cols=43 Identities=33% Similarity=0.427 Sum_probs=35.3
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
..+|||+=||.|-++.+. ...|.+-+ .|+|+|+.|+++-+.|.
T Consensus 162 g~~vLDvG~GSGILaiaA----~klGA~~v--~a~DiDp~Av~~a~~N~ 204 (295)
T PF06325_consen 162 GKRVLDVGCGSGILAIAA----AKLGAKKV--VAIDIDPLAVEAARENA 204 (295)
T ss_dssp TSEEEEES-TTSHHHHHH----HHTTBSEE--EEEESSCHHHHHHHHHH
T ss_pred CCEEEEeCCcHHHHHHHH----HHcCCCeE--EEecCCHHHHHHHHHHH
Confidence 349999999999988765 67888744 69999999999998874
No 112
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=79.23 E-value=3 Score=42.42 Aligned_cols=42 Identities=31% Similarity=0.264 Sum_probs=34.5
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
..++||+-||.|.++.-| ...|.+| .|+|+++.+++..+.+.
T Consensus 31 ~~~vLDiGcG~G~~a~~L----a~~g~~V---~gvD~S~~~i~~a~~~~ 72 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYL----AANGFDV---TAWDKNPMSIANLERIK 72 (197)
T ss_pred CCcEEEECCCCCHHHHHH----HHCCCEE---EEEeCCHHHHHHHHHHH
Confidence 468999999999999877 4568775 49999999988877653
No 113
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=79.01 E-value=2.9 Score=45.31 Aligned_cols=44 Identities=27% Similarity=0.353 Sum_probs=35.0
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
...++||+.||.|.++..+ ...|..- +.|+|+++.|++.-+.|.
T Consensus 159 ~g~~VLDvGcGsG~lai~a----a~~g~~~--V~avDid~~al~~a~~n~ 202 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAA----LKLGAAK--VVGIDIDPLAVESARKNA 202 (288)
T ss_pred CCCEEEEeCCChhHHHHHH----HHcCCCe--EEEEECCHHHHHHHHHHH
Confidence 3469999999999988766 4556542 369999999999888875
No 114
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=78.85 E-value=3 Score=42.00 Aligned_cols=56 Identities=23% Similarity=0.259 Sum_probs=37.7
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHh-----CCCCcccccchHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFN-----HPETKVRNEAADD 321 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N-----~p~~~~~~~d~~~ 321 (782)
..++||+-||.|.++.-|.. ...+.++ .|||.++.+++..+.| .++..++.+|+++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~--~~~~~~V---~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~ 103 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAI--ARPELKL---TLLESNHKKVAFLREVKAELGLNNVEIVNGRAED 103 (181)
T ss_pred CCeEEEecCCCCccHHHHHH--HCCCCeE---EEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhh
Confidence 45899999999988876631 2223443 5999999877665544 2345666767655
No 115
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=78.63 E-value=3 Score=44.14 Aligned_cols=44 Identities=30% Similarity=0.477 Sum_probs=35.0
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
...++||+.||.|.++..+ ...|..- +.|+|+++.+++..+.|.
T Consensus 119 ~~~~VLDiGcGsG~l~i~~----~~~g~~~--v~giDis~~~l~~A~~n~ 162 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAA----AKLGAKK--VLAVDIDPQAVEAARENA 162 (250)
T ss_pred CCCEEEEeCCcHHHHHHHH----HHcCCCe--EEEEECCHHHHHHHHHHH
Confidence 4568999999999888765 4567652 369999999999888875
No 116
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=78.48 E-value=3.4 Score=45.59 Aligned_cols=56 Identities=16% Similarity=0.257 Sum_probs=40.4
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC------CCcccccchHHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP------ETKVRNEAADDF 322 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p------~~~~~~~d~~~~ 322 (782)
...++||+-||.|.++.-| ...|.++ ++||.++..++..+.+.. ...++.+|++++
T Consensus 131 ~g~~ILDIGCG~G~~s~~L----a~~g~~V---~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l 192 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPL----ARMGATV---TGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKL 192 (322)
T ss_pred CCCEEEEeeCCCCHHHHHH----HHcCCEE---EEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHh
Confidence 3468999999999988766 4567764 599999999988876531 234455565543
No 117
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=77.95 E-value=4.1 Score=37.12 Aligned_cols=43 Identities=26% Similarity=0.413 Sum_probs=32.3
Q ss_pred CcceeccccccchhHHHHHHhhhh-cCCceeeEEEEecCHHHHHHHHHhC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASL-SGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~-aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
..++|||.||.|.++.=|. +. .+.++ .++|+++.+++..+.|.
T Consensus 20 ~~~vldlG~G~G~~~~~l~---~~~~~~~v---~~vD~s~~~~~~a~~~~ 63 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAA---RLVPNGRV---YAIERNPEALRLIERNA 63 (124)
T ss_pred CCEEEEeCCCCCHHHHHHH---HHCCCceE---EEEcCCHHHHHHHHHHH
Confidence 3489999999999987663 32 23333 69999999998877653
No 118
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=77.70 E-value=3.2 Score=45.20 Aligned_cols=54 Identities=24% Similarity=0.312 Sum_probs=41.1
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC------CCCcccccchHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH------PETKVRNEAADD 321 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~------p~~~~~~~d~~~ 321 (782)
.-++||+-||.|.++.-|. ..+.++ .|+|+|+.+++..+.|+ ++..++.+|+..
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll----~~~~~V---~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~ 96 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLL----QLAKKV---IAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALK 96 (294)
T ss_pred cCEEEEecCchHHHHHHHH----HhCCcE---EEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhh
Confidence 3589999999999998773 334444 59999999999888764 346677877654
No 119
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=77.42 E-value=3 Score=43.78 Aligned_cols=49 Identities=27% Similarity=0.393 Sum_probs=41.1
Q ss_pred CCCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcc
Q 003974 259 QPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKV 314 (782)
Q Consensus 259 ~~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~ 314 (782)
-..+++||+=||.|-+|.-| ++.|..|. |+|+.+.++++-+..-.+..+
T Consensus 58 l~g~~vLDvGCGgG~Lse~m----Ar~Ga~Vt---giD~se~~I~~Ak~ha~e~gv 106 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPL----ARLGASVT---GIDASEKPIEVAKLHALESGV 106 (243)
T ss_pred CCCCeEEEecCCccHhhHHH----HHCCCeeE---EecCChHHHHHHHHhhhhccc
Confidence 46789999999999888877 78998865 999999999999987666543
No 120
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=76.81 E-value=10 Score=41.11 Aligned_cols=47 Identities=32% Similarity=0.305 Sum_probs=35.6
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP 310 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p 310 (782)
+..++||+|||.||=++-+.+-+...| .+.|+|++..-+..++.|.-
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g----~i~A~D~~~~Rl~~l~~~~~ 131 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKG----EIVANDISPKRLKRLKENLK 131 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTS----EEEEEESSHHHHHHHHHHHH
T ss_pred ccccccccccCCCCceeeeeecccchh----HHHHhccCHHHHHHHHHHHH
Confidence 445699999999999988754333223 23699999999999988753
No 121
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=76.41 E-value=3.4 Score=42.77 Aligned_cols=39 Identities=10% Similarity=0.128 Sum_probs=33.5
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLK 306 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~ 306 (782)
.-++||+.||.|--+.-| +..|++|+ |||+++.|++...
T Consensus 35 ~~rvLd~GCG~G~da~~L----A~~G~~V~---gvD~S~~Ai~~~~ 73 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWL----AEQGHRVL---GVELSEIAVEQFF 73 (213)
T ss_pred CCeEEEeCCCchhHHHHH----HhCCCeEE---EEeCCHHHHHHHH
Confidence 359999999999888777 67899975 9999999999753
No 122
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=75.65 E-value=3.6 Score=46.45 Aligned_cols=43 Identities=26% Similarity=0.295 Sum_probs=33.1
Q ss_pred cceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
-++|||.||.|.++.-+. .+.-+.++ .+||+++.|+++-+.|.
T Consensus 230 ~~VLDLGCGtGvi~i~la--~~~P~~~V---~~vD~S~~Av~~A~~N~ 272 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLL--DKNPQAKV---VFVDESPMAVASSRLNV 272 (378)
T ss_pred CeEEEEeccccHHHHHHH--HhCCCCEE---EEEECCHHHHHHHHHHH
Confidence 489999999999887662 12224554 59999999999998875
No 123
>PRK14968 putative methyltransferase; Provisional
Probab=75.46 E-value=4.1 Score=40.34 Aligned_cols=42 Identities=29% Similarity=0.397 Sum_probs=33.6
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
.-++||+.||.|.++..+. ..|.++ .++|+++.+.+..+.|.
T Consensus 24 ~~~vLd~G~G~G~~~~~l~----~~~~~v---~~~D~s~~~~~~a~~~~ 65 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAA----KNGKKV---VGVDINPYAVECAKCNA 65 (188)
T ss_pred CCEEEEEccccCHHHHHHH----hhcceE---EEEECCHHHHHHHHHHH
Confidence 3479999999999888773 336654 49999999998887765
No 124
>KOG2748 consensus Uncharacterized conserved protein, contains chromo domain [Chromatin structure and dynamics]
Probab=75.06 E-value=3.2 Score=45.29 Aligned_cols=53 Identities=25% Similarity=0.580 Sum_probs=42.2
Q ss_pred chhHHHHHHHHHhcCCCCCCCCCcceeEEeeccCCCCCCCcccccccchhhhhhHHhHhc
Q 003974 374 NEEFEVERLIAVCYGDPNKTKKPGVYFKVRWKGYGPSEDTWEPIKGLSKCKEKLKEFVTK 433 (782)
Q Consensus 374 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (782)
..-|-++.++.. ++.++.+.|-|.|+|+.+.++||||-+|+-|-+ +|..|-..
T Consensus 8 e~VfAaEsIlkk------RirKGrvEYlVKWkGWs~kyNTWEPEENILDpR-Li~AFe~r 60 (369)
T KOG2748|consen 8 ERVFAAESILKK------RIRKGRVEYLVKWKGWSQKYNTWEPEENILDPR-LIAAFEQR 60 (369)
T ss_pred hhHHHHHHHHHH------HhhccceEEEEEecccccccCccCccccccCHH-HHHHHHhh
Confidence 456777888876 788999999999999999999999999887743 45555433
No 125
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=75.05 E-value=3.8 Score=45.61 Aligned_cols=42 Identities=24% Similarity=0.290 Sum_probs=32.5
Q ss_pred ceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 263 SLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 263 ~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
++|||.||.|.++.-+.. ...+.++ .++|+++.|++.-+.|.
T Consensus 199 ~VLDlGCG~G~ls~~la~--~~p~~~v---~~vDis~~Al~~A~~nl 240 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLAR--HSPKIRL---TLSDVSAAALESSRATL 240 (342)
T ss_pred eEEEeccCcCHHHHHHHH--hCCCCEE---EEEECCHHHHHHHHHHH
Confidence 799999999998877731 2234554 49999999999888765
No 126
>PLN02244 tocopherol O-methyltransferase
Probab=74.78 E-value=3.6 Score=45.66 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=33.9
Q ss_pred CCCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHh
Q 003974 259 QPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFN 308 (782)
Q Consensus 259 ~~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N 308 (782)
....++||+.||.|+++.-|. +..|.+++ +||+++..++..+.+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La---~~~g~~v~---gvD~s~~~i~~a~~~ 160 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLA---RKYGANVK---GITLSPVQAARANAL 160 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHH---HhcCCEEE---EEECCHHHHHHHHHH
Confidence 345689999999999988773 33477654 999999988766654
No 127
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=74.14 E-value=4.8 Score=42.44 Aligned_cols=58 Identities=19% Similarity=0.220 Sum_probs=44.9
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCC-----CcccccchHHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPE-----TKVRNEAADDF 322 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~-----~~~~~~d~~~~ 322 (782)
+..++||+.||.|-++..+. +.+| .. -+.++|+++.=++.-+.-+.+ ...+.+|++.+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~---k~~g-~g-~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~L 113 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLA---KSVG-TG-EVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENL 113 (238)
T ss_pred CCCEEEEecCCccHHHHHHH---HhcC-Cc-eEEEEECCHHHHHHHHHHhhccCccceEEEEechhhC
Confidence 67899999999999999884 5666 33 236999999988888887766 34556777664
No 128
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=73.91 E-value=2.8 Score=47.21 Aligned_cols=60 Identities=30% Similarity=0.452 Sum_probs=47.1
Q ss_pred CCCCCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC------C-CcccccchHHHH
Q 003974 257 IGQPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP------E-TKVRNEAADDFL 323 (782)
Q Consensus 257 ~~~~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p------~-~~~~~~d~~~~~ 323 (782)
+.+..-.+-|+|||+|-++.-+ ..-|. .+.|.|.|+.+.+-++.|.+ . ..++|-|+.+|+
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa----~kK~c---rV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPA----AKKGC---RVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred ccCCcchhhhhhcCcCccccch----hhcCc---EEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 3445568999999999887654 34453 34799999999999999986 3 578889999996
No 129
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=73.87 E-value=5.4 Score=41.87 Aligned_cols=59 Identities=17% Similarity=0.040 Sum_probs=41.6
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC------CCcccccchHHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP------ETKVRNEAADDFL 323 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p------~~~~~~~d~~~~~ 323 (782)
.-++||+.+|+|..++.|..+....| ++ .++|+++.+++..+.|+. ...++.+|+.++|
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g-~v---~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L 133 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDG-RI---TAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSAL 133 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCC-EE---EEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH
Confidence 34899999999987776643322233 44 489999999998888853 3456777876654
No 130
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=73.18 E-value=9.6 Score=38.00 Aligned_cols=65 Identities=25% Similarity=0.314 Sum_probs=57.3
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchHHHHHHHHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDFLSLLKE 328 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~~~~~~~~ 328 (782)
.-+.+|+|=.|.|-++..+ -.-|++-....|+|++++-...+..-+|+..++|+|+.++-..|++
T Consensus 48 sglpVlElGPGTGV~TkaI----L~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e 112 (194)
T COG3963 48 SGLPVLELGPGTGVITKAI----LSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGE 112 (194)
T ss_pred cCCeeEEEcCCccHhHHHH----HhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhh
Confidence 3478999999999999888 5788888888999999999999999999999999999997655554
No 131
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=73.02 E-value=4.7 Score=47.34 Aligned_cols=44 Identities=27% Similarity=0.369 Sum_probs=34.7
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
..++||++||.|.++..+.. ...+.++ .|+|+++.|++..+.|.
T Consensus 139 ~~~VLDlG~GsG~iai~la~--~~p~~~v---~avDis~~al~~A~~N~ 182 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLC--ELPNANV---IATDISLDAIEVAKSNA 182 (506)
T ss_pred CCEEEEccCchhHHHHHHHH--HCCCCeE---EEEECCHHHHHHHHHHH
Confidence 35899999999999887732 2345554 49999999999999884
No 132
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=73.01 E-value=11 Score=37.96 Aligned_cols=40 Identities=35% Similarity=0.385 Sum_probs=30.7
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKS 304 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t 304 (782)
...++++=||.|-.|+-|. +..|- -+...|.|+|+.|+++
T Consensus 44 ~~i~lEIG~GSGvvstfL~---~~i~~-~~~~latDiNp~A~~~ 83 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLA---SVIGP-QALYLATDINPEALEA 83 (209)
T ss_pred ceeEEEecCCcchHHHHHH---HhcCC-CceEEEecCCHHHHHH
Confidence 5678999999999999884 33332 2345899999999876
No 133
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=72.97 E-value=4.7 Score=41.94 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=33.2
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLK 306 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~ 306 (782)
.-++||+.||.|--+.-| ...|++|+ |||+++.|++.+.
