BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003975
(782 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 66.2 bits (160), Expect = 6e-11, Method: Composition-based stats.
Identities = 47/120 (39%), Positives = 67/120 (55%), Gaps = 9/120 (7%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSS 101
L V V+KA +L D SG DP+ ++LGN + T + KN NP WN++F F + +
Sbjct: 15 LQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIH-D 73
Query: 102 LLEVTVKDKDIGK-DDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIML 160
+LEVTV D+D K DF+G+V+ +PL D P Y L++K +Q KG I L
Sbjct: 74 VLEVTVFDEDGDKPPDFLGKVA-----IPLLSIRDG--QPNCYVLKNKDLEQAFKGVIYL 126
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 366 IGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVY 425
+G L++ +L A +L+ GK +D +C+ + GN ++T T+ L P WN+ +T+ +
Sbjct: 12 VGILQVKVLKAADLLAADFS-GK-SDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIK 69
Query: 426 DPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTL 463
D V+ + VFD D +GKV I L ++
Sbjct: 70 DIHDVLEVTVFD------EDGDKPPDFLGKVAIPLLSI 101
Score = 37.4 bits (85), Expect = 0.036, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 204 LRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNEEHMFVASEPFE 263
L+V V +A DL+ +D D ++LGN R+ + +++NP WN+ F +
Sbjct: 15 LQVKVLKAADLLAADFSGKSDPFCLLELGND-RLQTHTVYKNLNPEWNKVFTFPIKD-IH 72
Query: 264 DLIIVTVEDRIRPGKDEILGRELIPVRNV 292
D++ VTV D + LG+ IP+ ++
Sbjct: 73 DVLEVTVFDEDGDKPPDFLGKVAIPLLSI 101
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 74/136 (54%), Gaps = 28/136 (20%)
Query: 37 ELMHYLC---------VNVVKARNLPVMDVSGSLDPYVEVKLGNYKG------ITKHLEK 81
EL+ LC VN++KARNL MD+ G+ DPYV+V L YK T ++
Sbjct: 4 ELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLM-YKDKRVEKKKTVTKKR 62
Query: 82 NQNPVWNQIFAFS--KERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVP----- 133
N NP++N+ FAF E+L+ + + +TV DKD + ++D +G++ L P V
Sbjct: 63 NLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDM 122
Query: 134 ---PDSPLAPQWYRLE 146
P P+A QW++L+
Sbjct: 123 IARPRQPVA-QWHQLK 137
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 58/117 (49%), Gaps = 8/117 (6%)
Query: 197 FSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQL----GNQLRVTRPSHVRSVNPVWNE 252
++P + V + +A++L D G D V++ L + + R++NP++NE
Sbjct: 11 YNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNE 70
Query: 253 EHMF-VASEPF-EDLIIVTVEDRIRPGKDEILGRELIPVRNVPQ--RHETTKLPDPR 305
F + +E E II+TV D+ + +++++G+ + ++ P +H + PR
Sbjct: 71 SFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPR 127
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 110/280 (39%), Gaps = 55/280 (19%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL---GNYKGITKHLEKNQNPVWNQIFAFS--KE 96
L V +++A LP +D+ G+ DPYV+V L K TK K NPV+N+ F F
Sbjct: 21 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 80
Query: 97 RLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTK 155
L L + V D D K D +G +VP+ + +W L+
Sbjct: 81 ELAGKTLVMAVYDFDRFSKHDIIGEF-----KVPMNTVDFGHVTEEWRDLQ--------- 126
Query: 156 GEIMLAVWMGTQADESFAEAWHSDAHNISQKNLANTRSKVYFSPKLYYLRVFVFEAQDLV 215
A Q+ L + + + P L V + EA++L
Sbjct: 127 -----------------------SAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLK 163
Query: 216 PSDKGRAPDACVRIQLGNQ----LRVTRPSHVRSVNPVWNEEHMFVASEPFEDL----II 267
D G D V+I L + ++NP +NE F PFE + ++
Sbjct: 164 KMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEV--PFEQIQKVQVV 221
Query: 268 VTVEDRIRPGKDEILGRELIPVRNVPQ--RHETTKLPDPR 305
VTV D + GK++ +G+ + + RH + L +PR
Sbjct: 222 VTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPR 261
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 17/121 (14%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQ-----NPVWNQIFAFSK- 95
L V +++A+NL MDV G DPYV++ L K + NP +N+ F+F
Sbjct: 152 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 211
Query: 96 -ERLQSSLLEVTVKDKD-IGKDDFVGR--VSLDLSQVPLR------VPPDSPLAPQWYRL 145
E++Q + VTV D D IGK+D +G+ V + + LR P P+A QW+ L
Sbjct: 212 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA-QWHTL 270
Query: 146 E 146
+
Sbjct: 271 Q 271
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 66/127 (51%), Gaps = 27/127 (21%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL--------------GNYKGITKHLEKNQNPVW 87
