Query 003975
Match_columns 782
No_of_seqs 465 out of 3263
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 15:19:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003975.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003975hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08372 PRT_C: Plant phosphor 100.0 5.2E-44 1.1E-48 326.4 11.3 156 617-782 1-156 (156)
2 KOG1028 Ca2+-dependent phospho 100.0 2E-28 4.3E-33 267.3 26.1 227 24-291 153-393 (421)
3 COG5038 Ca2+-dependent lipid-b 100.0 1.2E-26 2.5E-31 263.5 34.9 398 35-498 431-842 (1227)
4 KOG1028 Ca2+-dependent phospho 99.9 8.9E-26 1.9E-30 246.5 26.6 214 201-462 166-393 (421)
5 KOG1326 Membrane-associated pr 99.9 5.5E-26 1.2E-30 252.9 11.0 315 199-553 610-1051(1105)
6 COG5038 Ca2+-dependent lipid-b 99.9 4.9E-23 1.1E-27 234.3 31.2 412 38-495 577-1160(1227)
7 KOG2059 Ras GTPase-activating 99.9 2.6E-22 5.6E-27 216.7 17.4 251 40-338 5-276 (800)
8 cd04019 C2C_MCTP_PRT_plant C2 99.9 5.1E-22 1.1E-26 186.9 16.9 149 204-356 2-150 (150)
9 KOG2059 Ras GTPase-activating 99.9 5E-22 1.1E-26 214.5 16.6 251 203-501 6-281 (800)
10 cd08379 C2D_MCTP_PRT_plant C2 99.9 2E-21 4.3E-26 176.2 15.4 121 368-491 1-125 (126)
11 cd04016 C2_Tollip C2 domain pr 99.9 2.6E-21 5.7E-26 174.3 14.5 117 367-495 2-121 (121)
12 cd04016 C2_Tollip C2 domain pr 99.9 1.2E-20 2.6E-25 170.0 15.7 117 40-164 2-121 (121)
13 cd08378 C2B_MCTP_PRT_plant C2 99.8 1.3E-20 2.9E-25 171.3 14.7 121 41-166 1-121 (121)
14 cd08682 C2_Rab11-FIP_classI C2 99.8 3.4E-20 7.4E-25 170.5 13.5 116 369-493 1-125 (126)
15 cd08682 C2_Rab11-FIP_classI C2 99.8 5.9E-20 1.3E-24 169.0 14.4 118 42-162 1-125 (126)
16 cd04015 C2_plant_PLD C2 domain 99.8 2E-19 4.2E-24 171.2 15.7 122 367-495 7-157 (158)
17 cd04042 C2A_MCTP_PRT C2 domain 99.8 3.1E-19 6.7E-24 163.0 15.4 118 368-496 1-120 (121)
18 PF11696 DUF3292: Protein of u 99.8 4.3E-20 9.2E-25 202.2 11.1 209 559-773 83-366 (642)
19 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 4E-19 8.6E-24 161.6 14.7 118 369-495 2-121 (121)
20 cd08379 C2D_MCTP_PRT_plant C2 99.8 4E-19 8.6E-24 161.2 14.3 113 42-160 2-125 (126)
21 cd04022 C2A_MCTP_PRT_plant C2 99.8 4.2E-19 9.1E-24 163.5 14.8 120 42-165 2-126 (127)
22 cd04019 C2C_MCTP_PRT_plant C2 99.8 6E-19 1.3E-23 166.0 15.7 125 41-166 1-133 (150)
23 cd08375 C2_Intersectin C2 doma 99.8 7.4E-19 1.6E-23 163.0 15.8 124 36-164 11-135 (136)
24 KOG1030 Predicted Ca2+-depende 99.8 1.3E-19 2.9E-24 165.6 10.1 116 365-493 4-120 (168)
25 cd04042 C2A_MCTP_PRT C2 domain 99.8 8.9E-19 1.9E-23 159.9 15.5 118 41-165 1-120 (121)
26 cd08375 C2_Intersectin C2 doma 99.8 1.1E-18 2.3E-23 161.9 15.7 118 363-495 11-135 (136)
27 cd08681 C2_fungal_Inn1p-like C 99.8 6.1E-19 1.3E-23 160.4 13.7 117 40-164 1-118 (118)
28 cd08381 C2B_PI3K_class_II C2 d 99.8 6.3E-19 1.4E-23 160.5 13.3 111 25-145 2-121 (122)
29 KOG1030 Predicted Ca2+-depende 99.8 2.9E-19 6.3E-24 163.4 10.6 94 37-131 3-97 (168)
30 cd08400 C2_Ras_p21A1 C2 domain 99.8 2.6E-18 5.7E-23 157.6 16.1 119 367-497 4-124 (126)
31 cd08681 C2_fungal_Inn1p-like C 99.8 8.6E-19 1.9E-23 159.4 12.1 115 367-495 1-118 (118)
32 cd08376 C2B_MCTP_PRT C2 domain 99.8 3E-18 6.5E-23 155.3 15.0 113 41-164 1-114 (116)
33 cd08376 C2B_MCTP_PRT C2 domain 99.8 3.5E-18 7.5E-23 154.9 15.3 112 368-495 1-114 (116)
34 cd08677 C2A_Synaptotagmin-13 C 99.8 2.1E-18 4.6E-23 152.5 12.5 108 28-145 4-118 (118)
35 cd04024 C2A_Synaptotagmin-like 99.8 4.9E-18 1.1E-22 156.9 15.3 122 40-163 1-127 (128)
36 cd08677 C2A_Synaptotagmin-13 C 99.8 2.7E-18 5.9E-23 151.8 12.8 102 363-475 10-118 (118)
37 cd08377 C2C_MCTP_PRT C2 domain 99.8 5.4E-18 1.2E-22 154.5 15.3 117 367-495 1-118 (119)
38 cd04029 C2A_SLP-4_5 C2 domain 99.8 2.9E-18 6.2E-23 156.9 13.5 116 328-476 1-125 (125)
39 cd08377 C2C_MCTP_PRT C2 domain 99.8 7.2E-18 1.6E-22 153.6 16.1 117 40-164 1-118 (119)
40 cd04022 C2A_MCTP_PRT_plant C2 99.8 3.8E-18 8.3E-23 157.1 14.0 119 368-495 1-125 (127)
41 cd08678 C2_C21orf25-like C2 do 99.8 5.4E-18 1.2E-22 155.8 14.8 118 369-497 1-121 (126)
42 cd04028 C2B_RIM1alpha C2 domai 99.8 5.1E-18 1.1E-22 157.6 14.5 104 367-478 29-139 (146)
43 cd08394 C2A_Munc13 C2 domain f 99.8 3.6E-18 7.9E-23 152.4 12.8 102 39-148 1-102 (127)
44 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 5.6E-18 1.2E-22 157.6 14.8 123 41-164 1-132 (133)
45 cd04028 C2B_RIM1alpha C2 domai 99.8 5.1E-18 1.1E-22 157.6 14.2 118 22-149 15-140 (146)
46 cd08393 C2A_SLP-1_2 C2 domain 99.8 3.8E-18 8.3E-23 156.3 13.2 115 25-146 2-125 (125)
47 cd08381 C2B_PI3K_class_II C2 d 99.8 4.7E-18 1E-22 154.8 13.5 99 367-475 13-121 (122)
48 cd04024 C2A_Synaptotagmin-like 99.8 5.9E-18 1.3E-22 156.4 14.4 121 367-494 1-127 (128)
49 cd08392 C2A_SLP-3 C2 domain fi 99.8 5E-18 1.1E-22 155.5 13.7 117 25-145 2-127 (128)
50 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 1.1E-17 2.3E-22 152.2 15.2 117 42-164 2-121 (121)
51 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 1.1E-17 2.3E-22 153.4 15.2 116 42-162 2-122 (123)
52 cd08393 C2A_SLP-1_2 C2 domain 99.8 5.4E-18 1.2E-22 155.2 12.4 116 328-476 1-125 (125)
53 cd08391 C2A_C2C_Synaptotagmin_ 99.8 1.3E-17 2.8E-22 152.5 14.9 114 40-163 1-120 (121)
54 cd08391 C2A_C2C_Synaptotagmin_ 99.8 9.9E-18 2.1E-22 153.2 14.1 115 367-494 1-120 (121)
55 cd04050 C2B_Synaptotagmin-like 99.8 7.2E-18 1.6E-22 149.6 12.6 102 42-148 2-103 (105)
56 cd04015 C2_plant_PLD C2 domain 99.8 2.1E-17 4.6E-22 157.3 16.3 120 39-164 6-157 (158)
57 cd04036 C2_cPLA2 C2 domain pre 99.8 1.3E-17 2.8E-22 151.8 14.0 113 42-164 2-117 (119)
58 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 1.1E-17 2.3E-22 153.3 13.4 118 368-494 1-123 (123)
59 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 1.5E-17 3.2E-22 154.7 14.1 118 368-495 1-132 (133)
60 cd08395 C2C_Munc13 C2 domain t 99.7 9E-18 2E-22 150.9 12.1 102 42-149 2-114 (120)
61 cd04036 C2_cPLA2 C2 domain pre 99.7 1.8E-17 4E-22 150.8 14.1 112 369-496 2-118 (119)
62 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 2.6E-17 5.6E-22 150.0 14.5 116 369-494 2-120 (121)
63 cd04017 C2D_Ferlin C2 domain f 99.7 3.8E-17 8.2E-22 152.0 15.9 122 40-166 1-133 (135)
64 cd04029 C2A_SLP-4_5 C2 domain 99.7 1.8E-17 4E-22 151.5 13.5 115 25-146 2-125 (125)
65 cd08394 C2A_Munc13 C2 domain f 99.7 1.3E-17 2.7E-22 148.9 11.9 98 367-477 2-101 (127)
66 cd08400 C2_Ras_p21A1 C2 domain 99.7 5.9E-17 1.3E-21 148.6 16.5 118 39-165 3-123 (126)
67 cd04046 C2_Calpain C2 domain p 99.7 6.3E-17 1.4E-21 148.6 16.6 119 39-165 2-122 (126)
68 cd08387 C2A_Synaptotagmin-8 C2 99.7 2.3E-17 4.9E-22 151.4 13.6 115 328-476 2-123 (124)
69 cd04027 C2B_Munc13 C2 domain s 99.7 3.4E-17 7.3E-22 150.6 14.7 114 41-162 2-127 (127)
70 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 4.4E-17 9.5E-22 148.5 15.3 117 42-163 2-120 (121)
71 cd04046 C2_Calpain C2 domain p 99.7 5.9E-17 1.3E-21 148.8 16.2 118 366-495 2-121 (126)
72 cd08378 C2B_MCTP_PRT_plant C2 99.7 2.8E-17 6E-22 149.4 13.8 119 203-337 1-119 (121)
73 cd08678 C2_C21orf25-like C2 do 99.7 4.6E-17 1E-21 149.6 15.1 117 42-166 1-121 (126)
74 cd08387 C2A_Synaptotagmin-8 C2 99.7 4.2E-17 9E-22 149.6 14.2 115 25-146 3-123 (124)
75 cd08385 C2A_Synaptotagmin-1-5- 99.7 3.9E-17 8.5E-22 149.9 13.5 115 25-146 3-123 (124)
76 cd08385 C2A_Synaptotagmin-1-5- 99.7 5.3E-17 1.2E-21 149.0 13.9 103 365-476 14-123 (124)
77 cd04011 C2B_Ferlin C2 domain s 99.7 3.8E-17 8.1E-22 146.7 12.6 105 38-148 2-111 (111)
78 cd08392 C2A_SLP-3 C2 domain fi 99.7 6.8E-17 1.5E-21 148.0 14.5 106 202-310 15-128 (128)
79 cd04010 C2B_RasA3 C2 domain se 99.7 3.9E-17 8.3E-22 152.8 12.8 102 42-149 2-124 (148)
80 cd08388 C2A_Synaptotagmin-4-11 99.7 4.8E-17 1.1E-21 149.4 13.0 118 24-146 2-127 (128)
81 cd08395 C2C_Munc13 C2 domain t 99.7 4E-17 8.6E-22 146.8 11.9 100 368-477 1-112 (120)
82 cd04031 C2A_RIM1alpha C2 domai 99.7 5.1E-17 1.1E-21 149.4 13.0 114 25-146 3-125 (125)
83 cd04044 C2A_Tricalbin-like C2 99.7 4.8E-17 1E-21 149.4 12.8 119 366-496 1-123 (124)
84 cd04013 C2_SynGAP_like C2 doma 99.7 1E-16 2.2E-21 148.4 14.8 125 366-499 10-142 (146)
85 cd08685 C2_RGS-like C2 domain 99.7 5E-17 1.1E-21 147.1 12.3 100 367-475 12-119 (119)
86 cd04031 C2A_RIM1alpha C2 domai 99.7 6.8E-17 1.5E-21 148.6 13.3 114 328-476 2-125 (125)
87 cd04039 C2_PSD C2 domain prese 99.7 6.9E-17 1.5E-21 143.4 12.6 94 40-133 1-100 (108)
88 cd08680 C2_Kibra C2 domain fou 99.7 7.5E-17 1.6E-21 146.3 12.8 112 28-145 4-124 (124)
89 cd04051 C2_SRC2_like C2 domain 99.7 7.1E-17 1.5E-21 148.4 12.4 118 41-160 1-125 (125)
90 cd04030 C2C_KIAA1228 C2 domain 99.7 1E-16 2.3E-21 147.8 13.5 105 365-476 14-127 (127)
91 cd04014 C2_PKC_epsilon C2 doma 99.7 1.8E-16 3.9E-21 147.0 15.0 117 366-497 3-130 (132)
92 cd08685 C2_RGS-like C2 domain 99.7 7.3E-17 1.6E-21 146.0 12.0 102 38-145 10-119 (119)
93 cd04011 C2B_Ferlin C2 domain s 99.7 8.4E-17 1.8E-21 144.4 12.4 107 199-312 1-111 (111)
94 cd04010 C2B_RasA3 C2 domain se 99.7 5.7E-17 1.2E-21 151.7 11.4 115 368-493 1-147 (148)
95 cd08688 C2_KIAA0528-like C2 do 99.7 9.9E-17 2.1E-21 143.6 12.5 104 42-147 1-109 (110)
96 cd08386 C2A_Synaptotagmin-7 C2 99.7 1.2E-16 2.6E-21 146.9 13.3 116 24-146 2-124 (125)
97 cd08373 C2A_Ferlin C2 domain f 99.7 2.3E-16 4.9E-21 145.4 15.0 115 46-168 2-119 (127)
98 cd04039 C2_PSD C2 domain prese 99.7 9.8E-17 2.1E-21 142.4 12.1 95 367-467 1-99 (108)
99 cd08688 C2_KIAA0528-like C2 do 99.7 5.8E-17 1.3E-21 145.1 10.6 101 369-477 1-109 (110)
100 cd04030 C2C_KIAA1228 C2 domain 99.7 1.5E-16 3.2E-21 146.8 13.3 115 25-146 3-127 (127)
101 cd08680 C2_Kibra C2 domain fou 99.7 1.4E-16 3E-21 144.6 12.8 104 363-475 10-124 (124)
102 cd08382 C2_Smurf-like C2 domai 99.7 2.5E-16 5.3E-21 144.0 14.5 115 42-162 2-122 (123)
103 cd04027 C2B_Munc13 C2 domain s 99.7 2.2E-16 4.8E-21 145.2 14.0 120 368-493 2-127 (127)
104 cd04041 C2A_fungal C2 domain f 99.7 7.2E-17 1.6E-21 144.7 10.5 100 40-147 1-108 (111)
105 cd08386 C2A_Synaptotagmin-7 C2 99.7 2.1E-16 4.5E-21 145.3 13.7 115 328-476 2-124 (125)
106 cd08388 C2A_Synaptotagmin-4-11 99.7 3.2E-16 7E-21 144.0 14.7 116 328-476 2-127 (128)
107 cd08521 C2A_SLP C2 domain firs 99.7 1.8E-16 4E-21 145.3 13.0 103 365-475 12-123 (123)
108 cd08407 C2B_Synaptotagmin-13 C 99.7 2E-16 4.2E-21 146.0 13.1 116 329-477 2-125 (138)
109 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 1.8E-16 3.9E-21 151.5 13.3 118 25-147 2-138 (162)
110 cd04050 C2B_Synaptotagmin-like 99.7 1.4E-16 3E-21 141.4 11.7 102 204-312 2-103 (105)
111 cd04014 C2_PKC_epsilon C2 doma 99.7 5.4E-16 1.2E-20 143.9 16.0 115 40-166 4-130 (132)
112 cd04044 C2A_Tricalbin-like C2 99.7 2.8E-16 6E-21 144.3 13.9 119 39-165 1-123 (124)
113 cd08389 C2A_Synaptotagmin-14_1 99.7 2.4E-16 5.2E-21 144.1 13.0 114 25-146 3-123 (124)
114 cd08521 C2A_SLP C2 domain firs 99.7 3.8E-16 8.3E-21 143.1 13.9 113 26-145 2-123 (123)
115 cd08389 C2A_Synaptotagmin-14_1 99.7 3.2E-16 6.9E-21 143.2 13.1 114 328-476 2-123 (124)
116 cd04018 C2C_Ferlin C2 domain t 99.7 2.6E-16 5.7E-21 147.4 12.6 104 368-477 1-125 (151)
117 cd08373 C2A_Ferlin C2 domain f 99.7 6.4E-16 1.4E-20 142.4 14.9 113 373-498 2-118 (127)
118 cd04043 C2_Munc13_fungal C2 do 99.7 8.3E-16 1.8E-20 141.5 15.6 118 40-166 1-122 (126)
119 cd08382 C2_Smurf-like C2 domai 99.7 3.6E-16 7.7E-21 142.9 12.8 117 369-493 2-122 (123)
120 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 3.7E-16 8.1E-21 149.3 12.7 127 328-476 1-137 (162)
121 cd04018 C2C_Ferlin C2 domain t 99.7 6.3E-16 1.4E-20 144.8 13.7 108 42-149 2-127 (151)
122 cd08390 C2A_Synaptotagmin-15-1 99.7 7E-16 1.5E-20 141.4 13.7 114 27-147 3-123 (123)
123 cd04017 C2D_Ferlin C2 domain f 99.7 1.2E-15 2.5E-20 142.0 15.0 120 203-337 2-131 (135)
124 cd08390 C2A_Synaptotagmin-15-1 99.7 7.9E-16 1.7E-20 141.0 13.6 105 364-476 11-122 (123)
125 cd08676 C2A_Munc13-like C2 dom 99.7 6E-16 1.3E-20 145.1 12.4 101 36-145 24-153 (153)
126 cd08407 C2B_Synaptotagmin-13 C 99.7 7.2E-16 1.6E-20 142.3 12.6 90 201-291 14-112 (138)
127 cd08406 C2B_Synaptotagmin-12 C 99.7 9.8E-16 2.1E-20 141.6 13.0 103 364-477 12-123 (136)
128 cd04051 C2_SRC2_like C2 domain 99.7 6.1E-16 1.3E-20 142.2 11.6 112 368-491 1-125 (125)
129 cd08406 C2B_Synaptotagmin-12 C 99.7 2.6E-16 5.6E-21 145.4 8.6 117 25-150 2-126 (136)
130 cd08691 C2_NEDL1-like C2 domai 99.7 2.4E-15 5.1E-20 138.8 14.7 117 41-162 2-136 (137)
131 cd04032 C2_Perforin C2 domain 99.7 8.6E-16 1.9E-20 139.6 11.6 94 36-130 24-119 (127)
132 cd08692 C2B_Tac2-N C2 domain s 99.7 1.9E-15 4.1E-20 137.2 13.7 106 363-477 10-123 (135)
133 PF04842 DUF639: Plant protein 99.6 5.4E-16 1.2E-20 170.5 11.9 177 569-776 485-673 (683)
134 cd08690 C2_Freud-1 C2 domain f 99.6 3.3E-15 7.1E-20 139.8 15.2 115 369-495 4-136 (155)
135 cd04049 C2_putative_Elicitor-r 99.6 1E-15 2.3E-20 140.4 11.7 102 367-477 1-108 (124)
136 cd04040 C2D_Tricalbin-like C2 99.6 1.8E-15 3.8E-20 136.9 13.1 112 42-160 1-114 (115)
137 cd08384 C2B_Rabphilin_Doc2 C2 99.6 5.6E-16 1.2E-20 144.0 9.9 114 29-151 4-125 (133)
138 cd04043 C2_Munc13_fungal C2 do 99.6 3.6E-15 7.8E-20 137.3 15.0 118 203-339 2-122 (126)
139 cd04038 C2_ArfGAP C2 domain pr 99.6 1.4E-15 3E-20 141.9 12.1 91 39-131 1-92 (145)
140 cd08690 C2_Freud-1 C2 domain f 99.6 5E-15 1.1E-19 138.5 15.5 118 42-166 4-138 (155)
141 PLN03008 Phospholipase D delta 99.6 1.4E-15 3.1E-20 172.0 14.0 126 367-499 14-180 (868)
142 cd04049 C2_putative_Elicitor-r 99.6 2.6E-15 5.6E-20 137.7 12.8 104 40-148 1-109 (124)
143 cd04038 C2_ArfGAP C2 domain pr 99.6 3.6E-15 7.7E-20 139.2 13.7 90 366-465 1-91 (145)
144 cd08404 C2B_Synaptotagmin-4 C2 99.6 8.7E-16 1.9E-20 143.2 9.5 118 25-151 2-127 (136)
145 cd04040 C2D_Tricalbin-like C2 99.6 4E-15 8.6E-20 134.6 13.2 111 369-491 1-114 (115)
146 cd08675 C2B_RasGAP C2 domain s 99.6 2.3E-15 4.9E-20 139.9 11.8 102 42-149 1-122 (137)
147 cd04021 C2_E3_ubiquitin_ligase 99.6 6.2E-15 1.3E-19 135.0 14.5 119 41-162 3-124 (125)
148 cd04045 C2C_Tricalbin-like C2 99.6 4.2E-15 9.2E-20 134.9 13.1 103 40-149 1-105 (120)
149 cd04045 C2C_Tricalbin-like C2 99.6 2.7E-15 5.9E-20 136.2 11.8 101 367-477 1-103 (120)
150 cd04026 C2_PKC_alpha_gamma C2 99.6 3.6E-15 7.9E-20 138.2 12.8 101 367-477 13-121 (131)
151 cd04009 C2B_Munc13-like C2 dom 99.6 3.2E-15 6.9E-20 138.7 12.4 105 25-131 3-119 (133)
152 cd08692 C2B_Tac2-N C2 domain s 99.6 4.9E-15 1.1E-19 134.5 12.8 93 199-292 11-110 (135)
153 cd04026 C2_PKC_alpha_gamma C2 99.6 5.1E-15 1.1E-19 137.2 13.2 115 25-149 2-123 (131)
154 cd04032 C2_Perforin C2 domain 99.6 3.4E-15 7.3E-20 135.7 11.7 94 363-466 24-120 (127)
155 cd04041 C2A_fungal C2 domain f 99.6 2.3E-15 4.9E-20 135.0 10.3 101 202-311 1-108 (111)
156 cd08404 C2B_Synaptotagmin-4 C2 99.6 1.6E-15 3.5E-20 141.4 9.6 101 366-477 14-123 (136)
157 cd08410 C2B_Synaptotagmin-17 C 99.6 1.7E-15 3.7E-20 140.8 9.1 117 27-151 3-127 (135)
158 cd08675 C2B_RasGAP C2 domain s 99.6 3E-15 6.5E-20 139.1 10.6 102 369-480 1-123 (137)
159 cd08383 C2A_RasGAP C2 domain ( 99.6 1E-14 2.3E-19 132.3 14.0 112 42-164 2-117 (117)
160 cd08383 C2A_RasGAP C2 domain ( 99.6 7.7E-15 1.7E-19 133.2 13.1 111 369-495 2-117 (117)
161 cd08408 C2B_Synaptotagmin-14_1 99.6 1.4E-15 3E-20 141.3 8.3 117 27-151 4-129 (138)
162 cd08402 C2B_Synaptotagmin-1 C2 99.6 1.8E-15 3.9E-20 141.1 9.1 117 26-151 3-127 (136)
163 cd04009 C2B_Munc13-like C2 dom 99.6 6.2E-15 1.4E-19 136.7 12.6 91 366-465 15-118 (133)
164 cd08405 C2B_Synaptotagmin-7 C2 99.6 1.9E-15 4.1E-20 141.0 9.1 118 25-151 2-127 (136)
165 cd08405 C2B_Synaptotagmin-7 C2 99.6 1.1E-14 2.5E-19 135.7 13.9 90 202-292 15-111 (136)
166 cd04037 C2E_Ferlin C2 domain f 99.6 4.8E-15 1E-19 135.6 11.0 90 41-130 1-93 (124)
167 cd08402 C2B_Synaptotagmin-1 C2 99.6 8.3E-15 1.8E-19 136.7 12.8 103 200-310 13-122 (136)
168 cd08410 C2B_Synaptotagmin-17 C 99.6 1E-14 2.2E-19 135.5 12.8 105 201-312 13-124 (135)
169 cd04021 C2_E3_ubiquitin_ligase 99.6 1.7E-14 3.8E-19 132.0 13.8 115 368-493 3-124 (125)
170 cd08409 C2B_Synaptotagmin-15 C 99.6 3.3E-15 7.2E-20 139.0 8.8 103 365-477 13-124 (137)
171 cd08403 C2B_Synaptotagmin-3-5- 99.6 2E-14 4.3E-19 133.7 13.5 104 363-477 10-122 (134)
172 cd08409 C2B_Synaptotagmin-15 C 99.6 4.5E-15 9.8E-20 138.1 8.7 117 25-149 2-126 (137)
173 cd08403 C2B_Synaptotagmin-3-5- 99.6 6.6E-15 1.4E-19 136.9 9.7 117 26-151 2-126 (134)
174 cd08408 C2B_Synaptotagmin-14_1 99.6 1.8E-14 3.9E-19 133.9 12.5 103 201-310 14-124 (138)
175 cd00275 C2_PLC_like C2 domain 99.6 4.7E-14 1E-18 130.3 15.2 117 40-164 2-127 (128)
176 cd08676 C2A_Munc13-like C2 dom 99.6 1.5E-14 3.3E-19 135.6 11.8 102 197-309 23-153 (153)
177 cd04052 C2B_Tricalbin-like C2 99.6 1.9E-14 4E-19 129.0 11.5 101 57-166 9-110 (111)
178 cd00276 C2B_Synaptotagmin C2 d 99.6 5.6E-15 1.2E-19 137.6 8.4 102 365-477 12-122 (134)
179 KOG0696 Serine/threonine prote 99.6 1.5E-15 3.3E-20 155.8 4.5 105 39-149 179-290 (683)
180 cd00276 C2B_Synaptotagmin C2 d 99.6 6.8E-15 1.5E-19 137.1 8.4 116 27-151 3-126 (134)
181 cd08384 C2B_Rabphilin_Doc2 C2 99.6 3.3E-14 7.1E-19 132.1 12.9 104 200-311 11-121 (133)
182 KOG1013 Synaptic vesicle prote 99.6 2.4E-15 5.1E-20 150.3 4.9 224 28-290 83-327 (362)
183 cd04013 C2_SynGAP_like C2 doma 99.6 8.9E-14 1.9E-18 128.8 14.9 117 39-166 10-140 (146)
184 cd04052 C2B_Tricalbin-like C2 99.5 3.5E-14 7.5E-19 127.3 11.5 97 388-497 10-110 (111)
185 cd04035 C2A_Rabphilin_Doc2 C2 99.5 5.5E-14 1.2E-18 128.7 12.6 106 25-132 2-115 (123)
186 cd04048 C2A_Copine C2 domain f 99.5 3.8E-14 8.3E-19 129.1 11.1 98 45-147 5-114 (120)
187 PLN03008 Phospholipase D delta 99.5 5.3E-14 1.2E-18 159.4 14.2 125 39-169 13-181 (868)
188 cd04035 C2A_Rabphilin_Doc2 C2 99.5 1.2E-13 2.6E-18 126.4 13.8 99 366-474 14-122 (123)
189 KOG0696 Serine/threonine prote 99.5 6.3E-15 1.4E-19 151.3 5.6 104 203-313 181-290 (683)
190 cd08691 C2_NEDL1-like C2 domai 99.5 1.9E-13 4.1E-18 126.2 13.9 117 204-335 3-136 (137)
191 cd00275 C2_PLC_like C2 domain 99.5 2.5E-13 5.4E-18 125.4 14.7 116 368-495 3-127 (128)
192 cd04037 C2E_Ferlin C2 domain f 99.5 1.3E-13 2.8E-18 126.1 11.7 89 204-293 2-92 (124)
193 cd08686 C2_ABR C2 domain in th 99.5 2.4E-13 5.2E-18 119.9 12.4 86 369-462 1-92 (118)
194 PLN03200 cellulose synthase-in 99.5 5.8E-14 1.2E-18 173.6 11.7 117 364-495 1977-2099(2102)
195 cd04048 C2A_Copine C2 domain f 99.5 1.2E-13 2.6E-18 125.8 10.7 97 372-477 5-114 (120)
196 cd08686 C2_ABR C2 domain in th 99.5 1.7E-13 3.7E-18 120.9 10.4 79 42-127 1-92 (118)
197 PLN03200 cellulose synthase-in 99.5 2.1E-13 4.5E-18 168.8 11.8 121 35-165 1975-2100(2102)
198 cd04047 C2B_Copine C2 domain s 99.4 5.1E-13 1.1E-17 119.7 10.6 87 44-131 4-101 (110)
199 KOG1011 Neurotransmitter relea 99.4 2.1E-13 4.6E-18 145.6 8.7 119 40-166 295-425 (1283)
200 KOG1013 Synaptic vesicle prote 99.4 1.3E-13 2.9E-18 137.9 5.3 219 203-463 94-329 (362)
201 PF00168 C2: C2 domain; Inter 99.4 1.5E-12 3.3E-17 110.4 8.9 81 42-122 1-85 (85)
202 cd04047 C2B_Copine C2 domain s 99.4 2.7E-12 5.9E-17 115.0 10.0 87 371-467 4-102 (110)
203 PF00168 C2: C2 domain; Inter 99.3 1.4E-11 3E-16 104.5 9.1 82 204-286 1-85 (85)
204 KOG1011 Neurotransmitter relea 99.3 6.9E-12 1.5E-16 134.3 8.5 123 366-495 294-423 (1283)
205 PLN02270 phospholipase D alpha 99.2 6.3E-11 1.4E-15 134.9 14.3 126 367-499 8-151 (808)
206 cd08374 C2F_Ferlin C2 domain s 99.2 4.2E-11 9E-16 108.9 10.2 94 368-467 1-125 (133)
207 cd00030 C2 C2 domain. The C2 d 99.2 1.6E-10 3.4E-15 100.8 11.6 99 42-145 1-102 (102)
208 cd00030 C2 C2 domain. The C2 d 99.2 1.2E-10 2.6E-15 101.6 10.6 98 369-475 1-102 (102)
209 smart00239 C2 Protein kinase C 99.2 1.9E-10 4.2E-15 100.5 10.4 91 369-468 2-97 (101)
210 smart00239 C2 Protein kinase C 99.2 2.8E-10 6E-15 99.5 11.2 91 42-132 2-96 (101)
211 PF06398 Pex24p: Integral pero 99.1 2.4E-10 5.1E-15 124.8 12.7 175 563-761 2-194 (359)
212 PLN02223 phosphoinositide phos 99.1 4E-10 8.6E-15 123.5 14.1 117 40-164 409-536 (537)
213 cd08374 C2F_Ferlin C2 domain s 99.1 3.6E-10 7.7E-15 102.9 10.0 91 42-132 2-125 (133)
214 KOG1326 Membrane-associated pr 99.1 2.8E-10 6.1E-15 128.8 9.9 257 37-294 610-969 (1105)
215 PLN02270 phospholipase D alpha 99.1 1.6E-09 3.4E-14 123.7 14.4 123 40-168 8-151 (808)
216 PLN02952 phosphoinositide phos 99.1 1.8E-09 4E-14 121.1 14.5 118 39-164 469-598 (599)
217 KOG1328 Synaptic vesicle prote 99.0 6.1E-11 1.3E-15 129.0 1.1 126 37-168 111-304 (1103)
218 PLN02223 phosphoinositide phos 99.0 3.2E-09 6.9E-14 116.5 14.3 105 366-479 408-521 (537)
219 cd08689 C2_fungal_Pkc1p C2 dom 99.0 2E-09 4.4E-14 91.4 8.5 84 42-130 1-88 (109)
220 KOG1031 Predicted Ca2+-depende 99.0 2.2E-09 4.7E-14 114.1 10.7 119 367-496 3-136 (1169)
221 PLN02952 phosphoinositide phos 99.0 7.3E-09 1.6E-13 116.3 14.8 119 366-496 469-597 (599)
222 PLN02230 phosphoinositide phos 99.0 4.7E-09 1E-13 117.6 13.0 118 39-164 468-597 (598)
223 KOG1327 Copine [Signal transdu 98.9 1E-08 2.2E-13 111.5 14.5 198 54-293 4-235 (529)
224 PLN02222 phosphoinositide phos 98.9 1E-08 2.3E-13 114.7 14.4 117 40-164 452-580 (581)
225 cd08689 C2_fungal_Pkc1p C2 dom 98.9 7.6E-09 1.6E-13 88.0 8.5 85 369-464 1-87 (109)
226 PLN02228 Phosphoinositide phos 98.9 2.4E-08 5.1E-13 111.6 13.7 118 40-165 431-561 (567)
227 KOG0169 Phosphoinositide-speci 98.8 1.7E-08 3.6E-13 112.9 12.0 118 40-165 616-744 (746)
228 PLN02230 phosphoinositide phos 98.8 3E-08 6.4E-13 111.3 13.7 120 366-495 468-597 (598)
229 KOG1031 Predicted Ca2+-depende 98.8 8E-09 1.7E-13 109.9 8.2 125 39-165 2-136 (1169)
230 PLN02222 phosphoinositide phos 98.8 4.3E-08 9.3E-13 109.9 14.4 120 366-495 451-580 (581)
231 PLN02228 Phosphoinositide phos 98.8 4.3E-08 9.3E-13 109.6 14.4 121 367-497 431-562 (567)
232 KOG0169 Phosphoinositide-speci 98.8 4.7E-08 1E-12 109.4 11.9 118 368-495 617-743 (746)
233 KOG1328 Synaptic vesicle prote 98.8 3.9E-09 8.4E-14 115.3 3.2 100 29-130 938-1049(1103)
234 cd08683 C2_C2cd3 C2 domain fou 98.7 1.3E-08 2.8E-13 89.0 5.0 107 369-475 1-143 (143)
235 PLN02352 phospholipase D epsil 98.7 1.3E-07 2.7E-12 108.2 13.3 119 367-500 10-134 (758)
236 KOG1327 Copine [Signal transdu 98.7 2.6E-07 5.6E-12 100.8 13.8 179 235-465 42-236 (529)
237 KOG1264 Phospholipase C [Lipid 98.6 1.7E-07 3.7E-12 103.8 10.9 119 40-167 1065-1191(1267)
238 KOG1264 Phospholipase C [Lipid 98.6 1.9E-07 4E-12 103.6 10.9 98 367-477 1065-1171(1267)
239 KOG0905 Phosphoinositide 3-kin 98.4 2.3E-07 5E-12 106.7 6.1 119 324-477 1508-1635(1639)
240 PLN02352 phospholipase D epsil 98.4 2E-06 4.3E-11 98.6 13.2 118 40-168 10-133 (758)
241 KOG0905 Phosphoinositide 3-kin 98.4 5.3E-07 1.1E-11 103.9 7.1 114 26-148 1514-1636(1639)
242 PF12416 DUF3668: Cep120 prote 98.3 0.00023 5E-09 75.4 25.6 244 42-295 2-296 (340)
243 cd08684 C2A_Tac2-N C2 domain f 97.9 1.3E-05 2.8E-10 65.2 4.2 89 42-131 1-95 (103)
244 PF12416 DUF3668: Cep120 prote 97.9 0.0087 1.9E-07 63.6 26.3 239 204-465 2-295 (340)
245 PLN02964 phosphatidylserine de 97.8 4.8E-05 1E-09 86.9 7.5 90 35-131 49-140 (644)
246 cd08683 C2_C2cd3 C2 domain fou 97.7 7E-05 1.5E-09 66.0 6.2 82 223-309 33-143 (143)
247 KOG3837 Uncharacterized conser 97.6 5.1E-05 1.1E-09 79.0 3.7 119 40-165 367-503 (523)
248 PLN02964 phosphatidylserine de 97.5 0.00013 2.9E-09 83.4 6.2 88 365-467 52-141 (644)
249 KOG2060 Rab3 effector RIM1 and 97.3 0.00012 2.6E-09 75.8 3.1 110 364-480 266-382 (405)
250 KOG3837 Uncharacterized conser 97.3 0.0002 4.4E-09 74.7 4.1 117 367-495 367-502 (523)
251 cd08684 C2A_Tac2-N C2 domain f 97.2 0.00064 1.4E-08 55.6 4.7 87 205-294 2-94 (103)
252 KOG2060 Rab3 effector RIM1 and 96.6 0.0018 3.9E-08 67.3 3.8 111 34-149 263-381 (405)
253 KOG1265 Phospholipase C [Lipid 96.1 0.027 5.9E-07 64.6 9.7 95 202-312 703-806 (1189)
254 PF15627 CEP76-C2: CEP76 C2 do 95.6 0.1 2.2E-06 48.7 9.8 125 367-497 9-151 (156)
255 PF15627 CEP76-C2: CEP76 C2 do 95.6 0.17 3.6E-06 47.4 11.1 96 199-295 6-118 (156)
256 KOG1265 Phospholipase C [Lipid 95.6 0.066 1.4E-06 61.6 10.0 112 39-165 702-823 (1189)
257 PF08372 PRT_C: Plant phosphor 95.3 0.061 1.3E-06 50.2 7.4 47 573-620 68-117 (156)
258 cd08398 C2_PI3K_class_I_alpha 95.1 0.16 3.4E-06 48.2 9.7 101 41-166 9-123 (158)
259 cd08693 C2_PI3K_class_I_beta_d 95.0 0.14 3.1E-06 49.3 9.3 85 41-127 9-119 (173)
260 PF10358 NT-C2: N-terminal C2 94.8 0.91 2E-05 42.3 14.1 115 367-497 7-136 (143)
261 cd08693 C2_PI3K_class_I_beta_d 94.8 0.17 3.7E-06 48.8 9.2 87 203-292 9-120 (173)
262 cd08398 C2_PI3K_class_I_alpha 94.6 0.24 5.2E-06 46.9 9.4 84 204-292 10-106 (158)
263 PF02453 Reticulon: Reticulon; 94.5 0.011 2.3E-07 57.2 0.1 60 700-759 89-148 (169)
264 cd08397 C2_PI3K_class_III C2 d 94.1 0.41 8.9E-06 45.5 10.0 93 59-172 28-130 (159)
265 PF10358 NT-C2: N-terminal C2 94.0 1.2 2.5E-05 41.6 12.9 118 40-167 7-137 (143)
266 cd08380 C2_PI3K_like C2 domain 93.8 0.56 1.2E-05 44.5 10.4 87 41-128 9-107 (156)
267 cd08380 C2_PI3K_like C2 domain 93.5 0.45 9.8E-06 45.2 9.1 87 204-292 10-107 (156)
268 cd08687 C2_PKN-like C2 domain 93.5 0.79 1.7E-05 38.3 9.0 64 61-129 9-73 (98)
269 KOG1452 Predicted Rho GTPase-a 93.4 0.2 4.3E-06 51.1 6.6 114 364-495 48-166 (442)
270 cd08397 C2_PI3K_class_III C2 d 92.9 0.34 7.3E-06 46.0 7.2 67 391-463 31-107 (159)
271 KOG1452 Predicted Rho GTPase-a 92.9 0.26 5.6E-06 50.3 6.6 83 33-117 44-130 (442)
272 cd04012 C2A_PI3K_class_II C2 d 92.3 0.49 1.1E-05 45.7 7.6 90 203-292 9-119 (171)
273 cd04012 C2A_PI3K_class_II C2 d 92.1 1.1 2.3E-05 43.4 9.6 106 40-166 8-136 (171)
274 cd08399 C2_PI3K_class_I_gamma 91.9 1 2.2E-05 43.5 9.0 69 204-274 12-88 (178)
275 cd08399 C2_PI3K_class_I_gamma 90.5 3 6.5E-05 40.3 10.8 92 368-463 11-122 (178)
276 PF00792 PI3K_C2: Phosphoinosi 89.8 2.5 5.5E-05 39.3 9.6 54 404-463 23-85 (142)
277 KOG1329 Phospholipase D1 [Lipi 89.6 0.17 3.7E-06 59.2 1.7 103 391-499 139-243 (887)
278 cd08695 C2_Dock-B C2 domains f 88.9 3.4 7.5E-05 40.1 9.9 40 73-112 54-95 (189)
279 PF00792 PI3K_C2: Phosphoinosi 87.9 4 8.8E-05 37.9 9.6 74 75-169 23-105 (142)
280 smart00142 PI3K_C2 Phosphoinos 86.9 3.8 8.3E-05 35.5 8.1 70 42-111 13-91 (100)
281 cd08687 C2_PKN-like C2 domain 86.3 7.5 0.00016 32.7 8.8 82 391-495 10-92 (98)
282 smart00142 PI3K_C2 Phosphoinos 84.4 6.1 0.00013 34.2 8.2 70 204-274 13-91 (100)
283 cd08694 C2_Dock-A C2 domains f 84.3 7.2 0.00016 38.1 9.3 40 73-112 54-95 (196)
284 PF11618 DUF3250: Protein of u 83.6 4.9 0.00011 35.3 7.1 94 393-496 2-105 (107)
285 PF15625 CC2D2AN-C2: CC2D2A N- 83.4 25 0.00054 33.7 12.7 87 223-312 37-125 (168)
286 PF14429 DOCK-C2: C2 domain in 82.4 4.8 0.0001 39.3 7.5 58 402-462 60-120 (184)
287 PF08151 FerI: FerI (NUC094) d 81.9 1.7 3.6E-05 35.1 3.3 43 288-340 2-44 (72)
288 PF14429 DOCK-C2: C2 domain in 80.7 4.1 8.9E-05 39.8 6.4 55 73-127 60-120 (184)
289 PTZ00447 apical membrane antig 75.9 31 0.00067 36.2 11.0 112 38-162 56-170 (508)
290 cd08695 C2_Dock-B C2 domains f 75.3 6 0.00013 38.5 5.5 56 402-461 54-112 (189)
291 PTZ00447 apical membrane antig 75.1 29 0.00063 36.4 10.5 110 366-493 57-170 (508)
292 PF11618 DUF3250: Protein of u 72.9 8 0.00017 34.0 5.3 95 64-164 2-104 (107)
293 PF15625 CC2D2AN-C2: CC2D2A N- 72.2 21 0.00045 34.3 8.5 70 60-130 36-108 (168)
294 PF11696 DUF3292: Protein of u 70.7 6.7 0.00014 45.0 5.3 64 701-767 105-169 (642)
295 cd08694 C2_Dock-A C2 domains f 70.3 13 0.00027 36.4 6.4 59 401-461 53-114 (196)
296 cd08696 C2_Dock-C C2 domains f 69.7 14 0.0003 35.8 6.5 62 401-462 54-118 (179)
297 KOG3543 Ca2+-dependent activat 66.8 30 0.00066 39.0 9.1 117 368-495 342-458 (1218)
298 PF08151 FerI: FerI (NUC094) d 66.3 11 0.00025 30.3 4.4 51 124-176 2-53 (72)
299 cd08679 C2_DOCK180_related C2 64.8 16 0.00034 35.5 6.0 52 75-126 55-114 (178)
300 PF06398 Pex24p: Integral pero 63.3 8.7 0.00019 42.0 4.4 43 697-739 15-60 (359)
301 cd08696 C2_Dock-C C2 domains f 61.8 22 0.00049 34.4 6.4 40 73-112 55-96 (179)
302 cd05137 RasGAP_CLA2_BUD2 CLA2/ 58.1 13 0.00028 41.0 4.5 46 452-499 1-47 (395)
303 cd08697 C2_Dock-D C2 domains f 55.8 35 0.00076 33.2 6.6 39 73-111 57-97 (185)
304 cd08697 C2_Dock-D C2 domains f 54.4 51 0.0011 32.1 7.4 62 401-462 56-123 (185)
305 KOG1329 Phospholipase D1 [Lipi 53.0 32 0.00069 41.1 6.7 85 61-151 138-225 (887)
306 KOG0904 Phosphatidylinositol 3 52.4 68 0.0015 38.2 9.1 104 367-476 343-473 (1076)
307 KOG0694 Serine/threonine prote 50.6 5.2 0.00011 45.9 0.0 94 60-166 27-122 (694)
308 PF06219 DUF1005: Protein of u 50.5 98 0.0021 33.8 9.3 109 391-499 37-170 (460)
309 PF06219 DUF1005: Protein of u 49.6 1.5E+02 0.0033 32.4 10.5 105 60-165 35-167 (460)
310 PF07162 B9-C2: Ciliary basal 49.0 1.7E+02 0.0036 28.0 10.1 80 369-462 4-103 (168)
311 KOG3543 Ca2+-dependent activat 48.7 1.1E+02 0.0023 35.0 9.4 99 203-313 342-443 (1218)
312 PF09726 Macoilin: Transmembra 48.4 26 0.00057 41.6 5.3 16 737-752 91-106 (697)
313 KOG4027 Uncharacterized conser 48.3 78 0.0017 29.5 7.0 68 389-462 25-110 (187)
314 KOG0694 Serine/threonine prote 46.5 7.4 0.00016 44.8 0.4 92 391-497 29-122 (694)
315 PF15086 UPF0542: Uncharacteri 44.5 35 0.00076 27.2 3.7 38 584-625 5-44 (74)
316 cd08679 C2_DOCK180_related C2 43.7 65 0.0014 31.2 6.5 54 236-290 54-114 (178)
317 PF07162 B9-C2: Ciliary basal 43.2 2.6E+02 0.0056 26.7 10.4 80 204-289 4-101 (168)
318 KOG2419 Phosphatidylserine dec 41.9 6.7 0.00015 44.2 -0.8 190 204-463 282-480 (975)
319 PF14924 DUF4497: Protein of u 41.1 72 0.0016 28.2 5.8 64 428-497 28-105 (112)
320 PF04281 Tom22: Mitochondrial 36.8 1.4E+02 0.0031 27.4 7.0 39 681-719 51-91 (137)
321 PF02453 Reticulon: Reticulon; 36.0 12 0.00026 35.7 0.0 27 711-737 1-27 (169)
322 TIGR02302 aProt_lowcomp conser 33.1 1.8E+02 0.0038 35.5 8.9 49 715-766 133-196 (851)
323 KOG1792 Reticulon [Intracellul 32.2 1.3E+02 0.0028 30.4 6.6 37 703-739 132-168 (230)
324 PF14909 SPATA6: Spermatogenes 30.3 2.9E+02 0.0063 25.5 7.8 83 368-463 3-99 (140)
325 KOG2419 Phosphatidylserine dec 29.5 6.3 0.00014 44.5 -3.4 73 366-439 279-355 (975)
326 PF14924 DUF4497: Protein of u 29.2 1.7E+02 0.0036 25.9 6.2 68 98-167 26-106 (112)
327 KOG4269 Rac GTPase-activating 28.8 25 0.00055 41.6 1.0 67 39-112 758-829 (1112)
328 PF14851 FAM176: FAM176 family 28.8 1.2E+02 0.0026 28.5 5.3 13 591-603 14-26 (153)
329 PF00957 Synaptobrevin: Synapt 28.5 1.5E+02 0.0032 24.9 5.5 37 687-723 33-69 (89)
330 KOG3385 V-SNARE [Intracellular 27.8 1.5E+02 0.0032 26.2 5.2 17 681-697 39-55 (118)
331 PHA01159 hypothetical protein 27.8 93 0.002 27.4 4.0 78 687-777 5-82 (114)
332 PF08653 DASH_Dam1: DASH compl 27.4 2.5E+02 0.0053 21.7 5.8 49 683-734 3-51 (58)
333 KOG4269 Rac GTPase-activating 26.8 28 0.0006 41.3 0.9 90 365-462 757-855 (1112)
334 KOG0860 Synaptobrevin/VAMP-lik 25.2 1.7E+02 0.0036 26.1 5.1 32 694-725 66-97 (116)
335 PF04842 DUF639: Plant protein 24.5 54 0.0012 38.1 2.6 61 697-757 492-555 (683)
336 PHA02844 putative transmembran 24.1 1.7E+02 0.0036 23.6 4.4 17 702-718 18-34 (75)
337 PF10409 PTEN_C2: C2 domain of 23.2 5.6E+02 0.012 23.1 10.8 89 41-129 5-98 (134)
338 PF10409 PTEN_C2: C2 domain of 23.2 5.6E+02 0.012 23.1 10.1 88 204-293 6-98 (134)
339 KOG3142 Prenylated rab accepto 23.0 4.2E+02 0.009 25.9 7.9 74 528-619 21-95 (187)
340 KOG0904 Phosphatidylinositol 3 22.6 1.4E+02 0.0031 35.7 5.5 67 41-110 344-421 (1076)
No 1
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=100.00 E-value=5.2e-44 Score=326.42 Aligned_cols=156 Identities=62% Similarity=1.169 Sum_probs=152.5
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCCCCCcccchhhhcchhhhhcccCCCcccccccCCCCCCCChhHHHHHHHHHhhhhhh
Q 003975 617 LPTIFLYLFLIGMWNYRLRPRHPPHVDAKLSQAINAHLDELVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQ 696 (782)
Q Consensus 617 ~p~~~l~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~ 696 (782)
+|+++++++++++|||++||.+|+|+|.++|++++++ +||+|||+|.+|++++.+.+++||+++|+++++
T Consensus 1 lp~~~l~~~~~~~w~yr~rpr~p~~~d~~ls~~~~~~----------~deldEEfD~~ps~~~~~~lr~Rydrlr~va~r 70 (156)
T PF08372_consen 1 LPTVFLYLFLIGLWNYRFRPRHPPHMDTKLSHADSAH----------PDELDEEFDTFPSSRPPDSLRMRYDRLRSVAGR 70 (156)
T ss_pred CchHHHHHHHHHHhccccCCCCCCCCCccccccccCC----------cchhhhhhcccccccccHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999988 899999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHhcccccChhhHHHHHHHHHHHHHHHhhchhhhhhheeeeecccCCCCCCCCCCchhhhhccCCC
Q 003975 697 LQTMVGDLASQVERAQAILCWRDLRATFIFLIFSFIWAVFSYVTPFEVVAVLIGLYMLRHPRFRSKMPSVPVNFFKSFPS 776 (782)
Q Consensus 697 vq~~l~~~a~~~e~~~n~~~w~~p~~s~~~~~~l~~~~~~~~~vP~r~i~l~~g~~~~r~P~~~~~~~~~~~~~~~r~ps 776 (782)
|||++|++|+++||++|+|+|+||++|++++++|+++++++|++|+|+++++||+|++|||+||+++|+.+.|||+||||
T Consensus 71 vQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~~P~~~~nff~RlPs 150 (156)
T PF08372_consen 71 VQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNPLPSPPLNFFRRLPS 150 (156)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCCCCcHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCC
Q 003975 777 KSDMLI 782 (782)
Q Consensus 777 ~~~~~~ 782 (782)
++|+||
T Consensus 151 ~~d~~l 156 (156)
T PF08372_consen 151 RSDSML 156 (156)
T ss_pred chhhcC
Confidence 999986
No 2
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2e-28 Score=267.27 Aligned_cols=227 Identities=30% Similarity=0.429 Sum_probs=192.6
Q ss_pred cCCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eEeeeccccCCCCCccccEEEEEec--cC
Q 003975 24 RGGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN---YKGITKHLEKNQNPVWNQIFAFSKE--RL 98 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~kT~~i~~t~nP~Wne~f~f~~~--~~ 98 (782)
.|...+++.||+ +...|.|+|++|++|+..|..|.+||||++++.. .+.+|++.++|+||+|||+|.|.+. ++
T Consensus 153 ~G~l~fsl~Yd~--~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l 230 (421)
T KOG1028|consen 153 VGNLQFSLQYDF--ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEEL 230 (421)
T ss_pred eeeEEEEEEecc--cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHh
Confidence 445566666666 6789999999999999999788999999999975 4689999999999999999999964 46
Q ss_pred CCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCc-ccceEEEEEEEecccCCccccccc
Q 003975 99 QSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQ-TTKGEIMLAVWMGTQADESFAEAW 176 (782)
Q Consensus 99 ~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~-~~~G~l~l~~~~~~~~d~~~~~~~ 176 (782)
....|.+.|||+|.+ ++++||++.++|..+..... ...|.+|....... ...|+|.++++|.+
T Consensus 231 ~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~-----~~~w~~l~~~~~~~~~~~gel~~sL~Y~p---------- 295 (421)
T KOG1028|consen 231 SNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLST-----TLFWKDLQPSSTDSEELAGELLLSLCYLP---------- 295 (421)
T ss_pred ccCEEEEEEEecCCcccccEEEEEEecCcccccccc-----ceeeeccccccCCcccccceEEEEEEeec----------
Confidence 789999999999999 99999999999998876532 56899998864222 12489999999974
Q ss_pred cCCccccccccccccccccccCCceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeeecccCCCCCCccc
Q 003975 177 HSDAHNISQKNLANTRSKVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGN-----QLRVTRPSHVRSVNPVWN 251 (782)
Q Consensus 177 ~~~~~~~~~~~~~~~rs~~~~~p~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~~T~~~~~~t~nP~wn 251 (782)
..|.|+|.|++|++|..++.++.+||||++.+-. .+.+|.+.++ +.||+||
T Consensus 296 -----------------------~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~-~~npv~n 351 (421)
T KOG1028|consen 296 -----------------------TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKK-TLNPVFN 351 (421)
T ss_pred -----------------------CCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccC-CCCCccc
Confidence 3467999999999999999999999999999943 3466777776 9999999
Q ss_pred ceeEEEecC--CCCCeEEEEEEEccCCCCCceeEEEEEeCCC
Q 003975 252 EEHMFVASE--PFEDLIIVTVEDRIRPGKDEILGRELIPVRN 291 (782)
Q Consensus 252 e~f~f~v~~--~~~~~l~i~V~d~~~~~~d~~iG~~~i~l~~ 291 (782)
|+|.|.+.. ..+..+.|+|||++..+++++||.+.+....
T Consensus 352 esf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 352 ETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred ccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence 999998863 3455899999999999999999999998764
No 3
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.96 E-value=1.2e-26 Score=263.48 Aligned_cols=398 Identities=20% Similarity=0.239 Sum_probs=300.1
Q ss_pred cccceeEEEEEEEEeeCCCCCC--CCCCCCcEEEEEECC-eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCC
Q 003975 35 LVELMHYLCVNVVKARNLPVMD--VSGSLDPYVEVKLGN-YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKD 111 (782)
Q Consensus 35 ~~~~~~~L~V~v~~a~~L~~~d--~~g~~dPyv~v~~~~-~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d 111 (782)
.....|+|.|+|.+|++|...+ .++..|||+.+.+.+ ...+|++++++.||+|||+|++.++.. ++.|.++|||.+
T Consensus 431 s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n 509 (1227)
T COG5038 431 SGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFN 509 (1227)
T ss_pred cCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEeccc-CCceeEEEEecc
Confidence 4567899999999999999888 589999999999876 467999999999999999999999875 688999999988
Q ss_pred CC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEecccCCccccccccCCccccccccccc
Q 003975 112 IG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQADESFAEAWHSDAHNISQKNLAN 190 (782)
Q Consensus 112 ~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 190 (782)
.. +|+.+|++.++|..|..+.... .+-+.+.. +.. ..|+|...+.|.+..+......- +.
T Consensus 510 ~~~sd~vvG~~~l~L~~L~~~~~~~----ne~~e~~~-~~k--~vGrL~yDl~ffp~~e~k~~~~~-s~----------- 570 (1227)
T COG5038 510 SFKSDKVVGSTQLDLALLHQNPVKK----NELYEFLR-NTK--NVGRLTYDLRFFPVIEDKKELKG-SV----------- 570 (1227)
T ss_pred ccCCcceeeeEEechHHhhhccccc----cceeeeec-cCc--cceEEEEeeeeecccCCcccccc-cc-----------
Confidence 88 9999999999999998765432 22333332 122 58999999998865433211000 00
Q ss_pred cccccccCCceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE-eeeecccCCCCCCcccceeEEEecCCCCCeEEEE
Q 003975 191 TRSKVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQL-RVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVT 269 (782)
Q Consensus 191 ~rs~~~~~p~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~-~~T~~~~~~t~nP~wne~f~f~v~~~~~~~l~i~ 269 (782)
....+...|++.+++.++++|..... .+..-++++++..+. +.|+..+. +.+|.||+++...+.+.....+.+.
T Consensus 571 ---e~~ed~n~GI~k~tl~~~~~l~~~~~-~~~~~~a~l~~~~keV~st~~~k~-t~~~~wn~~~~~~v~~~~ns~~~~~ 645 (1227)
T COG5038 571 ---EPLEDSNTGILKVTLREVKALDELSS-KKDNKSAELYTNAKEVYSTGKLKF-TNHPSWNLQYNVLVTDRKNSSIKVV 645 (1227)
T ss_pred ---CCcccCCcceeEEEeeccccccCccc-cccceeEEEEecceEEeccceeee-ccCCceeeecceEeccCcceeEEEE
Confidence 00011236889999999999975432 222334889988765 45577776 9999999999999998888899999
Q ss_pred EEEccCCCCCceeEEEEEeCCCcccccCCCCCCCCceEEccCCCcccccccccccccccceEEEEEEeccCccccCCCcc
Q 003975 270 VEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCLEAGYHVFDESTH 349 (782)
Q Consensus 270 V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~~~~~~~~d~~~~ 349 (782)
++|.. ..+.+|+...+|.++. +.......||++..+. |+|.+..++.+-|...+.
T Consensus 646 ~~d~~---~g~~i~~~~~~l~~li----~~t~dt~~~f~~~~~k---------------g~I~~t~~W~Pi~~~~~~--- 700 (1227)
T COG5038 646 TFDVQ---SGKVIATEGSTLPDLI----DRTLDTFLVFPLRNPK---------------GRIFITNYWKPIYNAGGS--- 700 (1227)
T ss_pred ecccc---cCceeccccccchHhh----hccccceEEEEcCCCc---------------ceEEEEeccceeeccccc---
Confidence 98864 5678999999998887 3455577899998663 899988876554422111
Q ss_pred cCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC-EEEeecccCCCCCCeeccEEEEEeeCC
Q 003975 350 FSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN-KWIRTRTILDTLAPRWNEQYTWDVYDP 427 (782)
Q Consensus 350 ~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-~~~rT~~~~~t~~P~wne~~~f~v~~~ 427 (782)
.+...+..++|.++|.|..|.+|... ...+. |||++|.+++ .++||-....++||.||+...-++..+
T Consensus 701 -------~s~~~~~~pIg~irv~v~~andl~n~---i~g~~~dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v~sk 770 (1227)
T COG5038 701 -------SSKTVYDTPIGAIRVSVRKANDLRNE---IPGGKSDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSK 770 (1227)
T ss_pred -------cceeeecCccceEEEEeehhhccccc---ccCcccccceEEEecceeEEEEecccCccccceeeeEEEEecCC
Confidence 11222357899999999999999854 23456 9999999987 579999999999999999999999999
Q ss_pred CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCC---ceEEEEEeeee----cCCCCCCcCcEEEEEEEEEEc
Q 003975 428 CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETD---RIYTHYYPLLL----LTPSGLKNNGELHLALRFTCT 498 (782)
Q Consensus 428 ~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~---~~~~~w~~L~~----~~~~g~~~~G~i~l~~~~~~~ 498 (782)
.+.+.++++|....+ .|..||.+.|+++++... ..+..-+.=.. ....|.+..|.+.+..+|-+.
T Consensus 771 ~~r~~l~~~~~~~sg------ddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~ 842 (1227)
T COG5038 771 NQRLTLECMDYEESG------DDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPA 842 (1227)
T ss_pred ccEEeeeeecchhcc------ccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEee
Confidence 999999999998876 899999999999998661 11111111111 111234457888888888554
No 4
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=8.9e-26 Score=246.46 Aligned_cols=214 Identities=25% Similarity=0.385 Sum_probs=178.0
Q ss_pred eEEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEeeeecccCCCCCCcccceeEEEecC--CCCCeEEEEEEEccC
Q 003975 201 LYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGN---QLRVTRPSHVRSVNPVWNEEHMFVASE--PFEDLIIVTVEDRIR 275 (782)
Q Consensus 201 ~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~---~~~~T~~~~~~t~nP~wne~f~f~v~~--~~~~~l~i~V~d~~~ 275 (782)
...|.|+|++|++|+..+..|.+||||++++.. .+.+|++.++ ++||.|||+|.|.+.. .....|.+.|||+|.
T Consensus 166 ~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~-tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr 244 (421)
T KOG1028|consen 166 LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRK-TLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR 244 (421)
T ss_pred CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeec-CcCCccccceEeecCHHHhccCEEEEEEEecCC
Confidence 345999999999999999777899999999965 5688999987 9999999999999643 346699999999999
Q ss_pred CCCCceeEEEEEeCCCcccccCCCCCCCCceEEccCCCcccccccccccccccceEEEEEEeccCccccCCCcccCCCCC
Q 003975 276 PGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCLEAGYHVFDESTHFSSDLQ 355 (782)
Q Consensus 276 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~ 355 (782)
++++++||++.++|..+... .....|.+|...... .....|+|.+++|+
T Consensus 245 fsr~~~iGev~~~l~~~~~~-----~~~~~w~~l~~~~~~--------~~~~~gel~~sL~Y------------------ 293 (421)
T KOG1028|consen 245 FSRHDFIGEVILPLGEVDLL-----STTLFWKDLQPSSTD--------SEELAGELLLSLCY------------------ 293 (421)
T ss_pred cccccEEEEEEecCcccccc-----ccceeeeccccccCC--------cccccceEEEEEEe------------------
Confidence 99999999999998887642 226779999876321 11122899999997
Q ss_pred ccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEE--CC---EEEeecccCCCCCCeeccEEEEEeeCC--
Q 003975 356 TSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKY--GN---KWIRTRTILDTLAPRWNEQYTWDVYDP-- 427 (782)
Q Consensus 356 ~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~--~~---~~~rT~~~~~t~~P~wne~~~f~v~~~-- 427 (782)
.|..|.|+|.|++|+||+.++.. +. ||||++.+ ++ .+.+|.+.+++.||+|||.|.|.|...
T Consensus 294 -------~p~~g~ltv~v~kar~L~~~~~~---~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l 363 (421)
T KOG1028|consen 294 -------LPTAGRLTVVVIKARNLKSMDVG---GLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQL 363 (421)
T ss_pred -------ecCCCeEEEEEEEecCCCcccCC---CCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHh
Confidence 34468999999999999998643 55 99999988 33 458999999999999999999988742
Q ss_pred -CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEccc
Q 003975 428 -CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLST 462 (782)
Q Consensus 428 -~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~ 462 (782)
...|.|+|||++.++ .+++||.+.+....
T Consensus 364 ~~~~l~l~V~d~d~~~------~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 364 AEVSLELTVWDHDTLG------SNDLIGRCILGSDS 393 (421)
T ss_pred heeEEEEEEEEccccc------ccceeeEEEecCCC
Confidence 458999999999987 77899999998875
No 5
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.93 E-value=5.5e-26 Score=252.92 Aligned_cols=315 Identities=21% Similarity=0.270 Sum_probs=203.2
Q ss_pred CceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE--eeeecccCCCCCCcccceeEEEecCCCCCeEEEEEEEccCC
Q 003975 199 PKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQL--RVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIRP 276 (782)
Q Consensus 199 p~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~T~~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~ 276 (782)
|+...++|+|++|.+|.+.|.+|.+||||++.+|++. -+...+.+ |+||+|++.|++.+..+.+..+.+.|||+|..
T Consensus 610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~-tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~ 688 (1105)
T KOG1326|consen 610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPN-TLNPVFGKMFELECLLPFEKDLIVEVYDHDLE 688 (1105)
T ss_pred cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcC-CCCcHHHHHHHhhcccchhhcceeEEEEeecc
Confidence 5556799999999999999999999999999999976 45566776 99999999999999999999999999999999
Q ss_pred CCCceeEEEEEeCCC-cccccCCCCCCCCceEEccCCC---------ccc-----ccccccccccccceEEEEEEeccCc
Q 003975 277 GKDEILGRELIPVRN-VPQRHETTKLPDPRWFNLHKPS---------LSA-----EEGAEKNKEKFSSKILISFCLEAGY 341 (782)
Q Consensus 277 ~~d~~iG~~~i~l~~-l~~~~~~~~~~~~~w~~L~~~~---------~~~-----~~g~~~~~~~~~G~i~l~i~~~~~~ 341 (782)
+.|+.||+..++|+. ....+ +.++...+-|...... ..- ..+.. .--+.+.. ..+.+.|..
T Consensus 689 ~~d~~iget~iDLEnR~~T~~-~a~cglaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i~--~P~~~~e~-~~i~~~g~~ 764 (1105)
T KOG1326|consen 689 AQDEKIGETTIDLENRWLTRH-RARCGLAQTYCVSGANIWRDRMDPSQILKEHCQPGGIP--RPYYSYEV-SAIKWKGES 764 (1105)
T ss_pred cccchhhceehhhhhcccCcC-CcccCccceeeeeccccccCccCHHHHHHHhhcccCCC--CCeecCCc-ceEEecChh
Confidence 999999999999976 33332 3344444433322111 000 00000 00000110 111111110
Q ss_pred cccC-------------------------------CCcc----cCCC--------------CC------c-cccccccCc
Q 003975 342 HVFD-------------------------------ESTH----FSSD--------------LQ------T-SSKSLRKGS 365 (782)
Q Consensus 342 ~~~d-------------------------------~~~~----~~~d--------------~~------~-~~~~~~~~~ 365 (782)
...| +..+ ++.+ +- | -...-..+.
T Consensus 765 ~~~d~~~~k~~~~~~L~~~~~r~~~~i~~~~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itpr~~~ 844 (1105)
T KOG1326|consen 765 DIYDEKEAKTIEVPHLGNAWERLALWILMNQGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPLNITPRKPK 844 (1105)
T ss_pred hhhcccccCCCCCcccchHHHHHHHHhhhhcCcCCcccccccccCccccchhhcccchhhhhcccccCCCCCCCCCCChh
Confidence 0000 0000 0000 00 0 000011244
Q ss_pred eeEEEEEEEEeecCCCCccC-CCCCC-CcEEEEEECC---EEEeecccCCCC----CCeeccEEEEEe------------
Q 003975 366 IGTLELGILSAKNLMQMKSK-DGKLT-DAYCVAKYGN---KWIRTRTILDTL----APRWNEQYTWDV------------ 424 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~-~~~~~-dpyv~v~~~~---~~~rT~~~~~t~----~P~wne~~~f~v------------ 424 (782)
...++|.|+...+....|.. .+... |.||+-.+-+ ++.+|.++++++ |-+|.-.|-|.-
T Consensus 845 ~~~lrviiWnt~~v~l~dd~~~ge~~sdIyv~gw~~gdee~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~kk 924 (1105)
T KOG1326|consen 845 KYELRVIIWNTDKVRLNDDEITGEKMSDIYVKGWVLGDEEEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAKK 924 (1105)
T ss_pred heeEEEEEeeccceeecCccceeeeccceEEecccccchhhhcccceeeeeccCCcccceeeecccccchHhhHhhhhhh
Confidence 66899999999888876543 12223 9999999843 468888888765 555544444421
Q ss_pred -----------eCCCceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccc----------------------cCCceEEE
Q 003975 425 -----------YDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTL----------------------ETDRIYTH 471 (782)
Q Consensus 425 -----------~~~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l----------------------~~~~~~~~ 471 (782)
+.| ..|.|+|||+|.++ +|++||...++|+++ ...+.+.+
T Consensus 925 e~~ws~dete~k~p-~rl~iqiWD~d~fs------~Dd~Lg~lELdL~~~~~pa~sa~~c~~~~~~~~~vslFe~k~v~G 997 (1105)
T KOG1326|consen 925 EYSWSLDETEFKIP-ARLIIQIWDNDKFS------KDDFLGALELDLSDMPAPAKSAKKCSLYMKKDKTVSLFEQKTVKG 997 (1105)
T ss_pred hhccccccccccCc-hheEEEecccCccC------hhhhhhheeechhhCcCCCCCHHHCCceeccCcceehhhcccccc
Confidence 111 37999999999987 999999999999986 34566889
Q ss_pred EEeeeecCCCCCCcCcEEEEEEEEEEcchhhhHhhcCCCCCCCCCcccCCchhhHHHHHHHHHHHHHHhhccCCCCChHH
Q 003975 472 YYPLLLLTPSGLKNNGELHLALRFTCTAWVNMVTKYGRPLLPKMHYVQPIPFILIDRLRHQAMQIVAAGLGRAEPPLRRE 551 (782)
Q Consensus 472 w~~L~~~~~~g~~~~G~i~l~~~~~~~~~~~~~~~y~~p~~p~~~~~~p~~~~~~~~~r~~~~~~~~~~~~~~~p~~~~~ 551 (782)
|+|+.........-+|++++++.+ +...++..+|.|.+|-+ -...|||.|++
T Consensus 998 WwP~~a~~~~~~~l~Gkvem~lei---------------lt~~EA~~~PAG~gr~e-------------Pn~Le~P~Rpd 1049 (1105)
T KOG1326|consen 998 WWPCQAEEGDAKVLAGKVEMSLEI---------------LTEKEADERPAGKGRDE-------------PNKLEPPNRPD 1049 (1105)
T ss_pred cceeeecCCCcceecceeeeehhh---------------hhhhhhhhCccccCCCC-------------CCcCCCCCCCC
Confidence 999998643223348999998765 34567777777765544 11456777776
Q ss_pred HH
Q 003975 552 VM 553 (782)
Q Consensus 552 ~~ 553 (782)
.+
T Consensus 1050 ts 1051 (1105)
T KOG1326|consen 1050 TS 1051 (1105)
T ss_pred cc
Confidence 54
No 6
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.92 E-value=4.9e-23 Score=234.31 Aligned_cols=412 Identities=21% Similarity=0.233 Sum_probs=289.1
Q ss_pred ceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCCCCc
Q 003975 38 LMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDD 116 (782)
Q Consensus 38 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~~d~ 116 (782)
..|.+.+++.++++|.... ..+..-++++++.. ..+.|+.++.+.+|.||+++...+.+.....+.+.++|.. ..+
T Consensus 577 n~GI~k~tl~~~~~l~~~~-~~~~~~~a~l~~~~keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~~--~g~ 653 (1227)
T COG5038 577 NTGILKVTLREVKALDELS-SKKDNKSAELYTNAKEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQ--SGK 653 (1227)
T ss_pred CcceeEEEeeccccccCcc-ccccceeEEEEecceEEeccceeeeccCCceeeecceEeccCcceeEEEEecccc--cCc
Confidence 4689999999999997543 22223338888887 4678899999999999999999999887888999999876 467
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEecccCCccccccccCCccccccccccccccccc
Q 003975 117 FVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQADESFAEAWHSDAHNISQKNLANTRSKVY 196 (782)
Q Consensus 117 ~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~rs~~~ 196 (782)
.+|+...+|.++..... ....||++..+ +|+|.++..+.+-.-. ....++.+
T Consensus 654 ~i~~~~~~l~~li~~t~----dt~~~f~~~~~------kg~I~~t~~W~Pi~~~------------------~~~~s~~~ 705 (1227)
T COG5038 654 VIATEGSTLPDLIDRTL----DTFLVFPLRNP------KGRIFITNYWKPIYNA------------------GGSSSKTV 705 (1227)
T ss_pred eeccccccchHhhhccc----cceEEEEcCCC------cceEEEEeccceeecc------------------ccccceee
Confidence 89999999999886532 35689999853 6889998866642110 01123344
Q ss_pred cCCceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEeeeecccCCCCCCcccceeEEEecCCCCCeEEEEEEEccC
Q 003975 197 FSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGN-QLRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIR 275 (782)
Q Consensus 197 ~~p~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~-~~~~T~~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~ 275 (782)
.....|.++|.|..|.+|......+++|||+++.+++ .++||-.... +.||.||+....++..+ .+.+.+.+.|...