T Consensus 38 ~~rvL~~gCG~G~da~~L----A~~G~~V~---avD~s~~Ai~~~~ 76 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWL----AEQGHEVL---GVELSELAVEQFF 76 (218)
T ss_pred CCeEEEeCCCChHhHHHH----HhCCCeEE---EEccCHHHHHHHH
Confidence 359999999999888777 57899975 9999999999764
No 134
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=72.82 E-value=5.3 Score=40.15 Aligned_cols=48 Identities=23% Similarity=0.327 Sum_probs=30.3
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCce-------eeEEEEecCHHHHHHHHHhCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKL-------VTRWAIDINPHACKSLKFNHP 310 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~-------~~~~ave~~~~a~~t~~~N~p 310 (782)
+.-.+||-|||.|.+-.= +|..+.... ...+++|+++.+++.-+.|.-
T Consensus 28 ~~~~vlDP~CGsGtiliE---aa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~ 82 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIE---AALMGANIPPLNDINELKIIGSDIDPKAVRGARENLK 82 (179)
T ss_dssp TTS-EEETT-TTSHHHHH---HHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHH
T ss_pred CCCEEeecCCCCCHHHHH---HHHHhhCcccccccccccEEecCCCHHHHHHHHHHHH
Confidence 345899999999986642 222222111 014799999999999998864
No 135
>PRK04266 fibrillarin; Provisional
Probab=72.39 E-value=6.9 Score=40.92 Aligned_cols=55 Identities=13% Similarity=0.113 Sum_probs=36.4
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHh---CCCCcccccch
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFN---HPETKVRNEAA 319 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N---~p~~~~~~~d~ 319 (782)
+..++||+.||+|+++.-|. ...| .- .++|+|+++.+.+.+..+ .++...+.+|+
T Consensus 72 ~g~~VlD~G~G~G~~~~~la---~~v~-~g-~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~ 129 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVS---DIVE-EG-VVYAVEFAPRPMRELLEVAEERKNIIPILADA 129 (226)
T ss_pred CCCEEEEEccCCCHHHHHHH---HhcC-CC-eEEEEECCHHHHHHHHHHhhhcCCcEEEECCC
Confidence 34589999999999998884 3333 11 347999999877755444 23444444443
No 136
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=72.28 E-value=5.9 Score=40.75 Aligned_cols=44 Identities=30% Similarity=0.468 Sum_probs=35.4
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP 310 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p 310 (782)
+..++||+.||.|.++..| ...|..+ .++|+++.+++..+.+..
T Consensus 63 ~~~~vLDvGcG~G~~~~~l----~~~~~~v---~~~D~s~~~i~~a~~~~~ 106 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPL----ARRGAKV---VASDISPQMVEEARERAP 106 (230)
T ss_pred CCCEEEEEeCCCCHHHHHH----HHcCCEE---EEEECCHHHHHHHHHHHH
Confidence 4569999999999988877 4567653 599999999988887654
No 137
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=71.57 E-value=5.2 Score=43.26 Aligned_cols=40 Identities=35% Similarity=0.395 Sum_probs=33.3
Q ss_pred ceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 263 SLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 263 ~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
++||+-||.|..+.-| ...|++|. |+|+++.|++..+.|.
T Consensus 123 ~vLDlGcG~G~~~~~l----a~~g~~V~---avD~s~~ai~~~~~~~ 162 (287)
T PRK12335 123 KALDLGCGQGRNSLYL----ALLGFDVT---AVDINQQSLENLQEIA 162 (287)
T ss_pred CEEEeCCCCCHHHHHH----HHCCCEEE---EEECCHHHHHHHHHHH
Confidence 8999999999988777 45688754 9999999998877653
No 138
>PLN02823 spermine synthase
Probab=71.42 E-value=89 Score=34.80 Aligned_cols=67 Identities=9% Similarity=-0.051 Sum_probs=41.1
Q ss_pred HHHH--HHHHhCCcEEEeccccccccccccchHHHHHHHHhcCCcceEEEEEecccCCCCccccEEEEEEecC
Q 003974 481 VFMD--VIEYLKPKYVLMENVVDILKFSGGFLARYAVGRLVSMDYQTRLGIMAAGSYGLPQFRLRVFLWGARP 551 (782)
Q Consensus 481 ~~~~--ii~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~ilnA~~yGvPQ~R~R~flig~~~ 551 (782)
+|++ +.+.++|.-+++=|+....-+.....+..+++.|....-.+......--.||. ...|++|++.
T Consensus 200 eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF~~v~~y~~~vPsf~~----~w~f~~aS~~ 268 (336)
T PLN02823 200 SFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVFKYVVPYTAHVPSFAD----TWGWVMASDH 268 (336)
T ss_pred HHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhCCCEEEEEeecCCCCC----ceEEEEEeCC
Confidence 4554 45678999988877643111112335666777777766556555555556654 2678999864
No 139
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=71.27 E-value=5.2 Score=45.10 Aligned_cols=51 Identities=31% Similarity=0.319 Sum_probs=40.7
Q ss_pred CCCCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCC
Q 003974 258 GQPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPET 312 (782)
Q Consensus 258 ~~~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~ 312 (782)
.++..++||+||-.||=++-+..-++.-|+ ++|.|.+..-+.+++.|.+..
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~----I~AnD~n~~r~~~l~~n~~rl 289 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGV----IFANDSNENRLKSLKANLHRL 289 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCce----EEecccchHHHHHHHHHHHHh
Confidence 556679999999999988776544456663 379999999999999997643
No 140
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=70.23 E-value=6.4 Score=40.19 Aligned_cols=40 Identities=33% Similarity=0.370 Sum_probs=32.6
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKF 307 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~ 307 (782)
+-++|||=||-|--+.=| ...|++|. |+|+++.|.+....
T Consensus 31 ~g~~LDlgcG~GRNalyL----A~~G~~Vt---AvD~s~~al~~l~~ 70 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYL----ASQGFDVT---AVDISPVALEKLQR 70 (192)
T ss_dssp SSEEEEES-TTSHHHHHH----HHTT-EEE---EEESSHHHHHHHHH
T ss_pred CCcEEEcCCCCcHHHHHH----HHCCCeEE---EEECCHHHHHHHHH
Confidence 459999999999998877 78999975 99999999877654
No 141
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=69.64 E-value=11 Score=38.29 Aligned_cols=58 Identities=12% Similarity=0.111 Sum_probs=41.0
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHh-----CCCCcccccchHHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFN-----HPETKVRNEAADDF 322 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N-----~p~~~~~~~d~~~~ 322 (782)
...++|||-||.|.++..|.. +..+..+ .|||+++.++...+.| ..+..++..|+.++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~--~~p~~~v---~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~ 78 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAK--QNPDKNF---LGIEIHTPIVLAANNKANKLGLKNLHVLCGDANEL 78 (194)
T ss_pred CCceEEEeCCCccHHHHHHHH--hCCCCCE---EEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHH
Confidence 345899999999999988742 2234444 4999999877665443 34566778888765
No 142
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=69.33 E-value=5.4 Score=42.58 Aligned_cols=55 Identities=27% Similarity=0.387 Sum_probs=43.7
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC---CCCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH---PETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~---p~~~~~~~d~~~ 321 (782)
....+||+.+|.|.++.-| ...|-++ .|||+|+..++.++..+ ++..++++|+-.
T Consensus 30 ~~~~VlEiGpG~G~lT~~L----~~~~~~v---~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~ 87 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTREL----LKRGKRV---IAVEIDPDLAKHLKERFASNPNVEVINGDFLK 87 (262)
T ss_dssp TTSEEEEESSTTSCCHHHH----HHHSSEE---EEEESSHHHHHHHHHHCTTCSSEEEEES-TTT
T ss_pred CCCEEEEeCCCCccchhhH----hcccCcc---eeecCcHhHHHHHHHHhhhcccceeeecchhc
Confidence 5578999999999999998 3455444 49999999999999965 567788888644
No 143
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=67.75 E-value=12 Score=40.97 Aligned_cols=61 Identities=23% Similarity=0.228 Sum_probs=45.1
Q ss_pred CCcceeccccccchhHHHHHHhhhhcC--CceeeEEEEecCHHHHHHHHHhCC---CCcccccchHHHHHHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSG--VKLVTRWAIDINPHACKSLKFNHP---ETKVRNEAADDFLSLL 326 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG--~~~~~~~ave~~~~a~~t~~~N~p---~~~~~~~d~~~~~~~~ 326 (782)
+.-.+||.-||.||.|..|. +..+ .+| .|+|.|+.|++..+.+.- ...++..+..++...+
T Consensus 19 pg~~vlD~TlG~GGhS~~il---~~~~~~g~V---igiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAIL---ERLGPKGRL---IAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVL 84 (296)
T ss_pred CCCEEEEeCcCChHHHHHHH---HhCCCCCEE---EEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHH
Confidence 34589999999999999984 3332 443 599999999998887652 4567777777765443
No 144
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=67.72 E-value=8.7 Score=38.97 Aligned_cols=41 Identities=37% Similarity=0.303 Sum_probs=33.5
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHh
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFN 308 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N 308 (782)
..++||+=||.|.++.-| ...|.+| .|+|+++.+++..+.+
T Consensus 31 ~~~vLDiGcG~G~~a~~l----a~~g~~V---~~iD~s~~~l~~a~~~ 71 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYL----SLAGYDV---RAWDHNPASIASVLDM 71 (195)
T ss_pred CCcEEEeCCCCCHHHHHH----HHCCCeE---EEEECCHHHHHHHHHH
Confidence 458999999999988777 4568775 4999999999887654
No 145
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=67.21 E-value=7 Score=41.22 Aligned_cols=58 Identities=19% Similarity=0.168 Sum_probs=39.6
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC------CCcccccchHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP------ETKVRNEAADD 321 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p------~~~~~~~d~~~ 321 (782)
..++|||-||.|.++..|...+...|.++ .++|+++.+++..+.|.. ...++..|+.+
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v---~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~ 120 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKI---IAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRD 120 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeE---EEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhh
Confidence 35899999999998877632212245665 499999999988877753 23445555543
No 146
>PRK11524 putative methyltransferase; Provisional
Probab=66.74 E-value=7.3 Score=42.08 Aligned_cols=43 Identities=33% Similarity=0.331 Sum_probs=34.2
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
+.=.|||-|+|.|- |++ .|++.|=+.+ ++|+++..++.-+...
T Consensus 208 ~GD~VLDPF~GSGT--T~~--AA~~lgR~~I---G~Ei~~~Y~~~a~~Rl 250 (284)
T PRK11524 208 PGDIVLDPFAGSFT--TGA--VAKASGRKFI---GIEINSEYIKMGLRRL 250 (284)
T ss_pred CCCEEEECCCCCcH--HHH--HHHHcCCCEE---EEeCCHHHHHHHHHHH
Confidence 33469999999994 554 4588998875 9999999998887754
No 147
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=66.49 E-value=7.6 Score=39.45 Aligned_cols=39 Identities=28% Similarity=0.514 Sum_probs=28.3
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLK 306 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~ 306 (782)
.-.|||.|||.|- |++ .|...|-+.+ ++|+++..++..+
T Consensus 192 gdiVlDpF~GSGT--T~~--aa~~l~R~~i---g~E~~~~y~~~a~ 230 (231)
T PF01555_consen 192 GDIVLDPFAGSGT--TAV--AAEELGRRYI---GIEIDEEYCEIAK 230 (231)
T ss_dssp T-EEEETT-TTTH--HHH--HHHHTT-EEE---EEESSHHHHHHHH
T ss_pred ceeeehhhhccCh--HHH--HHHHcCCeEE---EEeCCHHHHHHhc
Confidence 4479999999995 443 4578898865 9999999988654
No 148
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=66.10 E-value=8.6 Score=39.71 Aligned_cols=55 Identities=15% Similarity=0.133 Sum_probs=37.6
Q ss_pred CcceeccccccchhHHHHHHhhhhc--CCceeeEEEEecCHHHHHHHHHhCC-----CCcccccchHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLS--GVKLVTRWAIDINPHACKSLKFNHP-----ETKVRNEAADD 321 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~a--G~~~~~~~ave~~~~a~~t~~~N~p-----~~~~~~~d~~~ 321 (782)
..++||+.||.|.++.-+. +.. +.++ .++|+++..++..+.|.. +..++..|+.+
T Consensus 46 ~~~vLDiGcG~G~~~~~la---~~~~~~~~v---~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 107 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALA---EAVGPEGHV---IGLDFSENMLSVGRQKVKDAGLHNVELVHGNAME 107 (231)
T ss_pred CCEEEEeCCCcCHHHHHHH---HHhCCCCEE---EEEECCHHHHHHHHHHHHhcCCCceEEEEechhc
Confidence 4589999999999887663 222 2343 599999999887776643 34445555443
No 149
>PRK00811 spermidine synthase; Provisional
Probab=65.64 E-value=12 Score=40.43 Aligned_cols=58 Identities=12% Similarity=0.141 Sum_probs=42.4
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC----------CCCcccccchHHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH----------PETKVRNEAADDFL 323 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~----------p~~~~~~~d~~~~~ 323 (782)
.-++|+|.||.|++..-+. +..++.-+ -+||+|+..++..+.++ |...++.+|+..++
T Consensus 77 p~~VL~iG~G~G~~~~~~l---~~~~~~~V--~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l 144 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVL---KHPSVEKI--TLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFV 144 (283)
T ss_pred CCEEEEEecCchHHHHHHH---cCCCCCEE--EEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHH
Confidence 3489999999999877652 44455422 49999999988888765 34567788887764
No 150
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=65.35 E-value=7.9 Score=45.62 Aligned_cols=49 Identities=20% Similarity=0.188 Sum_probs=36.8
Q ss_pred CCcceeccccccchhHHHHHHhhhh----cCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASL----SGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~----aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
...+++|.+||+|++..++-.-+.. .+++. .++++|+|+.|+...+.|.
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~-~i~g~DId~~a~~~a~~~l 83 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVEL-NIYFADIDKTLLKRAKKLL 83 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCccccee-eeeeechhHHHHHHHHHHH
Confidence 4579999999999999888543221 12333 3589999999999888875
No 151
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=65.33 E-value=5.7 Score=40.92 Aligned_cols=53 Identities=25% Similarity=0.118 Sum_probs=36.7
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchHHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDF 322 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~~ 322 (782)
+.-++|||-||.|+++.-+. +..|-.. .+.|||+++. .+.|+..++++|+.+.