L +++++ARNL D +G DP+V+V L YK TK+++K+ NP W
Sbjct: 20 LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEW 79
Query: 88 NQIFAF---SKERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPL--APQ 141
NQ + S E+L LEVTV D D +DF+G V +DLS S L P+
Sbjct: 80 NQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST-------SHLDNTPR 132
Query: 142 WYRLEDK 148
WY L+++
Sbjct: 133 WYPLKEQ 139
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL---GNYKGITKHLEKNQNPVWNQIF---AFSK 95
L V ++KA+ LP D SG+ DP+V++ L +K TK KN NP WN+ F F
Sbjct: 28 LTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPY 87
Query: 96 ERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPL 130
E++ +L + V D D ++D +G VS+ L++V L
Sbjct: 88 EKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDL 123
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Query: 185 QKNLANTRSKVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQL--GNQLRVTRPSH 242
++NL + V ++ + L V + +AQ+L D D V+I L + ++
Sbjct: 9 RENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVK 68
Query: 243 VRSVNPVWNEEHMFVASEPFEDLI----IVTVEDRIRPGKDEILGRELIPVRNV 292
+++NP WNE +F P+E ++ + V D R +++ +G IP+ V
Sbjct: 69 RKNLNPHWNETFLFEGF-PYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKV 121
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 24/135 (17%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAF----SKER 97
+ + VV A+ L D +GS DPYV V++G K TK + N NPVW + F F S +R
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 78
Query: 98 LQSSLLEVTVKDKDIG----------KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLED 147
++ +L+ +D DI DDF+G+ +++ + S WY L+
Sbjct: 79 IKVRVLD---EDDDIKSRVKQRFKRESDDFLGQTIIEVRTL-------SGEMDVWYNLDK 128
Query: 148 KKGDQTTKGEIMLAV 162
+ G I L +
Sbjct: 129 RTDKSAVSGAIRLHI 143
Score = 37.7 bits (86), Expect = 0.024, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 19/128 (14%)
Query: 204 LRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNEEHMF------- 256
+ + V AQ L DK + D V +Q+G + T+ + ++NPVW E F
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIY-GNLNPVWEENFHFECHNSSD 77
Query: 257 ---VASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKPS 313
V +D I V+ R + D+ LG+ +I VR + + W+NL K +
Sbjct: 78 RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDV-------WYNLDKRT 130
Query: 314 -LSAEEGA 320
SA GA
Sbjct: 131 DKSAVSGA 138
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 380 MQMKSKDGKLTDAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFD 437
+Q K K G +D Y + G RT+TI L P W E + ++ ++ I + V D
Sbjct: 29 LQAKDKTGS-SDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLD 85
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 106/254 (41%), Gaps = 48/254 (18%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL---GNYKGITKHLEKNQNPVWNQIFAFSK--E 96
L V +++A +LP D +G DPYV++ L K TK K NP++N+ F FS
Sbjct: 22 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 81
Query: 97 RLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTK 155
L L +V D D + D +G+V LD PPD PL W + + ++
Sbjct: 82 ELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL---WRDILEGGSEKADL 138
Query: 156 GEIMLAVWMGTQADESFAEAWHSDAHNISQKNLANTRSKVYFSPKLYYLRVFVFEAQDLV 215
GE+ ++ + P L V + +A +L
Sbjct: 139 GELNFSLC---------------------------------YLPTAGLLTVTIIKASNLK 165
Query: 216 PSDKGRAPDACVRIQL---GNQLRVTRPS-HVRSVNPVWNEEHMF-VASEPFEDL-IIVT 269
D D V+ L G +L+ + S ++NP +NE +F VA E E++ + +
Sbjct: 166 AMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIA 225
Query: 270 VEDRIRPGKDEILG 283
V D G +E++G
Sbjct: 226 VVDYDCIGHNEVIG 239
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 20/112 (17%)
Query: 25 GGDKTASTYDLVELMHYLC---------VNVVKARNLPVMDVSGSLDPYVEVKLGN---- 71
GG + A DL EL LC V ++KA NL MD++G DPYV+ L +
Sbjct: 131 GGSEKA---DLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRR 187
Query: 72 YKGITKHLEKNQ-NPVWNQ--IFAFSKERLQSSLLEVTVKDKD-IGKDDFVG 119
K ++KN NP +N+ +F + E +++ L + V D D IG ++ +G
Sbjct: 188 LKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIG 239
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 106/254 (41%), Gaps = 48/254 (18%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL---GNYKGITKHLEKNQNPVWNQIFAFSK--E 96
L V +++A +LP D +G DPYV++ L K TK K NP++N+ F FS
Sbjct: 23 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 82