T Consensus 706 ~~~pIg~irv~v~~andl~n~i~g~~~dPya~v~~n~~~k~rti~~~~-~~npiw~~i~Yv~v~sk-~~r~~l~~~~~~~ 783 (1227)
T COG5038 706 YDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVNNLVKYRTIYGSS-TLNPIWNEILYVPVTSK-NQRLTLECMDYEE 783 (1227)
T ss_pred ecCccceEEEEeehhhcccccccCcccccceEEEecceeEEEEecccC-ccccceeeeEEEEecCC-ccEEeeeeecchh
Confidence 5677899999999999999888899999999999988 5677777665 99999999999888776 5668999999999
Q ss_pred CCCCceeEEEEEeCCCcccccCCCCCCCCc---------------------------eEEccCCCcc-------cccccc
Q 003975 276 PGKDEILGRELIPVRNVPQRHETTKLPDPR---------------------------WFNLHKPSLS-------AEEGAE 321 (782)
Q Consensus 276 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~---------------------------w~~L~~~~~~-------~~~g~~ 321 (782)
.+.|..+|++.++++++..+. ++..... .|+....... ...++.
T Consensus 784 sgddr~lg~~~i~vsn~~~k~--~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~ 861 (1227)
T COG5038 784 SGDDRNLGEVNINVSNVSKKD--EDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEK 861 (1227)
T ss_pred ccccceeceeeeeeeeeeecC--CCcceEEeecCcccccccccccCCcceeEEEEEEEEeecccCChHHhcchhhhhhHH
Confidence 999999999999999988742 1111110 0110000000 000000
Q ss_pred c--------------------------------cc--------------ccccceE--------------EEEEEecc-C
Q 003975 322 K--------------------------------NK--------------EKFSSKI--------------LISFCLEA-G 340 (782)
Q Consensus 322 ~--------------------------------~~--------------~~~~G~i--------------~l~i~~~~-~ 340 (782)
+ .+ .-.+|-+ .+.+.++. +
T Consensus 862 ~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~ 941 (1227)
T COG5038 862 RKSEKRKSALDEKTISLVDKEDSVEESIEVEELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDAS 941 (1227)
T ss_pred HHhhhhhcccCccccchhccccchhcceeeccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCC
Confidence 0 00 0001111 12222222 2
Q ss_pred ccccCCCc-------------------cc--------C----CC-------------------------CCccccc----
Q 003975 341 YHVFDEST-------------------HF--------S----SD-------------------------LQTSSKS---- 360 (782)
Q Consensus 341 ~~~~d~~~-------------------~~--------~----~d-------------------------~~~~~~~---- 360 (782)
|+.+-.+. .+ . +| +...++.
T Consensus 942 ~~~i~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~ 1021 (1227)
T COG5038 942 HPQIVSSKAPTRGERNGESGDTFIRELEYSETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQV 1021 (1227)
T ss_pred CceeeccCCcccccccchhhhhhhhhhccceEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEE
Confidence 22110000 00 0 00 0000000
Q ss_pred cc------------cCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCE-EEeecccCCCCCCeeccEEEEEeeC
Q 003975 361 LR------------KGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNK-WIRTRTILDTLAPRWNEQYTWDVYD 426 (782)
Q Consensus 361 ~~------------~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~-~~rT~~~~~t~~P~wne~~~f~v~~ 426 (782)
.+ -.+.|.|.|.+..|.||+..|. +|. ||||++.++++ .++|+++++|+||+|||.+..+|..
T Consensus 1022 ~~tPv~~~l~~~emv~nsG~l~I~~~~~~nl~~~d~---ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~ 1098 (1227)
T COG5038 1022 SYTPVPVKLPPVEMVENSGYLTIMLRSGENLPSSDE---NGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLN 1098 (1227)
T ss_pred EEeecccccCcceeecccCcEEEEEeccCCCccccc---CCCCCceEEEEecceecccccchhccCCCCccccceEeeec
Confidence 00 1248999999999999998764 475 99999999887 7999999999999999999999985
Q ss_pred -CCceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 427 -PCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 427 -~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
..+.++|.|+|+|.- .+++.||++.|+|+.+..+..+..-.+|.... . ....|.++....|
T Consensus 1099 r~~D~~~i~v~Dwd~~------~knd~lg~~~idL~~l~~~~~~n~~i~ldgk~-~-~~~~g~~~~~~~~ 1160 (1227)
T COG5038 1099 RVKDVLTINVNDWDSG------EKNDLLGTAEIDLSKLEPGGTTNSNIPLDGKT-F-IVLDGTLHPGFNF 1160 (1227)
T ss_pred cccceEEEEEeecccC------CCccccccccccHhhcCcCCccceeeeccCcc-e-EecccEeecceec
Confidence 467999999999963 48999999999999999999888888887533 1 1224666666544
No 7
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.89 E-value=2.6e-22 Score=216.69 Aligned_cols=251 Identities=22% Similarity=0.298 Sum_probs=200.0
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCCCCcee
Q 003975 40 HYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDFV 118 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~~d~~l 118 (782)
..|.|+|.+|+||++.+..|.+||||.|.++. ...||.++.+++.|-|.|+|+|.+... -..|.|.|||.|..+|+.|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~-F~~l~fYv~D~d~~~D~~I 83 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRT-FRYLSFYVWDRDLKRDDII 83 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcc-eeeEEEEEecccccccccc
Confidence 46899999999999999999999999999987 478999999999999999999999753 5779999999993399999
Q ss_pred EEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEecccCCccccccccCCccccccccccccccccccC
Q 003975 119 GRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQADESFAEAWHSDAHNISQKNLANTRSKVYFS 198 (782)
Q Consensus 119 G~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~rs~~~~~ 198 (782)
|.+.+.-.+|.... ..+.|+.|..-....++.|+|++.+.+.....
T Consensus 84 GKvai~re~l~~~~-----~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~----------------------------- 129 (800)
T KOG2059|consen 84 GKVAIKREDLHMYP-----GKDTWFSLQPVDPDSEVQGKVHLELALTEAIQ----------------------------- 129 (800)
T ss_pred ceeeeeHHHHhhCC-----CCccceeccccCCChhhceeEEEEEEeccccC-----------------------------
Confidence 99999999987653 26789999987666668999999987753211
Q ss_pred CceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE----eeeecccCCCCCCcccceeEEEecCC-------------
Q 003975 199 PKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQL----RVTRPSHVRSVNPVWNEEHMFVASEP------------- 261 (782)
Q Consensus 199 p~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~----~~T~~~~~~t~nP~wne~f~f~v~~~------------- 261 (782)
..-+.+.+++++++.+... +.+|||+++...+.. .+|++.++ |.+|.|+|.|.|.+...
T Consensus 130 --~~~~~c~~L~~r~~~P~~~-~~~dp~~~v~~~g~~~~~~~~T~~~kk-t~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~ 205 (800)
T KOG2059|consen 130 --SSGLVCHVLKTRQGLPIIN-GQCDPFARVTLCGPSKLKEKKTKVKKK-TTNPQFDEVFYFEVTREESYSKKSLFMPEE 205 (800)
T ss_pred --CCcchhhhhhhcccCceeC-CCCCcceEEeecccchhhccccceeee-ccCcchhhheeeeeccccccccchhcCccc
Confidence 0115566677777777664 449999999997643 58888887 99999999999987644
Q ss_pred --CCCeEEEEEEE-ccCCCCCceeEEEEEeCCCcccccCCCCCCCCceEEccCCCcccccccccccccccceEEEEEEec
Q 003975 262 --FEDLIIVTVED-RIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCLE 338 (782)
Q Consensus 262 --~~~~l~i~V~d-~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~~ 338 (782)
....|++++|+ .+....+.|+|++.+++..+.. ......||-|...+ .|.+..++...|.+++.+++.
T Consensus 206 e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~-----~s~p~~W~~Lqp~~----~g~~~~~~~~lGslrl~v~y~ 276 (800)
T KOG2059|consen 206 EDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQ-----KSSPAAWYYLQPRP----NGEKSSDGGDLGSLRLNVTYT 276 (800)
T ss_pred CCceeeEEEeeccchhhhhhhhhceeEEeehhhhhh-----ccCccceEEEecCC----CcccCCCCCCccceeeeEEee
Confidence 23367888898 4556679999999999988763 23378899998774 344444555668888888764
No 8
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.88 E-value=5.1e-22 Score=186.87 Aligned_cols=149 Identities=56% Similarity=0.949 Sum_probs=128.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeeecccCCCCCCcccceeEEEecCCCCCeEEEEEEEccCCCCCceeE
Q 003975 204 LRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIRPGKDEILG 283 (782)
Q Consensus 204 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d~~iG 283 (782)
|+|+|++|++|++.+.+|.+||||++.++++.++|+++.+++.||+|||.|.|.+.++..+.+.|+|+|++..+++++||
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG 81 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLG 81 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEE
Confidence 89999999999999999999999999999999999998754799999999999998777789999999999888899999
Q ss_pred EEEEeCCCcccccCCCCCCCCceEEccCCCcccccccccccccccceEEEEEEeccCccccCCCcccCCCCCc
Q 003975 284 RELIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCLEAGYHVFDESTHFSSDLQT 356 (782)
Q Consensus 284 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~ 356 (782)
++.++|+++.... +......+||+|.+..... .+++..+.+|+|++++++.+.|++.+++.+|++|++|
T Consensus 82 ~v~i~L~~l~~~~-~~~~~~~~W~~L~~~~~~~---~~~k~~k~~g~l~l~i~~~~~~~~~~~~~~~~~~~~~ 150 (150)
T cd04019 82 RAVIPLNDIERRV-DDRPVPSRWFSLERPGGAM---EQKKKRKFASRIHLRLCLDGGYHVLDESTHYSSDLRP 150 (150)
T ss_pred EEEEEHHHCcccC-CCCccCCceEECcCCCCcc---cccccCcccccEEEEEEecCcceEeecccccccCCCC
Confidence 9999999987532 3445689999998764100 0122346689999999999999999999999999875
No 9
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.88 E-value=5e-22 Score=214.47 Aligned_cols=251 Identities=18% Similarity=0.273 Sum_probs=198.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEeeeecccCCCCCCcccceeEEEecCCCCCeEEEEEEEccCCCCCce
Q 003975 203 YLRVFVFEAQDLVPSDKGRAPDACVRIQLGN-QLRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIRPGKDEI 281 (782)
Q Consensus 203 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~-~~~~T~~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d~~ 281 (782)
.|.|.|.+|+||++.+..|..||||.|.+.+ ...||.++.+ ++.|.|.|.|.|.+...+ ..|.|-|||+| .++|+.
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~k-sL~PF~gEe~~~~iP~~F-~~l~fYv~D~d-~~~D~~ 82 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEK-SLCPFFGEEFYFEIPRTF-RYLSFYVWDRD-LKRDDI 82 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhh-hcCCccccceEEecCcce-eeEEEEEeccc-cccccc
Confidence 4899999999999999999999999999987 5689999997 999999999999996543 46999999999 899999
Q ss_pred eEEEEEeCCCcccccCCCCCCCCceEEccCCCcccccccccccccccceEEEEEEeccCccccCCCcccCCCCCcccccc
Q 003975 282 LGRELIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCLEAGYHVFDESTHFSSDLQTSSKSL 361 (782)
Q Consensus 282 iG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~ 361 (782)
||.+.|.-.++.. .+....|+.|..-+. +.+..|+|++++.+..+..
T Consensus 83 IGKvai~re~l~~-----~~~~d~W~~L~~VD~---------dsEVQG~v~l~l~~~e~~~------------------- 129 (800)
T KOG2059|consen 83 IGKVAIKREDLHM-----YPGKDTWFSLQPVDP---------DSEVQGKVHLELALTEAIQ------------------- 129 (800)
T ss_pred cceeeeeHHHHhh-----CCCCccceeccccCC---------ChhhceeEEEEEEeccccC-------------------
Confidence 9999999888764 336889999987753 4567899999998744210
Q ss_pred ccCceeEEEEEEEEeecCCCCccCCCCCCCcEEEEEECCEE----EeecccCCCCCCeeccEEEEEeeCC----------
Q 003975 362 RKGSIGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKW----IRTRTILDTLAPRWNEQYTWDVYDP---------- 427 (782)
Q Consensus 362 ~~~~~g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~~~----~rT~~~~~t~~P~wne~~~f~v~~~---------- 427 (782)
..-+...++.++++.+.+ +.+.||||++...+.. .+|++.++|.+|.|||.|.|.+...
T Consensus 130 ----~~~~~c~~L~~r~~~P~~---~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~ 202 (800)
T KOG2059|consen 130 ----SSGLVCHVLKTRQGLPII---NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFM 202 (800)
T ss_pred ----CCcchhhhhhhcccCcee---CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcC
Confidence 113344555566665543 2345999999986644 5999999999999999999988533
Q ss_pred ------CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCC-C---CCcCcEEEEEEEEEE
Q 003975 428 ------CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPS-G---LKNNGELHLALRFTC 497 (782)
Q Consensus 428 ------~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~-g---~~~~G~i~l~~~~~~ 497 (782)
-..|.+.+||+..+. ..++|+|.+++++..+........||-|.....+ + ..-.|.+++.+.++.
T Consensus 203 ~~~e~~~l~irv~lW~~~~~~-----~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~ 277 (800)
T KOG2059|consen 203 PEEEDDMLEIRVDLWNDLNLV-----INDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTE 277 (800)
T ss_pred cccCCceeeEEEeeccchhhh-----hhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeee
Confidence 237899999954332 2699999999999999877778999999975441 1 122688999998876
Q ss_pred cchh
Q 003975 498 TAWV 501 (782)
Q Consensus 498 ~~~~ 501 (782)
+..+
T Consensus 278 D~Vl 281 (800)
T KOG2059|consen 278 DHVL 281 (800)
T ss_pred ceec
Confidence 5543
No 10
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.87 E-value=2e-21 Score=176.19 Aligned_cols=121 Identities=62% Similarity=1.053 Sum_probs=105.0
Q ss_pred EEEEEEEEeec---CCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCC
Q 003975 368 TLELGILSAKN---LMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNG 443 (782)
Q Consensus 368 ~l~v~v~~a~~---L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~ 443 (782)
.|+|+|++|+| |+.+| +.|+ ||||+|++|+++.||++++++.||+|||+|.|.+.++...|.|+|||++.++.
T Consensus 1 ~L~v~v~~A~~~~~l~~~d---~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~ 77 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKD---GRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHW 77 (126)
T ss_pred CeEEEEEEeECCccccccc---cCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccc
Confidence 38899999999 66654 4477 99999999999999999999999999999999999888899999999987521
Q ss_pred CCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEE
Q 003975 444 SKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHL 491 (782)
Q Consensus 444 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l 491 (782)
.+...+|++||++.|+|+.+..+....+||+|....+++.++.|+|++
T Consensus 78 ~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 78 KEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred cccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 111237999999999999999999999999999877777788899986
No 11
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.87 E-value=2.6e-21 Score=174.28 Aligned_cols=117 Identities=23% Similarity=0.415 Sum_probs=102.3
Q ss_pred eEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCC-CCCCeeccEEEEEeeCCCceEEEEEEeCCcCCCC
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILD-TLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGS 444 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~-t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~ 444 (782)
|.|+|+|++|++|+..+ .|+ ||||+|.+|++++||+++.+ +.||+|||+|.|++.+....|.|+|||+|.++
T Consensus 2 g~L~v~v~~Ak~l~~~~----~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~-- 75 (121)
T cd04016 2 GRLSITVVQAKLVKNYG----LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFT-- 75 (121)
T ss_pred cEEEEEEEEccCCCcCC----CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCc--
Confidence 79999999999987653 256 99999999999999999976 79999999999999876678999999999887
Q ss_pred CCCCCCCccEEEEEEcc-cccCCceEEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 445 KDDAKDQRIGKVRIRLS-TLETDRIYTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 445 ~~~~~d~~lG~~~i~l~-~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
+|++||.+.|+|. .+..++..+.||+|... ++..+.|+|+|+++|
T Consensus 76 ----~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~--~~~~~~g~i~l~l~y 121 (121)
T cd04016 76 ----MDERIAWTHITIPESVFNGETLDDWYSLSGK--QGEDKEGMINLVFSY 121 (121)
T ss_pred ----CCceEEEEEEECchhccCCCCccccEeCcCc--cCCCCceEEEEEEeC
Confidence 8999999999996 57888888999999753 344567999999864
No 12
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.85 E-value=1.2e-20 Score=170.04 Aligned_cols=117 Identities=21% Similarity=0.323 Sum_probs=102.0
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccC-CCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCce
Q 003975 40 HYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEK-NQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDDF 117 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~-t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~~ 117 (782)
|.|.|+|++|++|+..+ .|++||||++++++++.+|+++.+ +.||+|||+|.|.+.+. ...|.|+|||+|.+ +|++
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~~dd~ 79 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFTMDER 79 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCcCCce
Confidence 78999999999988777 799999999999999999999876 78999999999999753 46799999999998 8999
Q ss_pred eEEEEEEcc-ccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEe
Q 003975 118 VGRVSLDLS-QVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWM 164 (782)
Q Consensus 118 lG~~~v~l~-~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~ 164 (782)
||++.+++. .+..+. ..++||+|.+.++.. ..|+|+++++|
T Consensus 80 iG~~~i~l~~~~~~g~-----~~~~W~~L~~~~~~~-~~g~i~l~l~y 121 (121)
T cd04016 80 IAWTHITIPESVFNGE-----TLDDWYSLSGKQGED-KEGMINLVFSY 121 (121)
T ss_pred EEEEEEECchhccCCC-----CccccEeCcCccCCC-CceEEEEEEeC
Confidence 999999996 455442 367999999877654 67999999875
No 13
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.85 E-value=1.3e-20 Score=171.27 Aligned_cols=121 Identities=72% Similarity=1.147 Sum_probs=107.9
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCCCCceeEE
Q 003975 41 YLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDFVGR 120 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~~d~~lG~ 120 (782)
+|.|+|++|++|+.. .+||||++.+++++.+|+++++|.||+|||+|.|.+.......|.|+|||++..++++||+
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~ 76 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGG 76 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeee
Confidence 489999999999887 7899999999999999999999999999999999987766789999999999778999999
Q ss_pred EEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEecc
Q 003975 121 VSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGT 166 (782)
Q Consensus 121 ~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~ 166 (782)
+.++++++..+...++....+||+|++..+. ...|+|++++||++
T Consensus 77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~-~~~G~i~l~~~~~~ 121 (121)
T cd08378 77 VCFDLSEVPTRVPPDSPLAPQWYRLEDKKGG-RVGGELMLAVWFGT 121 (121)
T ss_pred EEEEhHhCcCCCCCCCCCCcceEEccCCCCC-ccceEEEEEEEecC
Confidence 9999999987655555567899999987763 37899999999973
No 14
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.83 E-value=3.4e-20 Score=170.52 Aligned_cols=116 Identities=22% Similarity=0.393 Sum_probs=100.1
Q ss_pred EEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeC------CCceEEEEEEeCCcC
Q 003975 369 LELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYD------PCTVITIGVFDNCYV 441 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~------~~~~l~i~v~d~~~~ 441 (782)
++|+|++|+||+.++. .|. ||||+|+++++++||++++++.||+|||.|.|.+.. ....|.|+|||++.+
T Consensus 1 ~~V~V~~A~~L~~~d~---~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCKGK---SGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCCCC---CcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 5799999999998753 356 999999999999999999999999999999999976 367899999999987
Q ss_pred CCCCCCCCCCccEEEEEEccccc--CCceEEEEEeeeecCCCCCCcCcEEEEEE
Q 003975 442 NGSKDDAKDQRIGKVRIRLSTLE--TDRIYTHYYPLLLLTPSGLKNNGELHLAL 493 (782)
Q Consensus 442 ~~~~~~~~d~~lG~~~i~l~~l~--~~~~~~~w~~L~~~~~~g~~~~G~i~l~~ 493 (782)
+ +|++||++.|+|+++. .+.....||+|........+..|+|+|++
T Consensus 78 ~------~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 78 G------LDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred C------CCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEe
Confidence 6 7999999999999987 56778899999864433334579999986
No 15
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.83 E-value=5.9e-20 Score=168.96 Aligned_cols=118 Identities=31% Similarity=0.518 Sum_probs=102.2
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEecc-----CCCCeEEEEEEeCCCC-CC
Q 003975 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKER-----LQSSLLEVTVKDKDIG-KD 115 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~-----~~~~~L~i~V~d~d~~-~d 115 (782)
++|+|++|+||+..+..|.+||||+|++++++++|++++++.||+|||+|.|.+.. .....|.|+|||++.. +|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 47999999999999999999999999999999999999999999999999999866 3567899999999988 89
Q ss_pred ceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCc-ccceEEEEEE
Q 003975 116 DFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQ-TTKGEIMLAV 162 (782)
Q Consensus 116 ~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~-~~~G~l~l~~ 162 (782)
++||++.++|.++.... .....+||+|.+..+.. ...|+|++++
T Consensus 81 ~~iG~~~i~l~~l~~~~---~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 81 KFLGQVSIPLNDLDEDK---GRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred ceeEEEEEEHHHhhccC---CCcccEEEECcCCCCCCccccceEEEEe
Confidence 99999999999997422 12367999998765432 3689999986
No 16
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.82 E-value=2e-19 Score=171.23 Aligned_cols=122 Identities=29% Similarity=0.399 Sum_probs=106.8
Q ss_pred eEEEEEEEEeecCCCCccC---------------------------CCCCC-CcEEEEEECCEE-EeecccCCCCCCeec
Q 003975 367 GTLELGILSAKNLMQMKSK---------------------------DGKLT-DAYCVAKYGNKW-IRTRTILDTLAPRWN 417 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~---------------------------~~~~~-dpyv~v~~~~~~-~rT~~~~~t~~P~wn 417 (782)
|.|.|+|++|++|+++|.. .+.|+ ||||+|++++.. .||++++++.||+||
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~Wn 86 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWN 86 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccc
Confidence 8999999999999999831 13566 999999998754 799999999999999
Q ss_pred cEEEEEeeCCCceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 418 EQYTWDVYDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 418 e~~~f~v~~~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
|.|.|.+.++.+.|.|+|+|++.+ ++++||++.|+++++..+...++||+|.....++.+..|+|+++++|
T Consensus 87 E~F~~~~~~~~~~l~~~V~d~d~~-------~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 87 ESFHIYCAHYASHVEFTVKDNDVV-------GAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred eEEEEEccCCCCEEEEEEEeCCCc-------CCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 999999988888999999999876 46899999999999999988999999987555555557899999987
No 17
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.82 E-value=3.1e-19 Score=162.98 Aligned_cols=118 Identities=27% Similarity=0.362 Sum_probs=104.4
Q ss_pred EEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC-EEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCCCC
Q 003975 368 TLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN-KWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGSK 445 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~~ 445 (782)
.|+|+|++|+||+..|.. |. ||||++++++ +.++|+++.++.||+|||.|.|.+.++...|.|+|||++.++
T Consensus 1 ~L~v~v~~a~~L~~~d~~---g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~--- 74 (121)
T cd04042 1 QLDIHLKEGRNLAARDRG---GTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGL--- 74 (121)
T ss_pred CeEEEEEEeeCCCCcCCC---CCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCC---
Confidence 378999999999988643 56 9999999987 679999999999999999999999887889999999999876
Q ss_pred CCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEEE
Q 003975 446 DDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRFT 496 (782)
Q Consensus 446 ~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~~ 496 (782)
+|++||++.++|+++..+.....|++|.+.. +.+..|+|++.++|+
T Consensus 75 ---~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~G~l~l~~~~~ 120 (121)
T cd04042 75 ---TDDFMGSAFVDLSTLELNKPTEVKLKLEDPN--SDEDLGYISLVVTLT 120 (121)
T ss_pred ---CCcceEEEEEEHHHcCCCCCeEEEEECCCCC--CccCceEEEEEEEEC
Confidence 8999999999999999998899999997532 335689999999874
No 18
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=99.81 E-value=4.3e-20 Score=202.19 Aligned_cols=209 Identities=19% Similarity=0.288 Sum_probs=157.6
Q ss_pred CCCceeehhhchhhHHHHHH-HH-H--HHHHHhhccccccCchhhHHHHHHHHHHHHccchhHHHHHHHHHHHHH----h
Q 003975 559 VDYHMWSLRKCKANFQRIVE-LL-S--AICRWFNDICTWRNPVETALLHVLFLTLVFYPELILPTIFLYLFLIGM----W 630 (782)
Q Consensus 559 ~~~~~~s~~~~~~n~~rl~~-~~-~--~~~~~~~~~~~W~~p~~t~~~~~~~~~~~~~~~l~~p~~~l~l~~~~~----~ 630 (782)
++...||..++++|++|+.. ++ . .+.+++.++.+|++|.||++||++|++ +|+.++++|+++..|+++++ +
T Consensus 83 a~~e~FspdkLRa~lERlY~tv~v~~~~~~khi~RLrSW~eprRT~~fc~vYf~-aW~~dll~p~~~~~L~~li~~P~~r 161 (642)
T PF11696_consen 83 AEDEEFSPDKLRANLERLYMTVVVGLAAFIKHIARLRSWREPRRTAAFCAVYFI-AWLLDLLVPAFFAFLIALILSPPAR 161 (642)
T ss_pred cccccCChHHHHHHhHhheeehHHHHHHHHHHHHHhhhhcccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCcccc
Confidence 67889999999999999954 32 2 899999999999999999999999999 68889999999988887777 8
Q ss_pred hcccCCCCCCCCCcc-----------------cchhhhcchhhhhccc----------------------CCCccc-ccc
Q 003975 631 NYRLRPRHPPHVDAK-----------------LSQAINAHLDELVKEF----------------------DTSDEL-DEE 670 (782)
Q Consensus 631 ~~~~~~~~~~~~~~~-----------------~s~~~~~~~~~~~~~~----------------------~~~~~~-~~e 670 (782)
.++|+|.+++.+|.+ ++++++.+++|.+|+| .++++. +++
T Consensus 162 ~~lFPpap~alvd~~tgg~qkP~aGvLgs~dS~TGAPE~~KGEAvEqEAsNfV~siasvav~saaGK~~q~~p~~~~~~~ 241 (642)
T PF11696_consen 162 SILFPPAPPALVDSKTGGVQKPKAGVLGSDDSVTGAPENHKGEAVEQEASNFVNSIASVAVSSAAGKHPQGDPDDDPEED 241 (642)
T ss_pred cccCCCCCcccccCCCCCccccccccccccccccCCCccccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccCCccC
Confidence 888998887777644 4456677888998888 111221 111
Q ss_pred cCCCCCCC------------------ChhHHHH-HHHHHhhhhhhHHHHHHHHhhHHHHHHhcccccChh--------hH
Q 003975 671 FDSFPTSR------------------PSDTVRM-RYERLRSVGGQLQTMVGDLASQVERAQAILCWRDLR--------AT 723 (782)
Q Consensus 671 ~~~~~~~~------------------~~~~l~~-~~~~~~~~~~~vq~~l~~~a~~~e~~~n~~~w~~p~--------~s 723 (782)
..+++... ..+..++ .-.++-..+..+|++|++|+|.+||+-|+|+.+.|| +.
T Consensus 242 ~~pd~~~v~~~~adak~~a~g~~~~~~~DkTk~Pm~~~v~~~~~p~mh~l~di~Dt~ERfaNaLSPTpPFp~~~~RlRLa 321 (642)
T PF11696_consen 242 SEPDPTDVATKAADAKDKAAGEKPKPSHDKTKQPMKEAVWKKMRPIMHMLGDITDTWERFANALSPTPPFPRHTPRLRLA 321 (642)
T ss_pred CCCChhhhhHhhhhhhhhccCCCCCCccchhhchHHHHHHHhhhhHHHHHhhHHHHHHHHhhccCCCCCCCCccHHHHHH
Confidence 11111100 0011111 122344568889999999999999999999999999 55
Q ss_pred HHHHHHHHHHHHHHhhchhhhhhheeeeecccCCCCCCCCCCchhhhhcc
Q 003975 724 FIFLIFSFIWAVFSYVTPFEVVAVLIGLYMLRHPRFRSKMPSVPVNFFKS 773 (782)
Q Consensus 724 ~~~~~~l~~~~~~~~~vP~r~i~l~~g~~~~r~P~~~~~~~~~~~~~~~r 773 (782)
.+++.+++++.++..++-.|.+.|++|+. +|.+++....++||+|
T Consensus 322 ~~l~p~~l~Sl~~ssy~~~K~~tF~~Gf~-----FFGdPiI~r~~~~Lnr 366 (642)
T PF11696_consen 322 AILAPLLLASLFVSSYMFVKGTTFGFGFG-----FFGDPIITRGIDYLNR 366 (642)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhhHH-----hhccHHHHHHHHHHhc
Confidence 67778888888888999999999999999 6776665555555554
No 19
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.81 E-value=4e-19 Score=161.55 Aligned_cols=118 Identities=25% Similarity=0.451 Sum_probs=101.9
Q ss_pred EEEEEEEeecCCCCccCCCCCC-CcEEEEEECCE-EEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCCCCC
Q 003975 369 LELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNK-WIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGSKD 446 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~-~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~~~ 446 (782)
|+|.|++|+||++++. ..|. ||||.|.++++ .++|+++++|.||+|||.|.|.+.+....|.|.|||++.++
T Consensus 2 l~v~v~~a~~L~~~~~--~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~---- 75 (121)
T cd08401 2 LKIKIGEAKNLPPRSG--PNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLR---- 75 (121)
T ss_pred eEEEEEEccCCCCCCC--CCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCC----
Confidence 6799999999998752 2356 99999999875 68999999999999999999999876689999999999876
Q ss_pred CCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 447 DAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 447 ~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
+|++||++.++|+++..+...+.||+|......+ +..|+|||+++|
T Consensus 76 --~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~-~~~G~i~l~~~~ 121 (121)
T cd08401 76 --RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADS-EVQGKVHLELRL 121 (121)
T ss_pred --CCceEEEEEEEHHHccCCCCcEeeEEEEccCCCC-cccEEEEEEEEC
Confidence 8999999999999999888889999998654433 346999999864
No 20
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.81 E-value=4e-19 Score=161.18 Aligned_cols=113 Identities=27% Similarity=0.361 Sum_probs=98.1
Q ss_pred EEEEEEEeeC---CCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-----
Q 003975 42 LCVNVVKARN---LPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG----- 113 (782)
Q Consensus 42 L~V~v~~a~~---L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~----- 113 (782)
|.|+|++|++ |+.+|..|++||||++++++++.||+++++++||+|||+|.|.+.+. ...|.|+|||++..
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~-~~~l~v~V~d~d~~~~~~~ 80 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP-CTVLTVGVFDNSQSHWKEA 80 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCC-CCEEEEEEEECCCcccccc
Confidence 7899999999 88999999999999999999999999999999999999999999764 46899999999875
Q ss_pred --CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCc-ccceEEEE
Q 003975 114 --KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQ-TTKGEIML 160 (782)
Q Consensus 114 --~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~-~~~G~l~l 160 (782)
+|++||++.++|+++..+. ....||+|.+.++.. +..|+|.+
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~~-----~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 81 VQPDVLIGKVRIRLSTLEDDR-----VYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred CCCCceEEEEEEEHHHccCCC-----EEeeEEEeEeCCCCCccCCcEEEe
Confidence 8999999999999998753 367899999765322 24677764
No 21
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.81 E-value=4.2e-19 Score=163.53 Aligned_cols=120 Identities=33% Similarity=0.440 Sum_probs=103.7
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccC---CCCeEEEEEEeCCCC--CCc
Q 003975 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERL---QSSLLEVTVKDKDIG--KDD 116 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~---~~~~L~i~V~d~d~~--~d~ 116 (782)
|.|+|++|++|+..+..|.+||||+|.+++++++|++++++.||+|||+|.|.+.+. ....|.|+|||++.. +++
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~ 81 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRS 81 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCC
Confidence 799999999999999889999999999999999999999999999999999998643 246899999999876 799
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEec
Q 003975 117 FVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMG 165 (782)
Q Consensus 117 ~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~ 165 (782)
+||++.++++++... +....+||+|+.........|+|++++++.
T Consensus 82 ~lG~v~i~l~~l~~~----~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 82 FLGRVRISGTSFVPP----SEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred eeeEEEEcHHHcCCC----CCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 999999999999732 234679999997643333689999999874
No 22
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.81 E-value=6e-19 Score=166.04 Aligned_cols=125 Identities=29% Similarity=0.471 Sum_probs=107.9
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccC-CCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCcee
Q 003975 41 YLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEK-NQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDDFV 118 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~-t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~~l 118 (782)
.|.|+|++|++|+..|..|.+||||++.+++++.+|+++.+ |.||+|||+|.|.+.+.....|.|+|+|++.. +|++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 38999999999999999999999999999999999999977 69999999999999766567899999999987 89999
Q ss_pred EEEEEEccccCCCCCCCCCCCCEEEEeccCCC-----C-cccceEEEEEEEecc
Q 003975 119 GRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKG-----D-QTTKGEIMLAVWMGT 166 (782)
Q Consensus 119 G~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g-----~-~~~~G~l~l~~~~~~ 166 (782)
|++.++|.++..+.. ......+||+|++..+ + ....|+|++.+.+..
T Consensus 81 G~v~i~L~~l~~~~~-~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 81 GRAVIPLNDIERRVD-DRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred EEEEEEHHHCcccCC-CCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 999999999976421 2335789999998764 1 136799999998874
No 23
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.80 E-value=7.4e-19 Score=162.96 Aligned_cols=124 Identities=27% Similarity=0.435 Sum_probs=106.0
Q ss_pred ccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-C
Q 003975 36 VELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-K 114 (782)
Q Consensus 36 ~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~ 114 (782)
.+..|.|+|+|++|++|+..|..|.+||||++.++++.++|+++++|.||.|||+|.|.+.+.....|.|+|||++.. +
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~ 90 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSP 90 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCC
Confidence 456799999999999999999999999999999999999999999999999999999999877678999999999988 8
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEe
Q 003975 115 DDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWM 164 (782)
Q Consensus 115 d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~ 164 (782)
|++||++.+++.++............+|..|.. . ..|+|++++.+
T Consensus 91 d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~---~--~~g~i~l~~~~ 135 (136)
T cd08375 91 DDFLGRTEIRVADILKETKESKGPITKRLLLHE---V--PTGEVVVKLDL 135 (136)
T ss_pred CCeeEEEEEEHHHhccccccCCCcEEEEecccc---c--cceeEEEEEEe
Confidence 999999999999998733222223446666642 2 37999999865
No 24
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.80 E-value=1.3e-19 Score=165.62 Aligned_cols=116 Identities=30% Similarity=0.460 Sum_probs=97.2
Q ss_pred ceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCC
Q 003975 365 SIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNG 443 (782)
Q Consensus 365 ~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~ 443 (782)
..|.|+|.|.+|.||...|.. ++ ||||++.+|+++.||+++++++||+|||.|+|.+.++...|.++|||+|.++
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~---~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs- 79 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFL---GSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFS- 79 (168)
T ss_pred cceEEEEEEEeecCeeeeccc---cCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCC-
Confidence 469999999999999988753 45 9999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEE
Q 003975 444 SKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLAL 493 (782)
Q Consensus 444 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~ 493 (782)
.||++|.|.|+|..+..... .|+ |....+.|.. -|++.++.
T Consensus 80 -----~dD~mG~A~I~l~p~~~~~~--~~~-l~~~~~~gt~-~~~v~~s~ 120 (168)
T KOG1030|consen 80 -----SDDFMGEATIPLKPLLEAQK--MDY-LKLELLTGTA-IGKVLLSR 120 (168)
T ss_pred -----cccccceeeeccHHHHHHhh--hhc-cccccCCCcE-eeEEEecc
Confidence 99999999999999977653 344 4433333332 25555554
No 25
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.80 E-value=8.9e-19 Score=159.93 Aligned_cols=118 Identities=36% Similarity=0.546 Sum_probs=105.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCcee
Q 003975 41 YLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDDFV 118 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~~l 118 (782)
+|.|+|++|++|+..|..|.+||||++.+++ ..++|+++.+|.||+|||+|.|.+... ...|.|+|||++.. +|++|
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~~i 79 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDDFM 79 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCcce
Confidence 4899999999999999999999999999988 678999999999999999999998765 57899999999998 99999
Q ss_pred EEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEec
Q 003975 119 GRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMG 165 (782)
Q Consensus 119 G~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~ 165 (782)
|++.+++.++..+.+ ...|++|.+.++.. ..|+|++.+.+.
T Consensus 80 G~~~~~l~~l~~~~~-----~~~~~~L~~~~~~~-~~G~l~l~~~~~ 120 (121)
T cd04042 80 GSAFVDLSTLELNKP-----TEVKLKLEDPNSDE-DLGYISLVVTLT 120 (121)
T ss_pred EEEEEEHHHcCCCCC-----eEEEEECCCCCCcc-CceEEEEEEEEC
Confidence 999999999987543 56899998876533 589999999775
No 26
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.80 E-value=1.1e-18 Score=161.91 Aligned_cols=118 Identities=28% Similarity=0.458 Sum_probs=102.0
Q ss_pred cCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCC-CceEEEEEEeCCc
Q 003975 363 KGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDP-CTVITIGVFDNCY 440 (782)
Q Consensus 363 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~-~~~l~i~v~d~~~ 440 (782)
....|.|+|+|++|+||++.+.. |. ||||++.++++.+||++++++.||.|||.|.|.+.++ ...|.|+|||++.
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d~~---g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~ 87 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCNSN---GKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDF 87 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCCCC---CCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCC
Confidence 56789999999999999988643 66 9999999999999999999999999999999999875 4689999999998
Q ss_pred CCCCCCCCCCCccEEEEEEcccccC-----CceEEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 441 VNGSKDDAKDQRIGKVRIRLSTLET-----DRIYTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 441 ~~~~~~~~~d~~lG~~~i~l~~l~~-----~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
++ +|++||++.|+|+++.. ......|.++. + ...|+|+|++.|
T Consensus 88 ~~------~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~-----~-~~~g~i~l~~~~ 135 (136)
T cd08375 88 FS------PDDFLGRTEIRVADILKETKESKGPITKRLLLH-----E-VPTGEVVVKLDL 135 (136)
T ss_pred CC------CCCeeEEEEEEHHHhccccccCCCcEEEEeccc-----c-ccceeEEEEEEe
Confidence 76 89999999999999976 44556777764 2 335999999987
No 27
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.80 E-value=6.1e-19 Score=160.39 Aligned_cols=117 Identities=32% Similarity=0.455 Sum_probs=102.4
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccC-CCCCccccEEEEEeccCCCCeEEEEEEeCCCCCCcee
Q 003975 40 HYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEK-NQNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDFV 118 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~-t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~~d~~l 118 (782)
|.|.|+|++|++|+..+..|.+||||+|.+++++++|+++.+ +.||+|||.|.|.+.......|.|+|||++..+|++|
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~~i 80 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPDLI 80 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCcce
Confidence 579999999999999999999999999999999999999865 7899999999999986556889999999987778999
Q ss_pred EEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEe
Q 003975 119 GRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWM 164 (782)
Q Consensus 119 G~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~ 164 (782)
|++.+++.++..+. ...+|++|.... . ..|+|++++.|
T Consensus 81 G~~~~~l~~~~~~~-----~~~~w~~L~~~~-~--~~G~i~l~l~f 118 (118)
T cd08681 81 GDTEVDLSPALKEG-----EFDDWYELTLKG-R--YAGEVYLELTF 118 (118)
T ss_pred EEEEEecHHHhhcC-----CCCCcEEeccCC-c--EeeEEEEEEEC
Confidence 99999999987643 257899998643 3 48999999865
No 28
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.80 E-value=6.3e-19 Score=160.51 Aligned_cols=111 Identities=34% Similarity=0.565 Sum_probs=97.1
Q ss_pred CCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEe---c
Q 003975 25 GGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSK---E 96 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~---~ 96 (782)
|...+++.|+ .+.|.|+|++|++|+..+ .|.+||||++++.+ .+++|++++++.||+|||+|.|.+ .
T Consensus 2 G~l~~~l~y~----~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~ 76 (122)
T cd08381 2 GQVKLSISYK----NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVE 76 (122)
T ss_pred CeEEEEEEEe----CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChH
Confidence 3457888888 478999999999999999 89999999999963 468999999999999999999986 2
Q ss_pred cCCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEe
Q 003975 97 RLQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRL 145 (782)
Q Consensus 97 ~~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L 145 (782)
+.....|+|+|||++.. ++++||++.++|+++.... ....||+|
T Consensus 77 ~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~-----~~~~W~~L 121 (122)
T cd08381 77 DLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQ-----ETEKWYPL 121 (122)
T ss_pred HhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCC-----CccceEEC
Confidence 45678999999999998 8999999999999998653 25789987
No 29
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.79 E-value=2.9e-19 Score=163.43 Aligned_cols=94 Identities=39% Similarity=0.563 Sum_probs=89.3
Q ss_pred cceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CC
Q 003975 37 ELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KD 115 (782)
Q Consensus 37 ~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d 115 (782)
...|.|+|+|++|.+|..+|..+++||||.+.+|+++.||++++++.||+|||+|.|.+.+. ...|.++|||+|.+ +|
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~fs~d 81 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTFSSD 81 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCCCcc
Confidence 45689999999999999999889999999999999999999999999999999999999885 68899999999999 99
Q ss_pred ceeEEEEEEccccCCC
Q 003975 116 DFVGRVSLDLSQVPLR 131 (782)
Q Consensus 116 ~~lG~~~v~l~~l~~~ 131 (782)
|+||.++|+|..+...
T Consensus 82 D~mG~A~I~l~p~~~~ 97 (168)
T KOG1030|consen 82 DFMGEATIPLKPLLEA 97 (168)
T ss_pred cccceeeeccHHHHHH
Confidence 9999999999999875
No 30
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.79 E-value=2.6e-18 Score=157.58 Aligned_cols=119 Identities=26% Similarity=0.465 Sum_probs=100.8
Q ss_pred eEEEEEEEEeecCCCCccCCCCCCCcEEEEEECCE-EEeecccCCCCCCeeccEEEEEeeCCC-ceEEEEEEeCCcCCCC
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNK-WIRTRTILDTLAPRWNEQYTWDVYDPC-TVITIGVFDNCYVNGS 444 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~~-~~rT~~~~~t~~P~wne~~~f~v~~~~-~~l~i~v~d~~~~~~~ 444 (782)
..|+|+|++|+||+..+ .+||||+|.+++. ..||++ +++.||.|||.|.|++..+. ..++|.|||++.++
T Consensus 4 ~~L~V~Vi~A~~L~~~~-----~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~-- 75 (126)
T cd08400 4 RSLQLNVLEAHKLPVKH-----VPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRS-- 75 (126)
T ss_pred eEEEEEEEEeeCCCCCC-----CCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCC--
Confidence 47999999999998632 2399999999884 478987 46899999999999976553 57999999998876
Q ss_pred CCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEEEE
Q 003975 445 KDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRFTC 497 (782)
Q Consensus 445 ~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~~~ 497 (782)
+|++||++.|+|+++..+.....||+|......+.+..|+|+|+++|..
T Consensus 76 ----~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 76 ----KDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred ----CCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 8999999999999999998899999998754434556799999999854
No 31
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.79 E-value=8.6e-19 Score=159.41 Aligned_cols=115 Identities=30% Similarity=0.538 Sum_probs=99.1
Q ss_pred eEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCC-CCCCeeccEEEEEeeCC-CceEEEEEEeCCcCCC
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILD-TLAPRWNEQYTWDVYDP-CTVITIGVFDNCYVNG 443 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~-t~~P~wne~~~f~v~~~-~~~l~i~v~d~~~~~~ 443 (782)
|.|+|.|++|+||+..+.. +. ||||+++++++..+|+++.+ +.||+|||.|.|.+..+ ...|.|+|||++..
T Consensus 1 g~L~V~v~~A~~L~~~~~~---~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-- 75 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKL---DKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKR-- 75 (118)
T ss_pred CEEEEEEEEccCCCCCCcC---CCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC--
Confidence 6899999999999987643 56 99999999999999999865 78999999999999874 57899999999863
Q ss_pred CCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 444 SKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 444 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
.|++||++.++++++..+....+||+|.. ++ +..|+|+|++.|
T Consensus 76 -----~~~~iG~~~~~l~~~~~~~~~~~w~~L~~---~~-~~~G~i~l~l~f 118 (118)
T cd08681 76 -----KPDLIGDTEVDLSPALKEGEFDDWYELTL---KG-RYAGEVYLELTF 118 (118)
T ss_pred -----CCcceEEEEEecHHHhhcCCCCCcEEecc---CC-cEeeEEEEEEEC
Confidence 48999999999999987777899999974 22 457999999865
No 32
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.78 E-value=3e-18 Score=155.33 Aligned_cols=113 Identities=39% Similarity=0.599 Sum_probs=101.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCceeE
Q 003975 41 YLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDDFVG 119 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~~lG 119 (782)
+|+|+|++|++|+..+..|.+||||++++++++.+|+++++|.||.|||+|.|.+.+.....|.|+|||++.. +|++||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG 80 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG 80 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence 4789999999999999889999999999999999999999999999999999999876678999999999988 999999
Q ss_pred EEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEe
Q 003975 120 RVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWM 164 (782)
Q Consensus 120 ~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~ 164 (782)
++.+++.++..+. ....|++|++. .|+|++.+.|
T Consensus 81 ~~~~~l~~l~~~~-----~~~~w~~L~~~------~G~~~~~~~~ 114 (116)
T cd08376 81 RCEIDLSALPREQ-----THSLELELEDG------EGSLLLLLTL 114 (116)
T ss_pred EEEEeHHHCCCCC-----ceEEEEEccCC------CcEEEEEEEe
Confidence 9999999998653 36789999863 4888887755
No 33
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.78 E-value=3.5e-18 Score=154.92 Aligned_cols=112 Identities=28% Similarity=0.443 Sum_probs=100.7
Q ss_pred EEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCC-CceEEEEEEeCCcCCCCC
Q 003975 368 TLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDP-CTVITIGVFDNCYVNGSK 445 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~-~~~l~i~v~d~~~~~~~~ 445 (782)
.++|.|++|+||+..+.. +. ||||+++++++..+|+++++|.||.|||.|.|.+.++ ...|.|+|||++.++
T Consensus 1 ~~~V~v~~a~~L~~~~~~---~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~--- 74 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDN---GLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGK--- 74 (116)
T ss_pred CEEEEEEEEECCCCCCCC---CCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCC---
Confidence 378999999999988643 56 9999999999999999999999999999999999876 679999999999876
Q ss_pred CCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 446 DDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 446 ~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
+|++||++.++|+++..+.....|++|.. ..|+|++.+.+
T Consensus 75 ---~~~~iG~~~~~l~~l~~~~~~~~w~~L~~-------~~G~~~~~~~~ 114 (116)
T cd08376 75 ---KDEFIGRCEIDLSALPREQTHSLELELED-------GEGSLLLLLTL 114 (116)
T ss_pred ---CCCeEEEEEEeHHHCCCCCceEEEEEccC-------CCcEEEEEEEe
Confidence 89999999999999999889999999974 14999998765
No 34
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.78 E-value=2.1e-18 Score=152.53 Aligned_cols=108 Identities=20% Similarity=0.307 Sum_probs=89.6
Q ss_pred ceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC----eEeeeccccCCCCCccccEEEEEec--cCCCC
Q 003975 28 KTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN----YKGITKHLEKNQNPVWNQIFAFSKE--RLQSS 101 (782)
Q Consensus 28 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~----~~~kT~~i~~t~nP~Wne~f~f~~~--~~~~~ 101 (782)
.+++.|+ +..+.|.|+|++|++|+ . .|.+||||++.+.. .+.+|+++++|+||+|||+|.|.+. ++...
T Consensus 4 ~fsL~Y~--~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~ 78 (118)
T cd08677 4 HYSLSYD--KQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDG 78 (118)
T ss_pred EEEEEEc--CcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCc
Confidence 3445554 46789999999999999 3 46799999999963 4789999999999999999999985 46678
Q ss_pred eEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEe
Q 003975 102 LLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRL 145 (782)
Q Consensus 102 ~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L 145 (782)
.|.|.|||+|.+ ++++||++.++++++.... ...+|.+|
T Consensus 79 tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~-----~~~~W~~~ 118 (118)
T cd08677 79 TLTLTLRCCDRFSRHSTLGELRLKLADVSMML-----GAAQWVDL 118 (118)
T ss_pred EEEEEEEeCCCCCCCceEEEEEEccccccCCc-----cccchhcC
Confidence 899999999999 9999999999999875432 24567654
No 35
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.77 E-value=4.9e-18 Score=156.94 Aligned_cols=122 Identities=28% Similarity=0.422 Sum_probs=105.6
Q ss_pred eEEEEEEEEeeCCCCCCC--CCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCc
Q 003975 40 HYLCVNVVKARNLPVMDV--SGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDD 116 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~--~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~ 116 (782)
|.|.|+|++|++|+..+. .+.+||||+|.+++++.+|++++++.||+|||+|.|.+.......|.|+|||++.. +++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 679999999999999988 89999999999999999999999999999999999999876678999999999988 899
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCC--cccceEEEEEEE
Q 003975 117 FVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGD--QTTKGEIMLAVW 163 (782)
Q Consensus 117 ~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~--~~~~G~l~l~~~ 163 (782)
+||++.+++.++.... ......+||+|.+.... ....|+|++.+.
T Consensus 81 ~lG~~~i~l~~~~~~~--~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 81 YLGEFDIALEEVFADG--KTGQSDKWITLKSTRPGKTSVVSGEIHLQFS 127 (128)
T ss_pred cceEEEEEHHHhhccc--ccCccceeEEccCcccCccccccceEEEEEE
Confidence 9999999999997521 12236799999876422 236899999875
No 36
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.77 E-value=2.7e-18 Score=151.84 Aligned_cols=102 Identities=17% Similarity=0.220 Sum_probs=86.8
Q ss_pred cCceeEEEEEEEEeecCCCCccCCCCCCCcEEEEEECC----EEEeecccCCCCCCeeccEEEEEeeC---CCceEEEEE
Q 003975 363 KGSIGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGN----KWIRTRTILDTLAPRWNEQYTWDVYD---PCTVITIGV 435 (782)
Q Consensus 363 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~----~~~rT~~~~~t~~P~wne~~~f~v~~---~~~~l~i~v 435 (782)
.+..|.|.|+|++|+||+ . + +++||||++++.. .+.+|++.++|+||+|||.|.|.|.. +...|.|+|
T Consensus 10 ~~~~~~L~V~vikA~~L~-~---~-g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V 84 (118)
T cd08677 10 DKQKAELHVNILEAENIS-V---D-AGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTL 84 (118)
T ss_pred cCcCCEEEEEEEEecCCC-C---C-CCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEE
Confidence 345689999999999998 2 2 2359999999953 47899999999999999999999874 366899999
Q ss_pred EeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEee
Q 003975 436 FDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPL 475 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L 475 (782)
||+|.++ ++++||++.++++++..+....+|.+|
T Consensus 85 ~d~Drfs------~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 85 RCCDRFS------RHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred EeCCCCC------CCceEEEEEEccccccCCccccchhcC
Confidence 9999987 899999999999998666666788764
No 37
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.77 E-value=5.4e-18 Score=154.47 Aligned_cols=117 Identities=26% Similarity=0.462 Sum_probs=101.6
Q ss_pred eEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCCCC
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGSK 445 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~~ 445 (782)
|.|+|+|++|+||+.++.. +. ||||+|++++..++|++++++.||.|||+|.|++.+....|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~~---~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~--- 74 (119)
T cd08377 1 GFLQVKVIRASGLAAADIG---GKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDK--- 74 (119)
T ss_pred CEEEEEEEeeeCCCCCCCC---CCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCC---
Confidence 6899999999999987643 55 9999999999999999999999999999999999876789999999998765
Q ss_pred CCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 446 DDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 446 ~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
++++||++.+++.++..+. ..||+|...... .+..|+|+++++|
T Consensus 75 ---~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~-~~~~G~i~l~~~~ 118 (119)
T cd08377 75 ---KPEFLGKVAIPLLSIKNGE--RKWYALKDKKLR-TRAKGSILLEMDV 118 (119)
T ss_pred ---CCceeeEEEEEHHHCCCCC--ceEEECcccCCC-CceeeEEEEEEEe
Confidence 8999999999999998765 689999864322 2346999999876
No 38
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.77 E-value=2.9e-18 Score=156.89 Aligned_cols=116 Identities=19% Similarity=0.269 Sum_probs=99.0
Q ss_pred cceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEEC-----CE
Q 003975 328 SSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYG-----NK 401 (782)
Q Consensus 328 ~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~-----~~ 401 (782)
+|+|++++.+. +..|.|.|.|++|+||++.+. ..+. ||||+|++. ..
T Consensus 1 ~G~i~~sl~y~-------------------------~~~~~L~V~Vi~a~~L~~~~~--~~~~~DpyVkv~l~p~~~~~~ 53 (125)
T cd04029 1 SGEILFSLSYD-------------------------YKTQSLNVHVKECRNLAYGDE--AKKRSNPYVKTYLLPDKSRQS 53 (125)
T ss_pred CcEEEEEEEEE-------------------------CCCCeEEEEEEEecCCCccCC--CCCCCCcEEEEEEEcCCcccc
Confidence 38888988862 345799999999999998763 2356 999999984 23
Q ss_pred EEeecccCCCCCCeeccEEEEEeeC---CCceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeee
Q 003975 402 WIRTRTILDTLAPRWNEQYTWDVYD---PCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLL 476 (782)
Q Consensus 402 ~~rT~~~~~t~~P~wne~~~f~v~~---~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 476 (782)
+.||++++++.||+|||+|.|++.. ....|.|+|||++.++ ++++||.+.|+|.++......+.||||.
T Consensus 54 ~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~~------~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 54 KRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDRFG------RNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred ceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCC------CCcEEEEEEEeCCcccccCCcccEEECc
Confidence 5899999999999999999999875 2568999999999876 8999999999999999988899999983
No 39
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.77 E-value=7.2e-18 Score=153.65 Aligned_cols=117 Identities=36% Similarity=0.623 Sum_probs=104.0
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCcee
Q 003975 40 HYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDDFV 118 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~~l 118 (782)
|.|.|+|++|++|+..+..+.+||||++.+++...+|++++++.||.|||+|.|.+.+. ...|.|+|||++.. ++++|
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~~~i 79 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKPEFL 79 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCCcee
Confidence 67999999999999999889999999999999889999999999999999999998764 57899999999987 99999
Q ss_pred EEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEe
Q 003975 119 GRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWM 164 (782)
Q Consensus 119 G~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~ 164 (782)
|++.+++.++..+ ..+||+|.+..+.....|+|++++.+
T Consensus 80 G~~~~~l~~~~~~-------~~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 80 GKVAIPLLSIKNG-------ERKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred eEEEEEHHHCCCC-------CceEEECcccCCCCceeeEEEEEEEe
Confidence 9999999998754 35899998776544468999999865
No 40
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.77 E-value=3.8e-18 Score=157.13 Aligned_cols=119 Identities=25% Similarity=0.406 Sum_probs=100.2
Q ss_pred EEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCC----CceEEEEEEeCCcCC
Q 003975 368 TLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDP----CTVITIGVFDNCYVN 442 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~----~~~l~i~v~d~~~~~ 442 (782)
.|+|+|++|+||++.+. .|. ||||++.++++..||+++.++.||+|||.|.|.+.++ ...|.|+|||++.++
T Consensus 1 ~L~V~vi~A~~L~~~d~---~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~ 77 (127)
T cd04022 1 KLVVEVVDAQDLMPKDG---QGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG 77 (127)
T ss_pred CeEEEEEEeeCCCCCCC---CCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc
Confidence 48999999999998764 356 9999999999999999999999999999999999864 257999999988652
Q ss_pred CCCCCCCCCccEEEEEEccccc-CCceEEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 443 GSKDDAKDQRIGKVRIRLSTLE-TDRIYTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 443 ~~~~~~~d~~lG~~~i~l~~l~-~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
.+|++||++.|+++++. .+.....||+|...... .+..|+|+|++.|
T Consensus 78 -----~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~-~~~~G~l~l~~~~ 125 (127)
T cd04022 78 -----RRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLF-SRVRGEIGLKVYI 125 (127)
T ss_pred -----CCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCC-CCccEEEEEEEEE
Confidence 16899999999999997 56777899999864322 2347999999876
No 41
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.77 E-value=5.4e-18 Score=155.83 Aligned_cols=118 Identities=18% Similarity=0.316 Sum_probs=100.9
Q ss_pred EEEEEEEeecCCCCccCCCCCC-CcEEEEEECC--EEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCCCC
Q 003975 369 LELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN--KWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGSK 445 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~--~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~~ 445 (782)
|.|+|++|+||+. . .|. ||||++++++ +.+||++++++.||.|||.|.|.+......|.|+|||++..+
T Consensus 1 l~v~v~~A~~L~~--~---~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~--- 72 (126)
T cd08678 1 LLVKNIKANGLSE--A---AGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKS--- 72 (126)
T ss_pred CEEEEEEecCCCC--C---CCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCC---
Confidence 5789999999986 2 256 9999999974 679999999999999999999999765678999999999865
Q ss_pred CCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEEEE
Q 003975 446 DDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRFTC 497 (782)
Q Consensus 446 ~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~~~ 497 (782)
+|++||++.++++++..+.....||+|......+....|+|++++.|..
T Consensus 73 ---~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~ 121 (126)
T cd08678 73 ---DSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFME 121 (126)
T ss_pred ---CCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEec
Confidence 7999999999999999888788999998643333445799999999854
No 42
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.77 E-value=5.1e-18 Score=157.57 Aligned_cols=104 Identities=23% Similarity=0.355 Sum_probs=89.8
Q ss_pred eEEEEEEEEeecCCCCccCCCCCC-CcEEEEEEC--C---EEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEE-eCC
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYG--N---KWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVF-DNC 439 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~--~---~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~-d~~ 439 (782)
|.|.|+|++|+||++.+. ..|. ||||++++. + .+.||+++++|+||+|||+|.|.+......|.|+|| |++
T Consensus 29 ~~L~V~Vi~ArnL~~~~~--~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~ 106 (146)
T cd04028 29 GQLEVEVIRARGLVQKPG--SKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYG 106 (146)
T ss_pred CEEEEEEEEeeCCCcccC--CCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCC
Confidence 699999999999998642 2355 999999993 2 378999999999999999999999866779999999 566
Q ss_pred cCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeec
Q 003975 440 YVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLL 478 (782)
Q Consensus 440 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~ 478 (782)
.++ ++++||.+.|+|+++..+.....||+|.+.
T Consensus 107 ~~~------~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 107 RMD------KKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCC------CCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 554 889999999999999888888999999863
No 43
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.77 E-value=3.6e-18 Score=152.40 Aligned_cols=102 Identities=30% Similarity=0.454 Sum_probs=89.3
Q ss_pred eeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCCCCcee
Q 003975 39 MHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDFV 118 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~~d~~l 118 (782)
|+.|.|+|++|++|+..+ ..||||++++|+++.+|++.++ .||+|||+|.|.+.+.. ..|.|+|||++...|++|
T Consensus 1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~-~~L~v~V~dkd~~~DD~l 75 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLD-LGLVIELWNKGLIWDTLV 75 (127)
T ss_pred CceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCC-CEEEEEEEeCCCcCCCce
Confidence 578999999999997544 5699999999999999999988 59999999999998754 449999999997799999
Q ss_pred EEEEEEccccCCCCCCCCCCCCEEEEeccC
Q 003975 119 GRVSLDLSQVPLRVPPDSPLAPQWYRLEDK 148 (782)
Q Consensus 119 G~~~v~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (782)
|++.++|.++..+ +.++.++||+|+..
T Consensus 76 G~v~i~L~~v~~~---~~~~~~~Wy~L~~~ 102 (127)
T cd08394 76 GTVWIPLSTIRQS---NEEGPGEWLTLDSE 102 (127)
T ss_pred EEEEEEhHHcccC---CCCCCCccEecChH
Confidence 9999999999876 34567899999854
No 44
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.77 E-value=5.6e-18 Score=157.57 Aligned_cols=123 Identities=29% Similarity=0.441 Sum_probs=105.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-------EeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC
Q 003975 41 YLCVNVVKARNLPVMDVSGSLDPYVEVKLGNY-------KGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG 113 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-------~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~ 113 (782)
.|+|+|++|++|+..|..|.+||||+|.+++. +.+|+++++|.||+|||+|.|.+... ...|.|+|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence 37999999999999998899999999999764 57999999999999999999998653 56799999999988
Q ss_pred -CCceeEEEEEEccccCCCCCCC-CCCCCEEEEeccCCCCcccceEEEEEEEe
Q 003975 114 -KDDFVGRVSLDLSQVPLRVPPD-SPLAPQWYRLEDKKGDQTTKGEIMLAVWM 164 (782)
Q Consensus 114 -~d~~lG~~~v~l~~l~~~~~~~-~~~~~~w~~L~~~~g~~~~~G~l~l~~~~ 164 (782)
++++||++.+++.++....+.+ .....+||+|++..+.....|+|++++.|
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 8999999999999998764432 34577999999765443468999999876
No 45
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.77 E-value=5.1e-18 Score=157.59 Aligned_cols=118 Identities=27% Similarity=0.278 Sum_probs=100.4
Q ss_pred cccCCCceeeeeccccceeEEEEEEEEeeCCCCCC-CCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEe
Q 003975 22 RYRGGDKTASTYDLVELMHYLCVNVVKARNLPVMD-VSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSK 95 (782)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~ 95 (782)
+..|..++++.|+ .+.|.|+|++|+||+..+ ..|.+||||++++.. .++||+++++|+||+|||+|.|.+
T Consensus 15 ~~~G~l~lsl~y~----~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v 90 (146)
T cd04028 15 PSMGDIQLGLYDK----KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDV 90 (146)
T ss_pred CCcceEEEEEEeC----CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEE
Confidence 3467788888884 478999999999999874 578999999999953 368999999999999999999999
Q ss_pred ccCCCCeEEEEEE-eCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCC
Q 003975 96 ERLQSSLLEVTVK-DKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKK 149 (782)
Q Consensus 96 ~~~~~~~L~i~V~-d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
. .....|.|+|| |++.+ ++++||++.|+|+++..+. ....||+|.+..
T Consensus 91 ~-l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~-----~~~~Wy~L~~~~ 140 (146)
T cd04028 91 S-PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSN-----LVIGWYKLFPTS 140 (146)
T ss_pred c-CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCC-----CceeEEecCCcc
Confidence 8 56889999999 57777 8999999999999986543 257899998764
No 46
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.77 E-value=3.8e-18 Score=156.27 Aligned_cols=115 Identities=30% Similarity=0.482 Sum_probs=98.6
Q ss_pred CCCceeeeeccccceeEEEEEEEEeeCCCCCCCC-CCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEec--
Q 003975 25 GGDKTASTYDLVELMHYLCVNVVKARNLPVMDVS-GSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKE-- 96 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~-- 96 (782)
|..++++.|+. ..+.|.|+|++|+||+.+|.. |.+||||++++.+ .+++|+++++|.||+|||+|.|.+.
T Consensus 2 G~i~~sl~y~~--~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~ 79 (125)
T cd08393 2 GSVQFALDYDP--KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVERE 79 (125)
T ss_pred cEEEEEEEEEC--CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHH
Confidence 55678888866 457899999999999999975 8999999999952 3579999999999999999999986
Q ss_pred cCCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEec
Q 003975 97 RLQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 97 ~~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
++....|.|+|||++.. ++++||++.++|+++.... ....||+|+
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~-----~~~~W~~L~ 125 (125)
T cd08393 80 ELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSN-----TQPTWYPLQ 125 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCC-----CCcceEECc
Confidence 34567899999999988 9999999999999996552 357899984
No 47
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.77 E-value=4.7e-18 Score=154.76 Aligned_cols=99 Identities=25% Similarity=0.371 Sum_probs=87.9
Q ss_pred eEEEEEEEEeecCCCCccCCCCCC-CcEEEEEEC-----CEEEeecccCCCCCCeeccEEEEEeeC----CCceEEEEEE
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYG-----NKWIRTRTILDTLAPRWNEQYTWDVYD----PCTVITIGVF 436 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~-----~~~~rT~~~~~t~~P~wne~~~f~v~~----~~~~l~i~v~ 436 (782)
|.|.|.|++|+||++++ . +. ||||++++. ..+.||++++++.||+|||+|.|++.. ....|.|+||
T Consensus 13 ~~L~V~Vi~A~~L~~~~-~---~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~ 88 (122)
T cd08381 13 GTLFVMVMHAKNLPLLD-G---SDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVW 88 (122)
T ss_pred CEEEEEEEEeeCCCCCC-C---CCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEE
Confidence 69999999999999886 3 56 999999996 347899999999999999999999832 3569999999
Q ss_pred eCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEee
Q 003975 437 DNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPL 475 (782)
Q Consensus 437 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L 475 (782)
|++.++ ++++||++.|+|+++..++....||+|
T Consensus 89 d~d~~~------~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 89 SHDSLV------ENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred eCCCCc------CCcEEEEEEEeccccccCCCccceEEC
Confidence 999876 899999999999999988888999998
No 48
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.77 E-value=5.9e-18 Score=156.41 Aligned_cols=121 Identities=23% Similarity=0.418 Sum_probs=102.2
Q ss_pred eEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeC-CCceEEEEEEeCCcCCCC
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYD-PCTVITIGVFDNCYVNGS 444 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~-~~~~l~i~v~d~~~~~~~ 444 (782)
|.|+|.|++|+||+..+.. +.+. ||||++.++++.++|++++++.||.|||.|.|++.+ ....|.|+|||++.++
T Consensus 1 g~l~v~v~~a~~L~~~~~~-~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~-- 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRS-GKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA-- 77 (128)
T ss_pred CEEEEEEEEeeCCCcccCC-CCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC--
Confidence 7899999999999987641 1356 999999999999999999999999999999999987 4679999999999765
Q ss_pred CCCCCCCccEEEEEEccccc---CCceEEEEEeeeecCC-CCCCcCcEEEEEEE
Q 003975 445 KDDAKDQRIGKVRIRLSTLE---TDRIYTHYYPLLLLTP-SGLKNNGELHLALR 494 (782)
Q Consensus 445 ~~~~~d~~lG~~~i~l~~l~---~~~~~~~w~~L~~~~~-~g~~~~G~i~l~~~ 494 (782)
+|++||++.|+|.++. .......||+|..... ......|+|+|++.
