BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003976
(782 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 461 bits (1186), Expect = e-130, Method: Compositional matrix adjust.
Identities = 267/770 (34%), Positives = 421/770 (54%), Gaps = 55/770 (7%)
Query: 36 SFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDS---LGHLSSHPH---- 88
S L++F A +D + M +G+L A IHG LP+ ++FG M DS +G++S +
Sbjct: 34 SVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSE 93
Query: 89 --------RLTSRISEHXXXXXXXXXXXXXSAWIGVAFWMQTGERQTARLRLKYLQSVLK 140
+L ++ + A+I V+FW RQ ++R K+ +++
Sbjct: 94 ADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMN 153
Query: 141 KDMSFFDT-EARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLT 199
+++ +FD + + N ++ D + + IGDK G + ++ FF GF +GFT W+LT
Sbjct: 154 QEIGWFDVHDVGELNT--RLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLT 211
Query: 200 LLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIE 259
L+ LA+ P++ ++ G + +S+ ++K AY +AG VAEE+++ +R V AF G+ K +E
Sbjct: 212 LVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELE 271
Query: 260 SYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTI 319
Y+++L+EA + G K + I +G + L++ ++AL WY LV + + G+ T
Sbjct: 272 RYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVF 331
Query: 320 INVIFSGFALGQXXXXXXXXXXXXXXXXXXXXXXXXX------SHSSERPGDDGITLPKL 373
+V+ F++GQ S S +P + +
Sbjct: 332 FSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDN-------I 384
Query: 374 AGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS 432
G +EF + F+YPSR + + + LN V +G+T A VG SG GKST + ++QRLY+P
Sbjct: 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLD 444
Query: 433 GKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAAN 492
G + +DG D++++ +++LRE +G+VSQEP LFAT+IA NI G+ED +MD + +A K AN
Sbjct: 445 GMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEAN 504
Query: 493 AHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELI 552
A+ F+ LP + T VGE G QLSGGQKQRIAIARA++RNPKILLLDEATSALD ESE +
Sbjct: 505 AYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAV 564
Query: 553 VQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNL 612
VQ AL+K RTTIV+AHRLSTVR+ D I G +VE G H +L+ + G Y LV
Sbjct: 565 VQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMT 624
Query: 613 Q--------------SSEHLSNPXXXXXXXXXXXXXFRDFPSSRRYDVEFESSKRRELQS 658
Q S + + N R S R + + R+L +
Sbjct: 625 QTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRR----STRKSICGPHDQDRKLST 680
Query: 659 SD--QSFAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYS--P 714
+ P S W +LKLN+ EWPY V+G AI+ G P F++ + ++ F + P
Sbjct: 681 KEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGP 740
Query: 715 HDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMF 764
++Q ++ + +L+F+ L +++ + LQ + + GE LT R+R +F
Sbjct: 741 PETQ-RQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVF 789
Score = 336 bits (862), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 190/502 (37%), Positives = 281/502 (55%), Gaps = 13/502 (2%)
Query: 121 QTGERQTARLRLKYLQSVLKKDMSFFDTEARDSN-IIFHISSDAILVQDAIGDKTGHALR 179
+ GE T RLR +S+L++D+S+FD + + +++DA V+ A G + +
Sbjct: 775 KAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQ 834
Query: 180 YLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAE 239
++ G + WQLTLL LA+VP+IA+AG +S + K + +GK+A
Sbjct: 835 NIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIAT 894
Query: 240 EIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLW 299
E I R V + E K Y+ SL+ + K GI T +++ ++A
Sbjct: 895 EAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFR 954
Query: 300 YAGILVRHGDTNGGKAFTTIINVIFSGFALGQXXX----XXXXXXXXXXXXXXXXXXXXX 355
+ LV ++F A+GQ
Sbjct: 955 FGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEI 1014
Query: 356 XSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVGPSG 414
S+S++ G+ L G ++FS V F YP+RP + V + L+ V G+T A VG SG
Sbjct: 1015 DSYSTQ-----GLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSG 1069
Query: 415 SGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILL 474
GKST++ +++R Y+P +G + LDG ++K L ++WLR Q+G+VSQEP LF SIA NI
Sbjct: 1070 CGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAY 1129
Query: 475 GKED--ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 532
G S + ++ AAK AN H F++ LPD Y T+VG+ GTQLSGGQKQRIAIARA++R
Sbjct: 1130 GDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQ 1189
Query: 533 PKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVE 592
P ILLLDEATSALD ESE +VQ AL+K RT IV+AHRLST+++ D I+V++NG+V E
Sbjct: 1190 PHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKE 1249
Query: 593 SGTHVDLISKGGEYAALVNLQS 614
GTH L+++ G Y ++V++Q+
Sbjct: 1250 HGTHQQLLAQKGIYFSMVSVQA 1271
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 461 bits (1186), Expect = e-130, Method: Compositional matrix adjust.
Identities = 267/770 (34%), Positives = 421/770 (54%), Gaps = 55/770 (7%)
Query: 36 SFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDS---LGHLSSHPH---- 88
S L++F A +D + M +G+L A IHG LP+ ++FG M DS +G++S +
Sbjct: 34 SVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSE 93
Query: 89 --------RLTSRISEHXXXXXXXXXXXXXSAWIGVAFWMQTGERQTARLRLKYLQSVLK 140
+L ++ + A+I V+FW RQ ++R K+ +++
Sbjct: 94 ADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMN 153
Query: 141 KDMSFFDT-EARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLT 199
+++ +FD + + N ++ D + + IGDK G + ++ FF GF +GFT W+LT
Sbjct: 154 QEIGWFDVHDVGELNT--RLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLT 211
Query: 200 LLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIE 259
L+ LA+ P++ ++ G + +S+ ++K AY +AG VAEE+++ +R V AF G+ K +E
Sbjct: 212 LVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELE 271
Query: 260 SYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKAFTTI 319
Y+++L+EA + G K + I +G + L++ ++AL WY LV + + G+ T
Sbjct: 272 RYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVF 331
Query: 320 INVIFSGFALGQXXXXXXXXXXXXXXXXXXXXXXXXX------SHSSERPGDDGITLPKL 373
+V+ F++GQ S S +P + +
Sbjct: 332 FSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDN-------I 384
Query: 374 AGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS 432
G +EF + F+YPSR + + + LN V +G+T A VG SG GKST + ++QRLY+P
Sbjct: 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLD 444
Query: 433 GKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAAN 492
G + +DG D++++ +++LRE +G+VSQEP LFAT+IA NI G+ED +MD + +A K AN
Sbjct: 445 GMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEAN 504
Query: 493 AHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELI 552
A+ F+ LP + T VGE G QLSGGQKQRIAIARA++RNPKILLLDEATSALD ESE +
Sbjct: 505 AYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAV 564
Query: 553 VQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNL 612
VQ AL+K RTTIV+AHRLSTVR+ D I G +VE G H +L+ + G Y LV
Sbjct: 565 VQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMT 624
Query: 613 Q--------------SSEHLSNPXXXXXXXXXXXXXFRDFPSSRRYDVEFESSKRRELQS 658
Q S + + N R S R + + R+L +
Sbjct: 625 QTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRR----STRKSICGPHDQDRKLST 680
Query: 659 SD--QSFAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAFYS--P 714
+ P S W +LKLN+ EWPY V+G AI+ G P F++ + ++ F + P
Sbjct: 681 KEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGP 740
Query: 715 HDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMF 764
++Q ++ + +L+F+ L +++ + LQ + + GE LT R+R +F
Sbjct: 741 PETQ-RQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVF 789
Score = 337 bits (864), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 190/502 (37%), Positives = 281/502 (55%), Gaps = 13/502 (2%)
Query: 121 QTGERQTARLRLKYLQSVLKKDMSFFDTEARDSN-IIFHISSDAILVQDAIGDKTGHALR 179
+ GE T RLR +S+L++D+S+FD + + +++DA V+ A G + +
Sbjct: 775 KAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQ 834
Query: 180 YLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAE 239
++ G + WQLTLL LA+VP+IA+AG +S + K + +GK+A
Sbjct: 835 NIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIAT 894
Query: 240 EIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLW 299
E I R V + E K Y+ SL+ + K GI T +++ ++A
Sbjct: 895 EAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAACFR 954
Query: 300 YAGILVRHGDTNGGKAFTTIINVIFSGFALGQXXX----XXXXXXXXXXXXXXXXXXXXX 355
+ LV ++F A+GQ
Sbjct: 955 FGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEI 1014
Query: 356 XSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVGPSG 414
S+S++ G+ L G ++FS V F YP+RP + V + L+ V G+T A VG SG
Sbjct: 1015 DSYSTQ-----GLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSG 1069
Query: 415 SGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILL 474
GKST++ +++R Y+P +G + LDG ++K L ++WLR Q+G+VSQEP LF SIA NI
Sbjct: 1070 CGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAY 1129
Query: 475 GKED--ASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRN 532
G S + ++ AAK AN H F++ LPD Y T+VG+ GTQLSGGQKQRIAIARA++R
Sbjct: 1130 GDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQ 1189
Query: 533 PKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVE 592
P ILLLDEATSALD ESE +VQ AL+K RT IV+AHRLST+++ D I+V++NG+V E
Sbjct: 1190 PHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKE 1249
Query: 593 SGTHVDLISKGGEYAALVNLQS 614
GTH L+++ G Y ++V++Q+
Sbjct: 1250 HGTHQQLLAQKGIYFSMVSVQA 1271
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 394 bits (1013), Expect = e-110, Method: Compositional matrix adjust.