Query: 97 RLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTK 155
L L +V D D + D +G+V LD PPD PL W + + ++
Sbjct: 83 ELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL---WRDILEGGSEKADL 139
Query: 156 GEIMLAVWMGTQADESFAEAWHSDAHNISQKNLANTRSKVYFSPKLYYLRVFVFEAQDLV 215
GE+ ++ + P L V + +A +L
Sbjct: 140 GELNFSLC---------------------------------YLPTAGLLTVTIIKASNLK 166
Query: 216 PSDKGRAPDACVRIQL---GNQLRVTRPS-HVRSVNPVWNEEHMF-VASEPFEDL-IIVT 269
D D V+ L G +L+ + S ++NP +NE +F VA E E++ + +
Sbjct: 167 AMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIA 226
Query: 270 VEDRIRPGKDEILG 283
V D G +E++G
Sbjct: 227 VVDYDCIGHNEVIG 240
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 20/112 (17%)
Query: 25 GGDKTASTYDLVELMHYLC---------VNVVKARNLPVMDVSGSLDPYVEVKLGN---- 71
GG + A DL EL LC V ++KA NL MD++G DPYV+ L +
Sbjct: 132 GGSEKA---DLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRR 188
Query: 72 YKGITKHLEKNQ-NPVWNQ--IFAFSKERLQSSLLEVTVKDKD-IGKDDFVG 119
K ++KN NP +N+ +F + E +++ L + V D D IG ++ +G
Sbjct: 189 LKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIG 240
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 13/111 (11%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGITKHLEKNQNPVWNQIFAFS-K 95
+ V V +ARNL MD +G DPYV++KL K T+ ++ NPVWN+ F F+ K
Sbjct: 22 IHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLK 81
Query: 96 ERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRL 145
L V V D D ++DF+G +S +S++ L+ P D WY+L
Sbjct: 82 PGDVERRLSVEVWDWDRTSRNDFMGAMSFGVSEL-LKAPVDG-----WYKL 126
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 15/127 (11%)
Query: 198 SPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSV----NPVWNEE 253
+P + V V EA++L+P D D V+++L R R+V NPVWNE
Sbjct: 16 APTADEIHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNET 75
Query: 254 HMF-VASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKP 312
+F + E + V V D R +++ +G V E K P W+ L
Sbjct: 76 FVFNLKPGDVERRLSVEVWDWDRTSRNDFMGAMSFGV------SELLKAPVDGWYKL--- 126
Query: 313 SLSAEEG 319
L+ EEG
Sbjct: 127 -LNQEEG 132
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 9/96 (9%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGITKHLEKNQNPVWNQIFAF--- 93
L +++A+ L MD +G DPYV++ L + K TK L +NPVWN+ +
Sbjct: 29 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 88
Query: 94 SKERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQV 128
++E +Q L ++V D+D G ++F+G L ++
Sbjct: 89 TEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKL 124
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 9/96 (9%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGITKHLEKNQNPVWNQIFAF--- 93
L +++A+ L MD +G DPYV++ L + K TK L +NPVWN+ +
Sbjct: 31 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 90
Query: 94 SKERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQV 128
++E +Q L ++V D+D G ++F+G L ++
Sbjct: 91 TEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKL 126
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 58/111 (52%), Gaps = 13/111 (11%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGITKHLEKNQNPVWNQIFAFS-K 95
L V V A+NL MD +G DPYV++KL K TK + NP WN+ F F K
Sbjct: 19 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 78
Query: 96 ERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRL 145
+ L V + D D ++DF+G +S +S++ +++P A WY+L
Sbjct: 79 PSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSEL-MKMP-----ASGWYKL 123
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 369 LELGILSAKNLMQMKSKDGKLTDAYCVAKY-----GNKWIRTRTILDTLAPRWNEQYT 421
L + + AKNL+ M L+D Y K +T+TI TL P+WNE +T
Sbjct: 19 LHVTVRDAKNLIPMDP--NGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFT 74
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 58/111 (52%), Gaps = 13/111 (11%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGITKHLEKNQNPVWNQIFAFS-K 95
L V V A+NL MD +G DPYV++KL K TK + NP WN+ F F K
Sbjct: 18 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 77
Query: 96 ERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRL 145
+ L V + D D ++DF+G +S +S++ +++P A WY+L
Sbjct: 78 PSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSEL-MKMP-----ASGWYKL 122
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 369 LELGILSAKNLMQMKSKDGKLTDAYCVAKY-----GNKWIRTRTILDTLAPRWNEQYT 421
