Query 003974
Match_columns 782
No_of_seqs 409 out of 2593
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 10:05:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003974.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003974hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ft4_B DNA (cytosine-5)-methyl 100.0 8E-112 3E-116 1024.5 41.2 698 67-781 4-716 (784)
2 3swr_A DNA (cytosine-5)-methyl 100.0 3E-100 1E-104 922.2 46.8 611 20-781 87-973 (1002)
3 3av4_A DNA (cytosine-5)-methyl 100.0 4.2E-93 1.4E-97 877.0 45.4 609 20-781 398-1283(1330)
4 3g7u_A Cytosine-specific methy 100.0 1.8E-65 6.1E-70 567.7 21.2 330 261-780 2-341 (376)
5 3ubt_Y Modification methylase 100.0 4.3E-55 1.5E-59 477.1 18.3 190 262-605 1-190 (331)
6 2c7p_A Modification methylase 100.0 5.6E-53 1.9E-57 459.6 23.1 284 258-780 8-296 (327)
7 1g55_A DNA cytosine methyltran 100.0 3.1E-49 1.1E-53 433.4 15.9 178 261-564 2-181 (343)
8 3qv2_A 5-cytosine DNA methyltr 100.0 2.1E-47 7.3E-52 415.0 21.6 179 257-564 6-190 (327)
9 4h0n_A DNMT2; SAH binding, tra 100.0 1.2E-46 4.1E-51 410.3 18.9 170 260-554 2-172 (333)
10 4dkj_A Cytosine-specific methy 100.0 1.2E-46 4.2E-51 418.7 10.4 118 443-564 123-248 (403)
11 3me5_A Cytosine-specific methy 100.0 2.7E-44 9.1E-49 407.6 16.4 190 259-555 86-292 (482)
12 2qrv_A DNA (cytosine-5)-methyl 100.0 5.4E-43 1.8E-47 375.0 16.8 164 257-551 12-182 (295)
13 1w4s_A Polybromo, polybromo 1 99.9 5.6E-27 1.9E-31 232.4 7.4 134 101-236 12-146 (174)
14 2pv0_B DNA (cytosine-5)-methyl 99.9 5.9E-26 2E-30 246.0 9.2 98 444-564 236-340 (386)
15 2qrv_B DNA (cytosine-5)-methyl 99.9 4.7E-26 1.6E-30 231.7 7.0 98 444-564 80-184 (230)
16 4dov_A ORC1, origin recognitio 99.9 3E-22 1E-26 190.9 16.3 147 66-235 3-163 (163)
17 3swr_A DNA (cytosine-5)-methyl 99.7 1E-17 3.6E-22 203.2 13.3 137 102-238 321-507 (1002)
18 3av4_A DNA (cytosine-5)-methyl 99.7 1.6E-16 5.4E-21 197.1 11.6 136 102-237 633-817 (1330)
19 1m4z_A Origin recognition comp 98.8 1.2E-08 4E-13 103.7 8.9 121 111-233 48-191 (238)
20 2fl7_A Regulatory protein SIR3 98.8 1.3E-08 4.6E-13 102.8 9.2 121 111-233 48-191 (232)
21 2igt_A SAM dependent methyltra 98.5 5.6E-07 1.9E-11 97.7 13.2 97 444-549 224-323 (332)
22 2rso_A Chromatin-associated pr 97.9 1.2E-06 4.1E-11 77.0 -0.9 60 370-433 24-84 (92)
23 1g6z_A CLR4 protein; transfera 97.9 1.5E-06 5.2E-11 72.4 -0.3 61 374-439 6-67 (70)
24 3c0k_A UPF0064 protein YCCW; P 97.8 9.6E-05 3.3E-09 81.8 12.2 44 260-309 220-263 (396)
25 2rsn_A Chromo domain-containin 97.8 1.7E-06 5.7E-11 73.1 -1.7 56 373-433 18-73 (75)
26 3lwe_A M-phase phosphoprotein 97.6 1.7E-06 6E-11 70.3 -4.3 52 376-433 4-55 (62)
27 4hae_A CDY-like 2, chromodomai 97.6 1E-06 3.5E-11 75.5 -5.9 55 373-432 20-74 (81)
28 3fdt_A Chromobox protein homol 97.5 3.1E-06 1.1E-10 68.1 -3.9 51 376-433 3-53 (59)
29 3f2u_A Chromobox protein homol 97.5 4.3E-06 1.5E-10 66.3 -3.4 38 395-433 15-52 (55)
30 2dnv_A Chromobox protein homol 97.3 2.6E-05 8.8E-10 63.8 -0.8 53 374-433 8-60 (64)
31 1q3l_A Heterochromatin protein 97.3 8.9E-06 3E-10 67.4 -3.6 53 374-433 14-66 (69)
32 1ap0_A Modifier protein 1; chr 97.3 2.6E-05 8.9E-10 65.4 -1.1 53 374-433 11-63 (73)
33 1wy7_A Hypothetical protein PH 97.3 0.00089 3.1E-08 66.3 10.0 45 261-311 50-94 (207)
34 2dnt_A Chromodomain protein, Y 97.3 3.3E-05 1.1E-09 65.7 -0.5 57 373-434 10-66 (78)
35 3cgg_A SAM-dependent methyltra 97.2 0.0029 1E-07 61.2 13.1 52 260-318 46-97 (195)
36 3g7l_A Chromo domain-containin 97.2 1.6E-05 5.6E-10 64.3 -3.1 53 374-433 5-58 (61)
37 2k1b_A Chromobox protein homol 97.2 1.8E-05 6.2E-10 66.3 -2.9 52 374-432 19-70 (73)
38 1pdq_A Polycomb protein; methy 97.2 1.5E-05 5E-10 66.6 -3.7 52 374-432 18-69 (72)
39 3ajd_A Putative methyltransfer 97.1 0.0024 8.3E-08 66.8 11.7 57 260-321 83-145 (274)
40 2frn_A Hypothetical protein PH 97.0 0.0017 5.8E-08 68.2 9.3 43 261-309 126-168 (278)
41 2d9u_A Chromobox protein homol 96.9 8E-05 2.7E-09 62.7 -1.4 54 374-434 8-61 (74)
42 4dmg_A Putative uncharacterize 96.8 0.0039 1.3E-07 69.0 10.8 43 260-309 214-256 (393)
43 2b78_A Hypothetical protein SM 96.8 0.0036 1.2E-07 69.0 10.4 56 261-322 213-275 (385)
44 3gdh_A Trimethylguanosine synt 96.8 0.0015 5.1E-08 66.4 6.2 43 260-309 78-120 (241)
45 3i91_A Chromobox protein homol 96.7 0.00055 1.9E-08 53.8 2.2 38 394-432 15-52 (54)
46 1ne2_A Hypothetical protein TA 96.7 0.0037 1.3E-07 61.6 8.8 50 261-316 52-101 (200)
47 3lpm_A Putative methyltransfer 96.7 0.014 4.7E-07 60.2 13.0 44 260-309 49-92 (259)
48 3mts_A Histone-lysine N-methyl 96.7 0.00067 2.3E-08 55.3 2.2 38 395-433 13-50 (64)
49 2kvm_A Chromobox protein homol 96.6 9.8E-05 3.4E-09 62.1 -3.1 52 375-433 12-63 (74)
50 1wxx_A TT1595, hypothetical pr 96.6 0.0095 3.2E-07 65.4 11.6 56 260-322 209-269 (382)
51 3h91_A Chromobox protein homol 96.6 0.0008 2.7E-08 52.9 2.0 38 394-432 15-52 (54)
52 3k6r_A Putative transferase PH 96.5 0.0025 8.5E-08 67.2 6.2 43 261-309 126-168 (278)
53 2as0_A Hypothetical protein PH 96.5 0.0068 2.3E-07 66.9 9.6 44 260-309 217-260 (396)
54 1pfb_A Polycomb protein; chrom 96.5 0.001 3.5E-08 52.5 2.1 37 395-432 16-52 (55)
55 2yxd_A Probable cobalt-precorr 96.5 0.019 6.6E-07 54.8 11.6 43 260-309 35-77 (183)
56 2ift_A Putative methylase HI07 96.2 0.0082 2.8E-07 59.5 7.6 43 261-309 54-96 (201)
57 2fpo_A Methylase YHHF; structu 96.1 0.0096 3.3E-07 59.1 7.3 43 261-309 55-97 (202)
58 3evz_A Methyltransferase; NYSG 96.0 0.035 1.2E-06 55.6 11.2 44 260-309 55-99 (230)
59 3m4x_A NOL1/NOP2/SUN family pr 96.0 0.012 4.1E-07 66.3 8.3 46 260-309 105-150 (456)
60 3q87_B N6 adenine specific DNA 95.9 0.043 1.5E-06 52.7 10.7 36 261-304 24-59 (170)
61 3bt7_A TRNA (uracil-5-)-methyl 95.9 0.0081 2.8E-07 65.7 6.1 54 262-322 215-273 (369)
62 1uwv_A 23S rRNA (uracil-5-)-me 95.8 0.036 1.2E-06 61.9 11.1 42 261-309 287-328 (433)
63 3mti_A RRNA methylase; SAM-dep 95.7 0.093 3.2E-06 50.5 12.5 43 260-309 22-64 (185)
64 3m6w_A RRNA methylase; rRNA me 95.7 0.016 5.5E-07 65.4 7.8 58 260-321 101-162 (464)
65 1ws6_A Methyltransferase; stru 95.7 0.024 8.4E-07 53.5 8.0 54 261-321 42-99 (171)
66 3a27_A TYW2, uncharacterized p 95.5 0.054 1.8E-06 56.4 10.7 43 261-309 120-163 (272)
67 3v97_A Ribosomal RNA large sub 95.5 0.026 9E-07 67.0 9.3 43 261-309 540-582 (703)
68 1y8c_A S-adenosylmethionine-de 95.4 0.069 2.3E-06 53.5 10.6 44 260-310 37-80 (246)
69 2f8l_A Hypothetical protein LM 95.4 0.094 3.2E-06 56.4 12.3 49 260-309 130-179 (344)
70 2jjq_A Uncharacterized RNA met 95.3 0.026 9E-07 62.9 7.7 42 261-309 291-332 (425)
71 2ozv_A Hypothetical protein AT 95.3 0.14 4.9E-06 52.8 12.7 46 261-311 37-82 (260)
72 1ixk_A Methyltransferase; open 95.2 0.023 7.7E-07 60.7 6.4 44 260-309 118-163 (315)
73 3e23_A Uncharacterized protein 95.2 0.11 3.6E-06 51.2 10.9 43 260-309 43-85 (211)
74 1x3p_A Cpsrp43; chromo-2 domai 95.1 0.0073 2.5E-07 47.4 1.8 33 396-432 15-48 (54)
75 1yzh_A TRNA (guanine-N(7)-)-me 95.1 0.038 1.3E-06 54.9 7.6 44 261-309 42-85 (214)
76 3ll7_A Putative methyltransfer 95.1 0.016 5.6E-07 64.2 5.2 41 262-309 95-135 (410)
77 3hnr_A Probable methyltransfer 95.0 0.14 4.8E-06 50.5 11.5 50 260-316 45-95 (220)
78 3eey_A Putative rRNA methylase 95.0 0.17 5.7E-06 49.2 11.9 44 260-309 22-67 (197)
79 3p9n_A Possible methyltransfer 95.0 0.03 1E-06 54.5 6.3 58 260-323 44-106 (189)
80 3e8s_A Putative SAM dependent 95.0 0.48 1.6E-05 46.5 15.2 53 261-321 53-105 (227)
81 2b9e_A NOL1/NOP2/SUN domain fa 94.9 0.037 1.3E-06 59.1 7.1 46 260-309 102-147 (309)
82 2fhp_A Methylase, putative; al 94.9 0.06 2.1E-06 51.7 8.1 44 260-309 44-87 (187)
83 3lcc_A Putative methyl chlorid 94.9 0.19 6.4E-06 50.4 12.1 43 262-311 68-110 (235)
84 2frx_A Hypothetical protein YE 94.8 0.045 1.5E-06 62.0 7.9 44 260-309 117-162 (479)
85 2dul_A N(2),N(2)-dimethylguano 94.6 0.046 1.6E-06 60.0 7.2 43 261-309 48-91 (378)
86 3dtn_A Putative methyltransfer 94.5 0.083 2.8E-06 52.9 8.3 47 260-311 44-90 (234)
87 3e05_A Precorrin-6Y C5,15-meth 94.5 0.23 7.8E-06 48.6 11.3 43 260-309 40-84 (204)
88 1nv8_A HEMK protein; class I a 94.4 0.035 1.2E-06 58.4 5.3 42 262-309 125-166 (284)
89 2fca_A TRNA (guanine-N(7)-)-me 94.2 0.18 6.2E-06 50.2 9.8 43 261-308 39-81 (213)
90 3axs_A Probable N(2),N(2)-dime 94.1 0.043 1.5E-06 60.5 5.6 58 261-323 53-118 (392)
91 4dzr_A Protein-(glutamine-N5) 94.1 0.033 1.1E-06 54.6 4.1 48 259-311 29-76 (215)
92 3tm4_A TRNA (guanine N2-)-meth 94.1 0.2 7E-06 54.6 10.8 43 260-309 217-261 (373)
93 2h1r_A Dimethyladenosine trans 94.1 0.042 1.4E-06 58.2 5.1 42 261-309 43-84 (299)
94 2yxl_A PH0851 protein, 450AA l 94.0 0.064 2.2E-06 60.2 6.7 45 260-309 259-304 (450)
95 2b3t_A Protein methyltransfera 94.0 0.064 2.2E-06 55.7 6.3 45 260-309 109-153 (276)
96 2oyr_A UPF0341 protein YHIQ; a 93.8 0.061 2.1E-06 55.9 5.6 41 262-309 90-130 (258)
97 1inl_A Spermidine synthase; be 93.7 0.75 2.6E-05 48.4 14.0 44 262-310 92-135 (296)
98 2epb_A Chromodomain-helicase-D 93.6 0.006 2.1E-07 50.2 -1.9 60 371-432 6-65 (68)
99 2esr_A Methyltransferase; stru 93.5 0.075 2.5E-06 50.8 5.4 57 260-322 31-93 (177)
100 1l3i_A Precorrin-6Y methyltran 93.5 0.47 1.6E-05 45.1 11.1 43 260-309 33-75 (192)
101 3d2l_A SAM-dependent methyltra 93.3 0.9 3.1E-05 45.2 13.4 40 262-309 35-74 (243)
102 3tma_A Methyltransferase; thum 93.2 0.077 2.6E-06 57.3 5.4 45 260-310 203-249 (354)
103 2b2y_C CHD-1, chromodomain-hel 93.1 0.038 1.3E-06 49.9 2.3 61 373-433 33-97 (115)
104 3dmg_A Probable ribosomal RNA 93.1 0.17 5.9E-06 55.5 8.0 44 260-310 233-276 (381)
105 1sqg_A SUN protein, FMU protei 93.0 0.086 2.9E-06 58.7 5.7 45 260-309 246-290 (429)
106 3h2b_A SAM-dependent methyltra 92.8 0.12 4.1E-06 50.4 5.7 55 261-322 42-96 (203)
107 2oo3_A Protein involved in cat 92.4 0.13 4.4E-06 54.0 5.6 55 261-322 92-149 (283)
108 1qam_A ERMC' methyltransferase 92.2 0.11 3.7E-06 53.2 4.7 55 260-321 30-87 (244)
109 2r6z_A UPF0341 protein in RSP 92.1 0.13 4.4E-06 53.3 5.2 55 262-323 85-152 (258)
110 1m6y_A S-adenosyl-methyltransf 91.9 0.21 7.1E-06 53.0 6.6 57 260-322 26-87 (301)
111 1zq9_A Probable dimethyladenos 91.7 0.14 4.7E-06 53.7 4.9 44 260-310 28-71 (285)
112 2ih2_A Modification methylase 91.6 0.36 1.2E-05 52.9 8.4 38 261-304 40-79 (421)
113 2yx1_A Hypothetical protein MJ 91.6 0.11 3.8E-06 55.8 4.1 54 261-322 196-255 (336)
114 3m33_A Uncharacterized protein 91.5 0.21 7E-06 50.0 5.8 53 260-319 48-100 (226)
115 3njr_A Precorrin-6Y methylase; 91.2 0.18 6.1E-06 49.9 4.9 55 260-321 55-115 (204)
116 3k0b_A Predicted N6-adenine-sp 91.1 0.29 9.8E-06 53.9 6.8 49 260-309 201-283 (393)
117 3ldu_A Putative methylase; str 91.0 0.16 5.5E-06 55.8 4.7 49 260-309 195-277 (385)
118 3tqs_A Ribosomal RNA small sub 90.8 0.14 4.7E-06 53.0 3.8 55 261-322 30-87 (255)
119 3pfg_A N-methyltransferase; N, 90.7 0.2 6.9E-06 51.1 4.9 55 261-322 51-105 (263)
120 4fzv_A Putative methyltransfer 90.4 0.46 1.6E-05 51.7 7.5 46 259-309 147-192 (359)
121 2qm3_A Predicted methyltransfe 89.9 1 3.5E-05 48.9 9.9 42 261-310 173-216 (373)
122 3fut_A Dimethyladenosine trans 89.7 0.23 7.8E-06 51.9 4.3 55 260-322 47-103 (271)
123 2zig_A TTHA0409, putative modi 89.5 0.28 9.7E-06 51.6 4.9 43 260-309 235-277 (297)
124 3ldg_A Putative uncharacterize 89.1 0.4 1.4E-05 52.6 5.8 49 260-309 194-276 (384)
125 3m70_A Tellurite resistance pr 88.9 0.29 9.9E-06 50.6 4.4 55 260-321 120-178 (286)
126 2vdv_E TRNA (guanine-N(7)-)-me 88.9 0.36 1.2E-05 49.0 5.0 57 260-321 49-118 (246)
127 3ggd_A SAM-dependent methyltra 88.7 0.37 1.3E-05 48.4 5.0 57 259-322 55-113 (245)
128 2gb4_A Thiopurine S-methyltran 88.5 0.38 1.3E-05 49.5 4.9 43 260-309 68-110 (252)
129 3dxy_A TRNA (guanine-N(7)-)-me 88.4 0.65 2.2E-05 46.5 6.4 59 260-323 34-97 (218)
130 2okc_A Type I restriction enzy 88.2 2.5 8.6E-05 47.0 11.7 46 260-308 171-227 (445)
131 2pxx_A Uncharacterized protein 87.9 0.54 1.8E-05 45.7 5.4 55 260-320 42-99 (215)
132 1pjz_A Thiopurine S-methyltran 87.8 0.35 1.2E-05 47.7 4.0 43 260-309 22-64 (203)
133 2ar0_A M.ecoki, type I restric 87.8 4.1 0.00014 46.6 13.5 49 260-308 169-230 (541)
134 3gru_A Dimethyladenosine trans 87.6 0.24 8.1E-06 52.4 2.7 55 261-322 51-108 (295)
135 1iy9_A Spermidine synthase; ro 87.6 0.64 2.2E-05 48.3 6.1 57 262-323 77-142 (275)
136 2ee1_A Chromodomain helicase-D 87.5 0.089 3E-06 42.6 -0.5 55 371-430 6-61 (64)
137 1xdz_A Methyltransferase GIDB; 87.3 0.57 2E-05 47.2 5.4 57 261-322 71-132 (240)
138 3ofk_A Nodulation protein S; N 87.3 0.31 1.1E-05 47.9 3.2 55 260-321 51-108 (216)
139 1ve3_A Hypothetical protein PH 87.2 0.54 1.9E-05 46.3 5.0 54 261-321 39-96 (227)
140 3bxo_A N,N-dimethyltransferase 87.0 0.49 1.7E-05 47.1 4.5 55 260-321 40-94 (239)
141 3ftd_A Dimethyladenosine trans 87.0 0.31 1.1E-05 50.1 3.2 53 261-321 32-87 (249)
142 3iv6_A Putative Zn-dependent a 86.9 0.65 2.2E-05 48.2 5.5 46 260-312 45-90 (261)
143 3l8d_A Methyltransferase; stru 86.8 0.44 1.5E-05 47.5 4.2 55 260-321 53-109 (242)
144 1g60_A Adenine-specific methyl 86.8 0.42 1.4E-05 49.3 4.0 44 260-310 212-255 (260)
145 3uzu_A Ribosomal RNA small sub 86.7 0.33 1.1E-05 50.8 3.2 56 260-322 42-102 (279)
146 3tfw_A Putative O-methyltransf 86.6 0.72 2.4E-05 46.9 5.6 57 261-323 64-128 (248)
147 3tr6_A O-methyltransferase; ce 86.3 0.97 3.3E-05 44.6 6.3 57 261-323 65-129 (225)
148 2h00_A Methyltransferase 10 do 86.2 0.67 2.3E-05 47.0 5.2 45 260-309 65-109 (254)
149 3g89_A Ribosomal RNA small sub 86.1 0.77 2.6E-05 47.0 5.5 58 260-322 80-142 (249)
150 1o9g_A RRNA methyltransferase; 86.0 0.45 1.5E-05 48.2 3.7 49 260-311 51-99 (250)
151 1vbf_A 231AA long hypothetical 85.9 0.63 2.2E-05 46.2 4.7 54 260-320 70-126 (231)
152 2p35_A Trans-aconitate 2-methy 85.9 0.78 2.7E-05 46.2 5.5 57 260-321 33-89 (259)
153 4htf_A S-adenosylmethionine-de 85.8 0.56 1.9E-05 48.4 4.4 55 261-322 69-129 (285)
154 3lbf_A Protein-L-isoaspartate 85.8 0.8 2.7E-05 44.7 5.3 55 260-321 77-136 (210)
155 1wzn_A SAM-dependent methyltra 85.8 0.68 2.3E-05 46.6 5.0 55 260-321 41-99 (252)
156 2p7i_A Hypothetical protein; p 85.8 0.89 3E-05 45.2 5.7 54 261-321 43-97 (250)
157 3i9f_A Putative type 11 methyl 85.7 0.65 2.2E-05 43.7 4.5 52 260-318 17-68 (170)
158 3duw_A OMT, O-methyltransferas 85.5 1.2 4E-05 44.0 6.4 58 260-323 58-123 (223)
159 3g5l_A Putative S-adenosylmeth 85.4 0.82 2.8E-05 46.1 5.3 56 260-321 44-101 (253)
160 3ou2_A SAM-dependent methyltra 85.1 0.53 1.8E-05 46.0 3.7 54 261-321 47-101 (218)
161 1dus_A MJ0882; hypothetical pr 85.1 0.91 3.1E-05 43.1 5.3 43 260-309 52-94 (194)
162 2qfm_A Spermine synthase; sper 85.1 1.2 4E-05 48.4 6.6 58 260-323 188-258 (364)
163 1zx0_A Guanidinoacetate N-meth 85.1 0.79 2.7E-05 45.9 5.0 57 260-322 60-120 (236)
164 3bzb_A Uncharacterized protein 84.9 0.86 2.9E-05 47.4 5.3 43 261-309 80-123 (281)
165 1mjf_A Spermidine synthase; sp 84.6 1.2 4.1E-05 46.4 6.3 56 262-323 77-147 (281)
166 4dcm_A Ribosomal RNA large sub 84.4 0.85 2.9E-05 49.8 5.2 44 261-310 223-267 (375)
167 2xvm_A Tellurite resistance pr 84.3 0.8 2.7E-05 43.9 4.5 54 261-321 33-91 (199)
168 3dli_A Methyltransferase; PSI- 84.1 1.2 4E-05 44.6 5.8 53 260-322 41-93 (240)
169 2kw5_A SLR1183 protein; struct 84.0 0.72 2.5E-05 44.7 4.0 52 263-321 32-87 (202)
170 1yb2_A Hypothetical protein TA 83.8 0.75 2.6E-05 47.5 4.2 55 260-320 110-172 (275)
171 2yqz_A Hypothetical protein TT 83.8 0.94 3.2E-05 45.7 4.9 55 260-321 39-97 (263)
172 3ccf_A Cyclopropane-fatty-acyl 83.7 1.2 4.1E-05 45.7 5.8 55 260-321 57-111 (279)
173 3sm3_A SAM-dependent methyltra 83.7 1.3 4.3E-05 43.7 5.7 46 260-312 30-75 (235)
174 3ujc_A Phosphoethanolamine N-m 83.4 0.99 3.4E-05 45.5 4.9 56 260-321 55-113 (266)
175 3ntv_A MW1564 protein; rossman 83.3 0.95 3.3E-05 45.4 4.7 57 261-322 72-134 (232)
176 3bkw_A MLL3908 protein, S-aden 83.1 1.4 4.9E-05 43.7 5.9 55 260-321 43-100 (243)
177 2nxc_A L11 mtase, ribosomal pr 83.0 0.88 3E-05 46.5 4.3 43 260-309 120-162 (254)
178 3mb5_A SAM-dependent methyltra 82.9 1 3.5E-05 45.5 4.7 56 260-321 93-156 (255)
179 3g5t_A Trans-aconitate 3-methy 82.9 0.98 3.3E-05 47.0 4.7 57 260-321 36-100 (299)
180 3jwg_A HEN1, methyltransferase 82.7 1.1 3.9E-05 43.9 4.9 44 260-310 29-74 (219)
181 2avd_A Catechol-O-methyltransf 82.6 1.4 4.7E-05 43.6 5.5 59 261-323 70-134 (229)
182 2pt6_A Spermidine synthase; tr 82.5 1.5 5.3E-05 46.6 6.1 57 261-323 117-183 (321)
183 1g8a_A Fibrillarin-like PRE-rR 82.4 0.94 3.2E-05 44.9 4.2 56 260-321 73-133 (227)
184 3thr_A Glycine N-methyltransfe 82.4 1.2 4E-05 46.0 5.0 43 260-309 57-99 (293)
185 3dr5_A Putative O-methyltransf 82.3 0.81 2.8E-05 45.9 3.6 58 261-322 57-121 (221)
186 3grz_A L11 mtase, ribosomal pr 82.2 1.4 4.7E-05 42.9 5.2 45 260-310 60-104 (205)
187 3hm2_A Precorrin-6Y C5,15-meth 82.2 1.1 3.8E-05 42.2 4.4 45 260-310 25-70 (178)
188 1o54_A SAM-dependent O-methylt 82.0 0.95 3.2E-05 46.6 4.1 55 261-321 113-175 (277)
189 1fbn_A MJ fibrillarin homologu 82.0 1.4 4.7E-05 44.0 5.2 55 260-319 74-131 (230)
190 3jwh_A HEN1; methyltransferase 81.9 1.3 4.4E-05 43.5 4.9 46 260-310 29-74 (217)
191 3g2m_A PCZA361.24; SAM-depende 81.6 0.64 2.2E-05 48.4 2.7 52 263-321 85-144 (299)
192 3dou_A Ribosomal RNA large sub 81.6 0.62 2.1E-05 45.6 2.4 49 260-321 25-73 (191)
193 3c3p_A Methyltransferase; NP_9 81.5 1.4 4.8E-05 43.1 5.0 58 261-322 57-120 (210)
194 3bwc_A Spermidine synthase; SA 81.4 1.9 6.4E-05 45.4 6.2 58 261-323 96-162 (304)
195 2avn_A Ubiquinone/menaquinone 81.1 1.3 4.5E-05 45.0 4.8 53 260-320 54-106 (260)
196 2gs9_A Hypothetical protein TT 81.1 1.2 4.2E-05 43.3 4.4 52 260-321 36-88 (211)
197 3kkz_A Uncharacterized protein 81.0 1 3.5E-05 45.9 4.0 56 260-321 46-107 (267)
198 4gek_A TRNA (CMO5U34)-methyltr 81.0 1.2 4.1E-05 45.9 4.5 59 260-321 70-134 (261)
199 1xxl_A YCGJ protein; structura 80.6 1.3 4.4E-05 44.4 4.5 56 259-321 20-80 (239)
200 3gjy_A Spermidine synthase; AP 80.6 1.9 6.5E-05 45.9 5.9 58 261-323 90-152 (317)
201 2ipx_A RRNA 2'-O-methyltransfe 80.4 1.2 4.2E-05 44.3 4.3 56 260-321 77-137 (233)
202 3fzg_A 16S rRNA methylase; met 80.2 1.9 6.6E-05 42.7 5.4 45 260-309 49-93 (200)
203 3uwp_A Histone-lysine N-methyl 80.1 1.5 5.3E-05 48.4 5.1 59 259-322 172-244 (438)
204 2pwy_A TRNA (adenine-N(1)-)-me 80.0 1.5 5.2E-05 44.1 4.8 56 260-321 96-159 (258)
205 3hem_A Cyclopropane-fatty-acyl 79.9 0.82 2.8E-05 47.7 2.8 56 260-321 72-133 (302)
206 2y1w_A Histone-arginine methyl 79.6 2.2 7.6E-05 45.7 6.2 35 260-300 50-84 (348)
207 2o07_A Spermidine synthase; st 79.6 2.2 7.7E-05 44.9 6.1 57 262-323 97-162 (304)
208 3u81_A Catechol O-methyltransf 79.3 1.9 6.5E-05 42.6 5.2 45 261-309 59-103 (221)
209 4azs_A Methyltransferase WBDD; 79.2 1.6 5.6E-05 50.2 5.2 58 259-323 65-127 (569)
210 2yvl_A TRMI protein, hypotheti 78.8 1.5 5E-05 43.9 4.2 42 261-309 92-133 (248)
211 2gpy_A O-methyltransferase; st 78.7 1.8 6.1E-05 43.1 4.8 56 261-322 55-117 (233)
212 2pbf_A Protein-L-isoaspartate 78.7 2.5 8.7E-05 41.7 5.9 43 260-308 80-128 (227)
213 1jsx_A Glucose-inhibited divis 78.7 1.7 5.9E-05 42.1 4.6 44 261-309 66-109 (207)
214 3dlc_A Putative S-adenosyl-L-m 78.7 1.4 4.6E-05 42.9 3.8 53 263-321 46-104 (219)
215 3adn_A Spermidine synthase; am 78.6 1.6 5.5E-05 45.8 4.6 57 261-322 84-150 (294)
216 1ri5_A MRNA capping enzyme; me 78.4 1.3 4.6E-05 45.4 3.9 45 260-311 64-109 (298)
217 1yub_A Ermam, rRNA methyltrans 78.2 0.14 4.7E-06 52.3 -3.8 55 260-321 29-86 (245)
218 3mq2_A 16S rRNA methyltransfer 78.0 0.78 2.7E-05 45.2 1.8 57 260-321 27-92 (218)
219 1i9g_A Hypothetical protein RV 77.9 2.2 7.5E-05 43.6 5.3 56 260-321 99-164 (280)
220 1qyr_A KSGA, high level kasuga 77.8 1.5 5.2E-05 45.0 4.0 54 261-321 22-78 (252)
221 1p91_A Ribosomal RNA large sub 77.8 2.2 7.6E-05 43.3 5.3 57 259-321 84-141 (269)
222 1nkv_A Hypothetical protein YJ 77.8 1.9 6.5E-05 43.3 4.7 56 260-321 36-97 (256)
223 1xj5_A Spermidine synthase 1; 77.7 2.9 9.8E-05 44.8 6.3 56 262-323 122-187 (334)
224 3kr9_A SAM-dependent methyltra 77.7 2.4 8.3E-05 42.8 5.4 44 261-309 16-59 (225)
225 3dh0_A SAM dependent methyltra 77.6 1.3 4.4E-05 43.4 3.3 56 260-321 37-99 (219)
226 3vc1_A Geranyl diphosphate 2-C 77.2 2.1 7E-05 44.9 5.0 44 260-309 117-160 (312)
227 1uir_A Polyamine aminopropyltr 77.1 3 0.0001 44.1 6.2 56 262-323 79-145 (314)
228 3f4k_A Putative methyltransfer 77.1 1.1 3.8E-05 45.1 2.7 55 260-320 46-106 (257)
229 3b3j_A Histone-arginine methyl 76.9 2.1 7.2E-05 48.3 5.2 41 261-308 159-199 (480)
230 3gnl_A Uncharacterized protein 76.7 2.7 9.1E-05 43.1 5.4 45 260-309 21-65 (244)
231 2ex4_A Adrenal gland protein A 76.2 2 6.7E-05 43.0 4.3 46 260-311 79-124 (241)
232 3lec_A NADB-rossmann superfami 76.1 2.9 9.9E-05 42.4 5.5 45 260-309 21-65 (230)
233 1kpg_A CFA synthase;, cyclopro 76.1 2.4 8.1E-05 43.6 5.0 56 260-321 64-125 (287)
234 1sui_A Caffeoyl-COA O-methyltr 76.0 2.1 7.2E-05 43.5 4.4 59 261-323 80-144 (247)
235 2b2y_A CHD-1, chromodomain-hel 76.0 1.1 3.9E-05 44.0 2.3 60 374-433 34-97 (187)
236 3mgg_A Methyltransferase; NYSG 75.7 2.4 8.1E-05 43.2 4.8 58 259-321 36-98 (276)
237 2i7c_A Spermidine synthase; tr 75.7 3.5 0.00012 42.8 6.1 56 262-323 80-145 (283)
238 1xtp_A LMAJ004091AAA; SGPP, st 75.5 2 6.7E-05 43.1 4.1 56 260-321 93-151 (254)
239 3r0q_C Probable protein argini 75.5 1.6 5.4E-05 47.5 3.5 56 260-322 63-124 (376)
240 2fk8_A Methoxy mycolic acid sy 75.2 2 7E-05 44.9 4.2 56 260-321 90-151 (318)
241 2fyt_A Protein arginine N-meth 74.9 1.6 5.6E-05 46.6 3.5 54 261-321 65-124 (340)
242 1dl5_A Protein-L-isoaspartate 74.7 2.5 8.5E-05 44.6 4.7 58 260-321 75-137 (317)
243 3ckk_A TRNA (guanine-N(7)-)-me 74.1 2.6 8.9E-05 42.5 4.5 57 260-321 46-113 (235)
244 3c3y_A Pfomt, O-methyltransfer 74.1 3.2 0.00011 41.7 5.2 59 261-323 71-135 (237)
245 1vl5_A Unknown conserved prote 74.0 2.5 8.5E-05 42.7 4.4 55 260-321 37-96 (260)
246 2hnk_A SAM-dependent O-methylt 73.9 2.7 9.3E-05 42.0 4.6 56 261-322 61-124 (239)
247 3cc8_A Putative methyltransfer 73.4 3.4 0.00012 40.3 5.1 53 260-321 32-84 (230)
248 3cbg_A O-methyltransferase; cy 73.4 3.7 0.00013 41.0 5.5 59 261-323 73-137 (232)
249 2b2c_A Spermidine synthase; be 72.7 4.5 0.00015 42.9 6.1 56 262-323 110-175 (314)
250 1i1n_A Protein-L-isoaspartate 72.7 3.5 0.00012 40.6 5.1 44 260-309 77-122 (226)
251 3fpf_A Mtnas, putative unchara 72.5 3.3 0.00011 43.7 4.9 57 260-321 122-183 (298)
252 3ocj_A Putative exported prote 72.5 2.4 8.2E-05 44.2 3.9 58 260-321 118-181 (305)
253 2p8j_A S-adenosylmethionine-de 72.0 3.2 0.00011 40.0 4.5 56 260-321 23-82 (209)
254 3r3h_A O-methyltransferase, SA 71.5 1.1 3.9E-05 45.4 1.1 59 261-323 61-125 (242)
255 2o57_A Putative sarcosine dime 71.2 2.9 0.0001 43.1 4.2 56 260-321 82-143 (297)
256 3q7e_A Protein arginine N-meth 70.7 2.7 9.3E-05 45.0 3.9 54 261-321 67-126 (349)
257 3gu3_A Methyltransferase; alph 70.5 2.5 8.4E-05 43.6 3.4 56 260-321 22-83 (284)
258 1r18_A Protein-L-isoaspartate( 70.3 2.6 9E-05 41.7 3.5 44 260-309 84-134 (227)
259 3ege_A Putative methyltransfer 70.0 1.8 6.2E-05 44.0 2.2 54 260-321 34-87 (261)
260 2yxe_A Protein-L-isoaspartate 69.2 4.5 0.00016 39.3 4.9 54 260-319 77-137 (215)
261 3id6_C Fibrillarin-like rRNA/T 68.7 5.9 0.0002 40.1 5.7 58 259-320 75-135 (232)
262 2h1e_A Chromo domain protein 1 68.6 1.7 5.7E-05 42.4 1.5 38 394-431 137-175 (177)
263 4hg2_A Methyltransferase type 68.4 1.5 5.2E-05 45.1 1.3 52 262-321 41-92 (257)
264 3g07_A 7SK snRNA methylphospha 68.2 4.3 0.00015 42.2 4.7 46 261-311 47-92 (292)
265 2b2y_A CHD-1, chromodomain-hel 67.5 1.8 6.2E-05 42.5 1.5 39 395-433 146-185 (187)
266 3bgv_A MRNA CAP guanine-N7 met 67.5 2.8 9.7E-05 43.8 3.2 44 260-309 34-77 (313)
267 3opn_A Putative hemolysin; str 66.5 2.3 7.7E-05 43.0 2.1 47 260-312 37-83 (232)
268 1wg8_A Predicted S-adenosylmet 66.4 9.9 0.00034 39.7 6.9 59 261-327 23-83 (285)
269 4hc4_A Protein arginine N-meth 65.8 4.5 0.00015 44.1 4.4 54 263-322 86-144 (376)
270 2b25_A Hypothetical protein; s 65.8 5.3 0.00018 42.3 4.9 43 261-309 106-150 (336)
271 1jg1_A PIMT;, protein-L-isoasp 65.6 4.7 0.00016 40.1 4.3 44 260-309 91-134 (235)
272 2pjd_A Ribosomal RNA small sub 64.7 4.5 0.00015 43.1 4.1 42 261-309 197-240 (343)
273 4fsd_A Arsenic methyltransfera 64.6 4.6 0.00016 43.7 4.2 56 260-321 83-153 (383)
274 1g6q_1 HnRNP arginine N-methyl 64.3 4.3 0.00015 43.1 3.8 54 261-321 39-98 (328)
275 1boo_A Protein (N-4 cytosine-s 64.0 5.9 0.0002 42.0 4.8 46 260-312 252-297 (323)
276 3lkd_A Type I restriction-modi 64.0 5.2 0.00018 45.8 4.7 47 260-308 221-267 (542)
277 1nt2_A Fibrillarin-like PRE-rR 63.3 6.5 0.00022 38.7 4.7 40 260-305 57-97 (210)
278 2vdw_A Vaccinia virus capping 63.3 7.2 0.00025 40.9 5.3 43 261-310 49-92 (302)
279 1u2z_A Histone-lysine N-methyl 63.2 6.9 0.00024 43.4 5.4 41 260-305 242-282 (433)
280 3bus_A REBM, methyltransferase 62.8 8.1 0.00028 39.0 5.5 44 260-309 61-104 (273)
281 3htx_A HEN1; HEN1, small RNA m 62.2 4.4 0.00015 48.6 3.7 55 260-321 721-789 (950)
282 3s1s_A Restriction endonucleas 59.4 6.2 0.00021 47.1 4.2 47 260-309 321-370 (878)
283 3lcv_B Sisomicin-gentamicin re 59.0 4.7 0.00016 41.9 2.8 44 261-309 133-176 (281)
284 2i62_A Nicotinamide N-methyltr 58.1 4.6 0.00016 40.5 2.6 46 260-311 56-101 (265)
285 2nyu_A Putative ribosomal RNA 57.9 5.6 0.00019 37.9 3.1 35 260-300 22-66 (196)
286 3mwy_W Chromo domain-containin 57.8 0.68 2.3E-05 55.6 -4.4 29 395-423 69-97 (800)
287 3p2e_A 16S rRNA methylase; met 57.5 4 0.00014 40.8 1.9 38 260-302 24-61 (225)
288 4df3_A Fibrillarin-like rRNA/T 56.7 13 0.00046 37.5 5.7 50 258-311 75-124 (233)
289 2bm8_A Cephalosporin hydroxyla 56.0 2.3 7.8E-05 42.9 -0.1 57 261-320 82-140 (236)
290 3fwz_A Inner membrane protein 55.7 12 0.00043 33.9 4.9 51 266-321 10-60 (140)
291 1i4w_A Mitochondrial replicati 54.5 12 0.00041 40.3 5.2 57 261-322 59-117 (353)
292 3v97_A Ribosomal RNA large sub 52.2 14 0.0005 43.4 5.9 50 260-309 190-276 (703)
293 2cmg_A Spermidine synthase; tr 51.9 7.1 0.00024 40.1 2.8 43 262-311 74-116 (262)
294 2plw_A Ribosomal RNA methyltra 51.7 6.7 0.00023 37.6 2.5 48 260-319 22-72 (201)
295 1eg2_A Modification methylase 50.6 11 0.00037 40.0 4.0 45 260-311 242-289 (319)
296 1vlm_A SAM-dependent methyltra 50.2 12 0.0004 36.6 4.0 48 261-321 48-95 (219)
297 3khk_A Type I restriction-modi 49.7 8.4 0.00029 44.0 3.2 46 263-309 247-303 (544)
298 2a14_A Indolethylamine N-methy 49.4 8.6 0.00029 39.0 3.0 43 260-308 55-97 (263)
299 2h1e_A Chromo domain protein 1 48.6 4.7 0.00016 39.2 0.8 37 397-433 46-84 (177)
300 3llv_A Exopolyphosphatase-rela 45.4 21 0.00073 32.0 4.8 50 267-321 10-59 (141)
301 1ej0_A FTSJ; methyltransferase 43.6 12 0.0004 34.3 2.7 36 260-302 22-59 (180)
302 2oxt_A Nucleoside-2'-O-methylt 42.8 9.7 0.00033 39.2 2.1 33 260-300 74-106 (265)
303 3frh_A 16S rRNA methylase; met 42.7 20 0.0007 36.6 4.4 42 260-309 105-146 (253)
304 3ua3_A Protein arginine N-meth 41.8 27 0.00093 41.0 5.8 60 261-322 410-484 (745)
305 3hp7_A Hemolysin, putative; st 41.0 12 0.00042 39.1 2.6 46 260-311 85-130 (291)
306 2wa2_A Non-structural protein 40.9 11 0.00037 39.1 2.1 32 260-299 82-113 (276)
307 4e2x_A TCAB9; kijanose, tetron 39.9 22 0.00077 38.4 4.6 42 260-308 107-148 (416)
308 3orh_A Guanidinoacetate N-meth 39.1 24 0.00082 35.1 4.3 45 260-310 60-104 (236)
309 1af7_A Chemotaxis receptor met 38.7 25 0.00086 36.3 4.5 46 260-309 105-157 (274)
310 2k4m_A TR8_protein, UPF0146 pr 37.5 12 0.00041 35.4 1.6 37 261-303 36-73 (153)
311 3zzs_A Transcription attenuati 35.2 81 0.0028 24.9 5.6 48 150-198 13-60 (65)
312 3c85_A Putative glutathione-re 34.6 34 0.0012 32.3 4.4 49 267-320 43-92 (183)
313 2g72_A Phenylethanolamine N-me 33.9 25 0.00085 35.9 3.6 45 260-310 71-115 (289)
314 3bkx_A SAM-dependent methyltra 32.8 23 0.00079 35.6 3.0 44 260-309 43-94 (275)
315 2p41_A Type II methyltransfera 32.7 23 0.00078 37.1 3.1 31 259-297 81-111 (305)
316 3ufb_A Type I restriction-modi 30.4 54 0.0018 37.1 5.8 47 262-308 219-273 (530)
317 1lss_A TRK system potassium up 30.1 57 0.002 28.6 5.0 49 267-319 8-56 (140)
318 3l4b_C TRKA K+ channel protien 29.6 52 0.0018 32.0 4.9 52 267-322 4-55 (218)
319 2qe6_A Uncharacterized protein 29.1 40 0.0014 34.5 4.1 56 262-322 79-140 (274)
320 1qzz_A RDMB, aclacinomycin-10- 28.8 55 0.0019 34.6 5.3 44 260-309 182-225 (374)
321 3zte_A Tryptophan operon RNA-b 28.7 1.1E+02 0.0038 25.0 5.6 49 150-199 21-69 (78)
322 2r3s_A Uncharacterized protein 27.7 42 0.0014 34.8 4.1 44 260-309 165-208 (335)
323 1uwk_A Urocanate hydratase; hy 26.1 1.6E+02 0.0056 32.8 8.3 60 264-328 168-228 (557)
324 1x87_A Urocanase protein; stru 25.6 1.7E+02 0.0059 32.6 8.3 60 264-328 163-223 (551)
325 1x19_A CRTF-related protein; m 25.3 53 0.0018 34.7 4.4 43 260-308 190-232 (359)
326 2fkn_A Urocanate hydratase; ro 25.3 1.7E+02 0.0058 32.7 8.2 60 264-328 164-224 (552)
327 4hcz_A PHD finger protein 1; p 23.7 62 0.0021 25.3 3.2 27 115-142 3-29 (58)
328 2dpm_A M.dpnii 1, protein (ade 23.4 91 0.0031 32.2 5.6 37 262-307 37-73 (284)
329 2l8d_A Lamin-B receptor; DNA b 22.9 63 0.0021 25.9 3.1 28 114-141 8-35 (66)
330 1gtf_A Trp RNA-binding attenua 22.8 1.8E+02 0.0063 23.3 5.8 49 150-199 17-65 (74)
331 2eqj_A Metal-response element- 22.1 98 0.0033 24.9 4.1 28 115-143 13-40 (66)
332 2aot_A HMT, histamine N-methyl 21.9 90 0.0031 31.7 5.3 50 259-309 51-102 (292)
333 1id1_A Putative potassium chan 21.9 85 0.0029 28.5 4.6 51 268-321 8-60 (153)
334 1tw3_A COMT, carminomycin 4-O- 21.8 65 0.0022 33.8 4.2 44 260-309 183-226 (360)
335 3llr_A DNA (cytosine-5)-methyl 21.6 46 0.0016 31.4 2.6 29 112-141 13-41 (154)
336 4gqb_A Protein arginine N-meth 21.6 98 0.0033 35.9 5.9 47 260-307 357-403 (637)
337 3sso_A Methyltransferase; macr 20.9 32 0.0011 37.9 1.5 53 261-322 217-276 (419)
338 2dig_A Lamin-B receptor; tudor 20.9 75 0.0026 25.5 3.2 28 114-141 11-38 (68)
339 3tka_A Ribosomal RNA small sub 20.6 97 0.0033 33.1 5.1 43 260-306 57-99 (347)
340 3ic5_A Putative saccharopine d 20.0 96 0.0033 26.1 4.3 46 269-319 11-57 (118)
341 2lci_A Protein OR36; structura 20.0 1.6E+02 0.0056 25.1 5.3 47 476-528 61-107 (134)
No 1
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=100.00 E-value=8.1e-112 Score=1024.52 Aligned_cols=698 Identities=58% Similarity=1.024 Sum_probs=568.1
Q ss_pred CCCceEcCCCcchhhhhccCccchhch-----hhHHHhhcccceeeEEEECCEEEeeCCEEEEeeCCCCccEEEEEeEEe
Q 003974 67 DSDLFFVSPPVSADEALKRYPDRYKAL-----NEEEEVLQARCHYTQASVDGCLYNLGDDAYVKAEEGAVDYIARIVELF 141 (782)
Q Consensus 67 ~~~~~w~G~p~~~~~~~~~w~~ry~~~-----~~~~~~~~~r~~Y~~~~v~G~~y~vGD~V~v~~~~~~~~~Ia~I~~m~ 141 (782)
..+.+|+|+|++..+++.+||+||... .+++++++.||||+++.++|+.|+|||||||+++++.++|||+|.+||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~v~~~~~~~~~i~~i~~~~ 83 (784)
T 4ft4_B 4 DHEPEFIGSPVAADEARSNWPKRYGRSTAAKKPDEEEELKARCHYRSAKVDNVVYCLGDDVYVKAGENEADYIGRITEFF 83 (784)
T ss_dssp -CCCEECSSCCCHHHHHHHCGGGCC------------CCCEEEECSEEEETTEEEETTCEEEECCSTTSCCEEEEEEEEE
T ss_pred CCCccccCCcCChHHHhhcCcccccccccCCCccchhccccceeeeeeeECCEEEeCCCeEEEeCCCCCCCEEEEEEEEE
Confidence 457899999999999999999999983 355567889999999999999999999999999878899999999999
Q ss_pred ecCCCceEEEEEEEEecccccccc------ccccCCCCeEEEeCCcCCccccccceeeEEEeeCCcchhhhhhcCCCCCc
Q 003974 142 ESVDGEPYFKARWFYRAEDTVIKD------LACLVDRKRVFLSDVEDDNPLNCIVSKAKIAEVATNMDLEAKQKNIPPCD 215 (782)
Q Consensus 142 e~~~g~~~v~v~WfyRp~dtv~~~------~~~~~~~rELFlS~~~d~~~~~~I~gkc~V~~~~~~~~~~~~~~~~~~~~ 215 (782)
++.+|..+|+||||||++||+++. ....+|+||||+|+++++|+++||.|||+|++.++..+.+...+..+.|+
T Consensus 84 ~~~~~~~~~~~~~~~r~~d~~~~~~~~~~~~~~~~d~~~~~~s~~~~~~~~~~i~~k~~v~~~~~~~~~~~~~~~~~~~~ 163 (784)
T 4ft4_B 84 EGTDQCHYFTCRWFFRAEDTVINSLVSISVDGHKHDPRRVFLSEEKNDNVLDCIISKVKIVHVDPNMDPKAKAQLIESCD 163 (784)
T ss_dssp EETTSCEEEEEEEEEEGGGSTTGGGGGCCBTTBCCCTTBEEEEEEEEEEEGGGEEEECCEEECCTTSCHHHHHHHHHHCS
T ss_pred EcCCCCEEEEEEEeeChhhhcccccccccccccccccceEEEeCcEEEechHHeeeeEEEEeeCccccchhhhhccCCcc
Confidence 999999999999999999998654 34567999999999999999999999999999998877777667778999
Q ss_pred eeeeccccCCCceeeecCCcCCCCCCCCCCccccCC---CCCCCCCCCCcceeccccccchhHHHHHHhhhhcCCceeeE
Q 003974 216 LYYDMKYTLPHLTFLNINNESNRRDSDASSTISSET---GSNSPIGQPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTR 292 (782)
Q Consensus 216 ffy~~~Y~~~~~~F~~lp~e~~~~~s~~~~~~~~~~---~~~~~~~~~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~ 292 (782)
|||++.|...+.+|..++.+....++...+...++. +....+.+++|++|||||||||||+||+++...+|..+.++
T Consensus 164 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv 243 (784)
T 4ft4_B 164 LYYDMSYSVAYSTFANISSENGQSGSDTASGISSDDVDLETSSSMPTRTATLLDLYSGCGGMSTGLCLGAALSGLKLETR 243 (784)
T ss_dssp EEESEEEETGGGEEEEC-----------------------------CEEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEE
T ss_pred eEeccccCccccCccCCCcccccccccccccccccccccccccccCCCCCeEEEeCcCccHHHHHHHHhCcccCCceeEE
Confidence 999999999999999999887766654444333322 12223677899999999999999999976555555555677
Q ss_pred EEEecCHHHHHHHHHhCCCCcccccchHHHHHHHHHHHHHhhhhcccCCCCCcccccccCchhhhhhhhhhhcccCCCCC
Q 003974 293 WAIDINPHACKSLKFNHPETKVRNEAADDFLSLLKEWAKLCQYFSIYDTDKVPEQSLNFMSEEEEEEEEEEEENDDDANV 372 (782)
Q Consensus 293 ~ave~~~~a~~t~~~N~p~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (782)
||||+|+.|++||++|||++.++++|+.+|+..+.+|..+|..+....... .......+ ......
T Consensus 244 ~AvE~d~~A~~Ty~~Nhp~~~~~~~di~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~------------~~~~~~ 308 (784)
T 4ft4_B 244 WAVDFNSFACQSLKYNHPQTEVRNEKADEFLALLKEWAVLCKKYVQDVDSN---LASSEDQA------------DEDSPL 308 (784)
T ss_dssp EEEESCHHHHHHHHHHCTTSEEEESCHHHHHHHHHHHHHHHHHTC-----------------------------------
T ss_pred EEEeCCHHHHHHHHHHCCCCceecCcHHHhhhhhhhccccccccccccccc---cccccccc------------cccccc
Confidence 999999999999999999999999999999999999999988875311100 00000000 001111
Q ss_pred CchhHHHHHHHHHhcCCCCCCCCCcceeEEeeccCCCCCCCcccccccchhhhhhHHhHhccccccCCCCCCCccEEEec
Q 003974 373 PNEEFEVERLIAVCYGDPNKTKKPGVYFKVRWKGYGPSEDTWEPIKGLSKCKEKLKEFVTKGYRSNILPLPGDVDFICGG 452 (782)
Q Consensus 373 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~vDvl~gg 452 (782)
..+++..+++.+++.+.+. ...++.+++.|.++....++|+++..+.++.+.|.+++..+....++|.+|+||||+||
T Consensus 309 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~~~~~~~~~~~~~G~VDvl~GG 386 (784)
T 4ft4_B 309 DKDEFVVEKLVGICYGGSD--RENGIYFKVQWEGYGPEEDTWEPIDNLSDCPQKIREFVQEGHKRKILPLPGDVDVICGG 386 (784)
T ss_dssp ---CCCEEEEEEEEESCSS--SCSSEEEEEEETTCCTTSCEEEESGGGTTCHHHHHHHHHHHHHHTSSCCTTSCSEEEEC
T ss_pred ccccchhhhhccccccccc--ccccccchhhhcccccccccccccccccccchhccccccccchhhccCCCCCeEEEEec
Confidence 2223333445556666654 46789999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhcccCcCCCCCccccccccchHHHHHHHHHHhCCcEEEeccccccccccccchHHHHHHHHhcCCcceEEEEEec
Q 003974 453 PPCQGVSGFNRFRNPQAALEDIKNRQLLVFMDVIEYLKPKYVLMENVVDILKFSGGFLARYAVGRLVSMDYQTRLGIMAA 532 (782)
Q Consensus 453 pPCQ~fS~ag~~~~~~~~~~d~r~~L~~~~~~ii~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~ilnA 532 (782)
||||+||.||++++...+.+|+||.||++|+++|+.++|++||||||+||+++.++..++.++..|..+||++.+.+|||
T Consensus 387 pPCQ~FS~aG~~kg~~~~~~D~R~~L~~~~~riv~~~rPk~fvlENV~glls~~~g~~~~~il~~l~~lGY~v~~~vLnA 466 (784)
T 4ft4_B 387 PPCQGISGFNRYRNRDEPLKDEKNKQMVTFMDIVAYLKPKYVLMENVVDILKFADGYLGKYALSCLVAMKYQARLGMMVA 466 (784)
T ss_dssp CCCCSSSGGGGGSCTTSTTTSTTCHHHHHHHHHHHHHCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTCEEEEEEEEG
T ss_pred CCCcchhhhhcccCcCccccCchhHHHHHHHHHHHHHCCCEEEEEecCCccccccchHHHHHHHHHHhCCCeeeeeecCH
Confidence 99999999999887767789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccccEEEEEEecCCCCCCCCCCCccccccccCCCchhHHHHHhhcCCCCccccCcccHHhhhccCCCCCCCCCc
Q 003974 533 GSYGLPQFRLRVFLWGARPFKKLPQYPLPTHEIVARGVIPNEFQEIIVAYANNQPCQLEKGVLLSDAISDLPLVTNNESE 612 (782)
Q Consensus 533 ~~yGvPQ~R~R~flig~~~~~~~p~~P~pth~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~tv~dAI~dLp~~~~~~~~ 612 (782)
++|||||+|+|+||||++++..+|.+|.|||....+...+..+......+.......+.+.+|+++||+|||.+.++...
T Consensus 467 ~dyGVPQ~R~Rvfivg~r~d~~~~~~P~pth~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~dai~dlp~~~~~~~~ 546 (784)
T 4ft4_B 467 GCYGLPQFRMRVFLWGALSSMVLPKYPLPTYDVVVRGGAPNAFSQCMVAYDETQKPSLKKALLLGDAISDLPKVQNHQPN 546 (784)
T ss_dssp GGGTCSSCCEEEEEEEECTTSCCCCEECCSBCCCCCSCSCGGGTTCBCSCCTTCCCCCBCCCCHHHHHTTSCCCCSCCCC
T ss_pred HHcCCCcccccceeeeeccCCCcccCCCcccccccccccccccccccccccccccccccccccHHHHhhcccccccCCCc
Confidence 99999999999999999999999999999998766655555444433333334445667889999999999999998888
Q ss_pred cccccCCccchHHHHHHHhhcccccccccccc-cCCCCccCCCCccCCCHHHHHHHccCcccCCCCccCCCCCccCCCCC
Q 003974 613 DERKYGTVARTEFQKYIRLRRHDVVNLSSAQM-ASRPSLLYDHRPFQVNNDDYERVCCIPKRKGANFRDLPGVLVGPDNK 691 (782)
Q Consensus 613 ~~~~y~~~p~t~~~~~~r~~~~~~~~~~~~~~-~~~~~~l~~H~~~~~~~~~~~ri~~ip~~~G~~~rdlp~~~~~~~~~ 691 (782)
..+.|...+.+.|+++++...........+.. ......+.+|.+..++...++++..||...|.+|++++.........
T Consensus 547 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~r~~~i~~~~g~~~~dl~~~~~~~~~~ 626 (784)
T 4ft4_B 547 DVMEYGGSPKTEFQRYIRLSRKDMLDWSFGEGAGPDEGKLLDHQPLRLNNDDYERVQQIPVKKGANFRDLKGVRVGANNI 626 (784)
T ss_dssp SEECCSSCCCSHHHHHHTCCTTTTTCCTTCSSCCSSTTCEECCCCCCCCHHHHHHHHHSCSSTTCCGGGSTTEEECGGGC
T ss_pred cccccCCCCccHHHHHHhhcccccccccccccccccccccccccccccCHHHHHHHHhcccccCCccccccccccccccc
Confidence 88899999999999999976655443333221 13345688999999999999999999999999999999877655555
Q ss_pred cccCcchhhhhhcCCCCCCcccccccccCCCCCCeeeccCCCcccceecccCCCCCcccCCCCCccCcHHHHHHhcCCCC
Q 003974 692 VRWDPSMERVMLKSGKPLVPDYAMKFEHQSSTKPFGRLWWDEIVNTVVTRAQPHNRILLHPSQDRVLTIRENARLQGFPD 771 (782)
Q Consensus 692 ~~~~~~~~~~~l~~gk~l~p~~~~~~~~~~~~~~y~Rl~wd~p~pTItt~~~~~~~~~iHP~q~R~LTVREaARLQgFPD 771 (782)
..+.+...+..+.+|+.+.+.....+..+.+.+.|+||.||+|++||||++.++++.++||.|+|.||||||||||||||
T Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~rl~~d~ps~TItt~~~~~~~~~iHp~~~R~LTpRE~ARLQgFPD 706 (784)
T 4ft4_B 627 VEWDPEIERVKLSSGKPLVPDYAMSFIKGKSLKPFGRLWWDETVPTVVTRAEPHNQVIIHPTQARVLTIRENARLQGFPD 706 (784)
T ss_dssp EEECTTSCCCBCTTSSBSSCHHHHHGGGGTCCCTTEECCTTCCCSCCCSCCCSSSSEEECSSSSSBCCHHHHHHHTTCCT
T ss_pred ccccchhhhcccccCcccccccccccccCCcCccceeccCCCcccceeccccCCCCeecCCCCCcCCcHHHHHHHCCCCC
Confidence 55666666677788888888888777888899999999999999999999998889999999999999999999999999
Q ss_pred CcEEcCCCCC
Q 003974 772 CYQLFGPVKE 781 (782)
Q Consensus 772 ~y~F~Gs~~~ 781 (782)
+|.|.|+.++
T Consensus 707 ~y~f~Gs~~~ 716 (784)
T 4ft4_B 707 YYRLFGPIKE 716 (784)
T ss_dssp TCCCCSCHHH
T ss_pred CCEeCCCHHH
Confidence 9999998653
No 2
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=100.00 E-value=3.1e-100 Score=922.15 Aligned_cols=611 Identities=30% Similarity=0.526 Sum_probs=460.3
Q ss_pred chhhhchhhhHHhhhhhhhhhcccccccCCchhhhhhhc--ccccCCCCCCCceEcCCCcchhhhhccCccchhchhhHH
Q 003974 20 SKARRRKLNLAEQQHQQQEEQREDEEVKEEPVELVTRVK--KKTQKNKPDSDLFFVSPPVSADEALKRYPDRYKALNEEE 97 (782)
Q Consensus 20 ~~~~~r~~~~a~~~~~~~ee~~e~e~~~e~~~~~~~~~k--~~~k~~~~~~~~~w~G~p~~~~~~~~~w~~ry~~~~~~~ 97 (782)
+.+.|||+|+|.+++++ ||+++|+.++++..++ .++++++.+.+++|+|+|+...