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~---~~~~~~~-~V~aVDi~~~------~~~~~v~~i~~D~~~~ 103 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAV---TQIGDKG-RVIACDILPM------DPIVGVDFLQGDFRDE 103 (209)
T ss_pred CCCEEEEEcccCCHHHHHHH---HHcCCCc-eEEEEecccc------cCCCCcEEEecCCCCh
Confidence 34589999999999987663 3333211 2359999982 3457777888887764
No 152
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=65.29 E-value=15 Score=38.62 Aligned_cols=70 Identities=19% Similarity=0.159 Sum_probs=42.9
Q ss_pred CccEEEecCCchhhcccCcCCCCCccccccccchHHHHHHHHHHhCCcEEEeccc--cccccccccchHHHHHHHHhcCC
Q 003974 445 DVDFICGGPPCQGVSGFNRFRNPQAALEDIKNRQLLVFMDVIEYLKPKYVLMENV--VDILKFSGGFLARYAVGRLVSMD 522 (782)
Q Consensus 445 ~vDvl~ggpPCQ~fS~ag~~~~~~~~~~d~r~~L~~~~~~ii~~~~P~~~v~ENV--~gl~~~~~~~~~~~i~~~l~~~G 522 (782)
.+|+|+--|| -||.||.- . .-.++.++.|+ ++|--=+|.=| ||-. ...-...+.+.+.|++.|
T Consensus 205 sfDaIiHDPP--RfS~AgeL-------Y--seefY~El~Ri---LkrgGrlFHYvG~Pg~r-yrG~d~~~gVa~RLr~vG 269 (287)
T COG2521 205 SFDAIIHDPP--RFSLAGEL-------Y--SEEFYRELYRI---LKRGGRLFHYVGNPGKR-YRGLDLPKGVAERLRRVG 269 (287)
T ss_pred ccceEeeCCC--ccchhhhH-------h--HHHHHHHHHHH---cCcCCcEEEEeCCCCcc-cccCChhHHHHHHHHhcC
Confidence 5999999999 78988741 1 12345555555 55543333333 2311 122346777999999999
Q ss_pred cceEEEE
Q 003974 523 YQTRLGI 529 (782)
Q Consensus 523 Y~v~~~i 529 (782)
+++--.+
T Consensus 270 F~~v~~~ 276 (287)
T COG2521 270 FEVVKKV 276 (287)
T ss_pred ceeeeee
Confidence 9865444
No 153
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=65.07 E-value=8.8 Score=41.00 Aligned_cols=54 Identities=24% Similarity=0.280 Sum_probs=44.4
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC---CCCcccccchHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH---PETKVRNEAADD 321 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~---p~~~~~~~d~~~ 321 (782)
.-++|++=+|.|+++.-| ...|-.|+ |||+|+.-+..++... ++..++++|+-.
T Consensus 31 ~d~VlEIGpG~GaLT~~L----l~~~~~v~---aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk 87 (259)
T COG0030 31 GDNVLEIGPGLGALTEPL----LERAARVT---AIEIDRRLAEVLKERFAPYDNLTVINGDALK 87 (259)
T ss_pred CCeEEEECCCCCHHHHHH----HhhcCeEE---EEEeCHHHHHHHHHhcccccceEEEeCchhc
Confidence 458999999999999988 45565554 9999999999999885 467789988744
No 154
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=64.74 E-value=10 Score=38.85 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=32.8
Q ss_pred CCcceeccccccchhHHHHHHhhhhcC--CceeeEEEEecCHHHHHHHHHhCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSG--VKLVTRWAIDINPHACKSLKFNHP 310 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG--~~~~~~~ave~~~~a~~t~~~N~p 310 (782)
+..++||+.||.|.++.-|. +..+ -++ .++|+++.+++..+.|..
T Consensus 72 ~~~~VLDiG~GsG~~~~~la---~~~~~~g~V---~~iD~~~~~~~~a~~~l~ 118 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCA---EAIERRGKV---YTVEIVKELAIYAAQNIE 118 (205)
T ss_pred CCCEEEEECcCccHHHHHHH---HhcCCCCEE---EEEeCCHHHHHHHHHHHH
Confidence 34689999999999887664 2322 233 599999998877776653
No 155
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=64.67 E-value=9.1 Score=36.53 Aligned_cols=39 Identities=26% Similarity=0.545 Sum_probs=33.4
Q ss_pred CCCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHH
Q 003974 259 QPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKS 304 (782)
Q Consensus 259 ~~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t 304 (782)
....++||+-||.|.++..| +..|++++ ++|+++.+++.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l----~~~~~~~~---g~D~~~~~~~~ 59 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRAL----AKRGFEVT---GVDISPQMIEK 59 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHH----HHTTSEEE---EEESSHHHHHH
T ss_pred CCCCEEEEEcCCCCHHHHHH----HHhCCEEE---EEECCHHHHhh
Confidence 45579999999999998888 67898754 99999999888
No 156
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=63.55 E-value=11 Score=38.21 Aligned_cols=44 Identities=23% Similarity=0.160 Sum_probs=33.2
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
..++||+-||+|.++.-+.. +..+.++ .++|.++.+++..+.|.
T Consensus 46 g~~VLDiGcGtG~~al~la~--~~~~~~V---~giD~s~~~l~~A~~~~ 89 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAI--ARPELKV---TLVDSLGKKIAFLREVA 89 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHH--HCCCCeE---EEEeCcHHHHHHHHHHH
Confidence 56899999999998887632 2345554 49999999888777654
No 157
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=62.89 E-value=11 Score=40.47 Aligned_cols=59 Identities=19% Similarity=0.192 Sum_probs=43.0
Q ss_pred CCcceeccccccchhHHHHHHhhhhc-CCceeeEEEEecCHHHHHHHHHhCCCCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLS-GVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~a-G~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~ 321 (782)
...++||+-||.|.++..|....... |.. +.++|+++.+++..+.+.|+..+...|+.+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~---v~giD~s~~~l~~A~~~~~~~~~~~~d~~~ 144 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQ---LFGLDISKVAIKYAAKRYPQVTFCVASSHR 144 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCe---EEEECCCHHHHHHHHHhCCCCeEEEeeccc
Confidence 34579999999999988874221111 223 359999999999999888887776666544
No 158
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=61.34 E-value=1.3 Score=49.73 Aligned_cols=91 Identities=14% Similarity=0.114 Sum_probs=74.9
Q ss_pred EEEECCEEEeeCCEEEEeeCC-CCccEEEEEeEEeecCCCceEEEEEEEEeccccccccccccCCCCeEEEeCCcCCccc
Q 003974 108 QASVDGCLYNLGDDAYVKAEE-GAVDYIARIVELFESVDGEPYFKARWFYRAEDTVIKDLACLVDRKRVFLSDVEDDNPL 186 (782)
Q Consensus 108 ~~~v~G~~y~vGD~V~v~~~~-~~~~~Ia~I~~m~e~~~g~~~v~v~WfyRp~dtv~~~~~~~~~~rELFlS~~~d~~~~ 186 (782)
.+.+.+....+|+.+++.+.. ...+.++++...|.+.++..+.-++||||+.++.... ....-.+++.+....+.+.+
T Consensus 269 ~~~i~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 347 (371)
T COG5076 269 SVLITNSQAHVGAWPFLRPVSDEEVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRD-AKLFFDNCVMYNGEVTDYYK 347 (371)
T ss_pred hhcccccccccccccccccCCcccccchhhhhhcccccccchhhhhcccCCCccccccc-cchhhhcccccchhhhhhhh
Confidence 456777789999999999985 7888999999999998888888999999999775433 34455678888888899999
Q ss_pred cccceeeEEEeeC
Q 003974 187 NCIVSKAKIAEVA 199 (782)
Q Consensus 187 ~~I~gkc~V~~~~ 199 (782)
....+.|.|....
T Consensus 348 ~~~~~~~~~~~~~ 360 (371)
T COG5076 348 NANVLEDFVIKKT 360 (371)
T ss_pred hccchhhhHhhhh
Confidence 9999999886553
No 159
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=60.66 E-value=19 Score=36.55 Aligned_cols=59 Identities=24% Similarity=0.273 Sum_probs=44.1
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC-----CCCcccccchHHHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADDFL 323 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~-----p~~~~~~~d~~~~~ 323 (782)
+.-.++|+=||+|.++.=+ ..+|=... ++|+|-|+.|.++.+.|. ++..++.+++-+.|
T Consensus 34 ~g~~l~DIGaGtGsi~iE~----a~~~p~~~-v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L 97 (187)
T COG2242 34 PGDRLWDIGAGTGSITIEW----ALAGPSGR-VIAIERDEEALELIERNAARFGVDNLEVVEGDAPEAL 97 (187)
T ss_pred CCCEEEEeCCCccHHHHHH----HHhCCCce-EEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhh
Confidence 3458999999999877644 24454332 379999999999999994 66778888877654
No 160
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=60.40 E-value=15 Score=39.30 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=36.0
Q ss_pred CCCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCC
Q 003974 259 QPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPE 311 (782)
Q Consensus 259 ~~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~ 311 (782)
.+..++||+-||.|+.+.-|. ...|.++ .++|+++.+++..+.+.+.
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la---~~~~~~v---~giD~s~~~~~~a~~~~~~ 97 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYIN---EKYGAHV---HGVDICEKMVNIAKLRNSD 97 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHH---hhcCCEE---EEEECCHHHHHHHHHHcCc
Confidence 355689999999999887663 3346665 4999999998888877653
No 161
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=60.39 E-value=6.6 Score=41.27 Aligned_cols=40 Identities=23% Similarity=0.369 Sum_probs=27.3
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLK 306 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~ 306 (782)
..-+++|+|||.|+++..+ ...+..+ +++|+++..+..++
T Consensus 20 ~~~~~vepF~G~g~V~~~~----~~~~~~v---i~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNL----KQPGKRV---IINDINPDLINFWK 59 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC-------SSEE---EEEES-HHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHh----cccccce---eeeechHHHHHHHH
Confidence 4568999999999887655 2344443 58999999988887
No 162
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=60.01 E-value=14 Score=38.27 Aligned_cols=43 Identities=19% Similarity=0.272 Sum_probs=33.4
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
...++||+.||.|.++.-+ ...|.++ .++|+++.+++..+.|.
T Consensus 48 ~~~~vLdiG~G~G~~~~~l----~~~~~~v---~~iD~s~~~~~~a~~~~ 90 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESM----ARLGADV---TGIDASEENIEVARLHA 90 (233)
T ss_pred CCCeEEEeCCCCCHHHHHH----HHcCCeE---EEEcCCHHHHHHHHHHH
Confidence 4568999999999887766 3456654 58999999988777654
No 163
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=59.47 E-value=18 Score=38.00 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=32.9
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPE 311 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~ 311 (782)
...++||+-||.|+++.-| ...|..-+ .|||+++.-...-..++|.
T Consensus 75 ~~~~vlDiG~gtG~~t~~l----~~~ga~~v--~avD~~~~~l~~~l~~~~~ 120 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCA----LQKGAKEV--YGVDVGYNQLAEKLRQDER 120 (228)
T ss_pred CCCEEEEcccCCCHHHHHH----HHcCCCEE--EEEeCCHHHHHHHHhcCCC
Confidence 3458999999999999877 45676644 6999999655543333343
No 164
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=59.27 E-value=16 Score=37.00 Aligned_cols=57 Identities=16% Similarity=0.167 Sum_probs=38.9
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC---CCcccccchH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP---ETKVRNEAAD 320 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p---~~~~~~~d~~ 320 (782)
+..++||+.||.|..+.-+. ..+.......++|+++.++...+.+.+ ...++..|+.
T Consensus 39 ~~~~vldiG~G~G~~~~~~~----~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~ 98 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELA----KSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAE 98 (223)
T ss_pred CCCeEEEeCCCCChhHHHHH----HhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchh
Confidence 45799999999999888773 233210123599999999988888764 2344444443
No 165
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=58.68 E-value=14 Score=29.61 Aligned_cols=39 Identities=15% Similarity=0.356 Sum_probs=26.4
Q ss_pred EeeCCEEEEeeCCCCccEEEEEeEEeecCCCceEEEEEEEEe
Q 003974 116 YNLGDDAYVKAEEGAVDYIARIVELFESVDGEPYFKARWFYR 157 (782)
Q Consensus 116 y~vGD~V~v~~~~~~~~~Ia~I~~m~e~~~g~~~v~v~WfyR 157 (782)
|++||-|.++++ +-..-|..|..- ......++.++||--
T Consensus 1 f~~GDvV~LKSG-Gp~MTV~~v~~~--~~~~~~~v~C~WFd~ 39 (53)
T PF09926_consen 1 FKIGDVVQLKSG-GPRMTVTEVGPN--AGASGGWVECQWFDG 39 (53)
T ss_pred CCCCCEEEEccC-CCCeEEEEcccc--ccCCCCeEEEEeCCC
Confidence 578999999998 334455555332 123347999999974
No 166
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=58.02 E-value=15 Score=39.81 Aligned_cols=44 Identities=25% Similarity=0.344 Sum_probs=35.5
Q ss_pred CCCCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHH
Q 003974 258 GQPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKF 307 (782)
Q Consensus 258 ~~~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~ 307 (782)
-++.+++||+=||.|||+.=+ |+.-|++|+ +|++++...+-.+.
T Consensus 70 L~~G~~lLDiGCGWG~l~~~a---A~~y~v~V~---GvTlS~~Q~~~~~~ 113 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYA---AEEYGVTVV---GVTLSEEQLAYAEK 113 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHH---HHHcCCEEE---EeeCCHHHHHHHHH
Confidence 456789999999999988744 466688875 99999988777665
No 167
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=57.53 E-value=10 Score=43.86 Aligned_cols=62 Identities=21% Similarity=0.286 Sum_probs=40.6
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHH----HhC--CCCcccccchHHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLK----FNH--PETKVRNEAADDF 322 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~----~N~--p~~~~~~~d~~~~ 322 (782)
+...|+|+=||-|-++.-.-.+++.+|..+ .++|||.|+.|+.+++ .|. ....|+++|++++
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~-~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v 253 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAV-KVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREV 253 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCES-EEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTS
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCe-EEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCC
Confidence 457899999999999865422333334333 3589999999998873 232 3456888888776
No 168
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=57.31 E-value=14 Score=39.35 Aligned_cols=44 Identities=18% Similarity=0.183 Sum_probs=31.3
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHh
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFN 308 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N 308 (782)
..++||+.||.|.++.-+. +..|-.. .+.|+|+++..++..+.+
T Consensus 74 ~~~VLDlGcGtG~~~~~la---~~~~~~~-~V~gvD~S~~ml~~A~~r 117 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLS---EKVGSDG-KVMGLDFSSEQLAVAASR 117 (261)
T ss_pred CCEEEEECCcCCHHHHHHH---HHhCCCC-EEEEEECCHHHHHHHHHH
Confidence 4589999999999876552 3334221 225999999998877654
No 169
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=56.57 E-value=18 Score=40.44 Aligned_cols=59 Identities=29% Similarity=0.307 Sum_probs=43.5
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC----C-CCcccccchHHHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH----P-ETKVRNEAADDFLS 324 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~----p-~~~~~~~d~~~~~~ 324 (782)
..+++|-|||.|-=..=+ |..+|.. .++++|+++.|+++.+.|. + ++.++|+|++.++.