L + + AKNL+ M L+D Y K +T+TI TL P+WNE +T
Sbjct: 18 LHVTVRDAKNLIPMDP--NGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFT 73
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGITKHLEKNQNPVWNQIFAFS-K 95
L V V A+NL MD +G DPYV++KL K TK ++ + NP WN+ F F K
Sbjct: 174 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLK 233
Query: 96 ERLQSSLLEVTVKDKDI-GKDDFVGRVSLDLSQV 128
E + L V + D D+ ++DF+G +S +S++
Sbjct: 234 ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISEL 267
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGITKHLEKNQNPVWNQIFAFS-K 95
L V V A+NL MD +G DPYV++KL K TK ++ + NP WN+ F F K
Sbjct: 33 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLK 92
Query: 96 ERLQSSLLEVTVKDKDI-GKDDFVGRVSLDLSQV 128
E + L V + D D+ ++DF+G +S +S++
Sbjct: 93 ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISEL 126
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSS 101
L V+V++A L +G +PY E+ +G+ T+ ++ NP WN F + L
Sbjct: 389 LMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQD 448
Query: 102 LLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLA 139
+L +T+ D+D DDF+GR + ++++ P+
Sbjct: 449 VLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMT 487
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
Query: 204 LRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNEEHMFVASEPFE 263
L V V EA +L + I +G+Q TR ++NP WN F + ++
Sbjct: 389 LMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQ-DTLNPKWNFNCQFFIKDLYQ 447
Query: 264 DLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHK 311
D++ +T+ DR + D+ LGR IPV + E +K P R LH+
Sbjct: 448 DVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQE-SKGPMTRRLLLHE 494
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 358 SKSLRKGSIGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWIRTRTILDTLAPRWN 417
++S + IG L + ++ A L K +GK ++ YC G++ TRTI DTL P+WN
Sbjct: 378 ARSQKTSGIGRLMVHVIEATELKACKP-NGK-SNPYCEISMGSQSYTTRTIQDTLNPKWN 435
Query: 418 ---EQYTWDVYDPCTVITIGVFD 437
+ + D+Y V+ + +FD
Sbjct: 436 FNCQFFIKDLYQD--VLCLTLFD 456
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 17/121 (14%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQ-----NPVWNQIFAFSK- 95
L V +++A+NL MDV G DPYV++ L K + NP +N+ F+F
Sbjct: 27 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 86
Query: 96 -ERLQSSLLEVTVKDKD-IGKDDFVGR--VSLDLSQVPLR------VPPDSPLAPQWYRL 145
E++Q + VTV D D IGK+D +G+ V + + LR P P+A QW+ L
Sbjct: 87 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA-QWHTL 145
Query: 146 E 146
+
Sbjct: 146 Q 146
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 17/121 (14%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQ-----NPVWNQIFAFSK- 95
L V +++A+NL MDV G DPYV++ L K + NP +N+ F+F
Sbjct: 20 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 79
Query: 96 -ERLQSSLLEVTVKDKD-IGKDDFVGR--VSLDLSQVPLR------VPPDSPLAPQWYRL 145
E++Q + VTV D D IGK+D +G+ V + + LR P P+A QW+ L
Sbjct: 80 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA-QWHTL 138
Query: 146 E 146
+
Sbjct: 139 Q 139
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 17/121 (14%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQ-----NPVWNQIFAFSK- 95
L V +++A+NL MDV G DPYV++ L K + NP +N+ F+F
Sbjct: 19 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 78
Query: 96 -ERLQSSLLEVTVKDKD-IGKDDFVGR--VSLDLSQVPLR------VPPDSPLAPQWYRL 145
E++Q + VTV D D IGK+D +G+ V + + LR P P+A QW+ L
Sbjct: 79 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA-QWHTL 137
Query: 146 E 146
+
Sbjct: 138 Q 138
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL---GNYKGI----TKHLEKNQNPVWNQIFAFS 94
L V VV +L D+ G+ DPYV++ L + + TK ++K NP WN+ F F
Sbjct: 23 LRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFR 82
Query: 95 KERLQSSLLEVTVKDKDIGKDDFVGRVSLDLSQVPLRVP 133
LL + + +DDF+G+V + LS +P P
Sbjct: 83 VNPSNHRLLFEVFDENRLTRDDFLGQVDVPLSHLPTEDP 121
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 204 LRVFVFEAQDLVPSDKGRAPDACVRIQL-----GNQLRVTRPSHVR-SVNPVWNEEHMFV 257
LRV V DL D A D V++ L +L + + ++ ++NP WNEE F
Sbjct: 23 LRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFR 82
Query: 258 ASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLP 302
+ P ++ V D R +D+ LG+ +P+ ++P T + P
Sbjct: 83 VN-PSNHRLLFEVFDENRLTRDDFLGQVDVPLSHLPTEDPTMERP 126