Identities = 240/602 (39%), Positives = 341/602 (56%), Gaps = 31/602 (5%)
Query: 36 SFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRM----------IDSLGH--L 83
S L+ ++ +L+F+G+L A I GA LP+ IL G++ I++ G L
Sbjct: 61 SIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFL 120
Query: 84 SSHPHRLTSRISEHXXXXXXXXXXXXXSAW----IGVAFWMQTGERQTARLRLKYLQSVL 139
+ + + W I V ++ E+ RLR ++++S+L
Sbjct: 121 PTGQNYTKTDFEHDVMNVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSIL 180
Query: 140 KKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLT 199
++++S+FDT + + + V++ GDK G A +YLSQF GF V FT WQLT
Sbjct: 181 RQEISWFDTN-HSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSWQLT 239
Query: 200 LLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIE 259
L+ LAV P+ A+ G A +MST + + Y +AGKV EE IS +R V + G +E
Sbjct: 240 LVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELE 299
Query: 260 SYSHSLKEALKQGKKSGVAKGIGVGLTYGLL----FCAWALLLWYAGILVRHGDTNGGKA 315
YS +++EA KK+GV KG+ +G+++G + F ++AL + V G N G
Sbjct: 300 RYSTAVEEA----KKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDM 355
Query: 316 FTTIINVIFSGFALGQXXXXXXXXXXXXXXXXXXXXXXXXXS--HSSERPGDDGITLPKL 373
TT +V+ ALG SS + G + K+
Sbjct: 356 LTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDM---KI 412
Query: 374 AGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTS 432
G I V F YPSRP + + +N V+AG+T A VG SG GKSTIIS++ R Y+
Sbjct: 413 KGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLK 472
Query: 433 GKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAAN 492
GKI +DG D++ + L++LR+ + +VSQEPALF +I NI LGKE + + ++ A K AN
Sbjct: 473 GKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMAN 532
Query: 493 AHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELI 552
A F++ LP+GY T VG+ GTQLSGGQKQRIAIARA++RNPKILLLDEATSALDAESE I
Sbjct: 533 AEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGI 592
Query: 553 VQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNL 612
VQ+AL+K RTTI++AHRLST+R+ D I+ KNGQVVE G H L+++ G Y LV
Sbjct: 593 VQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTA 652
Query: 613 QS 614
Q+
Sbjct: 653 QT 654
Score = 309 bits (792), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 203/609 (33%), Positives = 314/609 (51%), Gaps = 24/609 (3%)
Query: 20 IPKMKQQTNPSKKQSGSFLSLFAAADKIDCVLMFLGSLGAFIHGATLPVFFILFGRMIDS 79
+ ++KQ+ + Q + + A + + +F+G A I G P + + F ++
Sbjct: 723 LSRLKQELEENNAQKTNLFEILYHA-RPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNV 781
Query: 80 LGHLSSHPHRLTSRISEHXXXXXXXXXXXXXSAWIGVAFWMQTGERQTARLRLKYLQSVL 139
+ +P S+ +++ F E T LR K ++VL
Sbjct: 782 F---AGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVL 838
Query: 140 KKDMSFFDTEARDS-NIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQL 198
+ + FFD+ S I +++D ++ AI + + L G + F WQ+
Sbjct: 839 SQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQM 898
Query: 199 TLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAI 258
LL +A++P++A + + K + + ++GK+A E I VR V A E
Sbjct: 899 ALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFY 958
Query: 259 ESYSHSL----KEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGK 314
E++ L KEA+K+ G++ G + Y L CA+ + L A I+ +
Sbjct: 959 ENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGL--ALIITDPPTMQPMR 1016
Query: 315 AFTTIINVIFSGFALGQXXXXXXXXXXXXXXXXXXXXXXXXXSHSSERPGDDGITL---- 370
+ + S LG S D ++L
Sbjct: 1017 VLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKI------DSLSLAGEK 1070
Query: 371 PKLAGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYE 429
KL G++ F V FAYP RP + + + L+FSV+ G+T A VGPSG GKST++++++R Y+
Sbjct: 1071 KKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD 1130
Query: 430 PTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDAS--MDRVIEA 487
G+I +DG ++K+L + R Q+ +VSQEP LF SIA NI+ G + +S M +V EA
Sbjct: 1131 TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEA 1190
Query: 488 AKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 547
A+ AN H+F+ LP+G++T+VG+ GTQLSGGQKQRIAIARA++RNPKILLLDEATSALD
Sbjct: 1191 ARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDT 1250
Query: 548 ESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYA 607
ESE +VQ AL++ RT IV+AHRL+TV + D I V+ NG ++E GTH L+S+ G Y
Sbjct: 1251 ESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYY 1310
Query: 608 ALVNLQSSE 616
L Q +E
Sbjct: 1311 KLTQKQMTE 1319
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 323 bits (828), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 191/508 (37%), Positives = 291/508 (57%), Gaps = 18/508 (3%)
Query: 118 FWMQT-GERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGH 176
+ MQT G+R RLR S+L+++++FFD + R +I +SSD L+ ++ +
Sbjct: 84 YLMQTSGQRIVNRLRTSLFSSILRQEVAFFD-KTRTGELINRLSSDTALLGRSVTENLSD 142
Query: 177 ALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGK 236
LR +Q VG ++ F L L+VVP +++ Y + L++ + + +A +
Sbjct: 143 GLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQ 202
Query: 237 VAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGI---GVGLTYGLLFCA 293
+AEE I VR V AF E IE Y+ + ++ +K A+ GL+ L+ +
Sbjct: 203 LAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLS 262
Query: 294 WALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQXXXXXXXXXXXXXXXXXXXXXX 353
+L+ G+L+ G+ + ++ + G ++G
Sbjct: 263 ---VLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIG---GLSSFYSELMKGLGAGGRLW 316
Query: 354 XXXSHSSERPGDDGITLPK--LAGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFV 410
+ P ++G+ L + G +EF V FAYP+RP + +F++ + S+ +G A V
Sbjct: 317 ELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALV 376
Query: 411 GPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIAN 470
GPSGSGKST++S++ RLY+P SG I LDGHD++ L WLR ++G VSQEP LF+ SIA
Sbjct: 377 GPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAE 436
Query: 471 NILLGKEDAS---MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 527
NI G +D S + + A+ ANA +F+ P G+ T VGE G LSGGQKQRIAIAR
Sbjct: 437 NIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIAR 496
Query: 528 AVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKN 587
A+L+NPKILLLDEATSALDAE+E +VQ AL+++M RT +V+AHRLST+++ + + VL
Sbjct: 497 ALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQ 556
Query: 588 GQVVESGTHVDLISK-GGEYAALVNLQS 614
G++ E G H +L+SK G Y L+N QS
Sbjct: 557 GKITEYGKHEELLSKPNGIYRKLMNKQS 584
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 320 bits (819), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 190/508 (37%), Positives = 290/508 (57%), Gaps = 18/508 (3%)
Query: 118 FWMQT-GERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGH 176
+ MQT G+R RLR S+L+++++FFD + R +I +SSD L+ ++ +
Sbjct: 115 YLMQTSGQRIVNRLRTSLFSSILRQEVAFFD-KTRTGELINRLSSDTALLGRSVTENLSD 173
Query: 177 ALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGK 236
LR +Q VG ++ F L L+VVP +++ Y + L++ + + +A +
Sbjct: 174 GLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQ 233
Query: 237 VAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGI---GVGLTYGLLFCA 293
+AEE I VR V AF E IE Y+ + ++ +K A+ GL+ L+ +
Sbjct: 234 LAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLS 293
Query: 294 WALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQXXXXXXXXXXXXXXXXXXXXXX 353
+L+ G+L+ G+ + ++ + G ++G
Sbjct: 294 ---VLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIG---GLSSFYSELMKGLGAGGRLW 347
Query: 354 XXXSHSSERPGDDGITLPK--LAGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFV 410
+ P ++G+ L + G +EF V FAYP+RP + +F++ + S+ +G A V
Sbjct: 348 ELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALV 407
Query: 411 GPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIAN 470
GPSGSGKST++S++ RLY+P SG I LDGHD++ L WLR ++G VSQEP LF+ SIA
Sbjct: 408 GPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAE 467
Query: 471 NILLGKEDAS---MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIAR 527
NI G +D S + + A+ ANA +F+ P G+ T VGE G LSGGQKQRIAIAR
Sbjct: 468 NIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIAR 527
Query: 528 AVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKN 587
A+L+NPKILLLDEATSALDAE+E +VQ AL+++M RT +V+AH LST+++ + + VL
Sbjct: 528 ALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLSTIKNANMVAVLDQ 587
Query: 588 GQVVESGTHVDLISK-GGEYAALVNLQS 614
G++ E G H +L+SK G Y L+N QS
Sbjct: 588 GKITEYGKHEELLSKPNGIYRKLMNKQS 615
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 260 bits (665), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 124/240 (51%), Positives = 174/240 (72%)
Query: 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 434
G+I+ V F Y + +++N S++ G+T AFVG SG GKST+I+++ R Y+ TSG+
Sbjct: 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ 397
Query: 435 ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAH 494
IL+DGH++K LR Q+GLV Q+ LF+ ++ NILLG+ A+ + V+EAAK ANAH
Sbjct: 398 ILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAH 457
Query: 495 SFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQ 554
F+ LP GY T+VGE G +LSGGQKQR++IAR L NP IL+LDEATSALD ESE I+Q
Sbjct: 458 DFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQ 517
Query: 555 RALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQS 614
AL+ + +RTT++VAHRLST+ D I+V++NG +VE+GTH +LI+K G Y L ++Q+
Sbjct: 518 EALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSIQN 577
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 254 bits (650), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 162/486 (33%), Positives = 248/486 (51%), Gaps = 8/486 (1%)
Query: 130 LRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFA 189
+R + ++ +SFFD ++ + ++ I+ D+ V + +R + F
Sbjct: 100 MRRRLFGHMMGMPVSFFDKQSTGT-LLSRITYDSEQVASSSSGALITVVREGASIIGLFI 158
Query: 190 VGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVY 249
+ F WQL+++ + + P++++A + +S+ + G+ AE+++ + V
Sbjct: 159 MMFYYSWQLSIILIVLAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVL 218
Query: 250 AFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGD 309
F G+ + + QG K A I + + A A +L+ A
Sbjct: 219 IFGGQEVETKRFDKVSNRMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDS 278
Query: 310 TNGGKAFTTIINVIFSGFALGQXXXXXXXXXXXXXXXXXXXXXXXXXSHSSERPGDDGI- 368
G I V+FS SE+ D+G
Sbjct: 279 LTAGT-----ITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFTILDSEQEKDEGKR 333
Query: 369 TLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLY 428
+ + G +EF V F YP R N+N + AGKT A VG SGSGKSTI S++ R Y
Sbjct: 334 VIERATGDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY 393
Query: 429 EPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGK-EDASMDRVIEA 487
+ G+IL+DGHDL+ L LR Q+ LVSQ LF ++ANNI + E S +++ EA
Sbjct: 394 DIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEA 453
Query: 488 AKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA 547
A+ A A F+ + +G T +GE G LSGGQ+QRIAIARA+LR+ IL+LDEATSALD
Sbjct: 454 ARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDT 513
Query: 548 ESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYA 607
ESE +Q AL+++ NRT++V+AHRLST+ D I+V+++G +VE GTH DL+ G YA
Sbjct: 514 ESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYA 573
Query: 608 ALVNLQ 613
L +Q
Sbjct: 574 QLHKMQ 579
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 253 bits (647), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 152/428 (35%), Positives = 228/428 (53%), Gaps = 7/428 (1%)
Query: 188 FAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRA 247
F + F WQL+++ + + P++++A + ++S+ + G+ AE+++ +
Sbjct: 157 FIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKE 216
Query: 248 VYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRH 307
V F G+ + + + QG K A I + + A A +L+ A
Sbjct: 217 VLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVM 276
Query: 308 GDTNGGKAFTTIINVIFSGFALGQXXXXXXXXXXXXXXXXXXXXXXXXXSHSSERPGDDG 367
G I V+FS SE+ D+G
Sbjct: 277 DSLTAGT-----ITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEG 331
Query: 368 I-TLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQR 426
+ + G +EF V F YP R N+N + AGKT A VG SGSGKSTI S++ R
Sbjct: 332 KRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITR 391
Query: 427 LYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGK-EDASMDRVI 485
Y+ G IL+DGHDL+ L LR Q+ LVSQ LF ++ANNI + E+ S +++
Sbjct: 392 FYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIE 451
Query: 486 EAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL 545
EAA+ A A F+ + +G T +GE G LSGGQ+QRIAIARA+LR+ IL+LDEATSAL
Sbjct: 452 EAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSAL 511
Query: 546 DAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGE 605
D ESE +Q AL+++ NRT++V+AHRLST+ D I+V+++G +VE GTH +L+++ G
Sbjct: 512 DTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGV 571
Query: 606 YAALVNLQ 613
YA L +Q
Sbjct: 572 YAQLHKMQ 579
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 241 bits (615), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 157/493 (31%), Positives = 255/493 (51%), Gaps = 14/493 (2%)
Query: 129 RLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGF 188
++R + + + FFD E+ ++ I+ D+ V A +R +
Sbjct: 99 QMRRRLFNHFMHMPVRFFDQES-TGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLL 157
Query: 189 AVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAV 248
+ F + WQL+L+ + V P++A A + +S + A G AE+++ + V
Sbjct: 158 TLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVV 217
Query: 249 YAFVG---EAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILV 305
++ G E K + S+S+++ Q K A+ I + + A +L+ A +
Sbjct: 218 LSYGGQEVERKRFDKVSNSMRQ---QTMKLVSAQSIADPVIQMIASLALFAVLFLASVDS 274
Query: 306 RHGDTNGGKAFTTIINVIFSGFALGQXXXXXXXXXXXXXXXXXXXXXXXXXSHSSERPGD 365
+ G FT + + +F + +ER D
Sbjct: 275 IRAELTPG-TFTVVFSAMFG--LMRPLKALTSVTSEFQRGMAACQTLFGLMDLETER--D 329
Query: 366 DG-ITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMV 424
+G ++ G+++ +V F Y + +++FS+ GKT A VG SGSGKSTI ++
Sbjct: 330 NGKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLF 389
Query: 425 QRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKE-DASMDR 483
R Y+ SG I LDGHD++ +L LR LVSQ LF +IANNI E + + ++
Sbjct: 390 TRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQ 449
Query: 484 VIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATS 543
+ +AA+ A+A F+E +P G T +GE GT LSGGQ+QR+AIARA+LR+ +L+LDEATS
Sbjct: 450 IEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATS 509
Query: 544 ALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKG 603
ALD ESE +Q AL+++ N+T +V+AHRLST+ D I+V+ G+++E G H DL+++
Sbjct: 510 ALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQD 569
Query: 604 GEYAALVNLQSSE 616
G YA L +Q E
Sbjct: 570 GAYAQLHRIQFGE 582
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 234 bits (597), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 153/524 (29%), Positives = 263/524 (50%), Gaps = 43/524 (8%)
Query: 112 AWIGVAFWMQ------TGERQTARLRLKYLQSVLKKDMSFFDTEARDSNIIFHISSDAIL 165