T Consensus 78 ----~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 78 ----GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFS 127 (128)
T ss_pred ----CCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEE
Confidence 7899999999999997 3345689999987533 22345799999864
No 49
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.77 E-value=5e-18 Score=155.50 Aligned_cols=117 Identities=27% Similarity=0.342 Sum_probs=99.8
Q ss_pred CCCceeeeeccccceeEEEEEEEEeeCCCCCCCC-CCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEecc-
Q 003975 25 GGDKTASTYDLVELMHYLCVNVVKARNLPVMDVS-GSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKER- 97 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~- 97 (782)
|..++++.|+.. .+.|.|+|++|+||+.++.. |.+||||++++.. .++||++++++.||+|||+|.|.+..
T Consensus 2 G~i~~sl~Y~~~--~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~ 79 (128)
T cd08392 2 GEIEFALHYNFR--TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEAD 79 (128)
T ss_pred cEEEEEEEEeCC--CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHH
Confidence 667888888874 46999999999999999875 9999999999953 36799999999999999999999853
Q ss_pred -CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEe
Q 003975 98 -LQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRL 145 (782)
Q Consensus 98 -~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L 145 (782)
+....|.+.|||++.+ ++++||++.|+|+++..... .+...+||+|
T Consensus 80 ~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~--~~~~~~W~~l 127 (128)
T cd08392 80 LLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDT--DSQRFLWYPL 127 (128)
T ss_pred HhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCC--CccccceEEC
Confidence 4467999999999988 99999999999999965432 2357799998
No 50
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.76 E-value=1.1e-17 Score=152.16 Aligned_cols=117 Identities=24% Similarity=0.373 Sum_probs=99.5
Q ss_pred EEEEEEEeeCCCCCC-CCCCCCcEEEEEECCe-EeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCcee
Q 003975 42 LCVNVVKARNLPVMD-VSGSLDPYVEVKLGNY-KGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDDFV 118 (782)
Q Consensus 42 L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~~~-~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~~l 118 (782)
|.|+|.+|+||+..+ ..|.+||||+|.++++ .++|+++++|.||+|||+|.|.+.+. ...|.|.|||++.. +|++|
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~~i 80 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDSVI 80 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCceE
Confidence 689999999999874 4688999999999875 68999999999999999999999753 47899999999998 99999
Q ss_pred EEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEe
Q 003975 119 GRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWM 164 (782)
Q Consensus 119 G~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~ 164 (782)
|.+.++++++..+. ....||+|+.........|+|++++.+
T Consensus 81 G~~~i~l~~l~~~~-----~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 81 GKVAIKKEDLHKYY-----GKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred EEEEEEHHHccCCC-----CcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 99999999998643 257899998754332358999998753
No 51
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.76 E-value=1.1e-17 Score=153.37 Aligned_cols=116 Identities=30% Similarity=0.459 Sum_probs=100.8
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCceeEE
Q 003975 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDDFVGR 120 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~~lG~ 120 (782)
|.|+|++|++|+..+..|.+||||+|++++++.+|+++++|.||+|||+|.|.+.......|.|+|||++.. ++++||+
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~ 81 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLGK 81 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeEE
Confidence 799999999999999889999999999999999999999999999999999999776567899999999988 8999999
Q ss_pred EEEEccccCCCCCCCCCCCCEEEEeccCCCC----cccceEEEEEE
Q 003975 121 VSLDLSQVPLRVPPDSPLAPQWYRLEDKKGD----QTTKGEIMLAV 162 (782)
Q Consensus 121 ~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~----~~~~G~l~l~~ 162 (782)
+.+++.++.... ....||.|...... ....|.|.+.+
T Consensus 82 ~~~~l~~l~~~~-----~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 82 VVFSIQTLQQAK-----QEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEHHHcccCC-----CCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 999999997643 25689999864322 12579988875
No 52
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.76 E-value=5.4e-18 Score=155.25 Aligned_cols=116 Identities=18% Similarity=0.344 Sum_probs=97.9
Q ss_pred cceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEEC-----CE
Q 003975 328 SSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYG-----NK 401 (782)
Q Consensus 328 ~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~-----~~ 401 (782)
+|+|++++.+.. ..+.|.|+|++|+||++++. ..|. ||||++++. ..
T Consensus 1 ~G~i~~sl~y~~-------------------------~~~~L~V~vi~a~~L~~~d~--~~g~~dpyVkv~l~p~~~~~~ 53 (125)
T cd08393 1 QGSVQFALDYDP-------------------------KLRELHVHVIQCQDLAAADP--KKQRSDPYVKTYLLPDKSNRG 53 (125)
T ss_pred CcEEEEEEEEEC-------------------------CCCEEEEEEEEeCCCCCcCC--CCCCCCcEEEEEEEcCCCccc
Confidence 388888888632 34699999999999998863 2255 999999994 23
Q ss_pred EEeecccCCCCCCeeccEEEEEeeC---CCceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeee
Q 003975 402 WIRTRTILDTLAPRWNEQYTWDVYD---PCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLL 476 (782)
Q Consensus 402 ~~rT~~~~~t~~P~wne~~~f~v~~---~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 476 (782)
+.||++++++.||+|||.|.|++.. ....|.|+|||++.++ ++++||.+.|+|.++..+.....||+|.
T Consensus 54 ~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~~~------~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 54 KRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDSLG------RNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred cccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCCCC------CCcEeEEEEEecCccccCCCCcceEECc
Confidence 5899999999999999999999864 2468999999999876 8999999999999998887788999983
No 53
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.76 E-value=1.3e-17 Score=152.51 Aligned_cols=114 Identities=33% Similarity=0.584 Sum_probs=100.5
Q ss_pred eEEEEEEEEeeCCCCCCC------CCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC
Q 003975 40 HYLCVNVVKARNLPVMDV------SGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG 113 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~------~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~ 113 (782)
|.|.|+|++|++|+..|. .|.+||||+++++++.++|++++++.||+|||+|.|.+.+.....|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 579999999999998874 37899999999999999999999999999999999999866678999999999887
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEE
Q 003975 114 KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVW 163 (782)
Q Consensus 114 ~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~ 163 (782)
++++||++.+++.++..+. ...+||+|.+. ..|+|++.+.
T Consensus 81 ~~~~iG~~~i~l~~l~~~~-----~~~~w~~L~~~-----~~G~~~~~~~ 120 (121)
T cd08391 81 KDDFLGRLSIDLGSVEKKG-----FIDEWLPLEDV-----KSGRLHLKLE 120 (121)
T ss_pred CCCcEEEEEEEHHHhcccC-----ccceEEECcCC-----CCceEEEEEe
Confidence 8999999999999998643 36799999864 2688988764
No 54
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.76 E-value=9.9e-18 Score=153.25 Aligned_cols=115 Identities=29% Similarity=0.519 Sum_probs=100.0
Q ss_pred eEEEEEEEEeecCCCCccCC---CCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeC-CCceEEEEEEeCCcC
Q 003975 367 GTLELGILSAKNLMQMKSKD---GKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYD-PCTVITIGVFDNCYV 441 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~---~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~-~~~~l~i~v~d~~~~ 441 (782)
|.|+|+|++|+||+..+... ..|. ||||+|+++++.++|++++++.||+|||.|.|.+.+ +...|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 68999999999999876421 1355 999999999999999999999999999999999975 467999999999853
Q ss_pred CCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEE
Q 003975 442 NGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALR 494 (782)
Q Consensus 442 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~ 494 (782)
+|++||++.++|+++..+.....||+|... ..|+|+++++
T Consensus 81 -------~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~~~~ 120 (121)
T cd08391 81 -------KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHLKLE 120 (121)
T ss_pred -------CCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEEEEe
Confidence 689999999999999888888999999742 4599999875
No 55
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.76 E-value=7.2e-18 Score=149.63 Aligned_cols=102 Identities=29% Similarity=0.464 Sum_probs=92.8
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCCCCceeEEE
Q 003975 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDFVGRV 121 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~~d~~lG~~ 121 (782)
|.|+|++|++|+..+..+.+||||++++++++++|+++++|.||+|||+|.|.+.+...+.|.|+|+|++. +++||++
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~iG~~ 79 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSLGSL 79 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCccEEE
Confidence 79999999999999888999999999999999999999999999999999999987667899999999986 8999999
Q ss_pred EEEccccCCCCCCCCCCCCEEEEeccC
Q 003975 122 SLDLSQVPLRVPPDSPLAPQWYRLEDK 148 (782)
Q Consensus 122 ~v~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (782)
.++|.++.... ....++||+|++.
T Consensus 80 ~i~l~~l~~~~---~~~~~~w~~L~~~ 103 (105)
T cd04050 80 TLPLSELLKEP---DLTLDQPFPLDNS 103 (105)
T ss_pred EEEHHHhhccc---cceeeeeEecCCC
Confidence 99999998653 2347899999864
No 56
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.75 E-value=2.1e-17 Score=157.28 Aligned_cols=120 Identities=28% Similarity=0.444 Sum_probs=102.7
Q ss_pred eeEEEEEEEEeeCCCCCC------------------------------CCCCCCcEEEEEECCe-EeeeccccCCCCCcc
Q 003975 39 MHYLCVNVVKARNLPVMD------------------------------VSGSLDPYVEVKLGNY-KGITKHLEKNQNPVW 87 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d------------------------------~~g~~dPyv~v~~~~~-~~kT~~i~~t~nP~W 87 (782)
-|.|.|+|.+|++|+++| ..|.+||||+|.+++. ..+|++++++.||+|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 378999999999999987 3577899999999985 479999999999999
Q ss_pred ccEEEEEeccCCCCeEEEEEEeCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCc-ccceEEEEEEEe
Q 003975 88 NQIFAFSKERLQSSLLEVTVKDKDIGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQ-TTKGEIMLAVWM 164 (782)
Q Consensus 88 ne~f~f~~~~~~~~~L~i~V~d~d~~~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~-~~~G~l~l~~~~ 164 (782)
||+|.|.+... .+.|.|.|||.+..++++||++.++++++..+. ...+|++|.+.++.. ...|+|++++.|
T Consensus 86 nE~F~~~~~~~-~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~-----~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 86 NESFHIYCAHY-ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGE-----PVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred ceEEEEEccCC-CCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCC-----CcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 99999998654 468999999999887789999999999998653 367999999876554 246899999877
No 57
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.75 E-value=1.3e-17 Score=151.80 Aligned_cols=113 Identities=33% Similarity=0.468 Sum_probs=98.6
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCCCCcee
Q 003975 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGN---YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDFV 118 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~~d~~l 118 (782)
|.|+|++|++|+..+..|.+||||++++++ ++++|+++++|.||+|||+|.|.+.......|.|+|||++..+|++|
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~i 81 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHL 81 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCccc
Confidence 789999999999998889999999999963 57899999999999999999999876556789999999998889999
Q ss_pred EEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEe
Q 003975 119 GRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWM 164 (782)
Q Consensus 119 G~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~ 164 (782)
|++.+++.++..+. ....|++|.++. .|+|.+.+.+
T Consensus 82 G~~~~~l~~l~~g~-----~~~~~~~L~~~~-----~g~l~~~~~~ 117 (119)
T cd04036 82 GTVLFDVSKLKLGE-----KVRVTFSLNPQG-----KEELEVEFLL 117 (119)
T ss_pred EEEEEEHHHCCCCC-----cEEEEEECCCCC-----CceEEEEEEe
Confidence 99999999998653 367899998742 6888887754
No 58
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.75 E-value=1.1e-17 Score=153.33 Aligned_cols=118 Identities=25% Similarity=0.410 Sum_probs=100.8
Q ss_pred EEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCC-CceEEEEEEeCCcCCCCC
Q 003975 368 TLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDP-CTVITIGVFDNCYVNGSK 445 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~-~~~l~i~v~d~~~~~~~~ 445 (782)
+|+|+|++|+||+.++.. +. ||||+|++++..++|++++++.||+|||.|.|.+... ...|.|+|||++.++
T Consensus 1 ~L~v~vi~a~~L~~~d~~---~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~--- 74 (123)
T cd04025 1 RLRCHVLEARDLAPKDRN---GTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVS--- 74 (123)
T ss_pred CEEEEEEEeeCCCCCCCC---CCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCC---
Confidence 489999999999987643 55 9999999999999999999999999999999999875 568999999999876
Q ss_pred CCCCCCccEEEEEEcccccCCceEEEEEeeeecCCC---CCCcCcEEEEEEE
Q 003975 446 DDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPS---GLKNNGELHLALR 494 (782)
Q Consensus 446 ~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~---g~~~~G~i~l~~~ 494 (782)
++++||.+.++|+++..+.....||+|...... ..+..|.|++.|+
T Consensus 75 ---~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 75 ---KNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred ---CCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 799999999999999877777899999864432 2234788988763
No 59
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.75 E-value=1.5e-17 Score=154.75 Aligned_cols=118 Identities=25% Similarity=0.395 Sum_probs=99.3
Q ss_pred EEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCE-------EEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCC
Q 003975 368 TLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNK-------WIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNC 439 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~-------~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~ 439 (782)
.|+|+|++|+||+..+.. +. ||||++++++. ..+|+++++|.||.|||.|.|.+......|.|+|||++
T Consensus 1 ~L~v~Vi~a~~L~~~d~~---~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~ 77 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIF---GASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDEN 77 (133)
T ss_pred CEEEEEEEeECCCcccCC---CCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECC
Confidence 378999999999987643 56 99999999654 57999999999999999999999766678999999999
Q ss_pred cCCCCCCCCCCCccEEEEEEcccccCCce------EEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 440 YVNGSKDDAKDQRIGKVRIRLSTLETDRI------YTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 440 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~------~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
.++ +|++||++.++++++..+.. ...||+|......+ +..|+|++++.|
T Consensus 78 ~~~------~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~~~G~l~~~~~~ 132 (133)
T cd04033 78 RLT------RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKS-RVKGHLRLYMAY 132 (133)
T ss_pred CCC------CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCC-cceeEEEEEEee
Confidence 876 89999999999999976543 45999998643333 446999999876
No 60
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.75 E-value=9e-18 Score=150.92 Aligned_cols=102 Identities=31% Similarity=0.440 Sum_probs=87.7
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEE-C----C--eEeeeccccCCCCCccccEEEEEecc---CCCCeEEEEEEeCC
Q 003975 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL-G----N--YKGITKHLEKNQNPVWNQIFAFSKER---LQSSLLEVTVKDKD 111 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~-~----~--~~~kT~~i~~t~nP~Wne~f~f~~~~---~~~~~L~i~V~d~d 111 (782)
|+|+|++|++|+..+ .|.+||||+|++ | . ++++|+++.+|+||+|||+|.|.+.. +....|.|.|||++
T Consensus 2 L~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 2 VTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred EEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 799999999999888 599999999998 3 2 35789999999999999999999863 34567999999999
Q ss_pred CC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCC
Q 003975 112 IG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKK 149 (782)
Q Consensus 112 ~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
.. ++++||++.+++.++..+. ....|++|+..-
T Consensus 81 ~~~~dd~IG~~~l~l~~~~~~~-----~~~~w~~L~~~~ 114 (120)
T cd08395 81 FARDDRLVGVTVLQLRDIAQAG-----SCACWLPLGRRI 114 (120)
T ss_pred ccCCCCEEEEEEEEHHHCcCCC-----cEEEEEECcCcc
Confidence 77 8999999999999998654 267899997653
No 61
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.75 E-value=1.8e-17 Score=150.75 Aligned_cols=112 Identities=25% Similarity=0.401 Sum_probs=97.0
Q ss_pred EEEEEEEeecCCCCccCCCCCC-CcEEEEEEC---CEEEeecccCCCCCCeeccEEEEEeeCC-CceEEEEEEeCCcCCC
Q 003975 369 LELGILSAKNLMQMKSKDGKLT-DAYCVAKYG---NKWIRTRTILDTLAPRWNEQYTWDVYDP-CTVITIGVFDNCYVNG 443 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~---~~~~rT~~~~~t~~P~wne~~~f~v~~~-~~~l~i~v~d~~~~~~ 443 (782)
|+|+|++|+||+..+. .+. ||||+++++ ++..||++++++.||+|||.|.|.+..+ ...|.|+|||++.+
T Consensus 2 L~V~vi~a~~L~~~~~---~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-- 76 (119)
T cd04036 2 LTVRVLRATNITKGDL---LSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-- 76 (119)
T ss_pred eEEEEEEeeCCCccCC---CCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC--
Confidence 7899999999998764 356 999999996 3679999999999999999999999764 45799999999864
Q ss_pred CCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEEE
Q 003975 444 SKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRFT 496 (782)
Q Consensus 444 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~~ 496 (782)
+|++||++.++++++..+.....|++|.. ...|+|++++.++
T Consensus 77 -----~~~~iG~~~~~l~~l~~g~~~~~~~~L~~------~~~g~l~~~~~~~ 118 (119)
T cd04036 77 -----MDDHLGTVLFDVSKLKLGEKVRVTFSLNP------QGKEELEVEFLLE 118 (119)
T ss_pred -----CCcccEEEEEEHHHCCCCCcEEEEEECCC------CCCceEEEEEEee
Confidence 68999999999999999999999999974 2259999988763
No 62
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.74 E-value=2.6e-17 Score=150.01 Aligned_cols=116 Identities=31% Similarity=0.489 Sum_probs=98.9
Q ss_pred EEEEEEEeecCCCCccCCCCCC-CcEEEEEECCE-EEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCCCCC
Q 003975 369 LELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNK-WIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGSKD 446 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~-~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~~~ 446 (782)
|.|.|++|+||++++.. |. ||||++.++++ ..||++++++.||.|||.|.|.+......|.|.|||++.++
T Consensus 2 l~v~vi~a~~L~~~d~~---g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~---- 74 (121)
T cd04054 2 LYIRIVEGKNLPAKDIT---GSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLS---- 74 (121)
T ss_pred EEEEEEEeeCCcCCCCC---CCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCC----
Confidence 78999999999988643 56 99999999876 47999999999999999999999877789999999999876
Q ss_pred CCCCCccEEEEEEcccccCC-ceEEEEEeeeecCCCCCCcCcEEEEEEE
Q 003975 447 DAKDQRIGKVRIRLSTLETD-RIYTHYYPLLLLTPSGLKNNGELHLALR 494 (782)
Q Consensus 447 ~~~d~~lG~~~i~l~~l~~~-~~~~~w~~L~~~~~~g~~~~G~i~l~~~ 494 (782)
+|++||++.+++..+..+ ...+.|++|......+ ...|+|+++++
T Consensus 75 --~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~-~~~G~i~l~~~ 120 (121)
T cd04054 75 --RDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDE-EVQGEIHLELS 120 (121)
T ss_pred --CCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCC-ccccEEEEEEE
Confidence 899999999999998754 3478999998654332 34699999864
No 63
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.74 E-value=3.8e-17 Score=152.00 Aligned_cols=122 Identities=29% Similarity=0.463 Sum_probs=100.2
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccC---------CCCeEEEEEEeC
Q 003975 40 HYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERL---------QSSLLEVTVKDK 110 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~---------~~~~L~i~V~d~ 110 (782)
+.|+|+|++|++|+..|..|.+||||+|.+++++++|+++++|.||+|||+|.|.+... ....|.|+|||+
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 47899999999999999999999999999999999999999999999999999975322 135799999999
Q ss_pred CCC-CCceeEEEEE-EccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEecc
Q 003975 111 DIG-KDDFVGRVSL-DLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGT 166 (782)
Q Consensus 111 d~~-~d~~lG~~~v-~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~ 166 (782)
+.. +|++||++.+ ++..+... .......+|++|.... . ..|+|++++.+..
T Consensus 81 d~~~~d~~iG~~~i~~~~~~~~~--~~~~~~~~W~~L~~~~-~--~~Geil~~~~~~~ 133 (135)
T cd04017 81 DSVGKDEFLGRSVAKPLVKLDLE--EDFPPKLQWFPIYKGG-Q--SAGELLAAFELIE 133 (135)
T ss_pred cCCCCCccceEEEeeeeeecccC--CCCCCCceEEEeecCC-C--chhheeEEeEEEE
Confidence 988 8999999997 44444321 1334578999998543 3 4899999997753
No 64
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.74 E-value=1.8e-17 Score=151.54 Aligned_cols=115 Identities=26% Similarity=0.322 Sum_probs=97.2
Q ss_pred CCCceeeeeccccceeEEEEEEEEeeCCCCCCC-CCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEecc-
Q 003975 25 GGDKTASTYDLVELMHYLCVNVVKARNLPVMDV-SGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKER- 97 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~-~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~- 97 (782)
|..++++.|+ +..+.|.|+|++|+||+..+. .|.+||||++++.. .++||++++++.||+|||+|.|.+..
T Consensus 2 G~i~~sl~y~--~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~ 79 (125)
T cd04029 2 GEILFSLSYD--YKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHS 79 (125)
T ss_pred cEEEEEEEEE--CCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHH
Confidence 4456777775 466799999999999998875 58999999999952 35799999999999999999999863
Q ss_pred -CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEec
Q 003975 98 -LQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 98 -~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
+....|.|+|||++.. ++++||++.++|.++.... ....||+|.
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~-----~~~~w~~l~ 125 (125)
T cd04029 80 QLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDS-----QHEECLPLH 125 (125)
T ss_pred HhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccC-----CcccEEECc
Confidence 4567899999999988 9999999999999997753 267899984
No 65
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.74 E-value=1.3e-17 Score=148.95 Aligned_cols=98 Identities=18% Similarity=0.195 Sum_probs=86.9
Q ss_pred eEEEEEEEEeecCCCCccCCCCCCCcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCCCCC
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGSKD 446 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~~~ 446 (782)
|.|.|.|++|++|+.++ +.||||+|++|+++.+|+++++ .||.|||.|.|.+.++...|.|+|||++.+
T Consensus 2 ~~L~V~Vv~Ar~L~~~~-----~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~----- 70 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD-----KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI----- 70 (127)
T ss_pred ceEEEEEEEeeCCCCCC-----CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-----
Confidence 58999999999997532 2399999999999999999988 499999999999988877899999999854
Q ss_pred CCCCCccEEEEEEcccccCCceE--EEEEeeee
Q 003975 447 DAKDQRIGKVRIRLSTLETDRIY--THYYPLLL 477 (782)
Q Consensus 447 ~~~d~~lG~~~i~l~~l~~~~~~--~~w~~L~~ 477 (782)
.|++||++.|+|+++..+... ..||+|..
T Consensus 71 --~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 71 --WDTLVGTVWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred --CCCceEEEEEEhHHcccCCCCCCCccEecCh
Confidence 799999999999999876555 89999985
No 66
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.74 E-value=5.9e-17 Score=148.62 Aligned_cols=118 Identities=24% Similarity=0.398 Sum_probs=98.2
Q ss_pred eeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-EeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCc
Q 003975 39 MHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNY-KGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDD 116 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~ 116 (782)
...|.|+|++|+||+.. +.+||||+|.+++. ..+|+++ ++.||.|||+|.|.+.......+.|.|||.+.. +|+
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~ 78 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS 78 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC
Confidence 34699999999999875 47899999999884 4789874 689999999999987554446799999999988 999
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCEEEEeccCCC-CcccceEEEEEEEec
Q 003975 117 FVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKG-DQTTKGEIMLAVWMG 165 (782)
Q Consensus 117 ~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g-~~~~~G~l~l~~~~~ 165 (782)
+||++.++|.++..+. ....||+|....+ .....|+|+++++|.
T Consensus 79 ~iG~v~i~l~~l~~~~-----~~~~W~~L~~~~~~~~~~~G~i~l~l~~~ 123 (126)
T cd08400 79 EIAEVTVQLSKLQNGQ-----ETDEWYPLSSASPLKGGEWGSLRIRARYS 123 (126)
T ss_pred eEEEEEEEHhHccCCC-----cccEeEEcccCCCCCCCcCcEEEEEEEEE
Confidence 9999999999987643 3678999988653 123579999999886
No 67
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.74 E-value=6.3e-17 Score=148.61 Aligned_cols=119 Identities=19% Similarity=0.233 Sum_probs=101.6
Q ss_pred eeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCCCCcee
Q 003975 39 MHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDFV 118 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~~d~~l 118 (782)
..+|+|+|++|++|+..|..|.+||||++.++++..+|++++++.||+|||.|.|.+.+. ...|.|+|||++..+|++|
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~~d~~l 80 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLLCDEFL 80 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCCCCCce
Confidence 468999999999999999899999999999999999999999999999999999988664 6789999999988888999
Q ss_pred EEEEEEccccCCCCCCCCCCCCEEEEeccCCC--CcccceEEEEEEEec
Q 003975 119 GRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKG--DQTTKGEIMLAVWMG 165 (782)
Q Consensus 119 G~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g--~~~~~G~l~l~~~~~ 165 (782)
|++.+++.++.. ...+|++|..... .....|+|.+++.+.
T Consensus 81 G~~~~~l~~~~~-------~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~ 122 (126)
T cd04046 81 GQATLSADPNDS-------QTLRTLPLRKRGRDAAGEVPGTISVKVTSS 122 (126)
T ss_pred EEEEEecccCCC-------cCceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence 999999987642 2458899974321 123689999998654
No 68
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.74 E-value=2.3e-17 Score=151.38 Aligned_cols=115 Identities=18% Similarity=0.343 Sum_probs=99.5
Q ss_pred cceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEEC---CEEE
Q 003975 328 SSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYG---NKWI 403 (782)
Q Consensus 328 ~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~---~~~~ 403 (782)
+|+|++++.+. +..|.|.|+|++|+||+..+.. |. ||||++.++ .+..
T Consensus 2 ~G~l~~sl~y~-------------------------~~~~~L~V~v~~a~~L~~~d~~---g~~dpyv~v~l~~~~~~~~ 53 (124)
T cd08387 2 RGELHFSLEYD-------------------------KDMGILNVKLIQARNLQPRDFS---GTADPYCKVRLLPDRSNTK 53 (124)
T ss_pred CCEEEEEEEEC-------------------------CCCCEEEEEEEEeeCCCCCCCC---CCCCCeEEEEEecCCCCcE
Confidence 48899988863 3457999999999999987643 56 999999983 3569
Q ss_pred eecccCCCCCCeeccEEEEEeeCC---CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeee
Q 003975 404 RTRTILDTLAPRWNEQYTWDVYDP---CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLL 476 (782)
Q Consensus 404 rT~~~~~t~~P~wne~~~f~v~~~---~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 476 (782)
||++++++.||+|||.|.|.+... ...|.|+|||++.++ +|++||++.|+|+++..+...+.||+|.
T Consensus 54 kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~------~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 54 QSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFS------RDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred eCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCCC------CCceeEEEEEecccccCCCCcceEEECc
Confidence 999999999999999999998753 468999999999876 8999999999999998888889999985
No 69
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.74 E-value=3.4e-17 Score=150.62 Aligned_cols=114 Identities=34% Similarity=0.592 Sum_probs=99.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCC--------
Q 003975 41 YLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDI-------- 112 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~-------- 112 (782)
.|.|+|++|++|+..|..|.+||||+++++++.++|+++++|.||+|||+|.|.+... ...|.|+|||+|.
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~~~~ 80 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSRLKQ 80 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccccce
Confidence 5899999999999999899999999999999999999999999999999999998654 5689999999985
Q ss_pred ----CCCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEE
Q 003975 113 ----GKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAV 162 (782)
Q Consensus 113 ----~~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~ 162 (782)
.++++||++.+++.++... ..+||.|+...+...+.|+|++++
T Consensus 81 ~~~~~~~~~iG~~~i~l~~~~~~-------~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 81 KFTRESDDFLGQTIIEVRTLSGE-------MDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred eccccCCCcceEEEEEhHHccCC-------CCeEEECccCCCCCcEeEEEEEEC
Confidence 2689999999999987432 569999998765555799999864
No 70
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.74 E-value=4.4e-17 Score=148.49 Aligned_cols=117 Identities=30% Similarity=0.452 Sum_probs=99.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-EeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCceeE
Q 003975 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNY-KGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDDFVG 119 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~~lG 119 (782)
|.|+|++|++|+..|..|.+||||++++++. ..+|+++++|.||+|||.|.|.+... ...|.|+|||++.. +|++||
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~~~~d~~iG 80 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPG-FHTVSFYVLDEDTLSRDDVIG 80 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCC-CCEEEEEEEECCCCCCCCEEE
Confidence 7899999999999999999999999999875 47999999999999999999998653 47899999999988 999999
Q ss_pred EEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEE
Q 003975 120 RVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVW 163 (782)
Q Consensus 120 ~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~ 163 (782)
++.+++.++..... ...+|++|.+..+.....|+|++.+.
T Consensus 81 ~~~~~~~~~~~~~~----~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 81 KVSLTREVISAHPR----GIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEcHHHhccCCC----CCCcEEECeeeCCCCccccEEEEEEE
Confidence 99999988864321 35789999875433336899998864
No 71
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.74 E-value=5.9e-17 Score=148.79 Aligned_cols=118 Identities=19% Similarity=0.236 Sum_probs=99.4
Q ss_pred eeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCCC
Q 003975 366 IGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGS 444 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~ 444 (782)
.+.|+|+|++|+||+..+. .|. ||||++.++++.+||++++++.||+|||.|.|.+.++...|.|+|||++.+
T Consensus 2 ~~~~~V~v~~A~~L~~~d~---~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~--- 75 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDS---GGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL--- 75 (126)
T ss_pred cEEEEEEEEeCcCCCCCCC---CCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC---
Confidence 3689999999999998764 356 999999999999999999999999999999999988888999999999865
Q ss_pred CCCCCCCccEEEEEEcccccCCceEEEEEeeeecCC-CCCCcCcEEEEEEEE
Q 003975 445 KDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTP-SGLKNNGELHLALRF 495 (782)
Q Consensus 445 ~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~-~g~~~~G~i~l~~~~ 495 (782)
+|++||.+.+++..+.. ...+||+|..... ...+..|+|.+++.+
T Consensus 76 ----~d~~lG~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~~~G~i~~~~~~ 121 (126)
T cd04046 76 ----CDEFLGQATLSADPNDS--QTLRTLPLRKRGRDAAGEVPGTISVKVTS 121 (126)
T ss_pred ----CCCceEEEEEecccCCC--cCceEEEcccCCCCCCCCCCCEEEEEEEE
Confidence 58999999999998653 3368899974222 233457999999865
No 72
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.74 E-value=2.8e-17 Score=149.44 Aligned_cols=119 Identities=25% Similarity=0.449 Sum_probs=101.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeeecccCCCCCCcccceeEEEecCCCCCeEEEEEEEccCCCCCcee
Q 003975 203 YLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIRPGKDEIL 282 (782)
Q Consensus 203 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d~~i 282 (782)
+|.|+|++|++|+.. .+||||++.++++..+|+++++ +.||+|||+|.|.+..+....|.|+|||++.. ++++|
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~-t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~l 74 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIER-TSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFL 74 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCC-CCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCcee
Confidence 389999999999887 6899999999999999999987 99999999999998877788999999999876 78999
Q ss_pred EEEEEeCCCcccccCCCCCCCCceEEccCCCcccccccccccccccceEEEEEEe
Q 003975 283 GRELIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCL 337 (782)
Q Consensus 283 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~ 337 (782)
|++.++++++..+...+.....+||+|.+.. ..+.+|+|++++.|
T Consensus 75 G~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~----------~~~~~G~i~l~~~~ 119 (121)
T cd08378 75 GGVCFDLSEVPTRVPPDSPLAPQWYRLEDKK----------GGRVGGELMLAVWF 119 (121)
T ss_pred eeEEEEhHhCcCCCCCCCCCCcceEEccCCC----------CCccceEEEEEEEe
Confidence 9999999998754312344578999998763 23567999999886
No 73
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.74 E-value=4.6e-17 Score=149.64 Aligned_cols=117 Identities=21% Similarity=0.362 Sum_probs=100.8
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC--eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCcee
Q 003975 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGN--YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDDFV 118 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~--~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~~l 118 (782)
|.|+|++|++|+. ..|.+||||++.+++ ++++|+++.+|.||+|||+|.|.+.. ....|.|+|||++.. +|++|
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~l 77 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKFL 77 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCceE
Confidence 5799999999988 678999999999974 57899999999999999999999864 367899999999998 89999
Q ss_pred EEEEEEccccCCCCCCCCCCCCEEEEeccCCCC-cccceEEEEEEEecc
Q 003975 119 GRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGD-QTTKGEIMLAVWMGT 166 (782)
Q Consensus 119 G~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~-~~~~G~l~l~~~~~~ 166 (782)
|++.+++.++..... ..+|++|....+. ....|+|.+.+.|..
T Consensus 78 G~~~i~l~~l~~~~~-----~~~~~~L~~~~~~~~~~~G~l~l~~~~~~ 121 (126)
T cd08678 78 GLAIVPFDELRKNPS-----GRQIFPLQGRPYEGDSVSGSITVEFLFME 121 (126)
T ss_pred EEEEEeHHHhccCCc-----eeEEEEecCCCCCCCCcceEEEEEEEEec
Confidence 999999999987543 4689999876432 236899999998864
No 74
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.73 E-value=4.2e-17 Score=149.65 Aligned_cols=115 Identities=33% Similarity=0.464 Sum_probs=98.6
Q ss_pred CCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CeEeeeccccCCCCCccccEEEEEecc--CC
Q 003975 25 GGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLG---NYKGITKHLEKNQNPVWNQIFAFSKER--LQ 99 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~---~~~~kT~~i~~t~nP~Wne~f~f~~~~--~~ 99 (782)
|...+++.|+- ..+.|.|+|++|++|+..+..|.+||||++++. ..+++|++++++.||+|||+|.|.+.. ..
T Consensus 3 G~l~~sl~y~~--~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~ 80 (124)
T cd08387 3 GELHFSLEYDK--DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELP 80 (124)
T ss_pred CEEEEEEEECC--CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhC
Confidence 44566666655 678999999999999999999999999999994 256899999999999999999999863 34
Q ss_pred CCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEec
Q 003975 100 SSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 100 ~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
...|.|+|||++.. ++++||++.++++++..+. ....||+|.
T Consensus 81 ~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~-----~~~~W~~l~ 123 (124)
T cd08387 81 KRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSE-----KLDLWRKIQ 123 (124)
T ss_pred CCEEEEEEEECCCCCCCceeEEEEEecccccCCC-----CcceEEECc
Confidence 57899999999988 8999999999999998653 367899986
No 75
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.73 E-value=3.9e-17 Score=149.86 Aligned_cols=115 Identities=37% Similarity=0.507 Sum_probs=98.5
Q ss_pred CCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eEeeeccccCCCCCccccEEEEEecc--CC
Q 003975 25 GGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN---YKGITKHLEKNQNPVWNQIFAFSKER--LQ 99 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~kT~~i~~t~nP~Wne~f~f~~~~--~~ 99 (782)
|...+++.|+. ..+.|.|+|++|++|+..+..|.+||||++.+.+ .+++|++++++.||+|||+|.|.+.. ..
T Consensus 3 G~l~~~l~y~~--~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~ 80 (124)
T cd08385 3 GKLQFSLDYDF--QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELG 80 (124)
T ss_pred cEEEEEEEEeC--CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhC
Confidence 45567777766 4578999999999999999889999999999953 46799999999999999999999853 34
Q ss_pred CCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEec
Q 003975 100 SSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 100 ~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
...|.|+|||++.. ++++||++.+++.++..+. ...+|++|+
T Consensus 81 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~-----~~~~W~~l~ 123 (124)
T cd08385 81 NKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGH-----VTEEWRDLE 123 (124)
T ss_pred CCEEEEEEEeCCCCCCCceeEEEEEecCcccCCC-----CcceEEEcc
Confidence 57899999999988 8999999999999987643 367999986
No 76
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.73 E-value=5.3e-17 Score=148.99 Aligned_cols=103 Identities=27% Similarity=0.352 Sum_probs=90.2
Q ss_pred ceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC---EEEeecccCCCCCCeeccEEEEEeeCC---CceEEEEEEe
Q 003975 365 SIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN---KWIRTRTILDTLAPRWNEQYTWDVYDP---CTVITIGVFD 437 (782)
Q Consensus 365 ~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~---~~~rT~~~~~t~~P~wne~~~f~v~~~---~~~l~i~v~d 437 (782)
..|.|+|+|++|+||+..+.. +. ||||++.+.+ +.+||++++++.||+|||.|.|.+... ...|.|+|||
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~---~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d 90 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMG---GTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYD 90 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCC---CCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEe
Confidence 347999999999999987643 56 9999999843 568999999999999999999998752 4689999999
Q ss_pred CCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeee
Q 003975 438 NCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLL 476 (782)
Q Consensus 438 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 476 (782)
++.++ +|++||++.++|+++..+...++|++|.
T Consensus 91 ~d~~~------~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 91 FDRFS------KHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCCCC------CCceeEEEEEecCcccCCCCcceEEEcc
Confidence 99876 8899999999999998888889999985
No 77
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.73 E-value=3.8e-17 Score=146.68 Aligned_cols=105 Identities=27% Similarity=0.431 Sum_probs=92.5
Q ss_pred ceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccC----CCCeEEEEEEeCCCC
Q 003975 38 LMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERL----QSSLLEVTVKDKDIG 113 (782)
Q Consensus 38 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~----~~~~L~i~V~d~d~~ 113 (782)
+.+.|+|+|++|++|+ .|.+||||++++++++++|++++++.||.|||+|.|.+... ....|.|+|||++..
T Consensus 2 ~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~ 77 (111)
T cd04011 2 QDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL 77 (111)
T ss_pred CcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence 4678999999999998 57899999999999999999999999999999999997532 356899999999988
Q ss_pred -CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccC
Q 003975 114 -KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDK 148 (782)
Q Consensus 114 -~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (782)
+|++||++.++|+++.... +.....+|++|.++
T Consensus 78 ~~~~~iG~~~i~l~~v~~~~--~~~~~~~w~~L~~~ 111 (111)
T cd04011 78 RSDTLIGSFKLDVGTVYDQP--DHAFLRKWLLLTDP 111 (111)
T ss_pred ccCCccEEEEECCccccCCC--CCcceEEEEEeeCc
Confidence 8999999999999998753 34578899999863
No 78
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.73 E-value=6.8e-17 Score=148.03 Aligned_cols=106 Identities=23% Similarity=0.281 Sum_probs=90.2
Q ss_pred EEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC-----eEeeeecccCCCCCCcccceeEEEecCC--CCCeEEEEEEEc
Q 003975 202 YYLRVFVFEAQDLVPSDKG-RAPDACVRIQLGN-----QLRVTRPSHVRSVNPVWNEEHMFVASEP--FEDLIIVTVEDR 273 (782)
Q Consensus 202 ~~L~V~V~~a~~L~~~~~~-~~~dpyv~v~l~~-----~~~~T~~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~ 273 (782)
+.|.|+|++|+||++.+.. |.+||||++++.. .+.||+++++ +.||+|||+|.|.+... ....|.|.|||.
T Consensus 15 ~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~-t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~ 93 (128)
T cd08392 15 SCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKG-TVNPVFNETLKYVVEADLLSSRQLQVSVWHS 93 (128)
T ss_pred CEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccC-CCCCccceEEEEEcCHHHhCCcEEEEEEEeC
Confidence 4599999999999999875 8999999999953 3678999886 99999999999998543 346899999999
Q ss_pred cCCCCCceeEEEEEeCCCcccccCCCCCCCCceEEcc
Q 003975 274 IRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLH 310 (782)
Q Consensus 274 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 310 (782)
+..+++++||++.|+|+++... +......+||+|.
T Consensus 94 ~~~~~~~~lG~~~i~L~~~~~~--~~~~~~~~W~~l~ 128 (128)
T cd08392 94 RTLKRRVFLGEVLIPLADWDFE--DTDSQRFLWYPLN 128 (128)
T ss_pred CCCcCcceEEEEEEEcCCcccC--CCCccccceEECc
Confidence 9989999999999999998643 3345688999983
No 79
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.72 E-value=3.9e-17 Score=152.79 Aligned_cols=102 Identities=28% Similarity=0.475 Sum_probs=88.0
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEec---------------cCCCC
Q 003975 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKE---------------RLQSS 101 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~---------------~~~~~ 101 (782)
|.|+|++|++|+. .+|.+||||+|++.+ ++++|+++++|.||+|||+|.|.+. +....
T Consensus 2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred EEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence 7999999999998 578999999999976 5689999999999999999999984 22346
Q ss_pred eEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCC
Q 003975 102 LLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKK 149 (782)
Q Consensus 102 ~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
.|.|.|||++.. +|++||++.|++.++.... .....||+|.+..
T Consensus 80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~----~~~~~W~~L~~~~ 124 (148)
T cd04010 80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQA----GSHQAWYFLQPRE 124 (148)
T ss_pred EEEEEEEcCCCCCCCceeEEEEEecccccccC----CcCcceeecCCcc
Confidence 799999999988 9999999999999998651 1357899998764
No 80
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.72 E-value=4.8e-17 Score=149.44 Aligned_cols=118 Identities=31% Similarity=0.378 Sum_probs=97.6
Q ss_pred cCCCceeeeeccccceeEEEEEEEEeeCCCCCCCC-CCCCcEEEEEECC---eEeeeccccCCCCCccccEEEEE-ec--
Q 003975 24 RGGDKTASTYDLVELMHYLCVNVVKARNLPVMDVS-GSLDPYVEVKLGN---YKGITKHLEKNQNPVWNQIFAFS-KE-- 96 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~~---~~~kT~~i~~t~nP~Wne~f~f~-~~-- 96 (782)
+|..++++.|+. ..+.|.|+|++|+||+..+.. |.+||||++.+.+ ++.||+++++|.||+|||+|.|. +.
T Consensus 2 ~G~l~~~l~y~~--~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~ 79 (128)
T cd08388 2 LGTLFFSLRYNS--EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYN 79 (128)
T ss_pred CeEEEEEEEEEC--CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHH
Confidence 355678888777 457999999999999998876 8999999999963 46799999999999999999993 43
Q ss_pred cCCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEec
Q 003975 97 RLQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 97 ~~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
+.....|.|+|||++.. +|++||++.++|+++...... ....|.+|+
T Consensus 80 ~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~---~~~~~~~~~ 127 (128)
T cd08388 80 QLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEG---ELLVSREIQ 127 (128)
T ss_pred HhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCc---eEEEEEecc
Confidence 33456799999999988 999999999999999765221 266788875
No 81
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.72 E-value=4e-17 Score=146.77 Aligned_cols=100 Identities=16% Similarity=0.331 Sum_probs=86.5
Q ss_pred EEEEEEEEeecCCCCccCCCCCC-CcEEEEEE-C----C--EEEeecccCCCCCCeeccEEEEEeeCC----CceEEEEE
Q 003975 368 TLELGILSAKNLMQMKSKDGKLT-DAYCVAKY-G----N--KWIRTRTILDTLAPRWNEQYTWDVYDP----CTVITIGV 435 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~-~----~--~~~rT~~~~~t~~P~wne~~~f~v~~~----~~~l~i~v 435 (782)
.|+|+|++|+||+..+ .|. ||||+|++ | . ++++|+++.+|+||+|||.|+|.+... ...|.|.|
T Consensus 1 kL~V~Vi~A~~L~~~d----~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V 76 (120)
T cd08395 1 KVTVKVVAANDLKWQT----TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICV 76 (120)
T ss_pred CEEEEEEECcCCCccc----CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEE
Confidence 4899999999999864 266 99999997 3 2 357999999999999999999999742 34799999
Q ss_pred EeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeee
Q 003975 436 FDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLL 477 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 477 (782)
||++..+ +|++||++.|+|+++..++....|++|..
T Consensus 77 ~D~d~~~------~dd~IG~~~l~l~~~~~~~~~~~w~~L~~ 112 (120)
T cd08395 77 KDYCFAR------DDRLVGVTVLQLRDIAQAGSCACWLPLGR 112 (120)
T ss_pred EEecccC------CCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence 9998654 79999999999999999999999999974
No 82
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.72 E-value=5.1e-17 Score=149.44 Aligned_cols=114 Identities=41% Similarity=0.613 Sum_probs=95.3
Q ss_pred CCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEecc--
Q 003975 25 GGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKER-- 97 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~-- 97 (782)
|...+++.|+- ..+.|.|+|++|++|+..+..+.+||||+|.+.+ .+++|++++++.||+|||+|.|.+..
T Consensus 3 G~l~~~l~~~~--~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~ 80 (125)
T cd04031 3 GRIQIQLWYDK--VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRE 80 (125)
T ss_pred EEEEEEEEEeC--CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHH
Confidence 44566666665 5578999999999999999889999999999964 57899999999999999999998532
Q ss_pred -CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEec
Q 003975 98 -LQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 98 -~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
.....|.|+|||++.. ++++||++.++|++.... ....||+|+
T Consensus 81 ~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~~------~~~~W~~L~ 125 (125)
T cd04031 81 TLKERTLEVTVWDYDRDGENDFLGEVVIDLADALLD------DEPHWYPLQ 125 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeeEEEEeccccccc------CCcceEECc
Confidence 3467899999999988 899999999999993322 146899985
No 83
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.72 E-value=4.8e-17 Score=149.38 Aligned_cols=119 Identities=32% Similarity=0.333 Sum_probs=99.8
Q ss_pred eeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC--EEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCC
Q 003975 366 IGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN--KWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVN 442 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~--~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~ 442 (782)
+|.|+|+|++|+||+..+. ..+. ||||++++++ +..+|+++.++.||.|||.|.|.+......|.|+|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~~--~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDI--IGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCcccc--cCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCC
Confidence 4899999999999996542 2355 9999999987 789999999999999999999999866789999999998765
Q ss_pred CCCCCCCCCccEEEEEEcccccCCceEEE-EEeeeecCCCCCCcCcEEEEEEEEE
Q 003975 443 GSKDDAKDQRIGKVRIRLSTLETDRIYTH-YYPLLLLTPSGLKNNGELHLALRFT 496 (782)
Q Consensus 443 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~-w~~L~~~~~~g~~~~G~i~l~~~~~ 496 (782)
+|++||++.++|.++..+..... |+++. .+.+..|+|+++++|.
T Consensus 79 ------~d~~iG~~~~~l~~l~~~~~~~~~~~~~~----~~~k~~G~i~~~l~~~ 123 (124)
T cd04044 79 ------KDKLIGTAEFDLSSLLQNPEQENLTKNLL----RNGKPVGELNYDLRFF 123 (124)
T ss_pred ------CCceeEEEEEEHHHhccCccccCcchhhh----cCCccceEEEEEEEeC
Confidence 89999999999999988776653 45553 2334579999999873
No 84
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.72 E-value=1e-16 Score=148.35 Aligned_cols=125 Identities=25% Similarity=0.419 Sum_probs=103.6
Q ss_pred eeEEEEEEEEeecCCCCccCCCCCCCcEEEEEECCEE-EeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCCC
Q 003975 366 IGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKW-IRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGS 444 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~~~-~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~ 444 (782)
...|.|.|++|+||++++ ||||.|.++++. .||+++.++.||.|||.|.|++..+...|.|.||+.+...
T Consensus 10 ~~sL~v~V~EAk~Lp~~~-------~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~-- 80 (146)
T cd04013 10 ENSLKLWIIEAKGLPPKK-------RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKK-- 80 (146)
T ss_pred EEEEEEEEEEccCCCCcC-------CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcc--
Confidence 358999999999998642 799999999977 6999999999999999999987777788999998765321
Q ss_pred CCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCC-------CCcCcEEEEEEEEEEcc
Q 003975 445 KDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSG-------LKNNGELHLALRFTCTA 499 (782)
Q Consensus 445 ~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g-------~~~~G~i~l~~~~~~~~ 499 (782)
....++++||++.|++.++..+...++||||.....+. ....++|+++++|+...
T Consensus 81 ~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~ 142 (146)
T cd04013 81 KKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR 142 (146)
T ss_pred ccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence 01226899999999999999999999999999866543 23457999999997654
No 85
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.72 E-value=5e-17 Score=147.08 Aligned_cols=100 Identities=19% Similarity=0.317 Sum_probs=85.9
Q ss_pred eEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC-----EEEeecccCCCCCCeeccEEEEEeeCC--CceEEEEEEeC
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLAPRWNEQYTWDVYDP--CTVITIGVFDN 438 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~~~rT~~~~~t~~P~wne~~~f~v~~~--~~~l~i~v~d~ 438 (782)
+.|.|+|++|+||++++ . |. ||||++++.+ .+.||+++.++.||+|||.|.|++... ...|.|+|||.
T Consensus 12 ~~L~V~Vi~ar~L~~~~-~---g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~ 87 (119)
T cd08685 12 RKLTLHVLEAKGLRSTN-S---GTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNK 87 (119)
T ss_pred CEEEEEEEEEECCCCCC-C---CCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECC
Confidence 69999999999999875 2 55 9999999953 367999999999999999999998653 45799999999
Q ss_pred CcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEee
Q 003975 439 CYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPL 475 (782)
Q Consensus 439 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L 475 (782)
+..+ ..+++||.+.|+|.++..+....+||.|
T Consensus 88 ~~~~-----~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 88 LSKS-----RDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCCc-----CCCEEEEEEEecHHHhccCccccceEeC
Confidence 8653 1478999999999999888888999986
No 86
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.72 E-value=6.8e-17 Score=148.60 Aligned_cols=114 Identities=22% Similarity=0.341 Sum_probs=94.2
Q ss_pred cceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC-----E
Q 003975 328 SSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN-----K 401 (782)
Q Consensus 328 ~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~ 401 (782)
.|+|.+++.+. +..|.|.|+|++|+||+.++.. +. ||||+|.+.+ .
T Consensus 2 ~G~l~~~l~~~-------------------------~~~~~L~V~vi~a~~L~~~~~~---~~~dpyv~v~l~~~~~~~~ 53 (125)
T cd04031 2 TGRIQIQLWYD-------------------------KVTSQLIVTVLQARDLPPRDDG---SLRNPYVKVYLLPDRSEKS 53 (125)
T ss_pred cEEEEEEEEEe-------------------------CCCCEEEEEEEEecCCCCcCCC---CCCCCEEEEEEccCCCccc
Confidence 48888888763 3347999999999999988643 55 9999999964 5
Q ss_pred EEeecccCCCCCCeeccEEEEEeeC----CCceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeee
Q 003975 402 WIRTRTILDTLAPRWNEQYTWDVYD----PCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLL 476 (782)
Q Consensus 402 ~~rT~~~~~t~~P~wne~~~f~v~~----~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 476 (782)
..||++++++.||+|||.|.|.+.. ....|.|+|||++.++ +|++||++.++|++... ....+||+|+
T Consensus 54 ~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~------~~~~iG~~~i~l~~~~~-~~~~~W~~L~ 125 (125)
T cd04031 54 KRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDG------ENDFLGEVVIDLADALL-DDEPHWYPLQ 125 (125)
T ss_pred cccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCCCC------CCcEeeEEEEecccccc-cCCcceEECc
Confidence 7899999999999999999998754 2468999999999765 89999999999999432 2347899984
No 87
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.71 E-value=6.9e-17 Score=143.35 Aligned_cols=94 Identities=23% Similarity=0.306 Sum_probs=83.2
Q ss_pred eEEEEEEEEeeCCCCCCCC----CCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccC-CCCeEEEEEEeCCCC-
Q 003975 40 HYLCVNVVKARNLPVMDVS----GSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERL-QSSLLEVTVKDKDIG- 113 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~----g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~-~~~~L~i~V~d~d~~- 113 (782)
|+|.|+|++|++|+..+.. +.+||||+|.++++++||++++++.||+|||.|.|.+.+. ....|.|+|||++..
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 6899999999999987632 4589999999999999999999999999999999998643 345899999999988
Q ss_pred CCceeEEEEEEccccCCCCC
Q 003975 114 KDDFVGRVSLDLSQVPLRVP 133 (782)
Q Consensus 114 ~d~~lG~~~v~l~~l~~~~~ 133 (782)
+|++||++.++|++|..+.+
T Consensus 81 ~dd~IG~~~l~L~~l~~~~~ 100 (108)
T cd04039 81 FNDYVATGSLSVQELLNAAP 100 (108)
T ss_pred CCcceEEEEEEHHHHHhhCC
Confidence 99999999999999987644
No 88
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.71 E-value=7.5e-17 Score=146.31 Aligned_cols=112 Identities=25% Similarity=0.397 Sum_probs=95.4
Q ss_pred ceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC------eEeeeccccCCCCCccccEEEEEec--cCC
Q 003975 28 KTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN------YKGITKHLEKNQNPVWNQIFAFSKE--RLQ 99 (782)
Q Consensus 28 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~------~~~kT~~i~~t~nP~Wne~f~f~~~--~~~ 99 (782)
.+++.|+- ..+.|.|+|++|+||+..+..|.+||||++.+-. .+++|++++++.||+|||+|.|++. ++.
T Consensus 4 ~~sL~Y~~--~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~ 81 (124)
T cd08680 4 QIGLRYDS--GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLY 81 (124)
T ss_pred EEEEEECC--CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhh
Confidence 45556655 5679999999999999998889999999999842 3689999999999999999999985 456
Q ss_pred CCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEe
Q 003975 100 SSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRL 145 (782)
Q Consensus 100 ~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L 145 (782)
...|.|.|||++.. ++++||++.|+|+++..... ...+||+|
T Consensus 82 ~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~----~~~~Wy~l 124 (124)
T cd08680 82 QKTLQVDVCSVGPDQQEECLGGAQISLADFESSEE----MSTKWYNL 124 (124)
T ss_pred cCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCc----cccccccC
Confidence 78999999999988 99999999999999965422 36789876
No 89
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.71 E-value=7.1e-17 Score=148.38 Aligned_cols=118 Identities=21% Similarity=0.328 Sum_probs=102.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEeeecccc-CCCCCccccEEEEEeccCC----CCeEEEEEEeCCCC-
Q 003975 41 YLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-YKGITKHLE-KNQNPVWNQIFAFSKERLQ----SSLLEVTVKDKDIG- 113 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~kT~~i~-~t~nP~Wne~f~f~~~~~~----~~~L~i~V~d~d~~- 113 (782)
.|.|+|++|++|+..+..+.+||||+|++++ ++.+|+++. ++.||.|||+|.|.+.... ...|.|+|||++..
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 3789999999999999889999999999998 889999985 5799999999999997653 68899999999986
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEE
Q 003975 114 KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIML 160 (782)
Q Consensus 114 ~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l 160 (782)
+|++||++.+++.++......+......||+|...+|.. .|.|.+
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~--~G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKP--QGVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCc--CeEEeC
Confidence 899999999999999986543334567899999987764 898864
No 90
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.71 E-value=1e-16 Score=147.78 Aligned_cols=105 Identities=21% Similarity=0.271 Sum_probs=89.6
Q ss_pred ceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEEC-----CEEEeecccCCCCCCeeccEEEEEeeCC---CceEEEEE
Q 003975 365 SIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYG-----NKWIRTRTILDTLAPRWNEQYTWDVYDP---CTVITIGV 435 (782)
Q Consensus 365 ~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~-----~~~~rT~~~~~t~~P~wne~~~f~v~~~---~~~l~i~v 435 (782)
..+.|+|+|++|+||+..+. .+. ||||+|.+. ...+||++++++.||+|||.|.|.+... ...|.|.|
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~---~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v 90 (127)
T cd04030 14 QRQKLIVTVHKCRNLPPCDS---SDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAV 90 (127)
T ss_pred CCCEEEEEEEEEECCCCccC---CCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEE
Confidence 34799999999999998864 255 999999984 4679999999999999999999998643 46899999
Q ss_pred EeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeee
Q 003975 436 FDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLL 476 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 476 (782)
||++.+. ..+|++||.+.|+|.++..+....+||+|.
T Consensus 91 ~~~~~~~----~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 91 KNSKSFL----SREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred EECCccc----CCCCceEEEEEEecccccccCCccceEECc
Confidence 9998641 127999999999999998888889999984
No 91
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.71 E-value=1.8e-16 Score=147.05 Aligned_cols=117 Identities=23% Similarity=0.357 Sum_probs=99.8
Q ss_pred eeEEEEEEEEeecCCCCccCC-------CCCC-CcEEEEEECCEE-EeecccCCCCCCeeccEEEEEeeCCCceEEEEEE
Q 003975 366 IGTLELGILSAKNLMQMKSKD-------GKLT-DAYCVAKYGNKW-IRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVF 436 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~-------~~~~-dpyv~v~~~~~~-~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~ 436 (782)
.|.|+|+|++|+||...+... +.+. ||||++.++++. .+|++++++.||.|||.|.|.+. ....|.|.||
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~ 81 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVF 81 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEE
Confidence 489999999999999876420 1256 999999998865 79999999999999999999997 4579999999
Q ss_pred eCCcCCCCCCCCCCCccEEEEEEcccccC--CceEEEEEeeeecCCCCCCcCcEEEEEEEEEE
Q 003975 437 DNCYVNGSKDDAKDQRIGKVRIRLSTLET--DRIYTHYYPLLLLTPSGLKNNGELHLALRFTC 497 (782)
Q Consensus 437 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~--~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~~~ 497 (782)
|++.++ +|++||++.++|+++.. +.....|++|.. .|+|++++.+..
T Consensus 82 d~~~~~------~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~--------~G~l~l~~~~~~ 130 (132)
T cd04014 82 HDAAIG------PDDFVANCTISFEDLIQRGSGSFDLWVDLEP--------QGKLHVKIELKG 130 (132)
T ss_pred eCCCCC------CCceEEEEEEEhHHhcccCCCcccEEEEccC--------CcEEEEEEEEec
Confidence 998765 78999999999999987 566799999962 599999988753
No 92
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.71 E-value=7.3e-17 Score=146.02 Aligned_cols=102 Identities=24% Similarity=0.414 Sum_probs=87.1
Q ss_pred ceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEeccC-CCCeEEEEEEeCC
Q 003975 38 LMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKERL-QSSLLEVTVKDKD 111 (782)
Q Consensus 38 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~~-~~~~L~i~V~d~d 111 (782)
..+.|.|+|++|+||+.++ .|.+||||++++.+ .++||++++++.||+|||+|.|.+... ....|.|+|||++
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 4578999999999999998 88999999999964 367999999999999999999998531 2357899999999
Q ss_pred CC--CCceeEEEEEEccccCCCCCCCCCCCCEEEEe
Q 003975 112 IG--KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRL 145 (782)
Q Consensus 112 ~~--~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L 145 (782)
.. ++++||.+.|++.++..+. ....||.|
T Consensus 89 ~~~~~~~~lG~~~i~l~~~~~~~-----~~~~Wy~l 119 (119)
T cd08685 89 SKSRDSGLLGCMSFGVKSIVNQK-----EISGWYYL 119 (119)
T ss_pred CCcCCCEEEEEEEecHHHhccCc-----cccceEeC
Confidence 87 4789999999999997542 36789986
No 93
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.71 E-value=8.4e-17 Score=144.43 Aligned_cols=107 Identities=27% Similarity=0.405 Sum_probs=94.5
Q ss_pred CceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeeecccCCCCCCcccceeEEEecCCC----CCeEEEEEEEcc
Q 003975 199 PKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNEEHMFVASEPF----EDLIIVTVEDRI 274 (782)
Q Consensus 199 p~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~~~~t~nP~wne~f~f~v~~~~----~~~l~i~V~d~~ 274 (782)
|+.+.|+|+|++|++|+ ++.+||||++++++++++|+++++ +.||.|||+|.|.+..+. ...|.|+|||++
T Consensus 1 ~~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~ 75 (111)
T cd04011 1 PQDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKG-TNCPFYNEYFFFNFHESPDELFDKIIKISVYDSR 75 (111)
T ss_pred CCcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEec-cCCCccccEEEEecCCCHHHHhcCeEEEEEEcCc
Confidence 46788999999999998 577999999999999999999886 999999999999986543 468999999999
Q ss_pred CCCCCceeEEEEEeCCCcccccCCCCCCCCceEEccCC
Q 003975 275 RPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKP 312 (782)
Q Consensus 275 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 312 (782)
..+++++||++.++++++... +.+....+|++|.++
T Consensus 76 ~~~~~~~iG~~~i~l~~v~~~--~~~~~~~~w~~L~~~ 111 (111)
T cd04011 76 SLRSDTLIGSFKLDVGTVYDQ--PDHAFLRKWLLLTDP 111 (111)
T ss_pred ccccCCccEEEEECCccccCC--CCCcceEEEEEeeCc
Confidence 888899999999999999865 566788999999764
No 94
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.71 E-value=5.7e-17 Score=151.66 Aligned_cols=115 Identities=22% Similarity=0.299 Sum_probs=93.6
Q ss_pred EEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC-----EEEeecccCCCCCCeeccEEEEEee---------------C
Q 003975 368 TLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLAPRWNEQYTWDVY---------------D 426 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~~~rT~~~~~t~~P~wne~~~f~v~---------------~ 426 (782)
.|.|+|++|+||+. . .|. ||||+|.+.+ ...||+++++|.||+|||.|.|++. +
T Consensus 1 kL~V~Vi~ArnL~~--~---~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~ 75 (148)
T cd04010 1 KLSVRVIECSDLAL--K---NGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEED 75 (148)
T ss_pred CEEEEEEeCcCCCC--C---CCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCccc
Confidence 37899999999987 1 256 9999999966 5789999999999999999999995 1
Q ss_pred C-CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCC-ceEEEEEeeeecCCCC---------CCcCcEEEEEE
Q 003975 427 P-CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETD-RIYTHYYPLLLLTPSG---------LKNNGELHLAL 493 (782)
Q Consensus 427 ~-~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~-~~~~~w~~L~~~~~~g---------~~~~G~i~l~~ 493 (782)
. ...|.|.|||++.++ .|++||++.|+|+.+..+ .....||+|.....+. ....|.|+|++
T Consensus 76 ~~~~~L~i~V~d~~~~~------~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 76 AEKLELRVDLWHASMGG------GDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI 147 (148)
T ss_pred ccEEEEEEEEEcCCCCC------CCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence 1 247999999998765 899999999999999887 5678999998643321 23467777764
No 95
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.71 E-value=9.9e-17 Score=143.58 Aligned_cols=104 Identities=38% Similarity=0.595 Sum_probs=91.4
Q ss_pred EEEEEEEeeCCCCCCC-CCCCCcEEEEEECCeEeeeccccCCCCCcc-ccEEEEEeccC--CCCeEEEEEEeCCCC-CCc
Q 003975 42 LCVNVVKARNLPVMDV-SGSLDPYVEVKLGNYKGITKHLEKNQNPVW-NQIFAFSKERL--QSSLLEVTVKDKDIG-KDD 116 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~-~g~~dPyv~v~~~~~~~kT~~i~~t~nP~W-ne~f~f~~~~~--~~~~L~i~V~d~d~~-~d~ 116 (782)
|.|+|++|++|+.++. .|.+||||++++++++++|++++++.||+| ||+|.|.+... ....|.|+|||++.. +++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 5899999999999884 789999999999999999999999999999 99999998642 357899999999988 899
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCEEEEecc
Q 003975 117 FVGRVSLDLSQVPLRVPPDSPLAPQWYRLED 147 (782)
Q Consensus 117 ~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~ 147 (782)
+||++.+++.++.... +......||+|.+
T Consensus 81 ~iG~~~~~l~~l~~~~--~~~~~~~w~~l~~ 109 (110)
T cd08688 81 AIGKVYIDLNPLLLKD--SVSQISGWFPIYD 109 (110)
T ss_pred ceEEEEEeHHHhcccC--CccccCCeEEccc
Confidence 9999999999998742 2234778999976
No 96
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.71 E-value=1.2e-16 Score=146.90 Aligned_cols=116 Identities=36% Similarity=0.495 Sum_probs=98.5
Q ss_pred cCCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CeEeeeccccCCCCCccccEEEEEec---c
Q 003975 24 RGGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLG---NYKGITKHLEKNQNPVWNQIFAFSKE---R 97 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~---~~~~kT~~i~~t~nP~Wne~f~f~~~---~ 97 (782)
.|...+++.|+. ..+.|.|+|++|++|+..+..|.+||||++.+. +++.+|++++++.||+|||+|.|.+. .
T Consensus 2 ~G~l~~~l~y~~--~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~ 79 (125)
T cd08386 2 LGRIQFSVSYDF--QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEK 79 (125)
T ss_pred ccEEEEEEEECC--CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHH
Confidence 355677777765 567999999999999999989999999999993 46789999999999999999999742 2
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEec
Q 003975 98 LQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 98 ~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
.....|.++|||++.. ++++||++.+++.++.... ....|+.|.
T Consensus 80 l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~l~ 124 (125)
T cd08386 80 LQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTE-----EQTFWKDLK 124 (125)
T ss_pred hCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCC-----CcceEEecC
Confidence 3456899999999988 8999999999999998643 367899985
No 97
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.70 E-value=2.3e-16 Score=145.37 Aligned_cols=115 Identities=29% Similarity=0.386 Sum_probs=100.8
Q ss_pred EEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccC--CCCeEEEEEEeCCCC-CCceeEEEE
Q 003975 46 VVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERL--QSSLLEVTVKDKDIG-KDDFVGRVS 122 (782)
Q Consensus 46 v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~--~~~~L~i~V~d~d~~-~d~~lG~~~ 122 (782)
|++|++|+. ..|.+||||++++++.+++|++++++.||+|||+|.|.+... ....|.|+|||++.. +|++||++.
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 789999998 678999999999999999999999999999999999998643 568899999999988 899999999
Q ss_pred EEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEecccC
Q 003975 123 LDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQA 168 (782)
Q Consensus 123 v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~~~ 168 (782)
++++++..+. ....|++|.+.++.. ..|+|+++++|.+..
T Consensus 80 ~~l~~l~~~~-----~~~~~~~L~~~~~~~-~~~~l~l~~~~~~~~ 119 (127)
T cd08373 80 VSLQDLVSEG-----LLEVTEPLLDSNGRP-TGATISLEVSYQPPD 119 (127)
T ss_pred EEhhHcccCC-----ceEEEEeCcCCCCCc-ccEEEEEEEEEeCCC
Confidence 9999998653 367899998776654 579999999997643
No 98
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.70 E-value=9.8e-17 Score=142.38 Aligned_cols=95 Identities=21% Similarity=0.322 Sum_probs=83.1
Q ss_pred eEEEEEEEEeecCCCCccCC-CCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCC--CceEEEEEEeCCcCC
Q 003975 367 GTLELGILSAKNLMQMKSKD-GKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDP--CTVITIGVFDNCYVN 442 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~-~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~--~~~l~i~v~d~~~~~ 442 (782)
|.|.|+|++|+||++.+... .++. ||||+|+++++.+||++++++.||+|||.|.|.+.+. ...|.|+|||++.++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 78999999999999986431 2234 9999999999999999999999999999999999753 458999999999876
Q ss_pred CCCCCCCCCccEEEEEEcccccCCc
Q 003975 443 GSKDDAKDQRIGKVRIRLSTLETDR 467 (782)
Q Consensus 443 ~~~~~~~d~~lG~~~i~l~~l~~~~ 467 (782)
.|++||++.++|++|..+.
T Consensus 81 ------~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 81 ------FNDYVATGSLSVQELLNAA 99 (108)
T ss_pred ------CCcceEEEEEEHHHHHhhC
Confidence 8999999999999997654
No 99
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.70 E-value=5.8e-17 Score=145.06 Aligned_cols=101 Identities=26% Similarity=0.440 Sum_probs=89.0
Q ss_pred EEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCee-ccEEEEEeeCC---CceEEEEEEeCCcCCC
Q 003975 369 LELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRW-NEQYTWDVYDP---CTVITIGVFDNCYVNG 443 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~w-ne~~~f~v~~~---~~~l~i~v~d~~~~~~ 443 (782)
|+|+|++|+||+.++. ..+. ||||+++++++.+||++++++.||.| ||.|.|.+... ...|.|+|||++.++
T Consensus 1 l~V~v~~a~~L~~~d~--~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~- 77 (110)
T cd08688 1 LKVRVVAARDLPVMDR--SSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS- 77 (110)
T ss_pred CEEEEEEEECCCcccc--CCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC-
Confidence 5799999999998763 2355 99999999999999999999999999 99999999763 468999999999876
Q ss_pred CCCCCCCCccEEEEEEcccccC---CceEEEEEeeee
Q 003975 444 SKDDAKDQRIGKVRIRLSTLET---DRIYTHYYPLLL 477 (782)
Q Consensus 444 ~~~~~~d~~lG~~~i~l~~l~~---~~~~~~w~~L~~ 477 (782)
+|++||++.++++++.. +..+..||+|.+
T Consensus 78 -----~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 78 -----ANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred -----CCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 88999999999999977 456899999964
No 100
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.70 E-value=1.5e-16 Score=146.80 Aligned_cols=115 Identities=34% Similarity=0.479 Sum_probs=97.8
Q ss_pred CCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeEeeeccccCCCCCccccEEEEEec--c
Q 003975 25 GGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLG-----NYKGITKHLEKNQNPVWNQIFAFSKE--R 97 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~kT~~i~~t~nP~Wne~f~f~~~--~ 97 (782)
|..++++.|+- ..+.|.|+|++|+||+..+..+.+||||+|.+. ..+++|++++++.||+|||+|.|.+. +
T Consensus 3 G~l~~~l~y~~--~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~ 80 (127)
T cd04030 3 GRIQLTIRYSS--QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEE 80 (127)
T ss_pred eEEEEEEEEeC--CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHH
Confidence 44566777665 567999999999999999988999999999995 35789999999999999999999985 3
Q ss_pred CCCCeEEEEEEeCCCC---CCceeEEEEEEccccCCCCCCCCCCCCEEEEec
Q 003975 98 LQSSLLEVTVKDKDIG---KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 98 ~~~~~L~i~V~d~d~~---~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
+....|.|.|||++.. ++++||++.+++.++..+. ....||+|+
T Consensus 81 l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L~ 127 (127)
T cd04030 81 LKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSK-----GFTQWYDLT 127 (127)
T ss_pred hcCCEEEEEEEECCcccCCCCceEEEEEEecccccccC-----CccceEECc
Confidence 4467899999999873 8999999999999996643 367899984
No 101
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.70 E-value=1.4e-16 Score=144.59 Aligned_cols=104 Identities=17% Similarity=0.270 Sum_probs=88.2
Q ss_pred cCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEEC------CEEEeecccCCCCCCeeccEEEEEeeC---CCceEE
Q 003975 363 KGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYG------NKWIRTRTILDTLAPRWNEQYTWDVYD---PCTVIT 432 (782)
Q Consensus 363 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~------~~~~rT~~~~~t~~P~wne~~~f~v~~---~~~~l~ 432 (782)
.+..+.|.|+|++|+||++++. .+. ||||++++- ..+.||++++++.||+|||.|.|++.. ....|.