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 403 IRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLST 462
++T+TI TL P+WNE++ + V + VFD + +D +G+V + LS
Sbjct: 62 VQTKTIKKTLNPKWNEEFYFRVNPSNHRLLFEVFDENRL------TRDDFLGQVDVPLSH 115
Query: 463 LETD 466
L T+
Sbjct: 116 LPTE 119
>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium
pdb|1W16|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Absence Of Calcium
Length = 153
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 55/90 (61%), Gaps = 8/90 (8%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKG-ITK---HLEK-NQNPVWNQIFAFS-- 94
L V V+KAR+LP DVSG DPYV+V L + K I+K H++K N V+N++F F
Sbjct: 32 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIP 91
Query: 95 KERLQSSLLEVTVKDKDIG-KDDFVGRVSL 123
E L+ +E V D + G +++ +GR+ L
Sbjct: 92 CESLEEISVEFLVLDSERGSRNEVIGRLVL 121
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 44 VNVVKARNLPVMDVSGSLDPYVEVKLGN-YKGI-----TKHLEKNQNPVWNQIFAFSKER 97
V V+ L D+ G+ DPYV V L + G+ TK ++K+ NP WN+ F
Sbjct: 24 VRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHP 83
Query: 98 LQSSLLEVTVKDKDIGKDDFVGRVSLDLSQVPLRVP 133
Q LL + + +DDF+G+V + L +P P
Sbjct: 84 QQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENP 119
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Query: 204 LRVFVFEAQDLVPSDKGRAPDACVRIQL-----GNQLRVTRPSHVRSVNPVWNEEHMFVA 258
+RV V L D A D VR+ L G V + +S+NP WNEE +F
Sbjct: 22 VRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRV 81
Query: 259 SEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWF 307
P + ++ V D R +D+ LG+ +P+ +P E +L P F
Sbjct: 82 -HPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPT--ENPRLERPYTF 127
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 403 IRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLST 462
++T+TI +L P+WNE+ + V+ + VFD + +D +G+V + L
Sbjct: 60 VQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDENRL------TRDDFLGQVDVPLYP 113
Query: 463 LETD 466
L T+
Sbjct: 114 LPTE 117
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 56 DVSGSLDPYVEVKLG---NYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDI 112
D+ + DPYVE+ + + + T+H + NPVWN+ F F + Q ++LE+T+ D +
Sbjct: 37 DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 96
Query: 113 GKDDFVGRVSLDLSQVPLRVPPDSPL 138
D+ +G + +S + + + P
Sbjct: 97 VMDETLGTATFTVSSMKVGEKKEVPF 122
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 13/111 (11%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGITKHLEKNQNPVWNQIFAFS-K 95
L V V A+NL D +G DPYV++KL K TK + NP WN+ F F K
Sbjct: 20 LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 79
Query: 96 ERLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRL 145
+ L V + D D ++DF G +S +S++ + P A WY+L
Sbjct: 80 PSDKDRRLSVEIWDWDRTTRNDFXGSLSFGVSEL-XKXP-----ASGWYKL 124
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 40 HYLCVNVVKARNL---PVMDVSGSLDPYVEVKLG---NYKGITKHLEKNQNPVWNQIFAF 93
H V V++A + D+ + DPYVE+ + + + T+H + NPVWN+ F F
Sbjct: 18 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 77
Query: 94 SKERLQSSLLEVTVKDKDIGKDDFVGRVSLDLSQV 128
+ Q ++LE+T+ D + D+ +G + +S +
Sbjct: 78 ILDPNQENVLEITLMDANYVMDETLGTATFTVSSM 112
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 17/118 (14%)
Query: 40 HYLCVNVVKARNLPVMDVSGSLDPYVEV-----KLGNYKGITKHLEKNQNPVWNQIFAFS 94
H L V ++ A++LP + +PYV++ + K TK ++K P WNQ F +S
Sbjct: 21 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 80
Query: 95 ---KERLQSSLLEVTVKDKDIGKD---DFVGRVSLDLSQVPLRVPPDSPLAPQWYRLE 146
+ + +LE+T+ D+ ++ +F+G + ++L L P WY+L+
Sbjct: 81 PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD------EPHWYKLQ 132
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 17/118 (14%)
Query: 40 HYLCVNVVKARNLPVMDVSGSLDPYVEV-----KLGNYKGITKHLEKNQNPVWNQIFAFS 94
H L V ++ A++LP + +PYV++ + K TK ++K P WNQ F +S
Sbjct: 18 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 77
Query: 95 ---KERLQSSLLEVTVKDKDIGKD---DFVGRVSLDLSQVPLRVPPDSPLAPQWYRLE 146
+ + +LE+T+ D+ ++ +F+G + ++L L D P WY+L+
Sbjct: 78 PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALL----DD--EPHWYKLQ 129
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Query: 40 HYLCVNVVKARNL---PVMDVSGSLDPYVEVKLG---NYKGITKHLEKNQNPVWNQIFAF 93
H V V++A + D+ + DPYVE+ + + + T+H + NPVWN+ F F
Sbjct: 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62