A + FW+Q + RLR + + + + + FFD +II + +D
Sbjct: 88 ALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPH-GDIISRVINDVDN 146
Query: 166 VQDAIGDKTGHALRYLSQFFVGFA-------VGFTSVWQLTLLTLAVVPLIAVAGGAYTI 218
+ + +G+ + QFF G + F L+L+TL++VPL + +
Sbjct: 147 INNVLGNS-------IIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSS 199
Query: 219 TMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVA 278
+ + G+ + EE IS + + F E K +E + + K G K+ +
Sbjct: 200 QTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIF 259
Query: 279 KGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGG---------KAFTTIINVIFSGFAL 329
G+ L + +AL+ + G L G + FT +N + + F +
Sbjct: 260 SGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNM 319
Query: 330 GQXXXXXXXXXXXXXXXXXXXXXXXXXSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSR 389
Q E+ D + L ++ G+IEF V F+Y +
Sbjct: 320 IQMALASAERIFEIL------------DLEEEKDDPDAVELREVRGEIEFKNVWFSY-DK 366
Query: 390 PHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKW 449
V +++ F + G+ A VGP+GSGK+TI++++ R Y+ G+IL+DG D++ ++
Sbjct: 367 KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSS 426
Query: 450 LREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVG 509
LR +G+V Q+ LF+T++ N+ G A+ + + EAAK ++ F++ LP+GY+T +
Sbjct: 427 LRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLT 486
Query: 510 EGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVV 569
+ G LS GQ+Q +AI RA L NPKIL+LDEATS +D ++E +Q A+ K+M +T+I++
Sbjct: 487 DNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIII 546
Query: 570 AHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQ 613
AHRL+T+++ D I+VL++G++VE G H +LI K G Y L Q
Sbjct: 547 AHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQ 590
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 232 bits (591), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 116/240 (48%), Positives = 159/240 (66%), Gaps = 1/240 (0%)
Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
I F + F Y ++ +N+N S+ G+ VG SGSGKST+ ++QR Y P +G++L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSF 496
+DGHDL WLR Q+G+V Q+ L SI +NI L S+++VI AAK A AH F
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 497 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 556
+ L +GY T VGE G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD ESE ++ R
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 557 LEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGE-YAALVNLQSS 615
+ KI RT I++AHRLSTV++ D I+V++ G++VE G H +L+S+ Y+ L LQS
Sbjct: 182 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQSD 241
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 232 bits (591), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 116/240 (48%), Positives = 159/240 (66%), Gaps = 1/240 (0%)
Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
I F + F Y ++ +N+N S+ G+ VG SGSGKST+ ++QR Y P +G++L
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSF 496
+DGHDL WLR Q+G+V Q+ L SI +NI L S+++VI AAK A AH F
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 497 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 556
+ L +GY T VGE G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD ESE ++ R
Sbjct: 128 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 187
Query: 557 LEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGE-YAALVNLQSS 615
+ KI RT I++AHRLSTV++ D I+V++ G++VE G H +L+S+ Y+ L LQS
Sbjct: 188 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQSD 247
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 232 bits (591), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 116/240 (48%), Positives = 159/240 (66%), Gaps = 1/240 (0%)
Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
I F + F Y ++ +N+N S+ G+ VG SGSGKST+ ++QR Y P +G++L
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 63
Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSF 496
+DGHDL WLR Q+G+V Q+ L SI +NI L S+++VI AAK A AH F
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 123
Query: 497 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 556
+ L +GY T VGE G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD ESE ++ R
Sbjct: 124 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 183
Query: 557 LEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGE-YAALVNLQSS 615
+ KI RT I++AHRLSTV++ D I+V++ G++VE G H +L+S+ Y+ L LQS
Sbjct: 184 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQSD 243
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 231 bits (588), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 115/240 (47%), Positives = 159/240 (66%), Gaps = 1/240 (0%)
Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
I F + F Y ++ +N+N S+ G+ VG +GSGKST+ ++QR Y P +G++L
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVL 63
Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSF 496
+DGHDL WLR Q+G+V Q+ L SI +NI L S+++VI AAK A AH F
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 123
Query: 497 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 556
+ L +GY T VGE G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD ESE ++ R
Sbjct: 124 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 183
Query: 557 LEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGE-YAALVNLQSS 615
+ KI RT I++AHRLSTV++ D I+V++ G++VE G H +L+S+ Y+ L LQS
Sbjct: 184 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQSD 243
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 231 bits (588), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 115/240 (47%), Positives = 159/240 (66%), Gaps = 1/240 (0%)
Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
I F + F Y ++ +N+N S+ G+ VG SGSGKST+ ++QR Y P +G++L
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSF 496
+DGHDL WLR Q+G+V Q+ L SI +NI L S+++VI AAK A AH F
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 497 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 556
+ L +GY T VGE G LSGGQ+QRIAIARA++ NPKIL+ D+ATSALD ESE ++ R
Sbjct: 128 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRN 187
Query: 557 LEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGE-YAALVNLQSS 615
+ KI RT I++AHRLSTV++ D I+V++ G++VE G H +L+S+ Y+ L LQS
Sbjct: 188 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQSD 247
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 230 bits (586), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 118/243 (48%), Positives = 166/243 (68%), Gaps = 1/243 (0%)
Query: 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 434
G+IEF V F+Y + ++++F+V G+T A VGPSG+GKSTI+ ++ R Y+ +SG
Sbjct: 52 GRIEFENVHFSY-ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGC 110
Query: 435 ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAH 494
I +DG D+ + LR +G+V Q+ LF +IA+NI G+ A D V AA+AA H
Sbjct: 111 IRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIH 170
Query: 495 SFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQ 554
+ P+GY+TQVGE G +LSGG+KQR+AIAR +L+ P I+LLDEATSALD +E +Q
Sbjct: 171 DAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQ 230
Query: 555 RALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQS 614
+L K+ +NRTTIVVAHRLSTV + D I+V+K+G +VE G H L+S+GG YA + LQ
Sbjct: 231 ASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQ 290
Query: 615 SEH 617
+
Sbjct: 291 GQE 293
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 228 bits (581), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 115/240 (47%), Positives = 158/240 (65%), Gaps = 1/240 (0%)
Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
I F + F Y ++ +N+N S+ G+ VG SGSGKST+ ++QR Y P +G++L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSF 496
+DGHDL WLR Q+G+V Q+ L SI +NI L S+++VI AAK A AH F
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 497 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 556
+ L +GY T VGE G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD ESE ++ R
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 557 LEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGE-YAALVNLQSS 615
+ KI RT I++A RLSTV++ D I+V++ G++VE G H +L+S+ Y+ L LQS
Sbjct: 182 MHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQSD 241
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 228 bits (581), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 115/240 (47%), Positives = 158/240 (65%), Gaps = 1/240 (0%)
Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
I F + F Y ++ +N+N S+ G+ VG SGSGKST+ ++QR Y P +G++L
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSF 496
+DGHDL WLR Q+G+V Q+ L SI +NI L S+++VI AAK A AH F
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 497 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 556
+ L +GY T VGE G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD ESE ++ R
Sbjct: 128 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 187
Query: 557 LEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGE-YAALVNLQSS 615
+ KI RT I++A RLSTV++ D I+V++ G++VE G H +L+S+ Y+ L LQS
Sbjct: 188 MHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQSD 247
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 222 bits (565), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 109/244 (44%), Positives = 164/244 (67%), Gaps = 2/244 (0%)
Query: 372 KLAGQIEFSEVCFAYPSRP-HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP 430
K IEFS+V F+YP + H +++NF + +G T A VG +GSGKSTI ++ R Y+
Sbjct: 13 KFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA 72
Query: 431 TSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKA 490
G I + G ++ +R +G+V Q+ LF +I NIL GK DA+ + VI+A K+
Sbjct: 73 -EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKS 131
Query: 491 ANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE 550
A + F+E LP + T VG G +LSGG++QRIAIAR +L++PKI++ DEATS+LD+++E
Sbjct: 132 AQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTE 191
Query: 551 LIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALV 610
+ Q+A+E + NRT I++AHRLST+ ++I++L G++VE GTH DL+ GEYA +
Sbjct: 192 YLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMW 251
Query: 611 NLQS 614
N+QS
Sbjct: 252 NMQS 255
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 216 bits (550), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 108/243 (44%), Positives = 157/243 (64%), Gaps = 4/243 (1%)
Query: 372 KLAGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP 430
+ G ++F +V FAYP+ P++ V + L F++ GK A VGP+GSGKST+ +++Q LY+P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 431 TSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLG-KEDASMDRVIEAAK 489
T GK+LLDG L +L Q+ V QEP LF S NI G +M+ + A
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 490 AANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 549
+ AH F+ G P GY T+VGE G QLSGGQ+Q +A+ARA++R P++L+LD+ATSALDA +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGN 191
Query: 550 ELIVQRALEKI--MSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYA 607
+L VQR L + ++RT +++ H+LS I+ LK G V E GTH+ L+ +GG Y
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYR 251
Query: 608 ALV 610
++V
Sbjct: 252 SMV 254
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 213 bits (543), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 107/243 (44%), Positives = 160/243 (65%), Gaps = 4/243 (1%)
Query: 373 LAGQIEFSEVCFAYPSRPH-MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT 431
L G ++F +V FAYP+RP +V + L F++ G+ A VGP+GSGKST+ +++Q LY+PT
Sbjct: 11 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 70
Query: 432 SGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLG-KEDASMDRVIEAAKA 490
G++LLDG L + ++L Q+ V QEP +F S+ NI G + +M+ + AA
Sbjct: 71 GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVK 130
Query: 491 ANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE 550
+ AHSF+ GLP GY T+V E G+QLSGGQ+Q +A+ARA++R P +L+LD+ATSALDA S+
Sbjct: 131 SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 190
Query: 551 LIVQRALEKIMS--NRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAA 608
L V++ L + +R+ +++ LS V D I+ L+ G + E GTH L+ K G Y A
Sbjct: 191 LQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWA 250
Query: 609 LVN 611
+V
Sbjct: 251 MVQ 253
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 213 bits (541), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 108/233 (46%), Positives = 156/233 (66%), Gaps = 2/233 (0%)
Query: 382 VCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHD 441
V FAY + +++F AF GPSG GKSTI S+++R Y+PT+G+I +DG
Sbjct: 7 VDFAYDD-SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQP 65
Query: 442 LKSLQLKWLREQMGLVSQEPALFATSIANNILLGKE-DASMDRVIEAAKAANAHSFVEGL 500
+ ++ L+ R Q+G VSQ+ A+ A +I N+ G E D + + + + A A SFVE +
Sbjct: 66 IDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENM 125
Query: 501 PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI 560
PD T+VGE G ++SGGQ+QR+AIARA LRNPKIL+LDEAT++LD+ESE +VQ+AL+ +
Sbjct: 126 PDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL 185
Query: 561 MSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQ 613
M RTT+V+AHRLST+ D D I ++ GQ+ SG H +L++ YA V+ Q
Sbjct: 186 MKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 212 bits (540), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 107/243 (44%), Positives = 155/243 (63%), Gaps = 4/243 (1%)
Query: 372 KLAGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP 430
+ G ++F +V FAYP+ P++ V + L F++ GK A VGP+GSGKST+ +++Q LY+P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 431 TSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLG-KEDASMDRVIEAAK 489
T GK+LLDG L +L Q+ V QEP LF S NI G +M+ + A
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 490 AANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 549
+ AH F+ G P GY T+VGE G QLSGGQ+Q +A+ARA++R P++L+LD ATSALDA +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 550 ELIVQRALEKI--MSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYA 607
+L VQR L + ++RT +++ +LS I+ LK G V E GTH+ L+ +GG Y
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYR 251
Query: 608 ALV 610
++V
Sbjct: 252 SMV 254
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 207 bits (527), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 105/243 (43%), Positives = 154/243 (63%), Gaps = 4/243 (1%)
Query: 372 KLAGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP 430
+ G ++F +V FAYP+ P++ V + L F++ GK A VGP+GSGKST+ +++Q LY+P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 431 TSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLG-KEDASMDRVIEAAK 489
T GK+LLDG L +L Q+ V QEP LF S NI G +M+ + A
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 490 AANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 549
+ AH F+ G P GY T+VGE G QL+ GQ+Q +A+ARA++R P++L+LD ATSALDA +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 550 ELIVQRALEKI--MSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYA 607
+L VQR L + ++RT +++ +LS I+ LK G V E GTH+ L+ +GG Y