T Consensus 53 ~~~v~DalsatGiRgIRy---a~E~~~~--~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~ 116 (380)
T COG1867 53 PKRVLDALSATGIRGIRY---AVETGVV--KVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLH 116 (380)
T ss_pred CeEEeecccccchhHhhh---hhhcCcc--EEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHH
Confidence 679999999999633322 2345553 2379999999999999884 2 56788889988753
No 170
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=55.59 E-value=22 Score=36.35 Aligned_cols=57 Identities=19% Similarity=0.142 Sum_probs=39.2
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC-CCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP-ETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p-~~~~~~~d~~~ 321 (782)
...++|||-||.|.++.-| ...|... .+.++|+++..++..+.+.+ +..++..|+.+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l----~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~ 91 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRAL----LKRFPQA-EFIALDISAGMLAQAKTKLSENVQFICGDAEK 91 (240)
T ss_pred CCCeEEEECCCccHHHHHH----HHhCCCC-cEEEEeChHHHHHHHHHhcCCCCeEEecchhh
Confidence 3468999999999988777 3344332 23699999999887777664 33444555544
No 171
>PRK04457 spermidine synthase; Provisional
Probab=55.31 E-value=21 Score=38.13 Aligned_cols=57 Identities=16% Similarity=0.290 Sum_probs=41.7
Q ss_pred cceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC------CCCcccccchHHHH
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH------PETKVRNEAADDFL 323 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~------p~~~~~~~d~~~~~ 323 (782)
-++|+|=+|.|.++.-+.. ...+.++ .+||+|+..++..+.++ +...++.+|+.+++
T Consensus 68 ~~vL~IG~G~G~l~~~l~~--~~p~~~v---~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l 130 (262)
T PRK04457 68 QHILQIGLGGGSLAKFIYT--YLPDTRQ---TAVEINPQVIAVARNHFELPENGERFEVIEADGAEYI 130 (262)
T ss_pred CEEEEECCCHhHHHHHHHH--hCCCCeE---EEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHH
Confidence 4799999998887776632 2234444 59999999999988875 33467788888774
No 172
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=55.20 E-value=6.7 Score=45.36 Aligned_cols=41 Identities=34% Similarity=0.552 Sum_probs=33.4
Q ss_pred cceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
-.++|+|||.|-.++.+ ..|+.-+ .+||+++.|+.--+.|-
T Consensus 385 k~llDv~CGTG~iglal-----a~~~~~V--iGvEi~~~aV~dA~~nA 425 (534)
T KOG2187|consen 385 KTLLDVCCGTGTIGLAL-----ARGVKRV--IGVEISPDAVEDAEKNA 425 (534)
T ss_pred cEEEEEeecCCceehhh-----hccccce--eeeecChhhcchhhhcc
Confidence 47999999999988877 3566654 69999999988887764
No 173
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=54.82 E-value=18 Score=30.77 Aligned_cols=51 Identities=24% Similarity=0.358 Sum_probs=35.6
Q ss_pred eccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCc--ccccchHH
Q 003974 265 LDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETK--VRNEAADD 321 (782)
Q Consensus 265 ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~--~~~~d~~~ 321 (782)
||+=||.|-.+..|. +..+.++ +++|+++.+.+..+.+..... ++..|+.+
T Consensus 1 LdiG~G~G~~~~~l~---~~~~~~v---~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~ 53 (95)
T PF08241_consen 1 LDIGCGTGRFAAALA---KRGGASV---TGIDISEEMLEQARKRLKNEGVSFRQGDAED 53 (95)
T ss_dssp EEET-TTSHHHHHHH---HTTTCEE---EEEES-HHHHHHHHHHTTTSTEEEEESBTTS
T ss_pred CEecCcCCHHHHHHH---hccCCEE---EEEeCCHHHHHHHHhcccccCchheeehHHh
Confidence 688889888887773 2336664 599999999999999887644 55656554
No 174
>PLN02672 methionine S-methyltransferase
Probab=54.77 E-value=15 Score=46.89 Aligned_cols=43 Identities=28% Similarity=0.366 Sum_probs=33.4
Q ss_pred cceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
.++|||.||.|.++..+.. +....++ .|+|+++.|++..+.|-
T Consensus 120 ~~VLDlG~GSG~Iai~La~--~~~~~~v---~avDis~~Al~~A~~Na 162 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAE--KWLPSKV---YGLDINPRAVKVAWINL 162 (1082)
T ss_pred CEEEEEecchHHHHHHHHH--HCCCCEE---EEEECCHHHHHHHHHHH
Confidence 4799999999999988732 1122343 59999999999999884
No 175
>PRK06922 hypothetical protein; Provisional
Probab=54.31 E-value=17 Score=43.73 Aligned_cols=56 Identities=20% Similarity=0.244 Sum_probs=39.0
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCC----CcccccchHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPE----TKVRNEAADD 321 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~----~~~~~~d~~~ 321 (782)
..++||+.||.|.++.-|.. ...+.++ .|+|+++.+++..+.+.+. ..++.+|+.+
T Consensus 419 g~rVLDIGCGTG~ls~~LA~--~~P~~kV---tGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~d 478 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEE--ETEDKRI---YGIDISENVIDTLKKKKQNEGRSWNVIKGDAIN 478 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHH--hCCCCEE---EEEECCHHHHHHHHHHhhhcCCCeEEEEcchHh
Confidence 46899999999998877632 2345555 4999999999888876432 2334455543
No 176
>PRK08317 hypothetical protein; Provisional
Probab=53.96 E-value=19 Score=36.73 Aligned_cols=55 Identities=22% Similarity=0.187 Sum_probs=36.9
Q ss_pred CCcceeccccccchhHHHHHHhhhhc--CCceeeEEEEecCHHHHHHHHHh----CCCCcccccchH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLS--GVKLVTRWAIDINPHACKSLKFN----HPETKVRNEAAD 320 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~a--G~~~~~~~ave~~~~a~~t~~~N----~p~~~~~~~d~~ 320 (782)
...++||+.||.|.++..+. ... +.++ .++|+++...+..+.+ .++..+...|+.
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a---~~~~~~~~v---~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~ 79 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELA---RRVGPEGRV---VGIDRSEAMLALAKERAAGLGPNVEFVRGDAD 79 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHH---HhcCCCcEE---EEEeCCHHHHHHHHHHhhCCCCceEEEecccc
Confidence 34689999999999888773 222 2343 5999999987777666 233444444443
No 177
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=53.70 E-value=20 Score=37.86 Aligned_cols=56 Identities=20% Similarity=0.284 Sum_probs=39.7
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchHHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDF 322 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~~ 322 (782)
...++|||-||.|.++.-|.. ...|.++ .++|+++..++..+.+ +..++..|++++
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~--~~p~~~v---~gvD~s~~~~~~a~~~--~~~~~~~d~~~~ 84 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLAR--RWPGAVI---EALDSSPEMVAAARER--GVDARTGDVRDW 84 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHH--HCCCCEE---EEEECCHHHHHHHHhc--CCcEEEcChhhC
Confidence 446899999999998877631 2235554 4999999998877664 355666676553
No 178
>PTZ00146 fibrillarin; Provisional
Probab=53.31 E-value=23 Score=38.52 Aligned_cols=56 Identities=20% Similarity=0.247 Sum_probs=35.1
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHh---CCCCcccccch
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFN---HPETKVRNEAA 319 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N---~p~~~~~~~d~ 319 (782)
+..+||||.||.|.++.-+. ...|-.= .++|||+++.+.+-+... .++...+.+|+
T Consensus 132 pG~~VLDLGaG~G~~t~~lA---diVG~~G-~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da 190 (293)
T PTZ00146 132 PGSKVLYLGAASGTTVSHVS---DLVGPEG-VVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDA 190 (293)
T ss_pred CCCEEEEeCCcCCHHHHHHH---HHhCCCC-EEEEEECcHHHHHHHHHHhhhcCCCEEEECCc
Confidence 44699999999999998875 3433211 347999998654222221 24545555554
No 179
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=53.12 E-value=23 Score=36.73 Aligned_cols=49 Identities=27% Similarity=0.307 Sum_probs=35.0
Q ss_pred CCCCCcceeccccccchhH--HHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC
Q 003974 257 IGQPEMSLLDLYSGCGAMS--TGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP 310 (782)
Q Consensus 257 ~~~~~~~~ldlf~G~Gg~s--~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p 310 (782)
.++.++++-|-|||.|.|- +||+.+. .+.-+.|.|+|+.|.+.-..|..
T Consensus 48 ~~~~p~tLyDPCCG~gyLLTVlGLLh~~-----~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 48 EGKGPYTLYDPCCGSGYLLTVLGLLHRR-----RLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp SS-S-EEEEETT-TTSHHHHHHHHHTGG-----GEEEEEEEES-HHHHHHHHHHHH
T ss_pred cCCCCeeeeccCCCccHHHHHHHHhhhH-----HHHhHhcccCCHHHHHHHHHhhh
Confidence 3568899999999999975 4664332 34456899999999999999963
No 180
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=53.07 E-value=19 Score=36.94 Aligned_cols=45 Identities=20% Similarity=0.236 Sum_probs=33.9
Q ss_pred CCcceeccccccchhHHHHHHhhhhcC--CceeeEEEEecCHHHHHHHHHhCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSG--VKLVTRWAIDINPHACKSLKFNHP 310 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG--~~~~~~~ave~~~~a~~t~~~N~p 310 (782)
+..++||+.||.|.++.-+. ...+ .+ +.++|+++.+.+..+.|..
T Consensus 51 ~~~~vldiG~G~G~~~~~l~---~~~~~~~~---v~~~D~s~~~~~~a~~~~~ 97 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALA---KAVGKTGE---VVGLDFSEGMLAVGREKLR 97 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHH---HHcCCCCe---EEEEeCCHHHHHHHHHhhc
Confidence 34799999999999888773 2222 33 3599999999888888753
No 181
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=53.02 E-value=10 Score=37.98 Aligned_cols=50 Identities=20% Similarity=0.131 Sum_probs=32.2
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAAD 320 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~ 320 (782)
.-++||+-||.|+++.-+. ...+-. ..++|+|+++.. ..++..+...|+.
T Consensus 33 g~~VLDiG~GtG~~~~~l~---~~~~~~-~~v~~vDis~~~------~~~~i~~~~~d~~ 82 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAV---EQVGGK-GRVIAVDLQPMK------PIENVDFIRGDFT 82 (188)
T ss_pred CCEEEEecCCCCHHHHHHH---HHhCCC-ceEEEEeccccc------cCCCceEEEeeCC
Confidence 4589999999999988774 222111 123699999854 3455555555553
No 182
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=51.23 E-value=26 Score=35.24 Aligned_cols=53 Identities=21% Similarity=0.217 Sum_probs=35.8
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADD 321 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~ 321 (782)
..++||+.||.|.++.-|. ...+..+ +++|+++.++...+.+ +..++..|+.+
T Consensus 14 ~~~iLDiGcG~G~~~~~l~---~~~~~~~---~giD~s~~~i~~a~~~--~~~~~~~d~~~ 66 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLR---DEKQVRG---YGIEIDQDGVLACVAR--GVNVIQGDLDE 66 (194)
T ss_pred CCEEEEeCCCCCHHHHHHH---hccCCcE---EEEeCCHHHHHHHHHc--CCeEEEEEhhh
Confidence 3489999999999876662 2334443 6999999988776553 23445555543
No 183
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=51.13 E-value=15 Score=39.28 Aligned_cols=40 Identities=25% Similarity=0.362 Sum_probs=35.7
Q ss_pred cceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHh
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFN 308 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N 308 (782)
+++||+=||.|=+|.-| .+.|..|+ |||..+.++++++..
T Consensus 91 ~~ilDvGCGgGLLSepL----Arlga~V~---GID~s~~~V~vA~~h 130 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPL----ARLGAQVT---GIDASDDMVEVANEH 130 (282)
T ss_pred ceEEEeccCccccchhh----HhhCCeeE---eecccHHHHHHHHHh
Confidence 67999999999999988 78998875 999999999999875
No 184
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=51.02 E-value=18 Score=37.96 Aligned_cols=57 Identities=23% Similarity=0.355 Sum_probs=35.4
Q ss_pred CCcceeccccccchhHHHHHHhhhhcC--CceeeEEEEecCHHHHHHHHHhC-----CCCcccccchHHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSG--VKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADDF 322 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG--~~~~~~~ave~~~~a~~t~~~N~-----p~~~~~~~d~~~~ 322 (782)
+..++|||.||.|-++.-+. +..| .++ .++|+++.=++.-+... .+...+.+|++++
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~---~~~~~~~~v---~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~l 110 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELA---RRVGPNGKV---VGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDL 110 (233)
T ss_dssp S--EEEEET-TTSHHHHHHG---GGSS---EE---EEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB-
T ss_pred CCCEEEEeCCChHHHHHHHH---HHCCCccEE---EEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHh
Confidence 44699999999999988773 4444 344 49999998777766543 2455666676654
No 185
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=50.36 E-value=24 Score=36.06 Aligned_cols=43 Identities=23% Similarity=0.302 Sum_probs=33.2
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
...++|||.||.|.++.-+ ...|.++ .++|.++.++...+.|.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l----~~~~~~v---~~iD~s~~~~~~a~~~~ 87 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPL----ARLGANV---TGIDASEENIEVAKLHA 87 (224)
T ss_pred CCCeEEEECCCCCHHHHHH----HhcCCeE---EEEeCCHHHHHHHHHHH
Confidence 3579999999999888766 3456663 48999999887777654
No 186
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=50.08 E-value=23 Score=36.19 Aligned_cols=46 Identities=15% Similarity=0.212 Sum_probs=33.9
Q ss_pred CCCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCC
Q 003974 259 QPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPE 311 (782)
Q Consensus 259 ~~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~ 311 (782)
++..++||+.||.|.++.-|. +..+ ++ .++|+++.+++..+.|...
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la---~~~~-~v---~~vd~~~~~~~~a~~~~~~ 122 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLA---HLVR-RV---FSVERIKTLQWEAKRRLKQ 122 (212)
T ss_pred CCCCEEEEECCCccHHHHHHH---HHhC-EE---EEEeCCHHHHHHHHHHHHH
Confidence 345799999999999887553 3333 33 5999999998887776543
No 187
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=49.97 E-value=18 Score=39.29 Aligned_cols=48 Identities=23% Similarity=0.243 Sum_probs=30.9
Q ss_pred CCcceeccccccchhHHHHHHhhh---hcCCceeeEEEEecCHHHHHHHHHh
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGAS---LSGVKLVTRWAIDINPHACKSLKFN 308 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~---~aG~~~~~~~ave~~~~a~~t~~~N 308 (782)
..-+++|.+||.|++-..+..-+. ..... ..++++|+++.++..-+.|
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~-~~i~G~ei~~~~~~la~~n 96 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKE-INIYGIEIDPEAVALAKLN 96 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCC-EEEEEEES-HHHHHHHHHH
T ss_pred ccceeechhhhHHHHHHHHHHhhccccccccc-ceeEeecCcHHHHHHHHhh
Confidence 345799999999998777632110 01122 2458999999999887766
No 188
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=49.05 E-value=51 Score=36.03 Aligned_cols=94 Identities=17% Similarity=0.249 Sum_probs=60.8
Q ss_pred CcccccccchhhhhhHHhHhcccccc-CC--CCCCCccEEEecCCchhhcccCcCCC--CC------------ccccccc
Q 003974 413 TWEPIKGLSKCKEKLKEFVTKGYRSN-IL--PLPGDVDFICGGPPCQGVSGFNRFRN--PQ------------AALEDIK 475 (782)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--p~~~~vDvl~ggpPCQ~fS~ag~~~~--~~------------~~~~d~r 475 (782)
-|.++.+|...++.+++.|.-..+-. +. -..+=--+|..|||-.|-|-..+.-. .+ ..+-.+.
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGES 210 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGES 210 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccH
Confidence 48999999999999999875421100 00 00123368999999988773321100 00 0112344
Q ss_pred cchHHHHHHHHHHhCCcEEEecccccccccc
Q 003974 476 NRQLLVFMDVIEYLKPKYVLMENVVDILKFS 506 (782)
Q Consensus 476 ~~L~~~~~~ii~~~~P~~~v~ENV~gl~~~~ 506 (782)
..|+.+++.+.++.+|.++++..|-.+-...