T Consensus 10 ~~~~~~L~V~V~~arnL~~~~~---~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~ 86 (124)
T cd08680 10 DSGDSSLVISVEQLRNLSALSI---PENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQ 86 (124)
T ss_pred CCCCCEEEEEEeEecCCccccc---CCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEE
Confidence 3445799999999999998853 355 999999982 247999999999999999999999874 356999
Q ss_pred EEEEeCCcCCCCCCCCCCCccEEEEEEcccccCC-ceEEEEEee
Q 003975 433 IGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETD-RIYTHYYPL 475 (782)
Q Consensus 433 i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~-~~~~~w~~L 475 (782)
|+|||.+.++ .+++||.+.|+|+++... ....+||+|
T Consensus 87 ~~V~~~~~~~------~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 87 VDVCSVGPDQ------QEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred EEEEeCCCCC------ceeEEEEEEEEhhhccCCCccccccccC
Confidence 9999998765 899999999999999554 457889986
No 102
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.70 E-value=2.5e-16 Score=144.01 Aligned_cols=115 Identities=23% Similarity=0.321 Sum_probs=97.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEC-CeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-C--Cce
Q 003975 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLG-NYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-K--DDF 117 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~--d~~ 117 (782)
|+|+|++|++|+..+..|.+||||++.++ .+.++|++++++.||.|||+|.|.+.. ...|.|+|||++.. + |++
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d~~ 79 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQGF 79 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCCce
Confidence 78999999999999989999999999997 578899999999999999999999976 67899999999987 3 589
Q ss_pred eEEEEEEccccCCCCCCCCCCCCEEEEeccCCCC--cccceEEEEEE
Q 003975 118 VGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGD--QTTKGEIMLAV 162 (782)
Q Consensus 118 lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~--~~~~G~l~l~~ 162 (782)
||++.+++.++..... ...+|++|...... ....|+|.+++
T Consensus 80 lG~~~i~l~~l~~~~~----~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 80 LGCVRIRANAVLPLKD----TGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred EeEEEEEHHHccccCC----CccceeEeecCCCCCCceEeeEEEEEe
Confidence 9999999999976432 24679999765532 23689988865
No 103
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.70 E-value=2.2e-16 Score=145.18 Aligned_cols=120 Identities=24% Similarity=0.398 Sum_probs=96.5
Q ss_pred EEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCCC--
Q 003975 368 TLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGS-- 444 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~-- 444 (782)
.|+|+|++|+||+..|. .|. ||||+|.++++..+|+++.++.||.|||.|.|.+..+...|.|+|||++.....
T Consensus 2 ~L~V~vi~a~~L~~~d~---~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~ 78 (127)
T cd04027 2 KISITVVCAQGLIAKDK---TGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRL 78 (127)
T ss_pred eEEEEEEECcCCcCCCC---CCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccc
Confidence 68999999999998764 356 999999999999999999999999999999999977777999999999852100
Q ss_pred ---CCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEE
Q 003975 445 ---KDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLAL 493 (782)
Q Consensus 445 ---~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~ 493 (782)
-...+|++||.+.+++.++... ...||+|......+ ...|+|.|++
T Consensus 79 ~~~~~~~~~~~iG~~~i~l~~~~~~--~~~w~~L~~~~~~~-~~~G~i~~~~ 127 (127)
T cd04027 79 KQKFTRESDDFLGQTIIEVRTLSGE--MDVWYNLEKRTDKS-AVSGAIRLHI 127 (127)
T ss_pred ceeccccCCCcceEEEEEhHHccCC--CCeEEECccCCCCC-cEeEEEEEEC
Confidence 0013799999999999998644 47899998644322 3369988863
No 104
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.70 E-value=7.2e-17 Score=144.71 Aligned_cols=100 Identities=29% Similarity=0.442 Sum_probs=87.3
Q ss_pred eEEEEEEEEeeCCCCCCCC-CCCCcEEEEEECC---eEeeeccccCCCCCccccEEEEEeccC---CCCeEEEEEEeCCC
Q 003975 40 HYLCVNVVKARNLPVMDVS-GSLDPYVEVKLGN---YKGITKHLEKNQNPVWNQIFAFSKERL---QSSLLEVTVKDKDI 112 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~~---~~~kT~~i~~t~nP~Wne~f~f~~~~~---~~~~L~i~V~d~d~ 112 (782)
|+|.|+|++|++|+..|.. |.+||||+|++.+ ..++|+++++|.||+|||+|.|.+... ....|.|+|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 6899999999999999987 9999999999953 468999999999999999999987543 35789999999999
Q ss_pred C-CCceeEEEEEEccccCCCCCCCCCCCCEEEEecc
Q 003975 113 G-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLED 147 (782)
Q Consensus 113 ~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~ 147 (782)
. +|++||++.+++.++.. ...|+++..
T Consensus 81 ~~~dd~lG~~~i~l~~l~~--------~~~~~~~~~ 108 (111)
T cd04041 81 FTADDRLGRVEIDLKELIE--------DRNWMGRRE 108 (111)
T ss_pred CCCCCcceEEEEEHHHHhc--------CCCCCcccc
Confidence 8 89999999999999985 345777653
No 105
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.70 E-value=2.1e-16 Score=145.28 Aligned_cols=115 Identities=23% Similarity=0.317 Sum_probs=97.7
Q ss_pred cceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEE---CCEEE
Q 003975 328 SSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKY---GNKWI 403 (782)
Q Consensus 328 ~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~---~~~~~ 403 (782)
.|+|++++.+. +..+.|.|+|++|+||+..+.. +. ||||++.+ +++..
T Consensus 2 ~G~l~~~l~y~-------------------------~~~~~L~v~v~~a~~L~~~d~~---~~~dpyv~v~~~~~~~~~~ 53 (125)
T cd08386 2 LGRIQFSVSYD-------------------------FQESTLTLKILKAVELPAKDFS---GTSDPFVKIYLLPDKKHKL 53 (125)
T ss_pred ccEEEEEEEEC-------------------------CCCCEEEEEEEEecCCCCccCC---CCCCceEEEEECCCCCcce
Confidence 48888888762 3346999999999999987643 55 99999998 34679
Q ss_pred eecccCCCCCCeeccEEEEEeeC----CCceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeee
Q 003975 404 RTRTILDTLAPRWNEQYTWDVYD----PCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLL 476 (782)
Q Consensus 404 rT~~~~~t~~P~wne~~~f~v~~----~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 476 (782)
||++++++.||.|||.|.|.+.. ....|.++|||++.++ ++++||.+.|+|+++..+...+.|++|.
T Consensus 54 kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~------~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 54 ETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFS------RNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred eeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCCc------CCcEeeEEEEecccccCCCCcceEEecC
Confidence 99999999999999999998532 2357999999999876 8899999999999999888899999985
No 106
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.70 E-value=3.2e-16 Score=143.98 Aligned_cols=116 Identities=17% Similarity=0.207 Sum_probs=95.2
Q ss_pred cceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEEC---CEEE
Q 003975 328 SSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYG---NKWI 403 (782)
Q Consensus 328 ~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~---~~~~ 403 (782)
.|+|.+++.+.. ..+.|+|+|++|+||+..+.. .+. ||||++.+. .+..
T Consensus 2 ~G~l~~~l~y~~-------------------------~~~~L~V~Vi~a~~L~~~~~~--~~~~DpyV~v~l~~~~~~~~ 54 (128)
T cd08388 2 LGTLFFSLRYNS-------------------------EKKALLVNIIECRDLPAMDEQ--SGTSDPYVKLQLLPEKEHKV 54 (128)
T ss_pred CeEEEEEEEEEC-------------------------CCCEEEEEEEEeECCCCCCCC--CCCcCCEEEEEEeCCcCcee
Confidence 488888887633 346999999999999987532 255 999999985 3568
Q ss_pred eecccCCCCCCeeccEEEEE-eeC---CCceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCC--ceEEEEEeee
Q 003975 404 RTRTILDTLAPRWNEQYTWD-VYD---PCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETD--RIYTHYYPLL 476 (782)
Q Consensus 404 rT~~~~~t~~P~wne~~~f~-v~~---~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~w~~L~ 476 (782)
||++++++.||+|||+|.|. +.. ....|.|+|||++.++ +|++||++.|+|+++... +....|.+|.
T Consensus 55 kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~~------~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 55 KTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYS------RDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred eccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCCC------CCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 99999999999999999994 431 2347999999999876 899999999999999654 6789999885
No 107
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.69 E-value=1.8e-16 Score=145.26 Aligned_cols=103 Identities=21% Similarity=0.359 Sum_probs=88.5
Q ss_pred ceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC-----EEEeecccCCCCCCeeccEEEEEeeCC---CceEEEEE
Q 003975 365 SIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLAPRWNEQYTWDVYDP---CTVITIGV 435 (782)
Q Consensus 365 ~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~~~rT~~~~~t~~P~wne~~~f~v~~~---~~~l~i~v 435 (782)
..|.|.|+|++|+||+..+. ..+. ||||++.+.+ ...||++++++.||+|||.|.|.+... ...|.|+|
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~--~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v 89 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADE--KKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSV 89 (123)
T ss_pred CCCEEEEEEEEecCCCCcCC--CCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 35799999999999998762 2356 9999998832 468999999999999999999998752 46899999
Q ss_pred EeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEee
Q 003975 436 FDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPL 475 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L 475 (782)
||++.++ ++++||.+.++|+++..+...+.||+|
T Consensus 90 ~d~~~~~------~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 90 WHHDRFG------RNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EeCCCCc------CCceeeEEEEecccccccCCCccEEEC
Confidence 9999776 889999999999999877778999987
No 108
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.69 E-value=2e-16 Score=146.02 Aligned_cols=116 Identities=18% Similarity=0.241 Sum_probs=94.4
Q ss_pred ceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCCCcEEEEEECC-----EEE
Q 003975 329 SKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGN-----KWI 403 (782)
Q Consensus 329 G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~-----~~~ 403 (782)
|+|.+++++ .+..|.|.|.|++|+||+++|.....+.||||+|++.. .+.
T Consensus 2 Gel~~sL~Y-------------------------~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kk 56 (138)
T cd08407 2 GEVLLSISY-------------------------LPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKK 56 (138)
T ss_pred CEEEEEEEE-------------------------eCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCccccee
Confidence 889999986 34557999999999999998732112359999999843 257
Q ss_pred eecccCCCCCCeeccEEEEEeeCC---CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeee
Q 003975 404 RTRTILDTLAPRWNEQYTWDVYDP---CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLL 477 (782)
Q Consensus 404 rT~~~~~t~~P~wne~~~f~v~~~---~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 477 (782)
||++++++.||+|||.|.|.+... ...|.|+|||++.++ ++++||++.+++.. .|....+|..+..
T Consensus 57 kT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~~~------~~d~iG~v~lg~~~--~g~~~~hW~~ml~ 125 (138)
T cd08407 57 QTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQDSPG------QSLPLGRCSLGLHT--SGTERQHWEEMLD 125 (138)
T ss_pred ccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCCCCc------CcceeceEEecCcC--CCcHHHHHHHHHh
Confidence 999999999999999999998752 568999999999876 89999999999976 4445567777654
No 109
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.69 E-value=1.8e-16 Score=151.45 Aligned_cols=118 Identities=34% Similarity=0.429 Sum_probs=97.7
Q ss_pred CCCceeeeecccc----------ceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeEeeeccccCCCCCcccc
Q 003975 25 GGDKTASTYDLVE----------LMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLG-----NYKGITKHLEKNQNPVWNQ 89 (782)
Q Consensus 25 ~~~~~~~~~~~~~----------~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~kT~~i~~t~nP~Wne 89 (782)
|...++..|.-.. ..|.|.|+|++|+||+..+..|.+||||+|++. .++++|+++++|.||+|||
T Consensus 2 G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE 81 (162)
T cd04020 2 GELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNH 81 (162)
T ss_pred ceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCC
Confidence 4455666665533 668999999999999999989999999999983 2578999999999999999
Q ss_pred EEEEEec---cCCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEecc
Q 003975 90 IFAFSKE---RLQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLED 147 (782)
Q Consensus 90 ~f~f~~~---~~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~ 147 (782)
+|.|.+. +.....|.|+|||++.. ++++||++.+++.++..... ...|+.|.+
T Consensus 82 ~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~-----~~~w~~~~~ 138 (162)
T cd04020 82 TFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQ-----AVDWMDSTG 138 (162)
T ss_pred EEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCC-----ccccccCCh
Confidence 9999842 34456899999999988 89999999999999875432 567888764
No 110
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.69 E-value=1.4e-16 Score=141.37 Aligned_cols=102 Identities=22% Similarity=0.396 Sum_probs=92.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeeecccCCCCCCcccceeEEEecCCCCCeEEEEEEEccCCCCCceeE
Q 003975 204 LRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIRPGKDEILG 283 (782)
Q Consensus 204 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d~~iG 283 (782)
|.|+|++|++|+..+..+.+||||+++++++.++|+++++ +.||.|||.|.|.+..+..+.|.|+|+|++. +++||
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~-t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG 77 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKER-TNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG 77 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccC-CCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence 8899999999999988899999999999999999999886 9999999999999998778899999999875 88999
Q ss_pred EEEEeCCCcccccCCCCCCCCceEEccCC
Q 003975 284 RELIPVRNVPQRHETTKLPDPRWFNLHKP 312 (782)
Q Consensus 284 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 312 (782)
++.++|.++... ......+||+|.+.
T Consensus 78 ~~~i~l~~l~~~---~~~~~~~w~~L~~~ 103 (105)
T cd04050 78 SLTLPLSELLKE---PDLTLDQPFPLDNS 103 (105)
T ss_pred EEEEEHHHhhcc---ccceeeeeEecCCC
Confidence 999999998853 24568899999865
No 111
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.69 E-value=5.4e-16 Score=143.86 Aligned_cols=115 Identities=28% Similarity=0.418 Sum_probs=99.0
Q ss_pred eEEEEEEEEeeCCCCCCCC----------CCCCcEEEEEECCeE-eeeccccCCCCCccccEEEEEeccCCCCeEEEEEE
Q 003975 40 HYLCVNVVKARNLPVMDVS----------GSLDPYVEVKLGNYK-GITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVK 108 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~----------g~~dPyv~v~~~~~~-~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~ 108 (782)
|.|+|+|++|++|+..|.. |.+||||++.++++. .+|+++.+|.||.|||+|.|.+.+ ...|.|.||
T Consensus 4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~--~~~l~~~v~ 81 (132)
T cd04014 4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN--GRNLELTVF 81 (132)
T ss_pred eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC--CCEEEEEEE
Confidence 7899999999999988852 689999999999864 699999999999999999999974 578999999
Q ss_pred eCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEecc
Q 003975 109 DKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGT 166 (782)
Q Consensus 109 d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~ 166 (782)
|++.. ++++||++.++|.++..+. ......|++|+. .|+|++.+.+..
T Consensus 82 d~~~~~~~~~iG~~~i~l~~l~~~~---~~~~~~w~~L~~-------~G~l~l~~~~~~ 130 (132)
T cd04014 82 HDAAIGPDDFVANCTISFEDLIQRG---SGSFDLWVDLEP-------QGKLHVKIELKG 130 (132)
T ss_pred eCCCCCCCceEEEEEEEhHHhcccC---CCcccEEEEccC-------CcEEEEEEEEec
Confidence 99887 8999999999999998741 123679999973 589999987764
No 112
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.69 E-value=2.8e-16 Score=144.32 Aligned_cols=119 Identities=28% Similarity=0.376 Sum_probs=99.2
Q ss_pred eeEEEEEEEEeeCCCCCC-CCCCCCcEEEEEECC--eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-C
Q 003975 39 MHYLCVNVVKARNLPVMD-VSGSLDPYVEVKLGN--YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-K 114 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~~--~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~ 114 (782)
+|.|.|+|++|++|+..+ ..+.+||||++++++ ..++|+++.++.||.|||.|.|.+.. ....|.|+|||++.. +
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~-~~~~l~~~v~d~~~~~~ 79 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNS-LTEPLNLTVYDFNDKRK 79 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCC-CCCEEEEEEEecCCCCC
Confidence 478999999999999765 457799999999988 78999999999999999999999874 478999999999988 9
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEec
Q 003975 115 DDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMG 165 (782)
Q Consensus 115 d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~ 165 (782)
|++||++.+++.++...... ...|+.+. ..++ ..|+|.+++.|.
T Consensus 80 d~~iG~~~~~l~~l~~~~~~----~~~~~~~~-~~~k--~~G~i~~~l~~~ 123 (124)
T cd04044 80 DKLIGTAEFDLSSLLQNPEQ----ENLTKNLL-RNGK--PVGELNYDLRFF 123 (124)
T ss_pred CceeEEEEEEHHHhccCccc----cCcchhhh-cCCc--cceEEEEEEEeC
Confidence 99999999999999875431 12344554 3444 489999999885
No 113
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.69 E-value=2.4e-16 Score=144.08 Aligned_cols=114 Identities=30% Similarity=0.398 Sum_probs=97.0
Q ss_pred CCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eEeeeccccCCCCCccccEEEEE-ec--cC
Q 003975 25 GGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN---YKGITKHLEKNQNPVWNQIFAFS-KE--RL 98 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~kT~~i~~t~nP~Wne~f~f~-~~--~~ 98 (782)
|...+++.|+. ..+.|.|+|++|+||+..+..|.+||||++.+.+ ++++|+++++ .||+|||+|.|+ +. ++
T Consensus 3 G~l~~sl~Y~~--~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l 79 (124)
T cd08389 3 GDLDVAFEYDP--SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEEL 79 (124)
T ss_pred EEEEEEEEECC--CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHh
Confidence 45567777776 4568999999999999999889999999988743 5789999887 999999999998 54 44
Q ss_pred CCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEec
Q 003975 99 QSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 99 ~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
....|.|+|||++.. ++++||++.++|+++.... ....|++|+
T Consensus 80 ~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~-----~~~~w~~L~ 123 (124)
T cd08389 80 NNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEG-----ETTVWLTLE 123 (124)
T ss_pred ccCEEEEEEEECCCcccCceEEEEEEeccccCCCC-----CceEEEeCC
Confidence 578899999999988 8999999999999996643 377899997
No 114
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.69 E-value=3.8e-16 Score=143.14 Aligned_cols=113 Identities=27% Similarity=0.411 Sum_probs=95.4
Q ss_pred CCceeeeeccccceeEEEEEEEEeeCCCCCC-CCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEecc--
Q 003975 26 GDKTASTYDLVELMHYLCVNVVKARNLPVMD-VSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKER-- 97 (782)
Q Consensus 26 ~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~-- 97 (782)
...+++.|+- ..+.|.|+|++|+||+..+ ..|.+||||++.+.+ .+++|++++++.||+|||+|.|.+..
T Consensus 2 ~i~~~l~y~~--~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~ 79 (123)
T cd08521 2 EIEFSLSYNY--KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQ 79 (123)
T ss_pred eEEEEEEEeC--CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHH
Confidence 3456667754 5679999999999999988 788999999999842 46899999999999999999999864
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEe
Q 003975 98 LQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRL 145 (782)
Q Consensus 98 ~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L 145 (782)
+....|.|+|||++.. ++++||++.++|+++..+. ....||+|
T Consensus 80 l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~-----~~~~w~~l 123 (123)
T cd08521 80 LETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDS-----QQSEWYPL 123 (123)
T ss_pred hCCCEEEEEEEeCCCCcCCceeeEEEEecccccccC-----CCccEEEC
Confidence 3457899999999988 8999999999999996542 26789987
No 115
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.68 E-value=3.2e-16 Score=143.23 Aligned_cols=114 Identities=16% Similarity=0.199 Sum_probs=96.5
Q ss_pred cceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEEC---CEEE
Q 003975 328 SSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYG---NKWI 403 (782)
Q Consensus 328 ~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~---~~~~ 403 (782)
.|+|.+++.+.. ..+.|.|+|++|+||++.+. .+. ||||++.+. .++.
T Consensus 2 ~G~l~~sl~Y~~-------------------------~~~~L~V~Vi~a~nL~~~~~---~~~~d~yVk~~llp~~~~~~ 53 (124)
T cd08389 2 CGDLDVAFEYDP-------------------------SARKLTVTVIRAQDIPTKDR---GGASSWQVHLVLLPSKKQRA 53 (124)
T ss_pred CEEEEEEEEECC-------------------------CCCEEEEEEEEecCCCchhc---CCCCCcEEEEEEccCCccee
Confidence 388999888733 34699999999999998863 355 999998772 3578
Q ss_pred eecccCCCCCCeeccEEEEE-eeC---CCceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeee
Q 003975 404 RTRTILDTLAPRWNEQYTWD-VYD---PCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLL 476 (782)
Q Consensus 404 rT~~~~~t~~P~wne~~~f~-v~~---~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 476 (782)
||+++++ .||+|||.|.|+ +.. ....|.++|||++.++ ++++||.+.|+|+++..+.....||+|+
T Consensus 54 kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~------~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 54 KTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERMR------KERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred ecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCcc------cCceEEEEEEeccccCCCCCceEEEeCC
Confidence 9999888 999999999998 543 2568999999999876 8999999999999999888899999996
No 116
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.68 E-value=2.6e-16 Score=147.37 Aligned_cols=104 Identities=27% Similarity=0.341 Sum_probs=87.8
Q ss_pred EEEEEEEEeecCCCCccCC-----------CCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCC--CceEEE
Q 003975 368 TLELGILSAKNLMQMKSKD-----------GKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDP--CTVITI 433 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~-----------~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~--~~~l~i 433 (782)
.|.|+|++|+||+.+|... ..+. ||||+|.++++..||++++++.||+|||+|.|++..+ ...|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 3789999999999987431 1245 9999999999999999999999999999999998654 569999
Q ss_pred EEEeCCcCCCCCCCCCCCccEEEEEEcccccCCce-------EEEEEeeee
Q 003975 434 GVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRI-------YTHYYPLLL 477 (782)
Q Consensus 434 ~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~-------~~~w~~L~~ 477 (782)
+|||++..+ +|++||++.|+|+++..... -.+|+.|..
T Consensus 81 ~v~D~d~~~------~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg 125 (151)
T cd04018 81 QIRDWDRVG------NDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYG 125 (151)
T ss_pred EEEECCCCC------CCCEEEEEEEeHHHhccCCccccCCccCceEEEeec
Confidence 999999876 89999999999999876542 247777764
No 117
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.68 E-value=6.4e-16 Score=142.37 Aligned_cols=113 Identities=24% Similarity=0.359 Sum_probs=97.7
Q ss_pred EEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCC---CceEEEEEEeCCcCCCCCCCC
Q 003975 373 ILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDP---CTVITIGVFDNCYVNGSKDDA 448 (782)
Q Consensus 373 v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~---~~~l~i~v~d~~~~~~~~~~~ 448 (782)
|++|+||+. . .|+ ||||+|.+++..++|++++++.||+|||.|.|++..+ ...|.|+|||++.++
T Consensus 2 vi~a~~L~~--~---~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~------ 70 (127)
T cd08373 2 VVSLKNLPG--L---KGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVG------ 70 (127)
T ss_pred eEEeeCCcc--c---CCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCC------
Confidence 689999997 2 255 9999999999999999999999999999999999753 579999999999875
Q ss_pred CCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEEEEc
Q 003975 449 KDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRFTCT 498 (782)
Q Consensus 449 ~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~~~~ 498 (782)
+|++||++.++|+++..+.....|++|.... +....|+|++++.|.+.
T Consensus 71 ~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~~~l~l~~~~~~~ 118 (127)
T cd08373 71 RNRLIGSATVSLQDLVSEGLLEVTEPLLDSN--GRPTGATISLEVSYQPP 118 (127)
T ss_pred CCceEEEEEEEhhHcccCCceEEEEeCcCCC--CCcccEEEEEEEEEeCC
Confidence 8999999999999999988899999997533 33335999999998664
No 118
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.68 E-value=8.3e-16 Score=141.51 Aligned_cols=118 Identities=28% Similarity=0.438 Sum_probs=99.5
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CC
Q 003975 40 HYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN---YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KD 115 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d 115 (782)
+.|.|+|++|++|+..+..|.+||||++.+++ ..++|++++++.||.|||+|.|.+.......|.|+|||++.. ++
T Consensus 1 ~~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~ 80 (126)
T cd04043 1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKH 80 (126)
T ss_pred CEEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCC
Confidence 36899999999999999899999999999864 367999999999999999999999775567899999999988 99
Q ss_pred ceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEecc
Q 003975 116 DFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGT 166 (782)
Q Consensus 116 ~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~ 166 (782)
++||++.++|.++.... +......|++|.. .|+|.+.+.+..
T Consensus 81 ~~iG~~~i~l~~~~~~~--~~~~~~~w~~l~~-------~g~i~l~~~~~~ 122 (126)
T cd04043 81 DLCGRASLKLDPKRFGD--DGLPREIWLDLDT-------QGRLLLRVSMEG 122 (126)
T ss_pred ceEEEEEEecCHHHcCC--CCCCceEEEEcCC-------CCeEEEEEEEee
Confidence 99999999999875432 1223678999974 478888877654
No 119
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.68 E-value=3.6e-16 Score=142.94 Aligned_cols=117 Identities=26% Similarity=0.347 Sum_probs=94.5
Q ss_pred EEEEEEEeecCCCCccCCCCCC-CcEEEEEEC-CEEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCCCCC
Q 003975 369 LELGILSAKNLMQMKSKDGKLT-DAYCVAKYG-NKWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGSKD 446 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~-~~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~~~ 446 (782)
|+|+|++|+||+.++.. +. ||||+++++ .+.+||++++++.||.|||.|.|.+.. ...|.|+|||++.++
T Consensus 2 l~v~v~~A~~L~~~~~~---~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~---- 73 (123)
T cd08382 2 VRLTVLCADGLAKRDLF---RLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFK---- 73 (123)
T ss_pred eEEEEEEecCCCccCCC---CCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCC----
Confidence 78999999999987643 56 999999996 678999999999999999999999975 689999999998764
Q ss_pred CCCCCccEEEEEEcccccCCc-eEEEEEeeeecCCC-CCCcCcEEEEEE
Q 003975 447 DAKDQRIGKVRIRLSTLETDR-IYTHYYPLLLLTPS-GLKNNGELHLAL 493 (782)
Q Consensus 447 ~~~d~~lG~~~i~l~~l~~~~-~~~~w~~L~~~~~~-g~~~~G~i~l~~ 493 (782)
...|++||++.++++++.... ....||+|...... +....|+|.+++
T Consensus 74 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 74 KKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred CCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 112689999999999986543 33679999765542 222358887764
No 120
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.67 E-value=3.7e-16 Score=149.26 Aligned_cols=127 Identities=20% Similarity=0.274 Sum_probs=100.6
Q ss_pred cceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEEC-----CE
Q 003975 328 SSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYG-----NK 401 (782)
Q Consensus 328 ~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~-----~~ 401 (782)
+|+|.+++++..... +..+ .......|.|.|+|++|+||+..+. .+. ||||+|.+. ..
T Consensus 1 ~G~l~~~l~y~~~~~----------~~~~---~~~~~~~g~L~V~Vi~A~nL~~~d~---~g~~DPYVkv~l~~~~~~~~ 64 (162)
T cd04020 1 RGELKVALKYVPPES----------EGAL---KSKKPSTGELHVWVKEAKNLPALKS---GGTSDSFVKCYLLPDKSKKS 64 (162)
T ss_pred CceEEEEEEecCccc----------cccc---cccCCCCceEEEEEEeeeCCCCCCC---CCCCCCEEEEEEEcCCCCCc
Confidence 388999998754210 0000 1113467999999999999998864 356 999999882 35
Q ss_pred EEeecccCCCCCCeeccEEEEEeeCC----CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeee
Q 003975 402 WIRTRTILDTLAPRWNEQYTWDVYDP----CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLL 476 (782)
Q Consensus 402 ~~rT~~~~~t~~P~wne~~~f~v~~~----~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 476 (782)
.+||++++++.||.|||.|.|.+..+ ...|.|+|||++.++ +|++||++.++++++........|+++.
T Consensus 65 ~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~------~d~~lG~v~i~l~~~~~~~~~~~w~~~~ 137 (162)
T cd04020 65 KQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLS------SNDFLGGVRLGLGTGKSYGQAVDWMDST 137 (162)
T ss_pred ceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCC------CCceEEEEEEeCCccccCCCccccccCC
Confidence 79999999999999999999986432 358999999999876 7999999999999998777779999886
No 121
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.67 E-value=6.3e-16 Score=144.83 Aligned_cols=108 Identities=26% Similarity=0.427 Sum_probs=91.4
Q ss_pred EEEEEEEeeCCCCCCCC--------------CCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEecc-CCCCeEEEE
Q 003975 42 LCVNVVKARNLPVMDVS--------------GSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKER-LQSSLLEVT 106 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~--------------g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~-~~~~~L~i~ 106 (782)
|.|+|++|++|+.+|.. +.+||||+|.+++++.+|++++++.||+|||+|.|.+.. .....|.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 78999999999998854 378999999999999999999999999999999999743 235789999
Q ss_pred EEeCCCC-CCceeEEEEEEccccCCCCCCC--CCCCCEEEEeccCC
Q 003975 107 VKDKDIG-KDDFVGRVSLDLSQVPLRVPPD--SPLAPQWYRLEDKK 149 (782)
Q Consensus 107 V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~--~~~~~~w~~L~~~~ 149 (782)
|||+|.. +|++||++.+++.++....... -...++|+.|.+..
T Consensus 82 v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~ 127 (151)
T cd04018 82 IRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSP 127 (151)
T ss_pred EEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCc
Confidence 9999998 9999999999999987643210 11357999998865
No 122
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.67 E-value=7e-16 Score=141.38 Aligned_cols=114 Identities=32% Similarity=0.373 Sum_probs=96.3
Q ss_pred CceeeeeccccceeEEEEEEEEeeCCCCCC-CCCCCCcEEEEEEC---CeEeeeccccCCCCCccccEEEEEecc--CCC
Q 003975 27 DKTASTYDLVELMHYLCVNVVKARNLPVMD-VSGSLDPYVEVKLG---NYKGITKHLEKNQNPVWNQIFAFSKER--LQS 100 (782)
Q Consensus 27 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~---~~~~kT~~i~~t~nP~Wne~f~f~~~~--~~~ 100 (782)
..+++.|+- ..+.|.|+|++|++|+..+ ..+.+||||++++. .+.++|++++++.||+|||+|.|.+.. ...
T Consensus 3 l~~~l~y~~--~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~ 80 (123)
T cd08390 3 LWFSVQYDL--EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQR 80 (123)
T ss_pred EEEEEEECC--CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcc
Confidence 356666665 5578999999999999998 68899999999984 356799999999999999999999863 335
Q ss_pred CeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEecc
Q 003975 101 SLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLED 147 (782)
Q Consensus 101 ~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~ 147 (782)
..|.|+|||++.. ++++||++.++|.++..... ...|++|+.
T Consensus 81 ~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~-----~~~w~~L~~ 123 (123)
T cd08390 81 RTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKG-----GVVWRDLEP 123 (123)
T ss_pred cEEEEEEEECCcCCCCcEEEEEEEeccceecCCC-----ceEEEeCCC
Confidence 6899999999988 89999999999999987543 568999863
No 123
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.67 E-value=1.2e-15 Score=141.98 Aligned_cols=120 Identities=28% Similarity=0.510 Sum_probs=98.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeeecccCCCCCCcccceeEEEecCC---------CCCeEEEEEEEc
Q 003975 203 YLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNEEHMFVASEP---------FEDLIIVTVEDR 273 (782)
Q Consensus 203 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~~~~t~nP~wne~f~f~v~~~---------~~~~l~i~V~d~ 273 (782)
+|+|+|++|++|+..+..+.+||||+|.++++.++|+++++ +.||.|||.|.|.+... ....|.|+|||+
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~-t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKE-TLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcC-CCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 69999999999999999999999999999999999999986 99999999999975332 124799999999
Q ss_pred cCCCCCceeEEEEE-eCCCcccccCCCCCCCCceEEccCCCcccccccccccccccceEEEEEEe
Q 003975 274 IRPGKDEILGRELI-PVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCL 337 (782)
Q Consensus 274 ~~~~~d~~iG~~~i-~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~ 337 (782)
+..++|++||++.+ ++..+... .......+|++|.... ...|+|++.+.+
T Consensus 81 d~~~~d~~iG~~~i~~~~~~~~~--~~~~~~~~W~~L~~~~------------~~~Geil~~~~~ 131 (135)
T cd04017 81 DSVGKDEFLGRSVAKPLVKLDLE--EDFPPKLQWFPIYKGG------------QSAGELLAAFEL 131 (135)
T ss_pred cCCCCCccceEEEeeeeeecccC--CCCCCCceEEEeecCC------------CchhheeEEeEE
Confidence 99999999999997 44444322 3456688999997442 356999888865
No 124
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.67 E-value=7.9e-16 Score=141.03 Aligned_cols=105 Identities=16% Similarity=0.199 Sum_probs=90.0
Q ss_pred CceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEEC---CEEEeecccCCCCCCeeccEEEEEeeCC---CceEEEEEE
Q 003975 364 GSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYG---NKWIRTRTILDTLAPRWNEQYTWDVYDP---CTVITIGVF 436 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~---~~~~rT~~~~~t~~P~wne~~~f~v~~~---~~~l~i~v~ 436 (782)
+..+.|.|.|++|+||+.++. ..+. ||||++++. .+..+|++++++.||+|||.|.|.+... ...|.|.||
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~--~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~ 88 (123)
T cd08390 11 LEEEQLTVSLIKARNLPPRTK--DVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVY 88 (123)
T ss_pred CCCCEEEEEEEEecCCCCccC--CCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEE
Confidence 345799999999999998762 2355 999999983 3568999999999999999999998753 458999999
Q ss_pred eCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeee
Q 003975 437 DNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLL 476 (782)
Q Consensus 437 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~ 476 (782)
|.+..+ .+++||++.++|+++........|++|.
T Consensus 89 d~~~~~------~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 89 DVDRFS------RHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred ECCcCC------CCcEEEEEEEeccceecCCCceEEEeCC
Confidence 998765 7899999999999999888889999985
No 125
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.66 E-value=6e-16 Score=145.14 Aligned_cols=101 Identities=32% Similarity=0.550 Sum_probs=89.8
Q ss_pred ccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----------------------------eEeeeccccCCCCCc
Q 003975 36 VELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----------------------------YKGITKHLEKNQNPV 86 (782)
Q Consensus 36 ~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----------------------------~~~kT~~i~~t~nP~ 86 (782)
.++.+.|.|+|++|++|+..|..|.+||||+|.+++ ..++|+++++|.||+
T Consensus 24 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~ 103 (153)
T cd08676 24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPV 103 (153)
T ss_pred CCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCc
Confidence 567899999999999999999999999999999963 236899999999999
Q ss_pred cccEEEEEeccCCCCeEEEEEEeCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEe
Q 003975 87 WNQIFAFSKERLQSSLLEVTVKDKDIGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRL 145 (782)
Q Consensus 87 Wne~f~f~~~~~~~~~L~i~V~d~d~~~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L 145 (782)
|||+|.|.+..+....|.|+|||++ +++||++.+++.++... ..+.||+|
T Consensus 104 WnE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~~------~~d~W~~L 153 (153)
T cd08676 104 WNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPSC------GLDSWFKL 153 (153)
T ss_pred cccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhCCC------CCCCeEeC
Confidence 9999999998766789999999997 89999999999999832 25789987
No 126
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.66 E-value=7.2e-16 Score=142.27 Aligned_cols=90 Identities=26% Similarity=0.356 Sum_probs=76.9
Q ss_pred eEEEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----eEeeeecccCCCCCCcccceeEEEecCC--CCCeEEEEEE
Q 003975 201 LYYLRVFVFEAQDLVPSDK--GRAPDACVRIQLGN-----QLRVTRPSHVRSVNPVWNEEHMFVASEP--FEDLIIVTVE 271 (782)
Q Consensus 201 ~~~L~V~V~~a~~L~~~~~--~~~~dpyv~v~l~~-----~~~~T~~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~ 271 (782)
.+.|.|+|++|+||...+. .+.+||||+|++.. .+.+|+++++ +.||+|||.|.|.+... .+..|.|+||
T Consensus 14 ~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~-t~nPvfNE~f~F~v~~~~L~~~~L~~~V~ 92 (138)
T cd08407 14 ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKH-KINPVWNEMIMFELPSELLAASSVELEVL 92 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeC-CCCCccccEEEEECCHHHhCccEEEEEEE
Confidence 3469999999999999983 34589999999965 2467888876 99999999999998643 3568999999
Q ss_pred EccCCCCCceeEEEEEeCCC
Q 003975 272 DRIRPGKDEILGRELIPVRN 291 (782)
Q Consensus 272 d~~~~~~d~~iG~~~i~l~~ 291 (782)
|++..+++++||++.+++..
T Consensus 93 d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 93 NQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred eCCCCcCcceeceEEecCcC
Confidence 99999999999999999865
No 127
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.66 E-value=9.8e-16 Score=141.57 Aligned_cols=103 Identities=20% Similarity=0.225 Sum_probs=84.8
Q ss_pred CceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEEC--C-E--EEeecccCCCCCCeeccEEEEEeeC---CCceEEEE
Q 003975 364 GSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYG--N-K--WIRTRTILDTLAPRWNEQYTWDVYD---PCTVITIG 434 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~--~-~--~~rT~~~~~t~~P~wne~~~f~v~~---~~~~l~i~ 434 (782)
+..+.|.|+|++|+||+..+. .|. ||||+|++. + + +.||+++++++||+|||.|.|.|.. ....|.|+
T Consensus 12 ~~~~~L~V~Vi~A~nL~~~~~---~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~ 88 (136)
T cd08406 12 PTAERLTVVVVKARNLVWDNG---KTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVT 88 (136)
T ss_pred CCCCEEEEEEEEeeCCCCccC---CCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEE
Confidence 344699999999999998753 366 999999983 2 2 5789999999999999999999875 35689999
Q ss_pred EEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeee
Q 003975 435 VFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLL 477 (782)
Q Consensus 435 v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 477 (782)
|||++.++ ++++||++.|+... .+....+|..+..
T Consensus 89 V~~~d~~~------~~~~iG~v~lg~~~--~g~~~~hW~~ml~ 123 (136)
T cd08406 89 VAESTEDG------KTPNVGHVIIGPAA--SGMGLSHWNQMLA 123 (136)
T ss_pred EEeCCCCC------CCCeeEEEEECCCC--CChhHHHHHHHHH
Confidence 99999876 89999999998765 4555677877764
No 128
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.66 E-value=6.1e-16 Score=142.18 Aligned_cols=112 Identities=26% Similarity=0.268 Sum_probs=94.4
Q ss_pred EEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC-EEEeecccC-CCCCCeeccEEEEEeeCC-----CceEEEEEEeCC
Q 003975 368 TLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN-KWIRTRTIL-DTLAPRWNEQYTWDVYDP-----CTVITIGVFDNC 439 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-~~~rT~~~~-~t~~P~wne~~~f~v~~~-----~~~l~i~v~d~~ 439 (782)
.|+|+|++|+||+..+. .++ ||||+|++++ +..+|+++. ++.||.|||.|.|.+..+ ...|.|+|||++
T Consensus 1 ~L~V~V~sA~~L~~~~~---~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~ 77 (125)
T cd04051 1 TLEITIISAEDLKNVNL---FGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCER 77 (125)
T ss_pred CEEEEEEEcccCCCCCc---ccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECC
Confidence 37899999999998754 356 9999999988 889999985 589999999999999876 579999999998
Q ss_pred cCCCCCCCCCCCccEEEEEEcccccCCce-----EEEEEeeeecCCCCCCcCcEEEE
Q 003975 440 YVNGSKDDAKDQRIGKVRIRLSTLETDRI-----YTHYYPLLLLTPSGLKNNGELHL 491 (782)
Q Consensus 440 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~-----~~~w~~L~~~~~~g~~~~G~i~l 491 (782)
.++ +|++||.+.|+|.++..+.. ...||+|.... .+.+|.|++
T Consensus 78 ~~~------~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~---g~~~G~~~~ 125 (125)
T cd04051 78 PSL------GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS---GKPQGVLNF 125 (125)
T ss_pred CCC------CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC---CCcCeEEeC
Confidence 765 89999999999999976554 47899998533 344688874
No 129
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.65 E-value=2.6e-16 Score=145.41 Aligned_cols=117 Identities=29% Similarity=0.291 Sum_probs=94.2
Q ss_pred CCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEec--c
Q 003975 25 GGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKE--R 97 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~--~ 97 (782)
|...+++.|+- ..+.|.|+|++|+||+..|..|.+||||+|++.+ .+.||+++++|.||+|||+|.|.+. +
T Consensus 2 G~i~~sL~Y~~--~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~ 79 (136)
T cd08406 2 GEILLSLSYLP--TAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIV 79 (136)
T ss_pred cEEEEEEEEcC--CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHH
Confidence 44566666655 4568999999999999999899999999999943 2568999999999999999999985 4
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCC
Q 003975 98 LQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKG 150 (782)
Q Consensus 98 ~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g 150 (782)
+....|.|+|||+|.. ++++||++.+..... + ....+|..+....+
T Consensus 80 l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~~--g-----~~~~hW~~ml~~~~ 126 (136)
T cd08406 80 LQDLSLRVTVAESTEDGKTPNVGHVIIGPAAS--G-----MGLSHWNQMLASLR 126 (136)
T ss_pred hCCcEEEEEEEeCCCCCCCCeeEEEEECCCCC--C-----hhHHHHHHHHHCCC
Confidence 5678899999999988 999999999966532 2 12456777666543
No 130
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.65 E-value=2.4e-15 Score=138.81 Aligned_cols=117 Identities=25% Similarity=0.381 Sum_probs=97.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-------------eEeeeccccCCCCCcc-ccEEEEEeccCCCCeEEEE
Q 003975 41 YLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-------------YKGITKHLEKNQNPVW-NQIFAFSKERLQSSLLEVT 106 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-------------~~~kT~~i~~t~nP~W-ne~f~f~~~~~~~~~L~i~ 106 (782)
+..|++++|++|+ ++..|++||||++.+.+ ++++|+++++|+||+| ||+|.|.+.. .+.|.|+
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~--~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP--TDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC--CCEEEEE
Confidence 4689999999998 67789999999999952 3689999999999999 9999999854 5689999
Q ss_pred EEeCCCC----CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEE
Q 003975 107 VKDKDIG----KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAV 162 (782)
Q Consensus 107 V~d~d~~----~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~ 162 (782)
|||++.. .+++||++.+++.++..... .....+||+|+.......+.|+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~--~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHA--IGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhccccc--CCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 9998754 27999999999999986532 234678999997765556889998875
No 131
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.65 E-value=8.6e-16 Score=139.61 Aligned_cols=94 Identities=31% Similarity=0.364 Sum_probs=83.6
Q ss_pred ccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEecc-CCCCeEEEEEEeCCCC-
Q 003975 36 VELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKER-LQSSLLEVTVKDKDIG- 113 (782)
Q Consensus 36 ~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~-~~~~~L~i~V~d~d~~- 113 (782)
.+.++.|.|+|++|++|+. +..|.+||||+|++++++++|++++++.||+|||+|.|.... .....|.|+|||++..
T Consensus 24 ~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s 102 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGW 102 (127)
T ss_pred cCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCC
Confidence 3467899999999999984 667899999999999999999999999999999999997532 3568899999999998
Q ss_pred CCceeEEEEEEccccCC
Q 003975 114 KDDFVGRVSLDLSQVPL 130 (782)
Q Consensus 114 ~d~~lG~~~v~l~~l~~ 130 (782)
+|++||++.++|.....
T Consensus 103 ~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 103 DDDLLGTCSVVPEAGVH 119 (127)
T ss_pred CCCeeEEEEEEecCCce
Confidence 99999999999997764
No 132
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.65 E-value=1.9e-15 Score=137.20 Aligned_cols=106 Identities=15% Similarity=0.207 Sum_probs=84.0
Q ss_pred cCceeEEEEEEEEeecCCCCccCCCCCCCcEEEEEE--CC---EEEeecccCCCC-CCeeccEEEEEeeCC--CceEEEE
Q 003975 363 KGSIGTLELGILSAKNLMQMKSKDGKLTDAYCVAKY--GN---KWIRTRTILDTL-APRWNEQYTWDVYDP--CTVITIG 434 (782)
Q Consensus 363 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~--~~---~~~rT~~~~~t~-~P~wne~~~f~v~~~--~~~l~i~ 434 (782)
.|..|+|+|.|++|+||++++ +..+.||||+|++ ++ .+.||+++++|+ ||+|||.|.|+|... ...|.|+
T Consensus 10 ~p~~~rLtV~VikarnL~~~~--~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~ 87 (135)
T cd08692 10 QAVNSRIQLQILEAQNLPSSS--TPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIK 87 (135)
T ss_pred cCcCCeEEEEEEEccCCCccc--CCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEE
Confidence 566789999999999999874 2233399999987 22 468999999995 699999999999753 4489999
Q ss_pred EEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeee
Q 003975 435 VFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLL 477 (782)
Q Consensus 435 v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 477 (782)
|||++..+ ++++||++.++.+... +....+|.++..
T Consensus 88 v~d~~~~~------~n~~IG~v~lG~~~~~-~~~~~hW~~m~~ 123 (135)
T cd08692 88 LYSRSSVR------RKHFLGQVWISSDSSS-SEAVEQWKDTIA 123 (135)
T ss_pred EEeCCCCc------CCceEEEEEECCccCC-chhhhhHHHHHh
Confidence 99998765 8999999999998742 233467777654
No 133
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=99.65 E-value=5.4e-16 Score=170.50 Aligned_cols=177 Identities=20% Similarity=0.334 Sum_probs=144.2
Q ss_pred chhhHHHHHHHHH---HHHHHhhccccccCchhhHHHHHHHHHHHHccch--hHHHHHHHHHHHHHhhccc-CCCCCCCC
Q 003975 569 CKANFQRIVELLS---AICRWFNDICTWRNPVETALLHVLFLTLVFYPEL--ILPTIFLYLFLIGMWNYRL-RPRHPPHV 642 (782)
Q Consensus 569 ~~~n~~rl~~~~~---~~~~~~~~~~~W~~p~~t~~~~~~~~~~~~~~~l--~~p~~~l~l~~~~~~~~~~-~~~~~~~~ 642 (782)
.-+|+..+++++. .++.+++.+.+|++|.+|+.+++++.+++|..|+ ++|++++++++.|+|.... +.+.+
T Consensus 485 I~tNvav~kELL~Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~~~~~g~~--- 561 (683)
T PF04842_consen 485 IDTNVAVMKELLFPLIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRYQGRLGKS--- 561 (683)
T ss_pred CccHHHHHHhccccHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCc---
Confidence 5589999999998 9999999999999999999999999999999887 8999999999999997665 43332
Q ss_pred CcccchhhhcchhhhhcccCCCcccccccCC-CCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHhcccccChh
Q 003975 643 DAKLSQAINAHLDELVKEFDTSDELDEEFDS-FPTSRPSDTVRMRYERLRSVGGQLQTMVGDLASQVERAQAILCWRDLR 721 (782)
Q Consensus 643 ~~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~-~~~~~~~~~l~~~~~~~~~~~~~vq~~l~~~a~~~e~~~n~~~w~~p~ 721 (782)
-++... .|+.+++ .+++-++|+.+.++++.|++++.++.|+|.++.|..|+
T Consensus 562 -------------------------~~~v~V~~pP~~nT---vEqilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~Pq 613 (683)
T PF04842_consen 562 -------------------------FGEVTVRDPPPKNT---VEQILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQ 613 (683)
T ss_pred -------------------------cceEEecCCCCccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 111221 2444554 89999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhchhhhhhheeeee-cccCCCCCCCCCC----chhhhhccCCC
Q 003975 722 ATFIFLIFSFIWAVFSYVTPFEVVAVLIGLY-MLRHPRFRSKMPS----VPVNFFKSFPS 776 (782)
Q Consensus 722 ~s~~~~~~l~~~~~~~~~vP~r~i~l~~g~~-~~r~P~~~~~~~~----~~~~~~~r~ps 776 (782)
+|..++++++++|+++.++|+||++++..+. +-|+=.||+.+.. .+-.++-++|.
T Consensus 614 aT~~Va~~Ll~~A~~LavvP~kyil~~v~l~~FTre~~~Rr~s~er~~RRlrEWW~sIPA 673 (683)
T PF04842_consen 614 ATNKVALALLGLAAVLAVVPFKYILLFVFLEVFTRESPFRRESSERFNRRLREWWDSIPA 673 (683)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhhCCc
Confidence 9999999999999999999999999998887 2222225443222 34445556663
No 134
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.65 E-value=3.3e-15 Score=139.78 Aligned_cols=115 Identities=23% Similarity=0.320 Sum_probs=91.5
Q ss_pred EEEEEEEeec--CCCCccCCCCCC-CcEEEEEE-----CCEEEeecccCCCCCCeeccEEEEEeeCC---------CceE
Q 003975 369 LELGILSAKN--LMQMKSKDGKLT-DAYCVAKY-----GNKWIRTRTILDTLAPRWNEQYTWDVYDP---------CTVI 431 (782)
Q Consensus 369 l~v~v~~a~~--L~~~~~~~~~~~-dpyv~v~~-----~~~~~rT~~~~~t~~P~wne~~~f~v~~~---------~~~l 431 (782)
..++|..|+| |+..+. .+. ||||++++ +.++.||+++++|+||+|||.|.|.|... ...|
T Consensus 4 ~el~i~~~~~~~l~~~~~---~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L 80 (155)
T cd08690 4 IELTIVRCIGIPLPSGWN---PKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGL 80 (155)
T ss_pred eEEEEEEeeccccCCCcC---CCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcE
Confidence 3455556665 666543 355 99999986 34689999999999999999999999654 3479
Q ss_pred EEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCC-CcCcEEEEEEEE
Q 003975 432 TIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGL-KNNGELHLALRF 495 (782)
Q Consensus 432 ~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~-~~~G~i~l~~~~ 495 (782)
.|+|||++.+. .+|++||++.|+|+.+..+.....|++|.. |. ...|+|+++++.
T Consensus 81 ~~~V~d~~~f~-----~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~----~~k~~Gg~l~v~ir~ 136 (155)
T cd08690 81 KFEVYHKGGFL-----RSDKLLGTAQVKLEPLETKCEIHESVDLMD----GRKATGGKLEVKVRL 136 (155)
T ss_pred EEEEEeCCCcc-----cCCCeeEEEEEEcccccccCcceEEEEhhh----CCCCcCCEEEEEEEe
Confidence 99999998753 279999999999999988877788999974 22 236899999986
No 135
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.65 E-value=1e-15 Score=140.35 Aligned_cols=102 Identities=25% Similarity=0.357 Sum_probs=91.8
Q ss_pred eEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCC-CCCCeeccEEEEEeeCC----CceEEEEEEeCCc
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILD-TLAPRWNEQYTWDVYDP----CTVITIGVFDNCY 440 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~-t~~P~wne~~~f~v~~~----~~~l~i~v~d~~~ 440 (782)
|.|+|.|++|+||+..+.. +. ||||+|+++++..+|++..+ +.||.|||.|.|.+..+ ...|.|+|||.+.
T Consensus 1 g~L~V~V~~A~~L~~~~~~---~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFL---GKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCCCCC---CCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 6899999999999987643 56 99999999999999999875 89999999999999876 5689999999998
Q ss_pred CCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeee
Q 003975 441 VNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLL 477 (782)
Q Consensus 441 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 477 (782)
++ +|++||++.++|+++..+.....|++|..
T Consensus 78 ~~------~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 78 FS------DDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred CC------CCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 75 79999999999999988888899999975
No 136
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.65 E-value=1.8e-15 Score=136.91 Aligned_cols=112 Identities=35% Similarity=0.527 Sum_probs=97.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCceeE
Q 003975 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGN-YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDDFVG 119 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~~lG 119 (782)
|.|+|++|++|+..+..|.+||||+|.+++ ..++|+++.++.||+|||+|.|.+.......|.|+|||++.. ++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 579999999999998889999999999976 458999999999999999999998765678899999999988 899999
Q ss_pred EEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEE
Q 003975 120 RVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIML 160 (782)
Q Consensus 120 ~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l 160 (782)
++.+++.++..+. ....|++|...++.. .|.|.+
T Consensus 81 ~~~~~l~~l~~~~-----~~~~~~~L~~~g~~~--~~~~~~ 114 (115)
T cd04040 81 SAYIDLSDLEPEE-----TTELTLPLDGQGGGK--LGAVFL 114 (115)
T ss_pred EEEEEHHHcCCCC-----cEEEEEECcCCCCcc--CceEEc
Confidence 9999999998653 267899998766553 677654
No 137
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.64 E-value=5.6e-16 Score=144.02 Aligned_cols=114 Identities=29% Similarity=0.457 Sum_probs=94.0
Q ss_pred eeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEecc--CCCC
Q 003975 29 TASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKER--LQSS 101 (782)
Q Consensus 29 ~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~--~~~~ 101 (782)
+++.| ....+.|.|+|++|++|+..|..|.+||||+|.+.+ .+++|++++++.||+|||+|.|.+.. ....
T Consensus 4 ~~l~y--~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~ 81 (133)
T cd08384 4 VSLMY--NTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKK 81 (133)
T ss_pred EEEEE--cCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCC
Confidence 44444 446789999999999999999889999999999953 36799999999999999999999863 3457
Q ss_pred eEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCC
Q 003975 102 LLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGD 151 (782)
Q Consensus 102 ~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~ 151 (782)
.|.|+|||++.. ++++||++.+++.... ....+|+++....+.
T Consensus 82 ~l~~~V~d~d~~~~~~~lG~~~i~l~~~~-------~~~~~W~~~l~~~~~ 125 (133)
T cd08384 82 TLEITVWDKDIGKSNDYIGGLQLGINAKG-------ERLRHWLDCLKNPDK 125 (133)
T ss_pred EEEEEEEeCCCCCCccEEEEEEEecCCCC-------chHHHHHHHHhCCCC
Confidence 899999999988 8999999999997521 125689888765543
No 138
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.64 E-value=3.6e-15 Score=137.27 Aligned_cols=118 Identities=23% Similarity=0.352 Sum_probs=100.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEeeeecccCCCCCCcccceeEEEecCCCCCeEEEEEEEccCCCCC
Q 003975 203 YLRVFVFEAQDLVPSDKGRAPDACVRIQLGN---QLRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIRPGKD 279 (782)
Q Consensus 203 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~---~~~~T~~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d 279 (782)
.++|+|++|++|+..+.++.+||||++.+++ +.++|+++++ +.||.|||+|.|.+.......|.|+|||++..+++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~-t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~ 80 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYD-TLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKH 80 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecC-CCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCC
Confidence 5899999999999999899999999999864 3679999886 99999999999999876667899999999988899
Q ss_pred ceeEEEEEeCCCcccccCCCCCCCCceEEccCCCcccccccccccccccceEEEEEEecc
Q 003975 280 EILGRELIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCLEA 339 (782)
Q Consensus 280 ~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~~~ 339 (782)
++||++.++++.+... .+......|++|.+. |++++++++.+
T Consensus 81 ~~iG~~~i~l~~~~~~--~~~~~~~~w~~l~~~----------------g~i~l~~~~~~ 122 (126)
T cd04043 81 DLCGRASLKLDPKRFG--DDGLPREIWLDLDTQ----------------GRLLLRVSMEG 122 (126)
T ss_pred ceEEEEEEecCHHHcC--CCCCCceEEEEcCCC----------------CeEEEEEEEee
Confidence 9999999999876532 214456789999753 88999988755
No 139
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.64 E-value=1.4e-15 Score=141.95 Aligned_cols=91 Identities=41% Similarity=0.545 Sum_probs=85.2
Q ss_pred eeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCce
Q 003975 39 MHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDDF 117 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~~ 117 (782)
.|.|.|+|++|++|+..+. +.+||||++++++++++|++++++.||+|||+|.|.+.+. ...|.|+|||++.+ +|++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~dd~ 78 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSKDDS 78 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCCCCE
Confidence 3789999999999999887 8999999999999999999999999999999999999875 78899999999988 8999
Q ss_pred eEEEEEEccccCCC
Q 003975 118 VGRVSLDLSQVPLR 131 (782)
Q Consensus 118 lG~~~v~l~~l~~~ 131 (782)
||++.+++.++...
T Consensus 79 iG~a~i~l~~l~~~ 92 (145)
T cd04038 79 MGEAEIDLEPLVEA 92 (145)
T ss_pred EEEEEEEHHHhhhh
Confidence 99999999999865
No 140
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.64 E-value=5e-15 Score=138.53 Aligned_cols=118 Identities=20% Similarity=0.311 Sum_probs=95.6
Q ss_pred EEEEEEEeeC--CCCCCCCCCCCcEEEEEE--C---CeEeeeccccCCCCCccccEEEEEeccC--------CCCeEEEE
Q 003975 42 LCVNVVKARN--LPVMDVSGSLDPYVEVKL--G---NYKGITKHLEKNQNPVWNQIFAFSKERL--------QSSLLEVT 106 (782)
Q Consensus 42 L~V~v~~a~~--L~~~d~~g~~dPyv~v~~--~---~~~~kT~~i~~t~nP~Wne~f~f~~~~~--------~~~~L~i~ 106 (782)
..++|..|++ |+..+..+.+||||++.+ . .++.||+++++|+||+|||+|.|.+... ....|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 3556666666 778887889999999997 2 3689999999999999999999998642 25679999
Q ss_pred EEeCCCC--CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEecc
Q 003975 107 VKDKDIG--KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGT 166 (782)
Q Consensus 107 V~d~d~~--~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~ 166 (782)
|||++.+ +|++||++.++|+.+..... ...|++|.+.. +...|+|.+.+....
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~-----~~~~~~L~~~~--k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCE-----IHESVDLMDGR--KATGGKLEVKVRLRE 138 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCc-----ceEEEEhhhCC--CCcCCEEEEEEEecC
Confidence 9999986 79999999999999976532 55799998633 336899999987753
No 141
>PLN03008 Phospholipase D delta
Probab=99.64 E-value=1.4e-15 Score=171.99 Aligned_cols=126 Identities=23% Similarity=0.405 Sum_probs=107.5
Q ss_pred eEEEEEEEEeecCCCCccC------------------------------CC---------CCC-CcEEEEEECCE-EEee
Q 003975 367 GTLELGILSAKNLMQMKSK------------------------------DG---------KLT-DAYCVAKYGNK-WIRT 405 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~------------------------------~~---------~~~-dpyv~v~~~~~-~~rT 405 (782)
|.|.++|++|++|++||.. .+ .++ ||||+|.++++ ..||
T Consensus 14 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~RT 93 (868)
T PLN03008 14 GDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLART 93 (868)
T ss_pred cccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceeeE
Confidence 7899999999999875431 01 245 99999999875 5799
Q ss_pred cccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCc
Q 003975 406 RTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKN 485 (782)
Q Consensus 406 ~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~ 485 (782)
++++++.||+|||.|.|.+.++...|.|+|+|+|.++ +++||.+.|||.++..+...+.|++|.....+..+.
T Consensus 94 rVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-------aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~ 166 (868)
T PLN03008 94 RVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-------AQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKA 166 (868)
T ss_pred EeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-------CceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCC
Confidence 9999999999999999999998889999999999874 589999999999999999999999999755444445
Q ss_pred CcEEEEEEEEEEcc
Q 003975 486 NGELHLALRFTCTA 499 (782)
Q Consensus 486 ~G~i~l~~~~~~~~ 499 (782)
.|+|+++++|.+..
T Consensus 167 ~~kl~v~lqf~pv~ 180 (868)
T PLN03008 167 ETAIFIDMKFTPFD 180 (868)
T ss_pred CcEEEEEEEEEEcc
Confidence 68999999998743
No 142
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.63 E-value=2.6e-15 Score=137.72 Aligned_cols=104 Identities=28% Similarity=0.398 Sum_probs=92.3
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccC-CCCCccccEEEEEeccC---CCCeEEEEEEeCCCC-C
Q 003975 40 HYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEK-NQNPVWNQIFAFSKERL---QSSLLEVTVKDKDIG-K 114 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~-t~nP~Wne~f~f~~~~~---~~~~L~i~V~d~d~~-~ 114 (782)
|.|.|+|++|++|+..+..+.+||||+|+++++..+|+++.+ +.||+|||+|.|.+... ....|.|+|||++.. +
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 579999999999999888899999999999998889999885 89999999999999765 357899999999988 8
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCEEEEeccC
Q 003975 115 DDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDK 148 (782)
Q Consensus 115 d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (782)
+++||++.+++.++..+. ..+.|++|...
T Consensus 81 d~~iG~~~i~l~~l~~~~-----~~~~~~~l~p~ 109 (124)
T cd04049 81 DDFIGEATIHLKGLFEEG-----VEPGTAELVPA 109 (124)
T ss_pred CCeEEEEEEEhHHhhhCC-----CCcCceEeecc
Confidence 999999999999998753 25689998874
No 143
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.63 E-value=3.6e-15 Score=139.19 Aligned_cols=90 Identities=32% Similarity=0.555 Sum_probs=82.6
Q ss_pred eeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCCC
Q 003975 366 IGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGS 444 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~ 444 (782)
.|.|+|+|++|+||+..+. ++ ||||+++++++..||++++++.||+|||.|.|.+.++...|.|+|||++.++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~----~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~-- 74 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF----TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFS-- 74 (145)
T ss_pred CeEEEEEEEeeECCCCCCC----CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCC--
Confidence 4899999999999997652 45 9999999999999999999999999999999999998889999999999876
Q ss_pred CCCCCCCccEEEEEEcccccC
Q 003975 445 KDDAKDQRIGKVRIRLSTLET 465 (782)
Q Consensus 445 ~~~~~d~~lG~~~i~l~~l~~ 465 (782)
+|++||++.+++.++..
T Consensus 75 ----~dd~iG~a~i~l~~l~~ 91 (145)
T cd04038 75 ----KDDSMGEAEIDLEPLVE 91 (145)
T ss_pred ----CCCEEEEEEEEHHHhhh
Confidence 89999999999998743
No 144
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.63 E-value=8.7e-16 Score=143.17 Aligned_cols=118 Identities=33% Similarity=0.416 Sum_probs=97.3
Q ss_pred CCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEecc--
Q 003975 25 GGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKER-- 97 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~-- 97 (782)
|...++..|+. ..+.|.|+|++|++|+..|..|.+||||++++.+ .+.+|++++++.||+|||+|.|.+..
T Consensus 2 G~l~~~l~y~~--~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~ 79 (136)
T cd08404 2 GELLLSLCYQP--TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEE 79 (136)
T ss_pred CeEEEEEEEeC--CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHH
Confidence 44566667654 5678999999999999999999999999999843 25789999999999999999999853
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCC
Q 003975 98 LQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGD 151 (782)
Q Consensus 98 ~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~ 151 (782)
.....|.|+|||++.. ++++||++.+++... .. ...+|++|.+..|+
T Consensus 80 ~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~~--~~-----~~~~w~~l~~~~~~ 127 (136)
T cd08404 80 LEDISVEFLVLDSDRVTKNEVIGRLVLGPKAS--GS-----GGHHWKEVCNPPRR 127 (136)
T ss_pred hCCCEEEEEEEECCCCCCCccEEEEEECCcCC--Cc-----hHHHHHHHHhCCCC
Confidence 3456799999999998 999999999999882 21 36789998776554
No 145
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.63 E-value=4e-15 Score=134.63 Aligned_cols=111 Identities=30% Similarity=0.376 Sum_probs=94.6
Q ss_pred EEEEEEEeecCCCCccCCCCCC-CcEEEEEECC-EEEeecccCCCCCCeeccEEEEEeeC-CCceEEEEEEeCCcCCCCC
Q 003975 369 LELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN-KWIRTRTILDTLAPRWNEQYTWDVYD-PCTVITIGVFDNCYVNGSK 445 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-~~~rT~~~~~t~~P~wne~~~f~v~~-~~~~l~i~v~d~~~~~~~~ 445 (782)
|+|+|++|+||+..+. .+. ||||+|.+++ +.++|+++.++.||.|||.|.|.+.. ....|.|+|||++..+
T Consensus 1 l~v~vi~a~~L~~~~~---~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~--- 74 (115)
T cd04040 1 LTVDVISAENLPSADR---NGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGG--- 74 (115)
T ss_pred CEEEEEeeeCCCCCCC---CCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCC---
Confidence 5789999999998753 356 9999999965 56899999999999999999999986 4678999999999765
Q ss_pred CCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEE
Q 003975 446 DDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHL 491 (782)
Q Consensus 446 ~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l 491 (782)
++++||++.+++.++..+.....|++|.. +|..+.|.+.+
T Consensus 75 ---~~~~iG~~~~~l~~l~~~~~~~~~~~L~~---~g~~~~~~~~~ 114 (115)
T cd04040 75 ---KDDLLGSAYIDLSDLEPEETTELTLPLDG---QGGGKLGAVFL 114 (115)
T ss_pred ---CCCceEEEEEEHHHcCCCCcEEEEEECcC---CCCccCceEEc
Confidence 89999999999999999888999999975 34444576654
No 146
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.63 E-value=2.3e-15 Score=139.94 Aligned_cols=102 Identities=28% Similarity=0.456 Sum_probs=90.7
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEC----CeEeeeccccCCCCCccccEEEEEeccC---------------CCCe
Q 003975 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLG----NYKGITKHLEKNQNPVWNQIFAFSKERL---------------QSSL 102 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~----~~~~kT~~i~~t~nP~Wne~f~f~~~~~---------------~~~~ 102 (782)
|.|+|++|++|+.. ..|.+||||+|+++ +++++|++++++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 78999999999998 6789999999999999999999998654 4678
Q ss_pred EEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCC
Q 003975 103 LEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKK 149 (782)
Q Consensus 103 L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
|.|+|||++.. ++++||++.+++.++.... ....||+|....
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~-----~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAG-----SHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCC-----cccceEecCCcC
Confidence 99999999988 9999999999999998543 257899998865
No 147
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.63 E-value=6.2e-15 Score=135.04 Aligned_cols=119 Identities=27% Similarity=0.298 Sum_probs=96.9
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-EeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCcee
Q 003975 41 YLCVNVVKARNLPVMDVSGSLDPYVEVKLGNY-KGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDDFV 118 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~~l 118 (782)
.|.|+|.+|+ |...+..+.+||||+|+++++ .++|++++++.||+|||+|.|.+.. ...|.|+|||++.. ++++|
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~~~i 79 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKADVLL 79 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCCcEE
Confidence 6899999999 555555789999999999987 8999999999999999999999864 57899999999998 99999
Q ss_pred EEEEEEccccCCCCCCCCCCCCEEEEeccCCC-CcccceEEEEEE
Q 003975 119 GRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKG-DQTTKGEIMLAV 162 (782)
Q Consensus 119 G~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g-~~~~~G~l~l~~ 162 (782)
|++.++|.++.............|++|...+. .....|+|.+.+
T Consensus 80 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 80 GEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 99999999998754322222335899986552 113589998864
No 148
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.62 E-value=4.2e-15 Score=134.90 Aligned_cols=103 Identities=25% Similarity=0.401 Sum_probs=92.0
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCce
Q 003975 40 HYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDDF 117 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~~ 117 (782)
|.|.|+|++|++|+..+..|.+||||+|.+++ ..++|+++.++.||+|||+|.|.+... ...|.|+|||++.. +|++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d~~ 79 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKDRS 79 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCCCe
Confidence 67999999999999999889999999999987 568999999999999999999988764 47899999999988 8999
Q ss_pred eEEEEEEccccCCCCCCCCCCCCEEEEeccCC
Q 003975 118 VGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKK 149 (782)
Q Consensus 118 lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
||++.+++.++.... ...||.|.+..