Query: 94 SKERLQSSLLEVTVKDKDIGKDDFVGRVSLDLSQVPLRVPPDSPL 138
+ Q ++LE+T+ D + D+ +G + +S + + + P
Sbjct: 63 ILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPF 107
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 11/111 (9%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL---GNYKGITKHLEKNQNPVWNQIFAFS--KE 96
L V +++A LP +D+ G+ DPYV+V L K TK K NPV+N+ F F
Sbjct: 44 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 103
Query: 97 RLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLE 146
L L + V D D K D +G +VP+ + +W L+
Sbjct: 104 ELGGKTLVMAVYDFDRFSKHDIIGEF-----KVPMNTVDFGHVTEEWRDLQ 149
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 204 LRVFVFEAQDLVPSDKGRAPDACVRIQL--GNQLRVTRPSHVRSVNPVWNEEHMFVASEP 261
L V + +A +L D G D V++ L + + H +++NPV+NE+ F P
Sbjct: 44 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV--P 101
Query: 262 FEDL----IIVTVEDRIRPGKDEILGRELIPVRNVPQRHET 298
+ +L +++ V D R K +I+G +P+ V H T
Sbjct: 102 YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVT 142
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL---GNYKGITKHLEKNQNPVWNQIFAFS--KE 96
L V +++A LP +D+ G+ DPYV+V L K TK K NPV+N+ F F
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 97 RLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQV 128
L L + V D D K D +G + ++ V
Sbjct: 96 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 128
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 204 LRVFVFEAQDLVPSDKGRAPDACVRIQL--GNQLRVTRPSHVRSVNPVWNEEHMFVASEP 261
L V + +A +L D G D V++ L + + H +++NPV+NE+ F P
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV--P 93
Query: 262 FEDL----IIVTVEDRIRPGKDEILGRELIPVRNVPQRHET 298
+ +L +++ V D R K +I+G +P+ V H T
Sbjct: 94 YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVT 134
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL---GNYKGITKHLEKNQNPVWNQIFAFS--KE 96
L V +++A LP +D+ G+ DPYV+V L K TK K NPV+N+ F F
Sbjct: 19 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 78
Query: 97 RLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQV 128
L L + V D D K D +G + ++ V
Sbjct: 79 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 111
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 204 LRVFVFEAQDLVPSDKGRAPDACVRIQL--GNQLRVTRPSHVRSVNPVWNEEHMFVASEP 261
L V + +A +L D G D V++ L + + H +++NPV+NE+ F P
Sbjct: 19 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV--P 76
Query: 262 FEDL----IIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPD 303
+ +L +++ V D R K +I+G +P+ V H T + D
Sbjct: 77 YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRD 122
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL---GNYKGITKHLEKNQNPVWNQIFAFS--KE 96
L V +++A LP +D+ G+ DPYV+V L K TK K NPV+N+ F F
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 97 RLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQV 128
L L + V D D K D +G + ++ V
Sbjct: 96 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 128
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 204 LRVFVFEAQDLVPSDKGRAPDACVRIQL--GNQLRVTRPSHVRSVNPVWNEEHMFVASEP 261
L V + +A +L D G D V++ L + + H +++NPV+NE+ F P
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV--P 93
Query: 262 FEDL----IIVTVEDRIRPGKDEILGRELIPVRNVPQRHET 298
+ +L +++ V D R K +I+G +P+ V H T
Sbjct: 94 YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVT 134
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 13/116 (11%)
Query: 24 RGGDKTASTYDLVELMHY-----LCVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYK 73
R GD LV LM+ L V +++ +L MD +G DP+V++ L K
Sbjct: 16 RIGDIEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAK 75
Query: 74 GITKHLEKNQNPVWNQIFAFSKER--LQSSLLEVTVKDKDIGK-DDFVGRVSLDLS 126
T+ +K NP +N+ F + + L L+++V D DIGK +D++G L +S
Sbjct: 76 HKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGIS 131
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 44 VNVVKARNLPVMDVSGSLDPYVEVKLGN-YKGI-----TKHLEKNQNPVWNQIFAFSKER 97
V V+ L D+ G+ DPYV V L + GI TK ++K+ NP WN+ F
Sbjct: 12 VKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLP 71
Query: 98 LQSSLLEVTVKDKDIGKDDFVGRVSLDLSQVPLRVP 133
+ +L + + +DDF+G+V + L +P P
Sbjct: 72 QRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENP 107
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 6/104 (5%)