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYR 251
Query: 608 ALV 610
++V
Sbjct: 252 SMV 254
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 206 bits (524), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 134/462 (29%), Positives = 235/462 (50%), Gaps = 18/462 (3%)
Query: 153 SNIIFHISSDAILVQDAIGDKTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVA 212
S++I +++D +Q+ + +R F G + + +L+ + + ++P I +
Sbjct: 120 SSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLL 179
Query: 213 GGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQG 272
T + L K + + E +V E + VR V AF E E++ + E+L++
Sbjct: 180 FVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKA-NESLRRS 238
Query: 273 KKSGVAKGI-GVGLTYGLLFCAWALLLWYAGILVRHGDTNGGK--AFTT-IINVIFSGFA 328
S + + + L ++ +LW+ G+LVR+ G A+T ++ ++FS
Sbjct: 239 IISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMM 298
Query: 329 LGQXXXXXXXXXXXXXXXXXXXXXXXXXSHSSERPG----DDGITLPKLAGQIEFSEVCF 384
+G +E+P D+ + LP + G + F V F
Sbjct: 299 IGNILNFIVRASASAKRVLEVL---------NEKPAIEEADNALALPNVEGSVSFENVEF 349
Query: 385 AYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS 444
Y V +NFSV G A +G +GSGKST+++++ RL +P G++ +D D+++
Sbjct: 350 RYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRT 409
Query: 445 LQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGY 504
++LK LR + V QE LF+ +I N+ G+EDA+ D ++EAAK A H F+ LP+GY
Sbjct: 410 VKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGY 469
Query: 505 QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR 564
++V GG SGGQKQR++IARA+++ PK+L+LD+ TS++D +E + L++
Sbjct: 470 DSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGC 529
Query: 565 TTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEY 606
TT ++ ++ T D I+VL G+V GTH +L+ Y
Sbjct: 530 TTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPY 571
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 132/247 (53%), Gaps = 16/247 (6%)
Query: 384 FAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK 443
F +R N++ V AG+ + +G SG+GKST+I V L PT G +L+DG +L
Sbjct: 11 FHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELT 70
Query: 444 SL---QLKWLREQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEG 499
+L +L R Q+G++ Q L ++ ++ N+ L E + + + S V G
Sbjct: 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLV-G 129
Query: 500 LPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEK 559
L D + + + LSGGQKQR+AIARA+ NPK+LL DEATSALD + + L+
Sbjct: 130 LGDKHDSY----PSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKD 185
Query: 560 IMSNR----TTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQS 614
I NR T +++ H + V+ + D + V+ NG+++E T ++ S A +QS
Sbjct: 186 I--NRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQS 243
Query: 615 SEHLSNP 621
+ HL P
Sbjct: 244 TLHLDIP 250
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 132/247 (53%), Gaps = 16/247 (6%)
Query: 384 FAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK 443
F +R N++ V AG+ + +G SG+GKST+I V L PT G +L+DG +L
Sbjct: 34 FHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELT 93
Query: 444 SL---QLKWLREQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEG 499
+L +L R Q+G++ Q L ++ ++ N+ L E + + + S V G
Sbjct: 94 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLV-G 152
Query: 500 LPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEK 559
L D + + + LSGGQKQR+AIARA+ NPK+LL D+ATSALD + + L+
Sbjct: 153 LGDKHDSY----PSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD 208
Query: 560 IMSNR----TTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQS 614
I NR T +++ H + V+ + D + V+ NG+++E T ++ S A +QS
Sbjct: 209 I--NRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQS 266
Query: 615 SEHLSNP 621
+ HL P
Sbjct: 267 TLHLDIP 273
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 130/247 (52%), Gaps = 16/247 (6%)
Query: 384 FAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK 443
F +R N++ V AG+ + +G SG+GKST+I V L PT G +L+DG +L
Sbjct: 34 FHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELT 93
Query: 444 SL---QLKWLREQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEG 499
+L +L R Q+G + Q L ++ ++ N+ L E + + + S V G
Sbjct: 94 TLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLV-G 152
Query: 500 LPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEK 559
L D + + + LSGGQKQR+AIARA+ NPK+LL D+ATSALD + + L+
Sbjct: 153 LGDKHDSY----PSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD 208
Query: 560 IMSNR----TTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQS 614
I NR T +++ H V+ + D + V+ NG+++E T ++ S A +QS
Sbjct: 209 I--NRRLGLTILLITHEXDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQS 266
Query: 615 SEHLSNP 621
+ HL P
Sbjct: 267 TLHLDIP 273
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/210 (35%), Positives = 111/210 (52%), Gaps = 23/210 (10%)
Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455
N+N + G+ A +GPSGSGKST++ + +Y+PTSGKI D D+ L K +G
Sbjct: 21 NINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVG 78
Query: 456 LVSQEPALFA-TSIANNILLGKEDASMDR------VIEAAKAANAHSFVEGLPDGYQTQV 508
LV Q AL+ ++ NI E R V E AK + + P
Sbjct: 79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP------- 131
Query: 509 GEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR--TT 566
QLSGGQ+QR+AIARA+++ P++LLLDE S LDA L V+ L+++ TT
Sbjct: 132 ----WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITT 187
Query: 567 IVVAH-RLSTVRDVDTIMVLKNGQVVESGT 595
+ V H + + D I V++ G++++ GT
Sbjct: 188 VYVTHDQAEALAMADRIAVIREGEILQVGT 217
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 105 bits (263), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 121/226 (53%), Gaps = 4/226 (1%)
Query: 375 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 434
GQ+ ++ Y + + EN++FS+ G+ +G +GSGKST++S RL T G+
Sbjct: 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGE 76
Query: 435 ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVI-EAAKAANA 493
I +DG S+ L+ R+ G++ Q+ +F+ + N L A D+ I + A
Sbjct: 77 IQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKN--LDPNAAHSDQEIWKVADEVGL 134
Query: 494 HSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIV 553
S +E P + +GG LS G KQ + +AR+VL KILLLDE ++ LD + I+
Sbjct: 135 RSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQII 194
Query: 554 QRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDL 599
+R L++ ++ T I+ R+ + + D +V++ +V + + ++L
Sbjct: 195 RRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILEL 240
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 31/226 (13%)
Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS--LQLKWL 450
V + +N + G+ +GPSGSGKST + + L + G+I++DG +LK+ L +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 451 REQMGLVSQEPALFA-TSIANNILLGK-----------EDASMDRVIEAAKAANAHSFVE 498
RE++G+V Q LF ++ NNI L E +M+ + + AH++
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAY-- 156
Query: 499 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALE 558
PD LSGGQ QR+AIARA+ PKI+L DE TSALD E V ++
Sbjct: 157 --PD-----------SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMK 203
Query: 559 KIMSN-RTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISK 602
++ + T +VV H + R+V D ++ + G ++E G DL +
Sbjct: 204 QLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 31/226 (13%)
Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS--LQLKWL 450
V + +N + G+ +GPSGSGKST + + L + G+I++DG +LK+ L +
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 451 REQMGLVSQEPALFA-TSIANNILLGK-----------EDASMDRVIEAAKAANAHSFVE 498
RE++G+V Q LF ++ NNI L E +M+ + + AH++
Sbjct: 78 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAY-- 135
Query: 499 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALE 558
PD LSGGQ QR+AIARA+ PKI+L DE TSALD E V ++
Sbjct: 136 --PDS-----------LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMK 182
Query: 559 KIMSN-RTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISK 602
++ + T +VV H + R+V D ++ + G ++E G DL +
Sbjct: 183 QLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 228
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 119/244 (48%), Gaps = 21/244 (8%)
Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
I F + + FS+ G A VG G GKS+++S + + G +
Sbjct: 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA 63
Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGK--EDASMDRVIEAAKAANAH 494
+ G Q W++ S+ NIL G E+ VI+A
Sbjct: 64 IKGSVAYVPQQAWIQND-------------SLRENILFGCQLEEPYYRSVIQACALLPD- 109
Query: 495 SFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE-SELIV 553
+E LP G +T++GE G LSGGQKQR+++ARAV N I L D+ SA+DA + I
Sbjct: 110 --LEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIF 167
Query: 554 QRAL--EKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVN 611
+ + + ++ N+T I+V H +S + VD I+V+ G++ E G++ +L+++ G +A +
Sbjct: 168 ENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLR 227
Query: 612 LQSS 615
+S
Sbjct: 228 TYAS 231
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 101 bits (252), Expect = 1e-21, Method: Composition-based stats.
Identities = 71/214 (33%), Positives = 117/214 (54%), Gaps = 28/214 (13%)
Query: 394 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG---HDLKSLQL-KW 449
+N+N ++ G+ + +GPSGSGKST+++++ L +PT G++ +D +DL +L K
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 450 LREQMGLVSQE----PALFATSIANNILLGKEDASMD------RVIEAAKAANAHS-FVE 498
R+++G V Q+ P L A L+ K +M R +E K A F
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFAN 140
Query: 499 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALE 558
P+ QLSGGQ+QR+AIARA+ NP I+L D+ T ALD+++ + + L+
Sbjct: 141 HKPN-----------QLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLK 189
Query: 559 KIMSN--RTTIVVAHRLSTVRDVDTIMVLKNGQV 590
K+ +T +VV H ++ R + I+ LK+G+V
Sbjct: 190 KLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 100 bits (249), Expect = 3e-21, Method: Composition-based stats.
Identities = 71/214 (33%), Positives = 117/214 (54%), Gaps = 28/214 (13%)
Query: 394 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG---HDLKSLQL-KW 449
+N+N ++ G+ + +GPSGSGKST+++++ L +PT G++ +D +DL +L K
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 450 LREQMGLVSQE----PALFATSIANNILLGKEDASMD------RVIEAAKAANAHS-FVE 498
R+++G V Q+ P L A L+ K +M R +E K A F
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFAN 140
Query: 499 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALE 558
P+ QLSGGQ+QR+AIARA+ NP I+L D+ T ALD+++ + + L+
Sbjct: 141 HKPN-----------QLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLK 189
Query: 559 KIMSN--RTTIVVAHRLSTVRDVDTIMVLKNGQV 590
K+ +T +VV H ++ R + I+ LK+G+V
Sbjct: 190 KLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 114/213 (53%), Gaps = 11/213 (5%)
Query: 394 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQ 453
EN++ ++ G+ G +GSGKST++ +V L EPTSG +L DG K + +R
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYE---IRRN 81
Query: 454 MGLVSQEPA--LFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEG 511
+G+ Q P FA + + + ++ DR A FV D ++ +V
Sbjct: 82 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDR-DPVPLVKKAMEFVGLDFDSFKDRV--- 137
Query: 512 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS-NRTTIVVA 570
LSGG+K+R+AIA ++ P IL+LDE LD E + + R +EK + +T I+++
Sbjct: 138 PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS 197
Query: 571 HRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 602
H + TV + VD ++VL+ G+ V GT ++ + K
Sbjct: 198 HDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 230
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 114/213 (53%), Gaps = 11/213 (5%)
Query: 394 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQ 453
EN++ ++ G+ G +GSGKST++ +V L EPTSG +L DG K + +R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYE---IRRN 79
Query: 454 MGLVSQEPA--LFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEG 511
+G+ Q P FA + + + ++ DR A FV D ++ +V
Sbjct: 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDR-DPVPLVKKAMEFVGLDFDSFKDRV--- 135
Query: 512 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS-NRTTIVVA 570
LSGG+K+R+AIA ++ P IL+LDE LD E + + R +EK + +T I+++
Sbjct: 136 PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS 195
Query: 571 HRLSTVRD-VDTIMVLKNGQVVESGTHVDLISK 602
H + TV + VD ++VL+ G+ V GT ++ + K
Sbjct: 196 HDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 99.0 bits (245), Expect = 1e-20, Method: Composition-based stats.
Identities = 74/233 (31%), Positives = 121/233 (51%), Gaps = 30/233 (12%)
Query: 377 IEFSEVCFAYPSRPHMVF--ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 434
I+ V Y +++ +N+N ++ G+ + GPSGSGKST ++++ L +PT G+
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 435 ILLDG---HDLKSLQL-KWLREQMGLVSQE----PALFATSIANNILLGKEDASMD---- 482
+ +D +DL +L K R+++G V Q+ P L A L+ K +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEER 121
Query: 483 --RVIEAAKAANAHS-FVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLD 539
R +E K A F P+ QLSGGQ+QR+AIARA+ NP I+L D
Sbjct: 122 RKRALECLKXAELEERFANHKPN-----------QLSGGQQQRVAIARALANNPPIILAD 170
Query: 540 EATSALDAESELIVQRALEKIMSN--RTTIVVAHRLSTVRDVDTIMVLKNGQV 590
E T ALD+++ + + L+K+ +T +VV H ++ R + I+ LK+G+V
Sbjct: 171 EPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 123/230 (53%), Gaps = 22/230 (9%)
Query: 394 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQ 453
+NL+ V++G+ F +GP+G+GK+ + ++ + P SG+ILLDG D+ L + +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHD 73
Query: 454 MGLVSQEPALFA-TSIANNILLG---KEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVG 509
+ V Q +LF ++ N+ G K+ RV++ A+ ++ P
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-------- 125
Query: 510 EGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI-MSNRTTIV 568
LSGG++QR+A+ARA++ NPKILLLDE SALD ++ + L + N+ T++
Sbjct: 126 ---LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
Query: 569 -VAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISKG--GEYAALVNLQS 614
+ H + R + D I V+ +G++++ G ++ K G A+ V ++
Sbjct: 183 HITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVASFVGFEN 232
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 112/211 (53%), Gaps = 23/211 (10%)
Query: 395 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 454
+ ++F V G+ A +GPSG GK+T + M+ +Y+PTSG+I D + + K+ ++
Sbjct: 20 DGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY--REV 77
Query: 455 GLVSQEPALFA-TSIANNILLG------KEDASMDRVIEAAKAANAHSFVEGLPDGYQTQ 507
G+V Q AL+ ++ NI +D RV+E A+ + ++ P
Sbjct: 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP------ 131
Query: 508 VGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR--T 565
TQLSGGQ+QR+A+ARA+++ PK+LL DE S LDA +I++ ++ + T
Sbjct: 132 -----TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGIT 186
Query: 566 TIVVAH-RLSTVRDVDTIMVLKNGQVVESGT 595
++ V H + + I V G++V+ GT
Sbjct: 187 SVYVTHDQAEAMTMASRIAVFNQGKLVQYGT 217