T Consensus 80 IG~~~~~l~~l~~~~------~~~~~~~~~~~ 105 (120)
T cd04045 80 LGSVEINVSDLIKKN------EDGKYVEYDDE 105 (120)
T ss_pred eeEEEEeHHHhhCCC------CCceEEecCCC
Confidence 999999999998762 45788888765
No 149
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.62 E-value=2.7e-15 Score=136.16 Aligned_cols=101 Identities=32% Similarity=0.341 Sum_probs=90.2
Q ss_pred eEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC-EEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCCC
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN-KWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGS 444 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~ 444 (782)
|.|+|.|++|+||+..+.. +. ||||+|++++ ...+|+++.++.||.|||.|.|++..+...|.|+|||++.++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~---g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~-- 75 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGV---GKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVG-- 75 (120)
T ss_pred CeEEEEEEeeECCCCccCC---CCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCC--
Confidence 6899999999999987643 56 9999999977 579999999999999999999999887789999999999876
Q ss_pred CCCCCCCccEEEEEEcccccCCceEEEEEeeee
Q 003975 445 KDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLL 477 (782)
Q Consensus 445 ~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 477 (782)
+|++||++.++|.++..+ ..+.||-|..
T Consensus 76 ----~d~~IG~~~~~l~~l~~~-~~~~~~~~~~ 103 (120)
T cd04045 76 ----KDRSLGSVEINVSDLIKK-NEDGKYVEYD 103 (120)
T ss_pred ----CCCeeeEEEEeHHHhhCC-CCCceEEecC
Confidence 889999999999999876 5588998875
No 150
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.62 E-value=3.6e-15 Score=138.19 Aligned_cols=101 Identities=29% Similarity=0.394 Sum_probs=88.2
Q ss_pred eEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC-----EEEeecccCCCCCCeeccEEEEEeeCC--CceEEEEEEeC
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLAPRWNEQYTWDVYDP--CTVITIGVFDN 438 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~~~rT~~~~~t~~P~wne~~~f~v~~~--~~~l~i~v~d~ 438 (782)
+.|+|+|++|+||+..+. .+. ||||+|.+.+ ...||++++++.||.|||+|.|.+... ...|.|+|||+
T Consensus 13 ~~l~v~i~~a~nL~~~~~---~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~ 89 (131)
T cd04026 13 NKLTVEVREAKNLIPMDP---NGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDW 89 (131)
T ss_pred CEEEEEEEEeeCCCCcCC---CCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEEC
Confidence 599999999999998754 256 9999999953 679999999999999999999998754 46899999999
Q ss_pred CcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeee
Q 003975 439 CYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLL 477 (782)
Q Consensus 439 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 477 (782)
+.++ ++++||++.++|+++... ....||+|..
T Consensus 90 ~~~~------~~~~iG~~~~~l~~l~~~-~~~~w~~L~~ 121 (131)
T cd04026 90 DRTT------RNDFMGSLSFGVSELIKM-PVDGWYKLLN 121 (131)
T ss_pred CCCC------CcceeEEEEEeHHHhCcC-ccCceEECcC
Confidence 8765 899999999999999865 5688999985
No 151
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.62 E-value=3.2e-15 Score=138.67 Aligned_cols=105 Identities=32% Similarity=0.439 Sum_probs=89.4
Q ss_pred CCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-------eEeeeccccCCCCCccccEEEEEecc
Q 003975 25 GGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-------YKGITKHLEKNQNPVWNQIFAFSKER 97 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-------~~~kT~~i~~t~nP~Wne~f~f~~~~ 97 (782)
|-..++..|+ ...+.|.|+|++|++|+..+..|.+||||+|++.+ .+++|+++++|.||+|||+|.|.+..
T Consensus 3 G~l~~~l~y~--~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~ 80 (133)
T cd04009 3 GVLTVKAYYR--ASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPP 80 (133)
T ss_pred eEEEEEEEEc--CCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEech
Confidence 3344555554 46679999999999999998889999999999952 46899999999999999999999864
Q ss_pred ----CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCC
Q 003975 98 ----LQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLR 131 (782)
Q Consensus 98 ----~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~ 131 (782)
.....|.|+|||++.. ++++||++.++|.++..-
T Consensus 81 ~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 81 EQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred hhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 2356899999999988 799999999999999854
No 152
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.62 E-value=4.9e-15 Score=134.51 Aligned_cols=93 Identities=17% Similarity=0.193 Sum_probs=77.2
Q ss_pred CceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeeecccCCC-CCCcccceeEEEecCCC-CCeEEEEEE
Q 003975 199 PKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGN-----QLRVTRPSHVRS-VNPVWNEEHMFVASEPF-EDLIIVTVE 271 (782)
Q Consensus 199 p~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~~T~~~~~~t-~nP~wne~f~f~v~~~~-~~~l~i~V~ 271 (782)
|..+.|+|+|++|+||++....+.+||||+|++-. .+++|+++++ + .||+|||+|.|.+.... +..+.|+||
T Consensus 11 p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~-t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~ 89 (135)
T cd08692 11 AVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKS-SNGQVKWGETMIFPVTQQEHGIQFLIKLY 89 (135)
T ss_pred CcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEEC-CCCCceecceEEEeCCchhheeEEEEEEE
Confidence 34467999999999999987677789999999932 4678888876 7 46999999999997543 337889999
Q ss_pred EccCCCCCceeEEEEEeCCCc
Q 003975 272 DRIRPGKDEILGRELIPVRNV 292 (782)
Q Consensus 272 d~~~~~~d~~iG~~~i~l~~l 292 (782)
|++..+++++||++.++.+..
T Consensus 90 d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 90 SRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred eCCCCcCCceEEEEEECCccC
Confidence 999888999999999999764
No 153
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.62 E-value=5.1e-15 Score=137.22 Aligned_cols=115 Identities=34% Similarity=0.503 Sum_probs=99.0
Q ss_pred CCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEeccC-
Q 003975 25 GGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKERL- 98 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~~- 98 (782)
|...++..|+. +.|.|+|++|++|+..+..+.+||||+|.+.+ ..++|++++++.||.|||+|.|.+...
T Consensus 2 g~~~~~~~~~~----~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~ 77 (131)
T cd04026 2 GRIYLKISVKD----NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPAD 77 (131)
T ss_pred cEEEEEEEECC----CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchh
Confidence 44566666666 78999999999999988889999999999963 578999999999999999999998643
Q ss_pred CCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCC
Q 003975 99 QSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKK 149 (782)
Q Consensus 99 ~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
....|.|+|||++.. ++++||++.++++++... ....||+|.+..
T Consensus 78 ~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~------~~~~w~~L~~~~ 123 (131)
T cd04026 78 KDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM------PVDGWYKLLNQE 123 (131)
T ss_pred cCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC------ccCceEECcCcc
Confidence 356899999999987 999999999999999854 257899998764
No 154
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.62 E-value=3.4e-15 Score=135.71 Aligned_cols=94 Identities=21% Similarity=0.349 Sum_probs=81.7
Q ss_pred cCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeC--CCceEEEEEEeCC
Q 003975 363 KGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYD--PCTVITIGVFDNC 439 (782)
Q Consensus 363 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~--~~~~l~i~v~d~~ 439 (782)
....|.|+|+|++|+||+. + ..+. ||||+|+++++.+||++++++.||+|||+|.|.... ....|.|+|||++
T Consensus 24 ~~~~~~L~V~V~~A~~L~~-d---~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d 99 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG-D---YFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRD 99 (127)
T ss_pred cCCcEEEEEEEEECCCCCc-C---cCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCC
Confidence 3557899999999999974 3 2356 999999999999999999999999999999997543 3679999999999
Q ss_pred cCCCCCCCCCCCccEEEEEEcccccCC
Q 003975 440 YVNGSKDDAKDQRIGKVRIRLSTLETD 466 (782)
Q Consensus 440 ~~~~~~~~~~d~~lG~~~i~l~~l~~~ 466 (782)
.++ +|++||++.++|.....+
T Consensus 100 ~~s------~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 100 NGW------DDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CCC------CCCeeEEEEEEecCCcee
Confidence 876 899999999999977643
No 155
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.61 E-value=2.3e-15 Score=135.01 Aligned_cols=101 Identities=26% Similarity=0.373 Sum_probs=87.7
Q ss_pred EEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC---eEeeeecccCCCCCCcccceeEEEecCC---CCCeEEEEEEEcc
Q 003975 202 YYLRVFVFEAQDLVPSDKG-RAPDACVRIQLGN---QLRVTRPSHVRSVNPVWNEEHMFVASEP---FEDLIIVTVEDRI 274 (782)
Q Consensus 202 ~~L~V~V~~a~~L~~~~~~-~~~dpyv~v~l~~---~~~~T~~~~~~t~nP~wne~f~f~v~~~---~~~~l~i~V~d~~ 274 (782)
|.|+|+|++|++|+..+.. +.+||||+|++.+ ..++|+++++ +.||.|||.|.|.+... ....|.|+|||++
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d 79 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRK-DLNPVWEETWFVLVTPDEVKAGERLSCRLWDSD 79 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECC-CCCCccceeEEEEeCchhccCCCEEEEEEEeCC
Confidence 5799999999999999987 8999999999943 4689999987 99999999999987654 3568999999999
Q ss_pred CCCCCceeEEEEEeCCCcccccCCCCCCCCceEEccC
Q 003975 275 RPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHK 311 (782)
Q Consensus 275 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 311 (782)
..+++++||++.++++++.. ...|+++..
T Consensus 80 ~~~~dd~lG~~~i~l~~l~~--------~~~~~~~~~ 108 (111)
T cd04041 80 RFTADDRLGRVEIDLKELIE--------DRNWMGRRE 108 (111)
T ss_pred CCCCCCcceEEEEEHHHHhc--------CCCCCcccc
Confidence 99999999999999999873 556887753
No 156
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.61 E-value=1.6e-15 Score=141.40 Aligned_cols=101 Identities=21% Similarity=0.250 Sum_probs=85.7
Q ss_pred eeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEEC--C---EEEeecccCCCCCCeeccEEEEEeeC---CCceEEEEEE
Q 003975 366 IGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYG--N---KWIRTRTILDTLAPRWNEQYTWDVYD---PCTVITIGVF 436 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~--~---~~~rT~~~~~t~~P~wne~~~f~v~~---~~~~l~i~v~ 436 (782)
.+.|.|+|++|+||+..+.. |. ||||++.+. + ...||++++++.||.|||.|.|.+.. ....|.|+||
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~---g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~ 90 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVS---GLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVL 90 (136)
T ss_pred CCeEEEEEEEeeCCCccccC---CCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 46899999999999987643 56 999999983 3 25789999999999999999999874 3457999999
Q ss_pred eCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeee
Q 003975 437 DNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLL 477 (782)
Q Consensus 437 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 477 (782)
|++.++ ++++||++.++++. .+....+|++|..
T Consensus 91 d~d~~~------~~~~iG~~~~~~~~--~~~~~~~w~~l~~ 123 (136)
T cd08404 91 DSDRVT------KNEVIGRLVLGPKA--SGSGGHHWKEVCN 123 (136)
T ss_pred ECCCCC------CCccEEEEEECCcC--CCchHHHHHHHHh
Confidence 999876 89999999999999 3556788999864
No 157
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.61 E-value=1.7e-15 Score=140.75 Aligned_cols=117 Identities=22% Similarity=0.372 Sum_probs=92.8
Q ss_pred CceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-C----eEeeeccccCCCCCccccEEEEEec--cCC
Q 003975 27 DKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLG-N----YKGITKHLEKNQNPVWNQIFAFSKE--RLQ 99 (782)
Q Consensus 27 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-~----~~~kT~~i~~t~nP~Wne~f~f~~~--~~~ 99 (782)
..+++.|. +..+.|.|+|++|++|+..|..|.+||||++++. + .+++|+++++|.||+|||+|.|.+. +..
T Consensus 3 i~~~l~y~--~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~ 80 (135)
T cd08410 3 LLLSLNYL--PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELE 80 (135)
T ss_pred EEEEEEEC--CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhC
Confidence 45566665 4568999999999999999999999999999983 2 3579999999999999999999985 344
Q ss_pred CCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCC
Q 003975 100 SSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGD 151 (782)
Q Consensus 100 ~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~ 151 (782)
...|.|+|||++.. ++++||++.+.....-.. ...+|+.|....+.
T Consensus 81 ~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~~------~~~~W~~l~~~~~~ 127 (135)
T cd08410 81 NVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGPS------ETNHWRRMLNSQRT 127 (135)
T ss_pred CCEEEEEEEeCCCCCCCcEEEEEEEcCccCCch------HHHHHHHHHhCCCC
Confidence 55799999999988 999999998664332211 24678888776554
No 158
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.61 E-value=3e-15 Score=139.09 Aligned_cols=102 Identities=22% Similarity=0.322 Sum_probs=89.7
Q ss_pred EEEEEEEeecCCCCccCCCCCC-CcEEEEEEC----CEEEeecccCCCCCCeeccEEEEEeeCC----------------
Q 003975 369 LELGILSAKNLMQMKSKDGKLT-DAYCVAKYG----NKWIRTRTILDTLAPRWNEQYTWDVYDP---------------- 427 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~----~~~~rT~~~~~t~~P~wne~~~f~v~~~---------------- 427 (782)
|+|.|++|+||+.+ .. +. ||||+|+++ +...||+++.++.||.|||.|.|.+...
T Consensus 1 L~V~Vi~A~~L~~~-~~---g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~ 76 (137)
T cd08675 1 LSVRVLECRDLALK-SN---GTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLE 76 (137)
T ss_pred CEEEEEEccCCCcc-cC---CCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEcccccccccccccccccccc
Confidence 57899999999876 32 56 999999998 7789999999999999999999998764
Q ss_pred CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCC
Q 003975 428 CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTP 480 (782)
Q Consensus 428 ~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~ 480 (782)
...|.|+|||++..+ ++++||++.|+|.++........||+|.....
T Consensus 77 ~~~l~i~V~d~~~~~------~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~~ 123 (137)
T cd08675 77 KSELRVELWHASMVS------GDDFLGEVRIPLQGLQQAGSHQAWYFLQPREA 123 (137)
T ss_pred ccEEEEEEEcCCcCc------CCcEEEEEEEehhhccCCCcccceEecCCcCC
Confidence 358999999999765 89999999999999988777899999987554
No 159
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.61 E-value=1e-14 Score=132.32 Aligned_cols=112 Identities=30% Similarity=0.494 Sum_probs=88.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-EeeeccccCCCCCccccEEEEEeccC--CCCeEEEEEEeCCCC-CCce
Q 003975 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNY-KGITKHLEKNQNPVWNQIFAFSKERL--QSSLLEVTVKDKDIG-KDDF 117 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~kT~~i~~t~nP~Wne~f~f~~~~~--~~~~L~i~V~d~d~~-~d~~ 117 (782)
|.|+|++|++|+.. |.+||||+++++++ .++|+++++ .||.|||+|.|.+... ....|.|.+||.+.. ++.+
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV 77 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence 78999999999976 78999999999985 479999999 9999999999998653 245688888988876 6777
Q ss_pred eEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEe
Q 003975 118 VGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWM 164 (782)
Q Consensus 118 lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~ 164 (782)
+|.+.+.. +..+ ...++||+|.+..+.....|+|++.+.|
T Consensus 78 ~g~v~l~~--~~~~-----~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 78 IGKVALSK--LDLG-----QGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEEecC--cCCC-----CcceeEEECccCCCCCCcCceEEEEEEC
Confidence 77765544 4332 2367999998866543468999999865
No 160
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.61 E-value=7.7e-15 Score=133.22 Aligned_cols=111 Identities=32% Similarity=0.497 Sum_probs=87.7
Q ss_pred EEEEEEEeecCCCCccCCCCCC-CcEEEEEECCE-EEeecccCCCCCCeeccEEEEEeeCC---CceEEEEEEeCCcCCC
Q 003975 369 LELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNK-WIRTRTILDTLAPRWNEQYTWDVYDP---CTVITIGVFDNCYVNG 443 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~-~~rT~~~~~t~~P~wne~~~f~v~~~---~~~l~i~v~d~~~~~~ 443 (782)
|+|+|++|+||+.. +. ||||+++++++ .++|+++++ .||.|||+|.|.+... ...|.|.+||.+..+
T Consensus 2 L~v~vi~a~~l~~~------~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~- 73 (117)
T cd08383 2 LRLRILEAKNLPSK------GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKD- 73 (117)
T ss_pred eEEEEEEecCCCcC------CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCC-
Confidence 78999999999864 45 99999999885 589999999 9999999999999863 457888889887543
Q ss_pred CCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 444 SKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 444 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
++..+|++.| ..+..+.....||+|..... +....|+|+|+++|
T Consensus 74 -----~~~~~g~v~l--~~~~~~~~~~~w~~L~~~~~-~~~~~G~l~l~~~~ 117 (117)
T cd08383 74 -----RDIVIGKVAL--SKLDLGQGKDEWFPLTPVDP-DSEVQGSVRLRARY 117 (117)
T ss_pred -----CeeEEEEEEe--cCcCCCCcceeEEECccCCC-CCCcCceEEEEEEC
Confidence 5666776555 45555777899999986544 23457999999865
No 161
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.61 E-value=1.4e-15 Score=141.33 Aligned_cols=117 Identities=24% Similarity=0.368 Sum_probs=94.8
Q ss_pred CceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC------eEeeeccccCCCCCccccEEEEEec--cC
Q 003975 27 DKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN------YKGITKHLEKNQNPVWNQIFAFSKE--RL 98 (782)
Q Consensus 27 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~------~~~kT~~i~~t~nP~Wne~f~f~~~--~~ 98 (782)
..+++.|+- ..+.|.|+|++|+||+..+..|.+||||++.+.. .++||++++++.||+|||+|.|.+. ++
T Consensus 4 i~~sL~Y~~--~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l 81 (138)
T cd08408 4 LLLGLEYNA--LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQL 81 (138)
T ss_pred EEEEeEEcC--CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHh
Confidence 456666665 5679999999999999999899999999999942 2569999999999999999999986 45
Q ss_pred CCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCC
Q 003975 99 QSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGD 151 (782)
Q Consensus 99 ~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~ 151 (782)
....|.|.|||++.+ ++++||++.+++...-.. ...+|+.+....+.
T Consensus 82 ~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~~------~~~hW~~~l~~~~~ 129 (138)
T cd08408 82 SEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEE------EEEHWNEMKESKGQ 129 (138)
T ss_pred CccEEEEEEEECCCCCCCcEEEEEEECCcCCCch------HHHHHHHHHhCCCC
Confidence 567999999999988 999999999987644221 13578877665443
No 162
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.61 E-value=1.8e-15 Score=141.15 Aligned_cols=117 Identities=30% Similarity=0.348 Sum_probs=94.3
Q ss_pred CCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEecc--C
Q 003975 26 GDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKER--L 98 (782)
Q Consensus 26 ~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~--~ 98 (782)
...+++.|. +..+.|.|+|++|++|+..+..|.+||||+|++++ .+++|++++++.||+|||+|.|.+.. .
T Consensus 3 ~l~~~l~y~--~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l 80 (136)
T cd08402 3 DICFSLRYV--PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQI 80 (136)
T ss_pred EEEEEeEEc--CCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHh
Confidence 344555554 46789999999999999999999999999999952 35789999999999999999999853 3
Q ss_pred CCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCC
Q 003975 99 QSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGD 151 (782)
Q Consensus 99 ~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~ 151 (782)
....|.|+|||++.. +|++||++.+++..... ...+|+++...++.
T Consensus 81 ~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~~~-------~~~~W~~~~~~~~~ 127 (136)
T cd08402 81 QKVHLIVTVLDYDRIGKNDPIGKVVLGCNATGA-------ELRHWSDMLASPRR 127 (136)
T ss_pred CCCEEEEEEEeCCCCCCCceeEEEEECCccCCh-------HHHHHHHHHhCCCC
Confidence 345899999999988 89999999999876421 25678877665433
No 163
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.61 E-value=6.2e-15 Score=136.73 Aligned_cols=91 Identities=20% Similarity=0.272 Sum_probs=79.3
Q ss_pred eeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEEC-------CEEEeecccCCCCCCeeccEEEEEeeCC-----CceEE
Q 003975 366 IGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYG-------NKWIRTRTILDTLAPRWNEQYTWDVYDP-----CTVIT 432 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~-------~~~~rT~~~~~t~~P~wne~~~f~v~~~-----~~~l~ 432 (782)
.+.|+|+|++|+||+.++.. +. ||||+|++. ....||+++++|+||+|||.|.|++... ...|.
T Consensus 15 ~~~L~V~Vi~A~~L~~~~~~---g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~ 91 (133)
T cd04009 15 EQSLRVEILNARNLLPLDSN---GSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLL 91 (133)
T ss_pred CCEEEEEEEEeeCCCCcCCC---CCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEE
Confidence 46899999999999987643 56 999999985 3479999999999999999999998752 45899
Q ss_pred EEEEeCCcCCCCCCCCCCCccEEEEEEcccccC
Q 003975 433 IGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLET 465 (782)
Q Consensus 433 i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~ 465 (782)
|+|||++.++ +|++||++.++|+++..
T Consensus 92 ~~V~d~d~~~------~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 92 FTVKDYDLLG------SNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEEEecCCCC------CCcEeEEEEEeHHHCCc
Confidence 9999999875 79999999999999864
No 164
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.60 E-value=1.9e-15 Score=140.98 Aligned_cols=118 Identities=34% Similarity=0.499 Sum_probs=96.0
Q ss_pred CCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--C---eEeeeccccCCCCCccccEEEEEec--c
Q 003975 25 GGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLG--N---YKGITKHLEKNQNPVWNQIFAFSKE--R 97 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~--~---~~~kT~~i~~t~nP~Wne~f~f~~~--~ 97 (782)
|...+++.|+- ..+.|.|+|++|+||+..+..|.+||||+|++. + .+.+|++++++.||+|||+|.|.+. .
T Consensus 2 G~l~~sl~y~~--~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~ 79 (136)
T cd08405 2 GELLLSLCYNP--TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLER 79 (136)
T ss_pred cEEEEEEEEcC--CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHH
Confidence 44566777765 567899999999999999989999999999983 2 3579999999999999999999975 3
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCC
Q 003975 98 LQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGD 151 (782)
Q Consensus 98 ~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~ 151 (782)
.....|.|+|||++.. ++++||++.+++.+... ...+|++|....+.
T Consensus 80 ~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~~~-------~~~~w~~~~~~~~~ 127 (136)
T cd08405 80 LRETTLIITVMDKDRLSRNDLIGKIYLGWKSGGL-------ELKHWKDMLSKPRQ 127 (136)
T ss_pred hCCCEEEEEEEECCCCCCCcEeEEEEECCccCCc-------hHHHHHHHHhCCCC
Confidence 3456899999999988 89999999999987621 24567777665543
No 165
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.60 E-value=1.1e-14 Score=135.72 Aligned_cols=90 Identities=23% Similarity=0.354 Sum_probs=78.4
Q ss_pred EEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEeeeecccCCCCCCcccceeEEEecC--CCCCeEEEEEEEcc
Q 003975 202 YYLRVFVFEAQDLVPSDKGRAPDACVRIQLG--N---QLRVTRPSHVRSVNPVWNEEHMFVASE--PFEDLIIVTVEDRI 274 (782)
Q Consensus 202 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~--~---~~~~T~~~~~~t~nP~wne~f~f~v~~--~~~~~l~i~V~d~~ 274 (782)
+.|.|+|++|++|+..+..+.+||||++++. + ..++|+++++ +.||.|||.|.|.+.. ..+..|.|+|||++
T Consensus 15 ~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~ 93 (136)
T cd08405 15 NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKR-TLNPVFNESFIFNIPLERLRETTLIITVMDKD 93 (136)
T ss_pred CeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeC-CCCCcccceEEEeCCHHHhCCCEEEEEEEECC
Confidence 4699999999999999988999999999983 2 3578888886 9999999999998753 23568999999999
Q ss_pred CCCCCceeEEEEEeCCCc
Q 003975 275 RPGKDEILGRELIPVRNV 292 (782)
Q Consensus 275 ~~~~d~~iG~~~i~l~~l 292 (782)
..+++++||++.+++...
T Consensus 94 ~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 94 RLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred CCCCCcEeEEEEECCccC
Confidence 999999999999999875
No 166
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.60 E-value=4.8e-15 Score=135.57 Aligned_cols=90 Identities=33% Similarity=0.556 Sum_probs=82.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeE--eeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCce
Q 003975 41 YLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYK--GITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDDF 117 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~--~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~~ 117 (782)
+|+|+|++|++|+..|..|.+||||++++++++ .+|+++++|.||+|||+|.|.+.......|.|+|||++.. +|++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 378999999999999999999999999999864 5788899999999999999998766678999999999998 9999
Q ss_pred eEEEEEEccccCC
Q 003975 118 VGRVSLDLSQVPL 130 (782)
Q Consensus 118 lG~~~v~l~~l~~ 130 (782)
||++.+++.+...
T Consensus 81 iG~~~i~l~~~~~ 93 (124)
T cd04037 81 IGETVIDLEDRFF 93 (124)
T ss_pred eEEEEEeeccccc
Confidence 9999999998864
No 167
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.60 E-value=8.3e-15 Score=136.65 Aligned_cols=103 Identities=26% Similarity=0.339 Sum_probs=84.0
Q ss_pred ceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeeecccCCCCCCcccceeEEEecCCC--CCeEEEEEEE
Q 003975 200 KLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGN-----QLRVTRPSHVRSVNPVWNEEHMFVASEPF--EDLIIVTVED 272 (782)
Q Consensus 200 ~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~~T~~~~~~t~nP~wne~f~f~v~~~~--~~~l~i~V~d 272 (782)
..+.|.|+|++|++|+..+.++.+||||+|+++. ..++|+++++ +.||.|||+|.|.+.... ...|.|+|||
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l~~~~l~~~v~d 91 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKR-TLNPYYNESFSFEVPFEQIQKVHLIVTVLD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeC-CCCCcccceEEEECCHHHhCCCEEEEEEEe
Confidence 3456999999999999999999999999999942 3567888776 999999999999986432 3479999999
Q ss_pred ccCCCCCceeEEEEEeCCCcccccCCCCCCCCceEEcc
Q 003975 273 RIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLH 310 (782)
Q Consensus 273 ~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 310 (782)
++..+++++||++.+++.... ....+|+++.
T Consensus 92 ~~~~~~~~~iG~~~i~~~~~~-------~~~~~W~~~~ 122 (136)
T cd08402 92 YDRIGKNDPIGKVVLGCNATG-------AELRHWSDML 122 (136)
T ss_pred CCCCCCCceeEEEEECCccCC-------hHHHHHHHHH
Confidence 999999999999999997642 1245666554
No 168
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.59 E-value=1e-14 Score=135.55 Aligned_cols=105 Identities=20% Similarity=0.284 Sum_probs=83.7
Q ss_pred eEEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeeecccCCCCCCcccceeEEEecCC--CCCeEEEEEEEc
Q 003975 201 LYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGN-----QLRVTRPSHVRSVNPVWNEEHMFVASEP--FEDLIIVTVEDR 273 (782)
Q Consensus 201 ~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~~T~~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~ 273 (782)
.+.|.|+|++|++|+..+..+.+||||++.+.. +.++|+++++ +.||.|||+|.|.+... ....|.|+|||+
T Consensus 13 ~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~ 91 (135)
T cd08410 13 AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRG-TIDPFYNESFSFKVPQEELENVSLVFTVYGH 91 (135)
T ss_pred CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccC-CCCCccceeEEEeCCHHHhCCCEEEEEEEeC
Confidence 356999999999999999889999999999832 3568888886 99999999999998532 344799999999
Q ss_pred cCCCCCceeEEEEEeCCCcccccCCCCCCCCceEEccCC
Q 003975 274 IRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKP 312 (782)
Q Consensus 274 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 312 (782)
+..+++++||++.++..... .....+|+.+...
T Consensus 92 d~~~~~~~iG~~~l~~~~~~------~~~~~~W~~l~~~ 124 (135)
T cd08410 92 NVKSSNDFIGRIVIGQYSSG------PSETNHWRRMLNS 124 (135)
T ss_pred CCCCCCcEEEEEEEcCccCC------chHHHHHHHHHhC
Confidence 99999999999987754332 1224667766543
No 169
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.59 E-value=1.7e-14 Score=132.04 Aligned_cols=115 Identities=22% Similarity=0.280 Sum_probs=92.9
Q ss_pred EEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCE-EEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCCCC
Q 003975 368 TLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNK-WIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGSK 445 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~-~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~~ 445 (782)
.|+|+|++|+ |...+. .+. ||||+|+++++ ..+|++++++.||+|||.|.|.+.. ...|.|+|||++..+
T Consensus 3 ~L~V~i~~a~-l~~~~~---~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~--- 74 (125)
T cd04021 3 QLQITVESAK-LKSNSK---SFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLK--- 74 (125)
T ss_pred eEEEEEEeeE-CCCCCc---CCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-CCEEEEEEEeCCCCC---
Confidence 6899999998 554432 355 99999999987 8999999999999999999999864 579999999999876
Q ss_pred CCCCCCccEEEEEEcccccCCce-----EEEEEeeeecCCCCCCcCcEEEEEE
Q 003975 446 DDAKDQRIGKVRIRLSTLETDRI-----YTHYYPLLLLTPSGLKNNGELHLAL 493 (782)
Q Consensus 446 ~~~~d~~lG~~~i~l~~l~~~~~-----~~~w~~L~~~~~~g~~~~G~i~l~~ 493 (782)
.|++||++.++|+++..... ...|+++...........|+|++++
T Consensus 75 ---~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 75 ---ADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred ---CCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 89999999999999865322 4569999854421234579998875
No 170
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.59 E-value=3.3e-15 Score=139.00 Aligned_cols=103 Identities=18% Similarity=0.315 Sum_probs=85.7
Q ss_pred ceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC-----EEEeecccCCCCCCeeccEEEEEeeC---CCceEEEEE
Q 003975 365 SIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLAPRWNEQYTWDVYD---PCTVITIGV 435 (782)
Q Consensus 365 ~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~~~rT~~~~~t~~P~wne~~~f~v~~---~~~~l~i~v 435 (782)
..+.|.|.|++|+||++.+ . +. ||||++.+.+ ++.||++++++.||+|||.|.|.+.. ....|.|+|
T Consensus 13 ~~~~L~V~V~~a~nL~~~~-~---~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V 88 (137)
T cd08409 13 TLNRLTVVVLRARGLRQLD-H---AHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSV 88 (137)
T ss_pred CCCeEEEEEEEecCCCccc-C---CCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEE
Confidence 3469999999999999875 2 45 9999999842 36799999999999999999999963 235899999
Q ss_pred EeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeee
Q 003975 436 FDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLL 477 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 477 (782)
||.+.++ ++++||++.|+......+....+|..+..
T Consensus 89 ~~~~~~~------~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 89 MQSGGVR------KSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred EeCCCCC------CcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 9999765 89999999999877666666677877764
No 171
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.58 E-value=2e-14 Score=133.72 Aligned_cols=104 Identities=27% Similarity=0.315 Sum_probs=85.0
Q ss_pred cCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEEC--C---EEEeecccCCCCCCeeccEEEEEeeCC---CceEEE
Q 003975 363 KGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYG--N---KWIRTRTILDTLAPRWNEQYTWDVYDP---CTVITI 433 (782)
Q Consensus 363 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~--~---~~~rT~~~~~t~~P~wne~~~f~v~~~---~~~l~i 433 (782)
.+..|.|+|+|++|++|++++.. |. ||||+|.+. + ...+|++++++.||.|||.|.|.+... ...|.|
T Consensus 10 ~~~~~~L~V~v~~A~~L~~~d~~---g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~ 86 (134)
T cd08403 10 LPTAGRLTLTIIKARNLKAMDIT---GFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLII 86 (134)
T ss_pred cCCCCEEEEEEEEeeCCCccccC---CCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEE
Confidence 34568999999999999988643 56 999999983 2 357999999999999999999998642 247999
Q ss_pred EEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeee
Q 003975 434 GVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLL 477 (782)
Q Consensus 434 ~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 477 (782)
+|||++.++ +|++||++.|++... +....+|+++..
T Consensus 87 ~v~d~~~~~------~~~~IG~~~l~~~~~--~~~~~~w~~~~~ 122 (134)
T cd08403 87 AVVDYDRVG------HNELIGVCRVGPNAD--GQGREHWNEMLA 122 (134)
T ss_pred EEEECCCCC------CCceeEEEEECCCCC--CchHHHHHHHHH
Confidence 999999876 899999999998743 444578888764
No 172
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.58 E-value=4.5e-15 Score=138.09 Aligned_cols=117 Identities=25% Similarity=0.337 Sum_probs=93.5
Q ss_pred CCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEec--c
Q 003975 25 GGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKE--R 97 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~--~ 97 (782)
|...+++.|+- ..+.|.|+|++|+||+..+ .+.+||||+|.+.+ .+++|++++++.||+|||+|.|.+. +
T Consensus 2 G~i~~sl~y~~--~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~ 78 (137)
T cd08409 2 GDIQISLTYNP--TLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQ 78 (137)
T ss_pred cEEEEEEEECC--CCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHH
Confidence 34556666665 5679999999999999988 88899999999853 3679999999999999999999985 4
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCC
Q 003975 98 LQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKK 149 (782)
Q Consensus 98 ~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
+....|.|+|||++.. ++++||++.+.......+. ...+|.++....
T Consensus 79 l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~-----~~~hW~~~~~~p 126 (137)
T cd08409 79 LDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGK-----ELEHWNDMLSKP 126 (137)
T ss_pred hCccEEEEEEEeCCCCCCcceEEEEEECCcccCCCh-----HHHHHHHHHhCC
Confidence 5567899999999988 9999999999865544321 245676666543
No 173
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.58 E-value=6.6e-15 Score=136.93 Aligned_cols=117 Identities=24% Similarity=0.311 Sum_probs=93.6
Q ss_pred CCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEecc--C
Q 003975 26 GDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKER--L 98 (782)
Q Consensus 26 ~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~--~ 98 (782)
...+++.|.- ..+.|.|+|++|++|+..+..|.+||||+|++.. .+++|++++++.||+|||+|.|.+.. .
T Consensus 2 ~l~~~~~y~~--~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~ 79 (134)
T cd08403 2 ELMFSLCYLP--TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENV 79 (134)
T ss_pred eEEEEEEEcC--CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHh
Confidence 3456666664 6789999999999999999999999999999842 35799999999999999999999753 3
Q ss_pred CCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCC
Q 003975 99 QSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGD 151 (782)
Q Consensus 99 ~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~ 151 (782)
....|.|+|||++.. ++++||++.+++..... ....|+++...++.
T Consensus 80 ~~~~l~~~v~d~~~~~~~~~IG~~~l~~~~~~~-------~~~~w~~~~~~~~~ 126 (134)
T cd08403 80 DNVSLIIAVVDYDRVGHNELIGVCRVGPNADGQ-------GREHWNEMLANPRK 126 (134)
T ss_pred CCCEEEEEEEECCCCCCCceeEEEEECCCCCCc-------hHHHHHHHHHCCCC
Confidence 345799999999998 89999999998763211 24567777665444
No 174
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.57 E-value=1.8e-14 Score=133.90 Aligned_cols=103 Identities=17% Similarity=0.248 Sum_probs=84.7
Q ss_pred eEEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eEeeeecccCCCCCCcccceeEEEecC--CCCCeEEEEEEE
Q 003975 201 LYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGN------QLRVTRPSHVRSVNPVWNEEHMFVASE--PFEDLIIVTVED 272 (782)
Q Consensus 201 ~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~------~~~~T~~~~~~t~nP~wne~f~f~v~~--~~~~~l~i~V~d 272 (782)
.+.|.|+|++|+||+..+.++.+||||++++.. .+++|+++++ +.||+|||+|.|.+.. .....|.|+|||
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~-t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~ 92 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRG-QPDPEFKETFVFQVALFQLSEVTLMFSVYN 92 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecC-CCCCcEeeeEEEECCHHHhCccEEEEEEEE
Confidence 356999999999999999889999999999943 2468888886 9999999999999864 345699999999
Q ss_pred ccCCCCCceeEEEEEeCCCcccccCCCCCCCCceEEcc
Q 003975 273 RIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLH 310 (782)
Q Consensus 273 ~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 310 (782)
++..+++++||++.+++..... ....+|+.+.
T Consensus 93 ~~~~~~~~~iG~v~l~~~~~~~------~~~~hW~~~l 124 (138)
T cd08408 93 KRKMKRKEMIGWFSLGLNSSGE------EEEEHWNEMK 124 (138)
T ss_pred CCCCCCCcEEEEEEECCcCCCc------hHHHHHHHHH
Confidence 9999999999999999875432 1235676654
No 175
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.57 E-value=4.7e-14 Score=130.26 Aligned_cols=117 Identities=30% Similarity=0.496 Sum_probs=99.2
Q ss_pred eEEEEEEEEeeCCCCCC--CCCCCCcEEEEEEC------CeEeeeccccCCC-CCccccEEEEEeccCCCCeEEEEEEeC
Q 003975 40 HYLCVNVVKARNLPVMD--VSGSLDPYVEVKLG------NYKGITKHLEKNQ-NPVWNQIFAFSKERLQSSLLEVTVKDK 110 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d--~~g~~dPyv~v~~~------~~~~kT~~i~~t~-nP~Wne~f~f~~~~~~~~~L~i~V~d~ 110 (782)
..|.|+|++|++|+..+ ..+.+||||++++. ..+.+|+++.++. ||+|||+|.|.+.......|.|+|||.
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 36899999999999887 57899999999993 4568999988876 999999999998765567899999999
Q ss_pred CCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEe
Q 003975 111 DIGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWM 164 (782)
Q Consensus 111 d~~~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~ 164 (782)
+..++++||++.+++.++..+ ..|++|.+..|.....|.|.+.+++
T Consensus 82 ~~~~~~~iG~~~~~l~~l~~g--------~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSGDDDFLGQACLPLDSLRQG--------YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CCCCCcEeEEEEEEhHHhcCc--------eEEEEecCCCCCCCcceeEEEEEEE
Confidence 877899999999999999543 3689999887764467999988764
No 176
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.57 E-value=1.5e-14 Score=135.63 Aligned_cols=102 Identities=28% Similarity=0.506 Sum_probs=89.0
Q ss_pred cCCceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----------------------------EeeeecccCCCCC
Q 003975 197 FSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQ-----------------------------LRVTRPSHVRSVN 247 (782)
Q Consensus 197 ~~p~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~-----------------------------~~~T~~~~~~t~n 247 (782)
..|..+.|+|+|++|++|.+.+.+|.+||||+|.++.. .++|+++++ +.|
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~-tln 101 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQ-TLN 101 (153)
T ss_pred cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecC-CCC
Confidence 45788999999999999999999999999999999632 367888876 999
Q ss_pred CcccceeEEEecCCCCCeEEEEEEEccCCCCCceeEEEEEeCCCcccccCCCCCCCCceEEc
Q 003975 248 PVWNEEHMFVASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNL 309 (782)
Q Consensus 248 P~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L 309 (782)
|.|||+|.|.+.......|.|+|||++ +++||++.++++++.. .....||+|
T Consensus 102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~------~~~d~W~~L 153 (153)
T cd08676 102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS------CGLDSWFKL 153 (153)
T ss_pred CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC------CCCCCeEeC
Confidence 999999999998766789999999987 8899999999999873 136899986
No 177
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.57 E-value=1.9e-14 Score=129.00 Aligned_cols=101 Identities=28% Similarity=0.433 Sum_probs=86.6
Q ss_pred CCCCCCcEEEEEECCe-EeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCCCCceeEEEEEEccccCCCCCCC
Q 003975 57 VSGSLDPYVEVKLGNY-KGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDFVGRVSLDLSQVPLRVPPD 135 (782)
Q Consensus 57 ~~g~~dPyv~v~~~~~-~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~~d~~lG~~~v~l~~l~~~~~~~ 135 (782)
.+|.+||||+|+++++ ..+|+++.++.||+|||.|.|.+.+.....|.|+|+|++..++++||.+.++|+++.....
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~-- 86 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATS-- 86 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhh--
Confidence 4688999999999885 5799999999999999999999987667889999999997789999999999999975421
Q ss_pred CCCCCEEEEeccCCCCcccceEEEEEEEecc
Q 003975 136 SPLAPQWYRLEDKKGDQTTKGEIMLAVWMGT 166 (782)
Q Consensus 136 ~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~ 166 (782)
...+||+|.+. ..|+|++++.|.+
T Consensus 87 --~~~~w~~L~~~-----~~G~i~~~~~~~p 110 (111)
T cd04052 87 --VGQQWFPLSGN-----GQGRIRISALWKP 110 (111)
T ss_pred --ccceeEECCCC-----CCCEEEEEEEEec
Confidence 35799999862 3699999988764
No 178
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.57 E-value=5.6e-15 Score=137.62 Aligned_cols=102 Identities=25% Similarity=0.325 Sum_probs=87.4
Q ss_pred ceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC-----EEEeecccCCCCCCeeccEEEEEeeCC---CceEEEEE
Q 003975 365 SIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLAPRWNEQYTWDVYDP---CTVITIGV 435 (782)
Q Consensus 365 ~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~~~rT~~~~~t~~P~wne~~~f~v~~~---~~~l~i~v 435 (782)
..+.|.|.|++|+||+..+. .+. ||||++.+.+ ...+|+++.++.||.|||+|.|.+... ...|.|+|
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~---~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v 88 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDG---KGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITV 88 (134)
T ss_pred CCCEEEEEEEEeeCCCCccC---CCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEE
Confidence 34799999999999998753 355 9999999854 257999999999999999999998764 47899999
Q ss_pred EeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeee
Q 003975 436 FDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLL 477 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 477 (782)
||.+..+ ++++||.+.+++++ .+...++|++|..
T Consensus 89 ~d~~~~~------~~~~lG~~~i~l~~--~~~~~~~W~~l~~ 122 (134)
T cd00276 89 VDKDSVG------RNEVIGQVVLGPDS--GGEELEHWNEMLA 122 (134)
T ss_pred EecCCCC------CCceeEEEEECCCC--CCcHHHHHHHHHh
Confidence 9998765 89999999999999 5666789999986
No 179
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.56 E-value=1.5e-15 Score=155.81 Aligned_cols=105 Identities=34% Similarity=0.556 Sum_probs=93.7
Q ss_pred eeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEecc-CCCCeEEEEEEeCCC
Q 003975 39 MHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKER-LQSSLLEVTVKDKDI 112 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~-~~~~~L~i~V~d~d~ 112 (782)
-..|.|+|.+|+||.++|.+|.|||||++++-. .+++|++++.|+||+|||+|.|.+.. .....|.|+|||+|.
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr 258 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR 258 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc
Confidence 357999999999999999999999999999942 47899999999999999999999863 346789999999999
Q ss_pred C-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCC
Q 003975 113 G-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKK 149 (782)
Q Consensus 113 ~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
. ++||+|+.++.+++|.+.+ ...||.|..+.
T Consensus 259 TsRNDFMGslSFgisEl~K~p------~~GWyKlLsqe 290 (683)
T KOG0696|consen 259 TSRNDFMGSLSFGISELQKAP------VDGWYKLLSQE 290 (683)
T ss_pred cccccccceecccHHHHhhcc------hhhHHHHhhhh
Confidence 9 9999999999999999863 56799998765
No 180
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.56 E-value=6.8e-15 Score=137.06 Aligned_cols=116 Identities=31% Similarity=0.361 Sum_probs=97.1
Q ss_pred CceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEeccC--C
Q 003975 27 DKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKERL--Q 99 (782)
Q Consensus 27 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~~--~ 99 (782)
.++++.|+- ..+.|.|+|++|++|+..+..+.+||||++++.+ .+++|+++.++.||.|||+|.|.+... .
T Consensus 3 i~~~l~y~~--~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~ 80 (134)
T cd00276 3 LLLSLSYLP--TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLE 80 (134)
T ss_pred EEEEEEeeC--CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhC
Confidence 455666654 4579999999999999998889999999999964 257999999999999999999998643 3
Q ss_pred CCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCC
Q 003975 100 SSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGD 151 (782)
Q Consensus 100 ~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~ 151 (782)
...|.|+|||.+.. ++++||.+.+++.+ .+. ...+|++|.+..++
T Consensus 81 ~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~-----~~~~W~~l~~~~~~ 126 (134)
T cd00276 81 EVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGE-----ELEHWNEMLASPRK 126 (134)
T ss_pred CcEEEEEEEecCCCCCCceeEEEEECCCC--CCc-----HHHHHHHHHhCCCC
Confidence 67899999999987 99999999999999 221 36789999887654
No 181
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.56 E-value=3.3e-14 Score=132.13 Aligned_cols=104 Identities=18% Similarity=0.218 Sum_probs=86.7
Q ss_pred ceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeeecccCCCCCCcccceeEEEecCC--CCCeEEEEEEE
Q 003975 200 KLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGN-----QLRVTRPSHVRSVNPVWNEEHMFVASEP--FEDLIIVTVED 272 (782)
Q Consensus 200 ~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~~T~~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d 272 (782)
..+.|.|+|++|++|+..+..+.+||||++.+.+ ..++|+++++ +.||.|||+|.|.+... ....|.|+|||
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~l~~~~l~~~V~d 89 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKK-TLNPEFNEEFFYDIKHSDLAKKTLEITVWD 89 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEec-cCCCCcccEEEEECCHHHhCCCEEEEEEEe
Confidence 4467999999999999999889999999999953 4578999886 99999999999998643 34689999999
Q ss_pred ccCCCCCceeEEEEEeCCCcccccCCCCCCCCceEEccC
Q 003975 273 RIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHK 311 (782)
Q Consensus 273 ~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 311 (782)
++..+++++||++.++++... ....+|+++..
T Consensus 90 ~d~~~~~~~lG~~~i~l~~~~-------~~~~~W~~~l~ 121 (133)
T cd08384 90 KDIGKSNDYIGGLQLGINAKG-------ERLRHWLDCLK 121 (133)
T ss_pred CCCCCCccEEEEEEEecCCCC-------chHHHHHHHHh
Confidence 998889999999999997522 12567886643
No 182
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=2.4e-15 Score=150.31 Aligned_cols=224 Identities=19% Similarity=0.246 Sum_probs=170.2
Q ss_pred ceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEe--c-cCC
Q 003975 28 KTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSK--E-RLQ 99 (782)
Q Consensus 28 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~--~-~~~ 99 (782)
++..-|+- ....+..+|..|++|+.++.+|..|||++..++. .+.+|++..+++||.|+|+-.... . +..
T Consensus 83 ~~~~~y~~--~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~ 160 (362)
T KOG1013|consen 83 EFELLYDS--ESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTH 160 (362)
T ss_pred hhhhhhhh--hhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhh
Confidence 34444444 3457889999999999999999999999999975 357899999999999999866542 2 233
Q ss_pred CCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCC-----CcccceEEEEEEEecccCCcccc
Q 003975 100 SSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKG-----DQTTKGEIMLAVWMGTQADESFA 173 (782)
Q Consensus 100 ~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g-----~~~~~G~l~l~~~~~~~~d~~~~ 173 (782)
...+++.|.|.+.+ .++++|+..+.+..|...... ....|+.-.-+.+ ..+.+|+|.+++.|.++.
T Consensus 161 ~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k---~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~----- 232 (362)
T KOG1013|consen 161 LKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRK---SFNICLEKSLPSERADRDEDEERGAILISLAYSSTT----- 232 (362)
T ss_pred hhhhheeeccCcccccccCcccchhhhhccChhhcc---hhhhhhhccCCcccccccchhhccceeeeeccCcCC-----
Confidence 46688999999998 999999999998888755332 2334443322211 113578888887554321
Q ss_pred ccccCCccccccccccccccccccCCceEEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeeecccCCCCCC
Q 003975 174 EAWHSDAHNISQKNLANTRSKVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLGN-----QLRVTRPSHVRSVNP 248 (782)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~rs~~~~~p~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~~T~~~~~~t~nP 248 (782)
..+.|++..|..|..+|.++-+||||..++.. .+++|.+.++ +.+|
T Consensus 233 ----------------------------~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~-t~~p 283 (362)
T KOG1013|consen 233 ----------------------------PGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKK-TLNP 283 (362)
T ss_pred ----------------------------CceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhc-cCCc
Confidence 23899999999999999999999999999953 3467777776 9999
Q ss_pred cccceeEEEecCC--CCCeEEEEEEEccCCCCCceeEEEEEeCC
Q 003975 249 VWNEEHMFVASEP--FEDLIIVTVEDRIRPGKDEILGRELIPVR 290 (782)
Q Consensus 249 ~wne~f~f~v~~~--~~~~l~i~V~d~~~~~~d~~iG~~~i~l~ 290 (782)
.|++.|.|.+... ....+.|.|||++..+..+++|-+...+.
T Consensus 284 ~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 284 EFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGY 327 (362)
T ss_pred cccccccccCCccchhcceEEEeecccCCCcCccCCCccccccc
Confidence 9999999987533 35589999999998888899987766544
No 183
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.55 E-value=8.9e-14 Score=128.80 Aligned_cols=117 Identities=21% Similarity=0.358 Sum_probs=97.0
Q ss_pred eeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeE-eeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCC-C---
Q 003975 39 MHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYK-GITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDI-G--- 113 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~-~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~-~--- 113 (782)
...|.|.|.+|++|+.++ +|||++.++++. .||+++.++.||.|+|.|.|..... ...|.|.||+.+. .
T Consensus 10 ~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~~~~ 83 (146)
T cd04013 10 ENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKKKKK 83 (146)
T ss_pred EEEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCccccc
Confidence 457999999999999876 899999999976 6999999999999999999976443 4679999976542 2
Q ss_pred -CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCc--------ccceEEEEEEEecc
Q 003975 114 -KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQ--------TTKGEIMLAVWMGT 166 (782)
Q Consensus 114 -~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~--------~~~G~l~l~~~~~~ 166 (782)
++++||.+.|++.++..+. ..++||+|.+..+.. ...+.|++++.|.+
T Consensus 84 ~~~~~IG~V~Ip~~~l~~~~-----~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~ 140 (146)
T cd04013 84 DKSQLIGTVNIPVTDVSSRQ-----FVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS 140 (146)
T ss_pred cCCcEEEEEEEEHHHhcCCC-----cccEEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence 6799999999999998643 478999999877553 24579999998874
No 184
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.55 E-value=3.5e-14 Score=127.26 Aligned_cols=97 Identities=23% Similarity=0.296 Sum_probs=82.5
Q ss_pred CCC-CcEEEEEECCE-EEeecccCCCCCCeeccEEEEEeeCC-CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEccccc
Q 003975 388 KLT-DAYCVAKYGNK-WIRTRTILDTLAPRWNEQYTWDVYDP-CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLE 464 (782)
Q Consensus 388 ~~~-dpyv~v~~~~~-~~rT~~~~~t~~P~wne~~~f~v~~~-~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~ 464 (782)
.|. ||||+|.++++ ..+|++++++.||+|||.|.|.+.++ ...|.|.|||++.+ +|++||++.++|+++.
T Consensus 10 ~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-------~d~~iG~~~v~L~~l~ 82 (111)
T cd04052 10 TGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-------HDPVLGSVSISLNDLI 82 (111)
T ss_pred CCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-------CCCeEEEEEecHHHHH
Confidence 456 99999999885 58999999999999999999999875 56899999999864 6899999999999985
Q ss_pred C-CceEEEEEeeeecCCCCCCcCcEEEEEEEEEE
Q 003975 465 T-DRIYTHYYPLLLLTPSGLKNNGELHLALRFTC 497 (782)
Q Consensus 465 ~-~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~~~ 497 (782)
. +.....||+|.. .+.|+|++++.|.|
T Consensus 83 ~~~~~~~~w~~L~~------~~~G~i~~~~~~~p 110 (111)
T cd04052 83 DATSVGQQWFPLSG------NGQGRIRISALWKP 110 (111)
T ss_pred hhhhccceeEECCC------CCCCEEEEEEEEec
Confidence 4 445689999973 34699999988754
No 185
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.54 E-value=5.5e-14 Score=128.73 Aligned_cols=106 Identities=28% Similarity=0.411 Sum_probs=88.9
Q ss_pred CCCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEE-ec--
Q 003975 25 GGDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFS-KE-- 96 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~-~~-- 96 (782)
|...+++.|+- ..+.|.|+|++|++|+..+..+.+||||++.+.+ .+.+|++++++.||+|||+|.|. +.
T Consensus 2 G~~~~~l~y~~--~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~ 79 (123)
T cd04035 2 GTLEFTLLYDP--ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEE 79 (123)
T ss_pred cEEEEEEEEeC--CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHH
Confidence 34456666665 4578999999999999998889999999999842 46899999999999999999996 32
Q ss_pred cCCCCeEEEEEEeCCCCCCceeEEEEEEccccCCCC
Q 003975 97 RLQSSLLEVTVKDKDIGKDDFVGRVSLDLSQVPLRV 132 (782)
Q Consensus 97 ~~~~~~L~i~V~d~d~~~d~~lG~~~v~l~~l~~~~ 132 (782)
+.....|.|+|||++..++++||++.++++++..+.
T Consensus 80 ~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~ 115 (123)
T cd04035 80 DIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQ 115 (123)
T ss_pred HhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCc
Confidence 234578999999998778899999999999998753
No 186
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.54 E-value=3.8e-14 Score=129.07 Aligned_cols=98 Identities=24% Similarity=0.244 Sum_probs=83.9
Q ss_pred EEEEeeCCCCCCCCCCCCcEEEEEECCe-------EeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCC----C
Q 003975 45 NVVKARNLPVMDVSGSLDPYVEVKLGNY-------KGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDI----G 113 (782)
Q Consensus 45 ~v~~a~~L~~~d~~g~~dPyv~v~~~~~-------~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~----~ 113 (782)
-.++|++|+..+..|.+||||+|++.+. .++|++++++.||+|||+|.|.+.......|.|+|||++. .
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence 3478999999999999999999999764 4899999999999999999998654446789999999996 5
Q ss_pred -CCceeEEEEEEccccCCCCCCCCCCCCEEEEecc
Q 003975 114 -KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLED 147 (782)
Q Consensus 114 -~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~ 147 (782)
++++||++.+++.+|..... ...|++|..
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~~-----~~~~~~l~~ 114 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSPG-----QKLTLPLKG 114 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCCC-----cEEEEEccC
Confidence 99999999999999986532 557888844
No 187
>PLN03008 Phospholipase D delta
Probab=99.53 E-value=5.3e-14 Score=159.37 Aligned_cols=125 Identities=25% Similarity=0.414 Sum_probs=106.3
Q ss_pred eeEEEEEEEEeeCCCCCCC------------------------------------------CCCCCcEEEEEECCe-Eee
Q 003975 39 MHYLCVNVVKARNLPVMDV------------------------------------------SGSLDPYVEVKLGNY-KGI 75 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d~------------------------------------------~g~~dPyv~v~~~~~-~~k 75 (782)
-|.|.++|.+|++|+.+|. .+++||||+|.++++ +.|
T Consensus 13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~R 92 (868)
T PLN03008 13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLAR 92 (868)
T ss_pred ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceee
Confidence 3788999999999986321 247899999999886 569
Q ss_pred eccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCc-cc
Q 003975 76 TKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQ-TT 154 (782)
Q Consensus 76 T~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~-~~ 154 (782)
|++++++.||+|||+|.|.+... ...|.|+|||+|.+++++||++.|+|.++..+.. ...|++|.+..++. ..
T Consensus 93 TrVi~n~~NPvWNE~F~f~vah~-~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~-----vd~Wl~Ll~~~~kp~k~ 166 (868)
T PLN03008 93 TRVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGER-----ISGWFPVLGASGKPPKA 166 (868)
T ss_pred EEeCCCCCCCCcceeEEEEecCC-CceEEEEEEcCCccCCceeEEEEEEHHHcCCCCc-----eEEEEEccccCCCCCCC
Confidence 99999999999999999999875 4689999999999977999999999999987643 67999999987765 34
Q ss_pred ceEEEEEEEecccCC
Q 003975 155 KGEIMLAVWMGTQAD 169 (782)
Q Consensus 155 ~G~l~l~~~~~~~~d 169 (782)
.|+|++++.|.+...
T Consensus 167 ~~kl~v~lqf~pv~~ 181 (868)
T PLN03008 167 ETAIFIDMKFTPFDQ 181 (868)
T ss_pred CcEEEEEEEEEEccc
Confidence 689999999987654
No 188
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.53 E-value=1.2e-13 Score=126.44 Aligned_cols=99 Identities=23% Similarity=0.275 Sum_probs=81.4
Q ss_pred eeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEEC-----CEEEeecccCCCCCCeeccEEEEEeeCC----CceEEEEE
Q 003975 366 IGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYG-----NKWIRTRTILDTLAPRWNEQYTWDVYDP----CTVITIGV 435 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~-----~~~~rT~~~~~t~~P~wne~~~f~v~~~----~~~l~i~v 435 (782)
.+.|+|+|++|+||++.+.. +. ||||++.+. ....||++++++.||.|||.|.|....+ ...|.|+|
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~---~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v 90 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDAN---GLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLV 90 (123)
T ss_pred CCEEEEEEEEeeCCCCCCCC---CCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEE
Confidence 46899999999999987542 56 999999983 2469999999999999999999974432 46899999
Q ss_pred EeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEe
Q 003975 436 FDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYP 474 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~ 474 (782)
||++.+ .+++||.+.++|+++..++....|+.
T Consensus 91 ~d~~~~-------~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 91 LDEDRF-------GNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred EEcCCc-------CCeeEEEEEEEcccCCCCcceEeecc
Confidence 999864 58899999999999988775555543
No 189
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.53 E-value=6.3e-15 Score=151.32 Aligned_cols=104 Identities=24% Similarity=0.440 Sum_probs=92.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeeeecccCCCCCCcccceeEEEecCCC-CCeEEEEEEEccCC
Q 003975 203 YLRVFVFEAQDLVPSDKGRAPDACVRIQLG-----NQLRVTRPSHVRSVNPVWNEEHMFVASEPF-EDLIIVTVEDRIRP 276 (782)
Q Consensus 203 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~-----~~~~~T~~~~~~t~nP~wne~f~f~v~~~~-~~~l~i~V~d~~~~ 276 (782)
.|.|+|.+|+||.++|.+|.+||||++.+- ..+++|++++. ++||+|||+|.|.+.... +..|.|+|||+|+.
T Consensus 181 ~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~-~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrT 259 (683)
T KOG0696|consen 181 VLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKA-TLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRT 259 (683)
T ss_pred eEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhh-hcCccccceeEEecccccccceeEEEEeccccc
Confidence 499999999999999999999999999993 25688999997 999999999999986543 55899999999999
Q ss_pred CCCceeEEEEEeCCCcccccCCCCCCCCceEEccCCC
Q 003975 277 GKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKPS 313 (782)
Q Consensus 277 ~~d~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 313 (782)
++++++|+.++.++++++. ....||.|-...
T Consensus 260 sRNDFMGslSFgisEl~K~------p~~GWyKlLsqe 290 (683)
T KOG0696|consen 260 SRNDFMGSLSFGISELQKA------PVDGWYKLLSQE 290 (683)
T ss_pred ccccccceecccHHHHhhc------chhhHHHHhhhh
Confidence 9999999999999999864 378899886553
No 190
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.52 E-value=1.9e-13 Score=126.15 Aligned_cols=117 Identities=23% Similarity=0.377 Sum_probs=92.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-------------eEeeeecccCCCCCCcc-cceeEEEecCCCCCeEEEE
Q 003975 204 LRVFVFEAQDLVPSDKGRAPDACVRIQLGN-------------QLRVTRPSHVRSVNPVW-NEEHMFVASEPFEDLIIVT 269 (782)
Q Consensus 204 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~-------------~~~~T~~~~~~t~nP~w-ne~f~f~v~~~~~~~l~i~ 269 (782)
..|++++|++|+ .+..|++||||++++.. +.++|+++++ +.||+| ||.|.|.+. ..+.|.|+
T Consensus 3 ~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~-tlnP~W~nE~f~f~v~--~~~~L~v~ 78 (137)
T cd08691 3 FSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVEN-TINPVWHREQFVFVGL--PTDVLEIE 78 (137)
T ss_pred EEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcC-CCCCceEceEEEEEcC--CCCEEEEE
Confidence 678999999998 67789999999999942 4689999986 999999 999999985 35689999
Q ss_pred EEEccCCCC---CceeEEEEEeCCCcccccCCCCCCCCceEEccCCCcccccccccccccccceEEEEE
Q 003975 270 VEDRIRPGK---DEILGRELIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISF 335 (782)
Q Consensus 270 V~d~~~~~~---d~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i 335 (782)
|||++..++ +++||++.++++++... ........||+|+.... ....+|+|.+++
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~--~~~~~~~~~~~l~k~~~---------~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLER--HAIGDQELSYTLGRRTP---------TDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhccc--ccCCceEEEEECCcCCC---------CCcEEEEEEEEe
Confidence 999865433 79999999999999854 23344678999875531 345567776654
No 191
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.52 E-value=2.5e-13 Score=125.41 Aligned_cols=116 Identities=23% Similarity=0.348 Sum_probs=92.9
Q ss_pred EEEEEEEEeecCCCCccCCCCCC-CcEEEEEE------CCEEEeecccCCCC-CCeeccEEEEEeeCCC-ceEEEEEEeC
Q 003975 368 TLELGILSAKNLMQMKSKDGKLT-DAYCVAKY------GNKWIRTRTILDTL-APRWNEQYTWDVYDPC-TVITIGVFDN 438 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~------~~~~~rT~~~~~t~-~P~wne~~~f~v~~~~-~~l~i~v~d~ 438 (782)
.|+|+|++|+||+.++. ...+. ||||++++ +....||+++.++. ||.|||+|.|.+..+. ..|.|+|||+
T Consensus 3 ~l~v~vi~a~~L~~~~~-~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 3 TLTIKIISGQQLPKPKG-DKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred EEEEEEEeeecCCCCCC-CCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 78999999999998752 02355 99999999 34669999988776 9999999999998764 5799999999
Q ss_pred CcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 439 CYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 439 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
+.. +|++||++.++|+++..+ ..|++|...... ....|.|.+.+++
T Consensus 82 ~~~-------~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~-~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSG-------DDDFLGQACLPLDSLRQG---YRHVPLLDSKGE-PLELSTLFVHIDI 127 (128)
T ss_pred CCC-------CCcEeEEEEEEhHHhcCc---eEEEEecCCCCC-CCcceeEEEEEEE
Confidence 853 689999999999999765 368899764332 1335899988875
No 192
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.50 E-value=1.3e-13 Score=126.11 Aligned_cols=89 Identities=25% Similarity=0.422 Sum_probs=81.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeE--eeeecccCCCCCCcccceeEEEecCCCCCeEEEEEEEccCCCCCce
Q 003975 204 LRVFVFEAQDLVPSDKGRAPDACVRIQLGNQL--RVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIRPGKDEI 281 (782)
Q Consensus 204 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~T~~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d~~ 281 (782)
|+|+|++|++|+..+..+.+||||+++++++. .+|+++++ +.||.|||.|.|.+..+....|.|+|||++..+++++
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~-t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPN-TLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEEC-CCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 89999999999999999999999999999865 56777776 9999999999999877777899999999999999999
Q ss_pred eEEEEEeCCCcc
Q 003975 282 LGRELIPVRNVP 293 (782)
Q Consensus 282 iG~~~i~l~~l~ 293 (782)
||++.+++.+..
T Consensus 81 iG~~~i~l~~~~ 92 (124)
T cd04037 81 IGETVIDLEDRF 92 (124)
T ss_pred eEEEEEeecccc
Confidence 999999998765
No 193
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.50 E-value=2.4e-13 Score=119.94 Aligned_cols=86 Identities=27% Similarity=0.502 Sum_probs=66.6
Q ss_pred EEEEEEEeecCCCCccCCCCCCCcEEEEEECC-----EEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCc-CC
Q 003975 369 LELGILSAKNLMQMKSKDGKLTDAYCVAKYGN-----KWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCY-VN 442 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~-----~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~-~~ 442 (782)
|.|+|++|+||+. ..||||++.+++ ..+||+++++|+||+|||.|+|++.. ...|.+.|||++. ..
T Consensus 1 L~V~V~~A~~L~~-------~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~ 72 (118)
T cd08686 1 LNVIVHSAQGFKQ-------SANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKV 72 (118)
T ss_pred CEEEEEeCCCCCC-------CCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEcccccc
Confidence 5799999999962 249999999853 46999999999999999999999974 6799999999831 00
Q ss_pred CCCCCCCCCccEEEEEEccc
Q 003975 443 GSKDDAKDQRIGKVRIRLST 462 (782)
Q Consensus 443 ~~~~~~~d~~lG~~~i~l~~ 462 (782)
..+..++|+++|++.|.|..
T Consensus 73 ~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 73 KLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred cccccCcccEEEEEEEEECH
Confidence 00112389999877776644
No 194
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.50 E-value=5.8e-14 Score=173.63 Aligned_cols=117 Identities=23% Similarity=0.428 Sum_probs=99.6
Q ss_pred CceeEEEEEEEEeecCCCCccCCCCCCCcEEEEEECCE-EEeecccCCCCCCeeccEEEEEeeCCC--ceEEEEEEeCCc
Q 003975 364 GSIGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNK-WIRTRTILDTLAPRWNEQYTWDVYDPC--TVITIGVFDNCY 440 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~~-~~rT~~~~~t~~P~wne~~~f~v~~~~--~~l~i~v~d~~~ 440 (782)
...|.|.|+|++|+||. + +.+.+||||++.+|++ +.||++++++.||+|||.|+|.+.+|. ..|+|+|||+|.
T Consensus 1977 ~~~G~L~V~V~~a~nl~--~--~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~ 2052 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLK--Q--SMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT 2052 (2102)
T ss_pred hCCcceEEEEeeccccc--c--ccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc
Confidence 44899999999999998 2 2223499999999955 889999999999999999999998874 689999999998
Q ss_pred CCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcE---EEEEEEE
Q 003975 441 VNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGE---LHLALRF 495 (782)
Q Consensus 441 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~---i~l~~~~ 495 (782)
++ ++.+|.+.|+|.++..++.++.||+|.. ..+|.|+ |++++++
T Consensus 2053 f~-------kd~~G~~~i~l~~vv~~~~~~~~~~L~~----~~~k~G~~~~~~~e~~w 2099 (2102)
T PLN03200 2053 FG-------KSSLGKVTIQIDRVVMEGTYSGEYSLNP----ESNKDGSSRTLEIEFQW 2099 (2102)
T ss_pred cC-------CCCCceEEEEHHHHhcCceeeeeeecCc----ccccCCCcceEEEEEEe
Confidence 74 5599999999999999999999999984 2245687 8887654
No 195
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.50 E-value=1.2e-13 Score=125.79 Aligned_cols=97 Identities=20% Similarity=0.226 Sum_probs=82.9
Q ss_pred EEEEeecCCCCccCCCCCC-CcEEEEEECCE-------EEeecccCCCCCCeeccEEEEEeeC-CCceEEEEEEeCCc--
Q 003975 372 GILSAKNLMQMKSKDGKLT-DAYCVAKYGNK-------WIRTRTILDTLAPRWNEQYTWDVYD-PCTVITIGVFDNCY-- 440 (782)
Q Consensus 372 ~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~-------~~rT~~~~~t~~P~wne~~~f~v~~-~~~~l~i~v~d~~~-- 440 (782)
..++|++|+..+.. |. ||||+|++.+. ..||++++++.||+|||.|.|.+.. ....|.|+|||++.
T Consensus 5 ~~i~a~~L~~~d~~---g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~ 81 (120)
T cd04048 5 LSISCRNLLDKDVL---SKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKS 81 (120)
T ss_pred EEEEccCCCCCCCC---CCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCc
Confidence 44799999988643 56 99999999553 4999999999999999999998753 45689999999996
Q ss_pred --CCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeee
Q 003975 441 --VNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLL 477 (782)
Q Consensus 441 --~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 477 (782)
++ +|++||++.++++++..+.....|++|..
T Consensus 82 ~~~~------~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 82 KDLS------DHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred CCCC------CCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 54 89999999999999998877788999953
No 196
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.49 E-value=1.7e-13 Score=120.86 Aligned_cols=79 Identities=25% Similarity=0.380 Sum_probs=68.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeC------
Q 003975 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDK------ 110 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~------ 110 (782)
|.|+|++|+||+ +.+||||++.+++ .+.+|+++++|+||+|||+|.|.+.. ...|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEccccccc
Confidence 579999999996 5589999999963 35899999999999999999999974 67999999998
Q ss_pred -CCC-CCceeEEEEEEccc
Q 003975 111 -DIG-KDDFVGRVSLDLSQ 127 (782)
Q Consensus 111 -d~~-~d~~lG~~~v~l~~ 127 (782)
|.. +|+++|.+.+.|..
T Consensus 74 ~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred ccccCcccEEEEEEEEECH
Confidence 344 89999888887653
No 197
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.45 E-value=2.1e-13 Score=168.80 Aligned_cols=121 Identities=20% Similarity=0.341 Sum_probs=101.8
Q ss_pred cccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-EeeeccccCCCCCccccEEEEEeccCC-CCeEEEEEEeCCC
Q 003975 35 LVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNY-KGITKHLEKNQNPVWNQIFAFSKERLQ-SSLLEVTVKDKDI 112 (782)
Q Consensus 35 ~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~kT~~i~~t~nP~Wne~f~f~~~~~~-~~~L~i~V~d~d~ 112 (782)
+...+|.|.|+|++|+||. +..|.+||||++++|++ +.||++++++.||+|||+|.|.++++. .++|+|+|||+|.