T Consensus 87 ~c~~r~c~~~~~~e~~d------~~~~eee~~~~~~~~~~~~~~~k~~~~~~~~W~G~p~k~~----------------- 143 (1002)
T 3swr_A 87 ACQERRCPNMAMKEADD------DEEVDDNIPEMPSPKKMHQGKKKKQNKNRISWVGEAVKTD----------------- 143 (1002)
T ss_dssp CCGGGCCTTCBCCCSCC------CTTCTTSSCCCCCCCCTTCSCBCCCCCSCEEEESCCCCCB-----------------
T ss_pred HHHhccCcccccCcccc------cccccccccccccchhhhhccccccccccccccCcccccc-----------------
Confidence 34788999999998833 2222222222222222 3344567788999999999444
Q ss_pred HhhcccceeeEEEECCEEEeeCCEEEEeeCC-CCccEEEEEeEEeecCCCceEEEEEEEEeccccccccccccCCCCeEE
Q 003974 98 EVLQARCHYTQASVDGCLYNLGDDAYVKAEE-GAVDYIARIVELFESVDGEPYFKARWFYRAEDTVIKDLACLVDRKRVF 176 (782)
Q Consensus 98 ~~~~~r~~Y~~~~v~G~~y~vGD~V~v~~~~-~~~~~Ia~I~~m~e~~~g~~~v~v~WfyRp~dtv~~~~~~~~~~rELF 176 (782)
.++.||+++.++|++|+|||||||++++ +.++|||+|++||++.+|.+||||+|||||+||++|. .++++|||
T Consensus 144 ---~~~~~Y~s~~v~g~~i~VGD~V~v~~~d~~~ppyIarIe~m~ed~~g~k~~~v~Wf~rp~ET~lg~---~~~~~ElF 217 (1002)
T 3swr_A 144 ---GKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQMFHAHWFCAGTDTVLGA---TSDPLELF 217 (1002)
T ss_dssp ---TTEEECSEEEETTEEEETTCEEEECBSSTTSCCEEEEEEEEEEETTTEEEEEEEEEEEGGGSTTGG---GSCTTEEE
T ss_pred ---cCceeeeEEEECCEEEecCCEEEEecCCCCCCceEEEEEEEeecCCCCeEEEEEEEecchhccccc---CCCCCceE
Confidence 4688999999999999999999999986 6778999999999999999999999999999999887 69999999
Q ss_pred EeCCcCCccccccceeeEEEeeCCcch--------hhhhhcCCCCCceeeeccccCCCceeeecCCcCCCC---------
Q 003974 177 LSDVEDDNPLNCIVSKAKIAEVATNMD--------LEAKQKNIPPCDLYYDMKYTLPHLTFLNINNESNRR--------- 239 (782)
Q Consensus 177 lS~~~d~~~~~~I~gkc~V~~~~~~~~--------~~~~~~~~~~~~ffy~~~Y~~~~~~F~~lp~e~~~~--------- 239 (782)
+|++|+++++++|+|||+|+++++..+ .+.......+++|||++.|++++++|++||.+.++.
T Consensus 218 lsd~cd~~~l~~I~gkc~V~~~~~~~~w~~~~~~~~~~~~~~~~~~~ffc~~~Y~~~~~~F~~lp~~~~~~~~~~~~c~~ 297 (1002)
T 3swr_A 218 LVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMDPESLLEGDDGKTYFYQLWYDQDYARFESPPKTQPTEDNKFKFCVS 297 (1002)
T ss_dssp EEEEEEEEEGGGEEEEECEEECCCCTTGGGCTTCCCCCSCCCCCCTSEEEEEEEETTTTEEECCCCCCCCTTCTTTCCHH
T ss_pred eeccccCCcHHHhceeeEEEEccCCcchhhhcccccccccccCCCCeEEEEEEECCCCCcccCCChhhcccccCCCcCcc
Confidence 999999999999999999999876211 111222234789999999999999999999643310
Q ss_pred ----------------------------------------C------C--CC----------------------------
Q 003974 240 ----------------------------------------D------S--DA---------------------------- 243 (782)
Q Consensus 240 ----------------------------------------~------s--~~---------------------------- 243 (782)
| . ..
T Consensus 298 c~~~e~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~y~vgD~Vyl~p~~~~f~~~~~~~~~~~~~~~vd~~~ype~yrk 377 (1002)
T 3swr_A 298 CARLAEMRQKEIPRVLEQLEDLDSRVLYYSATKNGILYRVGDGVYLPPEAFTFNIKLSSPVKRPRKEPVDEDLYPEHYRK 377 (1002)
T ss_dssp HHHHHHHHHHTSCEECSEEEECSSCEEESEEEETTEEEETTCEEEECTTSCCCSSCCCCCCCCSCSCCCCTTTCTTSGGG
T ss_pred cccchhhhhcccCcccccccccCCcEEEEEEEECCEEEecCCEEEECCcccccccccccccccccccccccccchhhhhc
Confidence 0 0 00
Q ss_pred ------------CC--------cc------------------------------------ccC-----------------
Q 003974 244 ------------SS--------TI------------------------------------SSE----------------- 250 (782)
Q Consensus 244 ------------~~--------~~------------------------------------~~~----------------- 250 (782)
.. .+ .++
T Consensus 378 ~~~~~kg~n~~~~~P~~IgrI~~i~~~~~~~~~~~~~~~~v~v~~fyRPed~~~~~~~~~~~D~~elf~S~~~~~~~~~~ 457 (1002)
T 3swr_A 378 YSDYIKGSNLDAPEPYRIGRIKEIFCPKKSNGRPNETDIKIRVNKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKA 457 (1002)
T ss_dssp HHHHHTCCCCCCCCCCEEEEEEEEEECCCSSSSCCSSCCEEEEEECBCGGGSTTCGGGGSSSCTTEEEECCCEEEEEGGG
T ss_pred cchhccccccCCCCCceeeEEeEEEecCCccccCCCccEEEEEEEEECcccccccccccccCCcceEEEecceeccCHHH
Confidence 00 00 000
Q ss_pred -------------C--------CC-------------------------C-----------------------C---CCC
Q 003974 251 -------------T--------GS-------------------------N-----------------------S---PIG 258 (782)
Q Consensus 251 -------------~--------~~-------------------------~-----------------------~---~~~ 258 (782)
. .. . . ..+
T Consensus 458 i~GkC~V~~~~d~~~~~~~~~~~~p~~fyf~~~Yd~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (1002)
T 3swr_A 458 VQGRCTVEYGEDLPECVQVYSMGGPNRFYFLEAYNAKSKSFEDPPNHARSPGNKGKGKGKGKGKPKSQACEPSEPEIEIK 537 (1002)
T ss_dssp CCEEEEEEEGGGCSSCHHHHHHTSSSEEEEEEEEETTTTEEECCCSTTSCC----------------------CCCCCCC
T ss_pred cceEEEEEEeccccccchhhccCCCCeEEEEEEEeCCCCeeecCcccccccccccccccccccccccccccccccccccc
Confidence 0 00 0 0 023
Q ss_pred CCCcceeccccccchhHHHHHHhhhhcCC-ceeeEEEEecCHHHHHHHHHhCCCCcccccchHHHHHHHHHHHHHhhhhc
Q 003974 259 QPEMSLLDLYSGCGAMSTGLCIGASLSGV-KLVTRWAIDINPHACKSLKFNHPETKVRNEAADDFLSLLKEWAKLCQYFS 337 (782)
Q Consensus 259 ~~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~-~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~~~~~~~~~~~~~~~~~ 337 (782)
+.+|++||||||||||++|| ++||+ + ++||||+|+.|++||++|||++.++++||.+++..+..
T Consensus 538 ~~~l~~iDLFaG~GGlslGl----~~AG~~~--vv~avEid~~A~~ty~~N~p~~~~~~~DI~~l~~~~~~--------- 602 (1002)
T 3swr_A 538 LPKLRTLDVFSGCGGLSEGF----HQAGISD--TLWAIEMWDPAAQAFRLNNPGSTVFTEDCNILLKLVMA--------- 602 (1002)
T ss_dssp CCCEEEEEESCTTSHHHHHH----HHHTSEE--EEEEECSSHHHHHHHHHHCTTSEEECSCHHHHHHHHHH---------
T ss_pred CCCCeEEEeccCccHHHHHH----HHCCCCc--eEEEEECCHHHHHHHHHhCCCCccccccHHHHhhhccc---------
Confidence 56789999999999999999 68998 5 45999999999999999999999999999887421100
Q ss_pred ccCCCCCcccccccCchhhhhhhhhhhcccCCCCCCchhHHHHHHHHHhcCCCCCCCCCcceeEEeeccCCCCCCCcccc
Q 003974 338 IYDTDKVPEQSLNFMSEEEEEEEEEEEENDDDANVPNEEFEVERLIAVCYGDPNKTKKPGVYFKVRWKGYGPSEDTWEPI 417 (782)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 417 (782)
|++...
T Consensus 603 --------------------------------------------------~di~~~------------------------ 608 (1002)
T 3swr_A 603 --------------------------------------------------GETTNS------------------------ 608 (1002)
T ss_dssp --------------------------------------------------TCSBCT------------------------
T ss_pred --------------------------------------------------hhhhhh------------------------
Confidence 111000
Q ss_pred cccchhhhhhHHhHhccccccCCCCCCCccEEEecCCchhhcccCcCCCCCccccccccchHHHHHHHHHHhCCcEEEec
Q 003974 418 KGLSKCKEKLKEFVTKGYRSNILPLPGDVDFICGGPPCQGVSGFNRFRNPQAALEDIKNRQLLVFMDVIEYLKPKYVLME 497 (782)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~vDvl~ggpPCQ~fS~ag~~~~~~~~~~d~r~~L~~~~~~ii~~~~P~~~v~E 497 (782)
....+|.++++|||+||||||+||.+|+.+ ....+|+|+.|+.+|+++|+.++|++||||
T Consensus 609 ------------------~~~~lp~~~~vDll~GGpPCQ~FS~ag~~~--~~~~~d~R~~L~~~~~riv~~~rPk~~llE 668 (1002)
T 3swr_A 609 ------------------RGQRLPQKGDVEMLCGGPPCQGFSGMNRFN--SRTYSKFKNSLVVSFLSYCDYYRPRFFLLE 668 (1002)
T ss_dssp ------------------TCCBCCCTTTCSEEEECCCCTTCCSSSCCC--HHHHHHHTTSHHHHHHHHHHHHCCSEEEEE
T ss_pred ------------------hhhhcccCCCeeEEEEcCCCcchhhhCCCC--CCcccchhhHHHHHHHHHHHHhCCCEEEEe
Confidence 001245567999999999999999998642 234578999999999999999999999999
Q ss_pred cccccccccccchHHHHHHHHhcCCcceEEEEEecccCCCCccccEEEEEEecCCCCCCCCCCCccccccccC-CCchhH
Q 003974 498 NVVDILKFSGGFLARYAVGRLVSMDYQTRLGIMAAGSYGLPQFRLRVFLWGARPFKKLPQYPLPTHEIVARGV-IPNEFQ 576 (782)
Q Consensus 498 NV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~ilnA~~yGvPQ~R~R~flig~~~~~~~p~~P~pth~~~~~~~-~p~~~~ 576 (782)
||+||+++.++..+..++..|.++||++.+.+|||++|||||+|+|+||||++.+..+|.||.|||.+..+.. +.....
T Consensus 669 NV~glls~~~~~~~~~i~~~L~~lGY~v~~~vLnA~dyGvPQ~R~R~fiva~r~g~~~p~~P~pth~~~~~~~~l~~~~~ 748 (1002)
T 3swr_A 669 NVRNFVSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVD 748 (1002)
T ss_dssp EEGGGGTTGGGHHHHHHHHHHHHHTCEEEEEEEEGGGGTCSBCCEEEEEEEECTTSCCCCCCCCCBCCCGGGCCCCEEET
T ss_pred ccHHHhccCcchHHHHHHHHHHhcCCeEEEEEEEHHHCCCCccceEEEEEEEeCCCCCCCCCCccccccccccccccccc
Confidence 9999999988899999999999999999999999999999999999999999999999999999997543211 100000
Q ss_pred HH-HHhhcCCCCccccCcccHHhhhccCCCCCCCCCccccccCCccchHHHHHHHhhcccccccccccccCCCCccCCCC
Q 003974 577 EI-IVAYANNQPCQLEKGVLLSDAISDLPLVTNNESEDERKYGTVARTEFQKYIRLRRHDVVNLSSAQMASRPSLLYDHR 655 (782)
Q Consensus 577 ~~-~~~~~~~~~~~~~~~~tv~dAI~dLp~~~~~~~~~~~~y~~~p~t~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~H~ 655 (782)
.. .+.........+.+++||+|||+|||.+.+++....++|...|+++||++||.... ...+++|.
T Consensus 749 ~~~~~~~~~~~~~~p~~~vTV~DAIsDLP~i~~g~~~~~~~y~~~p~s~yq~~mR~~~~-------------~~~l~~H~ 815 (1002)
T 3swr_A 749 DKKFVSNITRLSSGPFRTITVRDTMSDLPEVRNGASALEISYNGEPQSWFQRQLRGAQY-------------QPILRDHI 815 (1002)
T ss_dssp TEEECCSCCCSSCCSBCCCCHHHHHTTSCCCCTTCCCSEECCCSCCCSHHHHHHHTTCS-------------SCCEECCC
T ss_pred cccccccccccccCCcCCcCHHHHhhhCCccccCccccccccCCCCccHHHHHhhcccc-------------cccccCcc
Confidence 00 00000001123456799999999999999998888899999999999999997532 24578999
Q ss_pred ccCCCHHHHHHHccCcccCCCCccCCCCCccC-CCCCc----ccCcc-----------hhh-hh-hcCCCCC--------
Q 003974 656 PFQVNNDDYERVCCIPKRKGANFRDLPGVLVG-PDNKV----RWDPS-----------MER-VM-LKSGKPL-------- 709 (782)
Q Consensus 656 ~~~~~~~~~~ri~~ip~~~G~~~rdlp~~~~~-~~~~~----~~~~~-----------~~~-~~-l~~gk~l-------- 709 (782)
++.+++.+++||+.||..+|++|+|||+..+. .++.. ++... +.. .. ...|+++
T Consensus 816 ~~~~s~~~~~Ri~~IP~~~Gg~wrdlP~~~~~l~~~~~~~~l~~~~~~~~~g~~~~~~l~~~c~~~~~Gk~~~p~~~~~~ 895 (1002)
T 3swr_A 816 CKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTHHDRKNGRSSSGALRGVCSCVEAGKACDPAARQFN 895 (1002)
T ss_dssp CCCCCHHHHHHHHTSCCSTTCCGGGCCCCCEECTTSCEEBCCCCCBCCTTTCCCTTCCCCBCSGGGSSSCCCCGGGCCCS
T ss_pred cccCCHHHHHHHhcCCCCCCCChhhCchhhhccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999998889999999974321 11111 01100 000 00 1125543
Q ss_pred --Cccccccc--ccCCCCCCeeeccCCCcccceecccCC--CCCcccCCCCCccCcHHHHHHhcCCCCCcEEcCCCCC
Q 003974 710 --VPDYAMKF--EHQSSTKPFGRLWWDEIVNTVVTRAQP--HNRILLHPSQDRVLTIRENARLQGFPDCYQLFGPVKE 781 (782)
Q Consensus 710 --~p~~~~~~--~~~~~~~~y~Rl~wd~p~pTItt~~~~--~~~~~iHP~q~R~LTVREaARLQgFPD~y~F~Gs~~~ 781 (782)
+|++.... .++.+.+.||||+||+|++|++|.+.+ ..++++||.|+|.||||||||||||||+|.|.|+.++
T Consensus 896 ~l~p~~~~~~~~r~~~~~~~ygRL~wd~p~~~~it~~~~~~~~g~~~Hp~~~R~lt~rE~arlQ~fPd~~~f~g~~~~ 973 (1002)
T 3swr_A 896 TLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILD 973 (1002)
T ss_dssp BSSCTHHHHHGGGTGGGTTTTCBCCTTSCBSSCCSSCCTTCTTCCCBCSSSSSBCCHHHHHHHTTCCTTCCCCSSHHH
T ss_pred cccccccccccccccccCccceeeccCCCCCeeEecCCCCCCCCcccCcccccCCCHHHHHHhCCCCcceEEcCChHH
Confidence 44433221 235678999999999997777776553 3578999999999999999999999999999998653
No 3
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=100.00 E-value=4.2e-93 Score=877.04 Aligned_cols=609 Identities=29% Similarity=0.522 Sum_probs=445.7
Q ss_pred chhhhchhhhHHhhhhhhhhhcccccccCCchhhhhhhcccccCCCCCCCceEcCCCcchhhhhccCccchhchhhHHHh
Q 003974 20 SKARRRKLNLAEQQHQQQEEQREDEEVKEEPVELVTRVKKKTQKNKPDSDLFFVSPPVSADEALKRYPDRYKALNEEEEV 99 (782)
Q Consensus 20 ~~~~~r~~~~a~~~~~~~ee~~e~e~~~e~~~~~~~~~k~~~k~~~~~~~~~w~G~p~~~~~~~~~w~~ry~~~~~~~~~ 99 (782)
+-..|||+++|.+++++.||. ||++.++.. ..+..+++|++..+++++|.|+|+...
T Consensus 398 ~c~~r~c~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~i~W~G~p~k~~------------------- 454 (1330)
T 3av4_A 398 ACLKRRCPNLAVKEADDDEEA-DDDVSEMPS---PKKLHQGKKKKQNKDRISWLGQPMKIE------------------- 454 (1330)
T ss_dssp CCCCCCCHHHHHHHHHHTTCC-CC---CCCC---CCCTTCSCBCCCCCSCEEEESSCSCCC-------------------
T ss_pred hhHhhhcchhhcccccccccc-ccchhhccc---ccchhhhhhhhcccCCceEccCceecc-------------------
Confidence 346899999999988665552 222222211 111124555567889999999999555
Q ss_pred hcccceeeEEEECCEEEeeCCEEEEeeCC-CCccEEEEEeEEeecCCCceEEEEEEEEeccccccccccccCCCCeEEEe
Q 003974 100 LQARCHYTQASVDGCLYNLGDDAYVKAEE-GAVDYIARIVELFESVDGEPYFKARWFYRAEDTVIKDLACLVDRKRVFLS 178 (782)
Q Consensus 100 ~~~r~~Y~~~~v~G~~y~vGD~V~v~~~~-~~~~~Ia~I~~m~e~~~g~~~v~v~WfyRp~dtv~~~~~~~~~~rELFlS 178 (782)
.+++||+++.++|.+|+|||||||.+++ +.++|||+|++||++.+|.+||||+|||||+||+++. .++++|||+|
T Consensus 455 -~~~~~Y~~~~v~g~~~~vGD~V~v~~~d~~~p~yiarIe~iwe~~dg~~~~~~~WfyRp~ETvlg~---~~~~rElFlS 530 (1330)
T 3av4_A 455 -ENRTYYQKVSIDEEMLEVGDCVSVIPDDSSKPLYLARVTALWEDKNGQMMFHAHWFCAGTDTVLGA---TSDPLELFLV 530 (1330)
T ss_dssp ---CEEECSEEEESSEEETTCEEEECBCCSSCCCEEEEEEEEEEETTCCEEEEEEEEEEGGGSTTGG---GSCTTEEEEE
T ss_pred -CCceeeeEEEECCEEEecCCEEEEeCCCCCCCCEEEEEeeeeecCCCCEEEEEEEEEchHHccccc---ccCCCeEEEe
Confidence 4789999999999999999999999886 6788999999999999999999999999999999876 6999999999
Q ss_pred CCcCCccccccceeeEEEeeCCcch------hhhh---hcCCCCCceeeeccccCCCceeeecCCcC--CC---------
Q 003974 179 DVEDDNPLNCIVSKAKIAEVATNMD------LEAK---QKNIPPCDLYYDMKYTLPHLTFLNINNES--NR--------- 238 (782)
Q Consensus 179 ~~~d~~~~~~I~gkc~V~~~~~~~~------~~~~---~~~~~~~~ffy~~~Y~~~~~~F~~lp~e~--~~--------- 238 (782)
++||++++++|+|||.|+++++..+ ++.. ......++|||++.|++++++|.++|.+. ++
T Consensus 531 ~~~d~~~l~~I~gKC~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~C~~~Yd~~~~~F~~lp~~~~~~~~~~~~C~sC 610 (1330)
T 3av4_A 531 GECENMQLSYIHSKVKVIYKAPSENWAMEGGTDPETTLPGAEDGKTYFFQLWYNQEYARFESPPKTQPTEDNKHKFCLSC 610 (1330)
T ss_dssp EEEEEEEGGGEEEEECEEECCCCTTSTTCCC-------------CCEEEEEEEETTTTEEECCCCCCCCGGGSSSCCHHH
T ss_pred cccccCcHHHhcceeEEEEeccchhhhhhcccCccccccccccCCceEEEeEECCccCccCCcCcCCcccccCccccchh
Confidence 9999999999999999999876322 1111 11245678999999999999999999731 00
Q ss_pred --------------------------------C-----------------------------------------------
Q 003974 239 --------------------------------R----------------------------------------------- 239 (782)
Q Consensus 239 --------------------------------~----------------------------------------------- 239 (782)
.
T Consensus 611 ~~~e~~~~ke~~~v~~~~~~~~~~~~Y~~~~~~g~~Y~vgD~Vyl~p~~f~~~~~~~~~~~~~~~~~~~~~~ype~yrk~ 690 (1330)
T 3av4_A 611 IRLAELRQKEMPKVLEQIEEVDGRVYCSSITKNGVVYRLGDSVYLPPEAFTFNIKVASPVKRPKKDPVNETLYPEHYRKY 690 (1330)
T ss_dssp HHHHHHHHHHSCEEEEEEEESSSSEEEEEEEETTEEEETTCEEEECTTSCCCCCCC-------CCCCCCTTTCSSGGGGG
T ss_pred hhhhhhhhccccccccccccccCceeeeEEEECCEEEecCCEEEECcccccccccccccccccccccccccccchhhhcc
Confidence 0
Q ss_pred -----CC--CCCC------------ccc-------------------------------cC-------------------
Q 003974 240 -----DS--DASS------------TIS-------------------------------SE------------------- 250 (782)
Q Consensus 240 -----~s--~~~~------------~~~-------------------------------~~------------------- 250 (782)
|+ +... +.. ++
T Consensus 691 ~~~~kg~~~~~~~Py~IgqI~eI~~~~~s~~~~~~~~~vrV~wFyRPedt~~~~~~~~~~D~nELf~S~~~~~vp~~~I~ 770 (1330)
T 3av4_A 691 SDYIKGSNLDAPEPYRIGRIKEIHCGKKKGKVNEADIKLRLYKFYRPENTHRSYNGSYHTDINMLYWSDEEAVVNFSDVQ 770 (1330)
T ss_dssp C-------CCCCCCCEEEEEEECCCCEETTEECSSCCEEEEEEEECTTTSTTGGGTTTTSCTTBCEEEEEEEEEEGGGCC
T ss_pred cccccccccCCCCCceEEEEEEEEecCCccccCCCceEEEEEEeeChhhcccccccccccCcceEEeeccceecCHHHcC
Confidence 00 0000 000 00
Q ss_pred ----------CCCC-------------------------------------C-----------------------CCCCC
Q 003974 251 ----------TGSN-------------------------------------S-----------------------PIGQP 260 (782)
Q Consensus 251 ----------~~~~-------------------------------------~-----------------------~~~~~ 260 (782)
.+.. + .+.+.
T Consensus 771 GKC~V~~~~d~~~~i~~y~~~g~d~Fy~~~~Yd~~~k~~~~~P~~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~~~ 850 (1330)
T 3av4_A 771 GRCTVEYGEDLLESIQDYSQGGPDRFYFLEAYNSKTKNFEDPPNHARSPGNKGKGKGKGKGKGKHQVSEPKEPEAAIKLP 850 (1330)
T ss_dssp EEEEEEESTTCSSCHHHHHHTSTTEEEESCEEETTTTEEECCCGGGCC-----------------------------CCC
T ss_pred ceEEEEecccccccccccccCCCCeEEEEEEecccCCeeccCchHhhcccccccccccccccccccccccccchhhhccC
Confidence 0000 0 01245
Q ss_pred CcceeccccccchhHHHHHHhhhhcCC-ceeeEEEEecCHHHHHHHHHhCCCCcccccchHHHHHHHHHHHHHhhhhccc
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGV-KLVTRWAIDINPHACKSLKFNHPETKVRNEAADDFLSLLKEWAKLCQYFSIY 339 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~-~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 339 (782)
++++||||||||||++|| ++||+ + ++||+|+|+.|++||++|||++.++.+|+.+++...
T Consensus 851 ~l~viDLFsG~GGlslGf----e~AG~~~--vv~avEid~~A~~ty~~N~p~~~~~~~DI~~l~~~~------------- 911 (1330)
T 3av4_A 851 KLRTLDVFSGCGGLSEGF----HQAGISE--TLWAIEMWDPAAQAFRLNNPGTTVFTEDCNVLLKLV------------- 911 (1330)
T ss_dssp CEEEEEETCTTSHHHHHH----HHTTSEE--EEEEECCSHHHHHHHHHHCTTSEEECSCHHHHHHHH-------------
T ss_pred CceEEecccCccHHHHHH----HHCCCCc--eEEEEECCHHHHHHHHHhCCCCcEeeccHHHHhHhh-------------
Confidence 689999999999999999 68998 5 459999999999999999999999999998764210
Q ss_pred CCCCCcccccccCchhhhhhhhhhhcccCCCCCCchhHHHHHHHHHhcCCCCCCCCCcceeEEeeccCCCCCCCcccccc
Q 003974 340 DTDKVPEQSLNFMSEEEEEEEEEEEENDDDANVPNEEFEVERLIAVCYGDPNKTKKPGVYFKVRWKGYGPSEDTWEPIKG 419 (782)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 419 (782)
+.|++...
T Consensus 912 ----------------------------------------------~~gdi~~~-------------------------- 919 (1330)
T 3av4_A 912 ----------------------------------------------MAGEVTNS-------------------------- 919 (1330)
T ss_dssp ----------------------------------------------TTTCSBCS--------------------------
T ss_pred ----------------------------------------------hccchhhh--------------------------
Confidence 00111000
Q ss_pred cchhhhhhHHhHhccccccCCCCCCCccEEEecCCchhhcccCcCCCCCccccccccchHHHHHHHHHHhCCcEEEeccc
Q 003974 420 LSKCKEKLKEFVTKGYRSNILPLPGDVDFICGGPPCQGVSGFNRFRNPQAALEDIKNRQLLVFMDVIEYLKPKYVLMENV 499 (782)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~p~~~~vDvl~ggpPCQ~fS~ag~~~~~~~~~~d~r~~L~~~~~~ii~~~~P~~~v~ENV 499 (782)
....+|..+++|||+||||||+||.+|+++ ....+|+|+.|+.+|+++|+.++|++||||||
T Consensus 920 ----------------~~~~lp~~~~vDvl~GGpPCQ~FS~agr~~--~~~~~d~R~~L~~~~lriv~~~rPk~fv~ENV 981 (1330)
T 3av4_A 920 ----------------LGQRLPQKGDVEMLCGGPPCQGFSGMNRFN--SRTYSKFKNSLVVSFLSYCDYYRPRFFLLENV 981 (1330)
T ss_dssp ----------------SCCBCCCTTTCSEEEECCCCTTTCSSSCCC--HHHHHHHHHSHHHHHHHHHHHHCCSEEEEEEE
T ss_pred ----------------hhhhccccCccceEEecCCCcccccccccc--cccccchhhHHHHHHHHHHHHhcCcEEEEecc
Confidence 001234457899999999999999999743 23457899999999999999999999999999
Q ss_pred cccccccccchHHHHHHHHhcCCcceEEEEEecccCCCCccccEEEEEEecCCCCCCCCCCCccccccccC-CCc-----
Q 003974 500 VDILKFSGGFLARYAVGRLVSMDYQTRLGIMAAGSYGLPQFRLRVFLWGARPFKKLPQYPLPTHEIVARGV-IPN----- 573 (782)
Q Consensus 500 ~gl~~~~~~~~~~~i~~~l~~~GY~v~~~ilnA~~yGvPQ~R~R~flig~~~~~~~p~~P~pth~~~~~~~-~p~----- 573 (782)
+||+++.++.+++.++..|..+||++.+.+|||++|||||+|+|+||||++.+..+|.||.|||.+..+.. +..
T Consensus 982 ~glls~~~g~~~~~il~~L~~lGY~v~~~vLnA~dyGVPQ~R~Rvfivg~r~~~~~~~fP~pth~~~~~~~~l~~~~~~~ 1061 (1330)
T 3av4_A 982 RNFVSYRRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDK 1061 (1330)
T ss_dssp GGGGTTTTTHHHHHHHHHHHHHTCEEEEEEEEGGGGSCSBCCEEEEEEEECTTSCCCCCCCCCBCCCGGGCCCCEEETTE
T ss_pred HHHhccCccHHHHHHHHHHHhcCCeeeEEEecHHHcCCCccccEEEEEEecCCCcccCCCCccccccccccccccccccc
Confidence 99999988999999999999999999999999999999999999999999999888899999996432100 000
Q ss_pred hhHHHHHhhcCCCCccccCcccHHhhhccCCCCCCCCCccccccCCccchHHHHHHHhhcccccccccccccCCCCccCC
Q 003974 574 EFQEIIVAYANNQPCQLEKGVLLSDAISDLPLVTNNESEDERKYGTVARTEFQKYIRLRRHDVVNLSSAQMASRPSLLYD 653 (782)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~tv~dAI~dLp~~~~~~~~~~~~y~~~p~t~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~ 653 (782)
.|... +.+ ....+.+.+||+|||+|||.+.++.....+.|...+.++|++.||.... ...+.+
T Consensus 1062 ~~~~~-i~~---~~~~p~~~vTV~DAI~DLP~i~~g~~~~~~~y~~~p~s~~q~~iR~~~~-------------~~~l~~ 1124 (1330)
T 3av4_A 1062 KFVSN-ITR---LSSGPFRTITVRDTMSDLPEIQNGASNSEIPYNGEPLSWFQRQLRGSHY-------------QPILRD 1124 (1330)
T ss_dssp EECCS-CCC---SSCCSBCCCCHHHHHTTSCCCCTTCCCSEEECCSCCCSHHHHHHHCSSC-------------CCEEEC
T ss_pred ccccc-ccc---cccCCcCCCcHHHHhhcCcccccCCcccccccCCCcccHHHHHhhcccc-------------cccccc
Confidence 00000 000 0012235689999999999998876666778877789999999986431 134678
Q ss_pred CCccCCCHHHHHHHccCcccCCCCccCCCCCccC-CCCCc----ccC-cchhh-------h----hhcCCC---------
Q 003974 654 HRPFQVNNDDYERVCCIPKRKGANFRDLPGVLVG-PDNKV----RWD-PSMER-------V----MLKSGK--------- 707 (782)
Q Consensus 654 H~~~~~~~~~~~ri~~ip~~~G~~~rdlp~~~~~-~~~~~----~~~-~~~~~-------~----~l~~gk--------- 707 (782)
|.++.++....+|+..||..+|++|+|+|...+. .++.. .+. ..... + ....|+
T Consensus 1125 H~~~~~s~~~~~Ri~~ip~~~G~~~~dlp~~~~~l~~g~~~~~l~y~~~~~k~g~~~~~~lrg~~~~~~Gk~~~p~~r~~ 1204 (1330)
T 3av4_A 1125 HICKDMSPLVAARMRHIPLFPGSDWRDLPNIQVRLGDGVIAHKLQYTFHDVKNGYSSTGALRGVCSCAEGKACDPESRQF 1204 (1330)
T ss_dssp CCCCCCCHHHHHHHHHSCSSTTCCGGGCCCCCEECSSSCEEBCCCCCBCCTTTCCCTTSCCCBSSGGGGTSCCCSSSCCC
T ss_pred ccccccCHHHHHHHHhccCCCCCCcccchhhhhhcccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999998889999999964321 11100 000 00000 0 001122
Q ss_pred -CCCccccccc--ccCCCCCCeeeccCCCcccceecccCCC--CCcccCCCCCccCcHHHHHHhcCCCCCcEEcCCCCC
Q 003974 708 -PLVPDYAMKF--EHQSSTKPFGRLWWDEIVNTVVTRAQPH--NRILLHPSQDRVLTIRENARLQGFPDCYQLFGPVKE 781 (782)
Q Consensus 708 -~l~p~~~~~~--~~~~~~~~y~Rl~wd~p~pTItt~~~~~--~~~~iHP~q~R~LTVREaARLQgFPD~y~F~Gs~~~ 781 (782)
.++|++.... ..+.+.+.|+||+||+|++|++|...+. .++++||.|+|.||||||||||||||+|.|.|+.++
T Consensus 1205 ~tL~p~~~~~~g~~~~~~~~~ygRL~~d~p~sttiT~~~~~~k~g~~iHP~q~R~LTVREaARLQsFPDdF~F~Gs~t~ 1283 (1330)
T 3av4_A 1205 STLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSYRFFGNILD 1283 (1330)
T ss_dssp SBSSCTHHHHHGGGTGGGTTTTCBCCTTSCBSSCCSSCCTTSSSCCCBCSSSSSBCCHHHHHHHTTCCTTCCCCSSHHH
T ss_pred cccccccccccccccccccccceecccCCCCCceEeCCcccCCCCcccCccccccCCHHHHHHhcCCCCCeEECCCHhh
Confidence 1222221111 1234678899999999988888765432 367999999999999999999999999999998653
No 4
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=100.00 E-value=1.8e-65 Score=567.70 Aligned_cols=330 Identities=25% Similarity=0.318 Sum_probs=251.4
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchHHHHHHHHHHHHHhhhhcccC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDFLSLLKEWAKLCQYFSIYD 340 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 340 (782)
+|++|||||||||+++|| +.+|++++ ||||+|+.|++||+.|||++.++++||.++.
T Consensus 2 ~~~vidLFsG~GGlslG~----~~aG~~~v--~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~----------------- 58 (376)
T 3g7u_A 2 SLNVIDLFSGVGGLSLGA----ARAGFDVK--MAVEIDQHAINTHAINFPRSLHVQEDVSLLN----------------- 58 (376)
T ss_dssp CCEEEEETCTTSHHHHHH----HHHTCEEE--EEECSCHHHHHHHHHHCTTSEEECCCGGGCC-----------------
T ss_pred CCeEEEEccCcCHHHHHH----HHCCCcEE--EEEeCCHHHHHHHHHhCCCCceEecChhhcC-----------------
Confidence 589999999999999999 68999854 9999999999999999999999888886641
Q ss_pred CCCCcccccccCchhhhhhhhhhhcccCCCCCCchhHHHHHHHHHhcCCCCCCCCCcceeEEeeccCCCCCCCccccccc
Q 003974 341 TDKVPEQSLNFMSEEEEEEEEEEEENDDDANVPNEEFEVERLIAVCYGDPNKTKKPGVYFKVRWKGYGPSEDTWEPIKGL 420 (782)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 420 (782)
.+++ ...
T Consensus 59 ---------------------------------~~~~-----~~~----------------------------------- 65 (376)
T 3g7u_A 59 ---------------------------------AEII-----KGF----------------------------------- 65 (376)
T ss_dssp ---------------------------------HHHH-----HHH-----------------------------------
T ss_pred ---------------------------------HHHH-----Hhh-----------------------------------
Confidence 1111 000
Q ss_pred chhhhhhHHhHhccccccCCCCCCCccEEEecCCchhhcccCcCCCCCccccccccchHHHHHHHHHHhCCcEEEecccc
Q 003974 421 SKCKEKLKEFVTKGYRSNILPLPGDVDFICGGPPCQGVSGFNRFRNPQAALEDIKNRQLLVFMDVIEYLKPKYVLMENVV 500 (782)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~p~~~~vDvl~ggpPCQ~fS~ag~~~~~~~~~~d~r~~L~~~~~~ii~~~~P~~~v~ENV~ 500 (782)
. + ..+++|||+||||||+||.+|++ +.+|+|+.|+.+++++|+.++|++||||||+
T Consensus 66 ----------~--------~-~~~~~D~i~ggpPCQ~fS~ag~~-----~~~d~r~~L~~~~~~~v~~~~P~~~v~ENV~ 121 (376)
T 3g7u_A 66 ----------F--------K-NDMPIDGIIGGPPCQGFSSIGKG-----NPDDSRNQLYMHFYRLVSELQPLFFLAENVP 121 (376)
T ss_dssp ----------H--------C-SCCCCCEEEECCCCCTTC------------CHHHHHHHHHHHHHHHHHCCSEEEEEECT
T ss_pred ----------c--------c-cCCCeeEEEecCCCCCcccccCC-----CCCCchHHHHHHHHHHHHHhCCCEEEEecch
Confidence 0 0 13589999999999999999863 4589999999999999999999999999999
Q ss_pred ccccccccchHHHHHHHHhcCCcce-EEEEEecccCCCCccccEEEEEEecCCCCCCCCCCCccccccccCCCchhHHHH
Q 003974 501 DILKFSGGFLARYAVGRLVSMDYQT-RLGIMAAGSYGLPQFRLRVFLWGARPFKKLPQYPLPTHEIVARGVIPNEFQEII 579 (782)
Q Consensus 501 gl~~~~~~~~~~~i~~~l~~~GY~v-~~~ilnA~~yGvPQ~R~R~flig~~~~~~~p~~P~pth~~~~~~~~p~~~~~~~ 579 (782)
||++.+++.+++.++ .|.++||++ .+.+|||++|||||+|+|+||||+++++.+|.| .|||..
T Consensus 122 gl~s~~~~~~~~~i~-~l~~~GY~v~~~~vl~a~dyGvPQ~R~R~~iig~r~~~~~~~~-~p~~~~-------------- 185 (376)
T 3g7u_A 122 GIMQEKYSGIRNKAF-NLVSGDYDILDPIKVKASDYGAPTIRTRYFFIGVKKSLKLDIS-DEVFMP-------------- 185 (376)
T ss_dssp TTTCGGGHHHHHHHH-HHHHTTEEECCCEEEEGGGGTCSBCCEEEEEEEEEGGGCCCCC-GGGTSC--------------
T ss_pred HhhccCcHHHHHHHH-HHHcCCCccCcEEEEEHhhCCCCCCCcEEEEEEEeCCCCCCcc-cccccc--------------
Confidence 999988888999999 999999999 999999999999999999999999999877655 666642
Q ss_pred HhhcCCCCccccCcccHHhhhccCCCCCC-CCCcccc---ccCCccchHHHHHHHhhcccccccccccccCCCCccCCCC
Q 003974 580 VAYANNQPCQLEKGVLLSDAISDLPLVTN-NESEDER---KYGTVARTEFQKYIRLRRHDVVNLSSAQMASRPSLLYDHR 655 (782)
Q Consensus 580 ~~~~~~~~~~~~~~~tv~dAI~dLp~~~~-~~~~~~~---~y~~~p~t~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~H~ 655 (782)
.+.+++||+|||+|||.+.+ +...... .|...+.+.|++.||.......+............+.+|.
T Consensus 186 ---------~~~~~~tv~dai~dlp~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~~~~~~~~~~~~~~~~~~~~~~~h~ 256 (376)
T 3g7u_A 186 ---------KMIDPVTVKDALYGLPDIIDANWQSDSESWRTIKKDRKGGFYEKLWGQIPRNVGDTESIAKLKNNIISGCT 256 (376)
T ss_dssp ---------CSCCCCCHHHHTTTCCSSCEEESSCSSCCCEECCCCCCSHHHHHHHCCCCTTCSCHHHHHHHHTTEESCCE
T ss_pred ---------ccCCCCcHHHHHhcCCcccccccccccccccccCccCccHHHHHhhcCccccccccccccccccccccccc
Confidence 13457999999999998765 2221112 2333467899999996421000000000000123477899
Q ss_pred ccCCCHHHHHHHccCcccCCCCccCCCCCccCCCCCcccCcchhhhhhcCCCCCCcccccccccCCCCCCeeeccCCCcc
Q 003974 656 PFQVNNDDYERVCCIPKRKGANFRDLPGVLVGPDNKVRWDPSMERVMLKSGKPLVPDYAMKFEHQSSTKPFGRLWWDEIV 735 (782)
Q Consensus 656 ~~~~~~~~~~ri~~ip~~~G~~~rdlp~~~~~~~~~~~~~~~~~~~~l~~gk~l~p~~~~~~~~~~~~~~y~Rl~wd~p~ 735 (782)
...+++..++|+..||. |.+ .+.+.|+||+||+||
T Consensus 257 ~~~~~~~~~~r~~~~~~--G~~-------------------------------------------~~~~~~~Rl~~d~ps 291 (376)
T 3g7u_A 257 GTLHSKIVQERYASLSF--GET-------------------------------------------DKISRSTRLDPNGFC 291 (376)
T ss_dssp EECCCHHHHHHHHTCCT--TCB-------------------------------------------CTTTCCBBCCTTSCB
T ss_pred ccccCHHHHHHHHhCCC--CCC-------------------------------------------ccCCceeecCcccCC
Confidence 99999999999999874 311 124579999999999
Q ss_pred cceecccCCCC-----CcccCCCCCccCcHHHHHHhcCCCCCcEEcCCCC
Q 003974 736 NTVVTRAQPHN-----RILLHPSQDRVLTIRENARLQGFPDCYQLFGPVK 780 (782)
Q Consensus 736 pTItt~~~~~~-----~~~iHP~q~R~LTVREaARLQgFPD~y~F~Gs~~ 780 (782)
+||+|++.+.. ++++||.|+|.||||||||||||||+|.|.|+.+
T Consensus 292 ~Ti~~~~~~~~g~~~~~r~~HP~~~R~lTvRE~ARlQsFPD~f~f~g~~~ 341 (376)
T 3g7u_A 292 PTLRAGTARDKGSFQAVRPIHPYHPRVITPREAARLQGFPDWFRFHVTKW 341 (376)
T ss_dssp CCC-------------CCCBCSSSSSBCCHHHHHHHHTCCTTCCCCSSHH
T ss_pred CceecCcCCCCCcccCccccCCccCcCCCHHHHHHhCCCCcceEECCChH
Confidence 99999876443 4679999999999999999999999999999864
No 5
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=100.00 E-value=4.3e-55 Score=477.15 Aligned_cols=190 Identities=25% Similarity=0.393 Sum_probs=163.2
Q ss_pred cceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchHHHHHHHHHHHHHhhhhcccCC
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDFLSLLKEWAKLCQYFSIYDT 341 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 341 (782)
|++||||||||||++|| ++|||+++ ||+|+|+.|++||++|||+ .++.+||.++
T Consensus 1 mkvidLFsG~GG~~~G~----~~aG~~~v--~a~e~d~~a~~ty~~N~~~-~~~~~DI~~i------------------- 54 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGF----QKAGFRII--CANEYDKSIWKTYESNHSA-KLIKGDISKI------------------- 54 (331)
T ss_dssp CEEEEESCTTCHHHHHH----HHTTCEEE--EEEECCTTTHHHHHHHCCS-EEEESCGGGC-------------------
T ss_pred CeEEEeCcCccHHHHHH----HHCCCEEE--EEEeCCHHHHHHHHHHCCC-CcccCChhhC-------------------
Confidence 68999999999999999 78999854 9999999999999999996 4556666543
Q ss_pred CCCcccccccCchhhhhhhhhhhcccCCCCCCchhHHHHHHHHHhcCCCCCCCCCcceeEEeeccCCCCCCCcccccccc
Q 003974 342 DKVPEQSLNFMSEEEEEEEEEEEENDDDANVPNEEFEVERLIAVCYGDPNKTKKPGVYFKVRWKGYGPSEDTWEPIKGLS 421 (782)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 421 (782)
+.++
T Consensus 55 -------------------------------~~~~--------------------------------------------- 58 (331)
T 3ubt_Y 55 -------------------------------SSDE--------------------------------------------- 58 (331)
T ss_dssp -------------------------------CGGG---------------------------------------------
T ss_pred -------------------------------CHhh---------------------------------------------
Confidence 1111
Q ss_pred hhhhhhHHhHhccccccCCCCCCCccEEEecCCchhhcccCcCCCCCccccccccchHHHHHHHHHHhCCcEEEeccccc
Q 003974 422 KCKEKLKEFVTKGYRSNILPLPGDVDFICGGPPCQGVSGFNRFRNPQAALEDIKNRQLLVFMDVIEYLKPKYVLMENVVD 501 (782)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~p~~~~vDvl~ggpPCQ~fS~ag~~~~~~~~~~d~r~~L~~~~~~ii~~~~P~~~v~ENV~g 501 (782)
.+++|||+||||||+||.||+++ +.+|+|+.|+++++++|++++|++||||||+|
T Consensus 59 ---------------------~~~~D~l~ggpPCQ~fS~ag~~~----g~~d~R~~L~~~~~r~i~~~~Pk~~~~ENV~g 113 (331)
T 3ubt_Y 59 ---------------------FPKCDGIIGGPPSQSWSEGGSLR----GIDDPRGKLFYEYIRILKQKKPIFFLAENVKG 113 (331)
T ss_dssp ---------------------SCCCSEEECCCCGGGTEETTEEC----CTTCGGGHHHHHHHHHHHHHCCSEEEEEECCG
T ss_pred ---------------------CCcccEEEecCCCCCcCCCCCcc----CCCCchhHHHHHHHHHHhccCCeEEEeeeecc
Confidence 13799999999999999999754 35899999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHhcCCcceEEEEEecccCCCCccccEEEEEEecCCCCCCCCCCCccccccccCCCchhHHHHHh
Q 003974 502 ILKFSGGFLARYAVGRLVSMDYQTRLGIMAAGSYGLPQFRLRVFLWGARPFKKLPQYPLPTHEIVARGVIPNEFQEIIVA 581 (782)
Q Consensus 502 l~~~~~~~~~~~i~~~l~~~GY~v~~~ilnA~~yGvPQ~R~R~flig~~~~~~~p~~P~pth~~~~~~~~p~~~~~~~~~ 581 (782)
|++..++..+..++..|.++||++.+.+|||++|||||+|+|+||||++++...+.+|..+|.
T Consensus 114 l~~~~~~~~~~~i~~~l~~~GY~v~~~vlna~~yGvPQ~R~Rvfivg~r~~~~~~~~~p~~~~----------------- 176 (331)
T 3ubt_Y 114 MMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRVFYIGFRKELNINYLPPIPHL----------------- 176 (331)
T ss_dssp GGGCTTSHHHHHHHHHHHHHTEEEEEEEEEGGGTTCSBCCEEEEEEEEEGGGCCCCCCCCCCS-----------------
T ss_pred cccccccchhhhhhhhhccCCcEEEEEecccccCCCCcccceEEEEEEcCCCCcCCCCCCCcC-----------------
Confidence 999999999999999999999999999999999999999999999999998765433322221
Q ss_pred hcCCCCccccCcccHHhhhccCCC
Q 003974 582 YANNQPCQLEKGVLLSDAISDLPL 605 (782)
Q Consensus 582 ~~~~~~~~~~~~~tv~dAI~dLp~ 605 (782)
...|+.|+|+||+.
T Consensus 177 ----------~~~t~~d~i~~l~~ 190 (331)
T 3ubt_Y 177 ----------IKPTFKDVIWDLKD 190 (331)
T ss_dssp ----------CCCCGGGTSGGGSS
T ss_pred ----------CCCcHHHHhhhccc
Confidence 24688999999875
No 6
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=100.00 E-value=5.6e-53 Score=459.57 Aligned_cols=284 Identities=20% Similarity=0.291 Sum_probs=213.4
Q ss_pred CCCCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchHHHHHHHHHHHHHhhhhc
Q 003974 258 GQPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDFLSLLKEWAKLCQYFS 337 (782)
Q Consensus 258 ~~~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~~~~~~~~~~~~~~~~~ 337 (782)
++..++++||||||||+++|| +.+|++++ ||+|+|+.|++||+.|||++. .+||.++.
T Consensus 8 ~~~~~~~~dLFaG~Gg~~~g~----~~aG~~~v--~~~e~d~~a~~t~~~N~~~~~--~~Di~~~~-------------- 65 (327)
T 2c7p_A 8 QLTGLRFIDLFAGLGGFRLAL----ESCGAECV--YSNEWDKYAQEVYEMNFGEKP--EGDITQVN-------------- 65 (327)
T ss_dssp TTTTCEEEEETCTTTHHHHHH----HHTTCEEE--EEECCCHHHHHHHHHHHSCCC--BSCGGGSC--------------
T ss_pred ccCCCcEEEECCCcCHHHHHH----HHCCCeEE--EEEeCCHHHHHHHHHHcCCCC--cCCHHHcC--------------
Confidence 345689999999999999999 68999854 999999999999999999865 45654420
Q ss_pred ccCCCCCcccccccCchhhhhhhhhhhcccCCCCCCchhHHHHHHHHHhcCCCCCCCCCcceeEEeeccCCCCCCCcccc
Q 003974 338 IYDTDKVPEQSLNFMSEEEEEEEEEEEENDDDANVPNEEFEVERLIAVCYGDPNKTKKPGVYFKVRWKGYGPSEDTWEPI 417 (782)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 417 (782)
.+
T Consensus 66 ------------------------------------~~------------------------------------------ 67 (327)
T 2c7p_A 66 ------------------------------------EK------------------------------------------ 67 (327)
T ss_dssp ------------------------------------GG------------------------------------------
T ss_pred ------------------------------------Hh------------------------------------------
Confidence 00
Q ss_pred cccchhhhhhHHhHhccccccCCCCCCCccEEEecCCchhhcccCcCCCCCccccccccchHHHHHHHHHHhCCcEEEec
Q 003974 418 KGLSKCKEKLKEFVTKGYRSNILPLPGDVDFICGGPPCQGVSGFNRFRNPQAALEDIKNRQLLVFMDVIEYLKPKYVLME 497 (782)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~vDvl~ggpPCQ~fS~ag~~~~~~~~~~d~r~~L~~~~~~ii~~~~P~~~v~E 497 (782)
.+ +++|||+||||||+||.||+++ +.+|+|+.|+++++++|+.++|++|+||
T Consensus 68 ---------------------~~---~~~D~l~~gpPCQ~fS~ag~~~----g~~d~r~~L~~~~~r~i~~~~P~~~~~E 119 (327)
T 2c7p_A 68 ---------------------TI---PDHDILCAGFPCQAFSISGKQK----GFEDSRGTLFFDIARIVREKKPKVVFME 119 (327)
T ss_dssp ---------------------GS---CCCSEEEEECCCTTTCTTSCCC----GGGSTTSCHHHHHHHHHHHHCCSEEEEE
T ss_pred ---------------------hC---CCCCEEEECCCCCCcchhcccC----CCcchhhHHHHHHHHHHHhccCcEEEEe
Confidence 01 2689999999999999999743 4679999999999999999999999999
Q ss_pred cccccccccccchHHHHHHHHhcCCcceEEEEEecccCCCCccccEEEEEEecCCCCC--CCCCCCccccccccCCCchh
Q 003974 498 NVVDILKFSGGFLARYAVGRLVSMDYQTRLGIMAAGSYGLPQFRLRVFLWGARPFKKL--PQYPLPTHEIVARGVIPNEF 575 (782)
Q Consensus 498 NV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~ilnA~~yGvPQ~R~R~flig~~~~~~~--p~~P~pth~~~~~~~~p~~~ 575 (782)
||+||++.+++..++.+++.|+++||.+.+.+|||++|||||+|+|+||||++.++.. +.||.|+|.
T Consensus 120 NV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~~iv~~~~~~~~~~~~fP~~~~~----------- 188 (327)
T 2c7p_A 120 NVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFEL----------- 188 (327)
T ss_dssp EEGGGGTGGGGHHHHHHHHHHHHTTBCCEEEEEEGGGGTCSBCCEEEEEEEEBGGGCCCCCCCCCCCCC-----------
T ss_pred CcHHHHhccccHHHHHHHHHHHhCCCEEEEEEEEHHHcCCCccceEEEEEEEeCCCCcccccCCCCcCC-----------
Confidence 9999999888889999999999999999999999999999999999999999987642 456777653
Q ss_pred HHHHHhhcCCCCccccCcccHHhhhccCCCCCCCCCccccccCCccchHHHHHHHhhcccccccccccccCCCCccCCCC
Q 003974 576 QEIIVAYANNQPCQLEKGVLLSDAISDLPLVTNNESEDERKYGTVARTEFQKYIRLRRHDVVNLSSAQMASRPSLLYDHR 655 (782)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~tv~dAI~dLp~~~~~~~~~~~~y~~~p~t~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~H~ 655 (782)
..|++|+|.+++... .|.... ...++.|.
T Consensus 189 -----------------~~tl~d~l~~~~~~~--------~~~~~~--------------------------~~~~~~l~ 217 (327)
T 2c7p_A 189 -----------------NTFVKDLLLPDSEVE--------HLVIDR--------------------------KDLVMTNQ 217 (327)
T ss_dssp -----------------CCCGGGTCCCGGGTG--------GGEECC--------------------------TTCEECSC
T ss_pred -----------------CCcHHHHhcccCCcc--------cccccC--------------------------CcceeEee
Confidence 368899998765100 010000 00000000
Q ss_pred ccCCCHHHHHHHccCcccCCCCccCCCCCccCCCCCcccCcchhhhhhcCCCCCCcccccccccCCCCCCeeeccCCCcc
Q 003974 656 PFQVNNDDYERVCCIPKRKGANFRDLPGVLVGPDNKVRWDPSMERVMLKSGKPLVPDYAMKFEHQSSTKPFGRLWWDEIV 735 (782)
Q Consensus 656 ~~~~~~~~~~ri~~ip~~~G~~~rdlp~~~~~~~~~~~~~~~~~~~~l~~gk~l~p~~~~~~~~~~~~~~y~Rl~wd~p~ 735 (782)
. ... +. .+.... . + . ......|+|+.|++++
T Consensus 218 ~------------~~~---~~-~~~~~~----------------~--------~--------~-~~~~~~~~~~~~~~~~ 248 (327)
T 2c7p_A 218 E------------IEQ---TT-PKTVRL----------------G--------I--------V-GKGGQGERIYSTRGIA 248 (327)
T ss_dssp C------------CSS---CC-SSCCEE----------------E--------E--------S-TTCCTTCEEEETTSCB
T ss_pred c------------ccc---Cc-cchhhh----------------h--------h--------c-cCCccccccccCCCCc
Confidence 0 000 00 000000 0 0 0 0011236888899999
Q ss_pred cceecccC---CCCCcccCCCCCccCcHHHHHHhcCCCCCcEEcCCCC
Q 003974 736 NTVVTRAQ---PHNRILLHPSQDRVLTIRENARLQGFPDCYQLFGPVK 780 (782)
Q Consensus 736 pTItt~~~---~~~~~~iHP~q~R~LTVREaARLQgFPD~y~F~Gs~~ 780 (782)
+||+++.. ...+..+||.++|.||||||||||||||+|.|.|+.+
T Consensus 249 ~Ti~~~~~~~~~~~~~~~~~~~~R~LT~rE~aRLQgFPd~f~f~gs~~ 296 (327)
T 2c7p_A 249 ITLSAYGGGIFAKTGGYLVNGKTRKLHPRECARVMGYPDSYKVHPSTS 296 (327)
T ss_dssp CCCCSSCCSTTTTTCEEEETTEEEECCHHHHHHHTTCCTTSCCCSSHH
T ss_pred CceecCCCCccCCCCccCCCCCCcCCCHHHHHHHCCCCcCcEeCCCHH
Confidence 99998732 1234678999999999999999999999999998754
No 7
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=100.00 E-value=3.1e-49 Score=433.41 Aligned_cols=178 Identities=28% Similarity=0.432 Sum_probs=138.4
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchHHHHHHHHHHHHHhhhhcccC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDFLSLLKEWAKLCQYFSIYD 340 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 340 (782)
++++||||||+||+++|| +.+|+++.++||+|+|+.|++||+.|||++.++.+||.++.
T Consensus 2 ~~~v~dLFaG~Gg~~~g~----~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~----------------- 60 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHAL----RESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGIT----------------- 60 (343)
T ss_dssp CEEEEEETCTTCHHHHHH----HHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCC-----------------
T ss_pred CCeEEEeCcCccHHHHHH----HHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHcc-----------------
Confidence 579999999999999999 68996555669999999999999999999888888876541
Q ss_pred CCCCcccccccCchhhhhhhhhhhcccCCCCCCchhHHHHHHHHHhcCCCCCCCCCcceeEEeeccCCCCCCCccccccc
Q 003974 341 TDKVPEQSLNFMSEEEEEEEEEEEENDDDANVPNEEFEVERLIAVCYGDPNKTKKPGVYFKVRWKGYGPSEDTWEPIKGL 420 (782)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 420 (782)
.+++
T Consensus 61 ---------------------------------~~~~------------------------------------------- 64 (343)
T 1g55_A 61 ---------------------------------LEEF------------------------------------------- 64 (343)
T ss_dssp ---------------------------------HHHH-------------------------------------------
T ss_pred ---------------------------------HhHc-------------------------------------------
Confidence 0000
Q ss_pred chhhhhhHHhHhccccccCCCCCCCccEEEecCCchhhcccCcCCCCCccccccccchHHHHHHHHHHhC--CcEEEecc
Q 003974 421 SKCKEKLKEFVTKGYRSNILPLPGDVDFICGGPPCQGVSGFNRFRNPQAALEDIKNRQLLVFMDVIEYLK--PKYVLMEN 498 (782)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~p~~~~vDvl~ggpPCQ~fS~ag~~~~~~~~~~d~r~~L~~~~~~ii~~~~--P~~~v~EN 498 (782)
. ..++|+|+||||||+||.||+++ +.+|+|+.|+++++++|+.++ |++|+|||
T Consensus 65 -------~--------------~~~~D~l~~gpPCq~fS~ag~~~----g~~d~r~~l~~~~~~~i~~~~~~P~~~~~EN 119 (343)
T 1g55_A 65 -------D--------------RLSFDMILMSPPCQPFTRIGRQG----DMTDSRTNSFLHILDILPRLQKLPKYILLEN 119 (343)
T ss_dssp -------H--------------HHCCSEEEECCC----------------------CHHHHHHHHGGGCSSCCSEEEEEE
T ss_pred -------C--------------cCCcCEEEEcCCCcchhhcCCcC----CccCccchHHHHHHHHHHHhcCCCCEEEEeC
Confidence 0 01689999999999999998643 457899999999999999999 99999999
Q ss_pred ccccccccccchHHHHHHHHhcCCcceEEEEEecccCCCCccccEEEEEEecCCCCCCCCCCCccc
Q 003974 499 VVDILKFSGGFLARYAVGRLVSMDYQTRLGIMAAGSYGLPQFRLRVFLWGARPFKKLPQYPLPTHE 564 (782)
Q Consensus 499 V~gl~~~~~~~~~~~i~~~l~~~GY~v~~~ilnA~~yGvPQ~R~R~flig~~~~~~~p~~P~pth~ 564 (782)
|+||++. ..+..+++.|.++||.+.+.+|||++||+||+|+|+||||.+.+.. ..||.|+|.