Query: 204 LRVFVFEAQDLVPSDKGRAPDACVRIQL-----GNQLRVTRPSHVRSVNPVWNEEHMFVA 258
+RV V L D A D VR+ L G V + +S+NP WNEE +F
Sbjct: 10 VRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRV 69
Query: 259 SEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLP 302
P I+ V D R +D+ LG+ +P+ +P + + P
Sbjct: 70 L-PQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERP 112
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 403 IRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLST 462
++T+TI +L P+WNE+ + V I VFD + +D +G+V + L
Sbjct: 48 VQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDENRL------TRDDFLGQVDVPLYP 101
Query: 463 LETD 466
L T+
Sbjct: 102 LPTE 105
>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A
Janus-Faced Domain
Length = 140
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 13/105 (12%)
Query: 35 LVELMHY-----LCVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGITKHLEKNQN 84
LV LM+ L V +++ +L MD +G DP+V++ L K T+ +K N
Sbjct: 5 LVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLN 64
Query: 85 PVWNQIFAFSKER--LQSSLLEVTVKDKDIGK-DDFVGRVSLDLS 126
P +N+ F + + L L+++V D DIGK +D++G L +S
Sbjct: 65 PEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGIS 109
>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Iv From Human Fetal Brain (Kiaa1342)
Length = 138
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Query: 44 VNVVKARNLPVMD-VSGSLDPYVEVKL---GNYKGITKHLEKNQNPVWNQIFAF---SKE 96
VN+ +AR LP MD S + DPY+++ + +K T+ L K +P +++ F F
Sbjct: 26 VNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYT 85
Query: 97 RLQSSLLEVTVKDKD-IGKDDFVGRVSLDLSQVPL 130
++Q L T+ D +DD +G V + LS + L
Sbjct: 86 QIQELALHFTILSFDRFSRDDIIGEVLIPLSGIEL 120
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 10/123 (8%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLE-KNQNPVWNQIFAFSKERLQS 100
L V +V A+ L D ++DPYV++ + E P WN+ F F+ +
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE-GT 70
Query: 101 SLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIM 159
+ L+ + DKD+G +DD VG ++ L V + + + P Y + D+ KGEI
Sbjct: 71 TELKAKIFDKDVGTEDDAVGEATIPLEPVFV----EGSIPPTAYNVVK---DEEYKGEIW 123
Query: 160 LAV 162
+A+
Sbjct: 124 VAL 126
>pdb|2DMH|A Chain A, Solution Structure Of The First C2 Domain Of Human
Myoferlin
Length = 140
Score = 35.8 bits (81), Expect = 0.085, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQ-- 99
L V V A N+P G DP V V + K TK ++ NPVWN+I F +
Sbjct: 9 LRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLD 67
Query: 100 -SSLLEVTVKD-KDIGKDDFVGRVSLDLSQV 128
SS L + VKD + IG++ +G ++ L +
Sbjct: 68 FSSSLGIIVKDFETIGQNKLIGTATVALKDL 98
>pdb|4B87|A Chain A, Crystal Structure Of Human Dna Cross-Link Repair 1a
Length = 367
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 43 CVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAF 93
C+N+ + +L D+ SL + + N+KG+ HL+K +NQI AF
Sbjct: 237 CLNIPEINSLITTDMCSSLVHLLPMMQINFKGLQSHLKKCGGK-YNQILAF 286
>pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAS|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAT|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
Length = 622
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 7/105 (6%)
Query: 204 LRVFVFEAQDLVPSDKGRA----PDACVRIQLGNQLRVTRPSHV---RSVNPVWNEEHMF 256
LRV + Q L +K + P V I + +R + V NP W+ E F
Sbjct: 497 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 556
Query: 257 VASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKL 301
+ P L+ VED K++ +G+ IP ++ Q + L
Sbjct: 557 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHL 601
>pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJG|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJH|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJH|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJI|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJI|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJW|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJW|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJX|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJY|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJY|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|1DJZ|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|2ISD|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|2ISD|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Length = 624