T Consensus 1975 ~~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~ 2052 (2102)
T PLN03200 1975 LQCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT 2052 (2102)
T ss_pred HhhCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc
Confidence 3456799999999999998 44789999999999965 889999999999999999999998754 4679999999999
Q ss_pred CCCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceE---EEEEEEec
Q 003975 113 GKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGE---IMLAVWMG 165 (782)
Q Consensus 113 ~~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~---l~l~~~~~ 165 (782)
++++.||.++|++.++..+.. ...||+|.+.+.+ .|. |.+.+.|.
T Consensus 2053 f~kd~~G~~~i~l~~vv~~~~-----~~~~~~L~~~~~k---~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2053 FGKSSLGKVTIQIDRVVMEGT-----YSGEYSLNPESNK---DGSSRTLEIEFQWS 2100 (2102)
T ss_pred cCCCCCceEEEEHHHHhcCce-----eeeeeecCccccc---CCCcceEEEEEEec
Confidence 966699999999999997643 6789999964322 466 88887654
No 198
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.44 E-value=5.1e-13 Score=119.68 Aligned_cols=87 Identities=23% Similarity=0.377 Sum_probs=75.5
Q ss_pred EEEEEeeCCCCCCCCCCCCcEEEEEECCe------EeeeccccCCCCCccccEEEEEeccCC----CCeEEEEEEeCCCC
Q 003975 44 VNVVKARNLPVMDVSGSLDPYVEVKLGNY------KGITKHLEKNQNPVWNQIFAFSKERLQ----SSLLEVTVKDKDIG 113 (782)
Q Consensus 44 V~v~~a~~L~~~d~~g~~dPyv~v~~~~~------~~kT~~i~~t~nP~Wne~f~f~~~~~~----~~~L~i~V~d~d~~ 113 (782)
+-.++|++|+..|..|.+||||+|++.+. .++|++++++.||+|| +|.|....+. ...|.|+|||++..
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 45569999999999999999999998643 5899999999999999 7888865332 57899999999998
Q ss_pred -CCceeEEEEEEccccCCC
Q 003975 114 -KDDFVGRVSLDLSQVPLR 131 (782)
Q Consensus 114 -~d~~lG~~~v~l~~l~~~ 131 (782)
+|++||++.+++.++...
T Consensus 83 ~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 83 GKHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCCcEEEEEEEEHHHHhcC
Confidence 999999999999999854
No 199
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=2.1e-13 Score=145.59 Aligned_cols=119 Identities=29% Similarity=0.519 Sum_probs=104.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCC-------
Q 003975 40 HYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDI------- 112 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~------- 112 (782)
..+.++|++|.+|.++|..|++||||.+.+|..+.+|++|.+.+||+|||.|.|...+. ...+.+.|||.|.
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechns-tdrikvrvwded~dlksklr 373 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNS-TDRIKVRVWDEDNDLKSKLR 373 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCC-CceeEEEEecCcccHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999874 7889999999884
Q ss_pred --C---CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEecc
Q 003975 113 --G---KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGT 166 (782)
Q Consensus 113 --~---~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~ 166 (782)
. +|+|+|+..|.+..|-.. .+.||.|+....++.+.|-|.+.+...-
T Consensus 374 qkl~resddflgqtvievrtlsge-------mdvwynlekrtdksavsgairlhisvei 425 (1283)
T KOG1011|consen 374 QKLTRESDDFLGQTVIEVRTLSGE-------MDVWYNLEKRTDKSAVSGAIRLHISVEI 425 (1283)
T ss_pred HHhhhcccccccceeEEEEecccc-------hhhhcchhhccchhhccceEEEEEEEEE
Confidence 1 799999999999888643 6789999998777777888877766543
No 200
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=1.3e-13 Score=137.90 Aligned_cols=219 Identities=19% Similarity=0.251 Sum_probs=163.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeeecccCCCCCCcccceeEEEe--cCC-CCCeEEEEEEEcc
Q 003975 203 YLRVFVFEAQDLVPSDKGRAPDACVRIQLGN-----QLRVTRPSHVRSVNPVWNEEHMFVA--SEP-FEDLIIVTVEDRI 274 (782)
Q Consensus 203 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~~T~~~~~~t~nP~wne~f~f~v--~~~-~~~~l~i~V~d~~ 274 (782)
.+..++..|++|.+++.++..|||++..++. .+.+|++..+ +.||.|+|+..+.. .+. ....+++.|.|.+
T Consensus 94 ~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n-~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~ 172 (362)
T KOG1013|consen 94 MLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRN-TLNPEWNETEVYEGITDDDTHLKVLRKVVCDND 172 (362)
T ss_pred hcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhcc-CcCcceeccceecccccchhhhhhhheeeccCc
Confidence 4889999999999999999999999999964 3477888876 99999999865542 222 2447888999999
Q ss_pred CCCCCceeEEEEEeCCCcccccCCCCCCCCceEEccCCCcccccccccccccccceEEEEEEeccCccccCCCcccCCCC
Q 003975 275 RPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCLEAGYHVFDESTHFSSDL 354 (782)
Q Consensus 275 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~~~~~~~~d~~~~~~~d~ 354 (782)
.....+++|+..+++..+..++ ......|+.-..+.. .......+..|.+.+++.++
T Consensus 173 ~~~~~~sqGq~r~~lkKl~p~q---~k~f~~cl~~~lp~~----rad~~~~E~rg~i~isl~~~---------------- 229 (362)
T KOG1013|consen 173 KKTHNESQGQSRVSLKKLKPLQ---RKSFNICLEKSLPSE----RADRDEDEERGAILISLAYS---------------- 229 (362)
T ss_pred ccccccCcccchhhhhccChhh---cchhhhhhhccCCcc----cccccchhhccceeeeeccC----------------
Confidence 9889999999999988887543 233455554433311 11111235668887777542
Q ss_pred CccccccccCceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC-----EEEeecccCCCCCCeeccEEEEEeeCC-
Q 003975 355 QTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLAPRWNEQYTWDVYDP- 427 (782)
Q Consensus 355 ~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~~~rT~~~~~t~~P~wne~~~f~v~~~- 427 (782)
....-+.|++++|..|..+|+. |- ||||..++.. -+.+|.+.++|.+|.||+.|.|.+...
T Consensus 230 ---------s~~~~l~vt~iRc~~l~ssDsn---g~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgd 297 (362)
T KOG1013|consen 230 ---------STTPGLIVTIIRCSHLASSDSN---GYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGD 297 (362)
T ss_pred ---------cCCCceEEEEEEeeeeeccccC---CCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccc
Confidence 2235788999999999998764 55 9999999843 248899999999999999999998753
Q ss_pred --CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccc
Q 003975 428 --CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTL 463 (782)
Q Consensus 428 --~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l 463 (782)
...+.|.|||.+.-+ ..+++|-+...+...
T Consensus 298 La~~kv~lsvgd~~~G~------s~d~~GG~~~g~~rr 329 (362)
T KOG1013|consen 298 LAYKKVALSVGDYDIGK------SNDSIGGSMLGGYRR 329 (362)
T ss_pred hhcceEEEeecccCCCc------CccCCCccccccccc
Confidence 458999999998633 678888877655443
No 201
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.38 E-value=1.5e-12 Score=110.40 Aligned_cols=81 Identities=41% Similarity=0.595 Sum_probs=74.2
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCce
Q 003975 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGN---YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDDF 117 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~~ 117 (782)
|.|+|++|++|+..+..+.+||||++++++ ...+|+++.++.||.|||+|.|.+.......|.|+|||++.. +|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 789999999999988889999999999987 679999999999999999999998765566799999999998 7999
Q ss_pred eEEEE
Q 003975 118 VGRVS 122 (782)
Q Consensus 118 lG~~~ 122 (782)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99984
No 202
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.37 E-value=2.7e-12 Score=114.98 Aligned_cols=87 Identities=24% Similarity=0.225 Sum_probs=72.3
Q ss_pred EEEEEeecCCCCccCCCCCC-CcEEEEEECC------EEEeecccCCCCCCeeccEEEEEeeC-----CCceEEEEEEeC
Q 003975 371 LGILSAKNLMQMKSKDGKLT-DAYCVAKYGN------KWIRTRTILDTLAPRWNEQYTWDVYD-----PCTVITIGVFDN 438 (782)
Q Consensus 371 v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~------~~~rT~~~~~t~~P~wne~~~f~v~~-----~~~~l~i~v~d~ 438 (782)
+..++|++|+.++.. +. ||||++++.+ ..++|++++++.||+|| .|.|++.. +...|.|+|||+
T Consensus 4 ~~~i~a~~L~~~d~~---~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~ 79 (110)
T cd04047 4 ELQFSGKKLDKKDFF---GKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDY 79 (110)
T ss_pred EEEEEeCCCCCCCCC---CCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEe
Confidence 345699999988653 56 9999999854 25999999999999999 78887642 256999999999
Q ss_pred CcCCCCCCCCCCCccEEEEEEcccccCCc
Q 003975 439 CYVNGSKDDAKDQRIGKVRIRLSTLETDR 467 (782)
Q Consensus 439 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 467 (782)
+.++ +|++||++.++++++..++
T Consensus 80 d~~~------~d~~iG~~~~~l~~l~~~~ 102 (110)
T cd04047 80 DSSG------KHDLIGEFETTLDELLKSS 102 (110)
T ss_pred CCCC------CCcEEEEEEEEHHHHhcCC
Confidence 9876 8999999999999998544
No 203
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.28 E-value=1.4e-11 Score=104.46 Aligned_cols=82 Identities=33% Similarity=0.481 Sum_probs=75.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEeeeecccCCCCCCcccceeEEEecCCCCCeEEEEEEEccCCCCCc
Q 003975 204 LRVFVFEAQDLVPSDKGRAPDACVRIQLGN---QLRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIRPGKDE 280 (782)
Q Consensus 204 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~---~~~~T~~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d~ 280 (782)
|+|+|++|++|+..+..+.+||||++++++ ..++|+++++ +.+|.|+|.|.|.+..+..+.|.|+|||++..++++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~ 79 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKN-TSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDE 79 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSS-BSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeec-cccceeeeeeeeeeecccccceEEEEEECCCCCCCC
Confidence 689999999999988888999999999987 6799999987 899999999999987777778999999999998899
Q ss_pred eeEEEE
Q 003975 281 ILGREL 286 (782)
Q Consensus 281 ~iG~~~ 286 (782)
+||++.
T Consensus 80 ~iG~~~ 85 (85)
T PF00168_consen 80 LIGEVK 85 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999974
No 204
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=6.9e-12 Score=134.25 Aligned_cols=123 Identities=25% Similarity=0.401 Sum_probs=100.6
Q ss_pred eeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCCC
Q 003975 366 IGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGS 444 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~ 444 (782)
...++++|+.|+||.+.|.. |+ ||||.+.+|..+.||+++...+||+|||.|.|++.+..+.|.+.|||+|.-- +
T Consensus 294 sakitltvlcaqgl~akdkt---g~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dl-k 369 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAKDKT---GKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDL-K 369 (1283)
T ss_pred ceeeEEeeeecccceecccC---CCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccH-H
Confidence 45899999999999988643 77 9999999999999999999999999999999999998899999999987421 0
Q ss_pred CC------CCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 445 KD------DAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 445 ~~------~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
.+ ..+|+|||+..|.+..|...- +-||+|+..+.+.. ..|.|+|.|..
T Consensus 370 sklrqkl~resddflgqtvievrtlsgem--dvwynlekrtdksa-vsgairlhisv 423 (1283)
T KOG1011|consen 370 SKLRQKLTRESDDFLGQTVIEVRTLSGEM--DVWYNLEKRTDKSA-VSGAIRLHISV 423 (1283)
T ss_pred HHHHHHhhhcccccccceeEEEEecccch--hhhcchhhccchhh-ccceEEEEEEE
Confidence 00 468999999999999986543 78999987554322 24766666554
No 205
>PLN02270 phospholipase D alpha
Probab=99.24 E-value=6.3e-11 Score=134.87 Aligned_cols=126 Identities=20% Similarity=0.261 Sum_probs=105.5
Q ss_pred eEEEEEEEEeecCCCCcc---------------CCCCCC-CcEEEEEECCE-EEeecccCCC-CCCeeccEEEEEeeCCC
Q 003975 367 GTLELGILSAKNLMQMKS---------------KDGKLT-DAYCVAKYGNK-WIRTRTILDT-LAPRWNEQYTWDVYDPC 428 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~---------------~~~~~~-dpyv~v~~~~~-~~rT~~~~~t-~~P~wne~~~f~v~~~~ 428 (782)
|.|.++|++|++|++++. ..++++ ||||.|.+++. ..||+++.+. .||+|||.|..++..+.
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~~ 87 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHMA 87 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccCc
Confidence 899999999999987421 012345 99999999875 5799999885 69999999999999998
Q ss_pred ceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEEEEcc
Q 003975 429 TVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRFTCTA 499 (782)
Q Consensus 429 ~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~~~~~ 499 (782)
..+.|.|.|.+.+| ..+||++.||+.+|..+..+++|+++.....+-.+...+|+++++|.+..
T Consensus 88 ~~v~f~vkd~~~~g-------~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~ 151 (808)
T PLN02270 88 SNIIFTVKDDNPIG-------ATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVT 151 (808)
T ss_pred ceEEEEEecCCccC-------ceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEcc
Confidence 99999999999885 56999999999999999999999999975543333345899999998744
No 206
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.24 E-value=4.2e-11 Score=108.92 Aligned_cols=94 Identities=17% Similarity=0.242 Sum_probs=77.8
Q ss_pred EEEEEEEEeecCCCCccCC-CCCC-CcEEEEEECC---EEEeecccCCCCC--CeeccEEEEEeeCC-------------
Q 003975 368 TLELGILSAKNLMQMKSKD-GKLT-DAYCVAKYGN---KWIRTRTILDTLA--PRWNEQYTWDVYDP------------- 427 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~-~~~~-dpyv~v~~~~---~~~rT~~~~~t~~--P~wne~~~f~v~~~------------- 427 (782)
.|+|.|++|+|++..+... |... ||||++.+.+ ++.+|.++++++| |+||+.|.|++..+
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH 80 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence 3799999999977654422 2223 9999999954 5799999999999 99999999987641
Q ss_pred -----------CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCc
Q 003975 428 -----------CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDR 467 (782)
Q Consensus 428 -----------~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 467 (782)
...|.|+|||+|.++ +|++||.+.++|+.+..+.
T Consensus 81 ~~~~~~~e~~~~~~L~lqvwD~D~~s------~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 81 FWSLDETEYKIPPKLTLQVWDNDKFS------PDDFLGSLELDLSILPRPA 125 (133)
T ss_pred ccccCcceEecCcEEEEEEEECcccC------CCCcceEEEEEhhhccccc
Confidence 248999999999887 8999999999999997764
No 207
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.20 E-value=1.6e-10 Score=100.85 Aligned_cols=99 Identities=44% Similarity=0.648 Sum_probs=86.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCceeE
Q 003975 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGN-YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDDFVG 119 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~~lG 119 (782)
|.|+|++|++|......+.++|||.+.+.+ ..++|+++.++.||.|||.|.|.+.......|.|+||+.+.. .+.+||
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 478999999998877778899999999998 889999999999999999999999774578899999999987 799999
Q ss_pred EEEEEccccC-CCCCCCCCCCCEEEEe
Q 003975 120 RVSLDLSQVP-LRVPPDSPLAPQWYRL 145 (782)
Q Consensus 120 ~~~v~l~~l~-~~~~~~~~~~~~w~~L 145 (782)
.+.+++.++. ... ...+|++|
T Consensus 81 ~~~~~l~~l~~~~~-----~~~~~~~l 102 (102)
T cd00030 81 EVEIPLSELLDSGK-----EGELWLPL 102 (102)
T ss_pred EEEEeHHHhhhcCC-----cCcceecC
Confidence 9999999998 322 35677765
No 208
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.19 E-value=1.2e-10 Score=101.64 Aligned_cols=98 Identities=30% Similarity=0.512 Sum_probs=84.3
Q ss_pred EEEEEEEeecCCCCccCCCCCC-CcEEEEEECC-EEEeecccCCCCCCeeccEEEEEeeC-CCceEEEEEEeCCcCCCCC
Q 003975 369 LELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN-KWIRTRTILDTLAPRWNEQYTWDVYD-PCTVITIGVFDNCYVNGSK 445 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-~~~rT~~~~~t~~P~wne~~~f~v~~-~~~~l~i~v~d~~~~~~~~ 445 (782)
|.|.|++|++|..... .+. ||||++.+.+ ..++|+++.++.||.||+.|.|++.. ....|.|+|||.+..+
T Consensus 1 l~v~i~~~~~l~~~~~---~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~--- 74 (102)
T cd00030 1 LRVTVIEARNLPAKDL---NGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFS--- 74 (102)
T ss_pred CEEEEEeeeCCCCcCC---CCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCC---
Confidence 4689999999987532 245 9999999988 88999999999999999999999987 5689999999998654
Q ss_pred CCCCCCccEEEEEEccccc-CCceEEEEEee
Q 003975 446 DDAKDQRIGKVRIRLSTLE-TDRIYTHYYPL 475 (782)
Q Consensus 446 ~~~~d~~lG~~~i~l~~l~-~~~~~~~w~~L 475 (782)
.+.+||++.+++.++. .......|++|
T Consensus 75 ---~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 75 ---KDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred ---CCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 6899999999999998 66666778765
No 209
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.16 E-value=1.9e-10 Score=100.48 Aligned_cols=91 Identities=32% Similarity=0.486 Sum_probs=78.9
Q ss_pred EEEEEEEeecCCCCccCCCCCC-CcEEEEEECCE---EEeecccCCCCCCeeccEEEEEeeCC-CceEEEEEEeCCcCCC
Q 003975 369 LELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNK---WIRTRTILDTLAPRWNEQYTWDVYDP-CTVITIGVFDNCYVNG 443 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~---~~rT~~~~~t~~P~wne~~~f~v~~~-~~~l~i~v~d~~~~~~ 443 (782)
+.+.|++|+||...... +. +|||++++.+. ..+|+++.++.||.|||.|.|++..+ ...|.|+|||.+..+
T Consensus 2 l~i~i~~~~~l~~~~~~---~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~- 77 (101)
T smart00239 2 LTVKIISARNLPKKDKK---GKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFG- 77 (101)
T ss_pred eEEEEEEeeCCCCCCCC---CCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCcc-
Confidence 67899999999875421 34 99999999764 89999999999999999999999887 789999999998654
Q ss_pred CCCCCCCCccEEEEEEcccccCCce
Q 003975 444 SKDDAKDQRIGKVRIRLSTLETDRI 468 (782)
Q Consensus 444 ~~~~~~d~~lG~~~i~l~~l~~~~~ 468 (782)
.+.+||.+.+++.++..+..
T Consensus 78 -----~~~~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 78 -----RDDFIGQVTIPLSDLLLGGR 97 (101)
T ss_pred -----CCceeEEEEEEHHHcccCcc
Confidence 68999999999999977653
No 210
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.16 E-value=2.8e-10 Score=99.51 Aligned_cols=91 Identities=43% Similarity=0.654 Sum_probs=81.7
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCe---EeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCce
Q 003975 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNY---KGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDDF 117 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~---~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~~ 117 (782)
|.|+|++|++|......+..+|||++++.+. ..+|+++.++.||.|||+|.|.+.......|.|+|||.+.. .+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 6899999999998876678999999999875 79999999999999999999999876578999999999987 7999
Q ss_pred eEEEEEEccccCCCC
Q 003975 118 VGRVSLDLSQVPLRV 132 (782)
Q Consensus 118 lG~~~v~l~~l~~~~ 132 (782)
+|.+.+++.++..+.
T Consensus 82 ~G~~~~~l~~~~~~~ 96 (101)
T smart00239 82 IGQVTIPLSDLLLGG 96 (101)
T ss_pred eEEEEEEHHHcccCc
Confidence 999999999997653
No 211
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=99.15 E-value=2.4e-10 Score=124.76 Aligned_cols=175 Identities=23% Similarity=0.334 Sum_probs=117.9
Q ss_pred eeehhhchhhHHHHHHHHH---HHH---HHhhccccccCchhhHHHHHHHHHHHHccch--h-HHHHHHHHHHHHHhhcc
Q 003975 563 MWSLRKCKANFQRIVELLS---AIC---RWFNDICTWRNPVETALLHVLFLTLVFYPEL--I-LPTIFLYLFLIGMWNYR 633 (782)
Q Consensus 563 ~~s~~~~~~n~~rl~~~~~---~~~---~~~~~~~~W~~p~~t~~~~~~~~~~~~~~~l--~-~p~~~l~l~~~~~~~~~ 633 (782)
.+|+..+..|+.|+...+. .++ +.+.++++|++|..|..++++|+++|++|.+ + +|++++ ++++++..|.
T Consensus 2 ~lS~~ll~~n~~~l~~~l~~~f~~~~~~d~vl~il~W~~p~~t~~~L~l~t~~~l~p~l~l~~lp~~~l-l~~il~~~yl 80 (359)
T PF06398_consen 2 PLSSPLLSSNFPRLSSRLGPIFPFQLILDRVLRILTWTNPDYTLSFLLLYTFLCLNPYLLLLSLPLGLL-LFGILLPSYL 80 (359)
T ss_pred CcChHHHHhChHHHHHHHHHhhHHHHHHHHHHHeEEeCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4677888999999988887 666 9999999999999999999999999999988 3 454444 4445555666
Q ss_pred cCCCCCCCCCcccchhhhcchhhhhcccCCCcccccccCCCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhhHHHHHHh
Q 003975 634 LRPRHPPHVDAKLSQAINAHLDELVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTMVGDLASQVERAQA 713 (782)
Q Consensus 634 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~vq~~l~~~a~~~e~~~n 713 (782)
.++..+.. .+.. + ..+.+.+.+..|+ +...-..+...++.+||.|+.+.+.++.+..
T Consensus 81 ~~~p~~~~---~~~~----------~----~~~~~~~~~~~pt------l~~~s~e~~~nL~dlQn~m~~~~~~~d~~~~ 137 (359)
T PF06398_consen 81 YRHPSPTS---SLPK----------S----YEDHNPEPSEGPT------LDKPSREIVMNLRDLQNKMEDLSDPYDFLSS 137 (359)
T ss_pred eecCCCcc---cccc----------c----ccccCCCcCCCCC------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55411100 0000 0 0000111111122 1100223334555689999998888888875
Q ss_pred ----cccccChhhHHHHHHHHHHHHHHH----hhchhhhhhheeeee-cccCCCCCC
Q 003975 714 ----ILCWRDLRATFIFLIFSFIWAVFS----YVTPFEVVAVLIGLY-MLRHPRFRS 761 (782)
Q Consensus 714 ----~~~w~~p~~s~~~~~~l~~~~~~~----~~vP~r~i~l~~g~~-~~r~P~~~~ 761 (782)
.++|+++..|.+++.+|+++.+.+ ++||+|++++++|.. ++.||..+.
T Consensus 138 ~~~~~~~f~~e~~s~~~f~~l~~~~~~~~l~~~~ip~r~~ll~~g~~~l~~Hp~~~~ 194 (359)
T PF06398_consen 138 FLYPYLNFSDENLSSLIFLLLLLSPILLLLLSPFIPWRFVLLVSGAFVLLYHPPWRQ 194 (359)
T ss_pred hhcccccCCccchHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCcHHH
Confidence 457999999998887777666654 468999999999933 677998764
No 212
>PLN02223 phosphoinositide phospholipase C
Probab=99.15 E-value=4e-10 Score=123.54 Aligned_cols=117 Identities=19% Similarity=0.263 Sum_probs=95.1
Q ss_pred eEEEEEEEEeeCCCCC-----CCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEe
Q 003975 40 HYLCVNVVKARNLPVM-----DVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKD 109 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~-----d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d 109 (782)
..|.|+|+.|.+++.. +....+||||+|.+.| .+++|++..++.||+|||+|.|.+..++-..|+|+|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 5799999999987511 2235679999999966 35678887788999999999999988777889999999
Q ss_pred CCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEe
Q 003975 110 KDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWM 164 (782)
Q Consensus 110 ~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~ 164 (782)
+|.. +|+|+|++.+++..|..+- ++.+|.+..|.......|.+.+.+
T Consensus 489 ~D~~~~ddfiGQ~~LPv~~Lr~Gy--------R~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 489 YEVSTADAFCGQTCLPVSELIEGI--------RAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred cCCCCCCcEEEEEecchHHhcCCc--------eeEeccCCCcCCCCCceEEEEEEe
Confidence 9987 8999999999999998763 567999988876445567666644
No 213
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.11 E-value=3.6e-10 Score=102.85 Aligned_cols=91 Identities=31% Similarity=0.322 Sum_probs=77.8
Q ss_pred EEEEEEEeeCCCCCC--CCC--CCCcEEEEEECC---eEeeeccccCCCC--CccccEEEEEecc---------------
Q 003975 42 LCVNVVKARNLPVMD--VSG--SLDPYVEVKLGN---YKGITKHLEKNQN--PVWNQIFAFSKER--------------- 97 (782)
Q Consensus 42 L~V~v~~a~~L~~~d--~~g--~~dPyv~v~~~~---~~~kT~~i~~t~n--P~Wne~f~f~~~~--------------- 97 (782)
|+|.|.+|++++..+ ..| .+||||++.+.+ .+++|.+.++++| |.||+.|.|++.-
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 799999999976543 356 499999999975 4689999999999 9999999988643
Q ss_pred --------CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCC
Q 003975 98 --------LQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRV 132 (782)
Q Consensus 98 --------~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~ 132 (782)
.....|.++|||.|.+ +|++||++.++|..+....
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 2357899999999999 9999999999999998753
No 214
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.09 E-value=2.8e-10 Score=128.77 Aligned_cols=257 Identities=22% Similarity=0.275 Sum_probs=163.0
Q ss_pred cceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeE--eeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-
Q 003975 37 ELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYK--GITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG- 113 (782)
Q Consensus 37 ~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~--~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~- 113 (782)
+....++|.|++|-+|.+.|.+|.+|||+++.+|++. -++..+.+|+||+|++-|.+...-+....|.+.|||+|..
T Consensus 610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~ 689 (1105)
T KOG1326|consen 610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEA 689 (1105)
T ss_pred cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccc
Confidence 4445678999999999999999999999999999865 6889999999999999999988877778899999999999
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCC-------------------CCc--ccceEEEEEEEecccCCcc-
Q 003975 114 KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKK-------------------GDQ--TTKGEIMLAVWMGTQADES- 171 (782)
Q Consensus 114 ~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~-------------------g~~--~~~G~l~l~~~~~~~~d~~- 171 (782)
+|+.||+..++|..-............+.|.....+ +.. ...++. ..+.|....+..
T Consensus 690 ~d~~iget~iDLEnR~~T~~~a~cglaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i~~P~~~~e~-~~i~~~g~~~~~d 768 (1105)
T KOG1326|consen 690 QDEKIGETTIDLENRWLTRHRARCGLAQTYCVSGANIWRDRMDPSQILKEHCQPGGIPRPYYSYEV-SAIKWKGESDIYD 768 (1105)
T ss_pred ccchhhceehhhhhcccCcCCcccCccceeeeeccccccCccCHHHHHHHhhcccCCCCCeecCCc-ceEEecChhhhhc
Confidence 899999999998865432221122233333332221 110 011111 122332211100
Q ss_pred -----------ccccc----------------cCCcccccc---ccccccc-----------------cccccCCceEEE
Q 003975 172 -----------FAEAW----------------HSDAHNISQ---KNLANTR-----------------SKVYFSPKLYYL 204 (782)
Q Consensus 172 -----------~~~~~----------------~~~~~~~~~---~~~~~~r-----------------s~~~~~p~~~~L 204 (782)
....| |........ .+..+.+ ......|...-+
T Consensus 769 ~~~~k~~~~~~L~~~~~r~~~~i~~~~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itpr~~~~~~l 848 (1105)
T KOG1326|consen 769 EKEAKTIEVPHLGNAWERLALWILMNQGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPLNITPRKPKKYEL 848 (1105)
T ss_pred ccccCCCCCcccchHHHHHHHHhhhhcCcCCcccccccccCccccchhhcccchhhhhcccccCCCCCCCCCCChhheeE
Confidence 00000 000000000 0000000 001134566789
Q ss_pred EEEEEEeecCCCCCCCC----CCCcEEEEEECC---eEeeeecccC---CCCCCcccceeEEEecC--------------
Q 003975 205 RVFVFEAQDLVPSDKGR----APDACVRIQLGN---QLRVTRPSHV---RSVNPVWNEEHMFVASE-------------- 260 (782)
Q Consensus 205 ~V~V~~a~~L~~~~~~~----~~dpyv~v~l~~---~~~~T~~~~~---~t~nP~wne~f~f~v~~-------------- 260 (782)
+|.|..-.+....+.++ .+|-||+--+-+ ++++|.+.++ +-.|-.|.-.|.|....
T Consensus 849 rviiWnt~~v~l~dd~~~ge~~sdIyv~gw~~gdee~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~kke~~w 928 (1105)
T KOG1326|consen 849 RVIIWNTDKVRLNDDEITGEKMSDIYVKGWVLGDEEEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAKKEYSW 928 (1105)
T ss_pred EEEEeeccceeecCccceeeeccceEEecccccchhhhcccceeeeeccCCcccceeeecccccchHhhHhhhhhhhhcc
Confidence 99998887776665432 689999887753 3455555442 23455565555443210
Q ss_pred -------CCCCeEEEEEEEccCCCCCceeEEEEEeCCCccc
Q 003975 261 -------PFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQ 294 (782)
Q Consensus 261 -------~~~~~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~ 294 (782)
..-..|.|+|||.|.+++|+++|..+++|+++..
T Consensus 929 s~dete~k~p~rl~iqiWD~d~fs~Dd~Lg~lELdL~~~~~ 969 (1105)
T KOG1326|consen 929 SLDETEFKIPARLIIQIWDNDKFSKDDFLGALELDLSDMPA 969 (1105)
T ss_pred ccccccccCchheEEEecccCccChhhhhhheeechhhCcC
Confidence 0122799999999999999999999999999874
No 215
>PLN02270 phospholipase D alpha
Probab=99.06 E-value=1.6e-09 Score=123.70 Aligned_cols=123 Identities=18% Similarity=0.275 Sum_probs=103.7
Q ss_pred eEEEEEEEEeeCCCCCC------------------CCCCCCcEEEEEECCe-EeeeccccCC-CCCccccEEEEEeccCC
Q 003975 40 HYLCVNVVKARNLPVMD------------------VSGSLDPYVEVKLGNY-KGITKHLEKN-QNPVWNQIFAFSKERLQ 99 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d------------------~~g~~dPyv~v~~~~~-~~kT~~i~~t-~nP~Wne~f~f~~~~~~ 99 (782)
|.|.|+|.+|++|++.+ ..+++||||.|.+++. ..||+++.+. .||.|||.|.+.+...
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~- 86 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM- 86 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC-
Confidence 78999999999998632 1367899999999984 6899999885 5999999999999764
Q ss_pred CCeEEEEEEeCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcc-cceEEEEEEEecccC
Q 003975 100 SSLLEVTVKDKDIGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQT-TKGEIMLAVWMGTQA 168 (782)
Q Consensus 100 ~~~L~i~V~d~d~~~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~-~~G~l~l~~~~~~~~ 168 (782)
...+.|.|+|.|.+...+||.+.+++.++..+.. .+.|+++.+.+|+.. ...+|++++.|.+..
T Consensus 87 ~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~-----i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~ 151 (808)
T PLN02270 87 ASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEE-----VDRWVEILDNDKNPIHGGSKIHVKLQYFEVT 151 (808)
T ss_pred cceEEEEEecCCccCceEEEEEEEEHHHhcCCCc-----cccEEeccCCCCCcCCCCCEEEEEEEEEEcc
Confidence 4789999999999988899999999999998643 778999999887762 234899999998643
No 216
>PLN02952 phosphoinositide phospholipase C
Probab=99.05 E-value=1.8e-09 Score=121.11 Aligned_cols=118 Identities=27% Similarity=0.395 Sum_probs=94.9
Q ss_pred eeEEEEEEEEeeCCCCC------CCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEE
Q 003975 39 MHYLCVNVVKARNLPVM------DVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTV 107 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~------d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V 107 (782)
...|.|+|+.|.+|+.. +.....||||+|.+-| .+.+|+++.++.||+|||+|.|.+..++-..|+|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 35799999999987532 1123459999999954 467999999999999999999998876677899999
Q ss_pred EeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEe
Q 003975 108 KDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWM 164 (782)
Q Consensus 108 ~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~ 164 (782)
+|+|.. .++++|++.+++..|..+- +|++|.+..|.....-.|.+.+++
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy--------R~VpL~~~~G~~l~~a~Llv~f~~ 598 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGI--------RSVPLHDKKGEKLKNVRLLMRFIF 598 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCc--------eeEeCcCCCCCCCCCEEEEEEEEe
Confidence 999987 8999999999999998763 589999888876334455555543
No 217
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.02 E-value=6.1e-11 Score=129.04 Aligned_cols=126 Identities=26% Similarity=0.529 Sum_probs=108.1
Q ss_pred cceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-------------e------------------EeeeccccCCCCC
Q 003975 37 ELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-------------Y------------------KGITKHLEKNQNP 85 (782)
Q Consensus 37 ~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-------------~------------------~~kT~~i~~t~nP 85 (782)
.+...|.|.+.+|++|.++|.+|.||||+...+-. + .+-|+++++|+||
T Consensus 111 ~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnP 190 (1103)
T KOG1328|consen 111 PPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNP 190 (1103)
T ss_pred CCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCc
Confidence 45667889999999999999999999999887621 0 1358999999999
Q ss_pred ccccEEEEEeccCCCCeEEEEEEeCCC----------------------------------C---CCceeEEEEEEcccc
Q 003975 86 VWNQIFAFSKERLQSSLLEVTVKDKDI----------------------------------G---KDDFVGRVSLDLSQV 128 (782)
Q Consensus 86 ~Wne~f~f~~~~~~~~~L~i~V~d~d~----------------------------------~---~d~~lG~~~v~l~~l 128 (782)
.|+|.|.|.+++.+.+.+++.+||+|. . .|||+|.+.++|+++
T Consensus 191 kW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~Ei 270 (1103)
T KOG1328|consen 191 KWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEI 270 (1103)
T ss_pred chhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcC
Confidence 999999999999999999999999871 1 489999999999999
Q ss_pred CCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEecccC
Q 003975 129 PLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQA 168 (782)
Q Consensus 129 ~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~~~ 168 (782)
... ..++||.|+..+..+.+.|.+.+.+|+.+..
T Consensus 271 P~~------Gld~WFkLepRS~~S~VqG~~~LklwLsT~e 304 (1103)
T KOG1328|consen 271 PPD------GLDQWFKLEPRSDKSKVQGQVKLKLWLSTKE 304 (1103)
T ss_pred Ccc------hHHHHhccCcccccccccceEEEEEEEeeec
Confidence 764 3789999999887777999999999998643
No 218
>PLN02223 phosphoinositide phospholipase C
Probab=99.02 E-value=3.2e-09 Score=116.53 Aligned_cols=105 Identities=20% Similarity=0.271 Sum_probs=83.7
Q ss_pred eeEEEEEEEEeecCCCC--ccCCCCCC-CcEEEEEECC-----EEEeecccCCCCCCeeccEEEEEeeCCC-ceEEEEEE
Q 003975 366 IGTLELGILSAKNLMQM--KSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLAPRWNEQYTWDVYDPC-TVITIGVF 436 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~--~~~~~~~~-dpyv~v~~~~-----~~~rT~~~~~t~~P~wne~~~f~v~~~~-~~l~i~v~ 436 (782)
...|.|+|+.|++++.. ...+.... ||||+|.+.| ...+|.+..++.||+|||+|.|++..|. ..|+|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 35899999999998621 11111234 9999999854 3578887788999999999999998874 47999999
Q ss_pred eCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecC
Q 003975 437 DNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLT 479 (782)
Q Consensus 437 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~ 479 (782)
|+|..+ +|+++|+..||++.|..|- ++++|.+..
T Consensus 488 D~D~~~------~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~ 521 (537)
T PLN02223 488 DYEVST------ADAFCGQTCLPVSELIEGI---RAVPLYDER 521 (537)
T ss_pred ecCCCC------CCcEEEEEecchHHhcCCc---eeEeccCCC
Confidence 999754 7999999999999999985 678887643
No 219
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.98 E-value=2e-09 Score=91.42 Aligned_cols=84 Identities=29% Similarity=0.395 Sum_probs=73.8
Q ss_pred EEEEEEEeeCCCCCC---CCCCCCcEEEEEECCe-EeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCCCCce
Q 003975 42 LCVNVVKARNLPVMD---VSGSLDPYVEVKLGNY-KGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDF 117 (782)
Q Consensus 42 L~V~v~~a~~L~~~d---~~g~~dPyv~v~~~~~-~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~~d~~ 117 (782)
|.|+|.+|+|+...+ ..+.+||||.+++++. +.||++ +.||.|||+|.|+++. ...+++.|||+.....-.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk--~nEiel~VyDk~~~~~~P 75 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK--NNEEEVIVYDKGGDQPVP 75 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC--CcEEEEEEEeCCCCeecc
Confidence 579999999998777 5788999999999985 889987 5899999999999953 788999999997767778
Q ss_pred eEEEEEEccccCC
Q 003975 118 VGRVSLDLSQVPL 130 (782)
Q Consensus 118 lG~~~v~l~~l~~ 130 (782)
||..-+.+++|..
T Consensus 76 i~llW~~~sdi~E 88 (109)
T cd08689 76 VGLLWLRLSDIAE 88 (109)
T ss_pred eeeehhhHHHHHH
Confidence 9999999998865
No 220
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.98 E-value=2.2e-09 Score=114.14 Aligned_cols=119 Identities=25% Similarity=0.484 Sum_probs=100.1
Q ss_pred eEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCeecc-EEEEEeeCC---CceEEEEEEeCCcC
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNE-QYTWDVYDP---CTVITIGVFDNCYV 441 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne-~~~f~v~~~---~~~l~i~v~d~~~~ 441 (782)
|.|-|+|..|++||-||.. ... |.||.|++++..+||.+..+++||.||. -|.|+|.|. ..+|.|.++|+|..
T Consensus 3 gkl~vki~a~r~lpvmdka--sd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dty 80 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKA--SDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTY 80 (1169)
T ss_pred CcceeEEEeccCCcccccc--cccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccc
Confidence 7889999999999999854 233 9999999999999999999999999984 589999874 56999999999998
Q ss_pred CCCCCCCCCCccEEEEEEcccc----------cCCceEEEEEeeeecCCCCCCcCcEEEEEEEEE
Q 003975 442 NGSKDDAKDQRIGKVRIRLSTL----------ETDRIYTHYYPLLLLTPSGLKNNGELHLALRFT 496 (782)
Q Consensus 442 ~~~~~~~~d~~lG~~~i~l~~l----------~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~~ 496 (782)
+ .++-||++.|++..| -++.....|+|+.+.-. | -.|+|.+-++..
T Consensus 81 s------andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtih-g--irgeinvivkvd 136 (1169)
T KOG1031|consen 81 S------ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIH-G--IRGEINVIVKVD 136 (1169)
T ss_pred c------cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecc-c--ccceeEEEEEEe
Confidence 7 899999999999987 23567899999987322 2 258888877663
No 221
>PLN02952 phosphoinositide phospholipase C
Probab=98.96 E-value=7.3e-09 Score=116.31 Aligned_cols=119 Identities=22% Similarity=0.253 Sum_probs=92.0
Q ss_pred eeEEEEEEEEeecCCCCc---cCCCCCC-CcEEEEEECC-----EEEeecccCCCCCCeeccEEEEEeeCCC-ceEEEEE
Q 003975 366 IGTLELGILSAKNLMQMK---SKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLAPRWNEQYTWDVYDPC-TVITIGV 435 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~---~~~~~~~-dpyv~v~~~~-----~~~rT~~~~~t~~P~wne~~~f~v~~~~-~~l~i~v 435 (782)
...|.|+|+.|++++... ..+.... ||||+|.+-| ...+|+++.++.||+|||+|.|++..|. ..|+|.|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 358999999999985321 1112234 9999999843 5689999999999999999999998873 5799999
Q ss_pred EeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEEE
Q 003975 436 FDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRFT 496 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~~ 496 (782)
+|+|..+ .|+++|++.||++.|..|. +|++|.+.. | ...+..+|-++|.
T Consensus 549 ~D~D~~~------~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~--G-~~l~~a~Llv~f~ 597 (599)
T PLN02952 549 REYDMSE------KDDFGGQTCLPVSELRPGI---RSVPLHDKK--G-EKLKNVRLLMRFI 597 (599)
T ss_pred EecCCCC------CCCeEEEEEcchhHhcCCc---eeEeCcCCC--C-CCCCCEEEEEEEE
Confidence 9998765 7999999999999999986 599997533 2 2235566666663
No 222
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.96 E-value=4.7e-09 Score=117.63 Aligned_cols=118 Identities=25% Similarity=0.345 Sum_probs=95.7
Q ss_pred eeEEEEEEEEeeCCCCC------CCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEE
Q 003975 39 MHYLCVNVVKARNLPVM------DVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTV 107 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~------d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V 107 (782)
...|.|+|+.+.+++.. +.....||||+|.+-| .+.+|++..++.||+|||+|.|.+.-++-..|+|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 35799999999987521 2234579999999954 357899998999999999999998877778999999
Q ss_pred EeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEe
Q 003975 108 KDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWM 164 (782)
Q Consensus 108 ~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~ 164 (782)
+|+|.. +|+|+|++.+++..|..+- +..+|.+..|.......|.+.+.+
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~Gy--------R~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQGI--------HAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCcc--------ceEeccCCCcCCCCCCeeEEEEEe
Confidence 999987 9999999999999998763 356999988876445577777654
No 223
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.94 E-value=1e-08 Score=111.50 Aligned_cols=198 Identities=21% Similarity=0.235 Sum_probs=141.1
Q ss_pred CCCCCCCCCcEEEEEEC-------------------CeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-
Q 003975 54 VMDVSGSLDPYVEVKLG-------------------NYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG- 113 (782)
Q Consensus 54 ~~d~~g~~dPyv~v~~~-------------------~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~- 113 (782)
..|..++.||.|.+... .+..+|.++.+.+||.|-+.|.+.......+.|++.++|.+..
T Consensus 4 ~~d~~~~~~~~c~~~~~~s~~~~~~~~~l~~~~~~~~e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~ 83 (529)
T KOG1327|consen 4 AYDIFSKSDPICKLFYLTSGGAWLETLELTKEDDVWEEVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRT 83 (529)
T ss_pred ccccccccCceeeeeccCCCccccccccccccccccccccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCcc
Confidence 33445666777666552 1345899999999999999999887766688999999997643
Q ss_pred ----CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEecccCCccccccccCCcccccccccc
Q 003975 114 ----KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQADESFAEAWHSDAHNISQKNLA 189 (782)
Q Consensus 114 ----~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 189 (782)
..+|+|++...+..+....... .+|.-.++.....|+|.+.+.-....+
T Consensus 84 ~~l~~~dflg~~~c~l~~ivs~~~~~-------~~l~~~~~~~~~~g~iti~aee~~~~~-------------------- 136 (529)
T KOG1327|consen 84 PDLSSADFLGTAECTLSQIVSSSGLT-------GPLLLKPGKNAGSGTITISAEEDESDN-------------------- 136 (529)
T ss_pred CCcchhcccceeeeehhhhhhhhhhh-------hhhhcccCccCCcccEEEEeecccccC--------------------
Confidence 7889999999999998653211 122222222224677777652211000
Q ss_pred ccccccccCCceEEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C----eEeeeecccCCCCCCcccceeEEEecC---
Q 003975 190 NTRSKVYFSPKLYYLRVFVFEAQDLVPSDKGRAPDACVRIQLG--N----QLRVTRPSHVRSVNPVWNEEHMFVASE--- 260 (782)
Q Consensus 190 ~~rs~~~~~p~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~--~----~~~~T~~~~~~t~nP~wne~f~f~v~~--- 260 (782)
....-.++|++|..++..+++|||..++-. . ..++|.++++ +++|.|.+. ......
T Consensus 137 -------------~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n-~l~p~w~~~-~i~~~~l~~ 201 (529)
T KOG1327|consen 137 -------------DVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKN-TLNPQWAPF-SISLQSLCS 201 (529)
T ss_pred -------------ceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceecc-CCCCccccc-ccchhhhcc
Confidence 022334568999999999999999988763 1 3578999886 999999763 332222
Q ss_pred -CCCCeEEEEEEEccCCCCCceeEEEEEeCCCcc
Q 003975 261 -PFEDLIIVTVEDRIRPGKDEILGRELIPVRNVP 293 (782)
Q Consensus 261 -~~~~~l~i~V~d~~~~~~d~~iG~~~i~l~~l~ 293 (782)
..+..+.+.+||++..+++++||++..+++.+.
T Consensus 202 ~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~ 235 (529)
T KOG1327|consen 202 KDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQ 235 (529)
T ss_pred cCCCCceEEEEeccCCCCCcCceeEecccHHHhc
Confidence 224688899999999999999999999998886
No 224
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.93 E-value=1e-08 Score=114.71 Aligned_cols=117 Identities=25% Similarity=0.398 Sum_probs=94.3
Q ss_pred eEEEEEEEEeeCCC--CC----CCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEE
Q 003975 40 HYLCVNVVKARNLP--VM----DVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVK 108 (782)
Q Consensus 40 ~~L~V~v~~a~~L~--~~----d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~ 108 (782)
..|.|+|+.|.+++ .. +.....||||+|.+-| .+.+|+++.++.||+|||+|.|.+..++-..|+|.|+
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~ 531 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVH 531 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEE
Confidence 57999999998753 11 2234679999999954 4679999999999999999999988766788999999
Q ss_pred eCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEe
Q 003975 109 DKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWM 164 (782)
Q Consensus 109 d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~ 164 (782)
|+|.. .|+++|++.+++..|..+- +..+|.+..|.......|.+.+.+
T Consensus 532 d~D~~~~ddfigq~~lPv~~Lr~Gy--------R~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 532 EYDMSEKDDFGGQTCLPVWELSQGI--------RAFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred ECCCCCCCcEEEEEEcchhhhhCcc--------ceEEccCCCcCCCCCeeEEEEEEe
Confidence 99987 8999999999999998763 456999988876344566666643
No 225
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.88 E-value=7.6e-09 Score=87.99 Aligned_cols=85 Identities=24% Similarity=0.350 Sum_probs=70.2
Q ss_pred EEEEEEEeecCCCCccCCCCCC-CcEEEEEECCE-EEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCCCCC
Q 003975 369 LELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNK-WIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGSKD 446 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~-~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~~~ 446 (782)
|.|+|..|+|+...++....+. ||||.|++++. ++||++ +.||.|||.|.|+| +....+.|.|||...
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~V-dk~nEiel~VyDk~~------ 70 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPV-EKNNEEEVIVYDKGG------ 70 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEe-cCCcEEEEEEEeCCC------
Confidence 5789999999998764212244 99999999886 899998 58999999999999 567899999999852
Q ss_pred CCCCCccEEEEEEccccc
Q 003975 447 DAKDQRIGKVRIRLSTLE 464 (782)
Q Consensus 447 ~~~d~~lG~~~i~l~~l~ 464 (782)
+..-.||-.-|.+++|.
T Consensus 71 -~~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 71 -DQPVPVGLLWLRLSDIA 87 (109)
T ss_pred -CeecceeeehhhHHHHH
Confidence 25568999999999973
No 226
>PLN02228 Phosphoinositide phospholipase C
Probab=98.85 E-value=2.4e-08 Score=111.60 Aligned_cols=118 Identities=22% Similarity=0.348 Sum_probs=96.4
Q ss_pred eEEEEEEEEeeCCCC---C---CCCCCCCcEEEEEECC-----eEeeeccccCCCCCcc-ccEEEEEeccCCCCeEEEEE
Q 003975 40 HYLCVNVVKARNLPV---M---DVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVW-NQIFAFSKERLQSSLLEVTV 107 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~---~---d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~W-ne~f~f~~~~~~~~~L~i~V 107 (782)
..|.|+|++|.+|+. . +.....||||+|.+-| .+++|+++.++.||+| ||+|.|.+..++-..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 479999999998732 1 1223579999999854 3579999988899999 99999998876678899999
Q ss_pred EeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEec
Q 003975 108 KDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMG 165 (782)
Q Consensus 108 ~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~ 165 (782)
+|+|.. .|+++|++.+++..|..+- +..+|.+..|.....++|.+.+.+.
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~GY--------R~VpL~~~~G~~l~~atLfv~~~~~ 561 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKSGV--------RAVRLHDRAGKAYKNTRLLVSFALD 561 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhCCe--------eEEEccCCCCCCCCCeEEEEEEEEc
Confidence 999977 8999999999999997752 4679999888864567788888765
No 227
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.84 E-value=1.7e-08 Score=112.93 Aligned_cols=118 Identities=21% Similarity=0.362 Sum_probs=95.8
Q ss_pred eEEEEEEEEeeCCCCC-CC---CCCCCcEEEEEECC-----eEeeecccc-CCCCCccccEEEEEeccCCCCeEEEEEEe
Q 003975 40 HYLCVNVVKARNLPVM-DV---SGSLDPYVEVKLGN-----YKGITKHLE-KNQNPVWNQIFAFSKERLQSSLLEVTVKD 109 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~-d~---~g~~dPyv~v~~~~-----~~~kT~~i~-~t~nP~Wne~f~f~~~~~~~~~L~i~V~d 109 (782)
-.|.|+|+.+.+++.. +. +..+||||.|++-| ...+|++++ ++-||.|+|+|.|.+.-++-..|+|.|+|
T Consensus 616 ~tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d 695 (746)
T KOG0169|consen 616 KTLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHD 695 (746)
T ss_pred ceeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEe
Confidence 3799999999976543 22 35689999999966 357999555 45699999999999988777899999999
Q ss_pred CCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEec
Q 003975 110 KDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMG 165 (782)
Q Consensus 110 ~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~ 165 (782)
+|.. +|+|+|+..+++..|..+- +-.+|.+..|+......|.+.+.+.
T Consensus 696 ~d~~~~ddF~GQ~tlP~~~L~~Gy--------RhVpL~~~~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 696 YDYIGKDDFIGQTTLPVSELRQGY--------RHVPLLSREGEALSSASLFVRIAIV 744 (746)
T ss_pred cCCCCcccccceeeccHHHhhCce--------eeeeecCCCCccccceeEEEEEEEe
Confidence 9999 8999999999999998763 3458999888765567777777654
No 228
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.83 E-value=3e-08 Score=111.28 Aligned_cols=120 Identities=18% Similarity=0.249 Sum_probs=89.5
Q ss_pred eeEEEEEEEEeecCCCCcc---CCCCCC-CcEEEEEECC-----EEEeecccCCCCCCeeccEEEEEeeCCC-ceEEEEE
Q 003975 366 IGTLELGILSAKNLMQMKS---KDGKLT-DAYCVAKYGN-----KWIRTRTILDTLAPRWNEQYTWDVYDPC-TVITIGV 435 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~---~~~~~~-dpyv~v~~~~-----~~~rT~~~~~t~~P~wne~~~f~v~~~~-~~l~i~v 435 (782)
...|.|+|+.+++++.... .+.... ||||+|.+-| ...||++..++.||.|||+|.|++..|. ..|+|.|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 3579999999998753211 112234 9999999833 3578999899999999999999998874 6899999
Q ss_pred EeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 436 FDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
+|+|..+ +|+++|+..||++.|..|- +.++|.+....... .-.|.+.+.|
T Consensus 548 ~d~d~~~------~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l~-~~~Ll~~f~~ 597 (598)
T PLN02230 548 HEHDINE------KDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKYS-STRLLMRFEF 597 (598)
T ss_pred EECCCCC------CCCEEEEEEcchHHhhCcc---ceEeccCCCcCCCC-CCeeEEEEEe
Confidence 9998754 8999999999999999885 47788753322111 2355555443
No 229
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.82 E-value=8e-09 Score=109.92 Aligned_cols=125 Identities=31% Similarity=0.482 Sum_probs=103.6
Q ss_pred eeEEEEEEEEeeCCCCCCC-CCCCCcEEEEEECCeEeeeccccCCCCCcccc-EEEEEec--cCCCCeEEEEEEeCCCC-
Q 003975 39 MHYLCVNVVKARNLPVMDV-SGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQ-IFAFSKE--RLQSSLLEVTVKDKDIG- 113 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d~-~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne-~f~f~~~--~~~~~~L~i~V~d~d~~- 113 (782)
.|.|.|+|+.|++||.+|. +...|.||++++++..+||.+..+++||.||. .|.|.++ +++...|.|.+.|+|..
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtys 81 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYS 81 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccc
Confidence 3678999999999999987 45689999999999999999999999999995 6888886 56788999999999999
Q ss_pred CCceeEEEEEEccccCCCC-----CCCCCCCCEEEEeccCCCCcccceEEEEEEEec
Q 003975 114 KDDFVGRVSLDLSQVPLRV-----PPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMG 165 (782)
Q Consensus 114 ~d~~lG~~~v~l~~l~~~~-----~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~ 165 (782)
.+|-||.+.+++..|.... ...++....|+++.+.-.. .+|+|.+-+...
T Consensus 82 andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihg--irgeinvivkvd 136 (1169)
T KOG1031|consen 82 ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHG--IRGEINVIVKVD 136 (1169)
T ss_pred cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceeccc--ccceeEEEEEEe
Confidence 9999999999999886432 1124566789999885322 478888776654
No 230
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.82 E-value=4.3e-08 Score=109.87 Aligned_cols=120 Identities=18% Similarity=0.246 Sum_probs=89.0
Q ss_pred eeEEEEEEEEeecCC--CCc-cCCCCCC-CcEEEEEECC-----EEEeecccCCCCCCeeccEEEEEeeCCC-ceEEEEE
Q 003975 366 IGTLELGILSAKNLM--QMK-SKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLAPRWNEQYTWDVYDPC-TVITIGV 435 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~--~~~-~~~~~~~-dpyv~v~~~~-----~~~rT~~~~~t~~P~wne~~~f~v~~~~-~~l~i~v 435 (782)
...|.|+|+.+++++ ... ..+.... ||||+|.+.| ...||+++.++.||.|||.|+|.+..|. ..|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 358999999999853 111 1112234 9999999843 4689999999999999999999998874 6899999
Q ss_pred EeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 436 FDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
+|+|..+ .|+++|+..||++.|..|- +.++|.+...... ..-.|.+.+.|
T Consensus 531 ~d~D~~~------~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g~~l-~~a~Lfv~~~~ 580 (581)
T PLN02222 531 HEYDMSE------KDDFGGQTCLPVWELSQGI---RAFPLHSRKGEKY-KSVKLLVKVEF 580 (581)
T ss_pred EECCCCC------CCcEEEEEEcchhhhhCcc---ceEEccCCCcCCC-CCeeEEEEEEe
Confidence 9998654 7999999999999999885 5778875333211 12355555443
No 231
>PLN02228 Phosphoinositide phospholipase C
Probab=98.82 E-value=4.3e-08 Score=109.55 Aligned_cols=121 Identities=17% Similarity=0.208 Sum_probs=92.1
Q ss_pred eEEEEEEEEeecCCC---CccCCCCCC-CcEEEEEECC-----EEEeecccCCCCCCee-ccEEEEEeeCCC-ceEEEEE
Q 003975 367 GTLELGILSAKNLMQ---MKSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLAPRW-NEQYTWDVYDPC-TVITIGV 435 (782)
Q Consensus 367 g~l~v~v~~a~~L~~---~~~~~~~~~-dpyv~v~~~~-----~~~rT~~~~~t~~P~w-ne~~~f~v~~~~-~~l~i~v 435 (782)
..|.|+|+.|++|+. .+..+.... ||||+|.+-| ..+||+++.++.||.| ||.|.|.+..|. ..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 479999999998732 111112234 9999999833 4589999999999999 999999998874 6899999
Q ss_pred EeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEEEE
Q 003975 436 FDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRFTC 497 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~~~ 497 (782)
+|+|..+ .|+++|+..||++.|..|- +.++|.+...... ...+|.+.+.+..
T Consensus 511 ~D~d~~~------~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l-~~atLfv~~~~~~ 562 (567)
T PLN02228 511 QDYDNDT------QNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAY-KNTRLLVSFALDP 562 (567)
T ss_pred EeCCCCC------CCCEEEEEEcchhHhhCCe---eEEEccCCCCCCC-CCeEEEEEEEEcC
Confidence 9998654 7999999999999998885 5678875333221 2367888777644
No 232
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.76 E-value=4.7e-08 Score=109.37 Aligned_cols=118 Identities=21% Similarity=0.324 Sum_probs=89.7
Q ss_pred EEEEEEEEeecCCCCccCCCCCC--CcEEEEEECC-----EEEeec-ccCCCCCCeeccEEEEEeeCCC-ceEEEEEEeC
Q 003975 368 TLELGILSAKNLMQMKSKDGKLT--DAYCVAKYGN-----KWIRTR-TILDTLAPRWNEQYTWDVYDPC-TVITIGVFDN 438 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~--dpyv~v~~~~-----~~~rT~-~~~~t~~P~wne~~~f~v~~~~-~~l~i~v~d~ 438 (782)
.|.|.|+.++|+.+.......|. ||||.|++-| ...+|+ +..++.||.|+|+|+|++..|. +-|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 79999999998776432211233 9999999855 358999 5567889999999999999884 5899999999
Q ss_pred CcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 439 CYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 439 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
|..+ +|+|+|+..||++.|..|- +-+||.+..... -..-.|.+.+.+
T Consensus 697 d~~~------~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~G~~-~~~asLfv~i~~ 743 (746)
T KOG0169|consen 697 DYIG------KDDFIGQTTLPVSELRQGY---RHVPLLSREGEA-LSSASLFVRIAI 743 (746)
T ss_pred CCCC------cccccceeeccHHHhhCce---eeeeecCCCCcc-ccceeEEEEEEE
Confidence 9866 8999999999999999885 467777532211 123556666554
No 233
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.75 E-value=3.9e-09 Score=115.31 Aligned_cols=100 Identities=31% Similarity=0.481 Sum_probs=86.9
Q ss_pred eeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-------EeeeccccCCCCCccccEEEEEecc----
Q 003975 29 TASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNY-------KGITKHLEKNQNPVWNQIFAFSKER---- 97 (782)
Q Consensus 29 ~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-------~~kT~~i~~t~nP~Wne~f~f~~~~---- 97 (782)
++..|... -..|.|.|+.|+++.+-|.+|.|||||.|.++.. .++|+|+.+|+||+|+|.|+|.+..
T Consensus 938 vr~~y~~n--~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~ 1015 (1103)
T KOG1328|consen 938 VRAYYNGN--AQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCS 1015 (1103)
T ss_pred EEEEeecc--ccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccc
Confidence 44455543 3589999999999999999999999999999873 4799999999999999999999863
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCC
Q 003975 98 LQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPL 130 (782)
Q Consensus 98 ~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~ 130 (782)
.+...|.|+|.|+|.. .+||-|++.+.|.++..
T Consensus 1016 te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1016 TETAMLHFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred cccceEEEEeeccceecccccchHHHHhhCCCCC
Confidence 2367899999999999 99999999999998864
No 234
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.72 E-value=1.3e-08 Score=88.96 Aligned_cols=107 Identities=21% Similarity=0.336 Sum_probs=82.5
Q ss_pred EEEEEEEeecCCCCccC-----------CCCCCCcEEEEEE----CCEEEeecccCCCCCCeeccEEEEEee--------
Q 003975 369 LELGILSAKNLMQMKSK-----------DGKLTDAYCVAKY----GNKWIRTRTILDTLAPRWNEQYTWDVY-------- 425 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~-----------~~~~~dpyv~v~~----~~~~~rT~~~~~t~~P~wne~~~f~v~-------- 425 (782)
|.|.|++|.||+..... ..-|-++||++.+ +++..+|+++.++..|.||..++|++.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 46889999999864321 1224499999985 467899999999999999999999886
Q ss_pred CC--------CceEEEEEEeCCcCCCCC----CCCCCCccEEEEEEcccccC-CceEEEEEee
Q 003975 426 DP--------CTVITIGVFDNCYVNGSK----DDAKDQRIGKVRIRLSTLET-DRIYTHYYPL 475 (782)
Q Consensus 426 ~~--------~~~l~i~v~d~~~~~~~~----~~~~d~~lG~~~i~l~~l~~-~~~~~~w~~L 475 (782)
.. ...+.++||+...-+.++ ...+|-+||.+.||+.+|.. ...+.+|||+
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 11 348999999988654333 14567789999999999865 4568999985
No 235
>PLN02352 phospholipase D epsilon
Probab=98.70 E-value=1.3e-07 Score=108.17 Aligned_cols=119 Identities=22% Similarity=0.273 Sum_probs=92.5
Q ss_pred eEEEEEEEEeecCCCCcc---CCCCCCCcEEEEEECCE-EEeecccCCCCCCeeccEEEEEeeCCC-ceEEEEEEeCCcC
Q 003975 367 GTLELGILSAKNLMQMKS---KDGKLTDAYCVAKYGNK-WIRTRTILDTLAPRWNEQYTWDVYDPC-TVITIGVFDNCYV 441 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~---~~~~~~dpyv~v~~~~~-~~rT~~~~~t~~P~wne~~~f~v~~~~-~~l~i~v~d~~~~ 441 (782)
|.|.++|++|+-+...-. .-+.++||||.|.+++. ..|| .+..||+|||.|..++..+. ..+.|.|.|.
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~~--- 83 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKTK--- 83 (758)
T ss_pred cceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEecC---
Confidence 899999999984322100 01234499999999875 5788 55669999999999999886 6899999992
Q ss_pred CCCCCCCCCCccEEEEEEcccccCCce-EEEEEeeeecCCCCCCcCcEEEEEEEEEEcch
Q 003975 442 NGSKDDAKDQRIGKVRIRLSTLETDRI-YTHYYPLLLLTPSGLKNNGELHLALRFTCTAW 500 (782)
Q Consensus 442 ~~~~~~~~d~~lG~~~i~l~~l~~~~~-~~~w~~L~~~~~~g~~~~G~i~l~~~~~~~~~ 500 (782)
-.+||++.||+.+|..+.. +++|+++.....+-. +..+|+++++|.+...
T Consensus 84 --------~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~ 134 (758)
T PLN02352 84 --------CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPN-PELKLRFMLWFRPAEL 134 (758)
T ss_pred --------CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCC-CCCEEEEEEEEEEhhh
Confidence 4799999999999999866 999999997554322 2259999999987543
No 236
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.66 E-value=2.6e-07 Score=100.77 Aligned_cols=179 Identities=21% Similarity=0.184 Sum_probs=125.5
Q ss_pred EeeeecccCCCCCCcccceeEEEecCCCCCeEEEEEEEccCC----CCCceeEEEEEeCCCcccccCCCCCCCCceEEcc
Q 003975 235 LRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIRP----GKDEILGRELIPVRNVPQRHETTKLPDPRWFNLH 310 (782)
Q Consensus 235 ~~~T~~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~----~~d~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 310 (782)
..+|.++.. .+||.|.+.|.........+.+++.++|.+.. ...+++|++...++.+.... ....-..++
T Consensus 42 ~~rte~i~~-~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~-----~~~~~l~~~ 115 (529)
T KOG1327|consen 42 VGRTEVIRN-VLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSS-----GLTGPLLLK 115 (529)
T ss_pred ccceeeeec-cCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhh-----hhhhhhhcc
Confidence 357888886 99999999998888777788999999997643 56789999999999887432 111112222
Q ss_pred CCCcccccccccccccccceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCC
Q 003975 311 KPSLSAEEGAEKNKEKFSSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLT 390 (782)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~ 390 (782)
.. .....|.|.+.+.-.. .. -....-.++|++|.++|.+ ++
T Consensus 116 ~~-----------~~~~~g~iti~aee~~------------------------~~-~~~~~~~~~~~~ld~kd~f---~k 156 (529)
T KOG1327|consen 116 PG-----------KNAGSGTITISAEEDE------------------------SD-NDVVQFSFRAKNLDPKDFF---SK 156 (529)
T ss_pred cC-----------ccCCcccEEEEeeccc------------------------cc-CceeeeeeeeeecCccccc---cc
Confidence 11 1122366655553100 00 1222334568999988765 66
Q ss_pred -CcEEEEEE--CC----EEEeecccCCCCCCeeccEEEEEee-----CCCceEEEEEEeCCcCCCCCCCCCCCccEEEEE
Q 003975 391 -DAYCVAKY--GN----KWIRTRTILDTLAPRWNEQYTWDVY-----DPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRI 458 (782)
Q Consensus 391 -dpyv~v~~--~~----~~~rT~~~~~t~~P~wne~~~f~v~-----~~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i 458 (782)
|||..+.- +. ..++|.+++++++|.|.+ |..+.. ++...+.|.+||++.-+ ++++||++.-
T Consensus 157 sd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~------~~~~ig~~~t 229 (529)
T KOG1327|consen 157 SDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNG------KHDLIGKFQT 229 (529)
T ss_pred CCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCC------CcCceeEecc
Confidence 99999975 22 348999999999999964 444333 34578999999999765 7899999999
Q ss_pred EcccccC
Q 003975 459 RLSTLET 465 (782)
Q Consensus 459 ~l~~l~~ 465 (782)
+++++..
T Consensus 230 t~~~~~~ 236 (529)
T KOG1327|consen 230 TLSELQE 236 (529)
T ss_pred cHHHhcc
Confidence 9999864
No 237
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.62 E-value=1.7e-07 Score=103.83 Aligned_cols=119 Identities=20% Similarity=0.322 Sum_probs=94.2
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC------eEeeeccccCCCCCccc-cEEEEEeccCCCCeEEEEEEeCCC
Q 003975 40 HYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN------YKGITKHLEKNQNPVWN-QIFAFSKERLQSSLLEVTVKDKDI 112 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~------~~~kT~~i~~t~nP~Wn-e~f~f~~~~~~~~~L~i~V~d~d~ 112 (782)
-.|.|+|+.|+.|+... .|.+.|||+|.+-| ..++|.++.+++||+|| |+|.|.+.+++-..|+|.|+|.|.
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 36899999999999544 45678999999954 34677778888999999 999999999988999999999999
Q ss_pred C-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEeccc
Q 003975 113 G-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQ 167 (782)
Q Consensus 113 ~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~~ 167 (782)
+ ...|||++.+++..+..+- +-.+|.+.-.+......|++.+.+.+.
T Consensus 1144 fs~~~FiaqA~yPv~~ik~Gf--------RsVpLkN~ySEdlELaSLLv~i~m~~~ 1191 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGF--------RSVPLKNGYSEDLELASLLVFIEMRPV 1191 (1267)
T ss_pred cCCcceeeeeecchhhhhccc--------eeeecccCchhhhhhhhheeeeEeccc
Confidence 9 6679999999999998753 234776654333345677777766543
No 238
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.61 E-value=1.9e-07 Score=103.57 Aligned_cols=98 Identities=18% Similarity=0.328 Sum_probs=81.8
Q ss_pred eEEEEEEEEeecCCCCccCCCCCC-CcEEEEEECC-----EE-EeecccCCCCCCeec-cEEEEEeeCC-CceEEEEEEe
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGN-----KW-IRTRTILDTLAPRWN-EQYTWDVYDP-CTVITIGVFD 437 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~~-~rT~~~~~t~~P~wn-e~~~f~v~~~-~~~l~i~v~d 437 (782)
-.|.|.|+.|+.|+. .|+|. .|||.|++-| .+ +.|.++.+.+||+|| |.|+|.|.+| ...|++.|+|
T Consensus 1065 ~~lsv~vigaRHL~k----~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~e 1140 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPK----LGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYE 1140 (1267)
T ss_pred eEEEEEEeecccccc----CCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEec
Confidence 489999999999995 45566 7999999833 33 455566789999999 9999999998 4689999999
Q ss_pred CCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeee
Q 003975 438 NCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLL 477 (782)
Q Consensus 438 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~ 477 (782)
+|.++ ...|||++..|+..|..|- +.+||.+
T Consensus 1141 eDmfs------~~~FiaqA~yPv~~ik~Gf---RsVpLkN 1171 (1267)
T KOG1264|consen 1141 EDMFS------DPNFLAQATYPVKAIKSGF---RSVPLKN 1171 (1267)
T ss_pred ccccC------Ccceeeeeecchhhhhccc---eeeeccc
Confidence 99987 6679999999999998874 5677775
No 239
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.44 E-value=2.3e-07 Score=106.75 Aligned_cols=119 Identities=21% Similarity=0.288 Sum_probs=95.9
Q ss_pred cccccceEEEEEEeccCccccCCCcccCCCCCccccccccCceeEEEEEEEEeecCCCCccCCCCCCCcEEEEEECC---
Q 003975 324 KEKFSSKILISFCLEAGYHVFDESTHFSSDLQTSSKSLRKGSIGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGN--- 400 (782)
Q Consensus 324 ~~~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~--- 400 (782)
.++..|+|+++|++. .|.|.|.|..|+||+-.. +|...||||+.++-.