T Consensus 120 V~~l~~~---~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~~iv~~~~~~~-~~~p~~~~~ 181 (343)
T 1g55_A 120 VKGFEVS---STRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEP-LPFQAPGQV 181 (343)
T ss_dssp ETTGGGS---HHHHHHHHHHHHTTEEEEEEEECGGGGTCSCCCCEEEEEEEESSSC-CTTCCTTCE
T ss_pred CccccCH---HHHHHHHHHHHHCCCeeEEEEEEHHHCCCCCcccEEEEEEEeCCCC-CCCCCCcch
Confidence 9999864 4788899999999999999999999999999999999999998864 467888775
No 8
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=100.00 E-value=2.1e-47 Score=414.99 Aligned_cols=179 Identities=21% Similarity=0.341 Sum_probs=153.9
Q ss_pred CCCCCcceeccccccchhHHHHHHhhhhcCCceeeE-EEEecCHHHHHHHHHhCCCCcccccchHHHHHHHHHHHHHhhh
Q 003974 257 IGQPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTR-WAIDINPHACKSLKFNHPETKVRNEAADDFLSLLKEWAKLCQY 335 (782)
Q Consensus 257 ~~~~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~-~ave~~~~a~~t~~~N~p~~~~~~~d~~~~~~~~~~~~~~~~~ 335 (782)
+..++++++||||||||+++|| +.||+.+.++ ||+|+|+.|++||++|||++ ++.+||.++
T Consensus 6 m~~~~~~vidLFaG~GG~~~G~----~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~-~~~~DI~~~------------- 67 (327)
T 3qv2_A 6 MQQKQVNVIEFFSGIGGLRSSY----ERSSININATFIPFDINEIANKIYSKNFKEE-VQVKNLDSI------------- 67 (327)
T ss_dssp --CCCEEEEEETCTTTHHHHHH----HHSSCCCCEEEEEECCCHHHHHHHHHHHCCC-CBCCCTTTC-------------
T ss_pred ccCCCCEEEEECCChhHHHHHH----HHcCCCceEEEEEEECCHHHHHHHHHHCCCC-cccCChhhc-------------
Confidence 4567899999999999999999 7899866678 89999999999999999997 666676543
Q ss_pred hcccCCCCCcccccccCchhhhhhhhhhhcccCCCCCCchhHHHHHHHHHhcCCCCCCCCCcceeEEeeccCCCCCCCcc
Q 003974 336 FSIYDTDKVPEQSLNFMSEEEEEEEEEEEENDDDANVPNEEFEVERLIAVCYGDPNKTKKPGVYFKVRWKGYGPSEDTWE 415 (782)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~~~ 415 (782)
+.+++
T Consensus 68 -------------------------------------~~~~i-------------------------------------- 72 (327)
T 3qv2_A 68 -------------------------------------SIKQI-------------------------------------- 72 (327)
T ss_dssp -------------------------------------CHHHH--------------------------------------
T ss_pred -------------------------------------CHHHh--------------------------------------
Confidence 11111
Q ss_pred cccccchhhhhhHHhHhccccccCCCCCCCccEEEecCCchhh--cccCcCCCCCccccccccchHHHHHH-HHHHh--C
Q 003974 416 PIKGLSKCKEKLKEFVTKGYRSNILPLPGDVDFICGGPPCQGV--SGFNRFRNPQAALEDIKNRQLLVFMD-VIEYL--K 490 (782)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~vDvl~ggpPCQ~f--S~ag~~~~~~~~~~d~r~~L~~~~~~-ii~~~--~ 490 (782)
. ..++|||+||||||+| |.+|+++ +.+|+|+.|++++++ +|+.+ +
T Consensus 73 ------------~--------------~~~~Dil~ggpPCQ~fs~S~ag~~~----~~~d~r~~L~~~~~r~~i~~~~~~ 122 (327)
T 3qv2_A 73 ------------E--------------SLNCNTWFMSPPCQPYNNSIMSKHK----DINDPRAKSVLHLYRDILPYLINK 122 (327)
T ss_dssp ------------H--------------HTCCCEEEECCCCTTCSHHHHTTTC----TTTCGGGHHHHHHHHTTGGGCSSC
T ss_pred ------------c--------------cCCCCEEEecCCccCcccccCCCCC----CCccccchhHHHHHHHHHHHhccC
Confidence 0 0268999999999999 9998754 357999999999999 99999 9
Q ss_pred CcEEEeccccccccccccchHHHHHHHHhcCCcceEEEEEecccCCCCccccEEEEEEecCCCCCCCCCCCccc
Q 003974 491 PKYVLMENVVDILKFSGGFLARYAVGRLVSMDYQTRLGIMAAGSYGLPQFRLRVFLWGARPFKKLPQYPLPTHE 564 (782)
Q Consensus 491 P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~ilnA~~yGvPQ~R~R~flig~~~~~~~p~~P~pth~ 564 (782)
|++|+||||+||++. ..++.+++.|+++||.+.+.+|||++||+||+|+|+||||.+.+ +.||.|+|.
T Consensus 123 P~~~~lENV~gl~~~---~~~~~i~~~l~~~GY~v~~~vl~a~~yGvPQ~R~R~fivg~r~~---f~fP~~~~~ 190 (327)
T 3qv2_A 123 PKHIFIENVPLFKES---LVFKEIYNILIKNQYYIKDIICSPIDIGIPNSRTRYYVMARLTP---FKNEIQLHQ 190 (327)
T ss_dssp CSEEEEEECGGGGGS---HHHHHHHHHHHHTTCEEEEEEECGGGGTCSBCCCEEEEEEESSC---CCSCCCCCC
T ss_pred CCEEEEEchhhhcCh---HHHHHHHHHHHhCCCEEEEEEEeHHHcCCCccceEEEEEEEeCC---CCCCCcccc
Confidence 999999999999874 47889999999999999999999999999999999999999998 578888775
No 9
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=100.00 E-value=1.2e-46 Score=410.31 Aligned_cols=170 Identities=26% Similarity=0.387 Sum_probs=148.8
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchHHHHHHHHHHHHHhhhhccc
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDFLSLLKEWAKLCQYFSIY 339 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 339 (782)
++++++||||||||+++|| +.||+...++||+|+|+.|++||++|||++.++++||.++
T Consensus 2 m~~~~idLFaG~GG~~~G~----~~aG~~~~~v~a~e~d~~a~~ty~~N~~~~~~~~~DI~~~----------------- 60 (333)
T 4h0n_A 2 MSHKILELYSGIGGMHCAW----KESGLDGEIVAAVDINTVANSVYKHNFPETNLLNRNIQQL----------------- 60 (333)
T ss_dssp -CEEEEEETCTTTHHHHHH----HHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECCCGGGC-----------------
T ss_pred CCCEEEEECcCccHHHHHH----HHcCCCceEEEEEeCCHHHHHHHHHhCCCCceeccccccC-----------------
Confidence 5789999999999999999 6899855577999999999999999999998888887654
Q ss_pred CCCCCcccccccCchhhhhhhhhhhcccCCCCCCchhHHHHHHHHHhcCCCCCCCCCcceeEEeeccCCCCCCCcccccc
Q 003974 340 DTDKVPEQSLNFMSEEEEEEEEEEEENDDDANVPNEEFEVERLIAVCYGDPNKTKKPGVYFKVRWKGYGPSEDTWEPIKG 419 (782)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 419 (782)
+.+++
T Consensus 61 ---------------------------------~~~~~------------------------------------------ 65 (333)
T 4h0n_A 61 ---------------------------------TPQVI------------------------------------------ 65 (333)
T ss_dssp ---------------------------------CHHHH------------------------------------------
T ss_pred ---------------------------------CHHHh------------------------------------------
Confidence 11111
Q ss_pred cchhhhhhHHhHhccccccCCCCCCCccEEEecCCchhhcccCcCCCCCccccccccchHHHHHHHHHHhC-CcEEEecc
Q 003974 420 LSKCKEKLKEFVTKGYRSNILPLPGDVDFICGGPPCQGVSGFNRFRNPQAALEDIKNRQLLVFMDVIEYLK-PKYVLMEN 498 (782)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~p~~~~vDvl~ggpPCQ~fS~ag~~~~~~~~~~d~r~~L~~~~~~ii~~~~-P~~~v~EN 498 (782)
. ..++|||+||||||+||.+|+++ +.+|+|+.|+++++++|+.++ |++|+|||
T Consensus 66 --------~--------------~~~~D~l~ggpPCQ~fS~ag~~~----~~~d~r~~L~~~~~r~i~~~~~P~~~vlEN 119 (333)
T 4h0n_A 66 --------K--------------KWNVDTILMSPPCQPFTRNGKYL----DDNDPRTNSFLYLIGILDQLDNVDYILMEN 119 (333)
T ss_dssp --------H--------------HTTCCEEEECCCCCCSEETTEEC----CTTCTTSCCHHHHHHHGGGCTTCCEEEEEE
T ss_pred --------c--------------cCCCCEEEecCCCcchhhhhhcc----CCcCcccccHHHHHHHHHHhcCCCEEEEec
Confidence 0 02689999999999999999754 358999999999999999997 99999999
Q ss_pred ccccccccccchHHHHHHHHhcCCcceEEEEEecccCCCCccccEEEEEEecCCCC
Q 003974 499 VVDILKFSGGFLARYAVGRLVSMDYQTRLGIMAAGSYGLPQFRLRVFLWGARPFKK 554 (782)
Q Consensus 499 V~gl~~~~~~~~~~~i~~~l~~~GY~v~~~ilnA~~yGvPQ~R~R~flig~~~~~~ 554 (782)
|+||+++. .++.+++.|+++||.+.+.+|||++|||||+|+|+||||.+.++.
T Consensus 120 V~gl~~~~---~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~fiva~r~~~~ 172 (333)
T 4h0n_A 120 VKGFENST---VRNLFIDKLKECNFIYQEFLLCPSTVGVPNSRLRYYCTARRNNLT 172 (333)
T ss_dssp CTTGGGSH---HHHHHHHHHHHTTEEEEEEEECTTTTTCSCCCCEEEEEEEETTSC
T ss_pred chhhhhhh---HHHHHHHHHHhCCCeEEEEEecHHHcCCCccceEEEEEEEeCCCC
Confidence 99999753 678899999999999999999999999999999999999999864
No 10
>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}
Probab=100.00 E-value=1.2e-46 Score=418.72 Aligned_cols=118 Identities=21% Similarity=0.213 Sum_probs=105.5
Q ss_pred CCCccEEEecCCchhhcccCcCCCCCccccccccchHHHHHHHHHH--------hCCcEEEeccccccccccccchHHHH
Q 003974 443 PGDVDFICGGPPCQGVSGFNRFRNPQAALEDIKNRQLLVFMDVIEY--------LKPKYVLMENVVDILKFSGGFLARYA 514 (782)
Q Consensus 443 ~~~vDvl~ggpPCQ~fS~ag~~~~~~~~~~d~r~~L~~~~~~ii~~--------~~P~~~v~ENV~gl~~~~~~~~~~~i 514 (782)
|+.+|||+||||||+||.||++++. ....++|+.|+++++++|++ .+|++|+||||+||++..++..++.+
T Consensus 123 p~~vDll~ggpPCQ~fS~ag~~~g~-~d~~~~r~~L~~~~~rii~~~~~k~~~~~~Pk~~l~ENV~gl~~~~~~~~~~~i 201 (403)
T 4dkj_A 123 PKNIDIFTYSFPCQDLSVQGLQKGI-DKELNTRSGLLWEIERILEEIKNSFSKEEMPKYLLMENVKNLLSHKNKKNYNTW 201 (403)
T ss_dssp CSSCSEEEECCCCTTTCTTSCCCCC-CGGGCCSGGGHHHHHHHHHHHHHHSCGGGSCSEEEEEEEGGGGSHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCHHHhCCCCCC-CccccccchhHHHHHHHHHHhhhhhccccCCCEEEEecchhhhhhccchHHHHH
Confidence 4679999999999999999975432 11124899999999999999 89999999999999998888899999
Q ss_pred HHHHhcCCcceEEEEEecccCCCCccccEEEEEEecCCCCCCCCCCCccc
Q 003974 515 VGRLVSMDYQTRLGIMAAGSYGLPQFRLRVFLWGARPFKKLPQYPLPTHE 564 (782)
Q Consensus 515 ~~~l~~~GY~v~~~ilnA~~yGvPQ~R~R~flig~~~~~~~p~~P~pth~ 564 (782)
+..|.++||.+.+.+|||++|||||+|+|+||||.+++ +.||.|+|.
T Consensus 202 ~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~fiva~r~~---f~fP~~~~~ 248 (403)
T 4dkj_A 202 LKQLEKFGYKSKTYLLNSKNFDNCQNRERVFCLSIRDD---YLEKTGFKF 248 (403)
T ss_dssp HHHHHHTTEEEEEEEEEGGGTTCSBCCEEEEEEEEEHH---HHHHHCCCC
T ss_pred HHHHHhCCCeEEEEEecHHHcCCCccceEEEEEEEcCC---CCCCCcccc
Confidence 99999999999999999999999999999999999998 567888875
No 11
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=100.00 E-value=2.7e-44 Score=407.59 Aligned_cols=190 Identities=24% Similarity=0.360 Sum_probs=147.0
Q ss_pred CCCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC---CCCcccccchHHHHHHHHHHHHHhhh
Q 003974 259 QPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH---PETKVRNEAADDFLSLLKEWAKLCQY 335 (782)
Q Consensus 259 ~~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~---p~~~~~~~d~~~~~~~~~~~~~~~~~ 335 (782)
..++++|||||||||+++|| +.+|+++ +||+|+|+.|++||++|| |++.++++||.++.. .
T Consensus 86 ~~~~~viDLFaG~GGlslG~----~~aG~~~--v~avE~d~~A~~ty~~N~~~~p~~~~~~~DI~~i~~---------~- 149 (482)
T 3me5_A 86 HYAFRFIDLFAGIGGIRRGF----ESIGGQC--VFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDITL---------S- 149 (482)
T ss_dssp CCSEEEEEESCTTSHHHHHH----HTTTEEE--EEEECCCHHHHHHHHHHSCCCTTTCEEESCTHHHHC---------T-
T ss_pred CccceEEEecCCccHHHHHH----HHCCCEE--EEEEeCCHHHHHHHHHhcccCCCcceeccchhhhhh---------c-
Confidence 45799999999999999999 6899985 499999999999999999 788888999988620 0
Q ss_pred hcccCCCCCcccccccCchhhhhhhhhhhcccCCCCCCchhHHHHHHHHHhcCCCCCCCCCcceeEEeeccCCCCCCCcc
Q 003974 336 FSIYDTDKVPEQSLNFMSEEEEEEEEEEEENDDDANVPNEEFEVERLIAVCYGDPNKTKKPGVYFKVRWKGYGPSEDTWE 415 (782)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~~~ 415 (782)
....++.++.
T Consensus 150 --------------------------------~~~~~~~~~~-------------------------------------- 159 (482)
T 3me5_A 150 --------------------------------HQEGVSDEAA-------------------------------------- 159 (482)
T ss_dssp --------------------------------TCTTSCHHHH--------------------------------------
T ss_pred --------------------------------cccccchhhH--------------------------------------
Confidence 0000111110
Q ss_pred cccccchhhhhhHHhHhccccccCCCCCCCccEEEecCCchhhcccCcCCCC----Cccc-cccccchHHHHHHHHHHhC
Q 003974 416 PIKGLSKCKEKLKEFVTKGYRSNILPLPGDVDFICGGPPCQGVSGFNRFRNP----QAAL-EDIKNRQLLVFMDVIEYLK 490 (782)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~vDvl~ggpPCQ~fS~ag~~~~~----~~~~-~d~r~~L~~~~~~ii~~~~ 490 (782)
...+ .. ..+++|||+||||||+||.||+.+.. ..++ .|+|+.||++++++|+.++
T Consensus 160 -----------~~~i-~~--------~~~~~Dvl~gGpPCQ~FS~AG~~k~~~~g~~~G~~~D~R~~Lf~e~~riI~~~r 219 (482)
T 3me5_A 160 -----------AEHI-RQ--------HIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTLFFDVVRIIDARR 219 (482)
T ss_dssp -----------HHHH-HH--------HSCCCSEEEEECCCCCC------------------CTTTTSHHHHHHHHHHHHC
T ss_pred -----------Hhhh-hh--------cCCCCCEEEecCCCcchhhhCcccccccccccccccCccccHHHHHHHHHHHcC
Confidence 0000 00 02479999999999999999975431 1233 4889999999999999999
Q ss_pred CcEEEeccccccccccccchHHHHHHHHhcCCcceE---------EEEEecccCCCCccccEEEEEEecCCCCC
Q 003974 491 PKYVLMENVVDILKFSGGFLARYAVGRLVSMDYQTR---------LGIMAAGSYGLPQFRLRVFLWGARPFKKL 555 (782)
Q Consensus 491 P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~---------~~ilnA~~yGvPQ~R~R~flig~~~~~~~ 555 (782)
|++||||||+||++..++..++.+++.|.++||.+. +.+|||.+| |||+|+|+||||+++++.+
T Consensus 220 Pk~fvlENV~gl~s~~~g~~f~~i~~~L~~lGY~v~~~~~~g~~~~~vlnA~~~-vPQ~R~R~fivg~r~~~~~ 292 (482)
T 3me5_A 220 PAMFVLENVKNLKSHDKGKTFRIIMQTLDELGYDVADAEDNGPDDPKIIDGKHF-LPQHRERIVLVGFRRDLNL 292 (482)
T ss_dssp CSEEEEEEETTTTTGGGGHHHHHHHHHHHHTTEEETTTTCCSTTCTTEEEGGGT-SSBCCEEEEEEEEEGGGCC
T ss_pred CcEEEEeCcHHHhcccCCcHHHHHHHHHhcCCcEEEeccccCcccceeeecccc-CCccceEEEEEEEecCccc
Confidence 999999999999998888999999999999999996 679999999 9999999999999998754
No 12
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=100.00 E-value=5.4e-43 Score=375.00 Aligned_cols=164 Identities=21% Similarity=0.253 Sum_probs=133.6
Q ss_pred CCCCCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchHHHHHHHHHHHHHhhhh
Q 003974 257 IGQPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDFLSLLKEWAKLCQYF 336 (782)
Q Consensus 257 ~~~~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~~~~~~~~~~~~~~~~ 336 (782)
..+.++++|||||||||+++|| +.+|+++.++||+|+|+.|++||++|||++.++.+||.++.
T Consensus 12 ~~~~~~~vidLFaG~GG~~~g~----~~aG~~~~~v~a~E~d~~a~~ty~~N~~~~~~~~~DI~~i~------------- 74 (295)
T 2qrv_A 12 EKRKPIRVLSLFDGIATGLLVL----KDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRSVT------------- 74 (295)
T ss_dssp CCCCCEEEEEETCTTTHHHHHH----HHTTBCEEEEEEECCCHHHHHHHHHHTTTCEEEECCGGGCC-------------
T ss_pred ccCCCCEEEEeCcCccHHHHHH----HHCCCccceEEEEECCHHHHHHHHHhCCCCceeCCChHHcc-------------
Confidence 3567899999999999999999 78999986679999999999999999999888888876641
Q ss_pred cccCCCCCcccccccCchhhhhhhhhhhcccCCCCCCchhHHHHHHHHHhcCCCCCCCCCcceeEEeeccCCCCCCCccc
Q 003974 337 SIYDTDKVPEQSLNFMSEEEEEEEEEEEENDDDANVPNEEFEVERLIAVCYGDPNKTKKPGVYFKVRWKGYGPSEDTWEP 416 (782)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 416 (782)
.+++
T Consensus 75 -------------------------------------~~~i--------------------------------------- 78 (295)
T 2qrv_A 75 -------------------------------------QKHI--------------------------------------- 78 (295)
T ss_dssp -------------------------------------HHHH---------------------------------------
T ss_pred -------------------------------------HHHh---------------------------------------
Confidence 1111
Q ss_pred ccccchhhhhhHHhHhccccccCCCCCCCccEEEecCCchhhcccCcCCCCCccccccccchHHHHHHHHHHhCCc----
Q 003974 417 IKGLSKCKEKLKEFVTKGYRSNILPLPGDVDFICGGPPCQGVSGFNRFRNPQAALEDIKNRQLLVFMDVIEYLKPK---- 492 (782)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~vDvl~ggpPCQ~fS~ag~~~~~~~~~~d~r~~L~~~~~~ii~~~~P~---- 492 (782)
. ..+++|||+||||||+||.||+.+ .+.+|+|+.|+++++++|++++|+
T Consensus 79 -----------~-------------~~~~~Dll~ggpPCQ~fS~ag~~r---~g~~d~r~~L~~~~~rii~~~~P~~~~~ 131 (295)
T 2qrv_A 79 -----------Q-------------EWGPFDLVIGGSPCNDLSIVNPAR---KGLYEGTGRLFFEFYRLLHDARPKEGDD 131 (295)
T ss_dssp -----------H-------------HTCCCSEEEECCCCGGGBTTCTTC---CTTTSTTTTHHHHHHHHHHHHSCCTTCC
T ss_pred -----------c-------------ccCCcCEEEecCCCccccccCccc---cccccccchhHHHHHHHHHHhCcccccC
Confidence 0 014799999999999999998422 246899999999999999999999
Q ss_pred ---EEEeccccccccccccchHHHHHHHHhcCCcceEEEEEecccCCCCccccEEEEEEecC
Q 003974 493 ---YVLMENVVDILKFSGGFLARYAVGRLVSMDYQTRLGIMAAGSYGLPQFRLRVFLWGARP 551 (782)
Q Consensus 493 ---~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~ilnA~~yGvPQ~R~R~flig~~~ 551 (782)
+|+||||+||++..++ .+...|+. .+.+|||++|| ||+|+|+|| |.++
T Consensus 132 ~P~~~l~ENV~gl~~~~~~----~~~~~l~~-----~~~vl~a~~~~-PQ~R~R~~i-~~~~ 182 (295)
T 2qrv_A 132 RPFFWLFENVVAMGVSDKR----DISRFLES-----NPVMIDAKEVS-AAHRARYFW-GNLP 182 (295)
T ss_dssp CCCEEEEEEESSBCHHHHH----HHHHHHTS-----CCCCEEGGGTS-SBCCEEEEE-ECCT
T ss_pred CccEEEEEcCcchhhcCcc----HHHHHHhc-----CcEEeecceEC-CccCcEEEE-EEec
Confidence 9999999999987532 23334432 35789999996 999999998 7654
No 13
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=99.93 E-value=5.6e-27 Score=232.39 Aligned_cols=134 Identities=24% Similarity=0.320 Sum_probs=102.3
Q ss_pred cccceeeEEEECCEEEeeCCEEEEeeCC-CCccEEEEEeEEeecCCCceEEEEEEEEeccccccccccccCCCCeEEEeC
Q 003974 101 QARCHYTQASVDGCLYNLGDDAYVKAEE-GAVDYIARIVELFESVDGEPYFKARWFYRAEDTVIKDLACLVDRKRVFLSD 179 (782)
Q Consensus 101 ~~r~~Y~~~~v~G~~y~vGD~V~v~~~~-~~~~~Ia~I~~m~e~~~g~~~v~v~WfyRp~dtv~~~~~~~~~~rELFlS~ 179 (782)
+.+.||+++.++|.+|+|||||||.+++ ..++|||+|++||++.+|+++++|+|||||+||..+. .....+||||+|+
T Consensus 12 ~~r~~y~~~~~~g~~~~vGD~V~v~~~~~~~~p~I~rI~~i~~~~~g~~~v~v~WfyRPeet~~~~-~~~~~~~EvF~S~ 90 (174)
T 1w4s_A 12 LHRTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLA-TRKFLEKEVFKSD 90 (174)
T ss_dssp --------------CCCTTCEEEECCSSTTSCCEEEEEEEEEECTTCCEEEEEEEEECGGGSCCCT-TCEEETTEEEEEE
T ss_pred CCcEEeEEEEECCEEEECCCEEEEeCCCCCCCCEEEEEEEEEEcCCCCEEEEEEEecCHHHccccc-CCcCCCCeeEEeC
Confidence 4788999999999999999999999986 5789999999999999999999999999999997544 3345699999999
Q ss_pred CcCCccccccceeeEEEeeCCcchhhhhhcCCCCCceeeeccccCCCceeeecCCcC
Q 003974 180 VEDDNPLNCIVSKAKIAEVATNMDLEAKQKNIPPCDLYYDMKYTLPHLTFLNINNES 236 (782)
Q Consensus 180 ~~d~~~~~~I~gkc~V~~~~~~~~~~~~~~~~~~~~ffy~~~Y~~~~~~F~~lp~e~ 236 (782)
+++++|+++|+|||.|+..+++.+..+.. ......|||++.|++.+++|..++.-.
T Consensus 91 ~~d~~~~~~I~gkC~V~~~~~~~~~~p~~-~~~~dvF~c~~~Yd~~~~~f~~i~~w~ 146 (174)
T 1w4s_A 91 YYNKVPVSKILGKCVVMFVKEYFKLCPEN-FRDEDVYVCESRYSAKTKSFKKIKLWT 146 (174)
T ss_dssp EEEEEEGGGEEEEEEEEEHHHHTTEEETT-CCGGGEEEEEEEEETTTTEEEECSSCC
T ss_pred CcceecHHHeeeeEEEEECchhhhcCcCC-CCCCCEEEEeEEEccccCeEccCccCC
Confidence 99999999999999999998765543221 122345999999999999999999543
No 14
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=99.92 E-value=5.9e-26 Score=245.95 Aligned_cols=98 Identities=19% Similarity=0.227 Sum_probs=77.4
Q ss_pred CCccEEEecCCchhhcccCcCCCCCccccccccchHHHHHHHHHHhCCc-------EEEeccccccccccccchHHHHHH
Q 003974 444 GDVDFICGGPPCQGVSGFNRFRNPQAALEDIKNRQLLVFMDVIEYLKPK-------YVLMENVVDILKFSGGFLARYAVG 516 (782)
Q Consensus 444 ~~vDvl~ggpPCQ~fS~ag~~~~~~~~~~d~r~~L~~~~~~ii~~~~P~-------~~v~ENV~gl~~~~~~~~~~~i~~ 516 (782)
+++|||+||||||+||.|+ +|+.||++|+|||++++|+ +|+||||+||.+.. ...+..
T Consensus 236 ~~~DlliGG~PCQ~FS~A~-----------~Rg~Lf~ef~Riv~~~rPk~~~~~P~~fv~ENV~gL~~~~----~~~i~~ 300 (386)
T 2pv0_B 236 GPFDLVYGATPPLGHTCDR-----------PPSWYLFQFHRLLQYARPKPGSPGPFFWMFVDNLVLNKED----LDVASR 300 (386)
T ss_dssp CCCSEEEEECCCTTTCSCS-----------CTHHHHHHHHHHHHHHSCCSSCCSCCEEEEEECSCSCHHH----HHHHHH
T ss_pred CCCCEEEECCCCCcccccC-----------CcchHHHHHHHHHHHhCCCcccCCCcEEEEEechhhhhcc----hHHHHH
Confidence 4799999999999999874 4689999999999999998 99999999996433 122333
Q ss_pred HHhcCCcceEEEEEecccCCCCccccEEEEEEecCCCCCCCCCCCccc
Q 003974 517 RLVSMDYQTRLGIMAAGSYGLPQFRLRVFLWGARPFKKLPQYPLPTHE 564 (782)
Q Consensus 517 ~l~~~GY~v~~~ilnA~~yGvPQ~R~R~flig~~~~~~~p~~P~pth~ 564 (782)
.| + +.+.+|||++||+||+|+| +||.+++... .++.|||.
T Consensus 301 ~L-~----v~~~VLnA~dyGVPQrRrR--f~g~~~~~~~-~~~~p~~~ 340 (386)
T 2pv0_B 301 FL-E----MEPVTIPDVHGGSLQNAVR--VWSNIPAIRS-RHWALVSE 340 (386)
T ss_dssp HT-T----SCCCEEECCCSSSCCCEEE--EEECSSSSST-TCCTTSCH
T ss_pred HH-c----CCeEEEEccccCccccccE--EEEECCCcCC-cCCCCcCc
Confidence 33 2 5567999999999999999 5688776542 45566654
No 15
>2qrv_B DNA (cytosine-5)-methyltransferase 3-like; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=99.92 E-value=4.7e-26 Score=231.69 Aligned_cols=98 Identities=18% Similarity=0.175 Sum_probs=71.5
Q ss_pred CCccEEEecCCchhhcccCcCCCCCccccccccchHHHHHHHHHHhCCc-------EEEeccccccccccccchHHHHHH
Q 003974 444 GDVDFICGGPPCQGVSGFNRFRNPQAALEDIKNRQLLVFMDVIEYLKPK-------YVLMENVVDILKFSGGFLARYAVG 516 (782)
Q Consensus 444 ~~vDvl~ggpPCQ~fS~ag~~~~~~~~~~d~r~~L~~~~~~ii~~~~P~-------~~v~ENV~gl~~~~~~~~~~~i~~ 516 (782)
+++|||+||||||+||.+| +|+.||++|+|+|++++|+ +|+||||+||++... ..+..
T Consensus 80 ~~~DlliGG~PCQ~FS~ag-----------~rg~Lf~ef~Riv~~~rPk~~~~~P~~fv~ENV~gL~~~~~----~~i~~ 144 (230)
T 2qrv_B 80 GPFDLVYGATPPLGHTCDR-----------PPSWYLFQFHRLLQYARPKPGSPRPFFWMFVDNLVLNKEDL----DVASR 144 (230)
T ss_dssp CCCSEEEEECCCTTTSSCS-----------CTHHHHHHHHHHHHHHCCCSSCCSCCEEEEEECSCSCHHHH----HHHHH
T ss_pred CCCCEEEECCCCCcccccC-----------CCchHHHHHHHHHHHHCcCcccCCCcEEEEeccHHhhhccH----HHHHH
Confidence 4799999999999999886 2689999999999999999 899999999986542 22333
Q ss_pred HHhcCCcceEEEEEecccCCCCccccEEEEEEecCCCCCCCCCCCccc
Q 003974 517 RLVSMDYQTRLGIMAAGSYGLPQFRLRVFLWGARPFKKLPQYPLPTHE 564 (782)
Q Consensus 517 ~l~~~GY~v~~~ilnA~~yGvPQ~R~R~flig~~~~~~~p~~P~pth~ 564 (782)
.| + +.+.+|||++||+||+| |+| ||..++... .+..|+|.
T Consensus 145 ~l-~----~~~~vLnA~dfgvpQrR-r~f-~g~~~~~~~-~~~~p~~~ 184 (230)
T 2qrv_B 145 FL-E----MEPVTIPDVHGGSLQNA-VRV-WSNIPAIRS-RHWALVSE 184 (230)
T ss_dssp HH-T----SCCEECCCCCSCC-----CEE-EECSTTSST-TCCSCSCH
T ss_pred HH-c----CCcEEEEcccCCcCccc-EEE-EeecCCCCc-cccCCcCh
Confidence 33 3 34578999999999999 444 487776542 34455554
No 16
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=99.88 E-value=3e-22 Score=190.91 Aligned_cols=147 Identities=16% Similarity=0.332 Sum_probs=119.0
Q ss_pred CCCCceEcCCCcchhhhhccCccchhchhhHHHhhcccceeeEEEE--CC---EEEeeCCEEEEeeCCCCccEEEEEeEE
Q 003974 66 PDSDLFFVSPPVSADEALKRYPDRYKALNEEEEVLQARCHYTQASV--DG---CLYNLGDDAYVKAEEGAVDYIARIVEL 140 (782)
Q Consensus 66 ~~~~~~w~G~p~~~~~~~~~w~~ry~~~~~~~~~~~~r~~Y~~~~v--~G---~~y~vGD~V~v~~~~~~~~~Ia~I~~m 140 (782)
.+...+|+|+|+.+.. ..-.+|+++.+ .| .+++|||||||++++++.||||+|+.|
T Consensus 3 ~r~~ysW~g~~l~drk-------------------l~~~~Y~~~~v~~~~~~~~~i~vGd~VLI~~~D~~~PyVAki~~l 63 (163)
T 4dov_A 3 TRQTFSWVGRPLPNRK-------------------QFQQMYREICMKINDGSEIHIKVGQFVLIQGEDNKKPYVAKLIEL 63 (163)
T ss_dssp --CEEEEESCCCCCCC-------------------TTEEEESEEEEECTTSCEEEEETTCEEEECCSSSSCCEEEEEEEE
T ss_pred ceEEEEEeccCcCCCc-------------------ccceeeeEEEEecCCCCCeEEeeCCEEEEeCCcccCChhHHHHHH
Confidence 3457899999995552 22449999998 55 899999999999998778899999999
Q ss_pred eec---CCCceEEEEEEEEeccccccccc---cccCCCCeEEEeCCcC---CccccccceeeEEEeeCCcchhhhhhcCC
Q 003974 141 FES---VDGEPYFKARWFYRAEDTVIKDL---ACLVDRKRVFLSDVED---DNPLNCIVSKAKIAEVATNMDLEAKQKNI 211 (782)
Q Consensus 141 ~e~---~~g~~~v~v~WfyRp~dtv~~~~---~~~~~~rELFlS~~~d---~~~~~~I~gkc~V~~~~~~~~~~~~~~~~ 211 (782)
|++ ....+.++||||+|++|++.+.+ +...+.+|||+++|.+ ++++++|+|+|.|+..+++..++. ...
T Consensus 64 ye~~~e~~~~k~A~VQWy~R~~EiP~~k~~l~g~~~~~qEIF~~d~~~~d~~I~aeTIi~~c~V~~~~~~e~~p~--~~~ 141 (163)
T 4dov_A 64 FQNGAEVPPKKCARVQWFVRFLEIPVSKRHLLGRSPPAQEIFWYDCSDWDNKINVETIIGPVQVVALAPEEVIPV--DQK 141 (163)
T ss_dssp EEETTSSSCEEEEEEEEEEEGGGSCTTTGGGGCSCCCTTEEEEECCSCSCCEEEGGGEEEEEEEEECCTTCCCCS--SCC
T ss_pred HhccccCCCceEEEEEeeechhhccccchhhccCCCCCCeEEEecCCCCcccccHHHeeeceEEEEcCCccccCC--Ccc
Confidence 996 33468999999999999986653 3456799999999884 889999999999999998776643 345
Q ss_pred CCCceeeeccccCCCceeeecCCc
Q 003974 212 PPCDLYYDMKYTLPHLTFLNINNE 235 (782)
Q Consensus 212 ~~~~ffy~~~Y~~~~~~F~~lp~e 235 (782)
..+.||.++.||.+ +|.+|+++
T Consensus 142 ~e~t~FvklsWd~k--~f~pl~~~ 163 (163)
T 4dov_A 142 SEETLFVKLSWNKK--DFAPLPPE 163 (163)
T ss_dssp CCSEEEEEEEECSS--CEEECC--
T ss_pred cceEEEEEEEecCC--cceeCCCC
Confidence 67799999999965 99999864
No 17
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.72 E-value=1e-17 Score=203.20 Aligned_cols=137 Identities=21% Similarity=0.283 Sum_probs=114.7
Q ss_pred ccceeeEEEECCEEEeeCCEEEEeeCC------------------------------------------CCccEEEEEeE
Q 003974 102 ARCHYTQASVDGCLYNLGDDAYVKAEE------------------------------------------GAVDYIARIVE 139 (782)
Q Consensus 102 ~r~~Y~~~~v~G~~y~vGD~V~v~~~~------------------------------------------~~~~~Ia~I~~ 139 (782)
++.+|.++.++|++|+|||||||.++. .+|++||+|++
T Consensus 321 ~~~~~~~~~~~g~~y~vgD~Vyl~p~~~~f~~~~~~~~~~~~~~~vd~~~ype~yrk~~~~~kg~n~~~~~P~~IgrI~~ 400 (1002)
T 3swr_A 321 SRVLYYSATKNGILYRVGDGVYLPPEAFTFNIKLSSPVKRPRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKE 400 (1002)
T ss_dssp SCEEESEEEETTEEEETTCEEEECTTSCCCSSCCCCCCCCSCSCCCCTTTCTTSGGGHHHHHTCCCCCCCCCCEEEEEEE
T ss_pred CcEEEEEEEECCEEEecCCEEEECCcccccccccccccccccccccccccchhhhhccchhccccccCCCCCceeeEEeE
Confidence 467999999999999999999999932 23789999999
Q ss_pred EeecCCCc-------eEEEEEEEEecccccccc-ccccCCCCeEEEeCCcCCccccccceeeEEEeeCCcchhhhhhcCC
Q 003974 140 LFESVDGE-------PYFKARWFYRAEDTVIKD-LACLVDRKRVFLSDVEDDNPLNCIVSKAKIAEVATNMDLEAKQKNI 211 (782)
Q Consensus 140 m~e~~~g~-------~~v~v~WfyRp~dtv~~~-~~~~~~~rELFlS~~~d~~~~~~I~gkc~V~~~~~~~~~~~~~~~~ 211 (782)
||.++.+. .+|+|+|||||+||..+. ....+|.||||+|++.+++|+++|+|||.|++........+.....
T Consensus 401 i~~~~~~~~~~~~~~~~v~v~~fyRPed~~~~~~~~~~~D~~elf~S~~~~~~~~~~i~GkC~V~~~~d~~~~~~~~~~~ 480 (1002)
T 3swr_A 401 IFCPKKSNGRPNETDIKIRVNKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMG 480 (1002)
T ss_dssp EEECCCSSSSCCSSCCEEEEEECBCGGGSTTCGGGGSSSCTTEEEECCCEEEEEGGGCCEEEEEEEGGGCSSCHHHHHHT
T ss_pred EEecCCccccCCCccEEEEEEEEECcccccccccccccCCcceEEEecceeccCHHHcceEEEEEEeccccccchhhccC
Confidence 99776655 899999999999996433 3456799999999999999999999999999998765443323334
Q ss_pred CCCceeeeccccCCCceeeecCCcCCC
Q 003974 212 PPCDLYYDMKYTLPHLTFLNINNESNR 238 (782)
Q Consensus 212 ~~~~ffy~~~Y~~~~~~F~~lp~e~~~ 238 (782)
.+++|||.+.|++.+++|..+|.+...
T Consensus 481 ~p~~fyf~~~Yd~~~~~f~~~p~~~~~ 507 (1002)
T 3swr_A 481 GPNRFYFLEAYNAKSKSFEDPPNHARS 507 (1002)
T ss_dssp SSSEEEEEEEEETTTTEEECCCSTTSC
T ss_pred CCCeEEEEEEEeCCCCeeecCcccccc
Confidence 568899999999999999999977764
No 18
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.65 E-value=1.6e-16 Score=197.11 Aligned_cols=136 Identities=19% Similarity=0.242 Sum_probs=112.1
Q ss_pred ccceeeEEEECCEEEeeCCEEEEeeCC------------------------------------------CCccEEEEEeE
Q 003974 102 ARCHYTQASVDGCLYNLGDDAYVKAEE------------------------------------------GAVDYIARIVE 139 (782)
Q Consensus 102 ~r~~Y~~~~v~G~~y~vGD~V~v~~~~------------------------------------------~~~~~Ia~I~~ 139 (782)
++.||.+|.++|+.|+|||||||.++. ..|++||+|.+
T Consensus 633 ~~~~Y~~~~~~g~~Y~vgD~Vyl~p~~f~~~~~~~~~~~~~~~~~~~~~~ype~yrk~~~~~kg~~~~~~~Py~IgqI~e 712 (1330)
T 3av4_A 633 GRVYCSSITKNGVVYRLGDSVYLPPEAFTFNIKVASPVKRPKKDPVNETLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKE 712 (1330)
T ss_dssp SSEEEEEEEETTEEEETTCEEEECTTSCCCCCCC-------CCCCCCTTTCSSGGGGGC-------CCCCCCCEEEEEEE
T ss_pred CceeeeEEEECCEEEecCCEEEECcccccccccccccccccccccccccccchhhhcccccccccccCCCCCceEEEEEE
Confidence 477999999999999999999997751 24679999999
Q ss_pred EeecCC------CceEEEEEEEEeccccccccc-cccCCCCeEEEeCCcCCccccccceeeEEEeeCCcchhhhhhcCCC
Q 003974 140 LFESVD------GEPYFKARWFYRAEDTVIKDL-ACLVDRKRVFLSDVEDDNPLNCIVSKAKIAEVATNMDLEAKQKNIP 212 (782)
Q Consensus 140 m~e~~~------g~~~v~v~WfyRp~dtv~~~~-~~~~~~rELFlS~~~d~~~~~~I~gkc~V~~~~~~~~~~~~~~~~~ 212 (782)
||.+.+ +..+|+|+|||||+||..+.. ...++.||||+|++.+++|+++|.|||.|++..+............
T Consensus 713 I~~~~~s~~~~~~~~~vrV~wFyRPedt~~~~~~~~~~D~nELf~S~~~~~vp~~~I~GKC~V~~~~d~~~~i~~y~~~g 792 (1330)
T 3av4_A 713 IHCGKKKGKVNEADIKLRLYKFYRPENTHRSYNGSYHTDINMLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQDYSQGG 792 (1330)
T ss_dssp CCCCEETTEECSSCCEEEEEEEECTTTSTTGGGTTTTSCTTBCEEEEEEEEEEGGGCCEEEEEEESTTCSSCHHHHHHTS
T ss_pred EEecCCccccCCCceEEEEEEeeChhhcccccccccccCcceEEeeccceecCHHHcCceEEEEecccccccccccccCC
Confidence 998765 568999999999999975432 3467999999999999999999999999999987655311112233
Q ss_pred CCceeeeccccCCCceeeecCCcCC
Q 003974 213 PCDLYYDMKYTLPHLTFLNINNESN 237 (782)
Q Consensus 213 ~~~ffy~~~Y~~~~~~F~~lp~e~~ 237 (782)
++.|||.+.|++.+++|..+|...+
T Consensus 793 ~d~Fy~~~~Yd~~~k~~~~~P~~~~ 817 (1330)
T 3av4_A 793 PDRFYFLEAYNSKTKNFEDPPNHAR 817 (1330)
T ss_dssp TTEEEESCEEETTTTEEECCCGGGC
T ss_pred CCeEEEEEEecccCCeeccCchHhh
Confidence 6799999999999999998886554
No 19
>1m4z_A Origin recognition complex subunit 1; DNA replication, transcriptional silencing, chromatin, BAH D gene regulation; 2.20A {Saccharomyces cerevisiae} SCOP: b.34.12.1 PDB: 1zhi_A 1zbx_A
Probab=98.78 E-value=1.2e-08 Score=103.66 Aligned_cols=121 Identities=16% Similarity=0.093 Sum_probs=92.8
Q ss_pred ECCEEEeeCCEEEEeeCCCCccEEEEEeEEeecC-CCceEEEEEEEEeccccccc-----ccc---------cc------
Q 003974 111 VDGCLYNLGDDAYVKAEEGAVDYIARIVELFESV-DGEPYFKARWFYRAEDTVIK-----DLA---------CL------ 169 (782)
Q Consensus 111 v~G~~y~vGD~V~v~~~~~~~~~Ia~I~~m~e~~-~g~~~v~v~WfyRp~dtv~~-----~~~---------~~------ 169 (782)
.||..|++||+|+|..++.+-+.++-|..|--.. +.-.-+.|.||+|..|+... ..+ ..
T Consensus 48 ~Dg~~~~~GDsVlv~~~~~~sysv~LI~eIrl~t~~n~vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~~~~~~~~~ 127 (238)
T 1m4z_A 48 SDGIKLGRGDSVVMHNEAAGTYSVYMIQELRLNTLNNVVELWALTYLRWFEVNPLAHYRQFNPDANILNRPLNYYNKLFS 127 (238)
T ss_dssp TTCCEECTTCEEEEEETTTTEEEEEEEEEEEEETTTTEEEEEEEEEECGGGSCHHHHHHHHCHHHHHSCCCHHHHHHHHH
T ss_pred cCCcEEeCCCEEEEecCCCCceEEEEEEEEEecCCCceEEEEEEEeecHHHcCchhhhhhcCchhcccccchhhhhhhhh
Confidence 4799999999999988755555566665554332 33467889999999998531 111 12
Q ss_pred --CCCCeEEEeCCcCCccccccceeeEEEeeCCcchhhhhhcCCCCCceeeeccccCCCceeeecC
Q 003974 170 --VDRKRVFLSDVEDDNPLNCIVSKAKIAEVATNMDLEAKQKNIPPCDLYYDMKYTLPHLTFLNIN 233 (782)
Q Consensus 170 --~~~rELFlS~~~d~~~~~~I~gkc~V~~~~~~~~~~~~~~~~~~~~ffy~~~Y~~~~~~F~~lp 233 (782)
.+.+|||+|.+.+++-+.+|+++|+|+..+.+..+.. .....++|||+..+++.-..|.++.
T Consensus 128 ~~~~~nELflTa~l~eI~l~diI~~anVls~~Ef~~i~~--d~~~~~tFf~R~~cd~~~~~f~~iD 191 (238)
T 1m4z_A 128 ETANKNELYLTAELAELQLFNFIRVANVMDGSKWEVLKG--NVDPERDFTVRYICEPTGEKFVDIN 191 (238)
T ss_dssp HHSCTTEEEEEEEEEEECGGGEEEEEEEECHHHHHHHGG--GCCTTTEEEEEEECCTTSCCCEECC
T ss_pred cccccceEEEeccHHHHhHHhhhhheEeccHHHHhhhcc--ccccCceEEEEEEEcCCcCcccccc
Confidence 6899999999999999999999999999888776543 2366799999999999766677554
No 20
>2fl7_A Regulatory protein SIR3; ORC, silencing, chromatin, transcription; 1.85A {Saccharomyces cerevisiae} PDB: 2fvu_A 3tu4_K*
Probab=98.77 E-value=1.3e-08 Score=102.83 Aligned_cols=121 Identities=13% Similarity=0.090 Sum_probs=88.1
Q ss_pred ECCEEEeeCCEEEEeeCCCCccEEEEEeEEeecC-CCceEEEEEEEEeccccccc------ccc--------cc------
Q 003974 111 VDGCLYNLGDDAYVKAEEGAVDYIARIVELFESV-DGEPYFKARWFYRAEDTVIK------DLA--------CL------ 169 (782)
Q Consensus 111 v~G~~y~vGD~V~v~~~~~~~~~Ia~I~~m~e~~-~g~~~v~v~WfyRp~dtv~~------~~~--------~~------ 169 (782)
.||..|++||+|+|..++.+-+.++-|..|--.. +.-.-+.|.||+|..|+... ... ..
T Consensus 48 ~Dg~~~~~GDsVlv~~~~~~sysv~LI~eIrl~t~~n~vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~~~~~~~~~ 127 (232)
T 2fl7_A 48 SDGLSFGKGESVIFNDNVTETYSVYLIHEIRLNTLNNVVEIWVFSYLRWFELKPKLYYEQFRPDLIKEDHPLEFYKDKFF 127 (232)
T ss_dssp TTCCEECTTCEEEEEETTTTEEEEEEEEEEEC-----CCEEEEEEEECGGGSCHHHHHHHHCHHHHHTTCCHHHHHHHHH
T ss_pred cCCcEEeCCCEEEEecCCCCceEEEEEEEEEecCCCceEEEEEEEeecHHHcCchhhhhhcCchhcccccchhhhhhhhh
Confidence 4789999999999988755555566666654322 23468899999999998541 111 12
Q ss_pred --CCCCeEEEeCCcCCccccccceeeEEEeeCCcchhhhhhcCCCCCceeeeccccCCCceeeecC
Q 003974 170 --VDRKRVFLSDVEDDNPLNCIVSKAKIAEVATNMDLEAKQKNIPPCDLYYDMKYTLPHLTFLNIN 233 (782)
Q Consensus 170 --~~~rELFlS~~~d~~~~~~I~gkc~V~~~~~~~~~~~~~~~~~~~~ffy~~~Y~~~~~~F~~lp 233 (782)
.+.+|||+|.+.+++-+.+|+++|+|+..+.+..+.. .....++|||+..+++.-..|.++.
T Consensus 128 ~~~~~nELflTa~l~eI~l~diI~~anVls~~Ef~~l~~--d~~~~~tFf~R~~cd~~~~~f~~iD 191 (232)
T 2fl7_A 128 NEVNKSELYLTAELSEIWLKDFIAVGQILPESQWNDSSI--DKIEDRDFLVRYACEPTAEKFVPID 191 (232)
T ss_dssp HHSCTTEEEEEEEEEEECGGGEEEECEEECTTTC---------CTTTEEEEEEECCTTSCSCEECC
T ss_pred cccccceEEEeccHHHHHHHhhhhheEeccHHHHHHhcc--cccCCceEEEEEEEcCCcCcccccc
Confidence 6899999999999999999999999999998876533 2445699999999999766677554
No 21
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=98.51 E-value=5.6e-07 Score=97.72 Aligned_cols=97 Identities=19% Similarity=0.110 Sum_probs=61.5
Q ss_pred CCccEEEecCCchhhcccCcCCCCCccccccccchHHHHH-HHHHHhCCcEE-EeccccccccccccchHHHHHHHHhcC
Q 003974 444 GDVDFICGGPPCQGVSGFNRFRNPQAALEDIKNRQLLVFM-DVIEYLKPKYV-LMENVVDILKFSGGFLARYAVGRLVSM 521 (782)
Q Consensus 444 ~~vDvl~ggpPCQ~fS~ag~~~~~~~~~~d~r~~L~~~~~-~ii~~~~P~~~-v~ENV~gl~~~~~~~~~~~i~~~l~~~ 521 (782)
..+|+|+..|||.+.+..+. ..+.. ..+..++ .+.+.++|.-+ ++++.....- ....+...+...+...
T Consensus 224 ~~fD~Ii~dPP~~~~~~~~~-------~~~~~-~~~~~ll~~~~~~LkpgG~lli~~~~~~~~-~~~~~~~~l~~a~~~~ 294 (332)
T 2igt_A 224 STYDIILTDPPKFGRGTHGE-------VWQLF-DHLPLMLDICREILSPKALGLVLTAYSIRA-SFYSMHELMRETMRGA 294 (332)
T ss_dssp CCBSEEEECCCSEEECTTCC-------EEEHH-HHHHHHHHHHHHTBCTTCCEEEEEECCTTS-CHHHHHHHHHHHTTTS
T ss_pred CCceEEEECCccccCCchHH-------HHHHH-HHHHHHHHHHHHhcCcCcEEEEEECCCCCC-CHHHHHHHHHHHHHHc
Confidence 37899999999987663221 01100 1122333 34466788755 7777654321 1122333344467789
Q ss_pred CcceEEEEEecccCCCCcc-ccEEEEEEe
Q 003974 522 DYQTRLGIMAAGSYGLPQF-RLRVFLWGA 549 (782)
Q Consensus 522 GY~v~~~ilnA~~yGvPQ~-R~R~flig~ 549 (782)
||.+....+....+++||. +.|++.+|.
T Consensus 295 g~~v~~~e~~~p~~~~~q~~~~r~lp~g~ 323 (332)
T 2igt_A 295 GGVVASGELVIREAGLDGKTPGRVLSTSL 323 (332)
T ss_dssp CSEEEEEEEEEECCCSSSCCCCCEEEEEE
T ss_pred CCeEEEEEEecccCCcccccCCceeeeEE
Confidence 9999988888999999999 999887775
No 22
>2rso_A Chromatin-associated protein SWI6; chromodomain, silencing, chromosomal protein, Met transcription; NMR {Schizosaccharomyces pombe}
Probab=97.89 E-value=1.2e-06 Score=76.95 Aligned_cols=60 Identities=25% Similarity=0.614 Sum_probs=48.8
Q ss_pred CCCCchhHHHHHHHHHhcCCCCCCCCCcceeEEeeccCC-CCCCCcccccccchhhhhhHHhHhc
Q 003974 370 ANVPNEEFEVERLIAVCYGDPNKTKKPGVYFKVRWKGYG-PSEDTWEPIKGLSKCKEKLKEFVTK 433 (782)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (782)
.....++|+|+++++..+.. ..+.+.|.|.|+||. ++++||+|..+|.+|.++|.+|-..
T Consensus 24 ~~~~~eey~VE~Il~~r~~~----~~g~~~YlVkWkGy~~~~~~TWEP~~nl~~c~~li~~f~~~ 84 (92)
T 2rso_A 24 EEEEEDEYVVEKVLKHRMAR----KGGGYEYLLKWEGYDDPSDNTWSSEADCSGCKQLIEAYWNE 84 (92)
T ss_dssp CCCCCCCCCEEEEEEEEECT----TSSCEEEEEEETTCCCCTTSEEECGGGGGTSHHHHHHHHHH
T ss_pred ccCcCceEEEEEEEEEEeec----CCCEEEEEEEEccCCCcccCccccHHHHhhHHHHHHHHHHH
Confidence 34567789999998874321 235689999999998 6889999999999999999999765
No 23
>1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=97.88 E-value=1.5e-06 Score=72.41 Aligned_cols=61 Identities=34% Similarity=0.661 Sum_probs=48.1
Q ss_pred chhHHHHHHHHHhcCCCCCCCCCcce-eEEeeccCCCCCCCcccccccchhhhhhHHhHhccccccC
Q 003974 374 NEEFEVERLIAVCYGDPNKTKKPGVY-FKVRWKGYGPSEDTWEPIKGLSKCKEKLKEFVTKGYRSNI 439 (782)
Q Consensus 374 ~~~~~~~~~~~~~~g~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (782)
.++|+|+++++..... .+.+. +.|.|+||.++++||+|.++|.+|++.|.+|.....+...
T Consensus 6 ~~ey~VE~Il~~r~~~-----~g~~~~YlVKWkGy~~~~~TWEp~enL~~~~~li~~f~~~~~~~~~ 67 (70)
T 1g6z_A 6 QEEYEVERIVDEKLDR-----NGAVKLYRIRWLNYSSRSDTWEPPENLSGCSAVLAEWKRRKRRLKG 67 (70)
T ss_dssp SCSSCCCSCSEEECCT-----TSSCCEEEECCTTTTSSCCEEECGGGGSSCHHHHHHHHHHHTTTTC
T ss_pred CceEEEEEEEEEEEcC-----CCcEEEEEEEECCCCCCCCceecHHHHhhhHHHHHHHHHhcccccC
Confidence 3467777787764321 14577 9999999999999999999999999999999887655443
No 24
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=97.79 E-value=9.6e-05 Score=81.85 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=35.6
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
..-++||||||+|+++..+ ...|..-+ .|||+++.|++..+.|.
T Consensus 220 ~~~~VLDl~cG~G~~sl~l----a~~g~~~V--~~vD~s~~al~~a~~n~ 263 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSA----LMGGCSQV--VSVDTSQEALDIARQNV 263 (396)
T ss_dssp TTCEEEEESCTTCSHHHHH----HHTTCSEE--EEEESCHHHHHHHHHHH
T ss_pred CCCeEEEeeccCCHHHHHH----HHCCCCEE--EEEECCHHHHHHHHHHH
Confidence 3458999999999999888 45565323 59999999999998884
No 25
>2rsn_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, RNA-mediated gene SIL chromosomal protein, methylation; HET: M3L; NMR {Schizosaccharomyces pombe}
Probab=97.78 E-value=1.7e-06 Score=73.08 Aligned_cols=56 Identities=27% Similarity=0.519 Sum_probs=45.7
Q ss_pred CchhHHHHHHHHHhcCCCCCCCCCcceeEEeeccCCCCCCCcccccccchhhhhhHHhHhc
Q 003974 373 PNEEFEVERLIAVCYGDPNKTKKPGVYFKVRWKGYGPSEDTWEPIKGLSKCKEKLKEFVTK 433 (782)
Q Consensus 373 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (782)
+.++|+|+++++..+ ...+.+.+.|.|+||.++++||+|.++|.+|.++|++|-..
T Consensus 18 ~~e~yeVE~Il~~r~-----~~~g~~~YlVkWkGy~~~~~TWEp~~nl~~~~~li~~f~~~ 73 (75)
T 2rsn_A 18 DADVYEVEDILADRV-----NKNGINEYYIKWAGYDWYDNTWEPEQNLFGAEKVLKKWKKR 73 (75)
T ss_dssp GGGCEEEEEEEEEEE-----CSSSCEEEEEEEESSCGGGCEEEEGGGGTTTHHHHHHHHHH
T ss_pred CCceEEEEEEEEEEE-----cCCCcEEEEEEECCCCCcCCeeecHHHccChHHHHHHHHHh
Confidence 456788888887632 12345889999999999999999999999999999998643
No 26
>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural genomics consortium, S repeat, nucleus, cell cycle; 2.05A {Homo sapiens} SCOP: b.34.13.0 PDB: 3r93_A* 3svm_A* 3qo2_A*
Probab=97.59 E-value=1.7e-06 Score=70.29 Aligned_cols=52 Identities=50% Similarity=0.884 Sum_probs=42.2
Q ss_pred hHHHHHHHHHhcCCCCCCCCCcceeEEeeccCCCCCCCcccccccchhhhhhHHhHhc
Q 003974 376 EFEVERLIAVCYGDPNKTKKPGVYFKVRWKGYGPSEDTWEPIKGLSKCKEKLKEFVTK 433 (782)
Q Consensus 376 ~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (782)
+|+|+++++.. .....+.|.|.|+||.++++||+|.++|.+|++.|.+|-..
T Consensus 4 ~y~VE~Il~~r------~~~g~~~YlVkWkGy~~~~~TWEp~~nl~~~~~li~~f~~~ 55 (62)
T 3lwe_A 4 VFEVEKILDMK------TEGGKVLYKVRWKGYTSDDDTWEPEIHLEDCKEVLLEFRKK 55 (62)
T ss_dssp SCCEEEEEEEE------EETTEEEEEEEETTSCGGGCEEEEHHHHTTCHHHHHHHHHH
T ss_pred eEEEEEEEEEE------EcCCeEEEEEEEeCCCCcCCCeeeHhHhhccHHHHHHHHHh
Confidence 34555555542 33567899999999999999999999999999999999654
No 27
>4hae_A CDY-like 2, chromodomain Y-like protein 2; protein binding, structural genomics consortiu; 2.00A {Homo sapiens}
Probab=97.59 E-value=1e-06 Score=75.46 Aligned_cols=55 Identities=42% Similarity=0.785 Sum_probs=44.8
Q ss_pred CchhHHHHHHHHHhcCCCCCCCCCcceeEEeeccCCCCCCCcccccccchhhhhhHHhHh
Q 003974 373 PNEEFEVERLIAVCYGDPNKTKKPGVYFKVRWKGYGPSEDTWEPIKGLSKCKEKLKEFVT 432 (782)
Q Consensus 373 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (782)
+.+.|+|+++++... ..++.+.+.|.|+||.++++||+|.++|.+|.++|.+|-.