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 7/105 (6%)
Query: 204 LRVFVFEAQDLVPSDKGRA----PDACVRIQLGNQLRVTRPSHV---RSVNPVWNEEHMF 256
LRV + Q L +K + P V I + +R + V NP W+ E F
Sbjct: 499 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 558
Query: 257 VASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKL 301
+ P L+ VED K++ +G+ IP ++ Q + L
Sbjct: 559 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHL 603
>pdb|3H3X|Q Chain Q, Structure Of The V74m Large Subunit Mutant Of Ni-Fe
Hydrogenase In An Oxidized State
pdb|3H3X|R Chain R, Structure Of The V74m Large Subunit Mutant Of Ni-Fe
Hydrogenase In An Oxidized State
pdb|3H3X|S Chain S, Structure Of The V74m Large Subunit Mutant Of Ni-Fe
Hydrogenase In An Oxidized State
Length = 549
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 34 DLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKL----GNYKGITKHLEKNQNPVWNQ 89
DL+ HYL ++ + M + G +P+ + + NY+G+TK N + +
Sbjct: 198 DLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGCSNYQGLTKDPLANYLALSKE 257
Query: 90 IFAFSKERLQSSLLEVTVKDKDIG 113
+ F E LL V KD G
Sbjct: 258 VCQFVNECYIPDLLAVAGFYKDWG 281
>pdb|3CUS|Q Chain Q, Structure Of A Double IlePHE MUTANT OF NI-Fe Hydrogenase
Refined At 2.2 Angstrom Resolution
pdb|3CUS|R Chain R, Structure Of A Double IlePHE MUTANT OF NI-Fe Hydrogenase
Refined At 2.2 Angstrom Resolution
pdb|3CUS|S Chain S, Structure Of A Double IlePHE MUTANT OF NI-Fe Hydrogenase
Refined At 2.2 Angstrom Resolution
Length = 549
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 34 DLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKL----GNYKGITKHLEKNQNPVWNQ 89
DL+ HYL ++ + M + G +P+ + + NY+G+TK N + +
Sbjct: 198 DLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGCSNYQGLTKDPLANYLALSKE 257
Query: 90 IFAFSKERLQSSLLEVTVKDKDIG 113
+ F E LL V KD G
Sbjct: 258 VCQFVNECYIPDLLAVAGFYKDWG 281
>pdb|3CUR|H Chain H, Structure Of A Double Methionine Mutant Of Ni-Fe
Hydrogenase
pdb|3CUR|I Chain I, Structure Of A Double Methionine Mutant Of Ni-Fe
Hydrogenase
pdb|3CUR|J Chain J, Structure Of A Double Methionine Mutant Of Ni-Fe
Hydrogenase
Length = 549
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 34 DLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKL----GNYKGITKHLEKNQNPVWNQ 89
DL+ HYL ++ + M + G +P+ + + NY+G+TK N + +
Sbjct: 198 DLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGCSNYQGLTKDPLANYLALSKE 257
Query: 90 IFAFSKERLQSSLLEVTVKDKDIG 113
+ F E LL V KD G
Sbjct: 258 VCQFVNECYIPDLLAVAGFYKDWG 281
>pdb|1L9U|D Chain D, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9U|M Chain M, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9Z|D Chain D, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction
Promoter Dna Complex At 6.5 A Resolution
pdb|1YNJ|D Chain D, Taq Rna Polymerase-Sorangicin Complex
pdb|1YNJ|J Chain J, Taq Rna Polymerase-Sorangicin Complex
pdb|1YNN|D Chain D, Taq Rna Polymerase-rifampicin Complex
pdb|1YNN|J Chain J, Taq Rna Polymerase-rifampicin Complex
Length = 1524
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 10/42 (23%)
Query: 261 PFEDLIIVTVEDRIRPG---------KDEILGR-ELIPVRNV 292
PFED + VT DR+ PG K EI GR E+ VRNV
Sbjct: 402 PFEDDVEVTTGDRVAPGDVLADGGKVKSEIYGRVEVDLVRNV 443
>pdb|3NSJ|A Chain A, The X-Ray Crystal Structure Of Lymphocyte Perforin
Length = 540
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 41 YLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQS 100
+L V+ +A +L D + + D Y++V G + T + N NP W F L +
Sbjct: 395 HLVVSNFRAEHL-WGDYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLST 453
Query: 101 SL-LEVTVKDKDIGKDD 116
L V V D D G DD
Sbjct: 454 GGPLRVQVWDADYGWDD 470
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,507,040
Number of Sequences: 62578
Number of extensions: 976479
Number of successful extensions: 1778
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1671
Number of HSP's gapped (non-prelim): 99
length of query: 782
length of database: 14,973,337
effective HSP length: 106
effective length of query: 676
effective length of database: 8,340,069
effective search space: 5637886644
effective search space used: 5637886644
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)