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 104/210 (49%), Gaps = 19/210 (9%)
Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 452
V +++NF ++ G+ A G +G+GK++++ M+ EP+ GKI G
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 81
Query: 453 QMGLVSQEPALFATSIANNILLGKEDASMD--RVIEAAKAANAHSFVEGLPDGYQTQVGE 510
++ SQ + +I NI+ G S D R KA + + +GE
Sbjct: 82 RISFCSQFSWIMPGTIKENIIFG---VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGE 138
Query: 511 GGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL-IVQRALEKIMSNRTTIVV 569
GG LSGGQ+ RI++ARAV ++ + LLD LD +E I + + K+M+N+T I+V
Sbjct: 139 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 198
Query: 570 AHRLSTVRDVDTIMVLKNGQVVESGTHVDL 599
++ ++ D I++L G GT +L
Sbjct: 199 TSKMEHLKKADKILILHEGSSYFYGTFSEL 228
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 104/210 (49%), Gaps = 19/210 (9%)
Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 452
V +++NF ++ G+ A G +G+GK++++ M+ EP+ GKI G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 69
Query: 453 QMGLVSQEPALFATSIANNILLGKEDASMD--RVIEAAKAANAHSFVEGLPDGYQTQVGE 510
++ SQ + +I NI+ G S D R KA + + +GE
Sbjct: 70 RISFCSQFSWIMPGTIKENIIFG---VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGE 126
Query: 511 GGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL-IVQRALEKIMSNRTTIVV 569
GG LSGGQ+ RI++ARAV ++ + LLD LD +E I + + K+M+N+T I+V
Sbjct: 127 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 186
Query: 570 AHRLSTVRDVDTIMVLKNGQVVESGTHVDL 599
++ ++ D I++L G GT +L
Sbjct: 187 TSKMEHLKKADKILILHEGSSYFYGTFSEL 216
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 109/229 (47%), Gaps = 23/229 (10%)
Query: 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 435
+ FS +C P V +N+N +++ G+ A G +GSGK++++ ++ E + G I
Sbjct: 40 NVSFSHLCLV--GNP--VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII 95
Query: 436 LLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMD--RVIEAAKAANA 493
G ++ SQ + +I NI+ G S D R KA
Sbjct: 96 KHSG-------------RVSFCSQFSWIMPGTIKENIIFG---VSYDEYRYKSVVKACQL 139
Query: 494 HSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA-ESELI 552
+ + T +GEGG LSGGQ+ RI++ARAV ++ + LLD LD E +
Sbjct: 140 QQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 199
Query: 553 VQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLIS 601
+ + K+M+N+T I+V ++ +R D I++L G GT +L S
Sbjct: 200 FESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 248
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 109/229 (47%), Gaps = 23/229 (10%)
Query: 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 435
+ FS +C P V +N+N +++ G+ A G +GSGK++++ ++ E + G I
Sbjct: 40 NVSFSHLCLV--GNP--VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII 95
Query: 436 LLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMD--RVIEAAKAANA 493
G ++ SQ + +I NI+ G S D R KA
Sbjct: 96 KHSG-------------RVSFCSQFSWIMPGTIKENIIFG---VSYDEYRYKSVVKACQL 139
Query: 494 HSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA-ESELI 552
+ + T +GEGG LSGGQ+ RI++ARAV ++ + LLD LD E +
Sbjct: 140 QQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 199
Query: 553 VQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLIS 601
+ + K+M+N+T I+V ++ +R D I++L G GT +L S
Sbjct: 200 FESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 248
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 104/210 (49%), Gaps = 19/210 (9%)
Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 452
V +++NF ++ G+ A G +G+GK++++ M+ EP+ GKI G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 453 QMGLVSQEPALFATSIANNILLGKEDASMD--RVIEAAKAANAHSFVEGLPDGYQTQVGE 510
++ SQ + +I NI+ G S D R KA + + +GE
Sbjct: 100 RISFCSQFSWIMPGTIKENIIAG---VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGE 156
Query: 511 GGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL-IVQRALEKIMSNRTTIVV 569
GG LSGGQ+ RI++ARAV ++ + LLD LD +E I + + K+M+N+T I+V
Sbjct: 157 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 216
Query: 570 AHRLSTVRDVDTIMVLKNGQVVESGTHVDL 599
++ ++ D I++L G GT +L
Sbjct: 217 TSKMEHLKKADKILILHEGSSYFYGTFSEL 246
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 16/208 (7%)
Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 452
V +++NF ++ G+ A G +G+GK++++ M+ EP+ GKI G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 453 QMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG 512
++ SQ + +I NI+ D R + KA + + +GEGG
Sbjct: 100 RISFCSQNSWIMPGTIKENIIGVSYDEYRYRSV--IKACQLEEDISKFAEKDNIVLGEGG 157
Query: 513 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL-IVQRALEKIMSNRTTIVVAH 571
LSGGQ+ RI++ARAV ++ + LLD LD +E I + + K+M+N+T I+V
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 217
Query: 572 RLSTVRDVDTIMVLKNGQVVESGTHVDL 599
++ ++ D I++L G GT +L
Sbjct: 218 KMEHLKKADKILILHEGSSYFYGTFSEL 245
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 109/229 (47%), Gaps = 23/229 (10%)
Query: 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 435
+ FS +C + V +N+N +++ G+ A G +GSGK++++ ++ E + G I
Sbjct: 40 NVSFSHLCLV----GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII 95
Query: 436 LLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMD--RVIEAAKAANA 493
G ++ SQ + +I NI+ G S D R KA
Sbjct: 96 KHSG-------------RVSFCSQFSWIMPGTIKENIIRG---VSYDEYRYKSVVKACQL 139
Query: 494 HSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA-ESELI 552
+ + T +GEGG LSGGQ+ RI++ARAV ++ + LLD LD E +
Sbjct: 140 QQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 199
Query: 553 VQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLIS 601
+ + K+M+N+T I+V ++ +R D I++L G GT +L S
Sbjct: 200 FESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 248
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 92.8 bits (229), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 118/221 (53%), Gaps = 28/221 (12%)
Query: 394 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS---LQLKWL 450
+N+N +++ G+ F +GPSG+GK+T + ++ L P++G++ D + S L +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 451 REQMGLVSQEPALFATSIA--------NNILLGKEDASMDRVIEAAKAANAHSFVEGLPD 502
++G+V Q AL+ A N+ + KE+ RV E AK + H + P
Sbjct: 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIR-KRVEEVAKILDIHHVLNHFP- 138
Query: 503 GYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS 562
+LSGGQ+QR+A+ARA++++P +LLLDE S LDA RAL K +
Sbjct: 139 ----------RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMR-DSARALVKEVQ 187
Query: 563 NR---TTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDL 599
+R T +VV+H + + + D + VL G++V+ G DL
Sbjct: 188 SRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 92.8 bits (229), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 16/208 (7%)
Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 452
V +++NF ++ G+ A G +G+GK++++ M+ EP+ GKI G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 453 QMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG 512
++ SQ + +I NI+ D R + KA + + +GEGG
Sbjct: 100 RISFCSQNSWIMPGTIKENIIGVSYDEYRYRSV--IKACQLEEDISKFAEKDNIVLGEGG 157
Query: 513 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL-IVQRALEKIMSNRTTIVVAH 571
LSGGQ+ RI++ARAV ++ + LLD LD +E I + + K+M+N+T I+V
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 217
Query: 572 RLSTVRDVDTIMVLKNGQVVESGTHVDL 599
++ ++ D I++L G GT +L
Sbjct: 218 KMEHLKKADKILILHEGSSYFYGTFSEL 245
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 92.8 bits (229), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 109/229 (47%), Gaps = 23/229 (10%)
Query: 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 435
+ FS +C + V +N+N +++ G+ A G +GSGK++++ ++ E + G I
Sbjct: 40 NVSFSHLCLV----GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII 95
Query: 436 LLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMD--RVIEAAKAANA 493
G ++ SQ + +I NI+ G S D R KA
Sbjct: 96 KHSG-------------RVSFCSQFSWIMPGTIKENIISG---VSYDEYRYKSVVKACQL 139
Query: 494 HSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA-ESELI 552
+ + T +GEGG LSGGQ+ RI++ARAV ++ + LLD LD E +
Sbjct: 140 QQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 199
Query: 553 VQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLIS 601
+ + K+M+N+T I+V ++ +R D I++L G GT +L S
Sbjct: 200 FESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 248
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 92.4 bits (228), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 16/208 (7%)
Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 452
V +++NF ++ G+ A G +G+GK++++ M+ EP+ GKI G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 69
Query: 453 QMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG 512
++ SQ + +I NI+ D R + KA + + +GEGG
Sbjct: 70 RISFCSQFSWIMPGTIKENIIGVSYDEYRYRSV--IKACQLEEDISKFAEKDNIVLGEGG 127
Query: 513 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL-IVQRALEKIMSNRTTIVVAH 571
LSGGQ+ RI++ARAV ++ + LLD LD +E I + + K+M+N+T I+V
Sbjct: 128 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 187
Query: 572 RLSTVRDVDTIMVLKNGQVVESGTHVDL 599
++ ++ D I++L G GT +L
Sbjct: 188 KMEHLKKADKILILHEGSSYFYGTFSEL 215
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 116/238 (48%), Gaps = 24/238 (10%)
Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
IEF V YP V ++F + G+ +GPSGSGK+TI+ ++ L PT G +
Sbjct: 15 IEFVGVEKIYPGGARSV-RGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVW 73
Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALFA-TSIANNILLGKEDA-----SMD-RVIEAAK 489
+ G + L + + +GLV Q ALF ++ +N+ G + MD RV E +
Sbjct: 74 IGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLR 131
Query: 490 AANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 549
S+ P +LSGGQ+QR+A+ARA+ P++LL DE +A+D +
Sbjct: 132 FMRLESYANRFPH-----------ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQI 180
Query: 550 ELIVQRALEKIMSNR--TTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISKGG 604
++ + ++ T++ V H +V D ++VL G V + GT ++ K G
Sbjct: 181 RRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPG 238
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 117/221 (52%), Gaps = 28/221 (12%)
Query: 394 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS---LQLKWL 450
+N+N +++ G+ F +GPSG+GK+T + ++ L P++G++ D + S L +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 451 REQMGLVSQEPALFATSIA--------NNILLGKEDASMDRVIEAAKAANAHSFVEGLPD 502
++G+V Q AL+ A N+ + KE+ RV E AK + H + P
Sbjct: 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIR-KRVEEVAKILDIHHVLNHFP- 138
Query: 503 GYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS 562
+LSG Q+QR+A+ARA++++P +LLLDE S LDA RAL K +
Sbjct: 139 ----------RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMR-DSARALVKEVQ 187
Query: 563 NR---TTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDL 599
+R T +VV+H + + + D + VL G++V+ G DL
Sbjct: 188 SRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 107/227 (47%), Gaps = 20/227 (8%)
Query: 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 435
+ FS +C P V +N+N +++ G+ A G +GSGK++++ ++ E + G I
Sbjct: 40 NVSFSHLCLV--GNP--VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII 95
Query: 436 LLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHS 495
G ++ SQ + +I NI+ D R KA
Sbjct: 96 KHSG-------------RVSFCSQFSWIMPGTIKENIIGVSYDEY--RYKSVVKACQLQQ 140
Query: 496 FVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA-ESELIVQ 554
+ + T +GEGG LSGGQ+ RI++ARAV ++ + LLD LD E + +
Sbjct: 141 DITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFE 200
Query: 555 RALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLIS 601
+ K+M+N+T I+V ++ +R D I++L G GT +L S
Sbjct: 201 SCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 247
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 103/210 (49%), Gaps = 19/210 (9%)
Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 452
V +++NF ++ G+ A G +G+GK++++ M+ EP+ GKI G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 453 QMGLVSQEPALFATSIANNILLGKEDASMD--RVIEAAKAANAHSFVEGLPDGYQTQVGE 510
++ SQ + +I NI+ G S D R KA + + +GE
Sbjct: 100 RISFCSQFSWIMPGTIKENIIFG---VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGE 156
Query: 511 GGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL-IVQRALEKIMSNRTTIVV 569
GG LS GQ+ +I++ARAV ++ + LLD LD +E I + + K+M+N+T I+V
Sbjct: 157 GGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 216
Query: 570 AHRLSTVRDVDTIMVLKNGQVVESGTHVDL 599
++ ++ D I++L G GT +L
Sbjct: 217 TSKMEHLKKADKILILHEGSSYFYGTFSEL 246
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 109/210 (51%), Gaps = 15/210 (7%)
Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455
LN ++ G+ +GPSG GK+T + M+ L EPT G+I D+ L K +
Sbjct: 29 KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 86
Query: 456 LVSQEPALFA-TSIANNIL--LGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG 512
+V Q A++ ++ NI L + D + + + A +E L + Y Q
Sbjct: 87 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQ----- 141
Query: 513 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR--TTIVVA 570
LSGGQ+QR+A+ARA++ P +LL+DE S LDA+ + ++ ++K+ TTI V
Sbjct: 142 --LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVT 199
Query: 571 H-RLSTVRDVDTIMVLKNGQVVESGTHVDL 599
H ++ + D I V+ GQ+++ G+ ++
Sbjct: 200 HDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 229
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 109/210 (51%), Gaps = 15/210 (7%)
Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455
LN ++ G+ +GPSG GK+T + M+ L EPT G+I D+ L K +
Sbjct: 30 KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 87
Query: 456 LVSQEPALFA-TSIANNIL--LGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG 512
+V Q A++ ++ NI L + D + + + A +E L + Y Q
Sbjct: 88 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQ----- 142
Query: 513 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR--TTIVVA 570
LSGGQ+QR+A+ARA++ P +LL+DE S LDA+ + ++ ++K+ TTI V
Sbjct: 143 --LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVT 200
Query: 571 H-RLSTVRDVDTIMVLKNGQVVESGTHVDL 599
H ++ + D I V+ GQ+++ G+ ++
Sbjct: 201 HDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 230
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 102/208 (49%), Gaps = 16/208 (7%)
Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 452
V +++NF ++ G+ A G +G+GK++++ M+ EP+ GKI G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 453 QMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG 512
++ SQ + +I NI+ D R + KA + + +GEGG
Sbjct: 100 RISFCSQFSWIMPGTIKENIIGVSYDEYRYRSV--IKACQLEEDISKFAEKDNIVLGEGG 157
Query: 513 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL-IVQRALEKIMSNRTTIVVAH 571
LS GQ+ +I++ARAV ++ + LLD LD +E I + + K+M+N+T I+V
Sbjct: 158 ITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 217
Query: 572 RLSTVRDVDTIMVLKNGQVVESGTHVDL 599
++ ++ D I++L G GT +L
Sbjct: 218 KMEHLKKADKILILHEGSSYFYGTFSEL 245
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 85.1 bits (209), Expect = 1e-16, Method: Composition-based stats.