T Consensus 20 ~~e~yeVE~Ild~R~-----~~~g~~~YlVKWkGy~~~~~TWEp~~nl~~~~~li~~f~~ 74 (81)
T 4hae_A 20 SGDLYEVERIVDKRK-----NKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFNG 74 (81)
T ss_dssp TSCEEEEEEEEEEEE-----CTTSCEEEEEEETTCCGGGCEEEEGGGEEECCCCCCTTCS
T ss_pred CCCEEEEEEEEEeEE-----CCCCeEEEEEEECCCCCCCCeEEeHHHhhhhHHHHHHHHH
Confidence 456788888887532 2234588999999999999999999999999999998843
No 28
>3fdt_A Chromobox protein homolog 5; chromobox homolog5, CBX5, structural GENO structural genomics consortium, SGC, centromere, nucleus, phosphoprotein; HET: M3L; 2.00A {Homo sapiens}
Probab=97.50 E-value=3.1e-06 Score=68.08 Aligned_cols=51 Identities=37% Similarity=0.782 Sum_probs=39.9
Q ss_pred hHHHHHHHHHhcCCCCCCCCCcceeEEeeccCCCCCCCcccccccchhhhhhHHhHhc
Q 003974 376 EFEVERLIAVCYGDPNKTKKPGVYFKVRWKGYGPSEDTWEPIKGLSKCKEKLKEFVTK 433 (782)
Q Consensus 376 ~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (782)
+|+|+++++.. ..++.+.|.|.|+||.++++||+|.++| +|++.|.+|...
T Consensus 3 ey~VE~Il~~r------~~~g~~~YlVkWkGy~~~~~TWEp~~nl-~~~~li~~f~~~ 53 (59)
T 3fdt_A 3 EYVVEKVLDRR------VVKGQVEYLLKWKGFSEEHNTWEPEKNL-DCPELISEFMKK 53 (59)
T ss_dssp EEEEEEEEEEE------EETTEEEEEEEETTSCGGGCEEEEGGGE-ECHHHHHHHHC-
T ss_pred eEEEEEEEEEE------EeCCeEEEEEEEeCCCcccCCccchhHC-CCHHHHHHHHHh
Confidence 34445555442 2346789999999999999999999999 799999999754
No 29
>3f2u_A Chromobox protein homolog 1; human chromobox homolog 1, CBX1, structural genomics, struct genomics consortium, SGC, centromere, nucleus; 1.80A {Homo sapiens} PDB: 3tzd_A* 2l11_A* 3dm1_A*
Probab=97.47 E-value=4.3e-06 Score=66.29 Aligned_cols=38 Identities=34% Similarity=0.879 Sum_probs=34.0
Q ss_pred CCcceeEEeeccCCCCCCCcccccccchhhhhhHHhHhc
Q 003974 395 KPGVYFKVRWKGYGPSEDTWEPIKGLSKCKEKLKEFVTK 433 (782)
Q Consensus 395 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (782)
++.+.+.|.|+||.++++||+|.++| +|+++|.+|...
T Consensus 15 ~g~~~YlVkWkGy~~~~~TWEp~~nl-~~~~li~~f~~~ 52 (55)
T 3f2u_A 15 KGKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEFLQS 52 (55)
T ss_dssp TTEEEEEEEETTSCGGGCEEEEGGGC-CCHHHHHHHHC-
T ss_pred CCeEEEEEEEEeCCCccCCeeEHHHC-CCHHHHHHHHHH
Confidence 46789999999999999999999999 799999999654
No 30
>2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2
Probab=97.30 E-value=2.6e-05 Score=63.75 Aligned_cols=53 Identities=26% Similarity=0.532 Sum_probs=42.7
Q ss_pred chhHHHHHHHHHhcCCCCCCCCCcceeEEeeccCCCCCCCcccccccchhhhhhHHhHhc
Q 003974 374 NEEFEVERLIAVCYGDPNKTKKPGVYFKVRWKGYGPSEDTWEPIKGLSKCKEKLKEFVTK 433 (782)
Q Consensus 374 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (782)
.++|+|+++++.. ..+..+.+.|.|+||.++++||+|.++|..+ ++|.+|...
T Consensus 8 ~~ey~VE~Il~~r------~~~g~~~YlVKWkGy~~~~~TWEp~~~l~~~-~li~~f~~~ 60 (64)
T 2dnv_A 8 ERVFAAEALLKRR------IRKGRMEYLVKWKGWSQKYSTWEPEENILDA-RLLAAFESG 60 (64)
T ss_dssp CCCCCCCCEEEEE------ESSSSEEEEECCSSCCCSSCCEEETTTCCCH-HHHHHHHCC
T ss_pred CceEEEEEEEEEE------EeCCcEEEEEEECCCCcccCCccCHhHCCCH-HHHHHHHHH
Confidence 3567777787763 3456789999999999999999999999874 889988543
No 31
>1q3l_A Heterochromatin protein 1; chromodomain, HP1, chromatin, methyllysine, monomethyllysine, structural protein; HET: MLZ; 1.64A {Drosophila melanogaster} SCOP: b.34.13.2 PDB: 1kne_A* 1kna_A*
Probab=97.29 E-value=8.9e-06 Score=67.37 Aligned_cols=53 Identities=34% Similarity=0.790 Sum_probs=42.3
Q ss_pred chhHHHHHHHHHhcCCCCCCCCCcceeEEeeccCCCCCCCcccccccchhhhhhHHhHhc
Q 003974 374 NEEFEVERLIAVCYGDPNKTKKPGVYFKVRWKGYGPSEDTWEPIKGLSKCKEKLKEFVTK 433 (782)
Q Consensus 374 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (782)
.++|+|+++++.. ..++.+.+.|.|+||.++++||+|.++| +|++.|.+|...
T Consensus 14 ~~ey~VEkIld~R------~~~g~~eYlVKWkGy~~~~~TWEp~enL-~c~~lI~~F~~~ 66 (69)
T 1q3l_A 14 EEEYAVEKIIDRR------VRKGMVEYYLKWKGYPETENTWEPENNL-DCQDLIQQYEAS 66 (69)
T ss_dssp --CEEEEEEEEEE------EETTEEEEEEEETTSCGGGCEEEEGGGE-ECHHHHHHHHHH
T ss_pred CCcEEEEEEEEEE------EECCeEEEEEEEcCCCcccCCccchHHC-CCHHHHHHHHHH
Confidence 3456677777653 3356789999999999999999999999 799999999654
No 32
>1ap0_A Modifier protein 1; chromatin-binding, protein interaction motif, alpha+beta; NMR {Mus musculus} SCOP: b.34.13.2 PDB: 1guw_A*
Probab=97.27 E-value=2.6e-05 Score=65.45 Aligned_cols=53 Identities=32% Similarity=0.746 Sum_probs=43.9
Q ss_pred chhHHHHHHHHHhcCCCCCCCCCcceeEEeeccCCCCCCCcccccccchhhhhhHHhHhc
Q 003974 374 NEEFEVERLIAVCYGDPNKTKKPGVYFKVRWKGYGPSEDTWEPIKGLSKCKEKLKEFVTK 433 (782)
Q Consensus 374 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (782)
.++|+|+++++... .++.+.|.|.|+||.++++||+|.++| +|++.|.+|...
T Consensus 11 ~~ey~VE~Il~~r~------~~g~~~YlVKWkGy~~~~~TWEp~~nL-~~~~li~~f~~~ 63 (73)
T 1ap0_A 11 EEEYVVEKVLDRRV------VKGKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEFLQS 63 (73)
T ss_dssp SSCCEEEEEEEEEE------CSSSEEEEEEEESSSSCCCEEEETTTC-CCHHHHHHHTTT
T ss_pred CceEEEEEEEEEEE------eCCeEEEEEEECCCCCccCcEeeHHHC-CCHHHHHHHHHH
Confidence 35677778877643 356789999999999999999999999 699999999654
No 33
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=97.27 E-value=0.00089 Score=66.32 Aligned_cols=45 Identities=29% Similarity=0.319 Sum_probs=36.4
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPE 311 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~ 311 (782)
..++||++||.|+++..+ ...|..- +.|+|+++.+++..+.|...
T Consensus 50 ~~~vlD~g~G~G~~~~~l----~~~~~~~--v~~vD~~~~~~~~a~~~~~~ 94 (207)
T 1wy7_A 50 GKVVADLGAGTGVLSYGA----LLLGAKE--VICVEVDKEAVDVLIENLGE 94 (207)
T ss_dssp TCEEEEETCTTCHHHHHH----HHTTCSE--EEEEESCHHHHHHHHHHTGG
T ss_pred cCEEEEeeCCCCHHHHHH----HHcCCCE--EEEEECCHHHHHHHHHHHHH
Confidence 458999999999999887 3456542 35999999999999998753
No 34
>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2
Probab=97.27 E-value=3.3e-05 Score=65.69 Aligned_cols=57 Identities=39% Similarity=0.760 Sum_probs=46.1
Q ss_pred CchhHHHHHHHHHhcCCCCCCCCCcceeEEeeccCCCCCCCcccccccchhhhhhHHhHhcc
Q 003974 373 PNEEFEVERLIAVCYGDPNKTKKPGVYFKVRWKGYGPSEDTWEPIKGLSKCKEKLKEFVTKG 434 (782)
Q Consensus 373 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (782)
+.++|+|+++++... .....+.|.|.|+||.++++||+|.++|.+|.+.|.+|....
T Consensus 10 ~~~~y~VE~Il~~r~-----~~~g~~~YlVKWkGy~~~~~TWEp~~~l~~~~~li~~f~~~~ 66 (78)
T 2dnt_A 10 SEELYEVERIVDKRK-----NKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRH 66 (78)
T ss_dssp SSCSCCCCCEEEEEE-----CTTSCEEEEECBTTBCGGGCEEEETTTCTTCHHHHHHHHHHH
T ss_pred CCceEEEEEEEEEEE-----cCCCcEEEEEEECCCCccCCceecHHHHHhHHHHHHHHHhhh
Confidence 345677888877632 123468999999999999999999999999999999998764
No 35
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=97.24 E-value=0.0029 Score=61.17 Aligned_cols=52 Identities=23% Similarity=0.271 Sum_probs=41.1
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccc
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEA 318 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d 318 (782)
+..++||+.||.|.++.-| ...|.++ .++|+++.+++..+.|.++..++..|
T Consensus 46 ~~~~vLdiG~G~G~~~~~l----~~~~~~v---~~~D~~~~~~~~a~~~~~~~~~~~~d 97 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYL----SKQGHDV---LGTDLDPILIDYAKQDFPEARWVVGD 97 (195)
T ss_dssp TTCEEEEETCTTTHHHHHH----HHTTCEE---EEEESCHHHHHHHHHHCTTSEEEECC
T ss_pred CCCeEEEECCCCCHHHHHH----HHCCCcE---EEEcCCHHHHHHHHHhCCCCcEEEcc
Confidence 4469999999999998877 3457765 49999999999999998775554433
No 36
>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, silencing, cell cycle, chromosome partition, DNA-binding, nucleus; HET: M3L; 2.20A {Schizosaccharomyces pombe}
Probab=97.19 E-value=1.6e-05 Score=64.31 Aligned_cols=53 Identities=32% Similarity=0.591 Sum_probs=41.6
Q ss_pred chhHHHHHHHHHhcCCCCCCCCCcc-eeEEeeccCCCCCCCcccccccchhhhhhHHhHhc
Q 003974 374 NEEFEVERLIAVCYGDPNKTKKPGV-YFKVRWKGYGPSEDTWEPIKGLSKCKEKLKEFVTK 433 (782)
Q Consensus 374 ~~~~~~~~~~~~~~g~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (782)
.++|+|+++++... .+.++ .|.|.|+||.++++||+|.++|. |++.|.+|...
T Consensus 5 ~~ey~VE~Il~~r~------~~g~~~~YlVkWkGy~~~~~TWEp~~nl~-~~~li~~~~~~ 58 (61)
T 3g7l_A 5 ADVYEVEDILADRV------NKNGINEYYIKWAGYDWYDNTWEPEQNLF-GAEKVLKKWKK 58 (61)
T ss_dssp CCEEEEEEEEEEEE------CTTSCEEEEEEETTSCGGGCEEEEGGGGT-BCHHHHHHHHH
T ss_pred CcEEEEEEEEEEEE------ECCCEEEEEEEEeCCCCcCCceeeHhHCC-CHHHHHHHHHH
Confidence 34677777776632 34555 89999999999999999999994 88888888654
No 37
>2k1b_A Chromobox protein homolog 7; alpha/beta protein, chromatin regulator, nucleus, repressor, transcription, transcription regulation; NMR {Homo sapiens} PDB: 2l12_A* 2l1b_A*
Probab=97.19 E-value=1.8e-05 Score=66.26 Aligned_cols=52 Identities=27% Similarity=0.509 Sum_probs=42.5
Q ss_pred chhHHHHHHHHHhcCCCCCCCCCcceeEEeeccCCCCCCCcccccccchhhhhhHHhHh
Q 003974 374 NEEFEVERLIAVCYGDPNKTKKPGVYFKVRWKGYGPSEDTWEPIKGLSKCKEKLKEFVT 432 (782)
Q Consensus 374 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (782)
.++|+|+++++.. ..++.+.+.|.|+||.++++||+|.++|. |++.|.+|..
T Consensus 19 ~~eyeVEkIld~r------~~~g~~~YlVKWkGy~~~~~TWEp~enL~-~~~li~~F~~ 70 (73)
T 2k1b_A 19 EQVFAVESIRKKR------VRKGKVEYLVKWKGWPPKYSTWEPEEHIL-DPRLVMAYEE 70 (73)
T ss_dssp CCCCCCSEEEEEE------EETTEEEEEEECTTCCGGGCCEEETTSCS-CHHHHHHHHT
T ss_pred CceEEEEEEEEEE------EcCCcEEEEEEECCCCcccCeecchHHCC-CHHHHHHHHH
Confidence 3567777887763 34567899999999999999999999997 6888998854
No 38
>1pdq_A Polycomb protein; methyllysine, chromodomain, polycomb, lysine methylation, trimethyllysine, cation-PI, chromo, structural protein; HET: M3L; 1.76A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=97.16 E-value=1.5e-05 Score=66.59 Aligned_cols=52 Identities=25% Similarity=0.524 Sum_probs=42.5
Q ss_pred chhHHHHHHHHHhcCCCCCCCCCcceeEEeeccCCCCCCCcccccccchhhhhhHHhHh
Q 003974 374 NEEFEVERLIAVCYGDPNKTKKPGVYFKVRWKGYGPSEDTWEPIKGLSKCKEKLKEFVT 432 (782)
Q Consensus 374 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (782)
.++|+|+++++.. ..++.+.+.|.|+||.++++||+|.++|. |++.|.+|..
T Consensus 18 ~~eyeVEkIld~r------~~~g~~~YlVKWkGy~~~~nTWEP~enL~-~~~lI~~F~~ 69 (72)
T 1pdq_A 18 DLVYAAEKIIQKR------VKKGVVEYRVKWKGWNQRYNTWEPEVNIL-DRRLIDIYEQ 69 (72)
T ss_dssp CEEEEEEEEEEEE------EETTEEEEEEEETTSCGGGCEEEEGGGCC-STHHHHHHC-
T ss_pred CceEEEEEEEEEE------EeCCcEEEEEEECCCCCccCeecchHHCC-CHHHHHHHHH
Confidence 4567788887763 34567899999999999999999999996 7888998843
No 39
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=97.11 E-value=0.0024 Score=66.82 Aligned_cols=57 Identities=23% Similarity=0.247 Sum_probs=40.3
Q ss_pred CCcceeccccccchhHHHHHHhhhhcC-CceeeEEEEecCHHHHHHHHHhC-----CCCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSG-VKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG-~~~~~~~ave~~~~a~~t~~~N~-----p~~~~~~~d~~~ 321 (782)
+..++||++||.||.++-|.. ...| .++ .|+|+++.+++..+.|. ++..+++.|+.+
T Consensus 83 ~g~~VLDlgaG~G~~t~~la~--~~~~~~~v---~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~ 145 (274)
T 3ajd_A 83 EDDFILDMCAAPGGKTTHLAQ--LMKNKGTI---VAVEISKTRTKALKSNINRMGVLNTIIINADMRK 145 (274)
T ss_dssp TTCEEEETTCTTCHHHHHHHH--HTTTCSEE---EEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHH
T ss_pred CcCEEEEeCCCccHHHHHHHH--HcCCCCEE---EEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHh
Confidence 345899999999999987742 2234 333 59999999999988873 344555555544
No 40
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=97.00 E-value=0.0017 Score=68.22 Aligned_cols=43 Identities=26% Similarity=0.362 Sum_probs=34.7
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
.-++||+|||.|+++.-+ ...|..- +.|+|+++.|++..+.|.
T Consensus 126 ~~~VLDlgcG~G~~~~~l----a~~~~~~--V~~vD~s~~~~~~a~~n~ 168 (278)
T 2frn_A 126 DELVVDMFAGIGHLSLPI----AVYGKAK--VIAIEKDPYTFKFLVENI 168 (278)
T ss_dssp TCEEEETTCTTTTTHHHH----HHHTCCE--EEEECCCHHHHHHHHHHH
T ss_pred CCEEEEecccCCHHHHHH----HHhCCCE--EEEEECCHHHHHHHHHHH
Confidence 458999999999999887 4456542 259999999999998874
No 41
>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.92 E-value=8e-05 Score=62.65 Aligned_cols=54 Identities=22% Similarity=0.543 Sum_probs=44.1
Q ss_pred chhHHHHHHHHHhcCCCCCCCCCcceeEEeeccCCCCCCCcccccccchhhhhhHHhHhcc
Q 003974 374 NEEFEVERLIAVCYGDPNKTKKPGVYFKVRWKGYGPSEDTWEPIKGLSKCKEKLKEFVTKG 434 (782)
Q Consensus 374 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (782)
.++|+|+++++.. ..+..+.+.|.|+||.++++||+|.++|.+ ++.|.+|....
T Consensus 8 ~~ey~VE~Il~~r------~~~g~~~YlVKWkGy~~~~~TWEp~~nl~~-~~li~~f~~~~ 61 (74)
T 2d9u_A 8 EQVFAAECILSKR------LRKGKLEYLVKWRGWSSKHNSWEPEENILD-PRLLLAFQKKE 61 (74)
T ss_dssp CCCCCEEEEEEEE------EETTEEEEEEEETTSCTTTCEEEEGGGCCC-HHHHHHHHHHH
T ss_pred CccEEEEEEEEEE------EeCCcEEEEEEECCCCCccCccccHHHCCC-HHHHHHHHHhh
Confidence 4567777887763 335678999999999999999999999986 58899997764
No 42
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=96.84 E-value=0.0039 Score=68.97 Aligned_cols=43 Identities=26% Similarity=0.313 Sum_probs=35.6
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
+.-++||||||.|+++.-+ ...|.. + .|||+++.|++..+.|.
T Consensus 214 ~g~~VLDlg~GtG~~sl~~----a~~ga~-V--~avDis~~al~~a~~n~ 256 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRA----ARKGAY-A--LAVDKDLEALGVLDQAA 256 (393)
T ss_dssp TTCEEEEESCTTTHHHHHH----HHTTCE-E--EEEESCHHHHHHHHHHH
T ss_pred CCCeEEEcccchhHHHHHH----HHcCCe-E--EEEECCHHHHHHHHHHH
Confidence 3568999999999999877 456777 3 59999999999888874
No 43
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=96.82 E-value=0.0036 Score=69.00 Aligned_cols=56 Identities=14% Similarity=0.179 Sum_probs=40.2
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC-------CCcccccchHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP-------ETKVRNEAADDF 322 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p-------~~~~~~~d~~~~ 322 (782)
.-++||||||.|+++.-+ ...|..-+ .+||+++.|++..+.|.. +..++.+|+.++
T Consensus 213 ~~~VLDl~cGtG~~sl~l----a~~ga~~V--~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~ 275 (385)
T 2b78_A 213 GKTVLNLFSYTAAFSVAA----AMGGAMAT--TSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDY 275 (385)
T ss_dssp TCEEEEETCTTTHHHHHH----HHTTBSEE--EEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHH
T ss_pred CCeEEEEeeccCHHHHHH----HHCCCCEE--EEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHH
Confidence 358999999999998877 34565423 599999999998888742 344555555443
No 44
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=96.75 E-value=0.0015 Score=66.38 Aligned_cols=43 Identities=26% Similarity=0.434 Sum_probs=35.8
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
...++||++||.|+++..| ...|.++ .|+|+++.+++..+.|.
T Consensus 78 ~~~~vLD~gcG~G~~~~~l----a~~~~~v---~~vD~s~~~~~~a~~~~ 120 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQF----ALTGMRV---IAIDIDPVKIALARNNA 120 (241)
T ss_dssp CCSEEEETTCTTSHHHHHH----HHTTCEE---EEEESCHHHHHHHHHHH
T ss_pred CCCEEEECccccCHHHHHH----HHcCCEE---EEEECCHHHHHHHHHHH
Confidence 3468999999999999888 4567654 49999999999988875
No 45
>3i91_A Chromobox protein homolog 8; chromobox homolog 8, CBX8, structural genomics structural genomics consortium, SGC, chromatin regulator, N phosphoprotein, repressor; HET: M3L; 1.55A {Homo sapiens} SCOP: b.34.13.2 PDB: 3gv6_A* 3i90_A*
Probab=96.74 E-value=0.00055 Score=53.81 Aligned_cols=38 Identities=29% Similarity=0.600 Sum_probs=33.4
Q ss_pred CCCcceeEEeeccCCCCCCCcccccccchhhhhhHHhHh
Q 003974 394 KKPGVYFKVRWKGYGPSEDTWEPIKGLSKCKEKLKEFVT 432 (782)
Q Consensus 394 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (782)
.++.+.+.|.|+||.++++||+|.++|. |+++|.+|..
T Consensus 15 ~~g~~~YlVkWkGy~~~~~TWEp~~nl~-~~~li~~f~~ 52 (54)
T 3i91_A 15 RKGRMEYLVKWKGWSQKYSTWEPEENIL-DARLLAAFEE 52 (54)
T ss_dssp ETTEEEEEEEETTSCGGGCEEEEGGGBC-CHHHHHHHHH
T ss_pred eCCcEEEEEEEeCCCcccCcccchhHCC-CHHHHHHHHh
Confidence 3567899999999999999999999998 6888998854
No 46
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=96.74 E-value=0.0037 Score=61.62 Aligned_cols=50 Identities=28% Similarity=0.310 Sum_probs=39.0
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccc
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRN 316 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~ 316 (782)
..++||++||.|.++..+ ...|..- +.+||+++.+++..+.|.++..++.
T Consensus 52 ~~~vlD~gcG~G~~~~~l----~~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~ 101 (200)
T 1ne2_A 52 GRSVIDAGTGNGILACGS----YLLGAES--VTAFDIDPDAIETAKRNCGGVNFMV 101 (200)
T ss_dssp TSEEEEETCTTCHHHHHH----HHTTBSE--EEEEESCHHHHHHHHHHCTTSEEEE
T ss_pred CCEEEEEeCCccHHHHHH----HHcCCCE--EEEEECCHHHHHHHHHhcCCCEEEE
Confidence 458999999999999887 3446542 3599999999999999987444444
No 47
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=96.67 E-value=0.014 Score=60.19 Aligned_cols=44 Identities=20% Similarity=0.188 Sum_probs=34.1
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
...++||+.||+|+++.-+ ...+-. .+.|||+++.+++..+.|.
T Consensus 49 ~~~~vLDlG~G~G~~~~~l----a~~~~~--~v~gvDi~~~~~~~a~~n~ 92 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLL----STRTKA--KIVGVEIQERLADMAKRSV 92 (259)
T ss_dssp SCCEEEETTCTTTHHHHHH----HTTCCC--EEEEECCSHHHHHHHHHHH
T ss_pred CCCEEEEcCCchhHHHHHH----HHhcCC--cEEEEECCHHHHHHHHHHH
Confidence 3468999999999998877 333432 2369999999999888875
No 48
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens}
Probab=96.66 E-value=0.00067 Score=55.27 Aligned_cols=38 Identities=42% Similarity=0.926 Sum_probs=34.1
Q ss_pred CCcceeEEeeccCCCCCCCcccccccchhhhhhHHhHhc
Q 003974 395 KPGVYFKVRWKGYGPSEDTWEPIKGLSKCKEKLKEFVTK 433 (782)
Q Consensus 395 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (782)
+..+.|.|.|+||.++++||+|.++|. |++.|.+|...
T Consensus 13 ~g~~~YlVKWkGy~~~~~TWEp~~nl~-c~~li~~f~~~ 50 (64)
T 3mts_A 13 REQEYYLVKWRGYPDSESTWEPRQNLK-CVRILKQFHKD 50 (64)
T ss_dssp SSCEEEEEEETTSCGGGCEEEEGGGCC-CHHHHHHHHHH
T ss_pred CCeEEEEEEEecCCCcCCcEeEHHHCC-CHHHHHHHHHH
Confidence 457899999999999999999999995 99999999654
No 49
>2kvm_A Chromobox protein homolog 7; histone modification, lysine methylation, chromobox, polycom chromatin-binding; HET: MLY; NMR {Mus musculus}
Probab=96.63 E-value=9.8e-05 Score=62.10 Aligned_cols=52 Identities=29% Similarity=0.524 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHhcCCCCCCCCCcceeEEeeccCCCCCCCcccccccchhhhhhHHhHhc
Q 003974 375 EEFEVERLIAVCYGDPNKTKKPGVYFKVRWKGYGPSEDTWEPIKGLSKCKEKLKEFVTK 433 (782)
Q Consensus 375 ~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (782)
++|+|+++++.. ..+..+.+.|.|+||.++++||+|.++|. |++.|.+|...
T Consensus 12 ~~y~VE~Il~~r------~~~g~~~YlVKWkGy~~~~~TWEp~~~L~-~~~li~~f~~~ 63 (74)
T 2kvm_A 12 QVFAVESIRKKR------VRKGKVEYLVKWKGWPPKYSTWEPEEHIL-DPRLVMAYEEK 63 (74)
T ss_dssp CCCCEEEEEEEE------EETTEEEEEEEETTSCGGGCEEEETTTCS-CHHHHHHHHHH
T ss_pred ccEEEEEEEEEE------EeCCcEEEEEEEcCCCCccCeEeeHHHCC-CHHHHHHHHHH
Confidence 456677777653 34567899999999999999999999998 46889988654
No 50
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=96.58 E-value=0.0095 Score=65.42 Aligned_cols=56 Identities=21% Similarity=0.171 Sum_probs=40.0
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC-----CCCcccccchHHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADDF 322 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~-----p~~~~~~~d~~~~ 322 (782)
..-++||+|||.|+++.-+. .. +.++ .+||+++.|++..+.|. .+..++.+|+.++
T Consensus 209 ~~~~VLDlg~G~G~~~~~la---~~-~~~v---~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~ 269 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLA---LG-FREV---VAVDSSAEALRRAEENARLNGLGNVRVLEANAFDL 269 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHH---HH-EEEE---EEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHH
T ss_pred CCCeEEEeeeccCHHHHHHH---Hh-CCEE---EEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHH
Confidence 34589999999999998773 22 3333 59999999999988874 2344555555444
No 51
>3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2, structural genomics, structural genomics consortium, SGC, chromatin regulator, D binding, nucleus; HET: M3L; 1.50A {Homo sapiens} SCOP: b.34.13.2 PDB: 2k28_A 3i8z_A
Probab=96.57 E-value=0.0008 Score=52.90 Aligned_cols=38 Identities=24% Similarity=0.623 Sum_probs=32.8
Q ss_pred CCCcceeEEeeccCCCCCCCcccccccchhhhhhHHhHh
Q 003974 394 KKPGVYFKVRWKGYGPSEDTWEPIKGLSKCKEKLKEFVT 432 (782)
Q Consensus 394 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (782)
.++.+.+.|.|+||.++++||+|.++|. |++.|.+|-.
T Consensus 15 ~~g~~~YlVkWkGy~~~~~TWEp~~nl~-~~~li~~f~~ 52 (54)
T 3h91_A 15 RKGKLEYLVKWRGWSSKHNSWEPEENIL-DPRLLLAFQK 52 (54)
T ss_dssp ETTEEEEEEEETTSCGGGCEEEEGGGBC-SHHHHHHHHC
T ss_pred eCCcEEEEEEEeCCCCcCCCeecHhHCC-CHHHHHHHHh
Confidence 3567899999999999999999999998 4788888853
No 52
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=96.54 E-value=0.0025 Score=67.21 Aligned_cols=43 Identities=26% Similarity=0.362 Sum_probs=33.8
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
.-++||+|||+|+++.-+ ...|..- ++|+|+|+.|++.++.|.
T Consensus 126 g~~VlD~~aG~G~~~i~~----a~~g~~~--V~avD~np~a~~~~~~N~ 168 (278)
T 3k6r_A 126 DELVVDMFAGIGHLSLPI----AVYGKAK--VIAIEKDPYTFKFLVENI 168 (278)
T ss_dssp TCEEEETTCTTTTTTHHH----HHHTCCE--EEEECCCHHHHHHHHHHH
T ss_pred CCEEEEecCcCcHHHHHH----HHhcCCe--EEEEECCHHHHHHHHHHH
Confidence 358999999999998766 3345322 269999999999999984
No 53
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=96.48 E-value=0.0068 Score=66.87 Aligned_cols=44 Identities=27% Similarity=0.432 Sum_probs=35.2
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
..-++||||||.|+++.-+ ...|..-+ .+||+++.|++..+.|.
T Consensus 217 ~~~~VLDl~~G~G~~~~~l----a~~g~~~v--~~vD~s~~~l~~a~~n~ 260 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHA----AIAGADEV--IGIDKSPRAIETAKENA 260 (396)
T ss_dssp TTCEEEETTCTTTHHHHHH----HHTTCSEE--EEEESCHHHHHHHHHHH
T ss_pred CCCeEEEecCCCCHHHHHH----HHCCCCEE--EEEeCCHHHHHHHHHHH
Confidence 4468999999999999877 34465322 59999999999988875
No 54
>1pfb_A Polycomb protein; chromatin, histone methylation, polycomb, chromodomain, peptide binding protein; HET: M3L; 1.40A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=96.47 E-value=0.001 Score=52.48 Aligned_cols=37 Identities=27% Similarity=0.601 Sum_probs=32.8
Q ss_pred CCcceeEEeeccCCCCCCCcccccccchhhhhhHHhHh
Q 003974 395 KPGVYFKVRWKGYGPSEDTWEPIKGLSKCKEKLKEFVT 432 (782)
Q Consensus 395 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (782)
++.+.+.|.|+||.++++||+|.++|. |++.|.+|..
T Consensus 16 ~g~~~YlVKWkgy~~~~~TWEp~~~l~-~~~li~~f~~ 52 (55)
T 1pfb_A 16 KGVVEYRVKWKGWNQRYNTWEPEVNIL-DRRLIDIYEQ 52 (55)
T ss_dssp TTEEEEEEEETTSCGGGCEEEEGGGCC-STHHHHHHHT
T ss_pred CCeEEEEEEEcCCCCccCcEeEHHHCC-CHHHHHHHHH
Confidence 467899999999999999999999997 6888988854
No 55
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=96.46 E-value=0.019 Score=54.75 Aligned_cols=43 Identities=23% Similarity=0.242 Sum_probs=34.4
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
...++||+.||.|.++.-+. ..+.++ .++|+++.+++..+.|.
T Consensus 35 ~~~~vLdiG~G~G~~~~~l~----~~~~~v---~~vD~~~~~~~~a~~~~ 77 (183)
T 2yxd_A 35 KDDVVVDVGCGSGGMTVEIA----KRCKFV---YAIDYLDGAIEVTKQNL 77 (183)
T ss_dssp TTCEEEEESCCCSHHHHHHH----TTSSEE---EEEECSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHH----hcCCeE---EEEeCCHHHHHHHHHHH
Confidence 34589999999999998773 355554 49999999999888874
No 56
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=96.21 E-value=0.0082 Score=59.54 Aligned_cols=43 Identities=19% Similarity=0.218 Sum_probs=34.0
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
..++|||+||.|+++..+ ...|..- +.+||+++.+++..+.|.
T Consensus 54 ~~~vLDlGcGtG~~~~~~----~~~~~~~--v~gvD~s~~~l~~a~~~~ 96 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEA----LSRQAKK--VTFLELDKTVANQLKKNL 96 (201)
T ss_dssp TCEEEETTCTTCHHHHHH----HHTTCSE--EEEECSCHHHHHHHHHHH
T ss_pred CCeEEEcCCccCHHHHHH----HHccCCE--EEEEECCHHHHHHHHHHH
Confidence 358999999999998865 3445532 359999999999998875
No 57
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=96.08 E-value=0.0096 Score=59.09 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=34.3
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
..++|||+||.|.++..+ ...|..- +.+||+++.+++..+.|.
T Consensus 55 ~~~vLDlgcG~G~~~~~l----~~~~~~~--V~~vD~s~~~l~~a~~~~ 97 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEA----LSRYAAG--ATLIEMDRAVSQQLIKNL 97 (202)
T ss_dssp TCEEEETTCTTCHHHHHH----HHTTCSE--EEEECSCHHHHHHHHHHH
T ss_pred CCeEEEeCCCcCHHHHHH----HhcCCCE--EEEEECCHHHHHHHHHHH
Confidence 358999999999998875 3456532 259999999999998875
No 58
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=96.01 E-value=0.035 Score=55.56 Aligned_cols=44 Identities=14% Similarity=0.076 Sum_probs=34.6
Q ss_pred CCcceeccccc-cchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSG-CGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G-~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
+..++||++|| .|.++.-+. +..+.++ .|+|+++.+++..+.|.
T Consensus 55 ~~~~vLDlG~G~~G~~~~~la---~~~~~~v---~~vD~s~~~~~~a~~~~ 99 (230)
T 3evz_A 55 GGEVALEIGTGHTAMMALMAE---KFFNCKV---TATEVDEEFFEYARRNI 99 (230)
T ss_dssp SSCEEEEECCTTTCHHHHHHH---HHHCCEE---EEEECCHHHHHHHHHHH
T ss_pred CCCEEEEcCCCHHHHHHHHHH---HhcCCEE---EEEECCHHHHHHHHHHH
Confidence 45699999999 999888773 2225654 49999999999888874
No 59
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=95.99 E-value=0.012 Score=66.30 Aligned_cols=46 Identities=30% Similarity=0.243 Sum_probs=34.4
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
+..+||||+||.||.++-+..-+... ..| .|+|+++.+++..+.|.
T Consensus 105 ~g~~VLDlcaGpGgkt~~lA~~~~~~-g~V---~AvDis~~rl~~~~~n~ 150 (456)
T 3m4x_A 105 PGEKVLDLCAAPGGKSTQLAAQMKGK-GLL---VTNEIFPKRAKILSENI 150 (456)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTC-SEE---EEECSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCcCHHHHHHHHHcCCC-CEE---EEEeCCHHHHHHHHHHH
Confidence 45689999999999998874211112 233 59999999999998874
No 60
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=95.87 E-value=0.043 Score=52.75 Aligned_cols=36 Identities=25% Similarity=0.294 Sum_probs=30.0
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKS 304 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t 304 (782)
.-++||+.||.|.++.-| ...| ++ .|+|+++.+++.
T Consensus 24 ~~~vLD~GcG~G~~~~~l----~~~~-~v---~gvD~s~~~~~~ 59 (170)
T 3q87_B 24 MKIVLDLGTSTGVITEQL----RKRN-TV---VSTDLNIRALES 59 (170)
T ss_dssp SCEEEEETCTTCHHHHHH----TTTS-EE---EEEESCHHHHHT
T ss_pred CCeEEEeccCccHHHHHH----HhcC-cE---EEEECCHHHHhc
Confidence 348999999999999877 4566 43 599999999887
No 61
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=95.85 E-value=0.0081 Score=65.68 Aligned_cols=54 Identities=26% Similarity=0.407 Sum_probs=40.0
Q ss_pred cceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC-----CCCcccccchHHH
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADDF 322 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~-----p~~~~~~~d~~~~ 322 (782)
-++||||||+|+++.-|. ..+-+| .|||+++.|++..+.|. .+..++.+|+.++
T Consensus 215 ~~vLDl~cG~G~~~l~la----~~~~~V---~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~ 273 (369)
T 3bt7_A 215 GDLLELYCGNGNFSLALA----RNFDRV---LATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEF 273 (369)
T ss_dssp SEEEEESCTTSHHHHHHG----GGSSEE---EEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHH
T ss_pred CEEEEccCCCCHHHHHHH----hcCCEE---EEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHH
Confidence 469999999999998763 333333 59999999999988874 3455666666554
No 62
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=95.78 E-value=0.036 Score=61.93 Aligned_cols=42 Identities=21% Similarity=0.320 Sum_probs=34.2
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
.-++||||||.|.++.-| ...+.++ .|+|+++.|++..+.|.
T Consensus 287 ~~~VLDlgcG~G~~~~~l----a~~~~~V---~gvD~s~~al~~A~~n~ 328 (433)
T 1uwv_A 287 EDRVLDLFCGMGNFTLPL----ATQAASV---VGVEGVPALVEKGQQNA 328 (433)
T ss_dssp TCEEEEESCTTTTTHHHH----HTTSSEE---EEEESCHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHH----HhhCCEE---EEEeCCHHHHHHHHHHH
Confidence 358999999999999887 3345554 59999999999988875
No 63
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=95.72 E-value=0.093 Score=50.50 Aligned_cols=43 Identities=21% Similarity=0.168 Sum_probs=34.9
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
+..++||+.||.|.++.-|. ..|.++ .|+|+++.+++..+.|.
T Consensus 22 ~~~~vLDiGcG~G~~~~~la----~~~~~v---~~vD~s~~~l~~a~~~~ 64 (185)
T 3mti_A 22 DESIVVDATMGNGNDTAFLA----GLSKKV---YAFDVQEQALGKTSQRL 64 (185)
T ss_dssp TTCEEEESCCTTSHHHHHHH----TTSSEE---EEEESCHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCHHHHHHH----HhCCEE---EEEECCHHHHHHHHHHH
Confidence 34689999999999998873 346665 49999999998888765
No 64
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=95.71 E-value=0.016 Score=65.37 Aligned_cols=58 Identities=22% Similarity=0.230 Sum_probs=39.4
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC----CCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP----ETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p----~~~~~~~d~~~ 321 (782)
+..+||||+||.||.++-+..-+...| .| .|+|+++.+++..+.|.. ...+.+.|+.+
T Consensus 101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g-~V---~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~ 162 (464)
T 3m6w_A 101 PGERVLDLAAAPGGKTTHLAARMGGKG-LL---LANEVDGKRVRGLLENVERWGAPLAVTQAPPRA 162 (464)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCS-EE---EEECSCHHHHHHHHHHHHHHCCCCEEECSCHHH
T ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCC-EE---EEEECCHHHHHHHHHHHHHcCCeEEEEECCHHH
Confidence 456899999999999988742111122 33 599999999999988742 14444555443
No 65
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=95.68 E-value=0.024 Score=53.53 Aligned_cols=54 Identities=22% Similarity=0.293 Sum_probs=41.1
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC----CCcccccchHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP----ETKVRNEAADD 321 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p----~~~~~~~d~~~ 321 (782)
.-++||++||.|.++..+ ...|.++ .++|+++.+++..+.|.. +..++..|+.+
T Consensus 42 ~~~vLD~GcG~G~~~~~l----~~~~~~v---~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~ 99 (171)
T 1ws6_A 42 RGRFLDPFAGSGAVGLEA----ASEGWEA---VLVEKDPEAVRLLKENVRRTGLGARVVALPVEV 99 (171)
T ss_dssp CCEEEEETCSSCHHHHHH----HHTTCEE---EEECCCHHHHHHHHHHHHHHTCCCEEECSCHHH
T ss_pred CCeEEEeCCCcCHHHHHH----HHCCCeE---EEEeCCHHHHHHHHHHHHHcCCceEEEeccHHH
Confidence 458999999999998877 4567763 599999999999888754 44555555544
No 66
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=95.55 E-value=0.054 Score=56.45 Aligned_cols=43 Identities=28% Similarity=0.400 Sum_probs=33.6
Q ss_pred CcceeccccccchhHHHHHHhhhhcC-CceeeEEEEecCHHHHHHHHHhC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSG-VKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG-~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
.-++||||||.|+++.-+. +..+ .++ .|||+++.|++..+.|.
T Consensus 120 ~~~VLDlgcG~G~~s~~la---~~~~~~~V---~~vD~s~~av~~a~~n~ 163 (272)
T 3a27_A 120 NEVVVDMFAGIGYFTIPLA---KYSKPKLV---YAIEKNPTAYHYLCENI 163 (272)
T ss_dssp TCEEEETTCTTTTTHHHHH---HHTCCSEE---EEEECCHHHHHHHHHHH
T ss_pred CCEEEEecCcCCHHHHHHH---HhCCCCEE---EEEeCCHHHHHHHHHHH
Confidence 3589999999999998773 3322 233 59999999999988875
No 67
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=95.54 E-value=0.026 Score=66.98 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=34.9
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
..+|||||||.|++++.+ ...|..-+ .+||+++.|++..+.|.
T Consensus 540 g~~VLDlg~GtG~~sl~a----a~~ga~~V--~aVD~s~~al~~a~~N~ 582 (703)
T 3v97_A 540 GKDFLNLFSYTGSATVHA----GLGGARST--TTVDMSRTYLEWAERNL 582 (703)
T ss_dssp TCEEEEESCTTCHHHHHH----HHTTCSEE--EEEESCHHHHHHHHHHH
T ss_pred CCcEEEeeechhHHHHHH----HHCCCCEE--EEEeCCHHHHHHHHHHH
Confidence 458999999999988776 45676533 59999999999998884
No 68
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=95.40 E-value=0.069 Score=53.53 Aligned_cols=44 Identities=20% Similarity=0.282 Sum_probs=35.4
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP 310 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p 310 (782)
+..++||+.||.|.++.-| ...|.++ .++|+++.+++..+.+.+
T Consensus 37 ~~~~vLdiG~G~G~~~~~l----~~~~~~~---~~~D~s~~~~~~a~~~~~ 80 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENL----CPKFKNT---WAVDLSQEMLSEAENKFR 80 (246)
T ss_dssp CTTEEEEETCTTSTTHHHH----GGGSSEE---EEECSCHHHHHHHHHHHH
T ss_pred CCCeEEEeCCCCCHHHHHH----HHCCCcE---EEEECCHHHHHHHHHHHh
Confidence 4469999999999999877 4557765 499999999888877654
No 69
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=95.38 E-value=0.094 Score=56.45 Aligned_cols=49 Identities=18% Similarity=0.178 Sum_probs=35.0
Q ss_pred CCcceeccccccchhHHHHHHhhhhc-CCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLS-GVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~a-G~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
...++||++||.|++...+..-+... |.. ..++|+|+++.++...+.|.
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~-~~v~GiDi~~~~~~~a~~n~ 179 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVD-VHASGVDVDDLLISLALVGA 179 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCE-EEEEEEESCHHHHHHHHHHH
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCC-ceEEEEECCHHHHHHHHHHH
Confidence 45799999999999998774221111 111 23479999999999988863
No 70
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=95.29 E-value=0.026 Score=62.94 Aligned_cols=42 Identities=29% Similarity=0.400 Sum_probs=34.2
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
.-++||||||.|.++.-| ...|.++ .|||+++.|++..+.|.
T Consensus 291 ~~~VLDlgcG~G~~sl~l----a~~~~~V---~gvD~s~~ai~~A~~n~ 332 (425)
T 2jjq_A 291 GEKILDMYSGVGTFGIYL----AKRGFNV---KGFDSNEFAIEMARRNV 332 (425)
T ss_dssp SSEEEEETCTTTHHHHHH----HHTTCEE---EEEESCHHHHHHHHHHH
T ss_pred CCEEEEeeccchHHHHHH----HHcCCEE---EEEECCHHHHHHHHHHH
Confidence 358999999999999877 3445554 59999999999888875
No 71
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=95.27 E-value=0.14 Score=52.75 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=35.4
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPE 311 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~ 311 (782)
..++|||+||+|.++.-|.. +..+.++ .+||+++.+++..+.|...
T Consensus 37 ~~~VLDlG~G~G~~~l~la~--~~~~~~v---~gvDi~~~~~~~a~~n~~~ 82 (260)
T 2ozv_A 37 ACRIADLGAGAGAAGMAVAA--RLEKAEV---TLYERSQEMAEFARRSLEL 82 (260)
T ss_dssp CEEEEECCSSSSHHHHHHHH--HCTTEEE---EEEESSHHHHHHHHHHTTS
T ss_pred CCEEEEeCChHhHHHHHHHH--hCCCCeE---EEEECCHHHHHHHHHHHHh
Confidence 45899999999998877631 2123443 5999999999999998754
No 72
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=95.16 E-value=0.023 Score=60.73 Aligned_cols=44 Identities=18% Similarity=0.317 Sum_probs=33.9
Q ss_pred CCcceeccccccchhHHHHHHhhhhc--CCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLS--GVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~a--G~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
+..++||++||.|+.++-|. +.. +..+ .|+|+++.+++..+.|.
T Consensus 118 ~g~~VLDlg~G~G~~t~~la---~~~~~~~~v---~avD~s~~~l~~a~~~~ 163 (315)
T 1ixk_A 118 PGEIVADMAAAPGGKTSYLA---QLMRNDGVI---YAFDVDENRLRETRLNL 163 (315)
T ss_dssp TTCEEEECCSSCSHHHHHHH---HHTTTCSEE---EEECSCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHH---HHhCCCCEE---EEEcCCHHHHHHHHHHH
Confidence 34589999999999998874 222 2343 59999999999888874
No 73
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=95.16 E-value=0.11 Score=51.24 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=35.5
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
+..++||+.||.|.++.-| ...|.++ .++|+++.+++..+.+.
T Consensus 43 ~~~~vLDiGcG~G~~~~~l----~~~~~~v---~~vD~s~~~~~~a~~~~ 85 (211)
T 3e23_A 43 AGAKILELGCGAGYQAEAM----LAAGFDV---DATDGSPELAAEASRRL 85 (211)
T ss_dssp TTCEEEESSCTTSHHHHHH----HHTTCEE---EEEESCHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCHHHHHH----HHcCCeE---EEECCCHHHHHHHHHhc
Confidence 3468999999999998877 4557765 49999999999888875
No 74
>1x3p_A Cpsrp43; chromo-2 domain, chloroplasts, LHCP, protein translocation, unknown function; NMR {Arabidopsis thaliana} SCOP: b.34.13.2
Probab=95.14 E-value=0.0073 Score=47.39 Aligned_cols=33 Identities=21% Similarity=0.507 Sum_probs=28.1
Q ss_pred Ccc-eeEEeeccCCCCCCCcccccccchhhhhhHHhHh
Q 003974 396 PGV-YFKVRWKGYGPSEDTWEPIKGLSKCKEKLKEFVT 432 (782)
Q Consensus 396 ~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (782)
+.+ .+.|.|+|| +++||+|.++|. ++.|.+|..
T Consensus 15 g~~~~YlVKWkgy--~~~TWEp~~nL~--~~li~~f~~ 48 (54)
T 1x3p_A 15 GKTIEYLVKWTDM--SDATWEPQDNVD--STLVLLYQQ 48 (54)
T ss_dssp SCCCCBCCCCSSS--SSCSCSTTCCSS--SSSHHHHTS
T ss_pred CcEEEEEEEECCC--CcCCccchHHCC--HHHHHHHHH
Confidence 445 889999998 899999999996 888988854
No 75
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=95.13 E-value=0.038 Score=54.90 Aligned_cols=44 Identities=18% Similarity=0.174 Sum_probs=33.7
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
..++|||.||.|.++.-+.. ...+.++ .|||+++.+++..+.|.
T Consensus 42 ~~~vLDiGcG~G~~~~~la~--~~p~~~v---~gvD~s~~~l~~a~~~~ 85 (214)
T 1yzh_A 42 NPIHVEVGSGKGAFVSGMAK--QNPDINY---IGIDIQKSVLSYALDKV 85 (214)
T ss_dssp CCEEEEESCTTSHHHHHHHH--HCTTSEE---EEEESCHHHHHHHHHHH
T ss_pred CCeEEEEccCcCHHHHHHHH--HCCCCCE---EEEEcCHHHHHHHHHHH
Confidence 35899999999999887732 2224554 49999999998887764
No 76
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=95.11 E-value=0.016 Score=64.20 Aligned_cols=41 Identities=20% Similarity=0.163 Sum_probs=34.8
Q ss_pred cceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
-++||||||.|+.+..| ...|.+| .+||+++.+++..+.|.
T Consensus 95 ~~VLDLgcG~G~~al~L----A~~g~~V---~~VD~s~~~l~~Ar~N~ 135 (410)
T 3ll7_A 95 TKVVDLTGGLGIDFIAL----MSKASQG---IYIERNDETAVAARHNI 135 (410)
T ss_dssp CEEEESSCSSSHHHHHH----HTTCSEE---EEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHH----HhcCCEE---EEEECCHHHHHHHHHhH
Confidence 58999999999998877 4556665 49999999999999885
No 77
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=95.05 E-value=0.14 Score=50.54 Aligned_cols=50 Identities=20% Similarity=0.281 Sum_probs=39.7
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC-CCcccc
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP-ETKVRN 316 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p-~~~~~~ 316 (782)
+..++||+-||.|.++.-| ...|.++ .++|+++.+++..+.+.+ +..++.
T Consensus 45 ~~~~vLDiGcG~G~~~~~l----~~~~~~v---~~vD~s~~~~~~a~~~~~~~~~~~~ 95 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKL----LLAGRTV---YGIEPSREMRMIAKEKLPKEFSITE 95 (220)
T ss_dssp CCSEEEEECCTTSHHHHHH----HHTTCEE---EEECSCHHHHHHHHHHSCTTCCEES
T ss_pred CCCeEEEeCCCCCHHHHHH----HhCCCeE---EEEeCCHHHHHHHHHhCCCceEEEe
Confidence 4569999999999998887 3457765 499999999999999887 444443
No 78
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=95.05 E-value=0.17 Score=49.21 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=33.9
Q ss_pred CCcceeccccccchhHHHHHHhhhhcC--CceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSG--VKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG--~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
+..++||+.||.|.++.-+. +..| .++ .|+|+++.+++..+.|.
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~---~~~~~~~~v---~~vD~s~~~~~~a~~~~ 67 (197)
T 3eey_A 22 EGDTVVDATCGNGNDTAFLA---SLVGENGRV---FGFDIQDKAIANTTKKL 67 (197)
T ss_dssp TTCEEEESCCTTSHHHHHHH---HHHCTTCEE---EEECSCHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCHHHHHHH---HHhCCCCEE---EEEECCHHHHHHHHHHH
Confidence 44699999999999888774 3322 343 59999999999888874
No 79
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=95.01 E-value=0.03 Score=54.48 Aligned_cols=58 Identities=19% Similarity=0.316 Sum_probs=44.7
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC-----CCCcccccchHHHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADDFL 323 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~-----p~~~~~~~d~~~~~ 323 (782)
...++|||+||.|.++..+ ...|..- +.|+|+++.+++..+.|. ++..++.+|+.+++
T Consensus 44 ~~~~vLDlgcG~G~~~~~~----~~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 106 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEA----LSRGAAS--VLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVV 106 (189)
T ss_dssp TTCEEEEETCTTCHHHHHH----HHTTCSE--EEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHH
T ss_pred CCCEEEEeCCCcCHHHHHH----HHCCCCe--EEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHH
Confidence 4468999999999998866 3356542 259999999999988875 45678888887763
No 80
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=94.96 E-value=0.48 Score=46.47 Aligned_cols=53 Identities=17% Similarity=0.169 Sum_probs=41.2
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADD 321 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~ 321 (782)
..++||+-||.|.++.-| ...|.++ .++|+++.+++..+.+ +...+...|+.+
T Consensus 53 ~~~vLdiG~G~G~~~~~l----~~~~~~v---~~vD~s~~~~~~a~~~-~~~~~~~~~~~~ 105 (227)
T 3e8s_A 53 PERVLDLGCGEGWLLRAL----ADRGIEA---VGVDGDRTLVDAARAA-GAGEVHLASYAQ 105 (227)
T ss_dssp CSEEEEETCTTCHHHHHH----HTTTCEE---EEEESCHHHHHHHHHT-CSSCEEECCHHH
T ss_pred CCEEEEeCCCCCHHHHHH----HHCCCEE---EEEcCCHHHHHHHHHh-cccccchhhHHh
Confidence 369999999999998877 4557765 4999999999999888 555555555544
No 81
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=94.92 E-value=0.037 Score=59.09 Aligned_cols=46 Identities=17% Similarity=0.228 Sum_probs=34.3
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
+.-+|||+|||.||.++-+..-+. .+-.| +|+|+++.+++..+.|.
T Consensus 102 ~g~~VLDlcaG~G~kt~~la~~~~-~~g~V---~a~D~~~~~l~~~~~n~ 147 (309)
T 2b9e_A 102 PGSHVIDACAAPGNKTSHLAALLK-NQGKI---FAFDLDAKRLASMATLL 147 (309)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHT-TCSEE---EEEESCHHHHHHHHHHH
T ss_pred CCCEEEEeCCChhHHHHHHHHHhC-CCCEE---EEEeCCHHHHHHHHHHH
Confidence 446899999999999988742111 11233 59999999999998874
No 82
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=94.89 E-value=0.06 Score=51.66 Aligned_cols=44 Identities=32% Similarity=0.341 Sum_probs=33.9
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
...++||++||.|+++.-+ ...|.. .+.++|+++.+++..+.|.
T Consensus 44 ~~~~vLD~GcG~G~~~~~~----~~~~~~--~v~~vD~~~~~~~~a~~~~ 87 (187)
T 2fhp_A 44 DGGMALDLYSGSGGLAIEA----VSRGMD--KSICIEKNFAALKVIKENI 87 (187)
T ss_dssp SSCEEEETTCTTCHHHHHH----HHTTCS--EEEEEESCHHHHHHHHHHH
T ss_pred CCCCEEEeCCccCHHHHHH----HHcCCC--EEEEEECCHHHHHHHHHHH
Confidence 4458999999999998866 234532 2259999999999888875
No 83
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=94.89 E-value=0.19 Score=50.39 Aligned_cols=43 Identities=14% Similarity=-0.016 Sum_probs=36.1
Q ss_pred cceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCC
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPE 311 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~ 311 (782)
.++||+.||.|.++.-| ...|.++ .++|+++.+++..+.+.+.
T Consensus 68 ~~vLDiGcG~G~~~~~l----~~~~~~v---~gvD~s~~~~~~a~~~~~~ 110 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAM----ASPERFV---VGLDISESALAKANETYGS 110 (235)
T ss_dssp EEEEEETCTTCHHHHHH----CBTTEEE---EEECSCHHHHHHHHHHHTT
T ss_pred CCEEEeCCCCCHHHHHH----HhCCCeE---EEEECCHHHHHHHHHHhhc
Confidence 49999999999998877 4567664 4999999999999888765
No 84
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=94.81 E-value=0.045 Score=62.00 Aligned_cols=44 Identities=16% Similarity=0.186 Sum_probs=34.4
Q ss_pred CCcceeccccccchhHHHHHHhhhhcC--CceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSG--VKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG--~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
+..+|||++||.||.++-+. +..+ ..| .|+|+++.+++..+.|.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA---~~~~~~g~V---~avDis~~~l~~~~~n~ 162 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQIS---ARMNNEGAI---LANEFSASRVKVLHANI 162 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHH---HHTTTCSEE---EEECSSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHH---HhCCCCCEE---EEEECCHHHHHHHHHHH
Confidence 45689999999999998774 3322 333 59999999999998874
No 85
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=94.61 E-value=0.046 Score=59.98 Aligned_cols=43 Identities=23% Similarity=0.270 Sum_probs=34.1
Q ss_pred CcceeccccccchhHHHHHHhhhhcC-CceeeEEEEecCHHHHHHHHHhC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSG-VKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG-~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
..++||||||+|++++-+. +..| .+| +|||+++.|++..+.|.
T Consensus 48 ~~~VLDl~aGtG~~~l~~a---~~~~~~~V---~avDi~~~av~~a~~N~ 91 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFA---LETPAEEV---WLNDISEDAYELMKRNV 91 (378)
T ss_dssp CSEEEESSCTTSHHHHHHH---HHSSCSEE---EEEESCHHHHHHHHHHH
T ss_pred CCEEEECCCchhHHHHHHH---HhCCCCeE---EEEECCHHHHHHHHHHH
Confidence 3589999999999988773 3334 343 69999999999998874
No 86
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=94.52 E-value=0.083 Score=52.86 Aligned_cols=47 Identities=19% Similarity=0.190 Sum_probs=36.8
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPE 311 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~ 311 (782)
+..++||+-||.|.++.-|.. ...|.++ .++|+++.+++..+.+.+.
T Consensus 44 ~~~~vLDiG~G~G~~~~~l~~--~~~~~~v---~~vD~s~~~~~~a~~~~~~ 90 (234)
T 3dtn_A 44 ENPDILDLGAGTGLLSAFLME--KYPEATF---TLVDMSEKMLEIAKNRFRG 90 (234)
T ss_dssp SSCEEEEETCTTSHHHHHHHH--HCTTCEE---EEEESCHHHHHHHHHHTCS
T ss_pred CCCeEEEecCCCCHHHHHHHH--hCCCCeE---EEEECCHHHHHHHHHhhcc
Confidence 457999999999999887732 1126665 4999999999999988764
No 87
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=94.49 E-value=0.23 Score=48.63 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=34.1
Q ss_pred CCcceeccccccchhHHHHHHhhhhcC--CceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSG--VKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG--~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
+..++||+.||.|.++.-+. ..| .++ .++|+++.+++..+.|.
T Consensus 40 ~~~~vLDiG~G~G~~~~~la----~~~~~~~v---~~vD~s~~~~~~a~~~~ 84 (204)
T 3e05_A 40 DDLVMWDIGAGSASVSIEAS----NLMPNGRI---FALERNPQYLGFIRDNL 84 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHH----HHCTTSEE---EEEECCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHH----HHCCCCEE---EEEeCCHHHHHHHHHHH
Confidence 44689999999999988773 334 444 59999999999888875
No 88
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=94.39 E-value=0.035 Score=58.38 Aligned_cols=42 Identities=21% Similarity=0.392 Sum_probs=34.1
Q ss_pred cceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
.++||++||.|.++..|. +..+.++ .|+|+++.|++..+.|.
T Consensus 125 ~~vLDlG~GsG~~~~~la---~~~~~~v---~~vDis~~al~~A~~n~ 166 (284)
T 1nv8_A 125 KTVADIGTGSGAIGVSVA---KFSDAIV---FATDVSSKAVEIARKNA 166 (284)
T ss_dssp CEEEEESCTTSHHHHHHH---HHSSCEE---EEEESCHHHHHHHHHHH
T ss_pred CEEEEEeCchhHHHHHHH---HCCCCEE---EEEECCHHHHHHHHHHH
Confidence 589999999999988873 2235554 59999999999999885
No 89
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=94.15 E-value=0.18 Score=50.21 Aligned_cols=43 Identities=9% Similarity=0.149 Sum_probs=33.1
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHh
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFN 308 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N 308 (782)
..++||+.||.|.++..|.. ...+.++ .|||+++.+++..+.|
T Consensus 39 ~~~vLDiGcG~G~~~~~la~--~~p~~~v---~giD~s~~~l~~a~~~ 81 (213)
T 2fca_A 39 NPIHIEVGTGKGQFISGMAK--QNPDINY---IGIELFKSVIVTAVQK 81 (213)
T ss_dssp CCEEEEECCTTSHHHHHHHH--HCTTSEE---EEECSCHHHHHHHHHH
T ss_pred CceEEEEecCCCHHHHHHHH--HCCCCCE---EEEEechHHHHHHHHH
Confidence 35799999999999987731 2235554 4999999998887776
No 90
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=94.13 E-value=0.043 Score=60.51 Aligned_cols=58 Identities=26% Similarity=0.262 Sum_probs=43.2
Q ss_pred CcceeccccccchhHHHHHHhhhh-cCCceeeEEEEecCHHHHHHHHHhCC-----C--CcccccchHHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASL-SGVKLVTRWAIDINPHACKSLKFNHP-----E--TKVRNEAADDFL 323 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~-aG~~~~~~~ave~~~~a~~t~~~N~p-----~--~~~~~~d~~~~~ 323 (782)
..++||||||.|++++=+. .. .|..-+ +|||+++.|++..+.|.- + ..++++|+.+++
T Consensus 53 g~~VLDlfaGtG~~sl~aa---~~~~ga~~V--~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l 118 (392)
T 3axs_A 53 PVKVADPLSASGIRAIRFL---LETSCVEKA--YANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFL 118 (392)
T ss_dssp CEEEEESSCTTSHHHHHHH---HHCSCEEEE--EEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHH
T ss_pred CCEEEECCCcccHHHHHHH---HhCCCCCEE--EEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHH
Confidence 4589999999999887552 32 354433 699999999999888742 3 567888887764
No 91
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=94.10 E-value=0.033 Score=54.59 Aligned_cols=48 Identities=19% Similarity=0.363 Sum_probs=25.8
Q ss_pred CCCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCC
Q 003974 259 QPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPE 311 (782)
Q Consensus 259 ~~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~ 311 (782)
....++||+.||.|.++.-+.. ...+.++ .++|+++.+++..+.|...