T Consensus 211 EkLVknLFemARe~kPSIIFiDEiDslcg~r 241 (439)
T KOG0739|consen 211 EKLVKNLFEMARENKPSIIFIDEIDSLCGSR 241 (439)
T ss_pred HHHHHHHHHHHHhcCCcEEEeehhhhhccCC
Confidence 5788889999999999999999988665443
No 189
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=48.87 E-value=14 Score=41.00 Aligned_cols=43 Identities=23% Similarity=0.400 Sum_probs=34.3
Q ss_pred cceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCC
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPE 311 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~ 311 (782)
-.+||=|||.||+-.-. ..-|.+++ ++|++...+.=-+.|.-.
T Consensus 199 ~~vlDPFcGTGgiLiEa----gl~G~~vi---G~Did~~mv~gak~Nl~~ 241 (347)
T COG1041 199 ELVLDPFCGTGGILIEA----GLMGARVI---GSDIDERMVRGAKINLEY 241 (347)
T ss_pred CEeecCcCCccHHHHhh----hhcCceEe---ecchHHHHHhhhhhhhhh
Confidence 38999999999876533 56888865 899999999888888643
No 190
>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2, HPR3, HPR4, respectively) and lens epithelium-derived growth factor, LEDGF. Members of the HDGF family have been linked to human diseases, and HDGF is a prognostic factor in several types of cancer. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=47.53 E-value=27 Score=30.63 Aligned_cols=42 Identities=19% Similarity=0.238 Sum_probs=34.0
Q ss_pred EEeeCCEEEEeeCCCCccEEEEEeEEeecCCCceEEEEEEEEe
Q 003974 115 LYNLGDDAYVKAEEGAVDYIARIVELFESVDGEPYFKARWFYR 157 (782)
Q Consensus 115 ~y~vGD~V~v~~~~~~~~~Ia~I~~m~e~~~g~~~v~v~WfyR 157 (782)
.|++||-|..+-. +-|+|-|+|...-+.......+.|+||.-
T Consensus 2 ~f~~GdlVwaK~k-Gyp~WPa~I~~~~~~~~~~~~~~V~FfGt 43 (83)
T cd05834 2 QFKAGDLVFAKVK-GYPAWPARVDEPEDWKPPGKKYPVYFFGT 43 (83)
T ss_pred CCCCCCEEEEecC-CCCCCCEEEecccccCCCCCEEEEEEeCC
Confidence 4789999999986 78899999999865434457899999984
No 191
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=47.41 E-value=30 Score=35.61 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=33.3
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
+..++||+.||.|.++.-|. +..|-.. .+.++|+++..++..+.|.
T Consensus 76 ~g~~VLdIG~GsG~~t~~la---~~~~~~~-~V~~vE~~~~~~~~a~~~l 121 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVA---EIVGKSG-KVVTIERIPELAEKAKKTL 121 (212)
T ss_pred CcCEEEEECCcccHHHHHHH---HhcCCCC-EEEEEeCCHHHHHHHHHHH
Confidence 44689999999999987663 3333211 2259999999988887764
No 192
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=46.59 E-value=31 Score=32.52 Aligned_cols=42 Identities=21% Similarity=0.181 Sum_probs=33.2
Q ss_pred ceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 263 SLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 263 ~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
+++|+-||.|-.+..| ...|-.. .++++|.++.+.+.++.|.
T Consensus 1 ~vlDiGa~~G~~~~~~----~~~~~~~-~v~~~E~~~~~~~~l~~~~ 42 (143)
T TIGR01444 1 VVIDVGANIGDTSLYF----ARKGAEG-RVIAFEPLPDAYEILEENV 42 (143)
T ss_pred CEEEccCCccHHHHHH----HHhCCCC-EEEEEecCHHHHHHHHHHH
Confidence 5899999999998887 3444432 3479999999999998885
No 193
>PRK13699 putative methylase; Provisional
Probab=46.49 E-value=27 Score=36.51 Aligned_cols=40 Identities=23% Similarity=0.366 Sum_probs=30.7
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKF 307 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~ 307 (782)
.=.|||-|||.|. +++ +|...|-+++ ++|+++..++....
T Consensus 164 g~~vlDpf~Gsgt--t~~--aa~~~~r~~~---g~e~~~~y~~~~~~ 203 (227)
T PRK13699 164 NAIVLDPFAGSGS--TCV--AALQSGRRYI---GIELLEQYHRAGQQ 203 (227)
T ss_pred CCEEEeCCCCCCH--HHH--HHHHcCCCEE---EEecCHHHHHHHHH
Confidence 3479999999995 443 4578898875 99999988776544
No 194
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=46.14 E-value=37 Score=37.80 Aligned_cols=58 Identities=22% Similarity=0.402 Sum_probs=39.9
Q ss_pred CCCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC--CCcccccchHH
Q 003974 259 QPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP--ETKVRNEAADD 321 (782)
Q Consensus 259 ~~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p--~~~~~~~d~~~ 321 (782)
....++|||-||.|.++..+.. ...+.++ .++|.++...+..+.+.+ +..++.+|+++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~--~~~~~~V---tgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~ 171 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVK--HVDAKNV---TILDQSPHQLAKAKQKEPLKECKIIEGDAED 171 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHH--HCCCCEE---EEEECCHHHHHHHHHhhhccCCeEEeccHHh
Confidence 3567999999999998877732 1123343 599999998888777643 44455566544
No 195
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=46.14 E-value=32 Score=38.92 Aligned_cols=46 Identities=24% Similarity=0.337 Sum_probs=35.9
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPE 311 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~ 311 (782)
+..++||+-||.|++..-+. +..|.+++ ++|+++...+..+.+..+
T Consensus 167 ~g~rVLDIGcG~G~~a~~la---~~~g~~V~---giDlS~~~l~~A~~~~~~ 212 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAA---EHYGVSVV---GVTISAEQQKLAQERCAG 212 (383)
T ss_pred CCCEEEEeCCCccHHHHHHH---HHCCCEEE---EEeCCHHHHHHHHHHhcc
Confidence 44689999999999887652 44577654 999999999988887643
No 196
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=45.99 E-value=35 Score=35.54 Aligned_cols=59 Identities=15% Similarity=0.165 Sum_probs=38.8
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC------CCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP------ETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p------~~~~~~~d~~~ 321 (782)
...++|||=||.|.++..|..-....+.++ .++|+++.+++..+.+.. ...++.+|+.+
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v---~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~ 117 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKI---IGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH 117 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeE---EEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhh
Confidence 445899999999998877731111135554 499999999888776632 23445555544
No 197
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=45.88 E-value=22 Score=39.43 Aligned_cols=44 Identities=23% Similarity=0.298 Sum_probs=29.0
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
...+||||+||=||=-.=. ..+++... +++|++..+++--+.-+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw----~~~~i~~~--vg~Dis~~si~ea~~Ry 105 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKW----QKAKIKHY--VGIDISEESIEEARERY 105 (331)
T ss_dssp TT-EEEEET-TTTTTHHHH----HHTT-SEE--EEEES-HHHHHHHHHHH
T ss_pred CCCeEEEecCCCchhHHHH----HhcCCCEE--EEEeCCHHHHHHHHHHH
Confidence 6789999999988844334 46777644 79999999876655433
No 198
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=45.58 E-value=27 Score=38.02 Aligned_cols=59 Identities=22% Similarity=0.165 Sum_probs=39.3
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHH----HHhCCCCcc--cccchHHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSL----KFNHPETKV--RNEAADDFL 323 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~----~~N~p~~~~--~~~d~~~~~ 323 (782)
..++|||=||.|-.+.-|...+. .|.++ .++|+++...+.. ...+|+..+ +.+|..+.+
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~-~~~~~---~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~ 128 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALR-QPARY---VPIDISADALKESAAALAADYPQLEVHGICADFTQPL 128 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhc-cCCeE---EEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchh
Confidence 35899999999999988842111 15654 5999999875444 444676543 567766543
No 199
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=45.15 E-value=11 Score=38.43 Aligned_cols=46 Identities=26% Similarity=0.376 Sum_probs=37.7
Q ss_pred CCCCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 258 GQPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 258 ~~~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
.....+||||.||.|=-+..- ..+|..-+ ++.|+++.+.+....|-
T Consensus 77 tVrgkrVLd~gagsgLvaIAa----a~aGA~~v--~a~d~~P~~~~ai~lNa 122 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAA----ARAGAAEV--VAADIDPWLEQAIRLNA 122 (218)
T ss_pred ccccceeeecccccChHHHHH----HHhhhHHH--HhcCCChHHHHHhhcch
Confidence 344569999999999777644 78998765 79999999999999875
No 200
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=42.68 E-value=29 Score=38.30 Aligned_cols=55 Identities=20% Similarity=0.161 Sum_probs=35.7
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHH------hCCCCcccccchHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKF------NHPETKVRNEAADD 321 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~------N~p~~~~~~~d~~~ 321 (782)
.-+|||+-||.|..+..+ ...|...+ .++|.++....-++. +.++..+...|+++
T Consensus 123 g~~VLDIGCG~G~~~~~l----a~~g~~~V--~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~ 183 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRM----LGAGAKLV--VGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQ 183 (322)
T ss_pred CCEEEEeccCCcHHHHHH----HHcCCCEE--EEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHH
Confidence 358999999999988877 45576533 599999865432221 12344555555554
No 201
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=42.53 E-value=26 Score=34.80 Aligned_cols=50 Identities=20% Similarity=0.128 Sum_probs=32.0
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccch
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAA 319 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~ 319 (782)
...++|||.|+.||++.-+ ...+...-.++|||..+. ...+....+.+|+
T Consensus 23 ~~~~vlDlG~aPGGws~~~----~~~~~~~~~v~avDl~~~------~~~~~~~~i~~d~ 72 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVL----LQRGGPAGRVVAVDLGPM------DPLQNVSFIQGDI 72 (181)
T ss_dssp TTEEEEEET-TTSHHHHHH----HTSTTTEEEEEEEESSST------GS-TTEEBTTGGG
T ss_pred cccEEEEcCCcccceeeee----eecccccceEEEEecccc------ccccceeeeeccc
Confidence 4589999999999999877 344411123479999987 2334555555554
No 202
>PRK05785 hypothetical protein; Provisional
Probab=42.01 E-value=31 Score=35.98 Aligned_cols=42 Identities=19% Similarity=0.150 Sum_probs=31.5
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHh
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFN 308 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N 308 (782)
.-++|||-||.|-++.-|. +..|.++ .++|+++..++.-+..
T Consensus 52 ~~~VLDlGcGtG~~~~~l~---~~~~~~v---~gvD~S~~Ml~~a~~~ 93 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFK---KVFKYYV---VALDYAENMLKMNLVA 93 (226)
T ss_pred CCeEEEEcCCCCHHHHHHH---HhcCCEE---EEECCCHHHHHHHHhc
Confidence 4589999999998887763 2225554 4999999998876553
No 203
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=41.46 E-value=56 Score=34.98 Aligned_cols=57 Identities=18% Similarity=0.188 Sum_probs=38.3
Q ss_pred cceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC---------CCcccccchHHHH
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP---------ETKVRNEAADDFL 323 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p---------~~~~~~~d~~~~~ 323 (782)
-++|+|.+|.|++..-+. +..+.. .+.+||+|+..++..+.++| ...++.+|...++
T Consensus 74 ~~VL~iG~G~G~~~~~ll---~~~~~~--~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l 139 (270)
T TIGR00417 74 KHVLVIGGGDGGVLREVL---KHKSVE--KATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFL 139 (270)
T ss_pred CEEEEEcCCchHHHHHHH---hCCCcc--eEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHH
Confidence 399999999999776552 222233 23589999999888877654 3345556666553
No 204
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase V. It is highly expressed in several types of human cancers. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=40.49 E-value=44 Score=29.23 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=31.7
Q ss_pred EeeCCEEEEeeCCCCccEEEEEeEEeecCCCceEEEEEEEEec
Q 003974 116 YNLGDDAYVKAEEGAVDYIARIVELFESVDGEPYFKARWFYRA 158 (782)
Q Consensus 116 y~vGD~V~v~~~~~~~~~Ia~I~~m~e~~~g~~~v~v~WfyRp 158 (782)
|.+||.|.-+-. +-|++.|+|.++- ++..+++|.||--.
T Consensus 1 f~~gdlVWaK~~-g~P~WPa~I~~~~---~~~~k~~V~FfG~~ 39 (80)
T cd06080 1 FEKNDLVWAKIQ-GYPWWPAVIKSIS---RKKQKARVNFIGDN 39 (80)
T ss_pred CCCCCEEEEeCC-CCCCCCEEEeeec---CCCCEEEEEEeCCC
Confidence 468999998877 6788999999983 44678999998765
No 205
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=40.02 E-value=40 Score=39.11 Aligned_cols=45 Identities=18% Similarity=0.122 Sum_probs=34.6
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP 310 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p 310 (782)
...++||+-||.|+.+.-|. ...|.++ .|+|+++.+....+.|..
T Consensus 266 ~~~~vLDiGcG~G~~~~~la---~~~~~~v---~gvDiS~~~l~~A~~~~~ 310 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMA---ENFDVHV---VGIDLSVNMISFALERAI 310 (475)
T ss_pred CCCEEEEEeccCCHHHHHHH---HhcCCEE---EEEECCHHHHHHHHHHhh
Confidence 44689999999999887663 3346654 499999999888777653
No 206
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=39.65 E-value=38 Score=37.34 Aligned_cols=55 Identities=16% Similarity=0.096 Sum_probs=35.6
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHH------HhCCCCcccccchHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLK------FNHPETKVRNEAADD 321 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~------~N~p~~~~~~~d~~~ 321 (782)
.-++||+=||.|.+...+ ...|...+ .+||.++..+..++ .+.+...+...++++
T Consensus 122 g~~VLDvGCG~G~~~~~~----~~~g~~~v--~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~ 182 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRM----LGHGAKSL--VGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQ 182 (314)
T ss_pred CCEEEEeccCCcHHHHHH----HHcCCCEE--EEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHH
Confidence 358999999999988777 45676533 59999996544322 233344455555544
No 207
>PLN02476 O-methyltransferase
Probab=39.36 E-value=49 Score=35.84 Aligned_cols=59 Identities=17% Similarity=0.100 Sum_probs=43.4
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC------CCcccccchHHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP------ETKVRNEAADDFL 323 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p------~~~~~~~d~~~~~ 323 (782)
.-++|++.+|+|..++-|..++...| ++ .++|.++.+.+.-+.|+- ...++.+|+.++|
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G-~V---~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L 183 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESG-CL---VACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESL 183 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCC-EE---EEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH
Confidence 34899999999999887754433333 33 589999999888888863 3456677877765
No 208
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=38.40 E-value=53 Score=37.26 Aligned_cols=57 Identities=14% Similarity=0.053 Sum_probs=40.2
Q ss_pred cceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHh-----CCCCcccccchHHHH
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFN-----HPETKVRNEAADDFL 323 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N-----~p~~~~~~~d~~~~~ 323 (782)
..+||+-||.|.+...+.. ..-+..+ .|+|+++.++.....+ ..+..++..|+..++
T Consensus 124 p~vLEIGcGsG~~ll~lA~--~~P~~~~---iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll 185 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAK--NNPNKLF---IGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLL 185 (390)
T ss_pred CeEEEEcCcccHHHHHHHH--hCCCCCE---EEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhh
Confidence 4899999999999887732 2234444 4999998775554433 456677888887764
No 209
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=38.12 E-value=49 Score=36.58 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=32.1
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
+..++||+.||.|.++.-+. +..|-.- .+.+||+++..++..+.|.