Identities = 64/224 (28%), Positives = 112/224 (50%), Gaps = 15/224 (6%)
Query: 397 LNFSVDAGKTF-AFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 455
LN + G+ + +GP+G+GKS + ++ + +P G++ L+G D+ L + R +G
Sbjct: 16 LNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73
Query: 456 LVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQ 514
V Q+ ALF S+ NI G + + + L D +
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLD-------RKPAR 126
Query: 515 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIV--VAHR 572
LSGG++QR+A+ARA++ P++LLLDE SA+D +++ ++ L + + V H
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD 186
Query: 573 L-STVRDVDTIMVLKNGQVVESGTHVDLIS-KGGEYAALVNLQS 614
L D + V+ NG++VE G +L S K GE A ++ ++
Sbjct: 187 LIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLSARN 230
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 109/230 (47%), Gaps = 14/230 (6%)
Query: 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 435
+IE + V F Y V +++N + GK + VG +GSGK+T++ ++ L +G+I
Sbjct: 11 RIELNSVSFRYNG--DYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGEI 67
Query: 436 LLDGHDLKSLQLKWLREQMGLVSQEPA--LFATSIANNILLGKEDASMDRVIEAAKAANA 493
LDG LR+ +G V Q P+ + ++ ++ E +D +
Sbjct: 68 FLDGSPADPF---LLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKV 124
Query: 494 HSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIV 553
V G LSGGQKQR+AIA + R+ + L LDE S LD S+ +
Sbjct: 125 LELV-----GLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREI 179
Query: 554 QRALEKIMSN-RTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK 602
+ LE + + + I+V H L + D+D I+ + NG + G+ + + +
Sbjct: 180 FQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTIDFCGSWEEFVER 229
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 121/246 (49%), Gaps = 18/246 (7%)
Query: 377 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 436
++ E+ + Y H + +N ++ G+ A +G +G GKST+ + +P+SG+IL
Sbjct: 8 LKVEELNYNYSDGTH-ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL 66
Query: 437 LDGH--DLKSLQLKWLREQMGLVSQEP--ALFATSIANNILLGKEDASM--DRVIEAAKA 490
D D + LRE +G+V Q+P LF+ S+ ++ G + + D + +
Sbjct: 67 FDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDN 126
Query: 491 ANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE 550
A + +E L D + LS GQK+R+AIA ++ PK+L+LDE T+ LD
Sbjct: 127 ALKRTGIEHLKD-------KPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGV 179
Query: 551 LIVQRALEKIMSNR--TTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLISKGGEYA 607
+ + L ++ T I+ H + V D + V+K G+V+ G ++ ++ E
Sbjct: 180 SEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE-KEVI 238
Query: 608 ALVNLQ 613
VNL+
Sbjct: 239 RKVNLR 244
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 106/218 (48%), Gaps = 23/218 (10%)
Query: 392 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLR 451
+V +++N + G+ FVGPSG GKST++ M+ L TSG + + +
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDT--PPAE 74
Query: 452 EQMGLVSQEPALFA-TSIANNILLG------KEDASMDRVIEAAKAANAHSFVEGLPDGY 504
+G+V Q AL+ S+A N+ G K++ RV + A+ ++ P
Sbjct: 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKA- 133
Query: 505 QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSN- 563
LSGGQ+QR+AI R ++ P + LLDE S LDA + ++ + ++
Sbjct: 134 ----------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL 183
Query: 564 -RTTIVVAH-RLSTVRDVDTIMVLKNGQVVESGTHVDL 599
RT I V H ++ + D I+VL G+V + G ++L
Sbjct: 184 GRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 106/218 (48%), Gaps = 23/218 (10%)
Query: 392 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLR 451
+V +++N + G+ FVGPSG GKST++ M+ L TSG + + +
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDT--PPAE 74
Query: 452 EQMGLVSQEPALFA-TSIANNILLG------KEDASMDRVIEAAKAANAHSFVEGLPDGY 504
+G+V Q AL+ S+A N+ G K++ RV + A+ ++ P
Sbjct: 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKA- 133
Query: 505 QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSN- 563
LSGGQ+QR+AI R ++ P + LLDE S LDA + ++ + ++
Sbjct: 134 ----------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL 183
Query: 564 -RTTIVVAH-RLSTVRDVDTIMVLKNGQVVESGTHVDL 599
RT I V H ++ + D I+VL G+V + G ++L
Sbjct: 184 GRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 106/218 (48%), Gaps = 23/218 (10%)
Query: 392 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLR 451
+V +++N + G+ FVGPSG GKST++ M+ L TSG + + +
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMND--TPPAE 74
Query: 452 EQMGLVSQEPALFA-TSIANNILLG------KEDASMDRVIEAAKAANAHSFVEGLPDGY 504
+G+V Q AL+ S+A N+ G K++ RV + A+ ++ P
Sbjct: 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKA- 133
Query: 505 QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSN- 563
LSGGQ+QR+AI R ++ P + LLD+ S LDA + ++ + ++
Sbjct: 134 ----------LSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRL 183
Query: 564 -RTTIVVAH-RLSTVRDVDTIMVLKNGQVVESGTHVDL 599
RT I V H ++ + D I+VL G+V + G ++L
Sbjct: 184 GRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 78.2 bits (191), Expect = 2e-14, Method: Composition-based stats.
Identities = 68/217 (31%), Positives = 108/217 (49%), Gaps = 15/217 (6%)
Query: 389 RPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDL---KSL 445
R + + + ++ SV G+ + +G SGSGKST++ ++ L PT GK+ L+G ++
Sbjct: 15 RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEK 74
Query: 446 QLKWLR-EQMGLVSQEPALFA--TSIANNILLGKEDASMDRVIEAAKAANAHSFVE-GLP 501
+L LR ++G V Q L T++ N I+ M + + AK + E GL
Sbjct: 75 ELSLLRNRKLGFVFQFHYLIPELTALENVIV---PMLKMGKPKKEAKERGEYLLSELGLG 131
Query: 502 DGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM 561
D ++ +LSGG++QR+AIARA+ P +L DE T LD+ + V KI
Sbjct: 132 D----KLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKIN 187
Query: 562 SNRTTIV-VAHRLSTVRDVDTIMVLKNGQVVESGTHV 597
T+IV V H + +K+G+VV T V
Sbjct: 188 EGGTSIVMVTHERELAELTHRTLEMKDGKVVGEITRV 224
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 77.0 bits (188), Expect = 4e-14, Method: Composition-based stats.
Identities = 55/213 (25%), Positives = 113/213 (53%), Gaps = 23/213 (10%)
Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG-------HDLKSL 445
+ + ++F ++ G+ F +GP+G+GK+T + ++ L +P+SG + + G H+++ L
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKL 89
Query: 446 QLKWLREQMGLVSQEPAL-FATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGY 504
+ +L E+ G + + +A + ++ ++E A + GL +
Sbjct: 90 -ISYLPEEAGAYRNMQGIEYLRFVAG--FYASSSSEIEEMVERATE------IAGLGEKI 140
Query: 505 QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR 564
+ +V + S G +++ IARA++ NP++ +LDE TS LD + V++ L++
Sbjct: 141 KDRV----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEG 196
Query: 565 TTIVV-AHRLSTVRDV-DTIMVLKNGQVVESGT 595
TI+V +H + V + D I ++ NG +VE+GT
Sbjct: 197 LTILVSSHNMLEVEFLCDRIALIHNGTIVETGT 229
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 108/222 (48%), Gaps = 23/222 (10%)
Query: 386 YPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL 445
Y + +F+ LNF ++ G A +G +G GKST++ ++ ++ P GKI
Sbjct: 13 YYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI---------- 62
Query: 446 QLKWLREQMGLVSQ---EPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPD 502
+ + +G V Q P FA S+ + +L+G+ ++ K+ + ++ L
Sbjct: 63 ---EVYQSIGFVPQFFSSP--FAYSVLDIVLMGR--STHINTFAKPKSHDYQVAMQALDY 115
Query: 503 GYQTQVGEGG-TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM 561
T + + T LSGGQ+Q I IARA+ K++LLDE TSALD ++ IV L +
Sbjct: 116 LNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLA 175
Query: 562 --SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLIS 601
N T + H+ + V + +L N Q + G ++++
Sbjct: 176 QSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKFGETRNILT 217
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 101/209 (48%), Gaps = 13/209 (6%)
Query: 395 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDL----KSLQLKWL 450
++L+ + G+ +GPSG GK+T + + L EPT G+I ++ + + K + +
Sbjct: 23 KDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPK 82
Query: 451 REQMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVG 509
+ V Q AL+ ++ +NI + +V + E L G +
Sbjct: 83 ERDVAXVFQSYALYPHXTVYDNIAFP---LKLRKVPKQEIDKRVREVAEXL--GLTELLN 137
Query: 510 EGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR--TTI 567
+LSGGQ+QR+A+ RA++R PK+ L DE S LDA+ + + L+K+ TTI
Sbjct: 138 RKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTI 197
Query: 568 VVAH-RLSTVRDVDTIMVLKNGQVVESGT 595
V H ++ D I V G++ + GT
Sbjct: 198 YVTHDQVEAXTXGDRIAVXNKGELQQVGT 226
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 105/216 (48%), Gaps = 15/216 (6%)
Query: 396 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDL-----KSLQLKWL 450
++ V G+ +GPSG GK+T + M+ L EP+ G+I + G L K + +
Sbjct: 21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI-GDKLVADPEKGIFVPPK 79
Query: 451 REQMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVG 509
+ +V Q AL+ ++ +NI + +V E L G +
Sbjct: 80 DRDIAMVFQSYALYPHMTVYDNIAF---PLKLRKVPRQEIDQRVREVAELL--GLTELLN 134
Query: 510 EGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR--TTI 567
+LSGGQ+QR+A+ RA++R P++ L+DE S LDA+ + ++ L+K+ TTI
Sbjct: 135 RKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTI 194
Query: 568 VVAH-RLSTVRDVDTIMVLKNGQVVESGTHVDLISK 602
V H ++ + D I V+ G + + G+ ++ K
Sbjct: 195 YVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 114/228 (50%), Gaps = 35/228 (15%)
Query: 391 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL----- 445
H V + ++ AG + +G SGSGKST + + L +P+ G I+++G ++ +
Sbjct: 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDG 78
Query: 446 --------QLKWLREQMGLVSQEPALFA-TSIANNIL--------LGKEDASMDRVIEAA 488
QL+ LR ++ +V Q L++ ++ N++ L K DA + A
Sbjct: 79 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLA 138
Query: 489 KAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE 548
K G+ + Q G+ LSGGQ+QR++IARA+ P +LL DE TSALD E
Sbjct: 139 KV--------GIDERAQ---GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE 187
Query: 549 SELIVQRALEKIMSN-RTTIVVAHRLSTVRDVDT-IMVLKNGQVVESG 594
V R ++++ +T +VV H + R V + ++ L G++ E G
Sbjct: 188 LVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 235
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 108/222 (48%), Gaps = 23/222 (10%)
Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 452
+ +++ + +G+ A +GP+G+GKST++ ++ P+ G+ L G +L S Q K L
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR 85
Query: 453 QMGLVSQEPAL-FATSIANNILLGKED--ASMDRVIEAAKAANAHSFVEGLPD-GYQTQV 508
++ Q L F S++ I +G+ S DR +A + A + L Y+
Sbjct: 86 TRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDR--QALQQVMAQTDCLALAQRDYRV-- 141
Query: 509 GEGGTQLSGGQKQRIAIARAVLR------NPKILLLDEATSALDAESELIVQRALEKIMS 562
LSGG++QR+ +AR + + P+ L LDE TSALD + R L ++
Sbjct: 142 ------LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTR 195
Query: 563 NRTTIV--VAHRLS-TVRDVDTIMVLKNGQVVESGTHVDLIS 601
V V H L+ D IM+L G++V GT ++++
Sbjct: 196 QEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 70.9 bits (172), Expect = 3e-12, Method: Composition-based stats.
Identities = 56/218 (25%), Positives = 105/218 (48%), Gaps = 22/218 (10%)
Query: 394 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQ 453
+ ++ SV+ G +GP+GSGKST+I+++ + G++ + D+ + + L
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY-H 81
Query: 454 MGLVS--QEP-ALFATSIANNILLGK---EDASMDRVIEAAKAANAHSFVE--------- 498
G+V Q P L ++ N+L+G+ ++ ++ + VE
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 499 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL-DAESELIVQRAL 557
L Y + GE LSGGQ + + I RA++ NPK++++DE + + + I L
Sbjct: 142 KLSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 197
Query: 558 EKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESG 594
E T +++ HRL V + +D + V+ NGQ++ G
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 69.3 bits (168), Expect = 8e-12, Method: Composition-based stats.