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~--~~~~~~v---~~vD~~~~~~~~a~~~~~~ 76 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIAL--ACPGVSV---TAVDLSMDALAVARRNAER 76 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHH--HCTTEEE---EEEECC-------------
T ss_pred CCCCEEEEecCCHhHHHHHHHH--hCCCCeE---EEEECCHHHHHHHHHHHHH
Confidence 3567999999999999887732 1224444 5999999999998888754
No 92
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=94.08 E-value=0.2 Score=54.57 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=34.3
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCC--ceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGV--KLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~--~~~~~~ave~~~~a~~t~~~N~ 309 (782)
...++||++||.|++..-+ ...|. ++ .++|+++.+++..+.|.
T Consensus 217 ~~~~vLD~gCGsG~~~i~~----a~~~~~~~v---~g~Dis~~~l~~A~~n~ 261 (373)
T 3tm4_A 217 DGGSVLDPMCGSGTILIEL----ALRRYSGEI---IGIEKYRKHLIGAEMNA 261 (373)
T ss_dssp CSCCEEETTCTTCHHHHHH----HHTTCCSCE---EEEESCHHHHHHHHHHH
T ss_pred CCCEEEEccCcCcHHHHHH----HHhCCCCeE---EEEeCCHHHHHHHHHHH
Confidence 4568999999999988766 33443 43 59999999999998885
No 93
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=94.05 E-value=0.042 Score=58.22 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=34.4
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
.-++||+.||.|.++..| ...|.++ .|||+++.+++..+.|.
T Consensus 43 ~~~VLDiG~G~G~lt~~L----a~~~~~v---~~vDi~~~~~~~a~~~~ 84 (299)
T 2h1r_A 43 SDIVLEIGCGTGNLTVKL----LPLAKKV---ITIDIDSRMISEVKKRC 84 (299)
T ss_dssp TCEEEEECCTTSTTHHHH----TTTSSEE---EEECSCHHHHHHHHHHH
T ss_pred cCEEEEEcCcCcHHHHHH----HhcCCEE---EEEECCHHHHHHHHHHH
Confidence 458999999999999888 3446554 49999999999888764
No 94
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=93.99 E-value=0.064 Score=60.18 Aligned_cols=45 Identities=27% Similarity=0.324 Sum_probs=34.1
Q ss_pred CCcceeccccccchhHHHHHHhhhhcC-CceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSG-VKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG-~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
+..++||++||.||.++-+.. ...| ..+ .|+|+++.+++..+.|.
T Consensus 259 ~g~~VLDlgaG~G~~t~~la~--~~~~~~~v---~a~D~s~~~l~~~~~~~ 304 (450)
T 2yxl_A 259 PGETVVDLAAAPGGKTTHLAE--LMKNKGKI---YAFDVDKMRMKRLKDFV 304 (450)
T ss_dssp TTCEEEESSCTTCHHHHHHHH--HTTTCSEE---EEECSCHHHHHHHHHHH
T ss_pred CcCEEEEeCCCccHHHHHHHH--HcCCCCEE---EEEcCCHHHHHHHHHHH
Confidence 345899999999999988742 1223 333 59999999999888874
No 95
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=93.98 E-value=0.064 Score=55.69 Aligned_cols=45 Identities=27% Similarity=0.347 Sum_probs=34.7
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
...++||++||.|+++.-+.. ...+.++ .|+|+++.|++..+.|.
T Consensus 109 ~~~~vLDlG~GsG~~~~~la~--~~~~~~v---~~vD~s~~~l~~a~~n~ 153 (276)
T 2b3t_A 109 QPCRILDLGTGTGAIALALAS--ERPDCEI---IAVDRMPDAVSLAQRNA 153 (276)
T ss_dssp SCCEEEEETCTTSHHHHHHHH--HCTTSEE---EEECSSHHHHHHHHHHH
T ss_pred CCCEEEEecCCccHHHHHHHH--hCCCCEE---EEEECCHHHHHHHHHHH
Confidence 346899999999999887731 2234554 59999999999998874
No 96
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=93.80 E-value=0.061 Score=55.90 Aligned_cols=41 Identities=20% Similarity=0.226 Sum_probs=32.4
Q ss_pred cceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
.++||+|||.|..+.-| ...|.+|+ +||+++..+...+.|.
T Consensus 90 ~~VLDl~~G~G~dal~l----A~~g~~V~---~vE~~~~~~~l~~~~l 130 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVL----ASVGCRVR---MLERNPVVAALLDDGL 130 (258)
T ss_dssp CCEEETTCTTCHHHHHH----HHHTCCEE---EEECCHHHHHHHHHHH
T ss_pred CEEEEcCCcCCHHHHHH----HHcCCEEE---EEECCHHHHHHHHHHH
Confidence 58999999999988776 33476654 9999998877776664
No 97
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=93.65 E-value=0.75 Score=48.37 Aligned_cols=44 Identities=9% Similarity=0.049 Sum_probs=33.9
Q ss_pred cceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP 310 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p 310 (782)
.++|||.||.|+++.-+. +..|.. .+.+||+++.+++..+.|++
T Consensus 92 ~~VLdiG~G~G~~~~~l~---~~~~~~--~v~~vDid~~~~~~a~~~~~ 135 (296)
T 1inl_A 92 KKVLIIGGGDGGTLREVL---KHDSVE--KAILCEVDGLVIEAARKYLK 135 (296)
T ss_dssp CEEEEEECTTCHHHHHHT---TSTTCS--EEEEEESCHHHHHHHHHHCH
T ss_pred CEEEEEcCCcCHHHHHHH---hcCCCC--EEEEEECCHHHHHHHHHHhH
Confidence 589999999999888772 332432 23599999999999998864
No 98
>2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.62 E-value=0.006 Score=50.23 Aligned_cols=60 Identities=25% Similarity=0.375 Sum_probs=41.2
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCCcceeEEeeccCCCCCCCcccccccchhhhhhHHhHh
Q 003974 371 NVPNEEFEVERLIAVCYGDPNKTKKPGVYFKVRWKGYGPSEDTWEPIKGLSKCKEKLKEFVT 432 (782)
Q Consensus 371 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (782)
.+.++-++|+++++.........+...+.+-|.|+|+..++.|||+.+++ +++.|.+|-.
T Consensus 6 ~~~pe~~~VErIl~~r~~~~~~~g~~~~eYLVKWkgl~y~e~TWE~~~~l--~~~~I~~f~~ 65 (68)
T 2epb_A 6 SGNPDYVEVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWELEEDV--DPAKVKEFES 65 (68)
T ss_dssp SSCSSCCCCCEEEEEEEEECSSSCCEEEEEEEECTTSCGGGCCEEETTTS--CHHHHHHHHH
T ss_pred cCCCCceEEeEEEEEEecccccCCCcceEEEEEEcCCChhcCccccchhc--CHHHHHHHHH
Confidence 45556666777766421100011223678999999999999999999999 4688988854
No 99
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=93.52 E-value=0.075 Score=50.80 Aligned_cols=57 Identities=18% Similarity=0.220 Sum_probs=42.5
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC------CCCcccccchHHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH------PETKVRNEAADDF 322 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~------p~~~~~~~d~~~~ 322 (782)
...++||++||.|.++..+. ..|.. .+.++|+++.+++..+.|. +...++..|+.++
T Consensus 31 ~~~~vLDlGcG~G~~~~~l~----~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 93 (177)
T 2esr_A 31 NGGRVLDLFAGSGGLAIEAV----SRGMS--AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERA 93 (177)
T ss_dssp CSCEEEEETCTTCHHHHHHH----HTTCC--EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHH
T ss_pred CCCeEEEeCCCCCHHHHHHH----HcCCC--EEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHh
Confidence 34589999999999988773 34542 2359999999999988875 2355677777665
No 100
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=93.47 E-value=0.47 Score=45.10 Aligned_cols=43 Identities=26% Similarity=0.345 Sum_probs=33.8
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
+..++||+.||.|.++.-+ ...+.++ .++|+++.+++..+.|.
T Consensus 33 ~~~~vldiG~G~G~~~~~l----~~~~~~v---~~~D~~~~~~~~a~~~~ 75 (192)
T 1l3i_A 33 KNDVAVDVGCGTGGVTLEL----AGRVRRV---YAIDRNPEAISTTEMNL 75 (192)
T ss_dssp TTCEEEEESCTTSHHHHHH----HTTSSEE---EEEESCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHH----HHhcCEE---EEEECCHHHHHHHHHHH
Confidence 4459999999999988777 3455443 59999999998888764
No 101
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=93.32 E-value=0.9 Score=45.19 Aligned_cols=40 Identities=13% Similarity=0.137 Sum_probs=31.6
Q ss_pred cceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
.++||+.||.|.++.-|. .. .++ .++|+++.+++..+.+.
T Consensus 35 ~~vLdiG~G~G~~~~~l~----~~-~~v---~~vD~s~~~~~~a~~~~ 74 (243)
T 3d2l_A 35 KRIADIGCGTGTATLLLA----DH-YEV---TGVDLSEEMLEIAQEKA 74 (243)
T ss_dssp CEEEEESCTTCHHHHHHT----TT-SEE---EEEESCHHHHHHHHHHH
T ss_pred CeEEEecCCCCHHHHHHh----hC-CeE---EEEECCHHHHHHHHHhh
Confidence 589999999999888772 33 443 59999999988877764
No 102
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=93.16 E-value=0.077 Score=57.32 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=34.7
Q ss_pred CCcceeccccccchhHHHHHHhhhhc--CCceeeEEEEecCHHHHHHHHHhCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLS--GVKLVTRWAIDINPHACKSLKFNHP 310 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~a--G~~~~~~~ave~~~~a~~t~~~N~p 310 (782)
...++||+|||.|.+..-+. ..+ +.++ .++|+++.+++..+.|..
T Consensus 203 ~~~~vLD~gcGsG~~~ie~a---~~~~~~~~v---~g~Di~~~~i~~a~~n~~ 249 (354)
T 3tma_A 203 PGMRVLDPFTGSGTIALEAA---STLGPTSPV---YAGDLDEKRLGLAREAAL 249 (354)
T ss_dssp TTCCEEESSCTTSHHHHHHH---HHHCTTSCE---EEEESCHHHHHHHHHHHH
T ss_pred CCCEEEeCCCCcCHHHHHHH---HhhCCCceE---EEEECCHHHHHHHHHHHH
Confidence 34689999999999887653 333 2544 599999999999998854
No 103
>2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C
Probab=93.13 E-value=0.038 Score=49.90 Aligned_cols=61 Identities=21% Similarity=0.390 Sum_probs=41.2
Q ss_pred CchhHHHHHHHHHhcCCCCCCCCCcceeEEeeccCCCCCCCcccccccch----hhhhhHHhHhc
Q 003974 373 PNEEFEVERLIAVCYGDPNKTKKPGVYFKVRWKGYGPSEDTWEPIKGLSK----CKEKLKEFVTK 433 (782)
Q Consensus 373 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 433 (782)
+.+.|.|+++.+-...--.+.....+.|.|.|+||...++||+|.++|.. +...|..|...
T Consensus 33 ~~~~Y~VE~i~Dp~~ildkR~~~g~~eYlVKWkG~s~~~nTWEp~enL~~~~~~g~kklenY~kk 97 (115)
T 2b2y_C 33 TTTIYAVEADGDPNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKK 97 (115)
T ss_dssp GGSHHHHHHHCBTTTTCCTTSSSCEEEEEEEETTSCGGGCEEECHHHHHHHTCBCTHHHHHHHC-
T ss_pred CCceEEEeecCCcccccccceeCCcEEEEEEECCCCchhcccCCHHHcCCccchHHHHHHHHHHH
Confidence 34678888761110000124567888999999999999999999999863 23467777554
No 104
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=93.07 E-value=0.17 Score=55.48 Aligned_cols=44 Identities=23% Similarity=0.278 Sum_probs=36.0
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP 310 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p 310 (782)
...++|||+||.|.++.-+ ...|.++ .+||+++.+++..+.|..
T Consensus 233 ~~~~VLDlGcG~G~~~~~l----a~~g~~V---~gvDis~~al~~A~~n~~ 276 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPL----ARMGAEV---VGVEDDLASVLSLQKGLE 276 (381)
T ss_dssp TTCEEEEETCTTSTTHHHH----HHTTCEE---EEEESBHHHHHHHHHHHH
T ss_pred CCCEEEEEeeeCCHHHHHH----HHcCCEE---EEEECCHHHHHHHHHHHH
Confidence 4468999999999999877 3457765 499999999999888753
No 105
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=93.03 E-value=0.086 Score=58.68 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=33.8
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
+..++||++||.||.++-+.. ...+..+ .|+|+++.+++..+.|.
T Consensus 246 ~g~~VLDlgaG~G~~t~~la~--~~~~~~v---~a~D~~~~~l~~~~~~~ 290 (429)
T 1sqg_A 246 NGEHILDLCAAPGGKTTHILE--VAPEAQV---VAVDIDEQRLSRVYDNL 290 (429)
T ss_dssp TTCEEEEESCTTCHHHHHHHH--HCTTCEE---EEEESSTTTHHHHHHHH
T ss_pred CcCeEEEECCCchHHHHHHHH--HcCCCEE---EEECCCHHHHHHHHHHH
Confidence 445899999999999988742 1112333 59999999998888874
No 106
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=92.76 E-value=0.12 Score=50.41 Aligned_cols=55 Identities=18% Similarity=0.292 Sum_probs=46.7
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDF 322 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~~ 322 (782)
..++||+.||.|.++.-| ...|.++ .++|+++.+++..+.+.++..++..|+.++
T Consensus 42 ~~~vLDiGcG~G~~~~~l----~~~~~~v---~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~ 96 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHL----ASLGHQI---EGLEPATRLVELARQTHPSVTFHHGTITDL 96 (203)
T ss_dssp CSCEEEETCTTCHHHHHH----HHTTCCE---EEECCCHHHHHHHHHHCTTSEEECCCGGGG
T ss_pred CCeEEEecCCCCHHHHHH----HhcCCeE---EEEeCCHHHHHHHHHhCCCCeEEeCccccc
Confidence 568999999999998877 4558775 499999999999999999988888887653
No 107
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=92.39 E-value=0.13 Score=53.96 Aligned_cols=55 Identities=15% Similarity=0.125 Sum_probs=39.9
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC---CCcccccchHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP---ETKVRNEAADDF 322 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p---~~~~~~~d~~~~ 322 (782)
.-.+||||+|.|++..-+ .+|.+-. ..||.++.++++++.|.- .+.|++.|+..+
T Consensus 92 ~~~~LDlfaGSGaLgiEa-----LS~~d~~--vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~ 149 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQ-----LRSQDRL--YLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSK 149 (283)
T ss_dssp SSSSCCEEECHHHHHHHH-----SCTTSEE--EEECCSHHHHHHHTTSCCTTSCEEEECSCHHHH
T ss_pred CCCceeEeCCcHHHHHHH-----cCCCCeE--EEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHH
Confidence 346899999999866543 3455533 599999999999999983 455666665443
No 108
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=92.17 E-value=0.11 Score=53.21 Aligned_cols=55 Identities=20% Similarity=0.219 Sum_probs=43.2
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC---CCCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH---PETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~---p~~~~~~~d~~~ 321 (782)
..-++||+.||.|.++.-| ...|.++ .|||+|+.+++..+.|. ++..++.+|+.+
T Consensus 30 ~~~~VLDiG~G~G~lt~~l----~~~~~~v---~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~ 87 (244)
T 1qam_A 30 EHDNIFEIGSGKGHFTLEL----VQRCNFV---TAIEIDHKLCKTTENKLVDHDNFQVLNKDILQ 87 (244)
T ss_dssp TTCEEEEECCTTSHHHHHH----HHHSSEE---EEECSCHHHHHHHHHHTTTCCSEEEECCCGGG
T ss_pred CCCEEEEEeCCchHHHHHH----HHcCCeE---EEEECCHHHHHHHHHhhccCCCeEEEEChHHh
Confidence 3458999999999999888 3445554 59999999999999886 456677777655
No 109
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=92.13 E-value=0.13 Score=53.31 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=42.6
Q ss_pred cceeccccccchhHHHHHHhhhhcCCceeeEEEEecCH-------HHHHHHHHhC-----CC-CcccccchHHHH
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINP-------HACKSLKFNH-----PE-TKVRNEAADDFL 323 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~-------~a~~t~~~N~-----p~-~~~~~~d~~~~~ 323 (782)
.++||++||.|..+.-| ...|.+| .++|+++ .+++..+.|. .+ ..++.+|+.+++
T Consensus 85 ~~VLDlgcG~G~~a~~l----A~~g~~V---~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l 152 (258)
T 2r6z_A 85 PTVWDATAGLGRDSFVL----ASLGLTV---TAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQM 152 (258)
T ss_dssp CCEEETTCTTCHHHHHH----HHTTCCE---EEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHH
T ss_pred CeEEEeeCccCHHHHHH----HHhCCEE---EEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHH
Confidence 58999999999998877 3457665 4999999 8888877653 23 667888888764
No 110
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=91.92 E-value=0.21 Score=53.01 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=43.5
Q ss_pred CCcceeccccccchhHHHHHHhhhhc-CCceeeEEEEecCHHHHHHHHHhC----CCCcccccchHHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLS-GVKLVTRWAIDINPHACKSLKFNH----PETKVRNEAADDF 322 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~a-G~~~~~~~ave~~~~a~~t~~~N~----p~~~~~~~d~~~~ 322 (782)
+.-++||++||.||.+..+. +.. |.++ .|+|+|+.|++..+.|. +...++.+|..++
T Consensus 26 ~g~~vLD~g~G~G~~s~~la---~~~~~~~V---igvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l 87 (301)
T 1m6y_A 26 DEKIILDCTVGEGGHSRAIL---EHCPGCRI---IGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREA 87 (301)
T ss_dssp TTCEEEETTCTTSHHHHHHH---HHCTTCEE---EEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGH
T ss_pred CCCEEEEEeCCcCHHHHHHH---HHCCCCEE---EEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHH
Confidence 34589999999999998883 333 4554 59999999999998886 3456677777665
No 111
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=91.71 E-value=0.14 Score=53.75 Aligned_cols=44 Identities=23% Similarity=0.331 Sum_probs=35.7
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP 310 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p 310 (782)
...++||+.||.|.++..|. ..|.++ .|||+++.+++..+.+..
T Consensus 28 ~~~~VLDiG~G~G~lt~~L~----~~~~~v---~~vD~~~~~~~~a~~~~~ 71 (285)
T 1zq9_A 28 PTDVVLEVGPGTGNMTVKLL----EKAKKV---VACELDPRLVAELHKRVQ 71 (285)
T ss_dssp TTCEEEEECCTTSTTHHHHH----HHSSEE---EEEESCHHHHHHHHHHHT
T ss_pred CCCEEEEEcCcccHHHHHHH----hhCCEE---EEEECCHHHHHHHHHHHH
Confidence 34589999999999999883 446554 499999999999888764
No 112
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=91.64 E-value=0.36 Score=52.92 Aligned_cols=38 Identities=13% Similarity=0.196 Sum_probs=28.5
Q ss_pred CcceeccccccchhHHHHHHhhhh--cCCceeeEEEEecCHHHHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASL--SGVKLVTRWAIDINPHACKS 304 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~--aG~~~~~~~ave~~~~a~~t 304 (782)
..++||+.||.|++...+. +. .+.+ +.|+|+++.|++.
T Consensus 40 ~~~vLD~gcGtG~~~~~~~---~~~~~~~~---i~gvDi~~~~~~~ 79 (421)
T 2ih2_A 40 GGRVLEPACAHGPFLRAFR---EAHGTAYR---FVGVEIDPKALDL 79 (421)
T ss_dssp TCEEEEETCTTCHHHHHHH---HHHCSCSE---EEEEESCTTTCCC
T ss_pred CCEEEECCCCChHHHHHHH---HHhCCCCe---EEEEECCHHHHHh
Confidence 3489999999999988773 22 3344 3699999988653
No 113
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=91.62 E-value=0.11 Score=55.84 Aligned_cols=54 Identities=31% Similarity=0.519 Sum_probs=39.6
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC------CCCcccccchHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH------PETKVRNEAADDF 322 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~------p~~~~~~~d~~~~ 322 (782)
.-++||||||.|+++.- . + .+.++ .|+|+++.|++..+.|. ++..++++|+.++
T Consensus 196 ~~~VLDlg~G~G~~~l~-a---~-~~~~V---~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~ 255 (336)
T 2yx1_A 196 NDVVVDMFAGVGPFSIA-C---K-NAKKI---YAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREV 255 (336)
T ss_dssp TCEEEETTCTTSHHHHH-T---T-TSSEE---EEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGC
T ss_pred CCEEEEccCccCHHHHh-c---c-CCCEE---EEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHh
Confidence 34899999999998764 2 3 23333 59999999999998884 3456677777654
No 114
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=91.52 E-value=0.21 Score=50.01 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=44.0
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccch
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAA 319 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~ 319 (782)
+..++||+.||.|.++.-| ...|.++ .++|+++.+++..+.|.++..++..|+
T Consensus 48 ~~~~vLDiGcG~G~~~~~l----~~~~~~v---~~vD~s~~~~~~a~~~~~~~~~~~~d~ 100 (226)
T 3m33_A 48 PQTRVLEAGCGHGPDAARF----GPQAARW---AAYDFSPELLKLARANAPHADVYEWNG 100 (226)
T ss_dssp TTCEEEEESCTTSHHHHHH----GGGSSEE---EEEESCHHHHHHHHHHCTTSEEEECCS
T ss_pred CCCeEEEeCCCCCHHHHHH----HHcCCEE---EEEECCHHHHHHHHHhCCCceEEEcch
Confidence 4568999999999988877 3457765 499999999999999988877777665
No 115
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=91.21 E-value=0.18 Score=49.91 Aligned_cols=55 Identities=20% Similarity=0.300 Sum_probs=41.6
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC-----C-CCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----P-ETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~-----p-~~~~~~~d~~~ 321 (782)
+..++|||.||.|.++.-+. ..|.++ .|+|+++.+++..+.|. + +..++.+|+.+
T Consensus 55 ~~~~vLDlGcG~G~~~~~la----~~~~~v---~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~ 115 (204)
T 3njr_A 55 RGELLWDIGGGSGSVSVEWC----LAGGRA---ITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPA 115 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHH----HTTCEE---EEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTG
T ss_pred CCCEEEEecCCCCHHHHHHH----HcCCEE---EEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhh
Confidence 34689999999999887773 337665 49999999999888774 4 45666767655
No 116
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=91.07 E-value=0.29 Score=53.91 Aligned_cols=49 Identities=18% Similarity=0.200 Sum_probs=33.4
Q ss_pred CCcceeccccccchhHHHHHHhhhh--c--------------------------------CCceeeEEEEecCHHHHHHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASL--S--------------------------------GVKLVTRWAIDINPHACKSL 305 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~--a--------------------------------G~~~~~~~ave~~~~a~~t~ 305 (782)
....+||+|||.|++..-+.+-+.. . +... .+.++|+|+.|++..
T Consensus 201 ~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~-~V~GvDid~~al~~A 279 (393)
T 3k0b_A 201 PDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPL-NIIGGDIDARLIEIA 279 (393)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC-CEEEEESCHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCc-eEEEEECCHHHHHHH
Confidence 3468999999999987655432111 0 0011 246999999999999
Q ss_pred HHhC
Q 003974 306 KFNH 309 (782)
Q Consensus 306 ~~N~ 309 (782)
+.|.
T Consensus 280 r~Na 283 (393)
T 3k0b_A 280 KQNA 283 (393)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
No 117
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=90.99 E-value=0.16 Score=55.78 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=34.0
Q ss_pred CCcceeccccccchhHHHHHHhhhh-c---------------------------------CCceeeEEEEecCHHHHHHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASL-S---------------------------------GVKLVTRWAIDINPHACKSL 305 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~-a---------------------------------G~~~~~~~ave~~~~a~~t~ 305 (782)
...++||+|||.|++...+.+-+.. + +... .++++|+|+.|++.-
T Consensus 195 ~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~-~V~GvDid~~ai~~A 273 (385)
T 3ldu_A 195 AGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKF-KIYGYDIDEESIDIA 273 (385)
T ss_dssp TTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCC-CEEEEESCHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCc-eEEEEECCHHHHHHH
Confidence 3468999999999988766432211 0 0111 247999999999999
Q ss_pred HHhC
Q 003974 306 KFNH 309 (782)
Q Consensus 306 ~~N~ 309 (782)
+.|.
T Consensus 274 r~Na 277 (385)
T 3ldu_A 274 RENA 277 (385)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
No 118
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=90.83 E-value=0.14 Score=53.03 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=43.8
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC---CCCcccccchHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH---PETKVRNEAADDF 322 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~---p~~~~~~~d~~~~ 322 (782)
.-++||+.||.|.++.-| ...|.++ .|||+|+.+++..+.|. ++..++.+|+.++
T Consensus 30 ~~~VLEIG~G~G~lt~~L----a~~~~~V---~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~ 87 (255)
T 3tqs_A 30 TDTLVEIGPGRGALTDYL----LTECDNL---ALVEIDRDLVAFLQKKYNQQKNITIYQNDALQF 87 (255)
T ss_dssp TCEEEEECCTTTTTHHHH----TTTSSEE---EEEECCHHHHHHHHHHHTTCTTEEEEESCTTTC
T ss_pred cCEEEEEcccccHHHHHH----HHhCCEE---EEEECCHHHHHHHHHHHhhCCCcEEEEcchHhC
Confidence 458999999999999988 3456554 59999999999999886 4566778777553
No 119
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=90.72 E-value=0.2 Score=51.06 Aligned_cols=55 Identities=20% Similarity=0.253 Sum_probs=46.1
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDF 322 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~~ 322 (782)
..++||+.||.|.++.-| ...|.++ .++|+++.+++..+.+.++..++..|+.++
T Consensus 51 ~~~vLDiGcG~G~~~~~l----~~~~~~v---~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~ 105 (263)
T 3pfg_A 51 AASLLDVACGTGMHLRHL----ADSFGTV---EGLELSADMLAIARRRNPDAVLHHGDMRDF 105 (263)
T ss_dssp CCEEEEETCTTSHHHHHH----TTTSSEE---EEEESCHHHHHHHHHHCTTSEEEECCTTTC
T ss_pred CCcEEEeCCcCCHHHHHH----HHcCCeE---EEEECCHHHHHHHHhhCCCCEEEECChHHC
Confidence 368999999999999887 4567664 499999999999999999888888887653
No 120
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=90.38 E-value=0.46 Score=51.67 Aligned_cols=46 Identities=26% Similarity=0.242 Sum_probs=34.4
Q ss_pred CCCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 259 QPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 259 ~~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
++..+|||+|||.||=++-+. ..|-. ..++|+|+++..+..++.|.
T Consensus 147 ~pg~~VLD~CAaPGGKT~~la----~~~~~-~~l~A~D~~~~R~~~l~~~l 192 (359)
T 4fzv_A 147 QPGDIVLDLCAAPGGKTLALL----QTGCC-RNLAANDLSPSRIARLQKIL 192 (359)
T ss_dssp CTTEEEEESSCTTCHHHHHHH----HTTCE-EEEEEECSCHHHHHHHHHHH
T ss_pred CCCCEEEEecCCccHHHHHHH----HhcCC-CcEEEEcCCHHHHHHHHHHH
Confidence 345689999999999998773 22321 12469999999999888764
No 121
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=89.90 E-value=1 Score=48.90 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=33.0
Q ss_pred CcceeccccccchhHHHHHHhhhhcCC--ceeeEEEEecCHHHHHHHHHhCC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGV--KLVTRWAIDINPHACKSLKFNHP 310 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~--~~~~~~ave~~~~a~~t~~~N~p 310 (782)
..+|||++ |.|.++..+ ...|. ++ .++|+++.+++..+.|..
T Consensus 173 ~~~VLDlG-G~G~~~~~l----a~~~~~~~v---~~vDi~~~~l~~a~~~~~ 216 (373)
T 2qm3_A 173 NKDIFVLG-DDDLTSIAL----MLSGLPKRI---AVLDIDERLTKFIEKAAN 216 (373)
T ss_dssp TCEEEEES-CTTCHHHHH----HHHTCCSEE---EEECSCHHHHHHHHHHHH
T ss_pred CCEEEEEC-CCCHHHHHH----HHhCCCCEE---EEEECCHHHHHHHHHHHH
Confidence 35899999 999998877 33443 43 599999999999888753
No 122
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=89.75 E-value=0.23 Score=51.91 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=44.0
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCC--CcccccchHHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPE--TKVRNEAADDF 322 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~--~~~~~~d~~~~ 322 (782)
.. ++||+-||.|.++.-| ...|.++ .|||+|+..++..+.|.++ ..++.+|+..+
T Consensus 47 ~~-~VLEIG~G~G~lt~~L----~~~~~~V---~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~ 103 (271)
T 3fut_A 47 TG-PVFEVGPGLGALTRAL----LEAGAEV---TAIEKDLRLRPVLEETLSGLPVRLVFQDALLY 103 (271)
T ss_dssp CS-CEEEECCTTSHHHHHH----HHTTCCE---EEEESCGGGHHHHHHHTTTSSEEEEESCGGGS
T ss_pred CC-eEEEEeCchHHHHHHH----HHcCCEE---EEEECCHHHHHHHHHhcCCCCEEEEECChhhC
Confidence 35 8999999999999988 3456554 4999999999999999864 56777777553
No 123
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=89.47 E-value=0.28 Score=51.62 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=34.9
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
+.-.|||+|||.|.....+ ...|.+++ +||+++.+++..+.|.
T Consensus 235 ~~~~vlD~f~GsGt~~~~a----~~~g~~~~---g~e~~~~~~~~a~~r~ 277 (297)
T 2zig_A 235 VGDVVLDPFAGTGTTLIAA----ARWGRRAL---GVELVPRYAQLAKERF 277 (297)
T ss_dssp TTCEEEETTCTTTHHHHHH----HHTTCEEE---EEESCHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH----HHcCCeEE---EEeCCHHHHHHHHHHH
Confidence 3458999999999877655 67888754 9999999998888764
No 124
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=89.05 E-value=0.4 Score=52.61 Aligned_cols=49 Identities=14% Similarity=0.211 Sum_probs=33.5
Q ss_pred CCcceeccccccchhHHHHHHhhhh----------------------------------cCCceeeEEEEecCHHHHHHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASL----------------------------------SGVKLVTRWAIDINPHACKSL 305 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~----------------------------------aG~~~~~~~ave~~~~a~~t~ 305 (782)
..-.++|+|||.|++..-..+-+.. .+... .++++|+|+.|++..
T Consensus 194 ~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~-~v~GvDid~~al~~A 272 (384)
T 3ldg_A 194 PDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQL-DISGFDFDGRMVEIA 272 (384)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC-CEEEEESCHHHHHHH
T ss_pred CCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCc-eEEEEECCHHHHHHH
Confidence 3468999999999987655322111 00111 247999999999999
Q ss_pred HHhC
Q 003974 306 KFNH 309 (782)
Q Consensus 306 ~~N~ 309 (782)
+.|.
T Consensus 273 r~Na 276 (384)
T 3ldg_A 273 RKNA 276 (384)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
No 125
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=88.93 E-value=0.29 Score=50.64 Aligned_cols=55 Identities=24% Similarity=0.184 Sum_probs=41.7
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC----CCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP----ETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p----~~~~~~~d~~~ 321 (782)
...++||+.||.|.++.-| ...|.+++ ++|+++.+++..+.|.. +..++..|+.+
T Consensus 120 ~~~~vLD~GcG~G~~~~~l----~~~g~~v~---~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~ 178 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYL----SLLGYDVT---SWDHNENSIAFLNETKEKENLNISTALYDINA 178 (286)
T ss_dssp CSCEEEEESCTTCHHHHHH----HHTTCEEE---EEESCHHHHHHHHHHHHHTTCCEEEEECCGGG
T ss_pred CCCcEEEECCCCCHHHHHH----HHCCCeEE---EEECCHHHHHHHHHHHHHcCCceEEEEecccc
Confidence 3468999999999998877 45588754 99999999988877654 44555666544
No 126
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=88.91 E-value=0.36 Score=49.01 Aligned_cols=57 Identities=12% Similarity=0.188 Sum_probs=39.1
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHh-------------CCCCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFN-------------HPETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N-------------~p~~~~~~~d~~~ 321 (782)
...++||++||.|+++..+.. ...+.++ .+||+++.+++..+.| .++..++..|+.+
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~--~~~~~~v---~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~ 118 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSP--AFPEDLI---LGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMK 118 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHH--HSTTSEE---EEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTS
T ss_pred CCCEEEEEcCCCCHHHHHHHH--hCCCCCE---EEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHH
Confidence 345899999999999988732 1123444 4999999988776553 2455566666644
No 127
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=88.75 E-value=0.37 Score=48.43 Aligned_cols=57 Identities=19% Similarity=0.165 Sum_probs=44.4
Q ss_pred CCCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC--CCcccccchHHH
Q 003974 259 QPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP--ETKVRNEAADDF 322 (782)
Q Consensus 259 ~~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p--~~~~~~~d~~~~ 322 (782)
....++||+-||.|.++.-| ...|.++ .+||+++.+++..+.+.+ +..++..|+.++
T Consensus 55 ~~~~~vLD~GcG~G~~~~~l----a~~~~~v---~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~ 113 (245)
T 3ggd_A 55 NPELPLIDFACGNGTQTKFL----SQFFPRV---IGLDVSKSALEIAAKENTAANISYRLLDGLVP 113 (245)
T ss_dssp CTTSCEEEETCTTSHHHHHH----HHHSSCE---EEEESCHHHHHHHHHHSCCTTEEEEECCTTCH
T ss_pred CCCCeEEEEcCCCCHHHHHH----HHhCCCE---EEEECCHHHHHHHHHhCcccCceEEECccccc
Confidence 34568999999999999887 4456554 499999999999999876 455666676654
No 128
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=88.47 E-value=0.38 Score=49.46 Aligned_cols=43 Identities=9% Similarity=0.108 Sum_probs=35.9
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
...++||+-||.|..+.-| ...|++|+ |||+++.|++..+.++
T Consensus 68 ~~~~vLD~GCG~G~~~~~L----a~~G~~V~---gvD~S~~~i~~a~~~~ 110 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWF----ADRGHTVV---GVEISEIGIREFFAEQ 110 (252)
T ss_dssp CSCEEEETTCTTCTHHHHH----HHTTCEEE---EECSCHHHHHHHHHHT
T ss_pred CCCeEEEeCCCCcHHHHHH----HHCCCeEE---EEECCHHHHHHHHHhc
Confidence 4569999999999988777 56698764 9999999999887655
No 129
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=88.41 E-value=0.65 Score=46.50 Aligned_cols=59 Identities=14% Similarity=0.126 Sum_probs=43.3
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHh-----CCCCcccccchHHHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFN-----HPETKVRNEAADDFL 323 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N-----~p~~~~~~~d~~~~~ 323 (782)
..-++||+.||.|.++.-|.. ...+..+ .|||+++.++...+.| .++..++..|+.+++
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~--~~p~~~v---~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l 97 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAK--DRPEQDF---LGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVL 97 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHH--HCTTSEE---EEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHH
T ss_pred CCCeEEEEeeeChHHHHHHHH--HCCCCeE---EEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHH
Confidence 345899999999999887731 2234444 4999999988777665 346678888988764
No 130
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=88.16 E-value=2.5 Score=46.96 Aligned_cols=46 Identities=13% Similarity=0.014 Sum_probs=33.7
Q ss_pred CCcceeccccccchhHHHHHHhhhh-----------cCCceeeEEEEecCHHHHHHHHHh
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASL-----------SGVKLVTRWAIDINPHACKSLKFN 308 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~-----------aG~~~~~~~ave~~~~a~~t~~~N 308 (782)
...+++|.+||.|++...+..-+.. .+.. ++++|+++.++...+.|
T Consensus 171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~---i~G~Ei~~~~~~lA~~n 227 (445)
T 2okc_A 171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKA---LHGVDNTPLVVTLASMN 227 (445)
T ss_dssp TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTT---EEEEESCHHHHHHHHHH
T ss_pred CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeE---EEEEeCCHHHHHHHHHH
Confidence 3468999999999998877432211 2233 47999999999888876
No 131
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=87.92 E-value=0.54 Score=45.74 Aligned_cols=55 Identities=20% Similarity=0.209 Sum_probs=41.3
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC---CCcccccchH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP---ETKVRNEAAD 320 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p---~~~~~~~d~~ 320 (782)
...++||+.||.|.++.-+ ...|.. .+.++|+++.+++..+.|.. +..++..|+.
T Consensus 42 ~~~~vLdiGcG~G~~~~~l----~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~ 99 (215)
T 2pxx_A 42 PEDRILVLGCGNSALSYEL----FLGGFP--NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVR 99 (215)
T ss_dssp TTCCEEEETCTTCSHHHHH----HHTTCC--CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTT
T ss_pred CCCeEEEECCCCcHHHHHH----HHcCCC--cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchh
Confidence 4568999999999998877 455763 22599999999999998874 4455555543
No 132
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=87.83 E-value=0.35 Score=47.66 Aligned_cols=43 Identities=19% Similarity=0.166 Sum_probs=35.4
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
...++||+-||.|..+.-| ...|++|+ |||+++.+++..+.+.
T Consensus 22 ~~~~vLD~GCG~G~~~~~l----a~~g~~V~---gvD~S~~~l~~a~~~~ 64 (203)
T 1pjz_A 22 PGARVLVPLCGKSQDMSWL----SGQGYHVV---GAELSEAAVERYFTER 64 (203)
T ss_dssp TTCEEEETTTCCSHHHHHH----HHHCCEEE---EEEECHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCcHhHHHH----HHCCCeEE---EEeCCHHHHHHHHHHc
Confidence 3468999999999988877 34588764 9999999999888763
No 133
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=87.83 E-value=4.1 Score=46.59 Aligned_cols=49 Identities=10% Similarity=-0.002 Sum_probs=34.8
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCC-------------ceeeEEEEecCHHHHHHHHHh
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGV-------------KLVTRWAIDINPHACKSLKFN 308 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~-------------~~~~~~ave~~~~a~~t~~~N 308 (782)
...+++|.+||.|+|...+..-+...+- ....++++|+++.++...+.|
T Consensus 169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~n 230 (541)
T 2ar0_A 169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMN 230 (541)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHH
T ss_pred CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHH
Confidence 3569999999999998876432222221 012357999999999988887
No 134
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=87.62 E-value=0.24 Score=52.43 Aligned_cols=55 Identities=15% Similarity=0.142 Sum_probs=43.8
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC---CCCcccccchHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH---PETKVRNEAADDF 322 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~---p~~~~~~~d~~~~ 322 (782)
.-+|||+-||.|.++..|. ..|.+| .|||+|+..+...+.|. ++..++.+|+.++
T Consensus 51 ~~~VLEIG~G~G~lT~~La----~~~~~V---~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~ 108 (295)
T 3gru_A 51 DDVVLEIGLGKGILTEELA----KNAKKV---YVIEIDKSLEPYANKLKELYNNIEIIWGDALKV 108 (295)
T ss_dssp TCEEEEECCTTSHHHHHHH----HHSSEE---EEEESCGGGHHHHHHHHHHCSSEEEEESCTTTS
T ss_pred cCEEEEECCCchHHHHHHH----hcCCEE---EEEECCHHHHHHHHHHhccCCCeEEEECchhhC
Confidence 4589999999999999883 345554 49999999998888875 6777888887553
No 135
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=87.60 E-value=0.64 Score=48.33 Aligned_cols=57 Identities=18% Similarity=0.126 Sum_probs=43.1
Q ss_pred cceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC---------CCCcccccchHHHH
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH---------PETKVRNEAADDFL 323 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~---------p~~~~~~~d~~~~~ 323 (782)
.++|||.||.|+++.-+. +..|..- +.+||+|+.+++..+.|+ |...++.+|+..++
T Consensus 77 ~~VLdiG~G~G~~~~~l~---~~~~~~~--v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l 142 (275)
T 1iy9_A 77 EHVLVVGGGDGGVIREIL---KHPSVKK--ATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHI 142 (275)
T ss_dssp CEEEEESCTTCHHHHHHT---TCTTCSE--EEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHH
T ss_pred CEEEEECCchHHHHHHHH---hCCCCce--EEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHH
Confidence 589999999999887662 3335432 249999999999998876 45677888887764
No 136
>2ee1_A Chromodomain helicase-DNA-binding protein 4; EC 3.6.1.-, ATP- dependent helicase CHD4, CHD-4, MI-2 autoantigen 218 kDa protein, MI2-beta; NMR {Homo sapiens}
Probab=87.47 E-value=0.089 Score=42.64 Aligned_cols=55 Identities=15% Similarity=0.317 Sum_probs=37.3
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCCCCcceeEEeeccCCCCCCCccccc-ccchhhhhhHHh
Q 003974 371 NVPNEEFEVERLIAVCYGDPNKTKKPGVYFKVRWKGYGPSEDTWEPIK-GLSKCKEKLKEF 430 (782)
Q Consensus 371 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 430 (782)
.+.++.+.|+++++.... ....+.+-|.|+++..++.|||+.+ ...+..+.|..|
T Consensus 6 ~~~pe~~~VeRIi~~r~~-----~~g~~eYLVKWkgl~y~e~TWE~~~~~~~~~~~~I~~y 61 (64)
T 2ee1_A 6 SGKPEWMMIHRILNHSVD-----KKGHVHYLIKWRDLPYDQASWESEDVEIQDYDLFKQSY 61 (64)
T ss_dssp SSCCSSCCCCCCCEEEEC-----TTCCEEEEECCTTSCTTTCEEEETTCCCTTHHHHHHHH
T ss_pred ccCCCcEEEEEEEEEEec-----CCCCEEEEEEEcCCCcccCcccCCcccCcchHHHHHHH
Confidence 356666777777665321 2456788999999999999999987 222333336665
No 137
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=87.35 E-value=0.57 Score=47.21 Aligned_cols=57 Identities=18% Similarity=0.171 Sum_probs=42.4
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC-----CCCcccccchHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADDF 322 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~-----p~~~~~~~d~~~~ 322 (782)
..++||+.||.|.++.-|.. ...|.++ .+||+++.+++..+.|. ++..++.+|+.++
T Consensus 71 ~~~vLDiG~G~G~~~~~la~--~~~~~~v---~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~ 132 (240)
T 1xdz_A 71 VNTICDVGAGAGFPSLPIKI--CFPHLHV---TIVDSLNKRITFLEKLSEALQLENTTFCHDRAETF 132 (240)
T ss_dssp CCEEEEECSSSCTTHHHHHH--HCTTCEE---EEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHH
T ss_pred CCEEEEecCCCCHHHHHHHH--hCCCCEE---EEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHh
Confidence 45899999999998877732 2345654 49999999888877752 4567778887765
No 138
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=87.27 E-value=0.31 Score=47.91 Aligned_cols=55 Identities=16% Similarity=0.099 Sum_probs=42.1
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCC---CcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPE---TKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~---~~~~~~d~~~ 321 (782)
...++||+-||.|.++.-| ...|.++ .++|+++.+++..+.+... ..++..|+.+
T Consensus 51 ~~~~vLDiGcG~G~~~~~l----~~~~~~v---~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~ 108 (216)
T 3ofk_A 51 AVSNGLEIGCAAGAFTEKL----APHCKRL---TVIDVMPRAIGRACQRTKRWSHISWAATDILQ 108 (216)
T ss_dssp SEEEEEEECCTTSHHHHHH----GGGEEEE---EEEESCHHHHHHHHHHTTTCSSEEEEECCTTT
T ss_pred CCCcEEEEcCCCCHHHHHH----HHcCCEE---EEEECCHHHHHHHHHhcccCCCeEEEEcchhh
Confidence 4569999999999998877 4456554 5999999999999998754 3555555544
No 139
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=87.20 E-value=0.54 Score=46.32 Aligned_cols=54 Identities=20% Similarity=0.216 Sum_probs=41.0
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC----CCCcccccchHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH----PETKVRNEAADD 321 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~----p~~~~~~~d~~~ 321 (782)
..++|||.||.|.++.-+ ...|.++ .++|+++.+++..+.|. ++..++..|+.+
T Consensus 39 ~~~vLDlG~G~G~~~~~l----~~~~~~v---~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~ 96 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLL----EDYGFEV---VGVDISEDMIRKAREYAKSRESNVEFIVGDARK 96 (227)
T ss_dssp CCEEEEETCTTSHHHHHH----HHTTCEE---EEEESCHHHHHHHHHHHHHTTCCCEEEECCTTS
T ss_pred CCeEEEEeccCCHHHHHH----HHcCCEE---EEEECCHHHHHHHHHHHHhcCCCceEEECchhc
Confidence 568999999999988776 4556654 49999999988877764 566666666544
No 140
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=86.99 E-value=0.49 Score=47.07 Aligned_cols=55 Identities=15% Similarity=0.174 Sum_probs=44.3
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~ 321 (782)
...++||+.||.|.++.-|. ..|.++ .++|+++.+++..+.+.++..++..|+.+
T Consensus 40 ~~~~vLdiG~G~G~~~~~l~----~~~~~v---~~~D~s~~~~~~a~~~~~~~~~~~~d~~~ 94 (239)
T 3bxo_A 40 EASSLLDVACGTGTHLEHFT----KEFGDT---AGLELSEDMLTHARKRLPDATLHQGDMRD 94 (239)
T ss_dssp TCCEEEEETCTTSHHHHHHH----HHHSEE---EEEESCHHHHHHHHHHCTTCEEEECCTTT
T ss_pred CCCeEEEecccCCHHHHHHH----HhCCcE---EEEeCCHHHHHHHHHhCCCCEEEECCHHH
Confidence 34689999999999998773 344444 59999999999999999888877777654
No 141
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=86.98 E-value=0.31 Score=50.08 Aligned_cols=53 Identities=23% Similarity=0.310 Sum_probs=41.0
Q ss_pred CcceeccccccchhHHHHHHhhhhcC-CceeeEEEEecCHHHHHHHHHhCC--CCcccccchHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSG-VKLVTRWAIDINPHACKSLKFNHP--ETKVRNEAADD 321 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG-~~~~~~~ave~~~~a~~t~~~N~p--~~~~~~~d~~~ 321 (782)
.-++||+.||.|.++.-| ...| .++ .|||+|+.+++..+.| + +..++.+|+..
T Consensus 32 ~~~VLDiG~G~G~lt~~L----~~~~~~~v---~avEid~~~~~~~~~~-~~~~v~~i~~D~~~ 87 (249)
T 3ftd_A 32 GNTVVEVGGGTGNLTKVL----LQHPLKKL---YVIELDREMVENLKSI-GDERLEVINEDASK 87 (249)
T ss_dssp TCEEEEEESCHHHHHHHH----TTSCCSEE---EEECCCHHHHHHHTTS-CCTTEEEECSCTTT
T ss_pred cCEEEEEcCchHHHHHHH----HHcCCCeE---EEEECCHHHHHHHHhc-cCCCeEEEEcchhh
Confidence 458999999999999888 3445 443 5999999999999887 4 34567777654
No 142
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=86.94 E-value=0.65 Score=48.15 Aligned_cols=46 Identities=11% Similarity=0.172 Sum_probs=38.5
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPET 312 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~ 312 (782)
+..++|||.||.|.++.-| ...|.+|+ |||+++.+++..+.|....
T Consensus 45 ~g~~VLDlGcGtG~~a~~L----a~~g~~V~---gvD~S~~ml~~Ar~~~~~~ 90 (261)
T 3iv6_A 45 PGSTVAVIGASTRFLIEKA----LERGASVT---VFDFSQRMCDDLAEALADR 90 (261)
T ss_dssp TTCEEEEECTTCHHHHHHH----HHTTCEEE---EEESCHHHHHHHHHHTSSS
T ss_pred CcCEEEEEeCcchHHHHHH----HhcCCEEE---EEECCHHHHHHHHHHHHhc
Confidence 4468999999999999877 45677754 9999999999999998764
No 143
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=86.85 E-value=0.44 Score=47.54 Aligned_cols=55 Identities=25% Similarity=0.248 Sum_probs=41.9
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC--CCCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH--PETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~--p~~~~~~~d~~~ 321 (782)
+..++||+-||.|.++.-| ...|.+++ ++|+++.+++..+.+. ++..++..|+.+
T Consensus 53 ~~~~vLDiG~G~G~~~~~l----~~~~~~v~---~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~ 109 (242)
T 3l8d_A 53 KEAEVLDVGCGDGYGTYKL----SRTGYKAV---GVDISEVMIQKGKERGEGPDLSFIKGDLSS 109 (242)
T ss_dssp TTCEEEEETCTTSHHHHHH----HHTTCEEE---EEESCHHHHHHHHTTTCBTTEEEEECBTTB
T ss_pred CCCeEEEEcCCCCHHHHHH----HHcCCeEE---EEECCHHHHHHHHhhcccCCceEEEcchhc
Confidence 4569999999999998877 45587754 9999999999999884 444555555543
No 144
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=86.78 E-value=0.42 Score=49.30 Aligned_cols=44 Identities=20% Similarity=0.329 Sum_probs=35.1
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP 310 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p 310 (782)
+.-.|||+|||.|...... ...|-+++ ++|+++.+++.-+.|..
T Consensus 212 ~~~~vlD~f~GsGtt~~~a----~~~gr~~i---g~e~~~~~~~~~~~r~~ 255 (260)
T 1g60_A 212 PNDLVLDCFMGSGTTAIVA----KKLGRNFI---GCDMNAEYVNQANFVLN 255 (260)
T ss_dssp TTCEEEESSCTTCHHHHHH----HHTTCEEE---EEESCHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH----HHcCCeEE---EEeCCHHHHHHHHHHHH
Confidence 4458999999999765443 67888765 89999999998887754
No 145
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=86.67 E-value=0.33 Score=50.85 Aligned_cols=56 Identities=14% Similarity=0.182 Sum_probs=43.4
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCc----eeeEEEEecCHHHHHHHHHh-CCCCcccccchHHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVK----LVTRWAIDINPHACKSLKFN-HPETKVRNEAADDF 322 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~----~~~~~ave~~~~a~~t~~~N-~p~~~~~~~d~~~~ 322 (782)
...++||+-||.|.++..|. ..|.. + .|||+|+..++..+.| .++..++.+|+..+
T Consensus 42 ~~~~VLEIG~G~G~lt~~La----~~~~~~~~~V---~avDid~~~l~~a~~~~~~~v~~i~~D~~~~ 102 (279)
T 3uzu_A 42 RGERMVEIGPGLGALTGPVI----ARLATPGSPL---HAVELDRDLIGRLEQRFGELLELHAGDALTF 102 (279)
T ss_dssp TTCEEEEECCTTSTTHHHHH----HHHCBTTBCE---EEEECCHHHHHHHHHHHGGGEEEEESCGGGC
T ss_pred CcCEEEEEccccHHHHHHHH----HhCCCcCCeE---EEEECCHHHHHHHHHhcCCCcEEEECChhcC
Confidence 34589999999999999884 33333 4 4999999999999888 45567778887654
No 146
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=86.58 E-value=0.72 Score=46.93 Aligned_cols=57 Identities=14% Similarity=0.135 Sum_probs=42.6
Q ss_pred CcceeccccccchhHHHHHHhhhhc--CCceeeEEEEecCHHHHHHHHHhC------CCCcccccchHHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLS--GVKLVTRWAIDINPHACKSLKFNH------PETKVRNEAADDFL 323 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~a--G~~~~~~~ave~~~~a~~t~~~N~------p~~~~~~~d~~~~~ 323 (782)
..++||+.||.|+.+.-|. +.. +.++ .+||+++.+++..+.|. +...++.+|+.+++
T Consensus 64 ~~~VLdiG~G~G~~~~~la---~~~~~~~~v---~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l 128 (248)
T 3tfw_A 64 AKRILEIGTLGGYSTIWMA---RELPADGQL---LTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSL 128 (248)
T ss_dssp CSEEEEECCTTSHHHHHHH---TTSCTTCEE---EEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHH
T ss_pred CCEEEEecCCchHHHHHHH---HhCCCCCEE---EEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH
Confidence 4689999999999988773 221 4554 49999999988888774 24567788887753
No 147
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=86.27 E-value=0.97 Score=44.64 Aligned_cols=57 Identities=16% Similarity=0.101 Sum_probs=41.9
Q ss_pred CcceeccccccchhHHHHHHhhhhc--CCceeeEEEEecCHHHHHHHHHhC------CCCcccccchHHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLS--GVKLVTRWAIDINPHACKSLKFNH------PETKVRNEAADDFL 323 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~a--G~~~~~~~ave~~~~a~~t~~~N~------p~~~~~~~d~~~~~ 323 (782)
..++||+.||.|..+.-|. ... +.++ .++|+++.+++..+.|. +...++.+|+.+++
T Consensus 65 ~~~vLdiG~G~G~~~~~la---~~~~~~~~v---~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 129 (225)
T 3tr6_A 65 AKKVIDIGTFTGYSAIAMG---LALPKDGTL---ITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTL 129 (225)
T ss_dssp CSEEEEECCTTSHHHHHHH---TTCCTTCEE---EEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHH
T ss_pred CCEEEEeCCcchHHHHHHH---HhCCCCCEE---EEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHH
Confidence 3589999999999988773 221 5554 59999999988887775 23567777876654
No 148
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=86.24 E-value=0.67 Score=46.96 Aligned_cols=45 Identities=18% Similarity=0.156 Sum_probs=34.4
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
...++|||+||.|+++.-|.. +..+.++ .|+|+++.+++..+.|.
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~--~~~~~~v---~gvD~s~~~~~~a~~~~ 109 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGA--TLNGWYF---LATEVDDMCFNYAKKNV 109 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHH--HHHCCEE---EEEESCHHHHHHHHHHH
T ss_pred CCCEEEEeCCChhHHHHHHHH--hCCCCeE---EEEECCHHHHHHHHHHH
Confidence 345899999999998877632 2235554 49999999999888874
No 149
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=86.07 E-value=0.77 Score=46.98 Aligned_cols=58 Identities=17% Similarity=0.138 Sum_probs=43.2
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC-----CCCcccccchHHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADDF 322 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~-----p~~~~~~~d~~~~ 322 (782)
...++||+.||.|..+.-|.. ...+.+| .+||+++.+++..+.|. .+..++.+|++++
T Consensus 80 ~~~~vLDiG~G~G~~~i~la~--~~~~~~v---~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~ 142 (249)
T 3g89_A 80 GPLRVLDLGTGAGFPGLPLKI--VRPELEL---VLVDATRKKVAFVERAIEVLGLKGARALWGRAEVL 142 (249)
T ss_dssp SSCEEEEETCTTTTTHHHHHH--HCTTCEE---EEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHH
T ss_pred CCCEEEEEcCCCCHHHHHHHH--HCCCCEE---EEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHh
Confidence 346899999999998876631 2235554 49999999999888773 3567778888775
No 150
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=85.98 E-value=0.45 Score=48.25 Aligned_cols=49 Identities=22% Similarity=0.149 Sum_probs=35.4
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPE 311 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~ 311 (782)
...++||++||.|.++.-+...+...+.++ .|+|+++.+++..+.|...
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v---~gvDis~~~l~~A~~~~~~ 99 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQV---IASDVDPAPLELAAKNLAL 99 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEE---EEEESCHHHHHHHHHHHHT
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeE---EEEECCHHHHHHHHHHHHH
Confidence 457999999999998877632100124443 5999999999999887543
No 151
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=85.93 E-value=0.63 Score=46.24 Aligned_cols=54 Identities=13% Similarity=0.078 Sum_probs=40.6
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC---CCcccccchH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP---ETKVRNEAAD 320 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p---~~~~~~~d~~ 320 (782)
+..++||+.||.|.++.-| ...|.++ .++|+++.+++..+.|.. +..++..|+.
T Consensus 70 ~~~~vLdiG~G~G~~~~~l----~~~~~~v---~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~ 126 (231)
T 1vbf_A 70 KGQKVLEIGTGIGYYTALI----AEIVDKV---VSVEINEKMYNYASKLLSYYNNIKLILGDGT 126 (231)
T ss_dssp TTCEEEEECCTTSHHHHHH----HHHSSEE---EEEESCHHHHHHHHHHHTTCSSEEEEESCGG
T ss_pred CCCEEEEEcCCCCHHHHHH----HHHcCEE---EEEeCCHHHHHHHHHHHhhcCCeEEEECCcc
Confidence 4459999999999998877 3445444 599999999999998876 3445555543
No 152
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=85.92 E-value=0.78 Score=46.25 Aligned_cols=57 Identities=16% Similarity=0.057 Sum_probs=44.6
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~ 321 (782)
...++||+-||.|.++.-|.. ...|.++ .++|+++.+++..+.+.++..++..|+.+
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~--~~~~~~v---~~~D~s~~~~~~a~~~~~~~~~~~~d~~~ 89 (259)
T 2p35_A 33 RVLNGYDLGCGPGNSTELLTD--RYGVNVI---TGIDSDDDMLEKAADRLPNTNFGKADLAT 89 (259)
T ss_dssp CCSSEEEETCTTTHHHHHHHH--HHCTTSE---EEEESCHHHHHHHHHHSTTSEEEECCTTT
T ss_pred CCCEEEEecCcCCHHHHHHHH--hCCCCEE---EEEECCHHHHHHHHHhCCCcEEEECChhh
Confidence 446899999999999887732 1126665 49999999999999998888777777655
No 153
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=85.85 E-value=0.56 Score=48.39 Aligned_cols=55 Identities=18% Similarity=0.257 Sum_probs=42.3
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC------CCCcccccchHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH------PETKVRNEAADDF 322 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~------p~~~~~~~d~~~~ 322 (782)
..++||+-||.|.++.-| ...|.+++ ++|+++.+++..+.+. +...++..|+.++
T Consensus 69 ~~~vLDiGcG~G~~~~~l----~~~~~~v~---gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 129 (285)
T 4htf_A 69 KLRVLDAGGGEGQTAIKM----AERGHQVI---LCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDV 129 (285)
T ss_dssp CCEEEEETCTTCHHHHHH----HHTTCEEE---EEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGT
T ss_pred CCEEEEeCCcchHHHHHH----HHCCCEEE---EEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHh
Confidence 569999999999998877 34587754 9999999999888875 3445566666553
No 154
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=85.80 E-value=0.8 Score=44.75 Aligned_cols=55 Identities=11% Similarity=0.073 Sum_probs=40.4
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC-----CCCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~-----p~~~~~~~d~~~ 321 (782)
+..++||+.||.|.++.-|. ..|.++ .++|+++.+++..+.|. ++..++..|+..