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA---~~~~~~g-~VvgVDis~~~l~~Ar~~l 125 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMS---RVVGEKG-LVVSVEYSRKICEIAKRNV 125 (322)
T ss_pred CCCEEEEEeCCccHHHHHHH---HhcCCCC-EEEEEECCHHHHHHHHHHH
Confidence 44689999999999887764 3344211 1259999998877666553
No 210
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=37.27 E-value=74 Score=28.74 Aligned_cols=51 Identities=22% Similarity=0.312 Sum_probs=40.0
Q ss_pred cccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchHHH
Q 003974 267 LYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDF 322 (782)
Q Consensus 267 lf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~~ 322 (782)
+.||+|-++..+...+...|.+++ .+|.|+..++.++... ..++.+|..+.
T Consensus 2 vI~G~g~~~~~i~~~L~~~~~~vv---vid~d~~~~~~~~~~~--~~~i~gd~~~~ 52 (116)
T PF02254_consen 2 VIIGYGRIGREIAEQLKEGGIDVV---VIDRDPERVEELREEG--VEVIYGDATDP 52 (116)
T ss_dssp EEES-SHHHHHHHHHHHHTTSEEE---EEESSHHHHHHHHHTT--SEEEES-TTSH
T ss_pred EEEcCCHHHHHHHHHHHhCCCEEE---EEECCcHHHHHHHhcc--cccccccchhh
Confidence 568999999888888888776765 7999999999998765 56778888775
No 211
>KOG2133 consensus Transcriptional corepressor Atrophin-1/DRPLA [General function prediction only]
Probab=37.01 E-value=30 Score=42.70 Aligned_cols=122 Identities=17% Similarity=0.139 Sum_probs=83.5
Q ss_pred EECCEEEeeCCEEEEeeCCCCccEEEEEeEEeecCC-CceEEEEEEEEeccccc-cc---c-------------ccccCC
Q 003974 110 SVDGCLYNLGDDAYVKAEEGAVDYIARIVELFESVD-GEPYFKARWFYRAEDTV-IK---D-------------LACLVD 171 (782)
Q Consensus 110 ~v~G~~y~vGD~V~v~~~~~~~~~Ia~I~~m~e~~~-g~~~v~v~WfyRp~dtv-~~---~-------------~~~~~~ 171 (782)
..++..|.++|.|.++.....++.|+.|-.+-..++ ....+..-.+.|.+|+. .+ . ......
T Consensus 140 s~~e~~y~~~~~l~~~v~~~~p~lia~~~~~~~~Kr~~~~~~k~s~~~r~~d~Pet~y~~~m~pe~Ar~e~~P~~~pq~~ 219 (1229)
T KOG2133|consen 140 SHDETLYDLRDSLFVEVSQPEPYLIAAICGFKYTKRDDRQVVKLSFYFRADDIPETGYLNLMKPERARLEINPHLCPQPL 219 (1229)
T ss_pred cccchhhhhhhhhhhhhccCCccccccccCccccccccccccccccccccccCcccccccccCchhhhhccCCccCCCcc
Confidence 456789999999999998777888888866655564 34566778888988886 22 0 112345
Q ss_pred CCeEEEeCCc-CCccccccceeeEEEeeCCcchh--hhhhcCCCCCceeeeccccCCCceeee
Q 003974 172 RKRVFLSDVE-DDNPLNCIVSKAKIAEVATNMDL--EAKQKNIPPCDLYYDMKYTLPHLTFLN 231 (782)
Q Consensus 172 ~rELFlS~~~-d~~~~~~I~gkc~V~~~~~~~~~--~~~~~~~~~~~ffy~~~Y~~~~~~F~~ 231 (782)
.++||.+... -+-|.+|..|||.+.+....-.. .......+...||....|.+.+..-.+
T Consensus 220 sq~l~~s~l~~i~qppscp~gk~~~~~skd~~h~~~~n~p~~ld~~i~fk~agglpps~k~a~ 282 (1229)
T KOG2133|consen 220 SQELFNSELQGITQPPSCPRGKGIAEYSKDVRHGGNTNAPFSLDNDIFFKCAGGLPPSTKPAS 282 (1229)
T ss_pred hhhhhcccccCCCCCCcCCCCCceEEeecccccCCccCCCCcccceeeeecccCCCCCCCCCC
Confidence 7899999887 78899999999999955431111 111122334456666888888765444
No 212
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=36.49 E-value=61 Score=33.03 Aligned_cols=57 Identities=18% Similarity=0.265 Sum_probs=42.2
Q ss_pred ceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHH-----HHHHHhCCCCcccccchHHHHH
Q 003974 263 SLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHAC-----KSLKFNHPETKVRNEAADDFLS 324 (782)
Q Consensus 263 ~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~-----~t~~~N~p~~~~~~~d~~~~~~ 324 (782)
.+||+-||-|.+...+.. ...+..++ |||+....+ ...+.+.++..++..|+..++.
T Consensus 20 l~lEIG~G~G~~l~~~A~--~~Pd~n~i---GiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~ 81 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAK--RNPDINFI---GIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLR 81 (195)
T ss_dssp EEEEET-TTSHHHHHHHH--HSTTSEEE---EEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHH
T ss_pred eEEEecCCCCHHHHHHHH--HCCCCCEE---EEecchHHHHHHHHHHHhhcccceEEEEccHHHHHh
Confidence 899999999999988743 56677665 999998654 4455678899999999988753
No 213
>cd05835 Dnmt3b_related The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis. In tumorigenesis, DNA methylation by Dnmt3b is known to play a role in the inactivation of tumor suppressor genes. In addition, a point mutation in the PWWP domain of Dnmt3b has been identified in patients with ICF syndrome (immunodeficiency, centromeric instability, and facial anomalies), a rare autosomal recessive disorder characterized by hypomethylation of classical satellite DNA. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=35.96 E-value=40 Score=29.74 Aligned_cols=40 Identities=23% Similarity=0.304 Sum_probs=31.1
Q ss_pred EeeCCEEEEeeCCCCccEEEEEeEEeecCC---CceEEEEEEEE
Q 003974 116 YNLGDDAYVKAEEGAVDYIARIVELFESVD---GEPYFKARWFY 156 (782)
Q Consensus 116 y~vGD~V~v~~~~~~~~~Ia~I~~m~e~~~---g~~~v~v~Wfy 156 (782)
|++||-|..+-. +-+.|-|+|........ ...+++|+||-
T Consensus 1 f~vGDlVWaK~k-g~pwWP~~V~~~~~~~~~~~~~~~~~V~fFG 43 (87)
T cd05835 1 FNVGDLVWGKIK-GFPWWPGRVVSITVTSKRPPVVGMRWVTWFG 43 (87)
T ss_pred CCCCCEEEEecC-CCCCCCeEEechhhcccccCCCCeEEEEEeC
Confidence 578999999987 77889999999865431 23578888887
No 214
>PF10383 Clr2: Transcription-silencing protein Clr2 ; InterPro: IPR018839 Clr2 (cryptic loci regulator) is a chromatin silencing protein, one of a quartet of proteins forming the core of SHREC, a multienzyme effector complex that mediates hetero-chromatic transcriptional gene silencing in fission yeast []. Clr2 does not have any obvious well-conserved domains but, along with the other core proteins, binds to the histone deacetylase Clr3, and on its own might also have a role in chromatin organisation at the cnt domain, the site of kinetochore assembly.
Probab=35.60 E-value=1.3e+02 Score=28.98 Aligned_cols=53 Identities=15% Similarity=0.122 Sum_probs=37.5
Q ss_pred eeeEEEECCEEEeeCCEEEEeeC-----------CCCccEEEEEeEEeecCCC-------ceEEEEEEEEe
Q 003974 105 HYTQASVDGCLYNLGDDAYVKAE-----------EGAVDYIARIVELFESVDG-------EPYFKARWFYR 157 (782)
Q Consensus 105 ~Y~~~~v~G~~y~vGD~V~v~~~-----------~~~~~~Ia~I~~m~e~~~g-------~~~v~v~WfyR 157 (782)
||..+-++-+.|.|||.|=|++. ..+...|-.|.+|...... ..+|++.-|.-
T Consensus 2 ~y~GiflGAE~I~vGD~VRl~~~~~~~~~~~~~~~~~~tdvMvI~~I~~~~~~~~~~~~~~v~~~G~lY~~ 72 (139)
T PF10383_consen 2 YYRGIFLGAEMIWVGDAVRLKPLNASPSPNQSDGNPDVTDVMVIDEIQLRLINCDPDSPSTVRFRGDLYTL 72 (139)
T ss_pred eECeEEEeeEEEEeCCEEEECccCCCcccccccCCCCceeEEEEeEEEEecccCCCCCCceEEEEeEecee
Confidence 89999999999999999999542 1334466677777654322 46777776654
No 215
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=35.29 E-value=61 Score=37.05 Aligned_cols=54 Identities=20% Similarity=0.206 Sum_probs=44.6
Q ss_pred ccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchHHH
Q 003974 266 DLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDF 322 (782)
Q Consensus 266 dlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~~ 322 (782)
=+.+|+|-+...+..-+...|.+++ .+|.++..++.++..+++..++.+|+.+.
T Consensus 234 iiIiG~G~~g~~l~~~L~~~~~~v~---vid~~~~~~~~~~~~~~~~~~i~gd~~~~ 287 (453)
T PRK09496 234 VMIVGGGNIGYYLAKLLEKEGYSVK---LIERDPERAEELAEELPNTLVLHGDGTDQ 287 (453)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEE---EEECCHHHHHHHHHHCCCCeEEECCCCCH
Confidence 3678999988888777777898875 89999999999998888888888887664
No 216
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=34.33 E-value=14 Score=48.14 Aligned_cols=12 Identities=50% Similarity=0.692 Sum_probs=9.9
Q ss_pred hhhchhhhHHhh
Q 003974 22 ARRRKLNLAEQQ 33 (782)
Q Consensus 22 ~~~r~~~~a~~~ 33 (782)
+|||..+|||++
T Consensus 133 ~~~~~r~l~eed 144 (2849)
T PTZ00415 133 KRRRARHLAEED 144 (2849)
T ss_pred ehHHhhccchhh
Confidence 678888999986
No 217
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=33.44 E-value=95 Score=31.77 Aligned_cols=56 Identities=23% Similarity=0.288 Sum_probs=41.6
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchHHHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDFL 323 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~~~ 323 (782)
+.-+||||=||-|.+=.=|. +.-++. ..+||+|+..+..-..+- ..|+.+|+++-|
T Consensus 13 pgsrVLDLGCGdG~LL~~L~---~~k~v~---g~GvEid~~~v~~cv~rG--v~Viq~Dld~gL 68 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLK---DEKQVD---GYGVEIDPDNVAACVARG--VSVIQGDLDEGL 68 (193)
T ss_pred CCCEEEecCCCchHHHHHHH---HhcCCe---EEEEecCHHHHHHHHHcC--CCEEECCHHHhH
Confidence 34699999999998765553 334554 369999999877776654 568999998864
No 218
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=33.34 E-value=69 Score=33.99 Aligned_cols=58 Identities=22% Similarity=0.213 Sum_probs=36.5
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC-----CCCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~-----p~~~~~~~d~~~ 321 (782)
+.-++||+-||.|..+.-+ ++..|... .+.++|+++..++..+.|. ++..++.+|+++
T Consensus 77 ~g~~VLDiG~G~G~~~~~~---a~~~g~~~-~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~ 139 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLA---ARRVGPTG-KVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEA 139 (272)
T ss_pred CCCEEEEeCCCCCHHHHHH---HHHhCCCC-EEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhh
Confidence 4459999999997655433 23445432 1259999999988887763 334444455433
No 219
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=33.34 E-value=1.3e+02 Score=33.22 Aligned_cols=82 Identities=13% Similarity=0.173 Sum_probs=53.4
Q ss_pred CCCCCcccccccchhhhhhHHhHhccccccCCCCCCCccEEEecCCchhhcccCcCCCCCccccccccchHHHHHHHHHH
Q 003974 409 PSEDTWEPIKGLSKCKEKLKEFVTKGYRSNILPLPGDVDFICGGPPCQGVSGFNRFRNPQAALEDIKNRQLLVFMDVIEY 488 (782)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~vDvl~ggpPCQ~fS~ag~~~~~~~~~~d~r~~L~~~~~~ii~~ 488 (782)
+..-.|.+..+-++.+....--+ ..+.|||+--|| || ||.+|+.+|-+
T Consensus 110 ~~~~~~~~l~GdGDFrS~E~i~L-----------l~eADIVVTNPP---FS------------------LFrEyv~~Li~ 157 (336)
T PF13651_consen 110 IDDIEVTPLKGDGDFRSDECIEL-----------LKEADIVVTNPP---FS------------------LFREYVAQLIE 157 (336)
T ss_pred ccccceeeccCCCCcCcHHHHHH-----------HhcCCEEEeCCC---cH------------------HHHHHHHHHHH
Confidence 34446888887777644322111 137899999998 66 57789999999
Q ss_pred hCCcEEEeccccccccccccchHHHHHHHHhcCCcce
Q 003974 489 LKPKYVLMENVVDILKFSGGFLARYAVGRLVSMDYQT 525 (782)
Q Consensus 489 ~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v 525 (782)
..=+|+|+=|.-.+.-. .++..+.+.=.=+||..
T Consensus 158 ~~KkFlIIGN~NaiTYk---eiFplik~nk~WlG~~~ 191 (336)
T PF13651_consen 158 YDKKFLIIGNINAITYK---EIFPLIKENKIWLGYTF 191 (336)
T ss_pred hCCCEEEEeccccccHH---HHHHHHhcCcEEecccc
Confidence 99999999998654321 13333333223357766
No 220
>COG5475 Uncharacterized small protein [Function unknown]
Probab=31.94 E-value=1.3e+02 Score=24.51 Aligned_cols=38 Identities=21% Similarity=0.356 Sum_probs=24.8
Q ss_pred EEEeeCCEEEEeeCCCCccEEEEEeEEeecCCCceEEEEEEEEecc
Q 003974 114 CLYNLGDDAYVKAEEGAVDYIARIVELFESVDGEPYFKARWFYRAE 159 (782)
Q Consensus 114 ~~y~vGD~V~v~~~~~~~~~Ia~I~~m~e~~~g~~~v~v~WfyRp~ 159 (782)
..+++||-|.|+.+. | .-|+.=+. ++ -|+.++||-+..
T Consensus 3 ~~FstgdvV~lKsGG--P---~Mtvs~~s-s~--Gmy~C~Wf~g~g 40 (60)
T COG5475 3 MSFSTGDVVTLKSGG--P---RMTVSGYS-SD--GMYECRWFDGYG 40 (60)
T ss_pred ceeecCcEEEeecCC--c---eEEEeccc-cC--CeEEEEEecCCC
Confidence 478999999999872 2 11222111 12 599999998844
No 221
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=31.70 E-value=5.1e+02 Score=27.62 Aligned_cols=54 Identities=19% Similarity=0.223 Sum_probs=43.3
Q ss_pred CCccEEEecCCchhhcccCcCCCCCccccccccchHHHHHHHHHHhCCcEEEeccccccccccc
Q 003974 444 GDVDFICGGPPCQGVSGFNRFRNPQAALEDIKNRQLLVFMDVIEYLKPKYVLMENVVDILKFSG 507 (782)
Q Consensus 444 ~~vDvl~ggpPCQ~fS~ag~~~~~~~~~~d~r~~L~~~~~~ii~~~~P~~~v~ENV~gl~~~~~ 507 (782)
+++|+|+.|-|=.+- .+-.-+-|.|+..+++-+...+-.++++--=.|+-.+.+
T Consensus 97 ~~~~LLvmGkie~~G----------eGC~Cp~~allR~~l~~l~~~~~e~VivDtEAGiEHfgR 150 (255)
T COG3640 97 GDIDLLVMGKIEEGG----------EGCACPMNALLRRLLRHLILNRYEVVIVDTEAGIEHFGR 150 (255)
T ss_pred CCccEEEeccccCCC----------CcccchHHHHHHHHHHHHhcccCcEEEEecccchhhhcc
Confidence 579999998874332 245678899999999999988899999998888877654
No 222
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=31.41 E-value=79 Score=30.18 Aligned_cols=46 Identities=24% Similarity=0.270 Sum_probs=33.0
Q ss_pred CCCcceeccccccchhHHHHHHhhh--hcCCceeeEEEEecCHHHHHHHHH
Q 003974 259 QPEMSLLDLYSGCGAMSTGLCIGAS--LSGVKLVTRWAIDINPHACKSLKF 307 (782)
Q Consensus 259 ~~~~~~ldlf~G~Gg~s~Gl~~g~~--~aG~~~~~~~ave~~~~a~~t~~~ 307 (782)
.....++|+.||-|=+|.-|..-+. ..+.++ .+||.++...+....