T Consensus 1508 p~~iggqV~LsIsY~---------------------------~~~LtImV~H~K~L~~Lq--dg~~P~pyVK~YLlPdp~ 1558 (1639)
T KOG0905|consen 1508 PGEIGGQVKLSISYN---------------------------NGTLTIMVMHAKGLALLQ--DGQDPDPYVKTYLLPDPR 1558 (1639)
T ss_pred ccccCceEEEEEEEc---------------------------CceEEEEhhhhccccccc--CCCCCCcceeEEecCCch
Confidence 345667888888763 379999999999996543 444449999999943
Q ss_pred --EEEeecccCCCCCCeeccEEEEEee---CC-CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEe
Q 003975 401 --KWIRTRTILDTLAPRWNEQYTWDVY---DP-CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYP 474 (782)
Q Consensus 401 --~~~rT~~~~~t~~P~wne~~~f~v~---~~-~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~ 474 (782)
.+.||+++++|.||.|||..++.-. .- ...|.++||.++.+. .+.++|.+.|+|.++...+...+||+
T Consensus 1559 k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~~~------en~~lg~v~i~L~~~~l~kE~~~Wy~ 1632 (1639)
T KOG0905|consen 1559 KTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGGLL------ENVFLGGVNIPLLKVDLLKESVGWYN 1632 (1639)
T ss_pred HhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeeccccee------eeeeeeeeecchhhcchhhhhcceee
Confidence 3589999999999999999888622 12 368999999998775 78999999999999987777779999
Q ss_pred eee
Q 003975 475 LLL 477 (782)
Q Consensus 475 L~~ 477 (782)
|..
T Consensus 1633 lg~ 1635 (1639)
T KOG0905|consen 1633 LGA 1635 (1639)
T ss_pred ccc
Confidence 964
No 240
>PLN02352 phospholipase D epsilon
Probab=98.42 E-value=2e-06 Score=98.59 Aligned_cols=118 Identities=19% Similarity=0.325 Sum_probs=91.5
Q ss_pred eEEEEEEEEeeCCCCC----CC-CCCCCcEEEEEECCe-EeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC
Q 003975 40 HYLCVNVVKARNLPVM----DV-SGSLDPYVEVKLGNY-KGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG 113 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~----d~-~g~~dPyv~v~~~~~-~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~ 113 (782)
|.|.++|.+|+-+... +. ....||||.|.+++. ..|| .+..||.|+|.|.+.+....+..+.|.|+|
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~---- 82 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT---- 82 (758)
T ss_pred cceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec----
Confidence 7899999999843221 11 122399999999984 5788 556699999999999976544679999999
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEecccC
Q 003975 114 KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQA 168 (782)
Q Consensus 114 ~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~~~ 168 (782)
...+||.+.+++.++..+.. ..+.|+++.+.+|+.....+|++++.|.+..
T Consensus 83 ~~~~ig~~~~p~~~~~~g~~----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 133 (758)
T PLN02352 83 KCSILGRFHIQAHQIVTEAS----FINGFFPLIMENGKPNPELKLRFMLWFRPAE 133 (758)
T ss_pred CCeEEEEEEEEHHHhhCCCc----ccceEEEcccCCCCCCCCCEEEEEEEEEEhh
Confidence 46799999999999988632 2679999999888763224999999998654
No 241
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.37 E-value=5.3e-07 Score=103.90 Aligned_cols=114 Identities=30% Similarity=0.425 Sum_probs=94.9
Q ss_pred CCceeeeeccccceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEE---ecc
Q 003975 26 GDKTASTYDLVELMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFS---KER 97 (782)
Q Consensus 26 ~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~---~~~ 97 (782)
..++++.|. .|.|.|.|.-|++|+--..+..+||||+.++.. .++||+++.+|.||.|||...+. .+.
T Consensus 1514 qV~LsIsY~----~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~ 1589 (1639)
T KOG0905|consen 1514 QVKLSISYN----NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEI 1589 (1639)
T ss_pred eEEEEEEEc----CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhh
Confidence 567777776 579999999999997655577899999999964 36899999999999999998766 334
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccC
Q 003975 98 LQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDK 148 (782)
Q Consensus 98 ~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (782)
+....|++.||..+.. .+.++|.+.++|.++...+. ...||.|...
T Consensus 1590 l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE-----~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1590 LQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKE-----SVGWYNLGAC 1636 (1639)
T ss_pred hhhheeeeeeecccceeeeeeeeeeecchhhcchhhh-----hcceeecccc
Confidence 5567899999999998 99999999999999876542 4589999753
No 242
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=98.35 E-value=0.00023 Score=75.38 Aligned_cols=244 Identities=17% Similarity=0.232 Sum_probs=157.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCCccccEEEEEec-------cCCCCeEEEEEEeCCCC-
Q 003975 42 LCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNPVWNQIFAFSKE-------RLQSSLLEVTVKDKDIG- 113 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~-------~~~~~~L~i~V~d~d~~- 113 (782)
+.|+|++|++.+... .-.-.+..+++++...|..+..+..|.||....|.++ ..+...|++++|..|..
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 679999999998763 3356799999999999999999999999999999875 34578899999998843
Q ss_pred -CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCC-cccceEEEEEEEecccCCccccccc--c----CCccc---
Q 003975 114 -KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGD-QTTKGEIMLAVWMGTQADESFAEAW--H----SDAHN--- 182 (782)
Q Consensus 114 -~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~-~~~~G~l~l~~~~~~~~d~~~~~~~--~----~~~~~--- 182 (782)
+.+.||.+.++|................||+|.+.+++ +..+-+|.+.+...........+.. . .+...
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~~~~~~ 158 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPPRQGHVP 158 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccccccCCccccccccCCCcccCCCc
Confidence 88999999999999822222222357899999887432 1245688888777644321000000 0 00000
Q ss_pred -----cc----------cccccccccccccCCceEEEEEEEEEeecCCCCC----C--CCCCCcEEEEEECCeEeeeecc
Q 003975 183 -----IS----------QKNLANTRSKVYFSPKLYYLRVFVFEAQDLVPSD----K--GRAPDACVRIQLGNQLRVTRPS 241 (782)
Q Consensus 183 -----~~----------~~~~~~~rs~~~~~p~~~~L~V~V~~a~~L~~~~----~--~~~~dpyv~v~l~~~~~~T~~~ 241 (782)
.+ +++.-+....- ..-....|.|++..|++|...- . .+....|....+-+....+..-
T Consensus 159 ~~~~~~~~~~l~~~l~~~eg~lQIGp~~-~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~F 237 (340)
T PF12416_consen 159 PPNSLLSPATLIPVLLEDEGLLQIGPPD-LCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEPF 237 (340)
T ss_pred ccccccCccceeEEEccCCceEeeCCch-hcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeeec
Confidence 00 00111111100 0224568999999999987652 1 1235667777776666666655
Q ss_pred cCCCCCCccc-ceeE-EEecCC---------CCCeEEEEEEEccCCCCCceeEEEEEeCCCcccc
Q 003975 242 HVRSVNPVWN-EEHM-FVASEP---------FEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQR 295 (782)
Q Consensus 242 ~~~t~nP~wn-e~f~-f~v~~~---------~~~~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~~ 295 (782)
+. ..+|.|. |.-. +.+... ....|.|.++. .+..||.+.+++..+...
T Consensus 238 ~~-l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~-----g~~~Lg~~~v~l~~Ll~~ 296 (340)
T PF12416_consen 238 KS-LSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCC-----GNQSLGSTSVPLQPLLPK 296 (340)
T ss_pred cc-cCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEee-----CCcEEEEEEEEhhhccCC
Confidence 54 7777664 2222 444321 13467777665 467899999999998743
No 243
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.90 E-value=1.3e-05 Score=65.24 Aligned_cols=89 Identities=18% Similarity=0.282 Sum_probs=67.5
Q ss_pred EEEEEEEeeCCCCCCCCC-CCCcEEEEEE--CC-eEeeeccccCCCCCccccEEEEEec--cCCCCeEEEEEEeCCCCCC
Q 003975 42 LCVNVVKARNLPVMDVSG-SLDPYVEVKL--GN-YKGITKHLEKNQNPVWNQIFAFSKE--RLQSSLLEVTVKDKDIGKD 115 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g-~~dPyv~v~~--~~-~~~kT~~i~~t~nP~Wne~f~f~~~--~~~~~~L~i~V~d~d~~~d 115 (782)
+.|+|++|++|.....-| .+.-|++=-+ .+ ...||+++++..||+|+|+|.|.+. +++.-.|.|.|+..-+ +.
T Consensus 1 iwitv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~~~-RK 79 (103)
T cd08684 1 IWITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQTP-RK 79 (103)
T ss_pred CEEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeeccCC-cc
Confidence 368999999998655433 3333544333 33 4689999999999999999999875 5667789999998332 88
Q ss_pred ceeEEEEEEccccCCC
Q 003975 116 DFVGRVSLDLSQVPLR 131 (782)
Q Consensus 116 ~~lG~~~v~l~~l~~~ 131 (782)
+.||.|.+.+.++-..
T Consensus 80 e~iG~~sL~l~s~gee 95 (103)
T cd08684 80 RTIGECSLSLRTLSTQ 95 (103)
T ss_pred ceeeEEEeecccCCHH
Confidence 9999999999988543
No 244
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.89 E-value=0.0087 Score=63.57 Aligned_cols=239 Identities=16% Similarity=0.203 Sum_probs=157.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeeecccCCCCCCcccceeEEEecC-------CCCCeEEEEEEEcc-C
Q 003975 204 LRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNEEHMFVASE-------PFEDLIIVTVEDRI-R 275 (782)
Q Consensus 204 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~~~~t~nP~wne~f~f~v~~-------~~~~~l~i~V~d~~-~ 275 (782)
+.|.|++|++.+... .-.-.|..+++++...|..+.. +..|.||....+.+.. .....|++++|..+ .
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~-~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~ 77 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPH-TESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS 77 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCC-CCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC
Confidence 678999999998762 3567899999999999998886 9999999999887632 23558999999888 5
Q ss_pred CCCCceeEEEEEeCCCcccccCCCCCCCCceEEccCCCcccccccccccccccceEEEEEEeccCcccc--C-------C
Q 003975 276 PGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCLEAGYHVF--D-------E 346 (782)
Q Consensus 276 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~~~~~~~~--d-------~ 346 (782)
.+..+.||.+-++|....-.+..+.....+||.|-.... + -.+.+-++.+.++++...... + +
T Consensus 78 ~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~------~--y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~ 149 (340)
T PF12416_consen 78 TGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSS------K--YKKHKPELLLSLSIEDDSKPQTPDFESFKAKP 149 (340)
T ss_pred CCcceeccEEEEEccccccccccccccCCCeeEcccccc------c--cccCCccEEEEEEEeccccccCCccccccccC
Confidence 678889999999998881111133457889999976521 1 112345677777775533210 0 0
Q ss_pred CcccCC-------CCCccc--ccc-------------ccCceeEEEEEEEEeecCCCCccC---CCCCC-CcEEEEEECC
Q 003975 347 STHFSS-------DLQTSS--KSL-------------RKGSIGTLELGILSAKNLMQMKSK---DGKLT-DAYCVAKYGN 400 (782)
Q Consensus 347 ~~~~~~-------d~~~~~--~~~-------------~~~~~g~l~v~v~~a~~L~~~~~~---~~~~~-dpyv~v~~~~ 400 (782)
.+.... ...+.. ..+ .....-.|.|+|-.|+||...-.. ...+. .-|...++-|
T Consensus 150 ~p~~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllG 229 (340)
T PF12416_consen 150 APPRQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLG 229 (340)
T ss_pred CCcccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecC
Confidence 011111 000000 000 012355788999999998876211 11123 5666667766
Q ss_pred EEEeecccCCCCCCee--ccEEEEEeeCC----------CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccC
Q 003975 401 KWIRTRTILDTLAPRW--NEQYTWDVYDP----------CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLET 465 (782)
Q Consensus 401 ~~~rT~~~~~t~~P~w--ne~~~f~v~~~----------~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~ 465 (782)
....|.......+|.| ++...+.+... ...|.|.++.. +..||.+.|++..+..
T Consensus 230 n~Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g-----------~~~Lg~~~v~l~~Ll~ 295 (340)
T PF12416_consen 230 NDVTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG-----------NQSLGSTSVPLQPLLP 295 (340)
T ss_pred cEeEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC-----------CcEEEEEEEEhhhccC
Confidence 6777778788888876 34443666431 34788888884 5689999999999854
No 245
>PLN02964 phosphatidylserine decarboxylase
Probab=97.76 E-value=4.8e-05 Score=86.90 Aligned_cols=90 Identities=22% Similarity=0.276 Sum_probs=76.8
Q ss_pred cccceeEEEEEEEEeeCCCCCCCCCCCCcE-EEEEECCeEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC
Q 003975 35 LVELMHYLCVNVVKARNLPVMDVSGSLDPY-VEVKLGNYKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG 113 (782)
Q Consensus 35 ~~~~~~~L~V~v~~a~~L~~~d~~g~~dPy-v~v~~~~~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~ 113 (782)
...-.|...+++++|+ ++ ..||| +.+.+|.+.+||++.++|.||+||+...|.+........+|.|||.+.+
T Consensus 49 ~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (644)
T PLN02964 49 AEDFSGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRL 121 (644)
T ss_pred cccccCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCC
Confidence 3344688999999997 33 35886 6667788999999999999999999999999876667789999999999
Q ss_pred -CCceeEEEEEEccccCCC
Q 003975 114 -KDDFVGRVSLDLSQVPLR 131 (782)
Q Consensus 114 -~d~~lG~~~v~l~~l~~~ 131 (782)
.++++|.|++++.++...
T Consensus 122 s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 122 SKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred CHHHhhhheeecHhhccHH
Confidence 999999999999888764
No 246
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.73 E-value=7e-05 Score=66.00 Aligned_cols=82 Identities=29% Similarity=0.387 Sum_probs=65.7
Q ss_pred CCcEEEEEE----CCeEeeeecccCCCCCCcccceeEEEec--------C-------CCCCeEEEEEEEccCC-------
Q 003975 223 PDACVRIQL----GNQLRVTRPSHVRSVNPVWNEEHMFVAS--------E-------PFEDLIIVTVEDRIRP------- 276 (782)
Q Consensus 223 ~dpyv~v~l----~~~~~~T~~~~~~t~nP~wne~f~f~v~--------~-------~~~~~l~i~V~d~~~~------- 276 (782)
-++||++.+ +++..+|+++.+ +-.|.|+..++|++. + .....+.++||+++..
T Consensus 33 VN~yv~i~lSFl~~~e~r~TrtVAr-SFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~ 111 (143)
T cd08683 33 VNSYVTIHLSFLPEKELRRTRTVAR-SFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIK 111 (143)
T ss_pred cceEEEEEeccCCCCceeeccchhh-hcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceec
Confidence 589999997 346788999987 999999999999875 1 1244899999987532
Q ss_pred ---CCCceeEEEEEeCCCcccccCCCCCCCCceEEc
Q 003975 277 ---GKDEILGRELIPVRNVPQRHETTKLPDPRWFNL 309 (782)
Q Consensus 277 ---~~d~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L 309 (782)
.+|-.+|.+.||+.+|. ..+.+...||++
T Consensus 112 ~~~~~DilLG~v~IPl~~Ll----~~rsGitGW~pi 143 (143)
T cd08683 112 IETSGDILLGTVKIPLRDLL----TKRSGITGWYPI 143 (143)
T ss_pred cCcCCcEEEEEEEeeHHHHh----hcccCccccccC
Confidence 35668999999999998 456779999975
No 247
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.57 E-value=5.1e-05 Score=79.03 Aligned_cols=119 Identities=18% Similarity=0.232 Sum_probs=93.1
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeEeeeccccCCCCCccccEEEEEecc---C--------CCCeE
Q 003975 40 HYLCVNVVKARNLPVMDVSGSLDPYVEVKLG-----NYKGITKHLEKNQNPVWNQIFAFSKER---L--------QSSLL 103 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~kT~~i~~t~nP~Wne~f~f~~~~---~--------~~~~L 103 (782)
..|.+.|+++.+++........|-||++.+- .++.+|+++++|..|.|+|.|.+.+.. . ....+
T Consensus 367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~ 446 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGK 446 (523)
T ss_pred hHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCe
Confidence 3577888888888765434456789988872 267899999999999999999999864 1 24569
Q ss_pred EEEEEeCCCC--CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEec
Q 003975 104 EVTVKDKDIG--KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMG 165 (782)
Q Consensus 104 ~i~V~d~d~~--~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~ 165 (782)
.|++|++..+ +|.++|.|.+.|.-|..... ....++|.+. .+.+.|.|.+++.+.
T Consensus 447 kfeifhkggf~rSdkl~gt~nikle~Len~ce-----i~e~~~l~DG--RK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 447 KFEIFHKGGFNRSDKLTGTGNIKLEILENMCE-----ICEYLPLKDG--RKAVGGKLEVKVRIR 503 (523)
T ss_pred eEEEeeccccccccceeceeeeeehhhhcccc-----hhhceecccc--ccccCCeeEEEEEEe
Confidence 9999999988 99999999999999876532 4556788774 334689999888765
No 248
>PLN02964 phosphatidylserine decarboxylase
Probab=97.50 E-value=0.00013 Score=83.43 Aligned_cols=88 Identities=24% Similarity=0.329 Sum_probs=73.3
Q ss_pred ceeEEEEEEEEeecCCCCccCCCCCCCcEEEE-EECCEEEeecccCCCCCCeeccEEEEEeeCC-CceEEEEEEeCCcCC
Q 003975 365 SIGTLELGILSAKNLMQMKSKDGKLTDAYCVA-KYGNKWIRTRTILDTLAPRWNEQYTWDVYDP-CTVITIGVFDNCYVN 442 (782)
Q Consensus 365 ~~g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v-~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~-~~~l~i~v~d~~~~~ 442 (782)
-.|...+++++|+ |+. +|+|+.+ .+|.+.+||.+.++|.||+||+...|.|... -...+|.|||.+.++
T Consensus 52 ~~~~~~~~~~~~~----~~~-----~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 122 (644)
T PLN02964 52 FSGIALLTLVGAE----MKF-----KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLS 122 (644)
T ss_pred ccCeEEEEeehhh----hcc-----CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCC
Confidence 4689999999998 321 4777765 6688999999999999999999999998753 234699999999887
Q ss_pred CCCCCCCCCccEEEEEEcccccCCc
Q 003975 443 GSKDDAKDQRIGKVRIRLSTLETDR 467 (782)
Q Consensus 443 ~~~~~~~d~~lG~~~i~l~~l~~~~ 467 (782)
+++++|.+.++|.++...+
T Consensus 123 ------~n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 123 ------KNTLVGYCELDLFDFVTQE 141 (644)
T ss_pred ------HHHhhhheeecHhhccHHH
Confidence 9999999999998886543
No 249
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.00012 Score=75.78 Aligned_cols=110 Identities=22% Similarity=0.281 Sum_probs=88.3
Q ss_pred CceeEEEEEEEEeecCCCCccCCCCCC-CcEEEEEE-CC----EEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEe
Q 003975 364 GSIGTLELGILSAKNLMQMKSKDGKLT-DAYCVAKY-GN----KWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFD 437 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~-~~----~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d 437 (782)
...|.+.|.|++|++|..+.-. +.. +|||+|++ ++ .+.+|+...+|++|-+.++..|.-..+...|.+.||-
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~--k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~g 343 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGS--KSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWG 343 (405)
T ss_pred cccCceeEEEEecccccccCCc--ccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEec
Confidence 3478999999999999976321 223 99999998 22 2588999999999999899999888888999999997
Q ss_pred CCcCCCCCCCCCCCccEEEEEEcccccCCc-eEEEEEeeeecCC
Q 003975 438 NCYVNGSKDDAKDQRIGKVRIRLSTLETDR-IYTHYYPLLLLTP 480 (782)
Q Consensus 438 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~-~~~~w~~L~~~~~ 480 (782)
.-. .-..+.|+|.++|-+.+|.... ....||+|....+
T Consensus 344 dyg-----Rmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgsss 382 (405)
T KOG2060|consen 344 DYG-----RMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSSS 382 (405)
T ss_pred ccc-----ccchHHHhhHHHHHhhhhccccccceeeeeccCCcc
Confidence 421 2237889999999999998765 7899999986443
No 250
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.30 E-value=0.0002 Score=74.72 Aligned_cols=117 Identities=24% Similarity=0.372 Sum_probs=93.1
Q ss_pred eEEEEEEEEeecCCCCccCCCCCC-CcEEEEEE---C--CEEEeecccCCCCCCeeccEEEEEeeC-C-----------C
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLT-DAYCVAKY---G--NKWIRTRTILDTLAPRWNEQYTWDVYD-P-----------C 428 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~---~--~~~~rT~~~~~t~~P~wne~~~f~v~~-~-----------~ 428 (782)
-.|++.|.++.+++.. .|... |-||++++ . .+..+|.+++.|.+|.|+|.|.+.+.. + .
T Consensus 367 ~elel~ivrg~~~pvp---~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr 443 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVP---GGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKR 443 (523)
T ss_pred hHhHHHHhhcccCCCC---CCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHh
Confidence 3677888899888753 12223 99999987 2 356899999999999999999999975 2 1
Q ss_pred ceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCc-CcEEEEEEEE
Q 003975 429 TVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKN-NGELHLALRF 495 (782)
Q Consensus 429 ~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~-~G~i~l~~~~ 495 (782)
.-+.|++|++..|. .+|.++|.+.|.|..|++.-.....|+|.+ |.+. .|+|.+++++
T Consensus 444 ~g~kfeifhkggf~-----rSdkl~gt~nikle~Len~cei~e~~~l~D----GRK~vGGkLevKvRi 502 (523)
T KOG3837|consen 444 LGKKFEIFHKGGFN-----RSDKLTGTGNIKLEILENMCEICEYLPLKD----GRKAVGGKLEVKVRI 502 (523)
T ss_pred cCeeEEEeeccccc-----cccceeceeeeeehhhhcccchhhceeccc----cccccCCeeEEEEEE
Confidence 26899999987653 389999999999999999888888999985 4332 6899999886
No 251
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.16 E-value=0.00064 Score=55.62 Aligned_cols=87 Identities=13% Similarity=0.196 Sum_probs=63.7
Q ss_pred EEEEEEeecCCCCCC-CCCCCcEEEEEE--CC-eEeeeecccCCCCCCcccceeEEEecCC--CCCeEEEEEEEccCCCC
Q 003975 205 RVFVFEAQDLVPSDK-GRAPDACVRIQL--GN-QLRVTRPSHVRSVNPVWNEEHMFVASEP--FEDLIIVTVEDRIRPGK 278 (782)
Q Consensus 205 ~V~V~~a~~L~~~~~-~~~~dpyv~v~l--~~-~~~~T~~~~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~~~~~~ 278 (782)
-++++.|+||.-... ...+.-|++-.+ .. ...+|+... +..||.|+|+|.|.+... ....|.|.|+. ...+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rr-gs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~R 78 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKE-GSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPR 78 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhc-CCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCc
Confidence 478899999875443 334556776555 22 346666666 499999999999987543 45588889988 4567
Q ss_pred CceeEEEEEeCCCccc
Q 003975 279 DEILGRELIPVRNVPQ 294 (782)
Q Consensus 279 d~~iG~~~i~l~~l~~ 294 (782)
.+.||.|.+.++++-.
T Consensus 79 Ke~iG~~sL~l~s~ge 94 (103)
T cd08684 79 KRTIGECSLSLRTLST 94 (103)
T ss_pred cceeeEEEeecccCCH
Confidence 8899999999998764
No 252
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.0018 Score=67.34 Aligned_cols=111 Identities=26% Similarity=0.346 Sum_probs=88.0
Q ss_pred ccccceeEEEEEEEEeeCCCCCCC-CCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEE
Q 003975 34 DLVELMHYLCVNVVKARNLPVMDV-SGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTV 107 (782)
Q Consensus 34 ~~~~~~~~L~V~v~~a~~L~~~d~-~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V 107 (782)
++....|.|.|.|++|++|..+.. ...++|||+|++-+ .+.+|+...+|..|-+.+...|.-.. ....|.++|
T Consensus 263 ~~~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp-~~k~Lq~tv 341 (405)
T KOG2060|consen 263 ALMDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSP-PGKYLQGTV 341 (405)
T ss_pred hhhcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCC-CccEEEEEE
Confidence 366778999999999999986643 33789999999843 26789999999999888888877654 478899999
Q ss_pred Ee-CCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCC
Q 003975 108 KD-KDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKK 149 (782)
Q Consensus 108 ~d-~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
|. +... .+.|+|.+.+-+.+|..... ..-.||+|....
T Consensus 342 ~gdygRmd~k~fmg~aqi~l~eL~ls~~----~~igwyKlfgss 381 (405)
T KOG2060|consen 342 WGDYGRMDHKSFMGVAQIMLDELNLSSS----PVIGWYKLFGSS 381 (405)
T ss_pred eccccccchHHHhhHHHHHhhhhccccc----cceeeeeccCCc
Confidence 96 4455 88899999999999876532 345799998754
No 253
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.08 E-value=0.027 Score=64.58 Aligned_cols=95 Identities=23% Similarity=0.285 Sum_probs=74.6
Q ss_pred EEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eEeeeecccCCCCCCcccce-eEEE-ecCCCCCeEEEEEEE
Q 003975 202 YYLRVFVFEAQDLVPSDKGRAPDACVRIQLGN-------QLRVTRPSHVRSVNPVWNEE-HMFV-ASEPFEDLIIVTVED 272 (782)
Q Consensus 202 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~-------~~~~T~~~~~~t~nP~wne~-f~f~-v~~~~~~~l~i~V~d 272 (782)
+.+.|+|++++-|..++ ...||.|.+-+ ..++|+++..++.||+|+|. |.|. |.-+.-..|+|.||+
T Consensus 703 ~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye 778 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE 778 (1189)
T ss_pred eeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence 46999999999997765 45899999943 45889999888999999975 7774 445567789999999
Q ss_pred ccCCCCCceeEEEEEeCCCcccccCCCCCCCCceEEccCC
Q 003975 273 RIRPGKDEILGRELIPVRNVPQRHETTKLPDPRWFNLHKP 312 (782)
Q Consensus 273 ~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 312 (782)
. ...+||+-.+|++.+.. .-+.+.|...
T Consensus 779 E----ggK~ig~RIlpvd~l~~--------GYrhv~LRse 806 (1189)
T KOG1265|consen 779 E----GGKFIGQRILPVDGLNA--------GYRHVCLRSE 806 (1189)
T ss_pred c----CCceeeeeccchhcccC--------cceeEEecCC
Confidence 6 46799999999988863 3444566554
No 254
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.60 E-value=0.1 Score=48.73 Aligned_cols=125 Identities=14% Similarity=0.181 Sum_probs=81.6
Q ss_pred eEEEEEEEEeecCCCCcc-CCCCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCC--------------Cce
Q 003975 367 GTLELGILSAKNLMQMKS-KDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDP--------------CTV 430 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~-~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~--------------~~~ 430 (782)
-.|.++|+.++-....-. ..+... --++-+.+++++++|+.+.-+.+|.|+|.|-|++... ++.
T Consensus 9 ~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~p 88 (156)
T PF15627_consen 9 RYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDP 88 (156)
T ss_pred eEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCc
Confidence 366677766663321100 001111 3344556799999999999999999999999988532 458
Q ss_pred EEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceE--EEEEeeeecCCCCCCcCcEEEEEEEEEE
Q 003975 431 ITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIY--THYYPLLLLTPSGLKNNGELHLALRFTC 497 (782)
Q Consensus 431 l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~--~~w~~L~~~~~~g~~~~G~i~l~~~~~~ 497 (782)
|.+-|.-.|..+ ...++|.-.++-..+...... ..-..|........-..|-|++++++.|
T Consensus 89 ihivli~~d~~~------~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP 151 (156)
T PF15627_consen 89 IHIVLIRTDPSG------ETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLP 151 (156)
T ss_pred eEEEEEEecCCC------ceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeec
Confidence 899998887644 448999999999998655433 3334443322211124799999988743
No 255
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.58 E-value=0.17 Score=47.36 Aligned_cols=96 Identities=18% Similarity=0.273 Sum_probs=71.3
Q ss_pred CceEEEEEEEEEeecCCCCCCC--CCCCc--EEEEEECCeEeeeecccCCCCCCcccceeEEEecCCC------------
Q 003975 199 PKLYYLRVFVFEAQDLVPSDKG--RAPDA--CVRIQLGNQLRVTRPSHVRSVNPVWNEEHMFVASEPF------------ 262 (782)
Q Consensus 199 p~~~~L~V~V~~a~~L~~~~~~--~~~dp--yv~v~l~~~~~~T~~~~~~t~nP~wne~f~f~v~~~~------------ 262 (782)
|...+|.+.|..++-....-.. +..+. .+-+.+++|.++|+.+.. +.+|.|+|.|-|.+....
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~-~~eP~f~e~Flf~l~~~~~~~~~~~~~lls 84 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPC-ACEPDFNEEFLFELPRDSFGAGSTATTLLS 84 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCccc-ccCCCCCCcEEEEecccccccccchhHhhc
Confidence 4456799999998765432211 23333 455555899999999998 999999999999886442
Q ss_pred -CCeEEEEEEEccCCCCCceeEEEEEeCCCcccc
Q 003975 263 -EDLIIVTVEDRIRPGKDEILGRELIPVRNVPQR 295 (782)
Q Consensus 263 -~~~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~~ 295 (782)
.+.+.+.|.-.|..+...++|+..+++..+..+
T Consensus 85 ~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s 118 (156)
T PF15627_consen 85 ISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCS 118 (156)
T ss_pred CCCceEEEEEEecCCCceEeeeeceehHHHHhcc
Confidence 336788887777777779999999999888753
No 256
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.56 E-value=0.066 Score=61.58 Aligned_cols=112 Identities=21% Similarity=0.288 Sum_probs=81.1
Q ss_pred eeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-------eEeeeccccCC-CCCccccE-EEEEe-ccCCCCeEEEEEE
Q 003975 39 MHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-------YKGITKHLEKN-QNPVWNQI-FAFSK-ERLQSSLLEVTVK 108 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-------~~~kT~~i~~t-~nP~Wne~-f~f~~-~~~~~~~L~i~V~ 108 (782)
.+.+.|+|++|.=|..++ ...||+|.+-| ..++|+++.++ .||+|+|. |.|.- --+.-..|+|-||
T Consensus 702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 357899999999887654 45899999854 35789998876 59999985 66652 2233577999999
Q ss_pred eCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEec
Q 003975 109 DKDIGKDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMG 165 (782)
Q Consensus 109 d~d~~~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~ 165 (782)
+.. ..+||+-.+++..|..+- +...|....+.......|.+.+...
T Consensus 778 eEg---gK~ig~RIlpvd~l~~GY--------rhv~LRse~Nqpl~lp~Lfv~i~~k 823 (1189)
T KOG1265|consen 778 EEG---GKFIGQRILPVDGLNAGY--------RHVCLRSESNQPLTLPALFVYIVLK 823 (1189)
T ss_pred ccC---CceeeeeccchhcccCcc--------eeEEecCCCCCccccceeEEEEEee
Confidence 984 579999999999997652 3457777665543344555555443
No 257
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=95.32 E-value=0.061 Score=50.25 Aligned_cols=47 Identities=23% Similarity=0.398 Sum_probs=33.8
Q ss_pred HHHHHHHHH---HHHHHhhccccccCchhhHHHHHHHHHHHHccchhHHHH
Q 003975 573 FQRIVELLS---AICRWFNDICTWRNPVETALLHVLFLTLVFYPELILPTI 620 (782)
Q Consensus 573 ~~rl~~~~~---~~~~~~~~~~~W~~p~~t~~~~~~~~~~~~~~~l~~p~~ 620 (782)
..|++.++. ..+..++.+++|++|..|.++.+++++++.- -+++|+=
T Consensus 68 a~rvQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avv-ly~vP~r 117 (156)
T PF08372_consen 68 AGRVQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVV-LYFVPFR 117 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHH-HHHhhHH
Confidence 344444444 7788999999999999999998887776544 2345553
No 258
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.11 E-value=0.16 Score=48.16 Aligned_cols=101 Identities=18% Similarity=0.224 Sum_probs=69.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCe----EeeeccccCCCCCccccEEEEEec--c-CCCCeEEEEEEeCC
Q 003975 41 YLCVNVVKARNLPVMDVSGSLDPYVEVKL--GNY----KGITKHLEKNQNPVWNQIFAFSKE--R-LQSSLLEVTVKDKD 111 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~----~~kT~~i~~t~nP~Wne~f~f~~~--~-~~~~~L~i~V~d~d 111 (782)
.++|+|+++.++...+ .+|-||++.+ |++ ...|+.+.. .++.|||...|++. + +.+..|.|.||+..
T Consensus 9 ~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~ 84 (158)
T cd08398 9 NLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVK 84 (158)
T ss_pred CeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence 5889999999988643 4578888765 553 234555543 68999999999864 3 34688999999975
Q ss_pred CC-----CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEecc
Q 003975 112 IG-----KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGT 166 (782)
Q Consensus 112 ~~-----~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~ 166 (782)
.. ....+|.+.+.|-+... . ..+|...+.+|..+
T Consensus 85 ~~~~~k~~~~~iG~~ni~LFd~~~--------------------~-Lr~G~~~L~lW~~~ 123 (158)
T cd08398 85 GRKGAKEEHCPLAWGNINLFDYTD--------------------T-LVSGKMALNLWPVP 123 (158)
T ss_pred cccCCCCceEEEEEEEEEEECCCC--------------------h-hhCCCEEEEEEcCC
Confidence 42 22468888887766321 1 12678888887654
No 259
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.01 E-value=0.14 Score=49.34 Aligned_cols=85 Identities=18% Similarity=0.261 Sum_probs=59.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCe----EeeeccccCCCCCccccEEEEEec--c-CCCCeEEEEEEeCC
Q 003975 41 YLCVNVVKARNLPVMDVSGSLDPYVEVKL--GNY----KGITKHLEKNQNPVWNQIFAFSKE--R-LQSSLLEVTVKDKD 111 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~----~~kT~~i~~t~nP~Wne~f~f~~~--~-~~~~~L~i~V~d~d 111 (782)
.++|+|+++.++... ....+-||++.+ |++ ..+|+.+..+.++.|||.+.|++. + +.+..|.|.||+..
T Consensus 9 ~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 9 KFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 589999999999862 234566777644 654 346766665678999999999864 3 34788999999965
Q ss_pred CC-----------------CCceeEEEEEEccc
Q 003975 112 IG-----------------KDDFVGRVSLDLSQ 127 (782)
Q Consensus 112 ~~-----------------~d~~lG~~~v~l~~ 127 (782)
.. .+..||.+.+.|-+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred ccccccccccccccccccCcceEEEEEeEEEEc
Confidence 32 13566776666555
No 260
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=94.81 E-value=0.91 Score=42.27 Aligned_cols=115 Identities=21% Similarity=0.230 Sum_probs=79.4
Q ss_pred eEEEEEEEEeecCCCCccCCCCCCCcEEEEEECCEE---Eeeccc-CCCCCCeeccEEEEEeeC---C------CceEEE
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKW---IRTRTI-LDTLAPRWNEQYTWDVYD---P------CTVITI 433 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~~~---~rT~~~-~~t~~P~wne~~~f~v~~---~------~~~l~i 433 (782)
-.+.+.|++..+++.. +...||+...|+.. ..|... .....-.|||.|.+++.- . ...+.|
T Consensus 7 f~~~l~i~~l~~~p~~------~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~ 80 (143)
T PF10358_consen 7 FQFDLTIHELENLPSS------NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF 80 (143)
T ss_pred EEEEEEEEEeECcCCC------CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence 3778899999998851 12566777666653 444433 345677899999998752 1 237899
Q ss_pred EEEeCCcCCCCCCCCCCCccEEEEEEcccccC--CceEEEEEeeeecCCCCCCcCcEEEEEEEEEE
Q 003975 434 GVFDNCYVNGSKDDAKDQRIGKVRIRLSTLET--DRIYTHYYPLLLLTPSGLKNNGELHLALRFTC 497 (782)
Q Consensus 434 ~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~--~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~~~ 497 (782)
.|+....-+ +...||.+.|+|++... ......-++|... .+....|++.+.+..
T Consensus 81 ~v~~~~~~~------~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~----~~~~a~L~isi~~~~ 136 (143)
T PF10358_consen 81 SVFEVDGSG------KKKVLGKVSINLAEYANEDEEPITVRLLLKKC----KKSNATLSISISLSE 136 (143)
T ss_pred EEEEecCCC------ccceEEEEEEEHHHhhCcCCCcEEEEEeCccC----CCCCcEEEEEEEEEE
Confidence 998874211 23699999999999977 3567778888642 234578888887754
No 261
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=94.80 E-value=0.17 Score=48.85 Aligned_cols=87 Identities=17% Similarity=0.190 Sum_probs=60.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE----eeeecccCCCCCCcccceeEEEec---CCCCCeEEEEEEEc
Q 003975 203 YLRVFVFEAQDLVPSDKGRAPDACVRIQL--GNQL----RVTRPSHVRSVNPVWNEEHMFVAS---EPFEDLIIVTVEDR 273 (782)
Q Consensus 203 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l--~~~~----~~T~~~~~~t~nP~wne~f~f~v~---~~~~~~l~i~V~d~ 273 (782)
.++|+|+.+.++... ....+-||++.+ |++. ..|+.+.- ..++.|||.+.|++. -|.+..|.|+||+.
T Consensus 9 ~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~-~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 9 KFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSG-KNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCC-CCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 389999999999862 234667777655 6654 34544442 567999999999763 34577999999986
Q ss_pred cCCC----------------CCceeEEEEEeCCCc
Q 003975 274 IRPG----------------KDEILGRELIPVRNV 292 (782)
Q Consensus 274 ~~~~----------------~d~~iG~~~i~l~~l 292 (782)
.... .+..||.+.++|-+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 5321 246888888887653
No 262
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=94.57 E-value=0.24 Score=46.93 Aligned_cols=84 Identities=19% Similarity=0.160 Sum_probs=60.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeEe----eeecccCCCCCCcccceeEEEec---CCCCCeEEEEEEEcc
Q 003975 204 LRVFVFEAQDLVPSDKGRAPDACVRIQL--GNQLR----VTRPSHVRSVNPVWNEEHMFVAS---EPFEDLIIVTVEDRI 274 (782)
Q Consensus 204 L~V~V~~a~~L~~~~~~~~~dpyv~v~l--~~~~~----~T~~~~~~t~nP~wne~f~f~v~---~~~~~~l~i~V~d~~ 274 (782)
++|.|+++.++...+ .+|-||++.+ |++.. .|+.+. ..++.|||...|++. -+.+..|.|+||+..
T Consensus 10 ~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~--~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~ 84 (158)
T cd08398 10 LRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVP--CSNPRWNEWLDYDIYIPDLPRSARLCLSICSVK 84 (158)
T ss_pred eEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccC--CCCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence 899999999987643 3688888866 55432 344333 468999999999764 335779999999975
Q ss_pred CCC----CCceeEEEEEeCCCc
Q 003975 275 RPG----KDEILGRELIPVRNV 292 (782)
Q Consensus 275 ~~~----~d~~iG~~~i~l~~l 292 (782)
..+ ....+|.+.++|-+-
T Consensus 85 ~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 85 GRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred cccCCCCceEEEEEEEEEEECC
Confidence 421 235799999998763
No 263
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=94.52 E-value=0.011 Score=57.19 Aligned_cols=60 Identities=12% Similarity=0.144 Sum_probs=19.1
Q ss_pred HHHHHhhHHHHHHhcccccChhhHHHHHHHHHHHHHHHhhchhhhhhheeeeecccCCCC
Q 003975 700 MVGDLASQVERAQAILCWRDLRATFIFLIFSFIWAVFSYVTPFEVVAVLIGLYMLRHPRF 759 (782)
Q Consensus 700 ~l~~~a~~~e~~~n~~~w~~p~~s~~~~~~l~~~~~~~~~vP~r~i~l~~g~~~~r~P~~ 759 (782)
....++..+..++.++.|++|..|..++++|++.+.+..+++...++.+..+..+.=|.+
T Consensus 89 ~~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~l 148 (169)
T PF02453_consen 89 VAEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKL 148 (169)
T ss_dssp CCCCCCHHHHHHHCCCHCT-TTGGG-----------------------------------
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHH
Confidence 344556667888999999999999999999999999999888877776655554444443
No 264
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=94.13 E-value=0.41 Score=45.46 Aligned_cols=93 Identities=23% Similarity=0.263 Sum_probs=66.7
Q ss_pred CCCCcEEEEEE--CCe----EeeeccccCCCCCccccEEEEEec--c-CCCCeEEEEEEeCCCC-CCceeEEEEEEcccc
Q 003975 59 GSLDPYVEVKL--GNY----KGITKHLEKNQNPVWNQIFAFSKE--R-LQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQV 128 (782)
Q Consensus 59 g~~dPyv~v~~--~~~----~~kT~~i~~t~nP~Wne~f~f~~~--~-~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l 128 (782)
..+|-||++.+ |++ ..+|+.+.-+..+.|||...|++. + +.+..|.|+|||.... +...+|.++++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 45678888866 443 236666666677899999999874 3 3467899999998765 677999999887664
Q ss_pred CCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEecccCCccc
Q 003975 129 PLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQADESF 172 (782)
Q Consensus 129 ~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~~~d~~~ 172 (782)
. + .| ..|...+.+|....+|...
T Consensus 108 ~-g------------~L--------r~G~~~l~lw~~~~~d~~~ 130 (159)
T cd08397 108 D-G------------TL--------RRGRQKLRVWPDVEADGSI 130 (159)
T ss_pred C-C------------cE--------ecCCEEEEEEeCCCCCCcc
Confidence 2 1 11 2688888988877666543
No 265
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=94.02 E-value=1.2 Score=41.55 Aligned_cols=118 Identities=19% Similarity=0.291 Sum_probs=78.5
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe---EeeeccccCC-CCCccccEEEEEec--------cCCCCeEEEEE
Q 003975 40 HYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNY---KGITKHLEKN-QNPVWNQIFAFSKE--------RLQSSLLEVTV 107 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~---~~kT~~i~~t-~nP~Wne~f~f~~~--------~~~~~~L~i~V 107 (782)
..+.|+|.+..+++. ...--||+..-++. ..+|+..... ..-.|||.|.+.+. ..+...+.|.|
T Consensus 7 f~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v 82 (143)
T PF10358_consen 7 FQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV 82 (143)
T ss_pred EEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence 457899999999886 22344555555554 2455544433 35799999998753 13456788999
Q ss_pred EeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEeccc
Q 003975 108 KDKDIG-KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGTQ 167 (782)
Q Consensus 108 ~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~~ 167 (782)
+..... +...+|.+.++|+++..... .....-++|..... ....|.+++.+...
T Consensus 83 ~~~~~~~~k~~lG~~~inLaey~~~~~---~~~~~~~~l~~~~~---~~a~L~isi~~~~~ 137 (143)
T PF10358_consen 83 FEVDGSGKKKVLGKVSINLAEYANEDE---EPITVRLLLKKCKK---SNATLSISISLSEL 137 (143)
T ss_pred EEecCCCccceEEEEEEEHHHhhCcCC---CcEEEEEeCccCCC---CCcEEEEEEEEEEC
Confidence 887543 33699999999999987421 12445667776522 35788888877644
No 266
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=93.81 E-value=0.56 Score=44.53 Aligned_cols=87 Identities=23% Similarity=0.312 Sum_probs=59.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCe----EeeeccccCCCCCccccEEEEEec--c-CCCCeEEEEEEeCC
Q 003975 41 YLCVNVVKARNLPVMDVSGSLDPYVEVKL--GNY----KGITKHLEKNQNPVWNQIFAFSKE--R-LQSSLLEVTVKDKD 111 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~----~~kT~~i~~t~nP~Wne~f~f~~~--~-~~~~~L~i~V~d~d 111 (782)
.+.|++....++...+ ....+-||++.+ |++ ...|+......++.|||...|++. + +.+..|.|.||+.+
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 5778888888876521 233556666654 554 234544444478999999999863 3 34688999999976
Q ss_pred CC---CCceeEEEEEEcccc
Q 003975 112 IG---KDDFVGRVSLDLSQV 128 (782)
Q Consensus 112 ~~---~d~~lG~~~v~l~~l 128 (782)
.. ++..||.+.++|-+.
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred cCCCCcceEEEEEeEEeEcc
Confidence 54 357999998887764
No 267
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=93.47 E-value=0.45 Score=45.15 Aligned_cols=87 Identities=25% Similarity=0.343 Sum_probs=59.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE----eeeecccCCCCCCcccceeEEEec---CCCCCeEEEEEEEcc
Q 003975 204 LRVFVFEAQDLVPSDKGRAPDACVRIQL--GNQL----RVTRPSHVRSVNPVWNEEHMFVAS---EPFEDLIIVTVEDRI 274 (782)
Q Consensus 204 L~V~V~~a~~L~~~~~~~~~dpyv~v~l--~~~~----~~T~~~~~~t~nP~wne~f~f~v~---~~~~~~l~i~V~d~~ 274 (782)
++|.+....+....+ ....+-||++.+ |++. ..|..... ..++.|||...|++. -+.+..|.|+||+.+
T Consensus 10 ~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~-~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 10 LRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPF-STSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred eEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcC-CCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 778888888776521 223567777755 5542 23333322 368999999999753 345779999999986
Q ss_pred CCC--CCceeEEEEEeCCCc
Q 003975 275 RPG--KDEILGRELIPVRNV 292 (782)
Q Consensus 275 ~~~--~d~~iG~~~i~l~~l 292 (782)
..+ .+..||.+.++|-+.
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred cCCCCcceEEEEEeEEeEcc
Confidence 544 568999999998764
No 268
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=93.46 E-value=0.79 Score=38.32 Aligned_cols=64 Identities=30% Similarity=0.346 Sum_probs=49.6
Q ss_pred CCcEEEEEECC-eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCCCCceeEEEEEEccccC
Q 003975 61 LDPYVEVKLGN-YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDFVGRVSLDLSQVP 129 (782)
Q Consensus 61 ~dPyv~v~~~~-~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~~d~~lG~~~v~l~~l~ 129 (782)
++-.+.+++.+ ...+|.-... .+..|++.|.+.++. +..|+|.||=+|. ..+-|...+.|.+..
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~LdR--sRELEI~VywrD~--RslCav~~lrLEd~~ 73 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELER--SRELEIAVYWRDW--RSLCAVKFLKLEDER 73 (98)
T ss_pred cceEEEEEEcCeEEeecccccc-ccccccceeEEEeec--ccEEEEEEEEecc--hhhhhheeeEhhhhc
Confidence 57889999987 5788876643 689999999999986 5779999987764 456677777777743
No 269
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=93.41 E-value=0.2 Score=51.07 Aligned_cols=114 Identities=21% Similarity=0.259 Sum_probs=75.9
Q ss_pred CceeEEEEEEEEeecCCCCccCCCCC-C-CcEEEEEECCE-EEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCc
Q 003975 364 GSIGTLELGILSAKNLMQMKSKDGKL-T-DAYCVAKYGNK-WIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCY 440 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~-~-dpyv~v~~~~~-~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~ 440 (782)
...|.|.+++++++||.-.... +| + +-||++.+..+ ..||.+......-.|.|.|..++... ..+.+-||.|+.
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~--kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~-~vl~~lvySW~p 124 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQ--KGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI-EVLHYLVYSWPP 124 (442)
T ss_pred cccceEEEEEecccccccChhc--cCceeeeeeeeeecccCccccccccCCCCccchhhceeecccc-eeeeEEEeecCc
Confidence 3469999999999999865421 23 3 99999999764 67888777777778999999988764 788888998874
Q ss_pred CCCCCCCCCCC--ccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 441 VNGSKDDAKDQ--RIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 441 ~~~~~~~~~d~--~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
-. .++ ..| -|.+..+... .-++-+.|.. ...|++.+++.+
T Consensus 125 q~------RHKLC~~g--~l~~~~v~rq-spd~~~Al~l------ePrgq~~~r~~~ 166 (442)
T KOG1452|consen 125 QR------RHKLCHLG--LLEAFVVDRQ-SPDRVVALYL------EPRGQPPLRLPL 166 (442)
T ss_pred hh------hccccccc--hhhhhhhhhc-CCcceeeeec------ccCCCCceeccc
Confidence 21 222 244 3334433321 1133333332 235888888776
No 270
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=92.91 E-value=0.34 Score=46.04 Aligned_cols=67 Identities=19% Similarity=0.227 Sum_probs=51.0
Q ss_pred CcEEEEEE--CCEE----EeecccCCCCCCeeccEEEEEeeC---C-CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEc
Q 003975 391 DAYCVAKY--GNKW----IRTRTILDTLAPRWNEQYTWDVYD---P-CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRL 460 (782)
Q Consensus 391 dpyv~v~~--~~~~----~rT~~~~~t~~P~wne~~~f~v~~---~-~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l 460 (782)
|-||.+.+ |++. .+|+.+.-+..+.|||...|+|.- | .+.|.|+|||.+.-+ ....||.+.++|
T Consensus 31 ~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~------~~~~vg~~~~~l 104 (159)
T cd08397 31 DLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTG------KAVPFGGTTLSL 104 (159)
T ss_pred CEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCC------CceEEEEEEEee
Confidence 77887755 6654 466666556788999999999863 3 679999999986422 567999999999
Q ss_pred ccc
Q 003975 461 STL 463 (782)
Q Consensus 461 ~~l 463 (782)
-+-
T Consensus 105 Fd~ 107 (159)
T cd08397 105 FNK 107 (159)
T ss_pred ECC
Confidence 885
No 271
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=92.88 E-value=0.26 Score=50.27 Aligned_cols=83 Identities=13% Similarity=0.103 Sum_probs=65.7
Q ss_pred eccccceeEEEEEEEEeeCCCCCC--CCCCCCcEEEEEECCe-EeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEe
Q 003975 33 YDLVELMHYLCVNVVKARNLPVMD--VSGSLDPYVEVKLGNY-KGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKD 109 (782)
Q Consensus 33 ~~~~~~~~~L~V~v~~a~~L~~~d--~~g~~dPyv~v~~~~~-~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d 109 (782)
.+++...|.|.++++.+++|.... .+-+-+-||++....+ +.+|.+.....-=.|.|+|..++.+ ...+.+-||.
T Consensus 44 l~~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvyS 121 (442)
T KOG1452|consen 44 LRLVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYS 121 (442)
T ss_pred eeeecccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc--ceeeeEEEee
Confidence 357778899999999999997543 3456789999999875 5678777777777899999998875 4678999999
Q ss_pred CCCC-CCce
Q 003975 110 KDIG-KDDF 117 (782)
Q Consensus 110 ~d~~-~d~~ 117 (782)
++.- ++++
T Consensus 122 W~pq~RHKL 130 (442)
T KOG1452|consen 122 WPPQRRHKL 130 (442)
T ss_pred cCchhhccc
Confidence 8876 5554
No 272
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=92.28 E-value=0.49 Score=45.69 Aligned_cols=90 Identities=23% Similarity=0.257 Sum_probs=63.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeEe----eeeccc--C-CCCCCcccceeEEEec---CCCCCeEEEEE
Q 003975 203 YLRVFVFEAQDLVPSDKGRAPDACVRIQL--GNQLR----VTRPSH--V-RSVNPVWNEEHMFVAS---EPFEDLIIVTV 270 (782)
Q Consensus 203 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l--~~~~~----~T~~~~--~-~t~nP~wne~f~f~v~---~~~~~~l~i~V 270 (782)
.++|+|..+.+++........|-||++.+ |++.. .|+... + -...+.|||...|.+. -+.+..|.|++
T Consensus 9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl 88 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL 88 (171)
T ss_pred cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence 38899999999988765556788888866 65442 333211 1 1235779999999763 34577999999
Q ss_pred EEccCCC---------CCceeEEEEEeCCCc
Q 003975 271 EDRIRPG---------KDEILGRELIPVRNV 292 (782)
Q Consensus 271 ~d~~~~~---------~d~~iG~~~i~l~~l 292 (782)
|+....+ .+..||.+.++|-+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 89 YGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEecCCccccccccccceEEEEEeEeeEcc
Confidence 9876543 457899999988664
No 273
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=92.09 E-value=1.1 Score=43.36 Aligned_cols=106 Identities=25% Similarity=0.351 Sum_probs=70.9
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCeE----eeecccc--C--CCCCccccEEEEEec--c-CCCCeEEEE
Q 003975 40 HYLCVNVVKARNLPVMDVSGSLDPYVEVKL--GNYK----GITKHLE--K--NQNPVWNQIFAFSKE--R-LQSSLLEVT 106 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~~----~kT~~i~--~--t~nP~Wne~f~f~~~--~-~~~~~L~i~ 106 (782)
..+.|+|.++.+++........|-||.+.+ |++. ..|+... + ...+.|||...|++. + +.+..|.|.
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 368899999999987765456788888765 5542 3454322 1 235789999999864 2 346889999
Q ss_pred EEeCCCC----------CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEEEecc
Q 003975 107 VKDKDIG----------KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWMGT 166 (782)
Q Consensus 107 V~d~d~~----------~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~~~ 166 (782)
+|+.... .+..||.+.++|-+.. |. ...|...+.+|...
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~--------------------~~-L~~G~~~L~lW~~~ 136 (171)
T cd04012 88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFR--------------------GV-LRQGSLLLGLWPPS 136 (171)
T ss_pred EEEEecCCccccccccccceEEEEEeEeeEcch--------------------hh-hccCCEEEEeccCC
Confidence 9996643 2457777777765532 11 13678888887653
No 274
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=91.89 E-value=1 Score=43.52 Aligned_cols=69 Identities=19% Similarity=0.217 Sum_probs=45.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE---eeeecccCCCCCCcccceeEEEec---CCCCCeEEEEEEEcc
Q 003975 204 LRVFVFEAQDLVPSDKGRAPDACVRIQL--GNQL---RVTRPSHVRSVNPVWNEEHMFVAS---EPFEDLIIVTVEDRI 274 (782)
Q Consensus 204 L~V~V~~a~~L~~~~~~~~~dpyv~v~l--~~~~---~~T~~~~~~t~nP~wne~f~f~v~---~~~~~~l~i~V~d~~ 274 (782)
++|+|..+.. +..+......-||++.+ |++. .+|+...- +.++.|||...|++. -+....|.|+||+..
T Consensus 12 friki~~~~~-~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~-~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 12 FRVKILGIDI-PVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPF-TEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred EEEEEEeecc-cCcCCCCceEEEEEEEEEECCeecccceeeccCC-CCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 7888888863 33333333446666644 5543 25555544 678999999989864 334779999999863
No 275
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=90.55 E-value=3 Score=40.30 Aligned_cols=92 Identities=17% Similarity=0.167 Sum_probs=57.8
Q ss_pred EEEEEEEEeecCCCCccCCCCCC-CcEEEEEE--CCEE---EeecccCCCCCCeeccEEEEEeeC---C-CceEEEEEEe
Q 003975 368 TLELGILSAKNLMQMKSKDGKLT-DAYCVAKY--GNKW---IRTRTILDTLAPRWNEQYTWDVYD---P-CTVITIGVFD 437 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~--~~~~---~rT~~~~~t~~P~wne~~~f~v~~---~-~~~l~i~v~d 437 (782)
.++|+|.++.++.. + .... .-||++.+ |++. .+|....-+.++.|||-+.|++.- | .+.|.|+||+
T Consensus 11 ~friki~~~~~~~~-~---~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~ 86 (178)
T cd08399 11 KFRVKILGIDIPVL-P---RNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYC 86 (178)
T ss_pred CEEEEEEeecccCc-C---CCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEE
Confidence 67788888874332 1 1112 45666533 6553 366666667789999999998863 3 6799999999
Q ss_pred CCcCCC----------CCCCCCCCccEEEEEEcccc
Q 003975 438 NCYVNG----------SKDDAKDQRIGKVRIRLSTL 463 (782)
Q Consensus 438 ~~~~~~----------~~~~~~d~~lG~~~i~l~~l 463 (782)
...-.. ...+..+..||.+.+.|-+-
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~ 122 (178)
T cd08399 87 GKAPALSSKKSAESPSSESKGKHQLLYYVNLLLIDH 122 (178)
T ss_pred EecCcccccccccccccccccccceEEEEEEEEEcC
Confidence 632110 00122466788888888773
No 276
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=89.79 E-value=2.5 Score=39.32 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=39.6
Q ss_pred eecccCCC-CCCeeccEEEEEeeC---C-CceEEEEEEeCCcCCCCCCCCCC----CccEEEEEEcccc
Q 003975 404 RTRTILDT-LAPRWNEQYTWDVYD---P-CTVITIGVFDNCYVNGSKDDAKD----QRIGKVRIRLSTL 463 (782)
Q Consensus 404 rT~~~~~t-~~P~wne~~~f~v~~---~-~~~l~i~v~d~~~~~~~~~~~~d----~~lG~~~i~l~~l 463 (782)
.|....-+ .++.|||.++|++.- | .+.|.|+||+.+.-. .+ ..||.+.++|-+-
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~------~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKK------KSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECST------TT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCC------ccccceeEEEEEEEEeECC
Confidence 56655555 799999999999852 3 679999999976532 22 6899999999886
No 277
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=89.59 E-value=0.17 Score=59.15 Aligned_cols=103 Identities=17% Similarity=0.237 Sum_probs=81.5
Q ss_pred CcEEEEEECC-EEEeecccCCC-CCCeeccEEEEEeeCCCceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCce
Q 003975 391 DAYCVAKYGN-KWIRTRTILDT-LAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRI 468 (782)
Q Consensus 391 dpyv~v~~~~-~~~rT~~~~~t-~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~ 468 (782)
++|+.+.+.. ...+|....+. .+|.|.+.|...+..+...+++.+-+.+..| ....+|.+.++...+..+..
T Consensus 139 e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G------~s~~w~~v~~s~~~~~~~~~ 212 (887)
T KOG1329|consen 139 ENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPG------WSKRWGRVKISFLQYCSGHR 212 (887)
T ss_pred cchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCcccc------ceeEEEEeccchhhhhcccc
Confidence 8999999966 45788888877 6999999998888888889999999988764 57899999999999999999
Q ss_pred EEEEEeeeecCCCCCCcCcEEEEEEEEEEcc
Q 003975 469 YTHYYPLLLLTPSGLKNNGELHLALRFTCTA 499 (782)
Q Consensus 469 ~~~w~~L~~~~~~g~~~~G~i~l~~~~~~~~ 499 (782)
...|+++.....+...+.-.+.+.+.|.+..
T Consensus 213 ~~~~~~Il~~d~~~~~~~~~~~~~~~~~~~~ 243 (887)
T KOG1329|consen 213 IGGWFPILDNDGKPHQKGSNESLRLGFTPME 243 (887)
T ss_pred ccceeeeeccCCccccCCcccceEEeeEeec
Confidence 9999999875553323323455556665543
No 278
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=88.93 E-value=3.4 Score=40.14 Aligned_cols=40 Identities=18% Similarity=0.293 Sum_probs=33.2
Q ss_pred EeeeccccCCCCCccccEEEEEec--cCCCCeEEEEEEeCCC
Q 003975 73 KGITKHLEKNQNPVWNQIFAFSKE--RLQSSLLEVTVKDKDI 112 (782)
Q Consensus 73 ~~kT~~i~~t~nP~Wne~f~f~~~--~~~~~~L~i~V~d~d~ 112 (782)
.++|.+.+.+.+|.|+|++.+.+. ......|.|+.++...
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~ 95 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCST 95 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeee
Confidence 468999999999999999999875 4457889999988543
No 279
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=87.92 E-value=4 Score=37.94 Aligned_cols=74 Identities=23% Similarity=0.322 Sum_probs=50.5
Q ss_pred eeccccCC-CCCccccEEEEEec--c-CCCCeEEEEEEeCCCC-CC----ceeEEEEEEccccCCCCCCCCCCCCEEEEe
Q 003975 75 ITKHLEKN-QNPVWNQIFAFSKE--R-LQSSLLEVTVKDKDIG-KD----DFVGRVSLDLSQVPLRVPPDSPLAPQWYRL 145 (782)
Q Consensus 75 kT~~i~~t-~nP~Wne~f~f~~~--~-~~~~~L~i~V~d~d~~-~d----~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L 145 (782)
.|+...-+ .++.|||.+.|++. + +.+..|.|.||+.+.. .+ ..||.+.++|-+.... |
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~~~-------------L 89 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYRGQ-------------L 89 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TTSB-------------B
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCCCc-------------c
Confidence 66666666 79999999999863 3 3478899999998776 44 6999999887776221 1
Q ss_pred ccCCCCcccceEEEEEEEecccCC
Q 003975 146 EDKKGDQTTKGEIMLAVWMGTQAD 169 (782)
Q Consensus 146 ~~~~g~~~~~G~l~l~~~~~~~~d 169 (782)
..|...+.+|-....+
T Consensus 90 --------~~G~~~L~lW~~~~~~ 105 (142)
T PF00792_consen 90 --------RQGPQKLSLWPDEEPD 105 (142)
T ss_dssp --------EEEEEEEE-EET-TTS
T ss_pred --------cCCCEEEEEEcCCCCc
Confidence 3688888887765443
No 280
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=86.87 E-value=3.8 Score=35.55 Aligned_cols=70 Identities=20% Similarity=0.272 Sum_probs=48.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCe----EeeeccccCCCCCccccEEEEEec--c-CCCCeEEEEEEeCC
Q 003975 42 LCVNVVKARNLPVMDVSGSLDPYVEVKL--GNY----KGITKHLEKNQNPVWNQIFAFSKE--R-LQSSLLEVTVKDKD 111 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~----~~kT~~i~~t~nP~Wne~f~f~~~--~-~~~~~L~i~V~d~d 111 (782)
+.+++..+.+.........++-||++.+ |++ ...|+.+.-...+.|||...|++. + +.+..|.|.+|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 5677777777765543333577888865 554 235665555567999999999864 3 34688999999864
No 281
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=86.27 E-value=7.5 Score=32.69 Aligned_cols=82 Identities=15% Similarity=0.147 Sum_probs=57.0
Q ss_pred CcEEEEEECCE-EEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccCCceE
Q 003975 391 DAYCVAKYGNK-WIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLETDRIY 469 (782)
Q Consensus 391 dpyv~v~~~~~-~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~ 469 (782)
+..|++++.++ ..+|.-.. ..+..|++.|.+++.. +..|.|+||=.|. ..+=|-..+.|.+...
T Consensus 10 eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR-sRELEI~VywrD~---------RslCav~~lrLEd~~~---- 74 (98)
T cd08687 10 EVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER-SRELEIAVYWRDW---------RSLCAVKFLKLEDERH---- 74 (98)
T ss_pred ceEEEEEEcCeEEeeccccc-cccccccceeEEEeec-ccEEEEEEEEecc---------hhhhhheeeEhhhhcc----
Confidence 78899999885 56676543 3577799999999864 4799999987663 3455666777777322
Q ss_pred EEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 470 THYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 470 ~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
..-.+| ..+|.+..++.|
T Consensus 75 ~~~~~l--------epqg~l~~ev~f 92 (98)
T cd08687 75 EVQLDM--------EPQLCLVAELTF 92 (98)
T ss_pred cceecc--------ccccEEEEEEEe
Confidence 222333 336888888877
No 282
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=84.44 E-value=6.1 Score=34.24 Aligned_cols=70 Identities=23% Similarity=0.189 Sum_probs=45.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE----eeeecccCCCCCCcccceeEEEec---CCCCCeEEEEEEEcc
Q 003975 204 LRVFVFEAQDLVPSDKGRAPDACVRIQL--GNQL----RVTRPSHVRSVNPVWNEEHMFVAS---EPFEDLIIVTVEDRI 274 (782)
Q Consensus 204 L~V~V~~a~~L~~~~~~~~~dpyv~v~l--~~~~----~~T~~~~~~t~nP~wne~f~f~v~---~~~~~~l~i~V~d~~ 274 (782)
+.+.+....+.........++-||++.+ |++. ..|+.+.- ...+.|||...|++. -+.+..|.|++|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~-~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPF-FPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCC-CCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 5566666666655443333578888866 5543 24444332 556899999999764 345779999999864
No 283
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=84.29 E-value=7.2 Score=38.09 Aligned_cols=40 Identities=20% Similarity=0.269 Sum_probs=33.7
Q ss_pred EeeeccccCCCCCccccEEEEEec--cCCCCeEEEEEEeCCC
Q 003975 73 KGITKHLEKNQNPVWNQIFAFSKE--RLQSSLLEVTVKDKDI 112 (782)
Q Consensus 73 ~~kT~~i~~t~nP~Wne~f~f~~~--~~~~~~L~i~V~d~d~ 112 (782)
.++|-+.+.+.+|.|+|++.+.+. ......|.|++++...
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~ 95 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSS 95 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeecc
Confidence 578999999999999999999875 4467899999988654
No 284
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=83.56 E-value=4.9 Score=35.33 Aligned_cols=94 Identities=15% Similarity=0.194 Sum_probs=51.4
Q ss_pred EEEEEECCEEEeecccCCCCCCeeccEEEEEeeCC--------CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEccccc
Q 003975 393 YCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDP--------CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLE 464 (782)
Q Consensus 393 yv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~--------~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~ 464 (782)
||.+.+-...-.|..+....+|.+|.+-.|.|... ...+.|+++..-. .....||.++|++..+.
T Consensus 2 Fct~dFydfEtq~Tpvv~G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-------~d~~tla~~~i~l~~ll 74 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVRGLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-------SDFETLAAGQISLRPLL 74 (107)
T ss_dssp EEEE-STT---EE---EESSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-------S-EEEEEEEEE--SHHH
T ss_pred EEEEEeeceeeecccceeCCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-------CCeEEEEEEEeechhhh
Confidence 67777765444444444599999999999988743 3489999998642 14678999999999986
Q ss_pred C--CceEEEEEeeeecCCCCCCcCcEEEEEEEEE
Q 003975 465 T--DRIYTHYYPLLLLTPSGLKNNGELHLALRFT 496 (782)
Q Consensus 465 ~--~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~~ 496 (782)
. +.....-..|.... |. .-|.|...+++.
T Consensus 75 ~~~~~~i~~~~~l~g~~--~~-~~g~l~y~~rl~ 105 (107)
T PF11618_consen 75 ESNGERIHGSATLVGVS--GE-DFGTLEYWIRLR 105 (107)
T ss_dssp H--S--EEEEEEE-BSS--S--TSEEEEEEEEEE
T ss_pred cCCCceEEEEEEEeccC--CC-eEEEEEEEEEec
Confidence 3 22455666665322 22 569999988864
No 285
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=83.36 E-value=25 Score=33.73 Aligned_cols=87 Identities=11% Similarity=0.176 Sum_probs=57.3
Q ss_pred CCcEEEEEECCeE-eeeecccC-CCCCCcccceeEEEecCCCCCeEEEEEEEccCCCCCceeEEEEEeCCCcccccCCCC
Q 003975 223 PDACVRIQLGNQL-RVTRPSHV-RSVNPVWNEEHMFVASEPFEDLIIVTVEDRIRPGKDEILGRELIPVRNVPQRHETTK 300 (782)
Q Consensus 223 ~dpyv~v~l~~~~-~~T~~~~~-~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~ 300 (782)
..-|+++.++++. .+|+...- ..-.-.|||.|.+.+.. .-..|.|+||.... ..+..|+++.+++-...... ...
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~-~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~~~-~~~ 113 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITR-WPESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVHT-STD 113 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEec-CCCEEEEEEEEccC-ccceEEEEEEeeCCCCcccc-ccc
Confidence 4678999998865 44444321 13334668889888866 47789999999876 68899999999986544221 111
Q ss_pred CCCCceEEccCC
Q 003975 301 LPDPRWFNLHKP 312 (782)
Q Consensus 301 ~~~~~w~~L~~~ 312 (782)
.....|+.+...
T Consensus 114 ~~~~~~~eFsS~ 125 (168)
T PF15625_consen 114 NVPLEEYEFSSD 125 (168)
T ss_pred CCceEeEEEcCC
Confidence 114566665443
No 286
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=82.36 E-value=4.8 Score=39.34 Aligned_cols=58 Identities=9% Similarity=0.121 Sum_probs=34.9
Q ss_pred EEeecccCCCCCCeeccEEEEEeeCC---CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEccc
Q 003975 402 WIRTRTILDTLAPRWNEQYTWDVYDP---CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLST 462 (782)
Q Consensus 402 ~~rT~~~~~t~~P~wne~~~f~v~~~---~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~ 462 (782)
.+.|.+.+++.+|.|+|+|.+.+..+ ..-|.|++++-..-. ....+..+|.+.+||.+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~---~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKE---SKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SS---SS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeecccc---ccCccceeEEEEEEeee
Confidence 47888899999999999999988753 568999999976421 11122799999999888
No 287
>PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains [].
Probab=81.85 E-value=1.7 Score=35.08 Aligned_cols=43 Identities=9% Similarity=0.133 Sum_probs=33.0
Q ss_pred eCCCcccccCCCCCCCCceEEccCCCcccccccccccccccceEEEEEEeccC
Q 003975 288 PVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCLEAG 340 (782)
Q Consensus 288 ~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~~~~ 340 (782)
++..++.+ +++...++|..|.++.+. ....+|++++++++.+.