T Consensus 77 ~~~~vLdiG~G~G~~~~~la----~~~~~v---~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 136 (210)
T 3lbf_A 77 PQSRVLEIGTGSGYQTAILA----HLVQHV---CSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQ 136 (210)
T ss_dssp TTCEEEEECCTTSHHHHHHH----HHSSEE---EEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG
T ss_pred CCCEEEEEcCCCCHHHHHHH----HhCCEE---EEEecCHHHHHHHHHHHHHcCCCceEEEECCccc
Confidence 45689999999999988773 336554 59999999998888774 344555656543
No 155
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=85.80 E-value=0.68 Score=46.58 Aligned_cols=55 Identities=15% Similarity=0.197 Sum_probs=41.2
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC----CCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP----ETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p----~~~~~~~d~~~ 321 (782)
+..++|||.||.|.++.-| ...|.++ .++|+++.+++..+.|.. ...++..|+.+
T Consensus 41 ~~~~vLDlGcG~G~~~~~l----~~~~~~v---~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~ 99 (252)
T 1wzn_A 41 EVRRVLDLACGTGIPTLEL----AERGYEV---VGLDLHEEMLRVARRKAKERNLKIEFLQGDVLE 99 (252)
T ss_dssp CCCEEEEETCTTCHHHHHH----HHTTCEE---EEEESCHHHHHHHHHHHHHTTCCCEEEESCGGG
T ss_pred CCCEEEEeCCCCCHHHHHH----HHCCCeE---EEEECCHHHHHHHHHHHHhcCCceEEEECChhh
Confidence 3458999999999998877 4458765 499999999888877642 34556666544
No 156
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=85.76 E-value=0.89 Score=45.16 Aligned_cols=54 Identities=15% Similarity=0.044 Sum_probs=43.0
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC-CCcccccchHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP-ETKVRNEAADD 321 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p-~~~~~~~d~~~ 321 (782)
..++||+-||.|.++.-| ...|.++ .++|+++.+++..+.+.+ +..++..|+.+
T Consensus 43 ~~~vLDiGcG~G~~~~~l----~~~~~~v---~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~ 97 (250)
T 2p7i_A 43 PGNLLELGSFKGDFTSRL----QEHFNDI---TCVEASEEAISHAQGRLKDGITYIHSRFED 97 (250)
T ss_dssp SSCEEEESCTTSHHHHHH----TTTCSCE---EEEESCHHHHHHHHHHSCSCEEEEESCGGG
T ss_pred CCcEEEECCCCCHHHHHH----HHhCCcE---EEEeCCHHHHHHHHHhhhCCeEEEEccHHH
Confidence 458999999999998877 4567664 499999999999999887 55666666654
No 157
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=85.75 E-value=0.65 Score=43.67 Aligned_cols=52 Identities=25% Similarity=0.213 Sum_probs=41.7
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccc
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEA 318 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d 318 (782)
+..++||+-||.|.++.-| ...|.++ .++|+++.+++..+.+.++..++..|
T Consensus 17 ~~~~vLDiG~G~G~~~~~l----~~~~~~v---~~vD~s~~~~~~a~~~~~~v~~~~~d 68 (170)
T 3i9f_A 17 KKGVIVDYGCGNGFYCKYL----LEFATKL---YCIDINVIALKEVKEKFDSVITLSDP 68 (170)
T ss_dssp CCEEEEEETCTTCTTHHHH----HTTEEEE---EEECSCHHHHHHHHHHCTTSEEESSG
T ss_pred CCCeEEEECCCCCHHHHHH----HhhcCeE---EEEeCCHHHHHHHHHhCCCcEEEeCC
Confidence 4568999999999999877 3444333 59999999999999998877777655
No 158
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=85.47 E-value=1.2 Score=44.02 Aligned_cols=58 Identities=17% Similarity=0.122 Sum_probs=42.7
Q ss_pred CCcceeccccccchhHHHHHHhhhhc--CCceeeEEEEecCHHHHHHHHHhCC------CCcccccchHHHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLS--GVKLVTRWAIDINPHACKSLKFNHP------ETKVRNEAADDFL 323 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~a--G~~~~~~~ave~~~~a~~t~~~N~p------~~~~~~~d~~~~~ 323 (782)
...++||+.||.|+.+.-|. +.. |.++ .++|+++.+++..+.|.. ...++.+|+.+++
T Consensus 58 ~~~~vLdiG~G~G~~~~~la---~~~~~~~~v---~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 123 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLA---RGLSSGGRV---VTLEASEKHADIARSNIERANLNDRVEVRTGLALDSL 123 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHH---TTCCSSCEE---EEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHH
T ss_pred CCCEEEEecCCccHHHHHHH---HhCCCCCEE---EEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH
Confidence 34589999999999998773 221 5554 499999999888877642 2567778887654
No 159
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=85.36 E-value=0.82 Score=46.07 Aligned_cols=56 Identities=21% Similarity=0.208 Sum_probs=42.8
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC--CCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP--ETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p--~~~~~~~d~~~ 321 (782)
...++|||-||.|.++.-| ...|.. .+.++|+++.+++..+.+.. +..++..|+.+
T Consensus 44 ~~~~vLD~GcG~G~~~~~l----~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~ 101 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYA----AEHGAK--KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIED 101 (253)
T ss_dssp TTCEEEEETCTTCHHHHHH----HHTTCS--EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGG
T ss_pred CCCEEEEECCCCCHHHHHH----HHcCCC--EEEEEECCHHHHHHHHHhhccCCeEEEEcchhh
Confidence 4579999999999988877 456763 22599999999999998874 45566666644
No 160
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=85.12 E-value=0.53 Score=45.97 Aligned_cols=54 Identities=20% Similarity=0.173 Sum_probs=41.6
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC-CCCcccccchHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-PETKVRNEAADD 321 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~-p~~~~~~~d~~~ 321 (782)
..++||+.||.|.++.-| ...|.+++ ++|+++.+++..+.+. ++..++..|+.+
T Consensus 47 ~~~vLdiG~G~G~~~~~l----~~~~~~v~---~~D~s~~~~~~a~~~~~~~~~~~~~d~~~ 101 (218)
T 3ou2_A 47 RGDVLELASGTGYWTRHL----SGLADRVT---ALDGSAEMIAEAGRHGLDNVEFRQQDLFD 101 (218)
T ss_dssp CSEEEEESCTTSHHHHHH----HHHSSEEE---EEESCHHHHHHHGGGCCTTEEEEECCTTS
T ss_pred CCeEEEECCCCCHHHHHH----HhcCCeEE---EEeCCHHHHHHHHhcCCCCeEEEeccccc
Confidence 349999999999998877 34477654 9999999999888754 566666666644
No 161
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=85.11 E-value=0.91 Score=43.11 Aligned_cols=43 Identities=30% Similarity=0.239 Sum_probs=34.5
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
+..++||+.||.|.++.-+. ..|.++ .++|+++.+++..+.|.
T Consensus 52 ~~~~vLdiG~G~G~~~~~~~----~~~~~v---~~~D~~~~~~~~a~~~~ 94 (194)
T 1dus_A 52 KDDDILDLGCGYGVIGIALA----DEVKST---TMADINRRAIKLAKENI 94 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHG----GGSSEE---EEEESCHHHHHHHHHHH
T ss_pred CCCeEEEeCCCCCHHHHHHH----HcCCeE---EEEECCHHHHHHHHHHH
Confidence 45689999999999988773 336664 49999999999888775
No 162
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=85.09 E-value=1.2 Score=48.42 Aligned_cols=58 Identities=17% Similarity=0.056 Sum_probs=44.0
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCC-------------CcccccchHHHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPE-------------TKVRNEAADDFL 323 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~-------------~~~~~~d~~~~~ 323 (782)
...+||+|++|.|++..-+ ...+.. .+.+||+|+.+++..+.|+|. ..++.+|+..|+
T Consensus 188 ~pkrVL~IGgG~G~~arel----lk~~~~--~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L 258 (364)
T 2qfm_A 188 TGKDVLILGGGDGGILCEI----VKLKPK--MVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVL 258 (364)
T ss_dssp TTCEEEEEECTTCHHHHHH----HTTCCS--EEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHH
T ss_pred CCCEEEEEECChhHHHHHH----HHCCCC--EEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHH
Confidence 3569999999999987654 233433 234899999999999999873 467788988875
No 163
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=85.06 E-value=0.79 Score=45.91 Aligned_cols=57 Identities=12% Similarity=0.138 Sum_probs=43.3
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC----CCCcccccchHHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH----PETKVRNEAADDF 322 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~----p~~~~~~~d~~~~ 322 (782)
...++||+-||.|.++.-| ...|.. .+.++|+++.+++..+.+. ++..++.+|+.++
T Consensus 60 ~~~~vLDiGcGtG~~~~~l----~~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~ 120 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKV----QEAPID--EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV 120 (236)
T ss_dssp TCEEEEEECCTTSHHHHHH----HTSCEE--EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHH
T ss_pred CCCeEEEEeccCCHHHHHH----HhcCCC--eEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHh
Confidence 4579999999999988877 344543 2369999999998888876 4456677777665
No 164
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=84.91 E-value=0.86 Score=47.36 Aligned_cols=43 Identities=28% Similarity=0.301 Sum_probs=34.2
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEec-CHHHHHHHHHhC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDI-NPHACKSLKFNH 309 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~-~~~a~~t~~~N~ 309 (782)
..++|||.||.|.++..+ ...|..- +.|+|+ ++.+++..+.|.
T Consensus 80 ~~~vLDlG~G~G~~~~~~----a~~~~~~--v~~~D~s~~~~~~~a~~n~ 123 (281)
T 3bzb_A 80 GKTVCELGAGAGLVSIVA----FLAGADQ--VVATDYPDPEILNSLESNI 123 (281)
T ss_dssp TCEEEETTCTTSHHHHHH----HHTTCSE--EEEEECSCHHHHHHHHHHH
T ss_pred CCeEEEecccccHHHHHH----HHcCCCE--EEEEeCCCHHHHHHHHHHH
Confidence 348999999999988766 4457532 259999 999999998875
No 165
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=84.65 E-value=1.2 Score=46.37 Aligned_cols=56 Identities=14% Similarity=0.103 Sum_probs=41.3
Q ss_pred cceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC---------------CCCcccccchHHHH
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH---------------PETKVRNEAADDFL 323 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~---------------p~~~~~~~d~~~~~ 323 (782)
.++|||.||.|+++.-+. +. |.. .+.+||+|+.+++..+.|+ +...++.+|+.+++
T Consensus 77 ~~VLdiG~G~G~~~~~l~---~~-~~~--~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l 147 (281)
T 1mjf_A 77 KRVLVIGGGDGGTVREVL---QH-DVD--EVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFI 147 (281)
T ss_dssp CEEEEEECTTSHHHHHHT---TS-CCS--EEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHH
T ss_pred CeEEEEcCCcCHHHHHHH---hC-CCC--EEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHh
Confidence 489999999999888772 33 543 2359999999999988876 33456677776653
No 166
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=84.43 E-value=0.85 Score=49.75 Aligned_cols=44 Identities=27% Similarity=0.328 Sum_probs=35.1
Q ss_pred CcceeccccccchhHHHHHHhhhhc-CCceeeEEEEecCHHHHHHHHHhCC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLS-GVKLVTRWAIDINPHACKSLKFNHP 310 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~a-G~~~~~~~ave~~~~a~~t~~~N~p 310 (782)
..++|||+||.|.++.-+. +.. |.++ .+||+++.+++..+.|..
T Consensus 223 ~~~VLDlGcG~G~~s~~la---~~~p~~~V---~gvD~s~~al~~Ar~n~~ 267 (375)
T 4dcm_A 223 EGEIVDLGCGNGVIGLTLL---DKNPQAKV---VFVDESPMAVASSRLNVE 267 (375)
T ss_dssp CSEEEEETCTTCHHHHHHH---HHCTTCEE---EEEESCHHHHHHHHHHHH
T ss_pred CCeEEEEeCcchHHHHHHH---HHCCCCEE---EEEECcHHHHHHHHHHHH
Confidence 3689999999999998873 222 5554 499999999999988754
No 167
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=84.30 E-value=0.8 Score=43.95 Aligned_cols=54 Identities=22% Similarity=0.148 Sum_probs=39.7
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC-----CCCcccccchHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADD 321 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~-----p~~~~~~~d~~~ 321 (782)
..++||+.||.|.++.-| ...|.++ .++|+++.+++..+.+. ++..++..|+.+
T Consensus 33 ~~~vLdiG~G~G~~~~~l----~~~~~~v---~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~ 91 (199)
T 2xvm_A 33 PGKTLDLGCGNGRNSLYL----AANGYDV---DAWDKNAMSIANVERIKSIENLDNLHTRVVDLNN 91 (199)
T ss_dssp SCEEEEETCTTSHHHHHH----HHTTCEE---EEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGG
T ss_pred CCeEEEEcCCCCHHHHHH----HHCCCeE---EEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhh
Confidence 459999999999988777 3457765 49999999988877653 244555555544
No 168
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=84.13 E-value=1.2 Score=44.65 Aligned_cols=53 Identities=21% Similarity=0.184 Sum_probs=42.5
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchHHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDF 322 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~~ 322 (782)
...++||+-||.|.++.-| ...|.++ .++|+++.+++..+.+ ..++..|+.++
T Consensus 41 ~~~~vLDiGcG~G~~~~~l----~~~~~~v---~gvD~s~~~~~~a~~~---~~~~~~d~~~~ 93 (240)
T 3dli_A 41 GCRRVLDIGCGRGEFLELC----KEEGIES---IGVDINEDMIKFCEGK---FNVVKSDAIEY 93 (240)
T ss_dssp TCSCEEEETCTTTHHHHHH----HHHTCCE---EEECSCHHHHHHHHTT---SEEECSCHHHH
T ss_pred CCCeEEEEeCCCCHHHHHH----HhCCCcE---EEEECCHHHHHHHHhh---cceeeccHHHH
Confidence 3468999999999998776 3458775 4999999999998887 56677777765
No 169
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=84.04 E-value=0.72 Score=44.72 Aligned_cols=52 Identities=19% Similarity=0.121 Sum_probs=38.8
Q ss_pred ceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC----CCcccccchHH
Q 003974 263 SLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP----ETKVRNEAADD 321 (782)
Q Consensus 263 ~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p----~~~~~~~d~~~ 321 (782)
++||+.||.|.++.-| ...|.++ .++|+++.+++..+.+.. +..++..|+.+
T Consensus 32 ~vLdiGcG~G~~~~~l----~~~~~~v---~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~ 87 (202)
T 2kw5_A 32 KILCLAEGEGRNACFL----ASLGYEV---TAVDQSSVGLAKAKQLAQEKGVKITTVQSNLAD 87 (202)
T ss_dssp EEEECCCSCTHHHHHH----HTTTCEE---EEECSSHHHHHHHHHHHHHHTCCEEEECCBTTT
T ss_pred CEEEECCCCCHhHHHH----HhCCCeE---EEEECCHHHHHHHHHHHHhcCCceEEEEcChhh
Confidence 9999999999998777 4557765 499999999888777642 44455555433
No 170
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=83.82 E-value=0.75 Score=47.47 Aligned_cols=55 Identities=18% Similarity=0.199 Sum_probs=39.2
Q ss_pred CCcceeccccccchhHHHHHHhhhh--cCCceeeEEEEecCHHHHHHHHHhC------CCCcccccchH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASL--SGVKLVTRWAIDINPHACKSLKFNH------PETKVRNEAAD 320 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~--aG~~~~~~~ave~~~~a~~t~~~N~------p~~~~~~~d~~ 320 (782)
+..++||+.||.|+++.-+. +. .+.++ .++|+++.+++..+.|. ++..+...|+.
T Consensus 110 ~~~~VLD~G~G~G~~~~~la---~~~~~~~~v---~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~ 172 (275)
T 1yb2_A 110 PGMDILEVGVGSGNMSSYIL---YALNGKGTL---TVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIA 172 (275)
T ss_dssp TTCEEEEECCTTSHHHHHHH---HHHTTSSEE---EEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTT
T ss_pred CcCEEEEecCCCCHHHHHHH---HHcCCCCEE---EEEECCHHHHHHHHHHHHhcCCCCcEEEEECchh
Confidence 44689999999999988773 22 25554 49999999998888774 23445555543
No 171
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=83.78 E-value=0.94 Score=45.67 Aligned_cols=55 Identities=20% Similarity=0.258 Sum_probs=41.7
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC----CCCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH----PETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~----p~~~~~~~d~~~ 321 (782)
...++||+.||.|.++.-| ...|.++ .++|+++.+++..+.+. ++..+...|+.+
T Consensus 39 ~~~~vLDiG~G~G~~~~~l----~~~~~~v---~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~ 97 (263)
T 2yqz_A 39 EEPVFLELGVGTGRIALPL----IARGYRY---IALDADAAMLEVFRQKIAGVDRKVQVVQADARA 97 (263)
T ss_dssp SCCEEEEETCTTSTTHHHH----HTTTCEE---EEEESCHHHHHHHHHHTTTSCTTEEEEESCTTS
T ss_pred CCCEEEEeCCcCCHHHHHH----HHCCCEE---EEEECCHHHHHHHHHHhhccCCceEEEEccccc
Confidence 3468999999999998877 3457664 49999999999998884 455556656543
No 172
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=83.68 E-value=1.2 Score=45.73 Aligned_cols=55 Identities=22% Similarity=0.320 Sum_probs=44.9
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~ 321 (782)
...++||+-||.|.++.-|. ..|.++ .++|+++.+++..+.+.++..+...|+.+
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~----~~~~~v---~gvD~s~~~~~~a~~~~~~~~~~~~d~~~ 111 (279)
T 3ccf_A 57 PGEFILDLGCGTGQLTEKIA----QSGAEV---LGTDNAATMIEKARQNYPHLHFDVADARN 111 (279)
T ss_dssp TTCEEEEETCTTSHHHHHHH----HTTCEE---EEEESCHHHHHHHHHHCTTSCEEECCTTT
T ss_pred CCCEEEEecCCCCHHHHHHH----hCCCeE---EEEECCHHHHHHHHhhCCCCEEEECChhh
Confidence 44689999999999988773 367665 49999999999999998887777777655
No 173
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=83.66 E-value=1.3 Score=43.73 Aligned_cols=46 Identities=26% Similarity=0.350 Sum_probs=37.9
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPET 312 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~ 312 (782)
+..++||+.||.|.++.-| ...|.++ .++|+++.+++..+.+....
T Consensus 30 ~~~~vLdiG~G~G~~~~~l----~~~~~~v---~~vD~s~~~~~~a~~~~~~~ 75 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLEL----ASKGYSV---TGIDINSEAIRLAETAARSP 75 (235)
T ss_dssp TTCEEEEETCTTSHHHHHH----HHTTCEE---EEEESCHHHHHHHHHHTTCC
T ss_pred CCCeEEEECCCCCHHHHHH----HhCCCeE---EEEECCHHHHHHHHHHHHhc
Confidence 4569999999999988877 3457765 49999999999999987653
No 174
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=83.38 E-value=0.99 Score=45.49 Aligned_cols=56 Identities=16% Similarity=0.093 Sum_probs=42.2
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC---CCCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH---PETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~---p~~~~~~~d~~~ 321 (782)
+..++||+-||.|.++.-|. ...|.+++ ++|+++.+++..+.+. +...++..|+.+
T Consensus 55 ~~~~vLdiG~G~G~~~~~l~---~~~~~~v~---~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~ 113 (266)
T 3ujc_A 55 ENSKVLDIGSGLGGGCMYIN---EKYGAHTH---GIDICSNIVNMANERVSGNNKIIFEANDILT 113 (266)
T ss_dssp TTCEEEEETCTTSHHHHHHH---HHHCCEEE---EEESCHHHHHHHHHTCCSCTTEEEEECCTTT
T ss_pred CCCEEEEECCCCCHHHHHHH---HHcCCEEE---EEeCCHHHHHHHHHHhhcCCCeEEEECcccc
Confidence 45699999999999998874 22276654 9999999999999887 344555656543
No 175
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=83.29 E-value=0.95 Score=45.40 Aligned_cols=57 Identities=14% Similarity=0.115 Sum_probs=41.7
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC------CCCcccccchHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH------PETKVRNEAADDF 322 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~------p~~~~~~~d~~~~ 322 (782)
..++||+.||.|..+.-|.. ...+.++ .+||+++.+++..+.|. ++..++.+|+.++
T Consensus 72 ~~~vLDiG~G~G~~~~~la~--~~~~~~v---~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 134 (232)
T 3ntv_A 72 VKNILEIGTAIGYSSMQFAS--ISDDIHV---TTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQ 134 (232)
T ss_dssp CCEEEEECCSSSHHHHHHHT--TCTTCEE---EEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGC
T ss_pred CCEEEEEeCchhHHHHHHHH--hCCCCEE---EEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHH
Confidence 45899999999999988732 1124554 59999999988888775 2456777777654
No 176
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=83.07 E-value=1.4 Score=43.71 Aligned_cols=55 Identities=15% Similarity=0.225 Sum_probs=41.7
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCC-ceeeEEEEecCHHHHHHHHHhCCC--CcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGV-KLVTRWAIDINPHACKSLKFNHPE--TKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~-~~~~~~ave~~~~a~~t~~~N~p~--~~~~~~d~~~ 321 (782)
...++||+.||.|.++.-| ...|. ++ .++|+++.+++..+.+... ..++..|+.+
T Consensus 43 ~~~~vLdiG~G~G~~~~~l----~~~~~~~v---~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~ 100 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWA----HEHGASYV---LGLDLSEKMLARARAAGPDTGITYERADLDK 100 (243)
T ss_dssp TTCEEEEETCTTCHHHHHH----HHTTCSEE---EEEESCHHHHHHHHHTSCSSSEEEEECCGGG
T ss_pred CCCEEEEEcCcCCHHHHHH----HHCCCCeE---EEEcCCHHHHHHHHHhcccCCceEEEcChhh
Confidence 4569999999999988877 44576 44 5999999999999998764 3445555544
No 177
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=82.97 E-value=0.88 Score=46.52 Aligned_cols=43 Identities=28% Similarity=0.406 Sum_probs=35.0
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
...++||+.||.|.++..+ ...|.++ .|+|+++.+++..+.|.
T Consensus 120 ~~~~VLDiGcG~G~l~~~l----a~~g~~v---~gvDi~~~~v~~a~~n~ 162 (254)
T 2nxc_A 120 PGDKVLDLGTGSGVLAIAA----EKLGGKA---LGVDIDPMVLPQAEANA 162 (254)
T ss_dssp TTCEEEEETCTTSHHHHHH----HHTTCEE---EEEESCGGGHHHHHHHH
T ss_pred CCCEEEEecCCCcHHHHHH----HHhCCeE---EEEECCHHHHHHHHHHH
Confidence 4468999999999988776 4567654 59999999999988874
No 178
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=82.88 E-value=1 Score=45.51 Aligned_cols=56 Identities=14% Similarity=0.151 Sum_probs=40.6
Q ss_pred CCcceeccccccchhHHHHHHhhhhc--CCceeeEEEEecCHHHHHHHHHhC-----CC-CcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLS--GVKLVTRWAIDINPHACKSLKFNH-----PE-TKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~a--G~~~~~~~ave~~~~a~~t~~~N~-----p~-~~~~~~d~~~ 321 (782)
+..++||+.||.|.++.-+. +.. +.++ .++|+++.+++..+.|. ++ ..++..|+.+
T Consensus 93 ~~~~vldiG~G~G~~~~~l~---~~~~~~~~v---~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 156 (255)
T 3mb5_A 93 PGDFIVEAGVGSGALTLFLA---NIVGPEGRV---VSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYE 156 (255)
T ss_dssp TTCEEEEECCTTSHHHHHHH---HHHCTTSEE---EEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGG
T ss_pred CCCEEEEecCCchHHHHHHH---HHhCCCeEE---EEEecCHHHHHHHHHHHHHcCCCCceEEEECchhh
Confidence 34589999999999998873 221 4444 59999999988888874 33 5566666544
No 179
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=82.86 E-value=0.98 Score=46.99 Aligned_cols=57 Identities=14% Similarity=0.158 Sum_probs=42.5
Q ss_pred CCcceeccccccchhHHHHHHhhh-hcCCceeeEEEEecCHHHHHHHHHh-------CCCCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGAS-LSGVKLVTRWAIDINPHACKSLKFN-------HPETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~-~aG~~~~~~~ave~~~~a~~t~~~N-------~p~~~~~~~d~~~ 321 (782)
...++||+-||.|.++.-|.. . ..+.++ .++|+++.+++..+.+ .++..++..|+++
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~--~~~~~~~v---~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 100 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQ--ELKPFEQI---IGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDD 100 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHH--HSSCCSEE---EEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTC
T ss_pred CCCEEEEECCCCCHHHHHHHH--hCCCCCEE---EEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHh
Confidence 457999999999999887731 1 245554 4999999998888876 5666667777654
No 180
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=82.70 E-value=1.1 Score=43.95 Aligned_cols=44 Identities=16% Similarity=0.130 Sum_probs=35.2
Q ss_pred CCcceeccccccchhHHHHHHhhhhcC--CceeeEEEEecCHHHHHHHHHhCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSG--VKLVTRWAIDINPHACKSLKFNHP 310 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG--~~~~~~~ave~~~~a~~t~~~N~p 310 (782)
...++||+-||.|.++.-| ...| .++ .++|+++.+++..+.+.+
T Consensus 29 ~~~~vLDiGcG~G~~~~~l----~~~~~~~~v---~gvD~s~~~~~~a~~~~~ 74 (219)
T 3jwg_A 29 NAKKVIDLGCGEGNLLSLL----LKDKSFEQI---TGVDVSYSVLERAKDRLK 74 (219)
T ss_dssp TCCEEEEETCTTCHHHHHH----HTSTTCCEE---EEEESCHHHHHHHHHHHT
T ss_pred CCCEEEEecCCCCHHHHHH----HhcCCCCEE---EEEECCHHHHHHHHHHHH
Confidence 3459999999999998877 3444 343 599999999999998865
No 181
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=82.64 E-value=1.4 Score=43.63 Aligned_cols=59 Identities=14% Similarity=0.077 Sum_probs=41.6
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC------CCCcccccchHHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH------PETKVRNEAADDFL 323 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~------p~~~~~~~d~~~~~ 323 (782)
..++||+.||.|.++.-|.... ..+.++ .++|+++.+++..+.|. +...++.+|+.+++
T Consensus 70 ~~~vLdiG~G~G~~~~~la~~~-~~~~~v---~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~ 134 (229)
T 2avd_A 70 AKKALDLGTFTGYSALALALAL-PADGRV---VTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETL 134 (229)
T ss_dssp CCEEEEECCTTSHHHHHHHTTS-CTTCEE---EEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHH
T ss_pred CCEEEEEcCCccHHHHHHHHhC-CCCCEE---EEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHH
Confidence 3589999999999888773210 014444 59999999988887774 34567777876653
No 182
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=82.52 E-value=1.5 Score=46.59 Aligned_cols=57 Identities=21% Similarity=0.265 Sum_probs=42.4
Q ss_pred CcceeccccccchhHHHHHHhhhhcC-CceeeEEEEecCHHHHHHHHHhCCC---------CcccccchHHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSG-VKLVTRWAIDINPHACKSLKFNHPE---------TKVRNEAADDFL 323 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG-~~~~~~~ave~~~~a~~t~~~N~p~---------~~~~~~d~~~~~ 323 (782)
..++|||.||.|+++.-+. +..+ .++ .+||+++.+++..+.|.+. ..++.+|+.+++
T Consensus 117 ~~~VLdiG~G~G~~~~~l~---~~~~~~~v---~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l 183 (321)
T 2pt6_A 117 PKNVLVVGGGDGGIIRELC---KYKSVENI---DICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFL 183 (321)
T ss_dssp CCEEEEEECTTCHHHHHHT---TCTTCCEE---EEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHH
T ss_pred CCEEEEEcCCccHHHHHHH---HcCCCCEE---EEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHH
Confidence 3589999999999888772 2323 343 4999999999999998754 456677776653
No 183
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=82.42 E-value=0.94 Score=44.94 Aligned_cols=56 Identities=20% Similarity=0.234 Sum_probs=38.8
Q ss_pred CCcceeccccccchhHHHHHHhhhhcC--CceeeEEEEecCHHHHHHHHHhC---CCCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSG--VKLVTRWAIDINPHACKSLKFNH---PETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG--~~~~~~~ave~~~~a~~t~~~N~---p~~~~~~~d~~~ 321 (782)
...++||++||.|.++.-|. ...| .++ .++|+++.+++....|. ++..++..|+.+
T Consensus 73 ~~~~vLDlG~G~G~~~~~la---~~~~~~~~v---~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~ 133 (227)
T 1g8a_A 73 PGKSVLYLGIASGTTASHVS---DIVGWEGKI---FGIEFSPRVLRELVPIVEERRNIVPILGDATK 133 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHH---HHHCTTSEE---EEEESCHHHHHHHHHHHSSCTTEEEEECCTTC
T ss_pred CCCEEEEEeccCCHHHHHHH---HHhCCCeEE---EEEECCHHHHHHHHHHHhccCCCEEEEccCCC
Confidence 34589999999999998774 3333 343 59999998777766653 455555666543
No 184
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=82.40 E-value=1.2 Score=46.03 Aligned_cols=43 Identities=21% Similarity=0.160 Sum_probs=35.0
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
...++|||-||.|.++.-| ...|.++ .++|+++.+++..+.|.
T Consensus 57 ~~~~vLDiGcG~G~~~~~l----~~~~~~v---~gvD~s~~~l~~a~~~~ 99 (293)
T 3thr_A 57 GCHRVLDVACGTGVDSIML----VEEGFSV---TSVDASDKMLKYALKER 99 (293)
T ss_dssp TCCEEEETTCTTSHHHHHH----HHTTCEE---EEEESCHHHHHHHHHHH
T ss_pred CCCEEEEecCCCCHHHHHH----HHCCCeE---EEEECCHHHHHHHHHhh
Confidence 3468999999999998877 4568765 49999999998887653
No 185
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=82.26 E-value=0.81 Score=45.88 Aligned_cols=58 Identities=12% Similarity=0.073 Sum_probs=42.2
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC-------CCcccccchHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP-------ETKVRNEAADDF 322 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p-------~~~~~~~d~~~~ 322 (782)
..++||+.||+|..+.-|..++ ..|.++ .+||+++..++..+.|.. ...++.+|+.++
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~-~~~~~v---~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~ 121 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGL-ADNTTL---TCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDV 121 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHS-CTTSEE---EEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHH
T ss_pred CCCEEEEcCCchHHHHHHHHhC-CCCCEE---EEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHH
Confidence 3589999999999998874221 124554 499999999888887752 356677777665
No 186
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=82.21 E-value=1.4 Score=42.90 Aligned_cols=45 Identities=20% Similarity=0.291 Sum_probs=34.8
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP 310 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p 310 (782)
+..++||+.||.|.++.-| ...|.. .+.++|+++.+++..+.|..
T Consensus 60 ~~~~vLDiG~G~G~~~~~l----~~~~~~--~v~~vD~s~~~~~~a~~~~~ 104 (205)
T 3grz_A 60 KPLTVADVGTGSGILAIAA----HKLGAK--SVLATDISDESMTAAEENAA 104 (205)
T ss_dssp SCCEEEEETCTTSHHHHHH----HHTTCS--EEEEEESCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHH----HHCCCC--EEEEEECCHHHHHHHHHHHH
Confidence 4469999999999988776 345653 23599999999988888753
No 187
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=82.19 E-value=1.1 Score=42.16 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=34.4
Q ss_pred CCcceeccccccchhHHHHHHhhhhc-CCceeeEEEEecCHHHHHHHHHhCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLS-GVKLVTRWAIDINPHACKSLKFNHP 310 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~a-G~~~~~~~ave~~~~a~~t~~~N~p 310 (782)
+..++||+.||.|.++.-+. ... |.++ .++|+++.+++..+.|..
T Consensus 25 ~~~~vldiG~G~G~~~~~l~---~~~~~~~v---~~vD~~~~~~~~a~~~~~ 70 (178)
T 3hm2_A 25 PHETLWDIGGGSGSIAIEWL---RSTPQTTA---VCFEISEERRERILSNAI 70 (178)
T ss_dssp TTEEEEEESTTTTHHHHHHH---TTSSSEEE---EEECSCHHHHHHHHHHHH
T ss_pred CCCeEEEeCCCCCHHHHHHH---HHCCCCeE---EEEeCCHHHHHHHHHHHH
Confidence 45689999999999888773 222 4443 599999999998887743
No 188
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=81.95 E-value=0.95 Score=46.64 Aligned_cols=55 Identities=18% Similarity=0.197 Sum_probs=39.1
Q ss_pred CcceeccccccchhHHHHHHhhhhc--CCceeeEEEEecCHHHHHHHHHhC------CCCcccccchHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLS--GVKLVTRWAIDINPHACKSLKFNH------PETKVRNEAADD 321 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~a--G~~~~~~~ave~~~~a~~t~~~N~------p~~~~~~~d~~~ 321 (782)
..++||++||.|.++.-+. +.. +.++ .++|+++.+++..+.|. +...++..|+.+
T Consensus 113 ~~~VLDiG~G~G~~~~~la---~~~~~~~~v---~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 175 (277)
T 1o54_A 113 GDRIIDTGVGSGAMCAVLA---RAVGSSGKV---FAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE 175 (277)
T ss_dssp TCEEEEECCTTSHHHHHHH---HHTTTTCEE---EEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG
T ss_pred CCEEEEECCcCCHHHHHHH---HHhCCCcEE---EEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHH
Confidence 4589999999999988773 332 3444 59999999999988884 234445555433
No 189
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=81.95 E-value=1.4 Score=44.04 Aligned_cols=55 Identities=15% Similarity=0.154 Sum_probs=38.2
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC---CCcccccch
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP---ETKVRNEAA 319 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p---~~~~~~~d~ 319 (782)
...++|||.||.|.++.-|. ...|-. .+.|||+++.+++..+.|.. +...+.+|+
T Consensus 74 ~~~~VLDlGcG~G~~~~~la---~~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~ 131 (230)
T 1fbn_A 74 RDSKILYLGASAGTTPSHVA---DIADKG--IVYAIEYAPRIMRELLDACAERENIIPILGDA 131 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHH---HHTTTS--EEEEEESCHHHHHHHHHHTTTCTTEEEEECCT
T ss_pred CCCEEEEEcccCCHHHHHHH---HHcCCc--EEEEEECCHHHHHHHHHHhhcCCCeEEEECCC
Confidence 44689999999999887773 444521 23699999999988877743 333444444
No 190
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=81.87 E-value=1.3 Score=43.53 Aligned_cols=46 Identities=13% Similarity=0.039 Sum_probs=35.0
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP 310 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p 310 (782)
...++||+-||.|.++.-| ...|-.. .+.++|+++.+++..+.|..
T Consensus 29 ~~~~vLDiGcG~G~~~~~l----~~~~~~~-~v~gvD~s~~~~~~a~~~~~ 74 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKIL----LKDSFFE-QITGVDVSYRSLEIAQERLD 74 (217)
T ss_dssp TCCEEEEETCTTCHHHHHH----HHCTTCS-EEEEEESCHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCHHHHHH----HhhCCCC-EEEEEECCHHHHHHHHHHHH
Confidence 3459999999999999877 3344211 23599999999999998865
No 191
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=81.62 E-value=0.64 Score=48.44 Aligned_cols=52 Identities=13% Similarity=0.244 Sum_probs=40.8
Q ss_pred ceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCC--------CcccccchHH
Q 003974 263 SLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPE--------TKVRNEAADD 321 (782)
Q Consensus 263 ~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~--------~~~~~~d~~~ 321 (782)
++|||.||.|.++.-| ...|.+++ ++|+++.+++..+.+.+. ..++..|+.+
T Consensus 85 ~vLDlGcG~G~~~~~l----~~~~~~v~---gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~ 144 (299)
T 3g2m_A 85 PVLELAAGMGRLTFPF----LDLGWEVT---ALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSA 144 (299)
T ss_dssp CEEEETCTTTTTHHHH----HTTTCCEE---EEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTB
T ss_pred cEEEEeccCCHHHHHH----HHcCCeEE---EEECCHHHHHHHHHHHhhcccccccceEEEeCchhc
Confidence 8999999999999888 45587754 999999999998887653 3455666544
No 192
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=81.59 E-value=0.62 Score=45.60 Aligned_cols=49 Identities=12% Similarity=0.068 Sum_probs=35.4
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~ 321 (782)
+..+||||.||.|+++.-+. ..+..| .|||+++.+ ..++..++.+|+.+
T Consensus 25 ~g~~VLDlG~G~G~~s~~la----~~~~~V---~gvD~~~~~------~~~~v~~~~~D~~~ 73 (191)
T 3dou_A 25 KGDAVIEIGSSPGGWTQVLN----SLARKI---ISIDLQEME------EIAGVRFIRCDIFK 73 (191)
T ss_dssp TTCEEEEESCTTCHHHHHHT----TTCSEE---EEEESSCCC------CCTTCEEEECCTTS
T ss_pred CCCEEEEEeecCCHHHHHHH----HcCCcE---EEEeccccc------cCCCeEEEEccccC
Confidence 45799999999999998773 335554 499999853 34566677777654
No 193
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=81.48 E-value=1.4 Score=43.14 Aligned_cols=58 Identities=9% Similarity=-0.028 Sum_probs=40.7
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC------CCcccccchHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP------ETKVRNEAADDF 322 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p------~~~~~~~d~~~~ 322 (782)
..++||+.||.|..+.-|...+ ..|.++ .++|+++.+++..+.|.. ...++.+|+.++
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~-~~~~~v---~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 120 (210)
T 3c3p_A 57 PQLVVVPGDGLGCASWWFARAI-SISSRV---VMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGI 120 (210)
T ss_dssp CSEEEEESCGGGHHHHHHHTTS-CTTCEE---EEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHH
T ss_pred CCEEEEEcCCccHHHHHHHHhC-CCCCEE---EEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHH
Confidence 3589999999999998874211 014554 599999999988887753 244566676554
No 194
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=81.40 E-value=1.9 Score=45.44 Aligned_cols=58 Identities=19% Similarity=0.187 Sum_probs=43.2
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC---------CCCcccccchHHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH---------PETKVRNEAADDFL 323 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~---------p~~~~~~~d~~~~~ 323 (782)
..+||||-||.|+++.-+. +..+.. .+.+||+++.+++..+.+. +...++.+|+..++
T Consensus 96 ~~~VLdiG~G~G~~~~~l~---~~~~~~--~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~ 162 (304)
T 3bwc_A 96 PERVLIIGGGDGGVLREVL---RHGTVE--HCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFV 162 (304)
T ss_dssp CCEEEEEECTTSHHHHHHH---TCTTCC--EEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHH
T ss_pred CCeEEEEcCCCCHHHHHHH---hCCCCC--EEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHH
Confidence 4589999999999988773 232332 2359999999999988876 45677788887763
No 195
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=81.12 E-value=1.3 Score=44.99 Aligned_cols=53 Identities=21% Similarity=0.194 Sum_probs=40.6
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAAD 320 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~ 320 (782)
...++||+-||.|.++.-| ...|.++ .++|+++.+++..+.+... .++..|+.
T Consensus 54 ~~~~vLDiGcG~G~~~~~l----~~~~~~v---~gvD~s~~~l~~a~~~~~~-~~~~~d~~ 106 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFL----QERGFEV---VLVDPSKEMLEVAREKGVK-NVVEAKAE 106 (260)
T ss_dssp SCCEEEEETCTTCHHHHHH----HTTTCEE---EEEESCHHHHHHHHHHTCS-CEEECCTT
T ss_pred CCCeEEEeCCCcCHHHHHH----HHcCCeE---EEEeCCHHHHHHHHhhcCC-CEEECcHH
Confidence 3458999999999998877 4557765 4999999999999988763 24555543
No 196
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=81.06 E-value=1.2 Score=43.31 Aligned_cols=52 Identities=17% Similarity=0.144 Sum_probs=40.7
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCC-ceeeEEEEecCHHHHHHHHHhCCCCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGV-KLVTRWAIDINPHACKSLKFNHPETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~-~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~ 321 (782)
...++||+.||.|.++.-| |. ++ .++|+++.+++..+.+.++..++..|+.+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-------~~~~v---~~vD~s~~~~~~a~~~~~~~~~~~~d~~~ 88 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-------PYPQK---VGVEPSEAMLAVGRRRAPEATWVRAWGEA 88 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-------CCSEE---EEECCCHHHHHHHHHHCTTSEEECCCTTS
T ss_pred CCCeEEEECCCCCHhHHhC-------CCCeE---EEEeCCHHHHHHHHHhCCCcEEEEccccc
Confidence 4569999999999876422 66 44 59999999999999998777777777654
No 197
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=81.02 E-value=1 Score=45.87 Aligned_cols=56 Identities=14% Similarity=0.081 Sum_probs=40.6
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC------CCCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH------PETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~------p~~~~~~~d~~~ 321 (782)
+..++||+-||.|.++.-|. ...+.++ .++|+++.+++..+.+. +...++..|+.+
T Consensus 46 ~~~~vLDiGcG~G~~~~~la---~~~~~~v---~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 107 (267)
T 3kkz_A 46 EKSLIADIGCGTGGQTMVLA---GHVTGQV---TGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDD 107 (267)
T ss_dssp TTCEEEEETCTTCHHHHHHH---TTCSSEE---EEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred CCCEEEEeCCCCCHHHHHHH---hccCCEE---EEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhh
Confidence 45799999999999998773 3333354 49999999988887774 335566666544
No 198
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=81.00 E-value=1.2 Score=45.90 Aligned_cols=59 Identities=20% Similarity=0.236 Sum_probs=41.0
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC------CCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP------ETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p------~~~~~~~d~~~ 321 (782)
+..++|||-||.|.++.-|.......|++++ |||+++..++..+.+.. ...++.+|+.+
T Consensus 70 ~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~---gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~ 134 (261)
T 4gek_A 70 PGTQVYDLGCSLGAATLSVRRNIHHDNCKII---AIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRD 134 (261)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTCCSSSCEEE---EEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTT
T ss_pred CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEE---EEECCHHHHHHHHHHHHhhccCceEEEeeccccc
Confidence 4458999999999998877422223466754 99999998888777632 23455566544
No 199
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=80.61 E-value=1.3 Score=44.39 Aligned_cols=56 Identities=14% Similarity=0.182 Sum_probs=40.6
Q ss_pred CCCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC-----CCCcccccchHH
Q 003974 259 QPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADD 321 (782)
Q Consensus 259 ~~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~-----p~~~~~~~d~~~ 321 (782)
.+..++||+.||.|.++.-| ...|.++ .++|+++.+++..+.+. ++..+...|+++
T Consensus 20 ~~~~~vLDiGcG~G~~~~~l----~~~~~~v---~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 80 (239)
T 1xxl_A 20 RAEHRVLDIGAGAGHTALAF----SPYVQEC---IGVDATKEMVEVASSFAQEKGVENVRFQQGTAES 80 (239)
T ss_dssp CTTCEEEEESCTTSHHHHHH----GGGSSEE---EEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTB
T ss_pred CCCCEEEEEccCcCHHHHHH----HHhCCEE---EEEECCHHHHHHHHHHHHHcCCCCeEEEeccccc
Confidence 34568999999999988877 3455554 59999999988877653 455555656543
No 200
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=80.55 E-value=1.9 Score=45.92 Aligned_cols=58 Identities=10% Similarity=0.130 Sum_probs=45.1
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC-----CCcccccchHHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP-----ETKVRNEAADDFL 323 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p-----~~~~~~~d~~~~~ 323 (782)
+++||||-||.|++..-+.. ...+.+++ +||+|+..++..+.+++ ...++.+|+..++
T Consensus 90 ~~rVLdIG~G~G~la~~la~--~~p~~~v~---~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l 152 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFAD--VYPQSRNT---VVELDAELARLSREWFDIPRAPRVKIRVDDARMVA 152 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHH--HSTTCEEE---EEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHH
T ss_pred CCEEEEEECCcCHHHHHHHH--HCCCcEEE---EEECCHHHHHHHHHhccccCCCceEEEECcHHHHH
Confidence 46999999999988876621 13567654 89999999999999875 4567888988774
No 201
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=80.44 E-value=1.2 Score=44.35 Aligned_cols=56 Identities=16% Similarity=0.194 Sum_probs=37.3
Q ss_pred CCcceeccccccchhHHHHHHhhhhcC--CceeeEEEEecCHHHHHHHHHhC---CCCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSG--VKLVTRWAIDINPHACKSLKFNH---PETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG--~~~~~~~ave~~~~a~~t~~~N~---p~~~~~~~d~~~ 321 (782)
...++|||.||.|+++.-|. +..| .++ .|||+++.+++.+..+. ++..++..|+.+
T Consensus 77 ~~~~vLDlG~G~G~~~~~la---~~~g~~~~v---~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~ 137 (233)
T 2ipx_A 77 PGAKVLYLGAASGTTVSHVS---DIVGPDGLV---YAVEFSHRSGRDLINLAKKRTNIIPVIEDARH 137 (233)
T ss_dssp TTCEEEEECCTTSHHHHHHH---HHHCTTCEE---EEECCCHHHHHHHHHHHHHCTTEEEECSCTTC
T ss_pred CCCEEEEEcccCCHHHHHHH---HHhCCCcEE---EEEECCHHHHHHHHHHhhccCCeEEEEcccCC
Confidence 34589999999999998774 3332 443 59999987544443332 556666666654
No 202
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=80.23 E-value=1.9 Score=42.66 Aligned_cols=45 Identities=20% Similarity=0.069 Sum_probs=34.9
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
..-+||||=||.|-+++-+ ....=.+ .+||+|+|+.+++..+.|.
T Consensus 49 ~~~~VLDlGCG~GplAl~l----~~~~p~a-~~~A~Di~~~~leiar~~~ 93 (200)
T 3fzg_A 49 HVSSILDFGCGFNPLALYQ----WNENEKI-IYHAYDIDRAEIAFLSSII 93 (200)
T ss_dssp CCSEEEEETCTTHHHHHHH----HCSSCCC-EEEEECSCHHHHHHHHHHH
T ss_pred CCCeEEEecCCCCHHHHHH----HhcCCCC-EEEEEeCCHHHHHHHHHHH
Confidence 3569999999999988877 2331122 4589999999999999885
No 203
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=80.05 E-value=1.5 Score=48.45 Aligned_cols=59 Identities=15% Similarity=0.157 Sum_probs=41.9
Q ss_pred CCCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHh--------------CCCCcccccchHHH
Q 003974 259 QPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFN--------------HPETKVRNEAADDF 322 (782)
Q Consensus 259 ~~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N--------------~p~~~~~~~d~~~~ 322 (782)
.+.-++|||-||.|.+..-+. ...|..- ++|||+++.+++.-+.| .+...++.+|+.++
T Consensus 172 ~~gd~VLDLGCGtG~l~l~lA---~~~g~~k--VvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~l 244 (438)
T 3uwp_A 172 TDDDLFVDLGSGVGQVVLQVA---AATNCKH--HYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSE 244 (438)
T ss_dssp CTTCEEEEESCTTSHHHHHHH---HHCCCSE--EEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSH
T ss_pred CCCCEEEEeCCCCCHHHHHHH---HHCCCCE--EEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCC
Confidence 345689999999999988763 4567652 25999999887776654 24556667776553
No 204
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=79.98 E-value=1.5 Score=44.06 Aligned_cols=56 Identities=16% Similarity=0.219 Sum_probs=39.8
Q ss_pred CCcceeccccccchhHHHHHHhhhhc--CCceeeEEEEecCHHHHHHHHHhC------CCCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLS--GVKLVTRWAIDINPHACKSLKFNH------PETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~a--G~~~~~~~ave~~~~a~~t~~~N~------p~~~~~~~d~~~ 321 (782)
+..++||+.||.|.++.-|. +.. +.++ .++|+++.+++..+.|. +...+...|+.+
T Consensus 96 ~~~~vLdiG~G~G~~~~~l~---~~~~~~~~v---~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~ 159 (258)
T 2pwy_A 96 PGMRVLEAGTGSGGLTLFLA---RAVGEKGLV---ESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEE 159 (258)
T ss_dssp TTCEEEEECCTTSHHHHHHH---HHHCTTSEE---EEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGG
T ss_pred CCCEEEEECCCcCHHHHHHH---HHhCCCCEE---EEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhh
Confidence 34589999999999988773 231 4454 59999999998888774 344555555543
No 205
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=79.88 E-value=0.82 Score=47.66 Aligned_cols=56 Identities=20% Similarity=0.268 Sum_probs=41.4
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC------CCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP------ETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p------~~~~~~~d~~~ 321 (782)
+..++||+-||.|+++.-|. +..|.++ .++|+++.+++..+.+.. ...++..|+.+
T Consensus 72 ~~~~vLDiGcG~G~~~~~la---~~~~~~v---~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 133 (302)
T 3hem_A 72 PGMTLLDIGCGWGSTMRHAV---AEYDVNV---IGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE 133 (302)
T ss_dssp TTCEEEEETCTTSHHHHHHH---HHHCCEE---EEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGG
T ss_pred CcCEEEEeeccCcHHHHHHH---HhCCCEE---EEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHH
Confidence 45689999999999998773 3337665 499999999888877743 34466666654
No 206
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=79.62 E-value=2.2 Score=45.72 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=26.2
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPH 300 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~ 300 (782)
+..++||+.||.|.++.-+ ..+|..- +.|||+++.
T Consensus 50 ~~~~VLDiGcGtG~ls~~l----a~~g~~~--V~~vD~s~~ 84 (348)
T 2y1w_A 50 KDKIVLDVGCGSGILSFFA----AQAGARK--IYAVEASTM 84 (348)
T ss_dssp TTCEEEEETCTTSHHHHHH----HHTTCSE--EEEEECSTH
T ss_pred CcCEEEEcCCCccHHHHHH----HhCCCCE--EEEECCHHH
Confidence 3458999999999988766 4567532 259999963
No 207
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=79.56 E-value=2.2 Score=44.92 Aligned_cols=57 Identities=12% Similarity=0.112 Sum_probs=42.0
Q ss_pred cceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC---------CCCcccccchHHHH
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH---------PETKVRNEAADDFL 323 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~---------p~~~~~~~d~~~~~ 323 (782)
.++|||.||.|+++.-+. +..+.. .+.+||+|+.+++..+.|+ +...++.+|+.+++
T Consensus 97 ~~VLdiG~G~G~~~~~l~---~~~~~~--~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l 162 (304)
T 2o07_A 97 RKVLIIGGGDGGVLREVV---KHPSVE--SVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFM 162 (304)
T ss_dssp CEEEEEECTTSHHHHHHT---TCTTCC--EEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHH
T ss_pred CEEEEECCCchHHHHHHH---HcCCCC--EEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHH
Confidence 589999999999888762 222322 2359999999999888875 44567788887764
No 208
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=79.34 E-value=1.9 Score=42.63 Aligned_cols=45 Identities=20% Similarity=0.275 Sum_probs=33.6
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
..++|||.||.|..+.-|...+ ..|.++ .+||+++.+++..+.|.
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~-~~~~~v---~~vD~~~~~~~~a~~~~ 103 (221)
T 3u81_A 59 PSLVLELGAYCGYSAVRMARLL-QPGARL---LTMEINPDCAAITQQML 103 (221)
T ss_dssp CSEEEEECCTTSHHHHHHHTTS-CTTCEE---EEEESCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHhC-CCCCEE---EEEeCChHHHHHHHHHH
Confidence 3589999999999998773210 125554 49999999998888764
No 209
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=79.18 E-value=1.6 Score=50.18 Aligned_cols=58 Identities=21% Similarity=0.323 Sum_probs=45.5
Q ss_pred CCCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC---C--CCcccccchHHHH
Q 003974 259 QPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH---P--ETKVRNEAADDFL 323 (782)
Q Consensus 259 ~~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~---p--~~~~~~~d~~~~~ 323 (782)
.++++|||+=||.|-+|..| ...|.+|+ +||..+.+++.-+... + +...+..+++++.
T Consensus 65 ~~~~~vLDvGCG~G~~~~~l----a~~ga~V~---giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~ 127 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSL----ASKGATIV---GIDFQQENINVCRALAEENPDFAAEFRVGRIEEVI 127 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHH----HHTTCEEE---EEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHH
T ss_pred CCCCeEEEECCCCcHHHHHH----HhCCCEEE---EECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHh
Confidence 35689999999999999888 67899875 9999999988766543 2 3456677888763
No 210
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=78.83 E-value=1.5 Score=43.88 Aligned_cols=42 Identities=21% Similarity=0.368 Sum_probs=33.4
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
..++||+.||.|.++.-+. +. +.++ .++|+++.+++..+.|.
T Consensus 92 ~~~vldiG~G~G~~~~~l~---~~-~~~v---~~vD~~~~~~~~a~~~~ 133 (248)
T 2yvl_A 92 EKRVLEFGTGSGALLAVLS---EV-AGEV---WTFEAVEEFYKTAQKNL 133 (248)
T ss_dssp TCEEEEECCTTSHHHHHHH---HH-SSEE---EEECSCHHHHHHHHHHH
T ss_pred CCEEEEeCCCccHHHHHHH---Hh-CCEE---EEEecCHHHHHHHHHHH
Confidence 3589999999999888773 23 6554 49999999999888874
No 211
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=78.73 E-value=1.8 Score=43.11 Aligned_cols=56 Identities=7% Similarity=0.071 Sum_probs=40.7
Q ss_pred CcceeccccccchhHHHHHHhhhhc-CCceeeEEEEecCHHHHHHHHHhC------CCCcccccchHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLS-GVKLVTRWAIDINPHACKSLKFNH------PETKVRNEAADDF 322 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~a-G~~~~~~~ave~~~~a~~t~~~N~------p~~~~~~~d~~~~ 322 (782)
..++||+.||.|.++.-|. +.. |.++ .++|+++.+++..+.|. +...++..|+.++
T Consensus 55 ~~~vLdiG~G~G~~~~~la---~~~~~~~v---~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 117 (233)
T 2gpy_A 55 PARILEIGTAIGYSAIRMA---QALPEATI---VSIERDERRYEEAHKHVKALGLESRIELLFGDALQL 117 (233)
T ss_dssp CSEEEEECCTTSHHHHHHH---HHCTTCEE---EEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGS
T ss_pred CCEEEEecCCCcHHHHHHH---HHCCCCEE---EEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHH
Confidence 3589999999999988774 222 4554 49999999998888874 2345666676553
No 212
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=78.71 E-value=2.5 Score=41.65 Aligned_cols=43 Identities=14% Similarity=0.110 Sum_probs=33.0
Q ss_pred CCcceeccccccchhHHHHHHhhhhcC------CceeeEEEEecCHHHHHHHHHh
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSG------VKLVTRWAIDINPHACKSLKFN 308 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG------~~~~~~~ave~~~~a~~t~~~N 308 (782)
+..++||+.||.|.++.-|. +..| .++ .++|+++.+++..+.|
T Consensus 80 ~~~~VLdiG~G~G~~~~~la---~~~~~~~~~~~~v---~~vD~~~~~~~~a~~~ 128 (227)
T 2pbf_A 80 PGSRAIDVGSGSGYLTVCMA---IKMNVLENKNSYV---IGLERVKDLVNFSLEN 128 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHH---HHTTTTTCTTCEE---EEEESCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHH---HHhcccCCCCCEE---EEEeCCHHHHHHHHHH
Confidence 34699999999999887774 3333 243 5999999998888777
No 213
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=78.70 E-value=1.7 Score=42.10 Aligned_cols=44 Identities=16% Similarity=0.132 Sum_probs=34.0
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
..++||+.||.|.++.-+.. ...+.++ .++|+++.+++..+.|.
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~--~~~~~~v---~~vD~s~~~~~~a~~~~ 109 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSI--VRPEAHF---TLLDSLGKRVRFLRQVQ 109 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHH--HCTTSEE---EEEESCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHH--HCCCCEE---EEEeCCHHHHHHHHHHH
Confidence 35899999999999887742 1235554 49999999999888864
No 214
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=78.65 E-value=1.4 Score=42.87 Aligned_cols=53 Identities=23% Similarity=0.289 Sum_probs=39.0
Q ss_pred ceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC------CCCcccccchHH
Q 003974 263 SLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH------PETKVRNEAADD 321 (782)
Q Consensus 263 ~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~------p~~~~~~~d~~~ 321 (782)
++||+.||.|.++.-|. +..|.++ .++|+++.+++..+.+. ++..++..|+.+
T Consensus 46 ~vLdiG~G~G~~~~~l~---~~~~~~v---~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 104 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALA---KQSDFSI---RALDFSKHMNEIALKNIADANLNDRIQIVQGDVHN 104 (219)
T ss_dssp EEEEETCTTSHHHHHHH---HHSEEEE---EEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTB
T ss_pred EEEEECCCCCHHHHHHH---HcCCCeE---EEEECCHHHHHHHHHHHHhccccCceEEEEcCHHH
Confidence 99999999999988773 3345554 49999999998888873 344555555543
No 215
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=78.62 E-value=1.6 Score=45.84 Aligned_cols=57 Identities=18% Similarity=0.184 Sum_probs=41.4
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC----------CCCcccccchHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH----------PETKVRNEAADDF 322 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~----------p~~~~~~~d~~~~ 322 (782)
..+||||.||.|+++.-+. +..+.. .+.+||+|+.+++..+.|+ |...++.+|+..+
T Consensus 84 ~~~VLdiG~G~G~~~~~l~---~~~~~~--~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~ 150 (294)
T 3adn_A 84 AKHVLIIGGGDGAMLREVT---RHKNVE--SITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNF 150 (294)
T ss_dssp CCEEEEESCTTCHHHHHHH---TCTTCC--EEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC-
T ss_pred CCEEEEEeCChhHHHHHHH---hCCCCC--EEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHH
Confidence 3589999999999887762 333443 2359999999999888875 3456777777665
No 216
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=78.43 E-value=1.3 Score=45.43 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=35.4
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCC-ceeeEEEEecCHHHHHHHHHhCCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGV-KLVTRWAIDINPHACKSLKFNHPE 311 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~-~~~~~~ave~~~~a~~t~~~N~p~ 311 (782)
+..++||+.||.|.++.-| ...|. ++ .++|+++.+++..+.+.+.