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v---~~iD~~~~~~~~a~~ 71 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRV---LGIDCNESLVESAQK 71 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeE---EEEECCcHHHHHHHH
Confidence 4567999999999999988842111 245665 499999987665554
No 223
>cd05162 PWWP The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. The function of the PWWP domain is still not known precisely; however, based on the fact that other regions of PWWP-domain proteins are responsible for nuclear localization and DNA-binding, is likely that the PWWP domain acts as a site for protein-protein binding interactions, influencing chromatin remodeling and thereby regulating transcriptional processes. Some PWWP-domain proteins have been linked to cancer or other diseases; some are known to function as growth factors.
Probab=29.30 E-value=68 Score=27.94 Aligned_cols=40 Identities=20% Similarity=0.188 Sum_probs=30.9
Q ss_pred EeeCCEEEEeeCCCCccEEEEEeEEeecC------CCceEEEEEEEE
Q 003974 116 YNLGDDAYVKAEEGAVDYIARIVELFESV------DGEPYFKARWFY 156 (782)
Q Consensus 116 y~vGD~V~v~~~~~~~~~Ia~I~~m~e~~------~g~~~v~v~Wfy 156 (782)
|++||.|..+.. +-+.|-|+|...-+.. ....++.|++|-
T Consensus 1 f~~GdlVwaK~~-g~pwWPa~V~~~~~~~~~~~~~~~~~~~~V~Ffg 46 (87)
T cd05162 1 FRPGDLVWAKMK-GYPWWPALVVDPPKDSKKAKKKAKEGKVLVLFFG 46 (87)
T ss_pred CCCCCEEEEeCC-CCCCCCEEEccccccchhhhccCCCCEEEEEEeC
Confidence 578999999998 6788999999886542 223578888886
No 224
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=28.65 E-value=71 Score=32.66 Aligned_cols=43 Identities=19% Similarity=0.225 Sum_probs=32.2
Q ss_pred ceeccccccchhHHHHHHhhhhc-CCceeeEEEEecCHHHHHHHHHhCCC
Q 003974 263 SLLDLYSGCGAMSTGLCIGASLS-GVKLVTRWAIDINPHACKSLKFNHPE 311 (782)
Q Consensus 263 ~~ldlf~G~Gg~s~Gl~~g~~~a-G~~~~~~~ave~~~~a~~t~~~N~p~ 311 (782)
++||+-||.|+++.-+. +.. +.++ .++|+++..++..+.++..
T Consensus 2 ~vLDiGcG~G~~~~~la---~~~~~~~v---~gid~s~~~~~~a~~~~~~ 45 (224)
T smart00828 2 RVLDFGCGYGSDLIDLA---ERHPHLQL---HGYTISPEQAEVGRERIRA 45 (224)
T ss_pred eEEEECCCCCHHHHHHH---HHCCCCEE---EEEECCHHHHHHHHHHHHh
Confidence 68999999999887663 222 4554 4999999998888777643
No 225
>PLN02366 spermidine synthase
Probab=28.23 E-value=1.2e+02 Score=33.28 Aligned_cols=58 Identities=17% Similarity=0.142 Sum_probs=40.9
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC---------CCcccccchHHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP---------ETKVRNEAADDFL 323 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p---------~~~~~~~d~~~~~ 323 (782)
.-+||++=+|.|++..-+. +..++.- +..||+|+..++..+..+| ...++.+|+..++
T Consensus 92 pkrVLiIGgG~G~~~rell---k~~~v~~--V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l 158 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIA---RHSSVEQ--IDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFL 158 (308)
T ss_pred CCeEEEEcCCccHHHHHHH---hCCCCCe--EEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHH
Confidence 3589999999998876662 4444432 2489999988777777654 4667778877764
No 226
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=27.70 E-value=1.2e+02 Score=33.90 Aligned_cols=74 Identities=24% Similarity=0.320 Sum_probs=42.4
Q ss_pred CCccEEEecCCchhhcc-cCcC----------CCCCccccccccchHHHH--------HHHHHHhCCcEEEecccccccc
Q 003974 444 GDVDFICGGPPCQGVSG-FNRF----------RNPQAALEDIKNRQLLVF--------MDVIEYLKPKYVLMENVVDILK 504 (782)
Q Consensus 444 ~~vDvl~ggpPCQ~fS~-ag~~----------~~~~~~~~d~r~~L~~~~--------~~ii~~~~P~~~v~ENV~gl~~ 504 (782)
-+|-+|.||||-++|-. +|-. .++.....|-.+. +.++ +.-++.+||++|++||+|-=+.
T Consensus 42 ~~Il~IsG~~~~~~F~~~~gVd~V~LPsl~k~~~G~~~~~d~~~~-l~e~~~~Rs~lil~t~~~fkPDi~IVd~~P~Glr 120 (400)
T COG4671 42 FDILIISGGPPAGGFPGPAGVDFVKLPSLIKGDNGEYGLVDLDGD-LEETKKLRSQLILSTAETFKPDIFIVDKFPFGLR 120 (400)
T ss_pred ceEEEEeCCCccCCCCCcccCceEecCceEecCCCceeeeecCCC-HHHHHHHHHHHHHHHHHhcCCCEEEEeccccchh
Confidence 36778999999999976 3321 1111122222222 2222 2346678999999999984333
Q ss_pred ccccchHHHHHHHHhcCC
Q 003974 505 FSGGFLARYAVGRLVSMD 522 (782)
Q Consensus 505 ~~~~~~~~~i~~~l~~~G 522 (782)
+. +.-.++.|+..|
T Consensus 121 ~E----L~ptL~yl~~~~ 134 (400)
T COG4671 121 FE----LLPTLEYLKTTG 134 (400)
T ss_pred hh----hhHHHHHHhhcC
Confidence 22 233566666666
No 227
>PRK13251 transcription attenuation protein MtrB; Provisional
Probab=27.55 E-value=2e+02 Score=24.49 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=38.3
Q ss_pred EEEEEEEeccccccccccccCCCCeEEEeCCcCCccccccceeeEEEeeC
Q 003974 150 FKARWFYRAEDTVIKDLACLVDRKRVFLSDVEDDNPLNCIVSKAKIAEVA 199 (782)
Q Consensus 150 v~v~WfyRp~dtv~~~~~~~~~~rELFlS~~~d~~~~~~I~gkc~V~~~~ 199 (782)
|+|.=+-|+.||... +....|..||.+.+-.+..++-.|+||+.|....
T Consensus 19 V~vIgltrg~dtkfh-htEkLDkGEVmiaqftehtsaiKirGkA~I~t~~ 67 (75)
T PRK13251 19 VNVIGLTRGKDTKFH-HTEKLDKGEVMIAQFTEHTSAIKIRGKAEIQTKH 67 (75)
T ss_pred eEEEEEecCCCccch-hhhhcCCCcEEEEEeecceeEEEEeceEEEEeec
Confidence 555666788888422 2346789999999999999999999999997654
No 228
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=27.52 E-value=1.5e+02 Score=34.47 Aligned_cols=61 Identities=15% Similarity=0.190 Sum_probs=42.8
Q ss_pred eeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchHHHHHHHHH
Q 003974 264 LLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDFLSLLKE 328 (782)
Q Consensus 264 ~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~~~~~~~~ 328 (782)
-+-|=||.|||+-.=-+++..+|.-.+ ++|+|+.+++.-.. .--...+..|+++.+.++++
T Consensus 159 ~~~lTaGLGGMgGAQPlA~~mag~v~i---~vEvd~~ri~kR~~-~gyld~~~~~ldeal~~~~~ 219 (545)
T TIGR01228 159 KWVLTAGLGGMGGAQPLAVTMNGGVSI---AVEVDESRIDKRLE-TKYCDEQTDSLDEALARAEE 219 (545)
T ss_pred eEEEEeCCCccccccHHHHHHcCceEE---EEEECHHHHHHHHh-cCcceeEcCCHHHHHHHHHH
Confidence 466789999999554577888997544 79999999876433 22234556677777666554
No 229
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=26.27 E-value=5.2e+02 Score=28.06 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=23.3
Q ss_pred cccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHH
Q 003974 269 SGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSL 305 (782)
Q Consensus 269 ~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~ 305 (782)
-|+|++...+...+...|+.- .+.-+|.++..++..
T Consensus 6 IGaG~vG~~~a~~l~~~g~~~-ei~l~D~~~~~~~~~ 41 (306)
T cd05291 6 IGAGHVGSSFAYSLVNQGIAD-ELVLIDINEEKAEGE 41 (306)
T ss_pred ECCCHHHHHHHHHHHhcCCCC-EEEEEeCCcchhhHh
Confidence 488887777766667778521 124688877765554
No 230
>PF02081 TrpBP: Tryptophan RNA-binding attenuator protein; InterPro: IPR023558 The tryptophan RNA-binding attenuation protein (TRAP) regulates expression of the tryptophan biosynthetic genes in Bacillus sp. by binding to the leader region of the nascent trp operon mRNA []. The crystal structure of the Trp RNA-binding attenuation protein of Bacillus subtilis has been solved []. TRAP forms an oligomeric ring consisting of 11 single-domain subunits, where each subunit adopts a double-stranded beta-helix structure with the appearance of a beta-sandwich of distinct architecture and jelly-roll fold. The 11 subunits are stabilised by 11 inter-subunit strands, forming a beta-wheel with a large central hole. TRAP is activated by binding to tryptophan in clefts between adjacent beta-strands, which induces conformational changes in the protein. Activated TRAP binds an mRNA target sequence consisting of 11 (G/U)AG repeats, separated by 2-3 spacer nucleotides. The spacer nucleotides do not make direct contact with the TRAP protein, but they do influence the conformation of the RNA, which might influence the specificity of TRAP []. This entry represents the structural domain in the TRAP family of proteins.; PDB: 3ZTE_U 1GTN_H 1UTD_D 1GTF_D 1UTF_F 2ZP9_K 1C9S_Q 2EXT_A 3AQD_T 1QAW_C ....
Probab=26.27 E-value=1.7e+02 Score=24.88 Aligned_cols=49 Identities=18% Similarity=0.170 Sum_probs=35.7
Q ss_pred EEEEEEEeccccccccccccCCCCeEEEeCCcCCccccccceeeEEEeeC
Q 003974 150 FKARWFYRAEDTVIKDLACLVDRKRVFLSDVEDDNPLNCIVSKAKIAEVA 199 (782)
Q Consensus 150 v~v~WfyRp~dtv~~~~~~~~~~rELFlS~~~d~~~~~~I~gkc~V~~~~ 199 (782)
|+|.=+-|+.||... +....|..||.+.+-.+..++-.|+||+.|+...
T Consensus 19 V~ViGlTRG~dtkfh-HtEkLDkGEVmIaQFTehtsaiKiRGkA~I~t~~ 67 (75)
T PF02081_consen 19 VTVIGLTRGTDTKFH-HTEKLDKGEVMIAQFTEHTSAIKIRGKAEILTKH 67 (75)
T ss_dssp EEEEEEESSSSSSEE-EEEEE-TT-EEEEE-BSSEEEEEEESSEEEEETT
T ss_pred eEEEEEecCCcccch-hhhccCCCcEEEEEeecceEEEEEeeeEEEEecc
Confidence 556667788887432 2345689999999999999999999999997653
No 231
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=26.19 E-value=22 Score=31.06 Aligned_cols=9 Identities=0% Similarity=-0.193 Sum_probs=0.0
Q ss_pred CCCceEcCC
Q 003974 67 DSDLFFVSP 75 (782)
Q Consensus 67 ~~~~~w~G~ 75 (782)
.+.-.|.|-
T Consensus 62 rkKrrwlwL 70 (81)
T PF14812_consen 62 RKKRRWLWL 70 (81)
T ss_dssp ---------
T ss_pred cccchhHHH
Confidence 334455553
No 232
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=26.04 E-value=86 Score=27.06 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=21.8
Q ss_pred EeeCCEEEEeeCC------CCccEEEEEeEEee
Q 003974 116 YNLGDDAYVKAEE------GAVDYIARIVELFE 142 (782)
Q Consensus 116 y~vGD~V~v~~~~------~~~~~Ia~I~~m~e 142 (782)
++.||+|+|+.++ ++..|||+|...-.
T Consensus 6 Vk~Gd~ViV~~~~~~~~~~~~dWWmg~Vi~~~g 38 (75)
T PF11302_consen 6 VKPGDTVIVQDEQEVGQKQDKDWWMGQVIHCEG 38 (75)
T ss_pred cCCCCEEEEecCccccccCCCCcEEEEEEEEec
Confidence 5889999999974 45679999988743
No 233
>smart00293 PWWP domain with conserved PWWP motif. conservation of Pro-Trp-Trp-Pro residues
Probab=25.64 E-value=93 Score=25.53 Aligned_cols=41 Identities=22% Similarity=0.231 Sum_probs=30.2
Q ss_pred EeeCCEEEEeeCCCCccEEEEEeEEeecC-------CCceEEEEEEEEe
Q 003974 116 YNLGDDAYVKAEEGAVDYIARIVELFESV-------DGEPYFKARWFYR 157 (782)
Q Consensus 116 y~vGD~V~v~~~~~~~~~Ia~I~~m~e~~-------~g~~~v~v~WfyR 157 (782)
|++||-|..+-. +-+.+-|+|..--... ....++.|++|--
T Consensus 1 f~~GdlVwaK~~-G~p~WPa~V~~~~~~~~~~~~~~~~~~~~~V~Ffg~ 48 (63)
T smart00293 1 FKPGDLVWAKMK-GFPWWPALVVSPKETPDNIRKRKRFENLYPVLFFGD 48 (63)
T ss_pred CCCCCEEEEECC-CCCCCCeEEcCcccCChhHhhccCCCCEEEEEEeCC
Confidence 578999999998 6788999998875432 2235777777753
No 234
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=25.17 E-value=75 Score=32.45 Aligned_cols=53 Identities=23% Similarity=0.274 Sum_probs=40.1
Q ss_pred ceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHh-----CCCCcccccchHHH
Q 003974 263 SLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFN-----HPETKVRNEAADDF 322 (782)
Q Consensus 263 ~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N-----~p~~~~~~~d~~~~ 322 (782)
++.||=+|.|-+|.=.. .+--+ +.|||.||.-+...+.| +-++.|+++|+.+.