T Consensus 2 DlgtVY~q--P~H~~~~KW~~L~dP~D~--------~~G~kGYlKv~i~Vlg~ 44 (72)
T PF08151_consen 2 DLGTVYNQ--PDHQFYRKWALLTDPDDT--------SAGVKGYLKVDISVLGP 44 (72)
T ss_pred ceeeeecC--CCCeeEeceEEecCCCCC--------ccCCceEEEEEEEEEcC
Confidence 45566655 789999999999998642 23456999999998765
No 288
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=80.69 E-value=4.1 Score=39.81 Aligned_cols=55 Identities=18% Similarity=0.115 Sum_probs=32.7
Q ss_pred EeeeccccCCCCCccccEEEEEec--cCCCCeEEEEEEeCCCC--C--CceeEEEEEEccc
Q 003975 73 KGITKHLEKNQNPVWNQIFAFSKE--RLQSSLLEVTVKDKDIG--K--DDFVGRVSLDLSQ 127 (782)
Q Consensus 73 ~~kT~~i~~t~nP~Wne~f~f~~~--~~~~~~L~i~V~d~d~~--~--d~~lG~~~v~l~~ 127 (782)
...|.+.+.+.+|.|+|+|.+.+. ......|.|++++...- + +..+|.+.++|.+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 467888889999999999999875 33467899999996653 2 2577777666655
No 289
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=75.91 E-value=31 Score=36.20 Aligned_cols=112 Identities=15% Similarity=0.241 Sum_probs=79.4
Q ss_pred ceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEeeeccccCCCCC--ccccEEEEEeccCCCCeEEEEEEeCCCCCC
Q 003975 38 LMHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGITKHLEKNQNP--VWNQIFAFSKERLQSSLLEVTVKDKDIGKD 115 (782)
Q Consensus 38 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~kT~~i~~t~nP--~Wne~f~f~~~~~~~~~L~i~V~d~d~~~d 115 (782)
+...|-|.|.+-.++.. ...-|+.+..|....+|..+.-+..- .-++.....+.. ....|++.||-....+.
T Consensus 56 RkF~LLVeI~EI~~i~k-----~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQ-cDnTLkI~lfKKkLvkk 129 (508)
T PTZ00447 56 RTFYLLVKINEIFNINK-----YKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQ-CDETLRVDLFTTKLTKK 129 (508)
T ss_pred ceeeEEEEehhhhcccc-----ceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeee-cCceEEEEEEeccccce
Confidence 56788899988776643 44789999999998888666544322 233444444544 36789999998877788
Q ss_pred ceeEEEEEEcc-ccCCCCCCCCCCCCEEEEeccCCCCcccceEEEEEE
Q 003975 116 DFVGRVSLDLS-QVPLRVPPDSPLAPQWYRLEDKKGDQTTKGEIMLAV 162 (782)
Q Consensus 116 ~~lG~~~v~l~-~l~~~~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~ 162 (782)
.-||.+.+++. +++.+.- ...+||-+.. .|.. .++|.+|+
T Consensus 130 ~hIgdI~InIn~dIIdk~F----PKnkWy~c~k-DGq~--~cRIqLSF 170 (508)
T PTZ00447 130 VHIGQIKIDINASVISKSF----PKNEWFVCFK-DGQE--ICKVQMSF 170 (508)
T ss_pred eEEEEEEecccHHHHhccC----CccceEEEec-CCce--eeeEEEEe
Confidence 99999999887 4444322 2678999954 4553 78888886
No 290
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=75.33 E-value=6 Score=38.53 Aligned_cols=56 Identities=14% Similarity=0.171 Sum_probs=40.7
Q ss_pred EEeecccCCCCCCeeccEEEEEeeC---CCceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcc
Q 003975 402 WIRTRTILDTLAPRWNEQYTWDVYD---PCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLS 461 (782)
Q Consensus 402 ~~rT~~~~~t~~P~wne~~~f~v~~---~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~ 461 (782)
.++|.+.++..+|.|||++.+.+.. +..-|.+++++...-. ......+|.+.+||-
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~----k~~~~pfg~s~lpL~ 112 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKD----KGEKKLFGFSFVPLM 112 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeecc----CCCCCceEEEEEeec
Confidence 4689999999999999999998874 3568999888854311 011256777777764
No 291
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=75.10 E-value=29 Score=36.42 Aligned_cols=110 Identities=10% Similarity=0.130 Sum_probs=77.8
Q ss_pred eeEEEEEEEEeecCCCCccCCCCCCCcEEEEEECCEEEeecccCCCCCC--eeccEEEEEeeCCCceEEEEEEeCCcCCC
Q 003975 366 IGTLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWIRTRTILDTLAP--RWNEQYTWDVYDPCTVITIGVFDNCYVNG 443 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~~~~rT~~~~~t~~P--~wne~~~f~v~~~~~~l~i~v~d~~~~~~ 443 (782)
.-.|-|.|.+..++.. ....|+.++.|...++|..+.-+..= .-.+.....+......|+|.||-....
T Consensus 57 kF~LLVeI~EI~~i~k-------~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLv-- 127 (508)
T PTZ00447 57 TFYLLVKINEIFNINK-------YKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLT-- 127 (508)
T ss_pred eeeEEEEehhhhcccc-------ceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEecccc--
Confidence 3467788888777653 22789999999999999766433222 334566666666678999999998654
Q ss_pred CCCCCCCCccEEEEEEccc--ccCCceEEEEEeeeecCCCCCCcCcEEEEEE
Q 003975 444 SKDDAKDQRIGKVRIRLST--LETDRIYTHYYPLLLLTPSGLKNNGELHLAL 493 (782)
Q Consensus 444 ~~~~~~d~~lG~~~i~l~~--l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~ 493 (782)
+..-||.+.|++.. +...-+-..||-+.. .+...++|.|++
T Consensus 128 -----kk~hIgdI~InIn~dIIdk~FPKnkWy~c~k----DGq~~cRIqLSF 170 (508)
T PTZ00447 128 -----KKVHIGQIKIDINASVISKSFPKNEWFVCFK----DGQEICKVQMSF 170 (508)
T ss_pred -----ceeEEEEEEecccHHHHhccCCccceEEEec----CCceeeeEEEEe
Confidence 67899999999887 344445688999963 333457777764
No 292
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=72.86 E-value=8 Score=33.97 Aligned_cols=95 Identities=11% Similarity=0.071 Sum_probs=51.2
Q ss_pred EEEEEECC-eEeeeccccCCCCCccccEEEEEecc-------CCCCeEEEEEEeCCCCCCceeEEEEEEccccCCCCCCC
Q 003975 64 YVEVKLGN-YKGITKHLEKNQNPVWNQIFAFSKER-------LQSSLLEVTVKDKDIGKDDFVGRVSLDLSQVPLRVPPD 135 (782)
Q Consensus 64 yv~v~~~~-~~~kT~~i~~t~nP~Wne~f~f~~~~-------~~~~~L~i~V~d~d~~~d~~lG~~~v~l~~l~~~~~~~ 135 (782)
||.+.+-+ +...|.++. +.||.+|-+-.+.+.. +++..+.++++..-......+|.+.+++.++......
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~~- 79 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNGE- 79 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S--
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCCc-
Confidence 56666655 456677665 8899999998888742 3467899999886644788999999999999854321
Q ss_pred CCCCCEEEEeccCCCCcccceEEEEEEEe
Q 003975 136 SPLAPQWYRLEDKKGDQTTKGEIMLAVWM 164 (782)
Q Consensus 136 ~~~~~~w~~L~~~~g~~~~~G~l~l~~~~ 164 (782)
....-..|.+.+|+ .-|.|...+.+
T Consensus 80 --~i~~~~~l~g~~~~--~~g~l~y~~rl 104 (107)
T PF11618_consen 80 --RIHGSATLVGVSGE--DFGTLEYWIRL 104 (107)
T ss_dssp ---EEEEEEE-BSSS---TSEEEEEEEEE
T ss_pred --eEEEEEEEeccCCC--eEEEEEEEEEe
Confidence 13334566666665 47888776654
No 293
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=72.23 E-value=21 Score=34.32 Aligned_cols=70 Identities=13% Similarity=0.172 Sum_probs=54.4
Q ss_pred CCCcEEEEEECCe-EeeeccccCCC--CCccccEEEEEeccCCCCeEEEEEEeCCCCCCceeEEEEEEccccCC
Q 003975 60 SLDPYVEVKLGNY-KGITKHLEKNQ--NPVWNQIFAFSKERLQSSLLEVTVKDKDIGKDDFVGRVSLDLSQVPL 130 (782)
Q Consensus 60 ~~dPyv~v~~~~~-~~kT~~i~~t~--nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~~d~~lG~~~v~l~~l~~ 130 (782)
...-|+++.++++ ..+|+...-+. .-.|||.|.+.+... -..|.++||......+..|+++.+++-....
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~-Pesi~l~i~E~~~~~~~~la~v~vpvP~~~~ 108 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRW-PESIKLEIYEKSGLSDRLLAEVFVPVPGSTV 108 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecC-CCEEEEEEEEccCccceEEEEEEeeCCCCcc
Confidence 4567999999985 56666554432 356799999999774 5789999999887889999999998776654
No 294
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=70.71 E-value=6.7 Score=45.04 Aligned_cols=64 Identities=25% Similarity=0.405 Sum_probs=45.6
Q ss_pred HHHHhhHHHHHHhcccccChhhHHHHHHHHHHHHHHHhhchhhhhhheeeeecccCCCCCCC-CCCch
Q 003975 701 VGDLASQVERAQAILCWRDLRATFIFLIFSFIWAVFSYVTPFEVVAVLIGLYMLRHPRFRSK-MPSVP 767 (782)
Q Consensus 701 l~~~a~~~e~~~n~~~w~~p~~s~~~~~~l~~~~~~~~~vP~r~i~l~~g~~~~r~P~~~~~-~~~~~ 767 (782)
+=-++.++-.+.-|-+|++|+.|+.|+++-+++.++=+++|.-+++|+. ++.+|..|.- .|+.+
T Consensus 105 ~v~~~~~~khi~RLrSW~eprRT~~fc~vYf~aW~~dll~p~~~~~L~~---li~~P~~r~~lFPpap 169 (642)
T PF11696_consen 105 VVGLAAFIKHIARLRSWREPRRTAAFCAVYFIAWLLDLLVPAFFAFLIA---LILSPPARSILFPPAP 169 (642)
T ss_pred HHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCcccccccCCCCC
Confidence 3344555566777889999999999999999999888888875555443 3346777653 44443
No 295
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=70.31 E-value=13 Score=36.43 Aligned_cols=59 Identities=8% Similarity=0.139 Sum_probs=42.6
Q ss_pred EEEeecccCCCCCCeeccEEEEEeeC---CCceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcc
Q 003975 401 KWIRTRTILDTLAPRWNEQYTWDVYD---PCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLS 461 (782)
Q Consensus 401 ~~~rT~~~~~t~~P~wne~~~f~v~~---~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~ 461 (782)
..++|.+.+...+|.|||++.+.+.. +..-|.+++++...-... ......+|.+.++|-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~k--d~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAK--DKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeecccccc--CCCCCceEEEEEeee
Confidence 45899999999999999999998873 466899999886431100 012356888777775
No 296
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=69.68 E-value=14 Score=35.82 Aligned_cols=62 Identities=8% Similarity=0.085 Sum_probs=43.3
Q ss_pred EEEeecccCCCCCCeeccEEEEEeeC---CCceEEEEEEeCCcCCCCCCCCCCCccEEEEEEccc
Q 003975 401 KWIRTRTILDTLAPRWNEQYTWDVYD---PCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLST 462 (782)
Q Consensus 401 ~~~rT~~~~~t~~P~wne~~~f~v~~---~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~ 462 (782)
..+.|.+.+++.+|.|+|++...++. +..-|.|+.++-+.-...++......+|.+.+||-+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 46788899999999999999998874 355899999985532100011224568887777765
No 297
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=66.85 E-value=30 Score=39.03 Aligned_cols=117 Identities=15% Similarity=0.322 Sum_probs=81.2
Q ss_pred EEEEEEEEeecCCCCccCCCCCCCcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCCCCCC
Q 003975 368 TLELGILSAKNLMQMKSKDGKLTDAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGSKDD 447 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~~~~ 447 (782)
.+.|.|.+.+||+.... +.=.||.+.+.|++.+|... ....|.|..+=.|.-..|-..+.+.+|-+..-- -.
T Consensus 342 smevvvmevqglksvap----nrivyctmevegeklqtdqa-easkp~wgtqgdfstthplpvvkvklftestgv---la 413 (1218)
T KOG3543|consen 342 SMEVVVMEVQGLKSVAP----NRIVYCTMEVEGEKLQTDQA-EASKPKWGTQGDFSTTHPLPVVKVKLFTESTGV---LA 413 (1218)
T ss_pred eeeEEEeeeccccccCC----CeeEEEEEEecccccccchh-hhcCCCCCcCCCcccCCCCceeEEEEEeeccee---EE
Confidence 67888999999985421 12689999999999988765 455799999988888888888999999876310 12
Q ss_pred CCCCccEEEEEEcccccCCceEEEEEeeeecCCCCCCcCcEEEEEEEE
Q 003975 448 AKDQRIGKVRIRLSTLETDRIYTHYYPLLLLTPSGLKNNGELHLALRF 495 (782)
Q Consensus 448 ~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
-.|.-||++.|.-..-.. ....|+.+....... ...=+|.|.++.
T Consensus 414 ledkelgrvil~ptpns~--ks~ewh~mtvpknsq-dqdlkiklavrm 458 (1218)
T KOG3543|consen 414 LEDKELGRVILQPTPNSA--KSPEWHTMTVPKNSQ-DQDLKIKLAVRM 458 (1218)
T ss_pred eechhhCeEEEecCCCCc--CCccceeeecCCCCc-CccceEEEEEec
Confidence 367889999886554333 236799887644321 122345555554
No 298
>PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains [].
Probab=66.33 E-value=11 Score=30.33 Aligned_cols=51 Identities=24% Similarity=0.258 Sum_probs=36.3
Q ss_pred EccccCCCCCCCCCCCCEEEEeccCCCCc-ccceEEEEEEEecccCCccccccc
Q 003975 124 DLSQVPLRVPPDSPLAPQWYRLEDKKGDQ-TTKGEIMLAVWMGTQADESFAEAW 176 (782)
Q Consensus 124 ~l~~l~~~~~~~~~~~~~w~~L~~~~g~~-~~~G~l~l~~~~~~~~d~~~~~~~ 176 (782)
++..+...+ ++....+|..|.++.... ..+|.|.+++....++|+.....+
T Consensus 2 DlgtVY~qP--~H~~~~KW~~L~dP~D~~~G~kGYlKv~i~Vlg~GD~~~~~~~ 53 (72)
T PF08151_consen 2 DLGTVYNQP--DHQFYRKWALLTDPDDTSAGVKGYLKVDISVLGPGDEPPVEKK 53 (72)
T ss_pred ceeeeecCC--CCeeEeceEEecCCCCCccCCceEEEEEEEEEcCCCcCCCCCC
Confidence 344455543 455788999999987543 378999999999888877554443
No 299
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=64.79 E-value=16 Score=35.50 Aligned_cols=52 Identities=19% Similarity=0.140 Sum_probs=34.9
Q ss_pred eeccccCCCCCccccEEEEEecc--CCCCeEEEEEEeCCCC------CCceeEEEEEEcc
Q 003975 75 ITKHLEKNQNPVWNQIFAFSKER--LQSSLLEVTVKDKDIG------KDDFVGRVSLDLS 126 (782)
Q Consensus 75 kT~~i~~t~nP~Wne~f~f~~~~--~~~~~L~i~V~d~d~~------~d~~lG~~~v~l~ 126 (782)
-|.++....+|.|+|+|.+.+.. .....|.|++++.... ....+|-+.++|-
T Consensus 55 ~~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~ 114 (178)
T cd08679 55 YTSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLM 114 (178)
T ss_pred EEEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEecc
Confidence 34444445999999999998752 2478899999997643 2445555554443
No 300
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=63.31 E-value=8.7 Score=41.98 Aligned_cols=43 Identities=23% Similarity=0.440 Sum_probs=29.5
Q ss_pred HHHHHHHHhhHH---HHHHhcccccChhhHHHHHHHHHHHHHHHhh
Q 003975 697 LQTMVGDLASQV---ERAQAILCWRDLRATFIFLIFSFIWAVFSYV 739 (782)
Q Consensus 697 vq~~l~~~a~~~---e~~~n~~~w~~p~~s~~~~~~l~~~~~~~~~ 739 (782)
+=..|+.+-.++ +++-++++|++|..|..+++++..+++..++
T Consensus 15 l~~~l~~~f~~~~~~d~vl~il~W~~p~~t~~~L~l~t~~~l~p~l 60 (359)
T PF06398_consen 15 LSSRLGPIFPFQLILDRVLRILTWTNPDYTLSFLLLYTFLCLNPYL 60 (359)
T ss_pred HHHHHHHhhHHHHHHHHHHHeEEeCCCCcchHHHHHHHHHHHHHHH
Confidence 444455555555 8889999999998877666666666655544
No 301
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=61.85 E-value=22 Score=34.35 Aligned_cols=40 Identities=13% Similarity=0.034 Sum_probs=32.9
Q ss_pred EeeeccccCCCCCccccEEEEEec--cCCCCeEEEEEEeCCC
Q 003975 73 KGITKHLEKNQNPVWNQIFAFSKE--RLQSSLLEVTVKDKDI 112 (782)
Q Consensus 73 ~~kT~~i~~t~nP~Wne~f~f~~~--~~~~~~L~i~V~d~d~ 112 (782)
...|.+...+.+|.|+|++.+.+. -.....|.|+.++...
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~ 96 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISC 96 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeec
Confidence 468999999999999999999875 3346789999998554
No 302
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=58.13 E-value=13 Score=40.96 Aligned_cols=46 Identities=13% Similarity=0.255 Sum_probs=34.7
Q ss_pred ccEEEEEEccc-ccCCceEEEEEeeeecCCCCCCcCcEEEEEEEEEEcc
Q 003975 452 RIGKVRIRLST-LETDRIYTHYYPLLLLTPSGLKNNGELHLALRFTCTA 499 (782)
Q Consensus 452 ~lG~~~i~l~~-l~~~~~~~~w~~L~~~~~~g~~~~G~i~l~~~~~~~~ 499 (782)
++|.+.|++.. +..+.....|||+.+....+ ...|.+ ++++++...
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~-~~~~~l-lk~~~~~~~ 47 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKS-VGEGLI-IKVSSEENF 47 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCC-cCcceE-EEEEeeece
Confidence 48999999999 77778889999999855433 234777 777775543
No 303
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=55.80 E-value=35 Score=33.22 Aligned_cols=39 Identities=18% Similarity=0.133 Sum_probs=32.7
Q ss_pred EeeeccccCCCCCccccEEEEEec--cCCCCeEEEEEEeCC
Q 003975 73 KGITKHLEKNQNPVWNQIFAFSKE--RLQSSLLEVTVKDKD 111 (782)
Q Consensus 73 ~~kT~~i~~t~nP~Wne~f~f~~~--~~~~~~L~i~V~d~d 111 (782)
...|.+...+.+|.|.|++.+.+. ......|.|+.|+..
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 568999999999999999998864 335678999999965
No 304
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=54.41 E-value=51 Score=32.13 Aligned_cols=62 Identities=8% Similarity=0.111 Sum_probs=43.6
Q ss_pred EEEeecccCCCCCCeeccEEEEEeeC---CCceEEEEEEeCCcCCCC---CCCCCCCccEEEEEEccc
Q 003975 401 KWIRTRTILDTLAPRWNEQYTWDVYD---PCTVITIGVFDNCYVNGS---KDDAKDQRIGKVRIRLST 462 (782)
Q Consensus 401 ~~~rT~~~~~t~~P~wne~~~f~v~~---~~~~l~i~v~d~~~~~~~---~~~~~d~~lG~~~i~l~~ 462 (782)
..+.|.+..++.+|.|+|++-..+.. +..-|.|+.++-+--... ........+|.+.+||-.
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 46888899999999999999888764 356899999996521100 001124568887777765
No 305
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=53.04 E-value=32 Score=41.08 Aligned_cols=85 Identities=20% Similarity=0.264 Sum_probs=68.4
Q ss_pred CCcEEEEEECCe-EeeeccccCC-CCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCC
Q 003975 61 LDPYVEVKLGNY-KGITKHLEKN-QNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSP 137 (782)
Q Consensus 61 ~dPyv~v~~~~~-~~kT~~i~~t-~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~ 137 (782)
.++|+.+.+... ..+|..+.+. .+|.|.+.|....... ...+.+.|.+.+.. .-..+|.+.++...+..+.
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~-~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~----- 211 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHK-AGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGH----- 211 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhcccccccc-ccEEEEeecCCccccceeEEEEeccchhhhhccc-----
Confidence 488999998764 4678888777 6999999998887654 57899999998877 4889999999999998853
Q ss_pred CCCEEEEeccCCCC
Q 003975 138 LAPQWYRLEDKKGD 151 (782)
Q Consensus 138 ~~~~w~~L~~~~g~ 151 (782)
....|+++.+.++.
T Consensus 212 ~~~~~~~Il~~d~~ 225 (887)
T KOG1329|consen 212 RIGGWFPILDNDGK 225 (887)
T ss_pred cccceeeeeccCCc
Confidence 36789998776654
No 306
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=52.36 E-value=68 Score=38.21 Aligned_cols=104 Identities=17% Similarity=0.273 Sum_probs=68.2
Q ss_pred eEEEEEEEEeecCCCCccCCCCCC-CcEEEEEE----CCEE----EeecccCCCCCCeeccEEEEEeeC---C-CceEEE
Q 003975 367 GTLELGILSAKNLMQMKSKDGKLT-DAYCVAKY----GNKW----IRTRTILDTLAPRWNEQYTWDVYD---P-CTVITI 433 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~----~~~~----~rT~~~~~t~~P~wne~~~f~v~~---~-~~~l~i 433 (782)
..++|+++++.++... .. |-+|.|.. |++. ..|.-+..+.+|.||+.++|++.. | .+.|-|
T Consensus 343 ~~frI~l~~is~~n~~------~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~ 416 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVNLP------ETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCL 416 (1076)
T ss_pred CceEEEEeeccccCCC------cccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhhee
Confidence 3688888888876432 23 66777654 5543 445555568899999999998874 2 557888
Q ss_pred EEEeCCc----------CCCCCCCCCCCccEEEEEEccc----ccCCceEEEEEeee
Q 003975 434 GVFDNCY----------VNGSKDDAKDQRIGKVRIRLST----LETDRIYTHYYPLL 476 (782)
Q Consensus 434 ~v~d~~~----------~~~~~~~~~d~~lG~~~i~l~~----l~~~~~~~~w~~L~ 476 (782)
.||---. .+..+.+..+..||.+.+.|-+ |..|+..-+-|+..
T Consensus 417 ~i~~v~~~~~s~~~s~~~~~kk~k~~~~plaWvN~~lfD~kd~LrtG~~~Lh~W~~~ 473 (1076)
T KOG0904|consen 417 AIYAVKAKAKSKKNSAESTKKKSKKEHCPLAWVNLMLFDHKDQLRTGEYVLHMWPSV 473 (1076)
T ss_pred eeeEeechhccccccchhhhhccccccCceEEEeeeeeechhhhhcCceEEEecCCC
Confidence 8876421 0011123466789999998877 46677666666644
No 307
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=50.62 E-value=5.2 Score=45.95 Aligned_cols=94 Identities=17% Similarity=0.159 Sum_probs=62.7
Q ss_pred CCCcEEEEEECC-eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCC
Q 003975 60 SLDPYVEVKLGN-YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDIG-KDDFVGRVSLDLSQVPLRVPPDSP 137 (782)
Q Consensus 60 ~~dPyv~v~~~~-~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~~-~d~~lG~~~v~l~~l~~~~~~~~~ 137 (782)
..+||+.|.+.- +...+.+...+..|.|+++|...+.. ...+.|.|+..... .+.+...+++..+++... .-
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~--~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~----~~ 100 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA--GGAKNIIVLLKSPDPKALSEAQLSLQEESQKLL----AL 100 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeeec--CCceEEEEEecCCcchhhHHHhHHHHHHHHHHH----hh
Confidence 458999888875 34466667889999999999999776 57799999988654 555555555444444321 11
Q ss_pred CCCEEEEeccCCCCcccceEEEEEEEecc
Q 003975 138 LAPQWYRLEDKKGDQTTKGEIMLAVWMGT 166 (782)
Q Consensus 138 ~~~~w~~L~~~~g~~~~~G~l~l~~~~~~ 166 (782)
...-|..++. .|++...+.+..
T Consensus 101 ~~~~w~~~~~-------~g~~~~~~~~~~ 122 (694)
T KOG0694|consen 101 EQRLWVLIEE-------LGTLLKPAALTG 122 (694)
T ss_pred hhhhcccccc-------ccceeeeecccC
Confidence 2345766443 477777766553
No 308
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=50.48 E-value=98 Score=33.77 Aligned_cols=109 Identities=14% Similarity=0.133 Sum_probs=64.5
Q ss_pred CcEEEEEECCEEEeecccCC----CCCC-e-eccEEEEEee--------CC------CceEEEEEEeCCcCCCCCCCCCC
Q 003975 391 DAYCVAKYGNKWIRTRTILD----TLAP-R-WNEQYTWDVY--------DP------CTVITIGVFDNCYVNGSKDDAKD 450 (782)
Q Consensus 391 dpyv~v~~~~~~~rT~~~~~----t~~P-~-wne~~~f~v~--------~~------~~~l~i~v~d~~~~~~~~~~~~d 450 (782)
..||+|++.+--.+|..+.- +.+| . -+-.-.|.+. .+ ...|+|.||--..-..-+-+...
T Consensus 37 pCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~~~ 116 (460)
T PF06219_consen 37 PCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGNSG 116 (460)
T ss_pred CeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCcccccccc
Confidence 67999999887767766531 1121 1 1122334331 11 25799999996531100012467
Q ss_pred CccEEEEEEcccccC-C---ceEEEEEeeeecCCCC-CCcCcEEEEEEEEEEcc
Q 003975 451 QRIGKVRIRLSTLET-D---RIYTHYYPLLLLTPSG-LKNNGELHLALRFTCTA 499 (782)
Q Consensus 451 ~~lG~~~i~l~~l~~-~---~~~~~w~~L~~~~~~g-~~~~G~i~l~~~~~~~~ 499 (782)
.+||+++|+|.---. + .....|..+-.....+ .+...+|||.++.+++.
T Consensus 117 klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpDP 170 (460)
T PF06219_consen 117 KLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPDP 170 (460)
T ss_pred eEEEEEEEEeccccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccCCC
Confidence 899999999874211 1 2357899997644322 22357899999887654
No 309
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=49.55 E-value=1.5e+02 Score=32.37 Aligned_cols=105 Identities=18% Similarity=0.277 Sum_probs=62.5
Q ss_pred CCCcEEEEEECCeEeeeccccCCC----CC-c---cccEEEEEecc---C--------CCCeEEEEEEeCCC-------C
Q 003975 60 SLDPYVEVKLGNYKGITKHLEKNQ----NP-V---WNQIFAFSKER---L--------QSSLLEVTVKDKDI-------G 113 (782)
Q Consensus 60 ~~dPyv~v~~~~~~~kT~~i~~t~----nP-~---Wne~f~f~~~~---~--------~~~~L~i~V~d~d~-------~ 113 (782)
.+..||+|++.+.-.+|..+.--. +| . ---.|+++-.+ + ....|+|.||.-.. .
T Consensus 35 sspCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~ 114 (460)
T PF06219_consen 35 SSPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGN 114 (460)
T ss_pred CCCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCcccccc
Confidence 456699999999655665554221 11 1 12345554221 1 12579999998432 1
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCEEEEeccCCCCc--ccceEEEEEEEec
Q 003975 114 KDDFVGRVSLDLSQVPLRVPPDSPLAPQWYRLEDKKGDQ--TTKGEIMLAVWMG 165 (782)
Q Consensus 114 ~d~~lG~~~v~l~~l~~~~~~~~~~~~~w~~L~~~~g~~--~~~G~l~l~~~~~ 165 (782)
+.++||.+.++|. +..........+.-|..+-..++.. ....+|++.+...
T Consensus 115 ~~klLG~v~vpld-l~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~E 167 (460)
T PF06219_consen 115 SGKLLGKVRVPLD-LKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAE 167 (460)
T ss_pred cceEEEEEEEEec-cccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEecc
Confidence 6789999999887 3322222234567899997764321 1357888887554
No 310
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=49.05 E-value=1.7e+02 Score=28.04 Aligned_cols=80 Identities=18% Similarity=0.175 Sum_probs=54.6
Q ss_pred EEEEEEEeecCCCCccCCCCCCCcEEEEEE--CC--------E-EEeecccCC-----CCCCeeccEEEEEeeC--C--C
Q 003975 369 LELGILSAKNLMQMKSKDGKLTDAYCVAKY--GN--------K-WIRTRTILD-----TLAPRWNEQYTWDVYD--P--C 428 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~--~~--------~-~~rT~~~~~-----t~~P~wne~~~f~v~~--~--~ 428 (782)
+.=.|..|++... .+-||+-.+ |. . ...|.+.+. ...-.||.-|.+.... + .
T Consensus 4 v~G~I~~a~~f~~--------~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gw 75 (168)
T PF07162_consen 4 VIGEIESAEGFEE--------DNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGW 75 (168)
T ss_pred EEEEEEEEECCCC--------CCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCC
Confidence 3446778886642 267888765 32 3 466666643 2345799888887764 2 3
Q ss_pred ceEEEEEEeCCcCCCCCCCCCCCccEEEEEEccc
Q 003975 429 TVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLST 462 (782)
Q Consensus 429 ~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~ 462 (782)
-.|.|+||..|.++ ++.+.|...+.|-.
T Consensus 76 P~L~l~V~~~D~~g------r~~~~GYG~~~lP~ 103 (168)
T PF07162_consen 76 PQLVLQVYSLDSWG------RDRVEGYGFCHLPT 103 (168)
T ss_pred ceEEEEEEEEcccC------CeEEeEEeEEEeCC
Confidence 48999999999887 88888887776643
No 311
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=48.69 E-value=1.1e+02 Score=34.98 Aligned_cols=99 Identities=19% Similarity=0.346 Sum_probs=68.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeeecccCCCCCCcccceeEEEecCCCCCeEEEEEEEccCC---CCC
Q 003975 203 YLRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIRP---GKD 279 (782)
Q Consensus 203 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~T~~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~---~~d 279 (782)
.+.|.|.+.++|.....+. =.||...+.+.+.+|.-.. ...|.|...-.|....+ -..+.+.+|..... -.|
T Consensus 342 smevvvmevqglksvapnr--ivyctmevegeklqtdqae--askp~wgtqgdfstthp-lpvvkvklftestgvlaled 416 (1218)
T KOG3543|consen 342 SMEVVVMEVQGLKSVAPNR--IVYCTMEVEGEKLQTDQAE--ASKPKWGTQGDFSTTHP-LPVVKVKLFTESTGVLALED 416 (1218)
T ss_pred eeeEEEeeeccccccCCCe--eEEEEEEecccccccchhh--hcCCCCCcCCCcccCCC-CceeEEEEEeecceeEEeec
Confidence 4788899999998765443 4799999999888887654 67899998888876555 34566666654321 246
Q ss_pred ceeEEEEEeCCCcccccCCCCCCCCceEEccCCC
Q 003975 280 EILGRELIPVRNVPQRHETTKLPDPRWFNLHKPS 313 (782)
Q Consensus 280 ~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 313 (782)
.-+|++.+... ++..-...|+...-+.
T Consensus 417 kelgrvil~pt-------pns~ks~ewh~mtvpk 443 (1218)
T KOG3543|consen 417 KELGRVILQPT-------PNSAKSPEWHTMTVPK 443 (1218)
T ss_pred hhhCeEEEecC-------CCCcCCccceeeecCC
Confidence 67787766433 2334467788776553
No 312
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=48.42 E-value=26 Score=41.56 Aligned_cols=16 Identities=13% Similarity=0.262 Sum_probs=11.7
Q ss_pred Hhhchhhhhhheeeee
Q 003975 737 SYVTPFEVVAVLIGLY 752 (782)
Q Consensus 737 ~~~vP~r~i~l~~g~~ 752 (782)
++|||.+|++|+.-.|
T Consensus 91 ~~~~p~~~~~~~~~~~ 106 (697)
T PF09726_consen 91 LFFIPVHWLFFAASTY 106 (697)
T ss_pred HHHHHHHHHHHHHhHH
Confidence 4558999998886544
No 313
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.26 E-value=78 Score=29.49 Aligned_cols=68 Identities=18% Similarity=0.155 Sum_probs=43.6
Q ss_pred CCCcEEEEEE--CCEEEeecc-----------cCCCCCC-eeccEEEEEeeC--C--CceEEEEEEeCCcCCCCCCCCCC
Q 003975 389 LTDAYCVAKY--GNKWIRTRT-----------ILDTLAP-RWNEQYTWDVYD--P--CTVITIGVFDNCYVNGSKDDAKD 450 (782)
Q Consensus 389 ~~dpyv~v~~--~~~~~rT~~-----------~~~t~~P-~wne~~~f~v~~--~--~~~l~i~v~d~~~~~~~~~~~~d 450 (782)
+.|.||+.+. |+.|.-|.- .++-.|| +||--++...+. | -..|.+.||..|.+| +|
T Consensus 25 ~~dv~~ky~~Vag~DW~~~~Gpqegvsq~s~~~r~~~~~iv~n~Pievt~KstsPygWPqivl~vfg~d~~G------~d 98 (187)
T KOG4027|consen 25 ESDVCVKYSTVAGGDWKIINGPQEGVSQSSFSFRGADNQIVINLPIEVTLKSTSPYGWPQIVLNVFGKDHSG------KD 98 (187)
T ss_pred CCceEEEEEEEecCCceeccCcccchhhheeccccCCCceEEecceEEEeccCCCCCCceEEEEEecCCcCC------cc
Confidence 4588998876 555533222 1122233 455555444443 3 348999999999887 89
Q ss_pred CccEEEEEEccc
Q 003975 451 QRIGKVRIRLST 462 (782)
Q Consensus 451 ~~lG~~~i~l~~ 462 (782)
...|...|++--
T Consensus 99 ~v~GYg~~hiP~ 110 (187)
T KOG4027|consen 99 CVTGYGMLHIPT 110 (187)
T ss_pred eeeeeeeEecCc
Confidence 999998887654
No 314
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=46.51 E-value=7.4 Score=44.78 Aligned_cols=92 Identities=13% Similarity=0.040 Sum_probs=60.6
Q ss_pred CcEEEEEECCEE-EeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCCcCCCCCCCCCCCccEEEEEEcccccC-Cce
Q 003975 391 DAYCVAKYGNKW-IRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLET-DRI 468 (782)
Q Consensus 391 dpyv~v~~~~~~-~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~-~~~ 468 (782)
|||+-|.+.-+. ..+.+.+.+..|.|++.|..+|.. ...+.|.|+.....+ .+.+...+++-.+++.. ...
T Consensus 29 ~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~-~~~~~i~v~~~~~~~------~~~~~a~~~~~~e~~k~~~~~ 101 (694)
T KOG0694|consen 29 QPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA-GGAKNIIVLLKSPDP------KALSEAQLSLQEESQKLLALE 101 (694)
T ss_pred hhhheeccceeecccccCCCCCCCchhhhheeeeeec-CCceEEEEEecCCcc------hhhHHHhHHHHHHHHHHHhhh
Confidence 899999886544 466678889999999999999654 478888999875433 44445555444444432 112
Q ss_pred EEEEEeeeecCCCCCCcCcEEEEEEEEEE
Q 003975 469 YTHYYPLLLLTPSGLKNNGELHLALRFTC 497 (782)
Q Consensus 469 ~~~w~~L~~~~~~g~~~~G~i~l~~~~~~ 497 (782)
...|.++.. .|++...+.+..
T Consensus 102 ~~~w~~~~~--------~g~~~~~~~~~~ 122 (694)
T KOG0694|consen 102 QRLWVLIEE--------LGTLLKPAALTG 122 (694)
T ss_pred hhhcccccc--------ccceeeeecccC
Confidence 345776543 466666665533
No 315
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=44.49 E-value=35 Score=27.20 Aligned_cols=38 Identities=18% Similarity=0.544 Sum_probs=24.5
Q ss_pred HHHhhccccc--cCchhhHHHHHHHHHHHHccchhHHHHHHHHH
Q 003975 584 CRWFNDICTW--RNPVETALLHVLFLTLVFYPELILPTIFLYLF 625 (782)
Q Consensus 584 ~~~~~~~~~W--~~p~~t~~~~~~~~~~~~~~~l~~p~~~l~l~ 625 (782)
-.|+..+..| ++| .-|+.++++|..|-+++..++-+-+
T Consensus 5 k~w~~~~v~~vAkdP----~~Fl~~vll~LtPlfiisa~lSwkL 44 (74)
T PF15086_consen 5 KAWASYIVEWVAKDP----YEFLTTVLLILTPLFIISAVLSWKL 44 (74)
T ss_pred HHHHHHHHHHHHcCh----HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4566677788 888 5566777777776555555544433
No 316
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=43.74 E-value=65 Score=31.16 Aligned_cols=54 Identities=17% Similarity=0.246 Sum_probs=37.0
Q ss_pred eeeecccCCCCCCcccceeEEEecCCC--CCeEEEEEEEccCC-----CCCceeEEEEEeCC
Q 003975 236 RVTRPSHVRSVNPVWNEEHMFVASEPF--EDLIIVTVEDRIRP-----GKDEILGRELIPVR 290 (782)
Q Consensus 236 ~~T~~~~~~t~nP~wne~f~f~v~~~~--~~~l~i~V~d~~~~-----~~d~~iG~~~i~l~ 290 (782)
.-+.++.. ..+|.|+|++...+.... ...|.|++++.... .....+|-+.+||-
T Consensus 54 ~~~sv~~~-~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~ 114 (178)
T cd08679 54 EYTSVVYY-HKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLM 114 (178)
T ss_pred eEEEEEEc-CCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEecc
Confidence 34445555 489999999988875443 55899999986532 23556777777664
No 317
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=43.18 E-value=2.6e+02 Score=26.73 Aligned_cols=80 Identities=18% Similarity=0.107 Sum_probs=53.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE----------CCe-EeeeecccCC----CCCCcccceeEEEecC--CC-CCe
Q 003975 204 LRVFVFEAQDLVPSDKGRAPDACVRIQL----------GNQ-LRVTRPSHVR----SVNPVWNEEHMFVASE--PF-EDL 265 (782)
Q Consensus 204 L~V~V~~a~~L~~~~~~~~~dpyv~v~l----------~~~-~~~T~~~~~~----t~nP~wne~f~f~v~~--~~-~~~ 265 (782)
+.-.|..|.+... .+-||+-.+ +.. ...|.+.+.. ...-.||.-|++.+.. +. -..
T Consensus 4 v~G~I~~a~~f~~------~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~ 77 (168)
T PF07162_consen 4 VIGEIESAEGFEE------DNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQ 77 (168)
T ss_pred EEEEEEEEECCCC------CCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCce
Confidence 4456677775532 467888777 123 4555555421 3446788877776543 32 358
Q ss_pred EEEEEEEccCCCCCceeEEEEEeC
Q 003975 266 IIVTVEDRIRPGKDEILGRELIPV 289 (782)
Q Consensus 266 l~i~V~d~~~~~~d~~iG~~~i~l 289 (782)
|.|+||..|..+++.+.|...+.+
T Consensus 78 L~l~V~~~D~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 78 LVLQVYSLDSWGRDRVEGYGFCHL 101 (168)
T ss_pred EEEEEEEEcccCCeEEeEEeEEEe
Confidence 999999999999999988776655
No 318
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=41.94 E-value=6.7 Score=44.25 Aligned_cols=190 Identities=13% Similarity=0.104 Sum_probs=100.9
Q ss_pred EEEEEEEeecCCCCC----CCCCCCcEEEEEECCeEeeeecccCCCCCCcccceeEEEecCCCCCeEEEEEEEccCCCCC
Q 003975 204 LRVFVFEAQDLVPSD----KGRAPDACVRIQLGNQLRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIRPGKD 279 (782)
Q Consensus 204 L~V~V~~a~~L~~~~----~~~~~dpyv~v~l~~~~~~T~~~~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~~~~~~d 279 (782)
.-.+++.|.++++.. ..-..++++...++.+.++|+.... +.+|+|||. .+...+.+.. ..-..
T Consensus 282 ~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~-~e~piyNe~-~~E~~~Fqsn----------~~l~~ 349 (975)
T KOG2419|consen 282 ALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDD-TEKPIYNED-EREDSDFQSN----------RYLGN 349 (975)
T ss_pred HHHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhcc-ccccccccc-ccccccchhh----------HHHhh
Confidence 334455555553221 1224689999999999999999987 999999997 5544332211 11234
Q ss_pred ceeEEEEEeCCCcccccCCCCCCCCceEEccCCCcccccccccccccccceEEEEEEeccCccccCCCcccCCCCCcccc
Q 003975 280 EILGRELIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKNKEKFSSKILISFCLEAGYHVFDESTHFSSDLQTSSK 359 (782)
Q Consensus 280 ~~iG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~ 359 (782)
.++|.+..++++-+... --+......+ ...++ .|
T Consensus 350 kiv~~~~~~lndS~A~f-~vq~~~sn~~-~~~pE--------------~~------------------------------ 383 (975)
T KOG2419|consen 350 KIVGYCELDLNDSYANF-VVQRAKSNFF-ISEPE--------------ST------------------------------ 383 (975)
T ss_pred hccccccccccchhhhh-hhhhhhcccc-ccCcc--------------cc------------------------------
Confidence 56777777776632110 0000000001 11110 01
Q ss_pred ccccCceeEEEEEEEEeecCCCCccCC--CCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCC--CceEEEE
Q 003975 360 SLRKGSIGTLELGILSAKNLMQMKSKD--GKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDP--CTVITIG 434 (782)
Q Consensus 360 ~~~~~~~g~l~v~v~~a~~L~~~~~~~--~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~--~~~l~i~ 434 (782)
.+...+..=.-.+|+.....+ ..-. ||+.++.+|...+.+.+.....+|..++.-.+.+.+- .-.+.|.
T Consensus 384 ------~~sfnl~~~a~sn~~a~r~~~S~T~~em~~~~~~~vG~~~~s~sie~~v~~~~c~~~~~~s~~d~~~~fk~sf~ 457 (975)
T KOG2419|consen 384 ------CKSFNLLDPASSNLPALRNRLSKTNYEMDPFIVIVVGSRFFSCSIEDPVETEECFAKRILSIVDYEEDFKLSFS 457 (975)
T ss_pred ------ceEEEeecCCcccchhhhhccCccccccCchhHhhhhhHHhhhhhhccccchhhhhhhcccccccccCceEeee
Confidence 111111111112222211111 1123 9999999998888888888888888887766666653 3366666
Q ss_pred EEeCCcCCCCCCCCCCCccEEEEEEcccc
Q 003975 435 VFDNCYVNGSKDDAKDQRIGKVRIRLSTL 463 (782)
Q Consensus 435 v~d~~~~~~~~~~~~d~~lG~~~i~l~~l 463 (782)
.++...+. -.+.+....+...++
T Consensus 458 ~~~~l~~~------F~~vvaa~~~~~~D~ 480 (975)
T KOG2419|consen 458 EFSDLSFA------FGNVVAANKLAWFDM 480 (975)
T ss_pred hHHHHHHH------HHHHHHhhhcchhhh
Confidence 66655432 234455545444444
No 319
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=41.08 E-value=72 Score=28.20 Aligned_cols=64 Identities=22% Similarity=0.260 Sum_probs=42.7
Q ss_pred CceEEEEEEeCCcCCCCCCCCCCCccEEEEEEccccc--------------CCceEEEEEeeeecCCCCCCcCcEEEEEE
Q 003975 428 CTVITIGVFDNCYVNGSKDDAKDQRIGKVRIRLSTLE--------------TDRIYTHYYPLLLLTPSGLKNNGELHLAL 493 (782)
Q Consensus 428 ~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~--------------~~~~~~~w~~L~~~~~~g~~~~G~i~l~~ 493 (782)
...|.+.+++-.. +.......+||.+.|++.+.. .......-|+|.+.. | ...|+|.+.+
T Consensus 28 ~~pl~i~~~~~~~---~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~--~-~~~G~I~l~i 101 (112)
T PF14924_consen 28 SFPLYIVVKKVPP---GFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDEN--G-NPVGEISLYI 101 (112)
T ss_pred CCceEEEEEecCC---CCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCC--C-ceeeeEEEEE
Confidence 3477887766432 000126678999999999863 223567788998633 2 3569999999
Q ss_pred EEEE
Q 003975 494 RFTC 497 (782)
Q Consensus 494 ~~~~ 497 (782)
|+++
T Consensus 102 RLsc 105 (112)
T PF14924_consen 102 RLSC 105 (112)
T ss_pred EEec
Confidence 9865
No 320
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=36.81 E-value=1.4e+02 Score=27.43 Aligned_cols=39 Identities=8% Similarity=0.196 Sum_probs=23.7
Q ss_pred hHHHHHHHHHhhhhhh-HHHHHHHHh-hHHHHHHhcccccC
Q 003975 681 DTVRMRYERLRSVGGQ-LQTMVGDLA-SQVERAQAILCWRD 719 (782)
Q Consensus 681 ~~l~~~~~~~~~~~~~-vq~~l~~~a-~~~e~~~n~~~w~~ 719 (782)
+++.+|+.+|+++.-. +.+.+...+ .....+++++++.-
T Consensus 51 ETl~ERl~aLkdi~P~~~R~~i~~~~~~~~~~~k~~~~~~g 91 (137)
T PF04281_consen 51 ETLLERLWALKDIFPPSVRNWISSTVSTTSSAVKSLFSFSG 91 (137)
T ss_pred ccHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3489999999999654 444443333 33344566666544
No 321
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=35.96 E-value=12 Score=35.70 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=0.0
Q ss_pred HHhcccccChhhHHHHHHHHHHHHHHH
Q 003975 711 AQAILCWRDLRATFIFLIFSFIWAVFS 737 (782)
Q Consensus 711 ~~n~~~w~~p~~s~~~~~~l~~~~~~~ 737 (782)
+++++.|+||..|..++.++.++..++
T Consensus 1 V~dll~W~~~~~S~~v~~~~~~~~~l~ 27 (169)
T PF02453_consen 1 VADLLLWRDPKKSGIVFGAILLFWLLF 27 (169)
T ss_dssp ---------------------------
T ss_pred CceeeEecCCCchHHHHHHHHHHHHHH
Confidence 467899999999987776666533333
No 322
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=33.09 E-value=1.8e+02 Score=35.54 Aligned_cols=49 Identities=8% Similarity=-0.029 Sum_probs=30.4
Q ss_pred ccccChhhHHHHHHHHHHHHHHHhh------------chhhhhhheeee--e-cccCCCCCCCCCCc
Q 003975 715 LCWRDLRATFIFLIFSFIWAVFSYV------------TPFEVVAVLIGL--Y-MLRHPRFRSKMPSV 766 (782)
Q Consensus 715 ~~w~~p~~s~~~~~~l~~~~~~~~~------------vP~r~i~l~~g~--~-~~r~P~~~~~~~~~ 766 (782)
+.-+||++-..++++++++++++.. +|. .....+. - ++.+|.|+.+ |+.
T Consensus 133 ~a~~DP~aLR~~~~l~lv~a~~~a~~~~~grla~Af~~~~--~~~~~~~r~daWVtPPaYTGk-PPi 196 (851)
T TIGR02302 133 LPIHDPWGLRALVVLLLVAAFAYSGEERSGRIMDAFDWKP--AMSPSTARIDAWVTPPVYTGR-API 196 (851)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHhCccccchHHHHhcCCC--ccCCCCCeeEEEeCCCCcCCC-CCE
Confidence 5779999998777777777776533 122 1111111 1 7889999976 444
No 323
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.19 E-value=1.3e+02 Score=30.43 Aligned_cols=37 Identities=14% Similarity=0.186 Sum_probs=25.8
Q ss_pred HHhhHHHHHHhcccccChhhHHHHHHHHHHHHHHHhh
Q 003975 703 DLASQVERAQAILCWRDLRATFIFLIFSFIWAVFSYV 739 (782)
Q Consensus 703 ~~a~~~e~~~n~~~w~~p~~s~~~~~~l~~~~~~~~~ 739 (782)
+++..+-.++.+..=+|+..+..+.+.+++.+.+.-+
T Consensus 132 ~in~~l~~l~~ia~~~d~~~~lk~~v~lw~lS~vGs~ 168 (230)
T KOG1792|consen 132 EINQALSELRDIALGRDLKDFLKVAVGLWILSYVGSL 168 (230)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHh
Confidence 4445555567777778888888888887777777533
No 324
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=30.27 E-value=2.9e+02 Score=25.52 Aligned_cols=83 Identities=13% Similarity=0.158 Sum_probs=0.0
Q ss_pred EEEEEEEEeecCCCCccCCCCCC-CcEEEEEECCEEEeecccCCCCCCeeccEEEE-----EeeCC--------CceEEE
Q 003975 368 TLELGILSAKNLMQMKSKDGKLT-DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTW-----DVYDP--------CTVITI 433 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f-----~v~~~--------~~~l~i 433 (782)
.|+++-+.|=|. .-..+ |.|..|++-|+.+||+...-..-=.++|.|.| .+.+| ...+.|
T Consensus 3 eL~i~aVTCPGv------~L~~~~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~i 76 (140)
T PF14909_consen 3 ELEIHAVTCPGV------WLCDKGDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYI 76 (140)
T ss_pred EEEEEEEecCCe------EeCCCCCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEE
Q ss_pred EEEeCCcCCCCCCCCCCCccEEEEEEcccc
Q 003975 434 GVFDNCYVNGSKDDAKDQRIGKVRIRLSTL 463 (782)
Q Consensus 434 ~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l 463 (782)
+++..... ..+.|+...=+++++
T Consensus 77 ELiQl~~~-------~g~iLA~ye~n~rDf 99 (140)
T PF14909_consen 77 ELIQLVPP-------AGEILAYYEENTRDF 99 (140)
T ss_pred EEEEEeCC-------CCcEEEEEeccccce
No 325
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=29.49 E-value=6.3 Score=44.46 Aligned_cols=73 Identities=21% Similarity=0.254 Sum_probs=49.9
Q ss_pred eeEEEEEEEEeecCCCCccCCCCCC--CcEEEEEECCEEEeecccCCCCCCeeccEEEEEeeCC--CceEEEEEEeCC
Q 003975 366 IGTLELGILSAKNLMQMKSKDGKLT--DAYCVAKYGNKWIRTRTILDTLAPRWNEQYTWDVYDP--CTVITIGVFDNC 439 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~--dpyv~v~~~~~~~rT~~~~~t~~P~wne~~~f~v~~~--~~~l~i~v~d~~ 439 (782)
.|..-++++.|.++++......++. ++++...++.+.+||....++.+|+|||. .+++.+- ...|...|.+++
T Consensus 279 ~gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~Fqsn~~l~~kiv~~~ 355 (975)
T KOG2419|consen 279 TGIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSDFQSNRYLGNKIVGYC 355 (975)
T ss_pred hhhHHHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhccccccccccc-ccccccchhhHHHhhhccccc
Confidence 4555667778887764321112233 89999999999999999999999999998 6766542 223444444443
No 326
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=29.25 E-value=1.7e+02 Score=25.88 Aligned_cols=68 Identities=25% Similarity=0.279 Sum_probs=47.4
Q ss_pred CCCCeEEEEEEeCCC---C-CCceeEEEEEEccccCCC---------CCCCCCCCCEEEEeccCCCCcccceEEEEEEEe
Q 003975 98 LQSSLLEVTVKDKDI---G-KDDFVGRVSLDLSQVPLR---------VPPDSPLAPQWYRLEDKKGDQTTKGEIMLAVWM 164 (782)
Q Consensus 98 ~~~~~L~i~V~d~d~---~-~d~~lG~~~v~l~~l~~~---------~~~~~~~~~~w~~L~~~~g~~~~~G~l~l~~~~ 164 (782)
+....|++.+++... . ...+||++.+++.+...+ ..+.+.....-|+|.+..|.. .|+|.+.+.+
T Consensus 26 l~~~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~~~--~G~I~l~iRL 103 (112)
T PF14924_consen 26 LSSFPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENGNP--VGEISLYIRL 103 (112)
T ss_pred hhCCceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCCce--eeeEEEEEEE
Confidence 346678887776543 2 677999999999987521 112233456778999987774 7999998876
Q ss_pred ccc
Q 003975 165 GTQ 167 (782)
Q Consensus 165 ~~~ 167 (782)
...
T Consensus 104 scl 106 (112)
T PF14924_consen 104 SCL 106 (112)
T ss_pred ecC
Confidence 543
No 327
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=28.84 E-value=25 Score=41.60 Aligned_cols=67 Identities=19% Similarity=0.219 Sum_probs=51.2
Q ss_pred eeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEeeeccccCCCCCccccEEEEEeccCCCCeEEEEEEeCCC
Q 003975 39 MHYLCVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGITKHLEKNQNPVWNQIFAFSKERLQSSLLEVTVKDKDI 112 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~~i~~t~nP~Wne~f~f~~~~~~~~~L~i~V~d~d~ 112 (782)
+|.+-+.+.+|..|... .+-||...+.. -+.+|.++.+|..|.||++|+..+.. .+.+++..++++.
T Consensus 758 ygflh~~vhsat~lkqs-----~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~--sqS~r~~~~ek~~ 829 (1112)
T KOG4269|consen 758 YGFLHVIVHSATGLKQS-----RNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIE--SQSSRLEKTEKST 829 (1112)
T ss_pred ccceeeeeccccccccc-----cceeeehhhhhhccccccccceeeecccCCCCChhcccchhh--ccccchhhhcccc
Confidence 56788889999888643 36688887753 36799999999999999999998865 4455666666553
No 328
>PF14851 FAM176: FAM176 family
Probab=28.81 E-value=1.2e+02 Score=28.46 Aligned_cols=13 Identities=31% Similarity=0.263 Sum_probs=7.2
Q ss_pred ccccCchhhHHHH
Q 003975 591 CTWRNPVETALLH 603 (782)
Q Consensus 591 ~~W~~p~~t~~~~ 603 (782)
+=|.+|-+.++.|
T Consensus 14 ~I~~~PE~~aLYF 26 (153)
T PF14851_consen 14 HIRDNPERFALYF 26 (153)
T ss_pred HHHhChHHHHHHH
Confidence 3467885554443
No 329
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=28.54 E-value=1.5e+02 Score=24.86 Aligned_cols=37 Identities=14% Similarity=0.320 Sum_probs=21.8
Q ss_pred HHHHhhhhhhHHHHHHHHhhHHHHHHhcccccChhhH
Q 003975 687 YERLRSVGGQLQTMVGDLASQVERAQAILCWRDLRAT 723 (782)
Q Consensus 687 ~~~~~~~~~~vq~~l~~~a~~~e~~~n~~~w~~p~~s 723 (782)
++.|.+-+..++..-..+...--+++.-.-|+.-...
T Consensus 33 L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~ 69 (89)
T PF00957_consen 33 LEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLY 69 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555666666667777788775444
No 330
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.83 E-value=1.5e+02 Score=26.22 Aligned_cols=17 Identities=12% Similarity=0.376 Sum_probs=10.3
Q ss_pred hHHHHHHHHHhhhhhhH
Q 003975 681 DTVRMRYERLRSVGGQL 697 (782)
Q Consensus 681 ~~l~~~~~~~~~~~~~v 697 (782)
+.|..|..+|+..+..+
T Consensus 39 e~L~~kV~aLKsLs~dI 55 (118)
T KOG3385|consen 39 ESLQQKVKALKSLSLDI 55 (118)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34677777776664443
No 331
>PHA01159 hypothetical protein
Probab=27.80 E-value=93 Score=27.41 Aligned_cols=78 Identities=13% Similarity=0.205 Sum_probs=48.7
Q ss_pred HHHHhhhhhhHHHHHHHHhhHHHHHHhcccccChhhHHHHHHHHHHHHHHHhhchhhhhhheeeeecccCCCCCCCCCCc
Q 003975 687 YERLRSVGGQLQTMVGDLASQVERAQAILCWRDLRATFIFLIFSFIWAVFSYVTPFEVVAVLIGLYMLRHPRFRSKMPSV 766 (782)
Q Consensus 687 ~~~~~~~~~~vq~~l~~~a~~~e~~~n~~~w~~p~~s~~~~~~l~~~~~~~~~vP~r~i~l~~g~~~~r~P~~~~~~~~~ 766 (782)
|..++.++..-|..++.+++..+-+++.|-|-.-+.-.+-+...+. .+=+.+---+.++-=.|++ +-
T Consensus 5 ~~~L~~I~~~~qt~~dFf~~~~d~i~~~fv~~~~~~i~~~l~~~I~-~i~~sY~~A~~Ll~~iG~~------------s~ 71 (114)
T PHA01159 5 YSALEFIANIGQTFLDFFDVAIDWIKNAFVYGAMWLISVWLDILIA-SIQIAYKIAQLLLEEYGVY------------TM 71 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCHH------------HH
Confidence 5667788888888888888888888888877555443322222222 2222223344444445665 66
Q ss_pred hhhhhccCCCC
Q 003975 767 PVNFFKSFPSK 777 (782)
Q Consensus 767 ~~~~~~r~ps~ 777 (782)
+.+.+++|||.
T Consensus 72 i~s~fnaLPse 82 (114)
T PHA01159 72 VESRFNALPSD 82 (114)
T ss_pred HHHHHHhCCHH
Confidence 77888888875
No 332
>PF08653 DASH_Dam1: DASH complex subunit Dam1; InterPro: IPR013962 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=27.39 E-value=2.5e+02 Score=21.70 Aligned_cols=49 Identities=14% Similarity=0.255 Sum_probs=34.4
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhhHHHHHHhcccccChhhHHHHHHHHHHHH
Q 003975 683 VRMRYERLRSVGGQLQTMVGDLASQVERAQAILCWRDLRATFIFLIFSFIWA 734 (782)
Q Consensus 683 l~~~~~~~~~~~~~vq~~l~~~a~~~e~~~n~~~w~~p~~s~~~~~~l~~~~ 734 (782)
+..++..|-+.+..++..+.++..+.|.+.+ +...++|++.-+.+-..|
T Consensus 3 l~~~f~eL~D~~~~L~~n~~~L~~ihesL~~---FNESFasfLYGl~mna~c 51 (58)
T PF08653_consen 3 LEPQFAELSDSMETLDKNMEQLNQIHESLSD---FNESFASFLYGLNMNAWC 51 (58)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4456666777777788888888888888777 566777766555544444
No 333
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=26.76 E-value=28 Score=41.29 Aligned_cols=90 Identities=23% Similarity=0.328 Sum_probs=60.9
Q ss_pred ceeEEEEEEEEeecCCCCccCCCCCCCcEEEEEE---C--CEEEeecccCCCCCCeeccEEEEEeeCCCceEEEEEEeCC
Q 003975 365 SIGTLELGILSAKNLMQMKSKDGKLTDAYCVAKY---G--NKWIRTRTILDTLAPRWNEQYTWDVYDPCTVITIGVFDNC 439 (782)
Q Consensus 365 ~~g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~---~--~~~~rT~~~~~t~~P~wne~~~f~v~~~~~~l~i~v~d~~ 439 (782)
..|.+.+.+++|.+|... ..-||...+ | ....+|+++.+|..|.||+.++.++-.. +...|..++++
T Consensus 757 ~ygflh~~vhsat~lkqs-------~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~s-qS~r~~~~ek~ 828 (1112)
T KOG4269|consen 757 LYGFLHVIVHSATGLKQS-------RNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIES-QSSRLEKTEKS 828 (1112)
T ss_pred cccceeeeeccccccccc-------cceeeehhhhhhccccccccceeeecccCCCCChhcccchhhc-cccchhhhccc
Confidence 368999999999998742 267888765 2 3578999999999999999999887643 45556666655
Q ss_pred cCCC----CCCCCCCCccEEEEEEccc
Q 003975 440 YVNG----SKDDAKDQRIGKVRIRLST 462 (782)
Q Consensus 440 ~~~~----~~~~~~d~~lG~~~i~l~~ 462 (782)
.-.+ ......+...|+.++.+.-
T Consensus 829 ~~~~k~~~~~~~~~~~~~~~~~~~l~~ 855 (1112)
T KOG4269|consen 829 TPVEKLIDSHSQNSQNEEKRSRMKLDP 855 (1112)
T ss_pred chHHHhhhccchhhcccccccccccCc
Confidence 3110 0001355566666655544
No 334
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.15 E-value=1.7e+02 Score=26.05 Aligned_cols=32 Identities=16% Similarity=0.369 Sum_probs=19.2
Q ss_pred hhhHHHHHHHHhhHHHHHHhcccccChhhHHH
Q 003975 694 GGQLQTMVGDLASQVERAQAILCWRDLRATFI 725 (782)
Q Consensus 694 ~~~vq~~l~~~a~~~e~~~n~~~w~~p~~s~~ 725 (782)
+..+|..-..+-..--+++--+.|.+-+...+
T Consensus 66 ad~L~~~as~F~~~A~klkrk~wWkn~Km~~i 97 (116)
T KOG0860|consen 66 ADQLQAGASQFEKTAVKLKRKMWWKNCKMRII 97 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455554555555556677788988765543
No 335
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=24.49 E-value=54 Score=38.12 Aligned_cols=61 Identities=16% Similarity=0.275 Sum_probs=41.1
Q ss_pred HHHHHHHHhhHHHHHHhcccccChhhHHHHHHHHHHHH---HHHhhchhhhhhheeeeecccCC
Q 003975 697 LQTMVGDLASQVERAQAILCWRDLRATFIFLIFSFIWA---VFSYVTPFEVVAVLIGLYMLRHP 757 (782)
Q Consensus 697 vq~~l~~~a~~~e~~~n~~~w~~p~~s~~~~~~l~~~~---~~~~~vP~r~i~l~~g~~~~r~P 757 (782)
.+.+|-=+..++..++.+..|.+|..|..|+++.+.+. -+-|++|.-.++++.+....||-
T Consensus 492 ~kELL~Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~~ 555 (683)
T PF04842_consen 492 MKELLFPLIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRYQ 555 (683)
T ss_pred HHhccccHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555666777888999999999999976655544332 23577787666666555555553
No 336
>PHA02844 putative transmembrane protein; Provisional
Probab=24.15 E-value=1.7e+02 Score=23.64 Aligned_cols=17 Identities=12% Similarity=0.239 Sum_probs=11.4
Q ss_pred HHHhhHHHHHHhccccc
Q 003975 702 GDLASQVERAQAILCWR 718 (782)
Q Consensus 702 ~~~a~~~e~~~n~~~w~ 718 (782)
+|+.+++|-++.+++=.
T Consensus 18 dDFnnFI~vVksVLtd~ 34 (75)
T PHA02844 18 EDFNNFIDVVKSVLSDD 34 (75)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 56667777777777543
No 337
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=23.18 E-value=5.6e+02 Score=23.08 Aligned_cols=89 Identities=12% Similarity=0.103 Sum_probs=53.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEe-eeccccCCCCCccccEEEEEec--cCCCCeEEEEEEeCCC--CCC
Q 003975 41 YLCVNVVKARNLPVMDVSGSLDPYVEVKLGNYKG-ITKHLEKNQNPVWNQIFAFSKE--RLQSSLLEVTVKDKDI--GKD 115 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~-kT~~i~~t~nP~Wne~f~f~~~--~~~~~~L~i~V~d~d~--~~d 115 (782)
.|.++=+.-...|.-+..+.+.||++|.-++... .|........-.=...+.+.+. -.-..-+.|++|+... ..+
T Consensus 5 ~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~~~ 84 (134)
T PF10409_consen 5 PLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYEDPKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSMSK 84 (134)
T ss_dssp EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCCCCCEEETTCEEEEEEEEEEEESEEEEEEEECETTECCC
T ss_pred eEEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEeccceeccccccceeEEEEeCCCCeEeCCEEEEEEeCCCccccc
Confidence 4555555567777766678899999999988654 3333322211111122233322 1114568899999874 377
Q ss_pred ceeEEEEEEccccC
Q 003975 116 DFVGRVSLDLSQVP 129 (782)
Q Consensus 116 ~~lG~~~v~l~~l~ 129 (782)
+.+.++.+...=+.
T Consensus 85 ~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 85 EKMFRFWFNTGFIE 98 (134)
T ss_dssp EEEEEEEEEGGGSB
T ss_pred CeEEEEEEeeeeee
Confidence 88888888777665
No 338
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=23.16 E-value=5.6e+02 Score=23.07 Aligned_cols=88 Identities=10% Similarity=0.046 Sum_probs=52.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEe-eeecccCCCCCCcc-cceeEEEec--CCCCCeEEEEEEEccC-CCC
Q 003975 204 LRVFVFEAQDLVPSDKGRAPDACVRIQLGNQLR-VTRPSHVRSVNPVW-NEEHMFVAS--EPFEDLIIVTVEDRIR-PGK 278 (782)
Q Consensus 204 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~-~T~~~~~~t~nP~w-ne~f~f~v~--~~~~~~l~i~V~d~~~-~~~ 278 (782)
|.++=+.-.+.|.-+..+.+.||++|+-+++.. .+..... ..... ...+.+.+. -+-..-+.|.+|+... ...
T Consensus 6 l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~~ 83 (134)
T PF10409_consen 6 LFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYE--DPKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSMS 83 (134)
T ss_dssp EEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCC--CCCEEETTCEEEEEEEEEEEESEEEEEEEECETTECC
T ss_pred EEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEecccee--ccccccceeEEEEeCCCCeEeCCEEEEEEeCCCcccc
Confidence 444445556777666667799999999988766 3333221 11111 122333322 2224578899998763 456
Q ss_pred CceeEEEEEeCCCcc
Q 003975 279 DEILGRELIPVRNVP 293 (782)
Q Consensus 279 d~~iG~~~i~l~~l~ 293 (782)
++.+.++.+...-+.
T Consensus 84 ~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 84 KEKMFRFWFNTGFIE 98 (134)
T ss_dssp CEEEEEEEEEGGGSB
T ss_pred cCeEEEEEEeeeeee
Confidence 777888888876665
No 339
>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.96 E-value=4.2e+02 Score=25.87 Aligned_cols=74 Identities=24% Similarity=0.315 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhhccCCCCChHHHHHhhccCCCceeehhh-chhhHHHHHHHHHHHHHHhhccccccCchhhHHHHHHH
Q 003975 528 RLRHQAMQIVAAGLGRAEPPLRREVMEYMLDVDYHMWSLRK-CKANFQRIVELLSAICRWFNDICTWRNPVETALLHVLF 606 (782)
Q Consensus 528 ~~r~~~~~~~~~~~~~~~p~~~~~~~~~~ld~~~~~~s~~~-~~~n~~rl~~~~~~~~~~~~~~~~W~~p~~t~~~~~~~ 606 (782)
..-.++.+.+...+...-| .+|.+ |...||... +..-..|++..++- .+.-...+.+.+++
T Consensus 21 ~~~~~~~~~~~~~lst~Rp--W~ef~------d~~~fs~P~s~s~a~sRi~~Nl~y----------F~~NY~~iv~~~~~ 82 (187)
T KOG3142|consen 21 SISSRAKQTIQSGLSTRRP--WSEFF------DRSAFSRPRSLSDATSRIKRNLSY----------FRVNYVIIVAILLF 82 (187)
T ss_pred hHHHHHHHHHHHHHhccCC--HHHHH------cccccCCCccHHHHHHHHHHHHHH----------HHHhHHHHHHHHHH
Confidence 3344444555555544433 55554 445555433 33444455444441 11111233444555
Q ss_pred HHHHHccchhHHH
Q 003975 607 LTLVFYPELILPT 619 (782)
Q Consensus 607 ~~~~~~~~l~~p~ 619 (782)
..++|+|-.++.+
T Consensus 83 ~sLi~~P~~Livl 95 (187)
T KOG3142|consen 83 LSLITHPLSLIVL 95 (187)
T ss_pred HHHHHhHHHHHHH
Confidence 5567887654433
No 340
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=22.64 E-value=1.4e+02 Score=35.69 Aligned_cols=67 Identities=16% Similarity=0.208 Sum_probs=45.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC----Ce----EeeeccccCCCCCccccEEEEEec--c-CCCCeEEEEEEe
Q 003975 41 YLCVNVVKARNLPVMDVSGSLDPYVEVKLG----NY----KGITKHLEKNQNPVWNQIFAFSKE--R-LQSSLLEVTVKD 109 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~----~~----~~kT~~i~~t~nP~Wne~f~f~~~--~-~~~~~L~i~V~d 109 (782)
.++|+++++.++... ..-|-+|.|..| ++ ...|+-+..+.+|.||+...|+++ + +....|.|.||.
T Consensus 344 ~frI~l~~is~~n~~---~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~ 420 (1076)
T KOG0904|consen 344 PFRIKLVGISKVNLP---ETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYA 420 (1076)
T ss_pred ceEEEEeeccccCCC---cccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeeeE
Confidence 578888888765432 344667777664 33 245666666889999999999875 3 335667777765
Q ss_pred C
Q 003975 110 K 110 (782)
Q Consensus 110 ~ 110 (782)
-
T Consensus 421 v 421 (1076)
T KOG0904|consen 421 V 421 (1076)
T ss_pred e
Confidence 3
Done!