Identities = 55/218 (25%), Positives = 105/218 (48%), Gaps = 22/218 (10%)
Query: 394 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQ 453
+ ++ SV+ G +GP+GSGKST+I+++ + G++ + D+ + + L
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY-H 81
Query: 454 MGLVS--QEP-ALFATSIANNILLGK---EDASMDRVIEAAKAANAHSFVE--------- 498
G+V Q P L ++ N+L+G+ ++ ++ + VE
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 499 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL-DAESELIVQRAL 557
L Y + GE LSGGQ + + I RA++ NPK++++D+ + + + I L
Sbjct: 142 KLSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVL 197
Query: 558 EKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESG 594
E T +++ HRL V + +D + V+ NGQ++ G
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 92/207 (44%), Gaps = 42/207 (20%)
Query: 400 SVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQ 459
+ G+ VGP+G GK+T + M+ + EPT GK+ D V+
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL----------------TVAY 421
Query: 460 EPALFATSIANNI--LLGKEDASMDRVIEAAKAANAHSFVE------GLPDGYQTQVGEG 511
+P + LL K D+S N++ + G+ D Y V
Sbjct: 422 KPQYIKAEYEGTVYELLSKIDSS---------KLNSNFYKTELLKPLGIIDLYDRNV--- 469
Query: 512 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVV 569
LSGG+ QR+AIA +LR+ I LLDE ++ LD E L V RA+ +M + +T +VV
Sbjct: 470 -EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV 528
Query: 570 AHRLSTVRDVDTIMVLKNGQVVESGTH 596
H + + V +++ G E G H
Sbjct: 529 EHDVLMIDYVSDRLIVFEG---EPGRH 552
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 514 QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSN-RTTIVVAHR 572
QLSGG+ QR+AIA A+LR DE +S LD L V R + ++ + + +VV H
Sbjct: 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287
Query: 573 LSTV 576
L+ +
Sbjct: 288 LAVL 291
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 92/207 (44%), Gaps = 42/207 (20%)
Query: 400 SVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQ 459
+ G+ VGP+G GK+T + M+ + EPT GK+ D V+
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL----------------TVAY 407
Query: 460 EPALFATSIANNI--LLGKEDASMDRVIEAAKAANAHSFVE------GLPDGYQTQVGEG 511
+P + LL K D+S N++ + G+ D Y V
Sbjct: 408 KPQYIKAEYEGTVYELLSKIDSS---------KLNSNFYKTELLKPLGIIDLYDRNV--- 455
Query: 512 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVV 569
LSGG+ QR+AIA +LR+ I LLDE ++ LD E L V RA+ +M + +T +VV
Sbjct: 456 -EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV 514
Query: 570 AHRLSTVRDVDTIMVLKNGQVVESGTH 596
H + + V +++ G E G H
Sbjct: 515 EHDVLMIDYVSDRLIVFEG---EPGRH 538
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 514 QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSN-RTTIVVAHR 572
QLSGG+ QR+AIA A+LR DE +S LD L V R + ++ + + +VV H
Sbjct: 214 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 273
Query: 573 LSTV 576
L+ +
Sbjct: 274 LAVL 277
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 68.9 bits (167), Expect = 1e-11, Method: Composition-based stats.
Identities = 56/218 (25%), Positives = 104/218 (47%), Gaps = 22/218 (10%)
Query: 394 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQ 453
+ ++ SV G +GP+GSGKST+I+++ + G++ + D+ + + L
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY-H 81
Query: 454 MGLVS--QEP-ALFATSIANNILLGK---EDASMDRVIEAAKAANAHSFVE--------- 498
G+V Q P L ++ N+L+G+ ++ ++ + VE
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 499 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL-DAESELIVQRAL 557
L Y + GE LSGGQ + + I RA++ NPK++++DE + + + I L
Sbjct: 142 KLSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 197
Query: 558 EKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESG 594
E T +++ HRL V + +D + V+ NGQ++ G
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 82/182 (45%), Gaps = 39/182 (21%)
Query: 400 SVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQ 459
+ G+ VGP+G GK+T + + + EPT GKI D V+
Sbjct: 308 EIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDL----------------TVAY 351
Query: 460 EPALFATSIANNI--LLGKEDASMDRVIEAAKAANAHSFVE------GLPDGYQTQVGEG 511
+P + LL K DAS N++ + G+ D Y +V E
Sbjct: 352 KPQYIKADYEGTVYELLSKIDAS---------KLNSNFYKTELLKPLGIIDLYDREVNE- 401
Query: 512 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVV 569
LSGG+ QR+AIA +LR+ I LLDE ++ LD E L V RA+ + + +T +VV
Sbjct: 402 ---LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVV 458
Query: 570 AH 571
H
Sbjct: 459 EH 460
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 12/183 (6%)
Query: 401 VDAGKTFAFVGPSGSGKSTIISMV--QRLYEPTSGKILLDG--HDLKSLQLKWLREQMGL 456
V G VGP+G+GKST + ++ Q + DG + +L+ E++
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103
Query: 457 VSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQ-VGEGGTQ- 514
P + + L+ K A +VIE K A+ +E + + + V E Q
Sbjct: 104 GEIRPVVKPQYVD---LIPK--AVKGKVIELLKKADETGKLEEVVKALELENVLEREIQH 158
Query: 515 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSN-RTTIVVAHRL 573
LSGG+ QR+AIA A+LRN DE +S LD L RA+ ++ ++ +VV H L
Sbjct: 159 LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDL 218
Query: 574 STV 576
+ +
Sbjct: 219 AVL 221
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 97/203 (47%), Gaps = 23/203 (11%)
Query: 408 AFVGPSGSGKSTIISMVQRLYEPT----SGKILLDGHDLKSLQLKWLR----EQMGLVSQ 459
A VG S SGKSTII + + P SG++L G DL +++ + LR +++ LV Q
Sbjct: 38 AIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRKIRWKEIALVPQ 97
Query: 460 EPALFATSIANNILLGKEDA-------SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG 512
I K+ S +IE KA+ V P+ +
Sbjct: 98 AAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIE--KASEKLRMVRLNPEAV---LNSYP 152
Query: 513 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALD--AESELIVQRALEKIMSNRTTIVVA 570
QLSGG KQR+ IA A+L +P +L+LDE TSALD ++ +I K M T I V
Sbjct: 153 LQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITLIFVT 212
Query: 571 HRLSTVRDV-DTIMVLKNGQVVE 592
H ++ ++ D + V+ G +VE
Sbjct: 213 HDIAVAAELADKVAVIYGGNLVE 235
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 115/224 (51%), Gaps = 15/224 (6%)
Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDL--KSLQLKWL 450
V +++ S+D G+ +G SG GK+T++ + +P SG+I L G + K+ L
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVR 78
Query: 451 REQMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPD--GYQTQ 507
++G + QE LF ++ NI G + + A +E + + G
Sbjct: 79 ERRLGYLVQEGVLFPHLTVYRNIAYGLGNGK-------GRTAQERQRIEAMLELTGISEL 131
Query: 508 VGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE-SELIVQRALEKIMSN-RT 565
G +LSGGQ+QR A+ARA+ +P+++LLDE SALD + I + + + +N ++
Sbjct: 132 AGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKS 191
Query: 566 TIVVAH-RLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAA 608
+ V+H R ++ D I V+K G+++++ + +L + + A
Sbjct: 192 AVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPADLDA 235
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 109/221 (49%), Gaps = 33/221 (14%)
Query: 397 LNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK--ILLDGHDLKSLQLKWLREQM 454
L+ V AG+ VGP+G+GKST+++ R+ TSGK I G L++ L
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLA---RMAGMTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 455 GLVSQEPA-LFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGT 513
+SQ+ FAT + + + L + D + ++ A A ++G
Sbjct: 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA----------LDDKLGRSTN 125
Query: 514 QLSGGQKQRIAIARAVLR-----NP--KILLLDEATSALDAESELIVQRALEKIMSNRTT 566
QLSGG+ QR+ +A VL+ NP ++LLLD+ +LD Q AL+KI+S +
Sbjct: 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQ----QSALDKILSALSQ 181
Query: 567 -----IVVAHRLS-TVRDVDTIMVLKNGQVVESGTHVDLIS 601
++ +H L+ T+R +LK G+++ SG ++++
Sbjct: 182 QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 110/221 (49%), Gaps = 33/221 (14%)
Query: 397 LNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK--ILLDGHDLKSLQLKWLREQM 454
L+ V AG+ VGP+G+GKST+++ R+ TSGK I G L++ L
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLA---RMAGMTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 455 GLVSQEPA-LFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGT 513
+SQ+ FAT + + + L + D + ++ A A ++G
Sbjct: 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA----------LDDKLGRSTN 125
Query: 514 QLSGGQKQRIAIARAVLR-----NP--KILLLDEATSALDAESELIVQRALEKIMSNRTT 566
QLSGG+ QR+ +A VL+ NP ++LLLD+ ++LD Q AL+KI+S +
Sbjct: 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQ----QSALDKILSALSQ 181
Query: 567 -----IVVAHRLS-TVRDVDTIMVLKNGQVVESGTHVDLIS 601
++ +H L+ T+R +LK G+++ SG ++++
Sbjct: 182 QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 107/221 (48%), Gaps = 33/221 (14%)
Query: 397 LNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK--ILLDGHDLKSLQLKWLREQM 454
L+ V AG+ VGP+G+GKST+++ R TSGK I G L++ L
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLA---RXAGXTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 455 GLVSQEPA-LFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGT 513
+SQ+ FAT + + + L + D + ++ A A ++G
Sbjct: 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA----------LDDKLGRSTN 125
Query: 514 QLSGGQKQRIAIARAVLR-----NP--KILLLDEATSALDAESELIVQRALEKIMSNRTT 566
QLSGG+ QR+ +A VL+ NP ++LLLDE ++LD Q AL+KI+S +
Sbjct: 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQ----QSALDKILSALSQ 181
Query: 567 -----IVVAHRLS-TVRDVDTIMVLKNGQVVESGTHVDLIS 601
+ +H L+ T+R +LK G+ + SG ++++
Sbjct: 182 QGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLT 222
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 106/221 (47%), Gaps = 33/221 (14%)
Query: 397 LNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK--ILLDGHDLKSLQLKWLREQM 454
L+ V AG+ VGP+G+GKST+++ R TSGK I G L++ L
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLA---RXAGXTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 455 GLVSQEPA-LFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGT 513
+SQ+ FAT + + + L + D + ++ A A ++G
Sbjct: 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA----------LDDKLGRSTN 125
Query: 514 QLSGGQKQRIAIARAVLR-----NP--KILLLDEATSALDAESELIVQRALEKIMS---- 562
QLSGG+ QR+ +A VL+ NP ++LLLDE ++LD Q AL+KI+S
Sbjct: 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQ----QSALDKILSALCQ 181
Query: 563 -NRTTIVVAHRLS-TVRDVDTIMVLKNGQVVESGTHVDLIS 601
+ +H L+ T+R +LK G+ + SG ++++
Sbjct: 182 QGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLT 222
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 111/228 (48%), Gaps = 18/228 (7%)
Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMV--QRLYEPTSGKILLDGHDLKSLQL-KW 449
+ + +N V G+ A +GP+G+GKST+ ++ Y G+ILLDG ++ L +
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 450 LREQMGLVSQEPA-LFATSIANNILLGKEDASMDRVIEAA----KAANAHSFVEGLPDGY 504
R+ + L Q P + +IAN + L + A + R + A K A ++
Sbjct: 78 ARKGLFLAFQYPVEVPGVTIANFLRLALQ-AKLGREVGVAEFWTKVKKALELLDWDESYL 136
Query: 505 QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS-N 563
+ EG SGG+K+R I + ++ P +LDE S LD ++ +V R + + N
Sbjct: 137 SRYLNEG---FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPN 193
Query: 564 RTTIVVAH--RLSTVRDVDTIMVLKNGQVVESG---THVDLISKGGEY 606
+V+ H R+ D + V+ +G+VV +G ++L +KG E+
Sbjct: 194 FGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELALELEAKGYEW 241
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 101/216 (46%), Gaps = 17/216 (7%)
Query: 394 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL-RE 452
+ ++ V G+ +G +G+GK+T +S + L GKI+ +G D+ + + R
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 453 QMGLVSQEPALFAT-SIANNILLG----KEDASMDRVIEAAKAANAHSFVEGLPDGYQTQ 507
+ LV + +F ++ N+ G K+ + R +E ++ L + +
Sbjct: 82 GIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLE---------WIFSLFPRLKER 132
Query: 508 VGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTI 567
+ + G LSGG++Q +AI RA+ PK+L DE + L V ++KI TTI
Sbjct: 133 LKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTI 192
Query: 568 VVAHR--LSTVRDVDTIMVLKNGQVVESGTHVDLIS 601
++ + L ++ VL+ GQ+V G +L+
Sbjct: 193 LLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 102/219 (46%), Gaps = 23/219 (10%)
Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMV--QRLYEPTSGKILLDGHDLKSLQ---- 446
+ L+ V G+ A +GP+GSGKST+ + + + YE T G + G DL +L
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 94
Query: 447 --------LKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVE 498
++ E G+ +Q F + N + + ++DR + ++
Sbjct: 95 AGEGIFMAFQYPVEIPGVSNQ---FFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLK 151
Query: 499 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALE 558
+P+ T+ G SGG+K+R I + + P++ +LDE+ S LD ++ +V +
Sbjct: 152 -MPEDLLTRSVNVG--FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVN 208
Query: 559 KIMS-NRTTIVVAH--RLSTVRDVDTIMVLKNGQVVESG 594
+ R+ I+V H R+ D + VL G++V+SG
Sbjct: 209 SLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 247
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 101/219 (46%), Gaps = 23/219 (10%)
Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMV--QRLYEPTSGKILLDGHDLKSLQ---- 446
+ L+ V G+ A +GP+GSGKST+ + + + YE T G + G DL +L
Sbjct: 16 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 75
Query: 447 --------LKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVE 498
++ E G+ +Q F + N + + ++DR + +
Sbjct: 76 AGEGIFMAFQYPVEIPGVSNQ---FFLQTALNAVRSYRGQETLDR-FDFQDLMEEKIALL 131
Query: 499 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALE 558
+P+ T+ G SGG+K+R I + + P++ +LDE+ S LD ++ +V +
Sbjct: 132 KMPEDLLTRSVNVG--FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVN 189
Query: 559 KIMS-NRTTIVVAH--RLSTVRDVDTIMVLKNGQVVESG 594
+ R+ I+V H R+ D + VL G++V+SG
Sbjct: 190 SLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 228
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 55.8 bits (133), Expect = 9e-08, Method: Composition-based stats.