T Consensus 64 ~~~~vLDiGcG~G~~~~~l----~~~~~~~v---~gvD~s~~~~~~a~~~~~~ 109 (298)
T 1ri5_A 64 RGDSVLDLGCGKGGDLLKY----ERAGIGEY---YGVDIAEVSINDARVRARN 109 (298)
T ss_dssp TTCEEEEETCTTTTTHHHH----HHHTCSEE---EEEESCHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCHHHHHH----HHCCCCEE---EEEECCHHHHHHHHHHHHh
Confidence 4469999999999988776 34465 43 5999999999988887654
No 217
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=78.19 E-value=0.14 Score=52.27 Aligned_cols=55 Identities=11% Similarity=0.152 Sum_probs=40.5
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC---CCCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH---PETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~---p~~~~~~~d~~~ 321 (782)
...++||+.||.|+++.-|. ..|.++ .|||+++.+++..+.|. ++..++.+|+.+
T Consensus 29 ~~~~VLDiG~G~G~~~~~l~----~~~~~v---~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~ 86 (245)
T 1yub_A 29 ETDTVYEIGTGKGHLTTKLA----KISKQV---TSIELDSHLFNLSSEKLKLNTRVTLIHQDILQ 86 (245)
T ss_dssp SSEEEEECSCCCSSCSHHHH----HHSSEE---EESSSSCSSSSSSSCTTTTCSEEEECCSCCTT
T ss_pred CCCEEEEEeCCCCHHHHHHH----HhCCeE---EEEECCHHHHHHHHHHhccCCceEEEECChhh
Confidence 34589999999999998883 445554 49999999887777665 345566666654
No 218
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=78.00 E-value=0.78 Score=45.18 Aligned_cols=57 Identities=14% Similarity=0.085 Sum_probs=37.1
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHH---------HhCCCCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLK---------FNHPETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~---------~N~p~~~~~~~d~~~ 321 (782)
...++||+.||.|.++.-|.. ...|.++ .+||+++.+++.+. ...++..++..|+.+
T Consensus 27 ~~~~vLDiGcG~G~~~~~la~--~~p~~~v---~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 92 (218)
T 3mq2_A 27 YDDVVLDVGTGDGKHPYKVAR--QNPSRLV---VALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAER 92 (218)
T ss_dssp SSEEEEEESCTTCHHHHHHHH--HCTTEEE---EEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTT
T ss_pred CCCEEEEecCCCCHHHHHHHH--HCCCCEE---EEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhh
Confidence 456899999999999987732 1115554 49999998655431 123345555666544
No 219
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=77.86 E-value=2.2 Score=43.63 Aligned_cols=56 Identities=14% Similarity=0.188 Sum_probs=39.6
Q ss_pred CCcceeccccccchhHHHHHHhhhhc--CCceeeEEEEecCHHHHHHHHHhC--------CCCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLS--GVKLVTRWAIDINPHACKSLKFNH--------PETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~a--G~~~~~~~ave~~~~a~~t~~~N~--------p~~~~~~~d~~~ 321 (782)
+..++||+.||.|.++.-|. +.. +.++ .++|+++.+++..+.|. ++..+...|+.+
T Consensus 99 ~~~~vLdiG~G~G~~~~~l~---~~~~~~~~v---~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~ 164 (280)
T 1i9g_A 99 PGARVLEAGAGSGALTLSLL---RAVGPAGQV---ISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD 164 (280)
T ss_dssp TTCEEEEECCTTSHHHHHHH---HHHCTTSEE---EEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG
T ss_pred CCCEEEEEcccccHHHHHHH---HHhCCCCEE---EEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHh
Confidence 34589999999999988773 222 4444 59999999988888773 344555656544
No 220
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=77.82 E-value=1.5 Score=45.00 Aligned_cols=54 Identities=9% Similarity=0.059 Sum_probs=40.8
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC---CCcccccchHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP---ETKVRNEAADD 321 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p---~~~~~~~d~~~ 321 (782)
.-++||+-||.|.++. +. . |-+. .+.|||+|+..+...+.|.. +..++.+|+..
T Consensus 22 ~~~VLEIG~G~G~lt~-l~----~-~~~~-~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~ 78 (252)
T 1qyr_A 22 GQAMVEIGPGLAALTE-PV----G-ERLD-QLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMT 78 (252)
T ss_dssp TCCEEEECCTTTTTHH-HH----H-TTCS-CEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGG
T ss_pred cCEEEEECCCCcHHHH-hh----h-CCCC-eEEEEECCHHHHHHHHHHhccCCceEEEECchhh
Confidence 3589999999999999 72 3 3331 02599999999999998864 45677777755
No 221
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=77.81 E-value=2.2 Score=43.32 Aligned_cols=57 Identities=14% Similarity=0.248 Sum_probs=44.2
Q ss_pred CCCcceeccccccchhHHHHHHhhhh-cCCceeeEEEEecCHHHHHHHHHhCCCCcccccchHH
Q 003974 259 QPEMSLLDLYSGCGAMSTGLCIGASL-SGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADD 321 (782)
Q Consensus 259 ~~~~~~ldlf~G~Gg~s~Gl~~g~~~-aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~ 321 (782)
....++||+-||.|.++.-+. +. .|.++ .++|+++.+++..+.+.++..+...|+.+
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~---~~~~~~~v---~~vD~s~~~~~~a~~~~~~~~~~~~d~~~ 141 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFA---DALPEITT---FGLDVSKVAIKAAAKRYPQVTFCVASSHR 141 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHH---HTCTTSEE---EEEESCHHHHHHHHHHCTTSEEEECCTTS
T ss_pred CCCCEEEEECCCCCHHHHHHH---HhCCCCeE---EEEeCCHHHHHHHHHhCCCcEEEEcchhh
Confidence 345689999999999888773 22 26664 49999999999999998887777766544
No 222
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=77.77 E-value=1.9 Score=43.26 Aligned_cols=56 Identities=23% Similarity=0.237 Sum_probs=40.1
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC------CCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP------ETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p------~~~~~~~d~~~ 321 (782)
+..++||+-||.|.++.-|. +..|.++ .++|+++.+++..+.+.. +..++..|+.+
T Consensus 36 ~~~~VLDiGcG~G~~~~~la---~~~~~~v---~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 97 (256)
T 1nkv_A 36 PGTRILDLGSGSGEMLCTWA---RDHGITG---TGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG 97 (256)
T ss_dssp TTCEEEEETCTTCHHHHHHH---HHTCCEE---EEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT
T ss_pred CCCEEEEECCCCCHHHHHHH---HhcCCeE---EEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHh
Confidence 44689999999999888773 3347665 499999999888877642 34455555443
No 223
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=77.67 E-value=2.9 Score=44.82 Aligned_cols=56 Identities=14% Similarity=0.132 Sum_probs=42.3
Q ss_pred cceeccccccchhHHHHHHhhhhcC-CceeeEEEEecCHHHHHHHHHhCC---------CCcccccchHHHH
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSG-VKLVTRWAIDINPHACKSLKFNHP---------ETKVRNEAADDFL 323 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG-~~~~~~~ave~~~~a~~t~~~N~p---------~~~~~~~d~~~~~ 323 (782)
.++|||-||.|+++.-|. +..+ .++ .+||+++.+++..+.|++ ...++.+|+.+++
T Consensus 122 ~~VLdIG~G~G~~a~~la---~~~~~~~V---~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l 187 (334)
T 1xj5_A 122 KKVLVIGGGDGGVLREVA---RHASIEQI---DMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFL 187 (334)
T ss_dssp CEEEEETCSSSHHHHHHT---TCTTCCEE---EEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHH
T ss_pred CEEEEECCCccHHHHHHH---HcCCCCEE---EEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHH
Confidence 589999999999888773 2222 343 599999999999888763 4567788877653
No 224
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=77.66 E-value=2.4 Score=42.81 Aligned_cols=44 Identities=20% Similarity=0.055 Sum_probs=34.9
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
..+++|+.||.|-++..+ ...|-.. .++|+|+++.|++.-+.|.
T Consensus 16 g~~VlDIGtGsG~l~i~l----a~~~~~~-~V~avDi~~~al~~A~~N~ 59 (225)
T 3kr9_A 16 GAILLDVGSDHAYLPIEL----VERGQIK-SAIAGEVVEGPYQSAVKNV 59 (225)
T ss_dssp TEEEEEETCSTTHHHHHH----HHTTSEE-EEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHH----HHhCCCC-EEEEEECCHHHHHHHHHHH
Confidence 358999999999998877 4455322 2369999999999999884
No 225
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=77.62 E-value=1.3 Score=43.38 Aligned_cols=56 Identities=20% Similarity=0.239 Sum_probs=39.6
Q ss_pred CCcceeccccccchhHHHHHHhhhhc--CCceeeEEEEecCHHHHHHHHHhC-----CCCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLS--GVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~a--G~~~~~~~ave~~~~a~~t~~~N~-----p~~~~~~~d~~~ 321 (782)
...++||+.||.|.++.-+. +.. +.++ .++|+++.+++..+.+. ++..++..|+.+
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~---~~~~~~~~v---~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~ 99 (219)
T 3dh0_A 37 EGMTVLDVGTGAGFYLPYLS---KMVGEKGKV---YAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENK 99 (219)
T ss_dssp TTCEEEESSCTTCTTHHHHH---HHHTTTCEE---EEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTB
T ss_pred CCCEEEEEecCCCHHHHHHH---HHhCCCcEE---EEEECCHHHHHHHHHHHHHcCCCcEEEEeccccc
Confidence 44699999999999988773 222 2443 59999999988887764 345555555543
No 226
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=77.22 E-value=2.1 Score=44.88 Aligned_cols=44 Identities=14% Similarity=0.116 Sum_probs=34.7
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
+..++||+.||.|.++.-|. +..|.++ .++|+++.+++..+.|.
T Consensus 117 ~~~~vLDiGcG~G~~~~~la---~~~~~~v---~gvD~s~~~~~~a~~~~ 160 (312)
T 3vc1_A 117 PDDTLVDAGCGRGGSMVMAH---RRFGSRV---EGVTLSAAQADFGNRRA 160 (312)
T ss_dssp TTCEEEEESCTTSHHHHHHH---HHHCCEE---EEEESCHHHHHHHHHHH
T ss_pred CCCEEEEecCCCCHHHHHHH---HHcCCEE---EEEeCCHHHHHHHHHHH
Confidence 45689999999999998773 2237765 49999999988887764
No 227
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=77.09 E-value=3 Score=44.08 Aligned_cols=56 Identities=20% Similarity=0.166 Sum_probs=41.7
Q ss_pred cceeccccccchhHHHHHHhhhhc-CCceeeEEEEecCHHHHHHHHHhC----------CCCcccccchHHHH
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLS-GVKLVTRWAIDINPHACKSLKFNH----------PETKVRNEAADDFL 323 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~a-G~~~~~~~ave~~~~a~~t~~~N~----------p~~~~~~~d~~~~~ 323 (782)
.++|||-||.|+++.-+. +.. +.++ .+||+|+.+++..+.|+ |...++.+|+.+++
T Consensus 79 ~~VLdiG~G~G~~~~~l~---~~~~~~~v---~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l 145 (314)
T 1uir_A 79 KRVLIVGGGEGATLREVL---KHPTVEKA---VMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYL 145 (314)
T ss_dssp CEEEEEECTTSHHHHHHT---TSTTCCEE---EEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHH
T ss_pred CeEEEEcCCcCHHHHHHH---hcCCCCEE---EEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHH
Confidence 589999999999887662 222 3343 49999999998887765 34567788887764
No 228
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=77.07 E-value=1.1 Score=45.09 Aligned_cols=55 Identities=18% Similarity=0.188 Sum_probs=39.0
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCC------CcccccchH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPE------TKVRNEAAD 320 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~------~~~~~~d~~ 320 (782)
+..++||+-||.|.++.-|. +..+.++ .++|+++.+++..+.|... ..++..|+.
T Consensus 46 ~~~~vLDiG~G~G~~~~~l~---~~~~~~v---~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 106 (257)
T 3f4k_A 46 DDAKIADIGCGTGGQTLFLA---DYVKGQI---TGIDLFPDFIEIFNENAVKANCADRVKGITGSMD 106 (257)
T ss_dssp TTCEEEEETCTTSHHHHHHH---HHCCSEE---EEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred CCCeEEEeCCCCCHHHHHHH---HhCCCeE---EEEECCHHHHHHHHHHHHHcCCCCceEEEECChh
Confidence 34599999999999988773 3333344 5999999999888777432 445555553
No 229
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=76.86 E-value=2.1 Score=48.25 Aligned_cols=41 Identities=17% Similarity=0.288 Sum_probs=29.2
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHh
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFN 308 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N 308 (782)
..++||+.||.|.++.-+ ...|.. .+.|||+++ +++..+.|
T Consensus 159 ~~~VLDiGcGtG~la~~l----a~~~~~--~V~gvD~s~-~l~~A~~~ 199 (480)
T 3b3j_A 159 DKIVLDVGCGSGILSFFA----AQAGAR--KIYAVEAST-MAQHAEVL 199 (480)
T ss_dssp TCEEEEESCSTTHHHHHH----HHTTCS--EEEEEECHH-HHHHHHHH
T ss_pred CCEEEEecCcccHHHHHH----HHcCCC--EEEEEEcHH-HHHHHHHH
Confidence 458999999999988765 345643 225999998 65555544
No 230
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=76.69 E-value=2.7 Score=43.09 Aligned_cols=45 Identities=9% Similarity=-0.095 Sum_probs=35.4
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
+.-+++|+.||.|-++..+ ...|-.. .++|+|+++.|++.-+.|.
T Consensus 21 ~g~~VlDIGtGsG~l~i~l----a~~~~~~-~V~avDi~~~al~~A~~N~ 65 (244)
T 3gnl_A 21 KNERIADIGSDHAYLPCFA----VKNQTAS-FAIAGEVVDGPFQSAQKQV 65 (244)
T ss_dssp SSEEEEEETCSTTHHHHHH----HHTTSEE-EEEEEESSHHHHHHHHHHH
T ss_pred CCCEEEEECCccHHHHHHH----HHhCCCC-EEEEEECCHHHHHHHHHHH
Confidence 3468999999999999887 4455322 2479999999999999884
No 231
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=76.18 E-value=2 Score=42.97 Aligned_cols=46 Identities=22% Similarity=0.124 Sum_probs=35.8
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPE 311 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~ 311 (782)
+..++||+.||.|.++.-| ...|.. .+.++|+++.+++..+.+.+.
T Consensus 79 ~~~~vLDiGcG~G~~~~~l----~~~~~~--~v~~vD~s~~~~~~a~~~~~~ 124 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRL----LLPLFR--EVDMVDITEDFLVQAKTYLGE 124 (241)
T ss_dssp CCSEEEEETCTTTHHHHHT----TTTTCS--EEEEEESCHHHHHHHHHHTGG
T ss_pred CCCEEEEECCCCCHHHHHH----HHhcCC--EEEEEeCCHHHHHHHHHHhhh
Confidence 4579999999999988766 334432 235999999999999988765
No 232
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=76.08 E-value=2.9 Score=42.41 Aligned_cols=45 Identities=20% Similarity=-0.028 Sum_probs=35.5
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
+..+++|+.||.|-++..+ ...|-.. .++|+|+++.|++.-+.|.
T Consensus 21 ~g~~VlDIGtGsG~l~i~l----a~~~~~~-~V~AvDi~~~al~~A~~N~ 65 (230)
T 3lec_A 21 KGARLLDVGSDHAYLPIFL----LQMGYCD-FAIAGEVVNGPYQSALKNV 65 (230)
T ss_dssp TTEEEEEETCSTTHHHHHH----HHTTCEE-EEEEEESSHHHHHHHHHHH
T ss_pred CCCEEEEECCchHHHHHHH----HHhCCCC-EEEEEECCHHHHHHHHHHH
Confidence 3468999999999999887 4455322 2479999999999999884
No 233
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=76.07 E-value=2.4 Score=43.56 Aligned_cols=56 Identities=18% Similarity=0.233 Sum_probs=41.2
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC------CCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP------ETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p------~~~~~~~d~~~ 321 (782)
+..++||+-||.|+++.-+. +..|.++ .++|+++.+++..+.+.. ...++..|+.+
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~---~~~~~~v---~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 125 (287)
T 1kpg_A 64 PGMTLLDVGCGWGATMMRAV---EKYDVNV---VGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ 125 (287)
T ss_dssp TTCEEEEETCTTSHHHHHHH---HHHCCEE---EEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG
T ss_pred CcCEEEEECCcccHHHHHHH---HHcCCEE---EEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh
Confidence 45689999999999888773 3457765 499999999888877642 44555666544
No 234
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=75.99 E-value=2.1 Score=43.53 Aligned_cols=59 Identities=15% Similarity=0.043 Sum_probs=42.3
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC------CCcccccchHHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP------ETKVRNEAADDFL 323 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p------~~~~~~~d~~~~~ 323 (782)
..++||+.||.|..+.-|...+ ..|.++ .++|+++.+++..+.|.. ...++.+|+.+++
T Consensus 80 ~~~VLeiG~G~G~~~~~la~~~-~~~~~v---~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l 144 (247)
T 1sui_A 80 AKNTMEIGVYTGYSLLATALAI-PEDGKI---LAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVL 144 (247)
T ss_dssp CCEEEEECCGGGHHHHHHHHHS-CTTCEE---EEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHH
T ss_pred cCEEEEeCCCcCHHHHHHHHhC-CCCCEE---EEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHH
Confidence 3489999999999988774211 115554 499999999888887753 3456777877664
No 235
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*
Probab=75.95 E-value=1.1 Score=43.97 Aligned_cols=60 Identities=22% Similarity=0.402 Sum_probs=41.4
Q ss_pred chhHHHHHHHHHhcCCCCCCCCCcceeEEeeccCCCCCCCcccccccc----hhhhhhHHhHhc
Q 003974 374 NEEFEVERLIAVCYGDPNKTKKPGVYFKVRWKGYGPSEDTWEPIKGLS----KCKEKLKEFVTK 433 (782)
Q Consensus 374 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 433 (782)
...|.|+++++-...-..+..+....|-|.|+||...|+||++..+|. .+...|..|...
T Consensus 34 ~~~y~VE~i~d~~~~ld~r~~~~~~eYlVKWkg~s~~h~tWe~~~~L~~~~~~~~~kl~nf~kk 97 (187)
T 2b2y_A 34 TTIYAVEADGDPNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKK 97 (187)
T ss_dssp SSHHHHHHHCCTTTTCC-CCSCCEEEEEEEETTSCGGGCEEECHHHHHHTTCBCHHHHHHHHHH
T ss_pred ceeEEeeccCCcccccCccccCCcEEEEEEECCCCcccCeeCCHHHhCccchhhHHHHHHHHHh
Confidence 456777776422111123455678899999999999999999999985 344567777654
No 236
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=75.67 E-value=2.4 Score=43.22 Aligned_cols=58 Identities=21% Similarity=0.249 Sum_probs=41.4
Q ss_pred CCCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC-----CCCcccccchHH
Q 003974 259 QPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADD 321 (782)
Q Consensus 259 ~~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~-----p~~~~~~~d~~~ 321 (782)
.+..++||+.||.|.++.-|.. ...|.++ .++|+++.+++..+.+. ++..++..|+.+
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~--~~~~~~v---~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~ 98 (276)
T 3mgg_A 36 PPGAKVLEAGCGIGAQTVILAK--NNPDAEI---TSIDISPESLEKARENTEKNGIKNVKFLQANIFS 98 (276)
T ss_dssp CTTCEEEETTCTTSHHHHHHHH--HCTTSEE---EEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGG
T ss_pred CCCCeEEEecCCCCHHHHHHHH--hCCCCEE---EEEECCHHHHHHHHHHHHHcCCCCcEEEEccccc
Confidence 3557999999999999987731 1125554 49999999988887764 455566666654
No 237
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=75.67 E-value=3.5 Score=42.85 Aligned_cols=56 Identities=21% Similarity=0.270 Sum_probs=42.1
Q ss_pred cceeccccccchhHHHHHHhhhhcC-CceeeEEEEecCHHHHHHHHHhCC---------CCcccccchHHHH
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSG-VKLVTRWAIDINPHACKSLKFNHP---------ETKVRNEAADDFL 323 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG-~~~~~~~ave~~~~a~~t~~~N~p---------~~~~~~~d~~~~~ 323 (782)
.++|||-||.|+++.-+. +..+ .++ .+||+|+.+++..+.|++ ...++.+|+.+++
T Consensus 80 ~~VLdiG~G~G~~~~~l~---~~~~~~~v---~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l 145 (283)
T 2i7c_A 80 KNVLVVGGGDGGIIRELC---KYKSVENI---DICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFL 145 (283)
T ss_dssp CEEEEEECTTSHHHHHHT---TCTTCCEE---EEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHH
T ss_pred CeEEEEeCCcCHHHHHHH---HcCCCCEE---EEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHH
Confidence 589999999999887762 2322 343 499999999999998875 3457777877653
No 238
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=75.53 E-value=2 Score=43.06 Aligned_cols=56 Identities=16% Similarity=0.049 Sum_probs=40.8
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC---CCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP---ETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p---~~~~~~~d~~~ 321 (782)
...++||+-||.|.++..| ...|.. .+.++|+++.+++..+.+.. ...++..|+.+
T Consensus 93 ~~~~vLDiG~G~G~~~~~l----~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~ 151 (254)
T 1xtp_A 93 GTSRALDCGAGIGRITKNL----LTKLYA--TTDLLEPVKHMLEEAKRELAGMPVGKFILASMET 151 (254)
T ss_dssp CCSEEEEETCTTTHHHHHT----HHHHCS--EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGG
T ss_pred CCCEEEEECCCcCHHHHHH----HHhhcC--EEEEEeCCHHHHHHHHHHhccCCceEEEEccHHH
Confidence 4579999999999988877 334433 23599999999999998874 34455555544
No 239
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=75.47 E-value=1.6 Score=47.52 Aligned_cols=56 Identities=14% Similarity=0.235 Sum_probs=38.3
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC------CCCcccccchHHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH------PETKVRNEAADDF 322 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~------p~~~~~~~d~~~~ 322 (782)
+..++|||.||.|.++.-+ ..+|..- +.|||++ .+++..+.|. ....++.+|++++
T Consensus 63 ~~~~VLDlGcGtG~ls~~l----a~~g~~~--V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 124 (376)
T 3r0q_C 63 EGKTVLDVGTGSGILAIWS----AQAGARK--VYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDI 124 (376)
T ss_dssp TTCEEEEESCTTTHHHHHH----HHTTCSE--EEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGC
T ss_pred CCCEEEEeccCcCHHHHHH----HhcCCCE--EEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhc
Confidence 4468999999999998877 4567732 2599999 6555555443 1246667777654
No 240
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=75.20 E-value=2 Score=44.90 Aligned_cols=56 Identities=18% Similarity=0.249 Sum_probs=40.3
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC------CCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP------ETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p------~~~~~~~d~~~ 321 (782)
+..++||+-||.|+++.-+. +..|.+++ ++|+++.+++..+.+.. ...++..|+.+
T Consensus 90 ~~~~vLDiGcG~G~~~~~la---~~~~~~v~---gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 151 (318)
T 2fk8_A 90 PGMTLLDIGCGWGTTMRRAV---ERFDVNVI---GLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED 151 (318)
T ss_dssp TTCEEEEESCTTSHHHHHHH---HHHCCEEE---EEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG
T ss_pred CcCEEEEEcccchHHHHHHH---HHCCCEEE---EEECCHHHHHHHHHHHHhcCCCCceEEEECChHH
Confidence 45689999999999887773 23377654 99999999888887743 24455555543
No 241
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=74.89 E-value=1.6 Score=46.65 Aligned_cols=54 Identities=15% Similarity=0.118 Sum_probs=37.1
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC------CCCcccccchHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH------PETKVRNEAADD 321 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~------p~~~~~~~d~~~ 321 (782)
..++||+-||.|.++.-+ ..+|.. .+.|||+++ +++..+.|. +...++..|+.+
T Consensus 65 ~~~VLDiGcGtG~ls~~l----a~~g~~--~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~ 124 (340)
T 2fyt_A 65 DKVVLDVGCGTGILSMFA----AKAGAK--KVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEE 124 (340)
T ss_dssp TCEEEEETCTTSHHHHHH----HHTTCS--EEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred CCEEEEeeccCcHHHHHH----HHcCCC--EEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHH
Confidence 458999999999988766 455753 235999996 666555543 445566666554
No 242
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=74.65 E-value=2.5 Score=44.59 Aligned_cols=58 Identities=12% Similarity=0.064 Sum_probs=39.3
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC-----CCCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~-----p~~~~~~~d~~~ 321 (782)
+..++||+.||.|.++.-+. +. |..-..+.++|+++.+++..+.|. ++..++..|+.+
T Consensus 75 ~~~~VLDiGcG~G~~~~~la---~~-~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~ 137 (317)
T 1dl5_A 75 KGMRVLEIGGGTGYNAAVMS---RV-VGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYY 137 (317)
T ss_dssp TTCEEEEECCTTSHHHHHHH---HH-HCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG
T ss_pred CcCEEEEecCCchHHHHHHH---Hh-cCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhh
Confidence 44699999999999887773 22 222001249999999988888773 345555666544
No 243
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=74.11 E-value=2.6 Score=42.55 Aligned_cols=57 Identities=11% Similarity=0.164 Sum_probs=39.4
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHh-----------CCCCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFN-----------HPETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N-----------~p~~~~~~~d~~~ 321 (782)
...++|||-||.|.++..|.. ...+..+ .|||+++.+++..+.| .++..++..|+.+
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~--~~p~~~v---~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~ 113 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSP--LFPDTLI---LGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMK 113 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGG--GSTTSEE---EEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTT
T ss_pred CCCeEEEEccCCcHHHHHHHH--HCCCCeE---EEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHH
Confidence 456899999999999887731 1224444 4999999887755432 3456667777765
No 244
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=74.09 E-value=3.2 Score=41.72 Aligned_cols=59 Identities=14% Similarity=-0.088 Sum_probs=42.3
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC------CCcccccchHHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP------ETKVRNEAADDFL 323 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p------~~~~~~~d~~~~~ 323 (782)
..++||+.||.|+.+.-|.... ..|.++ .++|+++..++..+.|.. ...++.+|+.+++
T Consensus 71 ~~~VLeiG~G~G~~~~~la~~~-~~~~~v---~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l 135 (237)
T 3c3y_A 71 AKKTIEVGVFTGYSLLLTALSI-PDDGKI---TAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLAL 135 (237)
T ss_dssp CCEEEEECCTTSHHHHHHHHHS-CTTCEE---EEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHhC-CCCCEE---EEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH
Confidence 3589999999999988774211 114554 499999999988887753 2456677877654
No 245
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=73.99 E-value=2.5 Score=42.70 Aligned_cols=55 Identities=16% Similarity=0.177 Sum_probs=39.6
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC-----CCCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~-----p~~~~~~~d~~~ 321 (782)
...++||+-||.|.++.-| ...|.++ .++|+++..++..+.+. ++..++..|+.+
T Consensus 37 ~~~~vLDiGcG~G~~~~~l----~~~~~~v---~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~ 96 (260)
T 1vl5_A 37 GNEEVLDVATGGGHVANAF----APFVKKV---VAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ 96 (260)
T ss_dssp SCCEEEEETCTTCHHHHHH----GGGSSEE---EEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-C
T ss_pred CCCEEEEEeCCCCHHHHHH----HHhCCEE---EEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHh
Confidence 4569999999999988877 3445444 59999999888777653 455566666544
No 246
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=73.90 E-value=2.7 Score=42.04 Aligned_cols=56 Identities=11% Similarity=0.025 Sum_probs=40.5
Q ss_pred CcceeccccccchhHHHHHHhhhhc--CCceeeEEEEecCHHHHHHHHHhCC------CCcccccchHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLS--GVKLVTRWAIDINPHACKSLKFNHP------ETKVRNEAADDF 322 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~a--G~~~~~~~ave~~~~a~~t~~~N~p------~~~~~~~d~~~~ 322 (782)
..++||+.||.|.++.-|. +.. +.++ .++|+++.+++..+.|.. ...++..|+.++
T Consensus 61 ~~~VLdiG~G~G~~~~~la---~~~~~~~~v---~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~ 124 (239)
T 2hnk_A 61 AKRIIEIGTFTGYSSLCFA---SALPEDGKI---LCCDVSEEWTNVARKYWKENGLENKIFLKLGSALET 124 (239)
T ss_dssp CSEEEEECCTTCHHHHHHH---HHSCTTCEE---EEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH
T ss_pred cCEEEEEeCCCCHHHHHHH---HhCCCCCEE---EEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHH
Confidence 4589999999999888773 232 4454 499999999888887742 245666776654
No 247
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=73.43 E-value=3.4 Score=40.30 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=39.8
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~ 321 (782)
...++||+-||.|.++.-+. ..|.++ .++|+++.+++..+.+.. .+...|+.+
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~----~~~~~~---~~~D~~~~~~~~~~~~~~--~~~~~d~~~ 84 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIK----ENGTRV---SGIEAFPEAAEQAKEKLD--HVVLGDIET 84 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHH----TTTCEE---EEEESSHHHHHHHHTTSS--EEEESCTTT
T ss_pred CCCcEEEeCCCCCHHHHHHH----hcCCeE---EEEeCCHHHHHHHHHhCC--cEEEcchhh
Confidence 45699999999999888773 347654 499999999998888764 345555543
No 248
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=73.42 E-value=3.7 Score=41.01 Aligned_cols=59 Identities=17% Similarity=0.097 Sum_probs=40.9
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC------CCCcccccchHHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH------PETKVRNEAADDFL 323 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~------p~~~~~~~d~~~~~ 323 (782)
..++||+.||.|..+.-|...+ ..|.++ .++|+++.+++..+.|. +...++.+|+.+++
T Consensus 73 ~~~vLdiG~G~G~~~~~la~~~-~~~~~v---~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l 137 (232)
T 3cbg_A 73 AKQVLEIGVFRGYSALAMALQL-PPDGQI---IACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATL 137 (232)
T ss_dssp CCEEEEECCTTSHHHHHHHTTS-CTTCEE---EEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHH
T ss_pred CCEEEEecCCCCHHHHHHHHhC-CCCCEE---EEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH
Confidence 3489999999999888773211 014444 59999999988887764 23556677776643
No 249
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=72.74 E-value=4.5 Score=42.88 Aligned_cols=56 Identities=16% Similarity=0.104 Sum_probs=41.8
Q ss_pred cceeccccccchhHHHHHHhhhhcC-CceeeEEEEecCHHHHHHHHHhCCC---------CcccccchHHHH
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSG-VKLVTRWAIDINPHACKSLKFNHPE---------TKVRNEAADDFL 323 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG-~~~~~~~ave~~~~a~~t~~~N~p~---------~~~~~~d~~~~~ 323 (782)
.++|||-||.|+++.-+. +..+ .++ .+||+++.+++..+.|++. ..++.+|+.+++
T Consensus 110 ~~VLdIG~G~G~~~~~l~---~~~~~~~v---~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l 175 (314)
T 2b2c_A 110 KRVLIIGGGDGGILREVL---KHESVEKV---TMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFL 175 (314)
T ss_dssp CEEEEESCTTSHHHHHHT---TCTTCCEE---EEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHH
T ss_pred CEEEEEcCCcCHHHHHHH---HcCCCCEE---EEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHH
Confidence 489999999999887762 2222 343 5999999999999988753 456777776653
No 250
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=72.72 E-value=3.5 Score=40.56 Aligned_cols=44 Identities=23% Similarity=0.231 Sum_probs=34.1
Q ss_pred CCcceeccccccchhHHHHHHhhhhcC--CceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSG--VKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG--~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
+..++||+.||.|+++.-|. +..| .++ .++|+++.+++..+.|.
T Consensus 77 ~~~~vLDiG~G~G~~~~~la---~~~~~~~~v---~~vD~s~~~~~~a~~~~ 122 (226)
T 1i1n_A 77 EGAKALDVGSGSGILTACFA---RMVGCTGKV---IGIDHIKELVDDSVNNV 122 (226)
T ss_dssp TTCEEEEETCTTSHHHHHHH---HHHCTTCEE---EEEESCHHHHHHHHHHH
T ss_pred CCCEEEEEcCCcCHHHHHHH---HHhCCCcEE---EEEeCCHHHHHHHHHHH
Confidence 45699999999999998774 3334 343 59999999998887764
No 251
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=72.52 E-value=3.3 Score=43.72 Aligned_cols=57 Identities=11% Similarity=0.089 Sum_probs=40.6
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC-----CCCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~-----p~~~~~~~d~~~ 321 (782)
+..+|||+=||.|+++.-+ + |+..|.+|+ +||+++.+++.-+.|. .+..+..+|+.+
T Consensus 122 ~g~rVLDIGcG~G~~ta~~-l-A~~~ga~V~---gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~ 183 (298)
T 3fpf_A 122 RGERAVFIGGGPLPLTGIL-L-SHVYGMRVN---VVEIEPDIAELSRKVIEGLGVDGVNVITGDETV 183 (298)
T ss_dssp TTCEEEEECCCSSCHHHHH-H-HHTTCCEEE---EEESSHHHHHHHHHHHHHHTCCSEEEEESCGGG
T ss_pred CcCEEEEECCCccHHHHHH-H-HHccCCEEE---EEECCHHHHHHHHHHHHhcCCCCeEEEECchhh
Confidence 4569999999999877433 2 355687764 9999999998888764 234555666544
No 252
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=72.52 E-value=2.4 Score=44.22 Aligned_cols=58 Identities=19% Similarity=0.177 Sum_probs=40.8
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCC------CcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPE------TKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~------~~~~~~d~~~ 321 (782)
+..++||+.||.|.++.-|.. +...|.++ .++|+++.+++..+.|... ..++..|+.+
T Consensus 118 ~~~~vLDiGcG~G~~~~~la~-~~~~~~~v---~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (305)
T 3ocj_A 118 PGCVVASVPCGWMSELLALDY-SACPGVQL---VGIDYDPEALDGATRLAAGHALAGQITLHRQDAWK 181 (305)
T ss_dssp TTCEEEETTCTTCHHHHTSCC-TTCTTCEE---EEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGG
T ss_pred CCCEEEEecCCCCHHHHHHHH-hcCCCCeE---EEEECCHHHHHHHHHHHHhcCCCCceEEEECchhc
Confidence 346899999999988876510 12335554 4999999999999998764 3445556544
No 253
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=72.05 E-value=3.2 Score=40.04 Aligned_cols=56 Identities=14% Similarity=0.135 Sum_probs=38.7
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHh----CCCCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFN----HPETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N----~p~~~~~~~d~~~ 321 (782)
...++||+-||.|.++..+. ...|.++ .++|+++.+++..+.+ .++..++..|+.+
T Consensus 23 ~~~~vLDiGcG~G~~~~~~~---~~~~~~v---~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~ 82 (209)
T 2p8j_A 23 LDKTVLDCGAGGDLPPLSIF---VEDGYKT---YGIEISDLQLKKAENFSRENNFKLNISKGDIRK 82 (209)
T ss_dssp SCSEEEEESCCSSSCTHHHH---HHTTCEE---EEEECCHHHHHHHHHHHHHHTCCCCEEECCTTS
T ss_pred CCCEEEEECCCCCHHHHHHH---HhCCCEE---EEEECCHHHHHHHHHHHHhcCCceEEEECchhh
Confidence 34689999999888754442 4567765 4999999998877765 3455556656543
No 254
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=71.55 E-value=1.1 Score=45.39 Aligned_cols=59 Identities=20% Similarity=0.135 Sum_probs=40.9
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC------CCCcccccchHHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH------PETKVRNEAADDFL 323 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~------p~~~~~~~d~~~~~ 323 (782)
..++||+.||.|..+.-|...+. .|.++ .+||+++.+++..+.|. +...++.+|+.+++
T Consensus 61 ~~~VLDiG~G~G~~t~~la~~~~-~~~~v---~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l 125 (242)
T 3r3h_A 61 AKKVLELGTFTGYSALAMSLALP-DDGQV---ITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTL 125 (242)
T ss_dssp CSEEEEEESCCSHHHHHHHHTSC-TTCEE---EEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHH
T ss_pred cCEEEEeeCCcCHHHHHHHHhCC-CCCEE---EEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH
Confidence 35899999999999988742211 24554 49999997665555443 25677888887764
No 255
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=71.23 E-value=2.9 Score=43.08 Aligned_cols=56 Identities=21% Similarity=0.189 Sum_probs=39.9
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC------CCCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH------PETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~------p~~~~~~~d~~~ 321 (782)
+..++||+-||.|.++.-|. +..|.++ .++|+++.+++..+.+. +...++..|+.+
T Consensus 82 ~~~~vLDiGcG~G~~~~~l~---~~~~~~v---~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 143 (297)
T 2o57_A 82 RQAKGLDLGAGYGGAARFLV---RKFGVSI---DCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE 143 (297)
T ss_dssp TTCEEEEETCTTSHHHHHHH---HHHCCEE---EEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTS
T ss_pred CCCEEEEeCCCCCHHHHHHH---HHhCCEE---EEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCccc
Confidence 45699999999999988773 3337665 49999999988777654 234555555443
No 256
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=70.69 E-value=2.7 Score=45.05 Aligned_cols=54 Identities=13% Similarity=0.155 Sum_probs=35.9
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHh----C-CC-CcccccchHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFN----H-PE-TKVRNEAADD 321 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N----~-p~-~~~~~~d~~~ 321 (782)
..++||+.||.|.++.-+ ..+|..- +.|||+++ +++..+.| . ++ ..++.+|+++
T Consensus 67 ~~~VLDvGcG~G~~~~~l----a~~g~~~--v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~ 126 (349)
T 3q7e_A 67 DKVVLDVGSGTGILCMFA----AKAGARK--VIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEE 126 (349)
T ss_dssp TCEEEEESCTTSHHHHHH----HHTTCSE--EEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred CCEEEEEeccchHHHHHH----HHCCCCE--EEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHH
Confidence 358999999999988877 4557632 25999995 54444443 2 22 4566666654
No 257
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=70.52 E-value=2.5 Score=43.62 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=40.1
Q ss_pred CCcceeccccccchhHHHHHHhhhhc--CCceeeEEEEecCHHHHHHHHHhCC----CCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLS--GVKLVTRWAIDINPHACKSLKFNHP----ETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~a--G~~~~~~~ave~~~~a~~t~~~N~p----~~~~~~~d~~~ 321 (782)
+..++||+-||.|.++.-|. ... |.++ .++|+++.+.+..+.+.. +..+...|+.+
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~---~~~~~~~~v---~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 83 (284)
T 3gu3_A 22 KPVHIVDYGCGYGYLGLVLM---PLLPEGSKY---TGIDSGETLLAEARELFRLLPYDSEFLEGDATE 83 (284)
T ss_dssp SCCEEEEETCTTTHHHHHHT---TTSCTTCEE---EEEESCHHHHHHHHHHHHSSSSEEEEEESCTTT
T ss_pred CCCeEEEecCCCCHHHHHHH---HhCCCCCEE---EEEECCHHHHHHHHHHHHhcCCceEEEEcchhh
Confidence 45699999999999988773 221 4554 499999999988887753 34455556544
No 258
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=70.28 E-value=2.6 Score=41.71 Aligned_cols=44 Identities=20% Similarity=0.313 Sum_probs=33.3
Q ss_pred CCcceeccccccchhHHHHHHhhhhcC-------CceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSG-------VKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG-------~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
+..++||+.||.|.++.-|. +..| .++ .++|+++.+++..+.|.
T Consensus 84 ~~~~VLdiG~G~G~~~~~la---~~~~~~~~~~~~~v---~~vD~~~~~~~~a~~~~ 134 (227)
T 1r18_A 84 PGARILDVGSGSGYLTACFY---RYIKAKGVDADTRI---VGIEHQAELVRRSKANL 134 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHH---HHHHHSCCCTTCEE---EEEESCHHHHHHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHH---HhcccccCCccCEE---EEEEcCHHHHHHHHHHH
Confidence 44699999999999988774 3233 243 59999999988877763
No 259
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=69.98 E-value=1.8 Score=44.01 Aligned_cols=54 Identities=15% Similarity=0.163 Sum_probs=40.3
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~ 321 (782)
...++||+-||.|.++.-| ...|.+++ ++|+++..++..+.+. +..++..|+++
T Consensus 34 ~~~~vLDiGcG~G~~~~~l----~~~~~~v~---gvD~s~~~~~~a~~~~-~~~~~~~d~~~ 87 (261)
T 3ege_A 34 KGSVIADIGAGTGGYSVAL----ANQGLFVY---AVEPSIVMRQQAVVHP-QVEWFTGYAEN 87 (261)
T ss_dssp TTCEEEEETCTTSHHHHHH----HTTTCEEE---EECSCHHHHHSSCCCT-TEEEECCCTTS
T ss_pred CCCEEEEEcCcccHHHHHH----HhCCCEEE---EEeCCHHHHHHHHhcc-CCEEEECchhh
Confidence 4569999999999999887 45777654 9999998877655544 55666666644
No 260
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=69.19 E-value=4.5 Score=39.34 Aligned_cols=54 Identities=19% Similarity=0.274 Sum_probs=38.1
Q ss_pred CCcceeccccccchhHHHHHHhhhhcC--CceeeEEEEecCHHHHHHHHHhC-----CCCcccccch
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSG--VKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAA 319 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG--~~~~~~~ave~~~~a~~t~~~N~-----p~~~~~~~d~ 319 (782)
+..++||+.||.|.++.-|. +..| .++ .++|+++.+++..+.|. ++..+...|+
T Consensus 77 ~~~~vLdiG~G~G~~~~~l~---~~~~~~~~v---~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~ 137 (215)
T 2yxe_A 77 PGMKVLEIGTGCGYHAAVTA---EIVGEDGLV---VSIERIPELAEKAERTLRKLGYDNVIVIVGDG 137 (215)
T ss_dssp TTCEEEEECCTTSHHHHHHH---HHHCTTSEE---EEEESCHHHHHHHHHHHHHHTCTTEEEEESCG
T ss_pred CCCEEEEECCCccHHHHHHH---HHhCCCCEE---EEEeCCHHHHHHHHHHHHHcCCCCeEEEECCc
Confidence 44699999999999888774 3333 444 59999999988887764 3344445444
No 261
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=68.66 E-value=5.9 Score=40.11 Aligned_cols=58 Identities=17% Similarity=0.228 Sum_probs=36.5
Q ss_pred CCCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHH---HhCCCCcccccchH
Q 003974 259 QPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLK---FNHPETKVRNEAAD 320 (782)
Q Consensus 259 ~~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~---~N~p~~~~~~~d~~ 320 (782)
++..++|||.||.|+.+.-+..-....| . ++|+|+++.....+. ...++...+.+|+.
T Consensus 75 ~~g~~VLDlG~GtG~~t~~la~~v~~~G-~---V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~ 135 (232)
T 3id6_C 75 RKGTKVLYLGAASGTTISHVSDIIELNG-K---AYGVEFSPRVVRELLLVAQRRPNIFPLLADAR 135 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHTTTS-E---EEEEECCHHHHHHHHHHHHHCTTEEEEECCTT
T ss_pred CCCCEEEEEeecCCHHHHHHHHHhCCCC-E---EEEEECcHHHHHHHHHHhhhcCCeEEEEcccc
Confidence 3457999999999998887742111123 3 369999998753331 12355555566654
No 262
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=68.58 E-value=1.7 Score=42.37 Aligned_cols=38 Identities=26% Similarity=0.565 Sum_probs=32.7
Q ss_pred CCCcceeEEeeccCCCCCCCcccccccch-hhhhhHHhH
Q 003974 394 KKPGVYFKVRWKGYGPSEDTWEPIKGLSK-CKEKLKEFV 431 (782)
Q Consensus 394 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (782)
....+.+-|.|+|+..++.||++.+.+.. |++.|.+|.
T Consensus 137 ~~~~~~YLVKWkgl~y~e~TWE~~~~~~~~~~~~I~~y~ 175 (177)
T 2h1e_A 137 GTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKHFQ 175 (177)
T ss_dssp SCEEEEEEEEETTSCSTTCEEEEHHHHHHHCHHHHHHHT
T ss_pred CCCcEEEEEEeCCCCcccccccChHHhhhhHHHHHHHHH
Confidence 35678899999999999999999999874 888888873
No 263
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=68.41 E-value=1.5 Score=45.05 Aligned_cols=52 Identities=25% Similarity=0.255 Sum_probs=40.2
Q ss_pred cceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchHH
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADD 321 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~ 321 (782)
-++|||=||.|.++..| ...|.+|+ |||+++..++..+ .+|+..+...|+++
T Consensus 41 ~~vLDvGcGtG~~~~~l----~~~~~~v~---gvD~s~~ml~~a~-~~~~v~~~~~~~e~ 92 (257)
T 4hg2_A 41 GDALDCGCGSGQASLGL----AEFFERVH---AVDPGEAQIRQAL-RHPRVTYAVAPAED 92 (257)
T ss_dssp SEEEEESCTTTTTHHHH----HTTCSEEE---EEESCHHHHHTCC-CCTTEEEEECCTTC
T ss_pred CCEEEEcCCCCHHHHHH----HHhCCEEE---EEeCcHHhhhhhh-hcCCceeehhhhhh
Confidence 37999999999999888 56677754 9999998877554 46777777766654
No 264
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=68.19 E-value=4.3 Score=42.15 Aligned_cols=46 Identities=17% Similarity=0.264 Sum_probs=34.6
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPE 311 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~ 311 (782)
..++||+-||.|.++.-|.. ...+.++ .+||+++.+++..+.|...
T Consensus 47 ~~~VLDiGCG~G~~~~~la~--~~~~~~v---~gvDis~~~i~~A~~~~~~ 92 (292)
T 3g07_A 47 GRDVLDLGCNVGHLTLSIAC--KWGPSRM---VGLDIDSRLIHSARQNIRH 92 (292)
T ss_dssp TSEEEEESCTTCHHHHHHHH--HTCCSEE---EEEESCHHHHHHHHHTC--
T ss_pred CCcEEEeCCCCCHHHHHHHH--HcCCCEE---EEECCCHHHHHHHHHHHHh
Confidence 46899999999998887731 2224554 5999999999999988654
No 265
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*
Probab=67.53 E-value=1.8 Score=42.54 Aligned_cols=39 Identities=23% Similarity=0.403 Sum_probs=33.6
Q ss_pred CCcceeEEeeccCCCCCCCcccccccc-hhhhhhHHhHhc
Q 003974 395 KPGVYFKVRWKGYGPSEDTWEPIKGLS-KCKEKLKEFVTK 433 (782)
Q Consensus 395 ~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 433 (782)
.+.+.+.|.|+|+..++.||++.+.+. +|++.|.+|...
T Consensus 146 ~g~~~yLVKWkgl~Y~e~TWE~~~~i~~~~~~~I~~f~~R 185 (187)
T 2b2y_A 146 AGYPDYYCKWQGLPYSECSWEDGALISKKFQACIDEYFSR 185 (187)
T ss_dssp TSCEEEEEEETTSCGGGCEEECHHHHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEEECCCChhhCcccchhhhhhhHHHHHHHHHhh
Confidence 457889999999999999999999886 688999988643
No 266
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=67.53 E-value=2.8 Score=43.75 Aligned_cols=44 Identities=23% Similarity=0.118 Sum_probs=32.9
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
...++||+.||.|+++.-|. +..+.++ .++|+++.+++..+.+.
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~---~~~~~~v---~gvD~s~~~l~~a~~~~ 77 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWK---KGRINKL---VCTDIADVSVKQCQQRY 77 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHH---HTTCSEE---EEEESCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCcHHHHHHH---hcCCCEE---EEEeCCHHHHHHHHHHH
Confidence 44689999999999988773 2223343 59999999988877764
No 267
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=66.49 E-value=2.3 Score=43.02 Aligned_cols=47 Identities=19% Similarity=0.232 Sum_probs=35.4
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPET 312 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~ 312 (782)
...++|||-||.|+++.-| ...|..- +.|||+++.+++.-+.|.+..
T Consensus 37 ~g~~VLDiGcGtG~~t~~l----a~~g~~~--V~gvDis~~ml~~a~~~~~~~ 83 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVM----LQNGAKL--VYALDVGTNQLAWKIRSDERV 83 (232)
T ss_dssp TTCEEEEETCTTSHHHHHH----HHTTCSE--EEEECSSCCCCCHHHHTCTTE
T ss_pred CCCEEEEEccCCCHHHHHH----HhcCCCE--EEEEcCCHHHHHHHHHhCccc
Confidence 3458999999999998777 4457532 259999999888766776653
No 268
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=66.38 E-value=9.9 Score=39.70 Aligned_cols=59 Identities=19% Similarity=0.182 Sum_probs=44.0
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC--CCCcccccchHHHHHHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH--PETKVRNEAADDFLSLLK 327 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~--p~~~~~~~d~~~~~~~~~ 327 (782)
.-.+||.-||.||-|..|. +. |.+| +|+|.|+.|++..+. . +...++.++-.++-..|+
T Consensus 23 gg~~VD~T~G~GGHS~~il---~~-~g~V---igiD~Dp~Ai~~A~~-L~~~rv~lv~~~f~~l~~~L~ 83 (285)
T 1wg8_A 23 GGVYVDATLGGAGHARGIL---ER-GGRV---IGLDQDPEAVARAKG-LHLPGLTVVQGNFRHLKRHLA 83 (285)
T ss_dssp TCEEEETTCTTSHHHHHHH---HT-TCEE---EEEESCHHHHHHHHH-TCCTTEEEEESCGGGHHHHHH
T ss_pred CCEEEEeCCCCcHHHHHHH---HC-CCEE---EEEeCCHHHHHHHHh-hccCCEEEEECCcchHHHHHH
Confidence 3489999999999999984 33 5554 599999999988776 5 345677778777654443
No 269
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=65.83 E-value=4.5 Score=44.09 Aligned_cols=54 Identities=22% Similarity=0.392 Sum_probs=37.8
Q ss_pred ceeccccccchhHHHHHHhhhhcCCceeeEEEEecCH---HHHHHHHHhCC--CCcccccchHHH
Q 003974 263 SLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINP---HACKSLKFNHP--ETKVRNEAADDF 322 (782)
Q Consensus 263 ~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~---~a~~t~~~N~p--~~~~~~~d~~~~ 322 (782)
+|||+-||.|-+|+= |.++|.+-| +|||.++ .|.+..+.|.- ...++.++++++
T Consensus 86 ~VLDvG~GtGiLs~~----Aa~aGA~~V--~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~ 144 (376)
T 4hc4_A 86 TVLDVGAGTGILSIF----CAQAGARRV--YAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETV 144 (376)
T ss_dssp EEEEETCTTSHHHHH----HHHTTCSEE--EEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTC
T ss_pred EEEEeCCCccHHHHH----HHHhCCCEE--EEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeee
Confidence 799999999988753 368998744 6999985 44555566642 245667776653
No 270
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=65.78 E-value=5.3 Score=42.27 Aligned_cols=43 Identities=23% Similarity=0.231 Sum_probs=33.7
Q ss_pred CcceeccccccchhHHHHHHhhhhcC--CceeeEEEEecCHHHHHHHHHhC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSG--VKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG--~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
..++||+.||.|.++.-|. +..| .++ .++|+++.+++..+.|.
T Consensus 106 g~~VLDiG~G~G~~~~~la---~~~g~~~~v---~~vD~~~~~~~~a~~~~ 150 (336)
T 2b25_A 106 GDTVLEAGSGSGGMSLFLS---KAVGSQGRV---ISFEVRKDHHDLAKKNY 150 (336)
T ss_dssp TCEEEEECCTTSHHHHHHH---HHHCTTCEE---EEEESSHHHHHHHHHHH
T ss_pred CCEEEEeCCCcCHHHHHHH---HHhCCCceE---EEEeCCHHHHHHHHHHH
Confidence 4589999999999998773 2224 343 59999999999888874
No 271
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=65.63 E-value=4.7 Score=40.10 Aligned_cols=44 Identities=20% Similarity=0.333 Sum_probs=34.0
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
+..++||+.||.|.++.-|. +..|.++ .++|+++.+++..+.|.
T Consensus 91 ~~~~vLdiG~G~G~~~~~la---~~~~~~v---~~vD~~~~~~~~a~~~~ 134 (235)
T 1jg1_A 91 PGMNILEVGTGSGWNAALIS---EIVKTDV---YTIERIPELVEFAKRNL 134 (235)
T ss_dssp TTCCEEEECCTTSHHHHHHH---HHHCSCE---EEEESCHHHHHHHHHHH
T ss_pred CCCEEEEEeCCcCHHHHHHH---HHhCCEE---EEEeCCHHHHHHHHHHH
Confidence 44589999999999888774 3333443 59999999998888764
No 272
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=64.68 E-value=4.5 Score=43.13 Aligned_cols=42 Identities=19% Similarity=0.315 Sum_probs=33.3
Q ss_pred CcceeccccccchhHHHHHHhhhhcC--CceeeEEEEecCHHHHHHHHHhC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSG--VKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG--~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
.-++|||.||.|.++.-+. ..| .++ .++|+++.+++..+.|.
T Consensus 197 ~~~VLDlGcG~G~~~~~la----~~~~~~~v---~~vD~s~~~l~~a~~~~ 240 (343)
T 2pjd_A 197 KGKVLDVGCGAGVLSVAFA----RHSPKIRL---TLCDVSAPAVEASRATL 240 (343)
T ss_dssp CSBCCBTTCTTSHHHHHHH----HHCTTCBC---EEEESBHHHHHHHHHHH
T ss_pred CCeEEEecCccCHHHHHHH----HHCCCCEE---EEEECCHHHHHHHHHHH
Confidence 3489999999999988773 334 454 49999999998888775
No 273
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=64.62 E-value=4.6 Score=43.73 Aligned_cols=56 Identities=14% Similarity=0.115 Sum_probs=41.7
Q ss_pred CCcceeccccccchhHHHHHHhhhh--cCCceeeEEEEecCHHHHHHHHHhC-------------CCCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASL--SGVKLVTRWAIDINPHACKSLKFNH-------------PETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~--aG~~~~~~~ave~~~~a~~t~~~N~-------------p~~~~~~~d~~~ 321 (782)
+..++|||-||.|.++.-|. .. .+.++ .++|+++.+++..+.|. ++..++..|+.+
T Consensus 83 ~~~~VLDlGcG~G~~~~~la---~~~~~~~~v---~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~ 153 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLAS---KLVGEHGKV---IGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIEN 153 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHH---HHHTTTCEE---EEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTC
T ss_pred CCCEEEEecCccCHHHHHHH---HHhCCCCEE---EEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHH
Confidence 45689999999999887773 23 34554 49999999999888773 456666666654
No 274
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=64.27 E-value=4.3 Score=43.06 Aligned_cols=54 Identities=19% Similarity=0.180 Sum_probs=35.1
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC------CCCcccccchHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH------PETKVRNEAADD 321 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~------p~~~~~~~d~~~ 321 (782)
..++||+.||.|.++.-+ ..+|..- +.|||+++ +++..+.|. ....++..|+.+
T Consensus 39 ~~~VLDiGcGtG~ls~~l----a~~g~~~--v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~ 98 (328)
T 1g6q_1 39 DKIVLDVGCGTGILSMFA----AKHGAKH--VIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLED 98 (328)
T ss_dssp TCEEEEETCTTSHHHHHH----HHTCCSE--EEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred CCEEEEecCccHHHHHHH----HHCCCCE--EEEEChHH-HHHHHHHHHHHcCCCCCEEEEECchhh
Confidence 348999999999988766 4567632 36999994 555554442 124455555544
No 275
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=64.01 E-value=5.9 Score=42.02 Aligned_cols=46 Identities=15% Similarity=0.360 Sum_probs=36.3
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPET 312 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~ 312 (782)
+.-.|||.|||.|.... .|...|-+++ ++|+++.+++.-+.+.-..
T Consensus 252 ~~~~VlDpF~GsGtt~~----aa~~~gr~~i---g~e~~~~~~~~~~~r~~~~ 297 (323)
T 1boo_A 252 PDDLVVDIFGGSNTTGL----VAERESRKWI---SFEMKPEYVAASAFRFLDN 297 (323)
T ss_dssp TTCEEEETTCTTCHHHH----HHHHTTCEEE---EEESCHHHHHHHHGGGSCS
T ss_pred CCCEEEECCCCCCHHHH----HHHHcCCCEE---EEeCCHHHHHHHHHHHHhc
Confidence 34579999999996443 3478898875 8999999999998887543
No 276
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=63.98 E-value=5.2 Score=45.75 Aligned_cols=47 Identities=15% Similarity=0.197 Sum_probs=34.5
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHh
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFN 308 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N 308 (782)
...+++|.+||.|||-..+..-+...+- ..++++|+++.++...+.|
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~--~~i~G~Eid~~~~~lA~~N 267 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQT--VVYFGQELNTSTYNLARMN 267 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTT--CEEEEEESCHHHHHHHHHH
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccC--ceEEEEECcHHHHHHHHHH
Confidence 4569999999999998776421111221 2458999999999998887
No 277
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=63.32 E-value=6.5 Score=38.73 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=28.9
Q ss_pred CCcceeccccccchhHHHHHHhhhhcC-CceeeEEEEecCHHHHHHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSG-VKLVTRWAIDINPHACKSL 305 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG-~~~~~~~ave~~~~a~~t~ 305 (782)
+..++|||-||.|.++.-|. ...| .+ +.|||+++.+++.+
T Consensus 57 ~g~~VLDlGcGtG~~~~~la---~~~~~~~---V~gvD~s~~~l~~~ 97 (210)
T 1nt2_A 57 GDERVLYLGAASGTTVSHLA---DIVDEGI---IYAVEYSAKPFEKL 97 (210)
T ss_dssp SSCEEEEETCTTSHHHHHHH---HHTTTSE---EEEECCCHHHHHHH
T ss_pred CCCEEEEECCcCCHHHHHHH---HHcCCCE---EEEEECCHHHHHHH
Confidence 34589999999999887663 3343 23 36999999876443
No 278
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=63.26 E-value=7.2 Score=40.85 Aligned_cols=43 Identities=19% Similarity=0.027 Sum_probs=31.9
Q ss_pred CcceeccccccchhHHHHHHhhhhcC-CceeeEEEEecCHHHHHHHHHhCC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSG-VKLVTRWAIDINPHACKSLKFNHP 310 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG-~~~~~~~ave~~~~a~~t~~~N~p 310 (782)
..+||||-||.|+...-+ ...| .++ .++|+++.+++.-+...+
T Consensus 49 ~~~VLDlGCG~G~~l~~~----~~~~~~~v---~GiD~S~~~l~~A~~~~~ 92 (302)
T 2vdw_A 49 KRKVLAIDFGNGADLEKY----FYGEIALL---VATDPDADAIARGNERYN 92 (302)
T ss_dssp CCEEEETTCTTTTTHHHH----HHTTCSEE---EEEESCHHHHHHHHHHHH
T ss_pred CCeEEEEecCCcHhHHHH----HhcCCCeE---EEEECCHHHHHHHHHHHH
Confidence 468999999999866554 2344 444 499999999988877543
No 279
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=63.22 E-value=6.9 Score=43.41 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=31.6
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSL 305 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~ 305 (782)
...+||||.||.|.++..|. +..|.. .+++||+++.+++.-
T Consensus 242 ~g~~VLDLGCGsG~la~~LA---~~~g~~--~V~GVDis~~~l~~A 282 (433)
T 1u2z_A 242 KGDTFMDLGSGVGNCVVQAA---LECGCA--LSFGCEIMDDASDLT 282 (433)
T ss_dssp TTCEEEEESCTTSHHHHHHH---HHHCCS--EEEEEECCHHHHHHH
T ss_pred CCCEEEEeCCCcCHHHHHHH---HHCCCC--EEEEEeCCHHHHHHH
Confidence 45689999999999998774 344643 236999999987766
No 280
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=62.80 E-value=8.1 Score=39.01 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=34.4
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
+..++||+-||.|.++.-|. +..|.+++ ++|+++.+++..+.+.