T Consensus 35 ~~~DLGaGsGiLs~~Aa----~~A~r---ViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y 92 (252)
T COG4076 35 TFADLGAGSGILSVVAA----HAAER---VIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDY 92 (252)
T ss_pred ceeeccCCcchHHHHHH----hhhce---EEEEecCcHHHHHhhhcCCCCCCcceEEEecccccc
Confidence 68899999998886442 23222 36999999999999999 23678899998774
No 235
>cd05840 SPBC215_ISWI_like The PWWP domain is a component of the S. pombe hypothetical protein SPBC215, as well as ISWI complex protein 4. The ISWI (imitation switch) proteins are ATPases responsible for chromatin remodeling in eukaryotes, and SPBC215 is proposed to also bind chromatin. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=24.96 E-value=72 Score=28.61 Aligned_cols=40 Identities=18% Similarity=0.313 Sum_probs=29.6
Q ss_pred EeeCCEEEEeeCCCCccEEEEEeEE-------e--ecCCCceEEEEEEEE
Q 003974 116 YNLGDDAYVKAEEGAVDYIARIVEL-------F--ESVDGEPYFKARWFY 156 (782)
Q Consensus 116 y~vGD~V~v~~~~~~~~~Ia~I~~m-------~--e~~~g~~~v~v~Wfy 156 (782)
|++||.|+.+-. +-|+|.|+|..- - ..+.+...+.|++|-
T Consensus 1 f~~GDlVwaK~~-GyPwWPA~V~~~~~~p~~~l~~~~~~~~~~~~V~FFg 49 (93)
T cd05840 1 FQPGDRVLAKVK-GFPAWPAIVVPEEMLPDSVLKGKKKKNKRTYPVMFFP 49 (93)
T ss_pred CCCCCEEEEeCC-CCCCCCEEECChHHCCHHHHhcccCCCCCeEEEEEeC
Confidence 578999999998 778899999762 1 112344678888884
No 236
>PRK10708 hypothetical protein; Provisional
Probab=24.91 E-value=1.7e+02 Score=23.78 Aligned_cols=43 Identities=21% Similarity=0.439 Sum_probs=28.9
Q ss_pred eeCCEEEEeeCCCCccEEEEEeEEeecCCCceEE-------EEEEEEeccc
Q 003974 117 NLGDDAYVKAEEGAVDYIARIVELFESVDGEPYF-------KARWFYRAED 160 (782)
Q Consensus 117 ~vGD~V~v~~~~~~~~~Ia~I~~m~e~~~g~~~v-------~v~WfyRp~d 160 (782)
+|.|.|.|+.+ +.+-..|.|..+-+=..|.+++ .+.||+--.+
T Consensus 2 kvnD~VtVKTD-G~~rR~G~iLavE~F~EG~MyLvaL~dYP~GiWFFNE~~ 51 (62)
T PRK10708 2 KVNDRVTVKTD-GGPRRPGVVLAVEEFSEGTMYLVSLEDYPLGIWFFNEAG 51 (62)
T ss_pred ccccEEEEecC-CCccccceEEEEeeccCcEEEEEEcCcCCCceEEEeccC
Confidence 57899999988 4555667776654445665543 4678886444
No 237
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=24.01 E-value=1.3e+02 Score=31.58 Aligned_cols=58 Identities=16% Similarity=0.160 Sum_probs=45.3
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchHHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDF 322 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~~ 322 (782)
..-.++||=||.|-.+.=|. .+.-+.. +-++|.++.-++.-+...|++....+|+.++
T Consensus 30 ~~~~v~DLGCGpGnsTelL~--~RwP~A~---i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w 87 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLA--RRWPDAV---ITGIDSSPAMLAKAAQRLPDATFEEADLRTW 87 (257)
T ss_pred ccceeeecCCCCCHHHHHHH--HhCCCCe---EeeccCCHHHHHHHHHhCCCCceecccHhhc
Confidence 44689999999998776553 2334443 3599999999999999999999888888775
No 238
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=23.15 E-value=1.1e+02 Score=30.27 Aligned_cols=44 Identities=25% Similarity=0.225 Sum_probs=27.8
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
...++|+|=||+|-.++.++ ...|..-+ .+-|.++ +...++.|-
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a---~~~~~~~V--v~TD~~~-~l~~l~~Ni 88 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAA---KLFGAARV--VLTDYNE-VLELLRRNI 88 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHH---HT-T-SEE--EEEE-S--HHHHHHHHH
T ss_pred CCceEEEECCccchhHHHHH---hccCCceE--EEeccch-hhHHHHHHH
Confidence 45699999999996665552 23243322 4899999 988888873
No 239
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=22.90 E-value=2.6e+02 Score=32.76 Aligned_cols=62 Identities=19% Similarity=0.176 Sum_probs=39.3
Q ss_pred eeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchHHHHHHHHHH
Q 003974 264 LLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDFLSLLKEW 329 (782)
Q Consensus 264 ~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~~~~~~~~~ 329 (782)
-+-|=||.|||+-.=-+.+..+|.-. ..+|+|+.+++.-... .=...+..|+++.+.++++.
T Consensus 158 k~~lTaGLGGMgGAQplA~~m~g~v~---l~vEvd~~ri~kR~~~-g~ld~~~~~ldea~~~~~ea 219 (546)
T PF01175_consen 158 KLFLTAGLGGMGGAQPLAATMAGGVG---LIVEVDPSRIEKRLEQ-GYLDEVTDDLDEALARAKEA 219 (546)
T ss_dssp -EEEEE--STTCCHHHHHHHHTT-EE---EEEES-HHHHHHHHHT-TSSSEEESSHHHHHHHHHHH
T ss_pred eEEEEecccccccchHHHHHhcCceE---EEEEECHHHHHHHHhC-CCeeEEcCCHHHHHHHHHHh
Confidence 35577999999955557778888754 3799999998764332 22345667888887776663
No 240
>PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified []. The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. It is present in proteins of nuclear origin and plays a role in cell growth and differentiation. Due to its position, the composition of amino acids close to the PWWP motif and the pattern of other domains present it has been suggested that the domain is involved in protein-protein interactions [].; PDB: 3LYI_B 2L89_A 2NLU_A 1RI0_A 1KHC_A 3QKJ_C 2DAQ_A 1N27_A 3PFS_B 3QJ6_A ....
Probab=22.10 E-value=99 Score=26.52 Aligned_cols=41 Identities=22% Similarity=0.258 Sum_probs=29.0
Q ss_pred EeeCCEEEEeeCCCCccEEEEEeEEeec---CCCceEEEEEEEEe
Q 003974 116 YNLGDDAYVKAEEGAVDYIARIVELFES---VDGEPYFKARWFYR 157 (782)
Q Consensus 116 y~vGD~V~v~~~~~~~~~Ia~I~~m~e~---~~g~~~v~v~WfyR 157 (782)
|++||-|..+-. +-+.|.|+|...-+. ......+.|.||--
T Consensus 1 f~~GdlVWaK~~-g~pwWPa~V~~~~~~~~~~~~~~~~~V~Ffg~ 44 (86)
T PF00855_consen 1 FRPGDLVWAKLK-GYPWWPARVCDPDEKSKKKRKDGHVLVRFFGD 44 (86)
T ss_dssp -STTEEEEEEET-TSEEEEEEEEECCHCTSCSSSSTEEEEEETTT
T ss_pred CCCCCEEEEEeC-CCCCCceEEeecccccccCCCCCEEEEEecCC
Confidence 678999999987 678899999887532 22235667776653
No 241
>PRK05414 urocanate hydratase; Provisional
Probab=21.60 E-value=2.3e+02 Score=33.21 Aligned_cols=61 Identities=20% Similarity=0.266 Sum_probs=42.4
Q ss_pred eeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchHHHHHHHHH
Q 003974 264 LLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDFLSLLKE 328 (782)
Q Consensus 264 ~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~~~~~~~~ 328 (782)
-+-|=||.|||+=.=-+++..+|.-.+ ++|+|+.+++.-.. .--...+..|+++.+.++++
T Consensus 168 ~~~lTaGLGGMgGAQPlA~~mag~v~i---~vEvd~~ri~kR~~-~gyld~~~~~Ldeal~~~~~ 228 (556)
T PRK05414 168 RLVLTAGLGGMGGAQPLAATMAGAVCL---AVEVDESRIDKRLR-TGYLDEKADDLDEALALAEE 228 (556)
T ss_pred eEEEEecCCccccccHHHHHhcCceEE---EEEECHHHHHHHHh-CCcceeEcCCHHHHHHHHHH
Confidence 456789999999554477888997543 79999999876433 22234556677777665554
No 242
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=21.22 E-value=95 Score=34.70 Aligned_cols=53 Identities=21% Similarity=0.202 Sum_probs=38.3
Q ss_pred CCCCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccch
Q 003974 258 GQPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAA 319 (782)
Q Consensus 258 ~~~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~ 319 (782)
....+++|||=|+.||++.=| ...|..| .|||..+-+-. -+++|...++.+|.
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L----~~rG~~V---~AVD~g~l~~~--L~~~~~V~h~~~d~ 261 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQL----VRRGMFV---TAVDNGPMAQS--LMDTGQVEHLRADG 261 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHH----HHcCCEE---EEEechhcCHh--hhCCCCEEEEeccC
Confidence 456789999999999999777 5678865 49997765533 25677766665543
No 243
>PF10781 DSRB: Dextransucrase DSRB; InterPro: IPR019717 DSRB is a novel dextransucrase which produces a dextran different from the typical dextran, as it contains (1-6) and (1-2) linkages, when this strain is grown in the presence of sucrose [].
Probab=21.21 E-value=2.5e+02 Score=22.90 Aligned_cols=44 Identities=23% Similarity=0.463 Sum_probs=29.0
Q ss_pred eeCCEEEEeeCCCCccEEEEEeEEeecCCCceEE-------EEEEEEecccc
Q 003974 117 NLGDDAYVKAEEGAVDYIARIVELFESVDGEPYF-------KARWFYRAEDT 161 (782)
Q Consensus 117 ~vGD~V~v~~~~~~~~~Ia~I~~m~e~~~g~~~v-------~v~WfyRp~dt 161 (782)
+|.|.|.|+.+ +.+-.-|.|..+-+=..|.+++ .+.||+--.+.
T Consensus 2 kvnD~VtVKTD-G~~rR~G~ilavE~F~EG~MYLvaL~dYP~GiWFFNE~~~ 52 (62)
T PF10781_consen 2 KVNDRVTVKTD-GGPRREGVILAVEPFNEGTMYLVALEDYPAGIWFFNEKDS 52 (62)
T ss_pred ccccEEEEecC-CcccccceEEEEeeccCcEEEEEEcCcCCcceEEEecCCC
Confidence 57899999988 4555666666654445665543 46788874443
No 244
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=21.05 E-value=2.6e+02 Score=22.30 Aligned_cols=27 Identities=22% Similarity=0.443 Sum_probs=21.4
Q ss_pred EeeCCEEEEeeCCCCccEEEEEeEEeec
Q 003974 116 YNLGDDAYVKAEEGAVDYIARIVELFES 143 (782)
Q Consensus 116 y~vGD~V~v~~~~~~~~~Ia~I~~m~e~ 143 (782)
+.||+.|++.-. +...|-|+|.++-..
T Consensus 1 ~~vG~~v~~~~~-~~~~y~A~I~~~r~~ 27 (55)
T PF11717_consen 1 FEVGEKVLCKYK-DGQWYEAKILDIREK 27 (55)
T ss_dssp --TTEEEEEEET-TTEEEEEEEEEEEEC
T ss_pred CCcCCEEEEEEC-CCcEEEEEEEEEEec
Confidence 468999999983 567899999999884
No 245
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=20.95 E-value=1.4e+02 Score=31.99 Aligned_cols=45 Identities=18% Similarity=0.168 Sum_probs=31.1
Q ss_pred CCcceeccccccchh--HHHHHHhhhhc-------CCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAM--STGLCIGASLS-------GVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~--s~Gl~~g~~~a-------G~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
..++++|+-||.|.- |+.+.+ ... +++ +.|+|+++.+.+.-+.+.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l--~e~~~~~~~~~~~---I~g~Dis~~~L~~Ar~~~ 152 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLL--AETLPKAREPDVK---ILATDIDLKALEKARAGI 152 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHH--HHHhhhcCCCCeE---EEEEECCHHHHHHHHcCC
Confidence 458999999999973 333211 111 344 369999999999888763
No 246
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=20.94 E-value=1.2e+02 Score=32.82 Aligned_cols=43 Identities=16% Similarity=0.282 Sum_probs=27.8
Q ss_pred CCCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHH
Q 003974 259 QPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKF 307 (782)
Q Consensus 259 ~~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~ 307 (782)
++-.+||||=||.||++.=+. +.-|++|+ +|.+++.-.+-.+.
T Consensus 61 ~~G~~vLDiGcGwG~~~~~~a---~~~g~~v~---gitlS~~Q~~~a~~ 103 (273)
T PF02353_consen 61 KPGDRVLDIGCGWGGLAIYAA---ERYGCHVT---GITLSEEQAEYARE 103 (273)
T ss_dssp -TT-EEEEES-TTSHHHHHHH---HHH--EEE---EEES-HHHHHHHHH
T ss_pred CCCCEEEEeCCCccHHHHHHH---HHcCcEEE---EEECCHHHHHHHHH
Confidence 355799999999999887663 44488865 89998877665544
No 247
>PF08940 DUF1918: Domain of unknown function (DUF1918); InterPro: IPR015035 This domain is found in various hypothetical bacterial proteins, and has no known function. ; PDB: 2A7Y_A.
Probab=20.64 E-value=1.5e+02 Score=24.36 Aligned_cols=39 Identities=33% Similarity=0.514 Sum_probs=26.1
Q ss_pred eeCCEEEEeeCC-CCccEEEEEeEEeecCCCceEEEEEEEE
Q 003974 117 NLGDDAYVKAEE-GAVDYIARIVELFESVDGEPYFKARWFY 156 (782)
Q Consensus 117 ~vGD~V~v~~~~-~~~~~Ia~I~~m~e~~~g~~~v~v~Wfy 156 (782)
++||.+.+...- +.+...|.|.++-- .+|..=+.|+|--
T Consensus 4 ~vGD~lvv~g~~vg~~~r~GeIveV~g-~dG~PPY~VRw~D 43 (58)
T PF08940_consen 4 SVGDRLVVHGRTVGQPDRHGEIVEVRG-PDGSPPYLVRWDD 43 (58)
T ss_dssp -TTEEEEES-TTTS--EEEEEEEE-S--SSS-S-EEEEETT
T ss_pred CCCCEEEEcCCcCCCCCcEeEEEEEEC-CCCCCCEEEEecC
Confidence 689999999986 78889999999865 5777888888854
No 248
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=20.03 E-value=1.5e+02 Score=30.78 Aligned_cols=53 Identities=21% Similarity=0.229 Sum_probs=43.7
Q ss_pred cccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchHHH
Q 003974 267 LYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDF 322 (782)
Q Consensus 267 lf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~~ 322 (782)
+..|+|=+...++..+...|.+++ +||.|+..++.+...-..+.++..|+.+-
T Consensus 4 iIiG~G~vG~~va~~L~~~g~~Vv---~Id~d~~~~~~~~~~~~~~~~v~gd~t~~ 56 (225)
T COG0569 4 IIIGAGRVGRSVARELSEEGHNVV---LIDRDEERVEEFLADELDTHVVIGDATDE 56 (225)
T ss_pred EEECCcHHHHHHHHHHHhCCCceE---EEEcCHHHHHHHhhhhcceEEEEecCCCH
Confidence 356899888888888899999986 89999999999888666677777777664
Done!