Identities = 47/202 (23%), Positives = 105/202 (51%), Gaps = 25/202 (12%)
Query: 376 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 435
++E ++ Y +P V E + +++ G F GP+G GK+T++ + +P G+I
Sbjct: 10 KLEIRDLSVGY-DKP--VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 436 LLDGHDLKSLQLK--WLREQMGL---VSQEPALFATSIANNILLGKEDASMDRVIEAAKA 490
+ +G + ++ K +L E++ + +S E L A + + + K + +++A ++
Sbjct: 67 IYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNE-----IMDALES 121
Query: 491 ANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE 550
VE L + ++GE LS G +R+ +A +L N +I +LD+ A+D +S+
Sbjct: 122 ------VEVL--DLKKKLGE----LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 169
Query: 551 LIVQRALEKIMSNRTTIVVAHR 572
V +++ +I+ + ++++ R
Sbjct: 170 HKVLKSILEILKEKGIVIISSR 191
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 109/222 (49%), Gaps = 18/222 (8%)
Query: 393 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-TSGKILLDGHDLKSL--QLKW 449
+ + +++ + G + G +G+GK+T+++++ YEP TSG + L G + +
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILN-AYEPATSGTVNLFGKXPGKVGYSAET 94
Query: 450 LREQMGLVSQ---EPALFATSIANNILLGK-EDASMDRVIEAAKAANAHSFVE--GLPDG 503
+R+ +G VS E + + ++ G + + + I+ AH ++ G
Sbjct: 95 VRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSAK 154
Query: 504 YQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD---AESELIVQRALEKI 560
Q +G LS G+KQR+ IARA+ P++L+LDE + LD ES L + +L
Sbjct: 155 AQQYIG----YLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDS 210
Query: 561 MSNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLIS 601
I V H + + + I++LK+GQ ++ G D+++
Sbjct: 211 YPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILT 252
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 87/185 (47%), Gaps = 19/185 (10%)
Query: 394 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQ 453
EN+N V+ G+ +GP+GSGK+T++ + L P SG I ++G +++ ++ ++R
Sbjct: 21 LENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIR-NYIRYS 77
Query: 454 MGLVSQEPALFATSIANNILLGKEDASMDR--VIEAAKAANAHSFVEGLPDGYQTQVGEG 511
L E ++ + + L +E +DR +E KA + +
Sbjct: 78 TNL--PEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEI----------LRRK 125
Query: 512 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAH 571
+LS GQ + + A+ P+I+ LDE +DA ++ R +++ + I+V H
Sbjct: 126 LYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKE--YGKEGILVTH 183
Query: 572 RLSTV 576
L +
Sbjct: 184 ELDML 188
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 39/174 (22%)
Query: 380 SEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG 439
E AY ++ ++ + + + GP+G GKST++ + +G++ DG
Sbjct: 439 CEFSLAYGAK--ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAI------ANGQV--DG 488
Query: 440 HDLKSLQLKWLREQMGLVSQEPALFATSIANNIL-------LGKEDASMDRVIEAAKAAN 492
+ E+ V E + T ++L +G ++A D++IE
Sbjct: 489 FPTQ--------EECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEF----- 535
Query: 493 AHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD 546
G D + + LSGG K ++A+ARAVLRN ILLLDE T+ LD
Sbjct: 536 ------GFTD---EMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLD 580
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 377 IEFSEVCFAYP--SRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 434
++ + + F YP S+P + ++NF A +GP+G+GKST+I+++ PTSG+
Sbjct: 672 VKVTNMEFQYPGTSKPQIT--DINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGE 729
Query: 435 I 435
+
Sbjct: 730 V 730
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 515 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLS 574
LSGGQK ++ +A + P +++LDE T+ LD +S + +AL++ I++ H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 575 TVRDV-DTIMVLKNGQVVESG 594
+++ + + +K+G++ SG
Sbjct: 960 FTKNLTEEVWAVKDGRMTPSG 980
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 39/174 (22%)
Query: 380 SEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG 439
E AY ++ ++ + + + GP+G GKST+ + +G++ DG
Sbjct: 439 CEFSLAYGAK--ILLNKTQLRLKRARRYGICGPNGCGKSTLXRAI------ANGQV--DG 488
Query: 440 HDLKSLQLKWLREQMGLVSQEPALFATSIANNIL-------LGKEDASMDRVIEAAKAAN 492
+ E+ V E + T ++L +G ++A D++IE
Sbjct: 489 FPTQ--------EECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEF----- 535
Query: 493 AHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD 546
G D + + LSGG K ++A+ARAVLRN ILLLDE T+ LD
Sbjct: 536 ------GFTD---EXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLD 580
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 384 FAYP--SRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 435
F YP S+P + ++NF A +GP+G+GKST+I+++ PTSG++
Sbjct: 679 FQYPGTSKPQIT--DINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 515 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLS 574
LSGGQK ++ +A + P +++LDE T+ LD +S + +AL++ I++ H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 575 TVRDV-DTIMVLKNGQVVESG 594
+++ + + +K+G+ SG
Sbjct: 960 FTKNLTEEVWAVKDGRXTPSG 980
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 39/174 (22%)
Query: 380 SEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG 439
E AY ++ ++ + + + GP+G GKST+ + +G++ DG
Sbjct: 433 CEFSLAYGAK--ILLNKTQLRLKRARRYGICGPNGCGKSTLXRAI------ANGQV--DG 482
Query: 440 HDLKSLQLKWLREQMGLVSQEPALFATSIANNIL-------LGKEDASMDRVIEAAKAAN 492
+ E+ V E + T ++L +G ++A D++IE
Sbjct: 483 FPTQ--------EECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEF----- 529
Query: 493 AHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD 546
G D + + LSGG K ++A+ARAVLRN ILLLDE T+ LD
Sbjct: 530 ------GFTD---EXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLD 574
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 384 FAYP--SRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 435
F YP S+P + ++NF A +GP+G+GKST+I+++ PTSG++
Sbjct: 673 FQYPGTSKPQIT--DINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 724
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 515 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLS 574
LSGGQK ++ +A + P +++LDE T+ LD +S + +AL++ I++ H
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 953
Query: 575 TVRDV-DTIMVLKNGQVVESG 594
+++ + + +K+G+ SG
Sbjct: 954 FTKNLTEEVWAVKDGRXTPSG 974
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 10/112 (8%)
Query: 507 QVGEGGTQLSGGQKQRIAIARAVLRNPK---ILLLDEATSALDAESELIVQRALEKIM-S 562
++G+ T+LSGG+ QRI +A + R+ + + +LDE T+ L +QR L K++ +
Sbjct: 723 RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA 782
Query: 563 NRTTIVVAHRLSTVRDVDTIMVL------KNGQVVESGTHVDLISKGGEYAA 608
T I V H++ V D ++ + G++V GT ++ G A
Sbjct: 783 GNTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAAGSVTA 834
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 83/200 (41%), Gaps = 38/200 (19%)
Query: 398 NFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLV 457
N G+ +GP+G GK+T ++ G+I D + + ++
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARIL-------VGEITADEGSVTP--------EKQIL 332
Query: 458 SQEPALFATSIANNILLGKEDASMDRVI-------EAAKAANAHSFVEGLPDGYQTQVGE 510
S +P + + E+AS D + E K N H +E
Sbjct: 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLES----------- 381
Query: 511 GGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR--TTIV 568
LSGG+ Q++ IA + + + +LD+ +S LD E IV +A++++ R T +
Sbjct: 382 NVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFI 441
Query: 569 VAHRLSTVRD--VDTIMVLK 586
+ H LS + D D I+V K
Sbjct: 442 IDHDLS-IHDYIADRIIVFK 460
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 515 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRL 573
LSGG QR+ +A ++LR + + D+ +S LD + + +A+ +++ N+ IVV H L
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDL 197
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 503 GYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK---ILLLDEATSALDAESELIVQRALEK 559
GY ++G+ T LSGG+ QR+ +A + R + +LDE T+ L + + L +
Sbjct: 835 GY-XKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR 893
Query: 560 IMSN-RTTIVVAHRLSTVRDVDTIMVL------KNGQVVESGT 595
++ N T +V+ H L ++ D I+ L + GQ+V GT
Sbjct: 894 LVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGT 936
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 503 GYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK---ILLLDEATSALDAESELIVQRALEK 559
GY ++G+ T LSGG+ QR+ +A + R + +LDE T+ L + + L +
Sbjct: 835 GYM-KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR 893
Query: 560 IMSN-RTTIVVAHRLSTVRDVDTIMVL------KNGQVVESGT 595
++ N T +V+ H L ++ D I+ L + GQ+V GT
Sbjct: 894 LVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGT 936
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 11/103 (10%)
Query: 503 GYQTQVGEGGTQLSGGQKQRIAIARAVLR--NPKIL-LLDEATSALDAESELIVQRALEK 559
GY ++G+ T LSGG+ QR+ +A + R N + L +LDE T+ L + + L +
Sbjct: 533 GYM-KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR 591
Query: 560 IMSN-RTTIVVAHRLSTVRDVDTIMVL------KNGQVVESGT 595
++ N T +V+ H L ++ D I+ L + GQ+V GT
Sbjct: 592 LVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGT 634
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 11/103 (10%)
Query: 503 GYQTQVGEGGTQLSGGQKQRIAIARAVLRNP---KILLLDEATSALDAESELIVQRALEK 559
GY ++G+ T LSGG+ QRI +A + + + +LDE T L E + L +
Sbjct: 795 GY-VKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHR 853
Query: 560 IMSN-RTTIVVAHRLSTVRDVDTIMVL------KNGQVVESGT 595
++ T IV+ H L +++ D I+ L + G +V +GT
Sbjct: 854 LVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGT 896
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 513 TQLSGGQKQRIAIARAVLRNPK--ILLLDEATSALDAESELIVQRALEKIMS-NRTTIVV 569
T LSGG+ QRI +A + I +LDE T L + + L+K+ T IVV
Sbjct: 463 TTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVV 522
Query: 570 AHRLSTVRDVDTIM 583
H +R+ D I+
Sbjct: 523 EHDEEVIRNADHII 536
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 515 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAH 571
LSGG+ QR+AI A+ I L+DE ++ LD+E +I + + + + + +T +V H
Sbjct: 468 LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEH 526
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 514 QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS-NRTTIVVAHR 572
+LSGG+ QR AI + ++ + + DE +S LD + L + + +++ + I V H
Sbjct: 221 KLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHD 280
Query: 573 LSTV 576
LS +
Sbjct: 281 LSVL 284
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 511 GGTQLSGGQKQRIAIARAVLRNP-KILLLDEATSALDAESELIVQRALEKIMSNRTTIVV 569
GG Q++ R+AIA A++ N + ++LDE T LD + K+ S I++
Sbjct: 283 GGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIII 342
Query: 570 AH--RLSTVRDVDTIMVLKNGQV 590
H L V DV I V K+G V
Sbjct: 343 THHRELEDVADV-IINVKKDGNV 364
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 12/104 (11%)
Query: 491 ANAHSFVEGLPD---GYQTQVGEGGTQLSGGQKQRIAIARAVLRNP---KILLLDEATSA 544
A H ++ L D GY ++G+ LSGG+ QR+ +A + + + +LDE T+
Sbjct: 838 AGVHRYLRTLVDVGLGY-VRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTG 896
Query: 545 L---DAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVL 585
L D L V L + T IV+ H L ++ D I+ L
Sbjct: 897 LHFDDIRKLLNVINGL--VDKGNTVIVIEHNLDVIKTSDWIIDL 938
>pdb|4DWJ|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|C Chain C, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|D Chain D, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|E Chain E, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|F Chain F, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|G Chain G, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|H Chain H, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4EAQ|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With
3'-Azido-3'-Deoxythymidine-5'-Monophosphate
pdb|4EAQ|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With
3'-Azido-3'-Deoxythymidine-5'-Monophosphate
pdb|4F4I|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Apo-Form
pdb|4F4I|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Apo-Form
Length = 229
Score = 32.7 bits (73), Expect = 0.81, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 31/98 (31%)
Query: 395 ENLNFSVDAGKTF-AFVGPSGSGKSTIISMV-QRLYE-------------PTSG---KIL 436
ENL F +A F F GP GSGK+T+I+ V RL + PT KI+
Sbjct: 16 ENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIV 75
Query: 437 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILL 474
L+G+D+ + E LFA S +++L
Sbjct: 76 LEGNDMD-------------IRTEAMLFAASRREHLVL 100
>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
Length = 426
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 515 LSGGQKQRIAIARAV----LRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVA 570
LSGG++ AIA +R +LDE +ALD + + L+K S+ IV+
Sbjct: 329 LSGGERALTAIALLFSILKVRPVPFCVLDEVEAALDEANVFRFAQYLKKYSSDTQFIVIT 388
Query: 571 HRLSTVRDVDTI 582
HR T+ + D +
Sbjct: 389 HRKGTMEEADVL 400
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,375,087
Number of Sequences: 62578
Number of extensions: 761669
Number of successful extensions: 2215
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1929
Number of HSP's gapped (non-prelim): 176
length of query: 782
length of database: 14,973,337
effective HSP length: 106
effective length of query: 676
effective length of database: 8,340,069
effective search space: 5637886644
effective search space used: 5637886644
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)