T Consensus 61 ~~~~vLDiGcG~G~~~~~l~---~~~~~~v~---gvD~s~~~~~~a~~~~ 104 (273)
T 3bus_A 61 SGDRVLDVGCGIGKPAVRLA---TARDVRVT---GISISRPQVNQANARA 104 (273)
T ss_dssp TTCEEEEESCTTSHHHHHHH---HHSCCEEE---EEESCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHH---HhcCCEEE---EEeCCHHHHHHHHHHH
Confidence 45699999999999888773 33476654 9999999988777664
No 281
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=62.21 E-value=4.4 Score=48.58 Aligned_cols=55 Identities=16% Similarity=0.220 Sum_probs=40.8
Q ss_pred CCcceeccccccchhHHHHHHhhhhcC---CceeeEEEEecCHHHHHHHHH-----------hCCCCcccccchHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSG---VKLVTRWAIDINPHACKSLKF-----------NHPETKVRNEAADD 321 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG---~~~~~~~ave~~~~a~~t~~~-----------N~p~~~~~~~d~~~ 321 (782)
...+||||-||.|.++.-| ...| .++ .|||+++.+++..+. +.++..++.+|+.+
T Consensus 721 ~g~rVLDVGCGTG~lai~L----Ar~g~p~a~V---tGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~d 789 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSL----LDYPTSLQTI---IGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILE 789 (950)
T ss_dssp CCSEEEEETCSSSHHHHHH----TSSCCCCCEE---EEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTS
T ss_pred CCCEEEEECCCCCHHHHHH----HHhCCCCCeE---EEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHh
Confidence 4568999999999999887 4455 444 599999999988876 23455566666644
No 282
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=59.36 E-value=6.2 Score=47.15 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=34.1
Q ss_pred CCcceeccccccchhHHHHHHhhhhcC-CceeeEEEEecCHHHHHHH--HHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSG-VKLVTRWAIDINPHACKSL--KFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG-~~~~~~~ave~~~~a~~t~--~~N~ 309 (782)
...+++|.+||.|++...+. +..+ ..-..++|+|+++.|+... +.|.
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA---~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL 370 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVS---AGFNNVMPRQIWANDIETLFLELLSIRLGL 370 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHH---HTSTTCCGGGEEEECSCGGGHHHHHHHHHT
T ss_pred CCCEEEECCCCccHHHHHHH---HHhcccCCCeEEEEECCHHHHHHHHHHHHH
Confidence 45689999999999988763 2332 2122457999999998887 6664
No 283
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=59.00 E-value=4.7 Score=41.86 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=35.1
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
.-++|||=||.|=++..+. ..++- ..+||+|+|+.+++..+.|.
T Consensus 133 p~~VLDLGCG~GpLAl~~~---~~~p~--a~y~a~DId~~~le~a~~~l 176 (281)
T 3lcv_B 133 PNTLRDLACGLNPLAAPWM---GLPAE--TVYIASDIDARLVGFVDEAL 176 (281)
T ss_dssp CSEEEETTCTTGGGCCTTT---TCCTT--CEEEEEESBHHHHHHHHHHH
T ss_pred CceeeeeccCccHHHHHHH---hhCCC--CEEEEEeCCHHHHHHHHHHH
Confidence 5599999999999998772 22232 25699999999999999885
No 284
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=58.09 E-value=4.6 Score=40.51 Aligned_cols=46 Identities=13% Similarity=-0.052 Sum_probs=35.3
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPE 311 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~ 311 (782)
+..++|||-||.|.++.-+ ...|.. .+.++|+++.+++..+.+...
T Consensus 56 ~~~~vLDlGcG~G~~~~~l----~~~~~~--~v~gvD~s~~~l~~a~~~~~~ 101 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLS----ACESFT--EIIVSDYTDQNLWELQKWLKK 101 (265)
T ss_dssp CEEEEEEESCTTCCGGGTT----GGGTEE--EEEEEESCHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCccHHHHHH----hhcccC--eEEEecCCHHHHHHHHHHHhc
Confidence 4468999999999888665 455661 235999999999988887654
No 285
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=57.94 E-value=5.6 Score=37.89 Aligned_cols=35 Identities=20% Similarity=0.149 Sum_probs=26.4
Q ss_pred CCcceeccccccchhHHHHHHhhhhcC----------CceeeEEEEecCHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSG----------VKLVTRWAIDINPH 300 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG----------~~~~~~~ave~~~~ 300 (782)
+..++|||.||.|+++.-|. +..| .++ .|+|+++.
T Consensus 22 ~~~~vLDlGcG~G~~~~~la---~~~~~~~~~~~~~~~~v---~~vD~s~~ 66 (196)
T 2nyu_A 22 PGLRVLDCGAAPGAWSQVAV---QKVNAAGTDPSSPVGFV---LGVDLLHI 66 (196)
T ss_dssp TTCEEEEETCCSCHHHHHHH---HHTTTTCCCTTSCCCEE---EEECSSCC
T ss_pred CCCEEEEeCCCCCHHHHHHH---HHhccccccccCCCceE---EEEechhc
Confidence 34689999999999998874 3434 333 59999984
No 286
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=57.75 E-value=0.68 Score=55.65 Aligned_cols=29 Identities=21% Similarity=0.547 Sum_probs=25.3
Q ss_pred CCcceeEEeeccCCCCCCCcccccccchh
Q 003974 395 KPGVYFKVRWKGYGPSEDTWEPIKGLSKC 423 (782)
Q Consensus 395 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 423 (782)
+..+.|-|.||||...|+||++.++|.++
T Consensus 69 ~~~~eylvKWkg~s~~hntWe~~e~L~~~ 97 (800)
T 3mwy_W 69 KENYEFLIKWTDESHLHNTWETYESIGQV 97 (800)
T ss_dssp HHHCEEEEECSSSCTTSCEEECHHHHCSC
T ss_pred cCceEEEEEeCCcceeeccccCHHHHhhc
Confidence 45678999999999999999999998754
No 287
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=57.45 E-value=4 Score=40.83 Aligned_cols=38 Identities=21% Similarity=0.081 Sum_probs=27.1
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHAC 302 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~ 302 (782)
+.-++||+-||.|.++.-|.. ...|..+ .+||+++.+.
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~--~~~~~~v---~GvD~s~~~m 61 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAI--NDQNTFY---IGIDPVKENL 61 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHH--TCTTEEE---EEECSCCGGG
T ss_pred CCCEEEEEeccCcHHHHHHHH--hCCCCEE---EEEeCCHHHH
Confidence 456899999999998877721 2345554 4999995544
No 288
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=56.74 E-value=13 Score=37.53 Aligned_cols=50 Identities=12% Similarity=0.190 Sum_probs=37.6
Q ss_pred CCCCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCC
Q 003974 258 GQPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPE 311 (782)
Q Consensus 258 ~~~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~ 311 (782)
-++-.++|||.||.|.++.-|. ...|-.- .++|||+++...+-++.+...
T Consensus 75 ikpG~~VldlG~G~G~~~~~la---~~VG~~G-~V~avD~s~~~~~~l~~~a~~ 124 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMS---DIIGPRG-RIYGVEFAPRVMRDLLTVVRD 124 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHH---HHHCTTC-EEEEEECCHHHHHHHHHHSTT
T ss_pred CCCCCEEEEecCcCCHHHHHHH---HHhCCCc-eEEEEeCCHHHHHHHHHhhHh
Confidence 3456799999999999988774 4444332 237999999999888877643
No 289
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=55.95 E-value=2.3 Score=42.91 Aligned_cols=57 Identities=9% Similarity=0.021 Sum_probs=36.7
Q ss_pred CcceeccccccchhHHHHHHhhh--hcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGAS--LSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAAD 320 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~--~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~ 320 (782)
..++||+-||.|+.+.-|...+. ..+.+| .+||+++.+++..+...++..++.+|+.
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V---~gvD~s~~~l~~a~~~~~~v~~~~gD~~ 140 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQV---IGIDRDLSRCQIPASDMENITLHQGDCS 140 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEE---EEEESCCTTCCCCGGGCTTEEEEECCSS
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEE---EEEeCChHHHHHHhccCCceEEEECcch
Confidence 35899999999999987742111 124454 5999999876544422345556666553
No 290
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=55.65 E-value=12 Score=33.92 Aligned_cols=51 Identities=20% Similarity=0.184 Sum_probs=39.9
Q ss_pred ccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchHH
Q 003974 266 DLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADD 321 (782)
Q Consensus 266 dlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~ 321 (782)
-+.+|+|-+...+...+...|++++ ++|.|+..++.++. .+..++.+|+.+
T Consensus 10 viIiG~G~~G~~la~~L~~~g~~v~---vid~~~~~~~~~~~--~g~~~i~gd~~~ 60 (140)
T 3fwz_A 10 ALLVGYGRVGSLLGEKLLASDIPLV---VIETSRTRVDELRE--RGVRAVLGNAAN 60 (140)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEE---EEESCHHHHHHHHH--TTCEEEESCTTS
T ss_pred EEEECcCHHHHHHHHHHHHCCCCEE---EEECCHHHHHHHHH--cCCCEEECCCCC
Confidence 3577999888888877788999875 89999999998876 355666666654
No 291
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=54.52 E-value=12 Score=40.34 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=43.5
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHh--CCCCcccccchHHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFN--HPETKVRNEAADDF 322 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N--~p~~~~~~~d~~~~ 322 (782)
...||++..|.|+++..|.. +..+-++ .|||+|+.-+..++.. +++..++++|+-++
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~--~~~~~~v---vavE~D~~l~~~L~~~~~~~~l~ii~~D~l~~ 117 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYN--KYCPRQY---SLLEKRSSLYKFLNAKFEGSPLQILKRDPYDW 117 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHH--HHCCSEE---EEECCCHHHHHHHHHHTTTSSCEEECSCTTCH
T ss_pred CCEEEEECCCCCHHHHHHHh--hCCCCEE---EEEecCHHHHHHHHHhccCCCEEEEECCccch
Confidence 46899999999999999942 1123454 4999999999888864 46678899998443
No 292
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=52.21 E-value=14 Score=43.44 Aligned_cols=50 Identities=20% Similarity=0.279 Sum_probs=34.0
Q ss_pred CCcceeccccccchhHHHHHHhhhh--cCCc-----------------------------------eeeEEEEecCHHHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASL--SGVK-----------------------------------LVTRWAIDINPHAC 302 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~--aG~~-----------------------------------~~~~~ave~~~~a~ 302 (782)
...+++|+|||.|++.....+-+.. .|+. -..++++|+|+.|+
T Consensus 190 ~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av 269 (703)
T 3v97_A 190 PGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVI 269 (703)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHH
T ss_pred CCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHH
Confidence 3468999999999988765432100 0110 01357999999999
Q ss_pred HHHHHhC
Q 003974 303 KSLKFNH 309 (782)
Q Consensus 303 ~t~~~N~ 309 (782)
+.-+.|-
T Consensus 270 ~~A~~N~ 276 (703)
T 3v97_A 270 QRARTNA 276 (703)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999884
No 293
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=51.93 E-value=7.1 Score=40.11 Aligned_cols=43 Identities=9% Similarity=-0.060 Sum_probs=33.0
Q ss_pred cceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCC
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPE 311 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~ 311 (782)
.++||+-||.|+++.-+. +. |-+ +.+||+|+..++..+.+++.
T Consensus 74 ~~VL~iG~G~G~~~~~ll---~~-~~~---v~~veid~~~i~~ar~~~~~ 116 (262)
T 2cmg_A 74 KEVLIVDGFDLELAHQLF---KY-DTH---IDFVQADEKILDSFISFFPH 116 (262)
T ss_dssp CEEEEESSCCHHHHHHHT---TS-SCE---EEEECSCHHHHGGGTTTSTT
T ss_pred CEEEEEeCCcCHHHHHHH---hC-CCE---EEEEECCHHHHHHHHHHHHh
Confidence 489999999999887662 33 533 35999999999888777653
No 294
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=51.74 E-value=6.7 Score=37.59 Aligned_cols=48 Identities=15% Similarity=0.068 Sum_probs=32.0
Q ss_pred CCcceeccccccchhHHHHHHhhhhc---CCceeeEEEEecCHHHHHHHHHhCCCCcccccch
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLS---GVKLVTRWAIDINPHACKSLKFNHPETKVRNEAA 319 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~a---G~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~ 319 (782)
+..++|||.||.|+++.-+. +.. +.++ .|+|+++.+ ..++..++..|+
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~---~~~~~~~~~v---~gvD~s~~~------~~~~v~~~~~d~ 72 (201)
T 2plw_A 22 KNKIILDIGCYPGSWCQVIL---ERTKNYKNKI---IGIDKKIMD------PIPNVYFIQGEI 72 (201)
T ss_dssp TTEEEEEESCTTCHHHHHHH---HHTTTSCEEE---EEEESSCCC------CCTTCEEEECCT
T ss_pred CCCEEEEeCCCCCHHHHHHH---HHcCCCCceE---EEEeCCccC------CCCCceEEEccc
Confidence 34689999999999998773 333 3443 599999843 234445555554
No 295
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=50.63 E-value=11 Score=40.01 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=32.8
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCH---HHHHHHHHhCCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINP---HACKSLKFNHPE 311 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~---~a~~t~~~N~p~ 311 (782)
+.-.|||.|||.|.... .|...|-+++ ++|+++ ..++.-+.+.-.
T Consensus 242 ~~~~vlDpF~GsGtt~~----aa~~~~r~~i---g~e~~~~~~~~~~~~~~Rl~~ 289 (319)
T 1eg2_A 242 PGSTVLDFFAGSGVTAR----VAIQEGRNSI---CTDAAPVFKEYYQKQLTFLQD 289 (319)
T ss_dssp TTCEEEETTCTTCHHHH----HHHHHTCEEE---EEESSTHHHHHHHHHHHHC--
T ss_pred CCCEEEecCCCCCHHHH----HHHHcCCcEE---EEECCccHHHHHHHHHHHHHH
Confidence 34579999999996443 3467788865 899999 888877776543
No 296
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=50.20 E-value=12 Score=36.60 Aligned_cols=48 Identities=13% Similarity=0.146 Sum_probs=36.4
Q ss_pred CcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchHH
Q 003974 261 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADD 321 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~ 321 (782)
..++||+-||.|.++.-|. .. .++|+++.+++..+.+ +..++..|+.+
T Consensus 48 ~~~vLDiG~G~G~~~~~l~----~~-------~~vD~s~~~~~~a~~~--~~~~~~~d~~~ 95 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLK----IK-------IGVEPSERMAEIARKR--GVFVLKGTAEN 95 (219)
T ss_dssp SSCEEEETCTTSTTHHHHT----CC-------EEEESCHHHHHHHHHT--TCEEEECBTTB
T ss_pred CCcEEEeCCCCCHHHHHHH----HH-------hccCCCHHHHHHHHhc--CCEEEEccccc
Confidence 4589999999999887662 22 4899999999999887 45555555543
No 297
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=49.67 E-value=8.4 Score=44.03 Aligned_cols=46 Identities=15% Similarity=0.126 Sum_probs=32.5
Q ss_pred ceeccccccchhHHHHHHhhhh----cC-------CceeeEEEEecCHHHHHHHHHhC
Q 003974 263 SLLDLYSGCGAMSTGLCIGASL----SG-------VKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 263 ~~ldlf~G~Gg~s~Gl~~g~~~----aG-------~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
+|+|.+||.|||-+.+..-+.. .+ .. ..++++|+++.++..-+.|.
T Consensus 247 ~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~-~~i~G~Eid~~~~~lA~~Nl 303 (544)
T 3khk_A 247 RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQ-ISVYGQESNPTTWKLAAMNM 303 (544)
T ss_dssp EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGG-EEEEECCCCHHHHHHHHHHH
T ss_pred eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhh-ceEEEEeCCHHHHHHHHHHH
Confidence 8999999999987765321111 11 02 24589999999999888873
No 298
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=49.45 E-value=8.6 Score=39.01 Aligned_cols=43 Identities=14% Similarity=-0.009 Sum_probs=32.6
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHh
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFN 308 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N 308 (782)
...++|||=||.|.++.-+ ...|+.- +.|+|+++.+++..+.+
T Consensus 55 ~g~~vLDiGCG~G~~~~~~----~~~~~~~--v~g~D~s~~~l~~a~~~ 97 (263)
T 2a14_A 55 QGDTLIDIGSGPTIYQVLA----ACDSFQD--ITLSDFTDRNREELEKW 97 (263)
T ss_dssp CEEEEEESSCTTCCGGGTT----GGGTEEE--EEEEESCHHHHHHHHHH
T ss_pred CCceEEEeCCCccHHHHHH----HHhhhcc--eeeccccHHHHHHHHHH
Confidence 4568999999998766533 4567652 35999999999988775
No 299
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=48.62 E-value=4.7 Score=39.18 Aligned_cols=37 Identities=16% Similarity=0.512 Sum_probs=31.0
Q ss_pred cceeEEeeccCCCCCCCcccccccchhhhh--hHHhHhc
Q 003974 397 GVYFKVRWKGYGPSEDTWEPIKGLSKCKEK--LKEFVTK 433 (782)
Q Consensus 397 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 433 (782)
...|-|.|+|+..-|+||++.+.|..|+.. |..|...
T Consensus 46 ~~EYlVKWKg~Sy~HnTWe~ee~L~~~~glkKl~nf~kk 84 (177)
T 2h1e_A 46 NYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQ 84 (177)
T ss_dssp HEEEEEEETTSCGGGCEEECHHHHCSCTTHHHHHHHHHH
T ss_pred ceEEEEEECCCccccCeecCHHHHhhchHHHHHHHHHHH
Confidence 467899999999999999999999877665 6677654
No 300
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=45.45 E-value=21 Score=32.04 Aligned_cols=50 Identities=20% Similarity=0.220 Sum_probs=37.7
Q ss_pred cccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchHH
Q 003974 267 LYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADD 321 (782)
Q Consensus 267 lf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~ 321 (782)
+.+|+|.+...+...+...|++++ ++|.++..++.++.. ...++..|+.+
T Consensus 10 ~I~G~G~iG~~la~~L~~~g~~V~---~id~~~~~~~~~~~~--~~~~~~gd~~~ 59 (141)
T 3llv_A 10 IVIGSEAAGVGLVRELTAAGKKVL---AVDKSKEKIELLEDE--GFDAVIADPTD 59 (141)
T ss_dssp EEECCSHHHHHHHHHHHHTTCCEE---EEESCHHHHHHHHHT--TCEEEECCTTC
T ss_pred EEECCCHHHHHHHHHHHHCCCeEE---EEECCHHHHHHHHHC--CCcEEECCCCC
Confidence 456889888888877888999875 799999998888763 34555556544
No 301
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=43.57 E-value=12 Score=34.31 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=26.4
Q ss_pred CCcceeccccccchhHHHHHHhhhh--cCCceeeEEEEecCHHHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASL--SGVKLVTRWAIDINPHAC 302 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~--aG~~~~~~~ave~~~~a~ 302 (782)
+..++||+.||.|+++.-+. +. .+.++ .++|+++ ..
T Consensus 22 ~~~~vLd~G~G~G~~~~~l~---~~~~~~~~v---~~~D~~~-~~ 59 (180)
T 1ej0_A 22 PGMTVVDLGAAPGGWSQYVV---TQIGGKGRI---IACDLLP-MD 59 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHH---HHHCTTCEE---EEEESSC-CC
T ss_pred CCCeEEEeCCCCCHHHHHHH---HHhCCCCeE---EEEECcc-cc
Confidence 34589999999999988773 23 24554 4999998 53
No 302
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=42.76 E-value=9.7 Score=39.18 Aligned_cols=33 Identities=15% Similarity=0.045 Sum_probs=24.7
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPH 300 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~ 300 (782)
+..+||||.||.|+++.-+. .. .+| .|||+++-
T Consensus 74 ~g~~VLDlGcGtG~~s~~la----~~-~~V---~gvD~s~m 106 (265)
T 2oxt_A 74 LTGRVVDLGCGRGGWSYYAA----SR-PHV---MDVRAYTL 106 (265)
T ss_dssp CCEEEEEESCTTSHHHHHHH----TS-TTE---EEEEEECC
T ss_pred CCCEEEEeCcCCCHHHHHHH----Hc-CcE---EEEECchh
Confidence 45689999999999998773 23 343 49999873
No 303
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=42.65 E-value=20 Score=36.63 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=33.9
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
..-+||||=||.|=++..+ . .+.. ++|+|+|+.+++..+.|.
T Consensus 105 ~p~~VLDlGCG~gpLal~~----~-~~~~---y~a~DId~~~i~~ar~~~ 146 (253)
T 3frh_A 105 TPRRVLDIACGLNPLALYE----R-GIAS---VWGCDIHQGLGDVITPFA 146 (253)
T ss_dssp CCSEEEEETCTTTHHHHHH----T-TCSE---EEEEESBHHHHHHHHHHH
T ss_pred CCCeEEEecCCccHHHHHh----c-cCCe---EEEEeCCHHHHHHHHHHH
Confidence 4569999999999999877 3 3333 479999999999998874
No 304
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=41.75 E-value=27 Score=41.04 Aligned_cols=60 Identities=18% Similarity=0.283 Sum_probs=42.8
Q ss_pred CcceeccccccchhHHH-HHHhhhhcC---------CceeeEEEEecCHHHHHHHHHh----CCC-CcccccchHHH
Q 003974 261 EMSLLDLYSGCGAMSTG-LCIGASLSG---------VKLVTRWAIDINPHACKSLKFN----HPE-TKVRNEAADDF 322 (782)
Q Consensus 261 ~~~~ldlf~G~Gg~s~G-l~~g~~~aG---------~~~~~~~ave~~~~a~~t~~~N----~p~-~~~~~~d~~~~ 322 (782)
...|+|+=||-|-+++- | .+++.|| ..+ .++|||.++.|..+++.. +.+ ..|+.+|++++
T Consensus 410 ~~VVldVGaGtGpLs~~al-~A~~~a~~~~~~~~~~~~~-kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev 484 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKIL-KSEREYNNTFRQGQESLKV-KLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSL 484 (745)
T ss_dssp EEEEEEESCTTCHHHHHHH-HHHHHHHHHHSTTSCCCEE-EEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGH
T ss_pred CcEEEEECCCCCHHHHHHH-HHHHHhCcccccccccccc-EEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhc
Confidence 46799999999999863 3 2333455 333 358999999998776643 333 67888899886
No 305
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=40.99 E-value=12 Score=39.14 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=32.7
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPE 311 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~ 311 (782)
...++||+-||.|+++.-| ...|..-+ +|||+++...+.-..+++.
T Consensus 85 ~g~~vLDiGcGTG~~t~~L----~~~ga~~V--~aVDvs~~mL~~a~r~~~r 130 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVM----LQNGAKLV--YAVDVGTNQLVWKLRQDDR 130 (291)
T ss_dssp TTCEEEEETCTTSHHHHHH----HHTTCSEE--EEECSSSSCSCHHHHTCTT
T ss_pred cccEEEecCCCccHHHHHH----HhCCCCEE--EEEECCHHHHHHHHHhCcc
Confidence 3468999999999999766 34575423 6999998766553345554
No 306
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=40.93 E-value=11 Score=39.10 Aligned_cols=32 Identities=19% Similarity=0.161 Sum_probs=24.5
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINP 299 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~ 299 (782)
+..++|||-||.|+++.-+. + .| +| .|||+++
T Consensus 82 ~g~~VLDlGcGtG~~s~~la---~-~~-~V---~gVD~s~ 113 (276)
T 2wa2_A 82 LKGTVVDLGCGRGSWSYYAA---S-QP-NV---REVKAYT 113 (276)
T ss_dssp CCEEEEEESCTTCHHHHHHH---T-ST-TE---EEEEEEC
T ss_pred CCCEEEEeccCCCHHHHHHH---H-cC-CE---EEEECch
Confidence 45689999999999998773 2 33 44 4999987
No 307
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=39.89 E-value=22 Score=38.44 Aligned_cols=42 Identities=12% Similarity=0.214 Sum_probs=35.2
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHh
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFN 308 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N 308 (782)
+..++||+-||.|.+..-| ...|.++ .++|+++.+++..+.+
T Consensus 107 ~~~~VLDiGcG~G~~~~~l----~~~g~~v---~gvD~s~~~~~~a~~~ 148 (416)
T 4e2x_A 107 PDPFIVEIGCNDGIMLRTI----QEAGVRH---LGFEPSSGVAAKAREK 148 (416)
T ss_dssp SSCEEEEETCTTTTTHHHH----HHTTCEE---EEECCCHHHHHHHHTT
T ss_pred CCCEEEEecCCCCHHHHHH----HHcCCcE---EEECCCHHHHHHHHHc
Confidence 4569999999999998877 4568765 4999999999888776
No 308
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=39.13 E-value=24 Score=35.11 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=33.2
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP 310 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p 310 (782)
...+|||+-||.|..+.-+ ...+.. .+.+||+++..++..+.+..
T Consensus 60 ~G~rVLdiG~G~G~~~~~~----~~~~~~--~v~~id~~~~~~~~a~~~~~ 104 (236)
T 3orh_A 60 KGGRVLEVGFGMAIAASKV----QEAPID--EHWIIECNDGVFQRLRDWAP 104 (236)
T ss_dssp TCEEEEEECCTTSHHHHHH----TTSCEE--EEEEEECCHHHHHHHHHHGG
T ss_pred CCCeEEEECCCccHHHHHH----HHhCCc--EEEEEeCCHHHHHHHHHHHh
Confidence 4468999999999887666 233322 33599999999988887653
No 309
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=38.67 E-value=25 Score=36.28 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=31.6
Q ss_pred CCcceeccccccchh--HHHHHHhhhhc-----CCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAM--STGLCIGASLS-----GVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~--s~Gl~~g~~~a-----G~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
..++++|+-||.|.- |+++.+. +.. |+++ .|+|+++.|.+.-+.+.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~-e~~~~~~~~~~I---~atDis~~~L~~Ar~~~ 157 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLA-DALGMAPGRWKV---FASDIDTEVLEKARSGI 157 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHH-HHHCSCTTSEEE---EEEESCHHHHHHHHHTE
T ss_pred CCcEEEEeeccCChhHHHHHHHHH-HhcccCCCCeEE---EEEECCHHHHHHHHhcC
Confidence 358999999999983 2222111 121 3443 69999999999999874
No 310
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=37.51 E-value=12 Score=35.35 Aligned_cols=37 Identities=24% Similarity=0.207 Sum_probs=30.1
Q ss_pred Ccceeccccccc-hhHHHHHHhhhhcCCceeeEEEEecCHHHHH
Q 003974 261 EMSLLDLYSGCG-AMSTGLCIGASLSGVKLVTRWAIDINPHACK 303 (782)
Q Consensus 261 ~~~~ldlf~G~G-g~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~ 303 (782)
.-++|++=||-| -.+.-|. +..|++|+ |+|+++.|+.
T Consensus 36 ~~rVlEVG~G~g~~vA~~La---~~~g~~V~---atDInp~Av~ 73 (153)
T 2k4m_A 36 GTRVVEVGAGRFLYVSDYIR---KHSKVDLV---LTDIKPSHGG 73 (153)
T ss_dssp SSEEEEETCTTCCHHHHHHH---HHSCCEEE---EECSSCSSTT
T ss_pred CCcEEEEccCCChHHHHHHH---HhCCCeEE---EEECCccccc
Confidence 459999999999 5776662 34999976 9999999988
No 311
>3zzs_A Transcription attenuation protein MTRB; transcription regulation, protein engineering; HET: TRP; 1.49A {Geobacillus stearothermophilus} SCOP: b.82.5.1 PDB: 3zzq_A* 3zzl_A*
Probab=35.23 E-value=81 Score=24.91 Aligned_cols=48 Identities=17% Similarity=0.165 Sum_probs=37.1
Q ss_pred EEEEEEEeccccccccccccCCCCeEEEeCCcCCccccccceeeEEEee
Q 003974 150 FKARWFYRAEDTVIKDLACLVDRKRVFLSDVEDDNPLNCIVSKAKIAEV 198 (782)
Q Consensus 150 v~v~WfyRp~dtv~~~~~~~~~~rELFlS~~~d~~~~~~I~gkc~V~~~ 198 (782)
|+|.=+-|+.||... +....|..||...+-.+..++-.|+||+.|+..
T Consensus 13 V~VigltRg~dtkfh-htEkLdkGEVmiaQftehtsaiKiRGkA~i~t~ 60 (65)
T 3zzs_A 13 VNVIGLTRGADTRFH-HSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTR 60 (65)
T ss_dssp EEEEC-CCSSSCCCC-CEEEECTTCEEEEECCSSCSEEEEESSEEEEET
T ss_pred eEEEEeeccCCccch-hhhccCCCcEEEEEeecceeEEEEeceEEEEee
Confidence 555566788888432 234578999999999999999999999999754
No 312
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=34.57 E-value=34 Score=32.27 Aligned_cols=49 Identities=22% Similarity=0.248 Sum_probs=35.9
Q ss_pred cccccchhHHHHHHhhhhc-CCceeeEEEEecCHHHHHHHHHhCCCCcccccchH
Q 003974 267 LYSGCGAMSTGLCIGASLS-GVKLVTRWAIDINPHACKSLKFNHPETKVRNEAAD 320 (782)
Q Consensus 267 lf~G~Gg~s~Gl~~g~~~a-G~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~ 320 (782)
+.+|+|.+...+...+... |++|+ ++|.++..++.++.. +..++.+|..
T Consensus 43 ~IiG~G~~G~~~a~~L~~~~g~~V~---vid~~~~~~~~~~~~--g~~~~~gd~~ 92 (183)
T 3c85_A 43 LILGMGRIGTGAYDELRARYGKISL---GIEIREEAAQQHRSE--GRNVISGDAT 92 (183)
T ss_dssp EEECCSHHHHHHHHHHHHHHCSCEE---EEESCHHHHHHHHHT--TCCEEECCTT
T ss_pred EEECCCHHHHHHHHHHHhccCCeEE---EEECCHHHHHHHHHC--CCCEEEcCCC
Confidence 4569999888887777778 99865 799999988887753 3444544543
No 313
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=33.88 E-value=25 Score=35.86 Aligned_cols=45 Identities=18% Similarity=0.021 Sum_probs=31.8
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP 310 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p 310 (782)
...++|||-||.|..+. + .+...|.+| .++|+++.+++..+.+..
T Consensus 71 ~~~~vLDiGcG~G~~~~-l--~~~~~~~~v---~gvD~s~~~l~~a~~~~~ 115 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQL-L--SACSHFEDI---TMTDFLEVNRQELGRWLQ 115 (289)
T ss_dssp CCSEEEEETCTTCCGGG-T--TGGGGCSEE---EEECSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCcChHHH-H--hhccCCCeE---EEeCCCHHHHHHHHHHHh
Confidence 44689999999998442 2 112235554 499999999988877654
No 314
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=32.81 E-value=23 Score=35.57 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=30.8
Q ss_pred CCcceeccccccchhHHHHHHhhhhcC--CceeeEEEEecCHH------HHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSG--VKLVTRWAIDINPH------ACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG--~~~~~~~ave~~~~------a~~t~~~N~ 309 (782)
+..++||+-||.|.++.-+. ...| .++ .++|+++. +++..+.+.
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~---~~~g~~~~v---~gvD~s~~~~~~~~~~~~a~~~~ 94 (275)
T 3bkx_A 43 PGEKILEIGCGQGDLSAVLA---DQVGSSGHV---TGIDIASPDYGAPLTLGQAWNHL 94 (275)
T ss_dssp TTCEEEEESCTTSHHHHHHH---HHHCTTCEE---EEECSSCTTCCSSSCHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHH---HHhCCCCEE---EEEECCccccccHHHHHHHHHHH
Confidence 44689999999999988773 2324 454 49999986 555555543
No 315
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=32.73 E-value=23 Score=37.13 Aligned_cols=31 Identities=23% Similarity=0.131 Sum_probs=23.0
Q ss_pred CCCcceeccccccchhHHHHHHhhhhcCCceeeEEEEec
Q 003974 259 QPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDI 297 (782)
Q Consensus 259 ~~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~ 297 (782)
++..+||||.||.|+++.-+. ..| +| .|||+
T Consensus 81 ~~g~~VLDlGcG~G~~s~~la----~~~-~V---~gvD~ 111 (305)
T 2p41_A 81 TPEGKVVDLGCGRGGWSYYCG----GLK-NV---REVKG 111 (305)
T ss_dssp CCCEEEEEETCTTSHHHHHHH----TST-TE---EEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHH----hcC-CE---EEEec
Confidence 345699999999999987663 334 43 48998
No 316
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=30.35 E-value=54 Score=37.14 Aligned_cols=47 Identities=13% Similarity=0.044 Sum_probs=32.2
Q ss_pred cceeccccccchhHHHHHHhhhhcCCc--------eeeEEEEecCHHHHHHHHHh
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSGVK--------LVTRWAIDINPHACKSLKFN 308 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG~~--------~~~~~ave~~~~a~~t~~~N 308 (782)
-+++|-+||.|||-+..-.-+...+-. -..++++|+++.+...-++|
T Consensus 219 ~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mN 273 (530)
T 3ufb_A 219 ESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMN 273 (530)
T ss_dssp CCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHH
T ss_pred CEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHH
Confidence 489999999999876653222221111 12468999999998887776
No 317
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=30.06 E-value=57 Score=28.58 Aligned_cols=49 Identities=27% Similarity=0.371 Sum_probs=34.3
Q ss_pred cccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccch
Q 003974 267 LYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAA 319 (782)
Q Consensus 267 lf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~ 319 (782)
+..|+|.+...+...+...|.+++ .+|.++..++.+..++ +..++..|.
T Consensus 8 ~IiG~G~iG~~~a~~L~~~g~~v~---~~d~~~~~~~~~~~~~-~~~~~~~d~ 56 (140)
T 1lss_A 8 IIAGIGRVGYTLAKSLSEKGHDIV---LIDIDKDICKKASAEI-DALVINGDC 56 (140)
T ss_dssp EEECCSHHHHHHHHHHHHTTCEEE---EEESCHHHHHHHHHHC-SSEEEESCT
T ss_pred EEECCCHHHHHHHHHHHhCCCeEE---EEECCHHHHHHHHHhc-CcEEEEcCC
Confidence 345999888888777778898764 7899998888776654 233344443
No 318
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=29.57 E-value=52 Score=31.99 Aligned_cols=52 Identities=10% Similarity=0.087 Sum_probs=39.7
Q ss_pred cccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhCCCCcccccchHHH
Q 003974 267 LYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDF 322 (782)
Q Consensus 267 lf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~~ 322 (782)
+.+|+|-+...+...+...|++++ .+|.|+..++.+.... +..++.+|+.+.
T Consensus 4 iIiG~G~~G~~la~~L~~~g~~v~---vid~~~~~~~~l~~~~-~~~~i~gd~~~~ 55 (218)
T 3l4b_C 4 IIIGGETTAYYLARSMLSRKYGVV---IINKDRELCEEFAKKL-KATIIHGDGSHK 55 (218)
T ss_dssp EEECCHHHHHHHHHHHHHTTCCEE---EEESCHHHHHHHHHHS-SSEEEESCTTSH
T ss_pred EEECCCHHHHHHHHHHHhCCCeEE---EEECCHHHHHHHHHHc-CCeEEEcCCCCH
Confidence 567999888888777788999875 7999999988876544 455677776653
No 319
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=29.10 E-value=40 Score=34.47 Aligned_cols=56 Identities=23% Similarity=0.196 Sum_probs=38.6
Q ss_pred cceecccccc---chhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC---CCCcccccchHHH
Q 003974 262 MSLLDLYSGC---GAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH---PETKVRNEAADDF 322 (782)
Q Consensus 262 ~~~ldlf~G~---Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~---p~~~~~~~d~~~~ 322 (782)
-++|||=||. |.+..-+. ....|.+++ +||+++..++.-+.+. +.+.++..|+.+.
T Consensus 79 ~~vLDlGcG~pt~G~~~~~~~--~~~p~~~v~---~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~ 140 (274)
T 2qe6_A 79 SQFLDLGSGLPTVQNTHEVAQ--SVNPDARVV---YVDIDPMVLTHGRALLAKDPNTAVFTADVRDP 140 (274)
T ss_dssp CEEEEETCCSCCSSCHHHHHH--HHCTTCEEE---EEESSHHHHHHHHHHHTTCTTEEEEECCTTCH
T ss_pred CEEEEECCCCCCCChHHHHHH--HhCCCCEEE---EEECChHHHHHHHHhcCCCCCeEEEEeeCCCc
Confidence 4899999999 86654331 112466654 9999999888877765 4556677777653
No 320
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=28.76 E-value=55 Score=34.58 Aligned_cols=44 Identities=11% Similarity=0.209 Sum_probs=32.7
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
...++||+-||.|.++.-|.. ...+.++ .++|+ +.+++..+.|.
T Consensus 182 ~~~~vlDvG~G~G~~~~~l~~--~~~~~~~---~~~D~-~~~~~~a~~~~ 225 (374)
T 1qzz_A 182 AVRHVLDVGGGNGGMLAAIAL--RAPHLRG---TLVEL-AGPAERARRRF 225 (374)
T ss_dssp TCCEEEEETCTTSHHHHHHHH--HCTTCEE---EEEEC-HHHHHHHHHHH
T ss_pred CCCEEEEECCCcCHHHHHHHH--HCCCCEE---EEEeC-HHHHHHHHHHH
Confidence 446999999999999888742 1224554 48999 98888877764
No 321
>3zte_A Tryptophan operon RNA-binding attenuation protein; RNA-binding protein, transcription factors, trinucleotide RE; HET: TRP; 2.41A {Bacillus licheniformis} SCOP: b.82.5.1
Probab=28.75 E-value=1.1e+02 Score=24.96 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=38.2
Q ss_pred EEEEEEEeccccccccccccCCCCeEEEeCCcCCccccccceeeEEEeeC
Q 003974 150 FKARWFYRAEDTVIKDLACLVDRKRVFLSDVEDDNPLNCIVSKAKIAEVA 199 (782)
Q Consensus 150 v~v~WfyRp~dtv~~~~~~~~~~rELFlS~~~d~~~~~~I~gkc~V~~~~ 199 (782)
|+|.=+-|+.||... +....|..||.+.+-.+..++-.|+||+.|+...
T Consensus 21 V~VIGltRG~dtkfh-HtEkLdkGEVmIaQFTehtsaiKiRGkA~I~t~~ 69 (78)
T 3zte_A 21 VNVIGLTRGTDTRFH-HSEKLDKGEVMICQFTEHTSAIKVRGEALIQTAN 69 (78)
T ss_dssp EEEEEEECSSSCCEE-EEEEECTTCEEEEECCSSEEEEEEESSEEEEETT
T ss_pred eEEEEeeccCCcccc-eehccCCCcEEEEEeecceeEEEEeeeEEEEecc
Confidence 555566788888422 2345689999999999999999999999998654
No 322
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=27.72 E-value=42 Score=34.82 Aligned_cols=44 Identities=14% Similarity=0.247 Sum_probs=32.5
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
...++||+-||.|.++.-+.. ...+.++ .++|++ .+++..+.+.
T Consensus 165 ~~~~vlDvG~G~G~~~~~l~~--~~p~~~~---~~~D~~-~~~~~a~~~~ 208 (335)
T 2r3s_A 165 EPLKVLDISASHGLFGIAVAQ--HNPNAEI---FGVDWA-SVLEVAKENA 208 (335)
T ss_dssp CCSEEEEETCTTCHHHHHHHH--HCTTCEE---EEEECH-HHHHHHHHHH
T ss_pred CCCEEEEECCCcCHHHHHHHH--HCCCCeE---EEEecH-HHHHHHHHHH
Confidence 456999999999998887742 2235665 489999 8877777654
No 323
>1uwk_A Urocanate hydratase; hydrolase, urocanase, imidazolonepropionate, histidine metabolism, lyase; HET: NAD URO; 1.19A {Pseudomonas putida} SCOP: e.51.1.1 PDB: 1w1u_A* 1uwl_A* 2v7g_A*
Probab=26.14 E-value=1.6e+02 Score=32.85 Aligned_cols=60 Identities=18% Similarity=0.130 Sum_probs=43.0
Q ss_pred eeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHH-hCCCCcccccchHHHHHHHHH
Q 003974 264 LLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKF-NHPETKVRNEAADDFLSLLKE 328 (782)
Q Consensus 264 ~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~-N~p~~~~~~~d~~~~~~~~~~ 328 (782)
-+-|=||.|||+=.=-+++..+|.-. .++|+|+.+++.-.. .+ ...+..|+++.+..+++
T Consensus 168 ~~~lTaGLGGMgGAQplA~~mag~v~---i~~Evd~~ri~~R~~~gy--ld~~~~~ldeal~~~~~ 228 (557)
T 1uwk_A 168 KWVLTAGLGGMGGAQPLAATLAGACS---LNIESQQSRIDFRLETRY--VDEQATDLDDALVRIAK 228 (557)
T ss_dssp CEEEEECCSTTTTHHHHHHHHTTCEE---EEEESCHHHHHHHHHTTS--CCEECSSHHHHHHHHHH
T ss_pred eEEEEecCCccchhhHHHHHHcCceE---EEEEECHHHHHHHHhCCC--ceeEcCCHHHHHHHHHH
Confidence 35577999999955557888999754 379999999887544 33 33456677777766655
No 324
>1x87_A Urocanase protein; structural genomics, protein STR initiative, MCSG, PSI, midwest center for structural genomi; HET: MSE NAD; 2.40A {Geobacillus stearothermophilus} SCOP: e.51.1.1
Probab=25.63 E-value=1.7e+02 Score=32.63 Aligned_cols=60 Identities=20% Similarity=0.287 Sum_probs=43.0
Q ss_pred eeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHH-hCCCCcccccchHHHHHHHHH
Q 003974 264 LLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKF-NHPETKVRNEAADDFLSLLKE 328 (782)
Q Consensus 264 ~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~-N~p~~~~~~~d~~~~~~~~~~ 328 (782)
-+-|=||.|||+=.=-+++..+|.-. .++|+|+.+++.-.. .+ ...+..|+++.+..+++
T Consensus 163 ~~~lTaGLGGMgGAQplA~~mag~v~---i~~Evd~~ri~~R~~~gy--ld~~~~~ldeal~~~~~ 223 (551)
T 1x87_A 163 TITLTAGLGGMGGAQPLAVTMNGGVC---LAIEVDPARIQRRIDTNY--LDTMTDSLDAALEMAKQ 223 (551)
T ss_dssp CEEEEECCSTTGGGHHHHHHHTTCEE---EEEESCHHHHHHHHHTTS--CSEEESCHHHHHHHHHH
T ss_pred eEEEEecCCccchhhHHHHHHcCceE---EEEEECHHHHHHHHhCCC--ceeEcCCHHHHHHHHHH
Confidence 35577999999955557888999754 379999999887544 33 33456677777766655
No 325
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=25.32 E-value=53 Score=34.67 Aligned_cols=43 Identities=16% Similarity=0.292 Sum_probs=32.0
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHh
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFN 308 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N 308 (782)
...++||+-||.|.++.-|.. ...+.+++ ++|+ +.+++..+.|
T Consensus 190 ~~~~vLDvG~G~G~~~~~l~~--~~p~~~~~---~~D~-~~~~~~a~~~ 232 (359)
T 1x19_A 190 GVKKMIDVGGGIGDISAAMLK--HFPELDST---ILNL-PGAIDLVNEN 232 (359)
T ss_dssp TCCEEEEESCTTCHHHHHHHH--HCTTCEEE---EEEC-GGGHHHHHHH
T ss_pred CCCEEEEECCcccHHHHHHHH--HCCCCeEE---EEec-HHHHHHHHHH
Confidence 346899999999999988742 22356654 8999 8888777765
No 326
>2fkn_A Urocanate hydratase; rossman fold, lyase; HET: NAD; 2.20A {Bacillus subtilis}
Probab=25.27 E-value=1.7e+02 Score=32.69 Aligned_cols=60 Identities=13% Similarity=0.200 Sum_probs=43.1
Q ss_pred eeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHH-hCCCCcccccchHHHHHHHHH
Q 003974 264 LLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKF-NHPETKVRNEAADDFLSLLKE 328 (782)
Q Consensus 264 ~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~-N~p~~~~~~~d~~~~~~~~~~ 328 (782)
-+-|=||.|||+=.=-+++..+|.-. .++|+|+.+++.-.. .+ ...+..|+++.+..+++
T Consensus 164 ~~~lTaGLGGMgGAQplA~~mag~v~---i~~Evd~~ri~~R~~~gy--ld~~~~~ldeal~~~~~ 224 (552)
T 2fkn_A 164 TLTLTAGLGGMGGAQPLSVTMNEGVV---IAVEVDEKRIDKRIETKY--CDRKTASIEEALAWAEE 224 (552)
T ss_dssp CEEEEECCSTTTTHHHHHHHHTTCEE---EEEESCHHHHHHHHHTTS--CSEEESCHHHHHHHHHH
T ss_pred eEEEEecCCccchhhHHHHHHcCceE---EEEEECHHHHHHHHhCCc--ceeEcCCHHHHHHHHHH
Confidence 35577999999955557888999754 479999999887544 33 33456677777766655
No 327
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=23.69 E-value=62 Score=25.34 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=23.0
Q ss_pred EEeeCCEEEEeeCCCCccEEEEEeEEee
Q 003974 115 LYNLGDDAYVKAEEGAVDYIARIVELFE 142 (782)
Q Consensus 115 ~y~vGD~V~v~~~~~~~~~Ia~I~~m~e 142 (782)
.+.+|+.|++.-. +..+|.|.|+++-.
T Consensus 3 ~f~~GedVLarws-DG~fYlGtI~~V~~ 29 (58)
T 4hcz_A 3 RLWEGQDVLARWT-DGLLYLGTIKKVDS 29 (58)
T ss_dssp SCCTTCEEEEECT-TSCEEEEEEEEEET
T ss_pred ccccCCEEEEEec-CCCEEeEEEEEEec
Confidence 4678999999988 47889999999854
No 328
>2dpm_A M.dpnii 1, protein (adenine-specific methyltransferase dpnii 1); DNA adenine methyltransferase, methylase; HET: SAM; 1.80A {Streptococcus pneumoniae} SCOP: c.66.1.28
Probab=23.41 E-value=91 Score=32.21 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=28.6
Q ss_pred cceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHH
Q 003974 262 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKF 307 (782)
Q Consensus 262 ~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~ 307 (782)
-+.+|.|+|.|++...+ . . + ..+.+|+|+.-+..|+.
T Consensus 37 ~~yvEpF~GggaV~~~~----~-~--~--~~i~ND~n~~Lin~y~~ 73 (284)
T 2dpm_A 37 NRYFEPFVGGGALFFDL----A-P--K--DAVINDFNAELINCYQQ 73 (284)
T ss_dssp SCEEETTCTTCHHHHHH----C-C--S--EEEEEESCHHHHHHHHH
T ss_pred CEEEeecCCccHHHHhh----h-c--c--ceeeeecchHHHHHHHH
Confidence 37999999999877655 2 2 2 23689999999999965
No 329
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=22.87 E-value=63 Score=25.90 Aligned_cols=28 Identities=11% Similarity=0.062 Sum_probs=24.5
Q ss_pred EEEeeCCEEEEeeCCCCccEEEEEeEEe
Q 003974 114 CLYNLGDDAYVKAEEGAVDYIARIVELF 141 (782)
Q Consensus 114 ~~y~vGD~V~v~~~~~~~~~Ia~I~~m~ 141 (782)
..|++||.|+-+=..+..+|-++|.++-
T Consensus 8 ~~~~vgd~VmaRW~Gd~~yYparI~Si~ 35 (66)
T 2l8d_A 8 RKYADGEVVMGRWPGSVLYYEVQVTSYD 35 (66)
T ss_dssp SSSCSSCEEEEECTTSSCEEEEEEEEEE
T ss_pred eEeecCCEEEEEcCCCccceEEEEEEec
Confidence 4689999999998558889999999986
No 330
>1gtf_A Trp RNA-binding attenuation protein (trap); RNA binding protein-RNA complex, transcription attenuation, RNA-binding protein, Trp RNA; HET: TRP; 1.75A {Bacillus stearothermophilus} SCOP: b.82.5.1 PDB: 1c9s_A* 1gtn_A* 1qaw_A* 1utd_A* 1utf_A* 1utv_A* 2zp8_A* 3aqd_A 2zcz_A* 2zp9_A* 2zd0_A* 2ext_A* 2exs_A* 1wap_A*
Probab=22.81 E-value=1.8e+02 Score=23.27 Aligned_cols=49 Identities=16% Similarity=0.156 Sum_probs=39.2
Q ss_pred EEEEEEEeccccccccccccCCCCeEEEeCCcCCccccccceeeEEEeeC
Q 003974 150 FKARWFYRAEDTVIKDLACLVDRKRVFLSDVEDDNPLNCIVSKAKIAEVA 199 (782)
Q Consensus 150 v~v~WfyRp~dtv~~~~~~~~~~rELFlS~~~d~~~~~~I~gkc~V~~~~ 199 (782)
|++.=+-|+.||... +....|..||.+..-.+.-++-.|+||+.|....
T Consensus 17 V~viGLTRG~dTkFh-HtEKLDkGEVmiaQFTehTSAiKiRGka~i~t~~ 65 (74)
T 1gtf_A 17 VNVIGLTRGADTRFH-HSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRH 65 (74)
T ss_dssp EEEEEEECSSSCCEE-EEEEECTTCEEEEECCSSEEEEEEESSEEEEETT
T ss_pred eEEEEeccCCccccc-chhhcCCCcEEEEEeccceeeEEEeccEEEEeec
Confidence 566667888888533 2345689999999999999999999999998654
No 331
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=22.06 E-value=98 Score=24.91 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=23.9
Q ss_pred EEeeCCEEEEeeCCCCccEEEEEeEEeec
Q 003974 115 LYNLGDDAYVKAEEGAVDYIARIVELFES 143 (782)
Q Consensus 115 ~y~vGD~V~v~~~~~~~~~Ia~I~~m~e~ 143 (782)
.|.+||.|+..=. +...|.|.|.++.+.
T Consensus 13 ~f~vGddVLA~wt-DGl~Y~gtI~~V~~~ 40 (66)
T 2eqj_A 13 KFEEGQDVLARWS-DGLFYLGTIKKINIL 40 (66)
T ss_dssp CSCTTCEEEEECT-TSCEEEEEEEEEETT
T ss_pred cccCCCEEEEEEc-cCcEEEeEEEEEccC
Confidence 6899999999875 578899999999763
No 332
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=21.94 E-value=90 Score=31.67 Aligned_cols=50 Identities=16% Similarity=0.265 Sum_probs=32.8
Q ss_pred CCCcceeccccccchhHHHHH--HhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 259 QPEMSLLDLYSGCGAMSTGLC--IGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 259 ~~~~~~ldlf~G~Gg~s~Gl~--~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
.+..+|||+=||.|.++.-+- +.+...++.+ ...++|.++..++..+.+.
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v-~~~~vD~S~~ml~~a~~~~ 102 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCI-NNEVVEPSAEQIAKYKELV 102 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEE-EEEEECSCHHHHHHHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCcee-eEEEEeCCHHHHHHHHHHH
Confidence 355799999999998775432 1112234432 1259999999888777653
No 333
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=21.89 E-value=85 Score=28.48 Aligned_cols=51 Identities=14% Similarity=0.144 Sum_probs=35.8
Q ss_pred ccccchhHHHHHHhhhhcCCceeeEEEEecC-HHHHHHHHHhCC-CCcccccchHH
Q 003974 268 YSGCGAMSTGLCIGASLSGVKLVTRWAIDIN-PHACKSLKFNHP-ETKVRNEAADD 321 (782)
Q Consensus 268 f~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~-~~a~~t~~~N~p-~~~~~~~d~~~ 321 (782)
.+|+|.+...+...+...|++++ .+|.+ +..++.+....+ +..++.+|+.+
T Consensus 8 I~G~G~vG~~la~~L~~~g~~V~---vid~~~~~~~~~~~~~~~~~~~~i~gd~~~ 60 (153)
T 1id1_A 8 VCGHSILAINTILQLNQRGQNVT---VISNLPEDDIKQLEQRLGDNADVIPGDSND 60 (153)
T ss_dssp EECCSHHHHHHHHHHHHTTCCEE---EEECCCHHHHHHHHHHHCTTCEEEESCTTS
T ss_pred EECCCHHHHHHHHHHHHCCCCEE---EEECCChHHHHHHHHhhcCCCeEEEcCCCC
Confidence 45889888888777778899876 78997 565666654433 46677777654
No 334
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=21.80 E-value=65 Score=33.84 Aligned_cols=44 Identities=11% Similarity=0.161 Sum_probs=31.2
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHHhC
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 309 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~N~ 309 (782)
...++||+-||.|.++..|.. ...++++ .++|+ +.+++..+.|.
T Consensus 183 ~~~~vLDvG~G~G~~~~~l~~--~~~~~~~---~~~D~-~~~~~~a~~~~ 226 (360)
T 1tw3_A 183 NVRHVLDVGGGKGGFAAAIAR--RAPHVSA---TVLEM-AGTVDTARSYL 226 (360)
T ss_dssp TCSEEEEETCTTSHHHHHHHH--HCTTCEE---EEEEC-TTHHHHHHHHH
T ss_pred cCcEEEEeCCcCcHHHHHHHH--hCCCCEE---EEecC-HHHHHHHHHHH
Confidence 346899999999999887732 1223443 48898 88887777654
No 335
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} SCOP: b.34.9.0
Probab=21.61 E-value=46 Score=31.44 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=25.2
Q ss_pred CCEEEeeCCEEEEeeCCCCccEEEEEeEEe
Q 003974 112 DGCLYNLGDDAYVKAEEGAVDYIARIVELF 141 (782)
Q Consensus 112 ~G~~y~vGD~V~v~~~~~~~~~Ia~I~~m~ 141 (782)
+|..|.+||-|..+-. +-+.|-|+|...-
T Consensus 13 dg~~f~~GDLVWaKvk-G~PwWPa~V~~~~ 41 (154)
T 3llr_A 13 DGRGFGIGELVWGKLR-GFSWWPGRIVSWW 41 (154)
T ss_dssp SSCCCCTTCEEEECCT-TSCCEEEEEECGG
T ss_pred cCCCCccCCEEEEecC-CCCCCCEEEeccc
Confidence 5778999999999987 7789999998864
No 336
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=21.61 E-value=98 Score=35.93 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=33.8
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKF 307 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~~ 307 (782)
....|+|+=||-|-++.---.+++.+|.++. +||||.++.|..+.+.
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vk-VyAVEknp~A~~a~~~ 403 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIK-LYAVEKNPNAVVTLEN 403 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEE-EEEEESCHHHHHHHHH
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcE-EEEEECCHHHHHHHHH
Confidence 3457999999999886533244455666653 5999999998776654
No 337
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=20.95 E-value=32 Score=37.87 Aligned_cols=53 Identities=15% Similarity=0.259 Sum_probs=37.3
Q ss_pred Ccceeccccc------cchhHHHHHHhhhh-cCCceeeEEEEecCHHHHHHHHHhCCCCcccccchHHH
Q 003974 261 EMSLLDLYSG------CGAMSTGLCIGASL-SGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDF 322 (782)
Q Consensus 261 ~~~~ldlf~G------~Gg~s~Gl~~g~~~-aG~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~~~~ 322 (782)
..++|||=|| .||.++-+.. +. -+.++ .+||+++... .+.++..++.+|+.++
T Consensus 217 ~~rVLDIGCG~~~~~~TGG~Sl~la~--~~fP~a~V---~GVDiSp~m~----~~~~rI~fv~GDa~dl 276 (419)
T 3sso_A 217 QVRVLEIGVGGYKHPEWGGGSLRMWK--SFFPRGQI---YGLDIMDKSH----VDELRIRTIQGDQNDA 276 (419)
T ss_dssp CCEEEEECCSCTTCSSCCCHHHHHHH--HHCTTCEE---EEEESSCCGG----GCBTTEEEEECCTTCH
T ss_pred CCEEEEEecCCCcCCCCCHHHHHHHH--HhCCCCEE---EEEECCHHHh----hcCCCcEEEEeccccc
Confidence 4699999999 5787776631 21 24454 5999999863 3567777888888764
No 338
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=20.92 E-value=75 Score=25.54 Aligned_cols=28 Identities=11% Similarity=0.019 Sum_probs=24.7
Q ss_pred EEEeeCCEEEEeeCCCCccEEEEEeEEe
Q 003974 114 CLYNLGDDAYVKAEEGAVDYIARIVELF 141 (782)
Q Consensus 114 ~~y~vGD~V~v~~~~~~~~~Ia~I~~m~ 141 (782)
..|++||.|+-+=..+..+|-++|.++-
T Consensus 11 ~~f~vgd~VmaRW~Gd~~yYparItSit 38 (68)
T 2dig_A 11 RKFADGEVVRGRWPGSSLYYEVEILSHD 38 (68)
T ss_dssp CSSCSSCEEEEECTTTCCEEEEEEEEEE
T ss_pred eEeecCCEEEEEccCCccceEEEEEEec
Confidence 4789999999998767889999999986
No 339
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=20.56 E-value=97 Score=33.08 Aligned_cols=43 Identities=30% Similarity=0.242 Sum_probs=32.2
Q ss_pred CCcceeccccccchhHHHHHHhhhhcCCceeeEEEEecCHHHHHHHH
Q 003974 260 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLK 306 (782)
Q Consensus 260 ~~~~~ldlf~G~Gg~s~Gl~~g~~~aG~~~~~~~ave~~~~a~~t~~ 306 (782)
+.-.+||.-+|.||-|..|. +..|-+- .++|+|.|+.|++.-+
T Consensus 57 pggiyVD~TlG~GGHS~~iL---~~lg~~G-rVig~D~Dp~Al~~A~ 99 (347)
T 3tka_A 57 PDGIYIDGTFGRGGHSRLIL---SQLGEEG-RLLAIDRDPQAIAVAK 99 (347)
T ss_dssp TTCEEEESCCTTSHHHHHHH---TTCCTTC-EEEEEESCHHHHHHHT
T ss_pred CCCEEEEeCcCCCHHHHHHH---HhCCCCC-EEEEEECCHHHHHHHH
Confidence 44589999999999999883 3433222 2369999999988764
No 340
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=20.02 E-value=96 Score=26.10 Aligned_cols=46 Identities=15% Similarity=0.097 Sum_probs=31.7
Q ss_pred cccchhHHHHHHhhhhcC-CceeeEEEEecCHHHHHHHHHhCCCCcccccch
Q 003974 269 SGCGAMSTGLCIGASLSG-VKLVTRWAIDINPHACKSLKFNHPETKVRNEAA 319 (782)
Q Consensus 269 ~G~Gg~s~Gl~~g~~~aG-~~~~~~~ave~~~~a~~t~~~N~p~~~~~~~d~ 319 (782)
-|+|++...+...+...| .++ .+++.++...+.+. .++......|+
T Consensus 11 ~G~G~iG~~~~~~l~~~g~~~v---~~~~r~~~~~~~~~--~~~~~~~~~d~ 57 (118)
T 3ic5_A 11 VGAGKIGQMIAALLKTSSNYSV---TVADHDLAALAVLN--RMGVATKQVDA 57 (118)
T ss_dssp ECCSHHHHHHHHHHHHCSSEEE---EEEESCHHHHHHHH--TTTCEEEECCT
T ss_pred ECCCHHHHHHHHHHHhCCCceE---EEEeCCHHHHHHHH--hCCCcEEEecC
Confidence 377998888887778889 654 47899998877766 33444444444
No 341
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=20.01 E-value=1.6e+02 Score=25.12 Aligned_cols=47 Identities=17% Similarity=0.098 Sum_probs=36.1
Q ss_pred cchHHHHHHHHHHhCCcEEEeccccccccccccchHHHHHHHHhcCCcceEEE
Q 003974 476 NRQLLVFMDVIEYLKPKYVLMENVVDILKFSGGFLARYAVGRLVSMDYQTRLG 528 (782)
Q Consensus 476 ~~L~~~~~~ii~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~ 528 (782)
..|+.+++.+|..+.-++|++= .-....-+..+...++..||.++-.
T Consensus 61 kqllkemlelisklgykvflll------qdqdeneleefkrkiesqgyevrkv 107 (134)
T 2lci_A 61 KQLLKEMLELISKLGYKVFLLL------QDQDENELEEFKRKIESQGYEVRKV 107 (134)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEE------ECSCHHHHHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHHHHHhCceeEEEe------ecCchhHHHHHHHHHHhCCeeeeec
Confidence 3588999999999999999863 2233345667788889999998754
Done!